Query 002515
Match_columns 913
No_of_seqs 261 out of 1535
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 01:32:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002515.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002515hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK12902 secA preprotein trans 100.0 2E-225 5E-230 1962.9 80.3 820 1-904 84-931 (939)
2 CHL00122 secA preprotein trans 100.0 1E-214 3E-219 1877.4 79.6 792 1-901 75-868 (870)
3 PRK12901 secA preprotein trans 100.0 4E-215 1E-219 1888.1 73.0 700 1-905 168-1022(1112)
4 PRK12903 secA preprotein trans 100.0 2E-214 5E-219 1863.9 75.7 701 1-903 77-781 (925)
5 PRK13103 secA preprotein trans 100.0 2E-211 3E-216 1857.4 76.6 736 1-906 81-835 (913)
6 PRK13107 preprotein translocas 100.0 7E-207 2E-211 1817.0 76.9 732 1-902 81-831 (908)
7 PRK13104 secA preprotein trans 100.0 2E-205 5E-210 1809.3 78.5 733 1-902 81-827 (896)
8 PRK12904 preprotein translocas 100.0 4E-204 9E-209 1797.9 79.8 734 1-905 80-814 (830)
9 PRK12326 preprotein translocas 100.0 3E-202 7E-207 1743.9 69.8 644 1-904 77-722 (764)
10 PRK12900 secA preprotein trans 100.0 2E-201 4E-206 1774.5 72.7 693 1-900 137-941 (1025)
11 COG0653 SecA Preprotein transl 100.0 6E-200 1E-204 1745.2 60.1 705 1-904 79-784 (822)
12 PRK12906 secA preprotein trans 100.0 5E-197 1E-201 1731.3 75.6 700 1-902 79-792 (796)
13 PRK12899 secA preprotein trans 100.0 4E-190 9E-195 1674.8 77.2 703 1-904 93-932 (970)
14 TIGR00963 secA preprotein tran 100.0 5E-187 1E-191 1634.6 74.1 687 1-889 55-745 (745)
15 PRK09200 preprotein translocas 100.0 9E-182 2E-186 1610.4 76.4 705 1-912 77-787 (790)
16 TIGR03714 secA2 accessory Sec 100.0 6E-179 1E-183 1574.2 75.3 682 1-890 69-762 (762)
17 PRK12898 secA preprotein trans 100.0 6E-146 1E-150 1280.5 55.3 524 1-662 102-647 (656)
18 PF07517 SecA_DEAD: SecA DEAD- 100.0 1.2E-64 2.5E-69 542.7 16.9 191 1-306 76-266 (266)
19 PF07516 SecA_SW: SecA Wing an 100.0 4.5E-46 9.8E-51 389.2 27.1 214 625-902 1-214 (214)
20 KOG0331 ATP-dependent RNA heli 100.0 1.6E-29 3.4E-34 289.5 26.8 281 2-420 113-408 (519)
21 PF01043 SecA_PP_bind: SecA pr 100.0 2.7E-30 5.8E-35 244.8 11.8 109 154-262 3-113 (113)
22 KOG0333 U5 snRNP-like RNA heli 100.0 6.8E-27 1.5E-31 262.0 26.5 299 1-420 266-584 (673)
23 PTZ00110 helicase; Provisional 99.9 8.4E-26 1.8E-30 266.1 31.7 280 2-420 152-444 (545)
24 PRK04837 ATP-dependent RNA hel 99.9 2.8E-25 6E-30 253.7 31.2 275 2-420 30-322 (423)
25 COG0513 SrmB Superfamily II DN 99.9 1.2E-25 2.5E-30 263.0 28.2 275 2-420 51-340 (513)
26 PRK10590 ATP-dependent RNA hel 99.9 4.1E-25 9E-30 254.9 31.5 274 2-420 23-312 (456)
27 PLN00206 DEAD-box ATP-dependen 99.9 6.3E-25 1.4E-29 257.3 30.8 274 2-420 143-435 (518)
28 PRK04537 ATP-dependent RNA hel 99.9 1.3E-24 2.9E-29 257.2 31.7 279 2-420 31-324 (572)
29 KOG0330 ATP-dependent RNA heli 99.9 4.7E-25 1E-29 240.8 23.2 277 1-420 82-367 (476)
30 PRK11776 ATP-dependent RNA hel 99.9 5.2E-24 1.1E-28 245.7 31.8 274 2-420 26-309 (460)
31 PRK11192 ATP-dependent RNA hel 99.9 1.2E-23 2.6E-28 240.7 31.8 273 2-420 23-312 (434)
32 PRK11634 ATP-dependent RNA hel 99.9 1.6E-23 3.5E-28 250.0 34.1 275 2-420 28-312 (629)
33 PRK01297 ATP-dependent RNA hel 99.9 3.2E-23 7E-28 240.2 32.7 127 2-138 109-250 (475)
34 TIGR00614 recQ_fam ATP-depende 99.9 7.2E-22 1.6E-26 229.0 33.8 269 2-420 11-293 (470)
35 KOG0340 ATP-dependent RNA heli 99.9 1.4E-22 3.1E-27 219.4 23.3 279 2-420 29-321 (442)
36 KOG0336 ATP-dependent RNA heli 99.9 6.5E-23 1.4E-27 224.4 19.8 275 2-420 242-532 (629)
37 TIGR03817 DECH_helic helicase/ 99.9 5.7E-22 1.2E-26 240.8 28.6 129 2-138 36-170 (742)
38 PTZ00424 helicase 45; Provisio 99.9 2E-21 4.3E-26 219.2 31.0 127 2-138 50-183 (401)
39 PRK11057 ATP-dependent DNA hel 99.9 2.6E-21 5.7E-26 230.8 33.0 266 2-420 25-303 (607)
40 KOG0342 ATP-dependent RNA heli 99.9 4.6E-21 9.9E-26 214.8 30.5 280 4-420 106-397 (543)
41 KOG0338 ATP-dependent RNA heli 99.9 8.6E-22 1.9E-26 220.5 24.6 276 2-420 203-493 (691)
42 KOG0345 ATP-dependent RNA heli 99.9 2.8E-21 6.2E-26 215.3 26.3 277 3-420 29-324 (567)
43 KOG0335 ATP-dependent RNA heli 99.9 2.7E-21 5.9E-26 219.2 24.4 283 2-420 96-404 (482)
44 KOG0343 RNA Helicase [RNA proc 99.9 5.5E-21 1.2E-25 215.6 26.0 276 2-420 91-382 (758)
45 TIGR01389 recQ ATP-dependent D 99.9 1.3E-20 2.7E-25 224.3 29.7 264 3-420 14-291 (591)
46 KOG0341 DEAD-box protein abstr 99.9 4.7E-22 1E-26 216.5 14.4 274 1-420 191-488 (610)
47 PLN03137 ATP-dependent DNA hel 99.9 1.4E-20 3.1E-25 230.5 28.7 270 3-420 461-747 (1195)
48 PRK10917 ATP-dependent DNA hel 99.9 1.8E-20 3.9E-25 226.3 29.0 121 2-137 261-395 (681)
49 KOG0347 RNA helicase [RNA proc 99.9 2.3E-21 5E-26 218.7 17.7 361 2-640 203-603 (731)
50 PRK13767 ATP-dependent helicas 99.9 1.1E-19 2.3E-24 224.8 32.8 128 2-138 32-185 (876)
51 TIGR00580 mfd transcription-re 99.9 5.1E-20 1.1E-24 227.1 28.9 121 2-137 451-585 (926)
52 KOG0339 ATP-dependent RNA heli 99.9 5.1E-20 1.1E-24 206.1 22.7 279 2-420 245-535 (731)
53 TIGR00643 recG ATP-dependent D 99.8 2E-19 4.3E-24 215.6 29.2 121 2-137 235-369 (630)
54 KOG0334 RNA helicase [RNA proc 99.8 6.9E-20 1.5E-24 220.0 23.6 281 2-420 387-680 (997)
55 PRK10689 transcription-repair 99.8 4.8E-19 1E-23 222.5 30.1 259 2-420 600-878 (1147)
56 PRK00254 ski2-like helicase; P 99.8 4.5E-18 9.8E-23 206.9 27.9 125 2-138 23-151 (720)
57 PRK02362 ski2-like helicase; P 99.8 5.8E-18 1.3E-22 206.4 27.7 128 2-142 23-153 (737)
58 PRK01172 ski2-like helicase; P 99.8 5.7E-18 1.2E-22 204.6 26.9 129 2-143 22-152 (674)
59 PHA02558 uvsW UvsW helicase; P 99.8 7.8E-18 1.7E-22 197.0 26.7 119 2-138 114-235 (501)
60 PRK14701 reverse gyrase; Provi 99.8 8.1E-18 1.8E-22 216.3 28.0 125 2-138 79-213 (1638)
61 TIGR02621 cas3_GSU0051 CRISPR- 99.8 2.7E-17 5.8E-22 199.2 28.3 124 2-135 15-181 (844)
62 KOG0328 Predicted ATP-dependen 99.8 1E-17 2.2E-22 177.5 20.5 275 2-420 49-333 (400)
63 TIGR01587 cas3_core CRISPR-ass 99.7 1.8E-16 3.8E-21 176.9 24.0 75 345-420 214-295 (358)
64 KOG0348 ATP-dependent RNA heli 99.7 1.7E-16 3.6E-21 179.4 22.8 130 2-142 159-303 (708)
65 PRK09401 reverse gyrase; Revie 99.7 6E-16 1.3E-20 195.3 29.0 125 2-138 80-214 (1176)
66 PRK09751 putative ATP-dependen 99.7 3.8E-16 8.2E-21 198.4 25.2 109 21-138 2-137 (1490)
67 PRK13766 Hef nuclease; Provisi 99.7 1.2E-15 2.7E-20 186.9 28.6 125 3-138 16-144 (773)
68 PHA02653 RNA helicase NPH-II; 99.7 1.4E-15 2.9E-20 182.7 27.9 119 5-140 167-306 (675)
69 TIGR01970 DEAH_box_HrpB ATP-de 99.7 1.2E-15 2.7E-20 186.8 27.0 119 7-140 9-128 (819)
70 TIGR01054 rgy reverse gyrase. 99.7 2.8E-15 6.1E-20 189.4 30.3 123 2-138 78-212 (1171)
71 PRK11664 ATP-dependent RNA hel 99.7 9.3E-16 2E-20 187.9 25.2 116 7-137 12-128 (812)
72 KOG0346 RNA helicase [RNA proc 99.7 1.8E-15 4E-20 168.1 23.3 267 2-413 41-328 (569)
73 TIGR03158 cas3_cyano CRISPR-as 99.7 8.5E-15 1.8E-19 164.7 26.7 123 7-137 2-157 (357)
74 KOG0326 ATP-dependent RNA heli 99.7 5.7E-16 1.2E-20 166.5 16.2 272 2-420 107-389 (459)
75 KOG4284 DEAD box protein [Tran 99.7 3.1E-16 6.8E-21 179.7 14.6 282 2-420 47-339 (980)
76 KOG0344 ATP-dependent RNA heli 99.7 1.7E-15 3.7E-20 173.7 19.7 277 2-420 158-455 (593)
77 KOG0350 DEAD-box ATP-dependent 99.7 7.5E-15 1.6E-19 165.3 24.1 129 2-141 159-310 (620)
78 COG1201 Lhr Lhr-like helicases 99.7 1.5E-14 3.3E-19 174.7 26.0 279 2-419 22-320 (814)
79 KOG0332 ATP-dependent RNA heli 99.6 3.6E-14 7.8E-19 155.5 20.3 277 2-420 112-397 (477)
80 KOG0337 ATP-dependent RNA heli 99.6 8.8E-15 1.9E-19 162.1 15.3 279 2-424 43-332 (529)
81 COG1200 RecG RecG-like helicas 99.6 5E-14 1.1E-18 165.3 20.7 243 13-420 286-550 (677)
82 PRK09694 helicase Cas3; Provis 99.6 3.4E-13 7.3E-18 165.9 27.6 82 340-421 547-639 (878)
83 COG1202 Superfamily II helicas 99.5 6.3E-13 1.4E-17 151.8 22.7 269 4-420 218-507 (830)
84 PRK04914 ATP-dependent helicas 99.5 2.7E-11 5.9E-16 150.3 38.7 83 336-420 478-563 (956)
85 COG1111 MPH1 ERCC4-like helica 99.5 6E-13 1.3E-17 151.2 21.6 150 7-170 21-187 (542)
86 TIGR00603 rad25 DNA repair hel 99.5 6.6E-13 1.4E-17 159.9 22.0 83 332-420 475-559 (732)
87 PRK11131 ATP-dependent RNA hel 99.5 6.6E-13 1.4E-17 166.9 21.9 83 336-420 268-354 (1294)
88 COG0514 RecQ Superfamily II DN 99.5 7.7E-12 1.7E-16 147.1 29.3 263 6-420 21-297 (590)
89 COG1205 Distinct helicase fami 99.5 2.2E-12 4.8E-17 159.0 26.1 277 2-419 70-380 (851)
90 KOG0327 Translation initiation 99.5 6.8E-13 1.5E-17 146.5 18.7 274 2-420 48-330 (397)
91 PRK05580 primosome assembly pr 99.5 8.9E-12 1.9E-16 151.1 29.8 116 3-138 145-271 (679)
92 TIGR00595 priA primosomal prot 99.4 1.6E-11 3.5E-16 144.2 25.3 100 21-141 3-109 (505)
93 TIGR01967 DEAH_box_HrpA ATP-de 99.4 1.6E-11 3.4E-16 155.1 22.9 82 337-420 262-347 (1283)
94 COG1204 Superfamily II helicas 99.4 2.6E-11 5.5E-16 148.0 21.6 113 19-145 51-165 (766)
95 COG1061 SSL2 DNA or RNA helica 99.3 1.9E-11 4.1E-16 141.6 16.2 119 1-140 37-161 (442)
96 KOG0952 DNA/RNA helicase MER3/ 99.3 8.8E-11 1.9E-15 141.8 18.6 126 6-141 114-253 (1230)
97 cd00268 DEADc DEAD-box helicas 99.3 3.8E-11 8.3E-16 123.1 13.1 127 2-138 21-156 (203)
98 KOG0329 ATP-dependent RNA heli 99.2 4.4E-11 9.6E-16 126.0 11.7 125 3-138 65-198 (387)
99 PF00270 DEAD: DEAD/DEAH box h 99.2 1.2E-10 2.6E-15 115.1 13.4 127 4-140 1-134 (169)
100 TIGR01407 dinG_rel DnaQ family 99.2 1.5E-09 3.2E-14 135.1 26.0 134 282-420 589-742 (850)
101 PRK11448 hsdR type I restricti 99.1 1.6E-08 3.5E-13 128.2 29.8 130 3-137 414-552 (1123)
102 cd00079 HELICc Helicase superf 99.1 5.3E-10 1.1E-14 105.4 12.3 87 332-420 7-95 (131)
103 PLN03142 Probable chromatin-re 99.0 3.7E-08 8.1E-13 123.3 25.9 87 334-420 468-557 (1033)
104 KOG0352 ATP-dependent DNA heli 99.0 5.3E-09 1.1E-13 116.9 15.7 270 4-419 22-321 (641)
105 KOG0351 ATP-dependent DNA heli 99.0 1.5E-08 3.2E-13 125.6 20.5 267 5-420 267-552 (941)
106 cd00046 DEXDc DEAD-like helica 98.9 9.3E-09 2E-13 95.9 11.7 112 17-139 2-117 (144)
107 PRK07246 bifunctional ATP-depe 98.9 1.9E-07 4E-12 116.0 25.0 135 282-422 567-713 (820)
108 COG1203 CRISPR-associated heli 98.8 2E-07 4.4E-12 114.5 20.8 132 291-422 373-513 (733)
109 PRK05298 excinuclease ABC subu 98.8 3.8E-07 8.3E-12 110.7 21.3 181 229-420 327-513 (652)
110 smart00487 DEXDc DEAD-like hel 98.8 7.4E-08 1.6E-12 95.4 12.5 127 2-138 8-142 (201)
111 COG4098 comFA Superfamily II D 98.7 8E-07 1.7E-11 97.9 20.5 78 341-420 293-372 (441)
112 COG1110 Reverse gyrase [DNA re 98.7 2.7E-06 5.9E-11 104.0 25.8 125 2-138 82-216 (1187)
113 TIGR00631 uvrb excinuclease AB 98.7 2.5E-07 5.5E-12 112.1 16.9 180 229-420 324-509 (655)
114 TIGR03117 cas_csf4 CRISPR-asso 98.6 1.5E-06 3.3E-11 104.5 21.3 63 14-76 13-82 (636)
115 PRK08074 bifunctional ATP-depe 98.6 4E-06 8.6E-11 105.7 24.7 137 282-420 666-821 (928)
116 KOG0353 ATP-dependent DNA heli 98.6 2.8E-06 6E-11 94.1 19.0 268 4-419 96-383 (695)
117 PRK11747 dinG ATP-dependent DN 98.4 8.9E-06 1.9E-10 99.7 20.4 134 282-420 450-602 (697)
118 COG1643 HrpA HrpA-like helicas 98.3 4.6E-05 9.9E-10 94.3 22.7 124 290-419 197-329 (845)
119 PF04851 ResIII: Type III rest 98.3 3.8E-06 8.3E-11 83.6 9.7 134 2-141 3-162 (184)
120 KOG0951 RNA helicase BRR2, DEA 98.3 8.5E-05 1.8E-09 92.5 22.8 112 19-141 329-452 (1674)
121 COG1199 DinG Rad3-related DNA 98.1 6.9E-05 1.5E-09 91.1 17.3 65 2-66 15-86 (654)
122 KOG0349 Putative DEAD-box RNA 98.0 3.1E-05 6.8E-10 87.4 11.9 66 355-420 507-575 (725)
123 KOG0922 DEAH-box RNA helicase 98.0 0.00034 7.3E-09 83.3 20.2 115 290-415 197-328 (674)
124 PF00271 Helicase_C: Helicase 98.0 1.9E-05 4.1E-10 69.2 7.6 49 371-420 1-50 (78)
125 KOG0924 mRNA splicing factor A 97.9 0.0003 6.5E-09 83.4 17.0 110 7-136 363-479 (1042)
126 KOG0354 DEAD-box like helicase 97.9 0.00031 6.7E-09 85.2 17.4 118 8-137 69-191 (746)
127 COG1197 Mfd Transcription-repa 97.9 0.00062 1.4E-08 85.7 20.3 118 5-137 597-728 (1139)
128 COG4096 HsdR Type I site-speci 97.8 0.0022 4.8E-08 78.2 22.8 123 2-137 167-297 (875)
129 KOG0923 mRNA splicing factor A 97.8 0.00062 1.3E-08 80.7 17.3 116 291-416 413-545 (902)
130 smart00490 HELICc helicase sup 97.8 7.8E-05 1.7E-09 64.3 7.5 52 368-420 2-54 (82)
131 KOG0920 ATP-dependent RNA heli 97.2 0.0065 1.4E-07 75.9 16.2 111 7-137 180-299 (924)
132 TIGR00348 hsdR type I site-spe 97.2 0.00077 1.7E-08 82.6 8.2 109 17-137 265-377 (667)
133 COG1198 PriA Primosomal protei 97.0 0.051 1.1E-06 67.1 21.2 97 19-136 221-324 (730)
134 KOG0385 Chromatin remodeling c 97.0 0.14 3.1E-06 62.5 23.9 89 332-420 466-557 (971)
135 KOG0950 DNA polymerase theta/e 97.0 0.0044 9.4E-08 76.5 11.7 131 2-143 223-358 (1008)
136 KOG0387 Transcription-coupled 97.0 0.078 1.7E-06 64.8 21.6 87 332-419 525-615 (923)
137 smart00489 DEXDc3 DEAD-like he 97.0 0.0023 5E-08 70.8 8.4 65 2-66 8-84 (289)
138 smart00488 DEXDc2 DEAD-like he 97.0 0.0023 5E-08 70.8 8.4 65 2-66 8-84 (289)
139 KOG0948 Nuclear exosomal RNA h 96.9 0.0078 1.7E-07 72.6 12.3 116 5-141 132-250 (1041)
140 COG4581 Superfamily II RNA hel 96.8 0.0044 9.5E-08 78.1 10.3 122 3-141 120-244 (1041)
141 PF00176 SNF2_N: SNF2 family N 96.1 0.012 2.7E-07 63.4 7.1 109 16-137 26-146 (299)
142 PF07652 Flavi_DEAD: Flaviviru 95.9 0.014 3E-07 58.5 5.8 101 16-137 3-107 (148)
143 COG0553 HepA Superfamily II DN 95.7 0.58 1.3E-05 58.4 20.4 79 337-416 692-776 (866)
144 PRK14873 primosome assembly pr 95.4 0.079 1.7E-06 65.2 11.1 93 24-136 169-268 (665)
145 KOG0384 Chromodomain-helicase 95.2 1.2 2.5E-05 57.4 20.1 333 17-420 391-769 (1373)
146 KOG0947 Cytoplasmic exosomal R 95.0 0.93 2E-05 56.9 18.0 118 5-142 300-419 (1248)
147 KOG1000 Chromatin remodeling p 94.6 1.6 3.4E-05 51.6 17.6 86 335-422 470-563 (689)
148 PRK11773 uvrD DNA-dependent he 94.2 3.5 7.7E-05 51.5 21.1 53 334-386 325-380 (721)
149 COG0556 UvrB Helicase subunit 93.9 0.31 6.7E-06 57.7 10.2 135 279-420 377-513 (663)
150 TIGR01073 pcrA ATP-dependent D 93.3 5.8 0.00012 49.6 20.7 54 333-386 320-377 (726)
151 PF12340 DUF3638: Protein of u 93.2 1.7 3.7E-05 47.0 13.8 141 5-151 26-196 (229)
152 KOG0389 SNF2 family DNA-depend 93.1 0.29 6.2E-06 60.1 8.5 131 5-152 402-562 (941)
153 PRK12723 flagellar biosynthesi 92.6 0.36 7.8E-06 55.9 8.2 56 20-76 179-238 (388)
154 PF09848 DUF2075: Uncharacteri 92.4 0.35 7.7E-06 54.9 7.9 49 19-67 5-55 (352)
155 PF13401 AAA_22: AAA domain; P 92.4 0.18 4E-06 47.8 4.8 104 19-152 8-125 (131)
156 TIGR01075 uvrD DNA helicase II 91.8 18 0.0004 45.2 22.4 60 334-393 320-382 (715)
157 PRK10536 hypothetical protein; 91.3 2.8 6E-05 46.2 12.7 65 7-72 64-144 (262)
158 KOG1123 RNA polymerase II tran 91.2 0.15 3.3E-06 59.7 3.0 120 7-138 307-435 (776)
159 PRK15483 type III restriction- 91.1 0.76 1.7E-05 58.5 9.3 36 19-54 63-100 (986)
160 COG0610 Type I site-specific r 90.8 1 2.2E-05 58.0 10.2 108 18-136 276-387 (962)
161 PF02399 Herpes_ori_bp: Origin 89.5 7.6 0.00016 48.8 15.6 70 345-420 274-343 (824)
162 TIGR00604 rad3 DNA repair heli 89.1 0.91 2E-05 56.5 7.8 136 282-420 435-601 (705)
163 TIGR00376 DNA helicase, putati 88.4 4 8.6E-05 50.5 12.4 61 5-65 160-223 (637)
164 KOG0951 RNA helicase BRR2, DEA 87.7 1.2 2.6E-05 57.3 7.4 102 19-137 1163-1265(1674)
165 PF00448 SRP54: SRP54-type pro 87.4 2 4.4E-05 45.1 8.0 56 23-80 9-65 (196)
166 TIGR00064 ftsY signal recognit 87.4 2.6 5.7E-05 46.5 9.1 53 22-75 79-131 (272)
167 KOG0925 mRNA splicing factor A 87.0 2.4 5.2E-05 50.0 8.7 150 236-415 161-325 (699)
168 TIGR01425 SRP54_euk signal rec 87.0 3.7 8E-05 48.3 10.5 82 23-105 108-197 (429)
169 PF13245 AAA_19: Part of AAA d 86.7 1.9 4.1E-05 38.6 6.2 45 19-63 14-62 (76)
170 COG0556 UvrB Helicase subunit 86.5 0.85 1.8E-05 54.2 4.9 51 15-68 29-82 (663)
171 PRK00771 signal recognition pa 86.4 2.4 5.3E-05 49.9 8.7 51 23-74 103-153 (437)
172 PF13604 AAA_30: AAA domain; P 86.1 3.2 7E-05 43.4 8.6 58 5-62 4-65 (196)
173 KOG0949 Predicted helicase, DE 85.6 3.4 7.4E-05 52.3 9.5 115 19-141 530-648 (1330)
174 PRK14974 cell division protein 84.9 2.3 4.9E-05 48.5 7.2 55 21-76 146-200 (336)
175 PF02562 PhoH: PhoH-like prote 84.8 2.9 6.3E-05 44.5 7.5 46 7-52 9-58 (205)
176 TIGR03499 FlhF flagellar biosy 84.8 2.1 4.6E-05 47.4 6.8 52 23-75 202-255 (282)
177 cd03115 SRP The signal recogni 84.6 2.8 6.1E-05 42.2 7.1 53 22-75 7-59 (173)
178 KOG0989 Replication factor C, 84.3 0.72 1.6E-05 51.7 2.8 34 103-140 111-144 (346)
179 PRK04296 thymidine kinase; Pro 84.1 1.1 2.3E-05 46.7 3.8 28 24-51 11-38 (190)
180 cd00009 AAA The AAA+ (ATPases 83.6 3.5 7.5E-05 38.4 6.8 38 19-56 23-60 (151)
181 PF00580 UvrD-helicase: UvrD/R 83.3 2.7 5.8E-05 45.6 6.8 117 6-136 4-126 (315)
182 PRK10416 signal recognition pa 83.2 4 8.7E-05 46.1 8.2 52 23-75 122-173 (318)
183 KOG1803 DNA helicase [Replicat 82.8 3.5 7.6E-05 49.9 7.8 39 19-57 205-243 (649)
184 PRK10867 signal recognition pa 82.5 9.7 0.00021 45.0 11.2 83 21-104 106-197 (433)
185 PRK14722 flhF flagellar biosyn 82.0 4 8.7E-05 47.2 7.8 62 16-78 136-201 (374)
186 cd01124 KaiC KaiC is a circadi 81.2 3.9 8.6E-05 41.2 6.7 34 20-53 4-37 (187)
187 COG2109 BtuR ATP:corrinoid ade 81.2 4.3 9.4E-05 42.8 6.9 32 19-50 30-63 (198)
188 PRK10875 recD exonuclease V su 81.1 4 8.7E-05 50.2 7.7 68 5-72 155-228 (615)
189 KOG0392 SNF2 family DNA-depend 80.7 2.6 5.7E-05 54.3 6.0 117 19-152 998-1138(1549)
190 KOG1802 RNA helicase nonsense 80.5 9.9 0.00021 46.7 10.4 69 6-78 414-485 (935)
191 TIGR01447 recD exodeoxyribonuc 80.5 8.2 0.00018 47.3 10.1 67 5-71 148-221 (586)
192 cd01120 RecA-like_NTPases RecA 80.3 7.6 0.00016 37.4 8.1 36 22-57 6-41 (165)
193 smart00382 AAA ATPases associa 80.2 1.5 3.4E-05 40.2 3.1 35 20-56 7-43 (148)
194 KOG1805 DNA replication helica 79.7 7 0.00015 49.7 9.1 50 5-54 672-724 (1100)
195 cd00561 CobA_CobO_BtuR ATP:cor 79.3 3.2 6.9E-05 42.5 5.2 34 19-52 4-42 (159)
196 PRK08727 hypothetical protein; 78.3 7.2 0.00016 41.8 7.8 32 19-51 45-77 (233)
197 KOG4150 Predicted ATP-dependen 77.8 34 0.00074 41.5 13.4 122 296-419 459-599 (1034)
198 TIGR00959 ffh signal recogniti 77.6 16 0.00035 43.2 11.0 85 20-105 104-197 (428)
199 COG4889 Predicted helicase [Ge 77.3 11 0.00025 47.5 9.7 75 2-80 163-242 (1518)
200 TIGR01547 phage_term_2 phage t 77.3 4.3 9.3E-05 46.7 6.2 104 19-137 5-113 (396)
201 PRK05703 flhF flagellar biosyn 77.1 8.2 0.00018 45.4 8.4 53 23-76 229-283 (424)
202 TIGR00596 rad1 DNA repair prot 76.8 16 0.00035 46.4 11.4 74 86-169 1-89 (814)
203 COG1419 FlhF Flagellar GTP-bin 76.3 6.2 0.00014 46.0 7.0 57 23-80 211-269 (407)
204 TIGR00708 cobA cob(I)alamin ad 75.9 5.2 0.00011 41.5 5.7 31 19-49 7-39 (173)
205 cd01122 GP4d_helicase GP4d_hel 75.7 19 0.00042 38.8 10.4 115 15-138 28-153 (271)
206 COG1474 CDC6 Cdc6-related prot 75.1 4.5 9.7E-05 46.7 5.5 91 19-140 46-138 (366)
207 PRK07414 cob(I)yrinic acid a,c 74.9 6.3 0.00014 41.2 6.0 31 19-49 23-55 (178)
208 TIGR00631 uvrb excinuclease AB 74.8 4.4 9.5E-05 50.2 5.6 47 19-68 33-79 (655)
209 KOG1133 Helicase of the DEAD s 74.6 3.6 7.7E-05 50.5 4.6 41 2-43 15-61 (821)
210 PRK06995 flhF flagellar biosyn 74.0 16 0.00034 43.9 9.7 81 23-105 264-349 (484)
211 COG3587 Restriction endonuclea 73.7 6.1 0.00013 49.6 6.3 34 20-53 79-114 (985)
212 PF01656 CbiA: CobQ/CobB/MinD/ 72.9 4.9 0.00011 40.6 4.6 34 19-52 3-36 (195)
213 PF04364 DNA_pol3_chi: DNA pol 72.8 10 0.00022 37.8 6.6 71 339-422 15-92 (137)
214 PRK12726 flagellar biosynthesi 71.9 7.2 0.00016 45.5 6.0 53 23-76 214-266 (407)
215 cd02037 MRP-like MRP (Multiple 71.5 4.9 0.00011 40.5 4.2 32 21-52 6-37 (169)
216 PRK08084 DNA replication initi 69.6 15 0.00032 39.5 7.5 34 19-53 49-83 (235)
217 KOG0952 DNA/RNA helicase MER3/ 69.1 6.5 0.00014 50.3 5.2 113 19-146 947-1065(1230)
218 COG3972 Superfamily I DNA and 68.9 25 0.00055 42.1 9.6 107 24-136 185-306 (660)
219 cd02032 Bchl_like This family 67.9 5.6 0.00012 43.1 4.0 30 23-52 8-37 (267)
220 cd02034 CooC The accessory pro 67.8 15 0.00032 35.4 6.4 33 21-53 5-37 (116)
221 KOG0926 DEAH-box RNA helicase 67.2 8.2 0.00018 48.2 5.4 97 19-136 275-383 (1172)
222 PRK14721 flhF flagellar biosyn 66.1 21 0.00045 42.2 8.3 56 23-79 199-256 (420)
223 KOG0349 Putative DEAD-box RNA 65.9 1.6 3.4E-05 50.7 -0.8 36 2-37 24-61 (725)
224 COG1444 Predicted P-loop ATPas 65.8 28 0.00061 43.8 9.7 60 19-78 235-296 (758)
225 cd02042 ParA ParA and ParB of 64.9 22 0.00048 32.5 6.8 35 20-54 5-39 (104)
226 PRK13185 chlL protochlorophyll 64.6 7.8 0.00017 42.0 4.3 31 19-50 7-37 (270)
227 TIGR01968 minD_bact septum sit 64.3 7.8 0.00017 41.2 4.2 33 19-51 6-38 (261)
228 PF00308 Bac_DnaA: Bacterial d 64.2 18 0.0004 38.5 6.9 54 125-179 97-165 (219)
229 PRK11889 flhF flagellar biosyn 64.0 15 0.00033 43.1 6.6 53 23-76 249-301 (436)
230 TIGR01007 eps_fam capsular exo 64.0 8.2 0.00018 40.0 4.2 36 19-54 22-57 (204)
231 TIGR02016 BchX chlorophyllide 63.6 8.1 0.00018 43.1 4.3 30 22-51 7-36 (296)
232 TIGR02785 addA_Gpos recombinat 63.1 29 0.00062 46.4 9.8 117 4-136 3-126 (1232)
233 PHA02533 17 large terminase pr 62.8 50 0.0011 40.2 10.9 68 3-70 60-131 (534)
234 KOG0991 Replication factor C, 62.0 5.5 0.00012 43.5 2.4 39 103-142 91-129 (333)
235 PRK05728 DNA polymerase III su 61.8 26 0.00056 35.1 7.1 52 334-385 10-65 (142)
236 KOG0390 DNA repair protein, SN 61.6 12 0.00026 47.0 5.6 53 16-72 264-323 (776)
237 PF03354 Terminase_1: Phage Te 61.1 29 0.00062 41.3 8.5 105 19-138 26-136 (477)
238 PLN03025 replication factor C 60.3 17 0.00037 40.7 6.1 14 125-138 99-112 (319)
239 PF02572 CobA_CobO_BtuR: ATP:c 60.2 23 0.0005 36.8 6.5 32 19-50 5-38 (172)
240 PF13872 AAA_34: P-loop contai 60.1 14 0.0003 41.7 5.2 114 19-138 66-185 (303)
241 PRK06067 flagellar accessory p 59.9 9.9 0.00021 40.4 4.0 48 5-54 15-64 (234)
242 COG2927 HolC DNA polymerase II 59.6 19 0.0004 36.5 5.5 80 331-423 6-93 (144)
243 PRK05298 excinuclease ABC subu 59.4 25 0.00053 43.7 7.8 64 2-68 12-82 (652)
244 PRK13869 plasmid-partitioning 59.4 10 0.00022 44.3 4.3 33 19-51 126-158 (405)
245 PRK00411 cdc6 cell division co 59.4 13 0.00027 42.6 5.0 32 19-52 59-92 (394)
246 KOG0386 Chromatin remodeling c 59.2 19 0.00041 46.1 6.6 120 1-137 395-527 (1157)
247 TIGR03371 cellulose_yhjQ cellu 59.2 12 0.00026 39.7 4.4 34 20-53 7-40 (246)
248 PF06733 DEAD_2: DEAD_2; Inte 58.8 7.1 0.00015 39.7 2.6 46 85-138 113-158 (174)
249 cd02117 NifH_like This family 58.8 11 0.00023 39.6 4.0 28 23-50 8-35 (212)
250 PRK10919 ATP-dependent DNA hel 58.5 30 0.00066 43.1 8.4 108 1-136 1-113 (672)
251 PF03237 Terminase_6: Terminas 57.8 1E+02 0.0023 33.8 11.8 51 19-69 1-57 (384)
252 TIGR01281 DPOR_bchL light-inde 57.3 11 0.00024 40.8 3.9 29 23-51 8-36 (268)
253 TIGR03453 partition_RepA plasm 57.3 12 0.00026 43.3 4.3 33 19-51 109-141 (387)
254 TIGR02237 recomb_radB DNA repa 57.3 50 0.0011 34.2 8.6 38 16-53 11-50 (209)
255 PRK13235 nifH nitrogenase redu 57.0 12 0.00026 40.8 4.2 28 23-50 9-36 (274)
256 PRK10037 cell division protein 56.7 13 0.00028 40.1 4.2 35 19-53 6-40 (250)
257 cd02035 ArsA ArsA ATPase funct 56.6 13 0.00029 39.2 4.3 31 22-52 6-36 (217)
258 TIGR02768 TraA_Ti Ti-type conj 56.5 38 0.00082 42.8 8.8 57 5-61 355-414 (744)
259 PRK14088 dnaA chromosomal repl 56.3 22 0.00049 42.0 6.4 14 125-138 194-207 (440)
260 TIGR01969 minD_arch cell divis 55.9 14 0.0003 39.1 4.3 33 19-51 5-37 (251)
261 PRK11054 helD DNA helicase IV; 55.7 33 0.00073 42.9 8.1 84 5-110 199-286 (684)
262 COG3421 Uncharacterized protei 55.6 9.5 0.00021 46.4 3.2 113 20-137 2-124 (812)
263 COG0210 UvrD Superfamily I DNA 55.1 5E+02 0.011 32.1 20.9 106 4-136 4-113 (655)
264 PRK13230 nitrogenase reductase 55.1 12 0.00027 40.8 3.8 27 23-49 9-35 (279)
265 cd03111 CpaE_like This protein 54.7 17 0.00037 34.1 4.2 36 19-54 4-40 (106)
266 PHA02518 ParA-like protein; Pr 54.1 16 0.00034 37.6 4.2 33 20-52 6-38 (211)
267 PRK13705 plasmid-partitioning 53.9 14 0.0003 43.0 4.1 32 19-50 111-142 (388)
268 PF02374 ArsA_ATPase: Anion-tr 53.0 16 0.00034 41.1 4.3 32 23-54 9-40 (305)
269 PHA02519 plasmid partition pro 52.6 15 0.00033 42.7 4.2 32 19-50 111-142 (387)
270 TIGR03029 EpsG chain length de 52.5 16 0.00034 39.8 4.1 34 19-52 108-141 (274)
271 PRK05973 replicative DNA helic 52.2 21 0.00047 38.8 5.0 42 8-51 57-100 (237)
272 PRK14723 flhF flagellar biosyn 52.0 40 0.00086 42.7 7.8 77 23-103 193-276 (767)
273 KOG0925 mRNA splicing factor A 52.0 20 0.00043 42.8 4.8 101 15-136 60-170 (699)
274 TIGR02928 orc1/cdc6 family rep 51.8 18 0.00039 40.8 4.5 14 125-138 129-142 (365)
275 KOG0391 SNF2 family DNA-depend 51.5 27 0.00059 45.6 6.2 97 25-137 644-749 (1958)
276 cd02040 NifH NifH gene encodes 51.5 18 0.0004 38.8 4.4 28 23-50 9-36 (270)
277 cd02036 MinD Bacterial cell di 51.4 20 0.00043 35.7 4.4 30 20-49 5-34 (179)
278 cd00550 ArsA_ATPase Oxyanion-t 51.0 16 0.00036 39.7 3.9 31 23-53 8-38 (254)
279 PRK13232 nifH nitrogenase redu 50.9 18 0.00039 39.4 4.2 30 22-51 8-37 (273)
280 COG3598 RepA RecA-family ATPas 50.6 23 0.0005 40.5 4.9 59 19-77 93-160 (402)
281 PF13086 AAA_11: AAA domain; P 50.5 57 0.0012 33.4 7.7 61 5-65 4-75 (236)
282 PTZ00112 origin recognition co 50.4 15 0.00033 47.0 3.9 14 125-138 869-882 (1164)
283 PRK08760 replicative DNA helic 49.8 67 0.0014 38.5 9.0 112 14-137 226-351 (476)
284 COG1192 Soj ATPases involved i 49.8 20 0.00044 38.5 4.4 32 19-50 7-39 (259)
285 PRK07993 DNA polymerase III su 49.3 1.1E+02 0.0024 34.9 10.4 57 93-172 75-135 (334)
286 TIGR00347 bioD dethiobiotin sy 48.9 22 0.00047 35.5 4.2 31 19-49 2-32 (166)
287 PRK10818 cell division inhibit 48.6 22 0.00047 38.5 4.4 34 19-52 7-40 (270)
288 PRK13234 nifH nitrogenase redu 48.3 21 0.00045 39.8 4.3 30 22-51 11-40 (295)
289 PRK13236 nitrogenase reductase 48.3 19 0.00041 40.1 3.9 30 23-52 14-43 (296)
290 PRK14719 bifunctional RNAse/5- 47.9 61 0.0013 37.5 8.1 74 336-416 7-82 (360)
291 PRK05580 primosome assembly pr 47.7 70 0.0015 40.1 9.1 76 337-413 174-251 (679)
292 TIGR01287 nifH nitrogenase iro 47.7 19 0.0004 39.3 3.7 28 23-50 8-35 (275)
293 PRK14964 DNA polymerase III su 47.4 38 0.00081 40.8 6.4 26 19-44 39-65 (491)
294 TIGR01074 rep ATP-dependent DN 47.3 61 0.0013 40.1 8.5 105 5-137 4-113 (664)
295 PRK13849 putative crown gall t 46.7 23 0.00049 38.2 4.1 33 19-51 6-38 (231)
296 CHL00175 minD septum-site dete 46.6 23 0.00049 38.7 4.2 31 19-49 20-50 (281)
297 PF05127 Helicase_RecD: Helica 46.6 3.9 8.5E-05 42.6 -1.6 55 20-74 2-57 (177)
298 TIGR00595 priA primosomal prot 46.6 60 0.0013 39.2 8.1 64 347-411 19-84 (505)
299 KOG0338 ATP-dependent RNA heli 46.6 28 0.00062 41.8 5.1 64 32-99 415-484 (691)
300 PRK12323 DNA polymerase III su 46.3 33 0.00071 42.8 5.8 13 125-137 124-136 (700)
301 PF01695 IstB_IS21: IstB-like 46.2 25 0.00055 36.3 4.2 37 19-55 51-87 (178)
302 TIGR00609 recB exodeoxyribonuc 45.7 44 0.00095 44.1 7.2 55 16-70 9-73 (1087)
303 COG1875 NYN ribonuclease and A 45.6 17 0.00036 42.2 3.0 70 2-71 227-315 (436)
304 cd02033 BchX Chlorophyllide re 45.6 22 0.00047 40.6 4.0 30 22-51 38-67 (329)
305 CHL00072 chlL photochlorophyll 45.4 22 0.00048 39.6 3.9 29 23-51 8-36 (290)
306 COG0552 FtsY Signal recognitio 45.3 87 0.0019 36.0 8.5 52 24-76 148-199 (340)
307 PF05970 PIF1: PIF1-like helic 45.3 17 0.00036 41.8 3.0 59 15-75 20-81 (364)
308 PRK12422 chromosomal replicati 45.3 66 0.0014 38.2 8.0 13 125-137 202-214 (445)
309 PRK12724 flagellar biosynthesi 45.2 53 0.0012 38.9 7.1 52 23-75 231-283 (432)
310 COG1484 DnaC DNA replication p 44.7 25 0.00055 38.5 4.2 35 19-54 109-144 (254)
311 cd01983 Fer4_NifH The Fer4_Nif 44.6 36 0.00079 29.5 4.5 28 23-50 7-34 (99)
312 PF00004 AAA: ATPase family as 44.6 53 0.0012 30.6 5.9 65 23-138 6-71 (132)
313 PRK07764 DNA polymerase III su 44.4 28 0.00061 44.5 5.0 14 125-138 120-133 (824)
314 KOG1015 Transcription regulato 44.4 28 0.00061 44.5 4.8 138 17-166 698-874 (1567)
315 PRK11823 DNA repair protein Ra 44.3 1.2E+02 0.0026 36.1 9.9 88 19-140 84-171 (446)
316 cd01121 Sms Sms (bacterial rad 44.0 1E+02 0.0022 35.9 9.1 39 16-54 81-121 (372)
317 PRK13233 nifH nitrogenase redu 43.9 26 0.00057 38.1 4.2 30 19-49 7-37 (275)
318 PRK09361 radB DNA repair and r 43.9 90 0.002 32.8 8.1 37 16-52 22-60 (225)
319 PRK04596 minC septum formation 43.7 14 0.0003 40.6 1.9 44 551-605 171-216 (248)
320 PRK14956 DNA polymerase III su 43.5 33 0.00071 41.2 5.1 13 125-137 121-133 (484)
321 PF14417 MEDS: MEDS: MEthanoge 43.3 53 0.0011 34.1 6.1 54 326-379 20-73 (191)
322 PRK04523 N-acetylornithine car 43.3 1.3E+02 0.0029 34.4 9.8 91 4-99 148-252 (335)
323 PRK00339 minC septum formation 43.2 14 0.0003 40.5 1.9 45 550-605 171-217 (249)
324 PRK11670 antiporter inner memb 42.3 28 0.00061 40.2 4.3 37 19-55 112-148 (369)
325 PRK12377 putative replication 41.7 33 0.00071 37.6 4.4 37 19-56 105-142 (248)
326 PRK13231 nitrogenase reductase 41.6 16 0.00034 39.5 2.0 29 19-49 7-35 (264)
327 PRK05595 replicative DNA helic 41.4 1.2E+02 0.0025 36.0 9.3 111 15-137 199-323 (444)
328 KOG0388 SNF2 family DNA-depend 41.3 1.3E+02 0.0027 38.0 9.3 115 19-152 590-733 (1185)
329 PF13361 UvrD_C: UvrD-like hel 41.3 1.3E+02 0.0027 32.9 9.0 55 331-385 52-109 (351)
330 TIGR03018 pepcterm_TyrKin exop 41.2 32 0.00069 36.0 4.1 32 22-53 43-75 (207)
331 PRK06871 DNA polymerase III su 41.0 1.2E+02 0.0025 34.8 8.8 57 93-172 75-134 (325)
332 PF06745 KaiC: KaiC; InterPro 41.0 24 0.00051 37.2 3.2 35 19-53 23-58 (226)
333 COG0003 ArsA Predicted ATPase 40.7 28 0.00061 39.6 3.9 33 23-55 10-42 (322)
334 COG3973 Superfamily I DNA and 40.3 34 0.00074 42.0 4.6 51 19-73 230-286 (747)
335 COG1435 Tdk Thymidine kinase [ 40.0 83 0.0018 33.6 6.9 27 25-51 14-40 (201)
336 PRK08116 hypothetical protein; 40.0 31 0.00068 38.0 4.0 37 18-55 117-154 (268)
337 PRK13886 conjugal transfer pro 39.8 35 0.00075 37.4 4.2 33 19-51 7-39 (241)
338 PRK07413 hypothetical protein; 39.5 79 0.0017 37.0 7.2 31 19-49 21-59 (382)
339 PRK07952 DNA replication prote 39.3 36 0.00078 37.2 4.3 38 17-55 101-139 (244)
340 PRK14949 DNA polymerase III su 38.7 56 0.0012 42.1 6.3 14 125-138 119-132 (944)
341 PRK04195 replication factor C 38.6 67 0.0014 38.4 6.7 14 125-138 98-111 (482)
342 KOG1002 Nucleotide excision re 37.9 94 0.002 37.5 7.4 117 16-138 205-329 (791)
343 COG0541 Ffh Signal recognition 37.8 1.2E+02 0.0025 36.2 8.3 58 24-83 109-167 (451)
344 COG0489 Mrp ATPases involved i 37.8 33 0.00071 37.8 3.7 33 19-51 62-94 (265)
345 cd02028 UMPK_like Uridine mono 37.8 37 0.00081 34.9 4.0 35 23-57 7-41 (179)
346 TIGR00665 DnaB replicative DNA 37.8 1.9E+02 0.004 33.9 10.2 111 15-137 193-317 (434)
347 cd01523 RHOD_Lact_B Member of 37.8 57 0.0012 29.7 4.8 36 350-385 58-93 (100)
348 PRK04516 minC septum formation 37.8 19 0.00041 39.2 1.8 45 550-605 155-201 (235)
349 PRK13342 recombination factor 37.7 57 0.0012 38.1 5.9 14 125-138 92-105 (413)
350 TIGR03600 phage_DnaB phage rep 37.5 1.3E+02 0.0029 35.1 8.9 113 14-137 191-317 (421)
351 PF06862 DUF1253: Protein of u 37.0 27 0.00058 41.5 3.0 43 89-139 129-175 (442)
352 PF12846 AAA_10: AAA-like doma 36.9 78 0.0017 33.9 6.5 51 19-77 5-55 (304)
353 TIGR03015 pepcterm_ATPase puta 36.8 48 0.0011 35.5 4.8 51 19-73 47-98 (269)
354 COG4626 Phage terminase-like p 36.7 1E+02 0.0022 37.7 7.7 52 19-70 90-145 (546)
355 PRK12727 flagellar biosynthesi 36.5 81 0.0018 38.6 6.9 53 23-76 358-412 (559)
356 TIGR03877 thermo_KaiC_1 KaiC d 36.2 34 0.00074 36.6 3.5 57 5-64 11-69 (237)
357 PRK07994 DNA polymerase III su 35.9 40 0.00087 41.9 4.4 13 125-137 119-131 (647)
358 PHA03333 putative ATPase subun 35.7 1.4E+02 0.003 37.7 8.7 53 19-71 191-244 (752)
359 PRK14948 DNA polymerase III su 35.6 46 0.001 41.2 4.9 33 102-137 101-133 (620)
360 KOG1132 Helicase of the DEAD s 35.3 29 0.00063 44.1 3.0 46 87-142 218-263 (945)
361 cd02038 FleN-like FleN is a me 35.2 51 0.0011 32.3 4.3 34 20-53 5-38 (139)
362 PF03796 DnaB_C: DnaB-like hel 35.2 69 0.0015 34.6 5.7 112 15-137 17-142 (259)
363 PRK03511 minC septum formation 35.2 22 0.00047 38.6 1.8 45 551-606 151-197 (228)
364 smart00489 DEXDc3 DEAD-like he 34.9 29 0.00064 38.6 2.8 45 85-138 205-249 (289)
365 smart00488 DEXDc2 DEAD-like he 34.9 29 0.00064 38.6 2.8 45 85-138 205-249 (289)
366 PLN02229 alpha-galactosidase 34.7 1.9E+02 0.0042 34.4 9.5 118 216-361 87-216 (427)
367 PRK01973 septum formation inhi 34.6 23 0.00049 39.5 1.8 44 551-605 191-236 (271)
368 PRK14951 DNA polymerase III su 34.5 43 0.00093 41.5 4.3 14 125-138 124-137 (618)
369 PRK14952 DNA polymerase III su 34.4 49 0.0011 40.7 4.8 14 125-138 118-131 (584)
370 PHA02544 44 clamp loader, smal 34.0 56 0.0012 36.2 4.9 13 125-137 100-112 (316)
371 TIGR00604 rad3 DNA repair heli 33.6 2.8E+02 0.006 35.0 11.3 63 4-66 12-83 (705)
372 cd01393 recA_like RecA is a b 33.4 1.2E+02 0.0027 31.6 7.1 54 16-72 18-79 (226)
373 PF13344 Hydrolase_6: Haloacid 33.4 75 0.0016 29.7 4.9 38 343-380 20-58 (101)
374 PHA02542 41 41 helicase; Provi 33.1 64 0.0014 38.7 5.4 45 15-59 188-237 (473)
375 PRK14873 primosome assembly pr 33.0 1.8E+02 0.0038 36.6 9.3 76 337-413 172-250 (665)
376 TIGR03880 KaiC_arch_3 KaiC dom 33.0 86 0.0019 33.0 5.8 35 19-53 20-54 (224)
377 PRK11519 tyrosine kinase; Prov 33.0 40 0.00086 42.4 3.8 32 21-52 533-564 (719)
378 PRK07667 uridine kinase; Provi 32.9 52 0.0011 34.2 4.1 38 21-59 23-61 (193)
379 TIGR00174 miaA tRNA isopenteny 32.8 56 0.0012 36.7 4.6 70 291-361 4-97 (287)
380 PRK06526 transposase; Provisio 32.7 31 0.00068 37.8 2.5 37 19-55 102-138 (254)
381 PF01408 GFO_IDH_MocA: Oxidore 32.4 87 0.0019 29.2 5.2 88 290-382 27-118 (120)
382 PRK09183 transposase/IS protei 32.2 55 0.0012 35.9 4.4 36 19-54 106-141 (259)
383 PF01113 DapB_N: Dihydrodipico 31.5 1.3E+02 0.0028 29.1 6.3 108 291-412 5-124 (124)
384 PRK02102 ornithine carbamoyltr 31.1 1.7E+02 0.0036 33.7 8.0 90 3-99 134-232 (331)
385 PRK07471 DNA polymerase III su 31.1 1.1E+02 0.0023 35.6 6.6 22 19-40 45-67 (365)
386 COG1565 Uncharacterized conser 31.0 98 0.0021 36.0 6.1 49 18-67 80-133 (370)
387 PRK09841 cryptic autophosphory 30.9 44 0.00094 42.1 3.7 32 21-52 538-569 (726)
388 PRK14958 DNA polymerase III su 30.8 54 0.0012 39.6 4.3 14 125-138 119-132 (509)
389 PRK06090 DNA polymerase III su 30.6 2.2E+02 0.0048 32.4 8.9 57 93-172 75-135 (319)
390 PRK14963 DNA polymerase III su 30.4 88 0.0019 37.8 6.0 13 125-137 116-128 (504)
391 PRK00030 minC septum formation 30.4 29 0.00063 39.0 1.8 44 551-605 213-258 (292)
392 cd00984 DnaB_C DnaB helicase C 30.0 73 0.0016 33.7 4.7 37 15-51 11-50 (242)
393 TIGR03881 KaiC_arch_4 KaiC dom 30.0 1E+02 0.0022 32.5 5.7 37 15-51 18-56 (229)
394 TIGR01005 eps_transp_fam exopo 29.7 48 0.001 41.7 3.8 34 19-52 551-584 (754)
395 PRK05896 DNA polymerase III su 29.7 71 0.0015 39.5 5.0 42 93-137 89-131 (605)
396 PRK08939 primosomal protein Dn 29.4 65 0.0014 36.4 4.4 38 17-55 158-196 (306)
397 TIGR00416 sms DNA repair prote 29.2 3E+02 0.0064 33.0 10.0 38 16-53 93-132 (454)
398 PRK04804 minC septum formation 29.0 32 0.0007 37.0 1.8 44 551-605 143-188 (221)
399 PRK03515 ornithine carbamoyltr 28.9 2.5E+02 0.0054 32.3 9.0 88 3-99 133-233 (336)
400 PRK10876 recB exonuclease V su 28.7 1.2E+02 0.0026 40.6 7.2 54 16-70 17-88 (1181)
401 KOG1131 RNA polymerase II tran 28.6 73 0.0016 38.6 4.6 38 4-41 18-63 (755)
402 COG1074 RecB ATP-dependent exo 28.4 85 0.0018 41.8 5.8 54 15-69 16-79 (1139)
403 COG2519 GCD14 tRNA(1-methylade 28.4 1E+02 0.0022 34.2 5.5 52 327-379 163-214 (256)
404 PF07015 VirC1: VirC1 protein; 28.3 69 0.0015 34.9 4.2 37 21-57 8-46 (231)
405 PRK05636 replicative DNA helic 28.3 2.8E+02 0.006 33.7 9.6 110 15-136 263-386 (505)
406 KOG0739 AAA+-type ATPase [Post 28.2 1.7E+02 0.0038 33.5 7.2 94 248-363 127-234 (439)
407 PLN02748 tRNA dimethylallyltra 28.0 1.2E+02 0.0027 36.3 6.6 71 291-361 27-120 (468)
408 PRK08691 DNA polymerase III su 27.9 80 0.0017 39.7 5.1 34 101-137 98-131 (709)
409 PRK14960 DNA polymerase III su 27.9 94 0.002 39.0 5.6 13 125-137 118-130 (702)
410 PRK09302 circadian clock prote 27.9 3E+02 0.0065 33.1 9.9 38 16-53 272-311 (509)
411 PF01935 DUF87: Domain of unkn 27.8 67 0.0014 33.9 4.0 39 16-54 23-63 (229)
412 PRK06646 DNA polymerase III su 27.7 1.1E+02 0.0025 31.2 5.4 52 333-384 9-64 (154)
413 PF02698 DUF218: DUF218 domain 27.7 2.3E+02 0.005 27.9 7.6 76 332-411 19-106 (155)
414 cd01524 RHOD_Pyr_redox Member 27.5 1.3E+02 0.0029 26.7 5.4 36 351-386 49-84 (90)
415 TIGR03158 cas3_cyano CRISPR-as 27.4 2.4E+02 0.0053 32.2 8.7 56 42-99 271-326 (357)
416 COG0470 HolB ATPase involved i 27.1 1.2E+02 0.0025 33.3 5.9 16 125-140 109-124 (325)
417 COG3640 CooC CO dehydrogenase 26.9 64 0.0014 35.5 3.6 44 23-75 8-52 (255)
418 CHL00095 clpC Clp protease ATP 26.8 56 0.0012 41.8 3.7 30 19-50 543-572 (821)
419 COG0513 SrmB Superfamily II DN 26.8 3.8E+02 0.0082 32.5 10.5 66 30-99 260-331 (513)
420 PF13614 AAA_31: AAA domain; P 26.8 82 0.0018 30.7 4.1 45 22-74 8-52 (157)
421 PHA03372 DNA packaging termina 26.7 1.9E+02 0.0042 35.9 7.9 55 19-73 206-263 (668)
422 COG0794 GutQ Predicted sugar p 26.7 4.7E+02 0.01 28.1 9.9 85 12-101 35-140 (202)
423 PRK13107 preprotein translocas 26.5 1.9E+02 0.0042 37.5 8.1 55 41-99 447-505 (908)
424 COG2805 PilT Tfp pilus assembl 26.5 51 0.0011 37.5 2.8 37 15-53 124-162 (353)
425 TIGR03815 CpaE_hom_Actino heli 26.4 76 0.0016 35.6 4.3 34 19-52 98-131 (322)
426 TIGR01222 minC septum site-det 26.3 39 0.00084 36.2 1.9 45 550-605 140-186 (217)
427 PRK06835 DNA replication prote 26.2 76 0.0017 36.2 4.3 37 17-54 185-222 (329)
428 PRK14969 DNA polymerase III su 26.2 69 0.0015 38.9 4.1 13 125-137 119-131 (527)
429 TIGR00614 recQ_fam ATP-depende 26.1 2E+02 0.0044 34.1 8.0 69 28-100 211-285 (470)
430 TIGR02524 dot_icm_DotB Dot/Icm 26.1 95 0.002 35.9 5.0 47 7-53 125-173 (358)
431 PRK13768 GTPase; Provisional 26.1 71 0.0015 34.9 3.8 29 23-52 10-39 (253)
432 TIGR03878 thermo_KaiC_2 KaiC d 25.9 1.5E+02 0.0033 32.3 6.4 37 16-52 35-73 (259)
433 KOG2036 Predicted P-loop ATPas 25.9 65 0.0014 40.2 3.7 100 21-137 281-391 (1011)
434 TIGR01313 therm_gnt_kin carboh 25.7 5.4E+02 0.012 25.3 9.9 93 291-385 3-100 (163)
435 PRK09200 preprotein translocas 25.7 1.9E+02 0.0041 37.0 7.9 55 41-99 426-484 (790)
436 smart00450 RHOD Rhodanese Homo 25.6 1.1E+02 0.0024 26.6 4.4 37 350-386 53-90 (100)
437 PF10861 DUF2784: Protein of U 25.6 36 0.00077 33.1 1.3 19 572-590 57-75 (112)
438 TIGR03345 VI_ClpV1 type VI sec 25.3 96 0.0021 40.0 5.4 32 19-52 600-631 (852)
439 PRK05563 DNA polymerase III su 25.1 1.1E+02 0.0023 37.5 5.5 13 125-137 119-131 (559)
440 KOG0388 SNF2 family DNA-depend 25.0 1.8E+02 0.0039 36.7 7.1 87 332-419 1023-1111(1185)
441 PF06564 YhjQ: YhjQ protein; 24.8 90 0.002 34.3 4.3 33 19-52 6-39 (243)
442 PF13307 Helicase_C_2: Helicas 24.8 1.6E+02 0.0035 29.9 5.9 66 352-420 8-78 (167)
443 PRK06731 flhF flagellar biosyn 24.6 1.6E+02 0.0034 32.8 6.2 51 24-75 84-134 (270)
444 TIGR01279 DPOR_bchN light-inde 24.5 3.7E+02 0.008 31.5 9.6 91 283-384 78-186 (407)
445 PRK06645 DNA polymerase III su 24.5 1.2E+02 0.0026 36.8 5.7 34 101-137 107-140 (507)
446 PRK04537 ATP-dependent RNA hel 24.3 2.2E+02 0.0047 35.0 7.9 60 36-99 250-315 (572)
447 PF05889 SLA_LP_auto_ag: Solub 24.3 1E+02 0.0022 36.2 4.8 88 309-406 121-214 (389)
448 PRK05177 minC septum formation 24.3 42 0.00092 36.5 1.7 44 551-605 162-207 (239)
449 PTZ00007 (NAP-L) nucleosome as 24.2 1.8E+02 0.004 33.5 6.8 46 632-677 43-88 (337)
450 PTZ00035 Rad51 protein; Provis 24.2 1.6E+02 0.0034 33.7 6.3 102 16-138 117-226 (337)
451 PRK11034 clpA ATP-dependent Cl 24.0 1E+02 0.0022 39.3 5.1 13 125-137 557-569 (758)
452 PRK04837 ATP-dependent RNA hel 23.8 2.5E+02 0.0054 32.7 8.1 58 38-99 250-313 (423)
453 PF00956 NAP: Nucleosome assem 23.8 2.2E+02 0.0048 30.9 7.1 46 633-678 5-50 (244)
454 PRK14962 DNA polymerase III su 23.7 1.2E+02 0.0025 36.5 5.4 13 125-137 117-129 (472)
455 PRK10689 transcription-repair 23.6 2.7E+02 0.0058 37.3 9.0 79 41-137 807-891 (1147)
456 KOG1132 Helicase of the DEAD s 23.4 58 0.0012 41.6 2.7 33 2-34 21-59 (945)
457 PF02670 DXP_reductoisom: 1-de 23.1 2.1E+02 0.0046 28.5 6.2 76 291-385 3-78 (129)
458 PRK09111 DNA polymerase III su 23.1 1.4E+02 0.0029 37.1 5.9 35 100-137 110-144 (598)
459 PRK10436 hypothetical protein; 23.1 1.2E+02 0.0025 36.4 5.2 37 15-53 217-254 (462)
460 PRK05986 cob(I)alamin adenolsy 22.8 1.5E+02 0.0032 31.5 5.3 35 15-50 21-57 (191)
461 PRK08451 DNA polymerase III su 22.7 1.5E+02 0.0032 36.3 5.9 45 91-138 85-130 (535)
462 PRK14957 DNA polymerase III su 22.7 1.3E+02 0.0028 36.9 5.5 13 125-137 119-131 (546)
463 TIGR02655 circ_KaiC circadian 22.6 2.5E+02 0.0054 33.7 7.9 34 19-52 267-300 (484)
464 PF05707 Zot: Zonular occluden 22.6 88 0.0019 32.5 3.6 28 22-50 7-34 (193)
465 cd01528 RHOD_2 Member of the R 22.6 3.4E+02 0.0074 24.6 7.2 36 351-386 56-92 (101)
466 PRK14805 ornithine carbamoyltr 22.4 4E+02 0.0086 30.2 8.9 88 3-99 126-222 (302)
467 COG0329 DapA Dihydrodipicolina 22.4 3.4E+02 0.0073 30.6 8.4 119 291-415 77-216 (299)
468 PRK11057 ATP-dependent DNA hel 22.3 2.1E+02 0.0046 35.3 7.3 61 36-100 229-295 (607)
469 PRK06964 DNA polymerase III su 22.0 3E+02 0.0064 31.8 8.0 28 125-172 132-159 (342)
470 PRK09112 DNA polymerase III su 22.0 2.6E+02 0.0055 32.3 7.5 13 125-137 141-153 (351)
471 PF13177 DNA_pol3_delta2: DNA 21.8 2.4E+02 0.0053 28.5 6.5 58 92-172 68-129 (162)
472 PRK01713 ornithine carbamoyltr 21.8 4E+02 0.0086 30.6 8.9 88 3-99 134-233 (334)
473 PF06823 DUF1236: Protein of u 21.7 79 0.0017 27.9 2.5 22 227-248 40-61 (65)
474 PF09413 DUF2007: Domain of un 21.7 1E+02 0.0023 26.3 3.3 29 357-385 3-31 (67)
475 TIGR00635 ruvB Holliday juncti 21.7 1.2E+02 0.0026 33.3 4.7 13 125-137 81-93 (305)
476 PRK06893 DNA replication initi 21.6 1.6E+02 0.0034 31.5 5.4 76 291-367 44-138 (229)
477 PRK04328 hypothetical protein; 21.5 1.9E+02 0.0041 31.4 6.0 38 16-53 22-61 (249)
478 cd01126 TraG_VirD4 The TraG/Tr 21.5 68 0.0015 36.9 2.7 55 19-79 3-57 (384)
479 cd01394 radB RadB. The archaea 21.4 2.1E+02 0.0045 29.9 6.2 38 16-53 18-57 (218)
480 cd04867 TGS_YchF_C TGS_YchF_C: 21.4 1.3E+02 0.0027 28.0 3.8 24 217-240 58-81 (83)
481 COG0324 MiaA tRNA delta(2)-iso 21.4 2.6E+02 0.0057 31.9 7.2 70 291-361 8-101 (308)
482 cd01521 RHOD_PspE2 Member of t 21.2 1.5E+02 0.0031 27.7 4.5 37 350-386 61-99 (110)
483 COG1196 Smc Chromosome segrega 21.0 90 0.002 41.6 4.1 19 124-143 1087-1105(1163)
484 cd03028 GRX_PICOT_like Glutare 21.0 2.8E+02 0.0061 25.2 6.2 51 353-404 7-63 (90)
485 PF15609 PRTase_2: Phosphoribo 20.8 1.6E+02 0.0035 31.3 5.1 52 26-77 133-184 (191)
486 PF13086 AAA_11: AAA domain; P 20.7 53 0.0012 33.6 1.6 38 89-138 168-205 (236)
487 PF13245 AAA_19: Part of AAA d 20.7 1.6E+02 0.0034 26.3 4.3 33 341-373 26-62 (76)
488 PRK11192 ATP-dependent RNA hel 20.6 2.7E+02 0.006 32.4 7.6 54 42-99 244-303 (434)
489 PF06071 YchF-GTPase_C: Protei 20.5 57 0.0012 30.3 1.5 24 217-240 57-81 (84)
490 PRK14959 DNA polymerase III su 20.5 2E+02 0.0043 35.9 6.5 14 125-138 119-132 (624)
491 KOG0926 DEAH-box RNA helicase 20.4 81 0.0018 40.1 3.1 81 290-376 416-504 (1172)
492 PRK14016 cyanophycin synthetas 20.4 2.2E+02 0.0048 36.1 7.1 30 22-51 484-514 (727)
493 KOG4439 RNA polymerase II tran 20.4 1.8E+02 0.0038 36.7 5.8 117 15-137 345-475 (901)
494 TIGR03316 ygeW probable carbam 20.3 4.2E+02 0.0092 30.8 8.8 92 3-99 146-253 (357)
495 COG0455 flhG Antiactivator of 20.1 1.2E+02 0.0026 33.5 4.2 48 19-74 7-55 (262)
496 PF00148 Oxidored_nitro: Nitro 20.1 4.5E+02 0.0098 30.2 9.1 59 44-103 145-204 (398)
497 KOG0342 ATP-dependent RNA heli 20.1 2.6E+02 0.0056 33.9 6.9 37 561-597 401-437 (543)
No 1
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=2.5e-225 Score=1962.88 Aligned_cols=820 Identities=49% Similarity=0.784 Sum_probs=724.8
Q ss_pred CCCchhHHHHHHHHhcCCeEEecCCCchHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCC
Q 002515 1 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRG 80 (913)
Q Consensus 1 ~rp~dvQl~g~l~L~~G~IaEm~TGEGKTLva~lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLsv~~i~~~ 80 (913)
|||||||++||++||+|+||||+||||||||++||+|++||+|++|||||+|||||+||++||+|||+|||||||++.++
T Consensus 84 ~r~ydVQliGgl~Lh~G~IAEM~TGEGKTL~atlpaylnAL~GkgVhVVTvNdYLA~RDae~m~~vy~~LGLtvg~i~~~ 163 (939)
T PRK12902 84 MRHFDVQLIGGMVLHEGQIAEMKTGEGKTLVATLPSYLNALTGKGVHVVTVNDYLARRDAEWMGQVHRFLGLSVGLIQQD 163 (939)
T ss_pred CCcchhHHHhhhhhcCCceeeecCCCChhHHHHHHHHHHhhcCCCeEEEeCCHHHHHhHHHHHHHHHHHhCCeEEEECCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHhccCCCeEEECCCcchhhHHHHhhccchhhhhccCCCCceEEEeecchhhhhccCCCceeccCCCCCCccchH
Q 002515 81 MIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYP 160 (913)
Q Consensus 81 ~~~~~r~~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~tPLiiSg~~~~~~~~y~ 160 (913)
+++++|+.+|.||||||||++||||||||||+.+.++.++| +++|||||||||||||||||||||||+...+...|.
T Consensus 164 ~~~~err~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR---~~~faIVDEvDSILIDEArTPLIISg~~~~~~~~y~ 240 (939)
T PRK12902 164 MSPEERKKNYACDITYATNSELGFDYLRDNMATDISEVVQR---PFNYCVIDEVDSILIDEARTPLIISGQVERPQEKYQ 240 (939)
T ss_pred CChHHHHHhcCCCeEEecCCcccccchhhhhcccccccccC---ccceEEEecccceeeccCCCcccccCCCccchHHHH
Confidence 99999999999999999999999999999999988889998 999999999999999999999999999998889999
Q ss_pred HHHHHHHHhcc------CCCeEEeCCCCeeeccHhhHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHhhccCcceEEEC
Q 002515 161 VAAKVAELLVQ------GLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVRN 234 (913)
Q Consensus 161 ~~~~~v~~l~~------~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~l~~~i~~Al~A~~l~~~d~dYiV~d 234 (913)
.++.+++.|.+ +.||.+|++.++++||++|+.++|.++++.|||++.++|.+||.+||+|+++|++|+||||+|
T Consensus 241 ~~~~~~~~L~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~~~i~nLy~~~~~~~~~i~~AL~A~~lf~~d~dYiV~d 320 (939)
T PRK12902 241 KAAEVAAALQRKDGIDPEGDYEVDEKQRNVLLTDEGFAKAEQLLGVSDLFDPQDPWAHYIFNALKAKELFIKDVNYIVRN 320 (939)
T ss_pred HHHHHHHHhhhhcccCCCCCeEEecCCCeeeEcHHHHHHHHHHhCchhhcCcccHHHHHHHHHHHHHHHHhcCCeEEEEC
Confidence 99999999988 779999999999999999999999999999999988899999999999999999999999999
Q ss_pred CeEEEEeCCCCccccCcccChhhhHHHHhHhCCcccCCceeeeeeeehhHHhhcCcccccCCCcccHHHHHHHHhCCCeE
Q 002515 235 GKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPVI 314 (913)
Q Consensus 235 g~V~iVD~~TGR~~~gr~ws~GLHQaieaKEgv~i~~e~~t~a~IT~q~~F~~Y~kL~GmTGTa~te~~Ef~~iY~l~vv 314 (913)
|+|+|||++|||+|+||+||+||||||||||||+|+++++|+|+|||||||++|++|+||||||++++.||+++||++|+
T Consensus 321 g~V~IVDe~TGR~m~grrws~GLHQaIEaKE~v~it~e~~tlAsIT~QnfFr~Y~kLsGMTGTa~te~~Ef~~iY~l~Vv 400 (939)
T PRK12902 321 GEVVIVDEFTGRVMPGRRWSDGLHQAIEAKEGVEIQPETQTLASITYQNFFLLYPKLAGMTGTAKTEEVEFEKTYKLEVT 400 (939)
T ss_pred CEEEEEECCCCCCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCCHHHHHHHHHHhCCcEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEeccCCcchhhHH
Q 002515 315 EVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREA 394 (913)
Q Consensus 315 ~IPt~~p~~R~d~~d~v~~t~~~k~~aii~ei~~~~~~grPVLI~t~Si~~SE~ls~~L~~~gi~~~vLnA~~k~~~~Ea 394 (913)
.||||+|++|+|+||.||.|..+||.||+++|.++|++||||||||.||+.||.||++|.+.||||+||||++.|+++||
T Consensus 401 ~IPTnkP~~R~d~~d~vy~t~~~K~~Ai~~ei~~~~~~GrPVLIgT~SVe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA 480 (939)
T PRK12902 401 VIPTNRPRRRQDWPDQVYKTEIAKWRAVANETAEMHKQGRPVLVGTTSVEKSELLSALLQEQGIPHNLLNAKPENVEREA 480 (939)
T ss_pred EcCCCCCeeeecCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEeeCCHHHHHHHHHHHHHcCCchheeeCCCcchHhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999766889999
Q ss_pred HHHHhcCCCccEEEEcCCCCCCcceecCCChhHHHHHHHHHHHHHHHhhhhcccccccCCCCcchhhhhhhcchhHHHHH
Q 002515 395 ETVAQAGRKYAITISTNMAGRGTDIILGGNPKMLAKKIIEDRLLLLLTREALNVEVDDKTSSPKVLSEIKLGSSSLALLA 474 (913)
Q Consensus 395 ~Iia~AG~~G~VTIATnmAGRGTDIkLgg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (913)
+||++||++|+||||||||||||||+|||||+++++..++..+.+......+.... +........++.++++.
T Consensus 481 ~IIa~AG~~GaVTIATNMAGRGTDIkLgGn~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~- 553 (939)
T PRK12902 481 EIVAQAGRKGAVTIATNMAGRGTDIILGGNSDYMARLKLREYLMPRLVKPEDDHKP------PVPLQRGLKGGQGFGPK- 553 (939)
T ss_pred HHHHhcCCCCcEEEeccCCCCCcCEeeCCchhhhhhHHhhhhcccccccccccccc------ccccccccccccccccc-
Confidence 99999999999999999999999999999999999988754443332222111100 00000112244444433
Q ss_pred HHHHHHhhhccccCCchhhhhhhhh---hhhhhhhhhhhhHHHHHHH------------------HhhhccCCCCChhhH
Q 002515 475 KAALLAKYVGKAEGKSWTYQEAKSF---FSESVEMSQSMNLKELQKL------------------IDKQSAMYPLGPTVA 533 (913)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~ 533 (913)
.+++.+.|+.+.+--+ +.+.+........-.+++. .+......+....++
T Consensus 554 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 624 (939)
T PRK12902 554 ---------AKKPKKTWKASSASIFPCELSEETEQLLKEAVDFAVKQYGDRSLPELELEDKIATAAEKAPTDDPVIQKLR 624 (939)
T ss_pred ---------cccccccccccccccccccccchhhhhhhhhhhhhhhhhcccccccccchhhhhhhhhcccccchhhhhHH
Confidence 4577888987765321 1111111111111111100 011112344566789
Q ss_pred HHHHHHhhhhhhcccccchhhhhcCceEEEeccCCCchhhHhhhhcccccCCCCCceeEEEeccchhhhhccCCchHHHH
Q 002515 534 LTYLSVLKDCEVHCSNEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDTSWAVD 613 (913)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerhes~RiD~QLrGRagRQGdpGss~f~lSLeD~l~~~f~~~~~~~~~ 613 (913)
.+|..++.+++..|.+++++|+++|||||||||||||||||||||||||||||||+|||||||||||||+|| ++++.+
T Consensus 625 ~~~~~~~~~~~~~~~~e~~~V~elGGL~VIGTERHESRRIDNQLRGRaGRQGDPGsSrFflSLEDdL~r~Fg--~dri~~ 702 (939)
T PRK12902 625 EAYNRIKKEYEVVTSQEHDEVVEAGGLHVIGTERHESRRVDNQLRGRAGRQGDPGSTRFFLSLEDNLLRIFG--GDRVAG 702 (939)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHcCCCeEEecCccccchHHHHhhcccccCCCCCcceEEEEechHHHHHhC--cHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred HHhhcCCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Q 002515 614 LISRITNDEDMPIEGDAIVRQLLGLQISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSILTGANESCSQQIFQYMQAV 693 (913)
Q Consensus 614 ~~~~~~~~~~~~i~~~~~~~~i~~aQ~~~E~~~~~~Rk~l~~yd~v~~~QR~~IY~~R~~iL~~~~~~~~~~i~~~~~~~ 693 (913)
+|+++++++++||++++++++|++||++||++||++||++++||+|||.||++||++|++||++ +++.+.|.+|++++
T Consensus 703 ~~~~l~~~e~~~I~~~~i~k~ie~AQkkvE~~nf~iRK~ll~YD~Vln~QR~~IY~~R~~iL~~--~~~~~~i~~~~~~~ 780 (939)
T PRK12902 703 LMNAFRVEEDMPIESGMLTRSLEGAQKKVETYYYDIRKQVFEYDEVMNNQRRAIYAERRRVLEG--RDLKEQVIGYGEKT 780 (939)
T ss_pred HHHHcCCCCCCcccchHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcC--CcHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999965 47999999999999
Q ss_pred HHHHHHhcCCCCCCCCcCCHHHHHHHHHHHhccchhhhhccCCccchhhhhhcccccccccccCCCCCCCCCCCcccccc
Q 002515 694 VDEIIFGNVDPLKHPRYWSLDKLLKEFIAIAGKILDDLFAGISGDTLLKSIEELPELNSIDINNFYFPDLPKPPNLFRGI 773 (913)
Q Consensus 694 v~~iv~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 773 (913)
|+++|+.+..+...+++|++++|...+...+ +... .++++ .
T Consensus 781 i~~~v~~~~~~~~~~~~w~~~~l~~~l~~~~--~~~~---~~~~~------------------------------~---- 821 (939)
T PRK12902 781 MDEIVEAYVNPDLPPEEWDLDQLVSKVKEFV--YLLE---DLKPE------------------------------D---- 821 (939)
T ss_pred HHHHHHHhcCCccChhhccHHHHHHHHHHHh--cChh---hcChH------------------------------h----
Confidence 9999999987766678999999987765321 0000 00000 0
Q ss_pred ccccchhhhhhhhcccccccccccccchHHHHHHHHHHHHHHHHHHHHhh-cCCHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 002515 774 RRKSSSLKRWLAICSDDLTKNGRYRATTNLLRKYLGDILIASYLNVVQES-RYDDVYMKEVERAVLVKTLDCFWRDHLIN 852 (913)
Q Consensus 774 ~~~~~~i~~~~~~~~d~~~~~~~~~~~~~~~~~~l~e~~~~~y~~k~~~~-~~~~~~~~~~eR~ilLk~ID~~W~eHLd~ 852 (913)
......+++++++.+.+.+.|..|.... ..+++.++++||.++|++||.+|++||++
T Consensus 822 ----------------------~~~~~~~~l~~~l~~~~~~~y~~K~~~l~~~~~~~~~~~eR~i~L~~iD~~W~eHL~~ 879 (939)
T PRK12902 822 ----------------------LEDLSVEELKAFLHEQLRIAYDLKEAQIDQIRPGLMREAERFFILQQIDTLWREHLQS 879 (939)
T ss_pred ----------------------hccCCHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0111346788899999999997664421 12678999999999999999999999999
Q ss_pred HHHHHHhhhcccccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccCc
Q 002515 853 MNRLSSAVNVRSFGHRNPLEEYKIDGCRFFISMLSATRRLTVESLVQYWSSP 904 (913)
Q Consensus 853 Md~LRegI~LRsYgQKDPl~EYkkEaf~lF~~M~~~I~~~~v~~l~~~~~~~ 904 (913)
|++||+|||||+||||||+.|||+|||++|+.|+.+|++++++++|+++.++
T Consensus 880 md~Lre~I~lR~ygQkdPl~EYk~Ea~~~F~~m~~~ir~~vv~~l~~~~~~~ 931 (939)
T PRK12902 880 MDALRESVGLRGYGQKDPLIEYKNEGYEMFLEMMTNIRRNVVYSLFMFQPQP 931 (939)
T ss_pred HHHHHHhhhhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhheeccC
Confidence 9999999999999999999999999999999999999999999999998443
No 2
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=100.00 E-value=1.2e-214 Score=1877.41 Aligned_cols=792 Identities=46% Similarity=0.726 Sum_probs=700.8
Q ss_pred CCCchhHHHHHHHHhcCCeEEecCCCchHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCC
Q 002515 1 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRG 80 (913)
Q Consensus 1 ~rp~dvQl~g~l~L~~G~IaEm~TGEGKTLva~lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLsv~~i~~~ 80 (913)
|||||||++||++||+|+||||+|||||||+++||+|++||.|++|||||+|+|||+||++||+|||+|||||||++.++
T Consensus 75 ~r~ydvQlig~l~L~~G~IaEm~TGEGKTL~a~l~ayl~aL~G~~VhVvT~NdyLA~RD~e~m~pvy~~LGLsvg~i~~~ 154 (870)
T CHL00122 75 LRHFDVQLIGGLVLNDGKIAEMKTGEGKTLVATLPAYLNALTGKGVHIVTVNDYLAKRDQEWMGQIYRFLGLTVGLIQEG 154 (870)
T ss_pred CCCCchHhhhhHhhcCCccccccCCCCchHHHHHHHHHHHhcCCceEEEeCCHHHHHHHHHHHHHHHHHcCCceeeeCCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHhccCCCeEEECCCcchhhHHHHhhccchhhhhccCCCCceEEEeecchhhhhccCCCceeccCCCCCCccchH
Q 002515 81 MIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYP 160 (913)
Q Consensus 81 ~~~~~r~~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~tPLiiSg~~~~~~~~y~ 160 (913)
+++++|+.+|.||||||||++||||||||||+.++++.|+| +++|||||||||||||+|||||||||+.+.+...|.
T Consensus 155 ~~~~err~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r---~~~faIVDEvDSiLIDeArTPLiISg~~~~~~~~y~ 231 (870)
T CHL00122 155 MSSEERKKNYLKDITYVTNSELGFDYLRDNMALSLSDVVQR---PFNYCIIDEVDSILIDEARTPLIISGQSKTNIDKYI 231 (870)
T ss_pred CChHHHHHhcCCCCEecCCccccccchhhccCcChHHhhcc---ccceeeeecchhheeccCCCceeccCCCccchHHHH
Confidence 99999999999999999999999999999999998899998 999999999999999999999999999998889999
Q ss_pred HHHHHHHHhccCCCeEEeCCCCeeeccHhhHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHhhccCcceEEECCeEEEE
Q 002515 161 VAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVRNGKALII 240 (913)
Q Consensus 161 ~~~~~v~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~l~~~i~~Al~A~~l~~~d~dYiV~dg~V~iV 240 (913)
.++++++.|.++.||.+|++.++++||++|+.++|.++++++||+..++|.++|.+||+|+++|++|+||||+||+|+||
T Consensus 232 ~~~~~v~~L~~~~dy~vdek~k~v~LTe~G~~~~e~~l~i~~ly~~~~~~~~~i~~AL~A~~lf~~d~dYiV~dgeV~iV 311 (870)
T CHL00122 232 VADELAKYLEKNVHYEVDEKNKNVILTEQGILFIEKILKIEDLYSANDPWIPYILNALKAKELFFKNVHYIVRNNEIIIV 311 (870)
T ss_pred HHHHHHHhcCcCCCeEEEcCCCceEecHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHhcCCcEEEECCEEEEE
Confidence 99999999999999999999999999999999999999999999988899999999999999999999999999999999
Q ss_pred eCCCCccccCcccChhhhHHHHhHhCCcccCCceeeeeeeehhHHhhcCcccccCCCcccHHHHHHHHhCCCeEEeCCCC
Q 002515 241 NELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPVIEVPTNL 320 (913)
Q Consensus 241 D~~TGR~~~gr~ws~GLHQaieaKEgv~i~~e~~t~a~IT~q~~F~~Y~kL~GmTGTa~te~~Ef~~iY~l~vv~IPt~~ 320 (913)
|++|||+|+||+||+||||||||||||+|+++++|+|+|||||||++|++|+||||||++++.||+++||++|++||||+
T Consensus 312 De~TGR~m~grrws~GLHQaiEaKEgv~It~e~~tlAsIT~QnfFr~Y~kL~GMTGTa~te~~Ef~~iY~l~vv~IPtnk 391 (870)
T CHL00122 312 DEFTGRIMPGRRWSDGLHQAIEAKENLPIRQETETLASITYQNFFLLYPKLSGMTGTAKTEELEFEKIYNLEVVCIPTHR 391 (870)
T ss_pred ECCCCcCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHHhCchhcccCCCCHHHHHHHHHHhCCCEEECCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccCCCeEEeChhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEeccCCcchhhHHHHHHhc
Q 002515 321 PNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQA 400 (913)
Q Consensus 321 p~~R~d~~d~v~~t~~~k~~aii~ei~~~~~~grPVLI~t~Si~~SE~ls~~L~~~gi~~~vLnA~~k~~~~Ea~Iia~A 400 (913)
|++|+|+||.||.|..+||.||+++|.++|++||||||||.||+.||.||++|.+.||||+||||++.++++||+||++|
T Consensus 392 p~~R~d~~d~v~~t~~~K~~AI~~ei~~~~~~grPVLIgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIA~A 471 (870)
T CHL00122 392 PMLRKDLPDLIYKDELSKWRAIADECLQMHQTGRPILIGTTTIEKSELLSQLLKEYRLPHQLLNAKPENVRRESEIVAQA 471 (870)
T ss_pred CccceeCCCeEEeCHHHHHHHHHHHHHHHHhcCCCEEEeeCCHHHHHHHHHHHHHcCCccceeeCCCccchhHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999654579999999999
Q ss_pred CCCccEEEEcCCCCCCcceecCCChhHHHHHHHHHHHHHHHhhhhcccccccCCCCcchhhhhhhcchhHHHHHHHHHHH
Q 002515 401 GRKYAITISTNMAGRGTDIILGGNPKMLAKKIIEDRLLLLLTREALNVEVDDKTSSPKVLSEIKLGSSSLALLAKAALLA 480 (913)
Q Consensus 401 G~~G~VTIATnmAGRGTDIkLgg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (913)
|++|+||||||||||||||+|||||+++++..++..+.+....+... ..
T Consensus 472 G~~G~VTIATNMAGRGTDI~Lgg~~~~~~~~~~~~~~~~~~~~~~~~--------------~~----------------- 520 (870)
T CHL00122 472 GRKGSITIATNMAGRGTDIILGGNPEFKLKKELYDLLLSYKSNEKIS--------------TI----------------- 520 (870)
T ss_pred CCCCcEEEeccccCCCcCeecCCchhHHHHHHHhhhhcccccccccc--------------cc-----------------
Confidence 99999999999999999999999999999988765544422211000 00
Q ss_pred hhhccccCCchhhhhhhhhhhhhhhhhhhhhHHHHHHHHhh-hccCCCCChhhHHHHHHHhhhhhhcccccchhhhhcCc
Q 002515 481 KYVGKAEGKSWTYQEAKSFFSESVEMSQSMNLKELQKLIDK-QSAMYPLGPTVALTYLSVLKDCEVHCSNEGSEVKRLGG 559 (913)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GG 559 (913)
+... ...-.|.....+..-.... ..+.....++. .....+....++.+|...+..++..|..++++|+++||
T Consensus 521 ~~~~-~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~e~V~~~GG 593 (870)
T CHL00122 521 SQNF-LNILNSLKNDLKFLSLSDF------ENLKILNEASEISIPKNSYQLSLRFLYNELLEKYKKLQEKEKKIVKKLGG 593 (870)
T ss_pred cccc-hhhhhhcccchhhhccccc------ccccccccccccccccchhhhhhhhHHHHHHHHHHHHhhhhHHHHHHcCC
Confidence 0000 0011121111111000000 00000000000 01123334558899999999999999999999999999
Q ss_pred eEEEeccCCCchhhHhhhhcccccCCCCCceeEEEeccchhhhhccCCchHHHHHHhhcCCCCCCCccchHHHHHHHHHH
Q 002515 560 LHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDTSWAVDLISRITNDEDMPIEGDAIVRQLLGLQ 639 (913)
Q Consensus 560 L~VIgTerhes~RiD~QLrGRagRQGdpGss~f~lSLeD~l~~~f~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~aQ 639 (913)
|||||||||||||||||||||||||||||+|+|||||||+||+.|| ++++.++|+++++ +++||++++++++|++||
T Consensus 594 L~VIgTErheSrRIDnQLrGRaGRQGDPG~s~f~lSLED~l~~~f~--~~~~~~~~~~~~~-~~~~i~~~~~~~~i~~aQ 670 (870)
T CHL00122 594 LYVIGTERHESRRIDNQLRGRAGRQGDPGSSRFFLSLEDNLLRIFG--GDKIQNLMQTLNL-DDEPLESKLLSKSLDSAQ 670 (870)
T ss_pred CEEEecCcCchHHHHHHHhccccCCCCCCcceEEEEeccHHHHhhC--hHHHHHHHHHhCC-CCcccccHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999 9999999999999 899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHH
Q 002515 640 ISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSILTGANESCSQQIFQYMQAVVDEIIFGNVDPLKHPRYWSLDKLLKE 719 (913)
Q Consensus 640 ~~~E~~~~~~Rk~l~~yd~v~~~QR~~IY~~R~~iL~~~~~~~~~~i~~~~~~~v~~iv~~~~~~~~~~~~~~~~~l~~~ 719 (913)
++||++||++||++++||+|||.||++||++|++||++ +++.+.+.+|++++++++++ +.++.. .++|++++|...
T Consensus 671 ~~vE~~~~~~Rk~ll~yD~v~~~QR~~iY~~R~~iL~~--~~~~~~i~~~~~~~i~~~v~-~~~~~~-~~~~~~~~l~~~ 746 (870)
T CHL00122 671 KKVEEYYYDQRKQLFEYDQVLNKQRKAIYSERRKILES--QSLRDWILAYGEQVIDDIIT-FLKSRK-NPNNKFINLINK 746 (870)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CcHHHHHHHHHHHHHHHHHH-hcCccC-cccccHHHHHHH
Confidence 99999999999999999999999999999999999965 47999999999999999999 765544 345999999877
Q ss_pred HHHHhccchhhhhccCCccchhhhhhcccccccccccCCCCCCCCCCCccccccccccchhhhhhhhccccccccccccc
Q 002515 720 FIAIAGKILDDLFAGISGDTLLKSIEELPELNSIDINNFYFPDLPKPPNLFRGIRRKSSSLKRWLAICSDDLTKNGRYRA 799 (913)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~d~~~~~~~~~~ 799 (913)
+...++.... ++. . ..+..
T Consensus 747 ~~~~~~~~~~-----~~~------------------------------~--------------------------~~~~~ 765 (870)
T CHL00122 747 FKELLKLPLC-----FNK------------------------------S--------------------------DLNTL 765 (870)
T ss_pred HHHHhCCCCC-----cch------------------------------h--------------------------hhcCC
Confidence 6543211000 000 0 00112
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhh-cCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhcccccCCCcHHHHHHHH
Q 002515 800 TTNLLRKYLGDILIASYLNVVQES-RYDDVYMKEVERAVLVKTLDCFWRDHLINMNRLSSAVNVRSFGHRNPLEEYKIDG 878 (913)
Q Consensus 800 ~~~~~~~~l~e~~~~~y~~k~~~~-~~~~~~~~~~eR~ilLk~ID~~W~eHLd~Md~LRegI~LRsYgQKDPl~EYkkEa 878 (913)
..+++++++.+.++..|..+.... ..+++.++++||.++|++||.+|++||++|++||+||+||+||||||+.|||+||
T Consensus 766 ~~~~~~~~l~~~~~~~y~~k~~~~~~~~~~~~~~~er~~~L~~iD~~W~eHL~~md~Lr~~I~lR~ygQkdPl~EYk~Ea 845 (870)
T CHL00122 766 NSGELKKFLYQQFWISYDLKELYLEQIGTGLMRELERSLLLQQIDKSWKEHLQKMSLLREAIGWRSYGQKDPLIEYKNEA 845 (870)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhccCCHHHHHHHHH
Confidence 346788899999999997664321 2278899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhHhcc
Q 002515 879 CRFFISMLSATRRLTVESLVQYW 901 (913)
Q Consensus 879 f~lF~~M~~~I~~~~v~~l~~~~ 901 (913)
|++|+.|+.+|+++++++||++.
T Consensus 846 ~~~F~~m~~~i~~~~v~~l~~~~ 868 (870)
T CHL00122 846 FNLFINMINHIRHLVIYDLFRSS 868 (870)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCc
Confidence 99999999999999999998764
No 3
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=4.5e-215 Score=1888.10 Aligned_cols=700 Identities=43% Similarity=0.654 Sum_probs=643.9
Q ss_pred CCCchhHHHHHHHHhcCCeEEecCCCchHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcC-
Q 002515 1 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQR- 79 (913)
Q Consensus 1 ~rp~dvQl~g~l~L~~G~IaEm~TGEGKTLva~lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLsv~~i~~- 79 (913)
||||||||+||++||+|+||||+|||||||||+||+|||||+|+||||||+|||||+||++||+|+|+||||||||+..
T Consensus 168 m~~yDVQliGgivLh~G~IAEM~TGEGKTLvAtlp~yLnAL~GkgVHvVTVNDYLA~RDaewmgply~fLGLsvg~i~~~ 247 (1112)
T PRK12901 168 MVHYDVQLIGGVVLHQGKIAEMATGEGKTLVATLPVYLNALTGNGVHVVTVNDYLAKRDSEWMGPLYEFHGLSVDCIDKH 247 (1112)
T ss_pred CcccchHHhhhhhhcCCceeeecCCCCchhHHHHHHHHHHHcCCCcEEEEechhhhhccHHHHHHHHHHhCCceeecCCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCHHHHHhccCCCeEEECCCcchhhHHHHhhccchhhhhccCCCCceEEEeecchhhhhccCCCceeccCCCCCC-ccc
Q 002515 80 GMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKD-VAR 158 (913)
Q Consensus 80 ~~~~~~r~~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~tPLiiSg~~~~~-~~~ 158 (913)
++++++|+.+|.||||||||++||||||||||+.+++++||| +++||||||||||||||||||||||||.+.. ...
T Consensus 248 ~~~~~~rr~aY~~DItYgTn~EfGFDYLRDnm~~~~~~~vqR---~~~fAIVDEvDSILIDEARTPLIISGp~~~~~~~~ 324 (1112)
T PRK12901 248 QPNSEARRKAYNADITYGTNNEFGFDYLRDNMAHSPEDLVQR---KHNYAIVDEVDSVLIDDARTPLIISGPVPKGDDQE 324 (1112)
T ss_pred CCCHHHHHHhCCCcceecCCCccccccchhccccchHhhhCc---CCceeEeechhhhhhccccCcEEEeCCCCCccHHH
Confidence 789999999999999999999999999999999999999999 9999999999999999999999999996655 477
Q ss_pred hHHHHHHHHHh------------------------------------------------cc-------------------
Q 002515 159 YPVAAKVAELL------------------------------------------------VQ------------------- 171 (913)
Q Consensus 159 y~~~~~~v~~l------------------------------------------------~~------------------- 171 (913)
|..++.++..| .+
T Consensus 325 y~~~~~~V~~Lv~~Q~~~~~~~~~~a~~~i~~~~~~eg~~~l~r~~~g~Pknk~li~~L~e~~~~~~~~k~e~~~~~~n~ 404 (1112)
T PRK12901 325 FEELKPRVERLVEAQRKLATQFLAEAKKLIAEGDKKEGGLALLRAYRGLPKNKALIKFLSEEGIKALLQKTENFYMQDNN 404 (1112)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhhhhhccccchhHHHHHhhhhhhhhhhhhhhhhhhhhhh
Confidence 87777755444 22
Q ss_pred --------CCCeEEeCCCCeeeccHhhHHHHHH------Hh----------ccCCCCC------------------CCCc
Q 002515 172 --------GLHYTVELKNNSVELTEEGIALAEM------AL----------ETNDLWD------------------ENDP 209 (913)
Q Consensus 172 --------~~~y~~d~~~k~v~Lt~~G~~~~e~------~~----------~~~~L~~------------------~~~~ 209 (913)
+.||.+|++.++++||++|+.+++. +| +++++|+ .+..
T Consensus 405 ~~~~~~~~~~dy~iDek~~~v~LTe~G~~~~e~~~~~~~~fv~pdi~~~~~~I~~ly~l~~~ek~~~k~~~~~~~~~~~~ 484 (1112)
T PRK12901 405 REMPEVDEELYFVIDEKNNSVELTDKGIDYITGNDEDPDFFVLPDIGTELAEIENEGGLDEEEEAEKKEELFQDYSVKSE 484 (1112)
T ss_pred hcccccCCCCceEEecCCCceeecHHHHHHHhcccCchhhhhccchhhhhhcchhhcccchhhhhhhhhhhhhhhhhHhH
Confidence 3599999999999999999999988 66 7778876 2235
Q ss_pred HHHHHHHHHHHHHhhccCcceEEECCeEEEEeCCCCccccCcccChhhhHHHHhHhCCcccCCceeeeeeeehhHHhhcC
Q 002515 210 WARFVMNALKAKEFYRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYP 289 (913)
Q Consensus 210 l~~~i~~Al~A~~l~~~d~dYiV~dg~V~iVD~~TGR~~~gr~ws~GLHQaieaKEgv~i~~e~~t~a~IT~q~~F~~Y~ 289 (913)
+.|+|++||+|+++|++|+||||+||+|+|||++|||+|+||+||+||||||||||||+|+++++|+|+||||||||+|+
T Consensus 485 ~~h~i~qaLkA~~lf~kDvdYiV~dgkV~IVDe~TGRim~gRr~sdGLHQAIEAKE~V~I~~e~qT~AtIT~QnyFR~Y~ 564 (1112)
T PRK12901 485 RVHTLNQLLKAYTLFEKDDEYVVMDGKVKIVDEQTGRIMEGRRYSDGLHQAIEAKENVKIEAATQTFATITLQNYFRMYH 564 (1112)
T ss_pred HHHHHHHHHHHHHHHhcCCcEEEECCEEEEEeCCCCccCCCCccchHHHHHHHHHcCCCCCCCceeeeeeeHHHHHhhCc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCcccHHHHHHHHhCCCeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHH
Q 002515 290 KLSGMTGTAKTEEKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYL 369 (913)
Q Consensus 290 kL~GmTGTa~te~~Ef~~iY~l~vv~IPt~~p~~R~d~~d~v~~t~~~k~~aii~ei~~~~~~grPVLI~t~Si~~SE~l 369 (913)
||+||||||+|++.||+++||++|++||||+|++|+|+||.||.|..+||+||+++|.++|++||||||||.||+.||.|
T Consensus 565 kLsGMTGTA~tea~Ef~~IY~L~Vv~IPTnrP~~R~D~~D~vy~t~~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~l 644 (1112)
T PRK12901 565 KLAGMTGTAETEAGEFWDIYKLDVVVIPTNRPIARKDKEDLVYKTKREKYNAVIEEITELSEAGRPVLVGTTSVEISELL 644 (1112)
T ss_pred hhcccCCCCHHHHHHHHHHhCCCEEECCCCCCcceecCCCeEecCHHHHHHHHHHHHHHHHHCCCCEEEEeCcHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHCCCCeEEeccCCcchhhHHHHHHhcCCCccEEEEcCCCCCCcceecCCChhHHHHHHHHHHHHHHHhhhhcccc
Q 002515 370 SDLLKQQGIPHNVLNARPKYAAREAETVAQAGRKYAITISTNMAGRGTDIILGGNPKMLAKKIIEDRLLLLLTREALNVE 449 (913)
Q Consensus 370 s~~L~~~gi~~~vLnA~~k~~~~Ea~Iia~AG~~G~VTIATnmAGRGTDIkLgg~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (913)
|++|+.+||||+|||| ++|++||+|||+||++|+||||||||||||||+||
T Consensus 645 S~~L~~~gI~H~VLNA--K~h~~EAeIVA~AG~~GaVTIATNMAGRGTDIkLg--------------------------- 695 (1112)
T PRK12901 645 SRMLKMRKIPHNVLNA--KLHQKEAEIVAEAGQPGTVTIATNMAGRGTDIKLS--------------------------- 695 (1112)
T ss_pred HHHHHHcCCcHHHhhc--cchhhHHHHHHhcCCCCcEEEeccCcCCCcCcccc---------------------------
Confidence 9999999999999999 68999999999999999999999999999999998
Q ss_pred cccCCCCcchhhhhhhcchhHHHHHHHHHHHhhhccccCCchhhhhhhhhhhhhhhhhhhhhHHHHHHHHhhhccCCCCC
Q 002515 450 VDDKTSSPKVLSEIKLGSSSLALLAKAALLAKYVGKAEGKSWTYQEAKSFFSESVEMSQSMNLKELQKLIDKQSAMYPLG 529 (913)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 529 (913)
T Consensus 696 -------------------------------------------------------------------------------- 695 (1112)
T PRK12901 696 -------------------------------------------------------------------------------- 695 (1112)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhHHHHHHHhhhhhhcccccchhhhhcCceEEEeccCCCchhhHhhhhcccccCCCCCceeEEEeccchhhhhccCCch
Q 002515 530 PTVALTYLSVLKDCEVHCSNEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDTS 609 (913)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerhes~RiD~QLrGRagRQGdpGss~f~lSLeD~l~~~f~~~~~ 609 (913)
++|+++|||||||||||||||||||||||||||||||||+|||||||+|||.|| ++
T Consensus 696 ----------------------~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSLEDdLmr~Fg--s~ 751 (1112)
T PRK12901 696 ----------------------PEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFYVSLEDNLMRLFG--SE 751 (1112)
T ss_pred ----------------------hhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEEEEcccHHHHhhC--cH
Confidence 479999999999999999999999999999999999999999999999999999 99
Q ss_pred HHHHHHhhcCCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHH
Q 002515 610 WAVDLISRITNDEDMPIEGDAIVRQLLGLQISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSILTGANESCSQQIFQY 689 (913)
Q Consensus 610 ~~~~~~~~~~~~~~~~i~~~~~~~~i~~aQ~~~E~~~~~~Rk~l~~yd~v~~~QR~~IY~~R~~iL~~~~~~~~~~i~~~ 689 (913)
++.++|+++++++|+||+|++++++|++||++||++||++||+|++||+|||.||++||++|+++|.+ +++...|.+|
T Consensus 752 ri~~~m~~~g~~ege~I~~~~i~ksIe~AQkkvE~~nf~iRK~lleYDdVmn~QR~vIY~~R~~iL~~--~~l~~~i~~~ 829 (1112)
T PRK12901 752 RIAKVMDRMGLKEGEVIQHSMISKSIERAQKKVEENNFGIRKRLLEYDDVMNSQREVIYKRRRHALMG--ERLGMDIANM 829 (1112)
T ss_pred HHHHHHHHcCCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CcHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999965 4799999999
Q ss_pred HHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHhccchhhhhccCCccchhhhhhcccccccccccCCCCCCCCCCCcc
Q 002515 690 MQAVVDEIIFGNVDPLKHPRYWSLDKLLKEFIAIAGKILDDLFAGISGDTLLKSIEELPELNSIDINNFYFPDLPKPPNL 769 (913)
Q Consensus 690 ~~~~v~~iv~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 769 (913)
++++++++|+.+.. .|++++|..++...++... .++++ .
T Consensus 830 i~~~i~~~v~~~~~------~~~~~~l~~~~~~~~~~~~-----~~~~~------------------------------~ 868 (1112)
T PRK12901 830 IYDVCEAIVENNKV------ANDYKGFKFELIRTLAMES-----PITEE------------------------------E 868 (1112)
T ss_pred HHHHHHHHHHHhcC------hhhHHHHHHHHHHHhCccc-----CCCHH------------------------------H
Confidence 99999999987753 4688888776653321100 00000 0
Q ss_pred ccccccccchhhhhhhhcccccccccccccchHHHHHHHHHHHHHHHHHHHHhh--------------------------
Q 002515 770 FRGIRRKSSSLKRWLAICSDDLTKNGRYRATTNLLRKYLGDILIASYLNVVQES-------------------------- 823 (913)
Q Consensus 770 ~~~~~~~~~~i~~~~~~~~d~~~~~~~~~~~~~~~~~~l~e~~~~~y~~k~~~~-------------------------- 823 (913)
+ .....+++.+++.+.+.+.|..|.+..
T Consensus 869 ~--------------------------~~~~~~~l~~~l~~~~~~~y~~K~~~~~~~~~~v~~~~~~~~~~~~~~i~~~~ 922 (1112)
T PRK12901 869 F--------------------------NKLKKDELTDKLYDAALENYQRKMERIAEIAFPVIKQVYEEQGNMYERIVVPF 922 (1112)
T ss_pred h--------------------------hcCCHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhhhhcccccccccccccc
Confidence 0 011235567777777888886553322
Q ss_pred ------------------cCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhcccccCCCcHHHHHHHHHHHHHHH
Q 002515 824 ------------------RYDDVYMKEVERAVLVKTLDCFWRDHLINMNRLSSAVNVRSFGHRNPLEEYKIDGCRFFISM 885 (913)
Q Consensus 824 ------------------~~~~~~~~~~eR~ilLk~ID~~W~eHLd~Md~LRegI~LRsYgQKDPl~EYkkEaf~lF~~M 885 (913)
..+++.+++|||.++|++||.+|++||++||+||+||+||+||||||+.|||+|||+||+.|
T Consensus 923 tdg~~~~~~~~~l~~~~~~~g~~~~~~~er~i~L~~ID~~W~eHL~~md~Lr~~I~lr~y~QkDPl~eYk~Eaf~lF~~m 1002 (1112)
T PRK12901 923 TDGKRTLNVVTNLKEAYETEGKEIVKDFEKNITLHIIDEAWKEHLREMDELKQSVQNASYEQKDPLLIYKFESFELFKNM 1002 (1112)
T ss_pred cccccceeeeccHHHhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhccCChHHHHHHHHHHHHHHH
Confidence 11567899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHhcccCcc
Q 002515 886 LSATRRLTVESLVQYWSSPM 905 (913)
Q Consensus 886 ~~~I~~~~v~~l~~~~~~~~ 905 (913)
+.+|+.+++++||+.+....
T Consensus 1003 ~~~i~~~iv~~l~~~~i~~~ 1022 (1112)
T PRK12901 1003 VDKVNREVISFLFKGEIPVQ 1022 (1112)
T ss_pred HHHHHHHHHHHHHhheeccC
Confidence 99999999999999876433
No 4
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=2.2e-214 Score=1863.94 Aligned_cols=701 Identities=43% Similarity=0.670 Sum_probs=658.5
Q ss_pred CCCchhHHHHHHHHhcCCeEEecCCCchHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCC
Q 002515 1 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRG 80 (913)
Q Consensus 1 ~rp~dvQl~g~l~L~~G~IaEm~TGEGKTLva~lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLsv~~i~~~ 80 (913)
|||||||++||++||+|+||||+||||||||++||+|||||+|++|||||+|||||+||++||+|||+|||||||+|.++
T Consensus 77 ~r~ydVQliGglvLh~G~IAEMkTGEGKTLvAtLpayLnAL~GkgVhVVTvNdYLA~RDae~mg~vy~fLGLsvG~i~~~ 156 (925)
T PRK12903 77 KRPYDVQIIGGIILDLGSVAEMKTGEGKTITSIAPVYLNALTGKGVIVSTVNEYLAERDAEEMGKVFNFLGLSVGINKAN 156 (925)
T ss_pred CCcCchHHHHHHHHhcCCeeeecCCCCccHHHHHHHHHHHhcCCceEEEecchhhhhhhHHHHHHHHHHhCCceeeeCCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHhccCCCeEEECCCcchhhHHHHhhccchhhhhccCCCCceEEEeecchhhhhccCCCceeccCCCCCCccchH
Q 002515 81 MIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYP 160 (913)
Q Consensus 81 ~~~~~r~~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~tPLiiSg~~~~~~~~y~ 160 (913)
+++++|+.+|.||||||||++||||||||||+.+.++.||| +++|||||||||||||+||||||||||.+..+.+|.
T Consensus 157 ~~~~~rr~aY~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR---~~~faIVDEVDSILIDEArTPLIISg~~~~~~~~Y~ 233 (925)
T PRK12903 157 MDPNLKREAYACDITYSVHSELGFDYLRDNMVSSKEEKVQR---GLNFCLIDEVDSILIDEAKTPLIISGGQSNDSNLYL 233 (925)
T ss_pred CChHHHHHhccCCCeeecCcccchhhhhhcccccHHHhcCc---ccceeeeccchheeecccCCcccccCCCccchHHHH
Confidence 99999999999999999999999999999999999999999 999999999999999999999999999998889999
Q ss_pred HHHHHHHHhccCCCeEEeCCCCeeeccHhhHHHHHHHhccCCCCCCCC-cHHHHHHHHHHHHHhhccCcceEEECCeEEE
Q 002515 161 VAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDEND-PWARFVMNALKAKEFYRRDVQYIVRNGKALI 239 (913)
Q Consensus 161 ~~~~~v~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~-~l~~~i~~Al~A~~l~~~d~dYiV~dg~V~i 239 (913)
.++.++..|.++ ||.+|++.++++||++|+.++|.+|++.+||+..+ .+.+||++||+|+++|++|+||||+||+|+|
T Consensus 234 ~~~~~v~~L~~~-dy~iDek~k~v~LTe~G~~~~E~~l~i~nLy~~~n~~l~h~i~~AL~A~~lf~rd~dYiV~dg~V~I 312 (925)
T PRK12903 234 AADQFVRTLKED-DYKIDEETKAISLTEKGIKKANKFFKLKNLYDIENSELVHRIQNALRAHKVMKEDVEYIVRDGKIEL 312 (925)
T ss_pred HHHHHHHhcccc-ceEEecccceEEECHhHHHHHHHHcCCCcccChhhHHHHHHHHHHHHHHHHHhcCCceEEECCEEEE
Confidence 999999999875 99999999999999999999999999999998765 7899999999999999999999999999999
Q ss_pred EeCCCCccccCcccChhhhHHHHhHhCCcccCCceeeeeeeehhHHhhcCcccccCCCcccHHHHHHHHhCCCeEEeCCC
Q 002515 240 INELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPVIEVPTN 319 (913)
Q Consensus 240 VD~~TGR~~~gr~ws~GLHQaieaKEgv~i~~e~~t~a~IT~q~~F~~Y~kL~GmTGTa~te~~Ef~~iY~l~vv~IPt~ 319 (913)
||++|||+|+||+||+||||||||||||+|+++++|+|+||||||||+|++|+||||||++++.||+++||++|++||||
T Consensus 313 VDefTGR~m~gRrwsdGLHQaIEAKEgv~I~~e~~TlAsIT~QnfFr~Y~kLsGMTGTA~te~~Ef~~iY~l~Vv~IPTn 392 (925)
T PRK12903 313 VDQFTGRIMEGRSYSEGLQQAIQAKEMVEIEPETKTLATITYQNFFRLFKKLSGMTGTAKTEEQEFIDIYNMRVNVVPTN 392 (925)
T ss_pred EECCCCCCCCCCccchHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhhccCCCCHHHHHHHHHHhCCCEEECCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccCCCeEEeChhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEeccCCcchhhHHHHHHh
Q 002515 320 LPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQ 399 (913)
Q Consensus 320 ~p~~R~d~~d~v~~t~~~k~~aii~ei~~~~~~grPVLI~t~Si~~SE~ls~~L~~~gi~~~vLnA~~k~~~~Ea~Iia~ 399 (913)
+|++|+|+||.||.|..+||.||+++|.++|++||||||||.||+.||.||++|++.||||+|||| ++|++||+||++
T Consensus 393 kP~~R~D~~d~iy~t~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vLNA--k~~e~EA~IIa~ 470 (925)
T PRK12903 393 KPVIRKDEPDSIFGTKHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANIPHTVLNA--KQNAREAEIIAK 470 (925)
T ss_pred CCeeeeeCCCcEEEcHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCceeecc--cchhhHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999999999 689999999999
Q ss_pred cCCCccEEEEcCCCCCCcceecCCChhHHHHHHHHHHHHHHHhhhhcccccccCCCCcchhhhhhhcchhHHHHHHHHHH
Q 002515 400 AGRKYAITISTNMAGRGTDIILGGNPKMLAKKIIEDRLLLLLTREALNVEVDDKTSSPKVLSEIKLGSSSLALLAKAALL 479 (913)
Q Consensus 400 AG~~G~VTIATnmAGRGTDIkLgg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (913)
||++|+||||||||||||||+|||
T Consensus 471 AG~~GaVTIATNMAGRGTDI~Lg~-------------------------------------------------------- 494 (925)
T PRK12903 471 AGQKGAITIATNMAGRGTDIKLSK-------------------------------------------------------- 494 (925)
T ss_pred CCCCCeEEEecccccCCcCccCch--------------------------------------------------------
Confidence 999999999999999999999983
Q ss_pred HhhhccccCCchhhhhhhhhhhhhhhhhhhhhHHHHHHHHhhhccCCCCChhhHHHHHHHhhhhhhcccccchhhhhcCc
Q 002515 480 AKYVGKAEGKSWTYQEAKSFFSESVEMSQSMNLKELQKLIDKQSAMYPLGPTVALTYLSVLKDCEVHCSNEGSEVKRLGG 559 (913)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GG 559 (913)
+|+++||
T Consensus 495 -------------------------------------------------------------------------~V~~~GG 501 (925)
T PRK12903 495 -------------------------------------------------------------------------EVLELGG 501 (925)
T ss_pred -------------------------------------------------------------------------hHHHcCC
Confidence 7889999
Q ss_pred eEEEeccCCCchhhHhhhhcccccCCCCCceeEEEeccchhhhhccCCc-hHHHHHHhhcCCCCCCCccchHHHHHHHHH
Q 002515 560 LHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDT-SWAVDLISRITNDEDMPIEGDAIVRQLLGL 638 (913)
Q Consensus 560 L~VIgTerhes~RiD~QLrGRagRQGdpGss~f~lSLeD~l~~~f~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~i~~a 638 (913)
|||||||||||||||||||||||||||||||+|||||||+|||+|| + +++.++|.+++++ ||++++++++|++|
T Consensus 502 LhVIgTerheSrRIDnQLrGRaGRQGDpGss~f~lSLeD~L~r~f~--~~~ri~~~~~~l~~~---~i~~~~i~~~ie~A 576 (925)
T PRK12903 502 LYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFFISLDDQLFRRFS--NFDKIKEAFKKLGDD---EIKSKFFSKALLNA 576 (925)
T ss_pred cEEEecccCchHHHHHHHhcccccCCCCCcceEEEecchHHHHHhC--CHHHHHHHHHhcCCC---cccchHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999 9 9999999999863 89999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHH
Q 002515 639 QISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSILTGANESCSQQIFQYMQAVVDEIIFGNVDPLKHPRYWSLDKLLK 718 (913)
Q Consensus 639 Q~~~E~~~~~~Rk~l~~yd~v~~~QR~~IY~~R~~iL~~~~~~~~~~i~~~~~~~v~~iv~~~~~~~~~~~~~~~~~l~~ 718 (913)
|++||++||++||++++||+|||.||++||++|++||.+ +++.+.|.+|++++++.+++.+.++. .+++|++++|..
T Consensus 577 QkkvE~~nfdiRK~ll~yDdV~n~QR~~IY~~R~~iL~~--~~~~~~i~~~~~~~i~~~~~~~~~~~-~~~~w~~~~l~~ 653 (925)
T PRK12903 577 QKKIEGFNFDTRKNVLDYDDVIRQQRDLIYAQRDLILIA--DDLSHVIEKMISRAVEQILKNSFIIL-KNNTINYKELVE 653 (925)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CcHHHHHHHHHHHHHHHHHHHhcCcc-chhhcCHHHHHH
Confidence 999999999999999999999999999999999999965 47999999999999999999988665 578999999987
Q ss_pred HHHHHhccchhhhhccCCccchhhhhhcccccccccccCCCCCCCCCCCccccccccccchhhhhhhhcccccccccccc
Q 002515 719 EFIAIAGKILDDLFAGISGDTLLKSIEELPELNSIDINNFYFPDLPKPPNLFRGIRRKSSSLKRWLAICSDDLTKNGRYR 798 (913)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~d~~~~~~~~~ 798 (913)
.+...++.+... .++ +..| ..
T Consensus 654 ~l~~~~~~i~~~---~~~-------------------------------------------~~~~-------------~~ 674 (925)
T PRK12903 654 FLNDNLLRITHF---KFS-------------------------------------------EKDF-------------EN 674 (925)
T ss_pred HHHHHhhhcccc---CCC-------------------------------------------HHHH-------------cc
Confidence 765432210000 000 0001 01
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhh--cCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhcccccCCCcHHHHHH
Q 002515 799 ATTNLLRKYLGDILIASYLNVVQES--RYDDVYMKEVERAVLVKTLDCFWRDHLINMNRLSSAVNVRSFGHRNPLEEYKI 876 (913)
Q Consensus 799 ~~~~~~~~~l~e~~~~~y~~k~~~~--~~~~~~~~~~eR~ilLk~ID~~W~eHLd~Md~LRegI~LRsYgQKDPl~EYkk 876 (913)
...+++.+++.+.+.+.|..+.+.. ..+++.++++||.++|++||.+|++||++||+||+|||||+||||||++|||+
T Consensus 675 ~~~~~l~~~l~~~~~~~y~~k~~~~~~~~g~~~~~~~er~i~L~~iD~~W~eHL~~md~Lr~~I~lR~y~QkdPl~eYk~ 754 (925)
T PRK12903 675 YHKEELAQYLIEALNEIYFKKRQVILDKIALNTFFESERYIILSALDKYWQNHIDTMDKLRSGVNLVQYSQKNPYQVYTE 754 (925)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCChHHHHHH
Confidence 1346788899999999997664321 12677899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhcccC
Q 002515 877 DGCRFFISMLSATRRLTVESLVQYWSS 903 (913)
Q Consensus 877 Eaf~lF~~M~~~I~~~~v~~l~~~~~~ 903 (913)
|||+||+.|+.+|+.+++++||+++..
T Consensus 755 Ea~~~F~~m~~~i~~~~v~~l~~~~~~ 781 (925)
T PRK12903 755 EGTKKFNILLQEIAYDVIVSLFNNPNA 781 (925)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 999999999999999999999998753
No 5
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=1.6e-211 Score=1857.37 Aligned_cols=736 Identities=43% Similarity=0.695 Sum_probs=678.6
Q ss_pred CCCchhHHHHHHHHhcCCeEEecCCCchHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCC
Q 002515 1 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRG 80 (913)
Q Consensus 1 ~rp~dvQl~g~l~L~~G~IaEm~TGEGKTLva~lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLsv~~i~~~ 80 (913)
|||||||++||++||+|+||||+|||||||||+||+|++||.|++|||||||+|||+||++||+|+|++|||+|++++++
T Consensus 81 m~~ydVQliGg~~Lh~G~iaEM~TGEGKTLvA~l~a~l~al~G~~VhvvT~ndyLA~RD~e~m~~l~~~lGl~v~~i~~~ 160 (913)
T PRK13103 81 MRHFDVQLIGGMTLHEGKIAEMRTGEGKTLVGTLAVYLNALSGKGVHVVTVNDYLARRDANWMRPLYEFLGLSVGIVTPF 160 (913)
T ss_pred CCcchhHHHhhhHhccCccccccCCCCChHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHHHhcccCCEEEEECCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHhccCCCeEEECCCcchhhHHHHhhccchhhhhccCCCCceEEEeecchhhhhccCCCceeccCCCCCCccchH
Q 002515 81 MIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYP 160 (913)
Q Consensus 81 ~~~~~r~~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~tPLiiSg~~~~~~~~y~ 160 (913)
+++++|+.+|.||||||||++||||||||+|+.+.++.||| +++||||||||||||||||||||||||.+.....|.
T Consensus 161 ~~~~err~~Y~~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr---~l~~aIVDEvDsiLIDEArtPLIISg~~~~~~~~y~ 237 (913)
T PRK13103 161 QPPEEKRAAYAADITYGTNNEFGFDYLRDNMAFSLDDKFQR---ELNFAVIDEVDSILIDEARTPLIISGQAEDSSKLYI 237 (913)
T ss_pred CCHHHHHHHhcCCEEEEcccccccchhhccceechhhhccc---ccceeEechhhheeccccCCceeecCCCccchHHHH
Confidence 99999999999999999999999999999999988899998 999999999999999999999999999998888999
Q ss_pred HHHHHHHHhccC-----------CCeEEeCCCCeeeccHhhHHHHHHHh---cc----CCCCCCCC-cHHHHHHHHHHHH
Q 002515 161 VAAKVAELLVQG-----------LHYTVELKNNSVELTEEGIALAEMAL---ET----NDLWDEND-PWARFVMNALKAK 221 (913)
Q Consensus 161 ~~~~~v~~l~~~-----------~~y~~d~~~k~v~Lt~~G~~~~e~~~---~~----~~L~~~~~-~l~~~i~~Al~A~ 221 (913)
.++.++..|.+. .||.+|++.++++||++|+.++|.++ ++ .++|+..+ .+.+||.+||+|+
T Consensus 238 ~~~~~v~~L~~~~~~~~~~~~~~~~y~idek~~~v~LTe~G~~~~e~~~~~~~i~~~~~~ly~~~~~~~~~~i~~AL~A~ 317 (913)
T PRK13103 238 EINRLIPRLKQHIEEVEGQVTQEGHFTIDEKTRQVELNEAGHQFIEEMLTQAGLLAEGESLYSAHNLGLLTHVYAGLRAH 317 (913)
T ss_pred HHHHHHHHHHhhhhccccccCCCCCeEEEcCCCeeeechHHHHHHHHHhhhCCCcccchhccChhhhHHHHHHHHHHHHH
Confidence 999999999542 59999999999999999999999987 55 67898765 7899999999999
Q ss_pred HhhccCcceEEECCeEEEEeCCCCccccCcccChhhhHHHHhHhCCcccCCceeeeeeeehhHHhhcCcccccCCCcccH
Q 002515 222 EFYRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTE 301 (913)
Q Consensus 222 ~l~~~d~dYiV~dg~V~iVD~~TGR~~~gr~ws~GLHQaieaKEgv~i~~e~~t~a~IT~q~~F~~Y~kL~GmTGTa~te 301 (913)
++|++|+||||+||+|+|||++|||+|+||+||+||||||||||||+|+++++|+|+|||||||++|+||+||||||+++
T Consensus 318 ~lf~~d~dYiV~dg~V~IVDe~TGR~m~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~kLsGMTGTa~te 397 (913)
T PRK13103 318 KLFHRNVEYIVQDGQVLLIDEHTGRTMPGRRLSEGLHQAIEAKENLNIQAESQTLASTTFQNYFRLYNKLSGMTGTADTE 397 (913)
T ss_pred HHHhcCCcEEEECCEEEEEECCCCCcCCCCccchHHHHHHHHHcCCCcCCCceeEEeehHHHHHHhcchhccCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHCCCCeE
Q 002515 302 EKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHN 381 (913)
Q Consensus 302 ~~Ef~~iY~l~vv~IPt~~p~~R~d~~d~v~~t~~~k~~aii~ei~~~~~~grPVLI~t~Si~~SE~ls~~L~~~gi~~~ 381 (913)
+.||+++||++|++||||+|++|+|+||.||.|..+||+||+++|.++|++||||||||.||+.||.||++|++.||||+
T Consensus 398 ~~Ef~~iY~l~Vv~IPTnkP~~R~D~~d~vy~t~~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~SE~ls~~L~~~gi~h~ 477 (913)
T PRK13103 398 AFEFRQIYGLDVVVIPPNKPLARKDFNDLVYLTAEEKYAAIITDIKECMALGRPVLVGTATIETSEHMSNLLKKEGIEHK 477 (913)
T ss_pred HHHHHHHhCCCEEECCCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHHHHcCCcHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccCCcchhhHHHHHHhcCCCccEEEEcCCCCCCcceecCCChhHHHHHHHHHHHHHHHhhhhcccccccCCCCcchhh
Q 002515 382 VLNARPKYAAREAETVAQAGRKYAITISTNMAGRGTDIILGGNPKMLAKKIIEDRLLLLLTREALNVEVDDKTSSPKVLS 461 (913)
Q Consensus 382 vLnA~~k~~~~Ea~Iia~AG~~G~VTIATnmAGRGTDIkLgg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (913)
|||| ++|++||+||++||++|+||||||||||||||+|||||++..+ . +. +
T Consensus 478 VLNA--k~~~~EA~IIa~AG~~GaVTIATNMAGRGTDIkLg~n~~~~~~----~-----~~-~----------------- 528 (913)
T PRK13103 478 VLNA--KYHEKEAEIIAQAGRPGALTIATNMAGRGTDILLGGNWEVEVA----A-----LE-N----------------- 528 (913)
T ss_pred Hhcc--ccchhHHHHHHcCCCCCcEEEeccCCCCCCCEecCCchHHHHH----h-----hh-h-----------------
Confidence 9999 6899999999999999999999999999999999999986321 0 00 0
Q ss_pred hhhhcchhHHHHHHHHHHHhhhccccCCchhhhhhhhhhhhhhhhhhhhhHHHHHHHHhhhccCCCCChhhHHHHHHHhh
Q 002515 462 EIKLGSSSLALLAKAALLAKYVGKAEGKSWTYQEAKSFFSESVEMSQSMNLKELQKLIDKQSAMYPLGPTVALTYLSVLK 541 (913)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (913)
.-...++
T Consensus 529 -------------------------------------------------------------------------~~~~~~~ 535 (913)
T PRK13103 529 -------------------------------------------------------------------------PTPEQIA 535 (913)
T ss_pred -------------------------------------------------------------------------hhHHHHH
Confidence 0012345
Q ss_pred hhhhcccccchhhhhcCceEEEeccCCCchhhHhhhhcccccCCCCCceeEEEeccchhhhhccCCchHHHHHHhhcCCC
Q 002515 542 DCEVHCSNEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDTSWAVDLISRITND 621 (913)
Q Consensus 542 ~~~~~~~~~~~~V~~~GGL~VIgTerhes~RiD~QLrGRagRQGdpGss~f~lSLeD~l~~~f~~~~~~~~~~~~~~~~~ 621 (913)
+++..|.+++++|+++|||||||||||||||||||||||||||||||||+|||||||+||+.|| ++++.++|++++++
T Consensus 536 ~~~~~~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSlED~Lmr~fg--~~~~~~~~~~~~~~ 613 (913)
T PRK13103 536 QIKADWQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDSLMRIFA--SDRVKNFMKALGMQ 613 (913)
T ss_pred HHHHHHHhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcHHHHhhC--cHHHHHHHHHcCCC
Confidence 6778899999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred CCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHhc
Q 002515 622 EDMPIEGDAIVRQLLGLQISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSILTGANESCSQQIFQYMQAVVDEIIFGN 701 (913)
Q Consensus 622 ~~~~i~~~~~~~~i~~aQ~~~E~~~~~~Rk~l~~yd~v~~~QR~~IY~~R~~iL~~~~~~~~~~i~~~~~~~v~~iv~~~ 701 (913)
+++||++++++++|++||++||++||++||++++||+|||.||++||++|++||.+ +++.+.|.+|++++++++++.+
T Consensus 614 e~~~I~~~~i~~~i~~aQk~vE~~~~~~Rk~ll~yD~Vln~QR~~IY~~R~~iL~~--~~~~~~i~~~~~~~i~~~~~~~ 691 (913)
T PRK13103 614 SGEAIEHRMVTNAIEKAQRKVEGRNFDIRKQLLEFDDVANEQRKVIYHMRNSLLAA--ENIGETIAEFREEVLNATISQH 691 (913)
T ss_pred CCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--CcHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999965 4799999999999999999988
Q ss_pred CCCCCCCCcCCHHHHHHHHHHHhccchhhhhccCCccchhhhhhcccccccccccCCCCCCCCCCCccccccccccchhh
Q 002515 702 VDPLKHPRYWSLDKLLKEFIAIAGKILDDLFAGISGDTLLKSIEELPELNSIDINNFYFPDLPKPPNLFRGIRRKSSSLK 781 (913)
Q Consensus 702 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 781 (913)
.++...+++|++++|...+...++..+. + .
T Consensus 692 ~~~~~~~e~~~~~~l~~~~~~~~~~~~~-----~---------------------------------------------~ 721 (913)
T PRK13103 692 IPPQSLPEQWDVAGLEAALASDFAVKLP-----I---------------------------------------------Q 721 (913)
T ss_pred cCCccChhhcCHHHHHHHHHHHcCCCCC-----H---------------------------------------------H
Confidence 7666667889999988776533211000 0 0
Q ss_pred hhhhhcccccccccccccchHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhh
Q 002515 782 RWLAICSDDLTKNGRYRATTNLLRKYLGDILIASYLNVVQESRYDDVYMKEVERAVLVKTLDCFWRDHLINMNRLSSAVN 861 (913)
Q Consensus 782 ~~~~~~~d~~~~~~~~~~~~~~~~~~l~e~~~~~y~~k~~~~~~~~~~~~~~eR~ilLk~ID~~W~eHLd~Md~LRegI~ 861 (913)
.|. ++ ......+++.+++.+.+.+.|..|. ..++++.+++|||.++|++||.+|++||++||+||+|||
T Consensus 722 ~~~----~~-----~~~~~~~~l~~~l~~~~~~~y~~k~--~~~~~~~~~~~er~i~L~~iD~~W~eHL~~md~Lr~~I~ 790 (913)
T PRK13103 722 QWL----DE-----DDHLYEETLREKILEELLAAYNEKE--DQAGAEALRTFEKQILLRVLDDLWKDHLSTMDHLRHGIH 790 (913)
T ss_pred HhH----hh-----hccCCHHHHHHHHHHHHHHHHHHHH--HHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 000 00 0011346688899999999997663 456888999999999999999999999999999999999
Q ss_pred cccccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccCccc
Q 002515 862 VRSFGHRNPLEEYKIDGCRFFISMLSATRRLTVESLVQYWSSPME 906 (913)
Q Consensus 862 LRsYgQKDPl~EYkkEaf~lF~~M~~~I~~~~v~~l~~~~~~~~~ 906 (913)
||+||||||+.|||+|||++|+.|+.+|+.+++++||+++.+..+
T Consensus 791 lr~y~QkdPl~eYk~Ea~~~F~~m~~~i~~~~v~~l~~~~~~~~~ 835 (913)
T PRK13103 791 LRGYAQKNPKQEYKRESFTLFQELLDSIKRDTIRVLSHVQVRRED 835 (913)
T ss_pred hhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 999999999999999999999999999999999999998764333
No 6
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=7.1e-207 Score=1816.98 Aligned_cols=732 Identities=41% Similarity=0.661 Sum_probs=675.4
Q ss_pred CCCchhHHHHHHHHhcCCeEEecCCCchHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCC
Q 002515 1 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRG 80 (913)
Q Consensus 1 ~rp~dvQl~g~l~L~~G~IaEm~TGEGKTLva~lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLsv~~i~~~ 80 (913)
|||||||||||++||+|+||||+|||||||+|+||+|++||+|++|||||||+|||+||++||+|||++|||||+++.++
T Consensus 81 m~~ydVQliGgl~L~~G~IaEm~TGEGKTL~a~lp~~l~al~g~~VhIvT~ndyLA~RD~e~m~~l~~~lGlsv~~i~~~ 160 (908)
T PRK13107 81 MRHFDVQLLGGMVLDSNRIAEMRTGEGKTLTATLPAYLNALTGKGVHVITVNDYLARRDAENNRPLFEFLGLTVGINVAG 160 (908)
T ss_pred CCcCchHHhcchHhcCCccccccCCCCchHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEEecCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHhccCCCeEEECCCcchhhHHHHhhccchhhhhccCCCCceEEEeecchhhhhccCCCceeccCCCCCCccchH
Q 002515 81 MIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYP 160 (913)
Q Consensus 81 ~~~~~r~~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~tPLiiSg~~~~~~~~y~ 160 (913)
+++.+|+.+|+||||||||++||||||||||+.++++.||| +++|||||||||||||+||||||||||.+...+.|.
T Consensus 161 ~~~~~r~~~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr---~~~~aIvDEvDsiLiDEArtPLIISg~~~~~~~~y~ 237 (908)
T PRK13107 161 LGQQEKKAAYNADITYGTNNEFGFDYLRDNMAFSPQERVQR---PLHYALIDEVDSILIDEARTPLIISGAAEDSSELYI 237 (908)
T ss_pred CCHHHHHhcCCCCeEEeCCCcccchhhhccCccchhhhhcc---ccceeeecchhhhccccCCCceeecCCCccchHHHH
Confidence 99999999999999999999999999999999998899999 999999999999999999999999999998888999
Q ss_pred HHHHHHHHhccC-----------CCeEEeCCCCeeeccHhhHHHHHHHh---cc----CCCCCCCC-cHHHHHHHHHHHH
Q 002515 161 VAAKVAELLVQG-----------LHYTVELKNNSVELTEEGIALAEMAL---ET----NDLWDEND-PWARFVMNALKAK 221 (913)
Q Consensus 161 ~~~~~v~~l~~~-----------~~y~~d~~~k~v~Lt~~G~~~~e~~~---~~----~~L~~~~~-~l~~~i~~Al~A~ 221 (913)
.++.++..|.+. .||.+|++.++++||++|+.++|.++ ++ ++||+..+ .|.+||++||+|+
T Consensus 238 ~~~~~v~~L~~~~~~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~l~~~~~~~~~~~l~~~~~~~~~~~i~~aL~A~ 317 (908)
T PRK13107 238 KINTLIPNLIRQDKEDTEEYVGEGDYSIDEKAKQVHFTERGQEKVENLLIERGMLAEGDSLYSAANISLLHHVNAALRAH 317 (908)
T ss_pred HHHHHHHHHHhhhhccccccCCCCCEEEecCCCeeeechHHHHHHHHHHHhCCcccCcccccCchhhHHHHHHHHHHHHH
Confidence 999999998742 59999999999999999999999987 54 68998755 7899999999999
Q ss_pred HhhccCcceEEECCeEEEEeCCCCccccCcccChhhhHHHHhHhCCcccCCceeeeeeeehhHHhhcCcccccCCCcccH
Q 002515 222 EFYRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTE 301 (913)
Q Consensus 222 ~l~~~d~dYiV~dg~V~iVD~~TGR~~~gr~ws~GLHQaieaKEgv~i~~e~~t~a~IT~q~~F~~Y~kL~GmTGTa~te 301 (913)
++|++|+||||+||+|+|||++|||+|+||+||+||||||||||||+|+++++|+|+|||||||++|++|+||||||+|+
T Consensus 318 ~lf~~d~dYiV~dg~V~IVDe~TGRim~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~kL~GMTGTa~te 397 (908)
T PRK13107 318 TLFEKDVDYIVQDNEVIIVDEHTGRTMPGRRWSEGLHQAVEAKEGVHIQNENQTLASITFQNYFRQYEKLAGMTGTADTE 397 (908)
T ss_pred HHHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHhcCCCCCCCceeeeeehHHHHHHhhhHhhcccCCChHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHCCCCeE
Q 002515 302 EKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHN 381 (913)
Q Consensus 302 ~~Ef~~iY~l~vv~IPt~~p~~R~d~~d~v~~t~~~k~~aii~ei~~~~~~grPVLI~t~Si~~SE~ls~~L~~~gi~~~ 381 (913)
+.||+++||++|++||||+|++|+|+||.||.|..+||.||+++|.++|++||||||||.|++.||.+|.+|+..|++|+
T Consensus 398 ~~Ef~~iY~l~Vv~IPTnkp~~R~d~~d~iy~t~~~K~~Aii~ei~~~~~~GrpVLV~t~sv~~se~ls~~L~~~gi~~~ 477 (908)
T PRK13107 398 AFEFQHIYGLDTVVVPTNRPMVRKDMADLVYLTADEKYQAIIKDIKDCRERGQPVLVGTVSIEQSELLARLMVKEKIPHE 477 (908)
T ss_pred HHHHHHHhCCCEEECCCCCCccceeCCCcEEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCcHHHHHHHHHHHHHCCCCeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccCCcchhhHHHHHHhcCCCccEEEEcCCCCCCcceecCCChhHHHHHHHHHHHHHHHhhhhcccccccCCCCcchhh
Q 002515 382 VLNARPKYAAREAETVAQAGRKYAITISTNMAGRGTDIILGGNPKMLAKKIIEDRLLLLLTREALNVEVDDKTSSPKVLS 461 (913)
Q Consensus 382 vLnA~~k~~~~Ea~Iia~AG~~G~VTIATnmAGRGTDIkLgg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (913)
+||| +++++|++||++||++|+||||||||||||||+|||||++.++ . +. + +
T Consensus 478 vLna--k~~~~Ea~ii~~Ag~~G~VtIATnmAGRGTDIkLggn~~~~~~----~-----~~-~-~--------------- 529 (908)
T PRK13107 478 VLNA--KFHEREAEIVAQAGRTGAVTIATNMAGRGTDIVLGGNWNMEIE----A-----LE-N-P--------------- 529 (908)
T ss_pred eccC--cccHHHHHHHHhCCCCCcEEEecCCcCCCcceecCCchHHhhh----h-----hc-c-h---------------
Confidence 9999 5889999999999999999999999999999999999986211 0 00 0 0
Q ss_pred hhhhcchhHHHHHHHHHHHhhhccccCCchhhhhhhhhhhhhhhhhhhhhHHHHHHHHhhhccCCCCChhhHHHHHHHhh
Q 002515 462 EIKLGSSSLALLAKAALLAKYVGKAEGKSWTYQEAKSFFSESVEMSQSMNLKELQKLIDKQSAMYPLGPTVALTYLSVLK 541 (913)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (913)
-...+.
T Consensus 530 --------------------------------------------------------------------------~~~~~~ 535 (908)
T PRK13107 530 --------------------------------------------------------------------------TAEQKA 535 (908)
T ss_pred --------------------------------------------------------------------------hhHHHH
Confidence 012356
Q ss_pred hhhhcccccchhhhhcCceEEEeccCCCchhhHhhhhcccccCCCCCceeEEEeccchhhhhccCCchHHHHHHhhcCCC
Q 002515 542 DCEVHCSNEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDTSWAVDLISRITND 621 (913)
Q Consensus 542 ~~~~~~~~~~~~V~~~GGL~VIgTerhes~RiD~QLrGRagRQGdpGss~f~lSLeD~l~~~f~~~~~~~~~~~~~~~~~ 621 (913)
+++..|.+++++|+++|||||||||||||||||||||||||||||||||+|||||||+||+.|| ++++.++|++++++
T Consensus 536 ~~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~lSlED~L~r~f~--~~~~~~~~~~~~~~ 613 (908)
T PRK13107 536 KIKADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFYLSMEDSLMRIFA--SDRVSGMMKKLGME 613 (908)
T ss_pred HHHHHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCceeEEEEeCcHHHHHhC--hHHHHHHHHHcCCC
Confidence 7788899999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred CCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHhc
Q 002515 622 EDMPIEGDAIVRQLLGLQISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSILTGANESCSQQIFQYMQAVVDEIIFGN 701 (913)
Q Consensus 622 ~~~~i~~~~~~~~i~~aQ~~~E~~~~~~Rk~l~~yd~v~~~QR~~IY~~R~~iL~~~~~~~~~~i~~~~~~~v~~iv~~~ 701 (913)
+++||+|++++++|++||++||++||++||+|++||+|||.||++||++|+.+|.+ +++.+.|.+|++++++++++.+
T Consensus 614 e~~~i~~~~~~~~i~~aQ~~vE~~~~~~Rk~ll~yD~V~n~QR~vIY~~R~~iL~~--~~~~~~i~~~~~~~i~~~v~~~ 691 (908)
T PRK13107 614 EGEAIEHPWVSRAIENAQRKVEARNFDIRKQLLEFDDVANDQRQVVYAQRNELMDA--ESIEDTIKNIQDDVINGVIDQY 691 (908)
T ss_pred CCCccccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999954 4799999999999999999987
Q ss_pred CCCCCCCCcCCHHHHHHHHHHHhccchhhhhccCCccchhhhhhcccccccccccCCCCCCCCCCCccccccccccchhh
Q 002515 702 VDPLKHPRYWSLDKLLKEFIAIAGKILDDLFAGISGDTLLKSIEELPELNSIDINNFYFPDLPKPPNLFRGIRRKSSSLK 781 (913)
Q Consensus 702 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 781 (913)
..+...+++|++++|...+...++..++ +.
T Consensus 692 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~-----~~--------------------------------------------- 721 (908)
T PRK13107 692 IPPQSVEELWDVPGLEQRLHQEFMLKLP-----IQ--------------------------------------------- 721 (908)
T ss_pred cCCCcchhhccHHHHHHHHHHHcCCCCC-----HH---------------------------------------------
Confidence 6555456789999988766533211000 00
Q ss_pred hhhhhcccccccccccccchHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhh
Q 002515 782 RWLAICSDDLTKNGRYRATTNLLRKYLGDILIASYLNVVQESRYDDVYMKEVERAVLVKTLDCFWRDHLINMNRLSSAVN 861 (913)
Q Consensus 782 ~~~~~~~d~~~~~~~~~~~~~~~~~~l~e~~~~~y~~k~~~~~~~~~~~~~~eR~ilLk~ID~~W~eHLd~Md~LRegI~ 861 (913)
.+. ++ ......+++.+++.+.+.+.|..|. ..++++.+++|||.++|++||.+|++||++||+||+||+
T Consensus 722 ~~~----~~-----~~~~~~~~~~~~l~~~~~~~y~~k~--~~~~~~~~~~~er~i~L~~iD~~W~eHL~~md~Lr~~I~ 790 (908)
T PRK13107 722 EWL----DK-----EDDLHEETLRERIVTSWSDAYKAKE--EMVGAQVLRQFEKAVMLQTLDGLWKEHLAAMDHLRQGIH 790 (908)
T ss_pred Hhh----hh-----hccCCHHHHHHHHHHHHHHHHHHHH--HHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 000 00 0011346788899999999997653 456788999999999999999999999999999999999
Q ss_pred cccccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhHhccc
Q 002515 862 VRSFGHRNPLEEYKIDGCRFFISMLSATRRLTVESLVQYWS 902 (913)
Q Consensus 862 LRsYgQKDPl~EYkkEaf~lF~~M~~~I~~~~v~~l~~~~~ 902 (913)
||+||||||+.|||+|||++|+.|+.+|+.+++++||+++.
T Consensus 791 lr~y~QkdPl~eYk~Ea~~lF~~m~~~i~~~~~~~l~~~~~ 831 (908)
T PRK13107 791 LRGYAQKNPKQEYKRESFELFQQLLETLKHDVISVLSKVQV 831 (908)
T ss_pred hhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999998775
No 7
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=2.3e-205 Score=1809.33 Aligned_cols=733 Identities=40% Similarity=0.654 Sum_probs=676.6
Q ss_pred CCCchhHHHHHHHHhcCCeEEecCCCchHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCC
Q 002515 1 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRG 80 (913)
Q Consensus 1 ~rp~dvQl~g~l~L~~G~IaEm~TGEGKTLva~lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLsv~~i~~~ 80 (913)
|||||||++||++||+|+||||+|||||||+|+||+|++||.|++|||||||+|||+||++||++||++|||+|++++++
T Consensus 81 ~~~ydvQliGg~~Lh~G~Iaem~TGeGKTL~a~Lpa~~~al~G~~V~VvTpn~yLA~qd~e~m~~l~~~lGLtv~~i~gg 160 (896)
T PRK13104 81 LRHFDVQLIGGMVLHEGNIAEMRTGEGKTLVATLPAYLNAISGRGVHIVTVNDYLAKRDSQWMKPIYEFLGLTVGVIYPD 160 (896)
T ss_pred CCcchHHHhhhhhhccCccccccCCCCchHHHHHHHHHHHhcCCCEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHhccCCCeEEECCCcchhhHHHHhhccchhhhhccCCCCceEEEeecchhhhhccCCCceeccCCCCCCccchH
Q 002515 81 MIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYP 160 (913)
Q Consensus 81 ~~~~~r~~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~tPLiiSg~~~~~~~~y~ 160 (913)
+++++|+.+|.|||+||||++||||||||+|+.+.++.|+| +++||||||||||||||||||||||||.+...+.|.
T Consensus 161 ~~~~~r~~~y~~dIvygT~grlgfDyLrd~~~~~~~~~v~r---~l~~~IvDEaDsiLIDeArtPLIISg~~~~~~~~y~ 237 (896)
T PRK13104 161 MSHKEKQEAYKADIVYGTNNEYGFDYLRDNMAFSLTDKVQR---ELNFAIVDEVDSILIDEARTPLIISGAAEDSSELYI 237 (896)
T ss_pred CCHHHHHHHhCCCEEEECChhhhHHHHhcCCccchHhhhcc---ccceEEeccHhhhhhhccCCceeeeCCCccchHHHH
Confidence 99999999999999999999999999999999888888998 999999999999999999999999999998889999
Q ss_pred HHHHHHHHhccC------CCeEEeCCCCeeeccHhhHHHHHHHh---cc----CCCCCCCC-cHHHHHHHHHHHHHhhcc
Q 002515 161 VAAKVAELLVQG------LHYTVELKNNSVELTEEGIALAEMAL---ET----NDLWDEND-PWARFVMNALKAKEFYRR 226 (913)
Q Consensus 161 ~~~~~v~~l~~~------~~y~~d~~~k~v~Lt~~G~~~~e~~~---~~----~~L~~~~~-~l~~~i~~Al~A~~l~~~ 226 (913)
.++.++..|.++ .||.+|++.++++||++|+.++|.++ ++ ++||+..+ .+.+||++||+|+++|++
T Consensus 238 ~~~~~v~~l~~~~~~~~~~dy~idek~~~v~Lte~G~~~~e~~~~~~~il~~~~~l~~~~~~~~~~~i~~aL~A~~lf~~ 317 (896)
T PRK13104 238 KINSLIPQLKKQEEEGDEGDYTIDEKQKQAHLTDAGHLHIEELLTKAKLLDPGESLYHASNIMLMHHVNAALKAHAMFHR 317 (896)
T ss_pred HHHHHHHHHHhccccCCCCCEEEEcCCCceEEchHHHHHHHHHHHhCCccCCcccccCchhhhHHHHHHHHHHHHHHhcC
Confidence 999999999876 69999999999999999999999988 66 68998654 789999999999999999
Q ss_pred CcceEEECCeEEEEeCCCCccccCcccChhhhHHHHhHhCCcccCCceeeeeeeehhHHhhcCcccccCCCcccHHHHHH
Q 002515 227 DVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFL 306 (913)
Q Consensus 227 d~dYiV~dg~V~iVD~~TGR~~~gr~ws~GLHQaieaKEgv~i~~e~~t~a~IT~q~~F~~Y~kL~GmTGTa~te~~Ef~ 306 (913)
|+||||+||+|+|||++|||+|+||+||+||||||||||||+|+++++|+|+|||||||++|+||+||||||++++.||+
T Consensus 318 d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaKE~v~i~~e~~t~AsIT~Qn~Fr~Y~kLsGMTGTa~te~~Ef~ 397 (896)
T PRK13104 318 DIDYIVKDNQVVIVDEHTGRTMPGRRWSEGLHQAVEAKEGVPIQNENQTLASITFQNFFRMYNKLSGMTGTADTEAYEFQ 397 (896)
T ss_pred CCceEEECCEEEEEECCCCCcCCCCCcChHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhccCCCCChhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEeccC
Q 002515 307 KMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNAR 386 (913)
Q Consensus 307 ~iY~l~vv~IPt~~p~~R~d~~d~v~~t~~~k~~aii~ei~~~~~~grPVLI~t~Si~~SE~ls~~L~~~gi~~~vLnA~ 386 (913)
++||++|++||||+|++|+|+||.||.|..+||.||+++|.++|++||||||||+|++.||.+|.+|++.||+|++|||
T Consensus 398 ~iY~l~Vv~IPtnkp~~R~d~~d~v~~t~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~sE~ls~~L~~~gi~h~vLna- 476 (896)
T PRK13104 398 QIYNLEVVVIPTNRSMIRKDEADLVYLTQADKFQAIIEDVRECGVRKQPVLVGTVSIEASEFLSQLLKKENIKHQVLNA- 476 (896)
T ss_pred HHhCCCEEECCCCCCcceecCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCCeEeecC-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchhhHHHHHHhcCCCccEEEEcCCCCCCcceecCCChhHHHHHHHHHHHHHHHhhhhcccccccCCCCcchhhhhhhc
Q 002515 387 PKYAAREAETVAQAGRKYAITISTNMAGRGTDIILGGNPKMLAKKIIEDRLLLLLTREALNVEVDDKTSSPKVLSEIKLG 466 (913)
Q Consensus 387 ~k~~~~Ea~Iia~AG~~G~VTIATnmAGRGTDIkLgg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (913)
+++++||+||++||++|+||||||||||||||+|||||++... +. +.
T Consensus 477 -k~~q~Ea~iia~Ag~~G~VtIATNmAGRGtDI~Lggn~~~~~~----~~---------~~------------------- 523 (896)
T PRK13104 477 -KFHEKEAQIIAEAGRPGAVTIATNMAGRGTDIVLGGSLAADLA----NL---------PA------------------- 523 (896)
T ss_pred -CCChHHHHHHHhCCCCCcEEEeccCccCCcceecCCchhhhhh----cc---------cc-------------------
Confidence 5889999999999999999999999999999999999985210 00 00
Q ss_pred chhHHHHHHHHHHHhhhccccCCchhhhhhhhhhhhhhhhhhhhhHHHHHHHHhhhccCCCCChhhHHHHHHHhhhhhhc
Q 002515 467 SSSLALLAKAALLAKYVGKAEGKSWTYQEAKSFFSESVEMSQSMNLKELQKLIDKQSAMYPLGPTVALTYLSVLKDCEVH 546 (913)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 546 (913)
+ .-...+++++..
T Consensus 524 --------------------~-----------------------------------------------~~~~~~~~~~~~ 536 (896)
T PRK13104 524 --------------------D-----------------------------------------------ASEQEKEAVKKE 536 (896)
T ss_pred --------------------c-----------------------------------------------hhhHHHHHHHHH
Confidence 0 002345677888
Q ss_pred ccccchhhhhcCceEEEeccCCCchhhHhhhhcccccCCCCCceeEEEeccchhhhhccCCchHHHHHHhhcCCCCCCCc
Q 002515 547 CSNEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDTSWAVDLISRITNDEDMPI 626 (913)
Q Consensus 547 ~~~~~~~V~~~GGL~VIgTerhes~RiD~QLrGRagRQGdpGss~f~lSLeD~l~~~f~~~~~~~~~~~~~~~~~~~~~i 626 (913)
|.+++++|+++|||||||||||||||||||||||||||||||||+||||||||||++|| ++++.++|+++++++++||
T Consensus 537 ~~~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~lSleD~l~~~f~--~~~~~~~~~~~~~~~~~~i 614 (896)
T PRK13104 537 WQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDNLMRIFA--SERVASMMRRLGMQPGEPI 614 (896)
T ss_pred hhhhhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcHHHHHhC--hHHHHHHHHHcCCCCCCcC
Confidence 99999999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHhcCCCCC
Q 002515 627 EGDAIVRQLLGLQISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSILTGANESCSQQIFQYMQAVVDEIIFGNVDPLK 706 (913)
Q Consensus 627 ~~~~~~~~i~~aQ~~~E~~~~~~Rk~l~~yd~v~~~QR~~IY~~R~~iL~~~~~~~~~~i~~~~~~~v~~iv~~~~~~~~ 706 (913)
++++++++|++||+++|++||++||++++||+|||.||++||++|++||.+ +++.+.+..|++++++++++.+..+..
T Consensus 615 ~~~~~~~~i~~aQ~~vE~~~~~~Rk~ll~yd~V~n~QR~~iY~~R~~iL~~--~~~~~~i~~~~~~~i~~~~~~~~~~~~ 692 (896)
T PRK13104 615 EHSLVTRAIENAQRKLEGHHFDVRKQLLDYDNVANDQRQVIYTQRASIMAM--TDTQEVVEMMREEVMDSLVDTYIPPQS 692 (896)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CcHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 999999999999999999999999999999999999999999999999965 478999999999999999998865444
Q ss_pred CCCcCCHHHHHHHHHHHhccchhhhhccCCccchhhhhhcccccccccccCCCCCCCCCCCccccccccccchhhhhhhh
Q 002515 707 HPRYWSLDKLLKEFIAIAGKILDDLFAGISGDTLLKSIEELPELNSIDINNFYFPDLPKPPNLFRGIRRKSSSLKRWLAI 786 (913)
Q Consensus 707 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 786 (913)
.+++|++++|...+...++..+. + + .|.
T Consensus 693 ~~~~~~~~~l~~~~~~~~~~~~~-----~-------------------------~--------------------~~~-- 720 (896)
T PRK13104 693 LEDQWDPQALSDVLSDEFKIKAP-----V-------------------------P--------------------DWI-- 720 (896)
T ss_pred chhhccHHHHHHHHHHhcCCCCC-----h-------------------------h--------------------hhh--
Confidence 46789999998776543211000 0 0 000
Q ss_pred cccccccccccccchHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhccccc
Q 002515 787 CSDDLTKNGRYRATTNLLRKYLGDILIASYLNVVQESRYDDVYMKEVERAVLVKTLDCFWRDHLINMNRLSSAVNVRSFG 866 (913)
Q Consensus 787 ~~d~~~~~~~~~~~~~~~~~~l~e~~~~~y~~k~~~~~~~~~~~~~~eR~ilLk~ID~~W~eHLd~Md~LRegI~LRsYg 866 (913)
++ ....+.+++++++.+.+.+.|..|. ..++++.+++|||.++|++||.+|++||++||+||+|||||+||
T Consensus 721 --~~-----~~~~~~~~~~~~l~~~~~~~y~~k~--~~~g~~~~~~~er~i~L~~iD~~W~ehL~~md~Lr~~I~lr~y~ 791 (896)
T PRK13104 721 --DK-----DHSIQPEQIKEKILALAIEHYDEKV--RKVGRPVISQFEKSIILQTLDNHWREHLAAMDQLRQGIHLRGYA 791 (896)
T ss_pred --hh-----hccCCHHHHHHHHHHHHHHHHHHHH--HhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhc
Confidence 00 0011346788999999999997653 45688899999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhHhccc
Q 002515 867 HRNPLEEYKIDGCRFFISMLSATRRLTVESLVQYWS 902 (913)
Q Consensus 867 QKDPl~EYkkEaf~lF~~M~~~I~~~~v~~l~~~~~ 902 (913)
||||+.|||+|||+||+.|+.+|+.+++++||+.++
T Consensus 792 QkdPl~eYk~Ea~~~F~~m~~~i~~~~v~~l~~~~~ 827 (896)
T PRK13104 792 QKDPKQEYKKEAFSLFTMMLDNLKYEVIRILSSVEI 827 (896)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999643
No 8
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=3.9e-204 Score=1797.87 Aligned_cols=734 Identities=47% Similarity=0.767 Sum_probs=686.3
Q ss_pred CCCchhHHHHHHHHhcCCeEEecCCCchHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCC
Q 002515 1 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRG 80 (913)
Q Consensus 1 ~rp~dvQl~g~l~L~~G~IaEm~TGEGKTLva~lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLsv~~i~~~ 80 (913)
|||||||++||++||+|+||||+|||||||||+||+|++||.|++|||||||+|||+||++||+|+|++|||+|++++++
T Consensus 80 ~~~~dvQlig~l~L~~G~Iaem~TGeGKTLva~lpa~l~aL~G~~V~IvTpn~yLA~rd~e~~~~l~~~LGlsv~~i~~~ 159 (830)
T PRK12904 80 MRHFDVQLIGGMVLHEGKIAEMKTGEGKTLVATLPAYLNALTGKGVHVVTVNDYLAKRDAEWMGPLYEFLGLSVGVILSG 159 (830)
T ss_pred CCCCccHHHhhHHhcCCchhhhhcCCCcHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHHhhcCCeEEEEcCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHhccCCCeEEECCCcchhhHHHHhhccchhhhhccCCCCceEEEeecchhhhhccCCCceeccCCCCCCccchH
Q 002515 81 MIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYP 160 (913)
Q Consensus 81 ~~~~~r~~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~tPLiiSg~~~~~~~~y~ 160 (913)
+++++|+.+|.||||||||++||||||||+|+.+.++.++| +++||||||||||||||||||||||||.+.+.++|.
T Consensus 160 ~~~~er~~~y~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r---~~~~aIvDEaDsiLIDeArtpLiiSg~~~~~~~~y~ 236 (830)
T PRK12904 160 MSPEERREAYAADITYGTNNEFGFDYLRDNMVFSLEERVQR---GLNYAIVDEVDSILIDEARTPLIISGPAEDSSELYK 236 (830)
T ss_pred CCHHHHHHhcCCCeEEECCcchhhhhhhcccccchhhhccc---ccceEEEechhhheeccCCCceeeECCCCcccHHHH
Confidence 99999999999999999999999999999999988889998 999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCCeEEeCCCCeeeccHhhHHHHHHHhccCCCCCCCC-cHHHHHHHHHHHHHhhccCcceEEECCeEEE
Q 002515 161 VAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDEND-PWARFVMNALKAKEFYRRDVQYIVRNGKALI 239 (913)
Q Consensus 161 ~~~~~v~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~-~l~~~i~~Al~A~~l~~~d~dYiV~dg~V~i 239 (913)
.+++++..|.++.||.+|++.++++||++|+.++|.++++++||+..+ +|.+||++||+|+++|++|+||||+||+|+|
T Consensus 237 ~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~~~ly~~~~~~~~~~i~~AL~A~~l~~~d~dYiV~dg~V~i 316 (830)
T PRK12904 237 RANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPENIALVHHLNQALRAHELFKRDVDYIVKDGEVVI 316 (830)
T ss_pred HHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHHHHHHhCCccccChhhhHHHHHHHHHHHHHHHHhcCCcEEEECCEEEE
Confidence 999999999988899999999999999999999999999999999765 7899999999999999999999999999999
Q ss_pred EeCCCCccccCcccChhhhHHHHhHhCCcccCCceeeeeeeehhHHhhcCcccccCCCcccHHHHHHHHhCCCeEEeCCC
Q 002515 240 INELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPVIEVPTN 319 (913)
Q Consensus 240 VD~~TGR~~~gr~ws~GLHQaieaKEgv~i~~e~~t~a~IT~q~~F~~Y~kL~GmTGTa~te~~Ef~~iY~l~vv~IPt~ 319 (913)
||++|||+|+||+||+||||||||||||+|+++++|+|+|||||||++|++|+||||||++++.||+++||++|++||||
T Consensus 317 vDe~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY~l~vv~IPtn 396 (830)
T PRK12904 317 VDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEFREIYNLDVVVIPTN 396 (830)
T ss_pred EECCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeeeeHHHHHHhcchhcccCCCcHHHHHHHHHHhCCCEEEcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccCCCeEEeChhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEeccCCcchhhHHHHHHh
Q 002515 320 LPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQ 399 (913)
Q Consensus 320 ~p~~R~d~~d~v~~t~~~k~~aii~ei~~~~~~grPVLI~t~Si~~SE~ls~~L~~~gi~~~vLnA~~k~~~~Ea~Iia~ 399 (913)
+|++|+|+||.||.|..+||.||+++|.++|.+||||||||.|++.||.+|..|.+.|++|++||| +++++|++|++.
T Consensus 397 kp~~r~d~~d~i~~t~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~gi~~~vLna--kq~eREa~Iia~ 474 (830)
T PRK12904 397 RPMIRIDHPDLIYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIPHNVLNA--KNHEREAEIIAQ 474 (830)
T ss_pred CCeeeeeCCCeEEECHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCceEeccC--chHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999999999 589999999999
Q ss_pred cCCCccEEEEcCCCCCCcceecCCChhHHHHHHHHHHHHHHHhhhhcccccccCCCCcchhhhhhhcchhHHHHHHHHHH
Q 002515 400 AGRKYAITISTNMAGRGTDIILGGNPKMLAKKIIEDRLLLLLTREALNVEVDDKTSSPKVLSEIKLGSSSLALLAKAALL 479 (913)
Q Consensus 400 AG~~G~VTIATnmAGRGTDIkLgg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (913)
||++|+||||||||||||||+|||||+++++..+..
T Consensus 475 Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~-------------------------------------------- 510 (830)
T PRK12904 475 AGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEE-------------------------------------------- 510 (830)
T ss_pred cCCCceEEEecccccCCcCccCCCchhhhhhhhhhh--------------------------------------------
Confidence 999999999999999999999999999998754310
Q ss_pred HhhhccccCCchhhhhhhhhhhhhhhhhhhhhHHHHHHHHhhhccCCCCChhhHHHHHHHhhhhhhcccccchhhhhcCc
Q 002515 480 AKYVGKAEGKSWTYQEAKSFFSESVEMSQSMNLKELQKLIDKQSAMYPLGPTVALTYLSVLKDCEVHCSNEGSEVKRLGG 559 (913)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GG 559 (913)
.+.....+++..|.+++++|+++||
T Consensus 511 -------------------------------------------------------~~~~~~~~~~~~~~~~~~~v~~~GG 535 (830)
T PRK12904 511 -------------------------------------------------------ETEEQIAKIKAEWQEEHEEVLEAGG 535 (830)
T ss_pred -------------------------------------------------------hhhHHHHHHHHHHhhhhhhHHHcCC
Confidence 0123455678889999999999999
Q ss_pred eEEEeccCCCchhhHhhhhcccccCCCCCceeEEEeccchhhhhccCCchHHHHHHhhcCCCCCCCccchHHHHHHHHHH
Q 002515 560 LHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDTSWAVDLISRITNDEDMPIEGDAIVRQLLGLQ 639 (913)
Q Consensus 560 L~VIgTerhes~RiD~QLrGRagRQGdpGss~f~lSLeD~l~~~f~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~aQ 639 (913)
|||||||||||||||||||||||||||||||+||||||||||+.|| ++++.++|.++++++++||++++++++|++||
T Consensus 536 LhVigTerhesrRid~QlrGRagRQGdpGss~f~lSleD~l~~~f~--~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~aQ 613 (830)
T PRK12904 536 LHVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDDLMRIFG--SDRVKGMMDRLGMKEGEAIEHKMVTRAIENAQ 613 (830)
T ss_pred CEEEecccCchHHHHHHhhcccccCCCCCceeEEEEcCcHHHHhhc--hHHHHHHHHHcCCCCCCccccHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHH
Q 002515 640 ISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSILTGANESCSQQIFQYMQAVVDEIIFGNVDPLKHPRYWSLDKLLKE 719 (913)
Q Consensus 640 ~~~E~~~~~~Rk~l~~yd~v~~~QR~~IY~~R~~iL~~~~~~~~~~i~~~~~~~v~~iv~~~~~~~~~~~~~~~~~l~~~ 719 (913)
+++|++||++||++++||+|||.||++||++|++||++ +++.+.|.+|++++++++++.+..+...+++|++++|...
T Consensus 614 ~~~e~~~~~~Rk~~l~yd~v~~~QR~~iY~~R~~iL~~--~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~ 691 (830)
T PRK12904 614 KKVEGRNFDIRKQLLEYDDVMNDQRKVIYAQRNEILEG--EDLSETILDMREDVIEDLVDAYIPPGSYEEDWDLEGLEEA 691 (830)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CChHHHHHHHHHHHHHHHHHHhcCCCcChhhcCHHHHHHH
Confidence 99999999999999999999999999999999999964 4799999999999999999998876655788999999887
Q ss_pred HHHHhccchhhhhccCCccchhhhhhcccccccccccCCCCCCCCCCCccccccccccchhhhhhhhccccccccccccc
Q 002515 720 FIAIAGKILDDLFAGISGDTLLKSIEELPELNSIDINNFYFPDLPKPPNLFRGIRRKSSSLKRWLAICSDDLTKNGRYRA 799 (913)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~d~~~~~~~~~~ 799 (913)
+...++.... +..|.. + ..
T Consensus 692 l~~~~~~~~~--------------------------------------------------~~~~~~---~--------~~ 710 (830)
T PRK12904 692 LKTDFGLELP--------------------------------------------------IEEWLE---E--------GL 710 (830)
T ss_pred HHHHcCCCCC--------------------------------------------------hhHHhh---c--------CC
Confidence 6543211000 000000 0 11
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhcccccCCCcHHHHHHHHH
Q 002515 800 TTNLLRKYLGDILIASYLNVVQESRYDDVYMKEVERAVLVKTLDCFWRDHLINMNRLSSAVNVRSFGHRNPLEEYKIDGC 879 (913)
Q Consensus 800 ~~~~~~~~l~e~~~~~y~~k~~~~~~~~~~~~~~eR~ilLk~ID~~W~eHLd~Md~LRegI~LRsYgQKDPl~EYkkEaf 879 (913)
..+++++++.+.+.+.|..+. ..++++.++++||.++|++||.+|++||++|++||+|||||+||||||+.|||+|||
T Consensus 711 ~~~~~~~~l~~~~~~~y~~k~--~~~g~e~~~~~eR~i~L~~iD~~W~eHL~~md~LRegI~lR~y~QkdPl~eY~~ea~ 788 (830)
T PRK12904 711 DEEELRERILEAAEEAYEEKE--EELGEEQMREFERVVMLQVLDTKWREHLAAMDHLRQGIGLRGYAQKDPLQEYKREGF 788 (830)
T ss_pred CHHHHHHHHHHHHHHHHHHHH--HhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhccCCHHHHHHHHHH
Confidence 336788899999999997653 356788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhHhcccCcc
Q 002515 880 RFFISMLSATRRLTVESLVQYWSSPM 905 (913)
Q Consensus 880 ~lF~~M~~~I~~~~v~~l~~~~~~~~ 905 (913)
+||+.|+.+|+.+++++||+++..||
T Consensus 789 ~~F~~m~~~I~~~iv~~l~~~~i~~c 814 (830)
T PRK12904 789 ELFEEMLDSIKEEVVRTLMKVQIDPC 814 (830)
T ss_pred HHHHHHHHHHHHHHHHHHHHcccCCC
Confidence 99999999999999999998776444
No 9
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=3.3e-202 Score=1743.90 Aligned_cols=644 Identities=39% Similarity=0.602 Sum_probs=605.8
Q ss_pred CCCchhHHHHHHHHhcCCeEEecCCCchHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCC
Q 002515 1 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRG 80 (913)
Q Consensus 1 ~rp~dvQl~g~l~L~~G~IaEm~TGEGKTLva~lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLsv~~i~~~ 80 (913)
|||||||++|+++||+|+||||+||||||||++||+|++||.|++|||||||+|||+||++||+|+|++|||+|++++++
T Consensus 77 ~r~ydvQlig~l~Ll~G~VaEM~TGEGKTLvA~l~a~l~AL~G~~VhvvT~NdyLA~RDae~m~~ly~~LGLsvg~i~~~ 156 (764)
T PRK12326 77 LRPFDVQLLGALRLLAGDVIEMATGEGKTLAGAIAAAGYALQGRRVHVITVNDYLARRDAEWMGPLYEALGLTVGWITEE 156 (764)
T ss_pred CCcchHHHHHHHHHhCCCcccccCCCCHHHHHHHHHHHHHHcCCCeEEEcCCHHHHHHHHHHHHHHHHhcCCEEEEECCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHhccCCCeEEECCCcchhhHHHHhhccchhhhhccCCCCceEEEeecchhhhhccCCCceeccCCCCCCccchH
Q 002515 81 MIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYP 160 (913)
Q Consensus 81 ~~~~~r~~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~tPLiiSg~~~~~~~~y~ 160 (913)
+++++|+.+|.||||||||++||||||||||+.++++.++| +++|||||||||||||+||||||||||.+.. ..|.
T Consensus 157 ~~~~err~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R---~~~faIVDEvDSiLIDeArtPLiISg~~~~~-~~y~ 232 (764)
T PRK12326 157 STPEERRAAYACDVTYASVNEIGFDVLRDQLVTDVADLVSP---NPDVAIIDEADSVLVDEALVPLVLAGSTPGE-APRG 232 (764)
T ss_pred CCHHHHHHHHcCCCEEcCCcccccccchhhhccChHhhcCC---ccceeeecchhhheeccccCceeeeCCCcch-hHHH
Confidence 99999999999999999999999999999999998899998 9999999999999999999999999999887 8899
Q ss_pred HHHHHHHHhccCCCeEEeCCCCeeeccHhhHHHHHHHhccCCCCCCCC--cHHHHHHHHHHHHHhhccCcceEEECCeEE
Q 002515 161 VAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDEND--PWARFVMNALKAKEFYRRDVQYIVRNGKAL 238 (913)
Q Consensus 161 ~~~~~v~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~--~l~~~i~~Al~A~~l~~~d~dYiV~dg~V~ 238 (913)
.+++++..|.++.||.+|++.++++||++|+.++|+++++.++|+..+ .+.++|++||+|+++|++|+||||+||+|+
T Consensus 233 ~~~~~v~~L~~~~dy~ide~~k~v~LTe~G~~~~e~~l~~~~ly~~~~~~~~~~~i~~AL~A~~l~~~d~dYiV~dgeV~ 312 (764)
T PRK12326 233 EIAELVRRLREGKDYEIDDDGRNVHLTDKGARKVEKALGGIDLYSEEHVGTTLTQVNVALHAHALLQRDVHYIVRDGKVH 312 (764)
T ss_pred HHHHHHHhcCcCCcEEEEcCCCeeEecHHHHHHHHHHcCCccccCcchhHHHHHHHHHHHHHHHHHhcCCcEEEECCEEE
Confidence 999999999998999999999999999999999999999999998765 578999999999999999999999999999
Q ss_pred EEeCCCCccccCcccChhhhHHHHhHhCCcccCCceeeeeeeehhHHhhcCcccccCCCcccHHHHHHHHhCCCeEEeCC
Q 002515 239 IINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPVIEVPT 318 (913)
Q Consensus 239 iVD~~TGR~~~gr~ws~GLHQaieaKEgv~i~~e~~t~a~IT~q~~F~~Y~kL~GmTGTa~te~~Ef~~iY~l~vv~IPt 318 (913)
|||++|||+|+||+||+||||||||||||+|+++++|+|+|||||||++|++|+||||||+++++||+++||++|++|||
T Consensus 313 iVDe~TGRvm~grrwsdGLHQaIEaKE~v~i~~e~~t~AsIT~QnfFr~Y~kLsGMTGTa~t~~~Ef~~iY~l~Vv~IPt 392 (764)
T PRK12326 313 LINASRGRIAQLQRWPDGLQAAVEAKEGLETTETGEVLDTITVQALIGRYPTVCGMTGTAVAAGEQLRQFYDLGVSVIPP 392 (764)
T ss_pred EEECCCCCcCCCCccChHHHHHHHHHcCCCCCCCceeeehhhHHHHHHhcchheeecCCChhHHHHHHHHhCCcEEECCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccccCCCeEEeChhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEeccCCcchhhHHHHHH
Q 002515 319 NLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVA 398 (913)
Q Consensus 319 ~~p~~R~d~~d~v~~t~~~k~~aii~ei~~~~~~grPVLI~t~Si~~SE~ls~~L~~~gi~~~vLnA~~k~~~~Ea~Iia 398 (913)
|+|++|+|+||.||.|..+||.||+++|.++|++||||||||.||++||.||.+|++.||||+|||| +++++||+||+
T Consensus 393 nkp~~R~d~~d~iy~t~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~~gI~h~vLNA--k~~~~EA~IIa 470 (764)
T PRK12326 393 NKPNIREDEADRVYATAAEKNDAIVEHIAEVHETGQPVLVGTHDVAESEELAERLRAAGVPAVVLNA--KNDAEEARIIA 470 (764)
T ss_pred CCCceeecCCCceEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCCCcceeecc--CchHhHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 58999999999
Q ss_pred hcCCCccEEEEcCCCCCCcceecCCChhHHHHHHHHHHHHHHHhhhhcccccccCCCCcchhhhhhhcchhHHHHHHHHH
Q 002515 399 QAGRKYAITISTNMAGRGTDIILGGNPKMLAKKIIEDRLLLLLTREALNVEVDDKTSSPKVLSEIKLGSSSLALLAKAAL 478 (913)
Q Consensus 399 ~AG~~G~VTIATnmAGRGTDIkLgg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (913)
+||++|+||||||||||||||+|||||+
T Consensus 471 ~AG~~gaVTIATNMAGRGTDIkLg~~~~---------------------------------------------------- 498 (764)
T PRK12326 471 EAGKYGAVTVSTQMAGRGTDIRLGGSDE---------------------------------------------------- 498 (764)
T ss_pred hcCCCCcEEEEecCCCCccCeecCCCcc----------------------------------------------------
Confidence 9999999999999999999999999875
Q ss_pred HHhhhccccCCchhhhhhhhhhhhhhhhhhhhhHHHHHHHHhhhccCCCCChhhHHHHHHHhhhhhhcccccchhhhhcC
Q 002515 479 LAKYVGKAEGKSWTYQEAKSFFSESVEMSQSMNLKELQKLIDKQSAMYPLGPTVALTYLSVLKDCEVHCSNEGSEVKRLG 558 (913)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~G 558 (913)
+++++|+++|
T Consensus 499 ----------------------------------------------------------------------~~~~~V~~~G 508 (764)
T PRK12326 499 ----------------------------------------------------------------------ADRDRVAELG 508 (764)
T ss_pred ----------------------------------------------------------------------cchHHHHHcC
Confidence 1237999999
Q ss_pred ceEEEeccCCCchhhHhhhhcccccCCCCCceeEEEeccchhhhhccCCchHHHHHHhhcCCCCCCCccchHHHHHHHHH
Q 002515 559 GLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDTSWAVDLISRITNDEDMPIEGDAIVRQLLGL 638 (913)
Q Consensus 559 GL~VIgTerhes~RiD~QLrGRagRQGdpGss~f~lSLeD~l~~~f~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~a 638 (913)
||||||||||||+|||||||||||||||||||+||||||||||++|| +++ + .+.++++++||++++++++|++|
T Consensus 509 GLhVIgTerheSrRID~QLrGRaGRQGDpGss~f~lSleDdl~~~f~--~~~--~--~~~~~~~~~~i~~~~~~~~i~~a 582 (764)
T PRK12326 509 GLHVIGTGRHRSERLDNQLRGRAGRQGDPGSSVFFVSLEDDVVAANL--AGE--K--LPAQPDEDGRITSPKAADLVDHA 582 (764)
T ss_pred CcEEEeccCCchHHHHHHHhcccccCCCCCceeEEEEcchhHHHhcC--chh--h--hhcCCCCCCcCcChhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999 774 2 23377889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHH
Q 002515 639 QISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSILTGANESCSQQIFQYMQAVVDEIIFGNVDPLKHPRYWSLDKLLK 718 (913)
Q Consensus 639 Q~~~E~~~~~~Rk~l~~yd~v~~~QR~~IY~~R~~iL~~~~~~~~~~i~~~~~~~v~~iv~~~~~~~~~~~~~~~~~l~~ 718 (913)
|++||++||++||++++||+|||.||++||++|++||+++ ++.+.+ ...+
T Consensus 583 Qk~vE~~~~~~Rk~~~~yd~v~~~QR~~iy~~R~~il~~~--~~~~~~--------~~~~-------------------- 632 (764)
T PRK12326 583 QRVAEGQLLEIHANTWRYNQLIAQQRAIIVERRERLLRTD--TAWEEL--------AELA-------------------- 632 (764)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--hHHHHH--------HHHH--------------------
Confidence 9999999999999999999999999999999999999543 343220 0000
Q ss_pred HHHHHhccchhhhhccCCccchhhhhhcccccccccccCCCCCCCCCCCccccccccccchhhhhhhhcccccccccccc
Q 002515 719 EFIAIAGKILDDLFAGISGDTLLKSIEELPELNSIDINNFYFPDLPKPPNLFRGIRRKSSSLKRWLAICSDDLTKNGRYR 798 (913)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~d~~~~~~~~~ 798 (913)
+
T Consensus 633 ----------~--------------------------------------------------------------------- 633 (764)
T PRK12326 633 ----------P--------------------------------------------------------------------- 633 (764)
T ss_pred ----------H---------------------------------------------------------------------
Confidence 0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhcccccCCCcHHHHHHHH
Q 002515 799 ATTNLLRKYLGDILIASYLNVVQESRYDDVYMKEVERAVLVKTLDCFWRDHLINMNRLSSAVNVRSFGHRNPLEEYKIDG 878 (913)
Q Consensus 799 ~~~~~~~~~l~e~~~~~y~~k~~~~~~~~~~~~~~eR~ilLk~ID~~W~eHLd~Md~LRegI~LRsYgQKDPl~EYkkEa 878 (913)
..|..+ ...++++.+++++|.++|++||.+|++||++|++||+|||||+||||||+.|||+||
T Consensus 634 ---------------~~~~~~--~~~~~~~~~~~~~r~~~L~~iD~~W~ehl~~m~~Lr~~I~lr~y~q~dPl~ey~~ea 696 (764)
T PRK12326 634 ---------------ERYAEL--AEEVDEEVLEQAARQIMLYHLDRGWADHLAYLADVRESIHLRALGRQNPLDEFHRMA 696 (764)
T ss_pred ---------------HHHHHH--HHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhccCChHHHHHHHH
Confidence 000000 113456679999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhHhcccCc
Q 002515 879 CRFFISMLSATRRLTVESLVQYWSSP 904 (913)
Q Consensus 879 f~lF~~M~~~I~~~~v~~l~~~~~~~ 904 (913)
|++|+.|+.+|+.+++++++.++++.
T Consensus 697 ~~~F~~m~~~i~~~~~~~~~~~~~~~ 722 (764)
T PRK12326 697 VDAFKSLAADAVERAQETFETAEITD 722 (764)
T ss_pred HHHHHHHHHHHHHHHHHHHHheEeec
Confidence 99999999999999999999887644
No 10
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=1.9e-201 Score=1774.46 Aligned_cols=693 Identities=44% Similarity=0.705 Sum_probs=637.8
Q ss_pred CCCchhHHHHHHHHhcCCeEEecCCCchHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCC
Q 002515 1 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRG 80 (913)
Q Consensus 1 ~rp~dvQl~g~l~L~~G~IaEm~TGEGKTLva~lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLsv~~i~~~ 80 (913)
|+||||||+||++||+|+||||+|||||||||+||+|||||+|+||||||+|||||+||++||+|+|+|||||||||.++
T Consensus 137 m~~ydVQLiGgivLh~G~IAEM~TGEGKTLvatlp~yLnAL~G~gVHvVTvNDYLA~RDaewm~p~y~flGLtVg~i~~~ 216 (1025)
T PRK12900 137 MVPYDVQLIGGIVLHSGKISEMATGEGKTLVSTLPTFLNALTGRGVHVVTVNDYLAQRDKEWMNPVFEFHGLSVGVILNT 216 (1025)
T ss_pred ccccchHHhhhHHhhcCCccccCCCCCcchHhHHHHHHHHHcCCCcEEEeechHhhhhhHHHHHHHHHHhCCeeeeeCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHhccCCCeEEECCCcchhhHHHHhhccchhhhhccCCCCceEEEeecchhhhhccCCCceeccCCCCCC-ccch
Q 002515 81 MIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKD-VARY 159 (913)
Q Consensus 81 ~~~~~r~~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~tPLiiSg~~~~~-~~~y 159 (913)
+++++|+.+|.||||||||++||||||||||+.+++++||| +++|||||||||||||+||||||||||.+.. ...|
T Consensus 217 ~~~~~Rr~aY~~DItYgTn~EfGFDYLRDnma~~~~~~vqR---~~~faIVDEvDSvLIDeARTPLIISgp~~~~~~~~y 293 (1025)
T PRK12900 217 MRPEERREQYLCDITYGTNNEFGFDYLRDNMAGTPEEMVQR---DFYFAIVDEVDSVLIDEARTPLIISGPVPNADNSKF 293 (1025)
T ss_pred CCHHHHHHhCCCcceecCCCccccccchhccccchhhhhcc---CCceEEEechhhhhhccccCceEEeCCCCCcchHHH
Confidence 99999999999999999999999999999999999999999 9999999999999999999999999996655 5556
Q ss_pred HHHHH-------------------------------------------------HHHHhcc-------------------
Q 002515 160 PVAAK-------------------------------------------------VAELLVQ------------------- 171 (913)
Q Consensus 160 ~~~~~-------------------------------------------------~v~~l~~------------------- 171 (913)
..+.. +++.|.+
T Consensus 294 ~~~~~~~~~lv~~q~~l~~~~l~ea~~~~~~~~~~~~~~~~l~~~~~g~pknk~lik~L~~~~~~~~~~~~e~~y~~dn~ 373 (1025)
T PRK12900 294 QEIKPWIEQLVRAQQNLVASYLTEAEKALKTKPNDFDAGLALLRVKRGQPKNSRFIKMLSQQGIAKLVQSTENEYLKDNS 373 (1025)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhhhhhhhhhccCcchhHHHHHhhhhhhhhhhhhhhhHhhhhhh
Confidence 54432 2222322
Q ss_pred --------CCCeEEeCCCCeeeccHhhHHHHHHHhc--------------------------------cCC---CCCCCC
Q 002515 172 --------GLHYTVELKNNSVELTEEGIALAEMALE--------------------------------TND---LWDEND 208 (913)
Q Consensus 172 --------~~~y~~d~~~k~v~Lt~~G~~~~e~~~~--------------------------------~~~---L~~~~~ 208 (913)
+.||.+|++.++++||++|+.+++.++. .++ +|+...
T Consensus 374 ~~~~~~~~~~~~~iDek~~~v~LTe~G~~~~e~~~~~d~~~Fvlp~~~~~~~~ie~~~~l~~~~~~~~~~~l~~~~~~~~ 453 (1025)
T PRK12900 374 SRMHEVDDELYFAVDEKANTIDLTDKGREFLSKLSHQDSDLFLLPDVGTEIAAIESDASLSAADKIKKKDEVYRLFAERS 453 (1025)
T ss_pred hhccccCCCCeEEEEcCCCeeeecHhHHHHHHhhhccCchhhcccchhhhhhhhhcccccchhhhhhhhhHHHhhcchhh
Confidence 2489999999999999999999998531 123 444455
Q ss_pred cHHHHHHHHHHHHHhhccCcceEEECCeEEEEeCCCCccccCcccChhhhHHHHhHhCCcccCCceeeeeeeehhHHhhc
Q 002515 209 PWARFVMNALKAKEFYRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLY 288 (913)
Q Consensus 209 ~l~~~i~~Al~A~~l~~~d~dYiV~dg~V~iVD~~TGR~~~gr~ws~GLHQaieaKEgv~i~~e~~t~a~IT~q~~F~~Y 288 (913)
.+.|+|++||+|+++|++|+||||+||+|+|||++|||+|+||+||+||||||||||||+|+++++|+|+||||||||+|
T Consensus 454 ~~~h~i~qaLkA~~lf~kD~~YvV~dgkV~IVDe~TGRim~gRr~sdGLHQaIEaKE~v~i~~e~~t~AtIT~QnfFr~Y 533 (1025)
T PRK12900 454 ERLHNISQLLKAYSLFERDDEYVVQNGQVMIVDEFTGRILPGRRYSDGLHQAIEAKENVKIEGETQTMATITIQNFFRLY 533 (1025)
T ss_pred HHHHHHHHHHHHHHHHhcCCceEEECCEEEEEECCCCccCCCCCcchHHHHHHHHHcCCCCCCCceeeeeeeHHHHHHhc
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccCCCcccHHHHHHHHhCCCeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHH
Q 002515 289 PKLSGMTGTAKTEEKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEY 368 (913)
Q Consensus 289 ~kL~GmTGTa~te~~Ef~~iY~l~vv~IPt~~p~~R~d~~d~v~~t~~~k~~aii~ei~~~~~~grPVLI~t~Si~~SE~ 368 (913)
+||+||||||+|++.||+++|+++|++||||+|++|+|+||.||.|..+||.||+++|.+.|.+||||||||+|++.||.
T Consensus 534 ~kLaGMTGTA~te~~Ef~~iY~L~Vv~IPTnrP~~R~D~~d~vy~t~~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~ 613 (1025)
T PRK12900 534 KKLAGMTGTAETEASEFFEIYKLDVVVIPTNKPIVRKDMDDLVYKTRREKYNAIVLKVEELQKKGQPVLVGTASVEVSET 613 (1025)
T ss_pred hhhcccCCCChhHHHHHHHHhCCcEEECCCCCCcceecCCCeEecCHHHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCCCeEEeccCCcchhhHHHHHHhcCCCccEEEEcCCCCCCcceecCCChhHHHHHHHHHHHHHHHhhhhccc
Q 002515 369 LSDLLKQQGIPHNVLNARPKYAAREAETVAQAGRKYAITISTNMAGRGTDIILGGNPKMLAKKIIEDRLLLLLTREALNV 448 (913)
Q Consensus 369 ls~~L~~~gi~~~vLnA~~k~~~~Ea~Iia~AG~~G~VTIATnmAGRGTDIkLgg~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (913)
||++|++.||+|++||| +++++|++|++.||++|+||||||||||||||+||
T Consensus 614 Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATNMAGRGtDIkl~-------------------------- 665 (1025)
T PRK12900 614 LSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATNMAGRGTDIKLG-------------------------- 665 (1025)
T ss_pred HHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCCeEEEeccCcCCCCCcCCc--------------------------
Confidence 99999999999999999 68999999999999999999999999999999998
Q ss_pred ccccCCCCcchhhhhhhcchhHHHHHHHHHHHhhhccccCCchhhhhhhhhhhhhhhhhhhhhHHHHHHHHhhhccCCCC
Q 002515 449 EVDDKTSSPKVLSEIKLGSSSLALLAKAALLAKYVGKAEGKSWTYQEAKSFFSESVEMSQSMNLKELQKLIDKQSAMYPL 528 (913)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (913)
T Consensus 666 -------------------------------------------------------------------------------- 665 (1025)
T PRK12900 666 -------------------------------------------------------------------------------- 665 (1025)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ChhhHHHHHHHhhhhhhcccccchhhhhcCceEEEeccCCCchhhHhhhhcccccCCCCCceeEEEeccchhhhhccCCc
Q 002515 529 GPTVALTYLSVLKDCEVHCSNEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDT 608 (913)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerhes~RiD~QLrGRagRQGdpGss~f~lSLeD~l~~~f~~~~ 608 (913)
++|.++||||||||+||||+|||+||+||||||||||+|+||+|+||+|||.|| +
T Consensus 666 -----------------------~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ffvSleD~Lmr~f~--~ 720 (1025)
T PRK12900 666 -----------------------EGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVFYVSLEDELMRLFG--S 720 (1025)
T ss_pred -----------------------cchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEEechhHHHHHhhC--c
Confidence 368899999999999999999999999999999999999999999999999999 9
Q ss_pred hHHHHHHhhcCCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHH
Q 002515 609 SWAVDLISRITNDEDMPIEGDAIVRQLLGLQISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSILTGANESCSQQIFQ 688 (913)
Q Consensus 609 ~~~~~~~~~~~~~~~~~i~~~~~~~~i~~aQ~~~E~~~~~~Rk~l~~yd~v~~~QR~~IY~~R~~iL~~~~~~~~~~i~~ 688 (913)
+++.++|.+++.++++||++++++++|++||++||++||++||+|++||+|||.||++||++|+.+|.+ +++...|.+
T Consensus 721 ~~i~~~~~~~~~~e~e~I~~~~i~k~ie~AQk~vE~~nf~iRk~lleyDdv~n~QR~vIY~~R~~~L~~--~~~~~~i~~ 798 (1025)
T PRK12900 721 DRVISVMDRLGHEEGDVIEHSMITKSIERAQKKVEEQNFAIRKRLLEYDDVLNQQREVIYTRRRNGLIK--ERLTSDIFD 798 (1025)
T ss_pred HHHHHHHHHcCCCCCCcccchHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CcHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999965 479999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHhccchhhhhccCCccchhhhhhcccccccccccCCCCCCCCCCCc
Q 002515 689 YMQAVVDEIIFGNVDPLKHPRYWSLDKLLKEFIAIAGKILDDLFAGISGDTLLKSIEELPELNSIDINNFYFPDLPKPPN 768 (913)
Q Consensus 689 ~~~~~v~~iv~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 768 (913)
|++++++.+++.+. .+|++++|...+...+.... .+++ .
T Consensus 799 ~~~~~~~~~v~~~~------~~~~~~~l~~~~~~~~~~~~-----~~~~------------------------------~ 837 (1025)
T PRK12900 799 LLRDYCDTVVKKYH------KALDVDGLEEQVLRELSVEF-----KPER------------------------------D 837 (1025)
T ss_pred HHHHHHHHHHHHHh------hhccHHHHHHHHHHHhCccC-----CCCH------------------------------H
Confidence 99999999998764 26999998776643321000 0000 0
Q ss_pred cccccccccchhhhhhhhcccccccccccccchHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhHHHHH
Q 002515 769 LFRGIRRKSSSLKRWLAICSDDLTKNGRYRATTNLLRKYLGDILIASYLNVVQESRYDDVYMKEVERAVLVKTLDCFWRD 848 (913)
Q Consensus 769 ~~~~~~~~~~~i~~~~~~~~d~~~~~~~~~~~~~~~~~~l~e~~~~~y~~k~~~~~~~~~~~~~~eR~ilLk~ID~~W~e 848 (913)
. +.....+++.+++.+.+.+.|..|. ..++++.+++|||.++|++||.+|++
T Consensus 838 ~--------------------------~~~~~~~~~~~~l~~~~~~~y~~k~--~~~~~~~~~~~er~i~L~~iD~~W~e 889 (1025)
T PRK12900 838 T--------------------------FEREGVEGTADKLYNTALAFYRRKE--EAVPEDIMRQIEKYAVLSVIDQKWRE 889 (1025)
T ss_pred H--------------------------HhcCCHHHHHHHHHHHHHHHHHHHH--HhhCHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0111346778889999999997653 34678899999999999999999999
Q ss_pred HHHHHHHHHHhhhcccccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhHhc
Q 002515 849 HLINMNRLSSAVNVRSFGHRNPLEEYKIDGCRFFISMLSATRRLTVESLVQY 900 (913)
Q Consensus 849 HLd~Md~LRegI~LRsYgQKDPl~EYkkEaf~lF~~M~~~I~~~~v~~l~~~ 900 (913)
||++||+||+||+||+||||||+.|||+|||++|+.|+.+|+.+++++||+.
T Consensus 890 HL~~md~Lr~~I~lr~y~QkdPl~eYk~Ea~~lF~~m~~~i~~~~v~~l~~~ 941 (1025)
T PRK12900 890 HLREIDSLREGINLRAYGQKDPLLEYKQEAYRLFVDLLREIELETLSLAFKL 941 (1025)
T ss_pred HHHHHHHHHHhhhhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999883
No 11
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=100.00 E-value=5.6e-200 Score=1745.22 Aligned_cols=705 Identities=47% Similarity=0.758 Sum_probs=669.8
Q ss_pred CCCchhHHHHHHHHhcCCeEEecCCCchHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCC
Q 002515 1 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRG 80 (913)
Q Consensus 1 ~rp~dvQl~g~l~L~~G~IaEm~TGEGKTLva~lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLsv~~i~~~ 80 (913)
|||||||++||++||.|.||||+|||||||+++||+|+|||.|+||||||+|||||+||++||+|+|+|||||||++.++
T Consensus 79 ~~~~dVQliG~i~lh~g~iaEM~TGEGKTL~atlp~ylnaL~gkgVhvVTvNdYLA~RDae~m~~l~~~LGlsvG~~~~~ 158 (822)
T COG0653 79 MRHFDVQLLGGIVLHLGDIAEMRTGEGKTLVATLPAYLNALAGKGVHVVTVNDYLARRDAEWMGPLYEFLGLSVGVILAG 158 (822)
T ss_pred CChhhHHHhhhhhhcCCceeeeecCCchHHHHHHHHHHHhcCCCCcEEeeehHHhhhhCHHHHHHHHHHcCCceeeccCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHhccCCCeEEECCCcchhhHHHHhhccchhhhhccCCCCceEEEeecchhhhhccCCCceeccCCCCCCccchH
Q 002515 81 MIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYP 160 (913)
Q Consensus 81 ~~~~~r~~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~tPLiiSg~~~~~~~~y~ 160 (913)
|++++|+.+|+||||||||++||||||||||+.+.++.||| +++|+||||||||||||||||||||||....+.+|.
T Consensus 159 m~~~ek~~aY~~DItY~TnnElGFDYLRDNm~~~~ee~vqr---~~~faIvDEvDSILIDEARtPLiISG~~~~~~~~Y~ 235 (822)
T COG0653 159 MSPEEKRAAYACDITYGTNNELGFDYLRDNMVTSQEEKVQR---GLNFAIVDEVDSILIDEARTPLIISGPAEDSSELYK 235 (822)
T ss_pred CChHHHHHHHhcCceeccccccCcchhhhhhhccHHHhhhc---cCCeEEEcchhheeeeccccceeeecccccCchHHH
Confidence 99999999999999999999999999999999999999999 999999999999999999999999998888889999
Q ss_pred HHHHHHHHhccCCCeEEeCCCCeeeccHhhHHHHHHHhccCCCCCCCC-cHHHHHHHHHHHHHhhccCcceEEECCeEEE
Q 002515 161 VAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDEND-PWARFVMNALKAKEFYRRDVQYIVRNGKALI 239 (913)
Q Consensus 161 ~~~~~v~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~-~l~~~i~~Al~A~~l~~~d~dYiV~dg~V~i 239 (913)
.+++++..|....||++|++.|+++||++|+.++|++|++.+||+.++ .+.|++++||+|+.+|.+|+||||+||+|+|
T Consensus 236 ~~~~~v~~l~~~~d~~iDek~k~v~lte~G~~kae~~f~~~~Ly~~en~~~~h~~~~alrA~~l~~~D~dYIVrd~ev~I 315 (822)
T COG0653 236 KVDDLVRLLSEDEDFTIDEKSKNVSLTESGLEKAEELLGIENLYDLENVNLVHHLNQALRAHILFFRDVDYIVRDGEVVI 315 (822)
T ss_pred HHHHHHHHhccccceeecchhcccccchhhHHHHHHHhCcccccchhhHHHHhhHHHHHHHHHHhhcCCeeEEecCeEEE
Confidence 999999999998899999999999999999999999999999999876 5899999999999999999999999999999
Q ss_pred EeCCCCccccCcccChhhhHHHHhHhCCcccCCceeeeeeeehhHHhhcCcccccCCCcccHHHHHHHHhCCCeEEeCCC
Q 002515 240 INELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPVIEVPTN 319 (913)
Q Consensus 240 VD~~TGR~~~gr~ws~GLHQaieaKEgv~i~~e~~t~a~IT~q~~F~~Y~kL~GmTGTa~te~~Ef~~iY~l~vv~IPt~ 319 (913)
||++|||+|+||+||+|||||||||||++|+++|+|+|+||||||||+|++++||||||.+++.||.++||++|++||||
T Consensus 316 vD~ftGR~m~gRr~s~GLhQAiEAKEgv~i~~e~~tlatITfQn~fR~y~kl~gmTGTa~te~~EF~~iY~l~vv~iPTn 395 (822)
T COG0653 316 VDEFTGRMMEGRRWSDGLHQAIEAKEGVEIQEENQTLATITFQNLFRLYPKLAGMTGTADTEEEEFDVIYGLDVVVIPTN 395 (822)
T ss_pred EecccCCcccCcCCCchhHHHHHHhcCCcccccceeehhhhHHHHHhhhhhhcCCCCcchhhhhhhhhccCCceeeccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccCCCeEEeChhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEeccCCcchhhHHHHHHh
Q 002515 320 LPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQ 399 (913)
Q Consensus 320 ~p~~R~d~~d~v~~t~~~k~~aii~ei~~~~~~grPVLI~t~Si~~SE~ls~~L~~~gi~~~vLnA~~k~~~~Ea~Iia~ 399 (913)
+|++|+|+||.+|.|..+||.|++++|..+|.+||||||||.||+.||.+|++|++.||||+|||| |||++||+||++
T Consensus 396 rp~~R~D~~D~vy~t~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNA--k~h~~EA~Iia~ 473 (822)
T COG0653 396 RPIIRLDEPDLVYKTEEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNA--KNHAREAEIIAQ 473 (822)
T ss_pred CcccCCCCccccccchHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcCCCceeecc--ccHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999999999999999999 699999999999
Q ss_pred cCCCccEEEEcCCCCCCcceecCCChhHHHHHHHHHHHHHHHhhhhcccccccCCCCcchhhhhhhcchhHHHHHHHHHH
Q 002515 400 AGRKYAITISTNMAGRGTDIILGGNPKMLAKKIIEDRLLLLLTREALNVEVDDKTSSPKVLSEIKLGSSSLALLAKAALL 479 (913)
Q Consensus 400 AG~~G~VTIATnmAGRGTDIkLgg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (913)
||++|+||||||||||||||+|||||+
T Consensus 474 AG~~gaVTiATNMAGRGTDIkLg~~~~----------------------------------------------------- 500 (822)
T COG0653 474 AGQPGAVTIATNMAGRGTDIKLGGNPE----------------------------------------------------- 500 (822)
T ss_pred cCCCCccccccccccCCcccccCCCHH-----------------------------------------------------
Confidence 999999999999999999999998652
Q ss_pred HhhhccccCCchhhhhhhhhhhhhhhhhhhhhHHHHHHHHhhhccCCCCChhhHHHHHHHhhhhhhcccccchhhhhcCc
Q 002515 480 AKYVGKAEGKSWTYQEAKSFFSESVEMSQSMNLKELQKLIDKQSAMYPLGPTVALTYLSVLKDCEVHCSNEGSEVKRLGG 559 (913)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GG 559 (913)
.|.++||
T Consensus 501 -------------------------------------------------------------------------~V~~lGG 507 (822)
T COG0653 501 -------------------------------------------------------------------------FVMELGG 507 (822)
T ss_pred -------------------------------------------------------------------------HHHHhCC
Confidence 5889999
Q ss_pred eEEEeccCCCchhhHhhhhcccccCCCCCceeEEEeccchhhhhccCCchHHHHHHhhcCCCCCCCccchHHHHHHHHHH
Q 002515 560 LHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDTSWAVDLISRITNDEDMPIEGDAIVRQLLGLQ 639 (913)
Q Consensus 560 L~VIgTerhes~RiD~QLrGRagRQGdpGss~f~lSLeD~l~~~f~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~aQ 639 (913)
|||||||||||||||||||||||||||||+|+||+||||+||++|| ++++..+|.++++.+++||+|++++++|++||
T Consensus 508 L~VIgTERhESRRIDnQLRGRsGRQGDpG~S~F~lSleD~L~r~F~--~d~~~~~~~~l~~~~~e~i~~~~~~~~ie~aQ 585 (822)
T COG0653 508 LHVIGTERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDDLMRRFA--SDRLPALMDKLGLKEGEAIESKMVTRAVERAQ 585 (822)
T ss_pred cEEEecccchhhHHHHHhhcccccCCCcchhhhhhhhHHHHHHHhc--chhhHHHHHhhcCCccCccccHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHH
Q 002515 640 ISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSILTGANESCSQQIFQYMQAVVDEIIFGNVDPLKHPRYWSLDKLLKE 719 (913)
Q Consensus 640 ~~~E~~~~~~Rk~l~~yd~v~~~QR~~IY~~R~~iL~~~~~~~~~~i~~~~~~~v~~iv~~~~~~~~~~~~~~~~~l~~~ 719 (913)
++||++||++||++++||+|||.||++||++|+++|++ .++.+.+..|++++++.+|..+.+.....+.|+++.|..+
T Consensus 586 k~vE~~n~d~rk~ll~yddv~~~QR~~IY~~R~~~l~~--~dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~~~l~~~ 663 (822)
T COG0653 586 RKVEGRNFDIRKQLLEYDDVLNDQRKVIYAQRNRLLEA--LDLSEFISKMIEDVIKALVGEYIPPPQQAELWDLEGLIDE 663 (822)
T ss_pred HHHHhcCCcHHhhHHHHhHHHHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHHHhcccCCchhhhhhhhHHHHHHH
Confidence 99999999999999999999999999999999999965 5899999999999999999999988887899999999887
Q ss_pred HHHHhccchhhhhccCCccchhhhhhcccccccccccCCCCCCCCCCCccccccccccchhhhhhhhccccccccccccc
Q 002515 720 FIAIAGKILDDLFAGISGDTLLKSIEELPELNSIDINNFYFPDLPKPPNLFRGIRRKSSSLKRWLAICSDDLTKNGRYRA 799 (913)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~d~~~~~~~~~~ 799 (913)
+...+....+ +..|... ..
T Consensus 664 l~~~~~~~~~--------------------------------------------------~~~~~~~-----------~~ 682 (822)
T COG0653 664 LKGTVHPDLP--------------------------------------------------INKSDLE-----------DE 682 (822)
T ss_pred HhhhcCccch--------------------------------------------------hHHHhhh-----------cc
Confidence 6543211000 0011110 11
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhcccccCCCcHHHHHHHHH
Q 002515 800 TTNLLRKYLGDILIASYLNVVQESRYDDVYMKEVERAVLVKTLDCFWRDHLINMNRLSSAVNVRSFGHRNPLEEYKIDGC 879 (913)
Q Consensus 800 ~~~~~~~~l~e~~~~~y~~k~~~~~~~~~~~~~~eR~ilLk~ID~~W~eHLd~Md~LRegI~LRsYgQKDPl~EYkkEaf 879 (913)
..+++++.+.+.+.+.|..+++ .+++.++.|+|.+||++||..|++||+.|++||++||||+|||+||++|||+|||
T Consensus 683 ~~~~l~e~i~~~~~~~~~~k~~---~~~~~~~~~~r~v~l~~iD~~W~ehl~~md~Lr~~I~lR~y~qk~Pl~eyk~e~~ 759 (822)
T COG0653 683 AEEELAERILKAADEAYDKKEE---VGPEAMREFERYVMLQVLDYLWREHLDAMDALREGIHLRGYAQKDPLIEYKREAF 759 (822)
T ss_pred cHHHHHHHHHHHHHHHHHhhhc---cCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhHHhccCChHHHHHHHHH
Confidence 3467888888888899866533 7889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhHhcccCc
Q 002515 880 RFFISMLSATRRLTVESLVQYWSSP 904 (913)
Q Consensus 880 ~lF~~M~~~I~~~~v~~l~~~~~~~ 904 (913)
++|++|+.+|+.++++.++.+++..
T Consensus 760 ~~Fe~m~~~i~~~~~~~l~~~~~~~ 784 (822)
T COG0653 760 ELFEDMLEDIKEDVVKRLFKVQVAE 784 (822)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccc
Confidence 9999999999999999999987755
No 12
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=5e-197 Score=1731.34 Aligned_cols=700 Identities=45% Similarity=0.733 Sum_probs=660.0
Q ss_pred CCCchhHHHHHHHHhcCCeEEecCCCchHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCC
Q 002515 1 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRG 80 (913)
Q Consensus 1 ~rp~dvQl~g~l~L~~G~IaEm~TGEGKTLva~lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLsv~~i~~~ 80 (913)
|||||||++||++||+|+||||+||||||||++||+|++||.|++|||||||+|||+||++||+|+|++|||+|++++++
T Consensus 79 ~~~~dvQlig~l~l~~G~iaEm~TGEGKTLvA~l~a~l~al~G~~v~vvT~neyLA~Rd~e~~~~~~~~LGl~vg~i~~~ 158 (796)
T PRK12906 79 LRPFDVQIIGGIVLHEGNIAEMKTGEGKTLTATLPVYLNALTGKGVHVVTVNEYLSSRDATEMGELYRWLGLTVGLNLNS 158 (796)
T ss_pred CCCchhHHHHHHHHhcCCcccccCCCCCcHHHHHHHHHHHHcCCCeEEEeccHHHHHhhHHHHHHHHHhcCCeEEEeCCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHhccCCCeEEECCCcchhhHHHHhhccchhhhhccCCCCceEEEeecchhhhhccCCCceeccCCCCCCccchH
Q 002515 81 MIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYP 160 (913)
Q Consensus 81 ~~~~~r~~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~tPLiiSg~~~~~~~~y~ 160 (913)
+++++|+.+|.||||||||++||||||||||+.++++.|+| +++|||||||||||||+|+||||||||.+...+.|.
T Consensus 159 ~~~~~r~~~y~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r---~~~~aIvDEvDSiLiDeartPLiisg~~~~~~~~y~ 235 (796)
T PRK12906 159 MSPDEKRAAYNCDITYSTNSELGFDYLRDNMVVYKEQMVQR---PLNYAIVDEVDSILIDEARTPLIISGQAEKATDLYI 235 (796)
T ss_pred CCHHHHHHHhcCCCeecCCccccccchhhccccchhhhhcc---CcceeeeccchheeeccCCCceecCCCCCcchHHHH
Confidence 99999999999999999999999999999999998899998 999999999999999999999999999998889999
Q ss_pred HHHHHHHHhccCC-----------CeEEeCCCCeeeccHhhHHHHHHHhccCCCCCCCC-cHHHHHHHHHHHHHhhccCc
Q 002515 161 VAAKVAELLVQGL-----------HYTVELKNNSVELTEEGIALAEMALETNDLWDEND-PWARFVMNALKAKEFYRRDV 228 (913)
Q Consensus 161 ~~~~~v~~l~~~~-----------~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~-~l~~~i~~Al~A~~l~~~d~ 228 (913)
.+++++..|.++. ||.+|++.++++||++|+.++|.++++.++|+..+ .|.+||.+||+|+++|++|+
T Consensus 236 ~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~k~v~lte~G~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~l~~~d~ 315 (796)
T PRK12906 236 RADRFVKTLIKDEAEDGDDDEDTGDYKIDEKTKTISLTEQGIRKAEKLFGLDNLYDSENTALAHHIDQALRANYIMLKDI 315 (796)
T ss_pred HHHHHHHHHHhhhhccccccCCCCceEEEcccCceeecHHHHHHHHHHcCCccccCchhhhHHHHHHHHHHHHHHHhcCC
Confidence 9999999998764 99999999999999999999999999999999765 68999999999999999999
Q ss_pred ceEEECCeEEEEeCCCCccccCcccChhhhHHHHhHhCCcccCCceeeeeeeehhHHhhcCcccccCCCcccHHHHHHHH
Q 002515 229 QYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKM 308 (913)
Q Consensus 229 dYiV~dg~V~iVD~~TGR~~~gr~ws~GLHQaieaKEgv~i~~e~~t~a~IT~q~~F~~Y~kL~GmTGTa~te~~Ef~~i 308 (913)
||||+||+|+|||++|||+|+||+||+||||||||||||+|+|+++|+|+|||||||++|++|+||||||++++.||+++
T Consensus 316 dYiV~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t~a~It~qnfFr~Y~kl~GmTGTa~~e~~Ef~~i 395 (796)
T PRK12906 316 DYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRMYKKLSGMTGTAKTEEEEFREI 395 (796)
T ss_pred cEEEECCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCCceeeeeehHHHHHHhcchhhccCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEeccCCc
Q 002515 309 FQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPK 388 (913)
Q Consensus 309 Y~l~vv~IPt~~p~~R~d~~d~v~~t~~~k~~aii~ei~~~~~~grPVLI~t~Si~~SE~ls~~L~~~gi~~~vLnA~~k 388 (913)
||++|++||||+|++|+|+||.||.|..+||.+|++++.++|++||||||||+|++.||.||+.|.+.|+||++||| +
T Consensus 396 Y~l~vv~IPtnkp~~r~d~~d~i~~t~~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~~L~~~gi~~~~Lna--~ 473 (796)
T PRK12906 396 YNMEVITIPTNRPVIRKDSPDLLYPTLDSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHLLDEAGIPHAVLNA--K 473 (796)
T ss_pred hCCCEEEcCCCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHCCCCeeEecC--C
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999 5
Q ss_pred chhhHHHHHHhcCCCccEEEEcCCCCCCcceecCCChhHHHHHHHHHHHHHHHhhhhcccccccCCCCcchhhhhhhcch
Q 002515 389 YAAREAETVAQAGRKYAITISTNMAGRGTDIILGGNPKMLAKKIIEDRLLLLLTREALNVEVDDKTSSPKVLSEIKLGSS 468 (913)
Q Consensus 389 ~~~~Ea~Iia~AG~~G~VTIATnmAGRGTDIkLgg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (913)
++++|++||++||++|+||||||||||||||+||
T Consensus 474 ~~~~Ea~ii~~ag~~g~VtIATnmAGRGtDI~l~---------------------------------------------- 507 (796)
T PRK12906 474 NHAKEAEIIMNAGQRGAVTIATNMAGRGTDIKLG---------------------------------------------- 507 (796)
T ss_pred cHHHHHHHHHhcCCCceEEEEeccccCCCCCCCC----------------------------------------------
Confidence 7899999999999999999999999999999998
Q ss_pred hHHHHHHHHHHHhhhccccCCchhhhhhhhhhhhhhhhhhhhhHHHHHHHHhhhccCCCCChhhHHHHHHHhhhhhhccc
Q 002515 469 SLALLAKAALLAKYVGKAEGKSWTYQEAKSFFSESVEMSQSMNLKELQKLIDKQSAMYPLGPTVALTYLSVLKDCEVHCS 548 (913)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 548 (913)
T Consensus 508 -------------------------------------------------------------------------------- 507 (796)
T PRK12906 508 -------------------------------------------------------------------------------- 507 (796)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccchhhhhcCceEEEeccCCCchhhHhhhhcccccCCCCCceeEEEeccchhhhhccCCchHHHHHHhhcCC-CCCCCcc
Q 002515 549 NEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDTSWAVDLISRITN-DEDMPIE 627 (913)
Q Consensus 549 ~~~~~V~~~GGL~VIgTerhes~RiD~QLrGRagRQGdpGss~f~lSLeD~l~~~f~~~~~~~~~~~~~~~~-~~~~~i~ 627 (913)
++|.++||||||||+||||+|||+||+||||||||||+|+||+||||+||+.|| ++++.++|.++++ ++++||+
T Consensus 508 ---~~V~~~GGLhVI~te~pes~ri~~Ql~GRtGRqG~~G~s~~~~sleD~l~~~f~--~~~~~~~~~~~~~~~~~~~i~ 582 (796)
T PRK12906 508 ---PGVKELGGLAVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDDLMRRFG--SDRVKAFLDRLGMNDDDQVIE 582 (796)
T ss_pred ---cchhhhCCcEEEeeecCCcHHHHHHHhhhhccCCCCcceEEEEeccchHHHhhC--cHHHHHHHHHcCCCCCCCccc
Confidence 368899999999999999999999999999999999999999999999999999 9999999999999 8899999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 002515 628 GDAIVRQLLGLQISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSILTGANESCSQQIFQYMQAVVDEIIFGNVDPLKH 707 (913)
Q Consensus 628 ~~~~~~~i~~aQ~~~E~~~~~~Rk~l~~yd~v~~~QR~~IY~~R~~iL~~~~~~~~~~i~~~~~~~v~~iv~~~~~~~~~ 707 (913)
+++++++|++||+++|++||++||++++||+|||.||++||++|++||+++ +++.+.|.+|++++++++++.+.++.
T Consensus 583 ~~~~~~~i~~aQ~~~e~~~~~~Rk~l~~~d~v~~~QR~~iY~~R~~il~~~-~~l~~~i~~~~~~~i~~~i~~~~~~~-- 659 (796)
T PRK12906 583 SRMITRQVESAQKRVEGNNYDTRKQLLQYDDVMREQREVIYKQRMQVINED-KDLKEVLMPMIKRTVDRQVQMYTQGD-- 659 (796)
T ss_pred chHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-ccHHHHHHHHHHHHHHHHHHHhcCCC--
Confidence 999999999999999999999999999999999999999999999999652 47999999999999999999887544
Q ss_pred CCcCCHHHHHHHHHHHhccchhhhhccCCccchhhhhhcccccccccccCCCCCCCCCCCccccccccccchhhhhhhhc
Q 002515 708 PRYWSLDKLLKEFIAIAGKILDDLFAGISGDTLLKSIEELPELNSIDINNFYFPDLPKPPNLFRGIRRKSSSLKRWLAIC 787 (913)
Q Consensus 708 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 787 (913)
+++|++++|...+...++.. . .++++ .
T Consensus 660 ~~~w~~~~L~~~l~~~~~~~--~---~~~~~------------------------------~------------------ 686 (796)
T PRK12906 660 KKDWDLDALRDFIVSAMPDE--E---TFDFE------------------------------D------------------ 686 (796)
T ss_pred hhhccHHHHHHHHHHHcCcc--c---CCCHH------------------------------H------------------
Confidence 67899999987765332100 0 00000 0
Q ss_pred ccccccccccccchHHHHHHHHHHHHHHHHHHHHhhcCC-HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhccccc
Q 002515 788 SDDLTKNGRYRATTNLLRKYLGDILIASYLNVVQESRYD-DVYMKEVERAVLVKTLDCFWRDHLINMNRLSSAVNVRSFG 866 (913)
Q Consensus 788 ~d~~~~~~~~~~~~~~~~~~l~e~~~~~y~~k~~~~~~~-~~~~~~~eR~ilLk~ID~~W~eHLd~Md~LRegI~LRsYg 866 (913)
..+...+++++++.+.+.+.|..|++ .++ ++.++++||.+||++||.+|++||++|++||+|||||+||
T Consensus 687 --------~~~~~~eel~~~L~~~~~~~Y~~K~~--~lg~~e~~~~~eR~i~L~~ID~~W~eHL~~md~LRegI~LR~yg 756 (796)
T PRK12906 687 --------LKGKSPEELKKRLLDIVEDNYAEKEK--QLGDPTQMLEFEKVVILRVVDSHWTDHIDAMDQLRQSIGLRGYG 756 (796)
T ss_pred --------HccCCHHHHHHHHHHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 00123467889999999999976643 456 7899999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhHhccc
Q 002515 867 HRNPLEEYKIDGCRFFISMLSATRRLTVESLVQYWS 902 (913)
Q Consensus 867 QKDPl~EYkkEaf~lF~~M~~~I~~~~v~~l~~~~~ 902 (913)
||||+.|||+|||++|+.|+.+|+.+++++||+++.
T Consensus 757 QkDPl~EYk~Ea~~lF~~m~~~i~~~iv~~~~~~~~ 792 (796)
T PRK12906 757 QLNPLVEYQEEGYRMFEEMISNIDYDVTRLFMKAQI 792 (796)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999999998874
No 13
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=4.1e-190 Score=1674.83 Aligned_cols=703 Identities=39% Similarity=0.596 Sum_probs=645.9
Q ss_pred CCCchhHHHHHHHHhcCCeEEecCCCchHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCC
Q 002515 1 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRG 80 (913)
Q Consensus 1 ~rp~dvQl~g~l~L~~G~IaEm~TGEGKTLva~lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLsv~~i~~~ 80 (913)
|+||+||++|++++++|.||||+||||||++|+||+++++|.|++|||||||+|||.||++||+++|+++|++|++++++
T Consensus 93 ~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~g~~v~IVTpTrELA~Qdae~m~~L~k~lGLsV~~i~GG 172 (970)
T PRK12899 93 MVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALTGKPVHLVTVNDYLAQRDCEWVGSVLRWLGLTTGVLVSG 172 (970)
T ss_pred CChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhhcCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHhccCCCeEEECCCcchhhHHHHh-hccchhhhhccCCCCceEEEeecchhhhhccCCCceeccCCCCCCccch
Q 002515 81 MIPEERRSNYRCDITYTNNSELGFDYLRDN-LAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARY 159 (913)
Q Consensus 81 ~~~~~r~~aY~~DI~YgT~~e~~fDyLrD~-l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~tPLiiSg~~~~~~~~y 159 (913)
++.++++.+|.|||+||||++||||||+|+ |..+..+.||| +++|+||||||||||||||||||||||.+..++.|
T Consensus 173 ~~~~eq~~~y~~DIVygTPgRLgfDyLrd~~~~~~~~~~vqr---~~~~~IIDEADsmLiDEArTPLIISg~~~~~~~~Y 249 (970)
T PRK12899 173 SPLEKRKEIYQCDVVYGTASEFGFDYLRDNSIATRKEEQVGR---GFYFAIIDEVDSILIDEARTPLIISGPGEKHNPVY 249 (970)
T ss_pred CCHHHHHHHcCCCEEEECCChhHHHHhhCCCCCcCHHHhhcc---cccEEEEechhhhhhhccCCceeeeCCCccccHHH
Confidence 999999999999999999999999999999 77777788998 99999999999999999999999999999998888
Q ss_pred HHHHHHHHHh-------------------------------------------------------------cc-------
Q 002515 160 PVAAKVAELL-------------------------------------------------------------VQ------- 171 (913)
Q Consensus 160 ~~~~~~v~~l-------------------------------------------------------------~~------- 171 (913)
..++.+|..| .+
T Consensus 250 ~~~~~~V~~l~~~q~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~~~ 329 (970)
T PRK12899 250 FELKDKVAELVYLQRELCNRIALEARKVLDPFLDTDILPKDKKVMEGISEACRSLWLVSKGMPLNRVLRRVREHPDLRAM 329 (970)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchhhhhhhhhhhhhccccchhhhhhhhcccchhhh
Confidence 8877555544 11
Q ss_pred ----------------------CCCeEEeCCCCeeeccHhhHHHH--------HHHh---------ccC--CCCCC----
Q 002515 172 ----------------------GLHYTVELKNNSVELTEEGIALA--------EMAL---------ETN--DLWDE---- 206 (913)
Q Consensus 172 ----------------------~~~y~~d~~~k~v~Lt~~G~~~~--------e~~~---------~~~--~L~~~---- 206 (913)
+.||.+|++.++++||++|+.++ |.++ +++ +++++
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~y~vde~~~~v~LTe~G~~~~~~~~~~~~e~~~~~~~~~~~~~i~~~~~l~~~~~~ 409 (970)
T PRK12899 330 IDKWDVYYHAEQNKEESLEKLSELYIIVDEHNNDFELTDKGMQQWVEKAGGSAEDFVMMDMGHEYALIEEDETLSPADKI 409 (970)
T ss_pred hhhhhhhhhhhhhhhhccccccCCceEEecCCCeeeechhhHHHHhhhccCCHHHHhccchhhhhhccccccccCHHHhh
Confidence 23899999999999999999885 7776 552 43432
Q ss_pred ------------CCcHHHHHHHHHHHHHhhccCcceEEECCeEEEEeCCCCccccCcccChhhhHHHHhHhCCcccCCce
Q 002515 207 ------------NDPWARFVMNALKAKEFYRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSV 274 (913)
Q Consensus 207 ------------~~~l~~~i~~Al~A~~l~~~d~dYiV~dg~V~iVD~~TGR~~~gr~ws~GLHQaieaKEgv~i~~e~~ 274 (913)
+..+.|+|++||+|+++|++|+||||+||+|+|||++|||+|+||+||+||||||||||||+|+++++
T Consensus 410 ~~k~~~~~~~~~~~~~~~~i~~aL~A~~lf~rd~dYiV~dg~V~IVDe~TGR~~~gr~~s~GLhQaiEaKE~v~i~~e~~ 489 (970)
T PRK12899 410 NRKIAISEEDTQRKARAHGLRQLLRAHLLMEKDVDYIVRDDQIVIIDEHTGRPQPGRRFSEGLHQAIEAKEHVTIRKESQ 489 (970)
T ss_pred hhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEeCCCCccCCCCCcchHHHHHHHhhcCCCCCCCce
Confidence 22588999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeeeehhHHhhcCcccccCCCcccHHHHHHHHhCCCeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHHHhcCC
Q 002515 275 VVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGR 354 (913)
Q Consensus 275 t~a~IT~q~~F~~Y~kL~GmTGTa~te~~Ef~~iY~l~vv~IPt~~p~~R~d~~d~v~~t~~~k~~aii~ei~~~~~~gr 354 (913)
|+|+|||||||++|++|+||||||++++.||+++||++|++||||+|++|+|+||.||.|..+||.||+++|.++|++||
T Consensus 490 t~a~It~qnfFr~Y~kl~GmTGTa~~e~~Ef~~iY~l~v~~iPt~kp~~r~d~~d~iy~t~~~k~~ai~~ei~~~~~~gr 569 (970)
T PRK12899 490 TFATVTLQNFFRLYEKLAGMTGTAITESREFKEIYNLYVLQVPTFKPCLRIDHNDEFYMTEREKYHAIVAEIASIHRKGN 569 (970)
T ss_pred eeeeehHHHHHhhCchhcccCCCCHHHHHHHHHHhCCCEEECCCCCCceeeeCCCcEecCHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEecchhhHHHHHHHHHHCCCCeEEeccCCcchhhHHHHHHhcCCCccEEEEcCCCCCCcceecCCChhHHHHHHHH
Q 002515 355 PVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQAGRKYAITISTNMAGRGTDIILGGNPKMLAKKIIE 434 (913)
Q Consensus 355 PVLI~t~Si~~SE~ls~~L~~~gi~~~vLnA~~k~~~~Ea~Iia~AG~~G~VTIATnmAGRGTDIkLgg~~~~~~~~~~~ 434 (913)
||||||.||+.||.||.+|.+.||+|+|||| +++++||+||++||++|+||||||||||||||+||
T Consensus 570 PvLigt~si~~se~ls~~L~~~gi~h~vLNa--k~~~~Ea~iia~AG~~g~VTIATNmAGRGTDIkl~------------ 635 (970)
T PRK12899 570 PILIGTESVEVSEKLSRILRQNRIEHTVLNA--KNHAQEAEIIAGAGKLGAVTVATNMAGRGTDIKLD------------ 635 (970)
T ss_pred CEEEEeCcHHHHHHHHHHHHHcCCcceeccc--chhhhHHHHHHhcCCCCcEEEeeccccCCcccccC------------
Confidence 9999999999999999999999999999999 58999999999999999999999999999999998
Q ss_pred HHHHHHHhhhhcccccccCCCCcchhhhhhhcchhHHHHHHHHHHHhhhccccCCchhhhhhhhhhhhhhhhhhhhhHHH
Q 002515 435 DRLLLLLTREALNVEVDDKTSSPKVLSEIKLGSSSLALLAKAALLAKYVGKAEGKSWTYQEAKSFFSESVEMSQSMNLKE 514 (913)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 (913)
T Consensus 636 -------------------------------------------------------------------------------- 635 (970)
T PRK12899 636 -------------------------------------------------------------------------------- 635 (970)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhhhccCCCCChhhHHHHHHHhhhhhhcccccchhhhhcCceEEEeccCCCchhhHhhhhcccccCCCCCceeEEE
Q 002515 515 LQKLIDKQSAMYPLGPTVALTYLSVLKDCEVHCSNEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMV 594 (913)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerhes~RiD~QLrGRagRQGdpGss~f~l 594 (913)
++|+++|||||||||||||+|||||||||||||||||||+|||
T Consensus 636 -------------------------------------~~v~~~GGLhVIgTer~es~Rid~Ql~GRagRQGdpGss~f~l 678 (970)
T PRK12899 636 -------------------------------------EEAVAVGGLYVIGTSRHQSRRIDRQLRGRCARLGDPGAAKFFL 678 (970)
T ss_pred -------------------------------------chHHhcCCcEEEeeccCchHHHHHHHhcccccCCCCCceeEEE
Confidence 3788999999999999999999999999999999999999999
Q ss_pred eccchhhhhccCCchHHHHHHhhcCCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 002515 595 SLQDEMFQKFSFDTSWAVDLISRITNDEDMPIEGDAIVRQLLGLQISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSI 674 (913)
Q Consensus 595 SLeD~l~~~f~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~aQ~~~E~~~~~~Rk~l~~yd~v~~~QR~~IY~~R~~i 674 (913)
|||||||+.|| ++++.++|+++++++++||++++++++|++||++||++||++||++++||+|||.||++||++|++|
T Consensus 679 SlEDdL~~~f~--~~~i~~~~~~~~~~~~~~I~~~~~~~~i~~aQk~vE~~~~~~Rk~ll~yD~Vln~QR~vIY~~R~~i 756 (970)
T PRK12899 679 SFEDRLMRLFA--SPKLNTLIRHFRPPEGEAMSDPMFNRLIETAQKRVEGRNYTIRKHTLEYDDVMNKQRQTIYAFRNDV 756 (970)
T ss_pred EcchHHHHHhC--cHHHHHHHHHcCCCCCCccccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCHHHHHHHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHhccchhhhhccCCccchhhhhhccccccccc
Q 002515 675 LTGANESCSQQIFQYMQAVVDEIIFGNVDPLKHPRYWSLDKLLKEFIAIAGKILDDLFAGISGDTLLKSIEELPELNSID 754 (913)
Q Consensus 675 L~~~~~~~~~~i~~~~~~~v~~iv~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 754 (913)
|++ +++.+.|.+|++++++++++.+..+. .+++|++++|...+...++. .++++
T Consensus 757 L~~--~~~~~~i~~~~~~~i~~~v~~~~~~~-~~~~~~~~~L~~~l~~~~~~-------~~~~~---------------- 810 (970)
T PRK12899 757 LHA--EDIFVVAKEIIEHVALMLASLILKDR-HADGCSLPKLEEWLSYSFPV-------KLDDQ---------------- 810 (970)
T ss_pred HcC--CcHHHHHHHHHHHHHHHHHHHhcCcc-chhhccHHHHHHHHHHhcCC-------CCCHH----------------
Confidence 954 47999999999999999999887654 36779999988766432110 00000
Q ss_pred ccCCCCCCCCCCCccccccccccchhhhhhhhcccccccccccccchHHHHHHHHHHHHHHHHHHHHhhc----------
Q 002515 755 INNFYFPDLPKPPNLFRGIRRKSSSLKRWLAICSDDLTKNGRYRATTNLLRKYLGDILIASYLNVVQESR---------- 824 (913)
Q Consensus 755 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~d~~~~~~~~~~~~~~~~~~l~e~~~~~y~~k~~~~~---------- 824 (913)
.+. ...+.+++++++.+.+.+.|..|.....
T Consensus 811 --------------~~~-------------------------~~~~~e~l~~~l~~~~~~~y~~k~~~l~~~~~~~~~~~ 851 (970)
T PRK12899 811 --------------ELR-------------------------RLGDTDAIAEKIADLLIEAFQVKFSSMVAEFTEAIGEA 851 (970)
T ss_pred --------------HHh-------------------------ccCCHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCcc
Confidence 000 0013467888999999999976654320
Q ss_pred -CCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhcccccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccC
Q 002515 825 -YDDVYMKEVERAVLVKTLDCFWRDHLINMNRLSSAVNVRSFGHRNPLEEYKIDGCRFFISMLSATRRLTVESLVQYWSS 903 (913)
Q Consensus 825 -~~~~~~~~~eR~ilLk~ID~~W~eHLd~Md~LRegI~LRsYgQKDPl~EYkkEaf~lF~~M~~~I~~~~v~~l~~~~~~ 903 (913)
.+++.++++||.++|++||.+|++||++|++||+|||||+||||||+.|||+|||++|+.|+.+|+.++++++|+++.+
T Consensus 852 ~~~~e~~~~~er~i~L~~ID~~W~eHL~~md~LRe~I~lR~ygQkdPl~EYk~Ea~~~F~~m~~~i~~~iv~~l~~~~i~ 931 (970)
T PRK12899 852 VDAQGICNDILRSVMIMHIDEQWKIHLVDMDLLRSEVGLRTVGQKDPLIEFKHESFLLFESLIRDIRIAIVKHLFRLELT 931 (970)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 0256899999999999999999999999999999999999999999999999999999999999999999999998855
Q ss_pred c
Q 002515 904 P 904 (913)
Q Consensus 904 ~ 904 (913)
-
T Consensus 932 ~ 932 (970)
T PRK12899 932 L 932 (970)
T ss_pred c
Confidence 3
No 14
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=100.00 E-value=5e-187 Score=1634.57 Aligned_cols=687 Identities=53% Similarity=0.834 Sum_probs=646.4
Q ss_pred CCCchhHHHHHHHHhcCCeEEecCCCchHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCC
Q 002515 1 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRG 80 (913)
Q Consensus 1 ~rp~dvQl~g~l~L~~G~IaEm~TGEGKTLva~lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLsv~~i~~~ 80 (913)
|||||||++|+++||+|+||||+|||||||+|+||+|++||.|++|||||||+|||+||++||++||++|||+|++++++
T Consensus 55 ~~p~~vQlig~~~l~~G~Iaem~TGeGKTLva~lpa~l~aL~G~~V~VvTpt~~LA~qdae~~~~l~~~LGLsv~~i~g~ 134 (745)
T TIGR00963 55 MRPFDVQLIGGIALHKGKIAEMKTGEGKTLTATLPAYLNALTGKGVHVVTVNDYLAQRDAEWMGQVYRFLGLSVGLILSG 134 (745)
T ss_pred CCccchHHhhhhhhcCCceeeecCCCccHHHHHHHHHHHHHhCCCEEEEcCCHHHHHHHHHHHHHHhccCCCeEEEEeCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHhccCCCeEEECCCcchhhHHHHhhccchhhhhccCCCCceEEEeecchhhhhccCCCceeccCCCCCCccchH
Q 002515 81 MIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYP 160 (913)
Q Consensus 81 ~~~~~r~~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~tPLiiSg~~~~~~~~y~ 160 (913)
+++++|+.+|.|||+||||++||||||||+|+...+..++| +++|||||||||||+|+|||||||||+.+.+..+|.
T Consensus 135 ~~~~~r~~~y~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r---~l~~aIIDEaDs~LIDeaRtpLiisg~~~~~~~ly~ 211 (745)
T TIGR00963 135 MSPEERREAYACDITYGTNNELGFDYLRDNMAHSKEEKVQR---PFHFAIIDEVDSILIDEARTPLIISGPAEKSTELYL 211 (745)
T ss_pred CCHHHHHHhcCCCEEEECCCchhhHHHhcccccchhhhhcc---ccceeEeecHHHHhHHhhhhHHhhcCCCCCchHHHH
Confidence 99999999999999999999999999999998887888888 999999999999999999999999999888888999
Q ss_pred HHHHHHHHhccCCCeEEeCCCCeeeccHhhHHHHHHHhccCCCCCCCC-cHHHHHHHHHHHHHhhccCcceEEECCeEEE
Q 002515 161 VAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDEND-PWARFVMNALKAKEFYRRDVQYIVRNGKALI 239 (913)
Q Consensus 161 ~~~~~v~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~-~l~~~i~~Al~A~~l~~~d~dYiV~dg~V~i 239 (913)
.+..+++.|.++.||.+|++.|+++||++|+.++|++++++++|+..+ .|.+||++||+|+++|++|+||||+||+|+|
T Consensus 212 ~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~i 291 (745)
T TIGR00963 212 QANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNALKAKELFEKDVDYIVRDGEVVI 291 (745)
T ss_pred HHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHHHHHHHHHhcCCcEEEECCEEEE
Confidence 999999999988999999999999999999999999999999999844 7999999999999999999999999999999
Q ss_pred EeCCCCccccCcccChhhhHHHHhHhCCcccCCceeeeeeeehhHHhhcCcccccCCCcccHHHHHHHHhCCCeEEeCCC
Q 002515 240 INELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPVIEVPTN 319 (913)
Q Consensus 240 VD~~TGR~~~gr~ws~GLHQaieaKEgv~i~~e~~t~a~IT~q~~F~~Y~kL~GmTGTa~te~~Ef~~iY~l~vv~IPt~ 319 (913)
||++|||+|+||+||+||||||||||||+|+++++|+|+|||||||++|++|+||||||++++.||+++||++|++||||
T Consensus 292 vD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY~l~vv~IPtn 371 (745)
T TIGR00963 292 VDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTEEEEFEKIYNLEVVVVPTN 371 (745)
T ss_pred EECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcHHHHHHHHHHhCCCEEEeCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccCCCeEEeChhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEeccCCcchhhHHHHHHh
Q 002515 320 LPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQ 399 (913)
Q Consensus 320 ~p~~R~d~~d~v~~t~~~k~~aii~ei~~~~~~grPVLI~t~Si~~SE~ls~~L~~~gi~~~vLnA~~k~~~~Ea~Iia~ 399 (913)
+|++|+|+||.||.|..+||.||+++|.++|++||||||||+|++.||.+++.|++.|+||++|||+ ++++|++|++.
T Consensus 372 kp~~R~d~~d~i~~t~~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~gi~~~~Lna~--q~~rEa~ii~~ 449 (745)
T TIGR00963 372 RPVIRKDLSDLVYKTEEEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAK--NHEREAEIIAQ 449 (745)
T ss_pred CCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEeeCC--hHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999999999994 89999999999
Q ss_pred cCCCccEEEEcCCCCCCcceecCCChhHHHHHHHHHHHHHHHhhhhcccccccCCCCcchhhhhhhcchhHHHHHHHHHH
Q 002515 400 AGRKYAITISTNMAGRGTDIILGGNPKMLAKKIIEDRLLLLLTREALNVEVDDKTSSPKVLSEIKLGSSSLALLAKAALL 479 (913)
Q Consensus 400 AG~~G~VTIATnmAGRGTDIkLgg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (913)
||++|+||||||||||||||+++
T Consensus 450 ag~~g~VtIATnmAgRGtDI~l~--------------------------------------------------------- 472 (745)
T TIGR00963 450 AGRKGAVTIATNMAGRGTDIKLE--------------------------------------------------------- 472 (745)
T ss_pred cCCCceEEEEeccccCCcCCCcc---------------------------------------------------------
Confidence 99999999999999999999874
Q ss_pred HhhhccccCCchhhhhhhhhhhhhhhhhhhhhHHHHHHHHhhhccCCCCChhhHHHHHHHhhhhhhcccccchhhhhcCc
Q 002515 480 AKYVGKAEGKSWTYQEAKSFFSESVEMSQSMNLKELQKLIDKQSAMYPLGPTVALTYLSVLKDCEVHCSNEGSEVKRLGG 559 (913)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GG 559 (913)
+|.++||
T Consensus 473 -------------------------------------------------------------------------~V~~~GG 479 (745)
T TIGR00963 473 -------------------------------------------------------------------------EVKELGG 479 (745)
T ss_pred -------------------------------------------------------------------------chhhcCC
Confidence 5788999
Q ss_pred eEEEeccCCCchhhHhhhhcccccCCCCCceeEEEeccchhhhhccCCchHHHHHHhhcCCCCCCCccchHHHHHHHHHH
Q 002515 560 LHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDTSWAVDLISRITNDEDMPIEGDAIVRQLLGLQ 639 (913)
Q Consensus 560 L~VIgTerhes~RiD~QLrGRagRQGdpGss~f~lSLeD~l~~~f~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~aQ 639 (913)
||||+|++|||+|+|+|++||||||||||+|+||+|+||+||+.|| ++++.++|+++++++++||++++++++|++||
T Consensus 480 l~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s~~~ls~eD~l~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~aQ 557 (745)
T TIGR00963 480 LYVIGTERHESRRIDNQLRGRSGRQGDPGSSRFFLSLEDNLMRIFG--GDRLEGLMRRLGLEDDEPIESKMVTRALESAQ 557 (745)
T ss_pred cEEEecCCCCcHHHHHHHhccccCCCCCcceEEEEeccHHHHHhhh--hHHHHHHHHHcCCCCCceeecHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHH
Q 002515 640 ISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSILTGANESCSQQIFQYMQAVVDEIIFGNVDPLKHPRYWSLDKLLKE 719 (913)
Q Consensus 640 ~~~E~~~~~~Rk~l~~yd~v~~~QR~~IY~~R~~iL~~~~~~~~~~i~~~~~~~v~~iv~~~~~~~~~~~~~~~~~l~~~ 719 (913)
+++|++||++||++++||+|||.||++||++|+++|++ +++.+.|.+|++++++++++.+.++...+++|++++|...
T Consensus 558 ~~~e~~~~~~Rk~~~~~d~v~~~QR~~iY~~R~~il~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~ 635 (745)
T TIGR00963 558 KRVEARNFDIRKQLLEYDDVLNKQREVIYAERRRILES--EDLSELILQMLESTLDEIVDAYINEQKPSEEWDLEGLIEK 635 (745)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHcc--CCHHHHHHHHHHHHHHHHHHHhcCCCCChhhcCHHHHHHH
Confidence 99999999999999999999999999999999999954 4799999999999999999998876666789999999877
Q ss_pred HHHHhccchhhhhccCCccchhhhhhcccccccccccCCCCCCCCCCCccccccccccchhhhhhhhccccccccccccc
Q 002515 720 FIAIAGKILDDLFAGISGDTLLKSIEELPELNSIDINNFYFPDLPKPPNLFRGIRRKSSSLKRWLAICSDDLTKNGRYRA 799 (913)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~d~~~~~~~~~~ 799 (913)
+...++.. ..+++ ..+ ...
T Consensus 636 ~~~~~~~~-----~~~~~------------------------------~~~--------------------------~~~ 654 (745)
T TIGR00963 636 LKTLFLLD-----GDLTP------------------------------EDL--------------------------ENL 654 (745)
T ss_pred HHHHhCcc-----CCCCH------------------------------HHH--------------------------cCC
Confidence 65432100 00000 000 011
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhcCCHH---HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhcccccCCCcHHHHHH
Q 002515 800 TTNLLRKYLGDILIASYLNVVQESRYDDV---YMKEVERAVLVKTLDCFWRDHLINMNRLSSAVNVRSFGHRNPLEEYKI 876 (913)
Q Consensus 800 ~~~~~~~~l~e~~~~~y~~k~~~~~~~~~---~~~~~eR~ilLk~ID~~W~eHLd~Md~LRegI~LRsYgQKDPl~EYkk 876 (913)
..+++++++.+.+.+.|..|.+ .++++ .+++|||.++|++||.+|++||++|++||+||+||+||||||+.|||+
T Consensus 655 ~~~~~~~~l~~~~~~~~~~k~~--~~~~~~~~~~~~~er~~~L~~iD~~W~~hl~~m~~Lr~~i~lr~y~q~dp~~ey~~ 732 (745)
T TIGR00963 655 TSEDLKELLLEKIRAAYDEKEA--ELESERPGLMREFERYVLLQSIDRKWKEHLDAMDLLREGIGLRSYGQKDPLIEYKN 732 (745)
T ss_pred CHHHHHHHHHHHHHHHHHHHHH--HhCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhccCChHHHHHH
Confidence 3467888999999999976643 45544 799999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 002515 877 DGCRFFISMLSAT 889 (913)
Q Consensus 877 Eaf~lF~~M~~~I 889 (913)
|||+||+.|+.+|
T Consensus 733 e~~~~F~~m~~~i 745 (745)
T TIGR00963 733 EGFNLFLEMLEDI 745 (745)
T ss_pred HHHHHHHHHHhhC
Confidence 9999999999864
No 15
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=8.7e-182 Score=1610.37 Aligned_cols=705 Identities=40% Similarity=0.652 Sum_probs=666.7
Q ss_pred CCCchhHHHHHHHHhcCCeEEecCCCchHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCC
Q 002515 1 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRG 80 (913)
Q Consensus 1 ~rp~dvQl~g~l~L~~G~IaEm~TGEGKTLva~lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLsv~~i~~~ 80 (913)
|+|||||++|+++||+|+||||+||||||++|+||++++||.|++|||||||+|||+||++||+++|++|||+|+++.++
T Consensus 77 ~~p~~vQl~~~~~l~~G~Iaem~TGeGKTL~a~lp~~l~al~G~~v~VvTpt~~LA~qd~e~~~~l~~~lGl~v~~i~g~ 156 (790)
T PRK09200 77 MRPYDVQLIGALVLHEGNIAEMQTGEGKTLTATMPLYLNALEGKGVHLITVNDYLAKRDAEEMGQVYEFLGLTVGLNFSD 156 (790)
T ss_pred CCCchHHHHhHHHHcCCceeeecCCCcchHHHHHHHHHHHHcCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC-HHHHHhccCCCeEEECCCcchhhHHHHhhccchhhhhccCCCCceEEEeecchhhhhccCCCceeccCCCCCCccch
Q 002515 81 MI-PEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARY 159 (913)
Q Consensus 81 ~~-~~~r~~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~tPLiiSg~~~~~~~~y 159 (913)
++ +++|+.+|+|||+||||++||||||||+|..++...++| +++|||||||||||||+|+|||||||+++.+++.|
T Consensus 157 ~~~~~~r~~~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r---~~~~~IvDEaDsiLiDea~tpliisg~~~~~~~~y 233 (790)
T PRK09200 157 IDDASEKKAIYEADIIYTTNSELGFDYLRDNLADSKEDKVQR---PLNYAIIDEIDSILLDEAQTPLIISGKPRVQSNLY 233 (790)
T ss_pred CCcHHHHHHhcCCCEEEECCccccchhHHhccccchhhhccc---ccceEEEeccccceeccCCCceeeeCCCccccHHH
Confidence 99 999999999999999999999999999999887778888 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCeEEeCCCCeeeccHhhHHHHHHHhccCCCCCCCC-cHHHHHHHHHHHHHhhccCcceEEECCeEE
Q 002515 160 PVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDEND-PWARFVMNALKAKEFYRRDVQYIVRNGKAL 238 (913)
Q Consensus 160 ~~~~~~v~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~-~l~~~i~~Al~A~~l~~~d~dYiV~dg~V~ 238 (913)
..++.++..|.++.||.+|++.++++||++|+.++|.++++.++|+..+ .+.+||++||+|+++|++|+||||+||+|+
T Consensus 234 ~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~~~~~d~dYiV~~~~v~ 313 (790)
T PRK09200 234 HIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILALRAHVLFKRDVDYIVYDGEIV 313 (790)
T ss_pred HHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChhhhHHHHHHHHHHHHHHHhhcCCcEEEECCEEE
Confidence 9999999999988899999999999999999999999999999998765 688999999999999999999999999999
Q ss_pred EEeCCCCccccCcccChhhhHHHHhHhCCcccCCceeeeeeeehhHHhhcCcccccCCCcccHHHHHHHHhCCCeEEeCC
Q 002515 239 IINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPVIEVPT 318 (913)
Q Consensus 239 iVD~~TGR~~~gr~ws~GLHQaieaKEgv~i~~e~~t~a~IT~q~~F~~Y~kL~GmTGTa~te~~Ef~~iY~l~vv~IPt 318 (913)
|||++|||+|+||+||+||||||||||||+|+++++|+|+|||||||++|++|+||||||+++++||+++||++|++|||
T Consensus 314 ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~t~~~e~~~~Y~l~v~~IPt 393 (790)
T PRK09200 314 LVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTEEKEFFEVYNMEVVQIPT 393 (790)
T ss_pred EEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCChHHHHHHHHHhCCcEEECCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccccCCCeEEeChhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEeccCCcchhhHHHHHH
Q 002515 319 NLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVA 398 (913)
Q Consensus 319 ~~p~~R~d~~d~v~~t~~~k~~aii~ei~~~~~~grPVLI~t~Si~~SE~ls~~L~~~gi~~~vLnA~~k~~~~Ea~Iia 398 (913)
|+|++|+|+||.||.+..+|+.++++++.+.|.+||||||||+|++.|+.++..|.+.|++|++|||+ ++++|+++++
T Consensus 394 ~kp~~r~d~~~~i~~~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~gi~~~~L~~~--~~~~e~~~i~ 471 (790)
T PRK09200 394 NRPIIRIDYPDKVFVTLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGIPHNLLNAK--NAAKEAQIIA 471 (790)
T ss_pred CCCcccccCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEecCC--ccHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999994 6789999999
Q ss_pred hcCCCccEEEEcCCCCCCcceecCCChhHHHHHHHHHHHHHHHhhhhcccccccCCCCcchhhhhhhcchhHHHHHHHHH
Q 002515 399 QAGRKYAITISTNMAGRGTDIILGGNPKMLAKKIIEDRLLLLLTREALNVEVDDKTSSPKVLSEIKLGSSSLALLAKAAL 478 (913)
Q Consensus 399 ~AG~~G~VTIATnmAGRGTDIkLgg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (913)
+||++|+||||||||||||||+||
T Consensus 472 ~ag~~g~VlIATdmAgRG~DI~l~-------------------------------------------------------- 495 (790)
T PRK09200 472 EAGQKGAVTVATNMAGRGTDIKLG-------------------------------------------------------- 495 (790)
T ss_pred HcCCCCeEEEEccchhcCcCCCcc--------------------------------------------------------
Confidence 999999999999999999999998
Q ss_pred HHhhhccccCCchhhhhhhhhhhhhhhhhhhhhHHHHHHHHhhhccCCCCChhhHHHHHHHhhhhhhcccccchhhhhcC
Q 002515 479 LAKYVGKAEGKSWTYQEAKSFFSESVEMSQSMNLKELQKLIDKQSAMYPLGPTVALTYLSVLKDCEVHCSNEGSEVKRLG 558 (913)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~G 558 (913)
++|.++|
T Consensus 496 -------------------------------------------------------------------------~~V~~~G 502 (790)
T PRK09200 496 -------------------------------------------------------------------------EGVHELG 502 (790)
T ss_pred -------------------------------------------------------------------------ccccccc
Confidence 4788999
Q ss_pred ceEEEeccCCCchhhHhhhhcccccCCCCCceeEEEeccchhhhhccCCchHHHHHHhhcCCCC---CCCccchHHHHHH
Q 002515 559 GLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDTSWAVDLISRITNDE---DMPIEGDAIVRQL 635 (913)
Q Consensus 559 GL~VIgTerhes~RiD~QLrGRagRQGdpGss~f~lSLeD~l~~~f~~~~~~~~~~~~~~~~~~---~~~i~~~~~~~~i 635 (913)
|||||+|++|+|+|+++|++|||||||+||+|+||+|+||+||+.|| ++++.+++.+++.++ ++||++++++++|
T Consensus 503 GL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s~~~is~eD~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 580 (790)
T PRK09200 503 GLAVIGTERMESRRVDLQLRGRSGRQGDPGSSQFFISLEDDLLKRFA--PEELEKLKKKLKTDAQRLTGLLFNRKVHKIV 580 (790)
T ss_pred CcEEEeccCCCCHHHHHHhhccccCCCCCeeEEEEEcchHHHHHhhc--cHHHHHHHHHcCCccccCCcccccHHHHHHH
Confidence 99999999999999999999999999999999999999999999999 999999999999887 8999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHhcCCCCCCCCcCCHHH
Q 002515 636 LGLQISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSILTGANESCSQQIFQYMQAVVDEIIFGNVDPLKHPRYWSLDK 715 (913)
Q Consensus 636 ~~aQ~~~E~~~~~~Rk~l~~yd~v~~~QR~~IY~~R~~iL~~~~~~~~~~i~~~~~~~v~~iv~~~~~~~~~~~~~~~~~ 715 (913)
++||+++|++||++||++++||++||.||++||++|++||.++..++.+.+.+|++++++.+++.+..+...+++|++++
T Consensus 581 ~~aQ~~~e~~~~~~R~~~~~~d~~~~~QR~~iy~~R~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 660 (790)
T PRK09200 581 VKAQRISEGAGYSAREYALELDDVINIQRDVVYKERNRLLEEDDRDLIDIVILMIDVYLEAVAEEYLLEKSLLEEWIYEN 660 (790)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHHHHHHHHHhcCCccChhhhcHHH
Confidence 99999999999999999999999999999999999999997765589999999999999999998876665578899999
Q ss_pred HHHHHHHHhccchhhhhccCCccchhhhhhcccccccccccCCCCCCCCCCCccccccccccchhhhhhhhccccccccc
Q 002515 716 LLKEFIAIAGKILDDLFAGISGDTLLKSIEELPELNSIDINNFYFPDLPKPPNLFRGIRRKSSSLKRWLAICSDDLTKNG 795 (913)
Q Consensus 716 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~d~~~~~~ 795 (913)
+...+...++. +..
T Consensus 661 ~~~~~~~~~~~-------------------------------~~~----------------------------------- 674 (790)
T PRK09200 661 LSFQLNEILSN-------------------------------TNF----------------------------------- 674 (790)
T ss_pred HHHHHHHHhcc-------------------------------ccc-----------------------------------
Confidence 87766432110 000
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHhhcCCHH-HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhcccccCCCcHHHH
Q 002515 796 RYRATTNLLRKYLGDILIASYLNVVQESRYDDV-YMKEVERAVLVKTLDCFWRDHLINMNRLSSAVNVRSFGHRNPLEEY 874 (913)
Q Consensus 796 ~~~~~~~~~~~~l~e~~~~~y~~k~~~~~~~~~-~~~~~eR~ilLk~ID~~W~eHLd~Md~LRegI~LRsYgQKDPl~EY 874 (913)
.+.+++++++.+.+.+.|..|++ .++++ .+++|||.++|++||.+|++||++|++||+|||||+||||||+.||
T Consensus 675 ---~~~~~~~~~l~~~~~~~y~~k~~--~lg~e~~~~e~eR~i~L~~ID~~W~eHLd~Md~LRegI~LRsYgQKDPL~EY 749 (790)
T PRK09200 675 ---PDKKEVVQFLLEEAEKQLKEKRN--KLPSATLYNQFLRKVALKAIDQNWVEQVDALQQLKEGIGLRQYGQRNPIREY 749 (790)
T ss_pred ---CCHHHHHHHHHHHHHHHHHHHHH--HcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCHHHHH
Confidence 02246778888889999976533 34544 8999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhcccCccccccccc
Q 002515 875 KIDGCRFFISMLSATRRLTVESLVQYWSSPMESQELFL 912 (913)
Q Consensus 875 kkEaf~lF~~M~~~I~~~~v~~l~~~~~~~~~~~~~~~ 912 (913)
|+|||+||+.|+.+|+++++++||+.+.+..+.+|++.
T Consensus 750 kkEa~~lFe~M~~~I~~~~v~~l~~~~~~~~~~~e~~~ 787 (790)
T PRK09200 750 QKEALESFEYMYENIKKDMVRNLLLSLLVFDKEGEIVI 787 (790)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcEeccCCCCceee
Confidence 99999999999999999999999999999999998864
No 16
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=100.00 E-value=5.8e-179 Score=1574.23 Aligned_cols=682 Identities=38% Similarity=0.602 Sum_probs=631.6
Q ss_pred CCCchhHHHHHHHHhcCCeEEecCCCchHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCC
Q 002515 1 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRG 80 (913)
Q Consensus 1 ~rp~dvQl~g~l~L~~G~IaEm~TGEGKTLva~lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLsv~~i~~~ 80 (913)
|||||||++|++++|+|.|+||+|||||||+|++|+++++|.|++|||||||+|||+||++||++||++||++|++++++
T Consensus 69 lrpydVQlig~l~l~~G~Iaem~TGeGKTLta~Lpa~l~aL~g~~V~VVTpn~yLA~Rdae~m~~l~~~LGLsv~~~~~~ 148 (762)
T TIGR03714 69 MFPYDVQVLGAIVLHQGNIAEMKTGEGKTLTATMPLYLNALTGKGAMLVTTNDYLAKRDAEEMGPVYEWLGLTVSLGVVD 148 (762)
T ss_pred CCccHHHHHHHHHhcCCceeEecCCcchHHHHHHHHHHHhhcCCceEEeCCCHHHHHHHHHHHHHHHhhcCCcEEEEECC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999998765
Q ss_pred -----CCHHHHHhccCCCeEEECCCcchhhHHHHhhccchhhhhccCCCCceEEEeecchhhhhccCCCceeccCCCCCC
Q 002515 81 -----MIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKD 155 (913)
Q Consensus 81 -----~~~~~r~~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~tPLiiSg~~~~~ 155 (913)
+++++|+.+|+|||+||||++|+||||||+|+.+....++| +++|+|||||||||||+|+|||||||++..+
T Consensus 149 s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r---~l~~~IVDEaDsILiDeartpliisg~~~~~ 225 (762)
T TIGR03714 149 DPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLR---PFNYVIVDEVDSVLLDSAQTPLVISGAPRVQ 225 (762)
T ss_pred CCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccc---cCcEEEEecHhhHhhccCcCCeeeeCCCccc
Confidence 77889999999999999999999999999999887778888 9999999999999999999999999999988
Q ss_pred ccchHHHHHHHHHhccCCCeEEeCCCCeeeccHhhHHHHHHHhccCCCCCCCC-cHHHHHHHHHHHHHhhccCcceEEEC
Q 002515 156 VARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDEND-PWARFVMNALKAKEFYRRDVQYIVRN 234 (913)
Q Consensus 156 ~~~y~~~~~~v~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~-~l~~~i~~Al~A~~l~~~d~dYiV~d 234 (913)
+.+|..++.++..|.++.||.+|++.++++||++|+.++|++|++.+||++.+ .+.+||++||+|+++|++|+||||+|
T Consensus 226 ~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~~~~~~~i~~al~A~~~~~~d~dYiV~~ 305 (762)
T TIGR03714 226 SNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHINLALRAHYLFKRNKDYVVTN 305 (762)
T ss_pred hHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCCccCChhhHHHHHHHHHHHHHHHHHhcCCceEEEC
Confidence 89999999999999999999999999999999999999999999999998765 68999999999999999999999999
Q ss_pred CeEEEEeCCCCccccCcccChhhhHHHHhHhCCcccCCceeeeeeeehhHHhhcCcccccCCCcccHHHHHHHHhCCCeE
Q 002515 235 GKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPVI 314 (913)
Q Consensus 235 g~V~iVD~~TGR~~~gr~ws~GLHQaieaKEgv~i~~e~~t~a~IT~q~~F~~Y~kL~GmTGTa~te~~Ef~~iY~l~vv 314 (913)
|+|+|||++|||+|+||+||+||||||||||||+|+++++|+|+|||||||++|++|+||||||++++.||+++||++|+
T Consensus 306 ~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~~~~~Ef~~iY~l~v~ 385 (762)
T TIGR03714 306 GEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKVAEKEFIETYSLSVV 385 (762)
T ss_pred CEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCChhHHHHHHHHhCCCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEeccCCcchhhHH
Q 002515 315 EVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREA 394 (913)
Q Consensus 315 ~IPt~~p~~R~d~~d~v~~t~~~k~~aii~ei~~~~~~grPVLI~t~Si~~SE~ls~~L~~~gi~~~vLnA~~k~~~~Ea 394 (913)
+||||+|++|+|+||.||.+..+||.|+++++.++|.+||||||||+|++.|+.++..|.+.|++|++|||+ ++++|+
T Consensus 386 ~IPt~kp~~r~d~~d~i~~~~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~gi~~~~L~a~--~~~~E~ 463 (762)
T TIGR03714 386 KIPTNKPIIRIDYPDKIYATLPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLREGIPHNLLNAQ--NAAKEA 463 (762)
T ss_pred EcCCCCCeeeeeCCCeEEECHHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCC--ChHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999994 778999
Q ss_pred HHHHhcCCCccEEEEcCCCCCCcceecCCChhHHHHHHHHHHHHHHHhhhhcccccccCCCCcchhhhhhhcchhHHHHH
Q 002515 395 ETVAQAGRKYAITISTNMAGRGTDIILGGNPKMLAKKIIEDRLLLLLTREALNVEVDDKTSSPKVLSEIKLGSSSLALLA 474 (913)
Q Consensus 395 ~Iia~AG~~G~VTIATnmAGRGTDIkLgg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (913)
+++++||++|+||||||||||||||+||
T Consensus 464 ~ii~~ag~~g~VlIATdmAgRGtDI~l~---------------------------------------------------- 491 (762)
T TIGR03714 464 QIIAEAGQKGAVTVATSMAGRGTDIKLG---------------------------------------------------- 491 (762)
T ss_pred HHHHHcCCCCeEEEEccccccccCCCCC----------------------------------------------------
Confidence 9999999999999999999999999998
Q ss_pred HHHHHHhhhccccCCchhhhhhhhhhhhhhhhhhhhhHHHHHHHHhhhccCCCCChhhHHHHHHHhhhhhhcccccchhh
Q 002515 475 KAALLAKYVGKAEGKSWTYQEAKSFFSESVEMSQSMNLKELQKLIDKQSAMYPLGPTVALTYLSVLKDCEVHCSNEGSEV 554 (913)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V 554 (913)
++|
T Consensus 492 -----------------------------------------------------------------------------~~v 494 (762)
T TIGR03714 492 -----------------------------------------------------------------------------KGV 494 (762)
T ss_pred -----------------------------------------------------------------------------ccc
Confidence 378
Q ss_pred hhcCceEEEeccCCCchhhHhhhhcccccCCCCCceeEEEeccchhhhhccCCchHHHHHHhhcCCCCC----CCccchH
Q 002515 555 KRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDTSWAVDLISRITNDED----MPIEGDA 630 (913)
Q Consensus 555 ~~~GGL~VIgTerhes~RiD~QLrGRagRQGdpGss~f~lSLeD~l~~~f~~~~~~~~~~~~~~~~~~~----~~i~~~~ 630 (913)
+++||||||+|++|+|+|+|+|++||||||||||+|+||+|+||+||+.|| ++++.++|++++++++ +||++++
T Consensus 495 ~~~GGL~vIit~~~ps~rid~qr~GRtGRqG~~G~s~~~is~eD~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~ 572 (762)
T TIGR03714 495 AELGGLAVIGTERMENSRVDLQLRGRSGRQGDPGSSQFFVSLEDDLIKRWS--PSWLKKYYKKYSVKDSKLKPSALFKRR 572 (762)
T ss_pred cccCCeEEEEecCCCCcHHHHHhhhcccCCCCceeEEEEEccchhhhhhcc--hHHHHHHHHHcCCCcccccCcccccHH
Confidence 899999999999999999999999999999999999999999999999999 9999999999998765 8999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccCCCC-HHHHHHHHHHHHHHHHHHhcCCCCCCCC
Q 002515 631 IVRQLLGLQISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSILTGANES-CSQQIFQYMQAVVDEIIFGNVDPLKHPR 709 (913)
Q Consensus 631 ~~~~i~~aQ~~~E~~~~~~Rk~l~~yd~v~~~QR~~IY~~R~~iL~~~~~~-~~~~i~~~~~~~v~~iv~~~~~~~~~~~ 709 (913)
++++|++||+++|++||++||++++||+|||.||++||++|++||++ ++ +.+.+.+|++++++++++.+..+ +
T Consensus 573 ~~~~i~~aQ~~~e~~~~~~Rk~~~~~d~v~~~QR~~iy~~R~~il~~--~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 646 (762)
T TIGR03714 573 FRKIVEKAQRASEDKGESAREQTNEFEESLSIQRENIYAERNRLIEG--SDFLDDDVDQIIDDVFNMYAEEQDLS----N 646 (762)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CchHHHHHHHHHHHHHHHHHHHhccc----c
Confidence 99999999999999999999999999999999999999999999964 46 89999999999999999876321 1
Q ss_pred cCCHHHHHHHHHHHhccchhhhhccCCccchhhhhhcccccccccccCCCCCCCCCCCccccccccccchhhhhhhhccc
Q 002515 710 YWSLDKLLKEFIAIAGKILDDLFAGISGDTLLKSIEELPELNSIDINNFYFPDLPKPPNLFRGIRRKSSSLKRWLAICSD 789 (913)
Q Consensus 710 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~d 789 (913)
. ++|...+...+.. + .+ .|+.
T Consensus 647 ~---~~l~~~~~~~~~~--~-------~~-------------------------------------------~~~~---- 667 (762)
T TIGR03714 647 K---SLLKRFILENLSY--Q-------FK-------------------------------------------NDPD---- 667 (762)
T ss_pred H---HHHHHHHHHHcCC--C-------hh-------------------------------------------hhhh----
Confidence 1 3343333221100 0 00 0000
Q ss_pred ccccccccccchHHHHHHHHHHHHHHHHHHHHhhcCCH-HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhcccccCC
Q 002515 790 DLTKNGRYRATTNLLRKYLGDILIASYLNVVQESRYDD-VYMKEVERAVLVKTLDCFWRDHLINMNRLSSAVNVRSFGHR 868 (913)
Q Consensus 790 ~~~~~~~~~~~~~~~~~~l~e~~~~~y~~k~~~~~~~~-~~~~~~eR~ilLk~ID~~W~eHLd~Md~LRegI~LRsYgQK 868 (913)
. ......+++++++.+.+.+.|..|.+ .+++ +.++++||.++|++||.+|++||++|++||+|||||+||||
T Consensus 668 ~-----~~~~~~~~~~~~~~~~~~~~~~~k~~--~~~~~~~~~~~~r~~~L~~iD~~W~~hl~~m~~lr~~i~lr~~~q~ 740 (762)
T TIGR03714 668 E-----FDLKNKEAIKDFLKEIADKELSEKKK--VLNNDYLFNDFERLSILKAIDENWIEQVDYLQQLKTVVTNRQNGQR 740 (762)
T ss_pred h-----hccCCHHHHHHHHHHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccC
Confidence 0 00112467888999999999976543 3454 68999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHHHHHHHH
Q 002515 869 NPLEEYKIDGCRFFISMLSATR 890 (913)
Q Consensus 869 DPl~EYkkEaf~lF~~M~~~I~ 890 (913)
||+.|||+|||+||+.|+.+|+
T Consensus 741 dPl~ey~~e~~~~F~~m~~~i~ 762 (762)
T TIGR03714 741 NPIFEYHKEALESYEYMKKEIK 762 (762)
T ss_pred CHHHHHHHHHHHHHHHHHHhhC
Confidence 9999999999999999999874
No 17
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=6e-146 Score=1280.53 Aligned_cols=524 Identities=47% Similarity=0.699 Sum_probs=506.5
Q ss_pred CCCchhHHHHHHHHhcCCeEEecCCCchHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCC
Q 002515 1 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRG 80 (913)
Q Consensus 1 ~rp~dvQl~g~l~L~~G~IaEm~TGEGKTLva~lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLsv~~i~~~ 80 (913)
|+|||||++|+++||+|+||||+||||||++|+||++++++.|++|||||||+|||.||++||++||++|||+|++++++
T Consensus 102 ~~p~~VQ~~~~~~ll~G~Iae~~TGeGKTla~~lp~~~~al~G~~v~VvTptreLA~qdae~~~~l~~~lGlsv~~i~gg 181 (656)
T PRK12898 102 QRHFDVQLMGGLALLSGRLAEMQTGEGKTLTATLPAGTAALAGLPVHVITVNDYLAERDAELMRPLYEALGLTVGCVVED 181 (656)
T ss_pred CCCChHHHHHHHHHhCCCeeeeeCCCCcHHHHHHHHHHHhhcCCeEEEEcCcHHHHHHHHHHHHHHHhhcCCEEEEEeCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHhccCCCeEEECCCcchhhHHHHhhcc-------------------chhhhhccCCCCceEEEeecchhhhhcc
Q 002515 81 MIPEERRSNYRCDITYTNNSELGFDYLRDNLAA-------------------NSEQLVMRWPKPFHFAIVDEVDSVLIDE 141 (913)
Q Consensus 81 ~~~~~r~~aY~~DI~YgT~~e~~fDyLrD~l~~-------------------~~~~~v~r~~R~~~~aIVDEvDsiLiDe 141 (913)
+++++|+.+|+|||+||||++||||||||||+. +.++.++| +++||||||||||||||
T Consensus 182 ~~~~~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r---~~~~aIvDEvDSiLiDe 258 (656)
T PRK12898 182 QSPDERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLR---GLHFAIVDEADSVLIDE 258 (656)
T ss_pred CCHHHHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhccc---ccceeEeecccceeecc
Confidence 999999999999999999999999999999987 55678888 99999999999999999
Q ss_pred CCCceeccCCCCCC--ccchHHHHHHHHHhccCCCeEEeCCCCeeeccHhhHHHHHHHhcc-CCCCCCCCcHHHHHHHHH
Q 002515 142 GRNPLLISGEASKD--VARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALET-NDLWDENDPWARFVMNAL 218 (913)
Q Consensus 142 a~tPLiiSg~~~~~--~~~y~~~~~~v~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~-~~L~~~~~~l~~~i~~Al 218 (913)
|+|||||||+.... .+.|..+..++..|.++.||.+|+++++++||+.|+.++|+++++ .++|+....+.+||++||
T Consensus 259 artpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~~~~~l~~~~~~~~~~~~~i~~Al 338 (656)
T PRK12898 259 ARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAESLPPAWRGAVRREELVRQAL 338 (656)
T ss_pred CCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHHHhCcchhhcccchHHHHHHHHHH
Confidence 99999999998766 578999999999999999999999999999999999999999987 789988778999999999
Q ss_pred HHHHhhccCcceEEECCeEEEEeCCCCccccCcccChhhhHHHHhHhCCcccCCceeeeeeeehhHHhhcCcccccCCCc
Q 002515 219 KAKEFYRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTA 298 (913)
Q Consensus 219 ~A~~l~~~d~dYiV~dg~V~iVD~~TGR~~~gr~ws~GLHQaieaKEgv~i~~e~~t~a~IT~q~~F~~Y~kL~GmTGTa 298 (913)
+|+++|++|+||||+||+|+|||++|||+|+||+||+||||||||||||+|+++++|+|+|||||||++|++|+|||||+
T Consensus 339 ~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a~It~q~~Fr~Y~kl~GmTGTa 418 (656)
T PRK12898 339 SALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITYQRFFRRYLRLAGMTGTA 418 (656)
T ss_pred HHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeeeeehHHHHHHhhHHHhcccCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHhCCCeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHCCC
Q 002515 299 KTEEKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGI 378 (913)
Q Consensus 299 ~te~~Ef~~iY~l~vv~IPt~~p~~R~d~~d~v~~t~~~k~~aii~ei~~~~~~grPVLI~t~Si~~SE~ls~~L~~~gi 378 (913)
+++++||.++|+++|+.||||+|++|+++|+.+|.+..+||.+|++++.+.++.|+||||||+|++.|+.+++.|.+.|+
T Consensus 419 ~~~~~El~~~y~l~vv~IPt~kp~~r~~~~~~v~~t~~~K~~aL~~~i~~~~~~~~pvLIft~t~~~se~L~~~L~~~gi 498 (656)
T PRK12898 419 REVAGELWSVYGLPVVRIPTNRPSQRRHLPDEVFLTAAAKWAAVAARVRELHAQGRPVLVGTRSVAASERLSALLREAGL 498 (656)
T ss_pred hHHHHHHHHHHCCCeEEeCCCCCccceecCCEEEeCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEeccCCcchhhHHHHHHhcCCCccEEEEcCCCCCCcceecCCChhHHHHHHHHHHHHHHHhhhhcccccccCCCCcc
Q 002515 379 PHNVLNARPKYAAREAETVAQAGRKYAITISTNMAGRGTDIILGGNPKMLAKKIIEDRLLLLLTREALNVEVDDKTSSPK 458 (913)
Q Consensus 379 ~~~vLnA~~k~~~~Ea~Iia~AG~~G~VTIATnmAGRGTDIkLgg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (913)
+|.+||++ ++++|++++++||++|.||||||||||||||+++
T Consensus 499 ~~~~Lhg~--~~~rE~~ii~~ag~~g~VlVATdmAgRGtDI~l~------------------------------------ 540 (656)
T PRK12898 499 PHQVLNAK--QDAEEAAIVARAGQRGRITVATNMAGRGTDIKLE------------------------------------ 540 (656)
T ss_pred CEEEeeCC--cHHHHHHHHHHcCCCCcEEEEccchhcccCcCCc------------------------------------
Confidence 99999994 7899999999999999999999999999999987
Q ss_pred hhhhhhhcchhHHHHHHHHHHHhhhccccCCchhhhhhhhhhhhhhhhhhhhhHHHHHHHHhhhccCCCCChhhHHHHHH
Q 002515 459 VLSEIKLGSSSLALLAKAALLAKYVGKAEGKSWTYQEAKSFFSESVEMSQSMNLKELQKLIDKQSAMYPLGPTVALTYLS 538 (913)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 538 (913)
T Consensus 541 -------------------------------------------------------------------------------- 540 (656)
T PRK12898 541 -------------------------------------------------------------------------------- 540 (656)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhhhhhhcccccchhhhhcCceEEEeccCCCchhhHhhhhcccccCCCCCceeEEEeccchhhhhccCCchHHHHHHhhc
Q 002515 539 VLKDCEVHCSNEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDTSWAVDLISRI 618 (913)
Q Consensus 539 ~~~~~~~~~~~~~~~V~~~GGL~VIgTerhes~RiD~QLrGRagRQGdpGss~f~lSLeD~l~~~f~~~~~~~~~~~~~~ 618 (913)
++|.++||||||+|++|+|+|+|+|++|||||||+||+|+||+|+||+||+.|+ ++++.+++..+
T Consensus 541 -------------~~V~~~GGLhVI~~d~P~s~r~y~hr~GRTGRqG~~G~s~~~is~eD~l~~~~~--~~~~~~~~~~~ 605 (656)
T PRK12898 541 -------------PGVAARGGLHVILTERHDSARIDRQLAGRCGRQGDPGSYEAILSLEDDLLQSFL--GSRGLAIRRME 605 (656)
T ss_pred -------------cchhhcCCCEEEEcCCCCCHHHHHHhcccccCCCCCeEEEEEechhHHHHHhhh--hHHHHHHHHHh
Confidence 468899999999999999999999999999999999999999999999999999 99999999988
Q ss_pred CCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 002515 619 TNDEDMPIEGDAIVRQLLGLQISAEKYYFGIRKSLVEFDEVLEV 662 (913)
Q Consensus 619 ~~~~~~~i~~~~~~~~i~~aQ~~~E~~~~~~Rk~l~~yd~v~~~ 662 (913)
++.+ .+.+++++++|++||+++|++||++||++++||++++.
T Consensus 606 ~~~~--~~~~~~~~~~~~~aQ~~~e~~~~~~Rk~~~~~d~~~~~ 647 (656)
T PRK12898 606 LLGP--RGGRALGALLLRRAQRRAERLHARARRALLHADEQLDK 647 (656)
T ss_pred cCCC--cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7754 36699999999999999999999999999999999874
No 18
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=100.00 E-value=1.2e-64 Score=542.69 Aligned_cols=191 Identities=65% Similarity=1.009 Sum_probs=174.4
Q ss_pred CCCchhHHHHHHHHhcCCeEEecCCCchHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCC
Q 002515 1 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRG 80 (913)
Q Consensus 1 ~rp~dvQl~g~l~L~~G~IaEm~TGEGKTLva~lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLsv~~i~~~ 80 (913)
|+|||||++|+++||+|+||||+|||||||+++|||+++||.|++|||||+|+|||+||++||+|||++|||+|++++++
T Consensus 76 ~~p~~vQll~~l~L~~G~laEm~TGEGKTli~~l~a~~~AL~G~~V~vvT~NdyLA~RD~~~~~~~y~~LGlsv~~~~~~ 155 (266)
T PF07517_consen 76 LRPYDVQLLGALALHKGRLAEMKTGEGKTLIAALPAALNALQGKGVHVVTSNDYLAKRDAEEMRPFYEFLGLSVGIITSD 155 (266)
T ss_dssp ----HHHHHHHHHHHTTSEEEESTTSHHHHHHHHHHHHHHTTSS-EEEEESSHHHHHHHHHHHHHHHHHTT--EEEEETT
T ss_pred CcccHHHHhhhhhcccceeEEecCCCCcHHHHHHHHHHHHHhcCCcEEEeccHHHhhccHHHHHHHHHHhhhccccCccc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHhccCCCeEEECCCcchhhHHHHhhccchhhhhccCCCCceEEEeecchhhhhccCCCceeccCCCCCCccchH
Q 002515 81 MIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYP 160 (913)
Q Consensus 81 ~~~~~r~~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~tPLiiSg~~~~~~~~y~ 160 (913)
+++++|+++|+||||||||++|+||||||++..++...++| +++|||||||||||||+|++||+|||
T Consensus 156 ~~~~~r~~~Y~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r---~~~~~ivDEvDs~LiDea~~pl~is~---------- 222 (266)
T PF07517_consen 156 MSSEERREAYAADIVYGTNSEFGFDYLRDNLALSKNEQVQR---GFDFAIVDEVDSILIDEARTPLIISG---------- 222 (266)
T ss_dssp TEHHHHHHHHHSSEEEEEHHHHHHHHHHHTT-SSGGG--SS---SSSEEEECTHHHHTTTGCCSEEEEEE----------
T ss_pred cCHHHHHHHHhCcccccccchhhHHHHHHHHhhccchhccC---CCCEEEEeccceEEEecCcccccccc----------
Confidence 99999999999999999999999999999999988888888 99999999999999999999999998
Q ss_pred HHHHHHHHhccCCCeEEeCCCCeeeccHhhHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHhhccCcceEEECCeEEEE
Q 002515 161 VAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVRNGKALII 240 (913)
Q Consensus 161 ~~~~~v~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~l~~~i~~Al~A~~l~~~d~dYiV~dg~V~iV 240 (913)
T Consensus 223 -------------------------------------------------------------------------------- 222 (266)
T PF07517_consen 223 -------------------------------------------------------------------------------- 222 (266)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eCCCCccccCcccChhhhHHHHhHhCCcccCCceeeeeeeehhHHhhcCcccccCCCcccHHHHHH
Q 002515 241 NELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFL 306 (913)
Q Consensus 241 D~~TGR~~~gr~ws~GLHQaieaKEgv~i~~e~~t~a~IT~q~~F~~Y~kL~GmTGTa~te~~Ef~ 306 (913)
+|||++|+|++.|+++||||+||++|++|+|||||++++++||+
T Consensus 223 ----------------------~Ke~~~i~~~~~t~a~is~q~~f~~Y~~l~GmTGTa~~~~~e~~ 266 (266)
T PF07517_consen 223 ----------------------AKEGLKITPESLTLASISYQNFFRLYPKLSGMTGTAKTEAKEFW 266 (266)
T ss_dssp ----------------------HHTTS----SEEEEEEEEHHHHHTTSSEEEEEESSTGGGHHHHH
T ss_pred ----------------------cccCCccCCCCeEEEEeehHHHHHhcchheeeCCCChhhHhhcC
Confidence 89999999999999999999999999999999999999999996
No 19
>PF07516 SecA_SW: SecA Wing and Scaffold domain; InterPro: IPR011116 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner. This domain is composed of two C-terminal alpha helical subdomains: the wing and scaffold subdomains.; GO: 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 2IPC_D 3JUX_A 3DIN_B ....
Probab=100.00 E-value=4.5e-46 Score=389.17 Aligned_cols=214 Identities=31% Similarity=0.493 Sum_probs=184.7
Q ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHhcCCC
Q 002515 625 PIEGDAIVRQLLGLQISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSILTGANESCSQQIFQYMQAVVDEIIFGNVDP 704 (913)
Q Consensus 625 ~i~~~~~~~~i~~aQ~~~E~~~~~~Rk~l~~yd~v~~~QR~~IY~~R~~iL~~~~~~~~~~i~~~~~~~v~~iv~~~~~~ 704 (913)
||+|++++++|++||++||++||++||+|++||+|||.||++||++|++||.++ ++++.+.+|++++|+++|+.+.++
T Consensus 1 pIe~~~i~~~Ie~aQkkvE~~nf~~Rk~lleyD~Vl~~QR~~IY~~R~~iL~~~--~~~~~i~~~~~~~i~~~v~~~~~~ 78 (214)
T PF07516_consen 1 PIESKMISKSIEKAQKKVEGRNFDIRKNLLEYDDVLNQQRKVIYKQRDKILEGE--DLEEIILEMIEDVIDDIVDEYIPE 78 (214)
T ss_dssp SB-SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTS--CCHHHHHHHHHHHHHHHHHHHSSS
T ss_pred CCCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--ChHHHHHHHHHHHHHHHHHHHccc
Confidence 799999999999999999999999999999999999999999999999999654 699999999999999999999988
Q ss_pred CCCCCcCCHHHHHHHHHHHhccchhhhhccCCccchhhhhhcccccccccccCCCCCCCCCCCccccccccccchhhhhh
Q 002515 705 LKHPRYWSLDKLLKEFIAIAGKILDDLFAGISGDTLLKSIEELPELNSIDINNFYFPDLPKPPNLFRGIRRKSSSLKRWL 784 (913)
Q Consensus 705 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 784 (913)
...+++|++++|...+...++.... +++ ...
T Consensus 79 ~~~~~~~~~~~l~~~l~~~~~~~~~-----~~~------------------------------~~~-------------- 109 (214)
T PF07516_consen 79 KDSPEEWDIEGLKDFLNQNFNLDFD-----ISP------------------------------EDL-------------- 109 (214)
T ss_dssp SSSSTSSCHHHHHHHHHHCSSSSSC-----HCS------------------------------CHH--------------
T ss_pred ccCcccccHHHHHHHHHHHcCCCcc-----hhH------------------------------HHH--------------
Confidence 8778999999998877654221000 000 000
Q ss_pred hhcccccccccccccchHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhccc
Q 002515 785 AICSDDLTKNGRYRATTNLLRKYLGDILIASYLNVVQESRYDDVYMKEVERAVLVKTLDCFWRDHLINMNRLSSAVNVRS 864 (913)
Q Consensus 785 ~~~~d~~~~~~~~~~~~~~~~~~l~e~~~~~y~~k~~~~~~~~~~~~~~eR~ilLk~ID~~W~eHLd~Md~LRegI~LRs 864 (913)
....+.++++++|.+.+.+.|..+ ...++++.+++++|.+||++||.+|++||++|++||+|||||+
T Consensus 110 -----------~~~~~~~~~~~~l~~~~~~~~~~k--~~~~~~~~~~~~eR~ilL~~ID~~W~~HL~~m~~Lr~~I~lR~ 176 (214)
T PF07516_consen 110 -----------INNKDKEELKKYLFEQVEESYERK--EEEIGEEQFNEFERYILLKAIDQNWKDHLDNMDQLREGIGLRS 176 (214)
T ss_dssp -----------SSSSTCHHHHHHHHHHHHHHHHHH--HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTCTT
T ss_pred -----------hccCCHHHHHHHHHHHHHHHHHHH--HhhccHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 011245678999999999999664 4577899999999999999999999999999999999999999
Q ss_pred ccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhHhccc
Q 002515 865 FGHRNPLEEYKIDGCRFFISMLSATRRLTVESLVQYWS 902 (913)
Q Consensus 865 YgQKDPl~EYkkEaf~lF~~M~~~I~~~~v~~l~~~~~ 902 (913)
||||||+.|||+|||+||+.|+.+|+++++++||++++
T Consensus 177 y~QkdPl~EYk~Ea~~lF~~m~~~i~~~i~~~l~~~~i 214 (214)
T PF07516_consen 177 YGQKDPLVEYKREAFELFEEMLENIREDIIRNLFRSQI 214 (214)
T ss_dssp SSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-B-
T ss_pred HccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999999999874
No 20
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=1.6e-29 Score=289.52 Aligned_cols=281 Identities=21% Similarity=0.283 Sum_probs=207.6
Q ss_pred CCchhHHHHHHHHhcCC--eEEecCCCchHHHHHHHHHHHHHc---------CCcEEEEecCHHHHHHHHHHHHHHhhhc
Q 002515 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALT---------GEGVHVVTVNDYLAQRDAEWMERVHRFL 70 (913)
Q Consensus 2 rp~dvQl~g~l~L~~G~--IaEm~TGEGKTLva~lpa~l~AL~---------G~~VhVvT~NdyLA~RDae~~~~~y~~L 70 (913)
.|+|+|..+.+.++.|+ |+..+||+||||+|++|++.+... |..|.|++|+++||.+....+..|-..+
T Consensus 113 ~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~PTRELA~QV~~~~~~~~~~~ 192 (519)
T KOG0331|consen 113 KPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLAPTRELAVQVQAEAREFGKSL 192 (519)
T ss_pred CCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEEcCcHHHHHHHHHHHHHHcCCC
Confidence 69999999999999999 999999999999999999877665 4579999999999999999999999999
Q ss_pred CCeEEEEcCCCC--HHHHHhccCCCeEEECCCcchhhHHHHhhccchhhhhccCCCCceEEEeecchhhhhccCCCceec
Q 002515 71 GLSVGLIQRGMI--PEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLI 148 (913)
Q Consensus 71 GLsv~~i~~~~~--~~~r~~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~tPLii 148 (913)
++++.|++++.+ +|.+....++||+.||++++ .|.+..+ ...++ .+.|+++||||.|| |+++-|
T Consensus 193 ~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl-----~d~le~g--~~~l~---~v~ylVLDEADrMl-dmGFe~--- 258 (519)
T KOG0331|consen 193 RLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRL-----IDLLEEG--SLNLS---RVTYLVLDEADRML-DMGFEP--- 258 (519)
T ss_pred CccEEEEeCCCCccHHHHHHhcCCcEEEeCChHH-----HHHHHcC--Ccccc---ceeEEEeccHHhhh-ccccHH---
Confidence 999999999876 78888899999999999984 6666544 34566 89999999999999 766554
Q ss_pred cCCCCCCccchHHHHHHHHHhccCCCeEEeCCCCeeeccHhhHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHhhccCc
Q 002515 149 SGEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDV 228 (913)
Q Consensus 149 Sg~~~~~~~~y~~~~~~v~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~l~~~i~~Al~A~~l~~~d~ 228 (913)
++.+++..+.+. .+++. +|+++ |..++.+. |..++.
T Consensus 259 ------------qI~~Il~~i~~~--------~rQtl-----------------m~saT--wp~~v~~l--A~~fl~--- 294 (519)
T KOG0331|consen 259 ------------QIRKILSQIPRP--------DRQTL-----------------MFSAT--WPKEVRQL--AEDFLN--- 294 (519)
T ss_pred ------------HHHHHHHhcCCC--------cccEE-----------------EEeee--ccHHHHHH--HHHHhc---
Confidence 888888888432 33444 45544 55666653 444443
Q ss_pred ceEEECCeEEEEeCCCCccccCcccChhhhHHHHhHhCCcccCCceeeeeeeehhHHhhcCcccccCCCcccHHHHHHHH
Q 002515 229 QYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKM 308 (913)
Q Consensus 229 dYiV~dg~V~iVD~~TGR~~~gr~ws~GLHQaieaKEgv~i~~e~~t~a~IT~q~~F~~Y~kL~GmTGTa~te~~Ef~~i 308 (913)
+|+-.+ ++- .... .|-+++
T Consensus 295 ~~~~i~----ig~-----~~~~-----------~a~~~i----------------------------------------- 313 (519)
T KOG0331|consen 295 NPIQIN----VGN-----KKEL-----------KANHNI----------------------------------------- 313 (519)
T ss_pred CceEEE----ecc-----hhhh-----------hhhcch-----------------------------------------
Confidence 444321 111 1000 000000
Q ss_pred hCCCeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHHH-hcCCcEEEEecchhhHHHHHHHHHHCCCCeEEeccCC
Q 002515 309 FQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMF-RLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARP 387 (913)
Q Consensus 309 Y~l~vv~IPt~~p~~R~d~~d~v~~t~~~k~~aii~ei~~~~-~~grPVLI~t~Si~~SE~ls~~L~~~gi~~~vLnA~~ 387 (913)
.=+ ..-.+..+|...+...+...+ ..+-+|||||.++..|+.|+..|...|+++..||++.
T Consensus 314 ---~qi---------------ve~~~~~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~ 375 (519)
T KOG0331|consen 314 ---RQI---------------VEVCDETAKLRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDK 375 (519)
T ss_pred ---hhh---------------hhhcCHHHHHHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccc
Confidence 000 001234455555444444433 4556999999999999999999999999999999985
Q ss_pred cchhhHHHHHH-hcCCCccEEEEcCCCCCCccee
Q 002515 388 KYAAREAETVA-QAGRKYAITISTNMAGRGTDII 420 (913)
Q Consensus 388 k~~~~Ea~Iia-~AG~~G~VTIATnmAGRGTDIk 420 (913)
.+.+|+..+-. +.| .-.|.||||+|+||.||+
T Consensus 376 sQ~eR~~~L~~FreG-~~~vLVATdVAaRGLDi~ 408 (519)
T KOG0331|consen 376 SQSERDWVLKGFREG-KSPVLVATDVAARGLDVP 408 (519)
T ss_pred cHHHHHHHHHhcccC-CcceEEEcccccccCCCc
Confidence 55555543333 456 458999999999999995
No 21
>PF01043 SecA_PP_bind: SecA preprotein cross-linking domain; InterPro: IPR011130 The SecA ATPase is involved in the insertion and retraction of preproteins through the plasma membrane. This domain has been found to cross-link to preproteins, thought to indicate a role in preprotein binding. The pre-protein cross-linking domain is comprised of two sub domains that are inserted within the ATPase domain [].; GO: 0017038 protein import, 0016020 membrane; PDB: 3DIN_B 3JUX_A 3IQY_A 2IBM_A 3DL8_A 3JV2_B 3IQM_A 1TF2_A 1TF5_A 1M74_A ....
Probab=99.97 E-value=2.7e-30 Score=244.77 Aligned_cols=109 Identities=43% Similarity=0.722 Sum_probs=103.4
Q ss_pred CCccchHHHHHHHHHhccCCCeEEeCCCCeeeccHhhHHHHHHHhcc-CCCCCCCC-cHHHHHHHHHHHHHhhccCcceE
Q 002515 154 KDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALET-NDLWDEND-PWARFVMNALKAKEFYRRDVQYI 231 (913)
Q Consensus 154 ~~~~~y~~~~~~v~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~-~~L~~~~~-~l~~~i~~Al~A~~l~~~d~dYi 231 (913)
.+++.|..++++++.|.++.||.+|+++++|+||+.|+.+++.++++ +++|+..+ +|.++|.+||+|+++|++|+|||
T Consensus 3 ~~~~~y~~a~~~~~~L~~~~dy~vde~~~~v~LT~~G~~~~e~~~~~~~~l~~~~~~~~~~~i~~AL~A~~l~~rd~dYi 82 (113)
T PF01043_consen 3 DSSNLYREADKFAKQLKEDEDYEVDEKQRTVELTEKGIEKAEKLLGISDNLYDEENSELYHHINQALKAHHLFKRDVDYI 82 (113)
T ss_dssp SCHHHHHHHHHHHHHSHTTTSECECTSTTEEEESHHHHHHHHHHHTSSSSTTSTTCHHHHHHHHHHHHHHHCSTTTTSEE
T ss_pred hhHHHHHHHHHHHHhCCCCCCEEEeCCCCeeeEhHHHHHHHHHHhhhcccccccccHHHHHHHHHHHHHHHHHhCCcceE
Confidence 45678999999999999999999999999999999999999999999 99999988 89999999999999999999999
Q ss_pred EECCeEEEEeCCCCccccCcccChhhhHHHH
Q 002515 232 VRNGKALIINELTGRVEEKRRWSEGIHQAVE 262 (913)
Q Consensus 232 V~dg~V~iVD~~TGR~~~gr~ws~GLHQaie 262 (913)
|+||+|+|||++|||+||||+||+|||||||
T Consensus 83 V~dg~V~IVDe~TGR~m~gRrws~GLHQaIE 113 (113)
T PF01043_consen 83 VRDGEVVIVDEFTGRIMPGRRWSDGLHQAIE 113 (113)
T ss_dssp EETTEEEEBCTTTTSEBTT--STTTHHHHHH
T ss_pred EEcCEEEEEECCCCCcCCCCcCCchhhHhhC
Confidence 9999999999999999999999999999997
No 22
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=99.95 E-value=6.8e-27 Score=261.95 Aligned_cols=299 Identities=21% Similarity=0.298 Sum_probs=221.9
Q ss_pred CCCchhHHHHHHHHhcCC--eEEecCCCchHHHHHHHHHH------------HHHcCCcEEEEecCHHHHHHHHHHHHHH
Q 002515 1 MRHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYL------------NALTGEGVHVVTVNDYLAQRDAEWMERV 66 (913)
Q Consensus 1 ~rp~dvQl~g~l~L~~G~--IaEm~TGEGKTLva~lpa~l------------~AL~G~~VhVvT~NdyLA~RDae~~~~~ 66 (913)
|-|.|+|-++++++++.+ |.-+.||+|||++|.+|+.. +-..|....|+.|++.||++..++-..|
T Consensus 266 ~eptpIqR~aipl~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaqqIeeEt~kf 345 (673)
T KOG0333|consen 266 KEPTPIQRQAIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQIEEETNKF 345 (673)
T ss_pred CCCchHHHhhccchhccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcccCceeeeechHHHHHHHHHHHHHHh
Confidence 569999999999888755 88888999999999988753 2334788999999999999999999999
Q ss_pred hhhcCCeEEEEcCCCCHHHH--HhccCCCeEEECCCcchhhHHHHhhccchhhhhccCCCCceEEEeecchhhhhccCCC
Q 002515 67 HRFLGLSVGLIQRGMIPEER--RSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRN 144 (913)
Q Consensus 67 y~~LGLsv~~i~~~~~~~~r--~~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~t 144 (913)
...||+.+..+.++.+-+++ +..-+|+|+.+||+++ .|.|-.+ .+|+. .+.|+++||||.|+ |+++.
T Consensus 346 ~~~lg~r~vsvigg~s~EEq~fqls~gceiviatPgrL-id~Lenr------~lvl~---qctyvvldeadrmi-DmgfE 414 (673)
T KOG0333|consen 346 GKPLGIRTVSVIGGLSFEEQGFQLSMGCEIVIATPGRL-IDSLENR------YLVLN---QCTYVVLDEADRMI-DMGFE 414 (673)
T ss_pred cccccceEEEEecccchhhhhhhhhccceeeecCchHH-HHHHHHH------HHHhc---cCceEeccchhhhh-ccccc
Confidence 99999999999999998888 7888999999999996 4444332 36777 89999999999997 88877
Q ss_pred ceeccCCCCCCccchHHHHHHHHHhccCCCeEEeCCCCeeeccHhhHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHhh
Q 002515 145 PLLISGEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFY 224 (913)
Q Consensus 145 PLiiSg~~~~~~~~y~~~~~~v~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~l~~~i~~Al~A~~l~ 224 (913)
| .+.+++..+..... .-| .-+.+|..++ + ..|
T Consensus 415 ~---------------dv~~iL~~mPssn~-k~~------tde~~~~~~~------------------------~--~~~ 446 (673)
T KOG0333|consen 415 P---------------DVQKILEQMPSSNA-KPD------TDEKEGEERV------------------------R--KNF 446 (673)
T ss_pred H---------------HHHHHHHhCCcccc-CCC------ccchhhHHHH------------------------H--hhc
Confidence 6 56666666643100 000 0000111110 0 111
Q ss_pred ccCcceEEECCeEEEEeCCCCccccCcccChhhhHHHHhHhCCcccCCceeeeeeeehhHHhhcCcccccCCCcccHHHH
Q 002515 225 RRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKE 304 (913)
Q Consensus 225 ~~d~dYiV~dg~V~iVD~~TGR~~~gr~ws~GLHQaieaKEgv~i~~e~~t~a~IT~q~~F~~Y~kL~GmTGTa~te~~E 304 (913)
... +.|..-...|.|.....+-
T Consensus 447 ~~~----------------------------------------------------------k~yrqT~mftatm~p~ver 468 (673)
T KOG0333|consen 447 SSS----------------------------------------------------------KKYRQTVMFTATMPPAVER 468 (673)
T ss_pred ccc----------------------------------------------------------cceeEEEEEecCCChHHHH
Confidence 111 1233344567777766666
Q ss_pred HHHHhCC-Ce-EEeCC-CCCcccccCCCeEEeChhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHCCCCeE
Q 002515 305 FLKMFQM-PV-IEVPT-NLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHN 381 (913)
Q Consensus 305 f~~iY~l-~v-v~IPt-~~p~~R~d~~d~v~~t~~~k~~aii~ei~~~~~~grPVLI~t~Si~~SE~ls~~L~~~gi~~~ 381 (913)
+.+.|=- +| +.|-+ ++|.-|. ..-+++.+..+||.++++-+... ..-|++||.++++.++.|++.|.+.|+.+.
T Consensus 469 lar~ylr~pv~vtig~~gk~~~rv-eQ~v~m~~ed~k~kkL~eil~~~--~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~ 545 (673)
T KOG0333|consen 469 LARSYLRRPVVVTIGSAGKPTPRV-EQKVEMVSEDEKRKKLIEILESN--FDPPIIIFVNTKKGADALAKILEKAGYKVT 545 (673)
T ss_pred HHHHHhhCCeEEEeccCCCCccch-heEEEEecchHHHHHHHHHHHhC--CCCCEEEEEechhhHHHHHHHHhhccceEE
Confidence 6655533 33 44543 3444443 33466789999999988666653 456999999999999999999999999999
Q ss_pred EeccCCcchhhHHHHHH-hcCCCccEEEEcCCCCCCccee
Q 002515 382 VLNARPKYAAREAETVA-QAGRKYAITISTNMAGRGTDII 420 (913)
Q Consensus 382 vLnA~~k~~~~Ea~Iia-~AG~~G~VTIATnmAGRGTDIk 420 (913)
.||+..++.++|-.+-. ++| .+.|.||||.||||+||+
T Consensus 546 tlHg~k~qeQRe~aL~~fr~~-t~dIlVaTDvAgRGIDIp 584 (673)
T KOG0333|consen 546 TLHGGKSQEQRENALADFREG-TGDILVATDVAGRGIDIP 584 (673)
T ss_pred EeeCCccHHHHHHHHHHHHhc-CCCEEEEecccccCCCCC
Confidence 99998778888866665 677 678999999999999995
No 23
>PTZ00110 helicase; Provisional
Probab=99.95 E-value=8.4e-26 Score=266.09 Aligned_cols=280 Identities=22% Similarity=0.304 Sum_probs=189.5
Q ss_pred CCchhHHHHHHHHhcCC--eEEecCCCchHHHHHHHHHHHHHc--------CCcEEEEecCHHHHHHHHHHHHHHhhhcC
Q 002515 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALT--------GEGVHVVTVNDYLAQRDAEWMERVHRFLG 71 (913)
Q Consensus 2 rp~dvQl~g~l~L~~G~--IaEm~TGEGKTLva~lpa~l~AL~--------G~~VhVvT~NdyLA~RDae~~~~~y~~LG 71 (913)
.|+++|..+.+++++|+ |+.+.||+|||++|+||++.+.+. |..|.|++|+.+||.+..+++..|...++
T Consensus 152 ~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LIL~PTreLa~Qi~~~~~~~~~~~~ 231 (545)
T PTZ00110 152 EPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLVLAPTRELAEQIREQCNKFGASSK 231 (545)
T ss_pred CCCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEEECChHHHHHHHHHHHHHHhcccC
Confidence 59999999999999998 999999999999999999865443 44689999999999999999999999999
Q ss_pred CeEEEEcCCCCHHH--HHhccCCCeEEECCCcchhhHHHHhhccchhhhhccCCCCceEEEeecchhhhhccCCCceecc
Q 002515 72 LSVGLIQRGMIPEE--RRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLIS 149 (913)
Q Consensus 72 Lsv~~i~~~~~~~~--r~~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~tPLiiS 149 (913)
+++.++.++.+... +...-.+||+++|++.| .|+|.... ..++ .+.++||||||.|| |.+
T Consensus 232 i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL-~d~l~~~~------~~l~---~v~~lViDEAd~ml-d~g------- 293 (545)
T PTZ00110 232 IRNTVAYGGVPKRGQIYALRRGVEILIACPGRL-IDFLESNV------TNLR---RVTYLVLDEADRML-DMG------- 293 (545)
T ss_pred ccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHH-HHHHHcCC------CChh---hCcEEEeehHHhhh-hcc-------
Confidence 99999998876443 33445689999999986 45554321 2234 78999999999987 432
Q ss_pred CCCCCCccchHHHHHHHHHhccCCCeEEeCCCCeeeccHhhHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHhhccCcc
Q 002515 150 GEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQ 229 (913)
Q Consensus 150 g~~~~~~~~y~~~~~~v~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~l~~~i~~Al~A~~l~~~d~d 229 (913)
+.+.+..+...+.+ ++++. +|+++.+ ..+... |+.++..+
T Consensus 294 --------f~~~i~~il~~~~~---------~~q~l-----------------~~SAT~p--~~v~~l--~~~l~~~~-- 333 (545)
T PTZ00110 294 --------FEPQIRKIVSQIRP---------DRQTL-----------------MWSATWP--KEVQSL--ARDLCKEE-- 333 (545)
T ss_pred --------hHHHHHHHHHhCCC---------CCeEE-----------------EEEeCCC--HHHHHH--HHHHhccC--
Confidence 22345555555532 23333 3343321 111111 22222111
Q ss_pred eEEECCeEEEEeCCCCccccCcccChhhhHHHHhHhCCcccCCceeeeeeeehhHHhhcCcccccCCCcccHHHHHHHHh
Q 002515 230 YIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMF 309 (913)
Q Consensus 230 YiV~dg~V~iVD~~TGR~~~gr~ws~GLHQaieaKEgv~i~~e~~t~a~IT~q~~F~~Y~kL~GmTGTa~te~~Ef~~iY 309 (913)
++ . ++. |.+. ++
T Consensus 334 ~v------~-i~v--g~~~---------------------------------------------l~-------------- 345 (545)
T PTZ00110 334 PV------H-VNV--GSLD---------------------------------------------LT-------------- 345 (545)
T ss_pred CE------E-EEE--CCCc---------------------------------------------cc--------------
Confidence 00 0 000 0000 00
Q ss_pred CCCeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEeccCCcc
Q 002515 310 QMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKY 389 (913)
Q Consensus 310 ~l~vv~IPt~~p~~R~d~~d~v~~t~~~k~~aii~ei~~~~~~grPVLI~t~Si~~SE~ls~~L~~~gi~~~vLnA~~k~ 389 (913)
+. +.. .....+....+|...+.+.+......+.++||||+++..++.++..|...|+++..+|++..+
T Consensus 346 --------~~-~~i---~q~~~~~~~~~k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~ 413 (545)
T PTZ00110 346 --------AC-HNI---KQEVFVVEEHEKRGKLKMLLQRIMRDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQ 413 (545)
T ss_pred --------cC-CCe---eEEEEEEechhHHHHHHHHHHHhcccCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcH
Confidence 00 000 011223344566766666665555578899999999999999999999999999999997555
Q ss_pred hhhHHHHHH-hcCCCccEEEEcCCCCCCccee
Q 002515 390 AAREAETVA-QAGRKYAITISTNMAGRGTDII 420 (913)
Q Consensus 390 ~~~Ea~Iia-~AG~~G~VTIATnmAGRGTDIk 420 (913)
.+|+..+-. +.| ...|.|||+.|+||+||.
T Consensus 414 ~eR~~il~~F~~G-~~~ILVaTdv~~rGIDi~ 444 (545)
T PTZ00110 414 EERTWVLNEFKTG-KSPIMIATDVASRGLDVK 444 (545)
T ss_pred HHHHHHHHHHhcC-CCcEEEEcchhhcCCCcc
Confidence 555543333 455 457999999999999995
No 24
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.94 E-value=2.8e-25 Score=253.66 Aligned_cols=275 Identities=17% Similarity=0.186 Sum_probs=184.9
Q ss_pred CCchhHHHHHHHHhcCC--eEEecCCCchHHHHHHHHHHHHHc----------CCcEEEEecCHHHHHHHHHHHHHHhhh
Q 002515 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALT----------GEGVHVVTVNDYLAQRDAEWMERVHRF 69 (913)
Q Consensus 2 rp~dvQl~g~l~L~~G~--IaEm~TGEGKTLva~lpa~l~AL~----------G~~VhVvT~NdyLA~RDae~~~~~y~~ 69 (913)
.|+++|-.+.+.+++|+ |+++.||+|||++|++|++-.-+. +..+.|++|+.+||.+-++++..+...
T Consensus 30 ~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~lil~PtreLa~Qi~~~~~~l~~~ 109 (423)
T PRK04837 30 NCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRALIMAPTRELAVQIHADAEPLAQA 109 (423)
T ss_pred CCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceEEEECCcHHHHHHHHHHHHHHhcc
Confidence 68999999999999998 999999999999999999733321 346899999999999999999999999
Q ss_pred cCCeEEEEcCCCCHHHH--HhccCCCeEEECCCcchhhHHHHhhccchhhhhccCCCCceEEEeecchhhhhccCCCcee
Q 002515 70 LGLSVGLIQRGMIPEER--RSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLL 147 (913)
Q Consensus 70 LGLsv~~i~~~~~~~~r--~~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~tPLi 147 (913)
+|++++++.++.+.... ....++||++||++.+ .++++... ..+. .+.++||||||.++ |.+
T Consensus 110 ~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l-~~~l~~~~------~~l~---~v~~lViDEad~l~-~~~----- 173 (423)
T PRK04837 110 TGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRL-IDYAKQNH------INLG---AIQVVVLDEADRMF-DLG----- 173 (423)
T ss_pred CCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHH-HHHHHcCC------cccc---cccEEEEecHHHHh-hcc-----
Confidence 99999999988764433 2344689999999987 45554321 2234 79999999999987 321
Q ss_pred ccCCCCCCccchHHHHHHHHHhccCCCeEEeCCCCeeeccHhhHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHhhccC
Q 002515 148 ISGEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRD 227 (913)
Q Consensus 148 iSg~~~~~~~~y~~~~~~v~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~l~~~i~~Al~A~~l~~~d 227 (913)
+...+..+...+... +.+... +|+
T Consensus 174 ----------f~~~i~~i~~~~~~~-------~~~~~~-----------------l~S---------------------- 197 (423)
T PRK04837 174 ----------FIKDIRWLFRRMPPA-------NQRLNM-----------------LFS---------------------- 197 (423)
T ss_pred ----------cHHHHHHHHHhCCCc-------cceeEE-----------------EEe----------------------
Confidence 122333333333210 011111 223
Q ss_pred cceEEECCeEEEEeCCCCccccCcccChhhhHHHHhHhCCcccCCceeeeeeeehhHHhhcCcccccCCCcccHHHHHHH
Q 002515 228 VQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLK 307 (913)
Q Consensus 228 ~dYiV~dg~V~iVD~~TGR~~~gr~ws~GLHQaieaKEgv~i~~e~~t~a~IT~q~~F~~Y~kL~GmTGTa~te~~Ef~~ 307 (913)
+|......++..
T Consensus 198 --------------------------------------------------------------------AT~~~~~~~~~~ 209 (423)
T PRK04837 198 --------------------------------------------------------------------ATLSYRVRELAF 209 (423)
T ss_pred --------------------------------------------------------------------ccCCHHHHHHHH
Confidence 333222222211
Q ss_pred -HhCC-CeEEeCC-CCCcccccCCCeEEeChhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEec
Q 002515 308 -MFQM-PVIEVPT-NLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLN 384 (913)
Q Consensus 308 -iY~l-~vv~IPt-~~p~~R~d~~d~v~~t~~~k~~aii~ei~~~~~~grPVLI~t~Si~~SE~ls~~L~~~gi~~~vLn 384 (913)
..+- ..+.+.+ .....+. ....++.+..+|...+...+.. .....+||||++...++.++..|.+.|+++..+|
T Consensus 210 ~~~~~p~~i~v~~~~~~~~~i-~~~~~~~~~~~k~~~l~~ll~~--~~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lh 286 (423)
T PRK04837 210 EHMNNPEYVEVEPEQKTGHRI-KEELFYPSNEEKMRLLQTLIEE--EWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLT 286 (423)
T ss_pred HHCCCCEEEEEcCCCcCCCce-eEEEEeCCHHHHHHHHHHHHHh--cCCCeEEEEECCHHHHHHHHHHHHhCCCcEEEec
Confidence 1111 1111211 1110110 1123355667777776655543 3467899999999999999999999999999999
Q ss_pred cCCcchhhHHHHHH-hcCCCccEEEEcCCCCCCccee
Q 002515 385 ARPKYAAREAETVA-QAGRKYAITISTNMAGRGTDII 420 (913)
Q Consensus 385 A~~k~~~~Ea~Iia-~AG~~G~VTIATnmAGRGTDIk 420 (913)
++..+.+++..+-+ +.| .-.|.||||+|+||+||.
T Consensus 287 g~~~~~~R~~~l~~F~~g-~~~vLVaTdv~~rGiDip 322 (423)
T PRK04837 287 GDVAQKKRLRILEEFTRG-DLDILVATDVAARGLHIP 322 (423)
T ss_pred CCCChhHHHHHHHHHHcC-CCcEEEEechhhcCCCcc
Confidence 97544455433333 566 457999999999999994
No 25
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=1.2e-25 Score=263.03 Aligned_cols=275 Identities=19% Similarity=0.258 Sum_probs=199.0
Q ss_pred CCchhHHHHHHHHhcCC--eEEecCCCchHHHHHHHHHHHHHc--CC---c-EEEEecCHHHHHHHHHHHHHHhhhc-CC
Q 002515 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALT--GE---G-VHVVTVNDYLAQRDAEWMERVHRFL-GL 72 (913)
Q Consensus 2 rp~dvQl~g~l~L~~G~--IaEm~TGEGKTLva~lpa~l~AL~--G~---~-VhVvT~NdyLA~RDae~~~~~y~~L-GL 72 (913)
.|++||..+++.++.|+ |++.+||+|||++|++|++-. +. +. . +.|++|+++||.|.++.+..+...+ ++
T Consensus 51 ~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~-l~~~~~~~~~~aLil~PTRELA~Qi~~~~~~~~~~~~~~ 129 (513)
T COG0513 51 EPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQK-ILKSVERKYVSALILAPTRELAVQIAEELRKLGKNLGGL 129 (513)
T ss_pred CCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHH-HhcccccCCCceEEECCCHHHHHHHHHHHHHHHhhcCCc
Confidence 69999999999999999 999999999999999999844 55 32 2 8999999999999999999999999 89
Q ss_pred eEEEEcCCCCHHHHHh--ccCCCeEEECCCcchhhHHHHhhccchhhhhccCCCCceEEEeecchhhhhccCCCceeccC
Q 002515 73 SVGLIQRGMIPEERRS--NYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISG 150 (913)
Q Consensus 73 sv~~i~~~~~~~~r~~--aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~tPLiiSg 150 (913)
++.+++|+++...+.. .-++||++|||+++ . |++... ...+. .+.++|+||||.|| |.+
T Consensus 130 ~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRl-l----D~i~~~--~l~l~---~v~~lVlDEADrmL-d~G-------- 190 (513)
T COG0513 130 RVAVVYGGVSIRKQIEALKRGVDIVVATPGRL-L----DLIKRG--KLDLS---GVETLVLDEADRML-DMG-------- 190 (513)
T ss_pred cEEEEECCCCHHHHHHHHhcCCCEEEECccHH-H----HHHHcC--Ccchh---hcCEEEeccHhhhh-cCC--------
Confidence 9999999988554433 33599999999996 3 444433 23445 89999999999999 544
Q ss_pred CCCCCccchHHHHHHHHHhccCCCeEEeCCCCeeeccHhhHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHhhccCcce
Q 002515 151 EASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQY 230 (913)
Q Consensus 151 ~~~~~~~~y~~~~~~v~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~l~~~i~~Al~A~~l~~~d~dY 230 (913)
+...+..+...+.. ++++. +||++.+- . |.. + |..++. ++
T Consensus 191 -------f~~~i~~I~~~~p~---------~~qtl-----------------lfSAT~~~-~-i~~-l-~~~~l~---~p 230 (513)
T COG0513 191 -------FIDDIEKILKALPP---------DRQTL-----------------LFSATMPD-D-IRE-L-ARRYLN---DP 230 (513)
T ss_pred -------CHHHHHHHHHhCCc---------ccEEE-----------------EEecCCCH-H-HHH-H-HHHHcc---CC
Confidence 44577888887754 56666 78876533 1 222 1 222222 11
Q ss_pred EEECCeEEEEeCCCCccccCcccChhhhHHHHhHhCCcccCCce--eeeeeeehhHHhhcCcccccCCCcccHHHHHHHH
Q 002515 231 IVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSV--VVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKM 308 (913)
Q Consensus 231 iV~dg~V~iVD~~TGR~~~gr~ws~GLHQaieaKEgv~i~~e~~--t~a~IT~q~~F~~Y~kL~GmTGTa~te~~Ef~~i 308 (913)
+ .+-|+ ++.. +...|..
T Consensus 231 ~-----~i~v~-----------------------------~~~~~~~~~~i~q--------------------------- 249 (513)
T COG0513 231 V-----EIEVS-----------------------------VEKLERTLKKIKQ--------------------------- 249 (513)
T ss_pred c-----EEEEc-----------------------------cccccccccCceE---------------------------
Confidence 1 11111 1111 1122211
Q ss_pred hCCCeEEeCCCCCcccccCCCeEEeChh-HHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEeccCC
Q 002515 309 FQMPVIEVPTNLPNIRVDLPIQSFATAR-GKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARP 387 (913)
Q Consensus 309 Y~l~vv~IPt~~p~~R~d~~d~v~~t~~-~k~~aii~ei~~~~~~grPVLI~t~Si~~SE~ls~~L~~~gi~~~vLnA~~ 387 (913)
..++.... +|+..+...+... .. ..+||||++...++.|+..|...|+++..||++.
T Consensus 250 --------------------~~~~v~~~~~k~~~L~~ll~~~-~~-~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l 307 (513)
T COG0513 250 --------------------FYLEVESEEEKLELLLKLLKDE-DE-GRVIVFVRTKRLVEELAESLRKRGFKVAALHGDL 307 (513)
T ss_pred --------------------EEEEeCCHHHHHHHHHHHHhcC-CC-CeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCC
Confidence 11233333 4777766555432 22 2599999999999999999999999999999987
Q ss_pred cchhhHHHHHH-hcCCCccEEEEcCCCCCCccee
Q 002515 388 KYAAREAETVA-QAGRKYAITISTNMAGRGTDII 420 (913)
Q Consensus 388 k~~~~Ea~Iia-~AG~~G~VTIATnmAGRGTDIk 420 (913)
.+.+|+..+-. +.| .-.|.|||+.|+||.||.
T Consensus 308 ~q~~R~~~l~~F~~g-~~~vLVaTDvaaRGiDi~ 340 (513)
T COG0513 308 PQEERDRALEKFKDG-ELRVLVATDVAARGLDIP 340 (513)
T ss_pred CHHHHHHHHHHHHcC-CCCEEEEechhhccCCcc
Confidence 67777766555 556 568999999999999995
No 26
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=99.94 E-value=4.1e-25 Score=254.92 Aligned_cols=274 Identities=20% Similarity=0.231 Sum_probs=179.7
Q ss_pred CCchhHHHHHHHHhcCC--eEEecCCCchHHHHHHHHHHHHHcC---------CcEEEEecCHHHHHHHHHHHHHHhhhc
Q 002515 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALTG---------EGVHVVTVNDYLAQRDAEWMERVHRFL 70 (913)
Q Consensus 2 rp~dvQl~g~l~L~~G~--IaEm~TGEGKTLva~lpa~l~AL~G---------~~VhVvT~NdyLA~RDae~~~~~y~~L 70 (913)
.|+++|..+...+++|+ |+.+.||+|||++|++|++-..+.+ ..|.|++|+.+||.+-.+.+..+...+
T Consensus 23 ~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~~~~~~~~~ 102 (456)
T PRK10590 23 EPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYL 102 (456)
T ss_pred CCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEEeCcHHHHHHHHHHHHHHhccC
Confidence 69999999999999988 9999999999999999997332221 258999999999999999999999999
Q ss_pred CCeEEEEcCCCCHHHH--HhccCCCeEEECCCcchhhHHHHhhccchhhhhccCCCCceEEEeecchhhhhccCCCceec
Q 002515 71 GLSVGLIQRGMIPEER--RSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLI 148 (913)
Q Consensus 71 GLsv~~i~~~~~~~~r--~~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~tPLii 148 (913)
++.+..+.++.+.... +..-.+||+++|++.| .|.+..+ ...+. .++++||||||.|+ |.+
T Consensus 103 ~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL-~~~~~~~------~~~l~---~v~~lViDEah~ll-~~~------ 165 (456)
T PRK10590 103 NIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRL-LDLEHQN------AVKLD---QVEILVLDEADRML-DMG------ 165 (456)
T ss_pred CCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHH-HHHHHcC------Ccccc---cceEEEeecHHHHh-ccc------
Confidence 9999999988775433 2233579999999986 3333221 12234 79999999999987 321
Q ss_pred cCCCCCCccchHHHHHHHHHhccCCCeEEeCCCCeeeccHhhHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHhhccCc
Q 002515 149 SGEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDV 228 (913)
Q Consensus 149 Sg~~~~~~~~y~~~~~~v~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~l~~~i~~Al~A~~l~~~d~ 228 (913)
++..+..+...+.. .+++.
T Consensus 166 ---------~~~~i~~il~~l~~---------~~q~l------------------------------------------- 184 (456)
T PRK10590 166 ---------FIHDIRRVLAKLPA---------KRQNL------------------------------------------- 184 (456)
T ss_pred ---------cHHHHHHHHHhCCc---------cCeEE-------------------------------------------
Confidence 22233333333321 11221
Q ss_pred ceEEECCeEEEEeCCCCccccCcccChhhhHHHHhHhCCcccCCceeeeeeeehhHHhhcCcccccCCCcccHHHHHHH-
Q 002515 229 QYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLK- 307 (913)
Q Consensus 229 dYiV~dg~V~iVD~~TGR~~~gr~ws~GLHQaieaKEgv~i~~e~~t~a~IT~q~~F~~Y~kL~GmTGTa~te~~Ef~~- 307 (913)
++|+|...+..++..
T Consensus 185 ----------------------------------------------------------------~~SAT~~~~~~~l~~~ 200 (456)
T PRK10590 185 ----------------------------------------------------------------LFSATFSDDIKALAEK 200 (456)
T ss_pred ----------------------------------------------------------------EEeCCCcHHHHHHHHH
Confidence 233333322222221
Q ss_pred HhCCC-eEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEeccC
Q 002515 308 MFQMP-VIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNAR 386 (913)
Q Consensus 308 iY~l~-vv~IPt~~p~~R~d~~d~v~~t~~~k~~aii~ei~~~~~~grPVLI~t~Si~~SE~ls~~L~~~gi~~~vLnA~ 386 (913)
+.+-. .+.++........-.....+.+...|... +..+... ....++||||+|...++.+++.|...|+++..+|++
T Consensus 201 ~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~-l~~l~~~-~~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~ 278 (456)
T PRK10590 201 LLHNPLEIEVARRNTASEQVTQHVHFVDKKRKREL-LSQMIGK-GNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGN 278 (456)
T ss_pred HcCCCeEEEEecccccccceeEEEEEcCHHHHHHH-HHHHHHc-CCCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECC
Confidence 11111 11111100000000111223444444433 3333322 345789999999999999999999999999999997
Q ss_pred CcchhhHHHHHH-hcCCCccEEEEcCCCCCCccee
Q 002515 387 PKYAAREAETVA-QAGRKYAITISTNMAGRGTDII 420 (913)
Q Consensus 387 ~k~~~~Ea~Iia-~AG~~G~VTIATnmAGRGTDIk 420 (913)
..+.+++..+-+ +.| ...|.|||++++||+||.
T Consensus 279 ~~~~~R~~~l~~F~~g-~~~iLVaTdv~~rGiDip 312 (456)
T PRK10590 279 KSQGARTRALADFKSG-DIRVLVATDIAARGLDIE 312 (456)
T ss_pred CCHHHHHHHHHHHHcC-CCcEEEEccHHhcCCCcc
Confidence 655555544443 556 457999999999999994
No 27
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=99.94 E-value=6.3e-25 Score=257.31 Aligned_cols=274 Identities=16% Similarity=0.222 Sum_probs=185.4
Q ss_pred CCchhHHHHHHHHhcCC--eEEecCCCchHHHHHHHHHHHHH----------cCCcEEEEecCHHHHHHHHHHHHHHhhh
Q 002515 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNAL----------TGEGVHVVTVNDYLAQRDAEWMERVHRF 69 (913)
Q Consensus 2 rp~dvQl~g~l~L~~G~--IaEm~TGEGKTLva~lpa~l~AL----------~G~~VhVvT~NdyLA~RDae~~~~~y~~ 69 (913)
.|+|+|..+...+++|+ |+.+.||+|||++|.+|++.+.+ .|..+.|++|+..||.+-.+.+..+...
T Consensus 143 ~ptpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLIL~PTreLa~Qi~~~~~~l~~~ 222 (518)
T PLN00206 143 FPTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVLTPTRELCVQVEDQAKVLGKG 222 (518)
T ss_pred CCCHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceEEEEeCCHHHHHHHHHHHHHHhCC
Confidence 59999999999999998 99999999999999999975543 2456899999999999999999999999
Q ss_pred cCCeEEEEcCCCCHHHH--HhccCCCeEEECCCcchhhHHHHhhccchhhhhccCCCCceEEEeecchhhhhccCCCcee
Q 002515 70 LGLSVGLIQRGMIPEER--RSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLL 147 (913)
Q Consensus 70 LGLsv~~i~~~~~~~~r--~~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~tPLi 147 (913)
+++++.++.++.+.... +..-++||+++|++.| .|+|..+ ...++ .+.++||||||.|+ |.+
T Consensus 223 ~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL-~~~l~~~------~~~l~---~v~~lViDEad~ml-~~g----- 286 (518)
T PLN00206 223 LPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRL-IDLLSKH------DIELD---NVSVLVLDEVDCML-ERG----- 286 (518)
T ss_pred CCceEEEEECCcchHHHHHHhcCCCCEEEECHHHH-HHHHHcC------Cccch---heeEEEeecHHHHh-hcc-----
Confidence 99999888877653332 3344689999999986 4555433 12344 78999999999987 321
Q ss_pred ccCCCCCCccchHHHHHHHHHhccCCCeEEeCCCCeeeccHhhHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHhhccC
Q 002515 148 ISGEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRD 227 (913)
Q Consensus 148 iSg~~~~~~~~y~~~~~~v~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~l~~~i~~Al~A~~l~~~d 227 (913)
+...+..+...+. ..
T Consensus 287 ----------f~~~i~~i~~~l~----------~~--------------------------------------------- 301 (518)
T PLN00206 287 ----------FRDQVMQIFQALS----------QP--------------------------------------------- 301 (518)
T ss_pred ----------hHHHHHHHHHhCC----------CC---------------------------------------------
Confidence 1122222222221 01
Q ss_pred cceEEECCeEEEEeCCCCccccCcccChhhhHHHHhHhCCcccCCceeeeeeeehhHHhhcCcccccCCCcccHHHHHHH
Q 002515 228 VQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLK 307 (913)
Q Consensus 228 ~dYiV~dg~V~iVD~~TGR~~~gr~ws~GLHQaieaKEgv~i~~e~~t~a~IT~q~~F~~Y~kL~GmTGTa~te~~Ef~~ 307 (913)
.+.++|+|+..+.+.+.+
T Consensus 302 --------------------------------------------------------------q~l~~SATl~~~v~~l~~ 319 (518)
T PLN00206 302 --------------------------------------------------------------QVLLFSATVSPEVEKFAS 319 (518)
T ss_pred --------------------------------------------------------------cEEEEEeeCCHHHHHHHH
Confidence 123444454443333333
Q ss_pred HhCCCeEEeC---CCCCcccccCCCeEEeChhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHH-CCCCeEEe
Q 002515 308 MFQMPVIEVP---TNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQ-QGIPHNVL 383 (913)
Q Consensus 308 iY~l~vv~IP---t~~p~~R~d~~d~v~~t~~~k~~aii~ei~~~~~~grPVLI~t~Si~~SE~ls~~L~~-~gi~~~vL 383 (913)
.+..+.+.|. .+.+. .......++.....|...+.+.+........|+||||+|...++.+++.|.. .|+++..+
T Consensus 320 ~~~~~~~~i~~~~~~~~~-~~v~q~~~~~~~~~k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~ 398 (518)
T PLN00206 320 SLAKDIILISIGNPNRPN-KAVKQLAIWVETKQKKQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVVTGLKALSI 398 (518)
T ss_pred HhCCCCEEEEeCCCCCCC-cceeEEEEeccchhHHHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhccCcceEEe
Confidence 3322222111 11111 1111223345555566666655554333446899999999999999999975 68999999
Q ss_pred ccCCcchhhHHHHHH-hcCCCccEEEEcCCCCCCccee
Q 002515 384 NARPKYAAREAETVA-QAGRKYAITISTNMAGRGTDII 420 (913)
Q Consensus 384 nA~~k~~~~Ea~Iia-~AG~~G~VTIATnmAGRGTDIk 420 (913)
|++..+.+|+..+-. ++|. -.|.|||+.|+||+||.
T Consensus 399 Hg~~~~~eR~~il~~Fr~G~-~~ILVaTdvl~rGiDip 435 (518)
T PLN00206 399 HGEKSMKERREVMKSFLVGE-VPVIVATGVLGRGVDLL 435 (518)
T ss_pred eCCCCHHHHHHHHHHHHCCC-CCEEEEecHhhccCCcc
Confidence 997555555543333 6674 47899999999999994
No 28
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.94 E-value=1.3e-24 Score=257.18 Aligned_cols=279 Identities=19% Similarity=0.215 Sum_probs=186.1
Q ss_pred CCchhHHHHHHHHhcCC--eEEecCCCchHHHHHHHHHHHHHc----------CCcEEEEecCHHHHHHHHHHHHHHhhh
Q 002515 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALT----------GEGVHVVTVNDYLAQRDAEWMERVHRF 69 (913)
Q Consensus 2 rp~dvQl~g~l~L~~G~--IaEm~TGEGKTLva~lpa~l~AL~----------G~~VhVvT~NdyLA~RDae~~~~~y~~ 69 (913)
.|+++|..+++.+++|+ |+++.||+|||++|++|++-.-+. +..|.|++|+.+||.+-++.+..|...
T Consensus 31 ~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raLIl~PTreLa~Qi~~~~~~l~~~ 110 (572)
T PRK04537 31 RCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGAD 110 (572)
T ss_pred CCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEEEEeCcHHHHHHHHHHHHHHhcc
Confidence 69999999999999998 999999999999999999733221 347999999999999999999999999
Q ss_pred cCCeEEEEcCCCCHHHHHhcc--CCCeEEECCCcchhhHHHHhhccchhhhhccCCCCceEEEeecchhhhhccCCCcee
Q 002515 70 LGLSVGLIQRGMIPEERRSNY--RCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLL 147 (913)
Q Consensus 70 LGLsv~~i~~~~~~~~r~~aY--~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~tPLi 147 (913)
+|++|+.++++.+...+.... .+||+++|++.| +++|+.+-. ..+. .+.++||||||.|+ |.+
T Consensus 111 ~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL-~~~l~~~~~-----~~l~---~v~~lViDEAh~ll-d~g----- 175 (572)
T PRK04537 111 LGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRL-IDYVKQHKV-----VSLH---ACEICVLDEADRMF-DLG----- 175 (572)
T ss_pred CCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHH-HHHHHhccc-----cchh---heeeeEecCHHHHh-hcc-----
Confidence 999999999988766554433 479999999986 555543211 1133 78899999999987 432
Q ss_pred ccCCCCCCccchHHHHHHHHHhccCCCeEEeCCCCeeeccHhhHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHhhccC
Q 002515 148 ISGEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRD 227 (913)
Q Consensus 148 iSg~~~~~~~~y~~~~~~v~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~l~~~i~~Al~A~~l~~~d 227 (913)
++..+..+...+... ..+++. +|+++.. ..+... +...+...
T Consensus 176 ----------f~~~i~~il~~lp~~-------~~~q~l-----------------l~SATl~--~~v~~l--~~~~l~~p 217 (572)
T PRK04537 176 ----------FIKDIRFLLRRMPER-------GTRQTL-----------------LFSATLS--HRVLEL--AYEHMNEP 217 (572)
T ss_pred ----------hHHHHHHHHHhcccc-------cCceEE-----------------EEeCCcc--HHHHHH--HHHHhcCC
Confidence 233444444444321 122333 3444321 111111 11111111
Q ss_pred cceEEECCeEEEEeCCCCccccCcccChhhhHHHHhHhCCcccCCceeeeeeeehhHHhhcCcccccCCCcccHHHHHHH
Q 002515 228 VQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLK 307 (913)
Q Consensus 228 ~dYiV~dg~V~iVD~~TGR~~~gr~ws~GLHQaieaKEgv~i~~e~~t~a~IT~q~~F~~Y~kL~GmTGTa~te~~Ef~~ 307 (913)
... +++. ++.+..
T Consensus 218 ~~i--------~v~~-----------------------------~~~~~~------------------------------ 230 (572)
T PRK04537 218 EKL--------VVET-----------------------------ETITAA------------------------------ 230 (572)
T ss_pred cEE--------Eecc-----------------------------cccccc------------------------------
Confidence 000 0100 000000
Q ss_pred HhCCCeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEeccCC
Q 002515 308 MFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARP 387 (913)
Q Consensus 308 iY~l~vv~IPt~~p~~R~d~~d~v~~t~~~k~~aii~ei~~~~~~grPVLI~t~Si~~SE~ls~~L~~~gi~~~vLnA~~ 387 (913)
......++....+|...++..+.. ..+.++||||+|+..++.+++.|...|+++..+|++.
T Consensus 231 -----------------~i~q~~~~~~~~~k~~~L~~ll~~--~~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l 291 (572)
T PRK04537 231 -----------------RVRQRIYFPADEEKQTLLLGLLSR--SEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDV 291 (572)
T ss_pred -----------------ceeEEEEecCHHHHHHHHHHHHhc--ccCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 000112234455666665554443 4678999999999999999999999999999999975
Q ss_pred cchhhHHHHHH-hcCCCccEEEEcCCCCCCccee
Q 002515 388 KYAAREAETVA-QAGRKYAITISTNMAGRGTDII 420 (913)
Q Consensus 388 k~~~~Ea~Iia-~AG~~G~VTIATnmAGRGTDIk 420 (913)
.+.+++..+-. +.| ...|.|||++++||+||.
T Consensus 292 ~~~eR~~il~~Fr~G-~~~VLVaTdv~arGIDip 324 (572)
T PRK04537 292 PQKKRESLLNRFQKG-QLEILVATDVAARGLHID 324 (572)
T ss_pred CHHHHHHHHHHHHcC-CCeEEEEehhhhcCCCcc
Confidence 55555533333 555 458999999999999994
No 29
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.93 E-value=4.7e-25 Score=240.78 Aligned_cols=277 Identities=22% Similarity=0.220 Sum_probs=199.8
Q ss_pred CCCchhHHHHHHHHhcCC--eEEecCCCchHHHHHHHHHHHHHcCC----cEEEEecCHHHHHHHHHHHHHHhhhcCCeE
Q 002515 1 MRHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALTGE----GVHVVTVNDYLAQRDAEWMERVHRFLGLSV 74 (913)
Q Consensus 1 ~rp~dvQl~g~l~L~~G~--IaEm~TGEGKTLva~lpa~l~AL~G~----~VhVvT~NdyLA~RDae~~~~~y~~LGLsv 74 (913)
.+|.++|--++++.|+|+ |+-..||+|||++|+||+. ++|.+. .+.|+||+++||.|.++.+.++-...||.|
T Consensus 82 ~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl-~~LL~~p~~~~~lVLtPtRELA~QI~e~fe~Lg~~iglr~ 160 (476)
T KOG0330|consen 82 KKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPIL-QRLLQEPKLFFALVLTPTRELAQQIAEQFEALGSGIGLRV 160 (476)
T ss_pred CCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHH-HHHHcCCCCceEEEecCcHHHHHHHHHHHHHhccccCeEE
Confidence 479999999999999999 8888999999999999996 888775 689999999999999999999999999999
Q ss_pred EEEcCCCCHHHH--HhccCCCeEEECCCcchhhHHHHhhccchhhhhccCCCCceEEEeecchhhhhccCCCceeccCCC
Q 002515 75 GLIQRGMIPEER--RSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEA 152 (913)
Q Consensus 75 ~~i~~~~~~~~r--~~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~tPLiiSg~~ 152 (913)
.++.||++.... ...-..+|+++|++++ .|++.... ..-++ .+.|+|+||||.+|-++ +
T Consensus 161 ~~lvGG~~m~~q~~~L~kkPhilVaTPGrL-----~dhl~~Tk-gf~le---~lk~LVlDEADrlLd~d-F--------- 221 (476)
T KOG0330|consen 161 AVLVGGMDMMLQANQLSKKPHILVATPGRL-----WDHLENTK-GFSLE---QLKFLVLDEADRLLDMD-F--------- 221 (476)
T ss_pred EEEecCchHHHHHHHhhcCCCEEEeCcHHH-----HHHHHhcc-CccHH---HhHHHhhchHHhhhhhh-h---------
Confidence 999999885544 3455679999999995 56654321 22344 78899999999998443 2
Q ss_pred CCCccchHHHHHHHHHhccCCCeEEeCCCCeeeccHhhHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHhhccCcceEE
Q 002515 153 SKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIV 232 (913)
Q Consensus 153 ~~~~~~y~~~~~~v~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~l~~~i~~Al~A~~l~~~d~dYiV 232 (913)
-+.++.|.+.+.. +++.+ ||+++.+- -+....+|.- |-.|
T Consensus 222 ------~~~ld~ILk~ip~---------erqt~-----------------LfsATMt~--kv~kL~rasl------~~p~ 261 (476)
T KOG0330|consen 222 ------EEELDYILKVIPR---------ERQTF-----------------LFSATMTK--KVRKLQRASL------DNPV 261 (476)
T ss_pred ------HHHHHHHHHhcCc---------cceEE-----------------EEEeecch--hhHHHHhhcc------CCCe
Confidence 2466777766643 45555 56665421 1111111100 0000
Q ss_pred ECCeEEEEeCCCCccccCcccChhhhHHHHhHhCCcccCCceeeeeeeehhHHhhcCcccccCCCcccHHHHHHHHhCCC
Q 002515 233 RNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMP 312 (913)
Q Consensus 233 ~dg~V~iVD~~TGR~~~gr~ws~GLHQaieaKEgv~i~~e~~t~a~IT~q~~F~~Y~kL~GmTGTa~te~~Ef~~iY~l~ 312 (913)
.+.- .-+||-+. -+.+
T Consensus 262 -----~v~~-------------s~ky~tv~-----------------------------------------~lkQ----- 277 (476)
T KOG0330|consen 262 -----KVAV-------------SSKYQTVD-----------------------------------------HLKQ----- 277 (476)
T ss_pred -----EEec-------------cchhcchH-----------------------------------------Hhhh-----
Confidence 0000 00111100 0011
Q ss_pred eEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEeccCCcchhh
Q 002515 313 VIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAR 392 (913)
Q Consensus 313 vv~IPt~~p~~R~d~~d~v~~t~~~k~~aii~ei~~~~~~grPVLI~t~Si~~SE~ls~~L~~~gi~~~vLnA~~k~~~~ 392 (913)
..+|.....|-..++..+++ ..|.|++|||++...++.+|-.|...|+.|--||+...+..|
T Consensus 278 ----------------~ylfv~~k~K~~yLV~ll~e--~~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~R 339 (476)
T KOG0330|consen 278 ----------------TYLFVPGKDKDTYLVYLLNE--LAGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKR 339 (476)
T ss_pred ----------------heEeccccccchhHHHHHHh--hcCCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHH
Confidence 12344445566677776665 578999999999999999999999999999999997556666
Q ss_pred HHHHHH-hcCCCccEEEEcCCCCCCccee
Q 002515 393 EAETVA-QAGRKYAITISTNMAGRGTDII 420 (913)
Q Consensus 393 Ea~Iia-~AG~~G~VTIATnmAGRGTDIk 420 (913)
....-. +|| .-.|.|||+.|.||.||.
T Consensus 340 lg~l~~Fk~~-~r~iLv~TDVaSRGLDip 367 (476)
T KOG0330|consen 340 LGALNKFKAG-ARSILVCTDVASRGLDIP 367 (476)
T ss_pred HHHHHHHhcc-CCcEEEecchhcccCCCC
Confidence 655555 888 568999999999999995
No 30
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=99.93 E-value=5.2e-24 Score=245.69 Aligned_cols=274 Identities=19% Similarity=0.213 Sum_probs=183.1
Q ss_pred CCchhHHHHHHHHhcCC--eEEecCCCchHHHHHHHHHHHHHcC----CcEEEEecCHHHHHHHHHHHHHHhhhc-CCeE
Q 002515 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALTG----EGVHVVTVNDYLAQRDAEWMERVHRFL-GLSV 74 (913)
Q Consensus 2 rp~dvQl~g~l~L~~G~--IaEm~TGEGKTLva~lpa~l~AL~G----~~VhVvT~NdyLA~RDae~~~~~y~~L-GLsv 74 (913)
.|+|+|..+...+.+|+ |+.+.||+|||++|.+|+. ..|.. ..+.|++|+..||.+-++++..+...+ ++++
T Consensus 26 ~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil-~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~v 104 (460)
T PRK11776 26 EMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLL-QKLDVKRFRVQALVLCPTRELADQVAKEIRRLARFIPNIKV 104 (460)
T ss_pred CCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHH-HHhhhccCCceEEEEeCCHHHHHHHHHHHHHHHhhCCCcEE
Confidence 48999999999999998 9999999999999999986 55532 268999999999999999999998765 8999
Q ss_pred EEEcCCCCHHHHHh--ccCCCeEEECCCcchhhHHHHhhccchhhhhccCCCCceEEEeecchhhhhccCCCceeccCCC
Q 002515 75 GLIQRGMIPEERRS--NYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEA 152 (913)
Q Consensus 75 ~~i~~~~~~~~r~~--aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~tPLiiSg~~ 152 (913)
..++++.+...+.. .-.+||++||++.| .|+|+.. ..... .+.++|+||||.|+ |.+
T Consensus 105 ~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl-~~~l~~~------~~~l~---~l~~lViDEad~~l-~~g---------- 163 (460)
T PRK11776 105 LTLCGGVPMGPQIDSLEHGAHIIVGTPGRI-LDHLRKG------TLDLD---ALNTLVLDEADRML-DMG---------- 163 (460)
T ss_pred EEEECCCChHHHHHHhcCCCCEEEEChHHH-HHHHHcC------CccHH---HCCEEEEECHHHHh-CcC----------
Confidence 99999887654433 34579999999886 3444321 12234 78999999999987 331
Q ss_pred CCCccchHHHHHHHHHhccCCCeEEeCCCCeeeccHhhHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHhhccCcceEE
Q 002515 153 SKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIV 232 (913)
Q Consensus 153 ~~~~~~y~~~~~~v~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~l~~~i~~Al~A~~l~~~d~dYiV 232 (913)
++..+..+...+.+ .+++. +|+++.+ ..+... +..++...
T Consensus 164 -----~~~~l~~i~~~~~~---------~~q~l-----------------l~SAT~~--~~~~~l--~~~~~~~~----- 203 (460)
T PRK11776 164 -----FQDAIDAIIRQAPA---------RRQTL-----------------LFSATYP--EGIAAI--SQRFQRDP----- 203 (460)
T ss_pred -----cHHHHHHHHHhCCc---------ccEEE-----------------EEEecCc--HHHHHH--HHHhcCCC-----
Confidence 33445555554432 23332 2333321 111110 11111100
Q ss_pred ECCeEEEEeCCCCccccCcccChhhhHHHHhHhCCcccCCceeeeeeeehhHHhhcCcccccCCCcccHHHHHHHHhCCC
Q 002515 233 RNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMP 312 (913)
Q Consensus 233 ~dg~V~iVD~~TGR~~~gr~ws~GLHQaieaKEgv~i~~e~~t~a~IT~q~~F~~Y~kL~GmTGTa~te~~Ef~~iY~l~ 312 (913)
..
T Consensus 204 ---~~--------------------------------------------------------------------------- 205 (460)
T PRK11776 204 ---VE--------------------------------------------------------------------------- 205 (460)
T ss_pred ---EE---------------------------------------------------------------------------
Confidence 00
Q ss_pred eEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEeccCCcchhh
Q 002515 313 VIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAR 392 (913)
Q Consensus 313 vv~IPt~~p~~R~d~~d~v~~t~~~k~~aii~ei~~~~~~grPVLI~t~Si~~SE~ls~~L~~~gi~~~vLnA~~k~~~~ 392 (913)
+.+++..+..... ...+.....+|+.++...+.. ..+.++||||++.+.++.+++.|.+.|+++..+|++..+.++
T Consensus 206 -i~~~~~~~~~~i~-~~~~~~~~~~k~~~l~~ll~~--~~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR 281 (460)
T PRK11776 206 -VKVESTHDLPAIE-QRFYEVSPDERLPALQRLLLH--HQPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDR 281 (460)
T ss_pred -EEECcCCCCCCee-EEEEEeCcHHHHHHHHHHHHh--cCCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHH
Confidence 1111100000000 001122334577776665543 346789999999999999999999999999999997655556
Q ss_pred HHHHHH-hcCCCccEEEEcCCCCCCccee
Q 002515 393 EAETVA-QAGRKYAITISTNMAGRGTDII 420 (913)
Q Consensus 393 Ea~Iia-~AG~~G~VTIATnmAGRGTDIk 420 (913)
+..+.. +.| ...|.|||++|+||.||.
T Consensus 282 ~~~l~~F~~g-~~~vLVaTdv~~rGiDi~ 309 (460)
T PRK11776 282 DQVLVRFANR-SCSVLVATDVAARGLDIK 309 (460)
T ss_pred HHHHHHHHcC-CCcEEEEecccccccchh
Confidence 544443 556 458999999999999994
No 31
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=99.93 E-value=1.2e-23 Score=240.67 Aligned_cols=273 Identities=21% Similarity=0.214 Sum_probs=181.3
Q ss_pred CCchhHHHHHHHHhcCC--eEEecCCCchHHHHHHHHHHHHHc-------CCcEEEEecCHHHHHHHHHHHHHHhhhcCC
Q 002515 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALT-------GEGVHVVTVNDYLAQRDAEWMERVHRFLGL 72 (913)
Q Consensus 2 rp~dvQl~g~l~L~~G~--IaEm~TGEGKTLva~lpa~l~AL~-------G~~VhVvT~NdyLA~RDae~~~~~y~~LGL 72 (913)
.|+++|.-+...+.+|+ |+.+.||.|||++|++|+.-.-+. +..|.|++|+.+||.+-++++..+..++|+
T Consensus 23 ~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~Pt~eLa~Q~~~~~~~l~~~~~~ 102 (434)
T PRK11192 23 RPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTPTRELAMQVADQARELAKHTHL 102 (434)
T ss_pred CCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECCcHHHHHHHHHHHHHHHccCCc
Confidence 58999999999999887 999999999999999999733221 247999999999999999999999999999
Q ss_pred eEEEEcCCCCHHHHHhcc--CCCeEEECCCcchhhHHHHhhccchhhhhccCCCCceEEEeecchhhhhccCCCceeccC
Q 002515 73 SVGLIQRGMIPEERRSNY--RCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISG 150 (913)
Q Consensus 73 sv~~i~~~~~~~~r~~aY--~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~tPLiiSg 150 (913)
+++.++++.+...+...+ ++||++||++.| ++++..+ ....+ .+.++||||||.|+ |.+
T Consensus 103 ~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl-~~~~~~~------~~~~~---~v~~lViDEah~~l-~~~-------- 163 (434)
T PRK11192 103 DIATITGGVAYMNHAEVFSENQDIVVATPGRL-LQYIKEE------NFDCR---AVETLILDEADRML-DMG-------- 163 (434)
T ss_pred EEEEEECCCCHHHHHHHhcCCCCEEEEChHHH-HHHHHcC------CcCcc---cCCEEEEECHHHHh-CCC--------
Confidence 999999998766555444 479999999986 4555322 12234 78999999999987 321
Q ss_pred CCCCCccchHHHHHHHHHhccCCCeEEeCCCCeeeccHhhHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHhhccCcce
Q 002515 151 EASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQY 230 (913)
Q Consensus 151 ~~~~~~~~y~~~~~~v~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~l~~~i~~Al~A~~l~~~d~dY 230 (913)
+...+..+...+.. .++
T Consensus 164 -------~~~~~~~i~~~~~~---------~~q----------------------------------------------- 180 (434)
T PRK11192 164 -------FAQDIETIAAETRW---------RKQ----------------------------------------------- 180 (434)
T ss_pred -------cHHHHHHHHHhCcc---------ccE-----------------------------------------------
Confidence 11122222211110 111
Q ss_pred EEECCeEEEEeCCCCccccCcccChhhhHHHHhHhCCcccCCceeeeeeeehhHHhhcCcccccCCCcccH-HHHHHHHh
Q 002515 231 IVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTE-EKEFLKMF 309 (913)
Q Consensus 231 iV~dg~V~iVD~~TGR~~~gr~ws~GLHQaieaKEgv~i~~e~~t~a~IT~q~~F~~Y~kL~GmTGTa~te-~~Ef~~iY 309 (913)
+.++|+|.... ..+|.+.+
T Consensus 181 ------------------------------------------------------------~~~~SAT~~~~~~~~~~~~~ 200 (434)
T PRK11192 181 ------------------------------------------------------------TLLFSATLEGDAVQDFAERL 200 (434)
T ss_pred ------------------------------------------------------------EEEEEeecCHHHHHHHHHHH
Confidence 23444444321 22332221
Q ss_pred -CCCe-EEeCCCCCcccccCCCeE-EeC-hhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEecc
Q 002515 310 -QMPV-IEVPTNLPNIRVDLPIQS-FAT-ARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNA 385 (913)
Q Consensus 310 -~l~v-v~IPt~~p~~R~d~~d~v-~~t-~~~k~~aii~ei~~~~~~grPVLI~t~Si~~SE~ls~~L~~~gi~~~vLnA 385 (913)
+-.+ +.+.+... .+......+ ..+ ...|...+. .+... ..+.++||||+|.+.++.++..|...|+++..+|+
T Consensus 201 ~~~~~~i~~~~~~~-~~~~i~~~~~~~~~~~~k~~~l~-~l~~~-~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g 277 (434)
T PRK11192 201 LNDPVEVEAEPSRR-ERKKIHQWYYRADDLEHKTALLC-HLLKQ-PEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEG 277 (434)
T ss_pred ccCCEEEEecCCcc-cccCceEEEEEeCCHHHHHHHHH-HHHhc-CCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecC
Confidence 1111 11111111 011111111 122 234444433 33332 35678999999999999999999999999999999
Q ss_pred CCcchhhHHHHHH-hcCCCccEEEEcCCCCCCccee
Q 002515 386 RPKYAAREAETVA-QAGRKYAITISTNMAGRGTDII 420 (913)
Q Consensus 386 ~~k~~~~Ea~Iia-~AG~~G~VTIATnmAGRGTDIk 420 (913)
+..+.+++..+-. +.| ...|.|||++++||+||.
T Consensus 278 ~~~~~~R~~~l~~f~~G-~~~vLVaTd~~~~GiDip 312 (434)
T PRK11192 278 EMVQAKRNEAIKRLTDG-RVNVLVATDVAARGIDID 312 (434)
T ss_pred CCCHHHHHHHHHHHhCC-CCcEEEEccccccCccCC
Confidence 7555566544443 566 457999999999999983
No 32
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=99.93 E-value=1.6e-23 Score=250.02 Aligned_cols=275 Identities=19% Similarity=0.207 Sum_probs=183.8
Q ss_pred CCchhHHHHHHHHhcCC--eEEecCCCchHHHHHHHHHHHHH----cCCcEEEEecCHHHHHHHHHHHHHHhhhc-CCeE
Q 002515 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNAL----TGEGVHVVTVNDYLAQRDAEWMERVHRFL-GLSV 74 (913)
Q Consensus 2 rp~dvQl~g~l~L~~G~--IaEm~TGEGKTLva~lpa~l~AL----~G~~VhVvT~NdyLA~RDae~~~~~y~~L-GLsv 74 (913)
.|+|+|..+...+++|+ |+++.||+|||++|.+|++ ..+ .+..|.|++|+.+||.|-++.+..+...+ |+.+
T Consensus 28 ~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll-~~l~~~~~~~~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v 106 (629)
T PRK11634 28 KPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL-HNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNV 106 (629)
T ss_pred CCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHH-HHhhhccCCCeEEEEeCcHHHHHHHHHHHHHHHhhcCCceE
Confidence 58999999999999988 9999999999999999996 333 34478999999999999999999998877 8999
Q ss_pred EEEcCCCCHHHHHh--ccCCCeEEECCCcchhhHHHHhhccchhhhhccCCCCceEEEeecchhhhhccCCCceeccCCC
Q 002515 75 GLIQRGMIPEERRS--NYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEA 152 (913)
Q Consensus 75 ~~i~~~~~~~~r~~--aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~tPLiiSg~~ 152 (913)
..++++.+.+.+.. .-.++|++||++.| +|+|+.. ...+. .+.++||||||.||-..
T Consensus 107 ~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl-~d~l~r~------~l~l~---~l~~lVlDEAd~ml~~g----------- 165 (629)
T PRK11634 107 VALYGGQRYDVQLRALRQGPQIVVGTPGRL-LDHLKRG------TLDLS---KLSGLVLDEADEMLRMG----------- 165 (629)
T ss_pred EEEECCcCHHHHHHHhcCCCCEEEECHHHH-HHHHHcC------Ccchh---hceEEEeccHHHHhhcc-----------
Confidence 99999887554433 34579999999986 4554321 12234 78999999999997332
Q ss_pred CCCccchHHHHHHHHHhccCCCeEEeCCCCeeeccHhhHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHhhccCcceEE
Q 002515 153 SKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIV 232 (913)
Q Consensus 153 ~~~~~~y~~~~~~v~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~l~~~i~~Al~A~~l~~~d~dYiV 232 (913)
+...+..+...+.. .+++. +|+++.+ ..+.. + ++.++. +...
T Consensus 166 -----f~~di~~Il~~lp~---------~~q~l-----------------lfSAT~p--~~i~~-i-~~~~l~-~~~~-- 207 (629)
T PRK11634 166 -----FIEDVETIMAQIPE---------GHQTA-----------------LFSATMP--EAIRR-I-TRRFMK-EPQE-- 207 (629)
T ss_pred -----cHHHHHHHHHhCCC---------CCeEE-----------------EEEccCC--hhHHH-H-HHHHcC-CCeE--
Confidence 22344444444432 23333 4554431 11111 1 111111 1100
Q ss_pred ECCeEEEEeCCCCccccCcccChhhhHHHHhHhCCcccCCceeeeeeeehhHHhhcCcccccCCCcccHHHHHHHHhCCC
Q 002515 233 RNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMP 312 (913)
Q Consensus 233 ~dg~V~iVD~~TGR~~~gr~ws~GLHQaieaKEgv~i~~e~~t~a~IT~q~~F~~Y~kL~GmTGTa~te~~Ef~~iY~l~ 312 (913)
|.+.. ...+
T Consensus 208 ----i~i~~------------------------------~~~~------------------------------------- 216 (629)
T PRK11634 208 ----VRIQS------------------------------SVTT------------------------------------- 216 (629)
T ss_pred ----EEccC------------------------------cccc-------------------------------------
Confidence 00000 0000
Q ss_pred eEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEeccCCcchhh
Q 002515 313 VIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAR 392 (913)
Q Consensus 313 vv~IPt~~p~~R~d~~d~v~~t~~~k~~aii~ei~~~~~~grPVLI~t~Si~~SE~ls~~L~~~gi~~~vLnA~~k~~~~ 392 (913)
.|.+. ...+......|..++...+.. ....++||||+|...++.+++.|.+.|+.+..||+...+..+
T Consensus 217 -------~~~i~---q~~~~v~~~~k~~~L~~~L~~--~~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R 284 (629)
T PRK11634 217 -------RPDIS---QSYWTVWGMRKNEALVRFLEA--EDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALR 284 (629)
T ss_pred -------CCceE---EEEEEechhhHHHHHHHHHHh--cCCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHH
Confidence 00000 011123344577776655543 344689999999999999999999999999999997555566
Q ss_pred HHHHHH-hcCCCccEEEEcCCCCCCccee
Q 002515 393 EAETVA-QAGRKYAITISTNMAGRGTDII 420 (913)
Q Consensus 393 Ea~Iia-~AG~~G~VTIATnmAGRGTDIk 420 (913)
+..+-. +.| .-.|.|||++|+||+||.
T Consensus 285 ~~il~~Fr~G-~~~ILVATdv~arGIDip 312 (629)
T PRK11634 285 EQTLERLKDG-RLDILIATDVAARGLDVE 312 (629)
T ss_pred HHHHHHHhCC-CCCEEEEcchHhcCCCcc
Confidence 544444 556 457999999999999994
No 33
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.92 E-value=3.2e-23 Score=240.25 Aligned_cols=127 Identities=20% Similarity=0.232 Sum_probs=101.9
Q ss_pred CCchhHHHHHHHHhcCC--eEEecCCCchHHHHHHHHHHHHHc----------CCcEEEEecCHHHHHHHHHHHHHHhhh
Q 002515 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALT----------GEGVHVVTVNDYLAQRDAEWMERVHRF 69 (913)
Q Consensus 2 rp~dvQl~g~l~L~~G~--IaEm~TGEGKTLva~lpa~l~AL~----------G~~VhVvT~NdyLA~RDae~~~~~y~~ 69 (913)
.||++|..+...+++|+ |+...||+|||++|.+|++-..+. +..+.|++|+..||.+.++.+..+...
T Consensus 109 ~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~aLil~PtreLa~Q~~~~~~~l~~~ 188 (475)
T PRK01297 109 YCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAALTKY 188 (475)
T ss_pred CCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceEEEEeCcHHHHHHHHHHHHHhhcc
Confidence 58999999999999998 999999999999999999744343 246899999999999999999999999
Q ss_pred cCCeEEEEcCCCCHHHH--Hh-ccCCCeEEECCCcchhhHHHHhhccchhhhhccCCCCceEEEeecchhhh
Q 002515 70 LGLSVGLIQRGMIPEER--RS-NYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (913)
Q Consensus 70 LGLsv~~i~~~~~~~~r--~~-aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiL 138 (913)
+|+.+..+.++.+.... .. .-.+||+++|++.| .++ +... ...++ .+.++||||+|.++
T Consensus 189 ~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~L-l~~----~~~~--~~~l~---~l~~lViDEah~l~ 250 (475)
T PRK01297 189 TGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRL-LDF----NQRG--EVHLD---MVEVMVLDEADRML 250 (475)
T ss_pred CCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHH-HHH----HHcC--Ccccc---cCceEEechHHHHH
Confidence 99999999888663322 22 23579999999876 232 2211 23345 89999999999976
No 34
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.91 E-value=7.2e-22 Score=228.97 Aligned_cols=269 Identities=17% Similarity=0.182 Sum_probs=177.2
Q ss_pred CCchhHHHHHHHHhcCC--eEEecCCCchHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcC
Q 002515 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQR 79 (913)
Q Consensus 2 rp~dvQl~g~l~L~~G~--IaEm~TGEGKTLva~lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLsv~~i~~ 79 (913)
.|+|+|..++.++++|+ ++.|.||.|||+++.+|+.. .+..+.||+|+..|+.+..+.+. .+|+++..+.+
T Consensus 11 ~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~---~~~~~lVi~P~~~L~~dq~~~l~----~~gi~~~~l~~ 83 (470)
T TIGR00614 11 SFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALC---SDGITLVISPLISLMEDQVLQLK----ASGIPATFLNS 83 (470)
T ss_pred CCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHH---cCCcEEEEecHHHHHHHHHHHHH----HcCCcEEEEeC
Confidence 47899999999999988 99999999999999999973 46678999999999987766654 57999999988
Q ss_pred CCCHHHHHhcc------CCCeEEECCCcchhhH-HHHhhccchhhhhccCCCCceEEEeecchhhhhccCCCceeccCCC
Q 002515 80 GMIPEERRSNY------RCDITYTNNSELGFDY-LRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEA 152 (913)
Q Consensus 80 ~~~~~~r~~aY------~~DI~YgT~~e~~fDy-LrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~tPLiiSg~~ 152 (913)
+.+..+++..+ ..+|+|+|+..+.-.. +...+. ... .+.++||||||.++ +-+.
T Consensus 84 ~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~------~~~---~i~~iViDEaH~i~-~~g~--------- 144 (470)
T TIGR00614 84 SQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLE------ERK---GITLIAVDEAHCIS-QWGH--------- 144 (470)
T ss_pred CCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHH------hcC---CcCEEEEeCCcccC-cccc---------
Confidence 88776554433 3689999998753221 122221 123 89999999999985 2100
Q ss_pred CCCccchHHHHHHHHHhccCCCeEEeCCCCeeeccHhhHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHhhccCcceEE
Q 002515 153 SKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIV 232 (913)
Q Consensus 153 ~~~~~~y~~~~~~v~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~l~~~i~~Al~A~~l~~~d~dYiV 232 (913)
.+-+.. ..+.. ++ ..+
T Consensus 145 ----~fr~~~-------------------------------------------------~~l~~-l~--~~~-------- 160 (470)
T TIGR00614 145 ----DFRPDY-------------------------------------------------KALGS-LK--QKF-------- 160 (470)
T ss_pred ----ccHHHH-------------------------------------------------HHHHH-HH--HHc--------
Confidence 000000 00000 00 000
Q ss_pred ECCeEEEEeCCCCccccCcccChhhhHHHHhHhCCcccCCceeeeeeeehhHHhhcCcccccCCCcccHH-HHHHHHhCC
Q 002515 233 RNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEE-KEFLKMFQM 311 (913)
Q Consensus 233 ~dg~V~iVD~~TGR~~~gr~ws~GLHQaieaKEgv~i~~e~~t~a~IT~q~~F~~Y~kL~GmTGTa~te~-~Ef~~iY~l 311 (913)
| -..+.++|+|+.... .++.+..++
T Consensus 161 --------------------------------------~----------------~~~~l~lTAT~~~~~~~di~~~l~l 186 (470)
T TIGR00614 161 --------------------------------------P----------------NVPIMALTATASPSVREDILRQLNL 186 (470)
T ss_pred --------------------------------------C----------------CCceEEEecCCCHHHHHHHHHHcCC
Confidence 0 013568888887643 445555554
Q ss_pred C---eEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEeccCCc
Q 002515 312 P---VIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPK 388 (913)
Q Consensus 312 ~---vv~IPt~~p~~R~d~~d~v~~t~~~k~~aii~ei~~~~~~grPVLI~t~Si~~SE~ls~~L~~~gi~~~vLnA~~k 388 (913)
. ++....++|..+ ..+.......+..+...+.. ...|..+||||.|++.++.++..|.+.|++...+|++..
T Consensus 187 ~~~~~~~~s~~r~nl~----~~v~~~~~~~~~~l~~~l~~-~~~~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~ 261 (470)
T TIGR00614 187 KNPQIFCTSFDRPNLY----YEVRRKTPKILEDLLRFIRK-EFKGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLE 261 (470)
T ss_pred CCCcEEeCCCCCCCcE----EEEEeCCccHHHHHHHHHHH-hcCCCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCC
Confidence 2 333333444332 11112222344455554443 346778899999999999999999999999999999754
Q ss_pred chhhHHHHHH-hcCCCccEEEEcCCCCCCccee
Q 002515 389 YAAREAETVA-QAGRKYAITISTNMAGRGTDII 420 (913)
Q Consensus 389 ~~~~Ea~Iia-~AG~~G~VTIATnmAGRGTDIk 420 (913)
..+|+..+-. +.| .-.|.|||+++|||+|+.
T Consensus 262 ~~eR~~i~~~F~~g-~~~vLVaT~~~~~GID~p 293 (470)
T TIGR00614 262 ISARDDVHHKFQRD-EIQVVVATVAFGMGINKP 293 (470)
T ss_pred HHHHHHHHHHHHcC-CCcEEEEechhhccCCcc
Confidence 4444432222 556 457999999999999994
No 35
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.90 E-value=1.4e-22 Score=219.37 Aligned_cols=279 Identities=22% Similarity=0.231 Sum_probs=189.4
Q ss_pred CCchhHHHHHHHHhcCC--eEEecCCCchHHHHHHHHHHHHHcC----CcEEEEecCHHHHHHHHHHHHHHhhhcCCeEE
Q 002515 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALTG----EGVHVVTVNDYLAQRDAEWMERVHRFLGLSVG 75 (913)
Q Consensus 2 rp~dvQl~g~l~L~~G~--IaEm~TGEGKTLva~lpa~l~AL~G----~~VhVvT~NdyLA~RDae~~~~~y~~LGLsv~ 75 (913)
.|.|||.-|++.++.|+ |...+||+|||.+|+||.+ +-|+- .-..|+||+++||-|.+|.|..+.+.++++|+
T Consensus 29 ~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil-~rLsedP~giFalvlTPTrELA~QiaEQF~alGk~l~lK~~ 107 (442)
T KOG0340|consen 29 KPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPIL-NRLSEDPYGIFALVLTPTRELALQIAEQFIALGKLLNLKVS 107 (442)
T ss_pred CCCchHhhhhHHHhcccccccccccCCCcchhhhHHHH-HhhccCCCcceEEEecchHHHHHHHHHHHHHhcccccceEE
Confidence 59999999999999999 9999999999999999996 88874 45689999999999999999999999999999
Q ss_pred EEcCCCC--HHHHHhccCCCeEEECCCcchhhHHHHhhccchhh--hhccCCCCceEEEeecchhhhhccCCCceeccCC
Q 002515 76 LIQRGMI--PEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQ--LVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGE 151 (913)
Q Consensus 76 ~i~~~~~--~~~r~~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~--~v~r~~R~~~~aIVDEvDsiLiDea~tPLiiSg~ 151 (913)
+|+++++ .+.....-..||+.+|++++ -|++..+.+. .+.. .+.|+++||||.|| +. .-|
T Consensus 108 vivGG~d~i~qa~~L~~rPHvVvatPGRl-----ad~l~sn~~~~~~~~~---rlkflVlDEADrvL-~~-~f~------ 171 (442)
T KOG0340|consen 108 VIVGGTDMIMQAAILSDRPHVVVATPGRL-----ADHLSSNLGVCSWIFQ---RLKFLVLDEADRVL-AG-CFP------ 171 (442)
T ss_pred EEEccHHHhhhhhhcccCCCeEecCcccc-----ccccccCCccchhhhh---ceeeEEecchhhhh-cc-chh------
Confidence 9999976 34445556679999999996 3444444222 2344 79999999999998 21 111
Q ss_pred CCCCccchHHHHHHHHHhccCCCeEEeCCCCeeeccHhhHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHhhccCc--c
Q 002515 152 ASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDV--Q 229 (913)
Q Consensus 152 ~~~~~~~y~~~~~~v~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~l~~~i~~Al~A~~l~~~d~--d 229 (913)
..+..+...+ |+.|+.+ ||++. |...++.+.-+.-.. -
T Consensus 172 --------d~L~~i~e~l---------P~~RQtL-----------------lfSAT------itd~i~ql~~~~i~k~~a 211 (442)
T KOG0340|consen 172 --------DILEGIEECL---------PKPRQTL-----------------LFSAT------ITDTIKQLFGCPITKSIA 211 (442)
T ss_pred --------hHHhhhhccC---------CCccceE-----------------EEEee------hhhHHHHhhcCCcccccc
Confidence 1122222222 3345544 44432 122222222111010 1
Q ss_pred eEEECCeEEEEeCCCCccccCcccChhhhHHHHhHhCCcccCCceeeeeeeehhHHhhcCcccccCCCcccHHHHHHHHh
Q 002515 230 YIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMF 309 (913)
Q Consensus 230 YiV~dg~V~iVD~~TGR~~~gr~ws~GLHQaieaKEgv~i~~e~~t~a~IT~q~~F~~Y~kL~GmTGTa~te~~Ef~~iY 309 (913)
|.+ |+..|+++ ++++ +|
T Consensus 212 ~~~-----------------------------e~~~~vst-vetL------~q--------------------------- 228 (442)
T KOG0340|consen 212 FEL-----------------------------EVIDGVST-VETL------YQ--------------------------- 228 (442)
T ss_pred eEE-----------------------------eccCCCCc-hhhh------hh---------------------------
Confidence 111 11111110 0000 11
Q ss_pred CCCeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHHHh-cCCcEEEEecchhhHHHHHHHHHHCCCCeEEeccCCc
Q 002515 310 QMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFR-LGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPK 388 (913)
Q Consensus 310 ~l~vv~IPt~~p~~R~d~~d~v~~t~~~k~~aii~ei~~~~~-~grPVLI~t~Si~~SE~ls~~L~~~gi~~~vLnA~~k 388 (913)
..|+...+.|-.-++.-+...-+ ....|+||+++...++.|+..|+..++...-||.-..
T Consensus 229 -------------------~yI~~~~~vkdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~ 289 (442)
T KOG0340|consen 229 -------------------GYILVSIDVKDAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMP 289 (442)
T ss_pred -------------------heeecchhhhHHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcch
Confidence 12345555555555554443322 4679999999999999999999999999999998544
Q ss_pred chhhHHHHHH-hcCCCccEEEEcCCCCCCccee
Q 002515 389 YAAREAETVA-QAGRKYAITISTNMAGRGTDII 420 (913)
Q Consensus 389 ~~~~Ea~Iia-~AG~~G~VTIATnmAGRGTDIk 420 (913)
+.+|=+.+-+ +++ .-.|.|||+.|.||.||.
T Consensus 290 Q~eR~~aLsrFrs~-~~~iliaTDVAsRGLDIP 321 (442)
T KOG0340|consen 290 QKERLAALSRFRSN-AARILIATDVASRGLDIP 321 (442)
T ss_pred HHHHHHHHHHHhhc-CccEEEEechhhcCCCCC
Confidence 4455555555 565 568999999999999995
No 36
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.90 E-value=6.5e-23 Score=224.41 Aligned_cols=275 Identities=22% Similarity=0.276 Sum_probs=200.4
Q ss_pred CCchhHHHHHHHHhcCC--eEEecCCCchHHHHHHHHHHHHHc---------CCcEEEEecCHHHHHHHHHHHHHHhhhc
Q 002515 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALT---------GEGVHVVTVNDYLAQRDAEWMERVHRFL 70 (913)
Q Consensus 2 rp~dvQl~g~l~L~~G~--IaEm~TGEGKTLva~lpa~l~AL~---------G~~VhVvT~NdyLA~RDae~~~~~y~~L 70 (913)
+|.|+|-.+.+++++|+ |.-.+||.||||+++||.+++-+. |-+|.|+||++.||.+. |-+...|.+=
T Consensus 242 KPtPIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreLalqi-e~e~~kysyn 320 (629)
T KOG0336|consen 242 KPTPIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTRELALQI-EGEVKKYSYN 320 (629)
T ss_pred CCCcchhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHHHHHHH-HhHHhHhhhc
Confidence 79999999999999999 888889999999999999876433 45899999999999875 5566799999
Q ss_pred CCeEEEEcCCCCHHHHHh--ccCCCeEEECCCcchhhHHHHhhccchhhhhccCCCCceEEEeecchhhhhccCCCceec
Q 002515 71 GLSVGLIQRGMIPEERRS--NYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLI 148 (913)
Q Consensus 71 GLsv~~i~~~~~~~~r~~--aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~tPLii 148 (913)
|+...|++++-+..+..+ .-+.+|+.+||++| -|..-||. ..++ ...|+++||||.|| |.++.|
T Consensus 321 g~ksvc~ygggnR~eqie~lkrgveiiiatPgrl-ndL~~~n~------i~l~---siTYlVlDEADrML-DMgFEp--- 386 (629)
T KOG0336|consen 321 GLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRL-NDLQMDNV------INLA---SITYLVLDEADRML-DMGFEP--- 386 (629)
T ss_pred CcceEEEecCCCchhHHHHHhcCceEEeeCCchH-hhhhhcCe------eeee---eeEEEEecchhhhh-cccccH---
Confidence 999999998866544443 34579999999996 34333332 2345 89999999999999 877766
Q ss_pred cCCCCCCccchHHHHHHHHHhccCCCeEEeCCCCeeeccHhhHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHhhccCc
Q 002515 149 SGEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDV 228 (913)
Q Consensus 149 Sg~~~~~~~~y~~~~~~v~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~l~~~i~~Al~A~~l~~~d~ 228 (913)
++.++.-.+.+ +|++.
T Consensus 387 ------------qIrkilldiRP---------DRqtv------------------------------------------- 402 (629)
T KOG0336|consen 387 ------------QIRKILLDIRP---------DRQTV------------------------------------------- 402 (629)
T ss_pred ------------HHHHHhhhcCC---------cceee-------------------------------------------
Confidence 44444332322 33443
Q ss_pred ceEEECCeEEEEeCCCCccccCcccChhhhHHHH--hHhCCcccCCceeeeeeeehhHHhhcCcccccCCCcccHHHHHH
Q 002515 229 QYIVRNGKALIINELTGRVEEKRRWSEGIHQAVE--AKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFL 306 (913)
Q Consensus 229 dYiV~dg~V~iVD~~TGR~~~gr~ws~GLHQaie--aKEgv~i~~e~~t~a~IT~q~~F~~Y~kL~GmTGTa~te~~Ef~ 306 (913)
|..-+|.+|+|+.-+ .||-+-+-. |+
T Consensus 403 -------------------mTSATWP~~VrrLa~sY~Kep~~v~v------------------------Gs--------- 430 (629)
T KOG0336|consen 403 -------------------MTSATWPEGVRRLAQSYLKEPMIVYV------------------------GS--------- 430 (629)
T ss_pred -------------------eecccCchHHHHHHHHhhhCceEEEe------------------------cc---------
Confidence 334456666666433 122222111 11
Q ss_pred HHhCCCeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEeccC
Q 002515 307 KMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNAR 386 (913)
Q Consensus 307 ~iY~l~vv~IPt~~p~~R~d~~d~v~~t~~~k~~aii~ei~~~~~~grPVLI~t~Si~~SE~ls~~L~~~gi~~~vLnA~ 386 (913)
++.+.+-+-+. ..+..++.+|| +++....+.+...-.|+|||.+.-.++.||.-|.-.||..+-||++
T Consensus 431 ----LdL~a~~sVkQ-------~i~v~~d~~k~-~~~~~f~~~ms~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~ 498 (629)
T KOG0336|consen 431 ----LDLVAVKSVKQ-------NIIVTTDSEKL-EIVQFFVANMSSNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGN 498 (629)
T ss_pred ----cceeeeeeeee-------eEEecccHHHH-HHHHHHHHhcCCCceEEEEEechhhhhhccchhhhcccchhhccCC
Confidence 12222222111 12345677777 5666666777888899999999999999999999999999999998
Q ss_pred CcchhhHHHHHH-hcCCCccEEEEcCCCCCCccee
Q 002515 387 PKYAAREAETVA-QAGRKYAITISTNMAGRGTDII 420 (913)
Q Consensus 387 ~k~~~~Ea~Iia-~AG~~G~VTIATnmAGRGTDIk 420 (913)
.++..+|..+-. +.| .-.|.|||++|.||.|+.
T Consensus 499 r~Q~DrE~al~~~ksG-~vrILvaTDlaSRGlDv~ 532 (629)
T KOG0336|consen 499 REQSDREMALEDFKSG-EVRILVATDLASRGLDVP 532 (629)
T ss_pred hhhhhHHHHHHhhhcC-ceEEEEEechhhcCCCch
Confidence 777788877665 667 558999999999999994
No 37
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.90 E-value=5.7e-22 Score=240.85 Aligned_cols=129 Identities=20% Similarity=0.235 Sum_probs=102.0
Q ss_pred CCchhHHHHHHHHhcCC--eEEecCCCchHHHHHHHHHHHHH-c--CCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEE
Q 002515 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNAL-T--GEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGL 76 (913)
Q Consensus 2 rp~dvQl~g~l~L~~G~--IaEm~TGEGKTLva~lpa~l~AL-~--G~~VhVvT~NdyLA~RDae~~~~~y~~LGLsv~~ 76 (913)
+||++|..+...+.+|+ |+...||+|||++|.||++ .+| . +-.+.+++|+..||.+..+.+..+. ..|++++.
T Consensus 36 ~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL-~~l~~~~~~~aL~l~PtraLa~q~~~~l~~l~-~~~i~v~~ 113 (742)
T TIGR03817 36 RPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVL-SALADDPRATALYLAPTKALAADQLRAVRELT-LRGVRPAT 113 (742)
T ss_pred cCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHH-HHHhhCCCcEEEEEcChHHHHHHHHHHHHHhc-cCCeEEEE
Confidence 69999999999999998 9999999999999999997 554 3 3478999999999999999999886 56899999
Q ss_pred EcCCCCHHHHHhcc-CCCeEEECCCcchhhHHHHhhccchhhhhccCCCCceEEEeecchhhh
Q 002515 77 IQRGMIPEERRSNY-RCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (913)
Q Consensus 77 i~~~~~~~~r~~aY-~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiL 138 (913)
..|+.+.++|+... +++|+++||..+....|.++.. -...++ .+.++||||||.++
T Consensus 114 ~~Gdt~~~~r~~i~~~~~IivtTPd~L~~~~L~~~~~---~~~~l~---~l~~vViDEah~~~ 170 (742)
T TIGR03817 114 YDGDTPTEERRWAREHARYVLTNPDMLHRGILPSHAR---WARFLR---RLRYVVIDECHSYR 170 (742)
T ss_pred EeCCCCHHHHHHHhcCCCEEEEChHHHHHhhccchhH---HHHHHh---cCCEEEEeChhhcc
Confidence 88888877665433 4799999995543223322111 112355 89999999999974
No 38
>PTZ00424 helicase 45; Provisional
Probab=99.90 E-value=2e-21 Score=219.21 Aligned_cols=127 Identities=18% Similarity=0.224 Sum_probs=101.4
Q ss_pred CCchhHHHHHHHHhcCC--eEEecCCCchHHHHHHHHHHHHH---cCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEE
Q 002515 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNAL---TGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGL 76 (913)
Q Consensus 2 rp~dvQl~g~l~L~~G~--IaEm~TGEGKTLva~lpa~l~AL---~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLsv~~ 76 (913)
.|+++|..+...+.+|+ |+.+.||.|||+++.+|+..... .+..+.+++|+..||.+-.+.+..+...+++.+..
T Consensus 50 ~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~ 129 (401)
T PTZ00424 50 KPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYDLNACQALILAPTRELAQQIQKVVLALGDYLKVRCHA 129 (401)
T ss_pred CCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCCCCCceEEEECCCHHHHHHHHHHHHHHhhhcCceEEE
Confidence 58999999999999888 99999999999999999873322 35679999999999999999999999999999988
Q ss_pred EcCCCCHHHHH--hccCCCeEEECCCcchhhHHHHhhccchhhhhccCCCCceEEEeecchhhh
Q 002515 77 IQRGMIPEERR--SNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (913)
Q Consensus 77 i~~~~~~~~r~--~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiL 138 (913)
..++....+.. ..-.+||+++|++.+ ++.++.+ ..... .++++||||||.++
T Consensus 130 ~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l-~~~l~~~------~~~l~---~i~lvViDEah~~~ 183 (401)
T PTZ00424 130 CVGGTVVRDDINKLKAGVHMVVGTPGRV-YDMIDKR------HLRVD---DLKLFILDEADEML 183 (401)
T ss_pred EECCcCHHHHHHHHcCCCCEEEECcHHH-HHHHHhC------Ccccc---cccEEEEecHHHHH
Confidence 87776543332 223479999999886 4444322 12234 79999999999986
No 39
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.90 E-value=2.6e-21 Score=230.83 Aligned_cols=266 Identities=17% Similarity=0.183 Sum_probs=176.1
Q ss_pred CCchhHHHHHHHHhcCC--eEEecCCCchHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcC
Q 002515 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQR 79 (913)
Q Consensus 2 rp~dvQl~g~l~L~~G~--IaEm~TGEGKTLva~lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLsv~~i~~ 79 (913)
.|+|+|..+...+.+|+ ++.|.||.|||+++.+|+.+ .+..+.||+|...|+.+..+.+. .+|+.+.++.+
T Consensus 25 ~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~---~~g~tlVisPl~sL~~dqv~~l~----~~gi~~~~~~s 97 (607)
T PRK11057 25 QFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALV---LDGLTLVVSPLISLMKDQVDQLL----ANGVAAACLNS 97 (607)
T ss_pred CCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHH---cCCCEEEEecHHHHHHHHHHHHH----HcCCcEEEEcC
Confidence 46799999999999888 99999999999999999974 35578999999999988777665 46999999988
Q ss_pred CCCHHHHHhcc------CCCeEEECCCcchhhHHHHhhccchhhhhccCCCCceEEEeecchhhhhccCCCceeccCCCC
Q 002515 80 GMIPEERRSNY------RCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEAS 153 (913)
Q Consensus 80 ~~~~~~r~~aY------~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~tPLiiSg~~~ 153 (913)
+.+.+++...+ ..+|+|+|+..+.-+.+.+.+. .. .+.++||||||.++--. ..
T Consensus 98 ~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~-------~~---~l~~iVIDEaH~i~~~G-~~--------- 157 (607)
T PRK11057 98 TQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLA-------HW---NPALLAVDEAHCISQWG-HD--------- 157 (607)
T ss_pred CCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHh-------hC---CCCEEEEeCcccccccc-Cc---------
Confidence 88776654433 3589999998875333332221 23 68999999999975110 00
Q ss_pred CCccchHHHHHHHHHhccCCCeEEeCCCCeeeccHhhHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHhhccCcceEEE
Q 002515 154 KDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVR 233 (913)
Q Consensus 154 ~~~~~y~~~~~~v~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~l~~~i~~Al~A~~l~~~d~dYiV~ 233 (913)
-...|..+..+... +.
T Consensus 158 -fr~~y~~L~~l~~~-------------------------------------------------------~p-------- 173 (607)
T PRK11057 158 -FRPEYAALGQLRQR-------------------------------------------------------FP-------- 173 (607)
T ss_pred -ccHHHHHHHHHHHh-------------------------------------------------------CC--------
Confidence 00000000000000 00
Q ss_pred CCeEEEEeCCCCccccCcccChhhhHHHHhHhCCcccCCceeeeeeeehhHHhhcCcccccCCCcccH-HHHHHHHhCCC
Q 002515 234 NGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTE-EKEFLKMFQMP 312 (913)
Q Consensus 234 dg~V~iVD~~TGR~~~gr~ws~GLHQaieaKEgv~i~~e~~t~a~IT~q~~F~~Y~kL~GmTGTa~te-~~Ef~~iY~l~ 312 (913)
+ ..+.++|+|+... ..++.+.+++.
T Consensus 174 --------------------------------~----------------------~~~v~lTAT~~~~~~~di~~~l~l~ 199 (607)
T PRK11057 174 --------------------------------T----------------------LPFMALTATADDTTRQDIVRLLGLN 199 (607)
T ss_pred --------------------------------C----------------------CcEEEEecCCChhHHHHHHHHhCCC
Confidence 0 1245778888654 34455555543
Q ss_pred --eEEeC-CCCCcccccCCCeEEeChhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEeccCCcc
Q 002515 313 --VIEVP-TNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKY 389 (913)
Q Consensus 313 --vv~IP-t~~p~~R~d~~d~v~~t~~~k~~aii~ei~~~~~~grPVLI~t~Si~~SE~ls~~L~~~gi~~~vLnA~~k~ 389 (913)
++.+. .++|..+. .+ .....+...++..+.. ..|.++||||.|++.++.++..|.+.|+++..+||+...
T Consensus 200 ~~~~~~~~~~r~nl~~----~v-~~~~~~~~~l~~~l~~--~~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~ 272 (607)
T PRK11057 200 DPLIQISSFDRPNIRY----TL-VEKFKPLDQLMRYVQE--QRGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDN 272 (607)
T ss_pred CeEEEECCCCCCccee----ee-eeccchHHHHHHHHHh--cCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCH
Confidence 23332 23343321 11 1222334445544433 467899999999999999999999999999999997544
Q ss_pred hhhHHHHHH-hcCCCccEEEEcCCCCCCccee
Q 002515 390 AAREAETVA-QAGRKYAITISTNMAGRGTDII 420 (913)
Q Consensus 390 ~~~Ea~Iia-~AG~~G~VTIATnmAGRGTDIk 420 (913)
.+|+..+-. +.| .-.|.|||+.+|||+||.
T Consensus 273 ~~R~~i~~~F~~g-~~~VLVaT~a~~~GIDip 303 (607)
T PRK11057 273 DVRADVQEAFQRD-DLQIVVATVAFGMGINKP 303 (607)
T ss_pred HHHHHHHHHHHCC-CCCEEEEechhhccCCCC
Confidence 444422222 456 457999999999999994
No 40
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=99.89 E-value=4.6e-21 Score=214.84 Aligned_cols=280 Identities=22% Similarity=0.271 Sum_probs=197.9
Q ss_pred chhHHHHHHHHhcCC--eEEecCCCchHHHHHHHHHHHHHc-------CCcEEEEecCHHHHHHHHHHHHHHhhhc-CCe
Q 002515 4 FDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALT-------GEGVHVVTVNDYLAQRDAEWMERVHRFL-GLS 73 (913)
Q Consensus 4 ~dvQl~g~l~L~~G~--IaEm~TGEGKTLva~lpa~l~AL~-------G~~VhVvT~NdyLA~RDae~~~~~y~~L-GLs 73 (913)
.+||-.....++.|+ +|..+||+|||++|++||+-.-+. |-+|.||||+++||-|.+.+...+..+. +++
T Consensus 106 T~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi~PTRELA~Q~~~eak~Ll~~h~~~~ 185 (543)
T KOG0342|consen 106 TPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLIICPTRELAMQIFAEAKELLKYHESIT 185 (543)
T ss_pred hHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEEecccHHHHHHHHHHHHHHHhhCCCcc
Confidence 578888888899998 999999999999999999843333 3489999999999999999999999999 999
Q ss_pred EEEEcCCCC--HHHHHhccCCCeEEECCCcchhhHHHHhhccchhhhhccCCCCceEEEeecchhhhhccCCCceeccCC
Q 002515 74 VGLIQRGMI--PEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGE 151 (913)
Q Consensus 74 v~~i~~~~~--~~~r~~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~tPLiiSg~ 151 (913)
|+.+.||.. .++.+..-.|.|+++||++| .|++...+ ..+.| ...++|+||||.+| |.++
T Consensus 186 v~~viGG~~~~~e~~kl~k~~niliATPGRL-----lDHlqNt~-~f~~r---~~k~lvlDEADrlL-d~GF-------- 247 (543)
T KOG0342|consen 186 VGIVIGGNNFSVEADKLVKGCNILIATPGRL-----LDHLQNTS-GFLFR---NLKCLVLDEADRLL-DIGF-------- 247 (543)
T ss_pred eEEEeCCccchHHHHHhhccccEEEeCCchH-----HhHhhcCC-cchhh---ccceeEeecchhhh-hccc--------
Confidence 999998854 45555555999999999994 67776543 34555 78999999999998 6543
Q ss_pred CCCCccchHHHHHHHHHhccCCCeEEeCCCCeeeccHhhHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHhhccCcceE
Q 002515 152 ASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYI 231 (913)
Q Consensus 152 ~~~~~~~y~~~~~~v~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~l~~~i~~Al~A~~l~~~d~dYi 231 (913)
-..+.+++..+. ++++.. |||++.+- -|.+. |+-.+++|.-||
T Consensus 248 -------~~di~~Ii~~lp---------k~rqt~-----------------LFSAT~~~--kV~~l--~~~~L~~d~~~v 290 (543)
T KOG0342|consen 248 -------EEDVEQIIKILP---------KQRQTL-----------------LFSATQPS--KVKDL--ARGALKRDPVFV 290 (543)
T ss_pred -------HHHHHHHHHhcc---------ccceee-----------------EeeCCCcH--HHHHH--HHHhhcCCceEe
Confidence 245677777774 366666 78876521 12221 222335544333
Q ss_pred EECCeEEEEeCCCCccccCcccChhhhHHHHhHhCCcccCCceeeeeeeehhHHhhcCcccccCCCcccHHHHHHHHhCC
Q 002515 232 VRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQM 311 (913)
Q Consensus 232 V~dg~V~iVD~~TGR~~~gr~ws~GLHQaieaKEgv~i~~e~~t~a~IT~q~~F~~Y~kL~GmTGTa~te~~Ef~~iY~l 311 (913)
= .+|...+...+ |++ |
T Consensus 291 ~------~~d~~~~~The----------------~l~-------------Q----------------------------- 306 (543)
T KOG0342|consen 291 N------VDDGGERETHE----------------RLE-------------Q----------------------------- 306 (543)
T ss_pred e------cCCCCCcchhh----------------ccc-------------c-----------------------------
Confidence 2 12221111111 110 0
Q ss_pred CeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEeccCCcchh
Q 002515 312 PVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAA 391 (913)
Q Consensus 312 ~vv~IPt~~p~~R~d~~d~v~~t~~~k~~aii~ei~~~~~~grPVLI~t~Si~~SE~ls~~L~~~gi~~~vLnA~~k~~~ 391 (913)
..|..+...++..+...+++.. +.-.|+|||+|+......+.+|....+|+--+|+++++..
T Consensus 307 -----------------gyvv~~~~~~f~ll~~~LKk~~-~~~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~k 368 (543)
T KOG0342|consen 307 -----------------GYVVAPSDSRFSLLYTFLKKNI-KRYKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNK 368 (543)
T ss_pred -----------------eEEeccccchHHHHHHHHHHhc-CCceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccc
Confidence 1123333445667777776643 3379999999999999999999999999999999866655
Q ss_pred hHHHHHHhcCCCccEEEEcCCCCCCccee
Q 002515 392 REAETVAQAGRKYAITISTNMAGRGTDII 420 (913)
Q Consensus 392 ~Ea~Iia~AG~~G~VTIATnmAGRGTDIk 420 (913)
|-.-.-.---...-|.++||.|.||.||.
T Consensus 369 RT~~~~~F~kaesgIL~cTDVaARGlD~P 397 (543)
T KOG0342|consen 369 RTSTFFEFCKAESGILVCTDVAARGLDIP 397 (543)
T ss_pred cchHHHHHhhcccceEEecchhhccCCCC
Confidence 53322211111344999999999999994
No 41
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.89 E-value=8.6e-22 Score=220.52 Aligned_cols=276 Identities=20% Similarity=0.218 Sum_probs=191.7
Q ss_pred CCchhHHHHHHHHhcCC--eEEecCCCchHHHHHHHHHHHHHcC------CcEEEEecCHHHHHHHHHHHHHHhhhcCCe
Q 002515 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALTG------EGVHVVTVNDYLAQRDAEWMERVHRFLGLS 73 (913)
Q Consensus 2 rp~dvQl~g~l~L~~G~--IaEm~TGEGKTLva~lpa~l~AL~G------~~VhVvT~NdyLA~RDae~~~~~y~~LGLs 73 (913)
.|.|+|..++++-+-|+ +|...||+|||.+|+||.+-.-|.. -+|.|++|+++||-|-+.-...+..|..|+
T Consensus 203 ~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL~PTRELaiQv~sV~~qlaqFt~I~ 282 (691)
T KOG0338|consen 203 KPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKKVAATRVLVLVPTRELAIQVHSVTKQLAQFTDIT 282 (691)
T ss_pred CCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCcccCcceeEEEEeccHHHHHHHHHHHHHHHhhccce
Confidence 69999999999888888 8999999999999999997443432 279999999999999999999999999999
Q ss_pred EEEEcCCCCHHHH--HhccCCCeEEECCCcchhhHHHHhhccchhhhhccCCCCceEEEeecchhhhhccCCCceeccCC
Q 002515 74 VGLIQRGMIPEER--RSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGE 151 (913)
Q Consensus 74 v~~i~~~~~~~~r--~~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~tPLiiSg~ 151 (913)
||+..||++-..+ ...-..|||.+||++| .|.|| .+++. .+. ++.++|+||||+|| |++
T Consensus 283 ~~L~vGGL~lk~QE~~LRs~PDIVIATPGRl-IDHlr----Ns~sf-~ld---siEVLvlDEADRML-eeg--------- 343 (691)
T KOG0338|consen 283 VGLAVGGLDLKAQEAVLRSRPDIVIATPGRL-IDHLR----NSPSF-NLD---SIEVLVLDEADRML-EEG--------- 343 (691)
T ss_pred eeeeecCccHHHHHHHHhhCCCEEEecchhH-HHHhc----cCCCc-ccc---ceeEEEechHHHHH-HHH---------
Confidence 9999999885444 4445679999999997 44444 44332 234 79999999999999 443
Q ss_pred CCCCccchHHHHHHHHHhccCCCeEEeCCCCeeeccHhhHHHHHHHhccCCCCCCCC--cHHHHHHHHHHHHHhhccCcc
Q 002515 152 ASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDEND--PWARFVMNALKAKEFYRRDVQ 229 (913)
Q Consensus 152 ~~~~~~~y~~~~~~v~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~--~l~~~i~~Al~A~~l~~~d~d 229 (913)
+-.++++++..+.+ +||.. |||++. ....++...| .
T Consensus 344 ------FademnEii~lcpk---------~RQTm-----------------LFSATMteeVkdL~slSL------~---- 381 (691)
T KOG0338|consen 344 ------FADEMNEIIRLCPK---------NRQTM-----------------LFSATMTEEVKDLASLSL------N---- 381 (691)
T ss_pred ------HHHHHHHHHHhccc---------cccce-----------------eehhhhHHHHHHHHHhhc------C----
Confidence 33578888888854 67776 788754 2233333222 2
Q ss_pred eEEECCeE-EEEeCCCCccccCcccChhhhHHHHhHhCCcccCCceeeeeeeehhHHhhcCcccccCCCcccHHHHHHHH
Q 002515 230 YIVRNGKA-LIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKM 308 (913)
Q Consensus 230 YiV~dg~V-~iVD~~TGR~~~gr~ws~GLHQaieaKEgv~i~~e~~t~a~IT~q~~F~~Y~kL~GmTGTa~te~~Ef~~i 308 (913)
.-| +.||+++-+.. +| .+||
T Consensus 382 -----kPvrifvd~~~~~a~-------~L--------------------------------------------tQEF--- 402 (691)
T KOG0338|consen 382 -----KPVRIFVDPNKDTAP-------KL--------------------------------------------TQEF--- 402 (691)
T ss_pred -----CCeEEEeCCccccch-------hh--------------------------------------------hHHH---
Confidence 122 22443221111 11 1222
Q ss_pred hCCCeEEeCCCCCcccccCCCeEEeChhHHHHHHH-HHHHHHHhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEeccCC
Q 002515 309 FQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYAR-QEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARP 387 (913)
Q Consensus 309 Y~l~vv~IPt~~p~~R~d~~d~v~~t~~~k~~aii-~ei~~~~~~grPVLI~t~Si~~SE~ls~~L~~~gi~~~vLnA~~ 387 (913)
+.|-+.+.-- ..|++ ..|.+.. ..-++||+.+.+.+..+.=+|-=.|+...-||+..
T Consensus 403 -----iRIR~~re~d---------------Rea~l~~l~~rtf--~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsL 460 (691)
T KOG0338|consen 403 -----IRIRPKREGD---------------REAMLASLITRTF--QDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSL 460 (691)
T ss_pred -----heeccccccc---------------cHHHHHHHHHHhc--ccceEEEEehHHHHHHHHHHHHHhhchhhhhcccc
Confidence 2232222111 12322 3333332 45799999999999999999988999988888854
Q ss_pred cchhhHHHHHH-hcCCCccEEEEcCCCCCCccee
Q 002515 388 KYAAREAETVA-QAGRKYAITISTNMAGRGTDII 420 (913)
Q Consensus 388 k~~~~Ea~Iia-~AG~~G~VTIATnmAGRGTDIk 420 (913)
.|.+|=..+-. +-+ .-.|.|||+.|.||.||.
T Consensus 461 tQ~QRlesL~kFk~~-eidvLiaTDvAsRGLDI~ 493 (691)
T KOG0338|consen 461 TQEQRLESLEKFKKE-EIDVLIATDVASRGLDIE 493 (691)
T ss_pred cHHHHHHHHHHHHhc-cCCEEEEechhhccCCcc
Confidence 34444223333 333 458999999999999995
No 42
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.89 E-value=2.8e-21 Score=215.26 Aligned_cols=277 Identities=19% Similarity=0.211 Sum_probs=197.6
Q ss_pred CchhHHHHHHHHhcCC--eEEecCCCchHHHHHHHHHHHHHc-------CC--cEEEEecCHHHHHHHHHHHHHHhhh-c
Q 002515 3 HFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALT-------GE--GVHVVTVNDYLAQRDAEWMERVHRF-L 70 (913)
Q Consensus 3 p~dvQl~g~l~L~~G~--IaEm~TGEGKTLva~lpa~l~AL~-------G~--~VhVvT~NdyLA~RDae~~~~~y~~-L 70 (913)
-+|||..+++.|+.++ ++|..||+||||+|++|+. ..+. +. +..||||+++||.|..+-..||... .
T Consensus 29 mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~l-e~i~rr~~~~~~~~vgalIIsPTRELa~QI~~V~~~F~~~l~ 107 (567)
T KOG0345|consen 29 MTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPML-EIIYRREAKTPPGQVGALIISPTRELARQIREVAQPFLEHLP 107 (567)
T ss_pred cCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHH-HHHHhhccCCCccceeEEEecCcHHHHHHHHHHHHHHHHhhh
Confidence 3699999999999888 9999999999999999996 4552 22 5689999999999999999999986 7
Q ss_pred CCeEEEEcCCCCHHHHHhc---cCCCeEEECCCcchhhHHHHhhccchhhhhccCCCCceEEEeecchhhhhccCCCcee
Q 002515 71 GLSVGLIQRGMIPEERRSN---YRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLL 147 (913)
Q Consensus 71 GLsv~~i~~~~~~~~r~~a---Y~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~tPLi 147 (913)
.+++-++.||.+.++-... -++.|+.||||++ +|.+. ...+..-.| .+.++|+||||..| |.++
T Consensus 108 ~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL-~di~~----~~~~~l~~r---sLe~LVLDEADrLl-dmgF---- 174 (567)
T KOG0345|consen 108 NLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRL-LDILQ----REAEKLSFR---SLEILVLDEADRLL-DMGF---- 174 (567)
T ss_pred ccceEEEecCccHHHHHHHHHHhCCcEEEeCchhH-HHHHh----chhhhcccc---ccceEEecchHhHh-cccH----
Confidence 9999999999887654443 3578999999996 55543 322333456 99999999999987 6542
Q ss_pred ccCCCCCCccchHHHHHHHHHhccCCCeEEeCCCCeeeccHhhHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHhhccC
Q 002515 148 ISGEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRD 227 (913)
Q Consensus 148 iSg~~~~~~~~y~~~~~~v~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~l~~~i~~Al~A~~l~~~d 227 (913)
-..++.+...|++ +|.. .|||++. ..-+.+..+ ..+..-
T Consensus 175 -----------e~~~n~ILs~LPK---------QRRT-----------------GLFSATq--~~~v~dL~r--aGLRNp 213 (567)
T KOG0345|consen 175 -----------EASVNTILSFLPK---------QRRT-----------------GLFSATQ--TQEVEDLAR--AGLRNP 213 (567)
T ss_pred -----------HHHHHHHHHhccc---------cccc-----------------ccccchh--hHHHHHHHH--hhccCc
Confidence 3467888888854 4443 3788753 112222111 111111
Q ss_pred cceEEECCeEEEEeCCCCccccCcccChhhhHHHHhHhCCcccCCce--eeeeeeehhHHhhcCcccccCCCcccHHHHH
Q 002515 228 VQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSV--VVAQITYQSLFKLYPKLSGMTGTAKTEEKEF 305 (913)
Q Consensus 228 ~dYiV~dg~V~iVD~~TGR~~~gr~ws~GLHQaieaKEgv~i~~e~~--t~a~IT~q~~F~~Y~kL~GmTGTa~te~~Ef 305 (913)
+ . |.+..++. |.++. ++
T Consensus 214 v---------------------------------~----V~V~~k~~~~tPS~L--~~---------------------- 232 (567)
T KOG0345|consen 214 V---------------------------------R----VSVKEKSKSATPSSL--AL---------------------- 232 (567)
T ss_pred e---------------------------------e----eeecccccccCchhh--cc----------------------
Confidence 1 0 11111111 11111 01
Q ss_pred HHHhCCCeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHC--CCCeEEe
Q 002515 306 LKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQ--GIPHNVL 383 (913)
Q Consensus 306 ~~iY~l~vv~IPt~~p~~R~d~~d~v~~t~~~k~~aii~ei~~~~~~grPVLI~t~Si~~SE~ls~~L~~~--gi~~~vL 383 (913)
..+.....+|...+++-+.. .+-..++||++|....++.+..|... +++.--+
T Consensus 233 -----------------------~Y~v~~a~eK~~~lv~~L~~--~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~i 287 (567)
T KOG0345|consen 233 -----------------------EYLVCEADEKLSQLVHLLNN--NKDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSI 287 (567)
T ss_pred -----------------------eeeEecHHHHHHHHHHHHhc--cccccEEEEecCcchHHHHHHHHHHHhCCCcEEEe
Confidence 11234667899998888776 45578999999999999999988764 5677788
Q ss_pred ccCCcchhhHHHHHHhcCCCccEEEEcCCCCCCccee
Q 002515 384 NARPKYAAREAETVAQAGRKYAITISTNMAGRGTDII 420 (913)
Q Consensus 384 nA~~k~~~~Ea~Iia~AG~~G~VTIATnmAGRGTDIk 420 (913)
|++.+|.+|-..+-+---.+..|.++|+.|.||+||.
T Consensus 288 HGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGlDip 324 (567)
T KOG0345|consen 288 HGKMSQKARAKVLEAFRKLSNGVLFCTDVAARGLDIP 324 (567)
T ss_pred cchhcchhHHHHHHHHHhccCceEEeehhhhccCCCC
Confidence 9987777776555553335788999999999999995
No 43
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.88 E-value=2.7e-21 Score=219.19 Aligned_cols=283 Identities=22% Similarity=0.247 Sum_probs=206.1
Q ss_pred CCchhHHHHHHHHhcCC--eEEecCCCchHHHHHHHHHHHHHcC-------------CcEEEEecCHHHHHHHHHHHHHH
Q 002515 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALTG-------------EGVHVVTVNDYLAQRDAEWMERV 66 (913)
Q Consensus 2 rp~dvQl~g~l~L~~G~--IaEm~TGEGKTLva~lpa~l~AL~G-------------~~VhVvT~NdyLA~RDae~~~~~ 66 (913)
+|.|||=.+++++.+|+ +|+..||+|||.+|++|+.-.++.. -++.|++||++||.|.+++.+.|
T Consensus 96 ~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~nea~k~ 175 (482)
T KOG0335|consen 96 KPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQIYNEARKF 175 (482)
T ss_pred CCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhHHHHHHHhh
Confidence 68999999999999988 9999999999999999998766653 36799999999999999999999
Q ss_pred hhhcCCeEEEEcCCCC--HHHHHhccCCCeEEECCCcchhhHHHHhhccchhhhhccCCCCceEEEeecchhhhhc-cCC
Q 002515 67 HRFLGLSVGLIQRGMI--PEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLID-EGR 143 (913)
Q Consensus 67 y~~LGLsv~~i~~~~~--~~~r~~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiD-ea~ 143 (913)
--..++.+..++++.+ .+.+..--+|||.++|++.+. |.+.... .-+. .+.|+++||||.|| | .++
T Consensus 176 ~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~-d~~e~g~------i~l~---~~k~~vLDEADrMl-D~mgF 244 (482)
T KOG0335|consen 176 SYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLK-DLIERGK------ISLD---NCKFLVLDEADRML-DEMGF 244 (482)
T ss_pred cccccceeeeeeCCcchhhhhhhhccCccEEEecCchhh-hhhhcce------eehh---hCcEEEecchHHhh-hhccc
Confidence 9999999999998854 344555667999999999963 3333222 2233 67899999999998 6 555
Q ss_pred CceeccCCCCCCccchHHHHHHHHHhccCCCeEEeCCCCeeeccHhhHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHh
Q 002515 144 NPLLISGEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEF 223 (913)
Q Consensus 144 tPLiiSg~~~~~~~~y~~~~~~v~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~l~~~i~~Al~A~~l 223 (913)
-| .+.+++.++.... ...++.. ||+++.+ ..++. +.+.++
T Consensus 245 ~p---------------~Ir~iv~~~~~~~-----~~~~qt~-----------------mFSAtfp--~~iq~-l~~~fl 284 (482)
T KOG0335|consen 245 EP---------------QIRKIVEQLGMPP-----KNNRQTL-----------------LFSATFP--KEIQR-LAADFL 284 (482)
T ss_pred cc---------------cHHHHhcccCCCC-----ccceeEE-----------------EEeccCC--hhhhh-hHHHHh
Confidence 54 7777777764321 1133443 7887753 23333 323333
Q ss_pred hccCcceEEECCeEEEEeCCCCccccCcccChhhhHHHHhHhCCcccCCceeeeeeeehhHHhhcCcccccCCCcccHHH
Q 002515 224 YRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEK 303 (913)
Q Consensus 224 ~~~d~dYiV~dg~V~iVD~~TGR~~~gr~ws~GLHQaieaKEgv~i~~e~~t~a~IT~q~~F~~Y~kL~GmTGTa~te~~ 303 (913)
+ .+ |+..
T Consensus 285 ~-~~--yi~l---------------------------------------------------------------------- 291 (482)
T KOG0335|consen 285 K-DN--YIFL---------------------------------------------------------------------- 291 (482)
T ss_pred h-cc--ceEE----------------------------------------------------------------------
Confidence 2 11 4431
Q ss_pred HHHHHhCCCeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHHH---hcC----CcEEEEecchhhHHHHHHHHHHC
Q 002515 304 EFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMF---RLG----RPVLVGSTSVENSEYLSDLLKQQ 376 (913)
Q Consensus 304 Ef~~iY~l~vv~IPt~~p~~R~d~~d~v~~t~~~k~~aii~ei~~~~---~~g----rPVLI~t~Si~~SE~ls~~L~~~ 376 (913)
.|..|-+..++.. .-.+|..+.+|..++++...... .+| .-+|||+++++.+..++..|...
T Consensus 292 --------aV~rvg~~~~ni~---q~i~~V~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~ 360 (482)
T KOG0335|consen 292 --------AVGRVGSTSENIT---QKILFVNEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSN 360 (482)
T ss_pred --------EEeeeccccccce---eEeeeecchhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcC
Confidence 1112222222221 12457788888888887776443 122 25999999999999999999999
Q ss_pred CCCeEEeccCCcchhhHHHHHH-hcCCCccEEEEcCCCCCCccee
Q 002515 377 GIPHNVLNARPKYAAREAETVA-QAGRKYAITISTNMAGRGTDII 420 (913)
Q Consensus 377 gi~~~vLnA~~k~~~~Ea~Iia-~AG~~G~VTIATnmAGRGTDIk 420 (913)
|++..-+|+...+.++|..+-. +.| .-.|.||||.|.||.||+
T Consensus 361 ~~~~~sIhg~~tq~er~~al~~Fr~g-~~pvlVaT~VaaRGlDi~ 404 (482)
T KOG0335|consen 361 GYPAKSIHGDRTQIEREQALNDFRNG-KAPVLVATNVAARGLDIP 404 (482)
T ss_pred CCCceeecchhhhhHHHHHHHHhhcC-CcceEEEehhhhcCCCCC
Confidence 9999999997666677766665 666 457999999999999996
No 44
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=99.88 E-value=5.5e-21 Score=215.60 Aligned_cols=276 Identities=21% Similarity=0.257 Sum_probs=201.2
Q ss_pred CCchhHHHHHHHHhcCC--eEEecCCCchHHHHHHHHHHHHHc--------CCcEEEEecCHHHHHHHHHHHHHHhhhcC
Q 002515 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALT--------GEGVHVVTVNDYLAQRDAEWMERVHRFLG 71 (913)
Q Consensus 2 rp~dvQl~g~l~L~~G~--IaEm~TGEGKTLva~lpa~l~AL~--------G~~VhVvT~NdyLA~RDae~~~~~y~~LG 71 (913)
.|.+||--+++.-++|+ |+-.+||+||||+|++|++ .+|. |-||.||+|+++||-+.++-+..+..+.+
T Consensus 91 ~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvl-E~L~r~kWs~~DGlGalIISPTRELA~QtFevL~kvgk~h~ 169 (758)
T KOG0343|consen 91 KMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVL-EALYRLKWSPTDGLGALIISPTRELALQTFEVLNKVGKHHD 169 (758)
T ss_pred cHHHHHHhhcchhccCcccccccccCCCceeeehHHHH-HHHHHcCCCCCCCceeEEecchHHHHHHHHHHHHHHhhccc
Confidence 46789999999889999 9999999999999999996 5553 67999999999999999999999999999
Q ss_pred CeEEEEcCCCCH-HHHHhccCCCeEEECCCcchhhHHHHhhccchhhhhccCCCCceEEEeecchhhhhccCCCceeccC
Q 002515 72 LSVGLIQRGMIP-EERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISG 150 (913)
Q Consensus 72 Lsv~~i~~~~~~-~~r~~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~tPLiiSg 150 (913)
+|+|+|.||.+. .++...-++.|.+|||+++ ..+|..++. .-.. .+..+|+||||.|| |.++
T Consensus 170 fSaGLiiGG~~~k~E~eRi~~mNILVCTPGRL-----LQHmde~~~-f~t~---~lQmLvLDEADR~L-DMGF------- 232 (758)
T KOG0343|consen 170 FSAGLIIGGKDVKFELERISQMNILVCTPGRL-----LQHMDENPN-FSTS---NLQMLVLDEADRML-DMGF------- 232 (758)
T ss_pred cccceeecCchhHHHHHhhhcCCeEEechHHH-----HHHhhhcCC-CCCC---cceEEEeccHHHHH-HHhH-------
Confidence 999999999874 3666678899999999984 566765432 1223 89999999999998 6653
Q ss_pred CCCCCccchHHHHHHHHHhccCCCeEEeCCCCeeeccHhhHHHHHHHhccCCCCCCCC--cHHHHHHHHHHHHHhhccCc
Q 002515 151 EASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDEND--PWARFVMNALKAKEFYRRDV 228 (913)
Q Consensus 151 ~~~~~~~~y~~~~~~v~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~--~l~~~i~~Al~A~~l~~~d~ 228 (913)
-..++.++..|.+ .||.+ |||++. ....... |--+|-
T Consensus 233 --------k~tL~~Ii~~lP~---------~RQTL-----------------LFSATqt~svkdLaR-------LsL~dP 271 (758)
T KOG0343|consen 233 --------KKTLNAIIENLPK---------KRQTL-----------------LFSATQTKSVKDLAR-------LSLKDP 271 (758)
T ss_pred --------HHHHHHHHHhCCh---------hheee-----------------eeecccchhHHHHHH-------hhcCCC
Confidence 2467888888854 67776 788753 1222211 112344
Q ss_pred ceEEECCeEEEEeCCCCccccCcccChhhhHHHHhHhCCcccCCceeeeeeeehhHHhhcCcccccCCCcccHHHHHHHH
Q 002515 229 QYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKM 308 (913)
Q Consensus 229 dYiV~dg~V~iVD~~TGR~~~gr~ws~GLHQaieaKEgv~i~~e~~t~a~IT~q~~F~~Y~kL~GmTGTa~te~~Ef~~i 308 (913)
.||-. | -+.++++ ...|.+
T Consensus 272 ~~vsv------------------------h-----------------------------------e~a~~at-P~~L~Q- 290 (758)
T KOG0343|consen 272 VYVSV------------------------H-----------------------------------ENAVAAT-PSNLQQ- 290 (758)
T ss_pred cEEEE------------------------e-----------------------------------ccccccC-hhhhhh-
Confidence 44431 1 0011111 000111
Q ss_pred hCCCeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHC--CCCeEEeccC
Q 002515 309 FQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQ--GIPHNVLNAR 386 (913)
Q Consensus 309 Y~l~vv~IPt~~p~~R~d~~d~v~~t~~~k~~aii~ei~~~~~~grPVLI~t~Si~~SE~ls~~L~~~--gi~~~vLnA~ 386 (913)
..+.....+|.+.+-.-|... -....|||.+|..++..+...+.+. |+|.--|+++
T Consensus 291 --------------------~y~~v~l~~Ki~~L~sFI~sh--lk~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~ 348 (758)
T KOG0343|consen 291 --------------------SYVIVPLEDKIDMLWSFIKSH--LKKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGT 348 (758)
T ss_pred --------------------eEEEEehhhHHHHHHHHHHhc--cccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccc
Confidence 112334577888888888774 3468999999999999999999774 8999999998
Q ss_pred CcchhhHHHHHHh-cCCCccEEEEcCCCCCCccee
Q 002515 387 PKYAAREAETVAQ-AGRKYAITISTNMAGRGTDII 420 (913)
Q Consensus 387 ~k~~~~Ea~Iia~-AG~~G~VTIATnmAGRGTDIk 420 (913)
+++..|- ++-.+ --....|..||++|.||.|+.
T Consensus 349 ~~Q~~R~-ev~~~F~~~~~~vLF~TDv~aRGLDFp 382 (758)
T KOG0343|consen 349 MSQKKRI-EVYKKFVRKRAVVLFCTDVAARGLDFP 382 (758)
T ss_pred hhHHHHH-HHHHHHHHhcceEEEeehhhhccCCCc
Confidence 6655553 33332 222567999999999999994
No 45
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.88 E-value=1.3e-20 Score=224.31 Aligned_cols=264 Identities=20% Similarity=0.228 Sum_probs=176.1
Q ss_pred CchhHHHHHHHHhcCC--eEEecCCCchHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCC
Q 002515 3 HFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRG 80 (913)
Q Consensus 3 p~dvQl~g~l~L~~G~--IaEm~TGEGKTLva~lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLsv~~i~~~ 80 (913)
+.|+|.-++.++++|+ ++.|.||.|||+++.+|+.+ .+..+.||+|...|.++..+.+.. +|+.+..+.++
T Consensus 14 fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~---~~g~~lVisPl~sL~~dq~~~l~~----~gi~~~~~~s~ 86 (591)
T TIGR01389 14 FRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALL---LKGLTVVISPLISLMKDQVDQLRA----AGVAAAYLNST 86 (591)
T ss_pred CCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHH---cCCcEEEEcCCHHHHHHHHHHHHH----cCCcEEEEeCC
Confidence 5678999999888888 99999999999999999973 455678999999999987776654 69999999888
Q ss_pred CCHHHHHhcc------CCCeEEECCCcchhhHHHHhhccchhhhhccCCCCceEEEeecchhhhhccC-CCceeccCCCC
Q 002515 81 MIPEERRSNY------RCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEG-RNPLLISGEAS 153 (913)
Q Consensus 81 ~~~~~r~~aY------~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea-~tPLiiSg~~~ 153 (913)
.+..++...+ ..+|+|+|+..+.-+.++..+. .. .+.++||||||.+.-... ..|
T Consensus 87 ~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~-------~~---~l~~iViDEaH~i~~~g~~frp-------- 148 (591)
T TIGR01389 87 LSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQ-------RI---PIALVAVDEAHCVSQWGHDFRP-------- 148 (591)
T ss_pred CCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHh-------cC---CCCEEEEeCCcccccccCccHH--------
Confidence 8877655433 4699999999875443333221 12 789999999999751100 000
Q ss_pred CCccchHHHHHHHHHhccCCCeEEeCCCCeeeccHhhHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHhhccCcceEEE
Q 002515 154 KDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVR 233 (913)
Q Consensus 154 ~~~~~y~~~~~~v~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~l~~~i~~Al~A~~l~~~d~dYiV~ 233 (913)
.|..+..+...+..
T Consensus 149 ----~y~~l~~l~~~~~~-------------------------------------------------------------- 162 (591)
T TIGR01389 149 ----EYQRLGSLAERFPQ-------------------------------------------------------------- 162 (591)
T ss_pred ----HHHHHHHHHHhCCC--------------------------------------------------------------
Confidence 01111111100000
Q ss_pred CCeEEEEeCCCCccccCcccChhhhHHHHhHhCCcccCCceeeeeeeehhHHhhcCcccccCCCcccH-HHHHHHHhCCC
Q 002515 234 NGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTE-EKEFLKMFQMP 312 (913)
Q Consensus 234 dg~V~iVD~~TGR~~~gr~ws~GLHQaieaKEgv~i~~e~~t~a~IT~q~~F~~Y~kL~GmTGTa~te-~~Ef~~iY~l~ 312 (913)
..+.++|+|+... ...+.+..++.
T Consensus 163 -------------------------------------------------------~~vi~lTAT~~~~~~~~i~~~l~~~ 187 (591)
T TIGR01389 163 -------------------------------------------------------VPRIALTATADAETRQDIRELLRLA 187 (591)
T ss_pred -------------------------------------------------------CCEEEEEeCCCHHHHHHHHHHcCCC
Confidence 0144677777654 33455555542
Q ss_pred --eEEe-CCCCCcccccCCCeEEeChhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEeccCCcc
Q 002515 313 --VIEV-PTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKY 389 (913)
Q Consensus 313 --vv~I-Pt~~p~~R~d~~d~v~~t~~~k~~aii~ei~~~~~~grPVLI~t~Si~~SE~ls~~L~~~gi~~~vLnA~~k~ 389 (913)
.+.+ +.++|... ..+ .....+...+.+.+.. ..|+++||||.|...++.+++.|...|++...+|++...
T Consensus 188 ~~~~~~~~~~r~nl~----~~v-~~~~~~~~~l~~~l~~--~~~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~ 260 (591)
T TIGR01389 188 DANEFITSFDRPNLR----FSV-VKKNNKQKFLLDYLKK--HRGQSGIIYASSRKKVEELAERLESQGISALAYHAGLSN 260 (591)
T ss_pred CCCeEecCCCCCCcE----EEE-EeCCCHHHHHHHHHHh--cCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCH
Confidence 2222 22333221 111 1234455666666654 237899999999999999999999999999999997544
Q ss_pred hhhHHHHHH-hcCCCccEEEEcCCCCCCccee
Q 002515 390 AAREAETVA-QAGRKYAITISTNMAGRGTDII 420 (913)
Q Consensus 390 ~~~Ea~Iia-~AG~~G~VTIATnmAGRGTDIk 420 (913)
.+++..+-. ..|. -.|.|||+.+|+|+|+.
T Consensus 261 ~~R~~i~~~F~~g~-~~vlVaT~a~~~GID~p 291 (591)
T TIGR01389 261 KVRAENQEDFLYDD-VKVMVATNAFGMGIDKP 291 (591)
T ss_pred HHHHHHHHHHHcCC-CcEEEEechhhccCcCC
Confidence 444432222 4563 58999999999999973
No 46
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=99.87 E-value=4.7e-22 Score=216.53 Aligned_cols=274 Identities=22% Similarity=0.290 Sum_probs=195.1
Q ss_pred CCCchhHHHHHHHHhcCC--eEEecCCCchHHHHHHHHHHHHHc-----------CCcEEEEecCHHHHHHHHHHHHHHh
Q 002515 1 MRHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALT-----------GEGVHVVTVNDYLAQRDAEWMERVH 67 (913)
Q Consensus 1 ~rp~dvQl~g~l~L~~G~--IaEm~TGEGKTLva~lpa~l~AL~-----------G~~VhVvT~NdyLA~RDae~~~~~y 67 (913)
+.|+|+|+.|.++.+.|+ |.-.-||+||||+|+||++..||. |.--.||||+++||++-++-...++
T Consensus 191 ~~PTpIQvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~gLiicPSRELArQt~~iie~~~ 270 (610)
T KOG0341|consen 191 VHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPYGLIICPSRELARQTHDIIEQYV 270 (610)
T ss_pred CCCCceeecCcceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCCCeeEEEcCcHHHHHHHHHHHHHHH
Confidence 469999999999999999 888899999999999999999986 4456899999999999999999998
Q ss_pred hhcC------CeEEEEcCCCCHHHHHh--ccCCCeEEECCCcchhhHHHHhhccchhhhhccCCCCceEEEeecchhhhh
Q 002515 68 RFLG------LSVGLIQRGMIPEERRS--NYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLI 139 (913)
Q Consensus 68 ~~LG------Lsv~~i~~~~~~~~r~~--aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLi 139 (913)
..|+ +.+++..++++..+.-. .-+.+|+++|++++ -|.|-..+. .+. -++|+.+||||+|+
T Consensus 271 ~~L~e~g~P~lRs~LciGG~~v~eql~~v~~GvHivVATPGRL-~DmL~KK~~------sLd---~CRyL~lDEADRmi- 339 (610)
T KOG0341|consen 271 AALQEAGYPELRSLLCIGGVPVREQLDVVRRGVHIVVATPGRL-MDMLAKKIM------SLD---ACRYLTLDEADRMI- 339 (610)
T ss_pred HHHHhcCChhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcchH-HHHHHHhhc------cHH---HHHHhhhhhHHHHh-
Confidence 8775 55666778887555443 44679999999996 354433322 223 57799999999987
Q ss_pred ccCCCceeccCCCCCCccchHHHHHHHHHhccCCCeEEeCCCCeeeccHhhHHHHHHHhccCCCCCCCCcH--HHHHHHH
Q 002515 140 DEGRNPLLISGEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPW--ARFVMNA 217 (913)
Q Consensus 140 Dea~tPLiiSg~~~~~~~~y~~~~~~v~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~l--~~~i~~A 217 (913)
|.++. ..+..+...++. +|+.+ ||+++.+- .-+..+|
T Consensus 340 DmGFE---------------ddir~iF~~FK~---------QRQTL-----------------LFSATMP~KIQ~FAkSA 378 (610)
T KOG0341|consen 340 DMGFE---------------DDIRTIFSFFKG---------QRQTL-----------------LFSATMPKKIQNFAKSA 378 (610)
T ss_pred hccch---------------hhHHHHHHHHhh---------hhhee-----------------eeeccccHHHHHHHHhh
Confidence 76542 244445555532 56666 78887642 2333344
Q ss_pred HHHHHhhccCcceEEECCeEEEEeCCCCccccCcccChhhhHHHHhHhCCcccCCceeeeeeeehhHHhhcCcccccCCC
Q 002515 218 LKAKEFYRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGT 297 (913)
Q Consensus 218 l~A~~l~~~d~dYiV~dg~V~iVD~~TGR~~~gr~ws~GLHQaieaKEgv~i~~e~~t~a~IT~q~~F~~Y~kL~GmTGT 297 (913)
| |.+|--+-||. |.
T Consensus 379 L------------------VKPvtvNVGRA------------------------------------------------GA 392 (610)
T KOG0341|consen 379 L------------------VKPVTVNVGRA------------------------------------------------GA 392 (610)
T ss_pred c------------------ccceEEecccc------------------------------------------------cc
Confidence 3 11122122221 21
Q ss_pred cccHHHHHHHHhCCCeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHCC
Q 002515 298 AKTEEKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQG 377 (913)
Q Consensus 298 a~te~~Ef~~iY~l~vv~IPt~~p~~R~d~~d~v~~t~~~k~~aii~ei~~~~~~grPVLI~t~Si~~SE~ls~~L~~~g 377 (913)
|. ++|+ ..+-|...++|.--++ +|. .+..-||||||+...+.+.+.++|.-.|
T Consensus 393 As-----------ldVi-------------QevEyVkqEaKiVylL-eCL--QKT~PpVLIFaEkK~DVD~IhEYLLlKG 445 (610)
T KOG0341|consen 393 AS-----------LDVI-------------QEVEYVKQEAKIVYLL-ECL--QKTSPPVLIFAEKKADVDDIHEYLLLKG 445 (610)
T ss_pred cc-----------hhHH-------------HHHHHHHhhhhhhhHH-HHh--ccCCCceEEEeccccChHHHHHHHHHcc
Confidence 11 1111 0001333344433332 222 3566799999999999999999999999
Q ss_pred CCeEEeccCCcchhhHHHHHH-hcCCCccEEEEcCCCCCCccee
Q 002515 378 IPHNVLNARPKYAAREAETVA-QAGRKYAITISTNMAGRGTDII 420 (913)
Q Consensus 378 i~~~vLnA~~k~~~~Ea~Iia-~AG~~G~VTIATnmAGRGTDIk 420 (913)
+....+|++..+.+|.+.|-+ ++| +..|.|||+.|..|.|+.
T Consensus 446 VEavaIHGGKDQedR~~ai~afr~g-kKDVLVATDVASKGLDFp 488 (610)
T KOG0341|consen 446 VEAVAIHGGKDQEDRHYAIEAFRAG-KKDVLVATDVASKGLDFP 488 (610)
T ss_pred ceeEEeecCcchhHHHHHHHHHhcC-CCceEEEecchhccCCCc
Confidence 999999998778888888887 889 568999999999999994
No 47
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.87 E-value=1.4e-20 Score=230.51 Aligned_cols=270 Identities=16% Similarity=0.108 Sum_probs=172.4
Q ss_pred CchhHHHHHHHHhcCC--eEEecCCCchHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCC
Q 002515 3 HFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRG 80 (913)
Q Consensus 3 p~dvQl~g~l~L~~G~--IaEm~TGEGKTLva~lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLsv~~i~~~ 80 (913)
+.|+|..++.+++.|+ |+.|.||.||||+|.+|+++ .+..+.||+|...|++.....+. .+|+.+..+.++
T Consensus 461 FRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~---~~GiTLVISPLiSLmqDQV~~L~----~~GI~Aa~L~s~ 533 (1195)
T PLN03137 461 FRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALI---CPGITLVISPLVSLIQDQIMNLL----QANIPAASLSAG 533 (1195)
T ss_pred CCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHH---cCCcEEEEeCHHHHHHHHHHHHH----hCCCeEEEEECC
Confidence 5688999999999998 99999999999999999974 45678999999999985444433 269999999999
Q ss_pred CCHHHHHhcc--------CCCeEEECCCcch-hhHHHHhhccchhhhhccCCCCceEEEeecchhhhhccC-CCceeccC
Q 002515 81 MIPEERRSNY--------RCDITYTNNSELG-FDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEG-RNPLLISG 150 (913)
Q Consensus 81 ~~~~~r~~aY--------~~DI~YgT~~e~~-fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea-~tPLiiSg 150 (913)
++..++...+ ..+|+|+||..+. .|.+.+.+.. ...+ ..+.++||||||.|+--.. +-|
T Consensus 534 ~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~----L~~~--~~LslIVIDEAHcVSqWGhDFRp----- 602 (1195)
T PLN03137 534 MEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLEN----LNSR--GLLARFVIDEAHCVSQWGHDFRP----- 602 (1195)
T ss_pred CCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHh----hhhc--cccceeccCcchhhhhcccchHH-----
Confidence 8866654322 3599999999874 2444444421 1111 1578899999999862110 000
Q ss_pred CCCCCccchHHHHHHHHHhccCCCeEEeCCCCeeeccHhhHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHhhccCcce
Q 002515 151 EASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQY 230 (913)
Q Consensus 151 ~~~~~~~~y~~~~~~v~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~l~~~i~~Al~A~~l~~~d~dY 230 (913)
.|..+..+...+.
T Consensus 603 -------dYr~L~~Lr~~fp------------------------------------------------------------ 615 (1195)
T PLN03137 603 -------DYQGLGILKQKFP------------------------------------------------------------ 615 (1195)
T ss_pred -------HHHHHHHHHHhCC------------------------------------------------------------
Confidence 0100000000000
Q ss_pred EEECCeEEEEeCCCCccccCcccChhhhHHHHhHhCCcccCCceeeeeeeehhHHhhcCcccccCCCcccHH-HHHHHHh
Q 002515 231 IVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEE-KEFLKMF 309 (913)
Q Consensus 231 iV~dg~V~iVD~~TGR~~~gr~ws~GLHQaieaKEgv~i~~e~~t~a~IT~q~~F~~Y~kL~GmTGTa~te~-~Ef~~iY 309 (913)
+ ..+.++|+||.... +++.+..
T Consensus 616 -----------------------------------~----------------------vPilALTATAT~~V~eDI~~~L 638 (1195)
T PLN03137 616 -----------------------------------N----------------------IPVLALTATATASVKEDVVQAL 638 (1195)
T ss_pred -----------------------------------C----------------------CCeEEEEecCCHHHHHHHHHHc
Confidence 0 02346778876543 3455555
Q ss_pred CCCe-EEe--CCCCCcccccCCCeEEeChhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEeccC
Q 002515 310 QMPV-IEV--PTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNAR 386 (913)
Q Consensus 310 ~l~v-v~I--Pt~~p~~R~d~~d~v~~t~~~k~~aii~ei~~~~~~grPVLI~t~Si~~SE~ls~~L~~~gi~~~vLnA~ 386 (913)
++.- +++ ..++|..+ ..|..........+...+... ..+.+.||||.|...+|.++..|...|++...+||+
T Consensus 639 ~l~~~~vfr~Sf~RpNL~----y~Vv~k~kk~le~L~~~I~~~-~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAG 713 (1195)
T PLN03137 639 GLVNCVVFRQSFNRPNLW----YSVVPKTKKCLEDIDKFIKEN-HFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGS 713 (1195)
T ss_pred CCCCcEEeecccCccceE----EEEeccchhHHHHHHHHHHhc-ccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCC
Confidence 5532 111 12233221 122222211223444444332 235689999999999999999999999999999998
Q ss_pred CcchhhHHHHHH-hcCCCccEEEEcCCCCCCccee
Q 002515 387 PKYAAREAETVA-QAGRKYAITISTNMAGRGTDII 420 (913)
Q Consensus 387 ~k~~~~Ea~Iia-~AG~~G~VTIATnmAGRGTDIk 420 (913)
....+|+...-. ..| ...|.|||+.+|||+|+.
T Consensus 714 Ls~eeR~~vqe~F~~G-ei~VLVATdAFGMGIDkP 747 (1195)
T PLN03137 714 MDPAQRAFVQKQWSKD-EINIICATVAFGMGINKP 747 (1195)
T ss_pred CCHHHHHHHHHHHhcC-CCcEEEEechhhcCCCcc
Confidence 544444433222 345 457999999999999994
No 48
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.87 E-value=1.8e-20 Score=226.33 Aligned_cols=121 Identities=22% Similarity=0.301 Sum_probs=103.4
Q ss_pred CCchhHHHHHHHHhcC--------CeEEecCCCchHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCe
Q 002515 2 RHFDVQIIGGAVLHDG--------SIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLS 73 (913)
Q Consensus 2 rp~dvQl~g~l~L~~G--------~IaEm~TGEGKTLva~lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLs 73 (913)
.|++.|.-+...+.+| ++++..||+|||++|++|++.....|..|.|++|++.||.+-++.+..++..+|++
T Consensus 261 ~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~ 340 (681)
T PRK10917 261 ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEAGYQAALMAPTEILAEQHYENLKKLLEPLGIR 340 (681)
T ss_pred CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEeccHHHHHHHHHHHHHHHhhcCcE
Confidence 4789999999987765 49999999999999999998766789999999999999999999999999999999
Q ss_pred EEEEcCCCCHHHHHhcc------CCCeEEECCCcchhhHHHHhhccchhhhhccCCCCceEEEeecchhh
Q 002515 74 VGLIQRGMIPEERRSNY------RCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV 137 (913)
Q Consensus 74 v~~i~~~~~~~~r~~aY------~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsi 137 (913)
|++++++++..+|+..+ .+||++||++.+ .+. ...+ .+.++||||+|.+
T Consensus 341 v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll-----~~~-------v~~~---~l~lvVIDE~Hrf 395 (681)
T PRK10917 341 VALLTGSLKGKERREILEAIASGEADIVIGTHALI-----QDD-------VEFH---NLGLVIIDEQHRF 395 (681)
T ss_pred EEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHh-----ccc-------chhc---ccceEEEechhhh
Confidence 99999999977766543 379999998754 221 1234 7899999999985
No 49
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=99.87 E-value=2.3e-21 Score=218.67 Aligned_cols=361 Identities=22% Similarity=0.251 Sum_probs=240.8
Q ss_pred CCchhHHHHHHHHhcCC---eEEecCCCchHHHHHHHHHH---------HHHc-----CCc--EEEEecCHHHHHHHHHH
Q 002515 2 RHFDVQIIGGAVLHDGS---IAEMKTGEGKTLVSTLAAYL---------NALT-----GEG--VHVVTVNDYLAQRDAEW 62 (913)
Q Consensus 2 rp~dvQl~g~l~L~~G~---IaEm~TGEGKTLva~lpa~l---------~AL~-----G~~--VhVvT~NdyLA~RDae~ 62 (913)
+|.++|-+..++...|+ +.-+.||+||||+|++|++- ..+. +.. ..||||+++||-+...-
T Consensus 203 ~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~~k~~k~~~LV~tPTRELa~QV~~H 282 (731)
T KOG0347|consen 203 RPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTSAKYVKPIALVVTPTRELAHQVKQH 282 (731)
T ss_pred CCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhhHHhccCcceeEEecChHHHHHHHHHH
Confidence 79999999999988896 78889999999999999985 2222 234 68999999999999999
Q ss_pred HHHHhhhcCCeEEEEcCCCC--HHHHHhccCCCeEEECCCcchhhHHHHhhccchhhhhccCCCCceEEEeecchhhhhc
Q 002515 63 MERVHRFLGLSVGLIQRGMI--PEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLID 140 (913)
Q Consensus 63 ~~~~y~~LGLsv~~i~~~~~--~~~r~~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiD 140 (913)
+..+..+-|++|..|+||+. .++|-..|..|||++||++| ...+... ...++.=+.+.++||||+|+|+-+
T Consensus 283 l~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRl-----weli~e~--n~~l~~~k~vkcLVlDEaDRmvek 355 (731)
T KOG0347|consen 283 LKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRL-----WELIEED--NTHLGNFKKVKCLVLDEADRMVEK 355 (731)
T ss_pred HHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHH-----HHHHHhh--hhhhhhhhhceEEEEccHHHHhhh
Confidence 99999999999999999988 45677888889999999996 2323221 111221227899999999999966
Q ss_pred cCCCceeccCCCCCCccchHHHHHHHHHhccCCCeEEeCCCCeeeccHhhHHHHHHHhccCCCCCCCCcHH---------
Q 002515 141 EGRNPLLISGEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWA--------- 211 (913)
Q Consensus 141 ea~tPLiiSg~~~~~~~~y~~~~~~v~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~l~--------- 211 (913)
. -|..+..+...|.+ ..+. .++|.+ .||++..+.
T Consensus 356 g----------------hF~Els~lL~~L~e-~~~~---~qrQTl-----------------VFSATlt~~~~~~~~~~~ 398 (731)
T KOG0347|consen 356 G----------------HFEELSKLLKHLNE-EQKN---RQRQTL-----------------VFSATLTLVLQQPLSSSR 398 (731)
T ss_pred c----------------cHHHHHHHHHHhhh-hhcc---cccceE-----------------EEEEEeehhhcChhHHhh
Confidence 5 45666677766642 1111 123333 344332211
Q ss_pred ----------HHHHHHHHHHHhhccCcceEEECCeEEEEeCCCCccccCcccChhhhHHHHhHhCCcccCCceeeeeeee
Q 002515 212 ----------RFVMNALKAKEFYRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITY 281 (913)
Q Consensus 212 ----------~~i~~Al~A~~l~~~d~dYiV~dg~V~iVD~~TGR~~~gr~ws~GLHQaieaKEgv~i~~e~~t~a~IT~ 281 (913)
.-|.+.+.--.+ .|+=.|||. +|+
T Consensus 399 k~~~k~~~~~~kiq~Lmk~ig~----------~~kpkiiD~---------------------------t~q--------- 432 (731)
T KOG0347|consen 399 KKKDKEDELNAKIQHLMKKIGF----------RGKPKIIDL---------------------------TPQ--------- 432 (731)
T ss_pred hccchhhhhhHHHHHHHHHhCc----------cCCCeeEec---------------------------Ccc---------
Confidence 112222211111 112233442 111
Q ss_pred hhHHhhcCcccccCCCcccHHHHHHHHhCCCeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHHHhcCCcEEEEec
Q 002515 282 QSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGST 361 (913)
Q Consensus 282 q~~F~~Y~kL~GmTGTa~te~~Ef~~iY~l~vv~IPt~~p~~R~d~~d~v~~t~~~k~~aii~ei~~~~~~grPVLI~t~ 361 (913)
++||++-.+-+ +..|| --+|+--..|.+. --| ..||||+
T Consensus 433 -------------~~ta~~l~Es~--------I~C~~----~eKD~ylyYfl~r---------------yPG-rTlVF~N 471 (731)
T KOG0347|consen 433 -------------SATASTLTESL--------IECPP----LEKDLYLYYFLTR---------------YPG-RTLVFCN 471 (731)
T ss_pred -------------hhHHHHHHHHh--------hcCCc----cccceeEEEEEee---------------cCC-ceEEEec
Confidence 12222211000 01121 1112111122221 123 4699999
Q ss_pred chhhHHHHHHHHHHCCCCeEEeccCCcchhhHHHHHHhcCCCccEEEEcCCCCCCcceecCCChhHHHHHHHHHHHHHHH
Q 002515 362 SVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQAGRKYAITISTNMAGRGTDIILGGNPKMLAKKIIEDRLLLLL 441 (913)
Q Consensus 362 Si~~SE~ls~~L~~~gi~~~vLnA~~k~~~~Ea~Iia~AG~~G~VTIATnmAGRGTDIkLgg~~~~~~~~~~~~~~~~~~ 441 (913)
||..+..|+-+|...+||.-.|||...+..|=..+-.-+-.+..|.|||+.|.||.||.
T Consensus 472 sId~vKRLt~~L~~L~i~p~~LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp--------------------- 530 (731)
T KOG0347|consen 472 SIDCVKRLTVLLNNLDIPPLPLHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIP--------------------- 530 (731)
T ss_pred hHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCC---------------------
Confidence 99999999999999999999999975455555566666667899999999999999994
Q ss_pred hhhhcccccccCCCCcchhhhhhhcchhHHHHHHHHHHHhhhccccCCchhhhhhhhhhhhhhhhhhhhhHHHHHHHHhh
Q 002515 442 TREALNVEVDDKTSSPKVLSEIKLGSSSLALLAKAALLAKYVGKAEGKSWTYQEAKSFFSESVEMSQSMNLKELQKLIDK 521 (913)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 (913)
T Consensus 531 -------------------------------------------------------------------------------- 530 (731)
T KOG0347|consen 531 -------------------------------------------------------------------------------- 530 (731)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hccCCCCChhhHHHHHHHhhhhhhcccccchhhhhcCceEEEeccCCCchhhHhhhhcccccCCCCCceeEEEeccchhh
Q 002515 522 QSAMYPLGPTVALTYLSVLKDCEVHCSNEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMF 601 (913)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerhes~RiD~QLrGRagRQGdpGss~f~lSLeD~l~ 601 (913)
+| =|||--.-+-+.-|--.+-||++|-+.-|-|.++++=++ +
T Consensus 531 -------------------------------~V-----~HVIHYqVPrtseiYVHRSGRTARA~~~Gvsvml~~P~e--~ 572 (731)
T KOG0347|consen 531 -------------------------------GV-----QHVIHYQVPRTSEIYVHRSGRTARANSEGVSVMLCGPQE--V 572 (731)
T ss_pred -------------------------------Cc-----ceEEEeecCCccceeEecccccccccCCCeEEEEeChHH--h
Confidence 22 389988888888899999999999999999999888666 2
Q ss_pred hhccCCchHHHHHHhhcCCCCCCCccchHHHHHHHHHHH
Q 002515 602 QKFSFDTSWAVDLISRITNDEDMPIEGDAIVRQLLGLQI 640 (913)
Q Consensus 602 ~~f~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~aQ~ 640 (913)
. ...++...+...++-|| -+...+.+.....
T Consensus 573 ~-------~~~KL~ktL~k~~dlpi-fPv~~~~m~~lke 603 (731)
T KOG0347|consen 573 G-------PLKKLCKTLKKKEDLPI-FPVETDIMDALKE 603 (731)
T ss_pred H-------HHHHHHHHHhhccCCCc-eeccHHHHHHHHH
Confidence 2 23456666666677776 3334444443333
No 50
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.86 E-value=1.1e-19 Score=224.78 Aligned_cols=128 Identities=22% Similarity=0.208 Sum_probs=96.3
Q ss_pred CCchhHHHHHHHHhcCC--eEEecCCCchHHHHHHHHHHHHHc----------CCcEEEEecCHHHHHHHHHHHH-----
Q 002515 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALT----------GEGVHVVTVNDYLAQRDAEWME----- 64 (913)
Q Consensus 2 rp~dvQl~g~l~L~~G~--IaEm~TGEGKTLva~lpa~l~AL~----------G~~VhVvT~NdyLA~RDae~~~----- 64 (913)
.|+|+|-.+...+++|+ |+.+.||+|||++|.+|++ ..|. |..|.+|+|+..||.+.+..+.
T Consensus 32 ~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil-~~l~~~~~~~~~~~~~~~LyIsPtraLa~di~~~L~~~l~~ 110 (876)
T PRK13767 32 TFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAII-DELFRLGREGELEDKVYCLYVSPLRALNNDIHRNLEEPLTE 110 (876)
T ss_pred CCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHH-HHHHhhccccCCCCCeEEEEEcCHHHHHHHHHHHHHHHHHH
Confidence 48999999999999998 9999999999999999997 3332 2358999999999998876544
Q ss_pred --HHhh----hc-CCeEEEEcCCCCHHHHHhcc--CCCeEEECCCcchhhHHHHhhccchhhhhccCCCCceEEEeecch
Q 002515 65 --RVHR----FL-GLSVGLIQRGMIPEERRSNY--RCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVD 135 (913)
Q Consensus 65 --~~y~----~L-GLsv~~i~~~~~~~~r~~aY--~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvD 135 (913)
.++. .+ +++|++.+++.+..+++... .+||+++|+..|. +.|.. ..-...++ .+.++||||||
T Consensus 111 i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~-~ll~~----~~~~~~l~---~l~~VVIDE~H 182 (876)
T PRK13767 111 IREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLA-ILLNS----PKFREKLR---TVKWVIVDEIH 182 (876)
T ss_pred HHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHH-HHhcC----hhHHHHHh---cCCEEEEechh
Confidence 2221 22 77889999998877765443 5799999998863 22221 10012345 89999999999
Q ss_pred hhh
Q 002515 136 SVL 138 (913)
Q Consensus 136 siL 138 (913)
.++
T Consensus 183 ~l~ 185 (876)
T PRK13767 183 SLA 185 (876)
T ss_pred hhc
Confidence 987
No 51
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.86 E-value=5.1e-20 Score=227.06 Aligned_cols=121 Identities=21% Similarity=0.242 Sum_probs=100.7
Q ss_pred CCchhHHHHHHHHhcC--------CeEEecCCCchHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCe
Q 002515 2 RHFDVQIIGGAVLHDG--------SIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLS 73 (913)
Q Consensus 2 rp~dvQl~g~l~L~~G--------~IaEm~TGEGKTLva~lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLs 73 (913)
.|+++|..++..+.++ ++++..||.|||++|++|++-....|+.|.|++|+..||.|-++.+..++..++++
T Consensus 451 ~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~ 530 (926)
T TIGR00580 451 EETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLDGKQVAVLVPTTLLAQQHFETFKERFANFPVT 530 (926)
T ss_pred CCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHhCCeEEEEeCcHHHHHHHHHHHHHHhccCCcE
Confidence 4889999999988764 49999999999999999998666789999999999999999999999999999999
Q ss_pred EEEEcCCCCHHHHHhcc------CCCeEEECCCcchhhHHHHhhccchhhhhccCCCCceEEEeecchhh
Q 002515 74 VGLIQRGMIPEERRSNY------RCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV 137 (913)
Q Consensus 74 v~~i~~~~~~~~r~~aY------~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsi 137 (913)
++.+.+..+..+++... .+||++||+. .|... ...+ .+.++||||+|.+
T Consensus 531 v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~-----ll~~~-------v~f~---~L~llVIDEahrf 585 (926)
T TIGR00580 531 IELLSRFRSAKEQNEILKELASGKIDILIGTHK-----LLQKD-------VKFK---DLGLLIIDEEQRF 585 (926)
T ss_pred EEEEeccccHHHHHHHHHHHHcCCceEEEchHH-----HhhCC-------CCcc---cCCEEEeeccccc
Confidence 99998887766554322 4799999983 23211 2234 7899999999984
No 52
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.85 E-value=5.1e-20 Score=206.13 Aligned_cols=279 Identities=19% Similarity=0.241 Sum_probs=202.4
Q ss_pred CCchhHHHHHHHHhcCC--eEEecCCCchHHHHHHHHHHHHHc------CCc--EEEEecCHHHHHHHHHHHHHHhhhcC
Q 002515 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALT------GEG--VHVVTVNDYLAQRDAEWMERVHRFLG 71 (913)
Q Consensus 2 rp~dvQl~g~l~L~~G~--IaEm~TGEGKTLva~lpa~l~AL~------G~~--VhVvT~NdyLA~RDae~~~~~y~~LG 71 (913)
.||++|-.+.+..+.|+ |.-.+||+|||.+|+.|+..+-+. |.+ ..|++|+++||.+.+.+...|.+..|
T Consensus 245 kptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi~vilvPTrela~Qi~~eaKkf~K~yg 324 (731)
T KOG0339|consen 245 KPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVILVPTRELASQIFSEAKKFGKAYG 324 (731)
T ss_pred cCCcccccccccccccccchheeeccCcchhHHHHHHHHHhcchhhhcCCCCCeEEEEeccHHHHHHHHHHHHHhhhhcc
Confidence 58999999999888998 777899999999999999977543 443 46899999999999999999999999
Q ss_pred CeEEEEcCCCCHHHHH--hccCCCeEEECCCcchhhHHHHhhccchhhhhccCCCCceEEEeecchhhhhccCCCceecc
Q 002515 72 LSVGLIQRGMIPEERR--SNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLIS 149 (913)
Q Consensus 72 Lsv~~i~~~~~~~~r~--~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~tPLiiS 149 (913)
|.+.+++++.+..++- ..-+|.|+++|++++ .|.+... ...++ ...|+++||+|+|+ |.+..|
T Consensus 325 l~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRl-----id~VkmK--atn~~---rvS~LV~DEadrmf-dmGfe~---- 389 (731)
T KOG0339|consen 325 LRVVAVYGGGSKWEQSKELKEGAEIVVATPGRL-----IDMVKMK--ATNLS---RVSYLVLDEADRMF-DMGFEP---- 389 (731)
T ss_pred ceEEEeecCCcHHHHHHhhhcCCeEEEechHHH-----HHHHHhh--cccce---eeeEEEEechhhhh-ccccHH----
Confidence 9999999998865544 345689999999995 4544332 22344 68999999999998 766544
Q ss_pred CCCCCCccchHHHHHHHHHhccCCCeEEeCCCCeeeccHhhHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHhhccCcc
Q 002515 150 GEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQ 229 (913)
Q Consensus 150 g~~~~~~~~y~~~~~~v~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~l~~~i~~Al~A~~l~~~d~d 229 (913)
++..|...+.+ ++|.+ +|+++..+ -|..+ |+.++.
T Consensus 390 -----------qVrSI~~hirp---------drQtl-----------------lFsaTf~~--kIe~l--ard~L~---- 424 (731)
T KOG0339|consen 390 -----------QVRSIKQHIRP---------DRQTL-----------------LFSATFKK--KIEKL--ARDILS---- 424 (731)
T ss_pred -----------HHHHHHhhcCC---------cceEE-----------------EeeccchH--HHHHH--HHHHhc----
Confidence 77777777765 46665 67766532 23322 223221
Q ss_pred eEEECCeEEEEeCCCCccccCcccChhhhHHHHhHhCCcccCCceeeeeeeehhHHhhcCcccccCCCcccHHHHHHHHh
Q 002515 230 YIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMF 309 (913)
Q Consensus 230 YiV~dg~V~iVD~~TGR~~~gr~ws~GLHQaieaKEgv~i~~e~~t~a~IT~q~~F~~Y~kL~GmTGTa~te~~Ef~~iY 309 (913)
+-|.+|- |.+ |-|++
T Consensus 425 -----dpVrvVq---g~v------------------------------------------------gean~--------- 439 (731)
T KOG0339|consen 425 -----DPVRVVQ---GEV------------------------------------------------GEANE--------- 439 (731)
T ss_pred -----CCeeEEE---eeh------------------------------------------------hcccc---------
Confidence 1111111 100 00100
Q ss_pred CCCeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEeccCCcc
Q 002515 310 QMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKY 389 (913)
Q Consensus 310 ~l~vv~IPt~~p~~R~d~~d~v~~t~~~k~~aii~ei~~~~~~grPVLI~t~Si~~SE~ls~~L~~~gi~~~vLnA~~k~ 389 (913)
+ ....-.|+.+...||..++..+.+....| .||||..-...+|.+++.|+-.|+.+..||+...+
T Consensus 440 --d------------ITQ~V~V~~s~~~Kl~wl~~~L~~f~S~g-kvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdq 504 (731)
T KOG0339|consen 440 --D------------ITQTVSVCPSEEKKLNWLLRHLVEFSSEG-KVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQ 504 (731)
T ss_pred --c------------hhheeeeccCcHHHHHHHHHHhhhhccCC-cEEEEEeccCCHHHHHHHhccccceeeeecCchhh
Confidence 0 00001246788999999998888876665 89999999999999999999999999999998656
Q ss_pred hhhHHHHHHhcCCCccEEEEcCCCCCCccee
Q 002515 390 AAREAETVAQAGRKYAITISTNMAGRGTDII 420 (913)
Q Consensus 390 ~~~Ea~Iia~AG~~G~VTIATnmAGRGTDIk 420 (913)
.+|-..+-.---....|.|||+.|.||+||.
T Consensus 505 a~rn~~ls~fKkk~~~VlvatDvaargldI~ 535 (731)
T KOG0339|consen 505 AERNEVLSKFKKKRKPVLVATDVAARGLDIP 535 (731)
T ss_pred HHHHHHHHHHhhcCCceEEEeeHhhcCCCcc
Confidence 5554334332222468999999999999997
No 53
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.85 E-value=2e-19 Score=215.65 Aligned_cols=121 Identities=17% Similarity=0.257 Sum_probs=102.0
Q ss_pred CCchhHHHHHHHHhcC--------CeEEecCCCchHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCe
Q 002515 2 RHFDVQIIGGAVLHDG--------SIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLS 73 (913)
Q Consensus 2 rp~dvQl~g~l~L~~G--------~IaEm~TGEGKTLva~lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLs 73 (913)
.|++.|.-+...+..+ ++++..||+|||++|.+|++.....|..|.+++|+..||.+-++.+..++..+|++
T Consensus 235 ~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~ 314 (630)
T TIGR00643 235 KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEAGYQVALMAPTEILAEQHYNSLRNLLAPLGIE 314 (630)
T ss_pred CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEECCHHHHHHHHHHHHHHHhcccCcE
Confidence 5789999998877655 49999999999999999998666788999999999999999999999999999999
Q ss_pred EEEEcCCCCHHHHHhcc------CCCeEEECCCcchhhHHHHhhccchhhhhccCCCCceEEEeecchhh
Q 002515 74 VGLIQRGMIPEERRSNY------RCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV 137 (913)
Q Consensus 74 v~~i~~~~~~~~r~~aY------~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsi 137 (913)
+++++++++..+|+... .+||++||++.+ .+.+ ... .+.++||||+|.+
T Consensus 315 v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll-----~~~~-------~~~---~l~lvVIDEaH~f 369 (630)
T TIGR00643 315 VALLTGSLKGKRRKELLETIASGQIHLVVGTHALI-----QEKV-------EFK---RLALVIIDEQHRF 369 (630)
T ss_pred EEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHH-----hccc-------ccc---ccceEEEechhhc
Confidence 99999999877765433 469999999753 2221 234 7899999999985
No 54
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=99.84 E-value=6.9e-20 Score=219.96 Aligned_cols=281 Identities=20% Similarity=0.254 Sum_probs=205.3
Q ss_pred CCchhHHHHHHHHhcCC--eEEecCCCchHHHHHHHHHHHHHc--------CCcEEEEecCHHHHHHHHHHHHHHhhhcC
Q 002515 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALT--------GEGVHVVTVNDYLAQRDAEWMERVHRFLG 71 (913)
Q Consensus 2 rp~dvQl~g~l~L~~G~--IaEm~TGEGKTLva~lpa~l~AL~--------G~~VhVvT~NdyLA~RDae~~~~~y~~LG 71 (913)
+|.|+|-.+++++..|+ |...+||+|||++|.||.+.+-+. |--..||+||+.||.|..+|+..|...+|
T Consensus 387 k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gdGPi~li~aPtrela~QI~r~~~kf~k~l~ 466 (997)
T KOG0334|consen 387 KPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGPIALILAPTRELAMQIHREVRKFLKLLG 466 (997)
T ss_pred CCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCChhhCCCceEEEEcCCHHHHHHHHHHHHHHHhhcC
Confidence 68999999999999999 999999999999999999965443 34568999999999999999999999999
Q ss_pred CeEEEEcCCCCHHHHH--hccCCCeEEECCCcchhhHHHHhhccchhhhhccCCCCceEEEeecchhhhhccCCCceecc
Q 002515 72 LSVGLIQRGMIPEERR--SNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLIS 149 (913)
Q Consensus 72 Lsv~~i~~~~~~~~r~--~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~tPLiiS 149 (913)
+.+.|++++....+.. ..-.|+|+.||++.+ .|.| +.+. ..+. +-|...|++.||+|.|+ |.+..|.+
T Consensus 467 ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRm-iD~l----~~n~-grvt-nlrR~t~lv~deaDrmf-dmgfePq~-- 536 (997)
T KOG0334|consen 467 IRVVCVYGGSGISQQIAELKRGAEIVVCTPGRM-IDIL----CANS-GRVT-NLRRVTYLVLDEADRMF-DMGFEPQI-- 536 (997)
T ss_pred ceEEEecCCccHHHHHHHHhcCCceEEeccchh-hhhH----hhcC-Cccc-cccccceeeechhhhhh-eeccCccc--
Confidence 9999999987644332 334599999999996 4444 3322 1222 12267799999999999 99888832
Q ss_pred CCCCCCccchHHHHHHHHHhccCCCeEEeCCCCeeeccHhhHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHhhccCcc
Q 002515 150 GEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQ 229 (913)
Q Consensus 150 g~~~~~~~~y~~~~~~v~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~l~~~i~~Al~A~~l~~~d~d 229 (913)
-.+++.+.+ .||.. +|+++.+ +.+. ++ |..++++-+.
T Consensus 537 -------------~~Ii~nlrp---------drQtv-----------------lfSatfp--r~m~-~l-a~~vl~~Pve 573 (997)
T KOG0334|consen 537 -------------TRILQNLRP---------DRQTV-----------------LFSATFP--RSME-AL-ARKVLKKPVE 573 (997)
T ss_pred -------------chHHhhcch---------hhhhh-----------------hhhhhhh--HHHH-HH-HHHhhcCCee
Confidence 224555532 33333 4555542 2222 22 3343333332
Q ss_pred eEEECCeEEEEeCCCCccccCcccChhhhHHHHhHhCCcccCCceeeeeeeehhHHhhcCcccccCCCcccHHHHHHHHh
Q 002515 230 YIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMF 309 (913)
Q Consensus 230 YiV~dg~V~iVD~~TGR~~~gr~ws~GLHQaieaKEgv~i~~e~~t~a~IT~q~~F~~Y~kL~GmTGTa~te~~Ef~~iY 309 (913)
+||+ ..+++..+
T Consensus 574 --------iiv~-~~svV~k~----------------------------------------------------------- 585 (997)
T KOG0334|consen 574 --------IIVG-GRSVVCKE----------------------------------------------------------- 585 (997)
T ss_pred --------EEEc-cceeEecc-----------------------------------------------------------
Confidence 2233 11111111
Q ss_pred CCCeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEeccCCcc
Q 002515 310 QMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKY 389 (913)
Q Consensus 310 ~l~vv~IPt~~p~~R~d~~d~v~~t~~~k~~aii~ei~~~~~~grPVLI~t~Si~~SE~ls~~L~~~gi~~~vLnA~~k~ 389 (913)
....-.|-..+.+|+..+.+.+.+..+ .-+++||+.+.+.+..+.+.|.+.|++|..||+...+
T Consensus 586 ---------------V~q~v~V~~~e~eKf~kL~eLl~e~~e-~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q 649 (997)
T KOG0334|consen 586 ---------------VTQVVRVCAIENEKFLKLLELLGERYE-DGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQ 649 (997)
T ss_pred ---------------ceEEEEEecCchHHHHHHHHHHHHHhh-cCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCch
Confidence 001112334578999998888888776 4599999999999999999999999999999999778
Q ss_pred hhhHHHHHH-hcCCCccEEEEcCCCCCCccee
Q 002515 390 AAREAETVA-QAGRKYAITISTNMAGRGTDII 420 (913)
Q Consensus 390 ~~~Ea~Iia-~AG~~G~VTIATnmAGRGTDIk 420 (913)
+.++..|.. +.| +-.++|||+.+.||+|++
T Consensus 650 ~dR~sti~dfK~~-~~~LLvaTsvvarGLdv~ 680 (997)
T KOG0334|consen 650 HDRSSTIEDFKNG-VVNLLVATSVVARGLDVK 680 (997)
T ss_pred HHHHhHHHHHhcc-CceEEEehhhhhcccccc
Confidence 888877776 777 567999999999999996
No 55
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.84 E-value=4.8e-19 Score=222.54 Aligned_cols=259 Identities=16% Similarity=0.139 Sum_probs=175.9
Q ss_pred CCchhHHHHHHHHhcC--------CeEEecCCCchHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCe
Q 002515 2 RHFDVQIIGGAVLHDG--------SIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLS 73 (913)
Q Consensus 2 rp~dvQl~g~l~L~~G--------~IaEm~TGEGKTLva~lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLs 73 (913)
.|+++|..+...+..| .+++..||.|||++|+++++.....|+.|.|++|+..||.|-++.+...+..++++
T Consensus 600 ~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~ 679 (1147)
T PRK10689 600 ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYDNFRDRFANWPVR 679 (1147)
T ss_pred CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHhhccCCce
Confidence 5889999999988765 49999999999999999998766779999999999999999999999999888999
Q ss_pred EEEEcCCCCHHHHHhcc------CCCeEEECCCcchhhHHHHhhccchhhhhccCCCCceEEEeecchhhhhccCCCcee
Q 002515 74 VGLIQRGMIPEERRSNY------RCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLL 147 (913)
Q Consensus 74 v~~i~~~~~~~~r~~aY------~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~tPLi 147 (913)
+.++.+..+..+++... .+||++||+. .|+.. .... .+.++||||+|.+-.
T Consensus 680 i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~-----lL~~~-------v~~~---~L~lLVIDEahrfG~-------- 736 (1147)
T PRK10689 680 IEMLSRFRSAKEQTQILAEAAEGKIDILIGTHK-----LLQSD-------VKWK---DLGLLIVDEEHRFGV-------- 736 (1147)
T ss_pred EEEEECCCCHHHHHHHHHHHHhCCCCEEEECHH-----HHhCC-------CCHh---hCCEEEEechhhcch--------
Confidence 99998887776665432 4799999984 23211 1223 789999999999610
Q ss_pred ccCCCCCCccchHHHHHHHHHhccCCCeEEeCCCCeeeccHhhHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHhhccC
Q 002515 148 ISGEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRD 227 (913)
Q Consensus 148 iSg~~~~~~~~y~~~~~~v~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~l~~~i~~Al~A~~l~~~d 227 (913)
.. ...+..+.. +.+
T Consensus 737 ------------~~-~e~lk~l~~---------~~q-------------------------------------------- 750 (1147)
T PRK10689 737 ------------RH-KERIKAMRA---------DVD-------------------------------------------- 750 (1147)
T ss_pred ------------hH-HHHHHhcCC---------CCc--------------------------------------------
Confidence 00 011111110 111
Q ss_pred cceEEECCeEEEEeCCCCccccCcccChhhhHHHHhHhCCcccCCceeeeeeeehhHHhhcCcccccCCCcccHHHHHH-
Q 002515 228 VQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFL- 306 (913)
Q Consensus 228 ~dYiV~dg~V~iVD~~TGR~~~gr~ws~GLHQaieaKEgv~i~~e~~t~a~IT~q~~F~~Y~kL~GmTGTa~te~~Ef~- 306 (913)
+.+||+|.......+.
T Consensus 751 ---------------------------------------------------------------vLl~SATpiprtl~l~~ 767 (1147)
T PRK10689 751 ---------------------------------------------------------------ILTLTATPIPRTLNMAM 767 (1147)
T ss_pred ---------------------------------------------------------------EEEEcCCCCHHHHHHHH
Confidence 2344555432221111
Q ss_pred -HHhCCCeEEeCCCCCcccccCCCeEEe-ChhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHC--CCCeEE
Q 002515 307 -KMFQMPVIEVPTNLPNIRVDLPIQSFA-TARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQ--GIPHNV 382 (913)
Q Consensus 307 -~iY~l~vv~IPt~~p~~R~d~~d~v~~-t~~~k~~aii~ei~~~~~~grPVLI~t~Si~~SE~ls~~L~~~--gi~~~v 382 (913)
...++.++..|+.. |......+.. .......++..++ ..|..|+|||++++.++.+++.|++. ++++.+
T Consensus 768 ~gl~d~~~I~~~p~~---r~~v~~~~~~~~~~~~k~~il~el----~r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~ 840 (1147)
T PRK10689 768 SGMRDLSIIATPPAR---RLAVKTFVREYDSLVVREAILREI----LRGGQVYYLYNDVENIQKAAERLAELVPEARIAI 840 (1147)
T ss_pred hhCCCcEEEecCCCC---CCCceEEEEecCcHHHHHHHHHHH----hcCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEE
Confidence 11223333344321 1111111111 1112233444443 34667999999999999999999987 788999
Q ss_pred eccCCcchhhHHHHHH-hcCCCccEEEEcCCCCCCccee
Q 002515 383 LNARPKYAAREAETVA-QAGRKYAITISTNMAGRGTDII 420 (913)
Q Consensus 383 LnA~~k~~~~Ea~Iia-~AG~~G~VTIATnmAGRGTDIk 420 (913)
+|++..+.+++..+-+ ..| .-.|.|||++++||.||.
T Consensus 841 lHG~m~q~eRe~im~~Fr~G-k~~VLVaTdIierGIDIP 878 (1147)
T PRK10689 841 GHGQMRERELERVMNDFHHQ-RFNVLVCTTIIETGIDIP 878 (1147)
T ss_pred EeCCCCHHHHHHHHHHHHhc-CCCEEEECchhhcccccc
Confidence 9998666666655555 566 568999999999999994
No 56
>PRK00254 ski2-like helicase; Provisional
Probab=99.81 E-value=4.5e-18 Score=206.88 Aligned_cols=125 Identities=18% Similarity=0.202 Sum_probs=97.0
Q ss_pred CCchhHHHHHHH-HhcCC--eEEecCCCchHHHHHHHHHHHHH-cCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEE
Q 002515 2 RHFDVQIIGGAV-LHDGS--IAEMKTGEGKTLVSTLAAYLNAL-TGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLI 77 (913)
Q Consensus 2 rp~dvQl~g~l~-L~~G~--IaEm~TGEGKTLva~lpa~l~AL-~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLsv~~i 77 (913)
.|||+|..+... +++|+ |+.+.||+|||++|.+|+.-..+ .|.++.+++|+..||.+-++.+..+ ..+|++|+..
T Consensus 23 ~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~~~~~l~l~P~~aLa~q~~~~~~~~-~~~g~~v~~~ 101 (720)
T PRK00254 23 ELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLREGGKAVYLVPLKALAEEKYREFKDW-EKLGLRVAMT 101 (720)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHhcCCeEEEEeChHHHHHHHHHHHHHH-hhcCCEEEEE
Confidence 589999999874 66766 99999999999999999974444 4678999999999999999988874 5689999999
Q ss_pred cCCCCHHHHHhccCCCeEEECCCcchhhHHHHhhccchhhhhccCCCCceEEEeecchhhh
Q 002515 78 QRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (913)
Q Consensus 78 ~~~~~~~~r~~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiL 138 (913)
+++.+...+. .-.+||+.+|+..+ |.|..+ . ....+ .+.++||||+|.+.
T Consensus 102 ~Gd~~~~~~~-~~~~~IiV~Tpe~~--~~ll~~---~--~~~l~---~l~lvViDE~H~l~ 151 (720)
T PRK00254 102 TGDYDSTDEW-LGKYDIIIATAEKF--DSLLRH---G--SSWIK---DVKLVVADEIHLIG 151 (720)
T ss_pred eCCCCCchhh-hccCCEEEEcHHHH--HHHHhC---C--chhhh---cCCEEEEcCcCccC
Confidence 9887654332 23579999999874 333211 1 12234 79999999999875
No 57
>PRK02362 ski2-like helicase; Provisional
Probab=99.80 E-value=5.8e-18 Score=206.45 Aligned_cols=128 Identities=24% Similarity=0.254 Sum_probs=98.6
Q ss_pred CCchhHHHHHHH-HhcCC--eEEecCCCchHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEc
Q 002515 2 RHFDVQIIGGAV-LHDGS--IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQ 78 (913)
Q Consensus 2 rp~dvQl~g~l~-L~~G~--IaEm~TGEGKTLva~lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLsv~~i~ 78 (913)
.|||+|..+... +++|+ |+.+.||.|||++|.+|+.-....|..+.+|+|+..||.+-++.+..+. .+|++|+..+
T Consensus 23 ~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~~~kal~i~P~raLa~q~~~~~~~~~-~~g~~v~~~t 101 (737)
T PRK02362 23 ELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIARGGKALYIVPLRALASEKFEEFERFE-ELGVRVGIST 101 (737)
T ss_pred cCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhcCCcEEEEeChHHHHHHHHHHHHHhh-cCCCEEEEEe
Confidence 589999999876 66666 9999999999999999987444568899999999999999999998754 4699999999
Q ss_pred CCCCHHHHHhccCCCeEEECCCcchhhHHHHhhccchhhhhccCCCCceEEEeecchhhhhccC
Q 002515 79 RGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEG 142 (913)
Q Consensus 79 ~~~~~~~r~~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea 142 (913)
++.+...+. .-.+||+++|+..+ |.|..+ . ....+ .+.++||||+|.++ |..
T Consensus 102 Gd~~~~~~~-l~~~~IiV~Tpek~--~~llr~---~--~~~l~---~v~lvViDE~H~l~-d~~ 153 (737)
T PRK02362 102 GDYDSRDEW-LGDNDIIVATSEKV--DSLLRN---G--APWLD---DITCVVVDEVHLID-SAN 153 (737)
T ss_pred CCcCccccc-cCCCCEEEECHHHH--HHHHhc---C--hhhhh---hcCEEEEECccccC-CCc
Confidence 887643322 22479999999874 443221 1 11234 79999999999875 543
No 58
>PRK01172 ski2-like helicase; Provisional
Probab=99.80 E-value=5.7e-18 Score=204.59 Aligned_cols=129 Identities=23% Similarity=0.271 Sum_probs=99.6
Q ss_pred CCchhHHHHHHHHhcCC--eEEecCCCchHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcC
Q 002515 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQR 79 (913)
Q Consensus 2 rp~dvQl~g~l~L~~G~--IaEm~TGEGKTLva~lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLsv~~i~~ 79 (913)
.+|++|--+.-.+.+|+ |+.+.||.|||+++.+|++-....|.++.+++|...||.+-++.+..+. .+|++|+...+
T Consensus 22 ~l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~~~k~v~i~P~raLa~q~~~~~~~l~-~~g~~v~~~~G 100 (674)
T PRK01172 22 ELYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLAGLKSIYIVPLRSLAMEKYEELSRLR-SLGMRVKISIG 100 (674)
T ss_pred CCCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHhCCcEEEEechHHHHHHHHHHHHHHh-hcCCeEEEEeC
Confidence 47899999999998887 9999999999999999887444568889999999999999999998854 58999998888
Q ss_pred CCCHHHHHhccCCCeEEECCCcchhhHHHHhhccchhhhhccCCCCceEEEeecchhhhhccCC
Q 002515 80 GMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGR 143 (913)
Q Consensus 80 ~~~~~~r~~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~ 143 (913)
+.+...+. .-.+||+++|+..+ |.+..+ . ..... .++++||||||.+. |+.+
T Consensus 101 ~~~~~~~~-~~~~dIiv~Tpek~--~~l~~~---~--~~~l~---~v~lvViDEaH~l~-d~~r 152 (674)
T PRK01172 101 DYDDPPDF-IKRYDVVILTSEKA--DSLIHH---D--PYIIN---DVGLIVADEIHIIG-DEDR 152 (674)
T ss_pred CCCCChhh-hccCCEEEECHHHH--HHHHhC---C--hhHHh---hcCEEEEecchhcc-CCCc
Confidence 76543222 23579999999873 433211 1 12234 79999999999764 5433
No 59
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.80 E-value=7.8e-18 Score=197.01 Aligned_cols=119 Identities=15% Similarity=0.051 Sum_probs=84.7
Q ss_pred CCchhHHHHHHHHhcCC--eEEecCCCchHHHHHHHHHHHHHcCC-cEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEc
Q 002515 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALTGE-GVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQ 78 (913)
Q Consensus 2 rp~dvQl~g~l~L~~G~--IaEm~TGEGKTLva~lpa~l~AL~G~-~VhVvT~NdyLA~RDae~~~~~y~~LGLsv~~i~ 78 (913)
.|+|.|.-+...++.++ |+.+.||.|||+++.+.+....-.++ .|.|++|+..|+.|-.+.+..+...-...++.+.
T Consensus 114 ~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~~~~~~~~~~~vLilvpt~eL~~Q~~~~l~~~~~~~~~~~~~i~ 193 (501)
T PHA02558 114 EPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLSRYYLENYEGKVLIIVPTTSLVTQMIDDFVDYRLFPREAMHKIY 193 (501)
T ss_pred CCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHHHhcCCCeEEEEECcHHHHHHHHHHHHHhccccccceeEEe
Confidence 68899999887766544 99999999999987654321111334 8999999999999988888876654445555555
Q ss_pred CCCCHHHHHhccCCCeEEECCCcchhhHHHHhhccchhhhhccCCCCceEEEeecchhhh
Q 002515 79 RGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (913)
Q Consensus 79 ~~~~~~~r~~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiL 138 (913)
++... ...++|+++|...+. ++. . .... .++++||||||.+.
T Consensus 194 ~g~~~-----~~~~~I~VaT~qsl~-~~~--------~-~~~~---~~~~iIvDEaH~~~ 235 (501)
T PHA02558 194 SGTAK-----DTDAPIVVSTWQSAV-KQP--------K-EWFD---QFGMVIVDECHLFT 235 (501)
T ss_pred cCccc-----CCCCCEEEeeHHHHh-hch--------h-hhcc---ccCEEEEEchhccc
Confidence 55432 135799999997752 111 1 1234 79999999999985
No 60
>PRK14701 reverse gyrase; Provisional
Probab=99.79 E-value=8.1e-18 Score=216.35 Aligned_cols=125 Identities=21% Similarity=0.272 Sum_probs=101.8
Q ss_pred CCchhHHHHHHHHhcCC--eEEecCCCchHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcC--CeEEEE
Q 002515 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLG--LSVGLI 77 (913)
Q Consensus 2 rp~dvQl~g~l~L~~G~--IaEm~TGEGKTLva~lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LG--Lsv~~i 77 (913)
.|+++|..++..+++|+ ++.|.||.|||+.+.+++...+..|..+.||+|+..||.|.++.+..+...+| +.+.++
T Consensus 79 ~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~~~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~ 158 (1638)
T PRK14701 79 EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLALKGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYY 158 (1638)
T ss_pred CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHhcCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEE
Confidence 48999999999999998 99999999999977777766677898999999999999999999999998875 566778
Q ss_pred cCCCCHHHHHhcc------CCCeEEECCCcchhhHHHHhhccchhhhhccCCCCceEEEeecchhhh
Q 002515 78 QRGMIPEERRSNY------RCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (913)
Q Consensus 78 ~~~~~~~~r~~aY------~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiL 138 (913)
.++++..++.... .+||+|+|++.+ .+++.. .... .++++||||||+||
T Consensus 159 ~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL-----~~~~~~----l~~~---~i~~iVVDEAD~ml 213 (1638)
T PRK14701 159 HSNLRKKEKEEFLERIENGDFDILVTTAQFL-----ARNFPE----MKHL---KFDFIFVDDVDAFL 213 (1638)
T ss_pred eCCCCHHHHHHHHHHHhcCCCCEEEECCchh-----HHhHHH----HhhC---CCCEEEEECceecc
Confidence 8888877664321 379999999854 333321 1113 79999999999998
No 61
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.78 E-value=2.7e-17 Score=199.16 Aligned_cols=124 Identities=17% Similarity=0.107 Sum_probs=89.6
Q ss_pred CCchhHHHHHHHHhcCC---eEEecCCCchHHHHHHHHHHHHHc----CCcEEE-EecCHHHHHHHHHHHHHHhhhc---
Q 002515 2 RHFDVQIIGGAVLHDGS---IAEMKTGEGKTLVSTLAAYLNALT----GEGVHV-VTVNDYLAQRDAEWMERVHRFL--- 70 (913)
Q Consensus 2 rp~dvQl~g~l~L~~G~---IaEm~TGEGKTLva~lpa~l~AL~----G~~VhV-vT~NdyLA~RDae~~~~~y~~L--- 70 (913)
.|||+|.-.+..+..|+ ++++.||+|||.+++++.. ++. .-+..| ++++++||.+-++.+..+.+.+
T Consensus 15 ~PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll--~~~~~~~~~~rLv~~vPtReLa~Qi~~~~~~~~k~l~~~ 92 (844)
T TIGR02621 15 SPFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLL--AVEIGAKVPRRLVYVVNRRTVVDQVTEEAEKIGERLPDV 92 (844)
T ss_pred CCCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhc--cccccccccceEEEeCchHHHHHHHHHHHHHHHHHhccc
Confidence 39999999999999997 4579999999986653332 331 123555 6699999999999999999877
Q ss_pred --------------------CCeEEEEcCCCCH--HHHHhccCCCeEEECCCcchhhHHHHhhccc-----hh----h-h
Q 002515 71 --------------------GLSVGLIQRGMIP--EERRSNYRCDITYTNNSELGFDYLRDNLAAN-----SE----Q-L 118 (913)
Q Consensus 71 --------------------GLsv~~i~~~~~~--~~r~~aY~~DI~YgT~~e~~fDyLrD~l~~~-----~~----~-~ 118 (913)
+++|.++.|+.+. +.+...-.++|+.|| .|.+..+...+ .. . -
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT-----~D~i~sr~L~~gYg~~~~~~pi~ag 167 (844)
T TIGR02621 93 PEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGT-----VDMIGSRLLFSGYGCGFKSRPLHAG 167 (844)
T ss_pred chhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEEC-----HHHHcCCccccccccccccccchhh
Confidence 5899999998664 344445568999999 46564433210 00 0 0
Q ss_pred hccCCCCceEEEeecch
Q 002515 119 VMRWPKPFHFAIVDEVD 135 (913)
Q Consensus 119 v~r~~R~~~~aIVDEvD 135 (913)
.+. ...++|+||||
T Consensus 168 ~L~---~v~~LVLDEAD 181 (844)
T TIGR02621 168 FLG---QDALIVHDEAH 181 (844)
T ss_pred hhc---cceEEEEehhh
Confidence 123 67899999999
No 62
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=99.78 E-value=1e-17 Score=177.47 Aligned_cols=275 Identities=14% Similarity=0.230 Sum_probs=189.0
Q ss_pred CCchhHHHHHHHHhcCC--eEEecCCCchHHHHHHHHHHHHHc-C---CcEEEEecCHHHHHHHHHHHHHHhhhcCCeEE
Q 002515 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALT-G---EGVHVVTVNDYLAQRDAEWMERVHRFLGLSVG 75 (913)
Q Consensus 2 rp~dvQl~g~l~L~~G~--IaEm~TGEGKTLva~lpa~l~AL~-G---~~VhVvT~NdyLA~RDae~~~~~y~~LGLsv~ 75 (913)
+|-.+|--+++.+++|+ |||.+.|.|||.++++-.. .++. + -.|.|++|+++||.+.-+-...+...+|+.|.
T Consensus 49 kPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vl-q~~d~~~r~tQ~lilsPTRELa~Qi~~vi~alg~~mnvq~h 127 (400)
T KOG0328|consen 49 KPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVL-QSLDISVRETQALILSPTRELAVQIQKVILALGDYMNVQCH 127 (400)
T ss_pred CchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeee-eecccccceeeEEEecChHHHHHHHHHHHHHhcccccceEE
Confidence 57788999999999999 9999999999999888774 4432 2 37899999999999999999999999999998
Q ss_pred EEcCCCC--HHHHHhccCCCeEEECCCcchhhHHHHhhccchhhhhccCCCCceEEEeecchhhhhccCCCceeccCCCC
Q 002515 76 LIQRGMI--PEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEAS 153 (913)
Q Consensus 76 ~i~~~~~--~~~r~~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~tPLiiSg~~~ 153 (913)
...++.+ .+.|+..|+++++-|||+++ +|.++.+. +| .|....+|+||+|-|| +.+.
T Consensus 128 acigg~n~gedikkld~G~hvVsGtPGrv-~dmikr~~--------L~-tr~vkmlVLDEaDemL-~kgf---------- 186 (400)
T KOG0328|consen 128 ACIGGKNLGEDIKKLDYGQHVVSGTPGRV-LDMIKRRS--------LR-TRAVKMLVLDEADEML-NKGF---------- 186 (400)
T ss_pred EEecCCccchhhhhhcccceEeeCCCchH-HHHHHhcc--------cc-ccceeEEEeccHHHHH-HhhH----------
Confidence 7776644 66788889999999999997 77665432 22 3489999999999998 3321
Q ss_pred CCccchHHHHHHHHHhccCCCeEEeCCCCeeeccHhhHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHhhccCcceEEE
Q 002515 154 KDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVR 233 (913)
Q Consensus 154 ~~~~~y~~~~~~v~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~l~~~i~~Al~A~~l~~~d~dYiV~ 233 (913)
-.++..+-+.|.+ .-++. +++++. .+-|.... ..|-
T Consensus 187 -----k~Qiydiyr~lp~---------~~Qvv-----------------~~SATl--p~eilemt---~kfm-------- 222 (400)
T KOG0328|consen 187 -----KEQIYDIYRYLPP---------GAQVV-----------------LVSATL--PHEILEMT---EKFM-------- 222 (400)
T ss_pred -----HHHHHHHHHhCCC---------CceEE-----------------EEeccC--cHHHHHHH---HHhc--------
Confidence 1244444455544 33443 334332 11121111 1111
Q ss_pred CCeEEEEeCCCCccccCcccChhhhHHHHhHhCCcccCCceeeeeeeehhHHhhcCcccccCCCcccHHHHHHHHhCCCe
Q 002515 234 NGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPV 313 (913)
Q Consensus 234 dg~V~iVD~~TGR~~~gr~ws~GLHQaieaKEgv~i~~e~~t~a~IT~q~~F~~Y~kL~GmTGTa~te~~Ef~~iY~l~v 313 (913)
.+-|.|.-.-.+-..+ |+.|
T Consensus 223 tdpvrilvkrdeltlE------gIKq------------------------------------------------------ 242 (400)
T KOG0328|consen 223 TDPVRILVKRDELTLE------GIKQ------------------------------------------------------ 242 (400)
T ss_pred CCceeEEEecCCCchh------hhhh------------------------------------------------------
Confidence 1112222111111111 1111
Q ss_pred EEeCCCCCcccccCCCeEEeChhH-HHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEeccCCcchhh
Q 002515 314 IEVPTNLPNIRVDLPIQSFATARG-KWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAR 392 (913)
Q Consensus 314 v~IPt~~p~~R~d~~d~v~~t~~~-k~~aii~ei~~~~~~grPVLI~t~Si~~SE~ls~~L~~~gi~~~vLnA~~k~~~~ 392 (913)
..|-...++ |+.++++.--.+ .- --.+|||++..+.+.|++.+.+.+....-+|++.++.+|
T Consensus 243 ---------------f~v~ve~EewKfdtLcdLYd~L-tI-tQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkER 305 (400)
T KOG0328|consen 243 ---------------FFVAVEKEEWKFDTLCDLYDTL-TI-TQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKER 305 (400)
T ss_pred ---------------heeeechhhhhHhHHHHHhhhh-eh-heEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHH
Confidence 112345555 667777654432 12 245799999999999999999999999999998767677
Q ss_pred HHHHHH-hcCCCccEEEEcCCCCCCccee
Q 002515 393 EAETVA-QAGRKYAITISTNMAGRGTDII 420 (913)
Q Consensus 393 Ea~Iia-~AG~~G~VTIATnmAGRGTDIk 420 (913)
|+.+-. ++| ...|.|+|+.-.||.|+.
T Consensus 306 d~im~dFRsg-~SrvLitTDVwaRGiDv~ 333 (400)
T KOG0328|consen 306 DKIMNDFRSG-KSRVLITTDVWARGIDVQ 333 (400)
T ss_pred HHHHHHhhcC-CceEEEEechhhccCCcc
Confidence 644433 788 568999999999999994
No 63
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.74 E-value=1.8e-16 Score=176.85 Aligned_cols=75 Identities=15% Similarity=0.204 Sum_probs=57.1
Q ss_pred HHHHHHhcCCcEEEEecchhhHHHHHHHHHHCCCC--eEEeccCCcchhhHH---HHHH--hcCCCccEEEEcCCCCCCc
Q 002515 345 EVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIP--HNVLNARPKYAAREA---ETVA--QAGRKYAITISTNMAGRGT 417 (913)
Q Consensus 345 ei~~~~~~grPVLI~t~Si~~SE~ls~~L~~~gi~--~~vLnA~~k~~~~Ea---~Iia--~AG~~G~VTIATnmAGRGT 417 (913)
.+......++++||||++++.++.+++.|++.+.+ ...+|++..+.+++. +++. +.| ...|.|||+.++||+
T Consensus 214 ~l~~~~~~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~-~~~ilvaT~~~~~Gi 292 (358)
T TIGR01587 214 RLLEFIKKGGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKN-EKFVIVATQVIEASL 292 (358)
T ss_pred HHHHHhhCCCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCC-CCeEEEECcchhcee
Confidence 33444567899999999999999999999998764 778898744444443 3444 334 346999999999999
Q ss_pred cee
Q 002515 418 DII 420 (913)
Q Consensus 418 DIk 420 (913)
||.
T Consensus 293 Di~ 295 (358)
T TIGR01587 293 DIS 295 (358)
T ss_pred ccC
Confidence 995
No 64
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.74 E-value=1.7e-16 Score=179.37 Aligned_cols=130 Identities=24% Similarity=0.276 Sum_probs=101.4
Q ss_pred CCchhHHHHHHHHhcCC--eEEecCCCchHHHHHHHHHHHHHcC----------CcEEEEecCHHHHHHHHHHHHHHhhh
Q 002515 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALTG----------EGVHVVTVNDYLAQRDAEWMERVHRF 69 (913)
Q Consensus 2 rp~dvQl~g~l~L~~G~--IaEm~TGEGKTLva~lpa~l~AL~G----------~~VhVvT~NdyLA~RDae~~~~~y~~ 69 (913)
.|+.||-.++++|++|+ ++..+||+||||++++|++ ..|++ --..|+.|+++||.+.++....+..-
T Consensus 159 ~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiV-q~Lq~m~~ki~Rs~G~~ALVivPTREL~~Q~y~~~qKLl~~ 237 (708)
T KOG0348|consen 159 APTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIV-QSLQAMEPKIQRSDGPYALVIVPTRELALQIYETVQKLLKP 237 (708)
T ss_pred ccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHH-HHHHhcCccccccCCceEEEEechHHHHHHHHHHHHHHhcC
Confidence 48899999999999999 9999999999999999997 56654 34589999999999999999999876
Q ss_pred cCCeE-EEEcCCCC--HHHHHhccCCCeEEECCCcchhhHHHHhhccchhhhhccCCCCceEEEeecchhhhhccC
Q 002515 70 LGLSV-GLIQRGMI--PEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEG 142 (913)
Q Consensus 70 LGLsv-~~i~~~~~--~~~r~~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea 142 (913)
+-.=| |++.||-. ++--|..-++.|..|||+++ -|++.....-.+. .+.|+|+||+|++| |-+
T Consensus 238 ~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRL-----vDHLknT~~i~~s----~LRwlVlDEaDrll-eLG 303 (708)
T KOG0348|consen 238 FHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRL-----VDHLKNTKSIKFS----RLRWLVLDEADRLL-ELG 303 (708)
T ss_pred ceEEeeceeecccccccHHHHHhcCceEEEcCchHH-----HHHHhccchheee----eeeEEEecchhHHH-hcc
Confidence 55444 33444432 33335667899999999995 5666554333333 58999999999998 543
No 65
>PRK09401 reverse gyrase; Reviewed
Probab=99.73 E-value=6e-16 Score=195.29 Aligned_cols=125 Identities=24% Similarity=0.277 Sum_probs=96.7
Q ss_pred CCchhHHHHHHHHhcCC--eEEecCCCchHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcC
Q 002515 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQR 79 (913)
Q Consensus 2 rp~dvQl~g~l~L~~G~--IaEm~TGEGKTLva~lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLsv~~i~~ 79 (913)
.|+++|..++..+++|+ ++.+.||.|||+.+.+++...+..|..+.|++|+..||.|-++.+..+....|+.+.++.+
T Consensus 80 ~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~f~l~~~~~l~~~g~~alIL~PTreLa~Qi~~~l~~l~~~~~~~~~~~~g 159 (1176)
T PRK09401 80 KPWSLQRTWAKRLLLGESFAIIAPTGVGKTTFGLVMSLYLAKKGKKSYIIFPTRLLVEQVVEKLEKFGEKVGCGVKILYY 159 (1176)
T ss_pred CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHHHhhhcCceEEEEEc
Confidence 69999999999999998 8999999999974444343345568899999999999999999999999999999887765
Q ss_pred CCC--HHHHHhc------cCCCeEEECCCcchhhHHHHhhccchhhhhccCCCCceEEEeecchhhh
Q 002515 80 GMI--PEERRSN------YRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (913)
Q Consensus 80 ~~~--~~~r~~a------Y~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiL 138 (913)
+.+ ..++... -.+||++||++.+ .+++. ..-.. .++++||||||+||
T Consensus 160 ~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL-----~~~~~----~l~~~---~~~~lVvDEaD~~L 214 (1176)
T PRK09401 160 HSSLKKKEKEEFLERLKEGDFDILVTTSQFL-----SKNFD----ELPKK---KFDFVFVDDVDAVL 214 (1176)
T ss_pred cCCcchhHHHHHHHHHhcCCCCEEEECHHHH-----HHHHH----hcccc---ccCEEEEEChHHhh
Confidence 532 2332221 2479999999764 34332 11122 69999999999998
No 66
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.72 E-value=3.8e-16 Score=198.44 Aligned_cols=109 Identities=23% Similarity=0.221 Sum_probs=83.2
Q ss_pred EecCCCchHHHHHHHHHHHHHc-------------CCcEEEEecCHHHHHHHHHHHHHHhh------------hcCCeEE
Q 002515 21 EMKTGEGKTLVSTLAAYLNALT-------------GEGVHVVTVNDYLAQRDAEWMERVHR------------FLGLSVG 75 (913)
Q Consensus 21 Em~TGEGKTLva~lpa~l~AL~-------------G~~VhVvT~NdyLA~RDae~~~~~y~------------~LGLsv~ 75 (913)
...||+|||++|.||++..-+. |..|.+|+|...||.+..+.+...+. .+|++|+
T Consensus 2 ~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V~ 81 (1490)
T PRK09751 2 IAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRVG 81 (1490)
T ss_pred cCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEEE
Confidence 3579999999999999744332 34689999999999999988764321 3689999
Q ss_pred EEcCCCCHHHHHhc--cCCCeEEECCCcchhhHHHHhhccchhhhhccCCCCceEEEeecchhhh
Q 002515 76 LIQRGMIPEERRSN--YRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (913)
Q Consensus 76 ~i~~~~~~~~r~~a--Y~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiL 138 (913)
..+|+.+..+|+.. -.+||+++|+..| +++|... ....++ ++.++||||+|.++
T Consensus 82 vrtGDt~~~eR~rll~~ppdILVTTPEsL-~~LLtsk-----~r~~L~---~Vr~VIVDE~H~L~ 137 (1490)
T PRK09751 82 IRTGDTPAQERSKLTRNPPDILITTPESL-YLMLTSR-----ARETLR---GVETVIIDEVHAVA 137 (1490)
T ss_pred EEECCCCHHHHHHHhcCCCCEEEecHHHH-HHHHhhh-----hhhhhc---cCCEEEEecHHHhc
Confidence 99999998887643 3579999999986 3333321 112455 89999999999997
No 67
>PRK13766 Hef nuclease; Provisional
Probab=99.72 E-value=1.2e-15 Score=186.87 Aligned_cols=125 Identities=18% Similarity=0.268 Sum_probs=94.9
Q ss_pred CchhHHHHHH-HHhcCCeEEecCCCchHHHHHHHHHHHHHc--CCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcC
Q 002515 3 HFDVQIIGGA-VLHDGSIAEMKTGEGKTLVSTLAAYLNALT--GEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQR 79 (913)
Q Consensus 3 p~dvQl~g~l-~L~~G~IaEm~TGEGKTLva~lpa~l~AL~--G~~VhVvT~NdyLA~RDae~~~~~y~~LGLsv~~i~~ 79 (913)
|.+-|..... ++.++-|+.+.||.|||+++.+++. +.+. |..|.|++|+..|+.+-++.+..++...+..+..+.+
T Consensus 16 ~r~yQ~~~~~~~l~~n~lv~~ptG~GKT~~a~~~i~-~~l~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g 94 (773)
T PRK13766 16 ARLYQQLLAATALKKNTLVVLPTGLGKTAIALLVIA-ERLHKKGGKVLILAPTKPLVEQHAEFFRKFLNIPEEKIVVFTG 94 (773)
T ss_pred ccHHHHHHHHHHhcCCeEEEcCCCccHHHHHHHHHH-HHHHhCCCeEEEEeCcHHHHHHHHHHHHHHhCCCCceEEEEeC
Confidence 3444554443 4455569999999999999988876 3444 6789999999999999888888776655568888989
Q ss_pred CCCHHHHHhcc-CCCeEEECCCcchhhHHHHhhccchhhhhccCCCCceEEEeecchhhh
Q 002515 80 GMIPEERRSNY-RCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (913)
Q Consensus 80 ~~~~~~r~~aY-~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiL 138 (913)
+.++.+|...| .++|+++|+.-+..|.+...+ ... .++++||||||.+.
T Consensus 95 ~~~~~~r~~~~~~~~iiv~T~~~l~~~l~~~~~-------~~~---~~~liVvDEaH~~~ 144 (773)
T PRK13766 95 EVSPEKRAELWEKAKVIVATPQVIENDLIAGRI-------SLE---DVSLLIFDEAHRAV 144 (773)
T ss_pred CCCHHHHHHHHhCCCEEEECHHHHHHHHHcCCC-------Chh---hCcEEEEECCcccc
Confidence 88888888888 579999999776555443222 123 78999999999764
No 68
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.72 E-value=1.4e-15 Score=182.72 Aligned_cols=119 Identities=15% Similarity=0.076 Sum_probs=84.3
Q ss_pred hhHHHHHHHHhcCC--eEEecCCCchHHH---------HHHHHH--HHHH----cCCcEEEEecCHHHHHHHHHHHHHHh
Q 002515 5 DVQIIGGAVLHDGS--IAEMKTGEGKTLV---------STLAAY--LNAL----TGEGVHVVTVNDYLAQRDAEWMERVH 67 (913)
Q Consensus 5 dvQl~g~l~L~~G~--IaEm~TGEGKTLv---------a~lpa~--l~AL----~G~~VhVvT~NdyLA~RDae~~~~~y 67 (913)
++|.-....+.+|+ |++..||+|||.+ |++|.+ ++++ .+..|.|++|...||.+-++.++...
T Consensus 167 ~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~qi~~~i~~~v 246 (675)
T PHA02653 167 DVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRLHSITLLKSL 246 (675)
T ss_pred HHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHHHHHHHHHHh
Confidence 57777777777777 9999999999976 233332 1222 24579999999999999888887765
Q ss_pred hh---cCCeEEEEcCCCCHHHHH-hccCCCeEEECCCcchhhHHHHhhccchhhhhccCCCCceEEEeecchhhhhc
Q 002515 68 RF---LGLSVGLIQRGMIPEERR-SNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLID 140 (913)
Q Consensus 68 ~~---LGLsv~~i~~~~~~~~r~-~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiD 140 (913)
.+ -|+++.+..++++..... ..-..||+.+|+.-. + ..+. ++.++||||||.++.+
T Consensus 247 g~~~~~g~~v~v~~Gg~~~~~~~t~~k~~~Ilv~T~~L~------l--------~~L~---~v~~VVIDEaHEr~~~ 306 (675)
T PHA02653 247 GFDEIDGSPISLKYGSIPDELINTNPKPYGLVFSTHKLT------L--------NKLF---DYGTVIIDEVHEHDQI 306 (675)
T ss_pred CccccCCceEEEEECCcchHHhhcccCCCCEEEEeCccc------c--------cccc---cCCEEEccccccCccc
Confidence 44 477888888888743221 112569999996420 0 1234 7999999999998644
No 69
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.71 E-value=1.2e-15 Score=186.75 Aligned_cols=119 Identities=18% Similarity=0.202 Sum_probs=85.7
Q ss_pred HHHHHHHHhcCCeEEecCCCchHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHH-HhhhcCCeEEEEcCCCCHHH
Q 002515 7 QIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMER-VHRFLGLSVGLIQRGMIPEE 85 (913)
Q Consensus 7 Ql~g~l~L~~G~IaEm~TGEGKTLva~lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~-~y~~LGLsv~~i~~~~~~~~ 85 (913)
|++-.+.=++--|++..||+|||..+.+|++-....+..|.|+.|++.+|.+-++.+.. +...+|.+||......+
T Consensus 9 ~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy~vr~~~--- 85 (819)
T TIGR01970 9 ALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPGIGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVGYRVRGEN--- 85 (819)
T ss_pred HHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhccCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEEEEcccc---
Confidence 55555544444599999999999999999874434556899999999999999999864 44577888887655422
Q ss_pred HHhccCCCeEEECCCcchhhHHHHhhccchhhhhccCCCCceEEEeecchhhhhc
Q 002515 86 RRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLID 140 (913)
Q Consensus 86 r~~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiD 140 (913)
+..-..+|+|+|++.| .+.+... ..+. ++.++||||||...+|
T Consensus 86 -~~s~~t~I~v~T~G~L-----lr~l~~d---~~L~---~v~~VIiDEaHER~L~ 128 (819)
T TIGR01970 86 -KVSRRTRLEVVTEGIL-----TRMIQDD---PELD---GVGALIFDEFHERSLD 128 (819)
T ss_pred -ccCCCCcEEEECCcHH-----HHHHhhC---cccc---cCCEEEEeccchhhhc
Confidence 1223468999999875 2333322 2345 8999999999964333
No 70
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.71 E-value=2.8e-15 Score=189.44 Aligned_cols=123 Identities=24% Similarity=0.249 Sum_probs=98.1
Q ss_pred CCchhHHHHHHHHhcCC--eEEecCCCchHHHHHHHHHH-HHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEE---
Q 002515 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYL-NALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVG--- 75 (913)
Q Consensus 2 rp~dvQl~g~l~L~~G~--IaEm~TGEGKTLva~lpa~l-~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLsv~--- 75 (913)
.|+++|..++..++.|+ ++.+.||+|||+ +++|+.. .+..|..|.|++|+..||.|.++.+..+...+|+.+.
T Consensus 78 ~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~~~g~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~~~~i~ 156 (1171)
T TIGR01054 78 EPWSIQKMWAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLAKKGKRCYIILPTTLLVIQVAEKISSLAEKAGVGTVNIG 156 (1171)
T ss_pred CCcHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHHhcCCeEEEEeCHHHHHHHHHHHHHHHHHhcCCceeeee
Confidence 69999999999999999 999999999997 5555543 3456889999999999999999999999999998754
Q ss_pred EEcCCCCHHHHHhc------cCCCeEEECCCcchhhHHHHhhccchhhhhccCCCCceEEEeecchhhh
Q 002515 76 LIQRGMIPEERRSN------YRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (913)
Q Consensus 76 ~i~~~~~~~~r~~a------Y~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiL 138 (913)
++.++++..++... =.+||++||++.+ .+++.. ... .++++||||||+||
T Consensus 157 ~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL-----~~~~~~-----l~~---~~~~iVvDEaD~~L 212 (1171)
T TIGR01054 157 AYHSRLPTKEKKEFMERIENGDFDILITTTMFL-----SKNYDE-----LGP---KFDFIFVDDVDALL 212 (1171)
T ss_pred eecCCCCHHHHHHHHHHHhcCCCCEEEECHHHH-----HHHHHH-----hcC---CCCEEEEeChHhhh
Confidence 46788887665332 1379999999754 444321 112 68999999999998
No 71
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.71 E-value=9.3e-16 Score=187.94 Aligned_cols=116 Identities=13% Similarity=0.100 Sum_probs=83.2
Q ss_pred HHHHHHHHhcCCeEEecCCCchHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHh-hhcCCeEEEEcCCCCHHH
Q 002515 7 QIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVH-RFLGLSVGLIQRGMIPEE 85 (913)
Q Consensus 7 Ql~g~l~L~~G~IaEm~TGEGKTLva~lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y-~~LGLsv~~i~~~~~~~~ 85 (913)
+++..+.=++--|++..||+|||.++.+|++-....+.+|.|+.|++.+|.+-++.+...+ ..+|.+||...++.+.
T Consensus 12 ~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~~~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VGy~vr~~~~-- 89 (812)
T PRK11664 12 ELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGGINGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVGYRMRAESK-- 89 (812)
T ss_pred HHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCCcCCeEEEECChHHHHHHHHHHHHHHhCcccCceEEEEecCccc--
Confidence 4555554344449999999999999998886443334479999999999999999986544 5688899887654321
Q ss_pred HHhccCCCeEEECCCcchhhHHHHhhccchhhhhccCCCCceEEEeecchhh
Q 002515 86 RRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV 137 (913)
Q Consensus 86 r~~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsi 137 (913)
..-..+|+|+|++.| .+ .+... ..+. ++.++||||+|..
T Consensus 90 --~~~~t~I~v~T~G~L-lr----~l~~d---~~L~---~v~~IIlDEaHER 128 (812)
T PRK11664 90 --VGPNTRLEVVTEGIL-TR----MIQRD---PELS---GVGLVILDEFHER 128 (812)
T ss_pred --cCCCCcEEEEChhHH-HH----HHhhC---CCcC---cCcEEEEcCCCcc
Confidence 122357999999985 22 33222 2345 8999999999973
No 72
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=99.70 E-value=1.8e-15 Score=168.08 Aligned_cols=267 Identities=22% Similarity=0.255 Sum_probs=181.0
Q ss_pred CCchhHHHHHHHHhcCC--eEEecCCCchHHHHHHHHHHHHHc---------CCcEEEEecCHHHHHHHHHHHHHHhhhc
Q 002515 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALT---------GEGVHVVTVNDYLAQRDAEWMERVHRFL 70 (913)
Q Consensus 2 rp~dvQl~g~l~L~~G~--IaEm~TGEGKTLva~lpa~l~AL~---------G~~VhVvT~NdyLA~RDae~~~~~y~~L 70 (913)
+|.-||--+++..++|+ +|.++||+|||+++++|+.-.-|. |-...|+.|+.+||++-+..+..+-.++
T Consensus 41 kpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~iLvPTkEL~qQvy~viekL~~~c 120 (569)
T KOG0346|consen 41 KPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVILVPTKELAQQVYKVIEKLVEYC 120 (569)
T ss_pred CcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEEEechHHHHHHHHHHHHHHHHHH
Confidence 68889999999999999 999999999999999999733232 2345799999999999999999999998
Q ss_pred C--CeEEEEcCCCCHHHHHhcc--CCCeEEECCCcchhhHHHHhhccchhhhhccCCCCceEEEeecchhhhhccCCCce
Q 002515 71 G--LSVGLIQRGMIPEERRSNY--RCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPL 146 (913)
Q Consensus 71 G--Lsv~~i~~~~~~~~r~~aY--~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~tPL 146 (913)
+ |.+.-+.++|+...-+.+. ..||+++||+.+ -++++.... .... .+.|++|||||=+|.=+
T Consensus 121 ~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~l-----l~~~~~~~~-~~~~---~l~~LVvDEADLllsfG----- 186 (569)
T KOG0346|consen 121 SKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKL-----LRHLAAGVL-EYLD---SLSFLVVDEADLLLSFG----- 186 (569)
T ss_pred HHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHH-----HHHHhhccc-hhhh---heeeEEechhhhhhhcc-----
Confidence 8 5555566677765555433 479999999985 334443321 2334 78999999999988322
Q ss_pred eccCCCCCCccch-HHHHHHHHHhccCCCeEEeCCCCeeeccHhhHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHhhc
Q 002515 147 LISGEASKDVARY-PVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYR 225 (913)
Q Consensus 147 iiSg~~~~~~~~y-~~~~~~v~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~l~~~i~~Al~A~~l~~ 225 (913)
| ..+..+...|++
T Consensus 187 ------------Yeedlk~l~~~LPr------------------------------------------------------ 200 (569)
T KOG0346|consen 187 ------------YEEDLKKLRSHLPR------------------------------------------------------ 200 (569)
T ss_pred ------------cHHHHHHHHHhCCc------------------------------------------------------
Confidence 1 122222222221
Q ss_pred cCcceEEECCeEEEEeCCCCccccCcccChhhhHHHHhHhCCcccCCceeeeeeeehhHHhhcCcccccCCCcccHHHHH
Q 002515 226 RDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEF 305 (913)
Q Consensus 226 ~d~dYiV~dg~V~iVD~~TGR~~~gr~ws~GLHQaieaKEgv~i~~e~~t~a~IT~q~~F~~Y~kL~GmTGTa~te~~Ef 305 (913)
.||.| -||+|+...-.-+
T Consensus 201 ------------------------------------------------------~~Q~~--------LmSATl~dDv~~L 218 (569)
T KOG0346|consen 201 ------------------------------------------------------IYQCF--------LMSATLSDDVQAL 218 (569)
T ss_pred ------------------------------------------------------hhhhe--------eehhhhhhHHHHH
Confidence 12222 3555555544445
Q ss_pred HHHh-CCCeEEe--CCCCCcccccCCCeEEeChhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHCCCCeEE
Q 002515 306 LKMF-QMPVIEV--PTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNV 382 (913)
Q Consensus 306 ~~iY-~l~vv~I--Pt~~p~~R~d~~d~v~~t~~~k~~aii~ei~~~~~~grPVLI~t~Si~~SE~ls~~L~~~gi~~~v 382 (913)
.+.+ .-+|+.- ....|..-+-...+|-.++.+|+.-+....+-..=.| .+|||.++|+.+=.|--.|.+-||+.-+
T Consensus 219 KkL~l~nPviLkl~e~el~~~dqL~Qy~v~cse~DKflllyallKL~LI~g-KsliFVNtIdr~YrLkLfLeqFGiksci 297 (569)
T KOG0346|consen 219 KKLFLHNPVILKLTEGELPNPDQLTQYQVKCSEEDKFLLLYALLKLRLIRG-KSLIFVNTIDRCYRLKLFLEQFGIKSCI 297 (569)
T ss_pred HHHhccCCeEEEeccccCCCcccceEEEEEeccchhHHHHHHHHHHHHhcC-ceEEEEechhhhHHHHHHHHHhCcHhhh
Confidence 4432 2233311 1122222223344667788889876665555333344 6799999999999999999999999999
Q ss_pred eccCCcchhhHHHHHH--hcCCCccEEEEcCCC
Q 002515 383 LNARPKYAAREAETVA--QAGRKYAITISTNMA 413 (913)
Q Consensus 383 LnA~~k~~~~Ea~Iia--~AG~~G~VTIATnmA 413 (913)
||+-.....| -+||. .+| .-.+.|||+--
T Consensus 298 LNseLP~NSR-~Hii~QFNkG-~YdivIAtD~s 328 (569)
T KOG0346|consen 298 LNSELPANSR-CHIIEQFNKG-LYDIVIATDDS 328 (569)
T ss_pred hcccccccch-hhHHHHhhCc-ceeEEEEccCc
Confidence 9986223344 47887 466 56899999865
No 73
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.68 E-value=8.5e-15 Score=164.75 Aligned_cols=123 Identities=15% Similarity=0.147 Sum_probs=81.5
Q ss_pred HHHHHHHHhcCC----eEEecCCCchHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhc----CCeEEEEc
Q 002515 7 QIIGGAVLHDGS----IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFL----GLSVGLIQ 78 (913)
Q Consensus 7 Ql~g~l~L~~G~----IaEm~TGEGKTLva~lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~L----GLsv~~i~ 78 (913)
|.-+.-++.+|. ++.+.||+|||+++.+|+.. .+..+.+++|...|+.+.++.+..++..+ ++.+....
T Consensus 2 Q~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~---~~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~~~v~~~~ 78 (357)
T TIGR03158 2 QVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLH---GENDTIALYPTNALIEDQTEAIKEFVDVFKPERDVNLLHVS 78 (357)
T ss_pred HHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHH---cCCCEEEEeChHHHHHHHHHHHHHHHHhcCCCCCceEEEec
Confidence 555566666665 67899999999999999862 34568899999999999999999988755 66777776
Q ss_pred CCCCHHHH--------------------Hhc--cCCCeEEECCCcchhhHHHHhhccchh---hhhccCCCCceEEEeec
Q 002515 79 RGMIPEER--------------------RSN--YRCDITYTNNSELGFDYLRDNLAANSE---QLVMRWPKPFHFAIVDE 133 (913)
Q Consensus 79 ~~~~~~~r--------------------~~a--Y~~DI~YgT~~e~~fDyLrD~l~~~~~---~~v~r~~R~~~~aIVDE 133 (913)
+....+.+ ... -..+|+ .||.++ |++|.-+....+. ...+. .+.++|+||
T Consensus 79 g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~il-lT~p~~-l~~llr~~~~~~~~~~~~~~~---~~~~iV~DE 153 (357)
T TIGR03158 79 KATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIIL-LTNPDI-FVYLTRFAYIDRGDIAAGFYT---KFSTVIFDE 153 (357)
T ss_pred CCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEE-EecHHH-HHHHHhhhccCcccchhhhhc---CCCEEEEec
Confidence 65322211 111 134555 666554 5655332211111 12334 899999999
Q ss_pred chhh
Q 002515 134 VDSV 137 (913)
Q Consensus 134 vDsi 137 (913)
+|..
T Consensus 154 ~H~~ 157 (357)
T TIGR03158 154 FHLY 157 (357)
T ss_pred cccc
Confidence 9984
No 74
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.68 E-value=5.7e-16 Score=166.47 Aligned_cols=272 Identities=18% Similarity=0.272 Sum_probs=192.7
Q ss_pred CCchhHHHHHHHHhcCC--eEEecCCCchHHHHHHHHHHHHHcCC----cEEEEecCHHHHHHHHHHHHHHhhhcCCeEE
Q 002515 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALTGE----GVHVVTVNDYLAQRDAEWMERVHRFLGLSVG 75 (913)
Q Consensus 2 rp~dvQl~g~l~L~~G~--IaEm~TGEGKTLva~lpa~l~AL~G~----~VhVvT~NdyLA~RDae~~~~~y~~LGLsv~ 75 (913)
+|-|+|.-++++.+.|+ +|..+.|.|||-++.+|.. .-+.-+ ...|+.|+++||-+-+.-...+-+.+|+.|.
T Consensus 107 kPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~L-ekid~~~~~IQ~~ilVPtrelALQtSqvc~~lskh~~i~vm 185 (459)
T KOG0326|consen 107 KPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVL-EKIDPKKNVIQAIILVPTRELALQTSQVCKELSKHLGIKVM 185 (459)
T ss_pred CCCCccccccceeecchhhhhhccCCCCCccceechhh-hhcCccccceeEEEEeecchhhHHHHHHHHHHhcccCeEEE
Confidence 79999999999999999 9999999999999999996 554432 5689999999999999999999999999999
Q ss_pred EEcCCCCHHH--HHhccCCCeEEECCCcchhhHHHHhhccchhhhhccCCCCceEEEeecchhhhhccCCCceeccCCCC
Q 002515 76 LIQRGMIPEE--RRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEAS 153 (913)
Q Consensus 76 ~i~~~~~~~~--r~~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~tPLiiSg~~~ 153 (913)
+.+++.+-.+ -|..-..+++.|||++. . |.+... --.+. .+..+++||||.+|.-+
T Consensus 186 vttGGT~lrDDI~Rl~~~VH~~vgTPGRI-l----DL~~Kg--Va~ls---~c~~lV~DEADKlLs~~------------ 243 (459)
T KOG0326|consen 186 VTTGGTSLRDDIMRLNQTVHLVVGTPGRI-L----DLAKKG--VADLS---DCVILVMDEADKLLSVD------------ 243 (459)
T ss_pred EecCCcccccceeeecCceEEEEcCChhH-H----HHHhcc--cccch---hceEEEechhhhhhchh------------
Confidence 9999876432 23334469999999995 3 433221 12344 78899999999998433
Q ss_pred CCccchHHHHHHHHHhccCCCeEEeCCCCeeeccHhhHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHhhccCcceEEE
Q 002515 154 KDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVR 233 (913)
Q Consensus 154 ~~~~~y~~~~~~v~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~l~~~i~~Al~A~~l~~~d~dYiV~ 233 (913)
+-+.+.+++..|++ +++++ |||++.++. |.+ +.-+++ ..-|.|
T Consensus 244 ----F~~~~e~li~~lP~---------~rQil-----------------lySATFP~t--Vk~-Fm~~~l---~kPy~I- 286 (459)
T KOG0326|consen 244 ----FQPIVEKLISFLPK---------ERQIL-----------------LYSATFPLT--VKG-FMDRHL---KKPYEI- 286 (459)
T ss_pred ----hhhHHHHHHHhCCc---------cceee-----------------EEecccchh--HHH-HHHHhc---cCccee-
Confidence 33567777877754 78887 888877541 111 111122 122333
Q ss_pred CCeEEEEeCCCCccccCcccChhhhHHHHhHhCCcccCCceeeeeeeehhHHhhcCcccccCCCcccHHHHHHHHhCCCe
Q 002515 234 NGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPV 313 (913)
Q Consensus 234 dg~V~iVD~~TGR~~~gr~ws~GLHQaieaKEgv~i~~e~~t~a~IT~q~~F~~Y~kL~GmTGTa~te~~Ef~~iY~l~v 313 (913)
-++++-| +-|+|-
T Consensus 287 ----NLM~eLt----------------------------------------------l~GvtQ----------------- 299 (459)
T KOG0326|consen 287 ----NLMEELT----------------------------------------------LKGVTQ----------------- 299 (459)
T ss_pred ----ehhhhhh----------------------------------------------hcchhh-----------------
Confidence 1222210 011110
Q ss_pred EEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEeccCCcchhhH
Q 002515 314 IEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAARE 393 (913)
Q Consensus 314 v~IPt~~p~~R~d~~d~v~~t~~~k~~aii~ei~~~~~~grPVLI~t~Si~~SE~ls~~L~~~gi~~~vLnA~~k~~~~E 393 (913)
..-|.++.+|..-+-....+. .-+| .+|||+|++.+|.+++...+.|.+|-.+||+.. +..
T Consensus 300 ---------------yYafV~e~qKvhCLntLfskL-qINQ-sIIFCNS~~rVELLAkKITelGyscyyiHakM~--Q~h 360 (459)
T KOG0326|consen 300 ---------------YYAFVEERQKVHCLNTLFSKL-QINQ-SIIFCNSTNRVELLAKKITELGYSCYYIHAKMA--QEH 360 (459)
T ss_pred ---------------heeeechhhhhhhHHHHHHHh-cccc-eEEEeccchHhHHHHHHHHhccchhhHHHHHHH--Hhh
Confidence 122778888887655444433 3333 479999999999999999999999999999643 333
Q ss_pred HHHHH---hcCCCccEEEEcCCCCCCccee
Q 002515 394 AETVA---QAGRKYAITISTNMAGRGTDII 420 (913)
Q Consensus 394 a~Iia---~AG~~G~VTIATnmAGRGTDIk 420 (913)
...+- +-|.. ...|||++.-||+||.
T Consensus 361 RNrVFHdFr~G~c-rnLVctDL~TRGIDiq 389 (459)
T KOG0326|consen 361 RNRVFHDFRNGKC-RNLVCTDLFTRGIDIQ 389 (459)
T ss_pred hhhhhhhhhcccc-ceeeehhhhhcccccc
Confidence 44554 45533 6789999999999995
No 75
>KOG4284 consensus DEAD box protein [Transcription]
Probab=99.68 E-value=3.1e-16 Score=179.70 Aligned_cols=282 Identities=20% Similarity=0.196 Sum_probs=189.3
Q ss_pred CCchhHHHHHHHHhcCC--eEEecCCCchHHHHHHHHHHHHHcCC----cEEEEecCHHHHHHHHHHHHHHhh-hcCCeE
Q 002515 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALTGE----GVHVVTVNDYLAQRDAEWMERVHR-FLGLSV 74 (913)
Q Consensus 2 rp~dvQl~g~l~L~~G~--IaEm~TGEGKTLva~lpa~l~AL~G~----~VhVvT~NdyLA~RDae~~~~~y~-~LGLsv 74 (913)
+|.+||+.++++.+-|. |+|.+.|.||||+|...|. ..|.-+ ...||||++++|-+..+.+..+.. |-|+.|
T Consensus 47 ~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av-~sl~~~~~~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~c 125 (980)
T KOG4284|consen 47 LPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAV-ESLDSRSSHIQKVIVTPTREIAVQIKETVRKVAPSFTGARC 125 (980)
T ss_pred CCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeee-hhcCcccCcceeEEEecchhhhhHHHHHHHHhcccccCcce
Confidence 69999999999988866 9999999999999988885 565543 567999999999999999999985 779999
Q ss_pred EEEcCCCC-HHHHHhccCCCeEEECCCcchhhHHHHhhccchhhhhccCCCCceEEEeecchhhhhccCCCceeccCCCC
Q 002515 75 GLIQRGMI-PEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEAS 153 (913)
Q Consensus 75 ~~i~~~~~-~~~r~~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~tPLiiSg~~~ 153 (913)
.+..||.+ ..++...-.|.|+.|||+++. .|-.+=+ .... .+++.|+||||-++ |+.
T Consensus 126 svfIGGT~~~~d~~rlk~~rIvIGtPGRi~--qL~el~~-----~n~s---~vrlfVLDEADkL~-~t~----------- 183 (980)
T KOG4284|consen 126 SVFIGGTAHKLDLIRLKQTRIVIGTPGRIA--QLVELGA-----MNMS---HVRLFVLDEADKLM-DTE----------- 183 (980)
T ss_pred EEEecCchhhhhhhhhhhceEEecCchHHH--HHHHhcC-----CCcc---ceeEEEeccHHhhh-chh-----------
Confidence 99999877 456667778999999999963 2222111 1223 88999999999977 431
Q ss_pred CCccchHHHHHHHHHhccCCCeEEeCCCCeeeccHhhHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHhhccCcceEEE
Q 002515 154 KDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVR 233 (913)
Q Consensus 154 ~~~~~y~~~~~~v~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~l~~~i~~Al~A~~l~~~d~dYiV~ 233 (913)
.+-..++.++..|.. .|++. -|+++. .+.+.++| ++++ +|- -+|+
T Consensus 184 ---sfq~~In~ii~slP~---------~rQv~-----------------a~SATY--p~nLdn~L-sk~m--rdp-~lVr 228 (980)
T KOG4284|consen 184 ---SFQDDINIIINSLPQ---------IRQVA-----------------AFSATY--PRNLDNLL-SKFM--RDP-ALVR 228 (980)
T ss_pred ---hHHHHHHHHHHhcch---------hheee-----------------EEeccC--chhHHHHH-HHHh--ccc-ceee
Confidence 234567778888854 66765 355443 45677776 3332 121 1222
Q ss_pred CC--eEEEEeCCCCccccCcccChhhhHHHHhHhCCcccCCceeeeeeeehhHHhhcCcccccCCCcccHHHHHHHHhCC
Q 002515 234 NG--KALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQM 311 (913)
Q Consensus 234 dg--~V~iVD~~TGR~~~gr~ws~GLHQaieaKEgv~i~~e~~t~a~IT~q~~F~~Y~kL~GmTGTa~te~~Ef~~iY~l 311 (913)
.+ .++++ |+.|++-
T Consensus 229 ~n~~d~~L~---------------GikQyv~------------------------------------------------- 244 (980)
T KOG4284|consen 229 FNADDVQLF---------------GIKQYVV------------------------------------------------- 244 (980)
T ss_pred cccCCceee---------------chhheee-------------------------------------------------
Confidence 11 01110 3333332
Q ss_pred CeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEeccCCcchh
Q 002515 312 PVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAA 391 (913)
Q Consensus 312 ~vv~IPt~~p~~R~d~~d~v~~t~~~k~~aii~ei~~~~~~grPVLI~t~Si~~SE~ls~~L~~~gi~~~vLnA~~k~~~ 391 (913)
.+|+.- ....+|.-+-+++..|...|--. -.||||.++-.++.++..|+..|+++..+.+...+.+
T Consensus 245 ---~~~s~n------nsveemrlklq~L~~vf~~ipy~-----QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~ 310 (980)
T KOG4284|consen 245 ---AKCSPN------NSVEEMRLKLQKLTHVFKSIPYV-----QALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKD 310 (980)
T ss_pred ---eccCCc------chHHHHHHHHHHHHHHHhhCchH-----HHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhH
Confidence 222200 00111223334444444444322 2399999999999999999999999999988654444
Q ss_pred hHHHHHH-hcCCCccEEEEcCCCCCCccee
Q 002515 392 REAETVA-QAGRKYAITISTNMAGRGTDII 420 (913)
Q Consensus 392 ~Ea~Iia-~AG~~G~VTIATnmAGRGTDIk 420 (913)
|--.+-. ++. .-.|.|||++..||+|-.
T Consensus 311 Rl~a~~~lr~f-~~rILVsTDLtaRGIDa~ 339 (980)
T KOG4284|consen 311 RLLAVDQLRAF-RVRILVSTDLTARGIDAD 339 (980)
T ss_pred HHHHHHHhhhc-eEEEEEecchhhccCCcc
Confidence 4322222 333 348999999999999963
No 76
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.67 E-value=1.7e-15 Score=173.72 Aligned_cols=277 Identities=20% Similarity=0.205 Sum_probs=186.7
Q ss_pred CCchhHHHHHHHHhcCC--eEEecCCCchHHHHHHHHHHHHHcC---------CcEEEEecCHHHHHHHHHHHHHHh--h
Q 002515 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALTG---------EGVHVVTVNDYLAQRDAEWMERVH--R 68 (913)
Q Consensus 2 rp~dvQl~g~l~L~~G~--IaEm~TGEGKTLva~lpa~l~AL~G---------~~VhVvT~NdyLA~RDae~~~~~y--~ 68 (913)
-|.|+|..+.+++.+++ +|+..||+||||++.+|.+. -|.+ -.+.|+.|.+.||.|++-+|.++- .
T Consensus 158 ~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~-~L~~~~~~~~~~gl~a~Il~ptreLa~Qi~re~~k~~~~~ 236 (593)
T KOG0344|consen 158 EPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQ-HLKDLSQEKHKVGLRALILSPTRELAAQIYREMRKYSIDE 236 (593)
T ss_pred CCCcccchhhhhhhcccceEEeccCCCcchhhhhhHHHH-HHHHhhcccCccceEEEEecchHHHHHHHHHHHHhcCCCC
Confidence 38899999999999988 99999999999999999864 4433 357899999999999999999987 5
Q ss_pred hcCCeEEEEcCCCCHHHHHhcc----CCCeEEECCCcchhhHHHHhhccchhhhhccCCCCceEEEeecchhhhhccCCC
Q 002515 69 FLGLSVGLIQRGMIPEERRSNY----RCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRN 144 (913)
Q Consensus 69 ~LGLsv~~i~~~~~~~~r~~aY----~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~t 144 (913)
-.++.+........+.++ .+. .+||..+||.++ ...+...+-..-++ +..++++||+|.++-.
T Consensus 237 ~t~~~a~~~~~~~~~~qk-~a~~~~~k~dili~TP~ri-----~~~~~~~~~~idl~---~V~~lV~dEaD~lfe~---- 303 (593)
T KOG0344|consen 237 GTSLRAAQFSKPAYPSQK-PAFLSDEKYDILISTPMRI-----VGLLGLGKLNIDLS---KVEWLVVDEADLLFEP---- 303 (593)
T ss_pred CCchhhhhcccccchhhc-cchhHHHHHHHHhcCHHHH-----HHHhcCCCccchhh---eeeeEeechHHhhhCh----
Confidence 455555443333223322 222 368999999884 33344443334556 9999999999987622
Q ss_pred ceeccCCCCCCccchHHHHHHHHHhccCCCeEEeCCCCeeeccHhhHHHHHHHhccCCCCCCCC--cHHHHHHHHHHHHH
Q 002515 145 PLLISGEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDEND--PWARFVMNALKAKE 222 (913)
Q Consensus 145 PLiiSg~~~~~~~~y~~~~~~v~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~--~l~~~i~~Al~A~~ 222 (913)
..++.+.+.+...+... .+. ..+|+++. ....|...-.
T Consensus 304 -----------~~f~~Qla~I~sac~s~----------~i~---------------~a~FSat~~~~VEE~~~~i~---- 343 (593)
T KOG0344|consen 304 -----------EFFVEQLADIYSACQSP----------DIR---------------VALFSATISVYVEEWAELIK---- 343 (593)
T ss_pred -----------hhHHHHHHHHHHHhcCc----------chh---------------hhhhhccccHHHHHHHHHhh----
Confidence 22556666666555321 110 11455433 1222222211
Q ss_pred hhccCcceEEECCeEEEEeCCCCccccCcccChhhhHHHHhHhCCcccCCceeeeeeeehhHHhhcCcccccCCCcccHH
Q 002515 223 FYRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEE 302 (913)
Q Consensus 223 l~~~d~dYiV~dg~V~iVD~~TGR~~~gr~ws~GLHQaieaKEgv~i~~e~~t~a~IT~q~~F~~Y~kL~GmTGTa~te~ 302 (913)
+.. ..+|| |.+-+|
T Consensus 344 ------~~~----~~viv----------------------------------------------------g~~~sa---- 357 (593)
T KOG0344|consen 344 ------SDL----KRVIV----------------------------------------------------GLRNSA---- 357 (593)
T ss_pred ------ccc----eeEEE----------------------------------------------------ecchhH----
Confidence 000 00111 111111
Q ss_pred HHHHHHhCCCeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHH-HHCCCCeE
Q 002515 303 KEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLL-KQQGIPHN 381 (913)
Q Consensus 303 ~Ef~~iY~l~vv~IPt~~p~~R~d~~d~v~~t~~~k~~aii~ei~~~~~~grPVLI~t~Si~~SE~ls~~L-~~~gi~~~ 381 (913)
.-+.++..+.-.++..|+-|+.+.|..- -.=|+|||..|++.+..|...| .-.+|...
T Consensus 358 -------------------~~~V~QelvF~gse~~K~lA~rq~v~~g--~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~ 416 (593)
T KOG0344|consen 358 -------------------NETVDQELVFCGSEKGKLLALRQLVASG--FKPPVLIFVQSKERAKQLFEELEIYDNINVD 416 (593)
T ss_pred -------------------hhhhhhhheeeecchhHHHHHHHHHhcc--CCCCeEEEEecHHHHHHHHHHhhhccCccee
Confidence 1233444444457788999988877764 4469999999999999999999 77899999
Q ss_pred EeccCCcchhhHHHHHH-hcCCCccEEEEcCCCCCCccee
Q 002515 382 VLNARPKYAAREAETVA-QAGRKYAITISTNMAGRGTDII 420 (913)
Q Consensus 382 vLnA~~k~~~~Ea~Iia-~AG~~G~VTIATnmAGRGTDIk 420 (913)
++|+...+.++|..+-+ ++| .-.|.|+|++.+||.||+
T Consensus 417 vIh~e~~~~qrde~~~~FR~g-~IwvLicTdll~RGiDf~ 455 (593)
T KOG0344|consen 417 VIHGERSQKQRDETMERFRIG-KIWVLICTDLLARGIDFK 455 (593)
T ss_pred eEecccchhHHHHHHHHHhcc-CeeEEEehhhhhcccccc
Confidence 99997556666655555 667 569999999999999997
No 77
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.67 E-value=7.5e-15 Score=165.34 Aligned_cols=129 Identities=26% Similarity=0.320 Sum_probs=99.6
Q ss_pred CCchhHHHHHHHHh----------cCC-eEEecCCCchHHHHHHHHHHHHHcCC-----cEEEEecCHHHHHHHHHHHHH
Q 002515 2 RHFDVQIIGGAVLH----------DGS-IAEMKTGEGKTLVSTLAAYLNALTGE-----GVHVVTVNDYLAQRDAEWMER 65 (913)
Q Consensus 2 rp~dvQl~g~l~L~----------~G~-IaEm~TGEGKTLva~lpa~l~AL~G~-----~VhVvT~NdyLA~RDae~~~~ 65 (913)
|-||||-+-.+.++ -|. .+-..||+||||++++|+. .+|..+ ++.||.|+..||-|-+..+..
T Consensus 159 ~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIV-Q~L~~R~v~~LRavVivPtr~L~~QV~~~f~~ 237 (620)
T KOG0350|consen 159 RLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIV-QLLSSRPVKRLRAVVIVPTRELALQVYDTFKR 237 (620)
T ss_pred cccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHH-HHHccCCccceEEEEEeeHHHHHHHHHHHHHH
Confidence 56999966665542 223 5788999999999999997 788877 457999999999999999999
Q ss_pred HhhhcCCeEEEEcCC--CCHHHHHhcc-----CCCeEEECCCcchhhHHHHhhccchhhhhccCCCCceEEEeecchhhh
Q 002515 66 VHRFLGLSVGLIQRG--MIPEERRSNY-----RCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (913)
Q Consensus 66 ~y~~LGLsv~~i~~~--~~~~~r~~aY-----~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiL 138 (913)
+-.--||.|+...+. ...+.++.+- ..||+++||++| -|++... ....+. .+.|+||||||++|
T Consensus 238 ~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRL-----VDHl~~~-k~f~Lk---~LrfLVIDEADRll 308 (620)
T KOG0350|consen 238 LNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRL-----VDHLNNT-KSFDLK---HLRFLVIDEADRLL 308 (620)
T ss_pred hccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHH-----HHhccCC-CCcchh---hceEEEechHHHHH
Confidence 999999999877654 3355555432 249999999996 4555432 234455 89999999999998
Q ss_pred hcc
Q 002515 139 IDE 141 (913)
Q Consensus 139 iDe 141 (913)
|.
T Consensus 309 -~q 310 (620)
T KOG0350|consen 309 -DQ 310 (620)
T ss_pred -HH
Confidence 54
No 78
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.65 E-value=1.5e-14 Score=174.73 Aligned_cols=279 Identities=20% Similarity=0.253 Sum_probs=186.2
Q ss_pred CCchhHHHHHHHHhcCC--eEEecCCCchHHHHHHHHHHHHHcCC-------cEEEE--ecCHHHHHHHHHHHHHHhhhc
Q 002515 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALTGE-------GVHVV--TVNDYLAQRDAEWMERVHRFL 70 (913)
Q Consensus 2 rp~dvQl~g~l~L~~G~--IaEm~TGEGKTLva~lpa~l~AL~G~-------~VhVv--T~NdyLA~RDae~~~~~y~~L 70 (913)
.|.|+|..+.+..++|+ ++-..||+|||++|.||++ +.|... +|+++ ||=..|+..--..+....+.+
T Consensus 22 ~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil-~~l~~~~~~~~~~~i~~lYIsPLkALn~Di~~rL~~~~~~~ 100 (814)
T COG1201 22 SLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVI-NELLSLGKGKLEDGIYALYISPLKALNNDIRRRLEEPLREL 100 (814)
T ss_pred CCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHH-HHHHhccCCCCCCceEEEEeCcHHHHHHHHHHHHHHHHHHc
Confidence 58999999999999999 8999999999999999996 665432 47765 555688887777788888899
Q ss_pred CCeEEEEcCCCCHHHHHhccC--CCeEEECCCcchhhHHHHhhccchhhhhccCCCCceEEEeecchhhhhccCCCceec
Q 002515 71 GLSVGLIQRGMIPEERRSNYR--CDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLI 148 (913)
Q Consensus 71 GLsv~~i~~~~~~~~r~~aY~--~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~tPLii 148 (913)
|+.|.+-+|++++.+|+..-. .||+.+||..|+.-..-. .-...++ .+.|+||||+|.+...+.
T Consensus 101 G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~-----~~r~~l~---~vr~VIVDEiHel~~sKR------ 166 (814)
T COG1201 101 GIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSP-----KFRELLR---DVRYVIVDEIHALAESKR------ 166 (814)
T ss_pred CCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCH-----HHHHHhc---CCcEEEeehhhhhhcccc------
Confidence 999999999999888876544 499999999986432211 1124556 899999999999753221
Q ss_pred cCCCCCCccchHHHHHHHHHhccCCCeEEeCCCCeeeccHhhHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHhhccCc
Q 002515 149 SGEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDV 228 (913)
Q Consensus 149 Sg~~~~~~~~y~~~~~~v~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~l~~~i~~Al~A~~l~~~d~ 228 (913)
-+.|+- +.++ ...+
T Consensus 167 ----------------------------------G~~Lsl-~LeR--------------------------L~~l----- 180 (814)
T COG1201 167 ----------------------------------GVQLAL-SLER--------------------------LREL----- 180 (814)
T ss_pred ----------------------------------chhhhh-hHHH--------------------------HHhh-----
Confidence 111000 0000 0000
Q ss_pred ceEEECCeEEEEeCCCCccccCcccChhhhHHHHhHhCCcccCCceeeeeeeehhHHhhcCcccccCCCcccH--HHHHH
Q 002515 229 QYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTE--EKEFL 306 (913)
Q Consensus 229 dYiV~dg~V~iVD~~TGR~~~gr~ws~GLHQaieaKEgv~i~~e~~t~a~IT~q~~F~~Y~kL~GmTGTa~te--~~Ef~ 306 (913)
+| .+| --|+|+|.++. ...|.
T Consensus 181 ---------------~~----------------------------------~~q--------RIGLSATV~~~~~varfL 203 (814)
T COG1201 181 ---------------AG----------------------------------DFQ--------RIGLSATVGPPEEVAKFL 203 (814)
T ss_pred ---------------Cc----------------------------------ccE--------EEeehhccCCHHHHHHHh
Confidence 00 001 12677777752 23344
Q ss_pred HHhC--CCeEEeCCCCCc-ccccCCCeEEeChhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHCC-CCeEE
Q 002515 307 KMFQ--MPVIEVPTNLPN-IRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQG-IPHNV 382 (913)
Q Consensus 307 ~iY~--l~vv~IPt~~p~-~R~d~~d~v~~t~~~k~~aii~ei~~~~~~grPVLI~t~Si~~SE~ls~~L~~~g-i~~~v 382 (913)
--.+ +.++.++-.++. ++.-.|..-......-|.++++.|.+..++.+.+||||+|...+|.++..|++.+ ++..+
T Consensus 204 ~g~~~~~~Iv~~~~~k~~~i~v~~p~~~~~~~~~~~~~~~~~i~~~v~~~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~ 283 (814)
T COG1201 204 VGFGDPCEIVDVSAAKKLEIKVISPVEDLIYDEELWAALYERIAELVKKHRTTLIFTNTRSGAERLAFRLKKLGPDIIEV 283 (814)
T ss_pred cCCCCceEEEEcccCCcceEEEEecCCccccccchhHHHHHHHHHHHhhcCcEEEEEeChHHHHHHHHHHHHhcCCceee
Confidence 3333 223333333322 2222222111112456777888888888888999999999999999999999987 88888
Q ss_pred eccCC-cchhhHHHHHHhcCCCccEEEEcCCCCCCcce
Q 002515 383 LNARP-KYAAREAETVAQAGRKYAITISTNMAGRGTDI 419 (913)
Q Consensus 383 LnA~~-k~~~~Ea~Iia~AG~~G~VTIATnmAGRGTDI 419 (913)
.|+-- +....++|=--+.|. =.+.|||.-.--|+||
T Consensus 284 HHgSlSre~R~~vE~~lk~G~-lravV~TSSLELGIDi 320 (814)
T COG1201 284 HHGSLSRELRLEVEERLKEGE-LKAVVATSSLELGIDI 320 (814)
T ss_pred ecccccHHHHHHHHHHHhcCC-ceEEEEccchhhcccc
Confidence 88631 222333444446676 4666999999999999
No 79
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.60 E-value=3.6e-14 Score=155.47 Aligned_cols=277 Identities=19% Similarity=0.282 Sum_probs=182.7
Q ss_pred CCchhHHHHHHHHh----cCCeEEecCCCchHHHHHHHHHHH---HHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeE
Q 002515 2 RHFDVQIIGGAVLH----DGSIAEMKTGEGKTLVSTLAAYLN---ALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSV 74 (913)
Q Consensus 2 rp~dvQl~g~l~L~----~G~IaEm~TGEGKTLva~lpa~l~---AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLsv 74 (913)
+|-.+|-.+.+.|+ ++-|||.+.|.|||.+|+|.+... .+.--.+.+++|+++||.+--+-+....+|-++++
T Consensus 112 kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~~~~PQ~iCLaPtrELA~Q~~eVv~eMGKf~~ita 191 (477)
T KOG0332|consen 112 KPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPDVVVPQCICLAPTRELAPQTGEVVEEMGKFTELTA 191 (477)
T ss_pred CcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCccccCCCceeeCchHHHHHHHHHHHHHhcCceeeeE
Confidence 68899999999775 577999999999999999988642 13345778899999999998887777777779999
Q ss_pred EEEcCCCCHHHHHhccCCCeEEECCCcchhhHHHHhhccchhhhhccCCCCceEEEeecchhhhhccCCCceeccCCCCC
Q 002515 75 GLIQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASK 154 (913)
Q Consensus 75 ~~i~~~~~~~~r~~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~tPLiiSg~~~~ 154 (913)
..+..+. ...|-.--.+.|+.||++-| -||.+-.- -...+ ...+.++||||+|+--.+..
T Consensus 192 ~yair~s-k~~rG~~i~eqIviGTPGtv-~Dlm~klk-----~id~~---kikvfVlDEAD~Mi~tqG~~---------- 251 (477)
T KOG0332|consen 192 SYAIRGS-KAKRGNKLTEQIVIGTPGTV-LDLMLKLK-----CIDLE---KIKVFVLDEADVMIDTQGFQ---------- 251 (477)
T ss_pred EEEecCc-ccccCCcchhheeeCCCccH-HHHHHHHH-----hhChh---hceEEEecchhhhhhccccc----------
Confidence 9888765 22233344568999999997 45553311 11223 78899999999998333211
Q ss_pred CccchHHHHHHHHHhccCCCeEEeCCCCeeeccHhhHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHhhccCcceEEEC
Q 002515 155 DVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVRN 234 (913)
Q Consensus 155 ~~~~y~~~~~~v~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~l~~~i~~Al~A~~l~~~d~dYiV~d 234 (913)
..+-.+...+. .+.++. |||++.. +-+. +. |.. +|.|
T Consensus 252 -----D~S~rI~~~lP---------~~~Qll-----------------LFSATf~--e~V~-~F-a~k--------ivpn 288 (477)
T KOG0332|consen 252 -----DQSIRIMRSLP---------RNQQLL-----------------LFSATFV--EKVA-AF-ALK--------IVPN 288 (477)
T ss_pred -----ccchhhhhhcC---------CcceEE-----------------eeechhH--HHHH-HH-HHH--------hcCC
Confidence 01112222222 234444 6665531 1111 01 111 2333
Q ss_pred CeEEEEeCCCCccccCcccChhhhHHHHhHhCCcccCCceeeeeeeehhHHhhcCcccccCCCcccHHHHHHHHhCCCeE
Q 002515 235 GKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPVI 314 (913)
Q Consensus 235 g~V~iVD~~TGR~~~gr~ws~GLHQaieaKEgv~i~~e~~t~a~IT~q~~F~~Y~kL~GmTGTa~te~~Ef~~iY~l~vv 314 (913)
-.++++-. +-++ +-.+|.+-|.
T Consensus 289 ~n~i~Lk~-----------------------------eel~-----------------------------L~~IkQlyv~ 310 (477)
T KOG0332|consen 289 ANVIILKR-----------------------------EELA-----------------------------LDNIKQLYVL 310 (477)
T ss_pred Cceeeeeh-----------------------------hhcc-----------------------------ccchhhheee
Confidence 33333321 0011 1122222221
Q ss_pred EeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEeccCCcchhhHH
Q 002515 315 EVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREA 394 (913)
Q Consensus 315 ~IPt~~p~~R~d~~d~v~~t~~~k~~aii~ei~~~~~~grPVLI~t~Si~~SE~ls~~L~~~gi~~~vLnA~~k~~~~Ea 394 (913)
-..+++|++++++ +-....-|+. +|||.+...++.|+..|.+.|-...+|++...-.+| +
T Consensus 311 -----------------C~~~~~K~~~l~~-lyg~~tigqs-iIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R-~ 370 (477)
T KOG0332|consen 311 -----------------CACRDDKYQALVN-LYGLLTIGQS-IIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQR-A 370 (477)
T ss_pred -----------------ccchhhHHHHHHH-HHhhhhhhhe-EEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHH-H
Confidence 3577899999887 6566666765 689999999999999999999999999997432333 4
Q ss_pred HHHH--hcCCCccEEEEcCCCCCCccee
Q 002515 395 ETVA--QAGRKYAITISTNMAGRGTDII 420 (913)
Q Consensus 395 ~Iia--~AG~~G~VTIATnmAGRGTDIk 420 (913)
.||. +-| .-.|.|+||...||+|+.
T Consensus 371 ~ii~~Fr~g-~~kVLitTnV~ARGiDv~ 397 (477)
T KOG0332|consen 371 AIIDRFREG-KEKVLITTNVCARGIDVA 397 (477)
T ss_pred HHHHHHhcC-cceEEEEechhhcccccc
Confidence 4554 677 568999999999999995
No 80
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.60 E-value=8.8e-15 Score=162.14 Aligned_cols=279 Identities=19% Similarity=0.188 Sum_probs=197.9
Q ss_pred CCchhHHHHHHHHhcCC--eEEecCCCchHHHHHHHHHHHHHcCC-----cEEEEecCHHHHHHHHHHHHHHhhhcCCeE
Q 002515 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALTGE-----GVHVVTVNDYLAQRDAEWMERVHRFLGLSV 74 (913)
Q Consensus 2 rp~dvQl~g~l~L~~G~--IaEm~TGEGKTLva~lpa~l~AL~G~-----~VhVvT~NdyLA~RDae~~~~~y~~LGLsv 74 (913)
.|+|+|--.++.+++|+ ++-..||+|||.+++||++ .+|.++ ...++.||+.||.+-..-...+.++.++.+
T Consensus 43 ~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~-e~Lk~~s~~g~RalilsptreLa~qtlkvvkdlgrgt~lr~ 121 (529)
T KOG0337|consen 43 TPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMI-EKLKSHSQTGLRALILSPTRELALQTLKVVKDLGRGTKLRQ 121 (529)
T ss_pred CCCchhcccccceeeccccceeeecCCcchhhHHHHHH-HHHhhccccccceeeccCcHHHHHHHHHHHHHhccccchhh
Confidence 48999999999999999 7788899999999999998 566544 579999999999999999999999999999
Q ss_pred EEEcCCCCHHHHHhcc--CCCeEEECCCcchhhHHHHhhccchhhhhccCCCCceEEEeecchhhhhccCCCceeccCCC
Q 002515 75 GLIQRGMIPEERRSNY--RCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEA 152 (913)
Q Consensus 75 ~~i~~~~~~~~r~~aY--~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~tPLiiSg~~ 152 (913)
++++++-+.+++-..- +.||+.+|++.+- ++.-.. .+.++ ...|++.||+|+++-..
T Consensus 122 s~~~ggD~~eeqf~~l~~npDii~ATpgr~~------h~~vem-~l~l~---sveyVVfdEadrlfemg----------- 180 (529)
T KOG0337|consen 122 SLLVGGDSIEEQFILLNENPDIIIATPGRLL------HLGVEM-TLTLS---SVEYVVFDEADRLFEMG----------- 180 (529)
T ss_pred hhhcccchHHHHHHHhccCCCEEEecCceee------eeehhe-ecccc---ceeeeeehhhhHHHhhh-----------
Confidence 9999988777776555 5899999999862 111111 13455 89999999999998332
Q ss_pred CCCccchHHHHHHHHHhccCCCeEEeCCCCeeeccHhhHHHHHHHhccCCCCCCCCc--HHHHHHHHHHHHHhhccCcce
Q 002515 153 SKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDP--WARFVMNALKAKEFYRRDVQY 230 (913)
Q Consensus 153 ~~~~~~y~~~~~~v~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~--l~~~i~~Al~A~~l~~~d~dY 230 (913)
+-++..+++..+.. +++.. +|+++.+ ++.+..+-+ ...+
T Consensus 181 -----fqeql~e~l~rl~~---------~~QTl-----------------lfSatlp~~lv~fakaGl------~~p~-- 221 (529)
T KOG0337|consen 181 -----FQEQLHEILSRLPE---------SRQTL-----------------LFSATLPRDLVDFAKAGL------VPPV-- 221 (529)
T ss_pred -----hHHHHHHHHHhCCC---------cceEE-----------------EEeccCchhhHHHHHccC------CCCc--
Confidence 33567777777754 44554 6776543 222222111 1010
Q ss_pred EEECCeEEEEeCCCCccccCcccChhhhHHHHhHhCCcccCCceeeeeeeehhHHhhcCcccccCCCcccHHHHHHHHhC
Q 002515 231 IVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQ 310 (913)
Q Consensus 231 iV~dg~V~iVD~~TGR~~~gr~ws~GLHQaieaKEgv~i~~e~~t~a~IT~q~~F~~Y~kL~GmTGTa~te~~Ef~~iY~ 310 (913)
.+=+|. .++-++-| .
T Consensus 222 ------lVRldv-------etkise~l----------------------------------------------------k 236 (529)
T KOG0337|consen 222 ------LVRLDV-------ETKISELL----------------------------------------------------K 236 (529)
T ss_pred ------eEEeeh-------hhhcchhh----------------------------------------------------h
Confidence 011221 00101000 0
Q ss_pred CCeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEeccCCcch
Q 002515 311 MPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYA 390 (913)
Q Consensus 311 l~vv~IPt~~p~~R~d~~d~v~~t~~~k~~aii~ei~~~~~~grPVLI~t~Si~~SE~ls~~L~~~gi~~~vLnA~~k~~ 390 (913)
+.+ ...-.++|..++..-+.... .....+||+.+...+|.+...|...|+.+..+.+..+++
T Consensus 237 ~~f-----------------~~~~~a~K~aaLl~il~~~~-~~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~ 298 (529)
T KOG0337|consen 237 VRF-----------------FRVRKAEKEAALLSILGGRI-KDKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQE 298 (529)
T ss_pred hhe-----------------eeeccHHHHHHHHHHHhccc-cccceeEEecccchHHHHHHHHHhcCCCccccccccChH
Confidence 011 13455678877665554432 245789999999999999999999999998888755555
Q ss_pred hhHHHHHHhcCCCccEEEEcCCCCCCcceecCCC
Q 002515 391 AREAETVAQAGRKYAITISTNMAGRGTDIILGGN 424 (913)
Q Consensus 391 ~~Ea~Iia~AG~~G~VTIATnmAGRGTDIkLgg~ 424 (913)
+|-..+-.--|..+.+.|.|+.|.||.||.++.|
T Consensus 299 aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldn 332 (529)
T KOG0337|consen 299 ARKINGRDFRGRKTSILVVTDVAARGLDIPLLDN 332 (529)
T ss_pred hhhhccccccCCccceEEEehhhhccCCCccccc
Confidence 5555566655668889999999999999999864
No 81
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.59 E-value=5e-14 Score=165.28 Aligned_cols=243 Identities=23% Similarity=0.309 Sum_probs=175.5
Q ss_pred HHhcCCeEEecCCCchHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHHhccC-
Q 002515 13 VLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNYR- 91 (913)
Q Consensus 13 ~L~~G~IaEm~TGEGKTLva~lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLsv~~i~~~~~~~~r~~aY~- 91 (913)
.|.+|.+ |+|||+||+++++...-.|.+|-++.|++-||+|-++.+..++..+||+|+..++.+....|++...
T Consensus 286 RLlQGDV-----GSGKTvVA~laml~ai~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~ 360 (677)
T COG1200 286 RLLQGDV-----GSGKTVVALLAMLAAIEAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQ 360 (677)
T ss_pred HHhccCc-----CCCHHHHHHHHHHHHHHcCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHH
Confidence 3455655 9999999999999888899999999999999999999999999999999999999999888887653
Q ss_pred -----CCeEEECCCcchhhHHHHhhccchhhhhccCCCCceEEEeecchhhhhccCCCceeccCCCCCCccchHHHHHHH
Q 002515 92 -----CDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVA 166 (913)
Q Consensus 92 -----~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~tPLiiSg~~~~~~~~y~~~~~~v 166 (913)
.||+.||..=| .|.... . .+.++||||-|++=.-.
T Consensus 361 l~~G~~~ivVGTHALi-----Qd~V~F-------~---~LgLVIiDEQHRFGV~Q------------------------- 400 (677)
T COG1200 361 LASGEIDIVVGTHALI-----QDKVEF-------H---NLGLVIIDEQHRFGVHQ------------------------- 400 (677)
T ss_pred HhCCCCCEEEEcchhh-----hcceee-------c---ceeEEEEeccccccHHH-------------------------
Confidence 69999999864 233322 3 78999999999852100
Q ss_pred HHhccCCCeEEeCCCCeeeccHhhHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHhhccCcceEEECCeEEEEeCCCCc
Q 002515 167 ELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVRNGKALIINELTGR 246 (913)
Q Consensus 167 ~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~l~~~i~~Al~A~~l~~~d~dYiV~dg~V~iVD~~TGR 246 (913)
..+|+++ +.
T Consensus 401 ------------------------------------------------R~~L~~K-----G~------------------ 409 (677)
T COG1200 401 ------------------------------------------------RLALREK-----GE------------------ 409 (677)
T ss_pred ------------------------------------------------HHHHHHh-----CC------------------
Confidence 0011110 00
Q ss_pred cccCcccChhhhHHHHhHhCCcccCCceeeeeeeehhHHhhcCcccccCCCcccHHHHH-HHHhC-CCeEEe---CCCCC
Q 002515 247 VEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEF-LKMFQ-MPVIEV---PTNLP 321 (913)
Q Consensus 247 ~~~gr~ws~GLHQaieaKEgv~i~~e~~t~a~IT~q~~F~~Y~kL~GmTGTa~te~~Ef-~~iY~-l~vv~I---Pt~~p 321 (913)
.|+...-||+|--. ..+ ...|| |+|..| |+-
T Consensus 410 ----------------------------------------~~Ph~LvMTATPIP--RTLAlt~fgDldvS~IdElP~G-- 445 (677)
T COG1200 410 ----------------------------------------QNPHVLVMTATPIP--RTLALTAFGDLDVSIIDELPPG-- 445 (677)
T ss_pred ----------------------------------------CCCcEEEEeCCCch--HHHHHHHhccccchhhccCCCC--
Confidence 03445668888753 223 45665 576554 553
Q ss_pred cccccCCCeEEeChhHHHHHHHHHHHHHHhcCCcEEEEecchhhHH--------HHHHHHHHC--CCCeEEeccCCcchh
Q 002515 322 NIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSE--------YLSDLLKQQ--GIPHNVLNARPKYAA 391 (913)
Q Consensus 322 ~~R~d~~d~v~~t~~~k~~aii~ei~~~~~~grPVLI~t~Si~~SE--------~ls~~L~~~--gi~~~vLnA~~k~~~ 391 (913)
|+.-...+.. .++...+++.|.....+||-+-++|+=|++|| .+++.|+.. +....++|++.+.++
T Consensus 446 --RkpI~T~~i~--~~~~~~v~e~i~~ei~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~e 521 (677)
T COG1200 446 --RKPITTVVIP--HERRPEVYERIREEIAKGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAE 521 (677)
T ss_pred --CCceEEEEec--cccHHHHHHHHHHHHHcCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHH
Confidence 3322233332 35666777788777789999999999999987 345556643 456789999877777
Q ss_pred hHHHHHH-hcCCCccEEEEcCCCCCCccee
Q 002515 392 REAETVA-QAGRKYAITISTNMAGRGTDII 420 (913)
Q Consensus 392 ~Ea~Iia-~AG~~G~VTIATnmAGRGTDIk 420 (913)
+++-+-+ ++| ...|.|||..--=|+|+.
T Consensus 522 Kd~vM~~Fk~~-e~~ILVaTTVIEVGVdVP 550 (677)
T COG1200 522 KDAVMEAFKEG-EIDILVATTVIEVGVDVP 550 (677)
T ss_pred HHHHHHHHHcC-CCcEEEEeeEEEecccCC
Confidence 7766666 555 789999999988888873
No 82
>PRK09694 helicase Cas3; Provisional
Probab=99.58 E-value=3.4e-13 Score=165.92 Aligned_cols=82 Identities=18% Similarity=0.242 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHCC---CCeEEeccCCcchhh---HHHHHHh---cCCC--ccEEE
Q 002515 340 EYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQG---IPHNVLNARPKYAAR---EAETVAQ---AGRK--YAITI 408 (913)
Q Consensus 340 ~aii~ei~~~~~~grPVLI~t~Si~~SE~ls~~L~~~g---i~~~vLnA~~k~~~~---Ea~Iia~---AG~~--G~VTI 408 (913)
.++++.+.+..+.|.+|||||+|++.++.+.+.|++.+ .++.++|++.....| |.+++.. .|+. +.|.|
T Consensus 547 ~~~l~~i~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILV 626 (878)
T PRK09694 547 LTLLQRMIAAANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILV 626 (878)
T ss_pred HHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEE
Confidence 45677777767789999999999999999999999875 678899996333333 4456653 3432 57999
Q ss_pred EcCCCCCCcceec
Q 002515 409 STNMAGRGTDIIL 421 (913)
Q Consensus 409 ATnmAGRGTDIkL 421 (913)
||+.+.||.||..
T Consensus 627 aTQViE~GLDId~ 639 (878)
T PRK09694 627 ATQVVEQSLDLDF 639 (878)
T ss_pred ECcchhheeecCC
Confidence 9999999999954
No 83
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.53 E-value=6.3e-13 Score=151.78 Aligned_cols=269 Identities=23% Similarity=0.289 Sum_probs=192.3
Q ss_pred chhHHHHHHH-HhcCC--eEEecCCCchHHHHHHHHHHHHHc-CCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcC
Q 002515 4 FDVQIIGGAV-LHDGS--IAEMKTGEGKTLVSTLAAYLNALT-GEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQR 79 (913)
Q Consensus 4 ~dvQl~g~l~-L~~G~--IaEm~TGEGKTLva~lpa~l~AL~-G~~VhVvT~NdyLA~RDae~~~~~y~~LGLsv~~i~~ 79 (913)
.|||.+++=+ |++|. ++--.|++||||+.-|+-+-++|. |++-..++|=-.||.|-+++|..=|..||++|+.-.+
T Consensus 218 lPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~~g~KmlfLvPLVALANQKy~dF~~rYs~LglkvairVG 297 (830)
T COG1202 218 LPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLSGGKKMLFLVPLVALANQKYEDFKERYSKLGLKVAIRVG 297 (830)
T ss_pred cchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHhCCCeEEEEehhHHhhcchHHHHHHHhhcccceEEEEec
Confidence 4899998764 67777 888899999999999999999999 7888899999999999999999999999999987655
Q ss_pred CCCHHHHH------hccCCCeEEECCCcchhhHHHHhhccchhhhhccCCCCceEEEeecchhhhhccCCCceeccCCCC
Q 002515 80 GMIPEERR------SNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEAS 153 (913)
Q Consensus 80 ~~~~~~r~------~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~tPLiiSg~~~ 153 (913)
-.-...+. ..-+|||++||-. |+|||... ...+. ....++|||+|.+ -|+-|-|
T Consensus 298 ~srIk~~~~pv~~~t~~dADIIVGTYE--GiD~lLRt------g~~lg---diGtVVIDEiHtL-~deERG~-------- 357 (830)
T COG1202 298 MSRIKTREEPVVVDTSPDADIIVGTYE--GIDYLLRT------GKDLG---DIGTVVIDEIHTL-EDEERGP-------- 357 (830)
T ss_pred hhhhcccCCccccCCCCCCcEEEeech--hHHHHHHc------CCccc---ccceEEeeeeeec-cchhccc--------
Confidence 32121111 1346899999986 68998421 12233 7889999999975 3543332
Q ss_pred CCccchHHHHHHHHHhccCCCeEEeCCCCeeeccHhhHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHhhccCcceEEE
Q 002515 154 KDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVR 233 (913)
Q Consensus 154 ~~~~~y~~~~~~v~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~l~~~i~~Al~A~~l~~~d~dYiV~ 233 (913)
..+-++..|. ++|.
T Consensus 358 -------RLdGLI~RLr---------------------------------------------------~l~~-------- 371 (830)
T COG1202 358 -------RLDGLIGRLR---------------------------------------------------YLFP-------- 371 (830)
T ss_pred -------chhhHHHHHH---------------------------------------------------HhCC--------
Confidence 2222222221 1111
Q ss_pred CCeEEEEeCCCCccccCcccChhhhHHHHhHhCCcccCCceeeeeeeehhHHhhcCcccccCCCcccHHHHHHHHhCCCe
Q 002515 234 NGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPV 313 (913)
Q Consensus 234 dg~V~iVD~~TGR~~~gr~ws~GLHQaieaKEgv~i~~e~~t~a~IT~q~~F~~Y~kL~GmTGTa~te~~Ef~~iY~l~v 313 (913)
+ ..+.|+|+|.|+ .+|+.+..|+..
T Consensus 372 ----------------~--------------------------------------AQ~i~LSATVgN-p~elA~~l~a~l 396 (830)
T COG1202 372 ----------------G--------------------------------------AQFIYLSATVGN-PEELAKKLGAKL 396 (830)
T ss_pred ----------------C--------------------------------------CeEEEEEeecCC-hHHHHHHhCCee
Confidence 0 024578888887 556777777765
Q ss_pred EEeCCCCCc--ccccCCCeEEe-ChhHHHHHHHHHHHHHH----hcC--CcEEEEecchhhHHHHHHHHHHCCCCeEEec
Q 002515 314 IEVPTNLPN--IRVDLPIQSFA-TARGKWEYARQEVESMF----RLG--RPVLVGSTSVENSEYLSDLLKQQGIPHNVLN 384 (913)
Q Consensus 314 v~IPt~~p~--~R~d~~d~v~~-t~~~k~~aii~ei~~~~----~~g--rPVLI~t~Si~~SE~ls~~L~~~gi~~~vLn 384 (913)
+.- -++|+ -| ..+|. ++.+||+-|...+++-. ++| --.+|||.|-..++.|+..|..+|++..--|
T Consensus 397 V~y-~~RPVplEr----Hlvf~~~e~eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYH 471 (830)
T COG1202 397 VLY-DERPVPLER----HLVFARNESEKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYH 471 (830)
T ss_pred Eee-cCCCCChhH----eeeeecCchHHHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCccccccc
Confidence 432 22332 23 46676 48999998887776532 222 3579999999999999999999999999999
Q ss_pred cCCcchhhHHHHHHhc--CCCccEEEEcCCCCCCccee
Q 002515 385 ARPKYAAREAETVAQA--GRKYAITISTNMAGRGTDII 420 (913)
Q Consensus 385 A~~k~~~~Ea~Iia~A--G~~G~VTIATnmAGRGTDIk 420 (913)
|+..+.++ ..+.++ -+.=++.|.|.-.|=|+|+.
T Consensus 472 aGL~y~eR--k~vE~~F~~q~l~~VVTTAAL~AGVDFP 507 (830)
T COG1202 472 AGLPYKER--KSVERAFAAQELAAVVTTAALAAGVDFP 507 (830)
T ss_pred CCCcHHHH--HHHHHHHhcCCcceEeehhhhhcCCCCc
Confidence 98655444 445433 33447789999999999996
No 84
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.53 E-value=2.7e-11 Score=150.26 Aligned_cols=83 Identities=14% Similarity=0.193 Sum_probs=65.7
Q ss_pred hHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHH-HHCCCCeEEeccCCcchhhHHHHHH-hcCC-CccEEEEcCC
Q 002515 336 RGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLL-KQQGIPHNVLNARPKYAAREAETVA-QAGR-KYAITISTNM 412 (913)
Q Consensus 336 ~~k~~aii~ei~~~~~~grPVLI~t~Si~~SE~ls~~L-~~~gi~~~vLnA~~k~~~~Ea~Iia-~AG~-~G~VTIATnm 412 (913)
..|...+++.+... .+.+|||||.+...+..|++.| ...|+++.++|++....+|+..+-. +.+. ...|.|||+.
T Consensus 478 d~Ki~~L~~~L~~~--~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsTdv 555 (956)
T PRK04914 478 DPRVEWLIDFLKSH--RSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCSEI 555 (956)
T ss_pred CHHHHHHHHHHHhc--CCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHHhcCCCCccEEEechh
Confidence 46777777666542 4779999999999999999999 5679999999998666667655544 3332 4689999999
Q ss_pred CCCCccee
Q 002515 413 AGRGTDII 420 (913)
Q Consensus 413 AGRGTDIk 420 (913)
+|||.|+.
T Consensus 556 gseGlNlq 563 (956)
T PRK04914 556 GSEGRNFQ 563 (956)
T ss_pred hccCCCcc
Confidence 99999984
No 85
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.53 E-value=6e-13 Score=151.22 Aligned_cols=150 Identities=19% Similarity=0.272 Sum_probs=110.1
Q ss_pred HHHHHHHHhcCCeEEecCCCchHHHHHHHHH-HHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCC---eEEEEcCCCC
Q 002515 7 QIIGGAVLHDGSIAEMKTGEGKTLVSTLAAY-LNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGL---SVGLIQRGMI 82 (913)
Q Consensus 7 Ql~g~l~L~~G~IaEm~TGEGKTLva~lpa~-l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGL---sv~~i~~~~~ 82 (913)
+.+++=+|.++.++-|.||=|||.+|+|.+. .....|+.|.++.|+.=|..|.++.+.. ++|+ .++..+|..+
T Consensus 21 ~~i~a~al~~NtLvvlPTGLGKT~IA~~V~~~~l~~~~~kvlfLAPTKPLV~Qh~~~~~~---v~~ip~~~i~~ltGev~ 97 (542)
T COG1111 21 LNIAAKALFKNTLVVLPTGLGKTFIAAMVIANRLRWFGGKVLFLAPTKPLVLQHAEFCRK---VTGIPEDEIAALTGEVR 97 (542)
T ss_pred HHHHHHHhhcCeEEEecCCccHHHHHHHHHHHHHHhcCCeEEEecCCchHHHHHHHHHHH---HhCCChhheeeecCCCC
Confidence 3466667888889999999999998777664 3344555899999999999988777654 5566 4557888999
Q ss_pred HHHHHhccC-CCeEEECCCcchhhHHHHhhccchhhhhccCCCCceEEEeecchhh------------hhccCCCceecc
Q 002515 83 PEERRSNYR-CDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV------------LIDEGRNPLLIS 149 (913)
Q Consensus 83 ~~~r~~aY~-~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsi------------LiDea~tPLiiS 149 (913)
|++|...|. +.|.++||--+.-|.+.-.+. .. .+..+|+||||+- .+-.+.+|+|+.
T Consensus 98 p~~R~~~w~~~kVfvaTPQvveNDl~~Grid-------~~---dv~~lifDEAHRAvGnyAYv~Va~~y~~~~k~~~ilg 167 (542)
T COG1111 98 PEEREELWAKKKVFVATPQVVENDLKAGRID-------LD---DVSLLIFDEAHRAVGNYAYVFVAKEYLRSAKNPLILG 167 (542)
T ss_pred hHHHHHHHhhCCEEEeccHHHHhHHhcCccC-------hH---HceEEEechhhhccCcchHHHHHHHHHHhccCceEEE
Confidence 999999997 599999998876665433321 22 7889999999963 234468999886
Q ss_pred CCCCCCccchHHHHHHHHHhc
Q 002515 150 GEASKDVARYPVAAKVAELLV 170 (913)
Q Consensus 150 g~~~~~~~~y~~~~~~v~~l~ 170 (913)
=..++.+ .-..+.++++.|-
T Consensus 168 LTASPGs-~~ekI~eV~~nLg 187 (542)
T COG1111 168 LTASPGS-DLEKIQEVVENLG 187 (542)
T ss_pred EecCCCC-CHHHHHHHHHhCC
Confidence 4333333 2346777777773
No 86
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.51 E-value=6.6e-13 Score=159.88 Aligned_cols=83 Identities=13% Similarity=0.108 Sum_probs=60.2
Q ss_pred EeChhHHHHHHHHHHHHHH-hcCCcEEEEecchhhHHHHHHHHHHCCCCeEEeccCCcchhhHHHHHH-hcCCCccEEEE
Q 002515 332 FATARGKWEYARQEVESMF-RLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVA-QAGRKYAITIS 409 (913)
Q Consensus 332 ~~t~~~k~~aii~ei~~~~-~~grPVLI~t~Si~~SE~ls~~L~~~gi~~~vLnA~~k~~~~Ea~Iia-~AG~~G~VTIA 409 (913)
+.....|+.++...+ +.| ..|.++||||.++..++.++..| |. .++++...+.+|+.-+-. +.|..-.+.|+
T Consensus 475 ~~~np~K~~~~~~Li-~~he~~g~kiLVF~~~~~~l~~~a~~L---~~--~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~ 548 (732)
T TIGR00603 475 YVMNPNKFRACQFLI-RFHEQRGDKIIVFSDNVFALKEYAIKL---GK--PFIYGPTSQQERMQILQNFQHNPKVNTIFL 548 (732)
T ss_pred hhhChHHHHHHHHHH-HHHhhcCCeEEEEeCCHHHHHHHHHHc---CC--ceEECCCCHHHHHHHHHHHHhCCCccEEEE
Confidence 445667887755544 444 48899999999999999999887 33 457887555566544333 34534478899
Q ss_pred cCCCCCCccee
Q 002515 410 TNMAGRGTDII 420 (913)
Q Consensus 410 TnmAGRGTDIk 420 (913)
|+.+++|+|+.
T Consensus 549 SkVgdeGIDlP 559 (732)
T TIGR00603 549 SKVGDTSIDLP 559 (732)
T ss_pred ecccccccCCC
Confidence 99999999994
No 87
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.51 E-value=6.6e-13 Score=166.93 Aligned_cols=83 Identities=16% Similarity=0.138 Sum_probs=60.3
Q ss_pred hHHHHHHHHHHHHHH-hcCCcEEEEecchhhHHHHHHHHHHCCCCe---EEeccCCcchhhHHHHHHhcCCCccEEEEcC
Q 002515 336 RGKWEYARQEVESMF-RLGRPVLVGSTSVENSEYLSDLLKQQGIPH---NVLNARPKYAAREAETVAQAGRKYAITISTN 411 (913)
Q Consensus 336 ~~k~~aii~ei~~~~-~~grPVLI~t~Si~~SE~ls~~L~~~gi~~---~vLnA~~k~~~~Ea~Iia~AG~~G~VTIATn 411 (913)
.++..++++.+...+ .....||||+++.++.+.+++.|.+.++++ -.|++.....+++ .+....| .-.|.||||
T Consensus 268 ~d~l~~ll~~V~~l~~~~~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~-~Vf~~~g-~rkIIVATN 345 (1294)
T PRK11131 268 RDQLQAIFDAVDELGREGPGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQN-RVFQSHS-GRRIVLATN 345 (1294)
T ss_pred HHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHH-HHhcccC-CeeEEEecc
Confidence 445666666555443 344679999999999999999999998874 3578864333333 3444455 458999999
Q ss_pred CCCCCccee
Q 002515 412 MAGRGTDII 420 (913)
Q Consensus 412 mAGRGTDIk 420 (913)
+|.||+||.
T Consensus 346 IAEtSITIp 354 (1294)
T PRK11131 346 VAETSLTVP 354 (1294)
T ss_pred HHhhccccC
Confidence 999999995
No 88
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.50 E-value=7.7e-12 Score=147.06 Aligned_cols=263 Identities=19% Similarity=0.254 Sum_probs=180.6
Q ss_pred hHHHHHHHHhcCC--eEEecCCCchHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCH
Q 002515 6 VQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIP 83 (913)
Q Consensus 6 vQl~g~l~L~~G~--IaEm~TGEGKTLva~lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLsv~~i~~~~~~ 83 (913)
-|--.+-.+++|+ |+-|.||-||||.+-+||++. .| -+.||+|==.|=+.....+ ...|+.++++.+.++.
T Consensus 21 gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~--~G-~TLVVSPLiSLM~DQV~~l----~~~Gi~A~~lnS~l~~ 93 (590)
T COG0514 21 GQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL--EG-LTLVVSPLISLMKDQVDQL----EAAGIRAAYLNSTLSR 93 (590)
T ss_pred CHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhc--CC-CEEEECchHHHHHHHHHHH----HHcCceeehhhcccCH
Confidence 4555566677777 999999999999999999964 45 5677777666666544444 4678999999999999
Q ss_pred HHHHhccC------CCeEEECCCcchhhHHHHhhccchhhhhccCCCCceEEEeecchhhhhccCCCceeccCCCCCCcc
Q 002515 84 EERRSNYR------CDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVA 157 (913)
Q Consensus 84 ~~r~~aY~------~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~tPLiiSg~~~~~~~ 157 (913)
++++..+. .+++|-+|..+.-.+.++.+.. - ++..++|||||++. +
T Consensus 94 ~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~-------~---~i~l~vIDEAHCiS-q----------------- 145 (590)
T COG0514 94 EERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKR-------L---PISLVAIDEAHCIS-Q----------------- 145 (590)
T ss_pred HHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHh-------C---CCceEEechHHHHh-h-----------------
Confidence 98876553 4999999999887777666642 2 78899999999974 1
Q ss_pred chHHHHHHHHHhccCCCeEEeCCCCeeeccHhhHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHhhccCcceEEECCeE
Q 002515 158 RYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVRNGKA 237 (913)
Q Consensus 158 ~y~~~~~~v~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~l~~~i~~Al~A~~l~~~d~dYiV~dg~V 237 (913)
-+.||..+ +....
T Consensus 146 -------------WGhdFRP~----------------------------------Y~~lg-------------------- 158 (590)
T COG0514 146 -------------WGHDFRPD----------------------------------YRRLG-------------------- 158 (590)
T ss_pred -------------cCCccCHh----------------------------------HHHHH--------------------
Confidence 01122111 00000
Q ss_pred EEEeCCCCccccCcccChhhhHHHHhHhCCcccCCceeeeeeeehhHHhhcCcccccCCCcccH-HHHHHHHhCCC---e
Q 002515 238 LIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTE-EKEFLKMFQMP---V 313 (913)
Q Consensus 238 ~iVD~~TGR~~~gr~ws~GLHQaieaKEgv~i~~e~~t~a~IT~q~~F~~Y~kL~GmTGTa~te-~~Ef~~iY~l~---v 313 (913)
..+++++ -..+..+|+||... .....+..++. +
T Consensus 159 ------------------------~l~~~~~-------------------~~p~~AlTATA~~~v~~DI~~~L~l~~~~~ 195 (590)
T COG0514 159 ------------------------RLRAGLP-------------------NPPVLALTATATPRVRDDIREQLGLQDANI 195 (590)
T ss_pred ------------------------HHHhhCC-------------------CCCEEEEeCCCChHHHHHHHHHhcCCCcce
Confidence 0000110 01356788898754 45566666653 4
Q ss_pred EEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEeccCCcchhhH
Q 002515 314 IEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAARE 393 (913)
Q Consensus 314 v~IPt~~p~~R~d~~d~v~~t~~~k~~aii~ei~~~~~~grPVLI~t~Si~~SE~ls~~L~~~gi~~~vLnA~~k~~~~E 393 (913)
+..-.++|.++...-. ..+...+..-|.+ ..+..++|-+|+|.|...+|.+++.|...|+....-||+... .|
T Consensus 196 ~~~sfdRpNi~~~v~~--~~~~~~q~~fi~~---~~~~~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~--~e 268 (590)
T COG0514 196 FRGSFDRPNLALKVVE--KGEPSDQLAFLAT---VLPQLSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSN--EE 268 (590)
T ss_pred EEecCCCchhhhhhhh--cccHHHHHHHHHh---hccccCCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCH--HH
Confidence 5667788887633211 1123444442222 345778899999999999999999999999999999997543 44
Q ss_pred HHHHHhcCC--CccEEEEcCCCCCCccee
Q 002515 394 AETVAQAGR--KYAITISTNMAGRGTDII 420 (913)
Q Consensus 394 a~Iia~AG~--~G~VTIATnmAGRGTDIk 420 (913)
++.+.++-. ...|.|||+-.|=|+|-.
T Consensus 269 R~~~q~~f~~~~~~iiVAT~AFGMGIdKp 297 (590)
T COG0514 269 RERVQQAFLNDEIKVMVATNAFGMGIDKP 297 (590)
T ss_pred HHHHHHHHhcCCCcEEEEeccccCccCCC
Confidence 555555533 458999999999999984
No 89
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.50 E-value=2.2e-12 Score=158.97 Aligned_cols=277 Identities=22% Similarity=0.202 Sum_probs=183.9
Q ss_pred CCchhHHHHHHHHhcCC--eEEecCCCchHHHHHHHHHHHHHcCCcE--EEEecCHHHHHHHHHHHHHHhhhcC--CeEE
Q 002515 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALTGEGV--HVVTVNDYLAQRDAEWMERVHRFLG--LSVG 75 (913)
Q Consensus 2 rp~dvQl~g~l~L~~G~--IaEm~TGEGKTLva~lpa~l~AL~G~~V--hVvT~NdyLA~RDae~~~~~y~~LG--Lsv~ 75 (913)
++|.-|.-+.-.+++|+ |+.-.||+|||++|.+|+.=..|.+..- .++.|+..||....+.+..+-.-+| ++++
T Consensus 70 ~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~~a~AL~lYPtnALa~DQ~~rl~~~~~~~~~~v~~~ 149 (851)
T COG1205 70 RLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDPSARALLLYPTNALANDQAERLRELISDLPGKVTFG 149 (851)
T ss_pred cccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCcCccEEEEechhhhHhhHHHHHHHHHHhCCCcceee
Confidence 47899999999999997 9999999999999999998777777654 9999999999999999999999998 8888
Q ss_pred EEcCCCCHHHHHhccC--CCeEEECCCcchhhHHHHhhccch-hh-hhccCCCCceEEEeecchhhhhccCCCceeccCC
Q 002515 76 LIQRGMIPEERRSNYR--CDITYTNNSELGFDYLRDNLAANS-EQ-LVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGE 151 (913)
Q Consensus 76 ~i~~~~~~~~r~~aY~--~DI~YgT~~e~~fDyLrD~l~~~~-~~-~v~r~~R~~~~aIVDEvDsiLiDea~tPLiiSg~ 151 (913)
..+|+.++++|+..|. +||+.+++. .|.-.+..+. .- ...+ .+.|+||||+|.= +.++
T Consensus 150 ~y~Gdt~~~~r~~~~~~pp~IllTNpd-----MLh~~llr~~~~~~~~~~---~Lk~lVvDElHtY--rGv~-------- 211 (851)
T COG1205 150 RYTGDTPPEERRAIIRNPPDILLTNPD-----MLHYLLLRNHDAWLWLLR---NLKYLVVDELHTY--RGVQ-------- 211 (851)
T ss_pred eecCCCChHHHHHHHhCCCCEEEeCHH-----HHHHHhccCcchHHHHHh---cCcEEEEecceec--cccc--------
Confidence 8999999998887775 599966653 3332222111 11 2234 6999999999982 2211
Q ss_pred CCCCccchHHHHHHHHHhccCCCeEEeCCCCeeeccHhhHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHhhccCcceE
Q 002515 152 ASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYI 231 (913)
Q Consensus 152 ~~~~~~~y~~~~~~v~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~l~~~i~~Al~A~~l~~~d~dYi 231 (913)
.+ .++-+++.|. ..
T Consensus 212 ---GS----~vA~llRRL~---------------------------------------------~~-------------- 225 (851)
T COG1205 212 ---GS----EVALLLRRLL---------------------------------------------RR-------------- 225 (851)
T ss_pred ---hh----HHHHHHHHHH---------------------------------------------HH--------------
Confidence 00 1111111111 00
Q ss_pred EECCeEEEEeCCCCccccCcccChhhhHHHHhHhCCcccCCceeeeeeeehhHHhhc---CcccccCCCcccHHHHHHHH
Q 002515 232 VRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLY---PKLSGMTGTAKTEEKEFLKM 308 (913)
Q Consensus 232 V~dg~V~iVD~~TGR~~~gr~ws~GLHQaieaKEgv~i~~e~~t~a~IT~q~~F~~Y---~kL~GmTGTa~te~~Ef~~i 308 (913)
.+.| ..+.++|+|.++..+-..+.
T Consensus 226 -----------------------------------------------------~~~~~~~~q~i~~SAT~~np~e~~~~l 252 (851)
T COG1205 226 -----------------------------------------------------LRRYGSPLQIICTSATLANPGEFAEEL 252 (851)
T ss_pred -----------------------------------------------------HhccCCCceEEEEeccccChHHHHHHh
Confidence 0111 13557888888754444567
Q ss_pred hCCCeEE-eCCCCCcccc------cCCCeEEeC---hhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHH----HHHH
Q 002515 309 FQMPVIE-VPTNLPNIRV------DLPIQSFAT---ARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLS----DLLK 374 (913)
Q Consensus 309 Y~l~vv~-IPt~~p~~R~------d~~d~v~~t---~~~k~~aii~ei~~~~~~grPVLI~t~Si~~SE~ls----~~L~ 374 (913)
.|.++.. |.-.. ..+- ..|...+.. ..+++.....-+...+..|..+|+||.|-..+|.+. +.+.
T Consensus 253 ~~~~f~~~v~~~g-~~~~~~~~~~~~p~~~~~~~~~r~s~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~ 331 (851)
T COG1205 253 FGRDFEVPVDEDG-SPRGLRYFVRREPPIRELAESIRRSALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLV 331 (851)
T ss_pred cCCcceeeccCCC-CCCCceEEEEeCCcchhhhhhcccchHHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHh
Confidence 7777655 43221 1111 112111111 225665555556667889999999999999999996 4444
Q ss_pred HCC----CCeEEeccCCcchhhHHHHHH---hcCCCccEEEEcCCCCCCcce
Q 002515 375 QQG----IPHNVLNARPKYAAREAETVA---QAGRKYAITISTNMAGRGTDI 419 (913)
Q Consensus 375 ~~g----i~~~vLnA~~k~~~~Ea~Iia---~AG~~G~VTIATnmAGRGTDI 419 (913)
..+ ..+.+-.|. .+..|...|. +.| ...+.||||++-=|+||
T Consensus 332 ~~~~~l~~~v~~~~~~--~~~~er~~ie~~~~~g-~~~~~~st~Alelgidi 380 (851)
T COG1205 332 REGGKLLDAVSTYRAG--LHREERRRIEAEFKEG-ELLGVIATNALELGIDI 380 (851)
T ss_pred hcchhhhhheeecccc--CCHHHHHHHHHHHhcC-CccEEecchhhhhceee
Confidence 455 333444443 4556655443 456 44677999999999999
No 90
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=99.50 E-value=6.8e-13 Score=146.47 Aligned_cols=274 Identities=17% Similarity=0.190 Sum_probs=185.3
Q ss_pred CCchhHHHHHHHHhcCC--eEEecCCCchHHHHHHHHHHH-H--HcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEE
Q 002515 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLN-A--LTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGL 76 (913)
Q Consensus 2 rp~dvQl~g~l~L~~G~--IaEm~TGEGKTLva~lpa~l~-A--L~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLsv~~ 76 (913)
+|-.+|--|++...+|+ +++.++|.|||.++++++... . ..-..|.++.|+++||+++.+-+.+++..++.+|..
T Consensus 48 kPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~~ke~qalilaPtreLa~qi~~v~~~lg~~~~~~v~~ 127 (397)
T KOG0327|consen 48 KPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDMSVKETQALILAPTRELAQQIQKVVRALGDHMDVSVHA 127 (397)
T ss_pred CchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCcchHHHHHHHhcchHHHHHHHHHHHHhhhcccceeeee
Confidence 58899999999999999 999999999999998888633 1 112467899999999999999999999999999987
Q ss_pred EcCCCCH---HHHHhccCCCeEEECCCcchhhHHHHhhccchhhhhccCCCCceEEEeecchhhhhccCCCceeccCCCC
Q 002515 77 IQRGMIP---EERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEAS 153 (913)
Q Consensus 77 i~~~~~~---~~r~~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~tPLiiSg~~~ 153 (913)
..++.+- .++...-.+.||.||++++ +|.|.-+ . ..++ +....++||+|-||..+.
T Consensus 128 ~igg~~~~~~~~~i~~~~~hivvGTpgrV-~dml~~~-~-----l~~~---~iKmfvlDEaDEmLs~gf----------- 186 (397)
T KOG0327|consen 128 CIGGTNVRREDQALLKDKPHIVVGTPGRV-FDMLNRG-S-----LSTD---GIKMFVLDEADEMLSRGF----------- 186 (397)
T ss_pred ecCcccchhhhhhhhccCceeecCCchhH-HHhhccc-c-----cccc---ceeEEeecchHhhhccch-----------
Confidence 6666442 2333444579999999986 6655322 1 2334 899999999999996652
Q ss_pred CCccchHHHHHHHHHhccCCCeEEeCCCCeeeccHhhHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHhhccCcceEEE
Q 002515 154 KDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVR 233 (913)
Q Consensus 154 ~~~~~y~~~~~~v~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~l~~~i~~Al~A~~l~~~d~dYiV~ 233 (913)
-.++..+.+.+.+.. ++. |++++.+ .|+.-. ++.+++.-+
T Consensus 187 -----kdqI~~if~~lp~~v---------Qv~-----------------l~SAT~p--~~vl~v--t~~f~~~pv----- 226 (397)
T KOG0327|consen 187 -----KDQIYDIFQELPSDV---------QVV-----------------LLSATMP--SDVLEV--TKKFMREPV----- 226 (397)
T ss_pred -----HHHHHHHHHHcCcch---------hhe-----------------eecccCc--HHHHHH--HHHhccCce-----
Confidence 235566666665421 222 5665542 122211 233332111
Q ss_pred CCeEEEEeCCCCccccCcccChhhhHHHHhHhCCcccCCceeeeeeeehhHHhhcCcccccCCCcccHHHHHHHHhCCCe
Q 002515 234 NGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPV 313 (913)
Q Consensus 234 dg~V~iVD~~TGR~~~gr~ws~GLHQaieaKEgv~i~~e~~t~a~IT~q~~F~~Y~kL~GmTGTa~te~~Ef~~iY~l~v 313 (913)
.|... |. .+|+.-|
T Consensus 227 -----~i~vk--------------------k~-------~ltl~gi---------------------------------- 240 (397)
T KOG0327|consen 227 -----RILVK--------------------KD-------ELTLEGI---------------------------------- 240 (397)
T ss_pred -----EEEec--------------------ch-------hhhhhhe----------------------------------
Confidence 11100 00 0111000
Q ss_pred EEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEeccCCcchhhH
Q 002515 314 IEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAARE 393 (913)
Q Consensus 314 v~IPt~~p~~R~d~~d~v~~t~~~k~~aii~ei~~~~~~grPVLI~t~Si~~SE~ls~~L~~~gi~~~vLnA~~k~~~~E 393 (913)
..+|+ ...+.+|+.-+++... .-+..+|||++.+....+...|.++|.....+|+...+.+|+
T Consensus 241 kq~~i-------------~v~k~~k~~~l~dl~~----~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~ 303 (397)
T KOG0327|consen 241 KQFYI-------------NVEKEEKLDTLCDLYR----RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERD 303 (397)
T ss_pred eeeee-------------eccccccccHHHHHHH----hhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhh
Confidence 00111 1223336555554443 445679999999999999999999999999999987666776
Q ss_pred HHHHH-hcCCCccEEEEcCCCCCCccee
Q 002515 394 AETVA-QAGRKYAITISTNMAGRGTDII 420 (913)
Q Consensus 394 a~Iia-~AG~~G~VTIATnmAGRGTDIk 420 (913)
-.... +.| .++|.|.|..+.||.||.
T Consensus 304 ~~~~ef~~g-ssrvlIttdl~argidv~ 330 (397)
T KOG0327|consen 304 TLMREFRSG-SSRVLITTDLLARGIDVQ 330 (397)
T ss_pred HHHHHhhcC-CceEEeeccccccccchh
Confidence 55554 555 779999999999999994
No 91
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.49 E-value=8.9e-12 Score=151.11 Aligned_cols=116 Identities=21% Similarity=0.208 Sum_probs=90.5
Q ss_pred CchhHHHHHHHHhcC-----CeEEecCCCchHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEE
Q 002515 3 HFDVQIIGGAVLHDG-----SIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLI 77 (913)
Q Consensus 3 p~dvQl~g~l~L~~G-----~IaEm~TGEGKTLva~lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLsv~~i 77 (913)
+++.|.-+.-.+.+| .++.+.||+|||.+++.++.-....|++|.|++|+..||.+-.+.+.. .||.+++.+
T Consensus 145 Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~---~fg~~v~~~ 221 (679)
T PRK05580 145 LNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRA---RFGAPVAVL 221 (679)
T ss_pred CCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHH---HhCCCEEEE
Confidence 567787666666553 389999999999999877653334588999999999999998887775 458999999
Q ss_pred cCCCCHHHHHhcc------CCCeEEECCCcchhhHHHHhhccchhhhhccCCCCceEEEeecchhhh
Q 002515 78 QRGMIPEERRSNY------RCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (913)
Q Consensus 78 ~~~~~~~~r~~aY------~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiL 138 (913)
.+++++.+|...+ .++|++||.+.+ | .-.+ .+..+||||+|...
T Consensus 222 ~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal-~-------------~p~~---~l~liVvDEeh~~s 271 (679)
T PRK05580 222 HSGLSDGERLDEWRKAKRGEAKVVIGARSAL-F-------------LPFK---NLGLIIVDEEHDSS 271 (679)
T ss_pred ECCCCHHHHHHHHHHHHcCCCCEEEeccHHh-c-------------cccc---CCCEEEEECCCccc
Confidence 9999988876554 469999998764 1 1123 78999999999754
No 92
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.44 E-value=1.6e-11 Score=144.24 Aligned_cols=100 Identities=23% Similarity=0.255 Sum_probs=76.8
Q ss_pred EecCCCchHHHHHHHHHHHHH-cCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHHhcc------CCC
Q 002515 21 EMKTGEGKTLVSTLAAYLNAL-TGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNY------RCD 93 (913)
Q Consensus 21 Em~TGEGKTLva~lpa~l~AL-~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLsv~~i~~~~~~~~r~~aY------~~D 93 (913)
.-.||+|||+++.-.+. .++ .|++|.|++|...|+.+-++.+.. .||..+.+..+++++.+|...+ .++
T Consensus 3 ~g~TGsGKT~v~l~~i~-~~l~~g~~vLvlvP~i~L~~Q~~~~l~~---~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~ 78 (505)
T TIGR00595 3 FGVTGSGKTEVYLQAIE-KVLALGKSVLVLVPEIALTPQMIQRFKY---RFGSQVAVLHSGLSDSEKLQAWRKVKNGEIL 78 (505)
T ss_pred cCCCCCCHHHHHHHHHH-HHHHcCCeEEEEeCcHHHHHHHHHHHHH---HhCCcEEEEECCCCHHHHHHHHHHHHcCCCC
Confidence 44799999999865443 444 588999999999999988877765 4588999999999888876554 469
Q ss_pred eEEECCCcchhhHHHHhhccchhhhhccCCCCceEEEeecchhhhhcc
Q 002515 94 ITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDE 141 (913)
Q Consensus 94 I~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDe 141 (913)
|+.||.+.+ | . -.. .+..+||||+|.....+
T Consensus 79 IVVGTrsal-f-------~------p~~---~l~lIIVDEeh~~sykq 109 (505)
T TIGR00595 79 VVIGTRSAL-F-------L------PFK---NLGLIIVDEEHDSSYKQ 109 (505)
T ss_pred EEECChHHH-c-------C------ccc---CCCEEEEECCCcccccc
Confidence 999998754 1 0 123 78999999999865433
No 93
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.39 E-value=1.6e-11 Score=155.09 Aligned_cols=82 Identities=15% Similarity=0.157 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHHh-cCCcEEEEecchhhHHHHHHHHHHCCCC---eEEeccCCcchhhHHHHHHhcCCCccEEEEcCC
Q 002515 337 GKWEYARQEVESMFR-LGRPVLVGSTSVENSEYLSDLLKQQGIP---HNVLNARPKYAAREAETVAQAGRKYAITISTNM 412 (913)
Q Consensus 337 ~k~~aii~ei~~~~~-~grPVLI~t~Si~~SE~ls~~L~~~gi~---~~vLnA~~k~~~~Ea~Iia~AG~~G~VTIATnm 412 (913)
++..++++.+.+.++ ....||||+++..+.+.+++.|.+.+.+ +-.|++.....+++ .+.. .+....|.||||+
T Consensus 262 ~~~~~i~~~I~~l~~~~~GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~-~vf~-~~~~rkIVLATNI 339 (1283)
T TIGR01967 262 DQLEAILDAVDELFAEGPGDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQ-RVFQ-PHSGRRIVLATNV 339 (1283)
T ss_pred hHHHHHHHHHHHHHhhCCCCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHH-HHhC-CCCCceEEEeccH
Confidence 355666666655443 3468999999999999999999987654 45678864333333 2333 3323589999999
Q ss_pred CCCCccee
Q 002515 413 AGRGTDII 420 (913)
Q Consensus 413 AGRGTDIk 420 (913)
|.||+||.
T Consensus 340 AEtSLTIp 347 (1283)
T TIGR01967 340 AETSLTVP 347 (1283)
T ss_pred HHhccccC
Confidence 99999994
No 94
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.37 E-value=2.6e-11 Score=148.01 Aligned_cols=113 Identities=25% Similarity=0.333 Sum_probs=89.7
Q ss_pred eEEecCCCchHHHHHHHHHHHHHc--CCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHHhccCCCeEE
Q 002515 19 IAEMKTGEGKTLVSTLAAYLNALT--GEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNYRCDITY 96 (913)
Q Consensus 19 IaEm~TGEGKTLva~lpa~l~AL~--G~~VhVvT~NdyLA~RDae~~~~~y~~LGLsv~~i~~~~~~~~r~~aY~~DI~Y 96 (913)
|+.+.||+|||++|.|+++ +.|. |.+|.-|+|...||..-++++. =++.+|++|+..+++++... .....+||++
T Consensus 51 li~aPTgsGKTlIA~lai~-~~l~~~~~k~vYivPlkALa~Ek~~~~~-~~~~~GirV~~~TgD~~~~~-~~l~~~~ViV 127 (766)
T COG1204 51 LISAPTGSGKTLIALLAIL-STLLEGGGKVVYIVPLKALAEEKYEEFS-RLEELGIRVGISTGDYDLDD-ERLARYDVIV 127 (766)
T ss_pred EEEcCCCCchHHHHHHHHH-HHHHhcCCcEEEEeChHHHHHHHHHHhh-hHHhcCCEEEEecCCcccch-hhhccCCEEE
Confidence 9999999999999999997 5555 4689999999999999999999 88999999999999876432 4567899999
Q ss_pred ECCCcchhhHHHHhhccchhhhhccCCCCceEEEeecchhhhhccCCCc
Q 002515 97 TNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNP 145 (913)
Q Consensus 97 gT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~tP 145 (913)
+|+.- ||-|..+.. . ... ..+.+||||+|-+- |+-|-|
T Consensus 128 tT~EK--~Dsl~R~~~----~-~~~---~V~lvViDEiH~l~-d~~RG~ 165 (766)
T COG1204 128 TTPEK--LDSLTRKRP----S-WIE---EVDLVVIDEIHLLG-DRTRGP 165 (766)
T ss_pred EchHH--hhHhhhcCc----c-hhh---cccEEEEeeeeecC-CcccCc
Confidence 99987 454433221 1 334 78999999999764 543444
No 95
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.32 E-value=1.9e-11 Score=141.55 Aligned_cols=119 Identities=22% Similarity=0.329 Sum_probs=82.2
Q ss_pred CCCchhHHHHHHHHh---cCC-eEEecCCCchHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCe--E
Q 002515 1 MRHFDVQIIGGAVLH---DGS-IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLS--V 74 (913)
Q Consensus 1 ~rp~dvQl~g~l~L~---~G~-IaEm~TGEGKTLva~lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLs--v 74 (913)
+|||-.|.+-.+.-+ .++ ++.+.||.|||++++-.+. ..+..|.||+||..|..| |...++.+++.. +
T Consensus 37 lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~---~~~~~~Lvlv~~~~L~~Q---w~~~~~~~~~~~~~~ 110 (442)
T COG1061 37 LRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIA---ELKRSTLVLVPTKELLDQ---WAEALKKFLLLNDEI 110 (442)
T ss_pred CcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHH---HhcCCEEEEECcHHHHHH---HHHHHHHhcCCcccc
Confidence 466666666666654 444 9999999999999887775 344559999999999985 557788888885 5
Q ss_pred EEEcCCCCHHHHHhccCCCeEEECCCcchhhHHHHhhccchhhhhccCCCCceEEEeecchhhhhc
Q 002515 75 GLIQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLID 140 (913)
Q Consensus 75 ~~i~~~~~~~~r~~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiD 140 (913)
|.+.++.. .... .+|+|+|-..+... .++. ....+ .+..+|+||||.+..+
T Consensus 111 g~~~~~~~----~~~~-~~i~vat~qtl~~~---~~l~----~~~~~---~~~liI~DE~Hh~~a~ 161 (442)
T COG1061 111 GIYGGGEK----ELEP-AKVTVATVQTLARR---QLLD----EFLGN---EFGLIIFDEVHHLPAP 161 (442)
T ss_pred ceecCcee----ccCC-CcEEEEEhHHHhhh---hhhh----hhccc---ccCEEEEEccccCCcH
Confidence 55544321 1111 67999998765321 1121 12223 7999999999997644
No 96
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.28 E-value=8.8e-11 Score=141.76 Aligned_cols=126 Identities=18% Similarity=0.196 Sum_probs=94.2
Q ss_pred hHHHHHHHHh---cCCeEEecCCCchHHHHHHHHHHHHHc-----------CCcEEEEecCHHHHHHHHHHHHHHhhhcC
Q 002515 6 VQIIGGAVLH---DGSIAEMKTGEGKTLVSTLAAYLNALT-----------GEGVHVVTVNDYLAQRDAEWMERVHRFLG 71 (913)
Q Consensus 6 vQl~g~l~L~---~G~IaEm~TGEGKTLva~lpa~l~AL~-----------G~~VhVvT~NdyLA~RDae~~~~~y~~LG 71 (913)
+|-.+-+.-. .+.|+...||.|||-+|.|++. +.+. +-++-=|.|...||.--.+.+.+=+..||
T Consensus 114 iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~IL-r~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~kkl~~~g 192 (1230)
T KOG0952|consen 114 IQSEVFPVAYKSNENMLICAPTGSGKTVLAELCIL-RTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFSKKLAPLG 192 (1230)
T ss_pred HHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHH-HHHHhhccccccccCCceEEEEechHHHHHHHHHHHhhhccccc
Confidence 4555555443 3559999999999999999885 7776 23677789999999999999999999999
Q ss_pred CeEEEEcCCCCHHHHHhccCCCeEEECCCcchhhHHHHhhccchhhhhccCCCCceEEEeecchhhhhcc
Q 002515 72 LSVGLIQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDE 141 (913)
Q Consensus 72 Lsv~~i~~~~~~~~r~~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDe 141 (913)
++|.-.+|++.- -+.++-.|||+.+||.- ||.+-..-... ..... ....+||||||- |-|+
T Consensus 193 i~v~ELTGD~ql-~~tei~~tqiiVTTPEK--wDvvTRk~~~d--~~l~~---~V~LviIDEVHl-Lhd~ 253 (1230)
T KOG0952|consen 193 ISVRELTGDTQL-TKTEIADTQIIVTTPEK--WDVVTRKSVGD--SALFS---LVRLVIIDEVHL-LHDD 253 (1230)
T ss_pred ceEEEecCcchh-hHHHHHhcCEEEecccc--eeeeeeeeccc--hhhhh---heeeEEeeeehh-hcCc
Confidence 999999998753 23347889999999987 56442221111 12333 678999999994 5455
No 97
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.27 E-value=3.8e-11 Score=123.08 Aligned_cols=127 Identities=21% Similarity=0.257 Sum_probs=103.3
Q ss_pred CCchhHHHHHHHHhcCC--eEEecCCCchHHHHHHHHHHHHHc-----CCcEEEEecCHHHHHHHHHHHHHHhhhcCCeE
Q 002515 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALT-----GEGVHVVTVNDYLAQRDAEWMERVHRFLGLSV 74 (913)
Q Consensus 2 rp~dvQl~g~l~L~~G~--IaEm~TGEGKTLva~lpa~l~AL~-----G~~VhVvT~NdyLA~RDae~~~~~y~~LGLsv 74 (913)
.|++.|..+...+++|+ ++.+.||.|||+++++|+.-.... |..|.|++|+..|+.+-++.+..+....++.+
T Consensus 21 ~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~ 100 (203)
T cd00268 21 KPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELALQIAEVARKLGKHTNLKV 100 (203)
T ss_pred CCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHHHHHHHHHHHHHHhccCCceE
Confidence 48899999999998877 999999999999999998644333 33689999999999999999999988889999
Q ss_pred EEEcCCCCHHHHHhcc--CCCeEEECCCcchhhHHHHhhccchhhhhccCCCCceEEEeecchhhh
Q 002515 75 GLIQRGMIPEERRSNY--RCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (913)
Q Consensus 75 ~~i~~~~~~~~r~~aY--~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiL 138 (913)
.+..++.+...+...| +++|+++|+..+ .+++..+ . ...+ .+.++||||+|.+.
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l-~~~l~~~----~--~~~~---~l~~lIvDE~h~~~ 156 (203)
T cd00268 101 VVIYGGTSIDKQIRKLKRGPHIVVATPGRL-LDLLERG----K--LDLS---KVKYLVLDEADRML 156 (203)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEEChHHH-HHHHHcC----C--CChh---hCCEEEEeChHHhh
Confidence 9999888876666666 789999999876 3444321 1 2234 78999999999986
No 98
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.24 E-value=4.4e-11 Score=126.03 Aligned_cols=125 Identities=22% Similarity=0.264 Sum_probs=94.9
Q ss_pred CchhHHHHHHHHhcCC--eEEecCCCchHHHHHHHHHHHHHc---CC-cEEEEecCHHHHHHHHHHHHHHhhhc-CCeEE
Q 002515 3 HFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALT---GE-GVHVVTVNDYLAQRDAEWMERVHRFL-GLSVG 75 (913)
Q Consensus 3 p~dvQl~g~l~L~~G~--IaEm~TGEGKTLva~lpa~l~AL~---G~-~VhVvT~NdyLA~RDae~~~~~y~~L-GLsv~ 75 (913)
|-.||--+++--.-|. +.|.+.|-|||.+|+|+.. .-|. |. .|.|+|.+++||-+...++..|-+++ +++|+
T Consensus 65 psevqhecipqailgmdvlcqaksgmgktavfvl~tl-qqiepv~g~vsvlvmchtrelafqi~~ey~rfskymP~vkva 143 (387)
T KOG0329|consen 65 PSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATL-QQIEPVDGQVSVLVMCHTRELAFQISKEYERFSKYMPSVKVS 143 (387)
T ss_pred chHhhhhhhhHHhhcchhheecccCCCceeeeehhhh-hhcCCCCCeEEEEEEeccHHHHHHHHHHHHHHHhhCCCceEE
Confidence 6788988888554555 8999999999999999885 4443 42 67899999999999999999999988 79999
Q ss_pred EEcCCCCHHHHHhc--cCCCeEEECCCcchhhHHHHhhccchhhhhccCCCCceEEEeecchhhh
Q 002515 76 LIQRGMIPEERRSN--YRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (913)
Q Consensus 76 ~i~~~~~~~~r~~a--Y~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiL 138 (913)
+..||++...-.+. --.+|+.|||+++- ...|.. ...+. .....++||+|.||
T Consensus 144 VFfGG~~Ikkdee~lk~~PhivVgTPGril-ALvr~k------~l~lk---~vkhFvlDEcdkml 198 (387)
T KOG0329|consen 144 VFFGGLFIKKDEELLKNCPHIVVGTPGRIL-ALVRNR------SLNLK---NVKHFVLDECDKML 198 (387)
T ss_pred EEEcceeccccHHHHhCCCeEEEcCcHHHH-HHHHhc------cCchh---hcceeehhhHHHHH
Confidence 99999874322221 13489999999862 122221 22334 67788999999999
No 99
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.22 E-value=1.2e-10 Score=115.13 Aligned_cols=127 Identities=20% Similarity=0.259 Sum_probs=99.1
Q ss_pred chhHHHHHHHHhcCC--eEEecCCCchHHHHHHHHHHHHHcCC--cEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcC
Q 002515 4 FDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALTGE--GVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQR 79 (913)
Q Consensus 4 ~dvQl~g~l~L~~G~--IaEm~TGEGKTLva~lpa~l~AL~G~--~VhVvT~NdyLA~RDae~~~~~y~~LGLsv~~i~~ 79 (913)
+|.|.-+...+.+|+ ++.+.||.|||+++.+|++-....++ .+.+++|+.+|+.+-++++..++...++++..+.+
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~ 80 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEGKDARVLIIVPTRALAEQQFERLRKFFSNTNVRVVLLHG 80 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTTSSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEEEST
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccCCCceEEEEeecccccccccccccccccccccccccccc
Confidence 477888888777777 99999999999999999975555655 89999999999999999999999999999999988
Q ss_pred CCCHH-HH--HhccCCCeEEECCCcchhhHHHHhhccchhhhhccCCCCceEEEeecchhhhhc
Q 002515 80 GMIPE-ER--RSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLID 140 (913)
Q Consensus 80 ~~~~~-~r--~~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiD 140 (913)
+.+.. .. .....+||+++|+..| .+.+... ..... .++++|+||+|.+.-+
T Consensus 81 ~~~~~~~~~~~~~~~~~ilv~T~~~l-----~~~~~~~--~~~~~---~~~~iViDE~h~l~~~ 134 (169)
T PF00270_consen 81 GQSISEDQREVLSNQADILVTTPEQL-----LDLISNG--KINIS---RLSLIVIDEAHHLSDE 134 (169)
T ss_dssp TSCHHHHHHHHHHTTSSEEEEEHHHH-----HHHHHTT--SSTGT---TESEEEEETHHHHHHT
T ss_pred cccccccccccccccccccccCcchh-----hcccccc--ccccc---cceeeccCcccccccc
Confidence 87743 22 2234699999999775 3333321 11123 5899999999998743
No 100
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.22 E-value=1.5e-09 Score=135.11 Aligned_cols=134 Identities=21% Similarity=0.193 Sum_probs=82.8
Q ss_pred hhHHhhcCcccccCCCcccH--HHHHHHHhCCC---eEEe-CCCCCc---cc----ccCCCeEEeChhHHHHHHHHHHHH
Q 002515 282 QSLFKLYPKLSGMTGTAKTE--EKEFLKMFQMP---VIEV-PTNLPN---IR----VDLPIQSFATARGKWEYARQEVES 348 (913)
Q Consensus 282 q~~F~~Y~kL~GmTGTa~te--~~Ef~~iY~l~---vv~I-Pt~~p~---~R----~d~~d~v~~t~~~k~~aii~ei~~ 348 (913)
+.+|..+.....+|||+... ..-|.+..|++ +..+ |+-.+. .+ .|.|..-..+.++-..++++.|.+
T Consensus 589 ~~~~~~~~~~il~SATL~~~~~~~~~~~~lGl~~~~~~~~~~spf~~~~~~~l~v~~d~~~~~~~~~~~~~~~ia~~i~~ 668 (850)
T TIGR01407 589 KRLLPKFKSLIFTSATLKFSHSFESFPQLLGLTDVHFNTIEPTPLNYAENQRVLIPTDAPAIQNKSLEEYAQEIASYIIE 668 (850)
T ss_pred HHHhccCCeEEEEecccccCCChHHHHHhcCCCccccceecCCCCCHHHcCEEEecCCCCCCCCCChHHHHHHHHHHHHH
Confidence 45666777888888888642 33455667764 1223 443331 11 122221123444555677777766
Q ss_pred HHh-cCCcEEEEecchhhHHHHHHHHHHC----CCCeEEeccCCcchhhHHHHHH--hcCCCccEEEEcCCCCCCccee
Q 002515 349 MFR-LGRPVLVGSTSVENSEYLSDLLKQQ----GIPHNVLNARPKYAAREAETVA--QAGRKYAITISTNMAGRGTDII 420 (913)
Q Consensus 349 ~~~-~grPVLI~t~Si~~SE~ls~~L~~~----gi~~~vLnA~~k~~~~Ea~Iia--~AG~~G~VTIATnmAGRGTDIk 420 (913)
... .+.++||+|+|....+.++..|... +++ ++.-. .+..++. ++. +.| .++|.++|+-+.+|+|+.
T Consensus 669 l~~~~~g~~LVlftS~~~l~~v~~~L~~~~~~~~~~--~l~q~-~~~~r~~-ll~~F~~~-~~~iLlgt~sf~EGVD~~ 742 (850)
T TIGR01407 669 ITAITSPKILVLFTSYEMLHMVYDMLNELPEFEGYE--VLAQG-INGSRAK-IKKRFNNG-EKAILLGTSSFWEGVDFP 742 (850)
T ss_pred HHHhcCCCEEEEeCCHHHHHHHHHHHhhhccccCce--EEecC-CCccHHH-HHHHHHhC-CCeEEEEcceeecccccC
Confidence 543 4458999999999999999999762 333 33332 1223443 343 455 678999999999999998
No 101
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.13 E-value=1.6e-08 Score=128.24 Aligned_cols=130 Identities=14% Similarity=0.024 Sum_probs=74.7
Q ss_pred CchhHHHHHHHH----hcC---CeEEecCCCchHHHHHHHHHHH--HHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCe
Q 002515 3 HFDVQIIGGAVL----HDG---SIAEMKTGEGKTLVSTLAAYLN--ALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLS 73 (913)
Q Consensus 3 p~dvQl~g~l~L----~~G---~IaEm~TGEGKTLva~lpa~l~--AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLs 73 (913)
+.+-|.-++-.+ .+| -++.|.||+|||++++..++.. +-..++|.++++...|..|-.+.|..+.-.-+.+
T Consensus 414 lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li~~L~~~~~~~rVLfLvDR~~L~~Qa~~~F~~~~~~~~~~ 493 (1123)
T PRK11448 414 LRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALMYRLLKAKRFRRILFLVDRSALGEQAEDAFKDTKIEGDQT 493 (1123)
T ss_pred CCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHHHHhcCccCeEEEEecHHHHHHHHHHHHHhcccccccc
Confidence 345566555433 233 3999999999999866555422 1224689999999999999999888763222222
Q ss_pred EEEEcCCCCHHHHHhccCCCeEEECCCcchhhHHHHhhccchhhhhccCCCCceEEEeecchhh
Q 002515 74 VGLIQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV 137 (913)
Q Consensus 74 v~~i~~~~~~~~r~~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsi 137 (913)
++.+.+...-.++...-...|+++|.-.|.-..+. ..+......+..++++||||||+.
T Consensus 494 ~~~i~~i~~L~~~~~~~~~~I~iaTiQtl~~~~~~-----~~~~~~~~~~~~fdlIIiDEaHRs 552 (1123)
T PRK11448 494 FASIYDIKGLEDKFPEDETKVHVATVQGMVKRILY-----SDDPMDKPPVDQYDCIIVDEAHRG 552 (1123)
T ss_pred hhhhhchhhhhhhcccCCCCEEEEEHHHHHHhhhc-----cccccccCCCCcccEEEEECCCCC
Confidence 22121111111122233578999998765321111 000000011227899999999974
No 102
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.13 E-value=5.3e-10 Score=105.36 Aligned_cols=87 Identities=23% Similarity=0.355 Sum_probs=67.5
Q ss_pred EeChhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEeccCCcchhhHHHHHH--hcCCCccEEEE
Q 002515 332 FATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVA--QAGRKYAITIS 409 (913)
Q Consensus 332 ~~t~~~k~~aii~ei~~~~~~grPVLI~t~Si~~SE~ls~~L~~~gi~~~vLnA~~k~~~~Ea~Iia--~AG~~G~VTIA 409 (913)
+.+.+.|...+.+.+....+.+.++||||++...++.+.+.|++.+++...+++.....++. .++. +.| ...|.|+
T Consensus 7 ~~~~~~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~f~~~-~~~ili~ 84 (131)
T cd00079 7 LPVEDEKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEERE-EVLKDFREG-EIVVLVA 84 (131)
T ss_pred EECCHHHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHH-HHHHHHHcC-CCcEEEE
Confidence 34444788888888887766789999999999999999999999999999999863322232 3333 333 2469999
Q ss_pred cCCCCCCccee
Q 002515 410 TNMAGRGTDII 420 (913)
Q Consensus 410 TnmAGRGTDIk 420 (913)
|+++|+|+|+.
T Consensus 85 t~~~~~G~d~~ 95 (131)
T cd00079 85 TDVIARGIDLP 95 (131)
T ss_pred cChhhcCcChh
Confidence 99999999983
No 103
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.02 E-value=3.7e-08 Score=123.33 Aligned_cols=87 Identities=18% Similarity=0.165 Sum_probs=68.1
Q ss_pred ChhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEeccCCcchhhHHHHHH-hcCCCc--cEEEEc
Q 002515 334 TARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVA-QAGRKY--AITIST 410 (913)
Q Consensus 334 t~~~k~~aii~ei~~~~~~grPVLI~t~Si~~SE~ls~~L~~~gi~~~vLnA~~k~~~~Ea~Iia-~AG~~G--~VTIAT 410 (913)
....|...+...+......|..|||||......+.|...|...|+++..+++.....+|++.|-. ++..++ .+.++|
T Consensus 468 e~SgKl~lLdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLST 547 (1033)
T PLN03142 468 ENSGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLST 547 (1033)
T ss_pred hhhhHHHHHHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEec
Confidence 34567777666666777889999999999999999999999999999999997655566655554 333232 568999
Q ss_pred CCCCCCccee
Q 002515 411 NMAGRGTDII 420 (913)
Q Consensus 411 nmAGRGTDIk 420 (913)
..+|-|++..
T Consensus 548 rAGGlGINLt 557 (1033)
T PLN03142 548 RAGGLGINLA 557 (1033)
T ss_pred cccccCCchh
Confidence 9999999863
No 104
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.01 E-value=5.3e-09 Score=116.88 Aligned_cols=270 Identities=20% Similarity=0.205 Sum_probs=163.2
Q ss_pred chhHHHHHHHHhcCC---eEEecCCCchHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCC
Q 002515 4 FDVQIIGGAVLHDGS---IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRG 80 (913)
Q Consensus 4 ~dvQl~g~l~L~~G~---IaEm~TGEGKTLva~lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLsv~~i~~~ 80 (913)
.|.|--+..+..+|+ .+.|.||.||||.+-||+. +.|.=..|+.|==.|-+.... -..-|.+.|....+.
T Consensus 22 s~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL---~~~gITIV~SPLiALIkDQiD----HL~~LKVp~~SLNSK 94 (641)
T KOG0352|consen 22 SRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPAL---VHGGITIVISPLIALIKDQID----HLKRLKVPCESLNSK 94 (641)
T ss_pred ChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHH---HhCCeEEEehHHHHHHHHHHH----HHHhcCCchhHhcch
Confidence 477888999888887 8999999999999999997 444423344443344343322 233566777778888
Q ss_pred CCHHHHHhcc--------CCCeEEECCCcchhhHHHHhhccchhhhhccCCCCceEEEeecchhhhhccCCCceeccCCC
Q 002515 81 MIPEERRSNY--------RCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEA 152 (913)
Q Consensus 81 ~~~~~r~~aY--------~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~tPLiiSg~~ 152 (913)
|+.+||...- +--|.|.||..-+-|...+.+.. ++.|+ .+.|++|||||.+-
T Consensus 95 lSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~----L~~r~--~L~Y~vVDEAHCVS-------------- 154 (641)
T KOG0352|consen 95 LSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNG----LANRD--VLRYIVVDEAHCVS-------------- 154 (641)
T ss_pred hhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHH----Hhhhc--eeeeEEechhhhHh--------------
Confidence 8888886433 24799999987766665555532 23331 67899999999973
Q ss_pred CCCccchHHHHHHHHHhccCCCeEEeCCCCeeeccHhhHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHhhccCcceEE
Q 002515 153 SKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIV 232 (913)
Q Consensus 153 ~~~~~~y~~~~~~v~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~l~~~i~~Al~A~~l~~~d~dYiV 232 (913)
+. +-||..| +|+ +. +|+...
T Consensus 155 ---------------QW--GHDFRPD------YL~------------LG---------------~LRS~~---------- 174 (641)
T KOG0352|consen 155 ---------------QW--GHDFRPD------YLT------------LG---------------SLRSVC---------- 174 (641)
T ss_pred ---------------hh--ccccCcc------hhh------------hh---------------hHHhhC----------
Confidence 11 2244333 111 00 111100
Q ss_pred ECCeEEEEeCCCCccccCcccChhhhHHHHhHhCCcccCCceeeeeeeehhHHhhcCcccccCCCcccHHHH--HHHH-h
Q 002515 233 RNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKE--FLKM-F 309 (913)
Q Consensus 233 ~dg~V~iVD~~TGR~~~gr~ws~GLHQaieaKEgv~i~~e~~t~a~IT~q~~F~~Y~kL~GmTGTa~te~~E--f~~i-Y 309 (913)
+ ++ -...+|+||..+-+| |.+. .
T Consensus 175 ---------------------~-----------~v----------------------pwvALTATA~~~VqEDi~~qL~L 200 (641)
T KOG0352|consen 175 ---------------------P-----------GV----------------------PWVALTATANAKVQEDIAFQLKL 200 (641)
T ss_pred ---------------------C-----------CC----------------------ceEEeecccChhHHHHHHHHHhh
Confidence 0 01 134678888765443 2221 2
Q ss_pred CCCe--EEeCCCCCcccccCCCeEEeCh-hHHHHHHHHHHHHHHh---------cC--CcEEEEecchhhHHHHHHHHHH
Q 002515 310 QMPV--IEVPTNLPNIRVDLPIQSFATA-RGKWEYARQEVESMFR---------LG--RPVLVGSTSVENSEYLSDLLKQ 375 (913)
Q Consensus 310 ~l~v--v~IPt~~p~~R~d~~d~v~~t~-~~k~~aii~ei~~~~~---------~g--rPVLI~t~Si~~SE~ls~~L~~ 375 (913)
.-+| +.-|+++....-| .+|.+- .+-+..+.+-+..+.. ++ -.-+|.|++-+++|.++-.|..
T Consensus 201 ~~PVAiFkTP~FR~NLFYD---~~~K~~I~D~~~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~ 277 (641)
T KOG0352|consen 201 RNPVAIFKTPTFRDNLFYD---NHMKSFITDCLTVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEI 277 (641)
T ss_pred cCcHHhccCcchhhhhhHH---HHHHHHhhhHhHhHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhh
Confidence 3344 3446655443322 112211 1122233333332211 11 2358999999999999999999
Q ss_pred CCCCeEEeccCCcchhhHHHHHHhcCC--CccEEEEcCCCCCCcce
Q 002515 376 QGIPHNVLNARPKYAAREAETVAQAGR--KYAITISTNMAGRGTDI 419 (913)
Q Consensus 376 ~gi~~~vLnA~~k~~~~Ea~Iia~AG~--~G~VTIATnmAGRGTDI 419 (913)
+||+....||+.| ..|...+.++=- .-.|++||+-.|-|+|=
T Consensus 278 ~Gi~A~AYHAGLK--~~ERTeVQe~WM~~~~PvI~AT~SFGMGVDK 321 (641)
T KOG0352|consen 278 AGIPAMAYHAGLK--KKERTEVQEKWMNNEIPVIAATVSFGMGVDK 321 (641)
T ss_pred cCcchHHHhcccc--cchhHHHHHHHhcCCCCEEEEEeccccccCC
Confidence 9999888888744 445555554422 34799999999999995
No 105
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.00 E-value=1.5e-08 Score=125.63 Aligned_cols=267 Identities=19% Similarity=0.225 Sum_probs=175.3
Q ss_pred hhHHHHHHHHhcCC--eEEecCCCchHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCC
Q 002515 5 DVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMI 82 (913)
Q Consensus 5 dvQl~g~l~L~~G~--IaEm~TGEGKTLva~lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLsv~~i~~~~~ 82 (913)
+.|.-++.+.+.|+ .+.|.||-||+|.+-+||+ |.+.-..||.|=..|=+.....+ ...||......++++
T Consensus 267 ~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~---l~~gitvVISPL~SLm~DQv~~L----~~~~I~a~~L~s~q~ 339 (941)
T KOG0351|consen 267 PNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPAL---LLGGVTVVISPLISLMQDQVTHL----SKKGIPACFLSSIQT 339 (941)
T ss_pred hhHHHHHHHHHcCCceEEEeecCCceeeEeecccc---ccCCceEEeccHHHHHHHHHHhh----hhcCcceeecccccc
Confidence 56777777888888 9999999999999999998 56666778888778877544443 567899999999999
Q ss_pred HHHHHhccC--------CCeEEECCCcchh-hHHHHhhccchhhhhccCCCCceEEEeecchhhhhccCCCceeccCCCC
Q 002515 83 PEERRSNYR--------CDITYTNNSELGF-DYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEAS 153 (913)
Q Consensus 83 ~~~r~~aY~--------~DI~YgT~~e~~f-DyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~tPLiiSg~~~ 153 (913)
..+|...|+ .+|.|.|+.-+.- .-|...+. .+..| ..+..++|||||.+.
T Consensus 340 ~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~----~L~~~--~~lal~vIDEAHCVS--------------- 398 (941)
T KOG0351|consen 340 AAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLA----DLYAR--GLLALFVIDEAHCVS--------------- 398 (941)
T ss_pred HHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHH----hccCC--CeeEEEEecHHHHhh---------------
Confidence 988887774 4899999865420 01111111 11111 137889999999985
Q ss_pred CCccchHHHHHHHHHhccCCCeEEeCCCCeeeccHhhHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHhhccCcceEEE
Q 002515 154 KDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVR 233 (913)
Q Consensus 154 ~~~~~y~~~~~~v~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~l~~~i~~Al~A~~l~~~d~dYiV~ 233 (913)
-| +-||.-+ ++++.... .+.
T Consensus 399 ----qW------------gHdFRp~--------------------------------Yk~l~~l~-~~~----------- 418 (941)
T KOG0351|consen 399 ----QW------------GHDFRPS--------------------------------YKRLGLLR-IRF----------- 418 (941)
T ss_pred ----hh------------cccccHH--------------------------------HHHHHHHH-hhC-----------
Confidence 00 0112111 11111111 000
Q ss_pred CCeEEEEeCCCCccccCcccChhhhHHHHhHhCCcccCCceeeeeeeehhHHhhcCcccccCCCcccH-HHHHHHHhCC-
Q 002515 234 NGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTE-EKEFLKMFQM- 311 (913)
Q Consensus 234 dg~V~iVD~~TGR~~~gr~ws~GLHQaieaKEgv~i~~e~~t~a~IT~q~~F~~Y~kL~GmTGTa~te-~~Ef~~iY~l- 311 (913)
.++ -+.++|+||.+. .+...+--|+
T Consensus 419 -------------------------------~~v----------------------P~iALTATAT~~v~~DIi~~L~l~ 445 (941)
T KOG0351|consen 419 -------------------------------PGV----------------------PFIALTATATERVREDVIRSLGLR 445 (941)
T ss_pred -------------------------------CCC----------------------CeEEeehhccHHHHHHHHHHhCCC
Confidence 001 256899999653 3445555554
Q ss_pred --CeEEeCCCCCcccccCCCeEEeCh-hHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEeccCCc
Q 002515 312 --PVIEVPTNLPNIRVDLPIQSFATA-RGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPK 388 (913)
Q Consensus 312 --~vv~IPt~~p~~R~d~~d~v~~t~-~~k~~aii~ei~~~~~~grPVLI~t~Si~~SE~ls~~L~~~gi~~~vLnA~~k 388 (913)
.++.--.|+|... ..|-... ......+...+... ..+++.+|.|.+-.++|.++..|...|+.....||+..
T Consensus 446 ~~~~~~~sfnR~NL~----yeV~~k~~~~~~~~~~~~~~~~-~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~ 520 (941)
T KOG0351|consen 446 NPELFKSSFNRPNLK----YEVSPKTDKDALLDILEESKLR-HPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLP 520 (941)
T ss_pred CcceecccCCCCCce----EEEEeccCccchHHHHHHhhhc-CCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCC
Confidence 3444444555433 3333333 44445566666554 57899999999999999999999999999999999742
Q ss_pred chhhHHHHHH---hcCCCccEEEEcCCCCCCccee
Q 002515 389 YAAREAETVA---QAGRKYAITISTNMAGRGTDII 420 (913)
Q Consensus 389 ~~~~Ea~Iia---~AG~~G~VTIATnmAGRGTDIk 420 (913)
..+.+-|. ..|+ -.|.+||=+.|=|+|-+
T Consensus 521 --~~~R~~Vq~~w~~~~-~~VivATVAFGMGIdK~ 552 (941)
T KOG0351|consen 521 --PKERETVQKAWMSDK-IRVIVATVAFGMGIDKP 552 (941)
T ss_pred --HHHHHHHHHHHhcCC-CeEEEEEeeccCCCCCC
Confidence 33334344 4453 47999999999999974
No 106
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=98.92 E-value=9.3e-09 Score=95.91 Aligned_cols=112 Identities=24% Similarity=0.269 Sum_probs=85.5
Q ss_pred CCeEEecCCCchHHHHHHHHHHHHH--cCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHH--HHhccCC
Q 002515 17 GSIAEMKTGEGKTLVSTLAAYLNAL--TGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEE--RRSNYRC 92 (913)
Q Consensus 17 G~IaEm~TGEGKTLva~lpa~l~AL--~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLsv~~i~~~~~~~~--r~~aY~~ 92 (913)
+-++.+.||.|||.++..++..... .++++.|++||..|+.+-.+.+...+.. ++.+..+.+...... ......+
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~p~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 80 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLAPTRELANQVAERLKELFGE-GIKVGYLIGGTSIKQQEKLLSGKT 80 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHhcccCCCEEEEcCcHHHHHHHHHHHHHHhhC-CcEEEEEecCcchhHHHHHhcCCC
Confidence 4588999999999998888875444 4579999999999999999988888776 788888777655433 3346788
Q ss_pred CeEEECCCcchhhHHHHhhccchhhhhccCCCCceEEEeecchhhhh
Q 002515 93 DITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLI 139 (913)
Q Consensus 93 DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLi 139 (913)
+|+++|+..+........ ...+ .++++||||+|.+.-
T Consensus 81 ~i~i~t~~~~~~~~~~~~-------~~~~---~~~~iiiDE~h~~~~ 117 (144)
T cd00046 81 DIVVGTPGRLLDELERLK-------LSLK---KLDLLILDEAHRLLN 117 (144)
T ss_pred CEEEECcHHHHHHHHcCC-------cchh---cCCEEEEeCHHHHhh
Confidence 999999987643322221 2234 789999999999863
No 107
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=98.89 E-value=1.9e-07 Score=115.96 Aligned_cols=135 Identities=16% Similarity=0.182 Sum_probs=84.8
Q ss_pred hhHHhhcCcccccCCCccc--HHHHHHHHhCCCe---EEeCCCCCcccc-----cCCCeEEeChhHHHHHHHHHHHHHHh
Q 002515 282 QSLFKLYPKLSGMTGTAKT--EEKEFLKMFQMPV---IEVPTNLPNIRV-----DLPIQSFATARGKWEYARQEVESMFR 351 (913)
Q Consensus 282 q~~F~~Y~kL~GmTGTa~t--e~~Ef~~iY~l~v---v~IPt~~p~~R~-----d~~d~v~~t~~~k~~aii~ei~~~~~ 351 (913)
+.+|.....+..+|||+.. .-. |.+..|++. ..+|.+.+..+. |.|+.--.+.++...++++.|.....
T Consensus 567 ~~~~~~~~~~i~tSATL~v~~~f~-~~~~lGl~~~~~~~~~~~~~~~~~~~i~~~~p~~~~~~~~~~~~~~~~~i~~~~~ 645 (820)
T PRK07246 567 SQLLPETCKTYFVSATLQISPRVS-LADLLGFEEYLFHKIEKDKKQDQLVVVDQDMPLVTETSDEVYAEEIAKRLEELKQ 645 (820)
T ss_pred HHHHhcCCeEEEEecccccCCCCc-HHHHcCCCccceecCCCChHHccEEEeCCCCCCCCCCChHHHHHHHHHHHHHHHh
Confidence 6777777788888888852 222 777777742 223322221111 22221112344555678888876667
Q ss_pred cCCcEEEEecchhhHHHHHHHHHHCCCCeEEeccCCcchhhHHHHHH--hcCCCccEEEEcCCCCCCcceecC
Q 002515 352 LGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVA--QAGRKYAITISTNMAGRGTDIILG 422 (913)
Q Consensus 352 ~grPVLI~t~Si~~SE~ls~~L~~~gi~~~vLnA~~k~~~~Ea~Iia--~AG~~G~VTIATnmAGRGTDIkLg 422 (913)
.+.++||+++|-+.-+.++..|....+++ +.-+. +..+ ..+++ +.| .++|.++|.-.--|+|+.=|
T Consensus 646 ~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~--~~~~-~~l~~~F~~~-~~~vLlG~~sFwEGVD~p~~ 713 (820)
T PRK07246 646 LQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEK--NGTA-YNIKKRFDRG-EQQILLGLGSFWEGVDFVQA 713 (820)
T ss_pred cCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCC--CccH-HHHHHHHHcC-CCeEEEecchhhCCCCCCCC
Confidence 77899999999999999999997765554 22221 1122 23554 344 56899999999999999633
No 108
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=98.80 E-value=2e-07 Score=114.48 Aligned_cols=132 Identities=19% Similarity=0.092 Sum_probs=85.6
Q ss_pred ccccCCCcccHH-HHHHHHhCCCeEEeCCCCCcccccCCCeEEeChhHHH----HHHHHHHHHHHhcCCcEEEEecchhh
Q 002515 291 LSGMTGTAKTEE-KEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKW----EYARQEVESMFRLGRPVLVGSTSVEN 365 (913)
Q Consensus 291 L~GmTGTa~te~-~Ef~~iY~l~vv~IPt~~p~~R~d~~d~v~~t~~~k~----~aii~ei~~~~~~grPVLI~t~Si~~ 365 (913)
+.-||+|..+.- ++|.+.++-...+.++...+.-.+.+...-....... ......+....+.|.+|||+|+||..
T Consensus 373 ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kvlvI~NTV~~ 452 (733)
T COG1203 373 VLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKERVDVEDGPQEELIELISEEVKEGKKVLVIVNTVDR 452 (733)
T ss_pred EEEEecCCCHHHHHHHHHHHhcccceeccccccccccccccccccchhhhhhhhHhhhhcchhhhccCCcEEEEEecHHH
Confidence 456899998764 4456666665554444332222222221111111111 12455556667899999999999999
Q ss_pred HHHHHHHHHHCCCCeEEeccCCcc-h--hhHHHHHHh-cCCCccEEEEcCCCCCCcceecC
Q 002515 366 SEYLSDLLKQQGIPHNVLNARPKY-A--AREAETVAQ-AGRKYAITISTNMAGRGTDIILG 422 (913)
Q Consensus 366 SE~ls~~L~~~gi~~~vLnA~~k~-~--~~Ea~Iia~-AG~~G~VTIATnmAGRGTDIkLg 422 (913)
|..+...|+..+-+.-+||++-.. | +.|.++.+. +...+.|.|||...-=|.||..+
T Consensus 453 Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDidfd 513 (733)
T COG1203 453 AIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDIDFD 513 (733)
T ss_pred HHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEeccccC
Confidence 999999999998878899986322 2 223344443 55678999999999999999643
No 109
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=98.77 E-value=3.8e-07 Score=110.72 Aligned_cols=181 Identities=21% Similarity=0.260 Sum_probs=105.9
Q ss_pred ceEEECCeEEEEeCCCCccccCcccChhhhHHHHh--HhCCcccCCceeeeeeeehhHHhhcCcccccCCCcccHHHHHH
Q 002515 229 QYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEA--KEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFL 306 (913)
Q Consensus 229 dYiV~dg~V~iVD~~TGR~~~gr~ws~GLHQaiea--KEgv~i~~e~~t~a~IT~q~~F~~Y~kL~GmTGTa~te~~Ef~ 306 (913)
||+= ++-++++|+..--......|-.+.....+. ..|.-+.+. ...-..++..+.+.-.+..-+|.|.+.. ++.
T Consensus 327 DYlp-~~~lv~ide~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~-~~~~~~~~~e~~~~~~~~I~lSat~~~~--~~~ 402 (652)
T PRK05298 327 DYFP-DDFLLFIDESHVTVPQIGGMYNGDRSRKETLVEYGFRLPSA-LDNRPLKFEEFEAKVPQTIYVSATPGDY--ELE 402 (652)
T ss_pred hccC-CcceEEEechHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcc-ccccCcCHHHHHHhcCCEEEEEcCCCcc--chh
Confidence 5653 456778887543333333443333332211 124333211 0012346666666555555566654432 111
Q ss_pred HHhCCCeE-E--eCCCCCcccccCCCeEEeChhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEe
Q 002515 307 KMFQMPVI-E--VPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVL 383 (913)
Q Consensus 307 ~iY~l~vv-~--IPt~~p~~R~d~~d~v~~t~~~k~~aii~ei~~~~~~grPVLI~t~Si~~SE~ls~~L~~~gi~~~vL 383 (913)
..-+ +++ . -|+..+ + |..-......++..+++++.+..+.|..|||||.|...++.|++.|...|+++.++
T Consensus 403 ~~~~-~iv~~i~r~~~l~----~-p~~~~~~~~~q~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~ 476 (652)
T PRK05298 403 KSGG-VVVEQIIRPTGLL----D-PEIEVRPTKGQVDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYL 476 (652)
T ss_pred hccC-cchhhhhhccCCC----C-CceEEeeccccHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEE
Confidence 1000 111 1 122111 1 11112233456788999999888999999999999999999999999999999999
Q ss_pred ccCCcchhhHHHHHH-hcCCCccEEEEcCCCCCCccee
Q 002515 384 NARPKYAAREAETVA-QAGRKYAITISTNMAGRGTDII 420 (913)
Q Consensus 384 nA~~k~~~~Ea~Iia-~AG~~G~VTIATnmAGRGTDIk 420 (913)
|+...+.+|+..+.. +.| .-.|+|||++++||.|+.
T Consensus 477 h~~~~~~~R~~~l~~f~~g-~i~vlV~t~~L~rGfdlp 513 (652)
T PRK05298 477 HSDIDTLERVEIIRDLRLG-EFDVLVGINLLREGLDIP 513 (652)
T ss_pred ECCCCHHHHHHHHHHHHcC-CceEEEEeCHHhCCcccc
Confidence 986444444433333 456 357889999999999994
No 110
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=98.76 E-value=7.4e-08 Score=95.45 Aligned_cols=127 Identities=29% Similarity=0.253 Sum_probs=88.5
Q ss_pred CCchhHHHHHHHHhcC---CeEEecCCCchHHHHHHHHHHHHHcC--CcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEE
Q 002515 2 RHFDVQIIGGAVLHDG---SIAEMKTGEGKTLVSTLAAYLNALTG--EGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGL 76 (913)
Q Consensus 2 rp~dvQl~g~l~L~~G---~IaEm~TGEGKTLva~lpa~l~AL~G--~~VhVvT~NdyLA~RDae~~~~~y~~LGLsv~~ 76 (913)
.|++.|.-+.-.++++ .+..+.||.|||.+++.+++-....+ +.+.+++|+..++.+-...+...+.........
T Consensus 8 ~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (201)
T smart00487 8 PLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVPTRELAEQWAEELKKLGPSLGLKVVG 87 (201)
T ss_pred CCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccCCCcEEEEeCCHHHHHHHHHHHHHHhccCCeEEEE
Confidence 4778888888777654 49999999999999999987555555 789999999999998777777776655533344
Q ss_pred EcCCCC-HHHHH-hccCC-CeEEECCCcchhhHHHHhhccchhhhhccCCCCceEEEeecchhhh
Q 002515 77 IQRGMI-PEERR-SNYRC-DITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (913)
Q Consensus 77 i~~~~~-~~~r~-~aY~~-DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiL 138 (913)
+.++.. .+... ..-.+ +|+++|++.+ .+.+.... .... ++.++||||+|.+-
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~v~~~t~~~l-----~~~~~~~~--~~~~---~~~~iIiDE~h~~~ 142 (201)
T smart00487 88 LYGGDSKREQLRKLESGKTDILVTTPGRL-----LDLLENDL--LELS---NVDLVILDEAHRLL 142 (201)
T ss_pred EeCCcchHHHHHHHhcCCCCEEEeChHHH-----HHHHHcCC--cCHh---HCCEEEEECHHHHh
Confidence 444433 22222 22233 9999998754 33333221 2233 78899999999975
No 111
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=98.74 E-value=8e-07 Score=97.94 Aligned_cols=78 Identities=22% Similarity=0.297 Sum_probs=57.5
Q ss_pred HHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHC-CCCe-EEeccCCcchhhHHHHHHhcCCCccEEEEcCCCCCCcc
Q 002515 341 YARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQ-GIPH-NVLNARPKYAAREAETVAQAGRKYAITISTNMAGRGTD 418 (913)
Q Consensus 341 aii~ei~~~~~~grPVLI~t~Si~~SE~ls~~L~~~-gi~~-~vLnA~~k~~~~Ea~Iia~AG~~G~VTIATnmAGRGTD 418 (913)
++...+...+++|+|||||.++|+..|.+++.|+.. .-.+ ...++. ..+..|.----+-| .-.|.|+|-+.-||+-
T Consensus 293 kl~~~lekq~~~~~P~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~-d~~R~EkV~~fR~G-~~~lLiTTTILERGVT 370 (441)
T COG4098 293 KLKRWLEKQRKTGRPVLIFFPEIETMEQVAAALKKKLPKETIASVHSE-DQHRKEKVEAFRDG-KITLLITTTILERGVT 370 (441)
T ss_pred HHHHHHHHHHhcCCcEEEEecchHHHHHHHHHHHhhCCccceeeeecc-CccHHHHHHHHHcC-ceEEEEEeehhhcccc
Confidence 567778888899999999999999999999999553 2222 234443 34566533333667 4578899999999987
Q ss_pred ee
Q 002515 419 II 420 (913)
Q Consensus 419 Ik 420 (913)
+.
T Consensus 371 fp 372 (441)
T COG4098 371 FP 372 (441)
T ss_pred cc
Confidence 74
No 112
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=98.71 E-value=2.7e-06 Score=103.96 Aligned_cols=125 Identities=25% Similarity=0.341 Sum_probs=98.7
Q ss_pred CCchhHHHHHHHHhcCC--eEEecCCCchHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcC-CeEEE-E
Q 002515 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLG-LSVGL-I 77 (913)
Q Consensus 2 rp~dvQl~g~l~L~~G~--IaEm~TGEGKTLva~lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LG-Lsv~~-i 77 (913)
+|+..|=+=+-.+..|+ =+-+.||-|||..-++.+...|..|+.|.+|-|+.-|++|-++.+..|-+--| +.+-. .
T Consensus 82 ~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~sl~~a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~y 161 (1187)
T COG1110 82 RPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMSLYLAKKGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVY 161 (1187)
T ss_pred CchHHHHHHHHHHHcCCceEEEcCCCCchhHHHHHHHHHHHhcCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeee
Confidence 68888988888999999 45568999999865555555899999999999999999999999999987666 55544 4
Q ss_pred cCCCCHHHHHhcc------CCCeEEECCCcchhhHHHHhhccchhhhhccCCCCceEEEeecchhhh
Q 002515 78 QRGMIPEERRSNY------RCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (913)
Q Consensus 78 ~~~~~~~~r~~aY------~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiL 138 (913)
.+.++.++|+++- +.||..+|+. ||..|+. .+..- +|+|++||.||++|
T Consensus 162 h~~l~~~ekee~le~i~~gdfdIlitTs~-----FL~k~~e----~L~~~---kFdfifVDDVDA~L 216 (1187)
T COG1110 162 HSALPTKEKEEALERIESGDFDILITTSQ-----FLSKRFE----ELSKL---KFDFIFVDDVDAIL 216 (1187)
T ss_pred ccccchHHHHHHHHHHhcCCccEEEEeHH-----HHHhhHH----Hhccc---CCCEEEEccHHHHH
Confidence 4567777776544 3699999985 5666653 22223 79999999999998
No 113
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=98.70 E-value=2.5e-07 Score=112.07 Aligned_cols=180 Identities=17% Similarity=0.227 Sum_probs=113.3
Q ss_pred ceEEECCeEEEEeCCCCccccCcccChhhhHHHHh--HhCCcccCCceeeeeeeehhHHhhcCcccccCCCcccHHHHHH
Q 002515 229 QYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEA--KEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFL 306 (913)
Q Consensus 229 dYiV~dg~V~iVD~~TGR~~~gr~ws~GLHQaiea--KEgv~i~~e~~t~a~IT~q~~F~~Y~kL~GmTGTa~te~~Ef~ 306 (913)
||. .++-+++||+..--...-+.+-.|.+...+. ..|..+.+. ..--..++..|.+.-....-+|.|-+... ..
T Consensus 324 DY~-p~d~lv~iDE~~~~~~q~~~m~~~~~~~~~~lve~g~~lp~~-~~n~~l~~~e~~~~~~q~I~lSaTp~~~e--~~ 399 (655)
T TIGR00631 324 DYF-PDDFLLVIDESHVTLPQIGGMYNGDRSRKQTLVEYGFRLPSA-LDNRPLKFEEFEERINQVVYVSATPGPYE--LE 399 (655)
T ss_pred HhC-CCccEEEEecHHHHHHHHHHHHHHHHHHHHHHHHcCCcCCCc-ccccCcCHHHHHHhcCCEEEEECCCCcch--hh
Confidence 555 3566888998654444444444444432221 124443311 11123477777776666666777665422 11
Q ss_pred HHhCCCeE--Ee-CCCCCcccccCCCeEEeChhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEe
Q 002515 307 KMFQMPVI--EV-PTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVL 383 (913)
Q Consensus 307 ~iY~l~vv--~I-Pt~~p~~R~d~~d~v~~t~~~k~~aii~ei~~~~~~grPVLI~t~Si~~SE~ls~~L~~~gi~~~vL 383 (913)
..-+ ++ .+ ||..+ .|..-......++..+++++....++|..|||||.|...++.|++.|.+.|+++..+
T Consensus 400 ~~~~--iv~~i~rp~gl~-----~p~~~v~~~~~qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~l 472 (655)
T TIGR00631 400 QSGN--VVEQIIRPTGLL-----DPEIEVRPTDGQVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYL 472 (655)
T ss_pred hccC--eeeeeccccCCC-----CCcEEEeeccchHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeee
Confidence 1111 22 12 22211 122223344667889999999988999999999999999999999999999999999
Q ss_pred ccCCcchhhHHHHHH-hcCCCccEEEEcCCCCCCccee
Q 002515 384 NARPKYAAREAETVA-QAGRKYAITISTNMAGRGTDII 420 (913)
Q Consensus 384 nA~~k~~~~Ea~Iia-~AG~~G~VTIATnmAGRGTDIk 420 (913)
|+.....+|+..+.. +.| .-.|.||||+++||.|+.
T Consensus 473 h~~~~~~eR~~~l~~fr~G-~i~VLV~t~~L~rGfDiP 509 (655)
T TIGR00631 473 HSEIDTLERVEIIRDLRLG-EFDVLVGINLLREGLDLP 509 (655)
T ss_pred eCCCCHHHHHHHHHHHhcC-CceEEEEcChhcCCeeeC
Confidence 986444455433333 566 457889999999999994
No 114
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=98.65 E-value=1.5e-06 Score=104.52 Aligned_cols=63 Identities=24% Similarity=0.239 Sum_probs=51.6
Q ss_pred HhcCC--eEEecCCCchHHHHHHHHHHHHH--cCCcEEEEecCHHHHHHHHHHHHHHh-hhcC--CeEEE
Q 002515 14 LHDGS--IAEMKTGEGKTLVSTLAAYLNAL--TGEGVHVVTVNDYLAQRDAEWMERVH-RFLG--LSVGL 76 (913)
Q Consensus 14 L~~G~--IaEm~TGEGKTLva~lpa~l~AL--~G~~VhVvT~NdyLA~RDae~~~~~y-~~LG--Lsv~~ 76 (913)
|.+|. ++|+.||.|||+++++|+...+. .|++|.|.|++..|+.|-.+.+..+- +.+| +++.+
T Consensus 13 l~~~~~lliEA~TGtGKTlAYLlpal~~~~~~~~~rvlIstpT~~Lq~Ql~~~l~~l~~~~l~~~i~~~~ 82 (636)
T TIGR03117 13 LRQKRIGMLEASTGVGKTLAMIMAALTMLKERPDQKIAIAVPTLALMGQLWSELERLTAEGLAGPVQAGF 82 (636)
T ss_pred HhcCCeEEEEcCCCCcHHHHHHHHHHHHHHhccCceEEEECCcHHHHHHHHHHHHHHHHhhcCCCeeEEE
Confidence 44554 89999999999999999976666 48899999999999999999888777 5555 44444
No 115
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=98.62 E-value=4e-06 Score=105.73 Aligned_cols=137 Identities=16% Similarity=0.085 Sum_probs=85.9
Q ss_pred hhHHhhcCcccccCCCcccHH--HHHHHHhCCC-----eEEeCCCCCcc---c----ccCCCeEEeChhHHHHHHHHHHH
Q 002515 282 QSLFKLYPKLSGMTGTAKTEE--KEFLKMFQMP-----VIEVPTNLPNI---R----VDLPIQSFATARGKWEYARQEVE 347 (913)
Q Consensus 282 q~~F~~Y~kL~GmTGTa~te~--~Ef~~iY~l~-----vv~IPt~~p~~---R----~d~~d~v~~t~~~k~~aii~ei~ 347 (913)
..+|........+|||+.... .-|.+..|++ ...+|+-.+.. + .|.|+.-..+.++-..++++.|.
T Consensus 666 ~~l~~~~~~~iltSATL~~~~~f~~~~~~lGl~~~~~~~~~~~SpF~~~~q~~l~vp~d~p~~~~~~~~~~~~~la~~i~ 745 (928)
T PRK08074 666 DEFFAKKKSVILTSATLTVNGSFDYIIERLGLEDFYPRTLQIPSPFSYEEQAKLMIPTDMPPIKDVPIEEYIEEVAAYIA 745 (928)
T ss_pred HHHHhcCCcEEEEeeecccCCCcHHHHHhcCCCCCCccEEEeCCCCCHHHhcEEEeecCCCCCCCCChHHHHHHHHHHHH
Confidence 345566678889999997532 3345667774 36677754431 1 12332222334455577888887
Q ss_pred HHH-hcCCcEEEEecchhhHHHHHHHHHHCCCC--eEEeccCCcchhhHHHHHH--hcCCCccEEEEcCCCCCCccee
Q 002515 348 SMF-RLGRPVLVGSTSVENSEYLSDLLKQQGIP--HNVLNARPKYAAREAETVA--QAGRKYAITISTNMAGRGTDII 420 (913)
Q Consensus 348 ~~~-~~grPVLI~t~Si~~SE~ls~~L~~~gi~--~~vLnA~~k~~~~Ea~Iia--~AG~~G~VTIATnmAGRGTDIk 420 (913)
+.. ..+.++||+++|-+.-+.+++.|+..... ..++.-+.....++ .++. +.+ .++|.++|.-..-|+|+.
T Consensus 746 ~l~~~~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~-~l~~~F~~~-~~~iLlG~~sFwEGVD~p 821 (928)
T PRK08074 746 KIAKATKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRA-RLTKQFQQF-DKAILLGTSSFWEGIDIP 821 (928)
T ss_pred HHHHhCCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHH-HHHHHHHhc-CCeEEEecCcccCccccC
Confidence 665 45569999999999999999999765321 22333111112332 3333 334 578999999999999986
No 116
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=98.58 E-value=2.8e-06 Score=94.14 Aligned_cols=268 Identities=18% Similarity=0.222 Sum_probs=158.8
Q ss_pred chhHHHHHHHHhcCC--eEEecCCCchHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCC
Q 002515 4 FDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGM 81 (913)
Q Consensus 4 ~dvQl~g~l~L~~G~--IaEm~TGEGKTLva~lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLsv~~i~~~~ 81 (913)
.|.|+-++-+...|. +.-|.||-||+|.+-|||.+ ...-..||+|=-.|-+...- ..+.||++......+.
T Consensus 96 rplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~---adg~alvi~plislmedqil----~lkqlgi~as~lnans 168 (695)
T KOG0353|consen 96 RPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALC---ADGFALVICPLISLMEDQIL----QLKQLGIDASMLNANS 168 (695)
T ss_pred ChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHh---cCCceEeechhHHHHHHHHH----HHHHhCcchhhccCcc
Confidence 367888887777776 88999999999999999973 34457899998777764433 4567899988777766
Q ss_pred CHHHHHhc----cC----CCeEEECCCcchhhHHHHhhccchhhhhccCCCCceEEEeecchhhhhccCCCceeccCCCC
Q 002515 82 IPEERRSN----YR----CDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEAS 153 (913)
Q Consensus 82 ~~~~r~~a----Y~----~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~tPLiiSg~~~ 153 (913)
+.++-+.. -+ -..+|.||..+. ...+..+.-++... -|-|...-|||||.--
T Consensus 169 ske~~k~v~~~i~nkdse~kliyvtpekia----ksk~~mnkleka~~-~~~~~~iaidevhccs--------------- 228 (695)
T KOG0353|consen 169 SKEEAKRVEAAITNKDSEFKLIYVTPEKIA----KSKKFMNKLEKALE-AGFFKLIAIDEVHCCS--------------- 228 (695)
T ss_pred cHHHHHHHHHHHcCCCceeEEEEecHHHHH----HHHHHHHHHHHHhh-cceeEEEeecceeehh---------------
Confidence 65543321 11 258899987654 22222221122221 1267788899999842
Q ss_pred CCccchHHHHHHHHHhccCCCeEEeCCCCeeeccHhhHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHhhccCcceEEE
Q 002515 154 KDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVR 233 (913)
Q Consensus 154 ~~~~~y~~~~~~v~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~l~~~i~~Al~A~~l~~~d~dYiV~ 233 (913)
+ -+-||..|-+ |-..++
T Consensus 229 --------------q--wghdfr~dy~---------------------------------------~l~ilk-------- 245 (695)
T KOG0353|consen 229 --------------Q--WGHDFRPDYK---------------------------------------ALGILK-------- 245 (695)
T ss_pred --------------h--hCcccCcchH---------------------------------------HHHHHH--------
Confidence 0 1223332210 001111
Q ss_pred CCeEEEEeCCCCccccCcccChhhhHHHHhHhCCcccCCceeeeeeeehhHHhhcC--cccccCCCcccH-HHHHHHHhC
Q 002515 234 NGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYP--KLSGMTGTAKTE-EKEFLKMFQ 310 (913)
Q Consensus 234 dg~V~iVD~~TGR~~~gr~ws~GLHQaieaKEgv~i~~e~~t~a~IT~q~~F~~Y~--kL~GmTGTa~te-~~Ef~~iY~ 310 (913)
|+|+ .|.|+|+||.+- -....++.+
T Consensus 246 ----------------------------------------------------rqf~~~~iigltatatn~vl~d~k~il~ 273 (695)
T KOG0353|consen 246 ----------------------------------------------------RQFKGAPIIGLTATATNHVLDDAKDILC 273 (695)
T ss_pred ----------------------------------------------------HhCCCCceeeeehhhhcchhhHHHHHHh
Confidence 1111 356778777652 223333333
Q ss_pred CC---eEEeCCCCCcccccCCCeEE---eChhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEec
Q 002515 311 MP---VIEVPTNLPNIRVDLPIQSF---ATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLN 384 (913)
Q Consensus 311 l~---vv~IPt~~p~~R~d~~d~v~---~t~~~k~~aii~ei~~~~~~grPVLI~t~Si~~SE~ls~~L~~~gi~~~vLn 384 (913)
+. .+.-.-|+|... ..|- .++++-...|+..|+... .||.-+|.|-|-.+||.++..|+.+||...-.|
T Consensus 274 ie~~~tf~a~fnr~nl~----yev~qkp~n~dd~~edi~k~i~~~f-~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yh 348 (695)
T KOG0353|consen 274 IEAAFTFRAGFNRPNLK----YEVRQKPGNEDDCIEDIAKLIKGDF-AGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYH 348 (695)
T ss_pred HHhhheeecccCCCCce----eEeeeCCCChHHHHHHHHHHhcccc-CCCcceEEEeccccHHHHHHHHHhcCccccccc
Confidence 32 122222333321 1111 134444555666665543 689999999999999999999999999877777
Q ss_pred cCCcchhh-HHHHHHhcCCCccEEEEcCCCCCCcce
Q 002515 385 ARPKYAAR-EAETVAQAGRKYAITISTNMAGRGTDI 419 (913)
Q Consensus 385 A~~k~~~~-Ea~Iia~AG~~G~VTIATnmAGRGTDI 419 (913)
|..+-..+ -++--=-|| .-.|+|||=-.|-|+|=
T Consensus 349 a~lep~dks~~hq~w~a~-eiqvivatvafgmgidk 383 (695)
T KOG0353|consen 349 ANLEPEDKSGAHQGWIAG-EIQVIVATVAFGMGIDK 383 (695)
T ss_pred cccCcccccccccccccc-ceEEEEEEeeecccCCC
Confidence 74211111 111111244 34799999999999985
No 117
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=98.44 E-value=8.9e-06 Score=99.73 Aligned_cols=134 Identities=13% Similarity=0.157 Sum_probs=83.0
Q ss_pred hhHHhhcCcccccCCCcccH--HHHHHHHhCCC------eEEeCCCCCcc---cccCCCeEE--eChhHHHHHHHHHHHH
Q 002515 282 QSLFKLYPKLSGMTGTAKTE--EKEFLKMFQMP------VIEVPTNLPNI---RVDLPIQSF--ATARGKWEYARQEVES 348 (913)
Q Consensus 282 q~~F~~Y~kL~GmTGTa~te--~~Ef~~iY~l~------vv~IPt~~p~~---R~d~~d~v~--~t~~~k~~aii~ei~~ 348 (913)
..+|+.+.....+|||+... -.-|.+.-|++ .+.+|+.++.. ..-.|+..+ .+..+...++++.|.+
T Consensus 450 ~~l~~~~~~vIltSATL~~~~~f~~~~~~lGL~~~~~~~~~~~~SpF~~~~q~~l~vp~~~~~p~~~~~~~~~~~~~i~~ 529 (697)
T PRK11747 450 RLLWSRAPGAVLTSATLRSLNSFDRFQEQSGLPEKDGDRFLALPSPFDYPNQGKLVIPKMRAEPDNEEAHTAEMAEFLPE 529 (697)
T ss_pred HHHHhhCCEEEEEeeeCCCCCchHHHHHHcCCCCCCCceEEEcCCCCCHHHccEEEeCCCCCCCCCcHHHHHHHHHHHHH
Confidence 45566677777888888652 23344555653 45677765541 111222211 2445566788888877
Q ss_pred HHhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEeccCCcchhhHHHHH----Hh--cCCCccEEEEcCCCCCCccee
Q 002515 349 MFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETV----AQ--AGRKYAITISTNMAGRGTDII 420 (913)
Q Consensus 349 ~~~~grPVLI~t~Si~~SE~ls~~L~~~gi~~~vLnA~~k~~~~Ea~Ii----a~--AG~~G~VTIATnmAGRGTDIk 420 (913)
....+..+||+++|-+.-+.++..|.... ...++--+ . ..++ .++ .. +| .++|.++|.-..=|+|+.
T Consensus 530 l~~~~gg~LVlFtSy~~l~~v~~~l~~~~-~~~ll~Q~-~-~~~~-~ll~~f~~~~~~~-~~~VL~g~~sf~EGVD~p 602 (697)
T PRK11747 530 LLEKHKGSLVLFASRRQMQKVADLLPRDL-RLMLLVQG-D-QPRQ-RLLEKHKKRVDEG-EGSVLFGLQSFAEGLDLP 602 (697)
T ss_pred HHhcCCCEEEEeCcHHHHHHHHHHHHHhc-CCcEEEeC-C-chHH-HHHHHHHHHhccC-CCeEEEEeccccccccCC
Confidence 66555558999999999999999987531 22333322 1 2232 233 21 34 578999999999999997
No 118
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=98.32 E-value=4.6e-05 Score=94.28 Aligned_cols=124 Identities=22% Similarity=0.197 Sum_probs=72.7
Q ss_pred cccccCCCcccHHHHHHHHhC-CCeEEeCCC-CCcccccCCCeEEeChhH-HHHHHHHHHHHHH-hcCCcEEEEecchhh
Q 002515 290 KLSGMTGTAKTEEKEFLKMFQ-MPVIEVPTN-LPNIRVDLPIQSFATARG-KWEYARQEVESMF-RLGRPVLVGSTSVEN 365 (913)
Q Consensus 290 kL~GmTGTa~te~~Ef~~iY~-l~vv~IPt~-~p~~R~d~~d~v~~t~~~-k~~aii~ei~~~~-~~grPVLI~t~Si~~ 365 (913)
|+.-||+|+.. +.|.+.++ .+|+.||.- .|+...-.+.. ..+. -..+++.-|.... ...-.||||.+-..+
T Consensus 197 KiIimSATld~--~rfs~~f~~apvi~i~GR~fPVei~Y~~~~---~~d~~l~~ai~~~v~~~~~~~~GdILvFLpG~~E 271 (845)
T COG1643 197 KLIIMSATLDA--ERFSAYFGNAPVIEIEGRTYPVEIRYLPEA---EADYILLDAIVAAVDIHLREGSGSILVFLPGQRE 271 (845)
T ss_pred eEEEEecccCH--HHHHHHcCCCCEEEecCCccceEEEecCCC---CcchhHHHHHHHHHHHhccCCCCCEEEECCcHHH
Confidence 35568888874 55888777 789999863 34422111111 1122 2234444444433 233589999999999
Q ss_pred HHHHHHHHHHCC----CCeEEeccCCcchhhHHHHHHhc-CCCccEEEEcCCCCCCcce
Q 002515 366 SEYLSDLLKQQG----IPHNVLNARPKYAAREAETVAQA-GRKYAITISTNMAGRGTDI 419 (913)
Q Consensus 366 SE~ls~~L~~~g----i~~~vLnA~~k~~~~Ea~Iia~A-G~~G~VTIATnmAGRGTDI 419 (913)
-+...+.|.+.. +...-|++.....++. .++.-+ +..-.|.+|||+|-=+.=|
T Consensus 272 I~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~-rvF~p~~~~~RKVVlATNIAETSLTI 329 (845)
T COG1643 272 IERTAEWLEKAELGDDLEILPLYGALSAEEQV-RVFEPAPGGKRKVVLATNIAETSLTI 329 (845)
T ss_pred HHHHHHHHHhccccCCcEEeeccccCCHHHHH-hhcCCCCCCcceEEEEccccccceee
Confidence 999999998832 3444577753222222 244322 2112299999999765544
No 119
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=98.26 E-value=3.8e-06 Score=83.58 Aligned_cols=134 Identities=19% Similarity=0.118 Sum_probs=76.3
Q ss_pred CCchhHHHHHHHHh--------cCC-eEEecCCCchHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCC
Q 002515 2 RHFDVQIIGGAVLH--------DGS-IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGL 72 (913)
Q Consensus 2 rp~dvQl~g~l~L~--------~G~-IaEm~TGEGKTLva~lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGL 72 (913)
.++|-|.-+.-.+. .++ +..|.||.|||.+++.++. .|.. .+.++|||..|+.+-.+.+..+......
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~--~l~~-~~l~~~p~~~l~~Q~~~~~~~~~~~~~~ 79 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALIL--ELAR-KVLIVAPNISLLEQWYDEFDDFGSEKYN 79 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHH--HHHC-EEEEEESSHHHHHHHHHHHHHHSTTSEE
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhh--cccc-ceeEecCHHHHHHHHHHHHHHhhhhhhh
Confidence 34556665555443 122 9999999999998885443 2222 9999999999999888888544432222
Q ss_pred eEEEE-----------cC--CCCHHHHHhccCCCeEEECCCcchhhHHHHhhcc----chhhhhccCCCCceEEEeecch
Q 002515 73 SVGLI-----------QR--GMIPEERRSNYRCDITYTNNSELGFDYLRDNLAA----NSEQLVMRWPKPFHFAIVDEVD 135 (913)
Q Consensus 73 sv~~i-----------~~--~~~~~~r~~aY~~DI~YgT~~e~~fDyLrD~l~~----~~~~~v~r~~R~~~~aIVDEvD 135 (913)
..... .. .............+|.+.|...+.-+.-...... ........ .++++|+||+|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~vI~DEaH 156 (184)
T PF04851_consen 80 FFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKN---KFDLVIIDEAH 156 (184)
T ss_dssp EEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGG---SESEEEEETGG
T ss_pred hcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccc---cCCEEEEehhh
Confidence 21111 01 1122233345567899999877643321110000 00111223 68899999999
Q ss_pred hhhhcc
Q 002515 136 SVLIDE 141 (913)
Q Consensus 136 siLiDe 141 (913)
.+-.+.
T Consensus 157 ~~~~~~ 162 (184)
T PF04851_consen 157 HYPSDS 162 (184)
T ss_dssp CTHHHH
T ss_pred hcCCHH
Confidence 976443
No 120
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=98.26 E-value=8.5e-05 Score=92.51 Aligned_cols=112 Identities=18% Similarity=0.201 Sum_probs=73.1
Q ss_pred eEEecCCCchHHHHHHHHHHHHHcCC------------cEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHH
Q 002515 19 IAEMKTGEGKTLVSTLAAYLNALTGE------------GVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEER 86 (913)
Q Consensus 19 IaEm~TGEGKTLva~lpa~l~AL~G~------------~VhVvT~NdyLA~RDae~~~~~y~~LGLsv~~i~~~~~~~~r 86 (913)
+....||.|||-+|+|.+. +.+.++ .+-=+.|-..|++--.-.+..=+..||++|+--++++.. .+
T Consensus 329 LlCAPTGaGKTNVAvLtiL-qel~~h~r~dgs~nl~~fKIVYIAPmKaLvqE~VgsfSkRla~~GI~V~ElTgD~~l-~~ 406 (1674)
T KOG0951|consen 329 LLCAPTGAGKTNVAVLTIL-QELGNHLREDGSVNLAPFKIVYIAPMKALVQEMVGSFSKRLAPLGITVLELTGDSQL-GK 406 (1674)
T ss_pred EEeccCCCCchHHHHHHHH-HHHhcccccccceecccceEEEEeeHHHHHHHHHHHHHhhccccCcEEEEecccccc-hh
Confidence 7888899999999999985 777653 222345567888744444445557889999998887542 23
Q ss_pred HhccCCCeEEECCCcchhhHHHHhhccchhhhhccCCCCceEEEeecchhhhhcc
Q 002515 87 RSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDE 141 (913)
Q Consensus 87 ~~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDe 141 (913)
++.-...|+.||+.. +|-+-.+=... ..++ -++.+||||+| ||-|+
T Consensus 407 ~qieeTqVIV~TPEK--~DiITRk~gdr--aY~q----lvrLlIIDEIH-LLhDd 452 (1674)
T KOG0951|consen 407 EQIEETQVIVTTPEK--WDIITRKSGDR--AYEQ----LVRLLIIDEIH-LLHDD 452 (1674)
T ss_pred hhhhcceeEEeccch--hhhhhcccCch--hHHH----HHHHHhhhhhh-hcccc
Confidence 345567899999988 45442221100 1122 35678999998 44444
No 121
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=98.09 E-value=6.9e-05 Score=91.13 Aligned_cols=65 Identities=28% Similarity=0.193 Sum_probs=52.9
Q ss_pred CCchhHHHHHH----HHhcCC--eEEecCCCchHHHHHHHHHHHHHc-CCcEEEEecCHHHHHHHHHHHHHH
Q 002515 2 RHFDVQIIGGA----VLHDGS--IAEMKTGEGKTLVSTLAAYLNALT-GEGVHVVTVNDYLAQRDAEWMERV 66 (913)
Q Consensus 2 rp~dvQl~g~l----~L~~G~--IaEm~TGEGKTLva~lpa~l~AL~-G~~VhVvT~NdyLA~RDae~~~~~ 66 (913)
.|++-|..-+- ++.+|+ ++|+.||.|||+.+++|+...+.. |++|.|.|.+.-|-.+..++..|+
T Consensus 15 ~~r~~Q~~~~~~v~~a~~~~~~~~iEapTGtGKTl~yL~~al~~~~~~~~~viist~t~~lq~q~~~~~~~~ 86 (654)
T COG1199 15 EPRPEQREMAEAVAEALKGGEGLLIEAPTGTGKTLAYLLPALAYAREEGKKVIISTRTKALQEQLLEEDLPI 86 (654)
T ss_pred CCCHHHHHHHHHHHHHHcCCCcEEEECCCCccHHHHHHHHHHHHHHHcCCcEEEECCCHHHHHHHHHhhcch
Confidence 57777765553 445555 999999999999999999987755 589999999998888888877775
No 122
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=98.04 E-value=3.1e-05 Score=87.37 Aligned_cols=66 Identities=21% Similarity=0.288 Sum_probs=52.0
Q ss_pred cEEEEecchhhHHHHHHHHHHCC---CCeEEeccCCcchhhHHHHHHhcCCCccEEEEcCCCCCCccee
Q 002515 355 PVLVGSTSVENSEYLSDLLKQQG---IPHNVLNARPKYAAREAETVAQAGRKYAITISTNMAGRGTDII 420 (913)
Q Consensus 355 PVLI~t~Si~~SE~ls~~L~~~g---i~~~vLnA~~k~~~~Ea~Iia~AG~~G~VTIATnmAGRGTDIk 420 (913)
..+|||++..+++-|.+++.++| ..|.-|+++.|-+++-+++-.-.-..-...|+|+.|.||.||.
T Consensus 507 kaiifcrtk~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~ 575 (725)
T KOG0349|consen 507 KAIIFCRTKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDIT 575 (725)
T ss_pred ceEEEEeccccchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhcccccc
Confidence 45799999999999999998887 4667789876666666666653322446789999999999995
No 123
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=98.01 E-value=0.00034 Score=83.30 Aligned_cols=115 Identities=23% Similarity=0.296 Sum_probs=70.6
Q ss_pred cccccCCCcccHHHHHHHHhC-CCeEEeCCC-CCcccccCCCeEEe---ChhHHHHHHHHHHHHHH--hcCCcEEEEecc
Q 002515 290 KLSGMTGTAKTEEKEFLKMFQ-MPVIEVPTN-LPNIRVDLPIQSFA---TARGKWEYARQEVESMF--RLGRPVLVGSTS 362 (913)
Q Consensus 290 kL~GmTGTa~te~~Ef~~iY~-l~vv~IPt~-~p~~R~d~~d~v~~---t~~~k~~aii~ei~~~~--~~grPVLI~t~S 362 (913)
|+.-||+|+. ++-|.+.|+ .+++.||.. .|+ .|+- ...+-..+.+.-|...| +.--=||||-+.
T Consensus 197 klIimSATld--a~kfS~yF~~a~i~~i~GR~fPV-------ei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvFLtG 267 (674)
T KOG0922|consen 197 KLIIMSATLD--AEKFSEYFNNAPILTIPGRTFPV-------EILYLKEPTADYVDAALITVIQIHLTEPPGDILVFLTG 267 (674)
T ss_pred eEEEEeeeec--HHHHHHHhcCCceEeecCCCCce-------eEEeccCCchhhHHHHHHHHHHHHccCCCCCEEEEeCC
Confidence 3556777775 455777655 489999973 343 2322 23445566676777766 333479999999
Q ss_pred hhhHHHHHHHHHHC------CCCe--EEeccCCcchhhHHHHHHhcCC--CccEEEEcCCCCC
Q 002515 363 VENSEYLSDLLKQQ------GIPH--NVLNARPKYAAREAETVAQAGR--KYAITISTNMAGR 415 (913)
Q Consensus 363 i~~SE~ls~~L~~~------gi~~--~vLnA~~k~~~~Ea~Iia~AG~--~G~VTIATnmAGR 415 (913)
.++.|...+.|.+. ++|. --+++. -...|..-|-+-.. .-.|.+|||+|-=
T Consensus 268 qeEIe~~~~~l~e~~~~~~~~~~~~~lply~a--L~~e~Q~rvF~p~p~g~RKvIlsTNIAET 328 (674)
T KOG0922|consen 268 QEEIEAACELLRERAKSLPEDCPELILPLYGA--LPSEEQSRVFDPAPPGKRKVILSTNIAET 328 (674)
T ss_pred HHHHHHHHHHHHHHhhhccccCcceeeeeccc--CCHHHhhccccCCCCCcceEEEEcceeee
Confidence 99999999998774 2221 124553 12333333332222 3479999999863
No 124
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=98.01 E-value=1.9e-05 Score=69.16 Aligned_cols=49 Identities=20% Similarity=0.414 Sum_probs=37.4
Q ss_pred HHHHHCCCCeEEeccCCcchhhHHHHHH-hcCCCccEEEEcCCCCCCccee
Q 002515 371 DLLKQQGIPHNVLNARPKYAAREAETVA-QAGRKYAITISTNMAGRGTDII 420 (913)
Q Consensus 371 ~~L~~~gi~~~vLnA~~k~~~~Ea~Iia-~AG~~G~VTIATnmAGRGTDIk 420 (913)
+.|+..|++...+|++.....++..+-. +.| .+.|.|||+++|+|+|+.
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~-~~~vli~t~~~~~Gid~~ 50 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSG-EIRVLIATDILGEGIDLP 50 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTT-SSSEEEESCGGTTSSTST
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhcc-CceEEEeecccccccccc
Confidence 4688999999999997544444433333 566 459999999999999994
No 125
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.90 E-value=0.0003 Score=83.36 Aligned_cols=110 Identities=25% Similarity=0.283 Sum_probs=67.7
Q ss_pred HHHHHHHHhcCCeEEecCCCchHHHHHHHHHHHHHcCCcEEEEecCH-----HHHHHHHHHHHHHhhhcCCeEEEEc--C
Q 002515 7 QIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVND-----YLAQRDAEWMERVHRFLGLSVGLIQ--R 79 (913)
Q Consensus 7 Ql~g~l~L~~G~IaEm~TGEGKTLva~lpa~l~AL~G~~VhVvT~Nd-----yLA~RDae~~~~~y~~LGLsv~~i~--~ 79 (913)
||+..+.=++=-|+-=.||+|||.-.+--+|.......|...+|--+ .+|+|-+++|+ --||=+||.-. .
T Consensus 363 ~ll~~ir~n~vvvivgETGSGKTTQl~QyL~edGY~~~GmIGcTQPRRvAAiSVAkrVa~EM~---~~lG~~VGYsIRFE 439 (1042)
T KOG0924|consen 363 QLLSVIRENQVVVIVGETGSGKTTQLAQYLYEDGYADNGMIGCTQPRRVAAISVAKRVAEEMG---VTLGDTVGYSIRFE 439 (1042)
T ss_pred HHHHHHhhCcEEEEEecCCCCchhhhHHHHHhcccccCCeeeecCchHHHHHHHHHHHHHHhC---CccccccceEEEee
Confidence 55555543333356667999999865555554444445655555443 67899999986 23455555321 1
Q ss_pred CCCHHHHHhccCCCeEEECCCcchhhHHHHhhccchhhhhccCCCCceEEEeecchh
Q 002515 80 GMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDS 136 (913)
Q Consensus 80 ~~~~~~r~~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs 136 (913)
+.+.+ ..-|-|-|-+=| ||..+.. ..+. ++.++|+||||-
T Consensus 440 dvT~~------~T~IkymTDGiL----LrEsL~d----~~L~---kYSviImDEAHE 479 (1042)
T KOG0924|consen 440 DVTSE------DTKIKYMTDGIL----LRESLKD----RDLD---KYSVIIMDEAHE 479 (1042)
T ss_pred ecCCC------ceeEEEeccchH----HHHHhhh----hhhh---heeEEEechhhh
Confidence 21111 124889998876 6666653 3455 899999999996
No 126
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=97.89 E-value=0.00031 Score=85.20 Aligned_cols=118 Identities=15% Similarity=0.160 Sum_probs=82.2
Q ss_pred HHHHHHHhcCCeEEecCCCchHHHHHHHHHHHHHc---CCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCC-CCH
Q 002515 8 IIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALT---GEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRG-MIP 83 (913)
Q Consensus 8 l~g~l~L~~G~IaEm~TGEGKTLva~lpa~l~AL~---G~~VhVvT~NdyLA~RDae~~~~~y~~LGLsv~~i~~~-~~~ 83 (913)
-++-.+|.++-|+-..||.|||.+|+..++ +-+. +.+|-+++|+.=|-.|....+...... -++....++ .++
T Consensus 69 eivq~ALgkNtii~lPTG~GKTfIAa~Vm~-nh~rw~p~~KiVF~aP~~pLv~QQ~a~~~~~~~~--~~~T~~l~~~~~~ 145 (746)
T KOG0354|consen 69 ELVQPALGKNTIIALPTGSGKTFIAAVIMK-NHFEWRPKGKVVFLAPTRPLVNQQIACFSIYLIP--YSVTGQLGDTVPR 145 (746)
T ss_pred HHhHHhhcCCeEEEeecCCCccchHHHHHH-HHHhcCCcceEEEeeCCchHHHHHHHHHhhccCc--ccceeeccCccCC
Confidence 466678866779999999999999998886 4444 457999999998888887666665544 444444455 334
Q ss_pred HHHHhccC-CCeEEECCCcchhhHHHHhhccchhhhhccCCCCceEEEeecchhh
Q 002515 84 EERRSNYR-CDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV 137 (913)
Q Consensus 84 ~~r~~aY~-~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsi 137 (913)
.-|...|. ++|.+.|+..+ ++.|.....+. +. .|..+|+||||.-
T Consensus 146 ~~r~~i~~s~~vff~TpQil-----~ndL~~~~~~~-ls---~fs~iv~DE~Hra 191 (746)
T KOG0354|consen 146 SNRGEIVASKRVFFRTPQIL-----ENDLKSGLHDE-LS---DFSLIVFDECHRT 191 (746)
T ss_pred CchhhhhcccceEEeChHhh-----hhhcccccccc-cc---eEEEEEEcccccc
Confidence 44445665 49999999875 33343221111 33 6899999999984
No 127
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=97.88 E-value=0.00062 Score=85.66 Aligned_cols=118 Identities=20% Similarity=0.246 Sum_probs=94.2
Q ss_pred hhHHHHHHHH----hcCC----eEEecCCCchHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEE
Q 002515 5 DVQIIGGAVL----HDGS----IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGL 76 (913)
Q Consensus 5 dvQl~g~l~L----~~G~----IaEm~TGEGKTLva~lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLsv~~ 76 (913)
|=|+.++=.. .+|+ +++=.-|=|||-||+=+|+..+..||+|-|+.|+--||+|.++.|..=|.-++++|..
T Consensus 597 ~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~ 676 (1139)
T COG1197 597 PDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMDGKQVAVLVPTTLLAQQHYETFKERFAGFPVRIEV 676 (1139)
T ss_pred HHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcCCCeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEE
Confidence 5577776643 3454 8888899999999999999888999999999999999999999999999999999998
Q ss_pred EcCCCCHHHHHhcc------CCCeEEECCCcchhhHHHHhhccchhhhhccCCCCceEEEeecchhh
Q 002515 77 IQRGMIPEERRSNY------RCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV 137 (913)
Q Consensus 77 i~~~~~~~~r~~aY------~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsi 137 (913)
...=.+..+.+..- ..||+.||..=++ . +.... .+..+||||=+.+
T Consensus 677 LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL~-----k-------dv~Fk---dLGLlIIDEEqRF 728 (1139)
T COG1197 677 LSRFRSAKEQKEILKGLAEGKVDIVIGTHRLLS-----K-------DVKFK---DLGLLIIDEEQRF 728 (1139)
T ss_pred ecccCCHHHHHHHHHHHhcCCccEEEechHhhC-----C-------CcEEe---cCCeEEEechhhc
Confidence 87666666555433 3699999986432 1 12223 7889999997774
No 128
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=97.82 E-value=0.0022 Score=78.24 Aligned_cols=123 Identities=18% Similarity=0.233 Sum_probs=75.9
Q ss_pred CCchhHHHHHH--HHhcCC---eEEecCCCchHHHHHHHHHHHHHcC--CcEEEEecCHHHHHHHHHHHHHHhhhcCCeE
Q 002515 2 RHFDVQIIGGA--VLHDGS---IAEMKTGEGKTLVSTLAAYLNALTG--EGVHVVTVNDYLAQRDAEWMERVHRFLGLSV 74 (913)
Q Consensus 2 rp~dvQl~g~l--~L~~G~---IaEm~TGEGKTLva~lpa~l~AL~G--~~VhVvT~NdyLA~RDae~~~~~y~~LGLsv 74 (913)
|+|-.+.|.-+ ++++|+ +..|+||.|||-||.-.++...=+| |+|..++=-..|-+|-.+.+..+.= .|=.+
T Consensus 167 RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii~rL~r~~~~KRVLFLaDR~~Lv~QA~~af~~~~P-~~~~~ 245 (875)
T COG4096 167 RYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIIDRLIKSGWVKRVLFLADRNALVDQAYGAFEDFLP-FGTKM 245 (875)
T ss_pred hHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHHHHHHHHhcchhheeeEEechHHHHHHHHHHHHHhCC-Cccce
Confidence 44444444433 457888 9999999999998777666544445 6899999999999988777554432 22223
Q ss_pred EEEcCCCCHHHHHhccCCCeEEECCCcchhhHHHHhhccchhhhhcc-CCCCceEEEeecchhh
Q 002515 75 GLIQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMR-WPKPFHFAIVDEVDSV 137 (913)
Q Consensus 75 ~~i~~~~~~~~r~~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r-~~R~~~~aIVDEvDsi 137 (913)
..+.... ..-.|+|..+|--.+. ...... +.-..| .+..|+++||||+|+=
T Consensus 246 n~i~~~~------~~~s~~i~lsTyqt~~-----~~~~~~-~~~~~~f~~g~FDlIvIDEaHRg 297 (875)
T COG4096 246 NKIEDKK------GDTSSEIYLSTYQTMT-----GRIEQK-EDEYRRFGPGFFDLIVIDEAHRG 297 (875)
T ss_pred eeeeccc------CCcceeEEEeehHHHH-----hhhhcc-ccccccCCCCceeEEEechhhhh
Confidence 3332211 1115678888876642 222221 011112 3346999999999974
No 129
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.80 E-value=0.00062 Score=80.74 Aligned_cols=116 Identities=20% Similarity=0.236 Sum_probs=74.1
Q ss_pred ccccCCCcccHHHHHHHHhC-CCeEEeCCCCCcccccCCC-eEE--eChhHHHHHHHHHHHHHH--hcCCcEEEEecchh
Q 002515 291 LSGMTGTAKTEEKEFLKMFQ-MPVIEVPTNLPNIRVDLPI-QSF--ATARGKWEYARQEVESMF--RLGRPVLVGSTSVE 364 (913)
Q Consensus 291 L~GmTGTa~te~~Ef~~iY~-l~vv~IPt~~p~~R~d~~d-~v~--~t~~~k~~aii~ei~~~~--~~grPVLI~t~Si~ 364 (913)
|.-+|+|.. +++|...|+ .+|+.||..+ .|- ..| ..+++...|.+.-|...| +.+--||||-.--+
T Consensus 413 llIsSAT~D--AekFS~fFDdapIF~iPGRR------yPVdi~Yt~~PEAdYldAai~tVlqIH~tqp~GDILVFltGQe 484 (902)
T KOG0923|consen 413 LLISSATMD--AEKFSAFFDDAPIFRIPGRR------YPVDIFYTKAPEADYLDAAIVTVLQIHLTQPLGDILVFLTGQE 484 (902)
T ss_pred EEeeccccC--HHHHHHhccCCcEEeccCcc------cceeeecccCCchhHHHHHHhhheeeEeccCCccEEEEeccHH
Confidence 445666664 678888886 4788999833 222 333 356677888888888776 34456999998877
Q ss_pred hHHHHHHHHHHC----C--CC---eEEeccCCcchhhHHHHHHhcCCCc--cEEEEcCCCCCC
Q 002515 365 NSEYLSDLLKQQ----G--IP---HNVLNARPKYAAREAETVAQAGRKY--AITISTNMAGRG 416 (913)
Q Consensus 365 ~SE~ls~~L~~~----g--i~---~~vLnA~~k~~~~Ea~Iia~AG~~G--~VTIATnmAGRG 416 (913)
+-|.....|+.. | ++ .--++|. --..+..-|-+-..+| .|.+|||+|-=-
T Consensus 485 EIEt~~e~l~~~~~~LGski~eliv~PiYaN--LPselQakIFePtP~gaRKVVLATNIAETS 545 (902)
T KOG0923|consen 485 EIETVKENLKERCRRLGSKIRELIVLPIYAN--LPSELQAKIFEPTPPGARKVVLATNIAETS 545 (902)
T ss_pred HHHHHHHHHHHHHHHhccccceEEEeecccc--CChHHHHhhcCCCCCCceeEEEeecchhhc
Confidence 777666666542 2 11 2234553 1233445566665564 799999999743
No 130
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=97.78 E-value=7.8e-05 Score=64.31 Aligned_cols=52 Identities=31% Similarity=0.404 Sum_probs=38.5
Q ss_pred HHHHHHHHCCCCeEEeccCCcchhhHHHHHH-hcCCCccEEEEcCCCCCCccee
Q 002515 368 YLSDLLKQQGIPHNVLNARPKYAAREAETVA-QAGRKYAITISTNMAGRGTDII 420 (913)
Q Consensus 368 ~ls~~L~~~gi~~~vLnA~~k~~~~Ea~Iia-~AG~~G~VTIATnmAGRGTDIk 420 (913)
.++..|+..+++..++++.....+++..+.. +.| ...|.|+|+++|+|+|+.
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~-~~~vli~t~~~~~Gi~~~ 54 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNG-KIKVLVATDVAERGLDLP 54 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcC-CCeEEEECChhhCCcChh
Confidence 5778888889999999986433344333333 445 459999999999999985
No 131
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=97.19 E-value=0.0065 Score=75.86 Aligned_cols=111 Identities=23% Similarity=0.251 Sum_probs=71.9
Q ss_pred HHHHHHHHhcCCeEEecCCCchHH-H--HHHHHHHHHHcCCcEEEEecCH------HHHHHHHHHHHHHhhhcCCeEEEE
Q 002515 7 QIIGGAVLHDGSIAEMKTGEGKTL-V--STLAAYLNALTGEGVHVVTVND------YLAQRDAEWMERVHRFLGLSVGLI 77 (913)
Q Consensus 7 Ql~g~l~L~~G~IaEm~TGEGKTL-v--a~lpa~l~AL~G~~VhVvT~Nd------yLA~RDae~~~~~y~~LGLsv~~i 77 (913)
+++-++-=++=-|+-=.||+|||. + |.|-.+ .-.|..|-||+.-+ .+|+|-+.+- ...+|-+||..
T Consensus 180 ~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~--~~~~~~~~IicTQPRRIsAIsvAeRVa~ER---~~~~g~~VGYq 254 (924)
T KOG0920|consen 180 TILDAIEENQVVVISGETGCGKTTQVPQFILDEA--IESGAACNIICTQPRRISAISVAERVAKER---GESLGEEVGYQ 254 (924)
T ss_pred HHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHH--HhcCCCCeEEecCCchHHHHHHHHHHHHHh---ccccCCeeeEE
Confidence 455555544445777789999996 3 333332 23456666666554 6888888876 67788888876
Q ss_pred cCCCCHHHHHhccCCCeEEECCCcchhhHHHHhhccchhhhhccCCCCceEEEeecchhh
Q 002515 78 QRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV 137 (913)
Q Consensus 78 ~~~~~~~~r~~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsi 137 (913)
..-. ++.....-++|+|.+-| ||- +.. +.++. +...+||||||-=
T Consensus 255 vrl~----~~~s~~t~L~fcTtGvL----Lr~-L~~---~~~l~---~vthiivDEVHER 299 (924)
T KOG0920|consen 255 VRLE----SKRSRETRLLFCTTGVL----LRR-LQS---DPTLS---GVTHIIVDEVHER 299 (924)
T ss_pred Eeee----cccCCceeEEEecHHHH----HHH-hcc---Ccccc---cCceeeeeeEEEc
Confidence 5432 22344466999999874 443 332 34455 8889999999963
No 132
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=97.19 E-value=0.00077 Score=82.59 Aligned_cols=109 Identities=20% Similarity=0.163 Sum_probs=67.5
Q ss_pred CCeEEecCCCchHHHHHHHHHH--HHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHH--hccCC
Q 002515 17 GSIAEMKTGEGKTLVSTLAAYL--NALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERR--SNYRC 92 (913)
Q Consensus 17 G~IaEm~TGEGKTLva~lpa~l--~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLsv~~i~~~~~~~~r~--~aY~~ 92 (913)
+-+..|.||+|||++++..+.. ..+.+..|.|||+...|..|-.+.|..+.. -.+..+ +....-++ ....+
T Consensus 265 ~gli~~~TGsGKT~t~~~la~~l~~~~~~~~vl~lvdR~~L~~Q~~~~f~~~~~---~~~~~~--~s~~~L~~~l~~~~~ 339 (667)
T TIGR00348 265 GGLIWHTQGSGKTLTMLFAARKALELLKNPKVFFVVDRRELDYQLMKEFQSLQK---DCAERI--ESIAELKRLLEKDDG 339 (667)
T ss_pred eeEEEEecCCCccHHHHHHHHHHHhhcCCCeEEEEECcHHHHHHHHHHHHhhCC---CCCccc--CCHHHHHHHHhCCCC
Confidence 3499999999999998777653 234567899999999999998888777542 111111 11111122 22346
Q ss_pred CeEEECCCcchhhHHHHhhccchhhhhccCCCCceEEEeecchhh
Q 002515 93 DITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV 137 (913)
Q Consensus 93 DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsi 137 (913)
+|+.+|..-|.- .+.+.+.. . ...+...++||||||+.
T Consensus 340 ~iivtTiQk~~~-~~~~~~~~----~--~~~~~~~lvIvDEaHrs 377 (667)
T TIGR00348 340 GIIITTIQKFDK-KLKEEEEK----F--PVDRKEVVVIFDEAHRS 377 (667)
T ss_pred CEEEEEhHHhhh-hHhhhhhc----c--CCCCCCEEEEEEcCccc
Confidence 899999887642 11111110 0 01123458999999974
No 133
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=97.01 E-value=0.051 Score=67.09 Aligned_cols=97 Identities=27% Similarity=0.344 Sum_probs=74.6
Q ss_pred eEEecCCCchHHHHHHHHHHHHH-cCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHHhcc------C
Q 002515 19 IAEMKTGEGKTLVSTLAAYLNAL-TGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNY------R 91 (913)
Q Consensus 19 IaEm~TGEGKTLva~lpa~l~AL-~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLsv~~i~~~~~~~~r~~aY------~ 91 (913)
+..--||+|||-+++=.+. .+| .|++|.|+.|-=.|--|-.+. |-..||.+|++..+++++.+|...+ .
T Consensus 221 Ll~GvTGSGKTEvYl~~i~-~~L~~GkqvLvLVPEI~Ltpq~~~r---f~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~ 296 (730)
T COG1198 221 LLDGVTGSGKTEVYLEAIA-KVLAQGKQVLVLVPEIALTPQLLAR---FKARFGAKVAVLHSGLSPGERYRVWRRARRGE 296 (730)
T ss_pred eEeCCCCCcHHHHHHHHHH-HHHHcCCEEEEEeccccchHHHHHH---HHHHhCCChhhhcccCChHHHHHHHHHHhcCC
Confidence 8888999999998876665 444 589999999987777765544 4456679999999999999886544 3
Q ss_pred CCeEEECCCcchhhHHHHhhccchhhhhccCCCCceEEEeecchh
Q 002515 92 CDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDS 136 (913)
Q Consensus 92 ~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs 136 (913)
+.||.||-+-+ | .-.. ++..+||||=|.
T Consensus 297 ~~vVIGtRSAl-F-------------~Pf~---~LGLIIvDEEHD 324 (730)
T COG1198 297 ARVVIGTRSAL-F-------------LPFK---NLGLIIVDEEHD 324 (730)
T ss_pred ceEEEEechhh-c-------------Cchh---hccEEEEecccc
Confidence 68999998764 1 1123 789999999765
No 134
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=96.99 E-value=0.14 Score=62.47 Aligned_cols=89 Identities=21% Similarity=0.228 Sum_probs=68.0
Q ss_pred EeChhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEeccCCcchhhHHHHHHhcCC---CccEEE
Q 002515 332 FATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQAGR---KYAITI 408 (913)
Q Consensus 332 ~~t~~~k~~aii~ei~~~~~~grPVLI~t~Si~~SE~ls~~L~~~gi~~~vLnA~~k~~~~Ea~Iia~AG~---~G~VTI 408 (913)
..+...|+.-+=..+...+++|-.||||.+-...-+.|-.++--+|....-|.+-..+.+|++.|-+---. .---.+
T Consensus 466 Lv~nSGKm~vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlL 545 (971)
T KOG0385|consen 466 LVTNSGKMLVLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLL 545 (971)
T ss_pred HHhcCcceehHHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEE
Confidence 44556677655566678889999999999988888889888888999888889876677888777762221 235678
Q ss_pred EcCCCCCCccee
Q 002515 409 STNMAGRGTDII 420 (913)
Q Consensus 409 ATnmAGRGTDIk 420 (913)
+|.-.|-|+...
T Consensus 546 STRAGGLGINL~ 557 (971)
T KOG0385|consen 546 STRAGGLGINLT 557 (971)
T ss_pred eccccccccccc
Confidence 899888887653
No 135
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=96.98 E-value=0.0044 Score=76.52 Aligned_cols=131 Identities=22% Similarity=0.253 Sum_probs=89.4
Q ss_pred CCchhHHHHHH--HHhcCC--eEEecCCCchHHHHHHHHHHHHHc-CCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEE
Q 002515 2 RHFDVQIIGGA--VLHDGS--IAEMKTGEGKTLVSTLAAYLNALT-GEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGL 76 (913)
Q Consensus 2 rp~dvQl~g~l--~L~~G~--IaEm~TGEGKTLva~lpa~l~AL~-G~~VhVvT~NdyLA~RDae~~~~~y~~LGLsv~~ 76 (913)
.+|+.|.-+.- .+++|+ |--..|+-|||||+.+......|. ++.|..+-|=-.-++--.+.|.+|..-+|+.|-+
T Consensus 223 ~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~rr~~llilp~vsiv~Ek~~~l~~~~~~~G~~ve~ 302 (1008)
T KOG0950|consen 223 KLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCRRRNVLLILPYVSIVQEKISALSPFSIDLGFPVEE 302 (1008)
T ss_pred HHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHHhhceeEecceeehhHHHHhhhhhhccccCCcchh
Confidence 36788876654 344443 889999999999999998877765 5667777776667777788999999999999998
Q ss_pred EcCCCCHHHHHhccCCCeEEECCCcchhhHHHHhhccchhhhhccCCCCceEEEeecchhhhhccCC
Q 002515 77 IQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGR 143 (913)
Q Consensus 77 i~~~~~~~~r~~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~ 143 (913)
..|..+|+-+++. -+|..+|..- + .-|-+.+-.. .| .-.+..++|||.|- ++|..|
T Consensus 303 y~g~~~p~~~~k~--~sv~i~tiEk-a-nslin~lie~-----g~-~~~~g~vvVdElhm-i~d~~r 358 (1008)
T KOG0950|consen 303 YAGRFPPEKRRKR--ESVAIATIEK-A-NSLINSLIEQ-----GR-LDFLGMVVVDELHM-IGDKGR 358 (1008)
T ss_pred hcccCCCCCcccc--eeeeeeehHh-h-HhHHHHHHhc-----CC-ccccCcEEEeeeee-eecccc
Confidence 8887777655443 2466677532 1 1123332211 11 11577899999874 457644
No 136
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=96.97 E-value=0.078 Score=64.84 Aligned_cols=87 Identities=18% Similarity=0.245 Sum_probs=62.5
Q ss_pred EeChhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHH-HCCCCeEEeccCCcchhhHHHHHH--hcCCCccE-E
Q 002515 332 FATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLK-QQGIPHNVLNARPKYAAREAETVA--QAGRKYAI-T 407 (913)
Q Consensus 332 ~~t~~~k~~aii~ei~~~~~~grPVLI~t~Si~~SE~ls~~L~-~~gi~~~vLnA~~k~~~~Ea~Iia--~AG~~G~V-T 407 (913)
......|...+...+...+++|..||+|+.|...-..|-..|. ..|+.+--+.+...-..|- .+|. +++..-.| .
T Consensus 525 ~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~-~lVd~Fne~~s~~VFL 603 (923)
T KOG0387|consen 525 DPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQ-KLVDRFNEDESIFVFL 603 (923)
T ss_pred ChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhh-HHHHhhcCCCceEEEE
Confidence 3455678888899999999999999999999999999999998 6899988888764333343 3443 44444333 3
Q ss_pred EEcCCCCCCcce
Q 002515 408 ISTNMAGRGTDI 419 (913)
Q Consensus 408 IATnmAGRGTDI 419 (913)
+.|..-|-|+..
T Consensus 604 LTTrvGGLGlNL 615 (923)
T KOG0387|consen 604 LTTRVGGLGLNL 615 (923)
T ss_pred EEeccccccccc
Confidence 455555555543
No 137
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=96.95 E-value=0.0023 Score=70.79 Aligned_cols=65 Identities=22% Similarity=0.169 Sum_probs=49.2
Q ss_pred CCchhHHHH----HHHHhcCC--eEEecCCCchHHHHHHHHHHHHHc-CC-----cEEEEecCHHHHHHHHHHHHHH
Q 002515 2 RHFDVQIIG----GAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALT-GE-----GVHVVTVNDYLAQRDAEWMERV 66 (913)
Q Consensus 2 rp~dvQl~g----~l~L~~G~--IaEm~TGEGKTLva~lpa~l~AL~-G~-----~VhVvT~NdyLA~RDae~~~~~ 66 (913)
.|||.|+.- .-.+.+|. |+|+.||.|||+++++|++..+.. +. .|.++|.+..+.++...++..+
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00489 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 477888762 22445555 899999999999999999655443 43 7899999999988887777655
No 138
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=96.95 E-value=0.0023 Score=70.79 Aligned_cols=65 Identities=22% Similarity=0.169 Sum_probs=49.2
Q ss_pred CCchhHHHH----HHHHhcCC--eEEecCCCchHHHHHHHHHHHHHc-CC-----cEEEEecCHHHHHHHHHHHHHH
Q 002515 2 RHFDVQIIG----GAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALT-GE-----GVHVVTVNDYLAQRDAEWMERV 66 (913)
Q Consensus 2 rp~dvQl~g----~l~L~~G~--IaEm~TGEGKTLva~lpa~l~AL~-G~-----~VhVvT~NdyLA~RDae~~~~~ 66 (913)
.|||.|+.- .-.+.+|. |+|+.||.|||+++++|++..+.. +. .|.++|.+..+.++...++..+
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00488 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 477888762 22445555 899999999999999999655443 43 7899999999988887777655
No 139
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=96.88 E-value=0.0078 Score=72.62 Aligned_cols=116 Identities=23% Similarity=0.307 Sum_probs=81.1
Q ss_pred hhHHHHHHHHhcCC--eEEecCCCchHHHHHHHHHHHHHcCC-cEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCC
Q 002515 5 DVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALTGE-GVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGM 81 (913)
Q Consensus 5 dvQl~g~l~L~~G~--IaEm~TGEGKTLva~lpa~l~AL~G~-~VhVvT~NdyLA~RDae~~~~~y~~LGLsv~~i~~~~ 81 (913)
|-|-.++.++-.|. ++-+.|-.|||.+|--+++ .+|..+ +|.--+|=..|+.|-+-++..=|.-.||=.|-++=+
T Consensus 132 pFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA-~sLr~kQRVIYTSPIKALSNQKYREl~~EF~DVGLMTGDVTIn- 209 (1041)
T KOG0948|consen 132 PFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIA-MSLREKQRVIYTSPIKALSNQKYRELLEEFKDVGLMTGDVTIN- 209 (1041)
T ss_pred chHhhhhhhhcCCceEEEEeecCCCcchHHHHHHH-HHHHhcCeEEeeChhhhhcchhHHHHHHHhcccceeecceeeC-
Confidence 45777888887776 8999999999999988887 688766 455556677899988888777777666655533211
Q ss_pred CHHHHHhccCCCeEEECCCcchhhHHHHhhccchhhhhccCCCCceEEEeecchhhhhcc
Q 002515 82 IPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDE 141 (913)
Q Consensus 82 ~~~~r~~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDe 141 (913)
|. -.| .+-+| ..||..+... .-++| ...++|.||+|-|- |.
T Consensus 210 -P~-----ASC-LVMTT------EILRsMLYRG--SEvmr---EVaWVIFDEIHYMR-Dk 250 (1041)
T KOG0948|consen 210 -PD-----ASC-LVMTT------EILRSMLYRG--SEVMR---EVAWVIFDEIHYMR-DK 250 (1041)
T ss_pred -CC-----Cce-eeeHH------HHHHHHHhcc--chHhh---eeeeEEeeeehhcc-cc
Confidence 10 111 22222 2577766654 34678 99999999999996 44
No 140
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=96.84 E-value=0.0044 Score=78.11 Aligned_cols=122 Identities=23% Similarity=0.202 Sum_probs=87.6
Q ss_pred CchhHHHHHHHHhcCC--eEEecCCCchHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCC
Q 002515 3 HFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRG 80 (913)
Q Consensus 3 p~dvQl~g~l~L~~G~--IaEm~TGEGKTLva~lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLsv~~i~~~ 80 (913)
+.|-|--++.+|-.|. ++...||.|||.++=.+.++.-..|.+|.-.||-..|..+-+-++..-|.-.-=-+|+.+++
T Consensus 120 LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~~~qrviYTsPIKALsNQKyrdl~~~fgdv~~~vGL~TGD 199 (1041)
T COG4581 120 LDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALRDGQRVIYTSPIKALSNQKYRDLLAKFGDVADMVGLMTGD 199 (1041)
T ss_pred cCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHHcCCceEeccchhhhhhhHHHHHHHHhhhhhhhccceecc
Confidence 5678999999988776 99999999999999988886667788999999999999987777666665440012334433
Q ss_pred CCHHHHHhccCCC-eEEECCCcchhhHHHHhhccchhhhhccCCCCceEEEeecchhhhhcc
Q 002515 81 MIPEERRSNYRCD-ITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDE 141 (913)
Q Consensus 81 ~~~~~r~~aY~~D-I~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDe 141 (913)
.+. .=.+. ++++| | +||.-+... .-.++ +..++|.||||-|= |.
T Consensus 200 v~I-----N~~A~clvMTT--E----ILRnMlyrg--~~~~~---~i~~ViFDEvHyi~-D~ 244 (1041)
T COG4581 200 VSI-----NPDAPCLVMTT--E----ILRNMLYRG--SESLR---DIEWVVFDEVHYIG-DR 244 (1041)
T ss_pred eee-----CCCCceEEeeH--H----HHHHHhccC--ccccc---ccceEEEEeeeecc-cc
Confidence 221 11233 45555 4 687766554 24566 99999999999985 44
No 141
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=96.09 E-value=0.012 Score=63.42 Aligned_cols=109 Identities=21% Similarity=0.306 Sum_probs=59.0
Q ss_pred cCCeEEecCCCchHHHHHHHHH-HHHHcCC----cEEEEecCHHHHHHHHHHHHHHhhhc---CCeEEEEcCCCCHHHHH
Q 002515 16 DGSIAEMKTGEGKTLVSTLAAY-LNALTGE----GVHVVTVNDYLAQRDAEWMERVHRFL---GLSVGLIQRGMIPEERR 87 (913)
Q Consensus 16 ~G~IaEm~TGEGKTLva~lpa~-l~AL~G~----~VhVvT~NdyLA~RDae~~~~~y~~L---GLsv~~i~~~~~~~~r~ 87 (913)
.|-|.--.+|.|||++++..+. +...... ++.||+|+.-+. .|...+-.++ .+.+....+.. ...+.
T Consensus 26 ~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~~~~~~LIv~P~~l~~----~W~~E~~~~~~~~~~~v~~~~~~~-~~~~~ 100 (299)
T PF00176_consen 26 RGGLLADEMGLGKTITAIALISYLKNEFPQRGEKKTLIVVPSSLLS----QWKEEIEKWFDPDSLRVIIYDGDS-ERRRL 100 (299)
T ss_dssp -EEEE---TTSSHHHHHHHHHHHHHHCCTTSS-S-EEEEE-TTTHH----HHHHHHHHHSGT-TS-EEEESSSC-HHHHT
T ss_pred CCEEEEECCCCCchhhhhhhhhhhhhccccccccceeEeeccchhh----hhhhhhcccccccccccccccccc-ccccc
Confidence 3457777899999987665553 3333222 499999996554 3777777666 56776665543 11111
Q ss_pred ---hccCCCeEEECCCcchhhHHHHhhc-cchhhhhccCCCCceEEEeecchhh
Q 002515 88 ---SNYRCDITYTNNSELGFDYLRDNLA-ANSEQLVMRWPKPFHFAIVDEVDSV 137 (913)
Q Consensus 88 ---~aY~~DI~YgT~~e~~fDyLrD~l~-~~~~~~v~r~~R~~~~aIVDEvDsi 137 (913)
..-..||+.+|-+. ++..-. ...+..-.- +++++||||+|.+
T Consensus 101 ~~~~~~~~~vvi~ty~~-----~~~~~~~~~~~~l~~~---~~~~vIvDEaH~~ 146 (299)
T PF00176_consen 101 SKNQLPKYDVVITTYET-----LRKARKKKDKEDLKQI---KWDRVIVDEAHRL 146 (299)
T ss_dssp TSSSCCCSSEEEEEHHH-----HH--TSTHTTHHHHTS---EEEEEEETTGGGG
T ss_pred cccccccceeeeccccc-----cccccccccccccccc---cceeEEEeccccc
Confidence 12235788777544 330000 111112222 6999999999997
No 142
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=95.89 E-value=0.014 Score=58.54 Aligned_cols=101 Identities=19% Similarity=0.250 Sum_probs=53.2
Q ss_pred cCC--eEEecCCCchHHHHHHHHHHHHH-cCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHHhccCC
Q 002515 16 DGS--IAEMKTGEGKTLVSTLAAYLNAL-TGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNYRC 92 (913)
Q Consensus 16 ~G~--IaEm~TGEGKTLva~lpa~l~AL-~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLsv~~i~~~~~~~~r~~aY~~ 92 (913)
+|. +..+.+|.|||--..--.+-.++ .+.+|.|+.|++.+|+ +|.+-.+-++ +.+...-.. ...+..
T Consensus 3 kg~~~~~d~hpGaGKTr~vlp~~~~~~i~~~~rvLvL~PTRvva~----em~~aL~~~~--~~~~t~~~~----~~~~g~ 72 (148)
T PF07652_consen 3 KGELTVLDLHPGAGKTRRVLPEIVREAIKRRLRVLVLAPTRVVAE----EMYEALKGLP--VRFHTNARM----RTHFGS 72 (148)
T ss_dssp TTEEEEEE--TTSSTTTTHHHHHHHHHHHTT--EEEEESSHHHHH----HHHHHTTTSS--EEEESTTSS--------SS
T ss_pred CCceeEEecCCCCCCcccccHHHHHHHHHccCeEEEecccHHHHH----HHHHHHhcCC--cccCceeee----ccccCC
Confidence 455 67889999999743332333455 4678999999999987 5665555444 433322211 133444
Q ss_pred -CeEEECCCcchhhHHHHhhccchhhhhccCCCCceEEEeecchhh
Q 002515 93 -DITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV 137 (913)
Q Consensus 93 -DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsi 137 (913)
-|++.|.+-|+ .|+.+ +. . .+ .++|+|+||+|+.
T Consensus 73 ~~i~vMc~at~~-~~~~~-----p~-~-~~---~yd~II~DEcH~~ 107 (148)
T PF07652_consen 73 SIIDVMCHATYG-HFLLN-----PC-R-LK---NYDVIIMDECHFT 107 (148)
T ss_dssp SSEEEEEHHHHH-HHHHT-----SS-C-TT---S-SEEEECTTT--
T ss_pred CcccccccHHHH-HHhcC-----cc-c-cc---CccEEEEeccccC
Confidence 35555554432 22211 11 1 23 8999999999983
No 143
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=95.71 E-value=0.58 Score=58.39 Aligned_cols=79 Identities=24% Similarity=0.306 Sum_probs=55.2
Q ss_pred HHHHHHHHHH-HHHHhcCC--cEEEEecchhhHHHHHHHHHHCCCCeEEeccCCcchhhHHHHHH--hcCCC-ccEEEEc
Q 002515 337 GKWEYARQEV-ESMFRLGR--PVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVA--QAGRK-YAITIST 410 (913)
Q Consensus 337 ~k~~aii~ei-~~~~~~gr--PVLI~t~Si~~SE~ls~~L~~~gi~~~vLnA~~k~~~~Ea~Iia--~AG~~-G~VTIAT 410 (913)
.|..++.+.+ ......|. +||||++....-+.+...|...++++.-+++......+. .+|. .++.. -...++|
T Consensus 692 ~k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~-~~i~~f~~~~~~~v~lls~ 770 (866)
T COG0553 692 GKLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQ-ELIDRFNADEEEKVFLLSL 770 (866)
T ss_pred hHHHHHHHHHHHHHHhhcccccEEEEeCcHHHHHHHHHHHHhcCCcEEEEeCCCChhhHH-HHHHHhhcCCCCceEEEEe
Confidence 6777766666 56778898 999999999999999999999998888999864323333 3443 55522 2344444
Q ss_pred CCCCCC
Q 002515 411 NMAGRG 416 (913)
Q Consensus 411 nmAGRG 416 (913)
--+|-|
T Consensus 771 kagg~g 776 (866)
T COG0553 771 KAGGLG 776 (866)
T ss_pred cccccc
Confidence 444443
No 144
>PRK14873 primosome assembly protein PriA; Provisional
Probab=95.44 E-value=0.079 Score=65.16 Aligned_cols=93 Identities=17% Similarity=0.209 Sum_probs=71.5
Q ss_pred CCCchHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcC-CeEEEEcCCCCHHHHHhccC------CCeEE
Q 002515 24 TGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLG-LSVGLIQRGMIPEERRSNYR------CDITY 96 (913)
Q Consensus 24 TGEGKTLva~lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LG-Lsv~~i~~~~~~~~r~~aY~------~DI~Y 96 (913)
+|+|||-+++=.+.-..-.|++|.|+.|.-.|..|-.+.+.. .|| -.|+...+++++.+|...|. ++|+.
T Consensus 169 ~GSGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~---~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IVi 245 (665)
T PRK14873 169 PGEDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRA---LLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVV 245 (665)
T ss_pred CCCcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHH---HcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEE
Confidence 699999998776653334599999999999999977666654 555 77999999999999987773 58999
Q ss_pred ECCCcchhhHHHHhhccchhhhhccCCCCceEEEeecchh
Q 002515 97 TNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDS 136 (913)
Q Consensus 97 gT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs 136 (913)
||=+-+ | .-.+ ++..+||||=|.
T Consensus 246 GtRSAv--------F------aP~~---~LgLIIvdEEhd 268 (665)
T PRK14873 246 GTRSAV--------F------APVE---DLGLVAIWDDGD 268 (665)
T ss_pred EcceeE--------E------eccC---CCCEEEEEcCCc
Confidence 998764 1 1123 678888888654
No 145
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=95.23 E-value=1.2 Score=57.37 Aligned_cols=333 Identities=19% Similarity=0.263 Sum_probs=172.7
Q ss_pred CCeEEecCCCchHH-HHHHHHHH-HHHcCC-cEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHHhccCCC
Q 002515 17 GSIAEMKTGEGKTL-VSTLAAYL-NALTGE-GVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNYRCD 93 (913)
Q Consensus 17 G~IaEm~TGEGKTL-va~lpa~l-~AL~G~-~VhVvT~NdyLA~RDae~~~~~y~~LGLsv~~i~~~~~~~~r~~aY~~D 93 (913)
..|.-=.-|=|||+ +.++..|+ +.+.=+ +..||+|=.+++. |-+.|-.|..+.+.+..|+....+-...|.
T Consensus 391 n~ILADEmgLgktvqti~fl~~l~~~~~~~gpflvvvplst~~~----W~~ef~~w~~mn~i~y~g~~~sr~~i~~ye-- 464 (1373)
T KOG0384|consen 391 NCILADEMGLGKTVQTITFLSYLFHSLQIHGPFLVVVPLSTITA----WEREFETWTDMNVIVYHGNLESRQLIRQYE-- 464 (1373)
T ss_pred cceehhhcCCCcchHHHHHHHHHHHhhhccCCeEEEeehhhhHH----HHHHHHHHhhhceeeeecchhHHHHHHHHH--
Confidence 33554456999998 55555554 344223 5667788777764 999999999999999888876554444554
Q ss_pred eEEECC-CcchhhHHHHhhccch-hhhhccCCCCceEEEeecchhhhhccC-----------CCceeccCCCCCCccchH
Q 002515 94 ITYTNN-SELGFDYLRDNLAANS-EQLVMRWPKPFHFAIVDEVDSVLIDEG-----------RNPLLISGEASKDVARYP 160 (913)
Q Consensus 94 I~YgT~-~e~~fDyLrD~l~~~~-~~~v~r~~R~~~~aIVDEvDsiLiDea-----------~tPLiiSg~~~~~~~~y~ 160 (913)
.+|..+ +.+.|+-|..-+..-- +..++. .=+..|++|||||+.=-++. .+-|.|+|.+--++ ..
T Consensus 465 ~~~~~~~~~lkf~~lltTye~~LkDk~~L~-~i~w~~~~vDeahrLkN~~~~l~~~l~~f~~~~rllitgTPlQNs--ik 541 (1373)
T KOG0384|consen 465 FYHSSNTKKLKFNALLTTYEIVLKDKAELS-KIPWRYLLVDEAHRLKNDESKLYESLNQFKMNHRLLITGTPLQNS--LK 541 (1373)
T ss_pred heecCCccccccceeehhhHHHhccHhhhc-cCCcceeeecHHhhcCchHHHHHHHHHHhcccceeeecCCCcccc--HH
Confidence 444442 3444555443322110 112332 11567999999998643432 34566776543221 12
Q ss_pred HHHHHHHHhccCCCeEEeCC--CCeeeccHhhHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHhhccCcceEEECCeEE
Q 002515 161 VAAKVAELLVQGLHYTVELK--NNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVRNGKAL 238 (913)
Q Consensus 161 ~~~~~v~~l~~~~~y~~d~~--~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~l~~~i~~Al~A~~l~~~d~dYiV~dg~V~ 238 (913)
.+..++..|.++.+...++= +. -.-|+.|+..+...+. .++..
T Consensus 542 EL~sLl~Fl~P~kf~~~~~f~~~~-~~~~e~~~~~L~~~L~------------P~~lR---------------------- 586 (1373)
T KOG0384|consen 542 ELWSLLHFLMPGKFDSWDEFLEEF-DEETEEQVRKLQQILK------------PFLLR---------------------- 586 (1373)
T ss_pred HHHHHhcccCCCCCCcHHHHHHhh-cchhHHHHHHHHHHhh------------HHHHH----------------------
Confidence 23333334444322111100 00 0113333333322211 11111
Q ss_pred EEeCCCCccccCcccChhhhHHHHhHhCCcc--cCCceeeeeeee---hhHH------hhcCcc-cccCCCccc---HHH
Q 002515 239 IINELTGRVEEKRRWSEGIHQAVEAKEGLKI--QADSVVVAQITY---QSLF------KLYPKL-SGMTGTAKT---EEK 303 (913)
Q Consensus 239 iVD~~TGR~~~gr~ws~GLHQaieaKEgv~i--~~e~~t~a~IT~---q~~F------~~Y~kL-~GmTGTa~t---e~~ 303 (913)
..|+.|+= .|...++-.+-. |.-| +.|.-| -|..|+.-+ -.-
T Consensus 587 -----------------------r~kkdvekslp~k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~~g~~~~lLNimm 643 (1373)
T KOG0384|consen 587 -----------------------RLKKDVEKSLPPKEETILRVELSDLQKQYYKAILTKNFSALTKGAKGSTPSLLNIMM 643 (1373)
T ss_pred -----------------------HHHhhhccCCCCCcceEEEeehhHHHHHHHHHHHHhhHHHHhccCCCCCchHHHHHH
Confidence 12222221 122222222222 2111 223322 233343322 245
Q ss_pred HHHHHhCCCeEEeCCCCCcccccCCCeEEeChhHHHHHHHH---------H-HHHHHhcCCcEEEEecchhhHHHHHHHH
Q 002515 304 EFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQ---------E-VESMFRLGRPVLVGSTSVENSEYLSDLL 373 (913)
Q Consensus 304 Ef~~iY~l~vv~IPt~~p~~R~d~~d~v~~t~~~k~~aii~---------e-i~~~~~~grPVLI~t~Si~~SE~ls~~L 373 (913)
||.+--|-+...=|.- .....+..+ ....+.+.++|. . +-++.+.|-.||||.+-|..-+.|+++|
T Consensus 644 ELkKccNHpyLi~gae-e~~~~~~~~---~~~d~~L~~lI~sSGKlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL 719 (1373)
T KOG0384|consen 644 ELKKCCNHPYLIKGAE-EKILGDFRD---KMRDEALQALIQSSGKLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYL 719 (1373)
T ss_pred HHHHhcCCccccCcHH-HHHHHhhhh---cchHHHHHHHHHhcCcEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHH
Confidence 6666666555432221 111111111 013345555432 2 2345678899999999999999999999
Q ss_pred HHCCCCeEEeccCCcchhhHHHHHH-hc--CCCccEEEEcCCCCCCccee
Q 002515 374 KQQGIPHNVLNARPKYAAREAETVA-QA--GRKYAITISTNMAGRGTDII 420 (913)
Q Consensus 374 ~~~gi~~~vLnA~~k~~~~Ea~Iia-~A--G~~G~VTIATnmAGRGTDIk 420 (913)
..+|+|++-|.+..+-.-|-++|-. .| -.--.-.++|.--|-|+...
T Consensus 720 ~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGINLa 769 (1373)
T KOG0384|consen 720 SLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINLA 769 (1373)
T ss_pred HHcCCcceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCccccccc
Confidence 9999999999996444444455543 22 11126789999999997643
No 146
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=95.03 E-value=0.93 Score=56.93 Aligned_cols=118 Identities=20% Similarity=0.171 Sum_probs=85.5
Q ss_pred hhHHHHHHHHhcCC--eEEecCCCchHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCC
Q 002515 5 DVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMI 82 (913)
Q Consensus 5 dvQl~g~l~L~~G~--IaEm~TGEGKTLva~lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLsv~~i~~~~~ 82 (913)
.-|-.++.+|..|. .+-+.|-.|||+||=-++++.--.|.+..--+|=..|+.|-+-+|+.-|.--| +++|+..
T Consensus 300 ~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq~h~TR~iYTSPIKALSNQKfRDFk~tF~Dvg----LlTGDvq 375 (1248)
T KOG0947|consen 300 TFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTSPIKALSNQKFRDFKETFGDVG----LLTGDVQ 375 (1248)
T ss_pred HHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHHhhccceEecchhhhhccchHHHHHHhccccc----eeeccee
Confidence 45888888998888 88899999999999888876666666666667778999998888888888666 4555431
Q ss_pred HHHHHhccCCCeEEECCCcchhhHHHHhhccchhhhhccCCCCceEEEeecchhhhhccC
Q 002515 83 PEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEG 142 (913)
Q Consensus 83 ~~~r~~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea 142 (913)
..=.|.++.-|- -.||..+..+ .-+.| ...|+|.||||-|= |.-
T Consensus 376 -----inPeAsCLIMTT-----EILRsMLYrg--adliR---DvE~VIFDEVHYiN-D~e 419 (1248)
T KOG0947|consen 376 -----INPEASCLIMTT-----EILRSMLYRG--ADLIR---DVEFVIFDEVHYIN-DVE 419 (1248)
T ss_pred -----eCCCcceEeehH-----HHHHHHHhcc--cchhh---ccceEEEeeeeecc-ccc
Confidence 111234555553 2477766654 24567 89999999999875 443
No 147
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=94.58 E-value=1.6 Score=51.56 Aligned_cols=86 Identities=12% Similarity=0.002 Sum_probs=61.5
Q ss_pred hhHHHHHHHHHHHH----HHhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEeccCCcchhhHHHHHHhcCCC-ccEEE-
Q 002515 335 ARGKWEYARQEVES----MFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQAGRK-YAITI- 408 (913)
Q Consensus 335 ~~~k~~aii~ei~~----~~~~grPVLI~t~Si~~SE~ls~~L~~~gi~~~vLnA~~k~~~~Ea~Iia~AG~~-G~VTI- 408 (913)
...|..++++.+.. .-+.++.+|||+.-..--+.|...+.++++++--+++....++|+.-. +..|- -.|-|
T Consensus 470 giaK~~av~eyi~~~~~l~d~~~~KflVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~--qsFQ~seev~VA 547 (689)
T KOG1000|consen 470 GIAKAAAVCEYILENYFLPDAPPRKFLVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLC--QSFQTSEEVRVA 547 (689)
T ss_pred cccccHHHHHHHHhCcccccCCCceEEEEehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHH--HHhccccceEEE
Confidence 34577788888877 458889999999999999999999999999999999975455555333 22222 22333
Q ss_pred --EcCCCCCCcceecC
Q 002515 409 --STNMAGRGTDIILG 422 (913)
Q Consensus 409 --ATnmAGRGTDIkLg 422 (913)
+---||=|.|+.-+
T Consensus 548 vlsItA~gvGLt~tAa 563 (689)
T KOG1000|consen 548 VLSITAAGVGLTLTAA 563 (689)
T ss_pred EEEEeecccceeeecc
Confidence 33457788888643
No 148
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=94.20 E-value=3.5 Score=51.50 Aligned_cols=53 Identities=17% Similarity=0.207 Sum_probs=44.1
Q ss_pred ChhHHHHHHHHHHHHHHhcC---CcEEEEecchhhHHHHHHHHHHCCCCeEEeccC
Q 002515 334 TARGKWEYARQEVESMFRLG---RPVLVGSTSVENSEYLSDLLKQQGIPHNVLNAR 386 (913)
Q Consensus 334 t~~~k~~aii~ei~~~~~~g---rPVLI~t~Si~~SE~ls~~L~~~gi~~~vLnA~ 386 (913)
+..+....|+++|.+.+..| .-+.|.+++-..+..+.+.|.++|||+.+..+.
T Consensus 325 ~~~~Ea~~ia~~I~~l~~~g~~~~diAVL~R~~~~~~~le~~L~~~gIPy~~~g~~ 380 (721)
T PRK11773 325 NELDEARFVVERIKTWQDNGGALSDCAILYRSNAQSRVLEEALLQAGIPYRIYGGM 380 (721)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCcccEEEEEecchhHHHHHHHHHHCCCCEEEECCC
Confidence 45555677889998888777 357888999999999999999999999988664
No 149
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=93.87 E-value=0.31 Score=57.75 Aligned_cols=135 Identities=20% Similarity=0.238 Sum_probs=100.0
Q ss_pred eeehhHHhhcCcccccCCCcccHHHHHHHHhCCCeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHHHhcCCcEEE
Q 002515 279 ITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLV 358 (913)
Q Consensus 279 IT~q~~F~~Y~kL~GmTGTa~te~~Ef~~iY~l~vv~IPt~~p~~R~d~~d~v~~t~~~k~~aii~ei~~~~~~grPVLI 358 (913)
.+|..|-.+-++..-+|+|-|..+-|...--=.+-++=||... -|.........+..-++.+|....++|-.|||
T Consensus 377 L~feEf~~~~~q~i~VSATPg~~E~e~s~~~vveQiIRPTGLl-----DP~ievRp~~~QvdDL~~EI~~r~~~~eRvLV 451 (663)
T COG0556 377 LKFEEFEAKIPQTIYVSATPGDYELEQSGGNVVEQIIRPTGLL-----DPEIEVRPTKGQVDDLLSEIRKRVAKNERVLV 451 (663)
T ss_pred CCHHHHHHhcCCEEEEECCCChHHHHhccCceeEEeecCCCCC-----CCceeeecCCCcHHHHHHHHHHHHhcCCeEEE
Confidence 4566776667788889999987543332211112234477542 13344556677889999999999999999999
Q ss_pred EecchhhHHHHHHHHHHCCCCeEEeccCCcchhhHHHHHH--hcCCCccEEEEcCCCCCCccee
Q 002515 359 GSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVA--QAGRKYAITISTNMAGRGTDII 420 (913)
Q Consensus 359 ~t~Si~~SE~ls~~L~~~gi~~~vLnA~~k~~~~Ea~Iia--~AG~~G~VTIATnmAGRGTDIk 420 (913)
-|-++..||.|.+.|.+.||+...||...+-.+| .+||. +.| .-.|.|--|+.--|.||.
T Consensus 452 TtLTKkmAEdLT~Yl~e~gikv~YlHSdidTlER-~eIirdLR~G-~~DvLVGINLLREGLDiP 513 (663)
T COG0556 452 TTLTKKMAEDLTEYLKELGIKVRYLHSDIDTLER-VEIIRDLRLG-EFDVLVGINLLREGLDLP 513 (663)
T ss_pred EeehHHHHHHHHHHHHhcCceEEeeeccchHHHH-HHHHHHHhcC-CccEEEeehhhhccCCCc
Confidence 9999999999999999999999999986432232 35665 566 458999999999999994
No 150
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=93.30 E-value=5.8 Score=49.63 Aligned_cols=54 Identities=15% Similarity=0.279 Sum_probs=43.4
Q ss_pred eChhHHHHHHHHHHHHHHhcC----CcEEEEecchhhHHHHHHHHHHCCCCeEEeccC
Q 002515 333 ATARGKWEYARQEVESMFRLG----RPVLVGSTSVENSEYLSDLLKQQGIPHNVLNAR 386 (913)
Q Consensus 333 ~t~~~k~~aii~ei~~~~~~g----rPVLI~t~Si~~SE~ls~~L~~~gi~~~vLnA~ 386 (913)
.+..+....|++.|.+.+..| .-+-|.+++-..+..+...|.++|||+.+..+.
T Consensus 320 ~~~~~Ea~~ia~~I~~l~~~~~~~~~diAVL~R~~~~~~~l~~~L~~~gIP~~~~g~~ 377 (726)
T TIGR01073 320 DTERDEAQFVAGEIDKLVKNGERKYGDFAILYRTNAQSRVFEETLLKANIPYKIVGGL 377 (726)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCCcCCEEEEEeCchhHHHHHHHHHHcCCCEEEeCCc
Confidence 345556667888998887665 257888999999999999999999999887664
No 151
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=93.19 E-value=1.7 Score=46.96 Aligned_cols=141 Identities=21% Similarity=0.205 Sum_probs=78.8
Q ss_pred hhHHHHHHHHh-----cCCeEEecCCCchHHHHHHHHHHHHH-cCCcEEEEecCHHHHHHHHHHHHHH-hhhcCCeEEEE
Q 002515 5 DVQIIGGAVLH-----DGSIAEMKTGEGKTLVSTLAAYLNAL-TGEGVHVVTVNDYLAQRDAEWMERV-HRFLGLSVGLI 77 (913)
Q Consensus 5 dvQl~g~l~L~-----~G~IaEm~TGEGKTLva~lpa~l~AL-~G~~VhVvT~NdyLA~RDae~~~~~-y~~LGLsv~~i 77 (913)
++|.--+-.|. .+.+.||.+|||||-|. +|+...+| .|...-.+.+=.-|.++-++-+..- -..+|=.+-.+
T Consensus 26 ~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsVI-~Pmla~~LAdg~~LvrviVpk~Ll~q~~~~L~~~lg~l~~r~i~~l 104 (229)
T PF12340_consen 26 PVQVEIAREMISPPSGKNSVMQLNMGEGKTSVI-VPMLALALADGSRLVRVIVPKALLEQMRQMLRSRLGGLLNRRIYHL 104 (229)
T ss_pred HHHHHHHHHHhCCCCCCCeEeeecccCCccchH-HHHHHHHHcCCCcEEEEEcCHHHHHHHHHHHHHHHHHHhCCeeEEe
Confidence 45555444443 34599999999999753 34443455 4555555555567888887776643 34556666554
Q ss_pred cC----CCCHHH-H--Hhcc-----CCCeEEECCCcchhhHHH--Hhhc-cch---h-----hhhccCCCCceEEEeecc
Q 002515 78 QR----GMIPEE-R--RSNY-----RCDITYTNNSELGFDYLR--DNLA-ANS---E-----QLVMRWPKPFHFAIVDEV 134 (913)
Q Consensus 78 ~~----~~~~~~-r--~~aY-----~~DI~YgT~~e~~fDyLr--D~l~-~~~---~-----~~v~r~~R~~~~aIVDEv 134 (913)
.= ..+++. + +..| ...|+.+||..+---.|. +.+. ... . ...+. ...--|+||.
T Consensus 105 pFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~L~~le~l~~~~~~~~~~l~~~q~~l~---~~~rdilDEs 181 (229)
T PF12340_consen 105 PFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFKLKGLERLQDGKPEEARELLKIQKWLD---EHSRDILDES 181 (229)
T ss_pred cccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH---hcCCeEeECc
Confidence 21 122221 1 1111 348999999865311111 1111 111 0 11122 3444799999
Q ss_pred hhhhhccCCCceeccCC
Q 002515 135 DSVLIDEGRNPLLISGE 151 (913)
Q Consensus 135 DsiLiDea~tPLiiSg~ 151 (913)
|-+|- .++-||.+..
T Consensus 182 De~L~--~k~qLiY~~G 196 (229)
T PF12340_consen 182 DEILS--VKYQLIYTMG 196 (229)
T ss_pred hhccC--cceEEEecCC
Confidence 99984 7888888643
No 152
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=93.08 E-value=0.29 Score=60.12 Aligned_cols=131 Identities=27% Similarity=0.414 Sum_probs=85.0
Q ss_pred hhHHHHHHH---HhcCC---eEEecCCCchHH-HHHHHHHHHHHcCCcEE-EEecCHHHHHHHHHHHHHHhhhc-CCeEE
Q 002515 5 DVQIIGGAV---LHDGS---IAEMKTGEGKTL-VSTLAAYLNALTGEGVH-VVTVNDYLAQRDAEWMERVHRFL-GLSVG 75 (913)
Q Consensus 5 dvQl~g~l~---L~~G~---IaEm~TGEGKTL-va~lpa~l~AL~G~~Vh-VvT~NdyLA~RDae~~~~~y~~L-GLsv~ 75 (913)
|-|++|.=- |++.. |.-=.-|=|||+ |.++.|||.-..-.|-| ||+|+.-|- .|.+.|-+|. .|+|-
T Consensus 402 dYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQvIaFlayLkq~g~~gpHLVVvPsSTle----NWlrEf~kwCPsl~Ve 477 (941)
T KOG0389|consen 402 DYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQVIAFLAYLKQIGNPGPHLVVVPSSTLE----NWLREFAKWCPSLKVE 477 (941)
T ss_pred chhhhhHHHHHHHHHccccceehhhccCcchhHHHHHHHHHHHcCCCCCcEEEecchhHH----HHHHHHHHhCCceEEE
Confidence 568998753 33322 443455999998 78888887766556666 778888886 4999999998 47877
Q ss_pred EEcCCCCHHHHHhc-c-------CCCeEEECCCcchhhHHHHhhccchhh-hhccCCCCceEEEeecchhhhhcc-----
Q 002515 76 LIQRGMIPEERRSN-Y-------RCDITYTNNSELGFDYLRDNLAANSEQ-LVMRWPKPFHFAIVDEVDSVLIDE----- 141 (913)
Q Consensus 76 ~i~~~~~~~~r~~a-Y-------~~DI~YgT~~e~~fDyLrD~l~~~~~~-~v~r~~R~~~~aIVDEvDsiLiDe----- 141 (913)
..+|.. ++|+.. + .-||..+|=+=+ ..++++ .++| ..+|+|||.||.|- |=+.
T Consensus 478 ~YyGSq--~ER~~lR~~i~~~~~~ydVllTTY~la---------~~~kdDRsflk-~~~~n~viyDEgHm-LKN~~SeRy 544 (941)
T KOG0389|consen 478 PYYGSQ--DERRELRERIKKNKDDYDVLLTTYNLA---------ASSKDDRSFLK-NQKFNYVIYDEGHM-LKNRTSERY 544 (941)
T ss_pred eccCcH--HHHHHHHHHHhccCCCccEEEEEeecc---------cCChHHHHHHH-hccccEEEecchhh-hhccchHHH
Confidence 777654 444321 1 247887774322 223333 3444 34899999999983 3222
Q ss_pred -------CCCceeccCCC
Q 002515 142 -------GRNPLLISGEA 152 (913)
Q Consensus 142 -------a~tPLiiSg~~ 152 (913)
|+..|.++|.+
T Consensus 545 ~~LM~I~An~RlLLTGTP 562 (941)
T KOG0389|consen 545 KHLMSINANFRLLLTGTP 562 (941)
T ss_pred HHhccccccceEEeeCCc
Confidence 45567777753
No 153
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=92.60 E-value=0.36 Score=55.93 Aligned_cols=56 Identities=18% Similarity=0.281 Sum_probs=39.0
Q ss_pred EEecCCCchHHHHHHHHHHHHH----cCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEE
Q 002515 20 AEMKTGEGKTLVSTLAAYLNAL----TGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGL 76 (913)
Q Consensus 20 aEm~TGEGKTLva~lpa~l~AL----~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLsv~~ 76 (913)
.-=.||.|||.+++=.|....+ .|+.|+++|.+.|=+. -.+++..+.+.+|+.+.+
T Consensus 179 lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~a-a~eQL~~~a~~lgvpv~~ 238 (388)
T PRK12723 179 LVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIG-AKKQIQTYGDIMGIPVKA 238 (388)
T ss_pred EECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHH-HHHHHHHHhhcCCcceEe
Confidence 3447999999876644433343 4789999999998332 345577777889988754
No 154
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=92.44 E-value=0.35 Score=54.89 Aligned_cols=49 Identities=20% Similarity=0.135 Sum_probs=36.2
Q ss_pred eEEecCCCchHHHHHHHHHHH--HHcCCcEEEEecCHHHHHHHHHHHHHHh
Q 002515 19 IAEMKTGEGKTLVSTLAAYLN--ALTGEGVHVVTVNDYLAQRDAEWMERVH 67 (913)
Q Consensus 19 IaEm~TGEGKTLva~lpa~l~--AL~G~~VhVvT~NdyLA~RDae~~~~~y 67 (913)
|++=.-|+|||+++.-.+... .-.|..+.++|+|.-|..--.+.+..-+
T Consensus 5 ~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n~~l~~~l~~~l~~~~ 55 (352)
T PF09848_consen 5 LITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGNHPLRNKLREQLAKKY 55 (352)
T ss_pred EEEecCCcCHHHHHHHHHHHhhccccCCceEEEEecchHHHHHHHHHhhhc
Confidence 344457999999888777644 4568899999999999886665555444
No 155
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=92.44 E-value=0.18 Score=47.79 Aligned_cols=104 Identities=22% Similarity=0.257 Sum_probs=52.1
Q ss_pred eEEecCCCchHHHHHHHHHHHHH---cCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHHhccCCCeE
Q 002515 19 IAEMKTGEGKTLVSTLAAYLNAL---TGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNYRCDIT 95 (913)
Q Consensus 19 IaEm~TGEGKTLva~lpa~l~AL---~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLsv~~i~~~~~~~~r~~aY~~DI~ 95 (913)
++-=.+|.|||.++.--+.-... ......++..+---...-......+...+|.....
T Consensus 8 ~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~------------------- 68 (131)
T PF13401_consen 8 VISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS------------------- 68 (131)
T ss_dssp EEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS-------------------
T ss_pred EEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc-------------------
Confidence 45567999999765544432221 11134444332222222234466777777765331
Q ss_pred EECCCcchhhHHHHhhccchhhhhccCCCCceEEEeecchhh-----------hhccCCCceeccCCC
Q 002515 96 YTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV-----------LIDEGRNPLLISGEA 152 (913)
Q Consensus 96 YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsi-----------LiDea~tPLiiSg~~ 152 (913)
....+.|.+.+... .-.+ +..++||||+|.+ |.|+...++|++|.+
T Consensus 69 -----~~~~~~l~~~~~~~---l~~~---~~~~lviDe~~~l~~~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 69 -----RQTSDELRSLLIDA---LDRR---RVVLLVIDEADHLFSDEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp -----TS-HHHHHHHHHHH---HHHC---TEEEEEEETTHHHHTHHHHHHHHHHTCSCBEEEEEEESS
T ss_pred -----cCCHHHHHHHHHHH---HHhc---CCeEEEEeChHhcCCHHHHHHHHHHHhCCCCeEEEEECh
Confidence 11122333333321 1112 3479999999997 556556666666654
No 156
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=91.82 E-value=18 Score=45.20 Aligned_cols=60 Identities=18% Similarity=0.196 Sum_probs=45.7
Q ss_pred ChhHHHHHHHHHHHHHHhcCC---cEEEEecchhhHHHHHHHHHHCCCCeEEeccCCcchhhH
Q 002515 334 TARGKWEYARQEVESMFRLGR---PVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAARE 393 (913)
Q Consensus 334 t~~~k~~aii~ei~~~~~~gr---PVLI~t~Si~~SE~ls~~L~~~gi~~~vLnA~~k~~~~E 393 (913)
+..+--..|+++|.+.++.|. -+.|.+++-..+..+...|.++|||+.+..+..-+...|
T Consensus 320 ~~~~Ea~~ia~~I~~l~~~g~~~~diAVL~R~~~~~~~le~~L~~~gIPy~~~g~~~f~~~~e 382 (715)
T TIGR01075 320 NELDEARFVVSRIKTWQRNGGALDECAVLYRSNAQSRVLEEALLQASIPYRIYGGMRFFERQE 382 (715)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCccCEEEEEecCchHHHHHHHHHHcCCCEEEeCCccccccHH
Confidence 344455678889988877664 378889999999999999999999999886643233444
No 157
>PRK10536 hypothetical protein; Provisional
Probab=91.26 E-value=2.8 Score=46.25 Aligned_cols=65 Identities=22% Similarity=0.179 Sum_probs=39.0
Q ss_pred HHHHHHHHhcCC--eEEecCCCchHHHHHHHHHHHHH-cCCcEEEEecCHH-------------HHHHHHHHHHHHhhhc
Q 002515 7 QIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNAL-TGEGVHVVTVNDY-------------LAQRDAEWMERVHRFL 70 (913)
Q Consensus 7 Ql~g~l~L~~G~--IaEm~TGEGKTLva~lpa~l~AL-~G~~VhVvT~Ndy-------------LA~RDae~~~~~y~~L 70 (913)
|....-+|.++. ++.=.+|.|||+.+...+. .+| .|.---|+-++.. +.+--.-||+|+|+.|
T Consensus 64 Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~-~~l~~~~~~kIiI~RP~v~~ge~LGfLPG~~~eK~~p~~~pi~D~L 142 (262)
T PRK10536 64 QAHYLKAIESKQLIFATGEAGCGKTWISAAKAA-EALIHKDVDRIIVTRPVLQADEDLGFLPGDIAEKFAPYFRPVYDVL 142 (262)
T ss_pred HHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHH-HHHhcCCeeEEEEeCCCCCchhhhCcCCCCHHHHHHHHHHHHHHHH
Confidence 444444556666 4556899999987766665 444 4432223334443 3444456888898877
Q ss_pred CC
Q 002515 71 GL 72 (913)
Q Consensus 71 GL 72 (913)
.-
T Consensus 143 ~~ 144 (262)
T PRK10536 143 VR 144 (262)
T ss_pred HH
Confidence 54
No 158
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=91.16 E-value=0.15 Score=59.67 Aligned_cols=120 Identities=20% Similarity=0.282 Sum_probs=74.8
Q ss_pred HHHHHHHHh-cCC----eEEecCCCchHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCC
Q 002515 7 QIIGGAVLH-DGS----IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGM 81 (913)
Q Consensus 7 Ql~g~l~L~-~G~----IaEm~TGEGKTLva~lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLsv~~i~~~~ 81 (913)
|-.+.--|+ +|+ |+-..-|.|||||-+-++. --.|.|.|++.|..=.. .|-.+|..|-.+.-..|..=
T Consensus 307 QEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~---tikK~clvLcts~VSVe---QWkqQfk~wsti~d~~i~rF- 379 (776)
T KOG1123|consen 307 QEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAAC---TIKKSCLVLCTSAVSVE---QWKQQFKQWSTIQDDQICRF- 379 (776)
T ss_pred HHHHHHHHhCCCcccCceEEEecCCCCceeeeeeee---eecccEEEEecCccCHH---HHHHHHHhhcccCccceEEe-
Confidence 555555554 465 8889999999998665543 34578999988876555 47777777777765443321
Q ss_pred CHHHH-HhccCCCeEEECCCcchhhHHHHhhccchhhh---hccCCCCceEEEeecchhhh
Q 002515 82 IPEER-RSNYRCDITYTNNSELGFDYLRDNLAANSEQL---VMRWPKPFHFAIVDEVDSVL 138 (913)
Q Consensus 82 ~~~~r-~~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~---v~r~~R~~~~aIVDEvDsiL 138 (913)
+++.+ +.--+|+|+.+|-+=+++--=|.. . .+. .++ .|.-.++|+||||.|-
T Consensus 380 Tsd~Ke~~~~~~gvvvsTYsMva~t~kRS~--e--aek~m~~l~-~~EWGllllDEVHvvP 435 (776)
T KOG1123|consen 380 TSDAKERFPSGAGVVVTTYSMVAYTGKRSH--E--AEKIMDFLR-GREWGLLLLDEVHVVP 435 (776)
T ss_pred eccccccCCCCCcEEEEeeehhhhcccccH--H--HHHHHHHHh-cCeeeeEEeehhccch
Confidence 11111 133468999999776543211111 0 111 222 3578999999999873
No 159
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=91.11 E-value=0.76 Score=58.53 Aligned_cols=36 Identities=31% Similarity=0.191 Sum_probs=25.4
Q ss_pred eEEecCCCchHHHHHHHH-HHHHHcCCc-EEEEecCHH
Q 002515 19 IAEMKTGEGKTLVSTLAA-YLNALTGEG-VHVVTVNDY 54 (913)
Q Consensus 19 IaEm~TGEGKTLva~lpa-~l~AL~G~~-VhVvT~Ndy 54 (913)
..+|.||.|||.|++-.+ .|+...|.. +.||+|+..
T Consensus 63 ~~~M~TGtGKT~~~~~~i~~l~~~~~~~~fii~vp~~a 100 (986)
T PRK15483 63 DIKMETGTGKTYVYTRLMYELHQKYGLFKFIIVVPTPA 100 (986)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHHHcCCcEEEEEeCCHH
Confidence 689999999999866554 356666655 556666643
No 160
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=90.76 E-value=1 Score=57.99 Aligned_cols=108 Identities=19% Similarity=0.103 Sum_probs=71.1
Q ss_pred CeEEecCCCchHHHHHHHHHHHH-Hc-CCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHHhcc--CCC
Q 002515 18 SIAEMKTGEGKTLVSTLAAYLNA-LT-GEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNY--RCD 93 (913)
Q Consensus 18 ~IaEm~TGEGKTLva~lpa~l~A-L~-G~~VhVvT~NdyLA~RDae~~~~~y~~LGLsv~~i~~~~~~~~r~~aY--~~D 93 (913)
-++.=-||+|||++....|-+.. +. -..|.+||==.-|-.|-.+.+..+-....... ......+-|+..- ...
T Consensus 276 G~IWHtqGSGKTlTm~~~A~~l~~~~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~---~~~s~~~Lk~~l~~~~~~ 352 (962)
T COG0610 276 GYIWHTQGSGKTLTMFKLARLLLELPKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP---KAESTSELKELLEDGKGK 352 (962)
T ss_pred eEEEeecCCchHHHHHHHHHHHHhccCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcc---cccCHHHHHHHHhcCCCc
Confidence 48888999999998777775322 32 34788888888999998888888877666544 2222333333222 247
Q ss_pred eEEECCCcchhhHHHHhhccchhhhhccCCCCceEEEeecchh
Q 002515 94 ITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDS 136 (913)
Q Consensus 94 I~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs 136 (913)
|+.+|.--|++.-.-+ .+ ....+ .--++|+||||+
T Consensus 353 ii~TTIQKf~~~~~~~----~~-~~~~~---~~ivvI~DEaHR 387 (962)
T COG0610 353 IIVTTIQKFNKAVKED----EL-ELLKR---KNVVVIIDEAHR 387 (962)
T ss_pred EEEEEecccchhhhcc----cc-cccCC---CcEEEEEechhh
Confidence 9999998865332211 01 11223 778999999998
No 161
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=89.47 E-value=7.6 Score=48.82 Aligned_cols=70 Identities=23% Similarity=0.266 Sum_probs=53.3
Q ss_pred HHHHHHhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEeccCCcchhhHHHHHHhcCCCccEEEEcCCCCCCccee
Q 002515 345 EVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQAGRKYAITISTNMAGRGTDII 420 (913)
Q Consensus 345 ei~~~~~~grPVLI~t~Si~~SE~ls~~L~~~gi~~~vLnA~~k~~~~Ea~Iia~AG~~G~VTIATnmAGRGTDIk 420 (913)
++......|.-|-||+.|+..++.+++..+..+-..-++|...+. + ++ +-...-.|.|=|..-.=|.++.
T Consensus 274 ~L~~~L~~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~---~-dv--~~W~~~~VviYT~~itvG~Sf~ 343 (824)
T PF02399_consen 274 ELLARLNAGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKL---E-DV--ESWKKYDVVIYTPVITVGLSFE 343 (824)
T ss_pred HHHHHHhCCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCc---c-cc--ccccceeEEEEeceEEEEeccc
Confidence 334445788999999999999999999998888788888885322 2 22 2255678889999988898874
No 162
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=89.14 E-value=0.91 Score=56.46 Aligned_cols=136 Identities=15% Similarity=0.168 Sum_probs=79.0
Q ss_pred hhHHhhcCcccccCCCcccHHHHHHHHhCCCeE--EeCCC-CCc-cc-----ccCCC-----eEEe--ChhHHHHHHHHH
Q 002515 282 QSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPVI--EVPTN-LPN-IR-----VDLPI-----QSFA--TARGKWEYARQE 345 (913)
Q Consensus 282 q~~F~~Y~kL~GmTGTa~te~~Ef~~iY~l~vv--~IPt~-~p~-~R-----~d~~d-----~v~~--t~~~k~~aii~e 345 (913)
+.++.....+.-|+||+.. ...|.+..|++.. ..++| .|. .+ .+-|+ .-|. +..+-+..+.+.
T Consensus 435 ~~i~~~~~svil~SgTL~p-~~~~~~~Lg~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~r~~~~~~~~l~~~ 513 (705)
T TIGR00604 435 KPLFERVRSVILASGTLSP-LDAFPRNLGFNPVSQDSPTHILKRENLLTLIVTRGSDQVPLSSTFEIRNDPSLVRNLGEL 513 (705)
T ss_pred HHHHHhcCEEEEecccCCc-HHHHHHHhCCCCccceecCcccchHHeEEEEEeeCCCCCeeeeehhccCCHHHHHHHHHH
Confidence 5666777889999999976 3347777776421 12222 121 10 11111 1122 223445666666
Q ss_pred HHHHHh-cCCcEEEEecchhhHHHHHHHHHHCCCC------eEEeccCCcchhhHHHHHH---h---cCCCccEEEEc--
Q 002515 346 VESMFR-LGRPVLVGSTSVENSEYLSDLLKQQGIP------HNVLNARPKYAAREAETVA---Q---AGRKYAITIST-- 410 (913)
Q Consensus 346 i~~~~~-~grPVLI~t~Si~~SE~ls~~L~~~gi~------~~vLnA~~k~~~~Ea~Iia---~---AG~~G~VTIAT-- 410 (913)
|.+..+ ..-.||||++|-..-+.+.+.+...|+- ..++--...-.+.+ .++. + .| .|+|..|+
T Consensus 514 i~~~~~~~pgg~lvfFpSy~~l~~v~~~~~~~~~~~~i~~~k~i~~E~~~~~~~~-~~l~~f~~~~~~~-~gavL~av~g 591 (705)
T TIGR00604 514 LVEFSKIIPDGIVVFFPSYSYLENIVSTWKEMGILENIEKKKLIFVETKDAQETS-DALERYKQAVSEG-RGAVLLSVAG 591 (705)
T ss_pred HHHHhhcCCCcEEEEccCHHHHHHHHHHHHhcCHHHHHhcCCCEEEeCCCcchHH-HHHHHHHHHHhcC-CceEEEEecC
Confidence 655543 4568999999999999999888776531 12332211111222 2222 1 23 58899999
Q ss_pred CCCCCCccee
Q 002515 411 NMAGRGTDII 420 (913)
Q Consensus 411 nmAGRGTDIk 420 (913)
.-..=|+|+.
T Consensus 592 Gk~sEGIDf~ 601 (705)
T TIGR00604 592 GKVSEGIDFC 601 (705)
T ss_pred CcccCccccC
Confidence 7789999997
No 163
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=88.38 E-value=4 Score=50.45 Aligned_cols=61 Identities=15% Similarity=-0.003 Sum_probs=42.3
Q ss_pred hhHHHHHHHHhcC---CeEEecCCCchHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHH
Q 002515 5 DVQIIGGAVLHDG---SIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMER 65 (913)
Q Consensus 5 dvQl~g~l~L~~G---~IaEm~TGEGKTLva~lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~ 65 (913)
+-|..+....+.. -+++=..|.|||-+++-.+......|..|.|++++..-+..-.+.+..
T Consensus 160 ~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~~~~g~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 160 ESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQLVKRGLRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred HHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCcHHHHHHHHHHHHh
Confidence 4566666655543 378888999999766555443345689999999998777666665544
No 164
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=87.67 E-value=1.2 Score=57.33 Aligned_cols=102 Identities=18% Similarity=0.283 Sum_probs=77.7
Q ss_pred eEEecCCCchHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHH-HHHHHhhhcCCeEEEEcCCCCHHHHHhccCCCeEEE
Q 002515 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAE-WMERVHRFLGLSVGLIQRGMIPEERRSNYRCDITYT 97 (913)
Q Consensus 19 IaEm~TGEGKTLva~lpa~l~AL~G~~VhVvT~NdyLA~RDae-~~~~~y~~LGLsv~~i~~~~~~~~r~~aY~~DI~Yg 97 (913)
++-..||+|||.+|=++.. +--.-..++=++|+...|..-+. |-+.|-..+|+.+.-..+.. ....+..-..+|..+
T Consensus 1163 ~vga~~gsgkt~~ae~a~l-~~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~G~~~~~l~ge~-s~~lkl~~~~~vii~ 1240 (1674)
T KOG0951|consen 1163 LVGAPNGSGKTACAELALL-RPDTIGRAVYIAPLEEIADEQYRDWEKKFSKLLGLRIVKLTGET-SLDLKLLQKGQVIIS 1240 (1674)
T ss_pred EEecCCCCchhHHHHHHhc-CCccceEEEEecchHHHHHHHHHHHHHhhccccCceEEecCCcc-ccchHHhhhcceEEe
Confidence 7889999999999877664 32222367889999999987765 67778788999988776654 345666777899999
Q ss_pred CCCcchhhHHHHhhccchhhhhccCCCCceEEEeecchhh
Q 002515 98 NNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV 137 (913)
Q Consensus 98 T~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsi 137 (913)
|+.. ||-|+ -+| ..++-|+||.|-+
T Consensus 1241 tpe~--~d~lq---------~iQ----~v~l~i~d~lh~i 1265 (1674)
T KOG0951|consen 1241 TPEQ--WDLLQ---------SIQ----QVDLFIVDELHLI 1265 (1674)
T ss_pred chhH--HHHHh---------hhh----hcceEeeehhhhh
Confidence 9987 67663 234 6889999998864
No 165
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=87.41 E-value=2 Score=45.06 Aligned_cols=56 Identities=27% Similarity=0.374 Sum_probs=39.1
Q ss_pred cCCCchHHH-HHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCC
Q 002515 23 KTGEGKTLV-STLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRG 80 (913)
Q Consensus 23 ~TGEGKTLv-a~lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLsv~~i~~~ 80 (913)
.||.|||-+ +=|+++ ..+.|++|-++|.-.|=+- -.++++.+.+.+|+.+......
T Consensus 9 ptGvGKTTt~aKLAa~-~~~~~~~v~lis~D~~R~g-a~eQL~~~a~~l~vp~~~~~~~ 65 (196)
T PF00448_consen 9 PTGVGKTTTIAKLAAR-LKLKGKKVALISADTYRIG-AVEQLKTYAEILGVPFYVARTE 65 (196)
T ss_dssp STTSSHHHHHHHHHHH-HHHTT--EEEEEESTSSTH-HHHHHHHHHHHHTEEEEESSTT
T ss_pred CCCCchHhHHHHHHHH-HhhccccceeecCCCCCcc-HHHHHHHHHHHhccccchhhcc
Confidence 599999975 555555 5666999999998655322 3467888999999998765433
No 166
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=87.36 E-value=2.6 Score=46.51 Aligned_cols=53 Identities=25% Similarity=0.192 Sum_probs=36.9
Q ss_pred ecCCCchHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEE
Q 002515 22 MKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVG 75 (913)
Q Consensus 22 m~TGEGKTLva~lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLsv~ 75 (913)
=.||+|||.+++-.|...+-.|+.|.+++...|=+ ...+++....+..|+.+-
T Consensus 79 G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~-~a~~ql~~~~~~~~i~~~ 131 (272)
T TIGR00064 79 GVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRA-AAIEQLEEWAKRLGVDVI 131 (272)
T ss_pred CCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCH-HHHHHHHHHHHhCCeEEE
Confidence 48999999765555554577899999999765422 224566667777786654
No 167
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=87.03 E-value=2.4 Score=50.04 Aligned_cols=150 Identities=23% Similarity=0.256 Sum_probs=92.0
Q ss_pred eEEEEeCCCCccccCcccChhhhHHHHhHhCCcccCCceeeeeeeehhHHhhcCcccccCCCcccHHHHHHHHhC-CCeE
Q 002515 236 KALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQ-MPVI 314 (913)
Q Consensus 236 ~V~iVD~~TGR~~~gr~ws~GLHQaieaKEgv~i~~e~~t~a~IT~q~~F~~Y~kL~GmTGTa~te~~Ef~~iY~-l~vv 314 (913)
+|+|+|+..-|....-...+=|.+.+..+-.+ |+.-||.|+. +.-|+..|+ .+++
T Consensus 161 ~viiLDeahERtlATDiLmGllk~v~~~rpdL----------------------k~vvmSatl~--a~Kfq~yf~n~Pll 216 (699)
T KOG0925|consen 161 GVIILDEAHERTLATDILMGLLKEVVRNRPDL----------------------KLVVMSATLD--AEKFQRYFGNAPLL 216 (699)
T ss_pred cEEEechhhhhhHHHHHHHHHHHHHHhhCCCc----------------------eEEEeecccc--hHHHHHHhCCCCee
Confidence 57889986666555444444455555544333 4677888885 566887765 5789
Q ss_pred EeCCCCCcccccCCCeEEeC--hhHHHHHHHHHHHHHHhcCC--cEEEEecchhhHHHHHHHHHHC-------CCCeEEe
Q 002515 315 EVPTNLPNIRVDLPIQSFAT--ARGKWEYARQEVESMFRLGR--PVLVGSTSVENSEYLSDLLKQQ-------GIPHNVL 383 (913)
Q Consensus 315 ~IPt~~p~~R~d~~d~v~~t--~~~k~~aii~ei~~~~~~gr--PVLI~t~Si~~SE~ls~~L~~~-------gi~~~vL 383 (913)
.||.-.|+-+ +|.. +.+.++|.+.-|.+.|..+- -||||-..-++-|...+.+... +-|..|+
T Consensus 217 ~vpg~~PvEi------~Yt~e~erDylEaairtV~qih~~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~ 290 (699)
T KOG0925|consen 217 AVPGTHPVEI------FYTPEPERDYLEAAIRTVLQIHMCEEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVV 290 (699)
T ss_pred ecCCCCceEE------EecCCCChhHHHHHHHHHHHHHhccCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEE
Confidence 9997556533 4443 34566888999988885553 5999999998877666666532 2233333
Q ss_pred ccCCcchhh--HHHHHHhcCCCc-cEEEEcCCCCC
Q 002515 384 NARPKYAAR--EAETVAQAGRKY-AITISTNMAGR 415 (913)
Q Consensus 384 nA~~k~~~~--Ea~Iia~AG~~G-~VTIATnmAGR 415 (913)
--.|++..+ |+.=..+-|..| .|.|+||+|-=
T Consensus 291 PLyP~~qq~iFep~p~~~~~~~~RkvVvstniaet 325 (699)
T KOG0925|consen 291 PLYPAQQQRIFEPAPEKRNGAYGRKVVVSTNIAET 325 (699)
T ss_pred ecCchhhccccCCCCcccCCCccceEEEEecchhe
Confidence 222322222 222122334444 78999999863
No 168
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=87.00 E-value=3.7 Score=48.33 Aligned_cols=82 Identities=16% Similarity=0.087 Sum_probs=53.8
Q ss_pred cCCCchHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHH-HH------hccCCC-e
Q 002515 23 KTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEE-RR------SNYRCD-I 94 (913)
Q Consensus 23 ~TGEGKTLva~lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLsv~~i~~~~~~~~-r~------~aY~~D-I 94 (913)
.+|.|||.+++-.|+...-.|+.|.+|+.-.|=+ --.+|++..-+..|+.+-......+|.. .+ ..-.+| |
T Consensus 108 ~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~-aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~~~~~DvV 186 (429)
T TIGR01425 108 LQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRA-GAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFKKENFDII 186 (429)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccch-hHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHHhCCCCEE
Confidence 5999998765544444567799999999876654 3446777777888888765554444311 11 112466 6
Q ss_pred EEECCCcchhh
Q 002515 95 TYTNNSELGFD 105 (913)
Q Consensus 95 ~YgT~~e~~fD 105 (913)
++=|+++...|
T Consensus 187 iIDTaGr~~~d 197 (429)
T TIGR01425 187 IVDTSGRHKQE 197 (429)
T ss_pred EEECCCCCcch
Confidence 66789887765
No 169
>PF13245 AAA_19: Part of AAA domain
Probab=86.69 E-value=1.9 Score=38.57 Aligned_cols=45 Identities=27% Similarity=0.249 Sum_probs=33.3
Q ss_pred eEEecCCCchH-HHHHHHHHHHH-Hc--CCcEEEEecCHHHHHHHHHHH
Q 002515 19 IAEMKTGEGKT-LVSTLAAYLNA-LT--GEGVHVVTVNDYLAQRDAEWM 63 (913)
Q Consensus 19 IaEm~TGEGKT-Lva~lpa~l~A-L~--G~~VhVvT~NdyLA~RDae~~ 63 (913)
+++-.-|+||| +++-+.+++.+ .. |+.|.|+|+|...+.+-.+.+
T Consensus 14 vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 14 VVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHHHHHHHH
Confidence 45899999999 44444444322 11 889999999999999777777
No 170
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=86.48 E-value=0.85 Score=54.23 Aligned_cols=51 Identities=24% Similarity=0.195 Sum_probs=39.7
Q ss_pred hcCC---eEEecCCCchHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhh
Q 002515 15 HDGS---IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHR 68 (913)
Q Consensus 15 ~~G~---IaEm~TGEGKTLva~lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~ 68 (913)
.+|. +.-=.||+|||.+ |+-.+ |=.+++..|+.+|.-||.|=+.+|+.||-
T Consensus 29 ~~g~~~QtLLGvTGSGKTfT--~AnVI-~~~~rPtLV~AhNKTLAaQLy~Efk~fFP 82 (663)
T COG0556 29 ENGLKHQTLLGVTGSGKTFT--MANVI-AKVQRPTLVLAHNKTLAAQLYSEFKEFFP 82 (663)
T ss_pred hcCceeeEEeeeccCCchhH--HHHHH-HHhCCCeEEEecchhHHHHHHHHHHHhCc
Confidence 4555 4445799999965 44432 45678999999999999999999999984
No 171
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=86.45 E-value=2.4 Score=49.94 Aligned_cols=51 Identities=20% Similarity=0.264 Sum_probs=35.7
Q ss_pred cCCCchHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeE
Q 002515 23 KTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSV 74 (913)
Q Consensus 23 ~TGEGKTLva~lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLsv 74 (913)
.||+|||.+++-.|...+-.|+.|.+|+...|=+ .-.+.+..+.+.+|+.+
T Consensus 103 ~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~-aa~eQL~~la~~~gvp~ 153 (437)
T PRK00771 103 LQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRP-AAYDQLKQLAEKIGVPF 153 (437)
T ss_pred CCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCH-HHHHHHHHHHHHcCCcE
Confidence 6999999876655544456789999999876633 23455666677777664
No 172
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=86.08 E-value=3.2 Score=43.36 Aligned_cols=58 Identities=19% Similarity=0.111 Sum_probs=37.0
Q ss_pred hhHHHHHHHH-hcC-C--eEEecCCCchHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHH
Q 002515 5 DVQIIGGAVL-HDG-S--IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEW 62 (913)
Q Consensus 5 dvQl~g~l~L-~~G-~--IaEm~TGEGKTLva~lpa~l~AL~G~~VhVvT~NdyLA~RDae~ 62 (913)
+-|.-+.-.+ ..+ + +++=.-|.|||-+....+-...-.|..|.+++|+.-.|.+=.+.
T Consensus 4 ~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~ 65 (196)
T PF13604_consen 4 EEQREAVRAILTSGDRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELREK 65 (196)
T ss_dssp HHHHHHHHHHHHCTCSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHHh
Confidence 3465566555 344 2 67788999999754433322334589999999999988875444
No 173
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=85.59 E-value=3.4 Score=52.31 Aligned_cols=115 Identities=17% Similarity=0.183 Sum_probs=77.0
Q ss_pred eEEecCCCchHHH--HHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEE-EcCCCCHHHHHhccCCCeE
Q 002515 19 IAEMKTGEGKTLV--STLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGL-IQRGMIPEERRSNYRCDIT 95 (913)
Q Consensus 19 IaEm~TGEGKTLv--a~lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLsv~~-i~~~~~~~~r~~aY~~DI~ 95 (913)
++-+.|-.|||-+ +++=..|.--.-.-|.-|.|++.|-.+++..+-.-|+.--+..|. ..+.++.+=+....+|.|.
T Consensus 530 vIVAPTSaGKTfisfY~iEKVLResD~~VVIyvaPtKaLVnQvsa~VyaRF~~~t~~rg~sl~g~ltqEYsinp~nCQVL 609 (1330)
T KOG0949|consen 530 VIVAPTSAGKTFISFYAIEKVLRESDSDVVIYVAPTKALVNQVSANVYARFDTKTFLRGVSLLGDLTQEYSINPWNCQVL 609 (1330)
T ss_pred EEEeeccCCceeccHHHHHHHHhhcCCCEEEEecchHHHhhhhhHHHHHhhccCccccchhhHhhhhHHhcCCchhceEE
Confidence 7888999999986 455555444444556668999999999998887766443333332 4466777666667889999
Q ss_pred EECCCcchhhHHHHhhccch-hhhhccCCCCceEEEeecchhhhhcc
Q 002515 96 YTNNSELGFDYLRDNLAANS-EQLVMRWPKPFHFAIVDEVDSVLIDE 141 (913)
Q Consensus 96 YgT~~e~~fDyLrD~l~~~~-~~~v~r~~R~~~~aIVDEvDsiLiDe 141 (913)
.+-+.= |.-.|...| -..... ..+|+|.||||++=-.+
T Consensus 610 ITvPec-----leslLlspp~~q~~ce---rIRyiIfDEVH~iG~~e 648 (1330)
T KOG0949|consen 610 ITVPEC-----LESLLLSPPHHQKFCE---RIRYIIFDEVHLIGNEE 648 (1330)
T ss_pred EEchHH-----HHHHhcCchhhhhhhh---cceEEEechhhhccccc
Confidence 877753 322233221 122333 68999999999875433
No 174
>PRK14974 cell division protein FtsY; Provisional
Probab=84.90 E-value=2.3 Score=48.55 Aligned_cols=55 Identities=25% Similarity=0.204 Sum_probs=35.6
Q ss_pred EecCCCchHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEE
Q 002515 21 EMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGL 76 (913)
Q Consensus 21 Em~TGEGKTLva~lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLsv~~ 76 (913)
-=.+|.|||.+..-.+....-.|+.|.+++..-|=+ --.+++......+|+.+..
T Consensus 146 ~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~-~a~eqL~~~a~~lgv~v~~ 200 (336)
T PRK14974 146 VGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRA-GAIEQLEEHAERLGVKVIK 200 (336)
T ss_pred EcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcH-HHHHHHHHHHHHcCCceec
Confidence 336999999765544443445678898888664422 1234666677788887653
No 175
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=84.83 E-value=2.9 Score=44.51 Aligned_cols=46 Identities=24% Similarity=0.237 Sum_probs=25.9
Q ss_pred HHHHHHHHhcCC--eEEecCCCchHHHHHHHHHHHHHcCC--cEEEEecC
Q 002515 7 QIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALTGE--GVHVVTVN 52 (913)
Q Consensus 7 Ql~g~l~L~~G~--IaEm~TGEGKTLva~lpa~l~AL~G~--~VhVvT~N 52 (913)
|-...=+|.+.. ++.=..|+|||+.|+-.|.-....|+ ++-++-|+
T Consensus 9 Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~ 58 (205)
T PF02562_consen 9 QKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPP 58 (205)
T ss_dssp HHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S
T ss_pred HHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecC
Confidence 444444555544 67788999999987777753344454 44444443
No 176
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=84.81 E-value=2.1 Score=47.37 Aligned_cols=52 Identities=29% Similarity=0.357 Sum_probs=33.3
Q ss_pred cCCCchHHHHHHHHHHHHHc-C-CcEEEEecCHHHHHHHHHHHHHHhhhcCCeEE
Q 002515 23 KTGEGKTLVSTLAAYLNALT-G-EGVHVVTVNDYLAQRDAEWMERVHRFLGLSVG 75 (913)
Q Consensus 23 ~TGEGKTLva~lpa~l~AL~-G-~~VhVvT~NdyLA~RDae~~~~~y~~LGLsv~ 75 (913)
.||.|||.+++-.+...+.. | +.|.+||...|=+.- .+.+..+-+.+|+.+.
T Consensus 202 ptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a-~eql~~~~~~~~~p~~ 255 (282)
T TIGR03499 202 PTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGA-VEQLKTYAKILGVPVK 255 (282)
T ss_pred CCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhH-HHHHHHHHHHhCCcee
Confidence 59999997655555445665 5 899999987764321 3444444556676654
No 177
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=84.58 E-value=2.8 Score=42.23 Aligned_cols=53 Identities=23% Similarity=0.229 Sum_probs=32.8
Q ss_pred ecCCCchHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEE
Q 002515 22 MKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVG 75 (913)
Q Consensus 22 m~TGEGKTLva~lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLsv~ 75 (913)
=.+|+|||.++...+...+-.|+.|.+|....+ -.+..+.+......+|+.+.
T Consensus 7 G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~-~~~~~~~l~~~~~~~~~~~~ 59 (173)
T cd03115 7 GLQGVGKTTTAAKLALYLKKKGKKVLLVAADTY-RPAAIEQLRVLGEQVGVPVF 59 (173)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCC-ChHHHHHHHHhcccCCeEEE
Confidence 468999998766665545566888888875443 22233445544555565543
No 178
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=84.27 E-value=0.72 Score=51.70 Aligned_cols=34 Identities=35% Similarity=0.450 Sum_probs=24.0
Q ss_pred hhhHHHHhhccchhhhhccCCCCceEEEeecchhhhhc
Q 002515 103 GFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLID 140 (913)
Q Consensus 103 ~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiD 140 (913)
.|++|++.... ....+.+ +|.++|+||+|+|--|
T Consensus 111 ~fakl~~~~~~-~~~~~~~---~fKiiIlDEcdsmtsd 144 (346)
T KOG0989|consen 111 NFAKLTVLLKR-SDGYPCP---PFKIIILDECDSMTSD 144 (346)
T ss_pred CHHHHhhcccc-ccCCCCC---cceEEEEechhhhhHH
Confidence 47777766542 2334555 8999999999999644
No 179
>PRK04296 thymidine kinase; Provisional
Probab=84.06 E-value=1.1 Score=46.69 Aligned_cols=28 Identities=25% Similarity=0.146 Sum_probs=20.2
Q ss_pred CCCchHHHHHHHHHHHHHcCCcEEEEec
Q 002515 24 TGEGKTLVSTLAAYLNALTGEGVHVVTV 51 (913)
Q Consensus 24 TGEGKTLva~lpa~l~AL~G~~VhVvT~ 51 (913)
.|.|||..+.-.+.-.+-.|+.|.++.+
T Consensus 11 ~GsGKTT~~l~~~~~~~~~g~~v~i~k~ 38 (190)
T PRK04296 11 MNSGKSTELLQRAYNYEERGMKVLVFKP 38 (190)
T ss_pred CCCHHHHHHHHHHHHHHHcCCeEEEEec
Confidence 4779997666666544567889998854
No 180
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=83.57 E-value=3.5 Score=38.42 Aligned_cols=38 Identities=21% Similarity=0.160 Sum_probs=21.2
Q ss_pred eEEecCCCchHHHHHHHHHHHHHcCCcEEEEecCHHHH
Q 002515 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLA 56 (913)
Q Consensus 19 IaEm~TGEGKTLva~lpa~l~AL~G~~VhVvT~NdyLA 56 (913)
+.-=.+|.|||..+-..+....-.+..|..+..+...+
T Consensus 23 ~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~ 60 (151)
T cd00009 23 LLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLE 60 (151)
T ss_pred EEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhh
Confidence 55558999999654444432222245566665555443
No 181
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=83.29 E-value=2.7 Score=45.58 Aligned_cols=117 Identities=18% Similarity=0.081 Sum_probs=71.4
Q ss_pred hHHHHHHHHhcCC-eEEecCCCchHHHHHHHHHHHHHcC----CcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCC
Q 002515 6 VQIIGGAVLHDGS-IAEMKTGEGKTLVSTLAAYLNALTG----EGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRG 80 (913)
Q Consensus 6 vQl~g~l~L~~G~-IaEm~TGEGKTLva~lpa~l~AL~G----~~VhVvT~NdyLA~RDae~~~~~y~~LGLsv~~i~~~ 80 (913)
-|.-.+-. .+|. ++...-|+|||.|.+--+.-....+ ..+.++|.|...|..-.+.+.......+....
T Consensus 4 eQ~~~i~~-~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~aa~e~~~ri~~~l~~~~~~~~----- 77 (315)
T PF00580_consen 4 EQRRIIRS-TEGPLLVNAGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNAAAQEMRERIRELLEEEQQESS----- 77 (315)
T ss_dssp HHHHHHHS--SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHHHHHHCCHCCT-----
T ss_pred HHHHHHhC-CCCCEEEEeCCCCCchHHHHHHHHHhhccccCChHHheecccCHHHHHHHHHHHHHhcCccccccc-----
Confidence 34444444 4555 8899999999998776654222333 47899999999888777777775543321100
Q ss_pred CC-HHHHHhccCCCeEEECCCcchhhHHHHhhccchhhhhccCCCCceEEEeecchh
Q 002515 81 MI-PEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDS 136 (913)
Q Consensus 81 ~~-~~~r~~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs 136 (913)
.+ .-.........+..+|...|....|+.+..... - ..++-|+|+.+.
T Consensus 78 ~~~~~~~~~~~~~~~~i~T~hsf~~~ll~~~~~~~~-----~---~~~~~i~~~~~~ 126 (315)
T PF00580_consen 78 DNERLRRQLSNIDRIYISTFHSFCYRLLREYGYEIG-----I---DPNFEILDEEEQ 126 (315)
T ss_dssp T-HHHHHHHHHCTTSEEEEHHHHHHHHHHHHHGGTT-----S---HTTTEEECHHHH
T ss_pred ccccccccccccchheeehhhhhhhhhhhhhhhhhh-----c---cccceeecchhc
Confidence 00 001112234568889999998888877654321 1 446778888874
No 182
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=83.15 E-value=4 Score=46.14 Aligned_cols=52 Identities=21% Similarity=0.148 Sum_probs=33.2
Q ss_pred cCCCchHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEE
Q 002515 23 KTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVG 75 (913)
Q Consensus 23 ~TGEGKTLva~lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLsv~ 75 (913)
.+|+|||.++.-.|...+..|+.|.+++..-|=+ ...+++.......|+.+.
T Consensus 122 pnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~-~a~eql~~~a~~~~i~~~ 173 (318)
T PRK10416 122 VNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRA-AAIEQLQVWGERVGVPVI 173 (318)
T ss_pred CCCCcHHHHHHHHHHHHHhcCCeEEEEecCccch-hhHHHHHHHHHHcCceEE
Confidence 7999999776666555678899999998754311 122344444455565543
No 183
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=82.81 E-value=3.5 Score=49.91 Aligned_cols=39 Identities=18% Similarity=0.052 Sum_probs=32.1
Q ss_pred eEEecCCCchHHHHHHHHHHHHHcCCcEEEEecCHHHHH
Q 002515 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQ 57 (913)
Q Consensus 19 IaEm~TGEGKTLva~lpa~l~AL~G~~VhVvT~NdyLA~ 57 (913)
+.+=.-|.|||-|.+..+...-..|++|.|+.|+..=-.
T Consensus 205 ~I~GPPGTGKT~TlvEiI~qlvk~~k~VLVcaPSn~AVd 243 (649)
T KOG1803|consen 205 IIHGPPGTGKTRTLVEIISQLVKQKKRVLVCAPSNVAVD 243 (649)
T ss_pred EeeCCCCCCceeeHHHHHHHHHHcCCeEEEEcCchHHHH
Confidence 677789999999988888766678999999999875433
No 184
>PRK10867 signal recognition particle protein; Provisional
Probab=82.45 E-value=9.7 Score=45.01 Aligned_cols=83 Identities=18% Similarity=0.164 Sum_probs=51.2
Q ss_pred EecCCCchHHHHHHHHHHHHHc-CCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHH-HH------hccCC
Q 002515 21 EMKTGEGKTLVSTLAAYLNALT-GEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEE-RR------SNYRC 92 (913)
Q Consensus 21 Em~TGEGKTLva~lpa~l~AL~-G~~VhVvT~NdyLA~RDae~~~~~y~~LGLsv~~i~~~~~~~~-r~------~aY~~ 92 (913)
-=.+|+|||.+++-.|+..+.. |+.|.+|+.-.|=+. ..+++..+.+..|+.+-......+|.+ .+ ..-.+
T Consensus 106 vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~a-a~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~~~a~~~~~ 184 (433)
T PRK10867 106 VGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPA-AIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAALEEAKENGY 184 (433)
T ss_pred ECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchH-HHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHHHHHhcCC
Confidence 3479999998666555445666 999999998766432 235566667788888765433333321 11 11235
Q ss_pred C-eEEECCCcchh
Q 002515 93 D-ITYTNNSELGF 104 (913)
Q Consensus 93 D-I~YgT~~e~~f 104 (913)
| |++=|++++..
T Consensus 185 DvVIIDTaGrl~~ 197 (433)
T PRK10867 185 DVVIVDTAGRLHI 197 (433)
T ss_pred CEEEEeCCCCccc
Confidence 5 66678887654
No 185
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=82.03 E-value=4 Score=47.24 Aligned_cols=62 Identities=24% Similarity=0.308 Sum_probs=43.0
Q ss_pred cCC--eEEecCCCchHHHHHHHHHHHHHc-C-CcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEc
Q 002515 16 DGS--IAEMKTGEGKTLVSTLAAYLNALT-G-EGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQ 78 (913)
Q Consensus 16 ~G~--IaEm~TGEGKTLva~lpa~l~AL~-G-~~VhVvT~NdyLA~RDae~~~~~y~~LGLsv~~i~ 78 (913)
+|. +.-=.||.|||.++...+....+. | +.|.+||...|-. -..+.+.-+.+.+|+.+..+.
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~-ga~EqL~~~a~~~gv~~~~~~ 201 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRI-GGHEQLRIFGKILGVPVHAVK 201 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccc-cHHHHHHHHHHHcCCceEecC
Confidence 454 334479999998766666544443 6 5899999877732 356778878888998876543
No 186
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=81.22 E-value=3.9 Score=41.22 Aligned_cols=34 Identities=26% Similarity=0.245 Sum_probs=26.2
Q ss_pred EEecCCCchHHHHHHHHHHHHHcCCcEEEEecCH
Q 002515 20 AEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVND 53 (913)
Q Consensus 20 aEm~TGEGKTLva~lpa~l~AL~G~~VhVvT~Nd 53 (913)
+.=.+|.|||..+.--++-.+..|.+|..+|..+
T Consensus 4 i~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~ 37 (187)
T cd01124 4 LSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEE 37 (187)
T ss_pred EEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCC
Confidence 3446899999877766665678899999998753
No 187
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=81.15 E-value=4.3 Score=42.76 Aligned_cols=32 Identities=38% Similarity=0.399 Sum_probs=22.9
Q ss_pred eEEecCCCchHH-HHHHHHHHHHHc-CCcEEEEe
Q 002515 19 IAEMKTGEGKTL-VSTLAAYLNALT-GEGVHVVT 50 (913)
Q Consensus 19 IaEm~TGEGKTL-va~lpa~l~AL~-G~~VhVvT 50 (913)
+..+-||.||-- ||+|-.++.|+. |.+|.||-
T Consensus 30 li~V~TG~GKGKTTAAlG~alRa~GhG~rv~vvQ 63 (198)
T COG2109 30 LIIVFTGNGKGKTTAALGLALRALGHGLRVGVVQ 63 (198)
T ss_pred eEEEEecCCCChhHHHHHHHHHHhcCCCEEEEEE
Confidence 778889988853 566666667764 77888773
No 188
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=81.07 E-value=4 Score=50.20 Aligned_cols=68 Identities=26% Similarity=0.230 Sum_probs=50.5
Q ss_pred hhHHHHHHHHhcCC--eEEecCCCchHHH-HHHHHHHHHHcC---CcEEEEecCHHHHHHHHHHHHHHhhhcCC
Q 002515 5 DVQIIGGAVLHDGS--IAEMKTGEGKTLV-STLAAYLNALTG---EGVHVVTVNDYLAQRDAEWMERVHRFLGL 72 (913)
Q Consensus 5 dvQl~g~l~L~~G~--IaEm~TGEGKTLv-a~lpa~l~AL~G---~~VhVvT~NdyLA~RDae~~~~~y~~LGL 72 (913)
|-|-.++...+.++ |+.=..|.|||-+ ..+.+.+..+.+ ..|.+++|+--=|+|=.+.++....-+++
T Consensus 155 d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~ 228 (615)
T PRK10875 155 DWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGKALRQLPL 228 (615)
T ss_pred HHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhhcccc
Confidence 67988888777765 7777899999954 444444455542 46889999999999999988776655554
No 189
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=80.70 E-value=2.6 Score=54.35 Aligned_cols=117 Identities=23% Similarity=0.276 Sum_probs=73.0
Q ss_pred eEEecCCCchHHH-HHHHHHHHHHc--------CCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHH--
Q 002515 19 IAEMKTGEGKTLV-STLAAYLNALT--------GEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERR-- 87 (913)
Q Consensus 19 IaEm~TGEGKTLv-a~lpa~l~AL~--------G~~VhVvT~NdyLA~RDae~~~~~y~~LGLsv~~i~~~~~~~~r~-- 87 (913)
|..=.-|=||||- ....|.=++.. -.++.|||| ..|+-.=..++..|+-| |+|...++ +|.+|+
T Consensus 998 ILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCP-sTLtGHW~~E~~kf~pf--L~v~~yvg--~p~~r~~l 1072 (1549)
T KOG0392|consen 998 ILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCP-STLTGHWKSEVKKFFPF--LKVLQYVG--PPAERREL 1072 (1549)
T ss_pred eeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECC-chhhhHHHHHHHHhcch--hhhhhhcC--ChHHHHHH
Confidence 5555779999994 33333223333 135899999 56888777888888888 44444433 344443
Q ss_pred -hcc-CCCeEEECCCcchhhHHHHhhccchhhhhccCCCCceEEEeecchhhhhc-----------cCCCceeccCCC
Q 002515 88 -SNY-RCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLID-----------EGRNPLLISGEA 152 (913)
Q Consensus 88 -~aY-~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiD-----------ea~tPLiiSg~~ 152 (913)
..| ++||+++.= |-+|.-.. ..+.+ ..+|||+||-|.|=-- .|.+.||+||.+
T Consensus 1073 R~q~~~~~iiVtSY-----Dv~RnD~d----~l~~~---~wNYcVLDEGHVikN~ktkl~kavkqL~a~hRLILSGTP 1138 (1549)
T KOG0392|consen 1073 RDQYKNANIIVTSY-----DVVRNDVD----YLIKI---DWNYCVLDEGHVIKNSKTKLTKAVKQLRANHRLILSGTP 1138 (1549)
T ss_pred HhhccccceEEeeH-----HHHHHHHH----HHHhc---ccceEEecCcceecchHHHHHHHHHHHhhcceEEeeCCC
Confidence 344 578886653 44443221 23445 8999999999975311 135669999964
No 190
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=80.54 E-value=9.9 Score=46.68 Aligned_cols=69 Identities=22% Similarity=0.134 Sum_probs=47.3
Q ss_pred hHHHHHHHHhcCC--eEEecCCCchHHHHHHHHHHHHH-cCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEc
Q 002515 6 VQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNAL-TGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQ 78 (913)
Q Consensus 6 vQl~g~l~L~~G~--IaEm~TGEGKTLva~lpa~l~AL-~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLsv~~i~ 78 (913)
.|.-+.-..++.- |+|=.-|.|||.|.+-.+|-.+= .+..|.|+.|+..---+-+|.+. -.||+|.-+.
T Consensus 414 SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~IVyhl~~~~~~~VLvcApSNiAVDqLaeKIh----~tgLKVvRl~ 485 (935)
T KOG1802|consen 414 SQSNAVKHVLQRPLSLIQGPPGTGKTVTSATIVYHLARQHAGPVLVCAPSNIAVDQLAEKIH----KTGLKVVRLC 485 (935)
T ss_pred HHHHHHHHHHcCCceeeecCCCCCceehhHHHHHHHHHhcCCceEEEcccchhHHHHHHHHH----hcCceEeeee
Confidence 3566666555554 78889999999998877775554 34579999998765555555443 3567776553
No 191
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=80.53 E-value=8.2 Score=47.29 Aligned_cols=67 Identities=19% Similarity=0.144 Sum_probs=46.4
Q ss_pred hhHHHHHHHHhcCC--eEEecCCCchHHH-HHHHHHHHHHcC----CcEEEEecCHHHHHHHHHHHHHHhhhcC
Q 002515 5 DVQIIGGAVLHDGS--IAEMKTGEGKTLV-STLAAYLNALTG----EGVHVVTVNDYLAQRDAEWMERVHRFLG 71 (913)
Q Consensus 5 dvQl~g~l~L~~G~--IaEm~TGEGKTLv-a~lpa~l~AL~G----~~VhVvT~NdyLA~RDae~~~~~y~~LG 71 (913)
+-|-.++...+.++ ++.=.-|+|||-+ ..+..++..... ..|.+++|+--=|.|=.+..+.-...|+
T Consensus 148 ~~Qk~A~~~al~~~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~~~~~l~ 221 (586)
T TIGR01447 148 NWQKVAVALALKSNFSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRKAVKNLA 221 (586)
T ss_pred HHHHHHHHHHhhCCeEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHhhhcccc
Confidence 46776666555555 6777899999964 445555554432 4699999999999998887766554444
No 192
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=80.31 E-value=7.6 Score=37.40 Aligned_cols=36 Identities=28% Similarity=0.277 Sum_probs=25.3
Q ss_pred ecCCCchHHHHHHHHHHHHHcCCcEEEEecCHHHHH
Q 002515 22 MKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQ 57 (913)
Q Consensus 22 m~TGEGKTLva~lpa~l~AL~G~~VhVvT~NdyLA~ 57 (913)
=.+|.|||..+...+...+-.|..|.++..-..+..
T Consensus 6 G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~ 41 (165)
T cd01120 6 GPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEE 41 (165)
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHH
Confidence 368999998766666555667888888777555443
No 193
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=80.18 E-value=1.5 Score=40.21 Aligned_cols=35 Identities=29% Similarity=0.270 Sum_probs=22.0
Q ss_pred EEecCCCchHHHHHHHHHHHHHcCC--cEEEEecCHHHH
Q 002515 20 AEMKTGEGKTLVSTLAAYLNALTGE--GVHVVTVNDYLA 56 (913)
Q Consensus 20 aEm~TGEGKTLva~lpa~l~AL~G~--~VhVvT~NdyLA 56 (913)
.-=.+|.|||.++...+. .+... +|..++.+....
T Consensus 7 l~G~~G~GKTtl~~~l~~--~~~~~~~~~~~~~~~~~~~ 43 (148)
T smart00382 7 IVGPPGSGKTTLARALAR--ELGPPGGGVIYIDGEDILE 43 (148)
T ss_pred EECCCCCcHHHHHHHHHh--ccCCCCCCEEEECCEEccc
Confidence 344699999987766554 23333 577777665443
No 194
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=79.65 E-value=7 Score=49.70 Aligned_cols=50 Identities=16% Similarity=0.022 Sum_probs=34.5
Q ss_pred hhHHHHHHHHhc---CCeEEecCCCchHHHHHHHHHHHHHcCCcEEEEecCHH
Q 002515 5 DVQIIGGAVLHD---GSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDY 54 (913)
Q Consensus 5 dvQl~g~l~L~~---G~IaEm~TGEGKTLva~lpa~l~AL~G~~VhVvT~Ndy 54 (913)
..|--|+.-.+. =.++.=.-|.|||-+....+=+....|+.|.+.+.+-.
T Consensus 672 ~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~LIkiL~~~gkkVLLtsyThs 724 (1100)
T KOG1805|consen 672 NDQRQALLKALAAEDYALILGMPGTGKTTTISLLIKILVALGKKVLLTSYTHS 724 (1100)
T ss_pred HHHHHHHHHHHhccchheeecCCCCCchhhHHHHHHHHHHcCCeEEEEehhhH
Confidence 356666663332 22666668999998766666667788999998887654
No 195
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=79.31 E-value=3.2 Score=42.51 Aligned_cols=34 Identities=26% Similarity=0.199 Sum_probs=22.6
Q ss_pred eEEecC--CCchHHHHHHHHHHHHHcCCcEEE---EecC
Q 002515 19 IAEMKT--GEGKTLVSTLAAYLNALTGEGVHV---VTVN 52 (913)
Q Consensus 19 IaEm~T--GEGKTLva~lpa~l~AL~G~~VhV---vT~N 52 (913)
++++-| |-|||-+|.--++-.|-.|.+|.+ +...
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~ 42 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGG 42 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCC
Confidence 344544 556777666666656778999998 6554
No 196
>PRK08727 hypothetical protein; Validated
Probab=78.31 E-value=7.2 Score=41.82 Aligned_cols=32 Identities=22% Similarity=0.230 Sum_probs=19.3
Q ss_pred eEEecCCCchHH-HHHHHHHHHHHcCCcEEEEec
Q 002515 19 IAEMKTGEGKTL-VSTLAAYLNALTGEGVHVVTV 51 (913)
Q Consensus 19 IaEm~TGEGKTL-va~lpa~l~AL~G~~VhVvT~ 51 (913)
+.-=.||.|||- +.++... ..-.|..|..++.
T Consensus 45 ~l~G~~G~GKThL~~a~~~~-~~~~~~~~~y~~~ 77 (233)
T PRK08727 45 YLSGPAGTGKTHLALALCAA-AEQAGRSSAYLPL 77 (233)
T ss_pred EEECCCCCCHHHHHHHHHHH-HHHcCCcEEEEeH
Confidence 556679999994 4443333 2234666666664
No 197
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=77.75 E-value=34 Score=41.53 Aligned_cols=122 Identities=20% Similarity=0.208 Sum_probs=61.0
Q ss_pred CCcccHHHHHHHHhCCC-e--EEe---CCCCCcccccCCCeEEeChhHHHHHHH---HHHHHHHhcCCcEEEEecchhhH
Q 002515 296 GTAKTEEKEFLKMFQMP-V--IEV---PTNLPNIRVDLPIQSFATARGKWEYAR---QEVESMFRLGRPVLVGSTSVENS 366 (913)
Q Consensus 296 GTa~te~~Ef~~iY~l~-v--v~I---Pt~~p~~R~d~~d~v~~t~~~k~~aii---~ei~~~~~~grPVLI~t~Si~~S 366 (913)
.|.++-.+--.+++|+. + +.+ ||-..-.-...|...-.++.+|-..|+ .-..++...|-..+-||.+-.-+
T Consensus 459 ~~~K~~~~~~~~~~~~~E~~Li~~DGSPs~~K~~V~WNP~~~P~~~~~~~~~i~E~s~~~~~~i~~~~R~IAFC~~R~~C 538 (1034)
T KOG4150|consen 459 TPYKDRTRLRSELANLSELELVTIDGSPSSEKLFVLWNPSAPPTSKSEKSSKVVEVSHLFAEMVQHGLRCIAFCPSRKLC 538 (1034)
T ss_pred CCcCCHHHHHHHhcCCcceEEEEecCCCCccceEEEeCCCCCCcchhhhhhHHHHHHHHHHHHHHcCCcEEEeccHHHHH
Confidence 44444333344566664 2 222 332222222333333334444444443 33456678899999999999999
Q ss_pred HHHHHH----HHHCCCCeEE---eccCCcchhhHHHHHH---hcCCCccEEEEcCCCCCCcce
Q 002515 367 EYLSDL----LKQQGIPHNV---LNARPKYAAREAETVA---QAGRKYAITISTNMAGRGTDI 419 (913)
Q Consensus 367 E~ls~~----L~~~gi~~~v---LnA~~k~~~~Ea~Iia---~AG~~G~VTIATnmAGRGTDI 419 (913)
|.+-.. |.+-| ||-| ..-+..+.+....-|. --|.--.| ||||-.--|+||
T Consensus 539 EL~~~~~R~I~~ET~-~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~gi-IaTNALELGIDI 599 (1034)
T KOG4150|consen 539 ELVLCLTREILAETA-PHLVEAITSYRGGYIAEDRRKIESDLFGGKLCGI-IATNALELGIDI 599 (1034)
T ss_pred HHHHHHHHHHHHHhh-HHHHHHHHhhcCccchhhHHHHHHHhhCCeeeEE-Eecchhhhcccc
Confidence 876443 32222 1211 0000012222222222 23544444 899999999888
No 198
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=77.62 E-value=16 Score=43.16 Aligned_cols=85 Identities=24% Similarity=0.283 Sum_probs=50.5
Q ss_pred EEecCCCchHHHHHHHH-HHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHH-----HHh--ccC
Q 002515 20 AEMKTGEGKTLVSTLAA-YLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEE-----RRS--NYR 91 (913)
Q Consensus 20 aEm~TGEGKTLva~lpa-~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLsv~~i~~~~~~~~-----r~~--aY~ 91 (913)
.-=.+|+|||.+++-.| ++..-.|+.|.+|+...|=+. -.+++.......|+.+-......+|.+ .+. .-.
T Consensus 104 ~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~-a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~~~~~~~ 182 (428)
T TIGR00959 104 MVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPA-AIEQLKVLGQQVGVPVFALGKGQSPVEIARRALEYAKENG 182 (428)
T ss_pred EECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchH-HHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHhcC
Confidence 34468999998655555 433357999999988765332 234455556678887665443334421 111 123
Q ss_pred CC-eEEECCCcchhh
Q 002515 92 CD-ITYTNNSELGFD 105 (913)
Q Consensus 92 ~D-I~YgT~~e~~fD 105 (913)
+| |++=|++....|
T Consensus 183 ~DvVIIDTaGr~~~d 197 (428)
T TIGR00959 183 FDVVIVDTAGRLQID 197 (428)
T ss_pred CCEEEEeCCCccccC
Confidence 46 677788876543
No 199
>COG4889 Predicted helicase [General function prediction only]
Probab=77.34 E-value=11 Score=47.48 Aligned_cols=75 Identities=19% Similarity=0.193 Sum_probs=50.0
Q ss_pred CCchhHHHHHHHH----h-cCCeEEecCCCchHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEE
Q 002515 2 RHFDVQIIGGAVL----H-DGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGL 76 (913)
Q Consensus 2 rp~dvQl~g~l~L----~-~G~IaEm~TGEGKTLva~lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLsv~~ 76 (913)
|||-.|.+-+..= + .|++ -|.-|.|||.+++=.+ .||....+..+.|+=.|-.|-..+... =.-|.++...
T Consensus 163 R~hQq~Aid~a~~~F~~n~RGkL-IMAcGTGKTfTsLkis--Eala~~~iL~LvPSIsLLsQTlrew~~-~~~l~~~a~a 238 (1518)
T COG4889 163 RPHQQTAIDAAKEGFSDNDRGKL-IMACGTGKTFTSLKIS--EALAAARILFLVPSISLLSQTLREWTA-QKELDFRASA 238 (1518)
T ss_pred ChhHHHHHHHHHhhcccccCCcE-EEecCCCccchHHHHH--HHHhhhheEeecchHHHHHHHHHHHhh-ccCccceeEE
Confidence 5565555544432 2 4665 4899999999876554 567778999999998887776554432 2456666666
Q ss_pred EcCC
Q 002515 77 IQRG 80 (913)
Q Consensus 77 i~~~ 80 (913)
++++
T Consensus 239 VcSD 242 (1518)
T COG4889 239 VCSD 242 (1518)
T ss_pred EecC
Confidence 7664
No 200
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=77.31 E-value=4.3 Score=46.71 Aligned_cols=104 Identities=13% Similarity=0.141 Sum_probs=63.3
Q ss_pred eEEecCCCchHHHHHHHHHHHHHcC-CcEEEEec---CHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHHhccCCCe
Q 002515 19 IAEMKTGEGKTLVSTLAAYLNALTG-EGVHVVTV---NDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNYRCDI 94 (913)
Q Consensus 19 IaEm~TGEGKTLva~lpa~l~AL~G-~~VhVvT~---NdyLA~RDae~~~~~y~~LGLsv~~i~~~~~~~~r~~aY~~DI 94 (913)
++.=..|+|||-++++-+++.++.. .+.++++. ...|..=-..++......+|+.........+. .|
T Consensus 5 i~~GgrgSGKS~~~~~~~~~~~~~~~~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~~~~~~~~~~~~---------~i 75 (396)
T TIGR01547 5 IAKGGRRSGKTFAIALKLVEKLAINKKQQNILAARKVQNSIRDSVFKDIENLLSIEGINYEFKKSKSSM---------EI 75 (396)
T ss_pred EEeCCCCcccHHHHHHHHHHHHHhcCCCcEEEEEehhhhHHHHHHHHHHHHHHHHcCChhheeecCCcc---------EE
Confidence 5666789999998888887777774 45554433 23366666677888888889875443322211 26
Q ss_pred EEE-CCCcchhhHHHHhhccchhhhhccCCCCceEEEeecchhh
Q 002515 95 TYT-NNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV 137 (913)
Q Consensus 95 ~Yg-T~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsi 137 (913)
++. |.+.+-|--++|+. +. .+....++++.+||++-+
T Consensus 76 ~~~~~g~~i~f~g~~d~~----~~--ik~~~~~~~~~idEa~~~ 113 (396)
T TIGR01547 76 KILNTGKKFIFKGLNDKP----NK--LKSGAGIAIIWFEEASQL 113 (396)
T ss_pred EecCCCeEEEeecccCCh----hH--hhCcceeeeehhhhhhhc
Confidence 663 45665554443222 11 121225789999998865
No 201
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=77.13 E-value=8.2 Score=45.41 Aligned_cols=53 Identities=26% Similarity=0.344 Sum_probs=35.1
Q ss_pred cCCCchHHHHHHHHHHHH-H-cCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEE
Q 002515 23 KTGEGKTLVSTLAAYLNA-L-TGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGL 76 (913)
Q Consensus 23 ~TGEGKTLva~lpa~l~A-L-~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLsv~~ 76 (913)
.||.|||.+++-.|+..+ + .|+.|.+||...|=+.- .+.+....+.+|+.+..
T Consensus 229 ptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a-~eqL~~~a~~~~vp~~~ 283 (424)
T PRK05703 229 PTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGA-VEQLKTYAKIMGIPVEV 283 (424)
T ss_pred CCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHH-HHHHHHHHHHhCCceEc
Confidence 499999976555444344 4 46899999998763221 24555566778877653
No 202
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=76.84 E-value=16 Score=46.44 Aligned_cols=74 Identities=12% Similarity=0.099 Sum_probs=48.6
Q ss_pred HHhccCC-CeEEECCCcchhhHHHHhhccchhhhhccCCCCceEEEeecchhhh------------hccCCCceecc--C
Q 002515 86 RRSNYRC-DITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL------------IDEGRNPLLIS--G 150 (913)
Q Consensus 86 r~~aY~~-DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiL------------iDea~tPLiiS--g 150 (913)
|...|.. .|+.+|+.=+.-|.|...+-- . .+.-+||||||++. -..+..|+|.+ .
T Consensus 1 R~~ly~~ggi~~~T~rIl~~DlL~~ri~~-------~---~itgiiv~~Ahr~~~~~~eaFI~rlyr~~n~~gfIkafSd 70 (814)
T TIGR00596 1 REKVYLEGGIFSITSRILVVDLLTGIIPP-------E---LITGILVLRADRIIESSQEAFILRLYRQKNKTGFIKAFSD 70 (814)
T ss_pred ChhHhhcCCEEEEechhhHhHHhcCCCCH-------H---HccEEEEeecccccccccHHHHHHHHHHhCCCcceEEecC
Confidence 3466765 899999999988888665532 2 67789999999873 23456777754 3
Q ss_pred CCCCCccchHHHHHHHHHh
Q 002515 151 EASKDVARYPVAAKVAELL 169 (913)
Q Consensus 151 ~~~~~~~~y~~~~~~v~~l 169 (913)
.+..-..-|..+.++.+.|
T Consensus 71 sP~~~~~g~~~l~~vmk~L 89 (814)
T TIGR00596 71 NPEAFTMGFSPLETKMRNL 89 (814)
T ss_pred CCcccccchHHHHHHHHHh
Confidence 3333223345566666665
No 203
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=76.31 E-value=6.2 Score=46.00 Aligned_cols=57 Identities=21% Similarity=0.271 Sum_probs=41.8
Q ss_pred cCCCchHHHHHHHHHHHH-HcC-CcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCC
Q 002515 23 KTGEGKTLVSTLAAYLNA-LTG-EGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRG 80 (913)
Q Consensus 23 ~TGEGKTLva~lpa~l~A-L~G-~~VhVvT~NdyLA~RDae~~~~~y~~LGLsv~~i~~~ 80 (913)
.||-|||.|.+=.|+..+ +.| ++|-+||.--|= -=-.|++.-..+.||+.+.++.+.
T Consensus 211 PTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYR-IGA~EQLk~Ya~im~vp~~vv~~~ 269 (407)
T COG1419 211 PTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYR-IGAVEQLKTYADIMGVPLEVVYSP 269 (407)
T ss_pred CCCCcHHHHHHHHHHHHHhhccCcceEEEEeccch-hhHHHHHHHHHHHhCCceEEecCH
Confidence 699999987555554455 444 489999997762 223577888889999999988753
No 204
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=75.92 E-value=5.2 Score=41.55 Aligned_cols=31 Identities=32% Similarity=0.293 Sum_probs=19.6
Q ss_pred eEEecCC--CchHHHHHHHHHHHHHcCCcEEEE
Q 002515 19 IAEMKTG--EGKTLVSTLAAYLNALTGEGVHVV 49 (913)
Q Consensus 19 IaEm~TG--EGKTLva~lpa~l~AL~G~~VhVv 49 (913)
+.++-|| -|||-++.--++-.+-.|.+|.|+
T Consensus 7 li~v~~g~GkGKtt~a~g~a~ra~~~g~~v~iv 39 (173)
T TIGR00708 7 IIIVHTGNGKGKTTAAFGMALRALGHGKKVGVI 39 (173)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHHCCCeEEEE
Confidence 4455555 556765555555456778899776
No 205
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=75.69 E-value=19 Score=38.85 Aligned_cols=115 Identities=19% Similarity=0.210 Sum_probs=56.8
Q ss_pred hcCC--eEEecCCCchHHHHHHHHHHHHHc-CCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEc--CCCCHHHHHh-
Q 002515 15 HDGS--IAEMKTGEGKTLVSTLAAYLNALT-GEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQ--RGMIPEERRS- 88 (913)
Q Consensus 15 ~~G~--IaEm~TGEGKTLva~lpa~l~AL~-G~~VhVvT~NdyLA~RDae~~~~~y~~LGLsv~~i~--~~~~~~~r~~- 88 (913)
..|. +.--.||.|||..+.--++-.|.. |..|..++.-. -..+-...+... ..|+.+.... ...+.++-..
T Consensus 28 ~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E~-~~~~~~~r~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 104 (271)
T cd01122 28 RKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEE-PVVRTARRLLGQ--YAGKRLHLPDTVFIYTLEEFDAA 104 (271)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEccc-CHHHHHHHHHHH--HhCCCcccCCccccccHHHHHHH
Confidence 4565 556679999997655545444566 88888887632 122222222222 2244332211 1122222211
Q ss_pred --ccC-CC--eEEECCCcchhhHHHHhhccchhhhhccCCCCceEEEeecchhhh
Q 002515 89 --NYR-CD--ITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (913)
Q Consensus 89 --aY~-~D--I~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiL 138 (913)
.+. .+ ++|-+.+.+..+.+.+.+..- .... +.+++|||-+..+.
T Consensus 105 ~~~~~~~~~l~i~d~~~~~~~~~i~~~i~~~---~~~~---~~~~vvID~l~~l~ 153 (271)
T cd01122 105 FDEFEGTGRLFMYDSFGEYSMDSVLEKVRYM---AVSH---GIQHIIIDNLSIMV 153 (271)
T ss_pred HHHhcCCCcEEEEcCCCccCHHHHHHHHHHH---HhcC---CceEEEECCHHHHh
Confidence 111 11 333334444445555444311 1123 68899999988875
No 206
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=75.06 E-value=4.5 Score=46.68 Aligned_cols=91 Identities=23% Similarity=0.196 Sum_probs=48.7
Q ss_pred eEEecCCCchHHHHHHHH--HHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHHhccCCCeEE
Q 002515 19 IAEMKTGEGKTLVSTLAA--YLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNYRCDITY 96 (913)
Q Consensus 19 IaEm~TGEGKTLva~lpa--~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLsv~~i~~~~~~~~r~~aY~~DI~Y 96 (913)
++-=+||.|||.+.-..+ +-.+..+.. ++.+|-.--.--..-+..++..+| .....
T Consensus 46 ~iyG~~GTGKT~~~~~v~~~l~~~~~~~~--~~yINc~~~~t~~~i~~~i~~~~~---~~p~~----------------- 103 (366)
T COG1474 46 IIYGPTGTGKTATVKFVMEELEESSANVE--VVYINCLELRTPYQVLSKILNKLG---KVPLT----------------- 103 (366)
T ss_pred EEECCCCCCHhHHHHHHHHHHHhhhccCc--eEEEeeeeCCCHHHHHHHHHHHcC---CCCCC-----------------
Confidence 677899999998754433 333333332 344443222222244556666666 11111
Q ss_pred ECCCcchhhHHHHhhccchhhhhccCCCCceEEEeecchhhhhc
Q 002515 97 TNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLID 140 (913)
Q Consensus 97 gT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiD 140 (913)
|.++.=.+..|.+++.. .+ +.-++|+||+|.++-.
T Consensus 104 g~~~~~~~~~l~~~~~~------~~---~~~IvvLDEid~L~~~ 138 (366)
T COG1474 104 GDSSLEILKRLYDNLSK------KG---KTVIVILDEVDALVDK 138 (366)
T ss_pred CCchHHHHHHHHHHHHh------cC---CeEEEEEcchhhhccc
Confidence 22222224455555532 23 7789999999998743
No 207
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=74.90 E-value=6.3 Score=41.16 Aligned_cols=31 Identities=23% Similarity=0.328 Sum_probs=21.0
Q ss_pred eEEecCCCchH-HHHHHHHHHHHH-cCCcEEEE
Q 002515 19 IAEMKTGEGKT-LVSTLAAYLNAL-TGEGVHVV 49 (913)
Q Consensus 19 IaEm~TGEGKT-Lva~lpa~l~AL-~G~~VhVv 49 (913)
++++-||.||- -+|+|-.++.|+ .|.+|.|+
T Consensus 23 li~VYtGdGKGKTTAAlGlalRAaG~G~rV~ii 55 (178)
T PRK07414 23 LVQVFTSSQRNFFTSVMAQALRIAGQGTPVLIV 55 (178)
T ss_pred EEEEEeCCCCCchHHHHHHHHHHhcCCCEEEEE
Confidence 67888888873 245555555665 58889876
No 208
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=74.75 E-value=4.4 Score=50.24 Aligned_cols=47 Identities=21% Similarity=0.088 Sum_probs=37.7
Q ss_pred eEEecCCCchHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhh
Q 002515 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHR 68 (913)
Q Consensus 19 IaEm~TGEGKTLva~lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~ 68 (913)
+..--||+|||++.+- . .+-.++.+.|||+|..+|.+-+.++..||.
T Consensus 33 ~l~Gvtgs~kt~~~a~--~-~~~~~~p~Lvi~~n~~~A~ql~~el~~f~p 79 (655)
T TIGR00631 33 TLLGVTGSGKTFTMAN--V-IAQVNRPTLVIAHNKTLAAQLYNEFKEFFP 79 (655)
T ss_pred EEECCCCcHHHHHHHH--H-HHHhCCCEEEEECCHHHHHHHHHHHHHhCC
Confidence 6667799999987553 2 234578999999999999999999888763
No 209
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=74.61 E-value=3.6 Score=50.48 Aligned_cols=41 Identities=37% Similarity=0.380 Sum_probs=30.8
Q ss_pred CCchhHHHH--HH--HHhcCC--eEEecCCCchHHHHHHHHHHHHHcC
Q 002515 2 RHFDVQIIG--GA--VLHDGS--IAEMKTGEGKTLVSTLAAYLNALTG 43 (913)
Q Consensus 2 rp~dvQl~g--~l--~L~~G~--IaEm~TGEGKTLva~lpa~l~AL~G 43 (913)
.|||+|+-= .+ +|-+|+ |-|-.||.||||..+..+. -+|.-
T Consensus 15 ~PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLiCaal-tWL~~ 61 (821)
T KOG1133|consen 15 TPYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLICAAL-TWLRD 61 (821)
T ss_pred CchhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHHHHHH-HHHHH
Confidence 699998643 33 456899 7899999999998776664 56653
No 210
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=74.03 E-value=16 Score=43.90 Aligned_cols=81 Identities=19% Similarity=0.162 Sum_probs=48.7
Q ss_pred cCCCchHHHHHHHHHHHHH-cC-CcEEEEecCHH-HHHHHHHHHHHHhhhcCCeEEEEcCCCCHH-HHHhccCC-CeEEE
Q 002515 23 KTGEGKTLVSTLAAYLNAL-TG-EGVHVVTVNDY-LAQRDAEWMERVHRFLGLSVGLIQRGMIPE-ERRSNYRC-DITYT 97 (913)
Q Consensus 23 ~TGEGKTLva~lpa~l~AL-~G-~~VhVvT~Ndy-LA~RDae~~~~~y~~LGLsv~~i~~~~~~~-~r~~aY~~-DI~Yg 97 (913)
.||.|||.++...+....+ .| +.|.+|+...| ++. .+.+.-+.+.+|+.+..+....+.. .....-++ .|.+-
T Consensus 264 pnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA--~EQLr~~AeilGVpv~~~~~~~Dl~~aL~~L~d~d~VLID 341 (484)
T PRK06995 264 PTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGG--HEQLRIYGKILGVPVHAVKDAADLRLALSELRNKHIVLID 341 (484)
T ss_pred CCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhH--HHHHHHHHHHhCCCeeccCCchhHHHHHHhccCCCeEEeC
Confidence 6999999876666654444 45 48998887654 222 4556666788888876554433222 12222233 46667
Q ss_pred CCCcchhh
Q 002515 98 NNSELGFD 105 (913)
Q Consensus 98 T~~e~~fD 105 (913)
|.+....|
T Consensus 342 TaGr~~~d 349 (484)
T PRK06995 342 TIGMSQRD 349 (484)
T ss_pred CCCcChhh
Confidence 77765444
No 211
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=73.72 E-value=6.1 Score=49.57 Aligned_cols=34 Identities=26% Similarity=0.255 Sum_probs=23.6
Q ss_pred EEecCCCchHHHHHHHHH-HHHHcCC-cEEEEecCH
Q 002515 20 AEMKTGEGKTLVSTLAAY-LNALTGE-GVHVVTVND 53 (913)
Q Consensus 20 aEm~TGEGKTLva~lpa~-l~AL~G~-~VhVvT~Nd 53 (913)
++|.||.|||-+++=.+| ||--.|. +--||.|+.
T Consensus 79 I~METGTGKTy~YlrtmfeLhk~YG~~KFIivVPs~ 114 (985)
T COG3587 79 ILMETGTGKTYTYLRTMFELHKKYGLFKFIIVVPSL 114 (985)
T ss_pred EEEecCCCceeeHHHHHHHHHHHhCceeEEEEeccH
Confidence 799999999999887776 4555564 334555544
No 212
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=72.88 E-value=4.9 Score=40.56 Aligned_cols=34 Identities=26% Similarity=0.322 Sum_probs=26.1
Q ss_pred eEEecCCCchHHHHHHHHHHHHHcCCcEEEEecC
Q 002515 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVN 52 (913)
Q Consensus 19 IaEm~TGEGKTLva~lpa~l~AL~G~~VhVvT~N 52 (913)
|+-.+-|.|||.+++..|...|..|++|.++-..
T Consensus 3 v~~~kGG~GKTt~a~~la~~la~~g~~VlliD~D 36 (195)
T PF01656_consen 3 VTSGKGGVGKTTIAANLAQALARKGKKVLLIDLD 36 (195)
T ss_dssp EEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEES
T ss_pred EEcCCCCccHHHHHHHHHhccccccccccccccC
Confidence 4556789999987776666677799999998774
No 213
>PF04364 DNA_pol3_chi: DNA polymerase III chi subunit, HolC; InterPro: IPR007459 The DNA polymerase III holoenzyme (2.7.7.7 from EC) is the polymerase responsible for the replication of the Escherichia coli chromosome. The holoenzyme is composed of the DNA polymerase III core, the sliding clamp, and the DnaX clamp loading complex. The DnaX complex contains either the tau or gamma product of gene dnax, complexed to delta.delta and to chi psi. Chi forms a 1:1 heterodimer with psi. The chi psi complex functions by increasing the affinity of tau and gamma for delta.delta allowing a functional clamp-loading complex to form at physiological subunit concentrations. Psi is responsible for the interaction with DnaX (gamma/tau), but psi is insoluble unless it is in a complex with chi [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3SXU_A 1EM8_C.
Probab=72.83 E-value=10 Score=37.77 Aligned_cols=71 Identities=25% Similarity=0.381 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHC----CCCeEEeccCCcchhhHHHHHHhcCCCccEEEEcCCC-
Q 002515 339 WEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQ----GIPHNVLNARPKYAAREAETVAQAGRKYAITISTNMA- 413 (913)
Q Consensus 339 ~~aii~ei~~~~~~grPVLI~t~Si~~SE~ls~~L~~~----gi~~~vLnA~~k~~~~Ea~Iia~AG~~G~VTIATnmA- 413 (913)
...++..+.+..++|+.|+|.|.+.+.++.|.+.|-.. -|||...+..+ .. .-.|.|+++..
T Consensus 15 ~~~~c~L~~k~~~~g~rv~V~~~d~~~a~~lD~~LW~~~~~sFlPH~~~~~~~---~~----------~~PV~i~~~~~~ 81 (137)
T PF04364_consen 15 ERFACRLAEKAYRQGQRVLVLCPDEEQAEALDELLWTFSPDSFLPHGLAGEPP---AA----------RQPVLITWDQEA 81 (137)
T ss_dssp HHHHHHHHHHHHHTT--EEEE-SSHHHHHHHHHHTTTSSTT----EEETT-SS---TT------------SEEEE-TTS-
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHCCCCCCCCCCcccCCCC---CC----------CCeEEEecCccc
Confidence 47788888899999999999999999999999999664 48998855421 11 13799999883
Q ss_pred --CCCcceecC
Q 002515 414 --GRGTDIILG 422 (913)
Q Consensus 414 --GRGTDIkLg 422 (913)
.-+.|+.+.
T Consensus 82 ~~~~~~~vLin 92 (137)
T PF04364_consen 82 NPNNHADVLIN 92 (137)
T ss_dssp ---S--SEEEE
T ss_pred CCCCCCCEEEE
Confidence 334565543
No 214
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=71.85 E-value=7.2 Score=45.49 Aligned_cols=53 Identities=17% Similarity=0.167 Sum_probs=37.8
Q ss_pred cCCCchHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEE
Q 002515 23 KTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGL 76 (913)
Q Consensus 23 ~TGEGKTLva~lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLsv~~ 76 (913)
.||.|||.+++-.+....-.|+.|.+||.-.|=+. -.+++....+.+|+.+-.
T Consensus 214 ptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~g-AveQLk~yae~lgvpv~~ 266 (407)
T PRK12726 214 QTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSG-AVEQFQGYADKLDVELIV 266 (407)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCcc-HHHHHHHHhhcCCCCEEe
Confidence 48999997554444434567999999999877221 156788888888987654
No 215
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=71.47 E-value=4.9 Score=40.49 Aligned_cols=32 Identities=28% Similarity=0.228 Sum_probs=25.8
Q ss_pred EecCCCchHHHHHHHHHHHHHcCCcEEEEecC
Q 002515 21 EMKTGEGKTLVSTLAAYLNALTGEGVHVVTVN 52 (913)
Q Consensus 21 Em~TGEGKTLva~lpa~l~AL~G~~VhVvT~N 52 (913)
--+=|+|||.+++-.|+..|-.|++|++|=.+
T Consensus 6 s~kgG~GKTt~a~~LA~~la~~g~~vllvD~D 37 (169)
T cd02037 6 SGKGGVGKSTVAVNLALALAKLGYKVGLLDAD 37 (169)
T ss_pred cCCCcCChhHHHHHHHHHHHHcCCcEEEEeCC
Confidence 34669999998887777788899999998543
No 216
>PRK08084 DNA replication initiation factor; Provisional
Probab=69.57 E-value=15 Score=39.54 Aligned_cols=34 Identities=21% Similarity=0.321 Sum_probs=21.9
Q ss_pred eEEecCCCchHH-HHHHHHHHHHHcCCcEEEEecCH
Q 002515 19 IAEMKTGEGKTL-VSTLAAYLNALTGEGVHVVTVND 53 (913)
Q Consensus 19 IaEm~TGEGKTL-va~lpa~l~AL~G~~VhVvT~Nd 53 (913)
+.-=.+|.|||- +.++...+.. .|..|..++.++
T Consensus 49 ~l~Gp~G~GKThLl~a~~~~~~~-~~~~v~y~~~~~ 83 (235)
T PRK08084 49 YLWSREGAGRSHLLHAACAELSQ-RGRAVGYVPLDK 83 (235)
T ss_pred EEECCCCCCHHHHHHHHHHHHHh-CCCeEEEEEHHH
Confidence 555579999994 4444544332 477788777754
No 217
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=69.07 E-value=6.5 Score=50.30 Aligned_cols=113 Identities=25% Similarity=0.455 Sum_probs=79.4
Q ss_pred eEEecCCCchHHHHHHHHHHHHHc---CCcEEEEecCHHHHHHHH-HHHHHHhhhcCCeEEEEcCCCCHHHHHhccCCCe
Q 002515 19 IAEMKTGEGKTLVSTLAAYLNALT---GEGVHVVTVNDYLAQRDA-EWMERVHRFLGLSVGLIQRGMIPEERRSNYRCDI 94 (913)
Q Consensus 19 IaEm~TGEGKTLva~lpa~l~AL~---G~~VhVvT~NdyLA~RDa-e~~~~~y~~LGLsv~~i~~~~~~~~r~~aY~~DI 94 (913)
++-..||.|||++|-++.. .++. |.+|-+++|-..|-+--+ .|=..++.- |+++.-..++..++ -+..-.+||
T Consensus 947 ~~g~ptgsgkt~~ae~a~~-~~~~~~p~~kvvyIap~kalvker~~Dw~~r~~~~-g~k~ie~tgd~~pd-~~~v~~~~~ 1023 (1230)
T KOG0952|consen 947 LLGAPTGSGKTVVAELAIF-RALSYYPGSKVVYIAPDKALVKERSDDWSKRDELP-GIKVIELTGDVTPD-VKAVREADI 1023 (1230)
T ss_pred hhcCCccCcchhHHHHHHH-HHhccCCCccEEEEcCCchhhcccccchhhhcccC-CceeEeccCccCCC-hhheecCce
Confidence 4567899999999999886 5665 578899999888876444 444555555 99999988887665 344556899
Q ss_pred EEECCCcchhhHHHHhhccc--hhhhhccCCCCceEEEeecchhhhhccCCCce
Q 002515 95 TYTNNSELGFDYLRDNLAAN--SEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPL 146 (913)
Q Consensus 95 ~YgT~~e~~fDyLrD~l~~~--~~~~v~r~~R~~~~aIVDEvDsiLiDea~tPL 146 (913)
+..|+... |....+ .-..|+ .+...++||.+.. -+.|-|+
T Consensus 1024 ~ittpek~------dgi~Rsw~~r~~v~----~v~~iv~de~hll--g~~rgPV 1065 (1230)
T KOG0952|consen 1024 VITTPEKW------DGISRSWQTRKYVQ----SVSLIVLDEIHLL--GEDRGPV 1065 (1230)
T ss_pred EEcccccc------cCccccccchhhhc----cccceeecccccc--cCCCcce
Confidence 99998764 233321 112444 6888999998864 4445563
No 218
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=68.90 E-value=25 Score=42.11 Aligned_cols=107 Identities=16% Similarity=0.153 Sum_probs=63.4
Q ss_pred CCCchHHHHHHHHHHHHHc--CCcEEEEecCHHHHHHHHHHHHHHhh--------hcCCeEEEEcCCCCH-----HHHHh
Q 002515 24 TGEGKTLVSTLAAYLNALT--GEGVHVVTVNDYLAQRDAEWMERVHR--------FLGLSVGLIQRGMIP-----EERRS 88 (913)
Q Consensus 24 TGEGKTLva~lpa~l~AL~--G~~VhVvT~NdyLA~RDae~~~~~y~--------~LGLsv~~i~~~~~~-----~~r~~ 88 (913)
-|+|||.+.++-|...-.. ..++.+-+-|..|+..--.-...||- |=.+-+.+.-+|.+. .-++.
T Consensus 185 AGSGKT~~La~Kaa~lh~knPd~~I~~Tfftk~L~s~~r~lv~~F~f~~~e~~pdW~~~l~~h~wgG~t~~g~y~~~~~~ 264 (660)
T COG3972 185 AGSGKTELLAHKAAELHSKNPDSRIAFTFFTKILASTMRTLVPEFFFMRVEKQPDWGTKLFCHNWGGLTKEGFYGMYRYI 264 (660)
T ss_pred cCCCchhHHHHHHHHHhcCCCCceEEEEeehHHHHHHHHHHHHHHHHHHhhcCCCccceEEEeccCCCCCCcchHHHHHH
Confidence 4999999988877632222 23677888899999988888888873 222333444444432 22222
Q ss_pred ccCCCeEEECCCcchhhHHHHhhccchhhhhccCCCCceEEEeecchh
Q 002515 89 NYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDS 136 (913)
Q Consensus 89 aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs 136 (913)
+--..|.|+-.+. +||.+-..+-..... .. -+++++|||.-.
T Consensus 265 ~~~~~~~fsg~g~-~F~~aC~eli~~~~~--~~---~yD~ilIDE~QD 306 (660)
T COG3972 265 CHYYEIPFSGFGN-GFDAACKELIADINN--KK---AYDYILIDESQD 306 (660)
T ss_pred hcccccccCCCCc-chHHHHHHHHHhhhc--cc---cccEEEeccccc
Confidence 2233688884433 488775554332111 22 567777777643
No 219
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=67.92 E-value=5.6 Score=43.13 Aligned_cols=30 Identities=27% Similarity=0.250 Sum_probs=25.5
Q ss_pred cCCCchHHHHHHHHHHHHHcCCcEEEEecC
Q 002515 23 KTGEGKTLVSTLAAYLNALTGEGVHVVTVN 52 (913)
Q Consensus 23 ~TGEGKTLva~lpa~l~AL~G~~VhVvT~N 52 (913)
|.|.|||-+++-.|+..|..|++|.||=-.
T Consensus 8 KGGvGKTT~a~nLA~~la~~G~rvlliD~D 37 (267)
T cd02032 8 KGGIGKSTTSSNLSVALAKRGKKVLQIGCD 37 (267)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCcEEEEecC
Confidence 789999998887777789999999988553
No 220
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=67.84 E-value=15 Score=35.42 Aligned_cols=33 Identities=30% Similarity=0.321 Sum_probs=24.6
Q ss_pred EecCCCchHHHHHHHHHHHHHcCCcEEEEecCH
Q 002515 21 EMKTGEGKTLVSTLAAYLNALTGEGVHVVTVND 53 (913)
Q Consensus 21 Em~TGEGKTLva~lpa~l~AL~G~~VhVvT~Nd 53 (913)
.=+.|.|||.++...+...+-.|+.|.++....
T Consensus 5 ~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~ 37 (116)
T cd02034 5 TGKGGVGKTTIAALLARYLAEKGKPVLAIDADP 37 (116)
T ss_pred ECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCc
Confidence 447899998765555544566899999998776
No 221
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=67.23 E-value=8.2 Score=48.25 Aligned_cols=97 Identities=26% Similarity=0.293 Sum_probs=57.0
Q ss_pred eEEecCCCchHHHHHHHHHHHHHcC-C-----cEEEEe-cCH----HHHHHHHHHHHHHhhhcCCeEEEEcC-CCCHHHH
Q 002515 19 IAEMKTGEGKTLVSTLAAYLNALTG-E-----GVHVVT-VND----YLAQRDAEWMERVHRFLGLSVGLIQR-GMIPEER 86 (913)
Q Consensus 19 IaEm~TGEGKTLva~lpa~l~AL~G-~-----~VhVvT-~Nd----yLA~RDae~~~~~y~~LGLsv~~i~~-~~~~~~r 86 (913)
|+.=.||+|||.-.---.| .|=.| + |..=|| |-+ ..|+|-+.+|+. ||=.|+.... +.+
T Consensus 275 IIcGeTGsGKTTQvPQFLY-EAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~----~~~eVsYqIRfd~t---- 345 (1172)
T KOG0926|consen 275 IICGETGSGKTTQVPQFLY-EAGFASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGV----LGSEVSYQIRFDGT---- 345 (1172)
T ss_pred EEecCCCCCccccchHHHH-HcccCCccCCCCCeeeecCchHHHHHHHHHHHHHHhcc----CccceeEEEEeccc----
Confidence 7788999999975433333 22222 1 222233 333 567888888876 5666765321 000
Q ss_pred HhccCCCeEEECCCcchhhHHHHhhccchhhhhccCCCCceEEEeecchh
Q 002515 87 RSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDS 136 (913)
Q Consensus 87 ~~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs 136 (913)
..=...|-|-|-|=| ||. |.. +..++ .+.++||||||-
T Consensus 346 -i~e~T~IkFMTDGVL----LrE-i~~---DflL~---kYSvIIlDEAHE 383 (1172)
T KOG0926|consen 346 -IGEDTSIKFMTDGVL----LRE-IEN---DFLLT---KYSVIILDEAHE 383 (1172)
T ss_pred -cCCCceeEEecchHH----HHH-HHH---hHhhh---hceeEEechhhh
Confidence 011234888887753 443 332 45667 899999999995
No 222
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=66.10 E-value=21 Score=42.17 Aligned_cols=56 Identities=27% Similarity=0.310 Sum_probs=38.8
Q ss_pred cCCCchHHHHHHHHHHHH--HcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcC
Q 002515 23 KTGEGKTLVSTLAAYLNA--LTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQR 79 (913)
Q Consensus 23 ~TGEGKTLva~lpa~l~A--L~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLsv~~i~~ 79 (913)
.||.|||.+....+.... ..+..|.++|.+.|-. --.+++..+.+.+|+++..+..
T Consensus 199 pnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~ri-galEQL~~~a~ilGvp~~~v~~ 256 (420)
T PRK14721 199 PTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRI-GGHEQLRIYGKLLGVSVRSIKD 256 (420)
T ss_pred CCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcch-hHHHHHHHHHHHcCCceecCCC
Confidence 699999876554443222 2347899999988765 3355677777899999876644
No 223
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=65.90 E-value=1.6 Score=50.72 Aligned_cols=36 Identities=28% Similarity=0.261 Sum_probs=31.4
Q ss_pred CCchhHHHHHHHHhcCC--eEEecCCCchHHHHHHHHH
Q 002515 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAY 37 (913)
Q Consensus 2 rp~dvQl~g~l~L~~G~--IaEm~TGEGKTLva~lpa~ 37 (913)
-|.|||.-+++.++.|- +.-..||+|||=+|.+|++
T Consensus 24 lptdvqaeaiplilgggdvlmaaetgsgktgaf~lpil 61 (725)
T KOG0349|consen 24 LPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIL 61 (725)
T ss_pred cccccccccccEEecCCcEEEEeccCCCCccceehhhH
Confidence 48999999999888765 6777899999999999986
No 224
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=65.84 E-value=28 Score=43.81 Aligned_cols=60 Identities=18% Similarity=0.148 Sum_probs=43.7
Q ss_pred eEEecCCCchHHHHHHHHHHHHHcCC--cEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEc
Q 002515 19 IAEMKTGEGKTLVSTLAAYLNALTGE--GVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQ 78 (913)
Q Consensus 19 IaEm~TGEGKTLva~lpa~l~AL~G~--~VhVvT~NdyLA~RDae~~~~~y~~LGLsv~~i~ 78 (913)
++-..=|=|||.++.+.++..+=.+. .|.|..|+.+=.+--++-...=+++||++-.+..
T Consensus 235 vlTAdRGRGKSA~lGi~~~~~~~~~~~~~iiVTAP~~~nv~~Lf~fa~~~l~~lg~~~~v~~ 296 (758)
T COG1444 235 VLTADRGRGKSAALGIALAAAARLAGSVRIIVTAPTPANVQTLFEFAGKGLEFLGYKRKVAP 296 (758)
T ss_pred EEEcCCCCcHhHHHhHHHHHHHHhcCCceEEEeCCCHHHHHHHHHHHHHhHHHhCCcccccc
Confidence 67778899999998887765443333 5666677776666666777788889998866543
No 225
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=64.92 E-value=22 Score=32.51 Aligned_cols=35 Identities=29% Similarity=0.266 Sum_probs=26.9
Q ss_pred EEecCCCchHHHHHHHHHHHHHcCCcEEEEecCHH
Q 002515 20 AEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDY 54 (913)
Q Consensus 20 aEm~TGEGKTLva~lpa~l~AL~G~~VhVvT~Ndy 54 (913)
.-.+-|.|||.++...+...+-.|++|.++-.+..
T Consensus 5 ~~~kgG~Gkst~~~~la~~~~~~~~~vl~~d~d~~ 39 (104)
T cd02042 5 ANQKGGVGKTTTAVNLAAALARRGKRVLLIDLDPQ 39 (104)
T ss_pred EeCCCCcCHHHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence 44578999998666666556678999999987766
No 226
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=64.60 E-value=7.8 Score=42.02 Aligned_cols=31 Identities=26% Similarity=0.165 Sum_probs=25.2
Q ss_pred eEEecCCCchHHHHHHHHHHHHHcCCcEEEEe
Q 002515 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVT 50 (913)
Q Consensus 19 IaEm~TGEGKTLva~lpa~l~AL~G~~VhVvT 50 (913)
|+ .|-|.|||-+++-.|+..|..|++|.||=
T Consensus 7 v~-~KGGVGKTT~~~nLA~~la~~G~kVLliD 37 (270)
T PRK13185 7 VY-GKGGIGKSTTSSNLSAAFAKLGKKVLQIG 37 (270)
T ss_pred EE-CCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 45 48999999877777776789999999884
No 227
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=64.28 E-value=7.8 Score=41.18 Aligned_cols=33 Identities=27% Similarity=0.238 Sum_probs=25.3
Q ss_pred eEEecCCCchHHHHHHHHHHHHHcCCcEEEEec
Q 002515 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTV 51 (913)
Q Consensus 19 IaEm~TGEGKTLva~lpa~l~AL~G~~VhVvT~ 51 (913)
|+-.+.|.|||.+++-.|+..|-.|++|.+|=.
T Consensus 6 v~s~kGGvGKTt~a~~lA~~la~~g~~vlliD~ 38 (261)
T TIGR01968 6 ITSGKGGVGKTTTTANLGTALARLGKKVVLIDA 38 (261)
T ss_pred EecCCCCccHHHHHHHHHHHHHHcCCeEEEEEC
Confidence 456689999998777666656778999988843
No 228
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=64.21 E-value=18 Score=38.51 Aligned_cols=54 Identities=11% Similarity=0.182 Sum_probs=30.9
Q ss_pred CceEEEeecchhhhhcc---------------CCCceeccCCCCCCccchHHHHHHHHHhccCCCeEEeC
Q 002515 125 PFHFAIVDEVDSVLIDE---------------GRNPLLISGEASKDVARYPVAAKVAELLVQGLHYTVEL 179 (913)
Q Consensus 125 ~~~~aIVDEvDsiLiDe---------------a~tPLiiSg~~~~~~~~y~~~~~~v~~l~~~~~y~~d~ 179 (913)
..++++||.+|.+--.. ...++|+|+...... +-..-.++...|..+..+.+.+
T Consensus 97 ~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~-l~~~~~~L~SRl~~Gl~~~l~~ 165 (219)
T PF00308_consen 97 SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSE-LSGLLPDLRSRLSWGLVVELQP 165 (219)
T ss_dssp TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTT-TTTS-HHHHHHHHCSEEEEE--
T ss_pred cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCcc-ccccChhhhhhHhhcchhhcCC
Confidence 78889999888764322 246788876543322 1112356777777666666554
No 229
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=64.04 E-value=15 Score=43.13 Aligned_cols=53 Identities=19% Similarity=0.149 Sum_probs=35.7
Q ss_pred cCCCchHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEE
Q 002515 23 KTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGL 76 (913)
Q Consensus 23 ~TGEGKTLva~lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLsv~~ 76 (913)
.||.|||.+++..|+..+-.|+.|.+++...|=+. ..+++....+.+|+.+..
T Consensus 249 ptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~Ria-AvEQLk~yae~lgipv~v 301 (436)
T PRK11889 249 PTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIG-TVQQLQDYVKTIGFEVIA 301 (436)
T ss_pred CCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchH-HHHHHHHHhhhcCCcEEe
Confidence 49999997665555545677889999998766421 334455555667777653
No 230
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=64.04 E-value=8.2 Score=40.00 Aligned_cols=36 Identities=28% Similarity=0.254 Sum_probs=28.8
Q ss_pred eEEecCCCchHHHHHHHHHHHHHcCCcEEEEecCHH
Q 002515 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDY 54 (913)
Q Consensus 19 IaEm~TGEGKTLva~lpa~l~AL~G~~VhVvT~Ndy 54 (913)
|+-.+.|+|||.+++..|...|-.|++|.+|=.+..
T Consensus 22 v~s~kgG~GKTt~a~~LA~~la~~G~rVllID~D~~ 57 (204)
T TIGR01007 22 ITSVKPGEGKSTTSANIAVAFAQAGYKTLLIDGDMR 57 (204)
T ss_pred EecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 566788999998777777667889999999976644
No 231
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=63.58 E-value=8.1 Score=43.13 Aligned_cols=30 Identities=27% Similarity=0.274 Sum_probs=25.3
Q ss_pred ecCCCchHHHHHHHHHHHHHcCCcEEEEec
Q 002515 22 MKTGEGKTLVSTLAAYLNALTGEGVHVVTV 51 (913)
Q Consensus 22 m~TGEGKTLva~lpa~l~AL~G~~VhVvT~ 51 (913)
-|-|+|||.+++-.++..|..|++|.+|=-
T Consensus 7 gKGGvGKTT~a~nLA~~La~~g~rVLlID~ 36 (296)
T TIGR02016 7 GKGGSGKSFTTTNLSHMMAEMGKRVLQLGC 36 (296)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCeEEEEEe
Confidence 478999999888888878889999988754
No 232
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=63.09 E-value=29 Score=46.37 Aligned_cols=117 Identities=17% Similarity=0.133 Sum_probs=68.8
Q ss_pred chhHHHHHHHHhcCCeEEecCCCchHHHHHHHHHHHHHcCC---cEEEEecCHHHHH----HHHHHHHHHhhhcCCeEEE
Q 002515 4 FDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGE---GVHVVTVNDYLAQ----RDAEWMERVHRFLGLSVGL 76 (913)
Q Consensus 4 ~dvQl~g~l~L~~G~IaEm~TGEGKTLva~lpa~l~AL~G~---~VhVvT~NdyLA~----RDae~~~~~y~~LGLsv~~ 76 (913)
.+-|.-++-.-...-++...-|+|||.+.+--+.-..+.|. .+.|||.|.--|. |..+.+.....-
T Consensus 3 t~~Q~~ai~~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~~~~~~il~~tFt~~aa~e~~~ri~~~l~~~~~~------- 75 (1232)
T TIGR02785 3 TDEQWQAIYTRGQNILVSASAGSGKTAVLVERIIKKILRGVDIDRLLVVTFTNAAAREMKERIEEALQKALQQ------- 75 (1232)
T ss_pred CHHHHHHHhCCCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCHhhEEEEeccHHHHHHHHHHHHHHHHHHHhc-------
Confidence 34566555532223379999999999988776654455564 4889999997774 333333332220
Q ss_pred EcCCCCHHHHHhccCCCeEEECCCcchhhHHHHhhccchhhhhccCCCCceEEEeecchh
Q 002515 77 IQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDS 136 (913)
Q Consensus 77 i~~~~~~~~r~~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs 136 (913)
.+....-.+....-.....+|...|....||.+... ..+ +.+|-|.||.+.
T Consensus 76 -~p~~~~L~~q~~~~~~~~i~Tihsf~~~~~~~~~~~----l~l----dP~F~i~de~e~ 126 (1232)
T TIGR02785 76 -EPNSKHLRRQLALLNTANISTLHSFCLKVIRKHYYL----LDL----DPSFRILTDTEQ 126 (1232)
T ss_pred -CchhHHHHHHHhhccCCeEeeHHHHHHHHHHHhhhh----cCC----CCCceeCCHHHH
Confidence 011110111222223345599999999999887542 222 345567888876
No 233
>PHA02533 17 large terminase protein; Provisional
Probab=62.78 E-value=50 Score=40.22 Aligned_cols=68 Identities=15% Similarity=0.130 Sum_probs=45.0
Q ss_pred CchhHHHHHHHHhcCC--eEEecCCCchHHHHH-HHHHHHHH-cCCcEEEEecCHHHHHHHHHHHHHHhhhc
Q 002515 3 HFDVQIIGGAVLHDGS--IAEMKTGEGKTLVST-LAAYLNAL-TGEGVHVVTVNDYLAQRDAEWMERVHRFL 70 (913)
Q Consensus 3 p~dvQl~g~l~L~~G~--IaEm~TGEGKTLva~-lpa~l~AL-~G~~VhVvT~NdyLA~RDae~~~~~y~~L 70 (913)
+.|-|.--.-.++.++ ++.+.=.-|||.+++ +.+++.+. .|..|.++.++..-|+--++.+..+++.+
T Consensus 60 L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~~~~~~v~i~A~~~~QA~~vF~~ik~~ie~~ 131 (534)
T PHA02533 60 MRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCFNKDKNVGILAHKASMAAEVLDRTKQAIELL 131 (534)
T ss_pred CcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHhC
Confidence 3445543222234445 888888999997554 55553332 24478889999999998888888777644
No 234
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=62.03 E-value=5.5 Score=43.47 Aligned_cols=39 Identities=26% Similarity=0.379 Sum_probs=26.9
Q ss_pred hhhHHHHhhccchhhhhccCCCCceEEEeecchhhhhccC
Q 002515 103 GFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEG 142 (913)
Q Consensus 103 ~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea 142 (913)
|.|..|..+..-...+|.-.|..+.++|+||||||- +.|
T Consensus 91 GIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT-~gA 129 (333)
T KOG0991|consen 91 GIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMT-AGA 129 (333)
T ss_pred ccHHHHHHHHHHHHhhccCCCCceeEEEeeccchhh-hHH
Confidence 567778876544334454334578999999999995 544
No 235
>PRK05728 DNA polymerase III subunit chi; Validated
Probab=61.77 E-value=26 Score=35.08 Aligned_cols=52 Identities=25% Similarity=0.227 Sum_probs=44.4
Q ss_pred ChhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHC----CCCeEEecc
Q 002515 334 TARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQ----GIPHNVLNA 385 (913)
Q Consensus 334 t~~~k~~aii~ei~~~~~~grPVLI~t~Si~~SE~ls~~L~~~----gi~~~vLnA 385 (913)
+...+...++..+.+..++|..|+|.|.+.+.++.|-++|-.. -|||.+...
T Consensus 10 ~~~~~~~~~c~L~~ka~~~g~rv~I~~~d~~~a~~lD~~LW~~~~~sFlPH~~~~~ 65 (142)
T PRK05728 10 TLSALEALLCELAEKALRAGWRVLVQCEDEEQAEALDEALWTFRDESFLPHGLAGE 65 (142)
T ss_pred CchhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhcCCCCCcCCCCCcCCC
Confidence 5667888889999999999999999999999999999999664 489986443
No 236
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=61.58 E-value=12 Score=47.00 Aligned_cols=53 Identities=26% Similarity=0.436 Sum_probs=40.8
Q ss_pred cCCeEEecCCCchHH--HHHHHHHHHHHcC-----CcEEEEecCHHHHHHHHHHHHHHhhhcCC
Q 002515 16 DGSIAEMKTGEGKTL--VSTLAAYLNALTG-----EGVHVVTVNDYLAQRDAEWMERVHRFLGL 72 (913)
Q Consensus 16 ~G~IaEm~TGEGKTL--va~lpa~l~AL~G-----~~VhVvT~NdyLA~RDae~~~~~y~~LGL 72 (913)
.|.|.-=.-|.|||+ ++.|-.||.---+ ....||+|.--|- .|-..|.+|+|.
T Consensus 264 ~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~~~~k~lVV~P~sLv~----nWkkEF~KWl~~ 323 (776)
T KOG0390|consen 264 GGCIMADEPGLGKTLQCISFIWTLLRQFPQAKPLINKPLVVAPSSLVN----NWKKEFGKWLGN 323 (776)
T ss_pred CceEeeCCCCcchHHHHHHHHHHHHHhCcCccccccccEEEccHHHHH----HHHHHHHHhccc
Confidence 466666677999997 5666677655556 7889999977665 599999999995
No 237
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=61.13 E-value=29 Score=41.34 Aligned_cols=105 Identities=14% Similarity=0.095 Sum_probs=61.7
Q ss_pred eEEecCCCchHH-HHHHHHHHHHHcC---CcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHH-hccCCC
Q 002515 19 IAEMKTGEGKTL-VSTLAAYLNALTG---EGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERR-SNYRCD 93 (913)
Q Consensus 19 IaEm~TGEGKTL-va~lpa~l~AL~G---~~VhVvT~NdyLA~RDae~~~~~y~~LGLsv~~i~~~~~~~~r~-~aY~~D 93 (913)
+++|.=|-|||. ++++.+|...+.| ..|.++.++..-|+.-+..+..+.+....-..... .+. ..+...
T Consensus 26 ~l~v~RkNGKS~l~a~i~ly~l~~~g~~~~~i~~~A~~~~QA~~~f~~~~~~i~~~~~l~~~~~------~~~~~~~~~~ 99 (477)
T PF03354_consen 26 YLEVPRKNGKSTLAAAIALYMLFLDGEPGAEIYCAANTRDQAKIVFDEAKKMIEASPELRKRKK------PKIIKSNKKE 99 (477)
T ss_pred EEEEcCccCccHHHHHHHHHHHhcCCccCceEEEEeCCHHHHHHHHHHHHHHHHhChhhccchh------hhhhhhhceE
Confidence 789999999986 5666666554443 56888899999999888888877765111110000 001 123345
Q ss_pred eEEEC-CCcchhhHHHHhhccchhhhhccCCCCceEEEeecchhhh
Q 002515 94 ITYTN-NSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (913)
Q Consensus 94 I~YgT-~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiL 138 (913)
|++-. ++.|. + ++.+ ...+++. ..+++|+||+|..=
T Consensus 100 i~~~~~~s~~~--~----~s~~--~~~~dG~-~~~~~i~DE~h~~~ 136 (477)
T PF03354_consen 100 IEFPKTGSFFK--A----LSSD--ADSLDGL-NPSLAIFDELHAHK 136 (477)
T ss_pred EEEcCCCcEEE--E----EecC--CCCccCC-CCceEEEeCCCCCC
Confidence 66544 33321 1 1211 2223322 46899999999864
No 238
>PLN03025 replication factor C subunit; Provisional
Probab=60.33 E-value=17 Score=40.75 Aligned_cols=14 Identities=36% Similarity=0.527 Sum_probs=12.3
Q ss_pred CceEEEeecchhhh
Q 002515 125 PFHFAIVDEVDSVL 138 (913)
Q Consensus 125 ~~~~aIVDEvDsiL 138 (913)
+..++||||||.|-
T Consensus 99 ~~kviiiDE~d~lt 112 (319)
T PLN03025 99 RHKIVILDEADSMT 112 (319)
T ss_pred CeEEEEEechhhcC
Confidence 57899999999974
No 239
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=60.18 E-value=23 Score=36.84 Aligned_cols=32 Identities=31% Similarity=0.430 Sum_probs=18.1
Q ss_pred eEEecCCCchHH-HHHHHHHHHHH-cCCcEEEEe
Q 002515 19 IAEMKTGEGKTL-VSTLAAYLNAL-TGEGVHVVT 50 (913)
Q Consensus 19 IaEm~TGEGKTL-va~lpa~l~AL-~G~~VhVvT 50 (913)
++++-||.||-- +|+|-.++.|+ .|.+|.++=
T Consensus 5 ~i~vytG~GKGKTTAAlGlalRA~G~G~rV~ivQ 38 (172)
T PF02572_consen 5 LIQVYTGDGKGKTTAALGLALRAAGHGMRVLIVQ 38 (172)
T ss_dssp -EEEEESSSS-HHHHHHHHHHHHHCTT--EEEEE
T ss_pred EEEEEeCCCCCchHHHHHHHHHHHhCCCEEEEEE
Confidence 467778777632 35555555665 588898874
No 240
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=60.09 E-value=14 Score=41.73 Aligned_cols=114 Identities=18% Similarity=0.098 Sum_probs=61.1
Q ss_pred eEEecCCCchHHHHHHHHHHHHHcCCc-EEEEecCHHH---HHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHHhccCCCe
Q 002515 19 IAEMKTGEGKTLVSTLAAYLNALTGEG-VHVVTVNDYL---AQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNYRCDI 94 (913)
Q Consensus 19 IaEm~TGEGKTLva~lpa~l~AL~G~~-VhVvT~NdyL---A~RDae~~~~~y~~LGLsv~~i~~~~~~~~r~~aY~~DI 94 (913)
+.==.||-||.-+.+-.++-|.|.|+. ..-||+|+-| |+||...++.- .+.+-.+.. ++.. .......+|
T Consensus 66 ~lGDGtGvGKGR~iAgiI~~n~l~Gr~r~vwvS~s~dL~~Da~RDl~DIG~~----~i~v~~l~~-~~~~-~~~~~~~Gv 139 (303)
T PF13872_consen 66 FLGDGTGVGKGRQIAGIILENWLRGRKRAVWVSVSNDLKYDAERDLRDIGAD----NIPVHPLNK-FKYG-DIIRLKEGV 139 (303)
T ss_pred EeccCCCcCccchhHHHHHHHHHcCCCceEEEECChhhhhHHHHHHHHhCCC----cccceechh-hccC-cCCCCCCCc
Confidence 566679999987655555558999985 6678887755 77777765521 233222211 1111 112345678
Q ss_pred EEECCCcchhhHHHHh-hccchhhhhccC-CCCceEEEeecchhhh
Q 002515 95 TYTNNSELGFDYLRDN-LAANSEQLVMRW-PKPFHFAIVDEVDSVL 138 (913)
Q Consensus 95 ~YgT~~e~~fDyLrD~-l~~~~~~~v~r~-~R~~~~aIVDEvDsiL 138 (913)
+++|=+.|.-..=... -..+.++++.=. .-.-.++|+||+|.+=
T Consensus 140 lF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~ak 185 (303)
T PF13872_consen 140 LFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHKAK 185 (303)
T ss_pred cchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccchhcC
Confidence 8888776432110000 001111222100 1123589999999863
No 241
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=59.93 E-value=9.9 Score=40.41 Aligned_cols=48 Identities=29% Similarity=0.373 Sum_probs=31.6
Q ss_pred hhHHHHHHHHhcCC--eEEecCCCchHHHHHHHHHHHHHcCCcEEEEecCHH
Q 002515 5 DVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDY 54 (913)
Q Consensus 5 dvQl~g~l~L~~G~--IaEm~TGEGKTLva~lpa~l~AL~G~~VhVvT~Ndy 54 (913)
|.++-|| +-.|. ++.-.+|.|||..+.--++-.+..|..|..+|.-+-
T Consensus 15 D~~l~gG--~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~ 64 (234)
T PRK06067 15 DRKLGGG--IPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENT 64 (234)
T ss_pred HHhhCCC--CcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCC
Confidence 4444344 23566 445589999998766666544567999988888443
No 242
>COG2927 HolC DNA polymerase III, chi subunit [DNA replication, recombination, and repair]
Probab=59.61 E-value=19 Score=36.52 Aligned_cols=80 Identities=24% Similarity=0.274 Sum_probs=57.7
Q ss_pred EEeChhHHHH-HHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHH----CCCCeEEeccCCcchhhHHHHHHhcCCCcc
Q 002515 331 SFATARGKWE-YARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQ----QGIPHNVLNARPKYAAREAETVAQAGRKYA 405 (913)
Q Consensus 331 v~~t~~~k~~-aii~ei~~~~~~grPVLI~t~Si~~SE~ls~~L~~----~gi~~~vLnA~~k~~~~Ea~Iia~AG~~G~ 405 (913)
+|...+++.. +++..+.++...|.+|||-|.|.+..+.|-+.|-. .-|||+.--.. ..+++|
T Consensus 6 FY~l~~~~~~~~~c~L~~k~~~~G~rvlI~~~d~~q~e~LD~~LWt~~~~sFiPH~~~~e~-----------~~~~qP-- 72 (144)
T COG2927 6 FYLLSESTLLAAACRLAEKAWRSGWRVLIQCEDEAQAEALDEHLWTFSAESFIPHNLAGEP-----------PPAGQP-- 72 (144)
T ss_pred EEEecchhHHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHhhhccchhcccCCccCCCC-----------CCCCCC--
Confidence 4666666665 77888889999999999999999999999999954 45898763210 124445
Q ss_pred EEEEc---CCCCCCcceecCC
Q 002515 406 ITIST---NMAGRGTDIILGG 423 (913)
Q Consensus 406 VTIAT---nmAGRGTDIkLgg 423 (913)
|.|++ |-.++=.|+.+++
T Consensus 73 Ili~~~~~~pn~~~~~~lInl 93 (144)
T COG2927 73 ILIAWPGGNPNSARVDLLINL 93 (144)
T ss_pred EEEEcCCCCCCCCceeEEEec
Confidence 77776 4455555666654
No 243
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=59.42 E-value=25 Score=43.75 Aligned_cols=64 Identities=20% Similarity=0.024 Sum_probs=46.3
Q ss_pred CCchhHHHHHHHHh----cC---CeEEecCCCchHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhh
Q 002515 2 RHFDVQIIGGAVLH----DG---SIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHR 68 (913)
Q Consensus 2 rp~dvQl~g~l~L~----~G---~IaEm~TGEGKTLva~lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~ 68 (913)
.|..-|.-..-.+. +| .++.-.||.|||++++- + ..-.++.+.|||+|..+|.+-++++..++.
T Consensus 12 ~~~~~Q~~ai~~l~~~~~~~~~~~ll~Gl~gs~ka~lia~--l-~~~~~r~vLIVt~~~~~A~~l~~dL~~~~~ 82 (652)
T PRK05298 12 KPAGDQPQAIEELVEGIEAGEKHQTLLGVTGSGKTFTMAN--V-IARLQRPTLVLAHNKTLAAQLYSEFKEFFP 82 (652)
T ss_pred CCChHHHHHHHHHHHhhhcCCCcEEEEcCCCcHHHHHHHH--H-HHHhCCCEEEEECCHHHHHHHHHHHHHhcC
Confidence 46666766555442 33 36778899999987542 2 233578999999999999998888877653
No 244
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=59.41 E-value=10 Score=44.32 Aligned_cols=33 Identities=36% Similarity=0.401 Sum_probs=27.1
Q ss_pred eEEecCCCchHHHHHHHHHHHHHcCCcEEEEec
Q 002515 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTV 51 (913)
Q Consensus 19 IaEm~TGEGKTLva~lpa~l~AL~G~~VhVvT~ 51 (913)
|+-.|-|.|||.+++-.|+..|+.|++|.||=-
T Consensus 126 v~n~KGGvGKTTta~nLA~~LA~~G~rVLlIDl 158 (405)
T PRK13869 126 VTNFKGGSGKTTTSAHLAQYLALQGYRVLAVDL 158 (405)
T ss_pred EEcCCCCCCHHHHHHHHHHHHHhcCCceEEEcC
Confidence 566689999998877777778999999988843
No 245
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=59.39 E-value=13 Score=42.58 Aligned_cols=32 Identities=25% Similarity=0.196 Sum_probs=18.9
Q ss_pred eEEecCCCchHHHHHHHHHHHHHc--CCcEEEEecC
Q 002515 19 IAEMKTGEGKTLVSTLAAYLNALT--GEGVHVVTVN 52 (913)
Q Consensus 19 IaEm~TGEGKTLva~lpa~l~AL~--G~~VhVvT~N 52 (913)
+.-=.+|.|||.++--.+ +.+. +.++.++..|
T Consensus 59 lI~G~~GtGKT~l~~~v~--~~l~~~~~~~~~v~in 92 (394)
T PRK00411 59 LIYGPPGTGKTTTVKKVF--EELEEIAVKVVYVYIN 92 (394)
T ss_pred EEECCCCCCHHHHHHHHH--HHHHHhcCCcEEEEEE
Confidence 666789999998654443 2332 2245555554
No 246
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=59.22 E-value=19 Score=46.15 Aligned_cols=120 Identities=20% Similarity=0.371 Sum_probs=71.7
Q ss_pred CCCchhHHHHHHH-HhcCC---eEEecCCCchHH-HHHHHHHHHHHcC-C-cEEEEecCHHHHHHHHHHHHHHhhhcCCe
Q 002515 1 MRHFDVQIIGGAV-LHDGS---IAEMKTGEGKTL-VSTLAAYLNALTG-E-GVHVVTVNDYLAQRDAEWMERVHRFLGLS 73 (913)
Q Consensus 1 ~rp~dvQl~g~l~-L~~G~---IaEm~TGEGKTL-va~lpa~l~AL~G-~-~VhVvT~NdyLA~RDae~~~~~y~~LGLs 73 (913)
+++|....+=.++ |.+|+ |.-=.+|=|||+ +..|.+||.--.+ . +-.||+|+..|.. |--.|-.|. =|
T Consensus 395 Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQtIsLitYLmE~K~~~GP~LvivPlstL~N----W~~Ef~kWa-PS 469 (1157)
T KOG0386|consen 395 LKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQTISLITYLMEHKQMQGPFLIIVPLSTLVN----WSSEFPKWA-PS 469 (1157)
T ss_pred CchhhhhhhHHHhhccCCCcccccchhcccchHHHHHHHHHHHHHHcccCCCeEEeccccccCC----chhhccccc-cc
Confidence 4566666555554 45666 343468999998 6788888654332 2 4578999998875 555554443 45
Q ss_pred EEEEcCCCCHHHHHhcc------CCCeEEECCCcchhhHHHHhhccchhhhhccCCCCceEEEeecchhh
Q 002515 74 VGLIQRGMIPEERRSNY------RCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV 137 (913)
Q Consensus 74 v~~i~~~~~~~~r~~aY------~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsi 137 (913)
+..|...-++++|+.-. ..+|.-.| ++|+.. .+ .+.... .-.|.||||-|.|
T Consensus 470 v~~i~YkGtp~~R~~l~~qir~gKFnVLlTt-----yEyiik----dk-~lLsKI--~W~yMIIDEGHRm 527 (1157)
T KOG0386|consen 470 VQKIQYKGTPQQRSGLTKQQRHGKFNVLLTT-----YEYIIK----DK-ALLSKI--SWKYMIIDEGHRM 527 (1157)
T ss_pred eeeeeeeCCHHHHhhHHHHHhcccceeeeee-----HHHhcC----CH-HHHhcc--CCcceeecccccc
Confidence 56665555677765322 34666555 445421 11 111110 4579999999976
No 247
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=59.17 E-value=12 Score=39.66 Aligned_cols=34 Identities=29% Similarity=0.331 Sum_probs=27.6
Q ss_pred EEecCCCchHHHHHHHHHHHHHcCCcEEEEecCH
Q 002515 20 AEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVND 53 (913)
Q Consensus 20 aEm~TGEGKTLva~lpa~l~AL~G~~VhVvT~Nd 53 (913)
+--+=|.|||.+++-.|+..|..|++|.+|=...
T Consensus 7 ~s~KGGvGKTt~a~nla~~la~~g~~VlliD~D~ 40 (246)
T TIGR03371 7 VGVKGGVGKTTLTANLASALKLLGEPVLAIDLDP 40 (246)
T ss_pred EeCCCCccHHHHHHHHHHHHHhCCCcEEEEeCCC
Confidence 3446799999988777777788999999998764
No 248
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=58.79 E-value=7.1 Score=39.72 Aligned_cols=46 Identities=24% Similarity=0.163 Sum_probs=27.8
Q ss_pred HHHhccCCCeEEECCCcchhhHHHHhhccchhhhhccCCCCceEEEeecchhhh
Q 002515 85 ERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (913)
Q Consensus 85 ~r~~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiL 138 (913)
.|..+..|||+.++-+ ||.+-.....-..... +-.++||||||.+.
T Consensus 113 ~r~~~~~adivi~~y~-----yl~~~~~~~~~~~~~~---~~~ivI~DEAHNL~ 158 (174)
T PF06733_consen 113 ARELAKNADIVICNYN-----YLFDPSIRKSLFGIDL---KDNIVIFDEAHNLE 158 (174)
T ss_dssp HHHCGGG-SEEEEETH-----HHHSHHHHHHHCT--C---CCEEEEETTGGGCG
T ss_pred HHHhcccCCEEEeCHH-----HHhhHHHHhhhccccc---cCcEEEEecccchH
Confidence 4677888999998865 4443322211111223 56899999999975
No 249
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=58.76 E-value=11 Score=39.58 Aligned_cols=28 Identities=32% Similarity=0.201 Sum_probs=23.0
Q ss_pred cCCCchHHHHHHHHHHHHHcCCcEEEEe
Q 002515 23 KTGEGKTLVSTLAAYLNALTGEGVHVVT 50 (913)
Q Consensus 23 ~TGEGKTLva~lpa~l~AL~G~~VhVvT 50 (913)
|=|.|||.+++-.|+..|-.|++|.||=
T Consensus 8 KGGvGKTt~~~nLA~~la~~G~rvLliD 35 (212)
T cd02117 8 KGGIGKSTTSQNLSAALAEMGKKVLQVG 35 (212)
T ss_pred CCcCcHHHHHHHHHHHHHHCCCcEEEEe
Confidence 6799999977777777788999998873
No 250
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=58.54 E-value=30 Score=43.08 Aligned_cols=108 Identities=27% Similarity=0.274 Sum_probs=68.5
Q ss_pred CCCchhHHHHHHHHhcCC-eEEecCCCchHHHHHHHHHHHHH-cC---CcEEEEecCHHHHHHHHHHHHHHhhhcCCeEE
Q 002515 1 MRHFDVQIIGGAVLHDGS-IAEMKTGEGKTLVSTLAAYLNAL-TG---EGVHVVTVNDYLAQRDAEWMERVHRFLGLSVG 75 (913)
Q Consensus 1 ~rp~dvQl~g~l~L~~G~-IaEm~TGEGKTLva~lpa~l~AL-~G---~~VhVvT~NdyLA~RDae~~~~~y~~LGLsv~ 75 (913)
|+.-+-|.-++-. ..|. ++-..-|+|||.|.+--+...-. .| ..+.++|.|.--|.--.+ .+-..+|-..
T Consensus 1 ~~Ln~~Q~~av~~-~~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v~p~~IL~lTFT~kAA~em~~---Rl~~~l~~~~- 75 (672)
T PRK10919 1 MRLNPGQQQAVEF-VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKE---RVAQTLGRKE- 75 (672)
T ss_pred CCCCHHHHHHHhC-CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeeeEechHHHHHHHHH---HHHHHhCccc-
Confidence 4556677665543 3566 77888999999876665542111 23 478999999998873222 2333444210
Q ss_pred EEcCCCCHHHHHhccCCCeEEECCCcchhhHHHHhhccchhhhhccCCCCceEEEeecchh
Q 002515 76 LIQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDS 136 (913)
Q Consensus 76 ~i~~~~~~~~r~~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs 136 (913)
...|..+|...|++..||..... ... +.+|-|+|+.|.
T Consensus 76 ---------------~~~v~i~TfHS~~~~iLr~~~~~----~g~----~~~~~i~d~~~~ 113 (672)
T PRK10919 76 ---------------ARGLMISTFHTLGLDIIKREYAA----LGM----KSNFSLFDDTDQ 113 (672)
T ss_pred ---------------ccCcEEEcHHHHHHHHHHHHHHH----hCC----CCCCeeCCHHHH
Confidence 12478899999999999874321 111 235778898876
No 251
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=57.79 E-value=1e+02 Score=33.77 Aligned_cols=51 Identities=16% Similarity=0.004 Sum_probs=28.6
Q ss_pred eEEecCCCchHHHHHHHHHHHHHcCC---cEEEEecCHHHHHH---HHHHHHHHhhh
Q 002515 19 IAEMKTGEGKTLVSTLAAYLNALTGE---GVHVVTVNDYLAQR---DAEWMERVHRF 69 (913)
Q Consensus 19 IaEm~TGEGKTLva~lpa~l~AL~G~---~VhVvT~NdyLA~R---Dae~~~~~y~~ 69 (913)
|..+.-|.|||.+.++.++..++... .|.++.+++.|+.. ...++..+...
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~ 57 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTRPPGRRVIIASTYRQARDIFGRFWKGIIELLPS 57 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSSSS--EEEEEESSHHHHHHHHHHHHHHHHTS-T
T ss_pred CCcCCccccHHHHHHHHHHHHHhhCCCCcEEEEecCHHHHHHHHHHhHHHHHHHHHH
Confidence 45678899999987777776777654 34445444444443 44445555444
No 252
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=57.34 E-value=11 Score=40.80 Aligned_cols=29 Identities=28% Similarity=0.220 Sum_probs=23.9
Q ss_pred cCCCchHHHHHHHHHHHHHcCCcEEEEec
Q 002515 23 KTGEGKTLVSTLAAYLNALTGEGVHVVTV 51 (913)
Q Consensus 23 ~TGEGKTLva~lpa~l~AL~G~~VhVvT~ 51 (913)
|-|.|||.+++-.|+..|..|++|.||=-
T Consensus 8 KGGVGKTT~~~nLA~~La~~g~rVLliD~ 36 (268)
T TIGR01281 8 KGGIGKSTTSSNLSVAFAKLGKRVLQIGC 36 (268)
T ss_pred CCcCcHHHHHHHHHHHHHhCCCeEEEEec
Confidence 77999999777777767889999998843
No 253
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=57.30 E-value=12 Score=43.25 Aligned_cols=33 Identities=30% Similarity=0.385 Sum_probs=26.4
Q ss_pred eEEecCCCchHHHHHHHHHHHHHcCCcEEEEec
Q 002515 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTV 51 (913)
Q Consensus 19 IaEm~TGEGKTLva~lpa~l~AL~G~~VhVvT~ 51 (913)
|+--|-|+|||.+++-.|+..|..|++|.+|=-
T Consensus 109 v~n~KGGvGKTT~a~nLA~~La~~G~rVLlID~ 141 (387)
T TIGR03453 109 VTNFKGGSGKTTTAAHLAQYLALRGYRVLAIDL 141 (387)
T ss_pred EEccCCCcCHHHHHHHHHHHHHhcCCCEEEEec
Confidence 456778999998777777667889999998854
No 254
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=57.27 E-value=50 Score=34.21 Aligned_cols=38 Identities=26% Similarity=0.402 Sum_probs=26.4
Q ss_pred cCCeEEe--cCCCchHHHHHHHHHHHHHcCCcEEEEecCH
Q 002515 16 DGSIAEM--KTGEGKTLVSTLAAYLNALTGEGVHVVTVND 53 (913)
Q Consensus 16 ~G~IaEm--~TGEGKTLva~lpa~l~AL~G~~VhVvT~Nd 53 (913)
.|.+.++ .+|.|||..+.-.++-.+-.|.+|..++.-.
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~ 50 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG 50 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 5665554 6999999887766664445677777777643
No 255
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=57.03 E-value=12 Score=40.78 Aligned_cols=28 Identities=32% Similarity=0.229 Sum_probs=24.1
Q ss_pred cCCCchHHHHHHHHHHHHHcCCcEEEEe
Q 002515 23 KTGEGKTLVSTLAAYLNALTGEGVHVVT 50 (913)
Q Consensus 23 ~TGEGKTLva~lpa~l~AL~G~~VhVvT 50 (913)
|-|-|||.+++=.|+..|-.|++|.||=
T Consensus 9 KGGVGKTT~~~nLA~~La~~G~rVLlID 36 (274)
T PRK13235 9 KGGIGKSTTTQNTVAGLAEMGKKVMVVG 36 (274)
T ss_pred CCCccHHHHHHHHHHHHHHCCCcEEEEe
Confidence 7899999987777777889999999883
No 256
>PRK10037 cell division protein; Provisional
Probab=56.69 E-value=13 Score=40.12 Aligned_cols=35 Identities=23% Similarity=0.368 Sum_probs=26.8
Q ss_pred eEEecCCCchHHHHHHHHHHHHHcCCcEEEEecCH
Q 002515 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVND 53 (913)
Q Consensus 19 IaEm~TGEGKTLva~lpa~l~AL~G~~VhVvT~Nd 53 (913)
++--|=|.|||.+++-.|+..|..|++|.||=-..
T Consensus 6 v~n~KGGvGKTT~a~nLA~~La~~G~rVLlID~D~ 40 (250)
T PRK10037 6 LQGVRGGVGTTSITAALAWSLQMLGENVLVIDACP 40 (250)
T ss_pred EecCCCCccHHHHHHHHHHHHHhcCCcEEEEeCCh
Confidence 34456799999877777767889999999995433
No 257
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=56.58 E-value=13 Score=39.19 Aligned_cols=31 Identities=32% Similarity=0.337 Sum_probs=24.2
Q ss_pred ecCCCchHHHHHHHHHHHHHcCCcEEEEecC
Q 002515 22 MKTGEGKTLVSTLAAYLNALTGEGVHVVTVN 52 (913)
Q Consensus 22 m~TGEGKTLva~lpa~l~AL~G~~VhVvT~N 52 (913)
-+.|+|||.+++-.+...|-.|+.|++|...
T Consensus 6 g~~g~Gkt~~~~~la~~~a~~g~~~~l~~~d 36 (217)
T cd02035 6 GKGGVGKTTIAAATAVRLAEEGKKVLLVSTD 36 (217)
T ss_pred CCCCchHHHHHHHHHHHHHHCCCcEEEEECC
Confidence 3689999987655565578889999999864
No 258
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=56.48 E-value=38 Score=42.82 Aligned_cols=57 Identities=14% Similarity=0.042 Sum_probs=37.7
Q ss_pred hhHHHHHHHHhcC-C--eEEecCCCchHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHH
Q 002515 5 DVQIIGGAVLHDG-S--IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAE 61 (913)
Q Consensus 5 dvQl~g~l~L~~G-~--IaEm~TGEGKTLva~lpa~l~AL~G~~VhVvT~NdyLA~RDae 61 (913)
+-|.-++-.+..+ + ++.=..|.|||.+.-....+....|..|.+++|+.--|++=.+
T Consensus 355 ~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll~~i~~~~~~~g~~V~~~ApTg~Aa~~L~~ 414 (744)
T TIGR02768 355 EEQYEAVRHVTGSGDIAVVVGRAGTGKSTMLKAAREAWEAAGYRVIGAALSGKAAEGLQA 414 (744)
T ss_pred HHHHHHHHHHhcCCCEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHh
Confidence 4465555555553 4 6777899999865433333334469999999999877775543
No 259
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=56.25 E-value=22 Score=41.96 Aligned_cols=14 Identities=14% Similarity=0.434 Sum_probs=11.7
Q ss_pred CceEEEeecchhhh
Q 002515 125 PFHFAIVDEVDSVL 138 (913)
Q Consensus 125 ~~~~aIVDEvDsiL 138 (913)
..+++||||+|.++
T Consensus 194 ~~dvLlIDDi~~l~ 207 (440)
T PRK14088 194 KVDVLLIDDVQFLI 207 (440)
T ss_pred cCCEEEEechhhhc
Confidence 47899999999864
No 260
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=55.88 E-value=14 Score=39.11 Aligned_cols=33 Identities=30% Similarity=0.285 Sum_probs=25.4
Q ss_pred eEEecCCCchHHHHHHHHHHHHHcCCcEEEEec
Q 002515 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTV 51 (913)
Q Consensus 19 IaEm~TGEGKTLva~lpa~l~AL~G~~VhVvT~ 51 (913)
++-.+-|.|||.+++-.|+..|..|++|.+|=-
T Consensus 5 v~~~KGGvGKTt~a~~LA~~la~~g~~VlliD~ 37 (251)
T TIGR01969 5 IASGKGGTGKTTITANLGVALAKLGKKVLALDA 37 (251)
T ss_pred EEcCCCCCcHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 345678999998777666667788998988854
No 261
>PRK11054 helD DNA helicase IV; Provisional
Probab=55.66 E-value=33 Score=42.91 Aligned_cols=84 Identities=21% Similarity=0.181 Sum_probs=56.1
Q ss_pred hhHHHHHHHHhcCCeEEecCCCchHHHHHHH-HHHHH---HcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCC
Q 002515 5 DVQIIGGAVLHDGSIAEMKTGEGKTLVSTLA-AYLNA---LTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRG 80 (913)
Q Consensus 5 dvQl~g~l~L~~G~IaEm~TGEGKTLva~lp-a~l~A---L~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLsv~~i~~~ 80 (913)
+-|-.++..-....++...-|+|||.|.+-- +||.. ..+..|.++|.|+-.|..-.+.+. ..+|.
T Consensus 199 ~~Q~~av~~~~~~~lV~agaGSGKT~vl~~r~ayLl~~~~~~~~~IL~ltft~~AA~em~eRL~---~~lg~-------- 267 (684)
T PRK11054 199 PSQARAVVNGEDSLLVLAGAGSGKTSVLVARAGWLLARGQAQPEQILLLAFGRQAAEEMDERIR---ERLGT-------- 267 (684)
T ss_pred HHHHHHHhCCCCCeEEEEeCCCCHHHHHHHHHHHHHHhCCCCHHHeEEEeccHHHHHHHHHHHH---HhcCC--------
Confidence 4455554433333488889999999876544 44321 234589999999999975444443 44441
Q ss_pred CCHHHHHhccCCCeEEECCCcchhhHHHHh
Q 002515 81 MIPEERRSNYRCDITYTNNSELGFDYLRDN 110 (913)
Q Consensus 81 ~~~~~r~~aY~~DI~YgT~~e~~fDyLrD~ 110 (913)
.+|..+|...|++..|++.
T Consensus 268 -----------~~v~v~TFHSlal~Il~~~ 286 (684)
T PRK11054 268 -----------EDITARTFHALALHIIQQG 286 (684)
T ss_pred -----------CCcEEEeHHHHHHHHHHHh
Confidence 2488899999999888875
No 262
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=55.65 E-value=9.5 Score=46.38 Aligned_cols=113 Identities=24% Similarity=0.224 Sum_probs=54.8
Q ss_pred EEecCCCchHHH-HHHHHHHHHHcCCcE--EEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHH-hcc-----
Q 002515 20 AEMKTGEGKTLV-STLAAYLNALTGEGV--HVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERR-SNY----- 90 (913)
Q Consensus 20 aEm~TGEGKTLv-a~lpa~l~AL~G~~V--hVvT~NdyLA~RDae~~~~~y~~LGLsv~~i~~~~~~~~r~-~aY----- 90 (913)
-+|+||+|||++ |+|..+ .--.|.+- ..|-.+..|-+-.-.-..++..-.=.+-...+++...+.|+ ..+
T Consensus 2 f~matgsgkt~~ma~lil~-~y~kgyr~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~ikkvn~fsehnd 80 (812)
T COG3421 2 FEMATGSGKTLVMAGLILE-CYKKGYRNFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEIKKVNNFSEHND 80 (812)
T ss_pred cccccCCChhhHHHHHHHH-HHHhchhhEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeeeeeecccCccCC
Confidence 479999999996 444444 33456443 44555566666544433333321111211222222222221 111
Q ss_pred CCCeEEECCCcchhhHHHHhhcc-chhhhhccCCCCceEEEeecchhh
Q 002515 91 RCDITYTNNSELGFDYLRDNLAA-NSEQLVMRWPKPFHFAIVDEVDSV 137 (913)
Q Consensus 91 ~~DI~YgT~~e~~fDyLrD~l~~-~~~~~v~r~~R~~~~aIVDEvDsi 137 (913)
+-.|.++|.-.+--|+.|..=.. ..++.- . .-=+.|-||+|.+
T Consensus 81 ~iei~fttiq~l~~d~~~~ken~itledl~-~---~klvfl~deahhl 124 (812)
T COG3421 81 AIEIYFTTIQGLFSDFTRAKENAITLEDLK-D---QKLVFLADEAHHL 124 (812)
T ss_pred ceEEEEeehHHHHHHHHhhccccccHhhHh-h---CceEEEechhhhh
Confidence 23689999877755655432111 111111 1 1235677999986
No 263
>COG0210 UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]
Probab=55.07 E-value=5e+02 Score=32.14 Aligned_cols=106 Identities=24% Similarity=0.163 Sum_probs=67.2
Q ss_pred chhHHHHHHHHhcCCeEEecCCCchHHHHHHHHH-HHHHcC---CcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcC
Q 002515 4 FDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAY-LNALTG---EGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQR 79 (913)
Q Consensus 4 ~dvQl~g~l~L~~G~IaEm~TGEGKTLva~lpa~-l~AL~G---~~VhVvT~NdyLA~RDae~~~~~y~~LGLsv~~i~~ 79 (913)
-+-|-.++.......++...-|+|||-|.+--+. +-.-.| ..+.+||-+.--|..--+ .+-..+|..
T Consensus 4 n~~Q~~av~~~~gp~lV~AGaGsGKT~vlt~Ria~li~~~~v~p~~Il~vTFTnkAA~em~~---Rl~~~~~~~------ 74 (655)
T COG0210 4 NPEQREAVLHPDGPLLVLAGAGSGKTRVLTERIAYLIAAGGVDPEQILAITFTNKAAAEMRE---RLLKLLGLP------ 74 (655)
T ss_pred CHHHHHHHhcCCCCeEEEECCCCCchhhHHHHHHHHHHcCCcChHHeeeeechHHHHHHHHH---HHHHHhCcc------
Confidence 3456666666544458888899999987665543 222112 368999999999983333 344444440
Q ss_pred CCCHHHHHhccCCCeEEECCCcchhhHHHHhhccchhhhhccCCCCceEEEeecchh
Q 002515 80 GMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDS 136 (913)
Q Consensus 80 ~~~~~~r~~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs 136 (913)
. . ..++++|...|+...||+..... . - +-+|-|+|+-|.
T Consensus 75 ~---------~-~~~~v~TfHs~~~~~lr~~~~~~----~-~---~~~~~i~d~~d~ 113 (655)
T COG0210 75 A---------A-EGLTVGTFHSFALRILRRHGERL----G-L---NANFTILDSDDQ 113 (655)
T ss_pred c---------c-cCcEEeeHHHHHHHHHHHHHHhc----C-C---CCCCEEecHHHH
Confidence 0 0 01889999999999999766432 1 1 456677777664
No 264
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=55.06 E-value=12 Score=40.83 Aligned_cols=27 Identities=37% Similarity=0.283 Sum_probs=24.0
Q ss_pred cCCCchHHHHHHHHHHHHHcCCcEEEE
Q 002515 23 KTGEGKTLVSTLAAYLNALTGEGVHVV 49 (913)
Q Consensus 23 ~TGEGKTLva~lpa~l~AL~G~~VhVv 49 (913)
|-|.|||.+++-.|+..|..|++|.||
T Consensus 9 KGGVGKTT~a~nLA~~La~~G~rVLli 35 (279)
T PRK13230 9 KGGIGKSTTVCNIAAALAESGKKVLVV 35 (279)
T ss_pred CCCCcHHHHHHHHHHHHHhCCCEEEEE
Confidence 779999998888777789999999998
No 265
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=54.75 E-value=17 Score=34.11 Aligned_cols=36 Identities=25% Similarity=0.192 Sum_probs=25.4
Q ss_pred eEEecCCCchHHHHHHHHHHHHHc-CCcEEEEecCHH
Q 002515 19 IAEMKTGEGKTLVSTLAAYLNALT-GEGVHVVTVNDY 54 (913)
Q Consensus 19 IaEm~TGEGKTLva~lpa~l~AL~-G~~VhVvT~Ndy 54 (913)
++..|-|.|||.++.-.+...+.. |+.|+++=.+..
T Consensus 4 ~~~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d~~ 40 (106)
T cd03111 4 FIGAKGGVGATTLAANLAVALAKEAGRRVLLVDLDLQ 40 (106)
T ss_pred EECCCCCCcHHHHHHHHHHHHHhcCCCcEEEEECCCC
Confidence 456788999998655444445666 999999955444
No 266
>PHA02518 ParA-like protein; Provisional
Probab=54.12 E-value=16 Score=37.65 Aligned_cols=33 Identities=33% Similarity=0.331 Sum_probs=25.2
Q ss_pred EEecCCCchHHHHHHHHHHHHHcCCcEEEEecC
Q 002515 20 AEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVN 52 (913)
Q Consensus 20 aEm~TGEGKTLva~lpa~l~AL~G~~VhVvT~N 52 (913)
+--|=|.|||.+++..|+..|..|++|.+|--.
T Consensus 6 ~~~KGGvGKTT~a~~la~~la~~g~~vlliD~D 38 (211)
T PHA02518 6 LNQKGGAGKTTVATNLASWLHADGHKVLLVDLD 38 (211)
T ss_pred EcCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 445679999987666666678889999988654
No 267
>PRK13705 plasmid-partitioning protein SopA; Provisional
Probab=53.90 E-value=14 Score=43.04 Aligned_cols=32 Identities=41% Similarity=0.238 Sum_probs=26.7
Q ss_pred eEEecCCCchHHHHHHHHHHHHHcCCcEEEEe
Q 002515 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVT 50 (913)
Q Consensus 19 IaEm~TGEGKTLva~lpa~l~AL~G~~VhVvT 50 (913)
|+-.|=|.|||.+++-.|+..|..|++|.||=
T Consensus 111 i~n~KGGVGKTT~a~nLA~~LA~~G~rVLlID 142 (388)
T PRK13705 111 VAAHKGGVYKTSVSVHLAQDLALKGLRVLLVE 142 (388)
T ss_pred EECCCCCchHHHHHHHHHHHHHhcCCCeEEEc
Confidence 66778999999877777777799999999883
No 268
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=53.04 E-value=16 Score=41.14 Aligned_cols=32 Identities=31% Similarity=0.310 Sum_probs=25.4
Q ss_pred cCCCchHHHHHHHHHHHHHcCCcEEEEecCHH
Q 002515 23 KTGEGKTLVSTLAAYLNALTGEGVHVVTVNDY 54 (913)
Q Consensus 23 ~TGEGKTLva~lpa~l~AL~G~~VhVvT~Ndy 54 (913)
|-|-|||.+++..|+..|-.|++|.||+....
T Consensus 9 KGGVGKTT~aaA~A~~~A~~G~rtLlvS~Dpa 40 (305)
T PF02374_consen 9 KGGVGKTTVAAALALALARRGKRTLLVSTDPA 40 (305)
T ss_dssp STTSSHHHHHHHHHHHHHHTTS-EEEEESSTT
T ss_pred CCCCCcHHHHHHHHHHHhhCCCCeeEeecCCC
Confidence 57999998777777667889999999988653
No 269
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=52.64 E-value=15 Score=42.70 Aligned_cols=32 Identities=28% Similarity=0.233 Sum_probs=26.7
Q ss_pred eEEecCCCchHHHHHHHHHHHHHcCCcEEEEe
Q 002515 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVT 50 (913)
Q Consensus 19 IaEm~TGEGKTLva~lpa~l~AL~G~~VhVvT 50 (913)
|+--|=|.|||.+++-.|+..|+.|++|.||=
T Consensus 111 v~n~KGGVGKTTta~nLA~~LA~~G~rVLlID 142 (387)
T PHA02519 111 VMSHKGGVYKTSSAVHTAQWLALQGHRVLLIE 142 (387)
T ss_pred EecCCCCCcHHHHHHHHHHHHHhCCCcEEEEe
Confidence 56778999999877777777899999998884
No 270
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=52.53 E-value=16 Score=39.78 Aligned_cols=34 Identities=24% Similarity=0.375 Sum_probs=27.2
Q ss_pred eEEecCCCchHHHHHHHHHHHHHcCCcEEEEecC
Q 002515 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVN 52 (913)
Q Consensus 19 IaEm~TGEGKTLva~lpa~l~AL~G~~VhVvT~N 52 (913)
|.-.+-|+|||.+++-.|...|..|++|.+|=.+
T Consensus 108 vts~~~g~Gktt~a~nLA~~la~~g~~VllID~D 141 (274)
T TIGR03029 108 VVSAKSGEGCSYIAANLAIVFSQLGEKTLLIDAN 141 (274)
T ss_pred EECCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCC
Confidence 4555689999998777777678899999998663
No 271
>PRK05973 replicative DNA helicase; Provisional
Probab=52.23 E-value=21 Score=38.83 Aligned_cols=42 Identities=21% Similarity=0.272 Sum_probs=32.2
Q ss_pred HHHHHHHhcCC--eEEecCCCchHHHHHHHHHHHHHcCCcEEEEec
Q 002515 8 IIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTV 51 (913)
Q Consensus 8 l~g~l~L~~G~--IaEm~TGEGKTLva~lpa~l~AL~G~~VhVvT~ 51 (913)
+.||+ ..|. ++--.+|.|||+.++--++-.|..|++|..+|.
T Consensus 57 l~GGl--~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSl 100 (237)
T PRK05973 57 LFSQL--KPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTL 100 (237)
T ss_pred hcCCC--CCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEE
Confidence 44544 4676 677789999999888777756688999988875
No 272
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=52.00 E-value=40 Score=42.74 Aligned_cols=77 Identities=17% Similarity=0.148 Sum_probs=47.9
Q ss_pred cCCCchHHHHHHHHHHHH-HcC-CcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHH----HhccCCC-eE
Q 002515 23 KTGEGKTLVSTLAAYLNA-LTG-EGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEER----RSNYRCD-IT 95 (913)
Q Consensus 23 ~TGEGKTLva~lpa~l~A-L~G-~~VhVvT~NdyLA~RDae~~~~~y~~LGLsv~~i~~~~~~~~r----~~aY~~D-I~ 95 (913)
.||.|||.++...+.... ..| +.|.++|.-.|=+. -.+.+.-+.+.+|+.+-.+. ++.+- +..-++| |+
T Consensus 193 pnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~Rig-A~eQL~~~a~~~gvpv~~~~---~~~~l~~al~~~~~~D~VL 268 (767)
T PRK14723 193 PTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIG-ALEQLRIYGRILGVPVHAVK---DAADLRFALAALGDKHLVL 268 (767)
T ss_pred CCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchH-HHHHHHHHHHhCCCCccccC---CHHHHHHHHHHhcCCCEEE
Confidence 699999887666665443 456 58999998765311 25677778888999876543 22221 1122346 45
Q ss_pred EECCCcch
Q 002515 96 YTNNSELG 103 (913)
Q Consensus 96 YgT~~e~~ 103 (913)
.=|++...
T Consensus 269 IDTAGRs~ 276 (767)
T PRK14723 269 IDTVGMSQ 276 (767)
T ss_pred EeCCCCCc
Confidence 55777554
No 273
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=51.96 E-value=20 Score=42.83 Aligned_cols=101 Identities=26% Similarity=0.298 Sum_probs=51.4
Q ss_pred hcCC--eEEecCCCchHHH-HHHHHHHHHHcC-CcEEEEecC----HHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHH
Q 002515 15 HDGS--IAEMKTGEGKTLV-STLAAYLNALTG-EGVHVVTVN----DYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEER 86 (913)
Q Consensus 15 ~~G~--IaEm~TGEGKTLv-a~lpa~l~AL~G-~~VhVvT~N----dyLA~RDae~~~~~y~~LGLsv~~i~~~~~~~~r 86 (913)
++++ |.-=.||+|||.- =-..+. ..+.- .+|-+--|- -.+|+|-+++|-- -||=.||....- +
T Consensus 60 ~~nQ~~v~vGetgsGKttQiPq~~~~-~~~~~~~~v~CTQprrvaamsva~RVadEMDv---~lG~EVGysIrf----E- 130 (699)
T KOG0925|consen 60 LNNQIIVLVGETGSGKTTQIPQFVLE-YELSHLTGVACTQPRRVAAMSVAQRVADEMDV---TLGEEVGYSIRF----E- 130 (699)
T ss_pred hcCceEEEEecCCCCccccCcHHHHH-HHHhhccceeecCchHHHHHHHHHHHHHHhcc---ccchhccccccc----c-
Confidence 3444 4555799999963 222221 12221 344433333 3688999999862 344444432210 0
Q ss_pred HhccCCCeEEECCCcchhhHHHHhhccc--hhhhhccCCCCceEEEeecchh
Q 002515 87 RSNYRCDITYTNNSELGFDYLRDNLAAN--SEQLVMRWPKPFHFAIVDEVDS 136 (913)
Q Consensus 87 ~~aY~~DI~YgT~~e~~fDyLrD~l~~~--~~~~v~r~~R~~~~aIVDEvDs 136 (913)
+ .+||..+ +-|..|.|-.+ .++..+. ...++|+||||-
T Consensus 131 ----d----C~~~~T~-Lky~tDgmLlrEams~p~l~---~y~viiLDeahE 170 (699)
T KOG0925|consen 131 ----D----CTSPNTL-LKYCTDGMLLREAMSDPLLG---RYGVIILDEAHE 170 (699)
T ss_pred ----c----cCChhHH-HHHhcchHHHHHHhhCcccc---cccEEEechhhh
Confidence 0 0223222 45555554332 1123444 789999999984
No 274
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=51.75 E-value=18 Score=40.84 Aligned_cols=14 Identities=21% Similarity=0.418 Sum_probs=11.8
Q ss_pred CceEEEeecchhhh
Q 002515 125 PFHFAIVDEVDSVL 138 (913)
Q Consensus 125 ~~~~aIVDEvDsiL 138 (913)
+.-++||||+|.++
T Consensus 129 ~~~vlvIDE~d~L~ 142 (365)
T TIGR02928 129 DSLIIVLDEIDYLV 142 (365)
T ss_pred CeEEEEECchhhhc
Confidence 45689999999986
No 275
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=51.51 E-value=27 Score=45.56 Aligned_cols=97 Identities=21% Similarity=0.349 Sum_probs=0.0
Q ss_pred CCchHH-HHHHHHHHHHHcCC--cEEEEecCHHHHHHHHHHHHHHhhhc-CCeEEEEcCCCC-HHHHHhccCC----CeE
Q 002515 25 GEGKTL-VSTLAAYLNALTGE--GVHVVTVNDYLAQRDAEWMERVHRFL-GLSVGLIQRGMI-PEERRSNYRC----DIT 95 (913)
Q Consensus 25 GEGKTL-va~lpa~l~AL~G~--~VhVvT~NdyLA~RDae~~~~~y~~L-GLsv~~i~~~~~-~~~r~~aY~~----DI~ 95 (913)
|=|||+ +..|.|+|.+-.|. .=.||.++..+-. |=-.|-+|. |+++-..+|... ..+||+-+.. +|.
T Consensus 644 GLGKTIQtISllAhLACeegnWGPHLIVVpTsviLn----WEMElKRwcPglKILTYyGs~kErkeKRqgW~kPnaFHVC 719 (1958)
T KOG0391|consen 644 GLGKTIQTISLLAHLACEEGNWGPHLIVVPTSVILN----WEMELKRWCPGLKILTYYGSHKERKEKRQGWAKPNAFHVC 719 (1958)
T ss_pred cccchhHHHHHHHHHHhcccCCCCceEEeechhhhh----hhHHHhhhCCcceEeeecCCHHHHHHHhhcccCCCeeEEe
Q ss_pred EECCCcchhhHHHHhhccchhhhhccCCCCceEEEeecchhh
Q 002515 96 YTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV 137 (913)
Q Consensus 96 YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsi 137 (913)
.+.-.-+ ++|.-+.. .+ .-.|+|+||++.|
T Consensus 720 ItSYklv----~qd~~AFk-----rk---rWqyLvLDEaqnI 749 (1958)
T KOG0391|consen 720 ITSYKLV----FQDLTAFK-----RK---RWQYLVLDEAQNI 749 (1958)
T ss_pred ehhhHHH----HhHHHHHH-----hh---ccceeehhhhhhh
No 276
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=51.49 E-value=18 Score=38.84 Aligned_cols=28 Identities=29% Similarity=0.254 Sum_probs=22.9
Q ss_pred cCCCchHHHHHHHHHHHHHcCCcEEEEe
Q 002515 23 KTGEGKTLVSTLAAYLNALTGEGVHVVT 50 (913)
Q Consensus 23 ~TGEGKTLva~lpa~l~AL~G~~VhVvT 50 (913)
|=|.|||-+++-.|+..|..|++|.+|=
T Consensus 9 KGGvGKTT~~~nLA~~La~~G~kVlliD 36 (270)
T cd02040 9 KGGIGKSTTTQNLSAALAEMGKKVMIVG 36 (270)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 7799999877766666788999999883
No 277
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=51.38 E-value=20 Score=35.68 Aligned_cols=30 Identities=27% Similarity=0.180 Sum_probs=23.8
Q ss_pred EEecCCCchHHHHHHHHHHHHHcCCcEEEE
Q 002515 20 AEMKTGEGKTLVSTLAAYLNALTGEGVHVV 49 (913)
Q Consensus 20 aEm~TGEGKTLva~lpa~l~AL~G~~VhVv 49 (913)
+--+=|.|||.+++-.++..+..|+.|.+|
T Consensus 5 ~~~kgG~GKtt~a~~la~~l~~~g~~vllv 34 (179)
T cd02036 5 TSGKGGVGKTTTTANLGTALAQLGYKVVLI 34 (179)
T ss_pred eeCCCCCCHHHHHHHHHHHHHhCCCeEEEE
Confidence 445679999987766666678889999888
No 278
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=50.99 E-value=16 Score=39.67 Aligned_cols=31 Identities=35% Similarity=0.380 Sum_probs=25.5
Q ss_pred cCCCchHHHHHHHHHHHHHcCCcEEEEecCH
Q 002515 23 KTGEGKTLVSTLAAYLNALTGEGVHVVTVND 53 (913)
Q Consensus 23 ~TGEGKTLva~lpa~l~AL~G~~VhVvT~Nd 53 (913)
+-|+|||.+++-.+...|-.|++|.+|....
T Consensus 8 kgG~GKtt~a~~la~~~a~~g~~vLlvd~D~ 38 (254)
T cd00550 8 KGGVGKTTISAATAVRLAEQGKKVLLVSTDP 38 (254)
T ss_pred CCCchHHHHHHHHHHHHHHCCCCceEEeCCC
Confidence 6799999877666666788999999998754
No 279
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=50.86 E-value=18 Score=39.43 Aligned_cols=30 Identities=20% Similarity=0.168 Sum_probs=25.1
Q ss_pred ecCCCchHHHHHHHHHHHHHcCCcEEEEec
Q 002515 22 MKTGEGKTLVSTLAAYLNALTGEGVHVVTV 51 (913)
Q Consensus 22 m~TGEGKTLva~lpa~l~AL~G~~VhVvT~ 51 (913)
=|-|.|||.+++-.|+..|-.|++|.||=-
T Consensus 8 gKGGVGKTT~a~nLA~~La~~G~rVllvD~ 37 (273)
T PRK13232 8 GKGGIGKSTTTQNLTAALSTMGNKILLVGC 37 (273)
T ss_pred CCCCCcHHHHHHHHHHHHHhhCCCeEEEec
Confidence 478999999888777778889999999843
No 280
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=50.59 E-value=23 Score=40.50 Aligned_cols=59 Identities=32% Similarity=0.291 Sum_probs=37.7
Q ss_pred eEEecCCCchHHHHHHHHHHHH----HcCCcE----EEEecCHHHHHHHH-HHHHHHhhhcCCeEEEE
Q 002515 19 IAEMKTGEGKTLVSTLAAYLNA----LTGEGV----HVVTVNDYLAQRDA-EWMERVHRFLGLSVGLI 77 (913)
Q Consensus 19 IaEm~TGEGKTLva~lpa~l~A----L~G~~V----hVvT~NdyLA~RDa-e~~~~~y~~LGLsv~~i 77 (913)
|+--..|-|||+.++-.++..| |.|..| -|+.+|-+|-+-|. +.+.+++..+||+.+-+
T Consensus 93 ~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvslEl~re~~L~Rl~~v~a~mgLsPadv 160 (402)
T COG3598 93 ILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLELYREDILERLEPVRARMGLSPADV 160 (402)
T ss_pred EEecCCcccHhHHHHHHHHHHHhhHHHhcccccCCCeEEEEEeccChHHHHHHHHHHHHHcCCChHhh
Confidence 4556789999987655544333 456211 34555555555554 45899999999997743
No 281
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=50.45 E-value=57 Score=33.42 Aligned_cols=61 Identities=20% Similarity=0.220 Sum_probs=40.2
Q ss_pred hhHHHHHHHHhcC---CeEEecCCCchHH-HHHHHHHH-------HHHcCCcEEEEecCHHHHHHHHHHHHH
Q 002515 5 DVQIIGGAVLHDG---SIAEMKTGEGKTL-VSTLAAYL-------NALTGEGVHVVTVNDYLAQRDAEWMER 65 (913)
Q Consensus 5 dvQl~g~l~L~~G---~IaEm~TGEGKTL-va~lpa~l-------~AL~G~~VhVvT~NdyLA~RDae~~~~ 65 (913)
+-|..+...++.. .+++=.-|.|||- ++.+.+.+ ....++.|.|+++|..-...-.+.+..
T Consensus 4 ~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 4 ESQREAIQSALSSNGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 3577777755543 4677788999994 34444443 256678999999998877766666655
No 282
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=50.45 E-value=15 Score=46.97 Aligned_cols=14 Identities=29% Similarity=0.589 Sum_probs=12.2
Q ss_pred CceEEEeecchhhh
Q 002515 125 PFHFAIVDEVDSVL 138 (913)
Q Consensus 125 ~~~~aIVDEvDsiL 138 (913)
...++||||+|.+.
T Consensus 869 ~v~IIILDEID~L~ 882 (1164)
T PTZ00112 869 NVSILIIDEIDYLI 882 (1164)
T ss_pred cceEEEeehHhhhC
Confidence 67799999999875
No 283
>PRK08760 replicative DNA helicase; Provisional
Probab=49.80 E-value=67 Score=38.51 Aligned_cols=112 Identities=16% Similarity=0.127 Sum_probs=61.4
Q ss_pred HhcCC--eEEecCCCchHHHHHHHHHHHHHc-CCcEEEEec---CHHHHHHHHHHHHHHhhhcCCeEEEE-cCCCCHHHH
Q 002515 14 LHDGS--IAEMKTGEGKTLVSTLAAYLNALT-GEGVHVVTV---NDYLAQRDAEWMERVHRFLGLSVGLI-QRGMIPEER 86 (913)
Q Consensus 14 L~~G~--IaEm~TGEGKTLva~lpa~l~AL~-G~~VhVvT~---NdyLA~RDae~~~~~y~~LGLsv~~i-~~~~~~~~r 86 (913)
+..|. |+-..||-|||..++--|.-.|.. |++|.+++. .+.|+.|-.... -+++...+ .+.++.++.
T Consensus 226 ~~~G~LivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlEMs~~ql~~Rl~a~~------s~i~~~~i~~g~l~~~e~ 299 (476)
T PRK08760 226 LQPTDLIILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSMEMSASQLAMRLISSN------GRINAQRLRTGALEDEDW 299 (476)
T ss_pred CCCCceEEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEeccCCHHHHHHHHHHhh------CCCcHHHHhcCCCCHHHH
Confidence 45676 677889999998766665534554 888988764 224444432221 12222211 223444432
Q ss_pred H-------hccCCCeEEECCCcchhhHHHHhhccchhhhhccCCCCceEEEeecchhh
Q 002515 87 R-------SNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV 137 (913)
Q Consensus 87 ~-------~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsi 137 (913)
. ...+..+..-....+..+.++..+..- .... +++++|||=..-|
T Consensus 300 ~~~~~a~~~l~~~~l~I~d~~~~t~~~I~~~~r~l---~~~~---~~~lVvIDyLql~ 351 (476)
T PRK08760 300 ARVTGAIKMLKETKIFIDDTPGVSPEVLRSKCRRL---KREH---DLGLIVIDYLQLM 351 (476)
T ss_pred HHHHHHHHHHhcCCEEEeCCCCCCHHHHHHHHHHH---HHhc---CCCEEEEecHHhc
Confidence 2 112345554555557777777665321 1122 6889999977643
No 284
>COG1192 Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=49.78 E-value=20 Score=38.47 Aligned_cols=32 Identities=31% Similarity=0.296 Sum_probs=25.8
Q ss_pred eEEecCCCchHHHHHHHHHHHH-HcCCcEEEEe
Q 002515 19 IAEMKTGEGKTLVSTLAAYLNA-LTGEGVHVVT 50 (913)
Q Consensus 19 IaEm~TGEGKTLva~lpa~l~A-L~G~~VhVvT 50 (913)
|+..|=|.|||.+++-.|+..| ..|++|.+|=
T Consensus 7 v~n~KGGvGKTT~a~nLa~~La~~~~~kVLliD 39 (259)
T COG1192 7 VANQKGGVGKTTTAVNLAAALAKRGGKKVLLID 39 (259)
T ss_pred EEecCCCccHHHHHHHHHHHHHHhcCCcEEEEe
Confidence 5677889999988887777778 6668998873
No 285
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=49.34 E-value=1.1e+02 Score=34.90 Aligned_cols=57 Identities=14% Similarity=0.090 Sum_probs=35.5
Q ss_pred CeEEECCC----cchhhHHHHhhccchhhhhccCCCCceEEEeecchhhhhccCCCceeccCCCCCCccchHHHHHHHHH
Q 002515 93 DITYTNNS----ELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAEL 168 (913)
Q Consensus 93 DI~YgT~~----e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~tPLiiSg~~~~~~~~y~~~~~~v~~ 168 (913)
|+.+.++. ..+.|-.|+-...-....... +..++|||+||.|= -..++.+.+.
T Consensus 75 D~~~i~p~~~~~~I~idqiR~l~~~~~~~~~~g---~~kV~iI~~ae~m~--------------------~~AaNaLLKt 131 (334)
T PRK07993 75 DYYTLTPEKGKSSLGVDAVREVTEKLYEHARLG---GAKVVWLPDAALLT--------------------DAAANALLKT 131 (334)
T ss_pred CEEEEecccccccCCHHHHHHHHHHHhhccccC---CceEEEEcchHhhC--------------------HHHHHHHHHH
Confidence 66666543 366777776432110011223 78899999999984 1367888889
Q ss_pred hccC
Q 002515 169 LVQG 172 (913)
Q Consensus 169 l~~~ 172 (913)
|+++
T Consensus 132 LEEP 135 (334)
T PRK07993 132 LEEP 135 (334)
T ss_pred hcCC
Confidence 9875
No 286
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=48.89 E-value=22 Score=35.55 Aligned_cols=31 Identities=29% Similarity=0.247 Sum_probs=23.1
Q ss_pred eEEecCCCchHHHHHHHHHHHHHcCCcEEEE
Q 002515 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVV 49 (913)
Q Consensus 19 IaEm~TGEGKTLva~lpa~l~AL~G~~VhVv 49 (913)
|.=..||+|||.+++-.+...+-.|++|.++
T Consensus 2 I~~t~~~~GKT~va~~L~~~l~~~g~~V~~~ 32 (166)
T TIGR00347 2 VTGTDTGVGKTVASSALAAKLKKAGYSVGYY 32 (166)
T ss_pred eecCCCCccHHHHHHHHHHHHHHCCCcEEEE
Confidence 3446799999987666665567788888875
No 287
>PRK10818 cell division inhibitor MinD; Provisional
Probab=48.56 E-value=22 Score=38.52 Aligned_cols=34 Identities=29% Similarity=0.252 Sum_probs=26.9
Q ss_pred eEEecCCCchHHHHHHHHHHHHHcCCcEEEEecC
Q 002515 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVN 52 (913)
Q Consensus 19 IaEm~TGEGKTLva~lpa~l~AL~G~~VhVvT~N 52 (913)
|+--+-|.|||.+++-.|+..|..|+.|.+|=-.
T Consensus 7 v~s~KGGvGKTt~a~nlA~~la~~g~~vllvD~D 40 (270)
T PRK10818 7 VTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFD 40 (270)
T ss_pred EEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 4556789999998888887778889888877554
No 288
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=48.33 E-value=21 Score=39.79 Aligned_cols=30 Identities=23% Similarity=0.171 Sum_probs=24.7
Q ss_pred ecCCCchHHHHHHHHHHHHHcCCcEEEEec
Q 002515 22 MKTGEGKTLVSTLAAYLNALTGEGVHVVTV 51 (913)
Q Consensus 22 m~TGEGKTLva~lpa~l~AL~G~~VhVvT~ 51 (913)
.|-|.|||.+++-.++..|..|++|.||=.
T Consensus 11 ~KGGvGKTt~~~nLa~~la~~g~kVLliD~ 40 (295)
T PRK13234 11 GKGGIGKSTTSQNTLAALVEMGQKILIVGC 40 (295)
T ss_pred CCCCccHHHHHHHHHHHHHHCCCeEEEEec
Confidence 688999998777766668889999999843
No 289
>PRK13236 nitrogenase reductase; Reviewed
Probab=48.30 E-value=19 Score=40.13 Aligned_cols=30 Identities=27% Similarity=0.269 Sum_probs=25.1
Q ss_pred cCCCchHHHHHHHHHHHHHcCCcEEEEecC
Q 002515 23 KTGEGKTLVSTLAAYLNALTGEGVHVVTVN 52 (913)
Q Consensus 23 ~TGEGKTLva~lpa~l~AL~G~~VhVvT~N 52 (913)
|-|-|||.+++-.|+..|..|++|.||=-.
T Consensus 14 KGGVGKTt~a~NLA~~La~~G~rVLliD~D 43 (296)
T PRK13236 14 KGGIGKSTTSQNTLAAMAEMGQRILIVGCD 43 (296)
T ss_pred CCcCCHHHHHHHHHHHHHHCCCcEEEEEcc
Confidence 679999998888777788899999998443
No 290
>PRK14719 bifunctional RNAse/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional
Probab=47.93 E-value=61 Score=37.51 Aligned_cols=74 Identities=19% Similarity=0.155 Sum_probs=51.6
Q ss_pred hHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEeccCCcchhhHHHHHHhcCCCccEEEEc--CCC
Q 002515 336 RGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQAGRKYAITIST--NMA 413 (913)
Q Consensus 336 ~~k~~aii~ei~~~~~~grPVLI~t~Si~~SE~ls~~L~~~gi~~~vLnA~~k~~~~Ea~Iia~AG~~G~VTIAT--nmA 413 (913)
-+|+..+++++++..+.|.||||=-.... ..|++.||+.+++....+--..=++-+.+||- ..|.|+| |-+
T Consensus 7 ~~~~~~~~~~l~~~~~~~~~ilveg~~d~------~~l~~lgi~g~~i~~s~~p~~~cad~ii~~gi-~rVVi~~D~d~~ 79 (360)
T PRK14719 7 LEKLLLIIDDLKLLAEKGIPILVEGPNDI------LSLKNLKINANFITVSNTPVFQIADDLIAENI-SEVILLTDFDRA 79 (360)
T ss_pred HHHHHHHHHHHHHhhhCCCEEEEEcchHH------HHHHHcCCCCcEEEEeCCchHHHHHHHHHcCC-CEEEEEECCCCC
Confidence 35778889999988888999999766554 34788899866655421111223455667884 4899999 468
Q ss_pred CCC
Q 002515 414 GRG 416 (913)
Q Consensus 414 GRG 416 (913)
|||
T Consensus 80 G~~ 82 (360)
T PRK14719 80 GRV 82 (360)
T ss_pred CCc
Confidence 888
No 291
>PRK05580 primosome assembly protein PriA; Validated
Probab=47.72 E-value=70 Score=40.06 Aligned_cols=76 Identities=22% Similarity=0.264 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHC-CCCeEEeccCCcchhhHHHHH-HhcCCCccEEEEcCCC
Q 002515 337 GKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQ-GIPHNVLNARPKYAAREAETV-AQAGRKYAITISTNMA 413 (913)
Q Consensus 337 ~k~~aii~ei~~~~~~grPVLI~t~Si~~SE~ls~~L~~~-gi~~~vLnA~~k~~~~Ea~Ii-a~AG~~G~VTIATnmA 413 (913)
.|....+.-+......|+.|||.+++++.+..+.+.|++. |+...+++++....++..... ...| ...|.|+|..|
T Consensus 174 GKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g-~~~IVVgTrsa 251 (679)
T PRK05580 174 GKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRG-EAKVVIGARSA 251 (679)
T ss_pred hHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcC-CCCEEEeccHH
Confidence 3444434444455567899999999999999999999774 788888998632222222222 2345 34788999644
No 292
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=47.67 E-value=19 Score=39.28 Aligned_cols=28 Identities=32% Similarity=0.274 Sum_probs=23.3
Q ss_pred cCCCchHHHHHHHHHHHHHcCCcEEEEe
Q 002515 23 KTGEGKTLVSTLAAYLNALTGEGVHVVT 50 (913)
Q Consensus 23 ~TGEGKTLva~lpa~l~AL~G~~VhVvT 50 (913)
|=|.|||.+++-.|+..|..|++|.||=
T Consensus 8 KGGVGKTT~a~nLA~~La~~G~~VlliD 35 (275)
T TIGR01287 8 KGGIGKSTTTQNIAAALAEMGKKVMIVG 35 (275)
T ss_pred CCcCcHHHHHHHHHHHHHHCCCeEEEEe
Confidence 6699999987777777888999998873
No 293
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=47.36 E-value=38 Score=40.84 Aligned_cols=26 Identities=27% Similarity=0.372 Sum_probs=16.7
Q ss_pred eEEecCCCchHHHHH-HHHHHHHHcCC
Q 002515 19 IAEMKTGEGKTLVST-LAAYLNALTGE 44 (913)
Q Consensus 19 IaEm~TGEGKTLva~-lpa~l~AL~G~ 44 (913)
|..=.-|.|||.+|- ++-.+++..|.
T Consensus 39 Lf~Gp~G~GKTT~ArilAk~LnC~~~~ 65 (491)
T PRK14964 39 LLVGASGVGKTTCARIISLCLNCSNGP 65 (491)
T ss_pred EEECCCCccHHHHHHHHHHHHcCcCCC
Confidence 455568999997654 44456665554
No 294
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=47.29 E-value=61 Score=40.08 Aligned_cols=105 Identities=26% Similarity=0.269 Sum_probs=65.4
Q ss_pred hhHHHHHHHHhcCC-eEEecCCCchHHHHHHHHH-HHHHcC---CcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcC
Q 002515 5 DVQIIGGAVLHDGS-IAEMKTGEGKTLVSTLAAY-LNALTG---EGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQR 79 (913)
Q Consensus 5 dvQl~g~l~L~~G~-IaEm~TGEGKTLva~lpa~-l~AL~G---~~VhVvT~NdyLA~RDae~~~~~y~~LGLsv~~i~~ 79 (913)
|-|.-++-. ..|. ++-..-|+|||.+.+--+. +..=.| +.+.+||.++--|..--+. +.+.+|-..
T Consensus 4 ~~Q~~av~~-~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~~p~~IL~vTFt~~Aa~em~~R---l~~~l~~~~----- 74 (664)
T TIGR01074 4 PQQQEAVEY-VTGPCLVLAGAGSGKTRVITNKIAYLIQNCGYKARNIAAVTFTNKAAREMKER---VAKTLGKGE----- 74 (664)
T ss_pred HHHHHHHhC-CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHH---HHHHhCccc-----
Confidence 455544322 3566 7788899999987665553 322123 5689999999888743333 444454210
Q ss_pred CCCHHHHHhccCCCeEEECCCcchhhHHHHhhccchhhhhccCCCCceEEEeecchhh
Q 002515 80 GMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV 137 (913)
Q Consensus 80 ~~~~~~r~~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsi 137 (913)
..+|..+|...|++..|+..... .. - ...|-|+|+.+..
T Consensus 75 -----------~~~v~v~TfHs~a~~il~~~~~~----~g-~---~~~~~il~~~~~~ 113 (664)
T TIGR01074 75 -----------ARGLTISTFHTLGLDIIKREYNA----LG-Y---KSNFSLFDETDQL 113 (664)
T ss_pred -----------cCCeEEEeHHHHHHHHHHHHHHH----hC-C---CCCCEEeCHHHHH
Confidence 13588899999999999875321 00 1 2346688988753
No 295
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=46.67 E-value=23 Score=38.21 Aligned_cols=33 Identities=24% Similarity=0.209 Sum_probs=26.4
Q ss_pred eEEecCCCchHHHHHHHHHHHHHcCCcEEEEec
Q 002515 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTV 51 (913)
Q Consensus 19 IaEm~TGEGKTLva~lpa~l~AL~G~~VhVvT~ 51 (913)
|+.-|=|.|||.+++..|+..|..|+.|.||=.
T Consensus 6 v~n~KGGvGKTT~a~nLA~~la~~G~~VlliD~ 38 (231)
T PRK13849 6 FCSFKGGAGKTTALMGLCAALASDGKRVALFEA 38 (231)
T ss_pred EECCCCCccHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 344567999999888877778899999998844
No 296
>CHL00175 minD septum-site determining protein; Validated
Probab=46.64 E-value=23 Score=38.70 Aligned_cols=31 Identities=29% Similarity=0.235 Sum_probs=24.2
Q ss_pred eEEecCCCchHHHHHHHHHHHHHcCCcEEEE
Q 002515 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVV 49 (913)
Q Consensus 19 IaEm~TGEGKTLva~lpa~l~AL~G~~VhVv 49 (913)
|+--+-|.|||.+++-.|+..|-.|++|.+|
T Consensus 20 v~s~KGGvGKTt~a~nLA~~La~~g~~vlli 50 (281)
T CHL00175 20 ITSGKGGVGKTTTTANLGMSIARLGYRVALI 50 (281)
T ss_pred EEcCCCCCcHHHHHHHHHHHHHhCCCeEEEE
Confidence 4555889999987766666667789888888
No 297
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=46.61 E-value=3.9 Score=42.59 Aligned_cols=55 Identities=24% Similarity=0.185 Sum_probs=23.3
Q ss_pred EEecCCCchHHHHHHHHHHHHHcCC-cEEEEecCHHHHHHHHHHHHHHhhhcCCeE
Q 002515 20 AEMKTGEGKTLVSTLAAYLNALTGE-GVHVVTVNDYLAQRDAEWMERVHRFLGLSV 74 (913)
Q Consensus 20 aEm~TGEGKTLva~lpa~l~AL~G~-~VhVvT~NdyLA~RDae~~~~~y~~LGLsv 74 (913)
.-..=|-|||-+..+.+....-.|+ .|.|..||..=++.-++....-.+.+|++.
T Consensus 2 ltA~RGRGKSa~lGl~~a~l~~~~~~~I~vtAP~~~~~~~lf~~~~~~l~~~~~~~ 57 (177)
T PF05127_consen 2 LTADRGRGKSAALGLAAAALIQKGKIRILVTAPSPENVQTLFEFAEKGLKALGYKE 57 (177)
T ss_dssp EEE-TTSSHHHHHHHCCCCSSS-----EEEE-SS--S-HHHHHCC-----------
T ss_pred ccCCCCCCHHHHHHHHHHHHHHhcCceEEEecCCHHHHHHHHHHHHhhcccccccc
Confidence 3445699999988887763222333 688888888755544444444444444443
No 298
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=46.61 E-value=60 Score=39.16 Aligned_cols=64 Identities=20% Similarity=0.257 Sum_probs=43.8
Q ss_pred HHHHhcCCcEEEEecchhhHHHHHHHHHHC-CCCeEEeccCCcchhhHHHHH-HhcCCCccEEEEcC
Q 002515 347 ESMFRLGRPVLVGSTSVENSEYLSDLLKQQ-GIPHNVLNARPKYAAREAETV-AQAGRKYAITISTN 411 (913)
Q Consensus 347 ~~~~~~grPVLI~t~Si~~SE~ls~~L~~~-gi~~~vLnA~~k~~~~Ea~Ii-a~AG~~G~VTIATn 411 (913)
....+.|+.|||.++++.-+..+.+.|++. |.++.++|+.....++..... ...| ...|.|+|.
T Consensus 19 ~~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g-~~~IVVGTr 84 (505)
T TIGR00595 19 EKVLALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNG-EILVVIGTR 84 (505)
T ss_pred HHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcC-CCCEEECCh
Confidence 334467889999999999999999999764 778889998632222222221 2345 346888885
No 299
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=46.56 E-value=28 Score=41.78 Aligned_cols=64 Identities=17% Similarity=0.293 Sum_probs=48.2
Q ss_pred HHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHHhcc------CCCeEEECC
Q 002515 32 STLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNY------RCDITYTNN 99 (913)
Q Consensus 32 a~lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLsv~~i~~~~~~~~r~~aY------~~DI~YgT~ 99 (913)
|++++++.-+.-..+.|.+-+. .+|..|.=++.+|||++|-+.|+++.++|-.+. .+||..+|-
T Consensus 415 a~l~~l~~rtf~~~~ivFv~tK----k~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTD 484 (691)
T KOG0338|consen 415 AMLASLITRTFQDRTIVFVRTK----KQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATD 484 (691)
T ss_pred HHHHHHHHHhcccceEEEEehH----HHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhccCCEEEEec
Confidence 4455555556667787877765 455679999999999999999999988886543 467777773
No 300
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=46.27 E-value=33 Score=42.77 Aligned_cols=13 Identities=31% Similarity=0.583 Sum_probs=11.8
Q ss_pred CceEEEeecchhh
Q 002515 125 PFHFAIVDEVDSV 137 (913)
Q Consensus 125 ~~~~aIVDEvDsi 137 (913)
++.++||||||.|
T Consensus 124 r~KViIIDEah~L 136 (700)
T PRK12323 124 RFKVYMIDEVHML 136 (700)
T ss_pred CceEEEEEChHhc
Confidence 6889999999987
No 301
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=46.15 E-value=25 Score=36.31 Aligned_cols=37 Identities=30% Similarity=0.273 Sum_probs=23.6
Q ss_pred eEEecCCCchHHHHHHHHHHHHHcCCcEEEEecCHHH
Q 002515 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYL 55 (913)
Q Consensus 19 IaEm~TGEGKTLva~lpa~l~AL~G~~VhVvT~NdyL 55 (913)
+..=.||.|||-.|...+.-..-.|..|-.++..+-+
T Consensus 51 ~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~ 87 (178)
T PF01695_consen 51 ILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLL 87 (178)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHH
T ss_pred EEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCcee
Confidence 7777899999975554443223378888888875533
No 302
>TIGR00609 recB exodeoxyribonuclease V, beta subunit. All proteins in this family for which functions are known are DNA-DNA helicases that are used as part of an exonuclease-helicase complex (made up of RecBCD homologs) that function to generate substrates for the initiation of recombination and recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=45.68 E-value=44 Score=44.09 Aligned_cols=55 Identities=29% Similarity=0.356 Sum_probs=40.5
Q ss_pred cCC-eEEecCCCchHHHHHHHHHHHHHcC-----CcEEEEecCH----HHHHHHHHHHHHHhhhc
Q 002515 16 DGS-IAEMKTGEGKTLVSTLAAYLNALTG-----EGVHVVTVND----YLAQRDAEWMERVHRFL 70 (913)
Q Consensus 16 ~G~-IaEm~TGEGKTLva~lpa~l~AL~G-----~~VhVvT~Nd----yLA~RDae~~~~~y~~L 70 (913)
+|. ++|..-|+|||-+.+....-.-|.| ..+.|||.|+ +|..|..+.+...+..+
T Consensus 9 ~G~~lieAsAGtGKT~ti~~~~lrll~~~~~~~~~~iLvvTFT~aAt~el~~RIr~rL~~~~~~~ 73 (1087)
T TIGR00609 9 NGTFLIEASAGTGKTFTIAQLYLRLLLEGGPLTVEEILVVTFTNAATEELKTRIRGRIHQALRAL 73 (1087)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHhcCCCCChhhEEEEehhHHHHHHHHHHHHHHHHHHHHHH
Confidence 454 9999999999987555443223333 4689999886 78889998888777655
No 303
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=45.62 E-value=17 Score=42.20 Aligned_cols=70 Identities=24% Similarity=0.294 Sum_probs=37.6
Q ss_pred CCchhHHHHHH-HHhcCC--eEE--ecCCCchHHHHHHHHHHHHHcCC--cEEEEecCHHHHHHH------------HHH
Q 002515 2 RHFDVQIIGGA-VLHDGS--IAE--MKTGEGKTLVSTLAAYLNALTGE--GVHVVTVNDYLAQRD------------AEW 62 (913)
Q Consensus 2 rp~dvQl~g~l-~L~~G~--IaE--m~TGEGKTLva~lpa~l~AL~G~--~VhVvT~NdyLA~RD------------ae~ 62 (913)
+|-.++--.++ +|++-. ++- =+-|+|||+-|+.++....+.-+ .=.|||-+-+=--+| --|
T Consensus 227 ~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~eEeKm~PW 306 (436)
T COG1875 227 RPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTEEEKMGPW 306 (436)
T ss_pred CcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCchhhhccch
Confidence 55666555555 444433 222 25799999988777765555443 223444332211122 238
Q ss_pred HHHHhhhcC
Q 002515 63 MERVHRFLG 71 (913)
Q Consensus 63 ~~~~y~~LG 71 (913)
|+|+|+-|-
T Consensus 307 mq~i~DnLE 315 (436)
T COG1875 307 MQAIFDNLE 315 (436)
T ss_pred HHHHHhHHH
Confidence 888887553
No 304
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=45.58 E-value=22 Score=40.61 Aligned_cols=30 Identities=27% Similarity=0.362 Sum_probs=24.8
Q ss_pred ecCCCchHHHHHHHHHHHHHcCCcEEEEec
Q 002515 22 MKTGEGKTLVSTLAAYLNALTGEGVHVVTV 51 (913)
Q Consensus 22 m~TGEGKTLva~lpa~l~AL~G~~VhVvT~ 51 (913)
-+-|+|||.+++-.++..|..|++|.+|-.
T Consensus 38 gkgG~GKSt~a~nLa~~la~~g~rVllid~ 67 (329)
T cd02033 38 GKGGIGKSFTLANLSYMMAQQGKRVLLIGC 67 (329)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCcEEEEEe
Confidence 478999999877777777888999998854
No 305
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=45.42 E-value=22 Score=39.56 Aligned_cols=29 Identities=28% Similarity=0.218 Sum_probs=24.2
Q ss_pred cCCCchHHHHHHHHHHHHHcCCcEEEEec
Q 002515 23 KTGEGKTLVSTLAAYLNALTGEGVHVVTV 51 (913)
Q Consensus 23 ~TGEGKTLva~lpa~l~AL~G~~VhVvT~ 51 (913)
|=|.|||.+++-.|+..|-.|++|.||=-
T Consensus 8 KGGVGKTTta~nLA~~La~~G~rVLlID~ 36 (290)
T CHL00072 8 KGGIGKSTTSCNISIALARRGKKVLQIGC 36 (290)
T ss_pred CCCCcHHHHHHHHHHHHHHCCCeEEEEec
Confidence 77999999877777778889999988743
No 306
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=45.33 E-value=87 Score=36.02 Aligned_cols=52 Identities=23% Similarity=0.187 Sum_probs=37.8
Q ss_pred CCCchHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEE
Q 002515 24 TGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGL 76 (913)
Q Consensus 24 TGEGKTLva~lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLsv~~ 76 (913)
-|.|||.+.+=.|+..--.|+.|.+...--. -.=-.|+++---+.+|+.|..
T Consensus 148 NG~GKTTTIaKLA~~l~~~g~~VllaA~DTF-RAaAiEQL~~w~er~gv~vI~ 199 (340)
T COG0552 148 NGVGKTTTIAKLAKYLKQQGKSVLLAAGDTF-RAAAIEQLEVWGERLGVPVIS 199 (340)
T ss_pred CCCchHhHHHHHHHHHHHCCCeEEEEecchH-HHHHHHHHHHHHHHhCCeEEc
Confidence 5999999877666666678999988776443 333456677777788888764
No 307
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=45.30 E-value=17 Score=41.82 Aligned_cols=59 Identities=22% Similarity=0.385 Sum_probs=34.0
Q ss_pred hcCC--eEEecCCCchHHHH-HHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEE
Q 002515 15 HDGS--IAEMKTGEGKTLVS-TLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVG 75 (913)
Q Consensus 15 ~~G~--IaEm~TGEGKTLva-~lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLsv~ 75 (913)
.+|. .+.=.=|.|||.+. ++-.++ ...|+.|.+++|+--=|.. ...=.-++++|||.+.
T Consensus 20 ~~~~~~fv~G~~GtGKs~l~~~i~~~~-~~~~~~~~~~a~tg~AA~~-i~~G~T~hs~f~i~~~ 81 (364)
T PF05970_consen 20 EEGLNFFVTGPAGTGKSFLIKAIIDYL-RSRGKKVLVTAPTGIAAFN-IPGGRTIHSFFGIPIN 81 (364)
T ss_pred cCCcEEEEEcCCCCChhHHHHHHHHHh-ccccceEEEecchHHHHHh-ccCCcchHHhcCcccc
Confidence 4555 44556789999653 444443 3356677777776554443 3111246777887765
No 308
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=45.28 E-value=66 Score=38.22 Aligned_cols=13 Identities=0% Similarity=0.271 Sum_probs=10.9
Q ss_pred CceEEEeecchhh
Q 002515 125 PFHFAIVDEVDSV 137 (913)
Q Consensus 125 ~~~~aIVDEvDsi 137 (913)
..+++||||+|.+
T Consensus 202 ~~dvLiIDDiq~l 214 (445)
T PRK12422 202 NVDALFIEDIEVF 214 (445)
T ss_pred cCCEEEEcchhhh
Confidence 6788999998875
No 309
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=45.22 E-value=53 Score=38.93 Aligned_cols=52 Identities=25% Similarity=0.282 Sum_probs=33.5
Q ss_pred cCCCchHHHHHHHHH-HHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEE
Q 002515 23 KTGEGKTLVSTLAAY-LNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVG 75 (913)
Q Consensus 23 ~TGEGKTLva~lpa~-l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLsv~ 75 (913)
.||.|||.+++-.|. ...-.|+.|+++|.-.|=+.- .+.+....+.+|+.+.
T Consensus 231 ptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA-~eQLk~yAe~lgvp~~ 283 (432)
T PRK12724 231 PTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAA-IEQLKRYADTMGMPFY 283 (432)
T ss_pred CCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhH-HHHHHHHHHhcCCCee
Confidence 799999987665554 334568899999986643321 2344444477777653
No 310
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=44.66 E-value=25 Score=38.47 Aligned_cols=35 Identities=26% Similarity=0.233 Sum_probs=23.9
Q ss_pred eEEecCCCchHH-HHHHHHHHHHHcCCcEEEEecCHH
Q 002515 19 IAEMKTGEGKTL-VSTLAAYLNALTGEGVHVVTVNDY 54 (913)
Q Consensus 19 IaEm~TGEGKTL-va~lpa~l~AL~G~~VhVvT~Ndy 54 (913)
+.-=.+|.|||- ++++.-.+. -.|..|.++|+++-
T Consensus 109 ~l~G~~G~GKThLa~Ai~~~l~-~~g~sv~f~~~~el 144 (254)
T COG1484 109 VLLGPPGVGKTHLAIAIGNELL-KAGISVLFITAPDL 144 (254)
T ss_pred EEECCCCCcHHHHHHHHHHHHH-HcCCeEEEEEHHHH
Confidence 666679999996 444444433 55788888888653
No 311
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=44.64 E-value=36 Score=29.51 Aligned_cols=28 Identities=32% Similarity=0.316 Sum_probs=20.7
Q ss_pred cCCCchHHHHHHHHHHHHHcCCcEEEEe
Q 002515 23 KTGEGKTLVSTLAAYLNALTGEGVHVVT 50 (913)
Q Consensus 23 ~TGEGKTLva~lpa~l~AL~G~~VhVvT 50 (913)
+.|+|||.++...+...+-.|..|.++-
T Consensus 7 ~~G~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 7 KGGVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 4599999876666655555788888777
No 312
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=44.63 E-value=53 Score=30.61 Aligned_cols=65 Identities=14% Similarity=0.129 Sum_probs=0.0
Q ss_pred cCCCchHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHHhccCCCeEEECCCcc
Q 002515 23 KTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNYRCDITYTNNSEL 102 (913)
Q Consensus 23 ~TGEGKTLva~lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLsv~~i~~~~~~~~r~~aY~~DI~YgT~~e~ 102 (913)
..|.|||..+-..+- ..|..+.-+..++-...
T Consensus 6 ~~G~GKT~l~~~la~---~l~~~~~~i~~~~~~~~--------------------------------------------- 37 (132)
T PF00004_consen 6 PPGTGKTTLARALAQ---YLGFPFIEIDGSELISS--------------------------------------------- 37 (132)
T ss_dssp STTSSHHHHHHHHHH---HTTSEEEEEETTHHHTS---------------------------------------------
T ss_pred cCCCCeeHHHHHHHh---hcccccccccccccccc---------------------------------------------
Q ss_pred hhhHHHHhhccchhhhhccCCCC-ceEEEeecchhhh
Q 002515 103 GFDYLRDNLAANSEQLVMRWPKP-FHFAIVDEVDSVL 138 (913)
Q Consensus 103 ~fDyLrD~l~~~~~~~v~r~~R~-~~~aIVDEvDsiL 138 (913)
.++-...++..--...... . ..+++|||+|.+.
T Consensus 38 ~~~~~~~~i~~~~~~~~~~---~~~~vl~iDe~d~l~ 71 (132)
T PF00004_consen 38 YAGDSEQKIRDFFKKAKKS---AKPCVLFIDEIDKLF 71 (132)
T ss_dssp STTHHHHHHHHHHHHHHHT---STSEEEEEETGGGTS
T ss_pred ccccccccccccccccccc---ccceeeeeccchhcc
No 313
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=44.43 E-value=28 Score=44.50 Aligned_cols=14 Identities=29% Similarity=0.479 Sum_probs=12.4
Q ss_pred CceEEEeecchhhh
Q 002515 125 PFHFAIVDEVDSVL 138 (913)
Q Consensus 125 ~~~~aIVDEvDsiL 138 (913)
++.++||||+|.|=
T Consensus 120 ~~KV~IIDEad~lt 133 (824)
T PRK07764 120 RYKIFIIDEAHMVT 133 (824)
T ss_pred CceEEEEechhhcC
Confidence 68899999999984
No 314
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=44.41 E-value=28 Score=44.54 Aligned_cols=138 Identities=22% Similarity=0.338 Sum_probs=74.9
Q ss_pred CCeEEecCCCchHH--HHHH-HHHHHH-HcCCcEEEEecCHHHHHHHHHHHHHHhhhcC-C------eEEEEcCCCCHHH
Q 002515 17 GSIAEMKTGEGKTL--VSTL-AAYLNA-LTGEGVHVVTVNDYLAQRDAEWMERVHRFLG-L------SVGLIQRGMIPEE 85 (913)
Q Consensus 17 G~IaEm~TGEGKTL--va~l-pa~l~A-L~G~~VhVvT~NdyLA~RDae~~~~~y~~LG-L------sv~~i~~~~~~~~ 85 (913)
|.|.-=--|=|||| ++.| .+.++- |.-++|.||||=..+- .||..|=+|+- + .|.-+..-..+++
T Consensus 698 GcILAHcMGLGKTlQVvtflhTvL~c~klg~ktaLvV~PlNt~~----NW~~EFekWm~~~e~~~~leV~eL~~vkr~e~ 773 (1567)
T KOG1015|consen 698 GCILAHCMGLGKTLQVVTFLHTVLLCDKLGFKTALVVCPLNTAL----NWMNEFEKWMEGLEDDEKLEVSELATVKRPEE 773 (1567)
T ss_pred chHHHHhhcccceehhhHHHHHHHHhhccCCceEEEEcchHHHH----HHHHHHHHhcccccccccceeehhhhccChHH
Confidence 55544445899998 2222 222222 3336899999977654 59998888874 3 3333322234566
Q ss_pred HHhccC---C--CeEEECCCcchhhHHHHhhccc-------h----hhhhccCCCCceEEEeecchhhhhccCC------
Q 002515 86 RRSNYR---C--DITYTNNSELGFDYLRDNLAAN-------S----EQLVMRWPKPFHFAIVDEVDSVLIDEGR------ 143 (913)
Q Consensus 86 r~~aY~---~--DI~YgT~~e~~fDyLrD~l~~~-------~----~~~v~r~~R~~~~aIVDEvDsiLiDea~------ 143 (913)
|.-+.. . .|.. +|.|..|..-..+ . ..++-+ +.++++-||+|-+=-+.+.
T Consensus 774 R~~~L~~W~~~ggVmI-----iGYdmyRnLa~gr~vk~rk~ke~f~k~lvdp---GPD~vVCDE~HiLKNeksa~Skam~ 845 (1567)
T KOG1015|consen 774 RSYMLQRWQEDGGVMI-----IGYDMYRNLAQGRNVKSRKLKEIFNKALVDP---GPDFVVCDEGHILKNEKSAVSKAMN 845 (1567)
T ss_pred HHHHHHHHHhcCCEEE-----EehHHHHHHhcccchhhhHHHHHHHHhccCC---CCCeEEecchhhhccchHHHHHHHH
Confidence 653332 1 2211 2444444322211 0 112334 8899999999976544442
Q ss_pred -----CceeccCCC-CCCccchHHHHHHH
Q 002515 144 -----NPLLISGEA-SKDVARYPVAAKVA 166 (913)
Q Consensus 144 -----tPLiiSg~~-~~~~~~y~~~~~~v 166 (913)
...+++|.+ .++-.-|+++-.||
T Consensus 846 ~irtkRRI~LTGTPLQNNLmEY~CMVnFV 874 (1567)
T KOG1015|consen 846 SIRTKRRIILTGTPLQNNLMEYHCMVNFV 874 (1567)
T ss_pred HHHhheeEEeecCchhhhhHHHHHHHHhc
Confidence 225677753 33344577776665
No 315
>PRK11823 DNA repair protein RadA; Provisional
Probab=44.27 E-value=1.2e+02 Score=36.13 Aligned_cols=88 Identities=14% Similarity=0.151 Sum_probs=49.7
Q ss_pred eEEecCCCchHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHHhccCCCeEEEC
Q 002515 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNYRCDITYTN 98 (913)
Q Consensus 19 IaEm~TGEGKTLva~lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLsv~~i~~~~~~~~r~~aY~~DI~YgT 98 (913)
+.-=.+|.|||..+.-.+...+-.|.+|..++..+-.. ++..-.+.||+...- +.+..
T Consensus 84 lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~-----qi~~ra~rlg~~~~~-----------------l~~~~ 141 (446)
T PRK11823 84 LIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESAS-----QIKLRAERLGLPSDN-----------------LYLLA 141 (446)
T ss_pred EEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHH-----HHHHHHHHcCCChhc-----------------EEEeC
Confidence 34557899999866666654555688888888754332 222223455553210 22222
Q ss_pred CCcchhhHHHHhhccchhhhhccCCCCceEEEeecchhhhhc
Q 002515 99 NSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLID 140 (913)
Q Consensus 99 ~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiD 140 (913)
... ++.|...+. .. +..++|||++..+..+
T Consensus 142 e~~--l~~i~~~i~-------~~---~~~lVVIDSIq~l~~~ 171 (446)
T PRK11823 142 ETN--LEAILATIE-------EE---KPDLVVIDSIQTMYSP 171 (446)
T ss_pred CCC--HHHHHHHHH-------hh---CCCEEEEechhhhccc
Confidence 222 344443331 12 6789999999988644
No 316
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=44.04 E-value=1e+02 Score=35.89 Aligned_cols=39 Identities=26% Similarity=0.179 Sum_probs=26.7
Q ss_pred cCC--eEEecCCCchHHHHHHHHHHHHHcCCcEEEEecCHH
Q 002515 16 DGS--IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDY 54 (913)
Q Consensus 16 ~G~--IaEm~TGEGKTLva~lpa~l~AL~G~~VhVvT~Ndy 54 (913)
.|. +.--.+|.|||..+.-.+...+-.|.+|..++..+.
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs 121 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEES 121 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcC
Confidence 455 455579999998766666555666778888876543
No 317
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=43.88 E-value=26 Score=38.09 Aligned_cols=30 Identities=27% Similarity=0.190 Sum_probs=24.0
Q ss_pred eEEecCCCchHHHHHHHHHHHHH-cCCcEEEE
Q 002515 19 IAEMKTGEGKTLVSTLAAYLNAL-TGEGVHVV 49 (913)
Q Consensus 19 IaEm~TGEGKTLva~lpa~l~AL-~G~~VhVv 49 (913)
|+ -|-|-|||.+++=.|+..|. .|++|.||
T Consensus 7 v~-~KGGVGKTT~a~nLA~~La~~~G~rvLli 37 (275)
T PRK13233 7 IY-GKGGIGKSTTTQNTAAAMAYFHDKKVFIH 37 (275)
T ss_pred EE-cCCCCcHHHHHHHHHHHHHHhcCCeEEEe
Confidence 46 48899999877766666786 69999988
No 318
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=43.86 E-value=90 Score=32.81 Aligned_cols=37 Identities=27% Similarity=0.372 Sum_probs=26.9
Q ss_pred cCCeEEe--cCCCchHHHHHHHHHHHHHcCCcEEEEecC
Q 002515 16 DGSIAEM--KTGEGKTLVSTLAAYLNALTGEGVHVVTVN 52 (913)
Q Consensus 16 ~G~IaEm--~TGEGKTLva~lpa~l~AL~G~~VhVvT~N 52 (913)
.|.+.++ .+|.|||..+.-.++-.+..|.+|..++.-
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 5665444 799999987666665456778888888876
No 319
>PRK04596 minC septum formation inhibitor; Reviewed
Probab=43.73 E-value=14 Score=40.60 Aligned_cols=44 Identities=41% Similarity=0.691 Sum_probs=38.9
Q ss_pred chhhhhcCceEEEeccCCCchhhHhhhhcc--cccCCCCCceeEEEeccchhhhhcc
Q 002515 551 GSEVKRLGGLHVIGTSLHESRRIDNQLRGR--AGRQGDPGSTRFMVSLQDEMFQKFS 605 (913)
Q Consensus 551 ~~~V~~~GGL~VIgTerhes~RiD~QLrGR--agRQGdpGss~f~lSLeD~l~~~f~ 605 (913)
..+|..-|-.||.|+ |||| ||-+||.....|..+||=+|+.+-|
T Consensus 171 Gaev~A~G~i~v~g~-----------lrG~a~AG~~g~~~a~I~~~~~~~elv~IaG 216 (248)
T PRK04596 171 GAEVIADGSIHIYGT-----------LRGRALAGAQGNPDARIFCRDFHAELVAIAG 216 (248)
T ss_pred CCEEEeCCCEEEEEE-----------eccEEEecCCCCCccEEEeecCCccEEEEcc
Confidence 468888999999998 4555 7999999999999999999999877
No 320
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=43.54 E-value=33 Score=41.21 Aligned_cols=13 Identities=31% Similarity=0.580 Sum_probs=11.7
Q ss_pred CceEEEeecchhh
Q 002515 125 PFHFAIVDEVDSV 137 (913)
Q Consensus 125 ~~~~aIVDEvDsi 137 (913)
++.++||||||.+
T Consensus 121 ~~KV~IIDEah~L 133 (484)
T PRK14956 121 KYKVYIIDEVHML 133 (484)
T ss_pred CCEEEEEechhhc
Confidence 6789999999986
No 321
>PF14417 MEDS: MEDS: MEthanogen/methylotroph, DcmR Sensory domain
Probab=43.32 E-value=53 Score=34.13 Aligned_cols=54 Identities=17% Similarity=0.098 Sum_probs=47.4
Q ss_pred cCCCeEEeChhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHCCCC
Q 002515 326 DLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIP 379 (913)
Q Consensus 326 d~~d~v~~t~~~k~~aii~ei~~~~~~grPVLI~t~Si~~SE~ls~~L~~~gi~ 379 (913)
+|--.+|.+.++.+..++.-|.+-.+.|.+||+++.+....+.+.+.|++.|+.
T Consensus 20 ~H~c~~Y~~~~e~~~~~~~Fi~~GL~~ge~~l~v~~~~~~~~~l~~~L~~~~~d 73 (191)
T PF14417_consen 20 DHICAFYDDEEELLEVLVPFIREGLARGERCLYVAPDPRRVEELRDELRKAGPD 73 (191)
T ss_pred ceEEEEECCHHHHHHHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHhcCCc
Confidence 344577999999999999999999999999999999888888999999887654
No 322
>PRK04523 N-acetylornithine carbamoyltransferase; Reviewed
Probab=43.31 E-value=1.3e+02 Score=34.45 Aligned_cols=91 Identities=22% Similarity=0.233 Sum_probs=52.8
Q ss_pred chhHHHHHHH-H--hcCC------eEEecCCCch---HHHHHHHHHHHHHcCCcEEEEec-CHHHHHH-HHHHHHHHhhh
Q 002515 4 FDVQIIGGAV-L--HDGS------IAEMKTGEGK---TLVSTLAAYLNALTGEGVHVVTV-NDYLAQR-DAEWMERVHRF 69 (913)
Q Consensus 4 ~dvQl~g~l~-L--~~G~------IaEm~TGEGK---TLva~lpa~l~AL~G~~VhVvT~-NdyLA~R-Dae~~~~~y~~ 69 (913)
+|+|.++=+. + +.|. |+-+-+|-|| +.++---+.+.+..|-.|.+++| -.|.-.. ..++...+...
T Consensus 148 HPtQaLaDl~Ti~e~~g~~~~g~ki~i~~~gd~~~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~ 227 (335)
T PRK04523 148 HPCQELAHALALQEHFGTTLRGKKYVLTWTYHPKPLNTAVANSALLIATRLGMDVTLLCPTPDYILDERYMDWAEQNAAE 227 (335)
T ss_pred ChHHHHHHHHHHHHHhCCccCCCEEEEEEeccCcccccHHHHHHHHHHHHcCCEEEEECCchhhCCCHHHHHHHHHHHHH
Confidence 7899888653 2 1233 5556777876 33332222334567999999999 4442221 12334445566
Q ss_pred cCCeEEEEcCCCCHHHHHhccCCCeEEECC
Q 002515 70 LGLSVGLIQRGMIPEERRSNYRCDITYTNN 99 (913)
Q Consensus 70 LGLsv~~i~~~~~~~~r~~aY~~DI~YgT~ 99 (913)
.|.++.+.. ++ ....-+|||+|++.
T Consensus 228 ~g~~~~~~~---d~--~ea~~~aDvvy~~~ 252 (335)
T PRK04523 228 SGGSLTVSH---DI--DSAYAGADVVYAKS 252 (335)
T ss_pred cCCeEEEEc---CH--HHHhCCCCEEEece
Confidence 677765431 12 23455799999976
No 323
>PRK00339 minC septum formation inhibitor; Reviewed
Probab=43.21 E-value=14 Score=40.51 Aligned_cols=45 Identities=36% Similarity=0.591 Sum_probs=40.4
Q ss_pred cchhhhhcCceEEEeccCCCchhhHhhhhcc--cccCCCCCceeEEEeccchhhhhcc
Q 002515 550 EGSEVKRLGGLHVIGTSLHESRRIDNQLRGR--AGRQGDPGSTRFMVSLQDEMFQKFS 605 (913)
Q Consensus 550 ~~~~V~~~GGL~VIgTerhes~RiD~QLrGR--agRQGdpGss~f~lSLeD~l~~~f~ 605 (913)
...+|.+-|=.||.|+ |||| ||-+||.....|..+||=+|+++-|
T Consensus 171 ~GAEViAdGnIhVyG~-----------LRGrA~AGa~Gd~~ArIf~~~l~aelvsIAg 217 (249)
T PRK00339 171 PGAELLADGNIHVYGP-----------MRGRALAGIKGDTKARIFCQQLEAELVSIAG 217 (249)
T ss_pred CCCEEEeCCCEEEEEE-----------cccEEEecCCCCCccEEEeccCCccEEEEcc
Confidence 3568899999999998 6787 6999999999999999999999876
No 324
>PRK11670 antiporter inner membrane protein; Provisional
Probab=42.29 E-value=28 Score=40.24 Aligned_cols=37 Identities=24% Similarity=0.249 Sum_probs=29.3
Q ss_pred eEEecCCCchHHHHHHHHHHHHHcCCcEEEEecCHHH
Q 002515 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYL 55 (913)
Q Consensus 19 IaEm~TGEGKTLva~lpa~l~AL~G~~VhVvT~NdyL 55 (913)
|+--|-|+|||.+++-.|+..|-.|++|.+|=-..+-
T Consensus 112 V~S~KGGVGKTT~avNLA~aLA~~G~rVlLID~D~qg 148 (369)
T PRK11670 112 VSSGKGGVGKSSTAVNLALALAAEGAKVGILDADIYG 148 (369)
T ss_pred EeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence 5666889999998887777778889999888665443
No 325
>PRK12377 putative replication protein; Provisional
Probab=41.66 E-value=33 Score=37.60 Aligned_cols=37 Identities=32% Similarity=0.436 Sum_probs=25.0
Q ss_pred eEEecCCCchHH-HHHHHHHHHHHcCCcEEEEecCHHHH
Q 002515 19 IAEMKTGEGKTL-VSTLAAYLNALTGEGVHVVTVNDYLA 56 (913)
Q Consensus 19 IaEm~TGEGKTL-va~lpa~l~AL~G~~VhVvT~NdyLA 56 (913)
+.-=.+|.|||- +.++.-.+ .-.|..|.++|.++.+.
T Consensus 105 ~l~G~~GtGKThLa~AIa~~l-~~~g~~v~~i~~~~l~~ 142 (248)
T PRK12377 105 VFSGKPGTGKNHLAAAIGNRL-LAKGRSVIVVTVPDVMS 142 (248)
T ss_pred EEECCCCCCHHHHHHHHHHHH-HHcCCCeEEEEHHHHHH
Confidence 555579999995 44444442 34688998888876544
No 326
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=41.58 E-value=16 Score=39.54 Aligned_cols=29 Identities=28% Similarity=0.176 Sum_probs=22.8
Q ss_pred eEEecCCCchHHHHHHHHHHHHHcCCcEEEE
Q 002515 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVV 49 (913)
Q Consensus 19 IaEm~TGEGKTLva~lpa~l~AL~G~~VhVv 49 (913)
|+. |-|.|||.+++-.|+..|..| +|.+|
T Consensus 7 v~~-KGGvGKTT~a~nLA~~La~~G-rVLli 35 (264)
T PRK13231 7 IYG-KGGIGKSTTVSNMAAAYSNDH-RVLVI 35 (264)
T ss_pred EEC-CCCCcHHHHHHHHhcccCCCC-EEEEE
Confidence 453 889999998777777677788 88877
No 327
>PRK05595 replicative DNA helicase; Provisional
Probab=41.45 E-value=1.2e+02 Score=35.99 Aligned_cols=111 Identities=13% Similarity=0.155 Sum_probs=60.4
Q ss_pred hcCC--eEEecCCCchHHHHHHHHHHHHH-cCCcEEEEecC---HHHHHHHHHHHHHHhhhcCCeEEEEc-CCCCHHHHH
Q 002515 15 HDGS--IAEMKTGEGKTLVSTLAAYLNAL-TGEGVHVVTVN---DYLAQRDAEWMERVHRFLGLSVGLIQ-RGMIPEERR 87 (913)
Q Consensus 15 ~~G~--IaEm~TGEGKTLva~lpa~l~AL-~G~~VhVvT~N---dyLA~RDae~~~~~y~~LGLsv~~i~-~~~~~~~r~ 87 (913)
..|. |.=..||-|||..++-.+.-.|+ .|++|.+++.- +.|+.|-.. ...|++...+. +.++..+..
T Consensus 199 ~~g~liviaarpg~GKT~~al~ia~~~a~~~g~~vl~fSlEms~~~l~~R~~a------~~~~v~~~~~~~~~l~~~e~~ 272 (444)
T PRK05595 199 QKGDMILIAARPSMGKTTFALNIAEYAALREGKSVAIFSLEMSKEQLAYKLLC------SEANVDMLRLRTGNLEDKDWE 272 (444)
T ss_pred CCCcEEEEEecCCCChHHHHHHHHHHHHHHcCCcEEEEecCCCHHHHHHHHHH------HhcCCCHHHHhcCCCCHHHHH
Confidence 3565 56788999999866655543354 59999888764 455555322 22334433222 223333321
Q ss_pred hcc-------CCCeEEECCCcchhhHHHHhhccchhhhhccCCCCceEEEeecchhh
Q 002515 88 SNY-------RCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV 137 (913)
Q Consensus 88 ~aY-------~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsi 137 (913)
... ...+-.-....+..+.++..+..- .... +++++|||=..-|
T Consensus 273 ~~~~~~~~l~~~~l~i~d~~~~t~~~i~~~~r~~---~~~~---~~~~vvIDylql~ 323 (444)
T PRK05595 273 NIARASGPLAAAKIFIDDTAGVSVMEMRSKCRRL---KIEH---GIDMILIDYLQLM 323 (444)
T ss_pred HHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHH---HHhc---CCCEEEEeHHHhc
Confidence 111 123433344456667777665421 1123 6899999987644
No 328
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=41.34 E-value=1.3e+02 Score=37.99 Aligned_cols=115 Identities=30% Similarity=0.392 Sum_probs=66.3
Q ss_pred eEEecCCCchHHH-HHHHHHHHHHcC---CcEEEEecCHHHHHHHHHHHHHHhhhcC-CeEEEEcCCCCHHHH-------
Q 002515 19 IAEMKTGEGKTLV-STLAAYLNALTG---EGVHVVTVNDYLAQRDAEWMERVHRFLG-LSVGLIQRGMIPEER------- 86 (913)
Q Consensus 19 IaEm~TGEGKTLv-a~lpa~l~AL~G---~~VhVvT~NdyLA~RDae~~~~~y~~LG-Lsv~~i~~~~~~~~r------- 86 (913)
|.-=.-|=|||.- ..+.|+| |-.- .+-.||||...|- .|...|-+|+. ++|.-.-|+ + .+|
T Consensus 590 ILADeMGLGKTVQsisvlAhL-aE~~nIwGPFLVVtpaStL~----NWaqEisrFlP~~k~lpywGs-~-~eRkiLrKfw 662 (1185)
T KOG0388|consen 590 ILADEMGLGKTVQSISVLAHL-AETHNIWGPFLVVTPASTLH----NWAQEISRFLPSFKVLPYWGS-P-SERKILRKFW 662 (1185)
T ss_pred eehhhhccchhHHHHHHHHHH-HHhccCCCceEEeehHHHHh----HHHHHHHHhCccceeecCcCC-h-hhhHHHHHhc
Confidence 3333569999984 4444443 3332 2568999988886 48888888874 555433333 2 222
Q ss_pred --HhccC----CCeEEECCCcchhhHHHHhhccchhhhhccCCCCceEEEeecchhh-----------hhccCCCceecc
Q 002515 87 --RSNYR----CDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV-----------LIDEGRNPLLIS 149 (913)
Q Consensus 87 --~~aY~----~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsi-----------LiDea~tPLiiS 149 (913)
+..|. .+|+.++---+.-| +...++- +-.|.|+|||-.| |.=.+|+.|.++
T Consensus 663 ~rKnmY~rna~fhVviTSYQlvVtD----------eky~qkv--KWQYMILDEAQAIKSSsS~RWKtLLsF~cRNRLLLT 730 (1185)
T KOG0388|consen 663 NRKNMYRRNAPFHVVITSYQLVVTD----------EKYLQKV--KWQYMILDEAQAIKSSSSSRWKTLLSFKCRNRLLLT 730 (1185)
T ss_pred chhhhhccCCCceEEEEeeeeeech----------HHHHHhh--hhhheehhHHHHhhhhhhhHHHHHhhhhccceeeec
Confidence 23343 36775553322211 1111210 5679999999854 444567778888
Q ss_pred CCC
Q 002515 150 GEA 152 (913)
Q Consensus 150 g~~ 152 (913)
|.+
T Consensus 731 GTP 733 (1185)
T KOG0388|consen 731 GTP 733 (1185)
T ss_pred CCc
Confidence 854
No 329
>PF13361 UvrD_C: UvrD-like helicase C-terminal domain; PDB: 1UAA_B 3U4Q_A 3U44_A 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A ....
Probab=41.26 E-value=1.3e+02 Score=32.91 Aligned_cols=55 Identities=25% Similarity=0.439 Sum_probs=43.5
Q ss_pred EEeChhHHHHHHHHHHHHHHhcCCc---EEEEecchhhHHHHHHHHHHCCCCeEEecc
Q 002515 331 SFATARGKWEYARQEVESMFRLGRP---VLVGSTSVENSEYLSDLLKQQGIPHNVLNA 385 (913)
Q Consensus 331 v~~t~~~k~~aii~ei~~~~~~grP---VLI~t~Si~~SE~ls~~L~~~gi~~~vLnA 385 (913)
.+.+..+....|+++|.+....|-| |-|.|++-..+..+++.|.+.|||+.+...
T Consensus 52 ~~~~~~~e~~~i~~~I~~l~~~~~~~~diAVL~R~~~~~~~i~~~L~~~gIp~~~~~~ 109 (351)
T PF13361_consen 52 EFDNEEEEAEYIAEEIKELIRNGIPPSDIAVLVRTNSQIKEIEDALKEAGIPYRISGS 109 (351)
T ss_dssp EESSHHHHHHHHHHHHHHHHHTTS-GGGEEEEESSGGHHHHHHHHHHHTTS-EEESSS
T ss_pred ccCCHHHHHHHHHHHHHHHhhcCCCcccEEEEEECchhHHHHHHHHhhhcceeEeccc
Confidence 3567777778899999987665644 899999999999999999999999866443
No 330
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=41.21 E-value=32 Score=36.02 Aligned_cols=32 Identities=22% Similarity=0.177 Sum_probs=24.0
Q ss_pred ecCCCchHHHHHHHHHHHHH-cCCcEEEEecCH
Q 002515 22 MKTGEGKTLVSTLAAYLNAL-TGEGVHVVTVND 53 (913)
Q Consensus 22 m~TGEGKTLva~lpa~l~AL-~G~~VhVvT~Nd 53 (913)
-+-|+|||.+++..|+..|. .|++|.+|-.+.
T Consensus 43 ~kgG~GkSt~a~nLA~~la~~~g~~VLlvD~D~ 75 (207)
T TIGR03018 43 SLPGEGKSFTAINLAISLAQEYDKTVLLIDADL 75 (207)
T ss_pred CCCCCCHHHHHHHHHHHHHHhcCCeEEEEECCC
Confidence 35799999876655554564 699999997764
No 331
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=41.03 E-value=1.2e+02 Score=34.76 Aligned_cols=57 Identities=12% Similarity=0.141 Sum_probs=35.7
Q ss_pred CeEEECC---CcchhhHHHHhhccchhhhhccCCCCceEEEeecchhhhhccCCCceeccCCCCCCccchHHHHHHHHHh
Q 002515 93 DITYTNN---SELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELL 169 (913)
Q Consensus 93 DI~YgT~---~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~tPLiiSg~~~~~~~~y~~~~~~v~~l 169 (913)
|+.+-.+ ...+.|-.|+-...-....... +..++|||+||.|= -..++.+.+.|
T Consensus 75 D~~~i~p~~~~~I~id~iR~l~~~~~~~~~~g---~~KV~iI~~a~~m~--------------------~~AaNaLLKtL 131 (325)
T PRK06871 75 DFHILEPIDNKDIGVDQVREINEKVSQHAQQG---GNKVVYIQGAERLT--------------------EAAANALLKTL 131 (325)
T ss_pred CEEEEccccCCCCCHHHHHHHHHHHhhccccC---CceEEEEechhhhC--------------------HHHHHHHHHHh
Confidence 6766644 3567777776322100011223 67899999999984 13577888888
Q ss_pred ccC
Q 002515 170 VQG 172 (913)
Q Consensus 170 ~~~ 172 (913)
+++
T Consensus 132 EEP 134 (325)
T PRK06871 132 EEP 134 (325)
T ss_pred cCC
Confidence 775
No 332
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=40.95 E-value=24 Score=37.22 Aligned_cols=35 Identities=26% Similarity=0.316 Sum_probs=25.8
Q ss_pred eEEecCCCchHHHHHHHHHHHHHc-CCcEEEEecCH
Q 002515 19 IAEMKTGEGKTLVSTLAAYLNALT-GEGVHVVTVND 53 (913)
Q Consensus 19 IaEm~TGEGKTLva~lpa~l~AL~-G~~VhVvT~Nd 53 (913)
++.=.+|.|||+.+.=-++-.+.. |.+|..||..+
T Consensus 23 li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee 58 (226)
T PF06745_consen 23 LISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEE 58 (226)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS
T ss_pred EEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecC
Confidence 677789999998777666656677 99999888744
No 333
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=40.73 E-value=28 Score=39.63 Aligned_cols=33 Identities=30% Similarity=0.321 Sum_probs=24.9
Q ss_pred cCCCchHHHHHHHHHHHHHcCCcEEEEecCHHH
Q 002515 23 KTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYL 55 (913)
Q Consensus 23 ~TGEGKTLva~lpa~l~AL~G~~VhVvT~NdyL 55 (913)
|=|-|||-+++-.|+..|-.|++|++|++-...
T Consensus 10 KGGVGKTT~aaA~A~~lA~~g~kvLlvStDPAh 42 (322)
T COG0003 10 KGGVGKTTIAAATAVKLAESGKKVLLVSTDPAH 42 (322)
T ss_pred CCcccHHHHHHHHHHHHHHcCCcEEEEEeCCCC
Confidence 458999876555665678888999999876543
No 334
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=40.32 E-value=34 Score=41.99 Aligned_cols=51 Identities=27% Similarity=0.380 Sum_probs=37.5
Q ss_pred eEEecCCCchHHHHHHHH-HHH-----HHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCe
Q 002515 19 IAEMKTGEGKTLVSTLAA-YLN-----ALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLS 73 (913)
Q Consensus 19 IaEm~TGEGKTLva~lpa-~l~-----AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLs 73 (913)
|+|=.-|+|||.+|+=-+ ||. .|++++|.|+.||..++. -...+.-.||..
T Consensus 230 VVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~vlvl~PN~vFle----Yis~VLPeLGe~ 286 (747)
T COG3973 230 VVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPVLVLGPNRVFLE----YISRVLPELGEE 286 (747)
T ss_pred EEecCCCCCchhHHHHHHHHHHhccccccccCceEEEcCcHHHHH----HHHHhchhhccC
Confidence 788889999998766443 331 467789999999998875 455566666665
No 335
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=40.02 E-value=83 Score=33.62 Aligned_cols=27 Identities=26% Similarity=-0.027 Sum_probs=24.4
Q ss_pred CCchHHHHHHHHHHHHHcCCcEEEEec
Q 002515 25 GEGKTLVSTLAAYLNALTGEGVHVVTV 51 (913)
Q Consensus 25 GEGKTLva~lpa~l~AL~G~~VhVvT~ 51 (913)
++|||...+-.++-....|+.|.|.||
T Consensus 14 ~SGKT~eLl~r~~~~~~~g~~v~vfkp 40 (201)
T COG1435 14 FSGKTEELLRRARRYKEAGMKVLVFKP 40 (201)
T ss_pred cCcchHHHHHHHHHHHHcCCeEEEEec
Confidence 589999988888877899999999998
No 336
>PRK08116 hypothetical protein; Validated
Probab=39.96 E-value=31 Score=38.01 Aligned_cols=37 Identities=27% Similarity=0.262 Sum_probs=23.4
Q ss_pred CeEEecCCCchHHHH-HHHHHHHHHcCCcEEEEecCHHH
Q 002515 18 SIAEMKTGEGKTLVS-TLAAYLNALTGEGVHVVTVNDYL 55 (913)
Q Consensus 18 ~IaEm~TGEGKTLva-~lpa~l~AL~G~~VhVvT~NdyL 55 (913)
-+.-=.+|.|||..+ ++.-.+.. .|..|..++.++.+
T Consensus 117 l~l~G~~GtGKThLa~aia~~l~~-~~~~v~~~~~~~ll 154 (268)
T PRK08116 117 LLLWGSVGTGKTYLAACIANELIE-KGVPVIFVNFPQLL 154 (268)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH-cCCeEEEEEHHHHH
Confidence 466667999999644 33333222 37888777765544
No 337
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=39.79 E-value=35 Score=37.38 Aligned_cols=33 Identities=21% Similarity=0.319 Sum_probs=25.1
Q ss_pred eEEecCCCchHHHHHHHHHHHHHcCCcEEEEec
Q 002515 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTV 51 (913)
Q Consensus 19 IaEm~TGEGKTLva~lpa~l~AL~G~~VhVvT~ 51 (913)
|..-+-|.|||.+++..+...+..|+.|+++-.
T Consensus 7 i~~~KGGvGKSt~a~~la~~l~~~g~~vl~iD~ 39 (241)
T PRK13886 7 VLQGKGGVGKSFIAATIAQYKASKGQKPLCIDT 39 (241)
T ss_pred EecCCCCCcHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 455678999999766655556788999998843
No 338
>PRK07413 hypothetical protein; Validated
Probab=39.47 E-value=79 Score=36.96 Aligned_cols=31 Identities=26% Similarity=0.344 Sum_probs=21.7
Q ss_pred eEEecCCCchHH-HHHHHHHHHHHc-CC------cEEEE
Q 002515 19 IAEMKTGEGKTL-VSTLAAYLNALT-GE------GVHVV 49 (913)
Q Consensus 19 IaEm~TGEGKTL-va~lpa~l~AL~-G~------~VhVv 49 (913)
++++-||.||-- +|+|-.++.|+. |. +|.||
T Consensus 21 li~VytG~GKGKTTAAlGlalRA~G~G~~~~~~~rV~iv 59 (382)
T PRK07413 21 QLHVYDGEGKGKSQAALGVVLRTIGLGICEKRQTRVLLL 59 (382)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHhcCCCCcCCCCeEEEE
Confidence 788999998843 456666666654 65 78776
No 339
>PRK07952 DNA replication protein DnaC; Validated
Probab=39.29 E-value=36 Score=37.22 Aligned_cols=38 Identities=32% Similarity=0.450 Sum_probs=26.0
Q ss_pred CCeEEecCCCchHH-HHHHHHHHHHHcCCcEEEEecCHHH
Q 002515 17 GSIAEMKTGEGKTL-VSTLAAYLNALTGEGVHVVTVNDYL 55 (913)
Q Consensus 17 G~IaEm~TGEGKTL-va~lpa~l~AL~G~~VhVvT~NdyL 55 (913)
|-+.-=.+|.|||. +.++..++ .-.|+.|.++|..+-+
T Consensus 101 ~~~l~G~~GtGKThLa~aia~~l-~~~g~~v~~it~~~l~ 139 (244)
T PRK07952 101 SFIFSGKPGTGKNHLAAAICNEL-LLRGKSVLIITVADIM 139 (244)
T ss_pred eEEEECCCCCCHHHHHHHHHHHH-HhcCCeEEEEEHHHHH
Confidence 34677789999995 55555553 3468999888765443
No 340
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=38.66 E-value=56 Score=42.15 Aligned_cols=14 Identities=29% Similarity=0.498 Sum_probs=12.4
Q ss_pred CceEEEeecchhhh
Q 002515 125 PFHFAIVDEVDSVL 138 (913)
Q Consensus 125 ~~~~aIVDEvDsiL 138 (913)
++.++||||||.|-
T Consensus 119 k~KViIIDEAh~LT 132 (944)
T PRK14949 119 RFKVYLIDEVHMLS 132 (944)
T ss_pred CcEEEEEechHhcC
Confidence 68899999999884
No 341
>PRK04195 replication factor C large subunit; Provisional
Probab=38.56 E-value=67 Score=38.36 Aligned_cols=14 Identities=29% Similarity=0.484 Sum_probs=11.8
Q ss_pred CceEEEeecchhhh
Q 002515 125 PFHFAIVDEVDSVL 138 (913)
Q Consensus 125 ~~~~aIVDEvDsiL 138 (913)
+..++||||||.+.
T Consensus 98 ~~kvIiIDEaD~L~ 111 (482)
T PRK04195 98 RRKLILLDEVDGIH 111 (482)
T ss_pred CCeEEEEecCcccc
Confidence 56799999999874
No 342
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=37.87 E-value=94 Score=37.46 Aligned_cols=117 Identities=20% Similarity=0.257 Sum_probs=67.5
Q ss_pred cCCeEEecCCCchHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhc-CCeEEEEcCCCCHH-HHHhccCCC
Q 002515 16 DGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFL-GLSVGLIQRGMIPE-ERRSNYRCD 93 (913)
Q Consensus 16 ~G~IaEm~TGEGKTLva~lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~L-GLsv~~i~~~~~~~-~r~~aY~~D 93 (913)
.|-|.-=.-|-|||+-+.- ..++-+.+.+..||+|.-.|.+ |...+-.+. |-.-..++.|.... .-++--+-|
T Consensus 205 ~GGiLADEMGMGKTIQtIa-Lllae~~ra~tLVvaP~VAlmQ----W~nEI~~~T~gslkv~~YhG~~R~~nikel~~YD 279 (791)
T KOG1002|consen 205 AGGILADEMGMGKTIQTIA-LLLAEVDRAPTLVVAPTVALMQ----WKNEIERHTSGSLKVYIYHGAKRDKNIKELMNYD 279 (791)
T ss_pred ccceehhhhccchHHHHHH-HHHhccccCCeeEEccHHHHHH----HHHHHHHhccCceEEEEEecccccCCHHHhhcCc
Confidence 4666555669999984322 2234788999999999988875 766666544 33333445443221 112333457
Q ss_pred eEEECCCcchhhHHHHhhccchh------hhhccCCCCceEEEeecchhhh
Q 002515 94 ITYTNNSELGFDYLRDNLAANSE------QLVMRWPKPFHFAIVDEVDSVL 138 (913)
Q Consensus 94 I~YgT~~e~~fDyLrD~l~~~~~------~~v~r~~R~~~~aIVDEvDsiL 138 (913)
+|-+|-+-+.--|=+.+-..+.. ..++ ++=.++-+|+||||.|=
T Consensus 280 vVLTty~vvEs~yRk~~~GfrrKngv~ke~SlL-Hsi~~~RiIlDEAH~IK 329 (791)
T KOG1002|consen 280 VVLTTYAVVESVYRKQDYGFRRKNGVDKEKSLL-HSIKFYRIILDEAHNIK 329 (791)
T ss_pred EEEEecHHHHHHHHhccccccccCCcccccchh-hhceeeeeehhhhcccc
Confidence 88888765554444432221110 1111 11256779999999874
No 343
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=37.84 E-value=1.2e+02 Score=36.18 Aligned_cols=58 Identities=26% Similarity=0.364 Sum_probs=39.5
Q ss_pred CCCchHHHH-HHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCH
Q 002515 24 TGEGKTLVS-TLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIP 83 (913)
Q Consensus 24 TGEGKTLva-~lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLsv~~i~~~~~~ 83 (913)
-|+|||.++ =|+.|+.- .|+.|.+|+.--|=.. -.++++.+.+-.|+.+--...+.+|
T Consensus 109 QGsGKTTt~~KLA~~lkk-~~~kvllVaaD~~RpA-A~eQL~~La~q~~v~~f~~~~~~~P 167 (451)
T COG0541 109 QGSGKTTTAGKLAKYLKK-KGKKVLLVAADTYRPA-AIEQLKQLAEQVGVPFFGSGTEKDP 167 (451)
T ss_pred cCCChHhHHHHHHHHHHH-cCCceEEEecccCChH-HHHHHHHHHHHcCCceecCCCCCCH
Confidence 499999865 45566555 9999999988665322 2467777888888887654333333
No 344
>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=37.83 E-value=33 Score=37.83 Aligned_cols=33 Identities=27% Similarity=0.254 Sum_probs=26.1
Q ss_pred eEEecCCCchHHHHHHHHHHHHHcCCcEEEEec
Q 002515 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTV 51 (913)
Q Consensus 19 IaEm~TGEGKTLva~lpa~l~AL~G~~VhVvT~ 51 (913)
+.--+=|+|||.+++..|...|..|++|.++=.
T Consensus 62 V~S~kgGvGKStva~nLA~alA~~G~rVlliDa 94 (265)
T COG0489 62 VTSGKGGVGKSTVAVNLAAALAQLGKRVLLLDA 94 (265)
T ss_pred EEeCCCCCcHHHHHHHHHHHHHhcCCcEEEEeC
Confidence 444567999999988888888999988877744
No 345
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=37.83 E-value=37 Score=34.91 Aligned_cols=35 Identities=26% Similarity=0.426 Sum_probs=25.3
Q ss_pred cCCCchHHHHHHHHHHHHHcCCcEEEEecCHHHHH
Q 002515 23 KTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQ 57 (913)
Q Consensus 23 ~TGEGKTLva~lpa~l~AL~G~~VhVvT~NdyLA~ 57 (913)
.+|+|||..+-..+......|.+|.++...+|..-
T Consensus 7 ~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~~~ 41 (179)
T cd02028 7 PSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYVP 41 (179)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCEEEEehhhcccC
Confidence 58999997665555444456888999988877653
No 346
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=37.80 E-value=1.9e+02 Score=33.91 Aligned_cols=111 Identities=14% Similarity=0.118 Sum_probs=57.9
Q ss_pred hcCC--eEEecCCCchHHHHHHHHHHHHH-cCCcEEEEec---CHHHHHHHHHHHHHHhhhcCCeEEEEc-CCCCHHHHH
Q 002515 15 HDGS--IAEMKTGEGKTLVSTLAAYLNAL-TGEGVHVVTV---NDYLAQRDAEWMERVHRFLGLSVGLIQ-RGMIPEERR 87 (913)
Q Consensus 15 ~~G~--IaEm~TGEGKTLva~lpa~l~AL-~G~~VhVvT~---NdyLA~RDae~~~~~y~~LGLsv~~i~-~~~~~~~r~ 87 (913)
..|. ++-..||.|||..+.--++-.|. .|.+|.+++. ...++.|-. -...|++...+. +.++.++..
T Consensus 193 ~~G~l~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~SlEm~~~~i~~R~~------~~~~~v~~~~~~~g~l~~~~~~ 266 (434)
T TIGR00665 193 QPSDLIILAARPSMGKTAFALNIAENAAIKEGKPVAFFSLEMSAEQLAMRML------SSESRVDSQKLRTGKLSDEDWE 266 (434)
T ss_pred CCCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEEeCcCCHHHHHHHHH------HHhcCCCHHHhccCCCCHHHHH
Confidence 4565 67788999999766655553455 5888888764 234444321 122344433332 234443221
Q ss_pred h-------ccCCCeEEECCCcchhhHHHHhhccchhhhhccCCCCceEEEeecchhh
Q 002515 88 S-------NYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV 137 (913)
Q Consensus 88 ~-------aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsi 137 (913)
. .....+..-....+..+.++..+..- .-.. +++++|||=...|
T Consensus 267 ~~~~a~~~l~~~~l~i~d~~~~~~~~i~~~i~~~---~~~~---~~~~vvID~l~~i 317 (434)
T TIGR00665 267 KLTSAAGKLSEAPLYIDDTPGLTITELRAKARRL---KREH---GLGLIVIDYLQLM 317 (434)
T ss_pred HHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHH---HHhc---CCCEEEEcchHhc
Confidence 1 11223322223345566777665421 1112 6789999976554
No 347
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=37.76 E-value=57 Score=29.69 Aligned_cols=36 Identities=19% Similarity=0.299 Sum_probs=30.3
Q ss_pred HhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEecc
Q 002515 350 FRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNA 385 (913)
Q Consensus 350 ~~~grPVLI~t~Si~~SE~ls~~L~~~gi~~~vLnA 385 (913)
...++||+|.|.+-..|...+..|++.|+....|.+
T Consensus 58 ~~~~~~ivv~C~~G~rs~~aa~~L~~~G~~~~~l~G 93 (100)
T cd01523 58 LPDDQEVTVICAKEGSSQFVAELLAERGYDVDYLAG 93 (100)
T ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHcCceeEEeCC
Confidence 357899999999999999999999999998544544
No 348
>PRK04516 minC septum formation inhibitor; Reviewed
Probab=37.76 E-value=19 Score=39.24 Aligned_cols=45 Identities=33% Similarity=0.622 Sum_probs=39.4
Q ss_pred cchhhhhcCceEEEeccCCCchhhHhhhhcc--cccCCCCCceeEEEeccchhhhhcc
Q 002515 550 EGSEVKRLGGLHVIGTSLHESRRIDNQLRGR--AGRQGDPGSTRFMVSLQDEMFQKFS 605 (913)
Q Consensus 550 ~~~~V~~~GGL~VIgTerhes~RiD~QLrGR--agRQGdpGss~f~lSLeD~l~~~f~ 605 (913)
...+|..-|-.||.|+ |||| ||-+||.....|..+||=+|+++-|
T Consensus 155 ~GAev~A~G~i~v~G~-----------lrG~a~AG~~Gd~~A~If~~~l~aelvsIag 201 (235)
T PRK04516 155 QGAELIADGNIHIYAP-----------MRGRALAGAKGDTSARIFIHSMQAELVSVAG 201 (235)
T ss_pred CCCEEEeCCCEEEEEE-----------ccceEEecCCCCCccEEEeccCCccEEEEcc
Confidence 3568889999999998 4555 7999999999999999999999876
No 349
>PRK13342 recombination factor protein RarA; Reviewed
Probab=37.66 E-value=57 Score=38.11 Aligned_cols=14 Identities=14% Similarity=0.197 Sum_probs=11.6
Q ss_pred CceEEEeecchhhh
Q 002515 125 PFHFAIVDEVDSVL 138 (913)
Q Consensus 125 ~~~~aIVDEvDsiL 138 (913)
...+++|||+|++-
T Consensus 92 ~~~vL~IDEi~~l~ 105 (413)
T PRK13342 92 RRTILFIDEIHRFN 105 (413)
T ss_pred CceEEEEechhhhC
Confidence 56799999999863
No 350
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=37.53 E-value=1.3e+02 Score=35.07 Aligned_cols=113 Identities=18% Similarity=0.190 Sum_probs=62.8
Q ss_pred HhcCC--eEEecCCCchHHHHHHHHHHHHH-cCCcEEEEe---cCHHHHHHHHHHHHHHhhhcCCeEEEEc-CCCCHHHH
Q 002515 14 LHDGS--IAEMKTGEGKTLVSTLAAYLNAL-TGEGVHVVT---VNDYLAQRDAEWMERVHRFLGLSVGLIQ-RGMIPEER 86 (913)
Q Consensus 14 L~~G~--IaEm~TGEGKTLva~lpa~l~AL-~G~~VhVvT---~NdyLA~RDae~~~~~y~~LGLsv~~i~-~~~~~~~r 86 (913)
+..|. |+-..+|.|||..+.-.+.-.|+ .|++|.+++ +.+.|+.|-.. ...|++...+. +.++.++.
T Consensus 191 ~~~g~liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fSlEm~~~~l~~Rl~~------~~~~v~~~~~~~~~l~~~~~ 264 (421)
T TIGR03600 191 LVKGDLIVIGARPSMGKTTLALNIAENVALREGKPVLFFSLEMSAEQLGERLLA------SKSGINTGNIRTGRFNDSDF 264 (421)
T ss_pred CCCCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHH------HHcCCCHHHHhcCCCCHHHH
Confidence 34566 56678999999866655543453 588998887 34455544332 23455443332 23343332
Q ss_pred H-------hccCCCeEEECCCcchhhHHHHhhccchhhhhccCCCCceEEEeecchhh
Q 002515 87 R-------SNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV 137 (913)
Q Consensus 87 ~-------~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsi 137 (913)
. ...+..+.+...+.+..+.++..+.. ...+ ..+++++|||=.+.|
T Consensus 265 ~~~~~~~~~l~~~~l~i~d~~~~t~~~i~~~~r~----~~~~-~~~~~lvvIDyLql~ 317 (421)
T TIGR03600 265 NRLLNAVDRLSEKDLYIDDTGGLTVAQIRSIARR----IKRK-KGGLDLIVVDYIQLM 317 (421)
T ss_pred HHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHH----HHHh-cCCCCEEEEeccccc
Confidence 1 11234565555566777777765532 1111 115789999866554
No 351
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=37.05 E-value=27 Score=41.52 Aligned_cols=43 Identities=26% Similarity=0.435 Sum_probs=30.8
Q ss_pred ccCCCeEEECCCcchhhHHHHhhcc----chhhhhccCCCCceEEEeecchhhhh
Q 002515 89 NYRCDITYTNNSELGFDYLRDNLAA----NSEQLVMRWPKPFHFAIVDEVDSVLI 139 (913)
Q Consensus 89 aY~~DI~YgT~~e~~fDyLrD~l~~----~~~~~v~r~~R~~~~aIVDEvDsiLi 139 (913)
-|++||+.++| || ||--+.. ..+...+. ++.++|||-+|.|+.
T Consensus 129 Fy~SDIIiASP--LG---Lr~~i~~~~~~~~d~DFLS---SIEv~iiD~ad~l~M 175 (442)
T PF06862_consen 129 FYSSDIIIASP--LG---LRMIIGEEGEKKRDYDFLS---SIEVLIIDQADVLLM 175 (442)
T ss_pred cccCCEEEECh--HH---HHHHhccccccccccchhh---eeeeEeechhhHHHH
Confidence 46799999998 44 5544442 22334566 899999999999983
No 352
>PF12846 AAA_10: AAA-like domain
Probab=36.91 E-value=78 Score=33.93 Aligned_cols=51 Identities=24% Similarity=0.090 Sum_probs=31.8
Q ss_pred eEEecCCCchHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEE
Q 002515 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLI 77 (913)
Q Consensus 19 IaEm~TGEGKTLva~lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLsv~~i 77 (913)
++-=.||.|||.++...+.-.+..|..|.|+=+....+ ++.+..|..+..+
T Consensus 5 ~i~G~tGsGKT~~~~~l~~~~~~~g~~~~i~D~~g~~~--------~~~~~~~~~~i~~ 55 (304)
T PF12846_consen 5 LILGKTGSGKTTLLKNLLEQLIRRGPRVVIFDPKGDYS--------PLARALGGQYIDI 55 (304)
T ss_pred EEECCCCCcHHHHHHHHHHHHHHcCCCEEEEcCCchHH--------HHHHhcCceEEEe
Confidence 34457999999776655555567788888885543333 3444455555433
No 353
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=36.80 E-value=48 Score=35.51 Aligned_cols=51 Identities=25% Similarity=0.288 Sum_probs=27.0
Q ss_pred eEEecCCCchHHHHHHHHHHHHHcCCcEEEE-ecCHHHHHHHHHHHHHHhhhcCCe
Q 002515 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVV-TVNDYLAQRDAEWMERVHRFLGLS 73 (913)
Q Consensus 19 IaEm~TGEGKTLva~lpa~l~AL~G~~VhVv-T~NdyLA~RDae~~~~~y~~LGLs 73 (913)
+.-=..|.|||.++-.. ++.+....+.++ ..|..+..+ +-+..+...+|++
T Consensus 47 ~l~G~~G~GKTtl~~~l--~~~l~~~~~~~~~~~~~~~~~~--~~l~~i~~~lG~~ 98 (269)
T TIGR03015 47 LITGEVGAGKTTLIRNL--LKRLDQERVVAAKLVNTRVDAE--DLLRMVAADFGLE 98 (269)
T ss_pred EEEcCCCCCHHHHHHHH--HHhcCCCCeEEeeeeCCCCCHH--HHHHHHHHHcCCC
Confidence 55678999999765543 244543333321 122222222 3455666777776
No 354
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=36.69 E-value=1e+02 Score=37.67 Aligned_cols=52 Identities=13% Similarity=0.089 Sum_probs=38.0
Q ss_pred eEEecCCCchHH-HHHHHHH---HHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhc
Q 002515 19 IAEMKTGEGKTL-VSTLAAY---LNALTGEGVHVVTVNDYLAQRDAEWMERVHRFL 70 (913)
Q Consensus 19 IaEm~TGEGKTL-va~lpa~---l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~L 70 (913)
+..|.-|-|||- +|++..| ++.+.|.++.|+.+|..=|..-+..++......
T Consensus 90 fI~v~RkngKt~l~A~i~~~~~l~~~~~~~~~~i~A~s~~qa~~~F~~ar~mv~~~ 145 (546)
T COG4626 90 FIFIPRKNGKSTLAAGIMMTALLLNWRSGAGIYILAPSVEQAANSFNPARDMVKRD 145 (546)
T ss_pred EEEEecCCchHHHHHHHHHHHHHhhhhcCCcEEEEeccHHHHHHhhHHHHHHHHhC
Confidence 688999999984 5555554 345678899999999988887776666554433
No 355
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=36.47 E-value=81 Score=38.58 Aligned_cols=53 Identities=28% Similarity=0.221 Sum_probs=32.0
Q ss_pred cCCCchHHHHHHHHHHHHHc--CCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEE
Q 002515 23 KTGEGKTLVSTLAAYLNALT--GEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGL 76 (913)
Q Consensus 23 ~TGEGKTLva~lpa~l~AL~--G~~VhVvT~NdyLA~RDae~~~~~y~~LGLsv~~ 76 (913)
.||.|||-++...+...+.. |++|.+++...|=.- -.+++....+.+|+.+..
T Consensus 358 PtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRig-A~EQLk~ya~iLgv~v~~ 412 (559)
T PRK12727 358 PTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVG-GREQLHSYGRQLGIAVHE 412 (559)
T ss_pred CCCCCHHHHHHHHHHHHHHhcCCCceEEEeccccccc-HHHHHHHhhcccCceeEe
Confidence 49999997655544434454 578999987554221 124455455667776553
No 356
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=36.25 E-value=34 Score=36.64 Aligned_cols=57 Identities=19% Similarity=0.177 Sum_probs=36.2
Q ss_pred hhHHHHHHHHhcCC--eEEecCCCchHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHH
Q 002515 5 DVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWME 64 (913)
Q Consensus 5 dvQl~g~l~L~~G~--IaEm~TGEGKTLva~lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~ 64 (913)
|-.+-||+. .|. ++.-.+|.|||+.+.--++-.+..|.+|..||.- +-+.+-.+.|.
T Consensus 11 D~~l~GG~~--~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~e-e~~~~i~~~~~ 69 (237)
T TIGR03877 11 DEILHGGIP--ERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALE-EHPVQVRRNMA 69 (237)
T ss_pred HHHhcCCCc--CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEee-CCHHHHHHHHH
Confidence 333444433 455 6677899999997776666556679999998864 34433333333
No 357
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=35.89 E-value=40 Score=41.93 Aligned_cols=13 Identities=31% Similarity=0.590 Sum_probs=11.8
Q ss_pred CceEEEeecchhh
Q 002515 125 PFHFAIVDEVDSV 137 (913)
Q Consensus 125 ~~~~aIVDEvDsi 137 (913)
++.++||||||.|
T Consensus 119 ~~KV~IIDEah~L 131 (647)
T PRK07994 119 RFKVYLIDEVHML 131 (647)
T ss_pred CCEEEEEechHhC
Confidence 6889999999976
No 358
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=35.73 E-value=1.4e+02 Score=37.74 Aligned_cols=53 Identities=13% Similarity=-0.007 Sum_probs=41.7
Q ss_pred eEEecCCCchHHHHHHHHHHHHH-cCCcEEEEecCHHHHHHHHHHHHHHhhhcC
Q 002515 19 IAEMKTGEGKTLVSTLAAYLNAL-TGEGVHVVTVNDYLAQRDAEWMERVHRFLG 71 (913)
Q Consensus 19 IaEm~TGEGKTLva~lpa~l~AL-~G~~VhVvT~NdyLA~RDae~~~~~y~~LG 71 (913)
++.+.=|-|||-+..+.+...+. .|..|.+..++..-|+--++.+..+++.+|
T Consensus 191 V~taPRqrGKS~iVgi~l~~La~f~Gi~IlvTAH~~~ts~evF~rv~~~le~lg 244 (752)
T PHA03333 191 AATVPRRCGKTTIMAIILAAMISFLEIDIVVQAQRKTMCLTLYNRVETVVHAYQ 244 (752)
T ss_pred EEEeccCCCcHHHHHHHHHHHHHhcCCeEEEECCChhhHHHHHHHHHHHHHHhc
Confidence 88899999999765544332333 688888888888888888999999998776
No 359
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=35.65 E-value=46 Score=41.20 Aligned_cols=33 Identities=18% Similarity=0.304 Sum_probs=20.4
Q ss_pred chhhHHHHhhccchhhhhccCCCCceEEEeecchhh
Q 002515 102 LGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV 137 (913)
Q Consensus 102 ~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsi 137 (913)
.+.|-+|+-+..-....++. +..++||||||.|
T Consensus 101 ~~vd~IReii~~a~~~p~~~---~~KViIIDEad~L 133 (620)
T PRK14948 101 TGVDNIRELIERAQFAPVQA---RWKVYVIDECHML 133 (620)
T ss_pred CCHHHHHHHHHHHhhChhcC---CceEEEEECcccc
Confidence 45666776553211112333 6789999999986
No 360
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=35.27 E-value=29 Score=44.06 Aligned_cols=46 Identities=22% Similarity=0.312 Sum_probs=30.0
Q ss_pred HhccCCCeEEECCCcchhhHHHHhhccchhhhhccCCCCceEEEeecchhhhhccC
Q 002515 87 RSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEG 142 (913)
Q Consensus 87 ~~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea 142 (913)
...-.|||+++- +.||.|.......+..+ +-.++|+||||.|. |-+
T Consensus 218 ~l~edAdIIF~P-----YnYLiDp~iR~~~~v~L----knsIVIfDEAHNiE-dic 263 (945)
T KOG1132|consen 218 ELKEDADIIFCP-----YNYLIDPKIRRSHKVDL----KNSIVIFDEAHNIE-DIC 263 (945)
T ss_pred hhcccCcEEEec-----hhhhcCHhhhccccccc----cccEEEEeccccHH-HHH
Confidence 334456777765 55888876654333333 45799999999976 443
No 361
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=35.20 E-value=51 Score=32.27 Aligned_cols=34 Identities=29% Similarity=0.222 Sum_probs=24.9
Q ss_pred EEecCCCchHHHHHHHHHHHHHcCCcEEEEecCH
Q 002515 20 AEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVND 53 (913)
Q Consensus 20 aEm~TGEGKTLva~lpa~l~AL~G~~VhVvT~Nd 53 (913)
.-.+=|+|||.++.-.+...+..|+.|.++-.+.
T Consensus 5 ~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~ 38 (139)
T cd02038 5 TSGKGGVGKTNISANLALALAKLGKRVLLLDADL 38 (139)
T ss_pred EcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECCC
Confidence 3447799999766655555678899999887653
No 362
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=35.17 E-value=69 Score=34.64 Aligned_cols=112 Identities=20% Similarity=0.255 Sum_probs=61.4
Q ss_pred hcCC--eEEecCCCchHHHHHHHHHHHHHc-CCcEEEEec---CHHHHHHHHHHHHHHhhhcCCeEEEEcCC-CCHHHHH
Q 002515 15 HDGS--IAEMKTGEGKTLVSTLAAYLNALT-GEGVHVVTV---NDYLAQRDAEWMERVHRFLGLSVGLIQRG-MIPEERR 87 (913)
Q Consensus 15 ~~G~--IaEm~TGEGKTLva~lpa~l~AL~-G~~VhVvT~---NdyLA~RDae~~~~~y~~LGLsv~~i~~~-~~~~~r~ 87 (913)
..|. +.=..||-|||..+.=.|+-.|+. |..|..++. .+.++.|-.. ...|++...+..+ +++++..
T Consensus 17 ~~g~L~vi~a~pg~GKT~~~l~ia~~~a~~~~~~vly~SlEm~~~~l~~R~la------~~s~v~~~~i~~g~l~~~e~~ 90 (259)
T PF03796_consen 17 RPGELTVIAARPGVGKTAFALQIALNAALNGGYPVLYFSLEMSEEELAARLLA------RLSGVPYNKIRSGDLSDEEFE 90 (259)
T ss_dssp -TT-EEEEEESTTSSHHHHHHHHHHHHHHTTSSEEEEEESSS-HHHHHHHHHH------HHHTSTHHHHHCCGCHHHHHH
T ss_pred CcCcEEEEEecccCCchHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHH------HhhcchhhhhhccccCHHHHH
Confidence 3565 667889999998766666545565 467777665 2444444433 3345544333332 4444332
Q ss_pred hc-------cCCCeEEECCCcchhhHHHHhhccchhhhhccCCCCceEEEeecchhh
Q 002515 88 SN-------YRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV 137 (913)
Q Consensus 88 ~a-------Y~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsi 137 (913)
.. ....+.+.....+.++-|++.+..-... .. +++++|||=.+-|
T Consensus 91 ~~~~~~~~l~~~~l~i~~~~~~~~~~i~~~i~~~~~~--~~---~~~~v~IDyl~ll 142 (259)
T PF03796_consen 91 RLQAAAEKLSDLPLYIEDTPSLTIDDIESKIRRLKRE--GK---KVDVVFIDYLQLL 142 (259)
T ss_dssp HHHHHHHHHHTSEEEEEESSS-BHHHHHHHHHHHHHH--ST---TEEEEEEEEGGGS
T ss_pred HHHHHHHHHhhCcEEEECCCCCCHHHHHHHHHHHHhh--cc---CCCEEEechHHHh
Confidence 22 1234544444456777777765432111 13 7889999988754
No 363
>PRK03511 minC septum formation inhibitor; Reviewed
Probab=35.17 E-value=22 Score=38.58 Aligned_cols=45 Identities=36% Similarity=0.551 Sum_probs=40.4
Q ss_pred chhhhhcCceEEEeccCCCchhhHhhhhcc--cccCCCCCceeEEEeccchhhhhccC
Q 002515 551 GSEVKRLGGLHVIGTSLHESRRIDNQLRGR--AGRQGDPGSTRFMVSLQDEMFQKFSF 606 (913)
Q Consensus 551 ~~~V~~~GGL~VIgTerhes~RiD~QLrGR--agRQGdpGss~f~lSLeD~l~~~f~~ 606 (913)
..+|.+-|=.||.|+ |||| ||=+||+....|..+||=+++++-|.
T Consensus 151 GAEViA~GnI~V~G~-----------LrG~a~AG~~Gd~~A~Ifa~~l~aelvsIAg~ 197 (228)
T PRK03511 151 GAELIADGNIHVYGM-----------MRGRALAGASGDRECQIFCTHLMAELVSIAGQ 197 (228)
T ss_pred CCEEEeCCCEEEEEE-----------eccEEEecCCCCCccEEEeccCCccEEEEcCE
Confidence 568999999999998 6777 69999999999999999999998773
No 364
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=34.87 E-value=29 Score=38.61 Aligned_cols=45 Identities=16% Similarity=0.161 Sum_probs=26.9
Q ss_pred HHHhccCCCeEEECCCcchhhHHHHhhccchhhhhccCCCCceEEEeecchhhh
Q 002515 85 ERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (913)
Q Consensus 85 ~r~~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiL 138 (913)
.|..+-.|||+.++.+ ||.|..........+ +..++||||||.+-
T Consensus 205 ~r~~~~~Adivi~ny~-----yll~~~~r~~~~~~l----~~~~lIiDEAHnL~ 249 (289)
T smart00489 205 SRKAIEFANVVVLPYQ-----YLLDPKIRQALSIEL----KDSIVIFDEAHNLD 249 (289)
T ss_pred HHHHhhcCCEEEECHH-----HHhcHHHHHHhcccc----cccEEEEeCccChH
Confidence 3556677999987765 333322211101111 46899999999974
No 365
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=34.87 E-value=29 Score=38.61 Aligned_cols=45 Identities=16% Similarity=0.161 Sum_probs=26.9
Q ss_pred HHHhccCCCeEEECCCcchhhHHHHhhccchhhhhccCCCCceEEEeecchhhh
Q 002515 85 ERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (913)
Q Consensus 85 ~r~~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiL 138 (913)
.|..+-.|||+.++.+ ||.|..........+ +..++||||||.+-
T Consensus 205 ~r~~~~~Adivi~ny~-----yll~~~~r~~~~~~l----~~~~lIiDEAHnL~ 249 (289)
T smart00488 205 SRKAIEFANVVVLPYQ-----YLLDPKIRQALSIEL----KDSIVIFDEAHNLD 249 (289)
T ss_pred HHHHhhcCCEEEECHH-----HHhcHHHHHHhcccc----cccEEEEeCccChH
Confidence 3556677999987765 333322211101111 46899999999974
No 366
>PLN02229 alpha-galactosidase
Probab=34.71 E-value=1.9e+02 Score=34.36 Aligned_cols=118 Identities=10% Similarity=0.105 Sum_probs=69.9
Q ss_pred HHHHHHHhhccCcceEEECCeEEE--EeCCCCccccCc-ccChhhhHHHHhH------hCCcccCCceeeeeeeehhHHh
Q 002515 216 NALKAKEFYRRDVQYIVRNGKALI--INELTGRVEEKR-RWSEGIHQAVEAK------EGLKIQADSVVVAQITYQSLFK 286 (913)
Q Consensus 216 ~Al~A~~l~~~d~dYiV~dg~V~i--VD~~TGR~~~gr-~ws~GLHQaieaK------Egv~i~~e~~t~a~IT~q~~F~ 286 (913)
.++.+..+-.-+-+||+-|+.=.- -| ..|+++++. +|.+|+......- -|+-..+...|++
T Consensus 87 d~~v~~Gl~~~Gy~yv~iDDgW~~~~rd-~~G~l~~d~~rFP~G~k~ladyiH~~GlKfGIy~d~G~~TC~--------- 156 (427)
T PLN02229 87 DALVSTGLADLGYIHVNIDDCWSNLKRD-SKGQLVPDPKTFPSGIKLLADYVHSKGLKLGIYSDAGVFTCQ--------- 156 (427)
T ss_pred HHHHHhHHHhCCCEEEEEcCCcCCCCcC-CCCCEEEChhhcCCcHHHHHHHHHHCCCceEEeccCCCcccC---------
Confidence 344455666678899987642111 23 469999975 7999987755543 3455566666665
Q ss_pred hcCcccccCCCcccHHH--HHHHHhCCCeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHHHhcCCcEEEE-ec
Q 002515 287 LYPKLSGMTGTAKTEEK--EFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVG-ST 361 (913)
Q Consensus 287 ~Y~kL~GmTGTa~te~~--Ef~~iY~l~vv~IPt~~p~~R~d~~d~v~~t~~~k~~aii~ei~~~~~~grPVLI~-t~ 361 (913)
|..|+.+-|+. +...-.|+|++.+=---. +. ....+.+.++-+.+ .+.||||+.- |+
T Consensus 157 ------~~pGS~g~e~~DA~~fA~WGVDylK~D~C~~-------~~--~~~~~~y~~m~~AL---~~tGRpI~~SlC~ 216 (427)
T PLN02229 157 ------VRPGSLFHEVDDADIFASWGVDYLKYDNCYN-------LG--IKPIERYPPMRDAL---NATGRSIFYSLCE 216 (427)
T ss_pred ------CCCCCccHHHHHHHHHHHcCCCEEEecCCCC-------CC--cchhHHHHHHHHHH---HhhCCCcEEEecC
Confidence 56788876653 334568999887632100 00 01234455544443 3689997765 44
No 367
>PRK01973 septum formation inhibitor; Reviewed
Probab=34.62 E-value=23 Score=39.47 Aligned_cols=44 Identities=34% Similarity=0.586 Sum_probs=39.2
Q ss_pred chhhhhcCceEEEeccCCCchhhHhhhhcc--cccCCCCCceeEEEeccchhhhhcc
Q 002515 551 GSEVKRLGGLHVIGTSLHESRRIDNQLRGR--AGRQGDPGSTRFMVSLQDEMFQKFS 605 (913)
Q Consensus 551 ~~~V~~~GGL~VIgTerhes~RiD~QLrGR--agRQGdpGss~f~lSLeD~l~~~f~ 605 (913)
+.+|..-|=.||.|+ |||| ||-+||.....|..+||=+|+++-|
T Consensus 191 GAEviA~GnI~V~G~-----------lrGra~AG~~Gd~~A~If~~~l~aelvsIAg 236 (271)
T PRK01973 191 GAEVIAEGNIHIYAP-----------LRGRALAGVHGNHDARIFCTCLEPELISIAG 236 (271)
T ss_pred CCEEEeCCCEEEEEE-----------eccEEEecCCCCCccEEEeccCCCcEEEECc
Confidence 568889999999997 5565 7999999999999999999999876
No 368
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=34.52 E-value=43 Score=41.51 Aligned_cols=14 Identities=29% Similarity=0.508 Sum_probs=12.3
Q ss_pred CceEEEeecchhhh
Q 002515 125 PFHFAIVDEVDSVL 138 (913)
Q Consensus 125 ~~~~aIVDEvDsiL 138 (913)
++.++||||||.|-
T Consensus 124 ~~KV~IIDEvh~Ls 137 (618)
T PRK14951 124 RFKVFMIDEVHMLT 137 (618)
T ss_pred CceEEEEEChhhCC
Confidence 68999999999864
No 369
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=34.43 E-value=49 Score=40.74 Aligned_cols=14 Identities=36% Similarity=0.487 Sum_probs=12.3
Q ss_pred CceEEEeecchhhh
Q 002515 125 PFHFAIVDEVDSVL 138 (913)
Q Consensus 125 ~~~~aIVDEvDsiL 138 (913)
++.++||||||.|-
T Consensus 118 ~~KVvIIDEah~Lt 131 (584)
T PRK14952 118 RYRIFIVDEAHMVT 131 (584)
T ss_pred CceEEEEECCCcCC
Confidence 78899999999873
No 370
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=34.02 E-value=56 Score=36.17 Aligned_cols=13 Identities=31% Similarity=0.383 Sum_probs=11.2
Q ss_pred CceEEEeecchhh
Q 002515 125 PFHFAIVDEVDSV 137 (913)
Q Consensus 125 ~~~~aIVDEvDsi 137 (913)
+..++||||||.+
T Consensus 100 ~~~vliiDe~d~l 112 (316)
T PHA02544 100 GGKVIIIDEFDRL 112 (316)
T ss_pred CCeEEEEECcccc
Confidence 5689999999976
No 371
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=33.61 E-value=2.8e+02 Score=34.95 Aligned_cols=63 Identities=17% Similarity=0.137 Sum_probs=40.8
Q ss_pred chhHHHHHHH----HhcCC--eEEecCCCchHHHHHHHHHHHHH-cC--CcEEEEecCHHHHHHHHHHHHHH
Q 002515 4 FDVQIIGGAV----LHDGS--IAEMKTGEGKTLVSTLAAYLNAL-TG--EGVHVVTVNDYLAQRDAEWMERV 66 (913)
Q Consensus 4 ~dvQl~g~l~----L~~G~--IaEm~TGEGKTLva~lpa~l~AL-~G--~~VhVvT~NdyLA~RDae~~~~~ 66 (913)
||.|..-+-. |-+|. ++|+.||.|||++.+.|+.-.+. .+ .+|..+|.+-.=-.+-.++++.+
T Consensus 12 y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~~~~kIiy~sRThsQl~q~i~Elk~~ 83 (705)
T TIGR00604 12 YPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKPEVRKIIYASRTHSQLEQATEELRKL 83 (705)
T ss_pred CHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhccccccEEEEcccchHHHHHHHHHHhh
Confidence 7778765543 33444 99999999999988888863333 23 35666666655555555555553
No 372
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=33.44 E-value=1.2e+02 Score=31.58 Aligned_cols=54 Identities=26% Similarity=0.342 Sum_probs=31.5
Q ss_pred cCCeEEe--cCCCchHHHHHHHHHHHHHcC------CcEEEEecCHHHHHHHHHHHHHHhhhcCC
Q 002515 16 DGSIAEM--KTGEGKTLVSTLAAYLNALTG------EGVHVVTVNDYLAQRDAEWMERVHRFLGL 72 (913)
Q Consensus 16 ~G~IaEm--~TGEGKTLva~lpa~l~AL~G------~~VhVvT~NdyLA~RDae~~~~~y~~LGL 72 (913)
.|.+.++ .+|.|||..+...++..+..| .+|..++..+-+ +.+.+..+...++.
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~---~~~rl~~~~~~~~~ 79 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAF---RPERLVQLAVRFGL 79 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCC---CHHHHHHHHHHhcc
Confidence 5676555 689999987777666445565 566655554321 13344444444443
No 373
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=33.37 E-value=75 Score=29.74 Aligned_cols=38 Identities=26% Similarity=0.433 Sum_probs=29.6
Q ss_pred HHHHHHHHhcCCcEEEEecchhhH-HHHHHHHHHCCCCe
Q 002515 343 RQEVESMFRLGRPVLVGSTSVENS-EYLSDLLKQQGIPH 380 (913)
Q Consensus 343 i~ei~~~~~~grPVLI~t~Si~~S-E~ls~~L~~~gi~~ 380 (913)
.+-+....+.|.|+.+.|++-..+ +.+++.|+..|++.
T Consensus 20 ~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L~~~Gi~~ 58 (101)
T PF13344_consen 20 VEALDALRERGKPVVFLTNNSSRSREEYAKKLKKLGIPV 58 (101)
T ss_dssp HHHHHHHHHTTSEEEEEES-SSS-HHHHHHHHHHTTTT-
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHhcCcCC
Confidence 455556667899999999998777 89999999999874
No 374
>PHA02542 41 41 helicase; Provisional
Probab=33.06 E-value=64 Score=38.69 Aligned_cols=45 Identities=18% Similarity=0.105 Sum_probs=30.6
Q ss_pred hcCC--eEEecCCCchHHHHHHHHHHHHHcCCcEEEEe---cCHHHHHHH
Q 002515 15 HDGS--IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVT---VNDYLAQRD 59 (913)
Q Consensus 15 ~~G~--IaEm~TGEGKTLva~lpa~l~AL~G~~VhVvT---~NdyLA~RD 59 (913)
+.|. |.-..+|.|||..++--|.-.|-.|++|.+++ +.+.|+.|-
T Consensus 188 ~~G~LiiIaarPgmGKTtfalniA~~~a~~g~~Vl~fSLEM~~~ql~~Rl 237 (473)
T PHA02542 188 ERKTLNVLLAGVNVGKSLGLCSLAADYLQQGYNVLYISMEMAEEVIAKRI 237 (473)
T ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEEeccCCHHHHHHHH
Confidence 3454 56688999999876655554456788898876 445555544
No 375
>PRK14873 primosome assembly protein PriA; Provisional
Probab=33.02 E-value=1.8e+02 Score=36.63 Aligned_cols=76 Identities=21% Similarity=0.162 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHC-C-CCeEEeccCCcchhhHHH-HHHhcCCCccEEEEcCCC
Q 002515 337 GKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQ-G-IPHNVLNARPKYAAREAE-TVAQAGRKYAITISTNMA 413 (913)
Q Consensus 337 ~k~~aii~ei~~~~~~grPVLI~t~Si~~SE~ls~~L~~~-g-i~~~vLnA~~k~~~~Ea~-Iia~AG~~G~VTIATnmA 413 (913)
.|-+..++-+.+..+.|+.|||.++.+.....+.+.|+++ | -++.++|++....++-.. .-...| ...|.|-|..|
T Consensus 172 GKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G-~~~IViGtRSA 250 (665)
T PRK14873 172 DWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRG-QARVVVGTRSA 250 (665)
T ss_pred cHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCC-CCcEEEEccee
Confidence 4556666677777789999999999999999999999875 3 678899996433344333 233556 33577777654
No 376
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=32.98 E-value=86 Score=33.01 Aligned_cols=35 Identities=23% Similarity=0.290 Sum_probs=25.1
Q ss_pred eEEecCCCchHHHHHHHHHHHHHcCCcEEEEecCH
Q 002515 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVND 53 (913)
Q Consensus 19 IaEm~TGEGKTLva~lpa~l~AL~G~~VhVvT~Nd 53 (913)
+..-.+|.|||..+.--++-.+..|+.|..+|...
T Consensus 20 li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~ 54 (224)
T TIGR03880 20 VVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEE 54 (224)
T ss_pred EEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 44556899999865555553456799999888865
No 377
>PRK11519 tyrosine kinase; Provisional
Probab=32.95 E-value=40 Score=42.39 Aligned_cols=32 Identities=22% Similarity=0.244 Sum_probs=26.3
Q ss_pred EecCCCchHHHHHHHHHHHHHcCCcEEEEecC
Q 002515 21 EMKTGEGKTLVSTLAAYLNALTGEGVHVVTVN 52 (913)
Q Consensus 21 Em~TGEGKTLva~lpa~l~AL~G~~VhVvT~N 52 (913)
-..-|||||.+++-.|...|..|++|.+|-.+
T Consensus 533 s~~~geGKTt~a~nLA~~la~~g~rvLlID~D 564 (719)
T PRK11519 533 GVSPSIGKTFVCANLAAVISQTNKRVLLIDCD 564 (719)
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCcEEEEeCC
Confidence 33569999998887787789999999999663
No 378
>PRK07667 uridine kinase; Provisional
Probab=32.87 E-value=52 Score=34.17 Aligned_cols=38 Identities=26% Similarity=0.503 Sum_probs=27.4
Q ss_pred EecCCCchHH-HHHHHHHHHHHcCCcEEEEecCHHHHHHH
Q 002515 21 EMKTGEGKTL-VSTLAAYLNALTGEGVHVVTVNDYLAQRD 59 (913)
Q Consensus 21 Em~TGEGKTL-va~lpa~l~AL~G~~VhVvT~NdyLA~RD 59 (913)
.=.+|+|||. +-.|...+ .-.|.+|.+++.-+|+..+.
T Consensus 23 ~G~~gsGKStla~~L~~~l-~~~~~~~~~i~~Dd~~~~~~ 61 (193)
T PRK07667 23 DGLSRSGKTTFVANLKENM-KQEGIPFHIFHIDDYIVERN 61 (193)
T ss_pred ECCCCCCHHHHHHHHHHHH-HhCCCcEEEEEcCcccchhh
Confidence 3468999986 55555554 34688999999999876543
No 379
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=32.81 E-value=56 Score=36.66 Aligned_cols=70 Identities=24% Similarity=0.437 Sum_probs=41.0
Q ss_pred ccccCCCcccH-HHHHHHHhCCCeE-----------EeCCCCCccc----cc-------CCCeEEeChhHHHHHHHHHHH
Q 002515 291 LSGMTGTAKTE-EKEFLKMFQMPVI-----------EVPTNLPNIR----VD-------LPIQSFATARGKWEYARQEVE 347 (913)
Q Consensus 291 L~GmTGTa~te-~~Ef~~iY~l~vv-----------~IPt~~p~~R----~d-------~~d~v~~t~~~k~~aii~ei~ 347 (913)
++|.||+.+|. +.++.+.++..++ .|=|++|..- .. .|...| +..+......+.|.
T Consensus 4 i~G~t~~GKs~la~~l~~~~~~~iis~Ds~qvY~~l~IgTakp~~~e~~~v~hhlid~~~~~~~~-~v~~f~~~a~~~i~ 82 (287)
T TIGR00174 4 IMGPTAVGKSQLAIQLAKKLNAEIISVDSMQIYKGMDIGTAKPSLQEREGIPHHLIDILDPSESY-SAADFQTLALNAIA 82 (287)
T ss_pred EECCCCCCHHHHHHHHHHhCCCcEEEechhheeeeccccCCCCCHHHHcCccEEEEEEechhheE-cHHHHHHHHHHHHH
Confidence 68999999985 5667777775543 4456777631 11 122222 33333344455566
Q ss_pred HHHhcCC-cEEEEec
Q 002515 348 SMFRLGR-PVLVGST 361 (913)
Q Consensus 348 ~~~~~gr-PVLI~t~ 361 (913)
+.++.|+ |||||-+
T Consensus 83 ~~~~~g~~pi~vGGT 97 (287)
T TIGR00174 83 DITARGKIPLLVGGT 97 (287)
T ss_pred HHHhCCCCEEEEcCc
Confidence 6666665 8888754
No 380
>PRK06526 transposase; Provisional
Probab=32.66 E-value=31 Score=37.78 Aligned_cols=37 Identities=19% Similarity=0.193 Sum_probs=24.7
Q ss_pred eEEecCCCchHHHHHHHHHHHHHcCCcEEEEecCHHH
Q 002515 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYL 55 (913)
Q Consensus 19 IaEm~TGEGKTLva~lpa~l~AL~G~~VhVvT~NdyL 55 (913)
+.-=.+|.|||-.+.-.+.-.+-.|+.|..+|.++-+
T Consensus 102 ll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~ 138 (254)
T PRK06526 102 VFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWV 138 (254)
T ss_pred EEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHH
Confidence 5666899999965444443334578888887776533
No 381
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=32.35 E-value=87 Score=29.15 Aligned_cols=88 Identities=15% Similarity=0.191 Sum_probs=51.3
Q ss_pred cccccCCCcccHHHHHHHHhCCCeEEeCCCCCcccccCCCeEEe-ChhHHHHHHHHHHHHHHhcCCcEEEE---ecchhh
Q 002515 290 KLSGMTGTAKTEEKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFA-TARGKWEYARQEVESMFRLGRPVLVG---STSVEN 365 (913)
Q Consensus 290 kL~GmTGTa~te~~Ef~~iY~l~vv~IPt~~p~~R~d~~d~v~~-t~~~k~~aii~ei~~~~~~grPVLI~---t~Si~~ 365 (913)
.+.|+...-....+.+.+.|+.+ ...+.........+|.++. |.......++.. +.+.|.+|++= +.|.++
T Consensus 27 ~v~~v~d~~~~~~~~~~~~~~~~--~~~~~~~ll~~~~~D~V~I~tp~~~h~~~~~~---~l~~g~~v~~EKP~~~~~~~ 101 (120)
T PF01408_consen 27 EVVAVCDPDPERAEAFAEKYGIP--VYTDLEELLADEDVDAVIIATPPSSHAEIAKK---ALEAGKHVLVEKPLALTLEE 101 (120)
T ss_dssp EEEEEECSSHHHHHHHHHHTTSE--EESSHHHHHHHTTESEEEEESSGGGHHHHHHH---HHHTTSEEEEESSSSSSHHH
T ss_pred EEEEEEeCCHHHHHHHHHHhccc--chhHHHHHHHhhcCCEEEEecCCcchHHHHHH---HHHcCCEEEEEcCCcCCHHH
Confidence 34555555444556677777777 3333322333334565553 334344444433 34577788885 668888
Q ss_pred HHHHHHHHHHCCCCeEE
Q 002515 366 SEYLSDLLKQQGIPHNV 382 (913)
Q Consensus 366 SE~ls~~L~~~gi~~~v 382 (913)
++.+.+..++.|....|
T Consensus 102 ~~~l~~~a~~~~~~~~V 118 (120)
T PF01408_consen 102 AEELVEAAKEKGVKVMV 118 (120)
T ss_dssp HHHHHHHHHHHTSCEEE
T ss_pred HHHHHHHHHHhCCEEEE
Confidence 88888888888876544
No 382
>PRK09183 transposase/IS protein; Provisional
Probab=32.24 E-value=55 Score=35.87 Aligned_cols=36 Identities=25% Similarity=0.271 Sum_probs=23.8
Q ss_pred eEEecCCCchHHHHHHHHHHHHHcCCcEEEEecCHH
Q 002515 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDY 54 (913)
Q Consensus 19 IaEm~TGEGKTLva~lpa~l~AL~G~~VhVvT~Ndy 54 (913)
+.-=.+|.|||..+...+......|..|..++.++.
T Consensus 106 ~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l 141 (259)
T PRK09183 106 VLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADL 141 (259)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHH
Confidence 334479999996554445444567888887775543
No 383
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=31.52 E-value=1.3e+02 Score=29.15 Aligned_cols=108 Identities=13% Similarity=0.193 Sum_probs=61.2
Q ss_pred ccccCCCcccHH-HHHHHHhCCCeEE--eCCCCCccccc---------CCCeEEeChhHHHHHHHHHHHHHHhcCCcEEE
Q 002515 291 LSGMTGTAKTEE-KEFLKMFQMPVIE--VPTNLPNIRVD---------LPIQSFATARGKWEYARQEVESMFRLGRPVLV 358 (913)
Q Consensus 291 L~GmTGTa~te~-~Ef~~iY~l~vv~--IPt~~p~~R~d---------~~d~v~~t~~~k~~aii~ei~~~~~~grPVLI 358 (913)
+.|.||-.|..- +.+.+..++.++- .+...+..-+| .+..++.+ +.++++. -=|+|
T Consensus 5 i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~----l~~~~~~--------~DVvI 72 (124)
T PF01113_consen 5 IVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDD----LEELLEE--------ADVVI 72 (124)
T ss_dssp EETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-----HHHHTTH---------SEEE
T ss_pred EECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccchh----HHHhccc--------CCEEE
Confidence 567888888754 5566667777542 23332222222 22223322 2222222 23788
Q ss_pred EecchhhHHHHHHHHHHCCCCeEEeccCCcchhhHHHHHHhcCCCccEEEEcCC
Q 002515 359 GSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQAGRKYAITISTNM 412 (913)
Q Consensus 359 ~t~Si~~SE~ls~~L~~~gi~~~vLnA~~k~~~~Ea~Iia~AG~~G~VTIATnm 412 (913)
=+++.+.+....+.+.++|+|..+=+.+ ..+.+.+.+.++.+.-.|.+|.||
T Consensus 73 DfT~p~~~~~~~~~~~~~g~~~ViGTTG--~~~~~~~~l~~~a~~~~vl~a~Nf 124 (124)
T PF01113_consen 73 DFTNPDAVYDNLEYALKHGVPLVIGTTG--FSDEQIDELEELAKKIPVLIAPNF 124 (124)
T ss_dssp EES-HHHHHHHHHHHHHHT-EEEEE-SS--SHHHHHHHHHHHTTTSEEEE-SSS
T ss_pred EcCChHHhHHHHHHHHhCCCCEEEECCC--CCHHHHHHHHHHhccCCEEEeCCC
Confidence 7888988888888888889887664443 344454666666667899999998
No 384
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=31.08 E-value=1.7e+02 Score=33.69 Aligned_cols=90 Identities=14% Similarity=0.277 Sum_probs=54.9
Q ss_pred CchhHHHHHHH-Hh--cCC-----eEEecCCCchHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHH-HHHHHHhhhcCCe
Q 002515 3 HFDVQIIGGAV-LH--DGS-----IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDA-EWMERVHRFLGLS 73 (913)
Q Consensus 3 p~dvQl~g~l~-L~--~G~-----IaEm~TGEGKTLva~lpa~l~AL~G~~VhVvT~NdyLA~RDa-e~~~~~y~~LGLs 73 (913)
-+|+|.++=+. +. .|. |+=+ |-+|+-|+-=.+.+.+..|-.|.+++|-.|.-..+. +....+++..|.+
T Consensus 134 ~HPtQaLaDl~Ti~e~~g~l~g~~va~v--Gd~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~ 211 (331)
T PRK02102 134 WHPTQMLADFMTMKEHFGPLKGLKLAYV--GDGRNNMANSLMVGGAKLGMDVRICAPKELWPEEELVALAREIAKETGAK 211 (331)
T ss_pred CChHHHHHHHHHHHHHhCCCCCCEEEEE--CCCcccHHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHHHHHcCCe
Confidence 47999988763 32 242 5544 777654433233344667899999999888654332 3345566777877
Q ss_pred EEEEcCCCCHHHHHhccCCCeEEECC
Q 002515 74 VGLIQRGMIPEERRSNYRCDITYTNN 99 (913)
Q Consensus 74 v~~i~~~~~~~~r~~aY~~DI~YgT~ 99 (913)
+.+. .+ + ....-+|||+|...
T Consensus 212 ~~~~-~d--~--~ea~~~aDvvyt~~ 232 (331)
T PRK02102 212 ITIT-ED--P--EEAVKGADVIYTDV 232 (331)
T ss_pred EEEE-cC--H--HHHhCCCCEEEEcC
Confidence 6542 22 2 22344799999963
No 385
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=31.08 E-value=1.1e+02 Score=35.57 Aligned_cols=22 Identities=27% Similarity=0.323 Sum_probs=15.9
Q ss_pred eEEecCCCchHH-HHHHHHHHHH
Q 002515 19 IAEMKTGEGKTL-VSTLAAYLNA 40 (913)
Q Consensus 19 IaEm~TGEGKTL-va~lpa~l~A 40 (913)
|..-..|.||+. +..++-++++
T Consensus 45 Lf~Gp~G~GK~~lA~~~A~~Llc 67 (365)
T PRK07471 45 LIGGPQGIGKATLAYRMARFLLA 67 (365)
T ss_pred EEECCCCCCHHHHHHHHHHHHhC
Confidence 677889999975 5666666543
No 386
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=30.96 E-value=98 Score=35.96 Aligned_cols=49 Identities=22% Similarity=0.306 Sum_probs=42.4
Q ss_pred CeEEecCCCchHHHHHHHHHHHHHc-----CCcEEEEecCHHHHHHHHHHHHHHh
Q 002515 18 SIAEMKTGEGKTLVSTLAAYLNALT-----GEGVHVVTVNDYLAQRDAEWMERVH 67 (913)
Q Consensus 18 ~IaEm~TGEGKTLva~lpa~l~AL~-----G~~VhVvT~NdyLA~RDae~~~~~y 67 (913)
.|+||.-|.| ||+.-|..++..|. .-.+++|-+|++|++|..+.++.+-
T Consensus 80 ~lvEiGaG~G-~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~~ 133 (370)
T COG1565 80 KLVEIGAGRG-TLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKATE 133 (370)
T ss_pred eEEEeCCCcC-hHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhccc
Confidence 3999999999 78888888877774 6799999999999999999888764
No 387
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=30.94 E-value=44 Score=42.10 Aligned_cols=32 Identities=25% Similarity=0.284 Sum_probs=25.0
Q ss_pred EecCCCchHHHHHHHHHHHHHcCCcEEEEecC
Q 002515 21 EMKTGEGKTLVSTLAAYLNALTGEGVHVVTVN 52 (913)
Q Consensus 21 Em~TGEGKTLva~lpa~l~AL~G~~VhVvT~N 52 (913)
--.-|||||.+++-.|...|..|++|.+|=.+
T Consensus 538 S~~~g~GKTtva~nLA~~la~~G~rVLlID~D 569 (726)
T PRK09841 538 GATPDSGKTFVSSTLAAVIAQSDQKVLFIDAD 569 (726)
T ss_pred cCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 33559999987776666679999999988654
No 388
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=30.81 E-value=54 Score=39.64 Aligned_cols=14 Identities=29% Similarity=0.498 Sum_probs=12.2
Q ss_pred CceEEEeecchhhh
Q 002515 125 PFHFAIVDEVDSVL 138 (913)
Q Consensus 125 ~~~~aIVDEvDsiL 138 (913)
++.++||||||.|-
T Consensus 119 ~~kV~iIDE~~~ls 132 (509)
T PRK14958 119 RFKVYLIDEVHMLS 132 (509)
T ss_pred CcEEEEEEChHhcC
Confidence 68899999999863
No 389
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=30.57 E-value=2.2e+02 Score=32.44 Aligned_cols=57 Identities=9% Similarity=0.184 Sum_probs=34.6
Q ss_pred CeEEECC----CcchhhHHHHhhccchhhhhccCCCCceEEEeecchhhhhccCCCceeccCCCCCCccchHHHHHHHHH
Q 002515 93 DITYTNN----SELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAEL 168 (913)
Q Consensus 93 DI~YgT~----~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~tPLiiSg~~~~~~~~y~~~~~~v~~ 168 (913)
|+.+..+ ...+.|-.|+-...-....... +..++|||+||.|-. ..++.+.+.
T Consensus 75 D~~~i~p~~~~~~I~vdqiR~l~~~~~~~~~~~---~~kV~iI~~ae~m~~--------------------~AaNaLLKt 131 (319)
T PRK06090 75 DLHVIKPEKEGKSITVEQIRQCNRLAQESSQLN---GYRLFVIEPADAMNE--------------------SASNALLKT 131 (319)
T ss_pred CEEEEecCcCCCcCCHHHHHHHHHHHhhCcccC---CceEEEecchhhhCH--------------------HHHHHHHHH
Confidence 6655543 2466676765321110111223 689999999999842 357788888
Q ss_pred hccC
Q 002515 169 LVQG 172 (913)
Q Consensus 169 l~~~ 172 (913)
|+++
T Consensus 132 LEEP 135 (319)
T PRK06090 132 LEEP 135 (319)
T ss_pred hcCC
Confidence 8764
No 390
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=30.43 E-value=88 Score=37.84 Aligned_cols=13 Identities=23% Similarity=0.220 Sum_probs=11.3
Q ss_pred CceEEEeecchhh
Q 002515 125 PFHFAIVDEVDSV 137 (913)
Q Consensus 125 ~~~~aIVDEvDsi 137 (913)
+..++||||+|.+
T Consensus 116 ~~kVVIIDEad~l 128 (504)
T PRK14963 116 GRKVYILDEAHMM 128 (504)
T ss_pred CCeEEEEECcccc
Confidence 6789999999965
No 391
>PRK00030 minC septum formation inhibitor; Provisional
Probab=30.36 E-value=29 Score=38.99 Aligned_cols=44 Identities=39% Similarity=0.653 Sum_probs=38.9
Q ss_pred chhhhhcCceEEEeccCCCchhhHhhhhcc--cccCCCCCceeEEEeccchhhhhcc
Q 002515 551 GSEVKRLGGLHVIGTSLHESRRIDNQLRGR--AGRQGDPGSTRFMVSLQDEMFQKFS 605 (913)
Q Consensus 551 ~~~V~~~GGL~VIgTerhes~RiD~QLrGR--agRQGdpGss~f~lSLeD~l~~~f~ 605 (913)
+.+|..-|=.||.|+ |||| ||-+||.....|..+|+=+|+++-|
T Consensus 213 GAEViAdGnIhVyG~-----------LrGra~AG~~Gd~~A~If~~~l~aelvsIAg 258 (292)
T PRK00030 213 GAEVIADGNVHVYGP-----------LRGKAMAGARGDTSARIFTTQLDAELLAVAG 258 (292)
T ss_pred CCEEEeCCCEEEEEE-----------cccEEEecCCCCCccEEEeccCCceEEEEcc
Confidence 467888899999997 6676 7999999999999999999999876
No 392
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=30.03 E-value=73 Score=33.70 Aligned_cols=37 Identities=24% Similarity=0.218 Sum_probs=26.3
Q ss_pred hcCC--eEEecCCCchHHHHHHHHHHHHHc-CCcEEEEec
Q 002515 15 HDGS--IAEMKTGEGKTLVSTLAAYLNALT-GEGVHVVTV 51 (913)
Q Consensus 15 ~~G~--IaEm~TGEGKTLva~lpa~l~AL~-G~~VhVvT~ 51 (913)
..|. +.--.||.|||..+.-.++-.+.. |.+|..++.
T Consensus 11 ~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~ 50 (242)
T cd00984 11 QPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSL 50 (242)
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeC
Confidence 4676 667789999997666555545566 777777774
No 393
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=30.02 E-value=1e+02 Score=32.53 Aligned_cols=37 Identities=30% Similarity=0.312 Sum_probs=25.2
Q ss_pred hcCC--eEEecCCCchHHHHHHHHHHHHHcCCcEEEEec
Q 002515 15 HDGS--IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTV 51 (913)
Q Consensus 15 ~~G~--IaEm~TGEGKTLva~lpa~l~AL~G~~VhVvT~ 51 (913)
..|. +..-.+|.|||..+.--++-.+..|.+|..++.
T Consensus 18 ~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~ 56 (229)
T TIGR03881 18 PRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTT 56 (229)
T ss_pred cCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEc
Confidence 3555 456689999997665444433467888887776
No 394
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=29.74 E-value=48 Score=41.71 Aligned_cols=34 Identities=21% Similarity=0.172 Sum_probs=28.2
Q ss_pred eEEecCCCchHHHHHHHHHHHHHcCCcEEEEecC
Q 002515 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVN 52 (913)
Q Consensus 19 IaEm~TGEGKTLva~lpa~l~AL~G~~VhVvT~N 52 (913)
|.-.+-|||||.+++-.|+..|..|++|.+|-.+
T Consensus 551 vts~~~G~GKTt~a~nLA~~lA~~g~rvLlID~D 584 (754)
T TIGR01005 551 TQRPRPVLGKSDIEANAAALIASGGKRALLIDAD 584 (754)
T ss_pred eecCCCCCChhHHHHHHHHHHHhCCCeEEEEeCC
Confidence 5666789999998777777788999999999664
No 395
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=29.66 E-value=71 Score=39.53 Aligned_cols=42 Identities=19% Similarity=0.243 Sum_probs=22.2
Q ss_pred CeEEECCC-cchhhHHHHhhccchhhhhccCCCCceEEEeecchhh
Q 002515 93 DITYTNNS-ELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV 137 (913)
Q Consensus 93 DI~YgT~~-e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsi 137 (913)
|+....++ ..+.|-+|+-...-....... +..++||||||.|
T Consensus 89 DiieIdaas~igVd~IReIi~~~~~~P~~~---~~KVIIIDEad~L 131 (605)
T PRK05896 89 DIVELDAASNNGVDEIRNIIDNINYLPTTF---KYKVYIIDEAHML 131 (605)
T ss_pred ceEEeccccccCHHHHHHHHHHHHhchhhC---CcEEEEEechHhC
Confidence 44444432 356666665332111111222 4678999999976
No 396
>PRK08939 primosomal protein DnaI; Reviewed
Probab=29.42 E-value=65 Score=36.38 Aligned_cols=38 Identities=18% Similarity=0.271 Sum_probs=25.6
Q ss_pred CCeEEecCCCchHHH-HHHHHHHHHHcCCcEEEEecCHHH
Q 002515 17 GSIAEMKTGEGKTLV-STLAAYLNALTGEGVHVVTVNDYL 55 (913)
Q Consensus 17 G~IaEm~TGEGKTLv-a~lpa~l~AL~G~~VhVvT~NdyL 55 (913)
|-+.-=.+|.|||-. .+++-. .+-.|..|-+++..+.+
T Consensus 158 gl~L~G~~G~GKThLa~Aia~~-l~~~g~~v~~~~~~~l~ 196 (306)
T PRK08939 158 GLYLYGDFGVGKSYLLAAIANE-LAKKGVSSTLLHFPEFI 196 (306)
T ss_pred eEEEECCCCCCHHHHHHHHHHH-HHHcCCCEEEEEHHHHH
Confidence 446666899999964 444433 34668889888886543
No 397
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=29.15 E-value=3e+02 Score=32.95 Aligned_cols=38 Identities=24% Similarity=0.149 Sum_probs=26.4
Q ss_pred cCC--eEEecCCCchHHHHHHHHHHHHHcCCcEEEEecCH
Q 002515 16 DGS--IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVND 53 (913)
Q Consensus 16 ~G~--IaEm~TGEGKTLva~lpa~l~AL~G~~VhVvT~Nd 53 (913)
.|. +.-=.+|.|||..+...++-.+-.|.+|..++.-+
T Consensus 93 ~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EE 132 (454)
T TIGR00416 93 PGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEE 132 (454)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcC
Confidence 455 44456899999877766665566677887777644
No 398
>PRK04804 minC septum formation inhibitor; Reviewed
Probab=28.96 E-value=32 Score=37.00 Aligned_cols=44 Identities=41% Similarity=0.613 Sum_probs=39.5
Q ss_pred chhhhhcCceEEEeccCCCchhhHhhhhcc--cccCCCCCceeEEEeccchhhhhcc
Q 002515 551 GSEVKRLGGLHVIGTSLHESRRIDNQLRGR--AGRQGDPGSTRFMVSLQDEMFQKFS 605 (913)
Q Consensus 551 ~~~V~~~GGL~VIgTerhes~RiD~QLrGR--agRQGdpGss~f~lSLeD~l~~~f~ 605 (913)
..+|.+-|=.||.|+ |||| ||=.||+....|-++||=+++++-|
T Consensus 143 GAEViA~GnI~V~G~-----------LrG~a~AG~~Gd~~A~I~a~~l~~elv~Iag 188 (221)
T PRK04804 143 GAEVIADGSIHIYGT-----------LRGRAIAGASGDKEAVIICHSLEAELVSIAG 188 (221)
T ss_pred CCEEEeCCCEEEEEE-----------eccEEEecCCCCCccEEEeccCCccEEEECC
Confidence 468889999999997 6676 6999999999999999999999876
No 399
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=28.92 E-value=2.5e+02 Score=32.30 Aligned_cols=88 Identities=19% Similarity=0.214 Sum_probs=53.7
Q ss_pred CchhHHHHHHH-H--hc------C-CeEEecCCCchH--HHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHH-HHHHhhh
Q 002515 3 HFDVQIIGGAV-L--HD------G-SIAEMKTGEGKT--LVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEW-MERVHRF 69 (913)
Q Consensus 3 p~dvQl~g~l~-L--~~------G-~IaEm~TGEGKT--Lva~lpa~l~AL~G~~VhVvT~NdyLA~RDae~-~~~~y~~ 69 (913)
-+|+|.++=+. + +. | +|+=+ |-+|. .-..+.+ .+..|-.|.+++|..|....+.-+ ...+...
T Consensus 133 ~HPtQaLaDl~Ti~e~~g~~~l~g~~ia~v--GD~~~~v~~Sl~~~--~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~ 208 (336)
T PRK03515 133 FHPTQLLADLLTMQEHLPGKAFNEMTLAYA--GDARNNMGNSLLEA--AALTGLDLRLVAPKACWPEAALVTECRALAQK 208 (336)
T ss_pred CChHHHHHHHHHHHHHhCCCCcCCCEEEEe--CCCcCcHHHHHHHH--HHHcCCEEEEECCchhcCcHHHHHHHHHHHHH
Confidence 47999988763 2 12 2 25555 55554 3233333 356699999999999876655432 3355666
Q ss_pred cCCeEEEEcCCCCHHHHHhccCCCeEEECC
Q 002515 70 LGLSVGLIQRGMIPEERRSNYRCDITYTNN 99 (913)
Q Consensus 70 LGLsv~~i~~~~~~~~r~~aY~~DI~YgT~ 99 (913)
-|.++.+.. + + ....-+|||+|++.
T Consensus 209 ~g~~i~~~~-d--~--~ea~~~aDvvytd~ 233 (336)
T PRK03515 209 NGGNITLTE-D--I--AEGVKGADFIYTDV 233 (336)
T ss_pred cCCeEEEEc-C--H--HHHhCCCCEEEecC
Confidence 787765432 2 2 22344799999983
No 400
>PRK10876 recB exonuclease V subunit beta; Provisional
Probab=28.69 E-value=1.2e+02 Score=40.57 Aligned_cols=54 Identities=30% Similarity=0.390 Sum_probs=39.6
Q ss_pred cC-CeEEecCCCchHHHHHHHHHHHHHcC-------------CcEEEEecCH----HHHHHHHHHHHHHhhhc
Q 002515 16 DG-SIAEMKTGEGKTLVSTLAAYLNALTG-------------EGVHVVTVND----YLAQRDAEWMERVHRFL 70 (913)
Q Consensus 16 ~G-~IaEm~TGEGKTLva~lpa~l~AL~G-------------~~VhVvT~Nd----yLA~RDae~~~~~y~~L 70 (913)
+| +++|..-|+|||-+.+.. ||.-|.| ..+.|||-++ +|..|..+.+..++..+
T Consensus 17 ~G~~LIEASAGTGKTyTIa~l-yLrLlL~~g~~~~~~~~L~~~~ILvvTFT~aAt~Elr~RIr~rL~~~~~~~ 88 (1181)
T PRK10876 17 QGERLIEASAGTGKTFTIAAL-YLRLLLGLGGSAAFPRPLTVEEILVVTFTEAATEELRGRIRSNIHELRIAC 88 (1181)
T ss_pred CCCEEEEeCCCCcHHHHHHHH-HHHHHccCCccccccCCCChhhEEEEechHHHHHHHHHHHHHHHHHHHHHH
Confidence 55 499999999999765543 3344443 2578999876 88899988887776655
No 401
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=28.56 E-value=73 Score=38.62 Aligned_cols=38 Identities=32% Similarity=0.349 Sum_probs=24.6
Q ss_pred chhHHHHHHHH-----hcCC-eEEecCCCchHHH--HHHHHHHHHH
Q 002515 4 FDVQIIGGAVL-----HDGS-IAEMKTGEGKTLV--STLAAYLNAL 41 (913)
Q Consensus 4 ~dvQl~g~l~L-----~~G~-IaEm~TGEGKTLv--a~lpa~l~AL 41 (913)
||-|..=..-+ .+|+ +.||.+|.|||.+ ++..+|-...
T Consensus 18 YPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~ 63 (755)
T KOG1131|consen 18 YPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHY 63 (755)
T ss_pred CHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhC
Confidence 45666544433 2677 9999999999965 4445554333
No 402
>COG1074 RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair]
Probab=28.43 E-value=85 Score=41.77 Aligned_cols=54 Identities=20% Similarity=0.241 Sum_probs=38.9
Q ss_pred hcCCeEEecCCCchHHHHHHHHHHHHHcCC------cEEEEecCH----HHHHHHHHHHHHHhhh
Q 002515 15 HDGSIAEMKTGEGKTLVSTLAAYLNALTGE------GVHVVTVND----YLAQRDAEWMERVHRF 69 (913)
Q Consensus 15 ~~G~IaEm~TGEGKTLva~lpa~l~AL~G~------~VhVvT~Nd----yLA~RDae~~~~~y~~ 69 (913)
....++++..|+|||-|.+.-.. ..|.++ ...|||.|. +|..|..+.+......
T Consensus 16 ~~~~lveASAGSGKT~vL~~r~l-rlLl~~~~~~v~~ILvvTFT~aAa~Emk~RI~~~L~~~~~~ 79 (1139)
T COG1074 16 GQSVLVEASAGTGKTFVLAERVL-RLLLEGGPLDVDEILVVTFTKAAAAEMKERIRDRLKEALQE 79 (1139)
T ss_pred CCcEEEEEcCCCCchhHHHHHHH-HHHhhcCCCChhHeeeeeccHHHHHHHHHHHHHHHHHHHhc
Confidence 34459999999999988766654 454443 357999886 7777887777776554
No 403
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=28.40 E-value=1e+02 Score=34.17 Aligned_cols=52 Identities=23% Similarity=0.305 Sum_probs=45.8
Q ss_pred CCCeEEeChhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHCCCC
Q 002515 327 LPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIP 379 (913)
Q Consensus 327 ~~d~v~~t~~~k~~aii~ei~~~~~~grPVLI~t~Si~~SE~ls~~L~~~gi~ 379 (913)
.=|.+|.+..+=|++ ++.+.+..+.|-.+.++++++++++.+...|++.|.-
T Consensus 163 ~vDav~LDmp~PW~~-le~~~~~Lkpgg~~~~y~P~veQv~kt~~~l~~~g~~ 214 (256)
T COG2519 163 DVDAVFLDLPDPWNV-LEHVSDALKPGGVVVVYSPTVEQVEKTVEALRERGFV 214 (256)
T ss_pred ccCEEEEcCCChHHH-HHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhcCcc
Confidence 457899999999988 6677777889999999999999999999999999864
No 404
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=28.29 E-value=69 Score=34.95 Aligned_cols=37 Identities=32% Similarity=0.301 Sum_probs=28.8
Q ss_pred EecCCCchHHHHHHHHHHHHHcCCcEEEEe--cCHHHHH
Q 002515 21 EMKTGEGKTLVSTLAAYLNALTGEGVHVVT--VNDYLAQ 57 (913)
Q Consensus 21 Em~TGEGKTLva~lpa~l~AL~G~~VhVvT--~NdyLA~ 57 (913)
.=|=|.|||-++++.+...|-.|.+|.++= ||.-|++
T Consensus 8 s~KGGaGKTT~~~~LAs~la~~G~~V~lIDaDpn~pl~~ 46 (231)
T PF07015_consen 8 SSKGGAGKTTAAMALASELAARGARVALIDADPNQPLAK 46 (231)
T ss_pred cCCCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCcHHH
Confidence 345699999888877777788999999884 6666663
No 405
>PRK05636 replicative DNA helicase; Provisional
Probab=28.27 E-value=2.8e+02 Score=33.71 Aligned_cols=110 Identities=11% Similarity=0.096 Sum_probs=58.6
Q ss_pred hcCC--eEEecCCCchHHHHHHHHHHHHH-cCCcEEEEe---cCHHHHHHHHHHHHHHhhhcCCeEEEE-cCCCCHHHHH
Q 002515 15 HDGS--IAEMKTGEGKTLVSTLAAYLNAL-TGEGVHVVT---VNDYLAQRDAEWMERVHRFLGLSVGLI-QRGMIPEERR 87 (913)
Q Consensus 15 ~~G~--IaEm~TGEGKTLva~lpa~l~AL-~G~~VhVvT---~NdyLA~RDae~~~~~y~~LGLsv~~i-~~~~~~~~r~ 87 (913)
..|. |+-..||-|||..++-.+.-.|+ .|++|.+++ +.+.|+.|-.... -+++...+ .+.++.++..
T Consensus 263 ~~G~Liiiaarpg~GKT~~al~~a~~~a~~~g~~v~~fSlEMs~~ql~~R~ls~~------s~v~~~~i~~g~l~~~e~~ 336 (505)
T PRK05636 263 RGGQMIIVAARPGVGKSTLALDFMRSASIKHNKASVIFSLEMSKSEIVMRLLSAE------AEVRLSDMRGGKMDEDAWE 336 (505)
T ss_pred CCCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEeeCCHHHHHHHHHHHh------cCCCHHHHhcCCCCHHHHH
Confidence 4566 56778999999765544443454 478888774 3345555543322 22222222 2345544432
Q ss_pred hc-------cCCCeEEECCCcchhhHHHHhhccchhhhhccCCCCceEEEeecchh
Q 002515 88 SN-------YRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDS 136 (913)
Q Consensus 88 ~a-------Y~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs 136 (913)
.. .+..+..-....+..+.++.....- .... +++++|||=..-
T Consensus 337 ~~~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~~---~~~~---~~~lvvIDYLql 386 (505)
T PRK05636 337 KLVQRLGKIAQAPIFIDDSANLTMMEIRSKARRL---KQKH---DLKLIVVDYLQL 386 (505)
T ss_pred HHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHH---HHhc---CCCEEEEcchHh
Confidence 21 1234444444456666776654321 1123 688999998774
No 406
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=28.18 E-value=1.7e+02 Score=33.46 Aligned_cols=94 Identities=26% Similarity=0.393 Sum_probs=60.9
Q ss_pred ccCcccCh--hhhHHHHh-HhCCcccCCceeeeeeeehhHHhhcC------cccccCCCcccH-HHHHHHHhCCCeEEeC
Q 002515 248 EEKRRWSE--GIHQAVEA-KEGLKIQADSVVVAQITYQSLFKLYP------KLSGMTGTAKTE-EKEFLKMFQMPVIEVP 317 (913)
Q Consensus 248 ~~gr~ws~--GLHQaiea-KEgv~i~~e~~t~a~IT~q~~F~~Y~------kL~GmTGTa~te-~~Ef~~iY~l~vv~IP 317 (913)
.|+-+|+| ||.-|=|| ||-| +--|-|..||.-=+ -|+|=-||.++- ++-...--|-.++.|.
T Consensus 127 KPNVkWsDVAGLE~AKeALKEAV--------ILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvS 198 (439)
T KOG0739|consen 127 KPNVKWSDVAGLEGAKEALKEAV--------ILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVS 198 (439)
T ss_pred CCCCchhhhccchhHHHHHHhhe--------eecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEee
Confidence 57899998 88866555 4543 33467777775322 688999999873 4444444454445443
Q ss_pred CCCCcccccCCCeEEeChhHHH----HHHHHHHHHHHhcCCcEEEEecch
Q 002515 318 TNLPNIRVDLPIQSFATARGKW----EYARQEVESMFRLGRPVLVGSTSV 363 (913)
Q Consensus 318 t~~p~~R~d~~d~v~~t~~~k~----~aii~ei~~~~~~grPVLI~t~Si 363 (913)
+ .+.-.|| ..++..+-++.+...|-+||.--|
T Consensus 199 S--------------SDLvSKWmGESEkLVknLFemARe~kPSIIFiDEi 234 (439)
T KOG0739|consen 199 S--------------SDLVSKWMGESEKLVKNLFEMARENKPSIIFIDEI 234 (439)
T ss_pred h--------------HHHHHHHhccHHHHHHHHHHHHHhcCCcEEEeehh
Confidence 3 1233455 357777778888889999996544
No 407
>PLN02748 tRNA dimethylallyltransferase
Probab=28.04 E-value=1.2e+02 Score=36.32 Aligned_cols=71 Identities=27% Similarity=0.411 Sum_probs=39.8
Q ss_pred ccccCCCcccH-HHHHHHHhCCCeE-----------EeCCCCCcc--cccCCCeEE--e------ChhHHHHHHHHHHHH
Q 002515 291 LSGMTGTAKTE-EKEFLKMFQMPVI-----------EVPTNLPNI--RVDLPIQSF--A------TARGKWEYARQEVES 348 (913)
Q Consensus 291 L~GmTGTa~te-~~Ef~~iY~l~vv-----------~IPt~~p~~--R~d~~d~v~--~------t~~~k~~aii~ei~~ 348 (913)
|.|-|||.+|. +.++.+.+|..++ .|=|++|.. |..-|..++ . +...........|.+
T Consensus 27 i~GptgsGKs~la~~la~~~~~eii~~DsmQVYrgLdIgTaKpt~eE~~~VpHHLid~v~p~e~ysv~~F~~~A~~~I~~ 106 (468)
T PLN02748 27 VMGPTGSGKSKLAVDLASHFPVEIINADSMQVYSGLDVLTNKVPLHEQKGVPHHLLGVISPSVEFTAKDFRDHAVPLIEE 106 (468)
T ss_pred EECCCCCCHHHHHHHHHHhcCeeEEcCchheeeCCcchhcCCCCHHHHcCCCCeeEeecCCCCcCcHHHHHHHHHHHHHH
Confidence 78999999985 4566655553332 266788874 223333222 1 223333333444555
Q ss_pred HHhcC-CcEEEEec
Q 002515 349 MFRLG-RPVLVGST 361 (913)
Q Consensus 349 ~~~~g-rPVLI~t~ 361 (913)
.++.| .|||||-+
T Consensus 107 I~~rgk~PIlVGGT 120 (468)
T PLN02748 107 ILSRNGLPVIVGGT 120 (468)
T ss_pred HHhcCCCeEEEcCh
Confidence 55555 68998855
No 408
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=27.94 E-value=80 Score=39.74 Aligned_cols=34 Identities=24% Similarity=0.372 Sum_probs=19.4
Q ss_pred cchhhHHHHhhccchhhhhccCCCCceEEEeecchhh
Q 002515 101 ELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV 137 (913)
Q Consensus 101 e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsi 137 (913)
..+.|-+|+-+..-....... +..++||||||.|
T Consensus 98 ~~gVd~IRelle~a~~~P~~g---k~KVIIIDEad~L 131 (709)
T PRK08691 98 NTGIDNIREVLENAQYAPTAG---KYKVYIIDEVHML 131 (709)
T ss_pred cCCHHHHHHHHHHHHhhhhhC---CcEEEEEECcccc
Confidence 345566666543211111223 6789999999964
No 409
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=27.93 E-value=94 Score=39.02 Aligned_cols=13 Identities=31% Similarity=0.590 Sum_probs=11.4
Q ss_pred CceEEEeecchhh
Q 002515 125 PFHFAIVDEVDSV 137 (913)
Q Consensus 125 ~~~~aIVDEvDsi 137 (913)
+..++||||||.|
T Consensus 118 k~KV~IIDEVh~L 130 (702)
T PRK14960 118 RFKVYLIDEVHML 130 (702)
T ss_pred CcEEEEEechHhc
Confidence 6789999999965
No 410
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=27.88 E-value=3e+02 Score=33.06 Aligned_cols=38 Identities=29% Similarity=0.377 Sum_probs=27.9
Q ss_pred cCC--eEEecCCCchHHHHHHHHHHHHHcCCcEEEEecCH
Q 002515 16 DGS--IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVND 53 (913)
Q Consensus 16 ~G~--IaEm~TGEGKTLva~lpa~l~AL~G~~VhVvT~Nd 53 (913)
.|. +..=.+|.|||..+.--++-.+..|.+|..++.-.
T Consensus 272 ~g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e~ 311 (509)
T PRK09302 272 RGSIILVSGATGTGKTLLASKFAEAACRRGERCLLFAFEE 311 (509)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecC
Confidence 455 44557899999876666665678899999887643
No 411
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=27.85 E-value=67 Score=33.85 Aligned_cols=39 Identities=18% Similarity=0.071 Sum_probs=24.0
Q ss_pred cCCe-EEecCCCchHHHHHHHHHHHH-HcCCcEEEEecCHH
Q 002515 16 DGSI-AEMKTGEGKTLVSTLAAYLNA-LTGEGVHVVTVNDY 54 (913)
Q Consensus 16 ~G~I-aEm~TGEGKTLva~lpa~l~A-L~G~~VhVvT~Ndy 54 (913)
..|+ +--.||+|||-++...+.-.. -.|.+|.|+=+|.+
T Consensus 23 ~~H~~I~G~TGsGKS~~~~~ll~~l~~~~~~~~ii~D~~GE 63 (229)
T PF01935_consen 23 NRHIAIFGTTGSGKSNTVKVLLEELLKKKGAKVIIFDPHGE 63 (229)
T ss_pred cceEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEcCCCc
Confidence 4443 345799999976665554222 45567777766654
No 412
>PRK06646 DNA polymerase III subunit chi; Provisional
Probab=27.75 E-value=1.1e+02 Score=31.22 Aligned_cols=52 Identities=13% Similarity=0.056 Sum_probs=44.6
Q ss_pred eChhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHC----CCCeEEec
Q 002515 333 ATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQ----GIPHNVLN 384 (913)
Q Consensus 333 ~t~~~k~~aii~ei~~~~~~grPVLI~t~Si~~SE~ls~~L~~~----gi~~~vLn 384 (913)
.+...+...+...+.+..++|..|+|.|.+.+.++.|-+.|=.. -|||....
T Consensus 9 L~~~~~~~~acrL~~Ka~~~G~rv~I~~~d~~~~~~LD~~LWtf~~~SFlPH~~~~ 64 (154)
T PRK06646 9 TSDELLLKSILLLIEKCYYSDLKSVILTADADQQEMLNKNLWTYSRKQFIPHGSKL 64 (154)
T ss_pred eCCChHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHhcCCCCCCCCCCCCCC
Confidence 46777888999999999999999999999999999999999553 48987643
No 413
>PF02698 DUF218: DUF218 domain; InterPro: IPR003848 This domain of unknown function is found in several uncharacterised proteins.; PDB: 3CA8_A.
Probab=27.72 E-value=2.3e+02 Score=27.87 Aligned_cols=76 Identities=17% Similarity=0.221 Sum_probs=34.6
Q ss_pred EeChhHHHHHHHHHHHHHHhcCCcEEEEec------chhhHHHHHHHHHHCCCCeEEec--cCCcchhhHH----HHHHh
Q 002515 332 FATARGKWEYARQEVESMFRLGRPVLVGST------SVENSEYLSDLLKQQGIPHNVLN--ARPKYAAREA----ETVAQ 399 (913)
Q Consensus 332 ~~t~~~k~~aii~ei~~~~~~grPVLI~t~------Si~~SE~ls~~L~~~gi~~~vLn--A~~k~~~~Ea----~Iia~ 399 (913)
......+....++..++ ..-|.||+|. ...+++.+.+.|.+.|+|...+. ....+..+++ .++.+
T Consensus 19 ~~~~~~R~~~a~~L~~~---g~~~~il~SGg~~~~~~~~ea~~~~~~l~~~gvp~~~I~~e~~s~~T~ena~~~~~~~~~ 95 (155)
T PF02698_consen 19 SPESRERLDEAARLYKA---GYAPRILFSGGYGHGDGRSEAEAMRDYLIELGVPEERIILEPKSTNTYENARFSKRLLKE 95 (155)
T ss_dssp --S-HHHHHHHHHHHH----HHT--EEEE--SSTTHTS-HHHHHHHHHHHT---GGGEEEE----SHHHHHHHHHHHHHT
T ss_pred cHhHHHHHHHHHHHHhc---CCCCeEEECCCCCCCCCCCHHHHHHHHHHhcccchheeEccCCCCCHHHHHHHHHHHHHh
Confidence 34444555444444433 2246788887 67789999999999999844321 1123344443 45555
Q ss_pred cCCCccEEEEcC
Q 002515 400 AGRKYAITISTN 411 (913)
Q Consensus 400 AG~~G~VTIATn 411 (913)
.|- ..|+|.|+
T Consensus 96 ~~~-~~iilVT~ 106 (155)
T PF02698_consen 96 RGW-QSIILVTS 106 (155)
T ss_dssp -SS-S-EEEE--
T ss_pred hcC-CeEEEECC
Confidence 664 57777775
No 414
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=27.52 E-value=1.3e+02 Score=26.73 Aligned_cols=36 Identities=14% Similarity=0.138 Sum_probs=30.6
Q ss_pred hcCCcEEEEecchhhHHHHHHHHHHCCCCeEEeccC
Q 002515 351 RLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNAR 386 (913)
Q Consensus 351 ~~grPVLI~t~Si~~SE~ls~~L~~~gi~~~vLnA~ 386 (913)
..++||+++|.+-..|...+..|+..|+...+|+++
T Consensus 49 ~~~~~vvl~c~~g~~a~~~a~~L~~~G~~v~~l~GG 84 (90)
T cd01524 49 PKDKEIIVYCAVGLRGYIAARILTQNGFKVKNLDGG 84 (90)
T ss_pred CCCCcEEEEcCCChhHHHHHHHHHHCCCCEEEecCC
Confidence 567899999999888999999999999966677764
No 415
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=27.45 E-value=2.4e+02 Score=32.25 Aligned_cols=56 Identities=18% Similarity=0.166 Sum_probs=44.5
Q ss_pred cCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHHhccCCCeEEECC
Q 002515 42 TGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNYRCDITYTNN 99 (913)
Q Consensus 42 ~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLsv~~i~~~~~~~~r~~aY~~DI~YgT~ 99 (913)
.|+++.|++++-.-|++-++.+... ..++.+..+.+.++..+|...-..+|+.+|.
T Consensus 271 ~~~k~LIf~nt~~~~~~l~~~L~~~--~~~~~~~~l~g~~~~~~R~~~~~~~iLVaTd 326 (357)
T TIGR03158 271 PGERGAIILDSLDEVNRLSDLLQQQ--GLGDDIGRITGFAPKKDRERAMQFDILLGTS 326 (357)
T ss_pred CCCeEEEEECCHHHHHHHHHHHhhh--CCCceEEeeecCCCHHHHHHhccCCEEEEec
Confidence 5788999999988888777777652 2346788888889888887777889999996
No 416
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=27.10 E-value=1.2e+02 Score=33.32 Aligned_cols=16 Identities=31% Similarity=0.565 Sum_probs=14.2
Q ss_pred CceEEEeecchhhhhc
Q 002515 125 PFHFAIVDEVDSVLID 140 (913)
Q Consensus 125 ~~~~aIVDEvDsiLiD 140 (913)
+..++||||||.|-.|
T Consensus 109 ~~kviiidead~mt~~ 124 (325)
T COG0470 109 GYKVVIIDEADKLTED 124 (325)
T ss_pred CceEEEeCcHHHHhHH
Confidence 7899999999999754
No 417
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=26.90 E-value=64 Score=35.51 Aligned_cols=44 Identities=30% Similarity=0.285 Sum_probs=30.1
Q ss_pred cCCCchHHHHHH-HHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEE
Q 002515 23 KTGEGKTLVSTL-AAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVG 75 (913)
Q Consensus 23 ~TGEGKTLva~l-pa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLsv~ 75 (913)
+-|.|||.++++ +..+.+=.|..|.+|-.- .--.+...||+..-
T Consensus 8 KGG~GKTtiaalll~~l~~~~~~~VLvVDaD---------pd~nL~~~LGve~~ 52 (255)
T COG3640 8 KGGVGKTTIAALLLKRLLSKGGYNVLVVDAD---------PDSNLPEALGVEEP 52 (255)
T ss_pred CCCccHHHHHHHHHHHHHhcCCceEEEEeCC---------CCCChHHhcCCCCC
Confidence 569999987776 666555556888888542 22346678888763
No 418
>CHL00095 clpC Clp protease ATP binding subunit
Probab=26.84 E-value=56 Score=41.80 Aligned_cols=30 Identities=23% Similarity=0.246 Sum_probs=18.3
Q ss_pred eEEecCCCchHHHHHHHHHHHHHcCCcEEEEe
Q 002515 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVT 50 (913)
Q Consensus 19 IaEm~TGEGKTLva~lpa~l~AL~G~~VhVvT 50 (913)
+.-=.||.|||..|-..| ..|.|....++.
T Consensus 543 lf~Gp~GvGKt~lA~~LA--~~l~~~~~~~~~ 572 (821)
T CHL00095 543 LFSGPTGVGKTELTKALA--SYFFGSEDAMIR 572 (821)
T ss_pred EEECCCCCcHHHHHHHHH--HHhcCCccceEE
Confidence 344479999997665554 346665444443
No 419
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=26.83 E-value=3.8e+02 Score=32.46 Aligned_cols=66 Identities=17% Similarity=0.183 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHHhccC------CCeEEECC
Q 002515 30 LVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNYR------CDITYTNN 99 (913)
Q Consensus 30 Lva~lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLsv~~i~~~~~~~~r~~aY~------~DI~YgT~ 99 (913)
...+|-..+.-.....|.|.+.+...+.+ +...+...|++++.+.|++++++|..++. .+|.++|-
T Consensus 260 k~~~L~~ll~~~~~~~~IVF~~tk~~~~~----l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTD 331 (513)
T COG0513 260 KLELLLKLLKDEDEGRVIVFVRTKRLVEE----LAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVLVATD 331 (513)
T ss_pred HHHHHHHHHhcCCCCeEEEEeCcHHHHHH----HHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEec
Confidence 33344444343444569999998877765 66778889999999999999999987663 57777774
No 420
>PF13614 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D.
Probab=26.82 E-value=82 Score=30.73 Aligned_cols=45 Identities=27% Similarity=0.321 Sum_probs=28.9
Q ss_pred ecCCCchHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeE
Q 002515 22 MKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSV 74 (913)
Q Consensus 22 m~TGEGKTLva~lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLsv 74 (913)
.+=|.|||..++-.|...|-.|++|.+|-.+.+ ...+..++|...
T Consensus 8 ~~~g~G~t~~a~~lA~~la~~~~~Vllid~~~~--------~~~~~~~~~~~~ 52 (157)
T PF13614_consen 8 PKGGVGKTTLALNLAAALARKGKKVLLIDFDFF--------SPSLSRLLGIEP 52 (157)
T ss_dssp SSTTSSHHHHHHHHHHHHHHTTT-EEEEE--SS--------S-HHHHHTTSSS
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCCeEEEECCCC--------CCCccccccccc
Confidence 345999998777777778999988988876542 233555666553
No 421
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=26.75 E-value=1.9e+02 Score=35.91 Aligned_cols=55 Identities=18% Similarity=0.248 Sum_probs=36.0
Q ss_pred eEEecCCCchH--HHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHH-HHhhhcCCe
Q 002515 19 IAEMKTGEGKT--LVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWME-RVHRFLGLS 73 (913)
Q Consensus 19 IaEm~TGEGKT--Lva~lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~-~~y~~LGLs 73 (913)
+.=+.=--||| ++..+.+.+....|-.|..+..=..-+.--.+++. .+..|+|=+
T Consensus 206 VFLVPRRHGKTWf~VpiIsllL~s~~gI~IGYvAHqKhvs~~Vf~EI~~~lrrwF~~~ 263 (668)
T PHA03372 206 VFLVPRRHGKTWFIIPIISFLLKNIIGISIGYVAHQKHVSQFVLKEVEFRCRRMFPRK 263 (668)
T ss_pred EEEecccCCceehHHHHHHHHHHhhcCceEEEEeeHHHHHHHHHHHHHHHHhhhcCcc
Confidence 55666678999 45666665555778777777766666666555544 455677755
No 422
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=26.65 E-value=4.7e+02 Score=28.15 Aligned_cols=85 Identities=19% Similarity=0.131 Sum_probs=54.6
Q ss_pred HHHhcCCeEEecCCCchH-HHHHHHHHHHHHcCCcEEEEecCHHH--------------------HHHHHHHHHHHhhhc
Q 002515 12 AVLHDGSIAEMKTGEGKT-LVSTLAAYLNALTGEGVHVVTVNDYL--------------------AQRDAEWMERVHRFL 70 (913)
Q Consensus 12 l~L~~G~IaEm~TGEGKT-Lva~lpa~l~AL~G~~VhVvT~NdyL--------------------A~RDae~~~~~y~~L 70 (913)
+.-++|+|.- ||-||| +++=--|.-.+=.|.++++|-|.+.+ -.+..-...|..+-+
T Consensus 35 i~~~~gkv~V--~G~GkSG~Igkk~Aa~L~s~G~~a~fv~p~ea~hgdlg~i~~~DvviaiS~SGeT~el~~~~~~aK~~ 112 (202)
T COG0794 35 ILECKGKVFV--TGVGKSGLIGKKFAARLASTGTPAFFVGPAEALHGDLGMITPGDVVIAISGSGETKELLNLAPKAKRL 112 (202)
T ss_pred HHhcCCcEEE--EcCChhHHHHHHHHHHHHccCCceEEecCchhccCCccCCCCCCEEEEEeCCCcHHHHHHHHHHHHHc
Confidence 3445899876 899999 44333333345678888888865433 123344567788888
Q ss_pred CCeEEEEcCCCCHHHHHhccCCCeEEECCCc
Q 002515 71 GLSVGLIQRGMIPEERRSNYRCDITYTNNSE 101 (913)
Q Consensus 71 GLsv~~i~~~~~~~~r~~aY~~DI~YgT~~e 101 (913)
|.++..+++.-++. .+-.+||+...+..
T Consensus 113 g~~liaiT~~~~Ss---Lak~aDvvl~ip~~ 140 (202)
T COG0794 113 GAKLIAITSNPDSS---LAKAADVVLVIPVK 140 (202)
T ss_pred CCcEEEEeCCCCCh---HHHhcCeEEEccCc
Confidence 89988887653321 34557777777654
No 423
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=26.50 E-value=1.9e+02 Score=37.47 Aligned_cols=55 Identities=18% Similarity=0.116 Sum_probs=45.0
Q ss_pred HcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHHhccC----CCeEEECC
Q 002515 41 LTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNYR----CDITYTNN 99 (913)
Q Consensus 41 L~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLsv~~i~~~~~~~~r~~aY~----~DI~YgT~ 99 (913)
-.|++|.|.|.+.. +++++..+....|+++.++.+.++..++..... ..||.+||
T Consensus 447 ~~GrpVLV~t~sv~----~se~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~VtIATn 505 (908)
T PRK13107 447 ERGQPVLVGTVSIE----QSELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGAVTIATN 505 (908)
T ss_pred HcCCCEEEEeCcHH----HHHHHHHHHHHCCCCeEeccCcccHHHHHHHHhCCCCCcEEEecC
Confidence 46999999999987 566888888899999999988888777765442 25999998
No 424
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=26.48 E-value=51 Score=37.51 Aligned_cols=37 Identities=27% Similarity=0.534 Sum_probs=26.1
Q ss_pred hcCC-eEEecCCCchHHH-HHHHHHHHHHcCCcEEEEecCH
Q 002515 15 HDGS-IAEMKTGEGKTLV-STLAAYLNALTGEGVHVVTVND 53 (913)
Q Consensus 15 ~~G~-IaEm~TGEGKTLv-a~lpa~l~AL~G~~VhVvT~Nd 53 (913)
..|- ++-=.||+|||.| |+|.-|+|. -+..||+|--|
T Consensus 124 ~~GLILVTGpTGSGKSTTlAamId~iN~--~~~~HIlTIED 162 (353)
T COG2805 124 PRGLILVTGPTGSGKSTTLAAMIDYINK--HKAKHILTIED 162 (353)
T ss_pred CCceEEEeCCCCCcHHHHHHHHHHHHhc--cCCcceEEecC
Confidence 3566 6677899999864 666666553 35679999754
No 425
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=26.40 E-value=76 Score=35.57 Aligned_cols=34 Identities=18% Similarity=0.226 Sum_probs=25.8
Q ss_pred eEEecCCCchHHHHHHHHHHHHHcCCcEEEEecC
Q 002515 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVN 52 (913)
Q Consensus 19 IaEm~TGEGKTLva~lpa~l~AL~G~~VhVvT~N 52 (913)
|.-.+-|.|||.+++-.|+..|..|++|.+|=-+
T Consensus 98 v~~~KGGvGkTT~a~nLA~~la~~g~~VlLvD~D 131 (322)
T TIGR03815 98 VIGGRGGAGASTLAAALALAAARHGLRTLLVDAD 131 (322)
T ss_pred EEcCCCCCcHHHHHHHHHHHHHhcCCCEEEEecC
Confidence 5566889999987666666667889888887554
No 426
>TIGR01222 minC septum site-determining protein MinC. The minC protein assists in correct placement of the septum for cell division by inhibiting septum formation at other sites. Homologs from Deinocoocus, Synechocystis PCC 6803, and Helicobacter pylori do not hit the full length of the model and score between the trusted and noise cutoffs.
Probab=26.33 E-value=39 Score=36.19 Aligned_cols=45 Identities=42% Similarity=0.677 Sum_probs=40.1
Q ss_pred cchhhhhcCceEEEeccCCCchhhHhhhhcc--cccCCCCCceeEEEeccchhhhhcc
Q 002515 550 EGSEVKRLGGLHVIGTSLHESRRIDNQLRGR--AGRQGDPGSTRFMVSLQDEMFQKFS 605 (913)
Q Consensus 550 ~~~~V~~~GGL~VIgTerhes~RiD~QLrGR--agRQGdpGss~f~lSLeD~l~~~f~ 605 (913)
...+|.+-|=.||.|+ |||| ||=+||.....|-.+|+=+++++-|
T Consensus 140 ~GAeViA~GnI~V~G~-----------LrG~a~AG~~Gd~~A~I~a~~l~ae~v~Iag 186 (217)
T TIGR01222 140 AGAEVLADGNIHVYGK-----------LRGRALAGANGDTSAVIFALDLQAELISIAG 186 (217)
T ss_pred CCCEEEeCCCEEEEEE-----------eccEEEcCCCCCCCcEEEeccCCccEEEECC
Confidence 3568999999999998 6777 6999999999999999999999866
No 427
>PRK06835 DNA replication protein DnaC; Validated
Probab=26.24 E-value=76 Score=36.25 Aligned_cols=37 Identities=27% Similarity=0.277 Sum_probs=23.2
Q ss_pred CCeEEecCCCchHH-HHHHHHHHHHHcCCcEEEEecCHH
Q 002515 17 GSIAEMKTGEGKTL-VSTLAAYLNALTGEGVHVVTVNDY 54 (913)
Q Consensus 17 G~IaEm~TGEGKTL-va~lpa~l~AL~G~~VhVvT~Ndy 54 (913)
|-+.-=.||.|||- +.+++..+ .-.|+.|..+|..+.
T Consensus 185 ~Lll~G~~GtGKThLa~aIa~~l-~~~g~~V~y~t~~~l 222 (329)
T PRK06835 185 NLLFYGNTGTGKTFLSNCIAKEL-LDRGKSVIYRTADEL 222 (329)
T ss_pred cEEEECCCCCcHHHHHHHHHHHH-HHCCCeEEEEEHHHH
Confidence 33566689999995 43433332 235788888877553
No 428
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=26.24 E-value=69 Score=38.91 Aligned_cols=13 Identities=38% Similarity=0.621 Sum_probs=11.4
Q ss_pred CceEEEeecchhh
Q 002515 125 PFHFAIVDEVDSV 137 (913)
Q Consensus 125 ~~~~aIVDEvDsi 137 (913)
++.++||||||.|
T Consensus 119 ~~kVvIIDEad~l 131 (527)
T PRK14969 119 RFKVYIIDEVHML 131 (527)
T ss_pred CceEEEEcCcccC
Confidence 6789999999976
No 429
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=26.15 E-value=2e+02 Score=34.11 Aligned_cols=69 Identities=13% Similarity=0.135 Sum_probs=48.4
Q ss_pred hHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHHhcc------CCCeEEECCC
Q 002515 28 KTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNY------RCDITYTNNS 100 (913)
Q Consensus 28 KTLva~lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLsv~~i~~~~~~~~r~~aY------~~DI~YgT~~ 100 (913)
+.+..++..+.....|+.+.|.|++..-+++-+ ..+...|++++...+++++++|.... ..+|+.+|..
T Consensus 211 ~~~~~l~~~l~~~~~~~~~IIF~~s~~~~e~la----~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~ 285 (470)
T TIGR00614 211 KILEDLLRFIRKEFKGKSGIIYCPSRKKSEQVT----ASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVA 285 (470)
T ss_pred cHHHHHHHHHHHhcCCCceEEEECcHHHHHHHH----HHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEech
Confidence 444444433323456778889999876655544 44556799999999999999987654 3589999963
No 430
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=26.15 E-value=95 Score=35.90 Aligned_cols=47 Identities=19% Similarity=0.277 Sum_probs=26.5
Q ss_pred HHHHHHHHhcCC-eEEecCCCchHHH-HHHHHHHHHHcCCcEEEEecCH
Q 002515 7 QIIGGAVLHDGS-IAEMKTGEGKTLV-STLAAYLNALTGEGVHVVTVND 53 (913)
Q Consensus 7 Ql~g~l~L~~G~-IaEm~TGEGKTLv-a~lpa~l~AL~G~~VhVvT~Nd 53 (913)
++.-.+.-..|. ++-=.||+|||-+ .+|.-+++.-.+.+.+|+|..|
T Consensus 125 ~~~~~~~~~~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~Ed 173 (358)
T TIGR02524 125 AIIDAIAPQEGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEA 173 (358)
T ss_pred HHHHHHhccCCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCC
Confidence 344433323455 4555899999854 4444444333445567888654
No 431
>PRK13768 GTPase; Provisional
Probab=26.08 E-value=71 Score=34.85 Aligned_cols=29 Identities=28% Similarity=0.480 Sum_probs=21.2
Q ss_pred cCCCchHHH-HHHHHHHHHHcCCcEEEEecC
Q 002515 23 KTGEGKTLV-STLAAYLNALTGEGVHVVTVN 52 (913)
Q Consensus 23 ~TGEGKTLv-a~lpa~l~AL~G~~VhVvT~N 52 (913)
..|.|||.. ..+..+ .+..|+.|++|.-.
T Consensus 10 ~~G~GKTt~~~~~~~~-l~~~g~~v~~i~~D 39 (253)
T PRK13768 10 TAGSGKTTLTKALSDW-LEEQGYDVAIVNLD 39 (253)
T ss_pred CCCccHHHHHHHHHHH-HHhcCCceEEEECC
Confidence 489999874 445444 46789999998744
No 432
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=25.91 E-value=1.5e+02 Score=32.32 Aligned_cols=37 Identities=30% Similarity=0.190 Sum_probs=27.4
Q ss_pred cCC--eEEecCCCchHHHHHHHHHHHHHcCCcEEEEecC
Q 002515 16 DGS--IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVN 52 (913)
Q Consensus 16 ~G~--IaEm~TGEGKTLva~lpa~l~AL~G~~VhVvT~N 52 (913)
.|. ++.=.+|.|||..++--++-.|..|.+|..++.-
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~E 73 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVE 73 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEec
Confidence 455 4566789999987776666566788888888764
No 433
>KOG2036 consensus Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=25.87 E-value=65 Score=40.21 Aligned_cols=100 Identities=16% Similarity=0.221 Sum_probs=57.4
Q ss_pred EecCCCchHHHHHHHHHHHHHcCC-cEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHHhccCCCeEEECC
Q 002515 21 EMKTGEGKTLVSTLAAYLNALTGE-GVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNYRCDITYTNN 99 (913)
Q Consensus 21 Em~TGEGKTLva~lpa~l~AL~G~-~VhVvT~NdyLA~RDae~~~~~y~~LGLsv~~i~~~~~~~~r~~aY~~DI~YgT~ 99 (913)
-..-|-|||.+..+.++-..-.|. .+.|-.|+.. .+.-+|+|. ..|.+.-+-++--.-||++.||
T Consensus 281 tA~RGRGKSAALGlsiA~AVa~GysnIyvtSPspe-------NlkTlFeFv-------~kGfDaL~Yqeh~Dy~iI~s~n 346 (1011)
T KOG2036|consen 281 TASRGRGKSAALGLSIAGAVAFGYSNIYVTSPSPE-------NLKTLFEFV-------FKGFDALEYQEHVDYDIIQSTN 346 (1011)
T ss_pred EecCCCCchhhhhHHHHHHHhcCcceEEEcCCChH-------HHHHHHHHH-------HcchhhhcchhhcchhhhhhcC
Confidence 456799999998888774444564 4666667664 566666653 1122211112223457999999
Q ss_pred CcchhhHHHHhhcc---------chh-hhhccCCCCceEEEeecchhh
Q 002515 100 SELGFDYLRDNLAA---------NSE-QLVMRWPKPFHFAIVDEVDSV 137 (913)
Q Consensus 100 ~e~~fDyLrD~l~~---------~~~-~~v~r~~R~~~~aIVDEvDsi 137 (913)
.+|---..|=|+-. +|. ..++. ..+.++||||-.|
T Consensus 347 p~fkkaivRInifr~hrQtIQYi~P~D~~kl~---q~eLlVIDEAAAI 391 (1011)
T KOG2036|consen 347 PDFKKAIVRINIFREHRQTIQYISPHDHQKLG---QAELLVIDEAAAI 391 (1011)
T ss_pred hhhhhhEEEEEEeccccceeEeeccchhhhcc---CCcEEEechhhcC
Confidence 98753333333321 122 23343 5678888888665
No 434
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=25.75 E-value=5.4e+02 Score=25.34 Aligned_cols=93 Identities=11% Similarity=0.075 Sum_probs=50.3
Q ss_pred ccccCCCcccH-HHHHHHHhCCCeEEeCCCCCc--ccccCCCeE--EeChhHHHHHHHHHHHHHHhcCCcEEEEecchhh
Q 002515 291 LSGMTGTAKTE-EKEFLKMFQMPVIEVPTNLPN--IRVDLPIQS--FATARGKWEYARQEVESMFRLGRPVLVGSTSVEN 365 (913)
Q Consensus 291 L~GmTGTa~te-~~Ef~~iY~l~vv~IPt~~p~--~R~d~~d~v--~~t~~~k~~aii~ei~~~~~~grPVLI~t~Si~~ 365 (913)
+.|.+|+.+|. +..+.+..+..++..=..... .+....... ......++..+.+.+......|..++|.+...
T Consensus 3 l~G~~GsGKSTla~~l~~~l~~~~v~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Vi~~t~~-- 80 (163)
T TIGR01313 3 LMGVAGSGKSTIASALAHRLGAKFIEGDDLHPAANIEKMSAGIPLNDDDRWPWLQNLNDASTAAAAKNKVGIITCSAL-- 80 (163)
T ss_pred EECCCCCCHHHHHHHHHHhcCCeEEeCccccChHHHHHHHcCCCCChhhHHHHHHHHHHHHHHHHhcCCCEEEEeccc--
Confidence 57999999874 667776666544432221100 010000011 12233455666667776777788877767654
Q ss_pred HHHHHHHHHHCCCCeEEecc
Q 002515 366 SEYLSDLLKQQGIPHNVLNA 385 (913)
Q Consensus 366 SE~ls~~L~~~gi~~~vLnA 385 (913)
.......++..+.++.++.-
T Consensus 81 ~~~~r~~~~~~~~~~~~i~l 100 (163)
T TIGR01313 81 KRHYRDILREAEPNLHFIYL 100 (163)
T ss_pred HHHHHHHHHhcCCCEEEEEE
Confidence 23444566677766655443
No 435
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=25.74 E-value=1.9e+02 Score=37.05 Aligned_cols=55 Identities=18% Similarity=0.149 Sum_probs=43.1
Q ss_pred HcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHHhcc----CCCeEEECC
Q 002515 41 LTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNY----RCDITYTNN 99 (913)
Q Consensus 41 L~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLsv~~i~~~~~~~~r~~aY----~~DI~YgT~ 99 (913)
..|++|.|.|.|. ++++++.......|+++.++.+++..+++.... ...|+.+||
T Consensus 426 ~~~~pvLIf~~t~----~~se~l~~~L~~~gi~~~~L~~~~~~~e~~~i~~ag~~g~VlIATd 484 (790)
T PRK09200 426 ETGRPVLIGTGSI----EQSETFSKLLDEAGIPHNLLNAKNAAKEAQIIAEAGQKGAVTVATN 484 (790)
T ss_pred hcCCCEEEEeCcH----HHHHHHHHHHHHCCCCEEEecCCccHHHHHHHHHcCCCCeEEEEcc
Confidence 4799999999996 455677777778899999999988777665433 247999997
No 436
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=25.62 E-value=1.1e+02 Score=26.65 Aligned_cols=37 Identities=24% Similarity=0.284 Sum_probs=31.8
Q ss_pred HhcCCcEEEEecchhhHHHHHHHHHHCCCC-eEEeccC
Q 002515 350 FRLGRPVLVGSTSVENSEYLSDLLKQQGIP-HNVLNAR 386 (913)
Q Consensus 350 ~~~grPVLI~t~Si~~SE~ls~~L~~~gi~-~~vLnA~ 386 (913)
...+.+|+|+|.+-..|..++..|+..|.+ ..+|+++
T Consensus 53 ~~~~~~iv~~c~~g~~a~~~~~~l~~~G~~~v~~l~GG 90 (100)
T smart00450 53 LDKDKPVVVYCRSGNRSAKAAWLLRELGFKNVYLLDGG 90 (100)
T ss_pred CCCCCeEEEEeCCCcHHHHHHHHHHHcCCCceEEecCC
Confidence 357789999999999999999999999988 6677764
No 437
>PF10861 DUF2784: Protein of Unknown function (DUF2784); InterPro: IPR021218 This is a family of uncharacterised protein. The function is not known however it is conserved in Bacteria.
Probab=25.61 E-value=36 Score=33.10 Aligned_cols=19 Identities=47% Similarity=0.774 Sum_probs=17.0
Q ss_pred hhHhhhhcccccCCCCCce
Q 002515 572 RIDNQLRGRAGRQGDPGST 590 (913)
Q Consensus 572 RiD~QLrGRagRQGdpGss 590 (913)
-.|||+|.|||++|-||+-
T Consensus 57 ~lE~~lR~~aG~~~y~~gF 75 (112)
T PF10861_consen 57 DLENWLRRRAGEAGYPGGF 75 (112)
T ss_pred HHHHHHHHHcCCCCCCCCH
Confidence 3899999999999999964
No 438
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=25.30 E-value=96 Score=39.96 Aligned_cols=32 Identities=28% Similarity=0.296 Sum_probs=19.7
Q ss_pred eEEecCCCchHHHHHHHHHHHHHcCCcEEEEecC
Q 002515 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVN 52 (913)
Q Consensus 19 IaEm~TGEGKTLva~lpa~l~AL~G~~VhVvT~N 52 (913)
+.-=.||.|||..+-..+- .|.|..-.+++.|
T Consensus 600 lf~Gp~GvGKT~lA~~La~--~l~~~~~~~~~~d 631 (852)
T TIGR03345 600 LLVGPSGVGKTETALALAE--LLYGGEQNLITIN 631 (852)
T ss_pred EEECCCCCCHHHHHHHHHH--HHhCCCcceEEEe
Confidence 3445799999987755443 3655544555543
No 439
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=25.12 E-value=1.1e+02 Score=37.54 Aligned_cols=13 Identities=31% Similarity=0.580 Sum_probs=11.6
Q ss_pred CceEEEeecchhh
Q 002515 125 PFHFAIVDEVDSV 137 (913)
Q Consensus 125 ~~~~aIVDEvDsi 137 (913)
+..++||||||.|
T Consensus 119 ~~kViIIDE~~~L 131 (559)
T PRK05563 119 KYKVYIIDEVHML 131 (559)
T ss_pred CeEEEEEECcccC
Confidence 6789999999976
No 440
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=25.00 E-value=1.8e+02 Score=36.72 Aligned_cols=87 Identities=23% Similarity=0.287 Sum_probs=64.5
Q ss_pred EeChhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEeccCCcchhhHHHHHH--hcCCCccEEEE
Q 002515 332 FATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVA--QAGRKYAITIS 409 (913)
Q Consensus 332 ~~t~~~k~~aii~ei~~~~~~grPVLI~t~Si~~SE~ls~~L~~~gi~~~vLnA~~k~~~~Ea~Iia--~AG~~G~VTIA 409 (913)
|.|...|+..+=+.+..+.+.|-.||+++.--..-+.+-++|.-+|..|--|.+..+ ...-+++|. +|-..--..++
T Consensus 1023 FitdSgKL~~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk-~~dRrd~vrDwQ~sdiFvFLLS 1101 (1185)
T KOG0388|consen 1023 FITDSGKLVVLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSK-ASDRRDVVRDWQASDIFVFLLS 1101 (1185)
T ss_pred hhccccceeeHHHHHHHhhcCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcch-hhHHHHHHhhccCCceEEEEEe
Confidence 457777777665566677789999999999999999999999999999999988533 222345665 56444455677
Q ss_pred cCCCCCCcce
Q 002515 410 TNMAGRGTDI 419 (913)
Q Consensus 410 TnmAGRGTDI 419 (913)
|.-.|-|+..
T Consensus 1102 TRAGGLGINL 1111 (1185)
T KOG0388|consen 1102 TRAGGLGINL 1111 (1185)
T ss_pred cccCcccccc
Confidence 8777776554
No 441
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=24.77 E-value=90 Score=34.29 Aligned_cols=33 Identities=36% Similarity=0.376 Sum_probs=24.0
Q ss_pred eEEecCCCchHH-HHHHHHHHHHHcCCcEEEEecC
Q 002515 19 IAEMKTGEGKTL-VSTLAAYLNALTGEGVHVVTVN 52 (913)
Q Consensus 19 IaEm~TGEGKTL-va~lpa~l~AL~G~~VhVvT~N 52 (913)
|.-++=|-|||- +|.|+.. .+..|+.|.+|=-.
T Consensus 6 i~s~kGGvG~TTltAnLA~a-L~~~G~~VlaID~d 39 (243)
T PF06564_consen 6 IVSPKGGVGKTTLTANLAWA-LARLGESVLAIDLD 39 (243)
T ss_pred EecCCCCCCHHHHHHHHHHH-HHHCCCcEEEEeCC
Confidence 455677999986 4555554 67889999988653
No 442
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=24.75 E-value=1.6e+02 Score=29.87 Aligned_cols=66 Identities=21% Similarity=0.116 Sum_probs=42.2
Q ss_pred cCCcEEEEecchhhHHHHHHHHHHCCC--CeEEeccCCcchhhHHHHHH-hcCCCccEEEEcC--CCCCCccee
Q 002515 352 LGRPVLVGSTSVENSEYLSDLLKQQGI--PHNVLNARPKYAAREAETVA-QAGRKYAITISTN--MAGRGTDII 420 (913)
Q Consensus 352 ~grPVLI~t~Si~~SE~ls~~L~~~gi--~~~vLnA~~k~~~~Ea~Iia-~AG~~G~VTIATn--mAGRGTDIk 420 (913)
.+-.+||+|+|-+..+.+.+.++..+. ...++... ....+.-+-. +.+ .|+|.+|+. -..=|+|++
T Consensus 8 ~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q~--~~~~~~~l~~~~~~-~~~il~~v~~g~~~EGiD~~ 78 (167)
T PF13307_consen 8 VPGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQG--SKSRDELLEEFKRG-EGAILLAVAGGSFSEGIDFP 78 (167)
T ss_dssp CSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEEST--CCHHHHHHHHHCCS-SSEEEEEETTSCCGSSS--E
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhhcccccceeeecC--cchHHHHHHHHHhc-cCeEEEEEecccEEEeecCC
Confidence 446899999999999999999887642 12333322 1223322222 444 789999998 788999998
No 443
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=24.55 E-value=1.6e+02 Score=32.81 Aligned_cols=51 Identities=20% Similarity=0.167 Sum_probs=32.7
Q ss_pred CCCchHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEE
Q 002515 24 TGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVG 75 (913)
Q Consensus 24 TGEGKTLva~lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLsv~ 75 (913)
+|.|||..+...+....-.|+.|.+++...+=. .-.+++....+.+|+.+.
T Consensus 84 ~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri-~~~~ql~~~~~~~~~~~~ 134 (270)
T PRK06731 84 TGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRI-GTVQQLQDYVKTIGFEVI 134 (270)
T ss_pred CCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCH-HHHHHHHHHhhhcCceEE
Confidence 999999876665554445678899998865521 123344555566666654
No 444
>TIGR01279 DPOR_bchN light-independent protochlorophyllide reductase, N subunit. This enzyme describes the N subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme involved in bacteriochlorophyll biosynthesis. This subunit shows homology to the nitrogenase molybdenum-iron protein NifN.
Probab=24.48 E-value=3.7e+02 Score=31.51 Aligned_cols=91 Identities=22% Similarity=0.224 Sum_probs=53.9
Q ss_pred hHHhhc-CcccccCCCc-----ccH----HHHHHHHhCCCeEEeCCCCCcccccCCCeEEe-ChhHHHHHHHHHHHHHHh
Q 002515 283 SLFKLY-PKLSGMTGTA-----KTE----EKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFA-TARGKWEYARQEVESMFR 351 (913)
Q Consensus 283 ~~F~~Y-~kL~GmTGTa-----~te----~~Ef~~iY~l~vv~IPt~~p~~R~d~~d~v~~-t~~~k~~aii~ei~~~~~ 351 (913)
+..+.| +++.++.+|. |.. .+++.+..+.+|+.++|. . |. +..+=+.++++.+.....
T Consensus 78 ~i~~~~~P~~I~V~tTC~se~IGDDi~~v~~~~~~~~~~pVi~v~tp--g---------f~g~~~~G~~~~~~alv~~~~ 146 (407)
T TIGR01279 78 QIKRDRNPSVIFLLSSCTPEVIKMDLEGLAERLSTNFGVPVLFAPAS--G---------LDYTFTQGEDTVLAALVPFCP 146 (407)
T ss_pred HHHhhcCCCEEEEECCchHHHHHhhHHHHHHHHHHhhCCCEEEeeCC--C---------ccccHHHHHHHHHHHHHHhhc
Confidence 445666 3555555555 432 356665678888888763 2 22 222223444443333221
Q ss_pred ------cCCcEEEEecchhhHHHHHHHHHHCCCCeE-Eec
Q 002515 352 ------LGRPVLVGSTSVENSEYLSDLLKQQGIPHN-VLN 384 (913)
Q Consensus 352 ------~grPVLI~t~Si~~SE~ls~~L~~~gi~~~-vLn 384 (913)
++.=+|+|.-+......|.++|++.|++.+ ++-
T Consensus 147 ~~~~~~~~~vniiG~~~~~d~~elk~lL~~~Gi~v~~~lp 186 (407)
T TIGR01279 147 EAPASEQRALVLVGSVNDIVADQLRLELKQLGIPVVGFLP 186 (407)
T ss_pred cccCCCCCcEEEEeccChhhHHHHHHHHHHcCCeEEEEeC
Confidence 123367777777777899999999999987 664
No 445
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=24.47 E-value=1.2e+02 Score=36.76 Aligned_cols=34 Identities=18% Similarity=0.247 Sum_probs=19.7
Q ss_pred cchhhHHHHhhccchhhhhccCCCCceEEEeecchhh
Q 002515 101 ELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV 137 (913)
Q Consensus 101 e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsi 137 (913)
..+.|-+|+-+..-....+.. ...++||||||.+
T Consensus 107 ~~~vd~Ir~iie~a~~~P~~~---~~KVvIIDEa~~L 140 (507)
T PRK06645 107 KTSVDDIRRIIESAEYKPLQG---KHKIFIIDEVHML 140 (507)
T ss_pred CCCHHHHHHHHHHHHhccccC---CcEEEEEEChhhc
Confidence 345566666443211112233 6789999999975
No 446
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=24.30 E-value=2.2e+02 Score=35.03 Aligned_cols=60 Identities=18% Similarity=0.243 Sum_probs=45.0
Q ss_pred HHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHHhcc------CCCeEEECC
Q 002515 36 AYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNY------RCDITYTNN 99 (913)
Q Consensus 36 a~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLsv~~i~~~~~~~~r~~aY------~~DI~YgT~ 99 (913)
.++....++.+.|+|.+...|++-++.+ ...|+.+.++.++++..+|.... ..+|+.+|.
T Consensus 250 ~ll~~~~~~k~LVF~nt~~~ae~l~~~L----~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTd 315 (572)
T PRK04537 250 GLLSRSEGARTMVFVNTKAFVERVARTL----ERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATD 315 (572)
T ss_pred HHHhcccCCcEEEEeCCHHHHHHHHHHH----HHcCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEeh
Confidence 3334456789999999987777655544 45689999999999998887644 358888885
No 447
>PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen). Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A.
Probab=24.30 E-value=1e+02 Score=36.18 Aligned_cols=88 Identities=19% Similarity=0.072 Sum_probs=50.2
Q ss_pred hCCCeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHHHhcCCcEEEEecch------hhHHHHHHHHHHCCCCeEE
Q 002515 309 FQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSV------ENSEYLSDLLKQQGIPHNV 382 (913)
Q Consensus 309 Y~l~vv~IPt~~p~~R~d~~d~v~~t~~~k~~aii~ei~~~~~~grPVLI~t~Si------~~SE~ls~~L~~~gi~~~v 382 (913)
=|+.+++||+- ..+|.+. |..+..++++++. -...-.+++-|.|. ...+.++++-++.||||-+
T Consensus 121 AGl~~~vV~~~------~~~d~l~-td~~~ie~~i~~~---G~~~iLcvltttscfapr~~D~i~~IakiC~~~~IPhlv 190 (389)
T PF05889_consen 121 AGLEPVVVENV------LEGDELI-TDLEAIEAKIEEL---GADNILCVLTTTSCFAPRLPDDIEEIAKICKEYDIPHLV 190 (389)
T ss_dssp TT-EEEEE-EE------EETTEEE-EHHHHHHHHHHHH---CGGGEEEEEEESSTTTTB----HHHHHHHHHHHT--EEE
T ss_pred cCCeEEEeecc------CCCCeee-ccHHHHHHHHHHh---CCCCeEEEEEecCccCCCCCccHHHHHHHHHHcCCceEE
Confidence 48889999972 2456544 4444444444332 22223344444443 2378999999999999999
Q ss_pred eccCCcchhhHHHHHHhcCCCccE
Q 002515 383 LNARPKYAAREAETVAQAGRKYAI 406 (913)
Q Consensus 383 LnA~~k~~~~Ea~Iia~AG~~G~V 406 (913)
=||..-|..+=-+.|.+|.+.|+|
T Consensus 191 NnAYgvQ~~~~~~~i~~a~~~GRv 214 (389)
T PF05889_consen 191 NNAYGVQSSKCMHLIQQAWRVGRV 214 (389)
T ss_dssp EGTTTTT-HHHHHHHHHHHHHSTC
T ss_pred ccchhhhHHHHHHHHHHHHhcCCc
Confidence 888644444445677788766655
No 448
>PRK05177 minC septum formation inhibitor; Reviewed
Probab=24.26 E-value=42 Score=36.54 Aligned_cols=44 Identities=41% Similarity=0.673 Sum_probs=39.1
Q ss_pred chhhhhcCceEEEeccCCCchhhHhhhhcc--cccCCCCCceeEEEeccchhhhhcc
Q 002515 551 GSEVKRLGGLHVIGTSLHESRRIDNQLRGR--AGRQGDPGSTRFMVSLQDEMFQKFS 605 (913)
Q Consensus 551 ~~~V~~~GGL~VIgTerhes~RiD~QLrGR--agRQGdpGss~f~lSLeD~l~~~f~ 605 (913)
..+|.+-|=.||.|+ |||| ||=+||.....|..+|+=+++++-|
T Consensus 162 GAEViA~GnI~VyG~-----------LRG~a~AG~~Gd~~A~I~a~~l~pelvsIag 207 (239)
T PRK05177 162 GAEVVAGGSIHVYGA-----------LRGRAIAGAAGNPSARIFCRKLEAELLAIDG 207 (239)
T ss_pred CCEEEeCCCEEEEEE-----------cceEEEeCCCCCCccEEEeccCCceEEEEee
Confidence 568889999999998 6676 7999999999999999999999855
No 449
>PTZ00007 (NAP-L) nucleosome assembly protein -L; Provisional
Probab=24.21 E-value=1.8e+02 Score=33.48 Aligned_cols=46 Identities=20% Similarity=0.206 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcc
Q 002515 632 VRQLLGLQISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSILTG 677 (913)
Q Consensus 632 ~~~i~~aQ~~~E~~~~~~Rk~l~~yd~v~~~QR~~IY~~R~~iL~~ 677 (913)
...|...|......+-+..+.+++...--+.+++-+|..|+.|+.|
T Consensus 43 v~aL~~lQ~e~~~le~ef~~ev~~LE~kY~~~~~Ply~kR~eII~G 88 (337)
T PTZ00007 43 LKKLQLLQKEFDDLEVEYNAELRKLRSKYEDLYNPIYDKRKEALVQ 88 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHcC
Confidence 3457888999999888888889988888889999999999999986
No 450
>PTZ00035 Rad51 protein; Provisional
Probab=24.15 E-value=1.6e+02 Score=33.75 Aligned_cols=102 Identities=19% Similarity=0.258 Sum_probs=48.9
Q ss_pred cCCeEEe--cCCCchHHHHHHHHHHHHH------cCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHH
Q 002515 16 DGSIAEM--KTGEGKTLVSTLAAYLNAL------TGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERR 87 (913)
Q Consensus 16 ~G~IaEm--~TGEGKTLva~lpa~l~AL------~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLsv~~i~~~~~~~~r~ 87 (913)
.|.|.++ ..|.|||..+...++...+ .|.+|..|.....+.. +.+..+.+.+|+...
T Consensus 117 ~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~---eri~~ia~~~g~~~~------------ 181 (337)
T PTZ00035 117 TGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRP---ERIVQIAERFGLDPE------------ 181 (337)
T ss_pred CCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCH---HHHHHHHHHhCCChH------------
Confidence 4555554 6899999876655543333 2334533333222221 224444555554321
Q ss_pred hccCCCeEEECCCcchhhHHHHhhccchhhhhccCCCCceEEEeecchhhh
Q 002515 88 SNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (913)
Q Consensus 88 ~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiL 138 (913)
..-..|.|..... .+.+.+.+..-....... ++..+|||=+-+++
T Consensus 182 -~~l~nI~~~~~~~--~e~~~~~l~~~~~~l~~~---~~~lvVIDSital~ 226 (337)
T PTZ00035 182 -DVLDNIAYARAYN--HEHQMQLLSQAAAKMAEE---RFALLIVDSATALF 226 (337)
T ss_pred -hHhhceEEEccCC--HHHHHHHHHHHHHHhhcc---CccEEEEECcHHhh
Confidence 1112356655433 223333332111111223 67899998887765
No 451
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=23.96 E-value=1e+02 Score=39.32 Aligned_cols=13 Identities=23% Similarity=0.629 Sum_probs=11.8
Q ss_pred CceEEEeecchhh
Q 002515 125 PFHFAIVDEVDSV 137 (913)
Q Consensus 125 ~~~~aIVDEvDsi 137 (913)
+..++++||+|.+
T Consensus 557 p~sVlllDEieka 569 (758)
T PRK11034 557 PHAVLLLDEIEKA 569 (758)
T ss_pred CCcEEEeccHhhh
Confidence 6789999999997
No 452
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=23.84 E-value=2.5e+02 Score=32.65 Aligned_cols=58 Identities=12% Similarity=0.055 Sum_probs=43.1
Q ss_pred HHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHHhcc------CCCeEEECC
Q 002515 38 LNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNY------RCDITYTNN 99 (913)
Q Consensus 38 l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLsv~~i~~~~~~~~r~~aY------~~DI~YgT~ 99 (913)
+....+..+.|.+.+..-+++-++. +...|++++.+.++++.++|.... .++|+.+|+
T Consensus 250 l~~~~~~~~lVF~~t~~~~~~l~~~----L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd 313 (423)
T PRK04837 250 IEEEWPDRAIIFANTKHRCEEIWGH----LAADGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATD 313 (423)
T ss_pred HHhcCCCeEEEEECCHHHHHHHHHH----HHhCCCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEec
Confidence 3334467899999998766554444 456799999999999988887544 358999995
No 453
>PF00956 NAP: Nucleosome assembly protein (NAP); InterPro: IPR002164 It is thought that NAPs act as histone chaperones, shuttling both core and linker histones from their site of synthesis in the cytoplasm to the nucleus. The proteins may be involved in regulating gene expression and therefore cellular differentiation [, ]. The centrosomal protein c-Nap1, also known as Cep250, has been implicated in the cell-cycle-regulated cohesion of microtubule-organizing centres. This 281 kDa protein consists mainly of domains predicted to form coiled coil structures. The C-terminal region defines a novel histone-binding domain that is responsible for targeting CNAP1, and possibly condensin, to mitotic chromosomes []. During interphase, C-Nap1 localizes to the proximal ends of both parental centrioles, but it dissociates from these structures at the onset of mitosis. Re-association with centrioles then occurs in late telophase or at the very beginning of G1 phase, when daughter cells are still connected by post-mitotic bridges. Electron microscopic studies performed on isolated centrosomes suggest that a proteinaceous linker connects parental centrioles and C-Nap1 may be part of a linker structure that assures the cohesion of duplicated centrosomes during interphase, but that is dismantled upon centrosome separation at the onset of mitosis []. ; GO: 0006334 nucleosome assembly, 0005634 nucleus; PDB: 2E50_Q 2Z2R_A 2AYU_A 3Q66_A 3C9B_A 3Q68_B 3Q33_B 2ZD7_B 3DM7_A 3C9D_A ....
Probab=23.79 E-value=2.2e+02 Score=30.89 Aligned_cols=46 Identities=20% Similarity=0.289 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccC
Q 002515 633 RQLLGLQISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSILTGA 678 (913)
Q Consensus 633 ~~i~~aQ~~~E~~~~~~Rk~l~~yd~v~~~QR~~IY~~R~~iL~~~ 678 (913)
.++...|.++...+-...+...+...--+.+++-+|..|+.|+.|.
T Consensus 5 ~~L~~~q~~~~~l~~~~~~e~~~le~ky~~~~~pl~~kR~~ii~g~ 50 (244)
T PF00956_consen 5 EALKKLQEELDELEKEFEEEIHELERKYNKLYKPLYEKRREIINGK 50 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhccc
Confidence 3577888888888888888888888888899999999999999874
No 454
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=23.73 E-value=1.2e+02 Score=36.51 Aligned_cols=13 Identities=31% Similarity=0.580 Sum_probs=11.6
Q ss_pred CceEEEeecchhh
Q 002515 125 PFHFAIVDEVDSV 137 (913)
Q Consensus 125 ~~~~aIVDEvDsi 137 (913)
...++||||+|.+
T Consensus 117 ~~kVvIIDE~h~L 129 (472)
T PRK14962 117 KYKVYIIDEVHML 129 (472)
T ss_pred CeEEEEEEChHHh
Confidence 6789999999987
No 455
>PRK10689 transcription-repair coupling factor; Provisional
Probab=23.59 E-value=2.7e+02 Score=37.32 Aligned_cols=79 Identities=14% Similarity=0.133 Sum_probs=54.2
Q ss_pred HcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHHhcc------CCCeEEECCCcchhhHHHHhhccc
Q 002515 41 LTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNY------RCDITYTNNSELGFDYLRDNLAAN 114 (913)
Q Consensus 41 L~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLsv~~i~~~~~~~~r~~aY------~~DI~YgT~~e~~fDyLrD~l~~~ 114 (913)
..|..|.|++++-.-+.+-++.+...+. ++.|+++.++|+..+|..+. ..||+.||.- + ..
T Consensus 807 ~r~gqv~vf~n~i~~ie~la~~L~~~~p--~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdI------i----er- 873 (1147)
T PRK10689 807 LRGGQVYYLYNDVENIQKAAERLAELVP--EARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTI------I----ET- 873 (1147)
T ss_pred hcCCeEEEEECCHHHHHHHHHHHHHhCC--CCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECch------h----hc-
Confidence 4567899999887666555555554432 67888899999998887653 3699999951 1 11
Q ss_pred hhhhhccCCCCceEEEeecchhh
Q 002515 115 SEQLVMRWPKPFHFAIVDEVDSV 137 (913)
Q Consensus 115 ~~~~v~r~~R~~~~aIVDEvDsi 137 (913)
....+ ..+++||+.+|..
T Consensus 874 --GIDIP---~v~~VIi~~ad~f 891 (1147)
T PRK10689 874 --GIDIP---TANTIIIERADHF 891 (1147)
T ss_pred --ccccc---cCCEEEEecCCCC
Confidence 12334 7788998888763
No 456
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=23.38 E-value=58 Score=41.55 Aligned_cols=33 Identities=21% Similarity=0.230 Sum_probs=24.6
Q ss_pred CCchhHHHHHHHHh------cCCeEEecCCCchHHHHHH
Q 002515 2 RHFDVQIIGGAVLH------DGSIAEMKTGEGKTLVSTL 34 (913)
Q Consensus 2 rp~dvQl~g~l~L~------~G~IaEm~TGEGKTLva~l 34 (913)
.||++|+.=..-+. +.-+.|-.||.||||..+.
T Consensus 21 qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLC 59 (945)
T KOG1132|consen 21 QPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLC 59 (945)
T ss_pred CcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHH
Confidence 58999987666432 2349999999999986443
No 457
>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....
Probab=23.14 E-value=2.1e+02 Score=28.48 Aligned_cols=76 Identities=20% Similarity=0.201 Sum_probs=54.3
Q ss_pred ccccCCCcccHHHHHHHHhCCCeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHH
Q 002515 291 LSGMTGTAKTEEKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLS 370 (913)
Q Consensus 291 L~GmTGTa~te~~Ef~~iY~l~vv~IPt~~p~~R~d~~d~v~~t~~~k~~aii~ei~~~~~~grPVLI~t~Si~~SE~ls 370 (913)
|.|-||..|+..-+..+-+.-++- .+-.+....+..+.+++.+. +|-.|...+.+..+.+.
T Consensus 3 ILGsTGSIG~qtLdVi~~~~d~f~---------------v~~Lsa~~n~~~L~~q~~~f----~p~~v~i~~~~~~~~l~ 63 (129)
T PF02670_consen 3 ILGSTGSIGTQTLDVIRKHPDKFE---------------VVALSAGSNIEKLAEQAREF----KPKYVVIADEEAYEELK 63 (129)
T ss_dssp EESTTSHHHHHHHHHHHHCTTTEE---------------EEEEEESSTHHHHHHHHHHH----T-SEEEESSHHHHHHHH
T ss_pred EEcCCcHHHHHHHHHHHhCCCceE---------------EEEEEcCCCHHHHHHHHHHh----CCCEEEEcCHHHHHHHH
Confidence 689999999987666555531111 11234455566777777665 48889999999999999
Q ss_pred HHHHHCCCCeEEecc
Q 002515 371 DLLKQQGIPHNVLNA 385 (913)
Q Consensus 371 ~~L~~~gi~~~vLnA 385 (913)
..|...+....++.+
T Consensus 64 ~~~~~~~~~~~v~~G 78 (129)
T PF02670_consen 64 KALPSKGPGIEVLSG 78 (129)
T ss_dssp HHHHHTTSSSEEEES
T ss_pred HHhhhcCCCCEEEeC
Confidence 999888888888887
No 458
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=23.12 E-value=1.4e+02 Score=37.10 Aligned_cols=35 Identities=26% Similarity=0.373 Sum_probs=20.4
Q ss_pred CcchhhHHHHhhccchhhhhccCCCCceEEEeecchhh
Q 002515 100 SELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV 137 (913)
Q Consensus 100 ~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsi 137 (913)
+..+.|-+|+-+..-....+.. +..++||||||.|
T Consensus 110 s~~gvd~IReIie~~~~~P~~a---~~KVvIIDEad~L 144 (598)
T PRK09111 110 SHTGVDDIREIIESVRYRPVSA---RYKVYIIDEVHML 144 (598)
T ss_pred ccCCHHHHHHHHHHHHhchhcC---CcEEEEEEChHhC
Confidence 3455676665432111112333 6789999999987
No 459
>PRK10436 hypothetical protein; Provisional
Probab=23.10 E-value=1.2e+02 Score=36.43 Aligned_cols=37 Identities=27% Similarity=0.421 Sum_probs=25.8
Q ss_pred hcCC-eEEecCCCchHHHHHHHHHHHHHcCCcEEEEecCH
Q 002515 15 HDGS-IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVND 53 (913)
Q Consensus 15 ~~G~-IaEm~TGEGKTLva~lpa~l~AL~G~~VhVvT~Nd 53 (913)
.+|- ++--.||+|||-+. -+.+..+.....+|+|.-|
T Consensus 217 ~~GliLvtGpTGSGKTTtL--~a~l~~~~~~~~~i~TiED 254 (462)
T PRK10436 217 PQGLILVTGPTGSGKTVTL--YSALQTLNTAQINICSVED 254 (462)
T ss_pred cCCeEEEECCCCCChHHHH--HHHHHhhCCCCCEEEEecC
Confidence 4576 67889999999764 2234556556789999754
No 460
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=22.84 E-value=1.5e+02 Score=31.49 Aligned_cols=35 Identities=29% Similarity=0.321 Sum_probs=21.6
Q ss_pred hcCCeEEecC--CCchHHHHHHHHHHHHHcCCcEEEEe
Q 002515 15 HDGSIAEMKT--GEGKTLVSTLAAYLNALTGEGVHVVT 50 (913)
Q Consensus 15 ~~G~IaEm~T--GEGKTLva~lpa~l~AL~G~~VhVvT 50 (913)
..| .+++-| |-|||-+|.--++-.+-.|..|.||=
T Consensus 21 ~~g-~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQ 57 (191)
T PRK05986 21 EKG-LLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQ 57 (191)
T ss_pred cCC-eEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEE
Confidence 344 444544 55667665555555667899998763
No 461
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=22.72 E-value=1.5e+02 Score=36.34 Aligned_cols=45 Identities=24% Similarity=0.363 Sum_probs=25.5
Q ss_pred CCCeEEECCC-cchhhHHHHhhccchhhhhccCCCCceEEEeecchhhh
Q 002515 91 RCDITYTNNS-ELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (913)
Q Consensus 91 ~~DI~YgT~~-e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiL 138 (913)
..|+..+..+ .-+.|-+|+.+....-..... +..++||||||.|-
T Consensus 85 h~dv~eldaas~~gId~IRelie~~~~~P~~~---~~KVvIIDEad~Lt 130 (535)
T PRK08451 85 HIDIIEMDAASNRGIDDIRELIEQTKYKPSMA---RFKIFIIDEVHMLT 130 (535)
T ss_pred CCeEEEeccccccCHHHHHHHHHHHhhCcccC---CeEEEEEECcccCC
Confidence 3344444322 246788887664311011222 67899999999873
No 462
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=22.70 E-value=1.3e+02 Score=36.90 Aligned_cols=13 Identities=23% Similarity=0.542 Sum_probs=11.6
Q ss_pred CceEEEeecchhh
Q 002515 125 PFHFAIVDEVDSV 137 (913)
Q Consensus 125 ~~~~aIVDEvDsi 137 (913)
+..++||||||.|
T Consensus 119 ~~kViIIDEa~~l 131 (546)
T PRK14957 119 RYKVYLIDEVHML 131 (546)
T ss_pred CcEEEEEechhhc
Confidence 6789999999986
No 463
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=22.64 E-value=2.5e+02 Score=33.68 Aligned_cols=34 Identities=24% Similarity=0.185 Sum_probs=27.2
Q ss_pred eEEecCCCchHHHHHHHHHHHHHcCCcEEEEecC
Q 002515 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVN 52 (913)
Q Consensus 19 IaEm~TGEGKTLva~lpa~l~AL~G~~VhVvT~N 52 (913)
++.=.+|.|||..++--++-.|-.|.+|..++.=
T Consensus 267 li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~e 300 (484)
T TIGR02655 267 LATGATGTGKTLLVSKFLENACANKERAILFAYE 300 (484)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEee
Confidence 6677899999998888887666778888887753
No 464
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=22.64 E-value=88 Score=32.45 Aligned_cols=28 Identities=32% Similarity=0.369 Sum_probs=16.7
Q ss_pred ecCCCchHHHHHHHHHHHHHcCCcEEEEe
Q 002515 22 MKTGEGKTLVSTLAAYLNALTGEGVHVVT 50 (913)
Q Consensus 22 m~TGEGKTLva~lpa~l~AL~G~~VhVvT 50 (913)
=..|+|||+-++.-.++.+|. ++..|+|
T Consensus 7 G~pGsGKS~~av~~~i~~~l~-~gr~V~t 34 (193)
T PF05707_consen 7 GKPGSGKSYYAVSYVIIPALK-KGRPVYT 34 (193)
T ss_dssp --TTSSHHHHHHHHHHH-GGG-S---EEE
T ss_pred cCCCCcHhHHHHHHHHHHHHh-CCCEEEE
Confidence 357999999777765556665 5777888
No 465
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=22.55 E-value=3.4e+02 Score=24.61 Aligned_cols=36 Identities=17% Similarity=0.124 Sum_probs=29.9
Q ss_pred hcCCcEEEEecchhhHHHHHHHHHHCCCC-eEEeccC
Q 002515 351 RLGRPVLVGSTSVENSEYLSDLLKQQGIP-HNVLNAR 386 (913)
Q Consensus 351 ~~grPVLI~t~Si~~SE~ls~~L~~~gi~-~~vLnA~ 386 (913)
..++||+|.|.+-..|...+..|.+.|++ ..+|.++
T Consensus 56 ~~~~~vv~~c~~g~rs~~~~~~l~~~G~~~v~~l~GG 92 (101)
T cd01528 56 NPDKDIVVLCHHGGRSMQVAQWLLRQGFENVYNLQGG 92 (101)
T ss_pred CCCCeEEEEeCCCchHHHHHHHHHHcCCccEEEecCC
Confidence 35889999999988999999999999986 4466664
No 466
>PRK14805 ornithine carbamoyltransferase; Provisional
Probab=22.41 E-value=4e+02 Score=30.18 Aligned_cols=88 Identities=17% Similarity=0.188 Sum_probs=54.8
Q ss_pred CchhHHHHHHH-H--hcCC-----eEEecCCCchHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHH-HHHHHHhhhcCCe
Q 002515 3 HFDVQIIGGAV-L--HDGS-----IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDA-EWMERVHRFLGLS 73 (913)
Q Consensus 3 p~dvQl~g~l~-L--~~G~-----IaEm~TGEGKTLva~lpa~l~AL~G~~VhVvT~NdyLA~RDa-e~~~~~y~~LGLs 73 (913)
-+|+|.++=+. + +.|. |+=+ |-|+..+-.+... .+..|-.|.+++|-.+.-..+. ++...+.+..|.+
T Consensus 126 ~HPtQaL~Dl~Ti~e~~g~l~g~kva~v--GD~~~v~~S~~~~-~~~~g~~v~~~~P~~~~~~~~~~~~a~~~~~~~g~~ 202 (302)
T PRK14805 126 YHPCQALADFLTLAEQFGDVSKVKLAYV--GDGNNVTHSLMYG-AAILGATMTVICPPGHFPDGQIVAEAQELAAKSGGK 202 (302)
T ss_pred CChHHHHHHHHHHHHHhCCcCCcEEEEE--cCCCccHHHHHHH-HHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCE
Confidence 47999988763 2 2343 5555 6666544333333 3455999999999887665443 2334556667877
Q ss_pred EEEEcCCCCHHHHHhccCCCeEEECC
Q 002515 74 VGLIQRGMIPEERRSNYRCDITYTNN 99 (913)
Q Consensus 74 v~~i~~~~~~~~r~~aY~~DI~YgT~ 99 (913)
+.+.. + . ...-+|||+|.+.
T Consensus 203 ~~~~~-d--~---~a~~~aDvvy~~~ 222 (302)
T PRK14805 203 LVLTS-D--I---EAIEGHDAIYTDT 222 (302)
T ss_pred EEEEc-C--H---HHHCCCCEEEeec
Confidence 65432 2 1 1345899999965
No 467
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=22.36 E-value=3.4e+02 Score=30.58 Aligned_cols=119 Identities=18% Similarity=0.316 Sum_probs=65.3
Q ss_pred ccccCCCcccHHHHHH---HHhCCC-eEEeCCC--CCcc------------cccCCCeEEeChhH-HHHHHHHHHHHHHh
Q 002515 291 LSGMTGTAKTEEKEFL---KMFQMP-VIEVPTN--LPNI------------RVDLPIQSFATARG-KWEYARQEVESMFR 351 (913)
Q Consensus 291 L~GmTGTa~te~~Ef~---~iY~l~-vv~IPt~--~p~~------------R~d~~d~v~~t~~~-k~~aii~ei~~~~~ 351 (913)
++|..++.-.++-|+. +-.|.+ +.++||. +|.. ..++|-.+|-...- ...--.+.+.+..
T Consensus 77 iaG~g~~~t~eai~lak~a~~~Gad~il~v~PyY~k~~~~gl~~hf~~ia~a~~lPvilYN~P~~tg~~l~~e~i~~la- 155 (299)
T COG0329 77 IAGVGSNSTAEAIELAKHAEKLGADGILVVPPYYNKPSQEGLYAHFKAIAEAVDLPVILYNIPSRTGVDLSPETIARLA- 155 (299)
T ss_pred EEecCCCcHHHHHHHHHHHHhcCCCEEEEeCCCCcCCChHHHHHHHHHHHHhcCCCEEEEeCccccCCCCCHHHHHHHh-
Confidence 5565555555565654 456877 5677874 3432 23445444431110 1111122333332
Q ss_pred cCCcEEEEecchh-hHHHHHHHHHHCCC-CeEEeccCCcchhhHHHHHHhcCCCccEEEEcCCCCC
Q 002515 352 LGRPVLVGSTSVE-NSEYLSDLLKQQGI-PHNVLNARPKYAAREAETVAQAGRKYAITISTNMAGR 415 (913)
Q Consensus 352 ~grPVLI~t~Si~-~SE~ls~~L~~~gi-~~~vLnA~~k~~~~Ea~Iia~AG~~G~VTIATnmAGR 415 (913)
. -|.+|+...-. ....+.++....+. ...++.+. ++.=..... .|-.|.|.++.|.+++
T Consensus 156 ~-~~nivgiKd~~gd~~~~~~~~~~~~~~~f~v~~G~---d~~~~~~~~-~G~~G~is~~~N~~p~ 216 (299)
T COG0329 156 E-HPNIVGVKDSSGDLDRLEEIIAALGDRDFIVLSGD---DELALPALL-LGADGVISVTANVAPE 216 (299)
T ss_pred c-CCCEEEEEeCCcCHHHHHHHHHhcCccCeeEEeCc---hHHHHHHHh-CCCCeEEecccccCHH
Confidence 2 57777776444 45566666666666 67888873 232233333 7889999999998764
No 468
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=22.27 E-value=2.1e+02 Score=35.31 Aligned_cols=61 Identities=13% Similarity=0.089 Sum_probs=45.7
Q ss_pred HHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHHhccC------CCeEEECCC
Q 002515 36 AYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNYR------CDITYTNNS 100 (913)
Q Consensus 36 a~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLsv~~i~~~~~~~~r~~aY~------~DI~YgT~~ 100 (913)
.++..-.|+.+.|.|.+..-+ +++...+...|++++.+.+++++++|....+ .+|+.+|+.
T Consensus 229 ~~l~~~~~~~~IIFc~tr~~~----e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a 295 (607)
T PRK11057 229 RYVQEQRGKSGIIYCNSRAKV----EDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVA 295 (607)
T ss_pred HHHHhcCCCCEEEEECcHHHH----HHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEech
Confidence 344455678888999886544 5555666678999999999999998875442 589999974
No 469
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=22.01 E-value=3e+02 Score=31.78 Aligned_cols=28 Identities=7% Similarity=0.061 Sum_probs=21.9
Q ss_pred CceEEEeecchhhhhccCCCceeccCCCCCCccchHHHHHHHHHhccC
Q 002515 125 PFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQG 172 (913)
Q Consensus 125 ~~~~aIVDEvDsiLiDea~tPLiiSg~~~~~~~~y~~~~~~v~~l~~~ 172 (913)
+..++|||+||.|- -..++.+.+.|+++
T Consensus 132 ~~kV~iI~~ae~m~--------------------~~AaNaLLKtLEEP 159 (342)
T PRK06964 132 GARVVVLYPAEALN--------------------VAAANALLKTLEEP 159 (342)
T ss_pred CceEEEEechhhcC--------------------HHHHHHHHHHhcCC
Confidence 67899999999983 13577888888764
No 470
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=21.96 E-value=2.6e+02 Score=32.31 Aligned_cols=13 Identities=23% Similarity=0.580 Sum_probs=11.9
Q ss_pred CceEEEeecchhh
Q 002515 125 PFHFAIVDEVDSV 137 (913)
Q Consensus 125 ~~~~aIVDEvDsi 137 (913)
+..++||||||.|
T Consensus 141 ~~rVviIDeAd~l 153 (351)
T PRK09112 141 NWRIVIIDPADDM 153 (351)
T ss_pred CceEEEEEchhhc
Confidence 6789999999997
No 471
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=21.84 E-value=2.4e+02 Score=28.50 Aligned_cols=58 Identities=16% Similarity=0.169 Sum_probs=35.8
Q ss_pred CCeEEECCC----cchhhHHHHhhccchhhhhccCCCCceEEEeecchhhhhccCCCceeccCCCCCCccchHHHHHHHH
Q 002515 92 CDITYTNNS----ELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAE 167 (913)
Q Consensus 92 ~DI~YgT~~----e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~tPLiiSg~~~~~~~~y~~~~~~v~ 167 (913)
.|+.+..+. .++.|-.|+-...-....... +..++||||||.|-. ...+.+.+
T Consensus 68 ~d~~~~~~~~~~~~i~i~~ir~i~~~~~~~~~~~---~~KviiI~~ad~l~~--------------------~a~NaLLK 124 (162)
T PF13177_consen 68 PDFIIIKPDKKKKSIKIDQIREIIEFLSLSPSEG---KYKVIIIDEADKLTE--------------------EAQNALLK 124 (162)
T ss_dssp TTEEEEETTTSSSSBSHHHHHHHHHHCTSS-TTS---SSEEEEEETGGGS-H--------------------HHHHHHHH
T ss_pred cceEEEecccccchhhHHHHHHHHHHHHHHHhcC---CceEEEeehHhhhhH--------------------HHHHHHHH
Confidence 477766665 467777774332211111123 789999999999842 35677888
Q ss_pred HhccC
Q 002515 168 LLVQG 172 (913)
Q Consensus 168 ~l~~~ 172 (913)
.|++.
T Consensus 125 ~LEep 129 (162)
T PF13177_consen 125 TLEEP 129 (162)
T ss_dssp HHHST
T ss_pred HhcCC
Confidence 88764
No 472
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=21.80 E-value=4e+02 Score=30.64 Aligned_cols=88 Identities=15% Similarity=0.185 Sum_probs=52.1
Q ss_pred CchhHHHHHH-HHh--cC-C-----eEEecCCCchHHH--HHHHHHHHHHcCCcEEEEecCHHHHHHHH-HHHHHHhhhc
Q 002515 3 HFDVQIIGGA-VLH--DG-S-----IAEMKTGEGKTLV--STLAAYLNALTGEGVHVVTVNDYLAQRDA-EWMERVHRFL 70 (913)
Q Consensus 3 p~dvQl~g~l-~L~--~G-~-----IaEm~TGEGKTLv--a~lpa~l~AL~G~~VhVvT~NdyLA~RDa-e~~~~~y~~L 70 (913)
-+|+|.++=+ .+. .| . |+=+ |-||.-| ..+.+ .+..|-.|.+++|-.|+-..+. +....+.+..
T Consensus 134 ~HPtQaL~Dl~Ti~e~~g~~l~gl~ia~v--GD~~~~v~~Sl~~~--~~~~g~~v~~~~P~~~~p~~~~~~~~~~~~~~~ 209 (334)
T PRK01713 134 FHPTQMLADVLTMIENCDKPLSEISYVYI--GDARNNMGNSLLLI--GAKLGMDVRICAPKALLPEASLVEMCEKFAKES 209 (334)
T ss_pred CChHHHHHHHHHHHHHcCCCcCCcEEEEE--CCCccCHHHHHHHH--HHHcCCEEEEECCchhcCCHHHHHHHHHHHHHc
Confidence 4799998875 332 33 2 5544 6665432 22222 3455999999999888655433 2334455566
Q ss_pred CCeEEEEcCCCCHHHHHhccCCCeEEECC
Q 002515 71 GLSVGLIQRGMIPEERRSNYRCDITYTNN 99 (913)
Q Consensus 71 GLsv~~i~~~~~~~~r~~aY~~DI~YgT~ 99 (913)
|.++.+. .+ + ....-+|||+|++.
T Consensus 210 g~~~~~~-~d--~--~~a~~~aDvVyt~~ 233 (334)
T PRK01713 210 GARITVT-DD--I--DKAVKGVDFVHTDV 233 (334)
T ss_pred CCeEEEE-cC--H--HHHhCCCCEEEEcc
Confidence 8776543 22 1 23345799999974
No 473
>PF06823 DUF1236: Protein of unknown function (DUF1236); InterPro: IPR009642 This family contains a number of hypothetical bacterial proteins of unknown function. Some family members contain more than one copy of the region represented by this family.
Probab=21.73 E-value=79 Score=27.86 Aligned_cols=22 Identities=32% Similarity=0.526 Sum_probs=19.4
Q ss_pred CcceEEECCeEEEEeCCCCccc
Q 002515 227 DVQYIVRNGKALIINELTGRVE 248 (913)
Q Consensus 227 d~dYiV~dg~V~iVD~~TGR~~ 248 (913)
+-.|++.||+++|||..|.|+.
T Consensus 40 ~Y~Y~~v~~~~ViVdP~Tr~VV 61 (65)
T PF06823_consen 40 GYRYVVVNDRIVIVDPRTRRVV 61 (65)
T ss_pred CceEEEECCEEEEEcCCCCEEE
Confidence 5579999999999999998874
No 474
>PF09413 DUF2007: Domain of unknown function (DUF2007); InterPro: IPR018551 This is a family of proteins with unknown function. ; PDB: 2HFV_A.
Probab=21.69 E-value=1e+02 Score=26.25 Aligned_cols=29 Identities=31% Similarity=0.431 Sum_probs=20.1
Q ss_pred EEEecchhhHHHHHHHHHHCCCCeEEecc
Q 002515 357 LVGSTSVENSEYLSDLLKQQGIPHNVLNA 385 (913)
Q Consensus 357 LI~t~Si~~SE~ls~~L~~~gi~~~vLnA 385 (913)
|..|.+.-+++.+...|.+.||++.+.|.
T Consensus 3 l~~~~~~~ea~~i~~~L~~~gI~~~v~~~ 31 (67)
T PF09413_consen 3 LYTAGDPIEAELIKGLLEENGIPAFVKNE 31 (67)
T ss_dssp EEEE--HHHHHHHHHHHHHTT--EE--S-
T ss_pred EEEcCCHHHHHHHHHHHHhCCCcEEEECC
Confidence 66788899999999999999999998775
No 475
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=21.65 E-value=1.2e+02 Score=33.33 Aligned_cols=13 Identities=15% Similarity=0.286 Sum_probs=11.0
Q ss_pred CceEEEeecchhh
Q 002515 125 PFHFAIVDEVDSV 137 (913)
Q Consensus 125 ~~~~aIVDEvDsi 137 (913)
...+++|||+|.+
T Consensus 81 ~~~vl~iDEi~~l 93 (305)
T TIGR00635 81 EGDVLFIDEIHRL 93 (305)
T ss_pred cCCEEEEehHhhh
Confidence 4579999999986
No 476
>PRK06893 DNA replication initiation factor; Validated
Probab=21.58 E-value=1.6e+02 Score=31.48 Aligned_cols=76 Identities=12% Similarity=0.043 Sum_probs=0.0
Q ss_pred ccccCCCccc-----HHHHHHHHhCCCeEEeCCC-------CCcccccCCCeEEeChhHHHH-------HHHHHHHHHHh
Q 002515 291 LSGMTGTAKT-----EEKEFLKMFQMPVIEVPTN-------LPNIRVDLPIQSFATARGKWE-------YARQEVESMFR 351 (913)
Q Consensus 291 L~GmTGTa~t-----e~~Ef~~iY~l~vv~IPt~-------~p~~R~d~~d~v~~t~~~k~~-------aii~ei~~~~~ 351 (913)
|+|-+||.+| -+.++.+- +.++..+|.+ .-..+....+.++.++-.... ++..-+...++
T Consensus 44 l~G~~G~GKThL~~ai~~~~~~~-~~~~~y~~~~~~~~~~~~~~~~~~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~ 122 (229)
T PRK06893 44 IWGGKSSGKSHLLKAVSNHYLLN-QRTAIYIPLSKSQYFSPAVLENLEQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKE 122 (229)
T ss_pred EECCCCCCHHHHHHHHHHHHHHc-CCCeEEeeHHHhhhhhHHHHhhcccCCEEEEeChhhhcCChHHHHHHHHHHHHHHH
Q ss_pred cCCcEEEEecchhhHH
Q 002515 352 LGRPVLVGSTSVENSE 367 (913)
Q Consensus 352 ~grPVLI~t~Si~~SE 367 (913)
.|.+++|+|.+..-++
T Consensus 123 ~~~~illits~~~p~~ 138 (229)
T PRK06893 123 QGKTLLLISADCSPHA 138 (229)
T ss_pred cCCcEEEEeCCCChHH
No 477
>PRK04328 hypothetical protein; Provisional
Probab=21.53 E-value=1.9e+02 Score=31.42 Aligned_cols=38 Identities=18% Similarity=0.242 Sum_probs=27.8
Q ss_pred cCC--eEEecCCCchHHHHHHHHHHHHHcCCcEEEEecCH
Q 002515 16 DGS--IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVND 53 (913)
Q Consensus 16 ~G~--IaEm~TGEGKTLva~lpa~l~AL~G~~VhVvT~Nd 53 (913)
.|. ++.=.+|.|||..+.--++-.+..|..|..||...
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee 61 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALEE 61 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEeeC
Confidence 455 56678999999876666654567899998888644
No 478
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=21.46 E-value=68 Score=36.90 Aligned_cols=55 Identities=18% Similarity=0.082 Sum_probs=40.4
Q ss_pred eEEecCCCchHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcC
Q 002515 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQR 79 (913)
Q Consensus 19 IaEm~TGEGKTLva~lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLsv~~i~~ 79 (913)
++-..||.|||..+++|..+.+ +..+.|+-+.-.|.+. .....+.+|-.|-++..
T Consensus 3 lv~g~tGsGKt~~~viP~ll~~--~~s~vv~D~Kge~~~~----t~~~r~~~G~~V~v~nP 57 (384)
T cd01126 3 LVFAPTRSGKGVGFVIPNLLTW--PGSVVVLDPKGENFEL----TSEHRRALGRKVFVFDP 57 (384)
T ss_pred eEecCCCCCCccEEEccchhcC--CCCEEEEccchhHHHH----HHHHHHHcCCeEEEEcC
Confidence 4567899999999999988653 4678888888888753 33444557888887754
No 479
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=21.44 E-value=2.1e+02 Score=29.87 Aligned_cols=38 Identities=24% Similarity=0.267 Sum_probs=27.2
Q ss_pred cCCe--EEecCCCchHHHHHHHHHHHHHcCCcEEEEecCH
Q 002515 16 DGSI--AEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVND 53 (913)
Q Consensus 16 ~G~I--aEm~TGEGKTLva~lpa~l~AL~G~~VhVvT~Nd 53 (913)
.|.+ +.=..|.|||..+.-.++-.+-.|..|..++...
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e~ 57 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTEG 57 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECCC
Confidence 5664 4447899999877777765566788888886543
No 480
>cd04867 TGS_YchF_C TGS_YchF_C: This subfamily represents TGS domain-containing YchF GTP-binding protein, a universally conserved GTPase whose function is unknown. The N-terminal domain of the YchF protein belongs to the Obg-like family of GTPases, and some members of the family contain a C-terminal TGS domain. TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=21.36 E-value=1.3e+02 Score=28.01 Aligned_cols=24 Identities=21% Similarity=0.523 Sum_probs=17.7
Q ss_pred HHHHHHhhccCcceEEECCeEEEE
Q 002515 217 ALKAKEFYRRDVQYIVRNGKALII 240 (913)
Q Consensus 217 Al~A~~l~~~d~dYiV~dg~V~iV 240 (913)
|-.+-.+-.+++||+|+||.|+.+
T Consensus 58 ak~~Gkir~eGK~Yiv~DGDi~~f 81 (83)
T cd04867 58 AKEAGKYRQEGKDYVVQDGDIIFF 81 (83)
T ss_pred HHHcChhhhhCCceEeeCCeEEEE
Confidence 333445556899999999999864
No 481
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=21.36 E-value=2.6e+02 Score=31.85 Aligned_cols=70 Identities=26% Similarity=0.411 Sum_probs=44.0
Q ss_pred ccccCCCcccH-HHHHHHHhCCCeEE-----------eCCCCCcc--cccC---------CCeEEeChhHHHHHHHHHHH
Q 002515 291 LSGMTGTAKTE-EKEFLKMFQMPVIE-----------VPTNLPNI--RVDL---------PIQSFATARGKWEYARQEVE 347 (913)
Q Consensus 291 L~GmTGTa~te-~~Ef~~iY~l~vv~-----------IPt~~p~~--R~d~---------~d~v~~t~~~k~~aii~ei~ 347 (913)
|+|=||+.+|. +-.|.+-+|-+|+. |-|.||.. +..- |...| +..+........|.
T Consensus 8 I~GPTAsGKT~lai~LAk~~~~eIIs~DSmQvYr~mdIGTAKps~~e~~~vpHhliDi~~p~e~y-sa~~f~~~a~~~i~ 86 (308)
T COG0324 8 IAGPTASGKTALAIALAKRLGGEIISLDSMQVYRGLDIGTAKPSLEELAGVPHHLIDIRDPTESY-SAAEFQRDALAAID 86 (308)
T ss_pred EECCCCcCHHHHHHHHHHHcCCcEEecchhhhcCCCcccCCCCCHHHHcCCCEEEecccCccccc-cHHHHHHHHHHHHH
Confidence 78999999986 45677777766654 44566753 2222 22322 33444455667777
Q ss_pred HHHhcC-CcEEEEec
Q 002515 348 SMFRLG-RPVLVGST 361 (913)
Q Consensus 348 ~~~~~g-rPVLI~t~ 361 (913)
+.++.| -|||||-+
T Consensus 87 ~i~~rgk~pIlVGGT 101 (308)
T COG0324 87 DILARGKLPILVGGT 101 (308)
T ss_pred HHHhCCCCcEEEccH
Confidence 777777 68888854
No 482
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=21.20 E-value=1.5e+02 Score=27.70 Aligned_cols=37 Identities=11% Similarity=0.079 Sum_probs=30.5
Q ss_pred HhcCCcEEEEecch--hhHHHHHHHHHHCCCCeEEeccC
Q 002515 350 FRLGRPVLVGSTSV--ENSEYLSDLLKQQGIPHNVLNAR 386 (913)
Q Consensus 350 ~~~grPVLI~t~Si--~~SE~ls~~L~~~gi~~~vLnA~ 386 (913)
....+||+|.|.+- ..|...+..|...|++..+|+++
T Consensus 61 i~~~~~vvvyc~~g~~~~s~~~a~~l~~~G~~v~~l~GG 99 (110)
T cd01521 61 LDKEKLFVVYCDGPGCNGATKAALKLAELGFPVKEMIGG 99 (110)
T ss_pred CCCCCeEEEEECCCCCchHHHHHHHHHHcCCeEEEecCC
Confidence 35678999999975 37889999999999987777764
No 483
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=21.03 E-value=90 Score=41.55 Aligned_cols=19 Identities=42% Similarity=0.814 Sum_probs=15.9
Q ss_pred CCceEEEeecchhhhhccCC
Q 002515 124 KPFHFAIVDEVDSVLIDEGR 143 (913)
Q Consensus 124 R~~~~aIVDEvDsiLiDea~ 143 (913)
+|..|+|+||||.-| |.++
T Consensus 1087 ~PaPf~vLDEVDAaL-D~~N 1105 (1163)
T COG1196 1087 RPAPFYVLDEVDAAL-DDAN 1105 (1163)
T ss_pred CCCCeeeeccchhhc-cHHH
Confidence 389999999999998 6643
No 484
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=20.96 E-value=2.8e+02 Score=25.17 Aligned_cols=51 Identities=12% Similarity=0.090 Sum_probs=36.4
Q ss_pred CCcEEEEec------chhhHHHHHHHHHHCCCCeEEeccCCcchhhHHHHHHhcCCCc
Q 002515 353 GRPVLVGST------SVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQAGRKY 404 (913)
Q Consensus 353 grPVLI~t~------Si~~SE~ls~~L~~~gi~~~vLnA~~k~~~~Ea~Iia~AG~~G 404 (913)
.-||+||+. ..--|..+.+.|.+.|++...++-. ++.+-..++.+..|+..
T Consensus 7 ~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~-~~~~~~~~l~~~~g~~t 63 (90)
T cd03028 7 ENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDIL-EDEEVRQGLKEYSNWPT 63 (90)
T ss_pred cCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcC-CCHHHHHHHHHHhCCCC
Confidence 359999987 4556889999999999999998864 22222345666666543
No 485
>PF15609 PRTase_2: Phosphoribosyl transferase
Probab=20.84 E-value=1.6e+02 Score=31.29 Aligned_cols=52 Identities=17% Similarity=0.332 Sum_probs=46.2
Q ss_pred CchHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEE
Q 002515 26 EGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLI 77 (913)
Q Consensus 26 EGKTLva~lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLsv~~i 77 (913)
.|||+.-++-++-..+..+.+.|+|-.|-....+.+.+..+-+-||+++.++
T Consensus 133 TG~T~lnli~al~~~~p~~~yvvasL~d~~~~~~~~~~~~~~~~lgi~i~~v 184 (191)
T PF15609_consen 133 TGNTFLNLIRALHAKYPRKRYVVASLLDWRSEEDRARFEALAEELGIPIDVV 184 (191)
T ss_pred chHHHHHHHHHHHHhCCCceEEEEEEeeCCCHHHHHHHHHHHHHcCCcEEEE
Confidence 4799999999887777788999999999999999999999999999998765
No 486
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=20.71 E-value=53 Score=33.60 Aligned_cols=38 Identities=24% Similarity=0.357 Sum_probs=21.0
Q ss_pred ccCCCeEEECCCcchhhHHHHhhccchhhhhccCCCCceEEEeecchhhh
Q 002515 89 NYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (913)
Q Consensus 89 aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiL 138 (913)
...++|+.+|.+...... +.. .-. .++++|||||-.+.
T Consensus 168 l~~~~vi~~T~~~~~~~~----~~~-----~~~---~~d~vIvDEAsq~~ 205 (236)
T PF13086_consen 168 LKEADVIFTTLSSAASPF----LSN-----FKE---KFDVVIVDEASQIT 205 (236)
T ss_dssp HHT-SEEEEETCGGG-CC----GTT-------------SEEEETTGGGS-
T ss_pred cccccccccccccchhhH----hhh-----hcc---cCCEEEEeCCCCcc
Confidence 446899999987652111 110 111 68999999997764
No 487
>PF13245 AAA_19: Part of AAA domain
Probab=20.70 E-value=1.6e+02 Score=26.31 Aligned_cols=33 Identities=18% Similarity=0.278 Sum_probs=25.2
Q ss_pred HHHHHHHHHHhc----CCcEEEEecchhhHHHHHHHH
Q 002515 341 YARQEVESMFRL----GRPVLVGSTSVENSEYLSDLL 373 (913)
Q Consensus 341 aii~ei~~~~~~----grPVLI~t~Si~~SE~ls~~L 373 (913)
.+++.+...... +++|||.+.+-..++.+.+.|
T Consensus 26 ~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 26 TLAARIAELLAARADPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHHHHHHHHHHhcCCCCeEEEECCCHHHHHHHHHHH
Confidence 344444444433 899999999999999999998
No 488
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=20.63 E-value=2.7e+02 Score=32.36 Aligned_cols=54 Identities=11% Similarity=0.211 Sum_probs=42.3
Q ss_pred cCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHHhccC------CCeEEECC
Q 002515 42 TGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNYR------CDITYTNN 99 (913)
Q Consensus 42 ~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLsv~~i~~~~~~~~r~~aY~------~DI~YgT~ 99 (913)
.+..+.|.+.+..-|.+-++.+. ..|+++..+.++++..+|..+.. .+|+.+|.
T Consensus 244 ~~~~~lVF~~s~~~~~~l~~~L~----~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd 303 (434)
T PRK11192 244 EVTRSIVFVRTRERVHELAGWLR----KAGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATD 303 (434)
T ss_pred CCCeEEEEeCChHHHHHHHHHHH----hCCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEcc
Confidence 45678999999877776666554 47999999999999999876543 58888885
No 489
>PF06071 YchF-GTPase_C: Protein of unknown function (DUF933); InterPro: IPR013029 This domain is found at the C terminus of family of conserved hypothetical proteins found in both prokaryotes and eukaryotes. While the function of these proteins is not known, the crystal structure of P44681 from SWISSPROT from Haemophilus influenzae has been determined []. This protein consists of three domains: an N-terminal domain which has a mononucleotide binding fold typical for the P-loop NTPases, a central domain which forms an alpha-helical coiled coil, and this C-terminal domain which is composed of a six-stranded half-barrel curved around an alpha helix. The central domain and this domain are topologically similar to RNA-binding proteins, while the N-terminal region contains the features typical of GTP-dependent molecular switches. The purified protein was capable of binding both double-stranded nucleic acid and GTP. It was suggested, therefore, that this protein might be part of a nucleoprotein complex and could function as a GTP-dependent translation factor.; PDB: 1NI3_A 1JAL_A 2DWQ_B 2DBY_A 2OHF_A.
Probab=20.52 E-value=57 Score=30.25 Aligned_cols=24 Identities=25% Similarity=0.338 Sum_probs=14.1
Q ss_pred HHHHHHhh-ccCcceEEECCeEEEE
Q 002515 217 ALKAKEFY-RRDVQYIVRNGKALII 240 (913)
Q Consensus 217 Al~A~~l~-~~d~dYiV~dg~V~iV 240 (913)
++++...+ .+++||+|+||.|+.+
T Consensus 57 ~~k~~Gk~r~eGK~YivqDGDIi~f 81 (84)
T PF06071_consen 57 AAKEAGKLRLEGKDYIVQDGDIIHF 81 (84)
T ss_dssp HHHHTT-SEEEETT-B--TTEEEEE
T ss_pred HHHHcCCccccCCceeEeCCCEEEE
Confidence 44444443 4799999999999865
No 490
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=20.48 E-value=2e+02 Score=35.94 Aligned_cols=14 Identities=21% Similarity=0.420 Sum_probs=12.1
Q ss_pred CceEEEeecchhhh
Q 002515 125 PFHFAIVDEVDSVL 138 (913)
Q Consensus 125 ~~~~aIVDEvDsiL 138 (913)
+..++||||+|.|-
T Consensus 119 ~~kVIIIDEad~Lt 132 (624)
T PRK14959 119 RYKVFIIDEAHMLT 132 (624)
T ss_pred CceEEEEEChHhCC
Confidence 67899999999873
No 491
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=20.42 E-value=81 Score=40.06 Aligned_cols=81 Identities=22% Similarity=0.305 Sum_probs=47.3
Q ss_pred cccccCCCcccHHHHHHHHhCCCeEEeCCCCCccccc---CCCeEE---eChhHHHHHHHHHHHHHHhc--CCcEEEEec
Q 002515 290 KLSGMTGTAKTEEKEFLKMFQMPVIEVPTNLPNIRVD---LPIQSF---ATARGKWEYARQEVESMFRL--GRPVLVGST 361 (913)
Q Consensus 290 kL~GmTGTa~te~~Ef~~iY~l~vv~IPt~~p~~R~d---~~d~v~---~t~~~k~~aii~ei~~~~~~--grPVLI~t~ 361 (913)
||.-||+|+.-+ .|- -|-..+.||| |.+..| .|-.|. .|..+........+...|++ .-.||||.+
T Consensus 416 KLIIMSATLRVs--DFt--enk~LFpi~p--PlikVdARQfPVsIHF~krT~~DYi~eAfrKtc~IH~kLP~G~ILVFvT 489 (1172)
T KOG0926|consen 416 KLIIMSATLRVS--DFT--ENKRLFPIPP--PLIKVDARQFPVSIHFNKRTPDDYIAEAFRKTCKIHKKLPPGGILVFVT 489 (1172)
T ss_pred eEEEEeeeEEec--ccc--cCceecCCCC--ceeeeecccCceEEEeccCCCchHHHHHHHHHHHHhhcCCCCcEEEEEe
Confidence 566788888631 111 1223344444 333222 344443 24444444444555555643 236999999
Q ss_pred chhhHHHHHHHHHHC
Q 002515 362 SVENSEYLSDLLKQQ 376 (913)
Q Consensus 362 Si~~SE~ls~~L~~~ 376 (913)
--.+.+.|.+.|++.
T Consensus 490 GQqEV~qL~~kLRK~ 504 (1172)
T KOG0926|consen 490 GQQEVDQLCEKLRKR 504 (1172)
T ss_pred ChHHHHHHHHHHHhh
Confidence 999999999999886
No 492
>PRK14016 cyanophycin synthetase; Provisional
Probab=20.36 E-value=2.2e+02 Score=36.07 Aligned_cols=30 Identities=37% Similarity=0.447 Sum_probs=24.4
Q ss_pred ecCCC-chHHHHHHHHHHHHHcCCcEEEEec
Q 002515 22 MKTGE-GKTLVSTLAAYLNALTGEGVHVVTV 51 (913)
Q Consensus 22 m~TGE-GKTLva~lpa~l~AL~G~~VhVvT~ 51 (913)
.=||+ |||-|..|.+.+....|+.|.+.++
T Consensus 484 aVTGTnGKTTTt~lla~iL~~~G~~vg~~~t 514 (727)
T PRK14016 484 AVTGTNGKTTTTRLIAHILKLSGKRVGMTTT 514 (727)
T ss_pred EEECCCCchHHHHHHHHHHHHcCCeEEEECC
Confidence 35999 9999998888888888988866555
No 493
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=20.36 E-value=1.8e+02 Score=36.72 Aligned_cols=117 Identities=21% Similarity=0.165 Sum_probs=0.0
Q ss_pred hcCCeEEecCCCchHH-HHHHHHHHHHHcCC---------cEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHH
Q 002515 15 HDGSIAEMKTGEGKTL-VSTLAAYLNALTGE---------GVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPE 84 (913)
Q Consensus 15 ~~G~IaEm~TGEGKTL-va~lpa~l~AL~G~---------~VhVvT~NdyLA~RDae~~~~~y~~LGLsv~~i~~~~~~~ 84 (913)
+.|-|..-.-|-|||+ ...+.+.-.+-... ...|||| ..|--+=..++..=.+.=-|+|....+.--.+
T Consensus 345 ~~GGILaddmGLGKTlsmislil~qK~~~~~~~~~~~~a~~TLII~P-aSli~qW~~Ev~~rl~~n~LsV~~~HG~n~r~ 423 (901)
T KOG4439|consen 345 PSGGILADDMGLGKTLSMISLILHQKAARKAREKKGESASKTLIICP-ASLIHQWEAEVARRLEQNALSVYLYHGPNKRE 423 (901)
T ss_pred CCCcccccccccccchHHHHHHHHHHHHHHhhcccccccCCeEEeCc-HHHHHHHHHHHHHHHhhcceEEEEecCCcccc
Q ss_pred HHHhccCC-CeEEECCCcchh---hHHHHhhccchhhhhccCCCCceEEEeecchhh
Q 002515 85 ERRSNYRC-DITYTNNSELGF---DYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV 137 (913)
Q Consensus 85 ~r~~aY~~-DI~YgT~~e~~f---DyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsi 137 (913)
.+...... |||.+|-+-+.- |=+...-..++-..+ .-..+|+||||.|
T Consensus 424 i~~~~L~~YDvViTTY~lva~~~~~e~~~~~~~spL~~I-----~W~RVILDEAH~I 475 (901)
T KOG4439|consen 424 ISAKELRKYDVVITTYNLVANKPDDELEEGKNSSPLARI-----AWSRVILDEAHNI 475 (901)
T ss_pred CCHHHHhhcceEEEeeeccccCCchhhhcccCccHHHHh-----hHHHhhhhhhhhh
No 494
>TIGR03316 ygeW probable carbamoyltransferase YgeW. Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism.
Probab=20.31 E-value=4.2e+02 Score=30.79 Aligned_cols=92 Identities=21% Similarity=0.183 Sum_probs=53.6
Q ss_pred CchhHHHHHHH-H--hcCC--------eEEecCCC---chHH-HHHHHHHHHHHcCCcEEEEecCHH-HHHHHHHHHHHH
Q 002515 3 HFDVQIIGGAV-L--HDGS--------IAEMKTGE---GKTL-VSTLAAYLNALTGEGVHVVTVNDY-LAQRDAEWMERV 66 (913)
Q Consensus 3 p~dvQl~g~l~-L--~~G~--------IaEm~TGE---GKTL-va~lpa~l~AL~G~~VhVvT~Ndy-LA~RDae~~~~~ 66 (913)
-+|+|.++=+. + +.|. |+-+-.|- |+|. ++-=.+.+.+..|-.|.+++|-.| +-....+.....
T Consensus 146 ~HPtQaLaDl~Ti~e~~G~~~~l~g~kvai~~~~d~~~gr~~~v~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~ 225 (357)
T TIGR03316 146 DHPTQAMADIMTLQEKFGGIENLKGKKFAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEGYHLLPEVIEVAKKN 225 (357)
T ss_pred CCchHHHHHHHHHHHHhCCccccCCCEEEEEeccccccCccchHHHHHHHHHHHcCCEEEEECCCcccCCHHHHHHHHHH
Confidence 48999988763 3 2353 45444444 4554 111111223566889999999876 233334445556
Q ss_pred hhhcCCeEEEEcCCCCHHHHHhccCCCeEEECC
Q 002515 67 HRFLGLSVGLIQRGMIPEERRSNYRCDITYTNN 99 (913)
Q Consensus 67 y~~LGLsv~~i~~~~~~~~r~~aY~~DI~YgT~ 99 (913)
.+-.|.++.+. .++ ....-++||+|++.
T Consensus 226 ~~~~g~~~~~~-~d~----~ea~~~aDvvyt~~ 253 (357)
T TIGR03316 226 AAENGGKFNIV-NSM----DEAFKDADIVYPKS 253 (357)
T ss_pred HHHcCCeEEEE-cCH----HHHhCCCCEEEECC
Confidence 66778776543 221 22344799999995
No 495
>COG0455 flhG Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]
Probab=20.10 E-value=1.2e+02 Score=33.54 Aligned_cols=48 Identities=29% Similarity=0.394 Sum_probs=33.7
Q ss_pred eEEecCCCchHHH-HHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeE
Q 002515 19 IAEMKTGEGKTLV-STLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSV 74 (913)
Q Consensus 19 IaEm~TGEGKTLv-a~lpa~l~AL~G~~VhVvT~NdyLA~RDae~~~~~y~~LGLsv 74 (913)
++.-|=|.|||.+ +-|.+++.++.|+.|.++=..-. |+.+-..||+.-
T Consensus 7 v~SgKGGvGKTtitanlga~~~~~~~k~V~~iDaD~g--------~~nL~~~~g~~~ 55 (262)
T COG0455 7 VVSGKGGVGKTTITANLGAALAALGGKVVLLIDADLG--------LGNLSLLLGVES 55 (262)
T ss_pred EEecCCCccHHHHHHhHHHHHHhhCCCeEEEEecCCC--------CCcHHHHhCCCC
Confidence 4455779999975 55548888999999877755443 445666677664
No 496
>PF00148 Oxidored_nitro: Nitrogenase component 1 type Oxidoreductase; InterPro: IPR000510 Enzymes belonging to this family include cofactor-requiring nitrogenases and protochlorophyllide reductase. The key enzymatic reactions in nitrogen fixation are catalysed by the nitrogenase complex, which has two components, the iron protein (component 2), and a component (component 1) which is either a molybdenum-iron, vanadium-iron or iron-iron protein. The enzyme (1.18.6.1 from EC) forms a hexamer of two alpha, two beta and two delta chains. Protochlorophyllide reductase (1.3.1.33 from EC) is involved in the light-dependent accumulation of chlorophyll, probably at the step of reduction of protochlorophyllide to chlorophyllide.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QH1_C 1QH8_A 1H1L_C 1QGU_A 3AEK_C 3AET_C 3AER_C 3AEU_A 3AES_C 3AEQ_C ....
Probab=20.08 E-value=4.5e+02 Score=30.19 Aligned_cols=59 Identities=22% Similarity=0.227 Sum_probs=48.7
Q ss_pred CcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEc-CCCCHHHHHhccCCCeEEECCCcch
Q 002515 44 EGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQ-RGMIPEERRSNYRCDITYTNNSELG 103 (913)
Q Consensus 44 ~~VhVvT~NdyLA~RDae~~~~~y~~LGLsv~~i~-~~~~~~~r~~aY~~DI~YgT~~e~~ 103 (913)
+.|.|+..+...- .|.+++..+++.+|+.|.++. ++.+.++-+.+-.|..+.....+.+
T Consensus 145 ~~VNiiG~~~~~~-~d~~el~~lL~~~Gi~v~~~~~~~~t~~e~~~~~~A~lniv~~~~~~ 204 (398)
T PF00148_consen 145 RSVNIIGGSPLGP-GDLEELKRLLEELGIEVNAVFPGGTTLEEIRKAPEAALNIVLCPEGG 204 (398)
T ss_dssp SEEEEEEESTBTH-HHHHHHHHHHHHTTEEEEEEEETTBCHHHHHHGGGSSEEEESSCCHH
T ss_pred CceEEecCcCCCc-ccHHHHHHHHHHCCCceEEEeCCCCCHHHHHhCCcCcEEEEeccchh
Confidence 5899997663332 899999999999999998876 7788888888889999888888744
No 497
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=20.07 E-value=2.6e+02 Score=33.88 Aligned_cols=37 Identities=16% Similarity=0.207 Sum_probs=32.9
Q ss_pred EEEeccCCCchhhHhhhhcccccCCCCCceeEEEecc
Q 002515 561 HVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQ 597 (913)
Q Consensus 561 ~VIgTerhes~RiD~QLrGRagRQGdpGss~f~lSLe 597 (913)
-||....++.+|=-..+.||+||-|--|.+-.+|-=+
T Consensus 401 ~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~alL~l~p~ 437 (543)
T KOG0342|consen 401 WVVQYDPPSDPEQYIHRVGRTAREGKEGKALLLLAPW 437 (543)
T ss_pred EEEEeCCCCCHHHHHHHhccccccCCCceEEEEeChh
Confidence 4888999999999999999999999999998877533
Done!