Query 002515
Match_columns 913
No_of_seqs 248 out of 1535
Neff 5.6
Searched_HMMs 29240
Date Tue Mar 26 16:28:54 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002515.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1234-1238//hhsearch_pdb/002515hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ipc_A Preprotein translocase 1.0 1 1 1728.9 71.6 776 1-906 78-942 (997)
2 3jux_A Protein translocase sub 1.0 1 1 1635.3 69.8 695 1-903 74-819 (822)
3 1nkt_A Preprotein translocase 1.0 1 1 1574.7 77.5 756 1-906 110-869 (922)
4 2fsf_A Preprotein translocase 1.0 1 1 1520.4 62.6 737 1-907 73-828 (853)
5 1tf5_A Preprotein translocase 1.0 1 1 1456.0 73.2 703 1-904 82-785 (844)
6 2db3_A ATP-dependent RNA helic 1.0 1 1 211.1 30.9 277 2-420 78-367 (434)
7 2j0s_A ATP-dependent RNA helic 1.0 1 1 198.3 27.0 273 2-420 59-343 (410)
8 2i4i_A ATP-dependent RNA helic 1.0 1 1 197.5 25.9 279 2-420 37-343 (417)
9 2v1x_A ATP-dependent DNA helic 1.0 1 1 195.4 27.2 313 2-598 44-375 (591)
10 3i5x_A ATP-dependent RNA helic 1.0 1 1 194.2 34.9 284 2-420 94-409 (563)
No 1
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=1.00 E-value=1 Score=1728.86 Aligned_cols=776 Identities=45% Similarity=0.719 Sum_probs=692.3
Q ss_pred CCCCHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf 99822679999997269867833798369999999999997499679996498889998999999764409949997279
Q 002515 1 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRG 80 (913)
Q Consensus 1 ~rp~dvQl~g~l~L~~G~IaEm~TGEGKTLva~lpa~l~AL~G~~V~VvT~NdyLA~RD~e~~~~~y~~LGlsv~~i~~~ 80 (913)
|+|||||++|+++||+|+||||+||||||++++||+|+++|.|++|||||||+|||+||++||+++|.+||++|++++++
T Consensus 78 ~~Pt~VQ~~~ip~LlqG~IaeakTGeGKTLvf~Lp~~L~aL~G~qv~VvTPTreLA~Qdae~m~~l~~~lGLsv~~i~Gg 157 (997)
T 2ipc_A 78 MRHFDVQLIGGAVLHEGKIAEMKTGEGKTLVATLAVALNALTGKGVHVVTVNDYLARRDAEWMGPVYRGLGLSVGVIQHA 157 (997)
T ss_dssp CCCCHHHHHHHHHHHTTSEEECCSTHHHHHHHHHHHHHHHTTCSCCEEEESSHHHHHHHHHHHHHHHHTTTCCEEECCTT
T ss_pred CCCCHHHHHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 99967988624002477032336899639999999999998489779995889999999999999998649859999699
Q ss_pred CCHHHHHHCCCCCEEEECCCCCHHHHHHHHHCCCHHHHHCCCCCCCEEEEEECCHHHHHCCCCCCEECCCCCCCCCCCHH
Q ss_conf 99988973228981898799503669887430031233306999840899604024431068975000378887755269
Q 002515 81 MIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYP 160 (913)
Q Consensus 81 ~~~~~r~~aY~~DI~YgT~~el~fDyLrD~l~~~~~~~v~r~~R~~~~~IVDEvDsiLiDea~tpLiiSg~~~~~~~~y~ 160 (913)
+++++++.+|+|||+||||++||||||+|+|..+++..+++++++++|+|||||||||+|+|++|||||||.+....+|.
T Consensus 158 ~~~~~r~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmLiDeartPLIISgp~~~~~~lY~ 237 (997)
T 2ipc_A 158 STPAERRKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSILIDEARTPLIISGPAEKATDLYY 237 (997)
T ss_dssp CCHHHHHHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHTTSSTTSCEEEEESCSSCHHHHH
T ss_pred CCHHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCHHHCCCCCCCCCCEEEEECHHHHHHHCCCCCEEEECCCCCCHHHHH
T ss_conf 99999998739998997844661699997640056650224677743699761678997478887464078754158999
Q ss_pred HHHHHHHHHCCCC------------CEEEECCCCEEECCHHHHHHHHHHHCCCCCCCCCC-CHHHHHHHHHHHHHHHCCC
Q ss_conf 9999999810388------------81886778746604835999998703699778889-1899999999999862159
Q 002515 161 VAAKVAELLVQGL------------HYTVELKNNSVELTEEGIALAEMALETNDLWDEND-PWARFVMNALKAKEFYRRD 227 (913)
Q Consensus 161 ~~~~~v~~l~~~~------------~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~l~~~~~-~~~~~i~~Al~A~~l~~~d 227 (913)
.++.++..|.++. ||.+|++.++++||++|+.++|+++++.+||++.+ .|.+||++||+|+++|++|
T Consensus 238 ~~~~~i~~L~~~~~~~~~~~~~~~~dy~vdek~r~v~LTe~G~~~~E~~l~i~~Ly~~~n~~l~~~i~~ALrA~~lf~rd 317 (997)
T 2ipc_A 238 KMAEIAKKLERGLPAEPGVRKEPTGDYTVEEKNRSVHLTLQGIAKAEKLLGIEGLFSPENMELAHMLIQAIRAKELYHRD 317 (997)
T ss_dssp HHHHHHHHSCCCCCCCSSSCCCSSCCCCCTTSCCCCCCCHHHHHHHHHHHSCHHHHTTTCHHHHHHHHHHHHHHHSSCHH
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCEEEECHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99999998563223333345677777598617635997657799999980995225713678999999999999997569
Q ss_pred CCEEEECCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEEEHHHHHHCCCCCCCCCCCCCHHHHHHH
Q ss_conf 54288789399986788831257534800458999682894467860045554136772227422467885027999998
Q 002515 228 VQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLK 307 (913)
Q Consensus 228 ~dYiV~~g~I~ivD~~TGRi~~gr~ws~GLHQaieaKEgv~i~~e~~t~a~Is~q~~f~~Y~kl~GmTGTa~te~~Ef~~ 307 (913)
+||||+||+|+|||+||||+|+|||||+||||||||||||+|++||+|+|+|||||||++|++|+||||||+||+.||.+
T Consensus 318 ~dYiV~dgeV~IVDe~TGR~m~grrwsdGLHQAiEAKEgv~I~~e~~TlAsIT~QnyFr~Y~kLsGMTGTA~tE~~Ef~~ 397 (997)
T 2ipc_A 318 RDYIVQDGQVIIVDEFTGRLMPGRRYGEGLHQAIEAKEGVRIERENQTLATITYQNFFRLYEKRAGMTGTAKTEEKEFQE 397 (997)
T ss_dssp HHEEECSSCEEEEETTTTEECTTCCCGGGHHHHHHHHTTCCCCCSCEEEEEECHHHHHTTSSEEEEEESSCGGGHHHHHH
T ss_pred CCEEEECCEEEEEECCCCEECCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEEHHHHHHHCHHHEECCCCCHHHHHHHHH
T ss_conf 87597889899997899836889866578899999981898887762036652989998573750469896679999999
Q ss_pred HHCCCEEEECCCCCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHH-------------
Q ss_conf 8099929908999754335997077094489999999999977549949998424221899999999-------------
Q 002515 308 MFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLK------------- 374 (913)
Q Consensus 308 iY~l~v~~IPt~~p~~R~d~pd~v~~t~~~k~~aii~ei~~~~~~grpVLI~t~si~~se~ls~~L~------------- 374 (913)
+||++|++||||+|++|+|+||.||.|..+||.||+++|.++|++||||||||.||+.||.||++|+
T Consensus 398 iY~l~Vv~IPTn~p~~R~D~~d~vy~t~~~K~~AIv~eI~~~~~~GqPVLVgT~SIe~SE~LS~~L~~~~~~~~~~~~~~ 477 (997)
T 2ipc_A 398 IYGMDVVVVPTNRPVIRKDFPDVVYRTEKGKFYAVVEEIAEKYERGQPVLVGTISIEKSERLSQMLKEPRLYLPRLEMRL 477 (997)
T ss_dssp HHCCCEEECCCSSCCCCEEEEEEEESSHHHHHHHHHHHHHHHHHHTCCEEEECSSHHHHHHHHHHHHCGGGGHHHHHHHH
T ss_pred HHCCCEEECCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf 86987898699998431258981774999999999999999997799889996979999999999730322320344444
Q ss_pred ---------------------------------------------------------------HCCCCEEEECCCCCCHH
Q ss_conf ---------------------------------------------------------------77997278506984124
Q 002515 375 ---------------------------------------------------------------QQGIPHNVLNARPKYAA 391 (913)
Q Consensus 375 ---------------------------------------------------------------~~gi~~~vLna~~k~~~ 391 (913)
+.||||+|||| |+|+
T Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gI~H~VLNA--K~he 555 (997)
T 2ipc_A 478 ELFKKASQKQQGPEWERLRKLLERPAQLKDEDLAPFEGLIPPKGNLRTAWEGLKRAVHTLAVLRQGIPHQVLNA--KHHA 555 (997)
T ss_dssp HHHHHHHTTCCSHHHHHHHHHTSSSTTCSHHHHSGGGGGCCSSHHHHHHHHHHHHHHHHHHHHHHCCCCCEECS--SSHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEECCC--CCHH
T ss_conf 54432221002310011233210000001111121122344311122344431011234578870987465145--5208
Q ss_pred HHHHHHHHCCCCCCEEEECCCCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCHHHH
Q ss_conf 19999986399762999728877884200599714778999999998887542012234567899400245420330479
Q 002515 392 REAETVAQAGRKYAITISTNMAGRGTDIILGGNPKMLAKKIIEDRLLLLLTREALNVEVDDKTSSPKVLSEIKLGSSSLA 471 (913)
Q Consensus 392 ~Ea~Iia~AG~~g~VTIATnmAGRGTDIkLgg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (913)
+||+||++||++|+||||||||||||||+|||||+++++..++...+. + .. .....+
T Consensus 556 ~EAeIIAqAG~~GaVTIATNMAGRGTDIkLggn~e~~~~~~~~~~~~~-----------------~--~~---~~~~~~- 612 (997)
T 2ipc_A 556 REAEIVAQAGRSKTVTIATNMAGRGTDIKLGGNPEYLAAALLEKEGFD-----------------R--YE---WKVELF- 612 (997)
T ss_dssp HHHHHHHTTTSTTCEEEECSSTTTTSCCCSSCCHHHHHHHTTSSSCSS-----------------T--TH---HHHHHH-
T ss_pred HHHHHHHHCCCCCEEEEEECCCCCCCCEECCCCHHHHHHHHHHHHCCC-----------------C--CC---CCCCCC-
T ss_conf 799999955999819997555679967205898789999988750146-----------------4--32---100000-
Q ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 99999998755134567740233221000144666544438999988732025799971468888877543320023342
Q 002515 472 LLAKAALLAKYVGKAEGKSWTYQEAKSFFSESVEMSQSMNLKELQKLIDKQSAMYPLGPTVALTYLSVLKDCEVHCSNEG 551 (913)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 551 (913)
..+.+.+++ .|. ...- +....++.+. +.+.+++..|..++
T Consensus 613 -------~~~~~~~~~--~~~-------------------~~~~-----------~~~~~~~~~~-~~~~~~~~~~~~e~ 652 (997)
T 2ipc_A 613 -------IKKMVAGKE--EEA-------------------RALA-----------QELGIREELL-ERIREIREECKQDE 652 (997)
T ss_dssp -------HHHHHHTCH--HHH-------------------HHHH-----------HHTTCCHHHH-HHHHHHHHHHHHHH
T ss_pred -------CCCCCCCCH--HHC-------------------CCCC-----------HHHHHHHHHH-HHHHHHHHHHHHHH
T ss_conf -------000134401--210-------------------1110-----------0122346678-88877665544445
Q ss_pred HHHHHCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCCEEEEEECCCHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCHHH
Q ss_conf 13451386289931589822367653012245899993369986460355520589147999996529999987564179
Q 002515 552 SEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDTSWAVDLISRITNDEDMPIEGDAI 631 (913)
Q Consensus 552 ~~V~~~GGL~VIgTer~esrRid~QlrGRagRQGdpGss~f~lSleD~l~~~f~~~~~~~~~~~~~~~~~~~~~i~~~~~ 631 (913)
++|+++|||||||||||||||||||||||||||||||||+|||||||+|||+|| ++++.++|.++++++++||+|+|+
T Consensus 653 ~~V~e~GGLhVIGTeRhESrRIDnQLRGRaGRQGDPGsSrF~LSLeDdLmr~fg--~~~~~~~m~~l~~~~~~~Ie~~~v 730 (997)
T 2ipc_A 653 ERVRALGGLFIIGTERHESRRIDNQLRGRAGRQGDPGGSRFYVSFDDDLMRLFA--SDRVIAMLDRMGFDDSEPIEHPMV 730 (997)
T ss_dssp HHHTTTCCCCEEESSCCSSHHHHHHHHHTSSCSSCCCEEEEEEESSSHHHHHSS--CTTHHHHHHHTCCCSSSCBCCHHH
T ss_pred HHHHHCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCEEEEEECCHHHHHHHC--HHHHHHHHHHCCCCCCCCCCCHHH
T ss_conf 679865871998235785199999996433569999874899987728887436--299999999719999875344699
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 99999999999988799999989867888898899999999876018777799999999999999987017999998757
Q 002515 632 VRQLLGLQISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSILTGANESCSQQIFQYMQAVVDEIIFGNVDPLKHPRYW 711 (913)
Q Consensus 632 ~~~i~~aQ~~vE~~~~~~Rk~~~~yd~v~~~QR~~IY~~R~~iL~~~~~di~~~i~~~~~~~i~~~v~~~~~~~~~~~~w 711 (913)
+++|++||++||++||++||++++||+|||.||++||++|++||.+..+++.+.|..|++++++++|+.+.++...+++|
T Consensus 731 ~~~ie~AQkkvE~~nf~iRK~ll~yDdV~n~QR~~IY~~R~~iL~~~~~~~~~~i~~~~~~~i~~~v~~~~~~~~~~~~w 810 (997)
T 2ipc_A 731 TRSIERAQKRVEDRNFAIRKQLLQFDDVLSRQREVIYAQRRLILLGKDEEVKEAAIGMVEETVASLAENFLNPEVHPEDW 810 (997)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHSCSSCSSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHC
T ss_conf 99999999999997599999999789999999999999999998568332899999999999999999745876770013
Q ss_pred CHHHHHHHHHHHHCCCHHHHHCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCC
Q ss_conf 78899999999850010221106774201222101443332334577789999998632221222311234443125654
Q 002515 712 SLDKLLKEFIAIAGKILDDLFAGISGDTLLKSIEELPELNSIDINNFYFPDLPKPPNLFRGIRRKSSSLKRWLAICSDDL 791 (913)
Q Consensus 712 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 791 (913)
++++|...+...++.. .+ ..+.+|.
T Consensus 811 ~~~~l~~~~~~~~~~~---------~~---------------------------------------~~~~~~~------- 835 (997)
T 2ipc_A 811 DLEGLKATLLDTAPQL---------QD---------------------------------------FPFAELR------- 835 (997)
T ss_dssp CHHHHHHHHHHSSCCC---------CS---------------------------------------SHHHHHH-------
T ss_pred CHHHHHHHHHHHCCCC---------CC---------------------------------------CCHHHHH-------
T ss_conf 7999999999861865---------68---------------------------------------8978873-------
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCH
Q ss_conf 33445421368999999999999999887731189899999999999999969999999999989976000112478927
Q 002515 792 TKNGRYRATTNLLRKYLGDILIASYLNVVQESRYDDVYMKEVERAVLVKTLDCFWRDHLINMNRLSSAVNVRSFGHRNPL 871 (913)
Q Consensus 792 ~~~~~~~~~~~~~~~~l~e~~~~~y~~k~~~~~~~~e~~~~~eR~ilL~aID~~W~eHLd~Md~LRegI~LRsYgQkDPL 871 (913)
....+++.+++.+.+.+.|..+. ...+++.++++||.++|++||.+|++||++||+||+|||||+||||||+
T Consensus 836 ------~~~~~~~~~~l~~~~~~~y~~k~--~~~~~~~~~~~er~~~L~~iD~~W~eHl~~md~Lr~~i~lr~y~q~dPl 907 (997)
T 2ipc_A 836 ------ALKAEEAVERLVEAALKAYEARE--AELSPPLMRAVERFVILNVVDNAWKEHLHNLDVLRQGIFLRGYGQKDPF 907 (997)
T ss_dssp ------HSCSHHHHHHHHHHHHHHHHHHH--HHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSSSSCHH
T ss_pred ------CCCHHHHHHHHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH
T ss_conf ------06889999999999999999988--7529999999999999999989999999999999988620032678969
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 98999999999999999999999984713447665
Q 002515 872 EEYKIDGCRFFISMLSATRRLTVESLVQYWSSPME 906 (913)
Q Consensus 872 ~EYk~EAf~lF~~M~~~Ik~~iv~~Ll~~~~~~~~ 906 (913)
+|||+|||+||+.|+.+|+.++++++|++++....
T Consensus 908 ~eyk~e~~~~F~~m~~~i~~~~~~~l~~~~~~~~~ 942 (997)
T 2ipc_A 908 QEYKIEATRLFNEMVAFIKSEVAKFLFRLKVEAEP 942 (997)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 99999999999999999999999999846355565
No 2
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=1.00 E-value=1 Score=1635.33 Aligned_cols=695 Identities=43% Similarity=0.705 Sum_probs=655.4
Q ss_pred CCCCHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCEEEEECC-
Q ss_conf 9982267999999726986783379836999999999999749967999649888999899999976440994999727-
Q 002515 1 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQR- 79 (913)
Q Consensus 1 ~rp~dvQl~g~l~L~~G~IaEm~TGEGKTLva~lpa~l~AL~G~~V~VvT~NdyLA~RD~e~~~~~y~~LGlsv~~i~~- 79 (913)
|||||||++||++||+|+||||+|||||||+++||+|++||.|++|||||||+|||+||++||+|+|+||||+||++++
T Consensus 74 ~r~~dvQligg~~L~~G~iaEM~TGEGKTLva~lp~~lnAL~G~~vhVvT~ndyLA~rdae~m~~l~~~Lglsvg~i~~~ 153 (822)
T 3jux_A 74 MRPFDVQVMGGIALHEGKVAEMKTGEGKTLAATMPIYLNALIGKGVHLVTVNDYLARRDALWMGPVYLFLGLRVGVINSL 153 (822)
T ss_dssp CCCCHHHHHHHHHHHTTCEEECCTTSCHHHHTHHHHHHHHTTSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEEEETT
T ss_pred CCCCHHHHHHHHHHHCCCHHHCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCEEEEECCC
T ss_conf 99868999889998189711135899856999999999996599649992638888968999999998709879997578
Q ss_pred -------------------------------------------------CCCHHHHHHCCCCCEEEECCCCCHHHHHHHH
Q ss_conf -------------------------------------------------9999889732289818987995036698874
Q 002515 80 -------------------------------------------------GMIPEERRSNYRCDITYTNNSELGFDYLRDN 110 (913)
Q Consensus 80 -------------------------------------------------~~~~~~r~~aY~~DI~YgT~~el~fDyLrD~ 110 (913)
++++++|+.+|+||||||||++|||||||||
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~err~aY~~DItYgTn~EfgFDYLRDn 233 (822)
T 3jux_A 154 GKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEITRKEAYLCDVTYGTNNEFGFDYLRDN 233 (822)
T ss_dssp TEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCCHHHHHHSSEEEEEHHHHHHHHHHHT
T ss_pred CCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCHHHHHHHHCCCCEECCCCCHHHHHHHHH
T ss_conf 75332110110012321001112344333210012200011110001246997999998069978726753016757750
Q ss_pred HCCCHHHHHCCCCCCCEEEEEECCHHHHHCCCCCCEECCCCCCCCCCCHHHHHHHHHHHCCCCCEEEECCCCEEECCHHH
Q ss_conf 30031233306999840899604024431068975000378887755269999999981038881886778746604835
Q 002515 111 LAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEG 190 (913)
Q Consensus 111 l~~~~~~~v~r~~R~~~~~IVDEvDsiLiDea~tpLiiSg~~~~~~~~y~~~~~~v~~l~~~~~y~~d~~~k~v~Lt~~G 190 (913)
|+.+.+++||| +++||||||||||||||||||||||||.+.++.+|..++.++..|.++.||.+|++.++++||++|
T Consensus 234 m~~~~~~~vqR---~~~~aIVDEvDSiLIDeArtPLiISg~~~~~~~~y~~~~~~v~~l~~~~dy~vdek~~~v~lTe~G 310 (822)
T 3jux_A 234 LVLDYNDKVQR---GHFYAIVDEADSVLIDEARTPLIISGPSKESPSVYRRFAQIAKKFVKDKDFTVDEKARTIILTEEG 310 (822)
T ss_dssp SCSSTTSCCCC---CCCEEEEETHHHHHTTGGGSCEEEECCCCSCHHHHHHHHHHTTSSCBTTTEEECCSSSCEEECHHH
T ss_pred CCCCHHHHCCC---CCCEEEEECCCCEEECCCCCCCEEECCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCEEEECHHH
T ss_conf 24787875267---887699845554024589987053089987647999999999965868868998465748777878
Q ss_pred HHHHHHHHCCCCCCCCCC-CHHHHHHHHHHHHHHHCCCCCEEEECCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 999998703699778889-1899999999999862159542887893999867888312575348004589996828944
Q 002515 191 IALAEMALETNDLWDEND-PWARFVMNALKAKEFYRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKI 269 (913)
Q Consensus 191 ~~~~e~~~~~~~l~~~~~-~~~~~i~~Al~A~~l~~~d~dYiV~~g~I~ivD~~TGRi~~gr~ws~GLHQaieaKEgv~i 269 (913)
+.++|+++++.|||++.+ +|.+||++||+|+++|++|+||||+||+|+|||++|||+|+|||||+||||||||||||+|
T Consensus 311 ~~~~E~~l~i~nly~~~n~~l~~~i~~AL~A~~l~~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaKEgv~i 390 (822)
T 3jux_A 311 VAKAEKIIGVENLYDPGNVSLLYHLINALKALHLFKKDVDYVVMNGEVIIVDEFTGRLLPGRRYSGGLHQAIEAKEGVPI 390 (822)
T ss_dssp HHHHHHHHTCSCTTSGGGHHHHHHHHHHHHHHHHSTTTSSEEEETTEEEECSSSSCSCCCSCCCGGGHHHHHHHHHSSCC
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCC
T ss_conf 99999871875335433667999999999999987079847988997999978989689898076588999999749988
Q ss_pred CCCCEEEEEEEEHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCEEEECCCCCCCCCCCCCEEEECHHHHHHHHHHHHHHH
Q ss_conf 67860045554136772227422467885027999998809992990899975433599707709448999999999997
Q 002515 270 QADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESM 349 (913)
Q Consensus 270 ~~e~~t~a~Is~q~~f~~Y~kl~GmTGTa~te~~Ef~~iY~l~v~~IPt~~p~~R~d~pd~v~~t~~~k~~aii~ei~~~ 349 (913)
++||+|+|+|||||||++|++|+||||||++++.||.++|+++|++||||+|++|+|.|+.+|.+..+||.++++++.+.
T Consensus 391 ~~e~~tla~IT~Qn~Fr~Y~kL~GMTGTa~te~~Ef~~iY~l~vv~IPtnkp~~R~d~~d~vy~t~~eK~~al~~~I~~~ 470 (822)
T 3jux_A 391 KEESITYATITFQNYFRMYEKLAGMTGTAKTEESEFVQVYGMEVVVIPTHKPMIRKDHDDLVFRTQKEKYEKIVEEIEKR 470 (822)
T ss_dssp CCCCCEEEEECHHHHHTTSSEEEEEESSCGGGHHHHHHHSCCCEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHCCEEEEECCCCCCCEEECCCEEEECHHHHHHHHHHHHHHH
T ss_conf 87754267778999999722773888889569999999869819997799985346447178845789999999999988
Q ss_pred HHCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCCCCEEEECCCCCCCCCEECCCCHHHHH
Q ss_conf 75499499984242218999999997799727850698412419999986399762999728877884200599714778
Q 002515 350 FRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQAGRKYAITISTNMAGRGTDIILGGNPKMLA 429 (913)
Q Consensus 350 ~~~grpVLI~t~si~~se~ls~~L~~~gi~~~vLna~~k~~~~Ea~Iia~AG~~g~VTIATnmAGRGTDIkLgg~~~~~~ 429 (913)
+.+||||||||.|++.||.++..|.+.|++|++|||+ ++++|++++++||++|+||||||||||||||+|||
T Consensus 471 ~~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgk--q~~rE~~ii~~ag~~g~VtVATdmAgRGtDI~lg~------ 542 (822)
T 3jux_A 471 YKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAK--YHEKEAEIVAKAGQKGMVTIATNMAGRGTDIKLGP------ 542 (822)
T ss_dssp HHHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSC--HHHHHHHHHHHHHSTTCEEEEETTTTTTCCCCCCT------
T ss_pred HHCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEECC--CHHHHHHHHHHCCCCCEEEEECCHHHCCCCCCCCC------
T ss_conf 6079978999787899999999999779977981088--16899999996799984999766121874866886------
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999888754201223456789940024542033047999999998755134567740233221000144666544
Q 002515 430 KKIIEDRLLLLLTREALNVEVDDKTSSPKVLSEIKLGSSSLALLAKAALLAKYVGKAEGKSWTYQEAKSFFSESVEMSQS 509 (913)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (913)
T Consensus 543 -------------------------------------------------------------------------------- 542 (822)
T 3jux_A 543 -------------------------------------------------------------------------------- 542 (822)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCC
Q ss_conf 43899998873202579997146888887754332002334213451386289931589822367653012245899993
Q 002515 510 MNLKELQKLIDKQSAMYPLGPTVALTYLSVLKDCEVHCSNEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGS 589 (913)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTer~esrRid~QlrGRagRQGdpGs 589 (913)
+|.++||||||+|++|+|+|+|+|++|||||||+||+
T Consensus 543 -------------------------------------------~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~ 579 (822)
T 3jux_A 543 -------------------------------------------GVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGE 579 (822)
T ss_dssp -------------------------------------------TTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCE
T ss_pred -------------------------------------------CHHHCCCCEEEECCCCCCHHHHHHHHCCCCCCCCCEE
T ss_conf -------------------------------------------4100698879965799978888874276115989766
Q ss_pred EEEEEECCCHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 36998646035552058914799999652999998756417999999999999988799999989867888898899999
Q 002515 590 TRFMVSLQDEMFQKFSFDTSWAVDLISRITNDEDMPIEGDAIVRQLLGLQISAEKYYFGIRKSLVEFDEVLEVQRKHVYD 669 (913)
Q Consensus 590 s~f~lSleD~l~~~f~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~aQ~~vE~~~~~~Rk~~~~yd~v~~~QR~~IY~ 669 (913)
|+||+|+||++|++|| ++++.++|.++++++++||+|+|++++|++||++||++||++||++++||+|||.||++||+
T Consensus 580 a~~fvsleD~l~r~fg--~~~~~~~m~~~~~~~~~~i~~~~v~~~ie~AQkkvE~~nf~~Rk~ll~yDdv~n~QR~~iY~ 657 (822)
T 3jux_A 580 SIFFLSLEDDLLRIFG--SEQIGKVMNILKIEEGQPIQHPMLSKLIENIQKKVEGINFSIRKTLMEMDDVLDKQRRAVYS 657 (822)
T ss_dssp EEEEEETTSHHHHHTT--HHHHHHHHHHSSCCSSSCBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECHHHHHHHHHH--HHHHHHHHHHCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999632178888631--89999999975999884642389999999999999985699999999888779999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHCCCCCCCHHHHHHCCCC
Q ss_conf 99987601877779999999999999998701799999875778899999999850010221106774201222101443
Q 002515 670 LRQSILTGANESCSQQIFQYMQAVVDEIIFGNVDPLKHPRYWSLDKLLKEFIAIAGKILDDLFAGISGDTLLKSIEELPE 749 (913)
Q Consensus 670 ~R~~iL~~~~~di~~~i~~~~~~~i~~~v~~~~~~~~~~~~w~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 749 (913)
+|++||.+ +++.+.|..|++++++.+++.+++ +++|++++|...+...+ .
T Consensus 658 ~R~~iL~~--~~~~~~i~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~----~-------------------- 707 (822)
T 3jux_A 658 LRDQILLE--KDYDEYLKDIFEDVVSTRVEEFCS----GKNWDIESLKNSLSFFP----A-------------------- 707 (822)
T ss_dssp HHHHHHHC--SCCHHHHHHHHHHHHHHHHHHHSS----TTCCCCHHHHHHTTTSC----S--------------------
T ss_pred HHHHHHCC--CCHHHHHHHHHHHHHHHHHHHHCC----HHHCCHHHHHHHHHHHH----C--------------------
T ss_conf 99998636--728999999999999999997278----10115999999999721----1--------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
Q ss_conf 33233457778999999863222122231123444312565433445421368999999999999999887731189899
Q 002515 750 LNSIDINNFYFPDLPKPPNLFRGIRRKSSSLKRWLAICSDDLTKNGRYRATTNLLRKYLGDILIASYLNVVQESRYDDVY 829 (913)
Q Consensus 750 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~e~~~~~y~~k~~~~~~~~e~ 829 (913)
..+.... . .....+++++++.+.+.+.|..+.+ ..+++
T Consensus 708 -------------~~~~~~~-~-------------------------~~~~~~~~~~~l~~~~~~~y~~k~~--~~~~~- 745 (822)
T 3jux_A 708 -------------GLFDLDE-K-------------------------QFSSSEELHDYLFNRLWEEYQRKKQ--EIGED- 745 (822)
T ss_dssp -------------CSCTTSS-C-------------------------CCSSHHHHHHHHHHHHHHHHHHHHH--HHGGG-
T ss_pred -------------CCCCCCC-C-------------------------CCCCHHHHHHHHHHHHHHHHHHHHH--HHHHH-
T ss_conf -------------2467664-4-------------------------4479999999999999999999999--86699-
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 99999999999996999999999998997600011247892798999999999999999999999984713447
Q 002515 830 MKEVERAVLVKTLDCFWRDHLINMNRLSSAVNVRSFGHRNPLEEYKIDGCRFFISMLSATRRLTVESLVQYWSS 903 (913)
Q Consensus 830 ~~~~eR~ilL~aID~~W~eHLd~Md~LRegI~LRsYgQkDPL~EYk~EAf~lF~~M~~~Ik~~iv~~Ll~~~~~ 903 (913)
+++++|.+||++||.+|++||++||+||+|||||+||||||++|||+|||+||+.|+.+|+.+++.+++++.-.
T Consensus 746 ~~~~er~i~L~~iD~~W~~hl~~md~Lr~~i~lr~y~q~dPl~eyk~e~~~~F~~m~~~i~~~~~~~~~~~~~~ 819 (822)
T 3jux_A 746 YRKVIRFLMLRIIDDHWRRYLEEVEHVKEAVQLRSYGQKDPIVEFKKETYYMFDEMMRRINDTIANYVLRVHHH 819 (822)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99999999999998999999999999999975463625896899999999999999999999999999997402
No 3
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=1.00 E-value=1 Score=1574.68 Aligned_cols=756 Identities=43% Similarity=0.694 Sum_probs=686.2
Q ss_pred CCCCHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf 99822679999997269867833798369999999999997499679996498889998999999764409949997279
Q 002515 1 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRG 80 (913)
Q Consensus 1 ~rp~dvQl~g~l~L~~G~IaEm~TGEGKTLva~lpa~l~AL~G~~V~VvT~NdyLA~RD~e~~~~~y~~LGlsv~~i~~~ 80 (913)
|+|||||++|+++||+|+||||+|||||||+++||+|+++|.|++|||||||+|||.||++||+++|.+|||+|++++++
T Consensus 110 ~rP~~VQ~~~ip~Ll~G~Iaem~TGeGKTLa~~LP~~l~aL~g~~v~VvTpTreLA~Qdae~m~~l~~~lGLsv~~i~gg 189 (922)
T 1nkt_A 110 QRPFDVQVMGAAALHLGNVAEMKTGEGKTLTCVLPAYLNALAGNGVHIVTVNDYLAKRDSEWMGRVHRFLGLQVGVILAT 189 (922)
T ss_dssp CCCCHHHHHHHHHHHTTEEEECCTTSCHHHHTHHHHHHHHTTTSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTT
T ss_pred CCCCHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 99888999977868559789706897319999999999997289869995789999999999999986649869999699
Q ss_pred CCHHHHHHCCCCCEEEECCCCCHHHHHHHHHCCCHHHHHCCCCCCCEEEEEECCHHHHHCCCCCCEECCCCCCCCCCCHH
Q ss_conf 99988973228981898799503669887430031233306999840899604024431068975000378887755269
Q 002515 81 MIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYP 160 (913)
Q Consensus 81 ~~~~~r~~aY~~DI~YgT~~el~fDyLrD~l~~~~~~~v~r~~R~~~~~IVDEvDsiLiDea~tpLiiSg~~~~~~~~y~ 160 (913)
+++++++.+|+|||+||||++||||||||+|..+.+.+++| +++|+|||||||||+|+|+||||||||.+....+|.
T Consensus 190 ~~~~~r~~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr---~l~~lIVDEaDsmLiDeartPLiiSg~~~~~~~~y~ 266 (922)
T 1nkt_A 190 MTPDERRVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQR---GHHYAIVDEVDSILIDEARTPLIISGPADGASNWYT 266 (922)
T ss_dssp CCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCC---CCCEEEETTHHHHHTTGGGSCEEEEEECCCCHHHHH
T ss_pred CCHHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCHHHHCCC---CCCEEEEECHHHHHHHCCCCCEEECCCCCCCHHHHH
T ss_conf 99999998669998998861755899986543237661647---787899937678877347664121377875326999
Q ss_pred HHHHHHHHHCCCCCEEEECCCCEEECCHHHHHHHHHHHCCCCCCCCCC-CHHHHHHHHHHHHHHHCCCCCEEEECCEEEE
Q ss_conf 999999981038881886778746604835999998703699778889-1899999999999862159542887893999
Q 002515 161 VAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDEND-PWARFVMNALKAKEFYRRDVQYIVRNGKALI 239 (913)
Q Consensus 161 ~~~~~v~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~l~~~~~-~~~~~i~~Al~A~~l~~~d~dYiV~~g~I~i 239 (913)
.++.++..|.++.||.+|++.++++||++|+.++|+++++.+||++++ .+.++|.+||+|+.+|++|+||+|+||+|+|
T Consensus 267 ~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~l~~~d~dYiV~dg~vvi 346 (922)
T 1nkt_A 267 EFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKELFSRDKDYIVRDGEVLI 346 (922)
T ss_dssp HHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHHHCCBTTTEEECSSCEEE
T ss_pred HHHHHHHHCCCCCCCEECCCCCEEEECHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCCEEE
T ss_conf 99999995754445501047636996576799999982974236872206789999999999874036400420683688
Q ss_pred EECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEEEHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCEEEECCC
Q ss_conf 86788831257534800458999682894467860045554136772227422467885027999998809992990899
Q 002515 240 INELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPVIEVPTN 319 (913)
Q Consensus 240 vD~~TGRi~~gr~ws~GLHQaieaKEgv~i~~e~~t~a~Is~q~~f~~Y~kl~GmTGTa~te~~Ef~~iY~l~v~~IPt~ 319 (913)
||++|||+|+|||||+|||||||+||+++|++++.|+++||+||||++|++|+||||||++++.||.++|+++|++||||
T Consensus 347 VDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te~~Ef~~iY~l~vv~IPtn 426 (922)
T 1nkt_A 347 VDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTEAAELHEIYKLGVVSIPTN 426 (922)
T ss_dssp BCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGGHHHHHHHHCCEEEECCCS
T ss_pred EECCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCEEEECCC
T ss_conf 75013751678634304668886114650156652344122388887655663066675558999999849876993899
Q ss_pred CCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHH
Q ss_conf 97543359970770944899999999999775499499984242218999999997799727850698412419999986
Q 002515 320 LPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQ 399 (913)
Q Consensus 320 ~p~~R~d~pd~v~~t~~~k~~aii~ei~~~~~~grpVLI~t~si~~se~ls~~L~~~gi~~~vLna~~k~~~~Ea~Iia~ 399 (913)
+|++|+|+||.+|.+..+||.++++++.++|..||||||||.|++.||.|+..|++.|++|++|||+ ++++|++|+++
T Consensus 427 ~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLnak--~~~rEa~iia~ 504 (922)
T 1nkt_A 427 MPMIREDQSDLIYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAK--YHEQEATIIAV 504 (922)
T ss_dssp SCCCCEECCCEEESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSS--CHHHHHHHHHT
T ss_pred CCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEECCC--HHHHHHHHHHH
T ss_conf 9855304786798478999999999999987269968999797999999999999779988981197--16899999996
Q ss_pred CCCCCCEEEECCCCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHH
Q ss_conf 39976299972887788420059971477899999999888754201223456789940024542033047999999998
Q 002515 400 AGRKYAITISTNMAGRGTDIILGGNPKMLAKKIIEDRLLLLLTREALNVEVDDKTSSPKVLSEIKLGSSSLALLAKAALL 479 (913)
Q Consensus 400 AG~~g~VTIATnmAGRGTDIkLgg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (913)
||++|+||||||||||||||++|||++++++..++...+. |.
T Consensus 505 agr~G~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~------~~-------------------------------- 546 (922)
T 1nkt_A 505 AGRRGGVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLD------PV-------------------------------- 546 (922)
T ss_dssp TTSTTCEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCC------TT--------------------------------
T ss_pred CCCCCEEEEECCHHHCCCCCCCCCCHHHHHHHHHHHCCCC------CC--------------------------------
T ss_conf 6999849983661315835557898889999887651366------54--------------------------------
Q ss_pred HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHCCC
Q ss_conf 75513456774023322100014466654443899998873202579997146888887754332002334213451386
Q 002515 480 AKYVGKAEGKSWTYQEAKSFFSESVEMSQSMNLKELQKLIDKQSAMYPLGPTVALTYLSVLKDCEVHCSNEGSEVKRLGG 559 (913)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GG 559 (913)
. .++ .....|...+.+++..|..++++|+++||
T Consensus 547 ---------------------~---------~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~V~~~GG 579 (922)
T 1nkt_A 547 ---------------------E---------TPE-----------------EYEAAWHSELPIVKEEASKEAKEVIEAGG 579 (922)
T ss_dssp ---------------------T---------SHH-----------------HHHHHHHHHHHHHHHHTTHHHHHHHHTTS
T ss_pred ---------------------C---------CCH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf ---------------------4---------522-----------------56777788999999999876667875387
Q ss_pred EEEEECCCCCCHHHHHHHHCCCCCCCCCCCEEEEEECCCHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 28993158982236765301224589999336998646035552058914799999652999998756417999999999
Q 002515 560 LHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDTSWAVDLISRITNDEDMPIEGDAIVRQLLGLQ 639 (913)
Q Consensus 560 L~VIgTer~esrRid~QlrGRagRQGdpGss~f~lSleD~l~~~f~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~aQ 639 (913)
||||||+||+|+|+|+|+|||||||||||+|+||+|++|+|||+|| ++++..+|.++++++++||+++|++++|++||
T Consensus 580 lhVI~te~pes~riy~qr~GRTGRqGdpG~s~fflSleD~l~r~f~--~~~~~~~~~~~~~~~~~~i~~~~~~~~ie~aQ 657 (922)
T 1nkt_A 580 LYVLGTERHESRRIDNQLRGRSGRQGDPGESRFYLSLGDELMRRFN--GAALETLLTRLNLPDDVPIEAKMVTRAIKSAQ 657 (922)
T ss_dssp EEEEECSCCSSHHHHHHHHHTSSGGGCCEEEEEEEETTSHHHHHTT--HHHHHHHHHHTTCCTTSCCCCHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHCCCCCCCCCEEEEEEECHHHHHHHHHH--HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH
T ss_conf 6798526899889998870553669998159999653688999861--58899999980899876545389999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH-HCCCCCCCCCCCCHHHHHH
Q ss_conf 999988799999989867888898899999999876018777799999999999999987-0179999987577889999
Q 002515 640 ISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSILTGANESCSQQIFQYMQAVVDEIIF-GNVDPLKHPRYWSLDKLLK 718 (913)
Q Consensus 640 ~~vE~~~~~~Rk~~~~yd~v~~~QR~~IY~~R~~iL~~~~~di~~~i~~~~~~~i~~~v~-~~~~~~~~~~~w~~~~l~~ 718 (913)
++||++||++||++++||+|||.||++||++|++||.+ +++.+.|..|++++++++|+ .+ +...+++|++++|..
T Consensus 658 kkvE~~nf~iRk~ll~yDdv~n~QR~~iY~~R~~iL~~--~~~~~~i~~~~~~~~~~~v~~~~--~~~~~~~w~~~~l~~ 733 (922)
T 1nkt_A 658 TQVEQQNFEVRKNVLKYDEVMNQQRKVIYAERRRILEG--ENLKDQALDMVRDVITAYVDGAT--GEGYAEDWDLDALWT 733 (922)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--CCCHHHHHHHHHHHHHHHHHHTT--SSSCSSCSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHHHHHHC--CCCCCHHCCHHHHHH
T ss_conf 99876418999999988999999999999999999727--86799999999999999998754--457800117999999
Q ss_pred HHHHHHCCCHHHHHCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCC
Q ss_conf 99998500102211067742012221014433323345777899999986322212223112344431256543344542
Q 002515 719 EFIAIAGKILDDLFAGISGDTLLKSIEELPELNSIDINNFYFPDLPKPPNLFRGIRRKSSSLKRWLAICSDDLTKNGRYR 798 (913)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 798 (913)
.+...++..++ . .+|... ++. .....
T Consensus 734 ~~~~~~~~~~~-------~-------------------------------------------~~~~~~--~~~--~~~~~ 759 (922)
T 1nkt_A 734 ALKTLYPVGIT-------A-------------------------------------------DSLTRK--DHE--FERDD 759 (922)
T ss_dssp HHHHHSCCCSC-------T-------------------------------------------TTTC--------------
T ss_pred HHHHHCCCCCC-------H-------------------------------------------HHHHHH--HCC--CCCCC
T ss_conf 99997287889-------7-------------------------------------------887543--022--23346
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
Q ss_conf 13689999999999999998877311--8989999999999999996999999999998997600011247892798999
Q 002515 799 ATTNLLRKYLGDILIASYLNVVQESR--YDDVYMKEVERAVLVKTLDCFWRDHLINMNRLSSAVNVRSFGHRNPLEEYKI 876 (913)
Q Consensus 799 ~~~~~~~~~l~e~~~~~y~~k~~~~~--~~~e~~~~~eR~ilL~aID~~W~eHLd~Md~LRegI~LRsYgQkDPL~EYk~ 876 (913)
...+++++++.+.+.+.|..+..... .+++.++++||.+||++||.+|++||++||+||+|||||+||||||++|||+
T Consensus 760 ~~~~~~~~~l~~~~~~~y~~k~~~~~~~~~~~~~~~~er~~~L~~iD~~W~eHl~~md~Lr~~i~lr~y~q~dPl~eyk~ 839 (922)
T 1nkt_A 760 LTREELLEALLKDAERAYAAREAELEEIAGEGAMRQLERNVLLNVIDRKWREHLYEMDYLKEGIGLRAMAQRDPLVEYQR 839 (922)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCBTTBCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 99999999999999999999998741347989999999999999998999999999999999875453436997999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 999999999999999999984713447665
Q 002515 877 DGCRFFISMLSATRRLTVESLVQYWSSPME 906 (913)
Q Consensus 877 EAf~lF~~M~~~Ik~~iv~~Ll~~~~~~~~ 906 (913)
|||+||+.|+.+|+.++++++|++++....
T Consensus 840 e~~~~F~~m~~~i~~~~~~~l~~~~~~~~~ 869 (922)
T 1nkt_A 840 EGYDMFMAMLDGMKEESVGFLFNVTVEAVP 869 (922)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 999999999999999999999846636777
No 4
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=1.00 E-value=1 Score=1520.44 Aligned_cols=737 Identities=41% Similarity=0.659 Sum_probs=679.8
Q ss_pred CCCCHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf 99822679999997269867833798369999999999997499679996498889998999999764409949997279
Q 002515 1 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRG 80 (913)
Q Consensus 1 ~rp~dvQl~g~l~L~~G~IaEm~TGEGKTLva~lpa~l~AL~G~~V~VvT~NdyLA~RD~e~~~~~y~~LGlsv~~i~~~ 80 (913)
|+|||||++|+++||+|+||||+||+|||++++||++++++.|++|||+|||+|||.||++||+++|.++|++|++++++
T Consensus 73 ~~p~~VQ~~~i~~ll~G~Iaem~TGsGKTlaf~LP~l~~~l~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~GG 152 (853)
T 2fsf_A 73 MRHFDVQLLGGMVLNERCIAEMRTGEGKTLTATLPAYLNALTGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPG 152 (853)
T ss_dssp CCCCHHHHHHHHHHHSSEEEECCTTSCHHHHHHHHHHHHHTTSSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTT
T ss_pred CCCCHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 99886888336213377066406985589999999999997199479985879999999999999997649869999599
Q ss_pred CCHHHHHHCCCCCEEEECCCCCHHHHHHHHHCCCHHHHHCCCCCCCEEEEEECCHHHHHCCCCCCEECCCCCCCCCCCHH
Q ss_conf 99988973228981898799503669887430031233306999840899604024431068975000378887755269
Q 002515 81 MIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYP 160 (913)
Q Consensus 81 ~~~~~r~~aY~~DI~YgT~~el~fDyLrD~l~~~~~~~v~r~~R~~~~~IVDEvDsiLiDea~tpLiiSg~~~~~~~~y~ 160 (913)
+++++++.+|+|||+||||++||||||||+|..+.+.++++ +++|+||||||+||+|+|++|||||||.+..+.+|.
T Consensus 153 ~~~~~r~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~---~l~~lVlDEaD~mLiD~a~tpLIiSg~~~~~~~~y~ 229 (853)
T 2fsf_A 153 MPAPAKREAYAADITYGTNNEYGFDYLRDNMAFSPEERVQR---KLHYALVDEVDSILIDEARTPLIISGPAEDSSEMYK 229 (853)
T ss_dssp CCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCC---SCCEEEESCHHHHTTTTTTCEEEEEEC---------
T ss_pred CCHHHHHHHCCCCEEEECCCHHHHHHHHHHHHCCHHHHCCC---CCCEEEECCHHHHHHHCCCCCCCCCCCCCCCHHHHH
T ss_conf 99999998649998998870556899985332458671426---886899875677887357664100578864045999
Q ss_pred HHHHHHHHHCCC-----------CCEEEECCCCEEECCHHHHHHHHHHH---CC----CCCCCCCC-CHHHHHHHHHHHH
Q ss_conf 999999981038-----------88188677874660483599999870---36----99778889-1899999999999
Q 002515 161 VAAKVAELLVQG-----------LHYTVELKNNSVELTEEGIALAEMAL---ET----NDLWDEND-PWARFVMNALKAK 221 (913)
Q Consensus 161 ~~~~~v~~l~~~-----------~~y~~d~~~k~v~Lt~~G~~~~e~~~---~~----~~l~~~~~-~~~~~i~~Al~A~ 221 (913)
.++.++..|.++ .||.+|++.++++||+.|+.++|+++ ++ .+||++++ .+.+||++||+|+
T Consensus 230 ~i~~iv~~L~~~~~~~~~~~~~~~dy~vdek~rqv~lte~g~~~~e~~l~~~~l~~~~~~Lfsat~~~~~~~i~~al~A~ 309 (853)
T 2fsf_A 230 RVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYSPANIMLMHHVTAALRAH 309 (853)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHCHHHHCCCCCCCCCCCCCEECCCCCEEEECHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 99999996522002333345666652352344469976778999999987577655664456861104789999999999
Q ss_pred HHHCCCCCEEEECCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEEEHHHHHHCCCCCCCCCCCCCH
Q ss_conf 86215954288789399986788831257534800458999682894467860045554136772227422467885027
Q 002515 222 EFYRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTE 301 (913)
Q Consensus 222 ~l~~~d~dYiV~~g~I~ivD~~TGRi~~gr~ws~GLHQaieaKEgv~i~~e~~t~a~Is~q~~f~~Y~kl~GmTGTa~te 301 (913)
.+|++|+||+|+||+|+|||++|||+|+|||||+||||||||||+++|++++.|+++||+|+||++|++|+||||||+|+
T Consensus 310 ~l~~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaieake~v~I~~e~~tla~It~qnyfr~Y~kl~GmTGTa~te 389 (853)
T 2fsf_A 310 ALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQTLASITFQNYFRLYEKLAGMTGTADTE 389 (853)
T ss_dssp -----------------------------------------------CCCCCEEEEEEEHHHHHTTSSEEEEEECTTCCC
T ss_pred HHHHCCCCCEEECCCEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCEECCCCCCCCEEEHHHHHHHHHHHHCCCCCCHHH
T ss_conf 87403730053168179974235744678755234557887124631046641333121687886655662077776458
Q ss_pred HHHHHHHHCCCEEEECCCCCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCCEE
Q ss_conf 99999880999299089997543359970770944899999999999775499499984242218999999997799727
Q 002515 302 EKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHN 381 (913)
Q Consensus 302 ~~Ef~~iY~l~v~~IPt~~p~~R~d~pd~v~~t~~~k~~aii~ei~~~~~~grpVLI~t~si~~se~ls~~L~~~gi~~~ 381 (913)
+.||.++||++|++||||+|++|+|+||.+|.+..+||.++++++..+|..||||||||.|++.||.|+..|++.|++|+
T Consensus 390 ~~ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~~~~~K~~al~~~i~~~~~~gqpvLVft~sie~se~Ls~~L~~~gi~~~ 469 (853)
T 2fsf_A 390 AFEFSSIYKLDTVVVPTNRPMIRKDLPDLVYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKAGIKHN 469 (853)
T ss_dssp HHHHHHHHCCEEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHTTCCCE
T ss_pred HHHHHHHHCCCEEECCCCCCCEEECCCCEEEECHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHCCCCEE
T ss_conf 99999985985798689997203327967983899999999999998752799789997938999999999997799889
Q ss_pred EECCCCCCHHHHHHHHHHCCCCCCEEEECCCCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHH
Q ss_conf 85069841241999998639976299972887788420059971477899999999888754201223456789940024
Q 002515 382 VLNARPKYAAREAETVAQAGRKYAITISTNMAGRGTDIILGGNPKMLAKKIIEDRLLLLLTREALNVEVDDKTSSPKVLS 461 (913)
Q Consensus 382 vLna~~k~~~~Ea~Iia~AG~~g~VTIATnmAGRGTDIkLgg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (913)
+|||+ ++++|++|+++||++|+||||||||||||||++||||++++... . +.
T Consensus 470 vLnak--~~~rEa~iia~agr~G~VtIATnmAgRGtDI~l~gn~~~~~~~~---------~-~~---------------- 521 (853)
T 2fsf_A 470 VLNAK--FHANEAAIVAQAGYPAAVTIATNMAGRGTDIVLGGSWQAEVAAL---------E-NP---------------- 521 (853)
T ss_dssp ECCTT--CHHHHHHHHHTTTSTTCEEEEESCCSSCSCCCTTCCHHHHHHHC---------S-SC----------------
T ss_pred EECCC--HHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHC---------C-CC----------------
T ss_conf 84097--26999999996599983998655002885741898567654201---------2-21----------------
Q ss_pred HHHHCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
Q ss_conf 54203304799999999875513456774023322100014466654443899998873202579997146888887754
Q 002515 462 EIKLGSSSLALLAKAALLAKYVGKAEGKSWTYQEAKSFFSESVEMSQSMNLKELQKLIDKQSAMYPLGPTVALTYLSVLK 541 (913)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (913)
+ .+.+.
T Consensus 522 -----------------------------------------------------------------~---------~~~~~ 527 (853)
T 2fsf_A 522 -----------------------------------------------------------------T---------AEQIE 527 (853)
T ss_dssp -----------------------------------------------------------------C---------SSHHH
T ss_pred -----------------------------------------------------------------H---------HHHHH
T ss_conf -----------------------------------------------------------------2---------67899
Q ss_pred HHHHCCCCCCHHHHHCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCCEEEEEECCCHHHHHCCCCCHHHHHHHHHCCCC
Q ss_conf 33200233421345138628993158982236765301224589999336998646035552058914799999652999
Q 002515 542 DCEVHCSNEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDTSWAVDLISRITND 621 (913)
Q Consensus 542 ~~~~~~~~~~~~V~~~GGL~VIgTer~esrRid~QlrGRagRQGdpGss~f~lSleD~l~~~f~~~~~~~~~~~~~~~~~ 621 (913)
+++..|..++++|.++||||||||++|+|+|+|+|+|||||||||||+|+||+|++|++||.|| ++++..+|.+++++
T Consensus 528 ~~~~~~~~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s~~fls~eD~l~r~f~--~~~~~~~~~~~~~~ 605 (853)
T 2fsf_A 528 KIKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMEDALMRIFA--SDRVSGMMRKLGMK 605 (853)
T ss_dssp HHHHHHHHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSGGGGTTC--CHHHHTTGGGGCCC
T ss_pred HHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHCCCCCCCCCCEEEEEEECCCHHHHHHHH--HHHHHHHHHHHCCC
T ss_conf 9988765544678861872899725998889997600431358997059999654288898753--78999999860799
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99875641799999999999998879999998986788889889999999987601877779999999999999998701
Q 002515 622 EDMPIEGDAIVRQLLGLQISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSILTGANESCSQQIFQYMQAVVDEIIFGN 701 (913)
Q Consensus 622 ~~~~i~~~~~~~~i~~aQ~~vE~~~~~~Rk~~~~yd~v~~~QR~~IY~~R~~iL~~~~~di~~~i~~~~~~~i~~~v~~~ 701 (913)
+++||+++++++++++||++||++||++||++++||+|||.||++||++|+++|.+ +++.+.|..|++++++++|+.+
T Consensus 606 ~~~~i~~~~~~~~i~~aq~~ve~~~~~~Rk~ll~yddv~n~QR~~iy~~R~~~l~~--~~~~~~i~~~~~~~~~~~~~~~ 683 (853)
T 2fsf_A 606 PGEAIEHPWVTKAIANAQRKVESRNFDIRKQLLEYDDVANDQRRAIYSQRNELLDV--SDVSETINSIREDVFKATIDAY 683 (853)
T ss_dssp TTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHHHHHH
T ss_conf 84323349999999988877642156888889989999999999999999999737--8579999999999999999985
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 79999987577889999999985001022110677420122210144333233457778999999863222122231123
Q 002515 702 VDPLKHPRYWSLDKLLKEFIAIAGKILDDLFAGISGDTLLKSIEELPELNSIDINNFYFPDLPKPPNLFRGIRRKSSSLK 781 (913)
Q Consensus 702 ~~~~~~~~~w~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 781 (913)
+++...+++|++++|...+...++..+ .+.
T Consensus 684 ~~~~~~~~~w~~~~l~~~~~~~~~~~~--------------------------------------------------~~~ 713 (853)
T 2fsf_A 684 IPPQSLEEMWDIPGLQERLKNDFDLDL--------------------------------------------------PIA 713 (853)
T ss_dssp SCTTCCGGGCCHHHHHHHHHHHHCCCC--------------------------------------------------CHH
T ss_pred CCCCCCCHHHCHHHHHHHHHHHCCCCC--------------------------------------------------CHH
T ss_conf 586556002059999999998728788--------------------------------------------------878
Q ss_pred HHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 44431256543344542136899999999999999988773118989999999999999996999999999998997600
Q 002515 782 RWLAICSDDLTKNGRYRATTNLLRKYLGDILIASYLNVVQESRYDDVYMKEVERAVLVKTLDCFWRDHLINMNRLSSAVN 861 (913)
Q Consensus 782 ~~~~~~~d~~~~~~~~~~~~~~~~~~l~e~~~~~y~~k~~~~~~~~e~~~~~eR~ilL~aID~~W~eHLd~Md~LRegI~ 861 (913)
+|... + .....+++++++.+.+.+.|..+. ...+++.+++++|.+||++||.+|++||++||+||+|||
T Consensus 714 ~~~~~--~-------~~~~~~~~~~~~~~~~~~~~~~k~--~~~~~~~~~~~er~~~L~~iD~~W~~hl~~md~Lr~~i~ 782 (853)
T 2fsf_A 714 EWLDK--E-------PELHEETLRERILAQSIEVYQRKE--EVVGAEMMRHFEKGVMLQTLDSLWKEHLAAMDYLRQGIH 782 (853)
T ss_dssp HHHHH--C-------TTCCHHHHHHHHHHHHHHHHHHHH--HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHH--C-------CCCCHHHHHHHHHHHHHHHHHHHH--HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 87543--0-------359999999999999999999998--753999999999999999998999999999999999875
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 0112478927989999999999999999999999847134476653
Q 002515 862 VRSFGHRNPLEEYKIDGCRFFISMLSATRRLTVESLVQYWSSPMES 907 (913)
Q Consensus 862 LRsYgQkDPL~EYk~EAf~lF~~M~~~Ik~~iv~~Ll~~~~~~~~~ 907 (913)
||+||||||++|||+|||+||+.|+.+|+.++++++|++++...+.
T Consensus 783 lr~y~q~dP~~ey~~e~~~~F~~m~~~i~~~~~~~l~~~~~~~~~~ 828 (853)
T 2fsf_A 783 LRGYAQKDPKQEYKRESFSMFAAMLESLKYEVISTLSKVQVRMPEE 828 (853)
T ss_dssp TSSCSSSCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC--
T ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 4525369979999999999999999999999999998460887411
No 5
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=1.00 E-value=1 Score=1455.98 Aligned_cols=703 Identities=43% Similarity=0.723 Sum_probs=660.7
Q ss_pred CCCCHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf 99822679999997269867833798369999999999997499679996498889998999999764409949997279
Q 002515 1 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRG 80 (913)
Q Consensus 1 ~rp~dvQl~g~l~L~~G~IaEm~TGEGKTLva~lpa~l~AL~G~~V~VvT~NdyLA~RD~e~~~~~y~~LGlsv~~i~~~ 80 (913)
++|||||++|+++||+|+||||+|||||||+++||+|+++|.|++|||+|||+|||.||++||+++|.++|++|++++++
T Consensus 82 ~~pt~VQ~~~ip~ll~G~Iaea~TGeGKTlaf~LP~~l~aL~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i~gg 161 (844)
T 1tf5_A 82 MFPFKVQLMGGVALHDGNIAEMKTGEGKTLTSTLPVYLNALTGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNS 161 (844)
T ss_dssp CCCCHHHHHHHHHHHTTSEEECCTTSCHHHHHHHHHHHHHTTSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTT
T ss_pred CCCCHHHHHHHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 99767999766787289778705982789999999999987289889996989999999999999986659849999699
Q ss_pred CCHHHHHHCCCCCEEEECCCCCHHHHHHHHHCCCHHHHHCCCCCCCEEEEEECCHHHHHCCCCCCEECCCCCCCCCCCHH
Q ss_conf 99988973228981898799503669887430031233306999840899604024431068975000378887755269
Q 002515 81 MIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYP 160 (913)
Q Consensus 81 ~~~~~r~~aY~~DI~YgT~~el~fDyLrD~l~~~~~~~v~r~~R~~~~~IVDEvDsiLiDea~tpLiiSg~~~~~~~~y~ 160 (913)
+++++++.+|+|||+||||++||||||+|+|..+.+..+++ +++|+|||||||||+|+|+|||||||+.+.++.+|.
T Consensus 162 ~~~~~r~~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr---~~~~lVlDEaD~mLiDea~tplIisg~~~~~~~~~~ 238 (844)
T 1tf5_A 162 MSKDEKREAYAADITYSTNNELGFDYLRDNMVLYKEQMVQR---PLHFAVIDEVDSILIDEARTPLIISGQAAKSTKLYV 238 (844)
T ss_dssp SCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCC---CCCEEEEETHHHHHTTTTTCEEEEEEEEECCCHHHH
T ss_pred CCHHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCHHHHCCC---CCCEEEECCHHHHHHHCCCCCHHHCCCCCCCHHHHH
T ss_conf 99999998659998998953545799987553145552646---787899885655423003210010587632125899
Q ss_pred HHHHHHHHHCCCCCEEEECCCCEEECCHHHHHHHHHHHCCCCCCCCCC-CHHHHHHHHHHHHHHHCCCCCEEEECCEEEE
Q ss_conf 999999981038881886778746604835999998703699778889-1899999999999862159542887893999
Q 002515 161 VAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDEND-PWARFVMNALKAKEFYRRDVQYIVRNGKALI 239 (913)
Q Consensus 161 ~~~~~v~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~l~~~~~-~~~~~i~~Al~A~~l~~~d~dYiV~~g~I~i 239 (913)
.++.++..+.++.||.+|++.++++||++|+.++|.++++.+||++++ .|.++|.+|++|+.+|++|+||+|+||+|+|
T Consensus 239 ~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~l~~~d~dYiv~dg~v~i 318 (844)
T 1tf5_A 239 QANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQKDVDYVVEDGQVVI 318 (844)
T ss_dssp HHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHHTCCBTTTEEEETTEEEE
T ss_pred HHHHHHHHCCCCCCCEECCCCCEEEECHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCEEEE
T ss_conf 99999995764456312135415996487799999983952237885530699999999999874238860775580687
Q ss_pred EECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEEEHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCEEEECCC
Q ss_conf 86788831257534800458999682894467860045554136772227422467885027999998809992990899
Q 002515 240 INELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPVIEVPTN 319 (913)
Q Consensus 240 vD~~TGRi~~gr~ws~GLHQaieaKEgv~i~~e~~t~a~Is~q~~f~~Y~kl~GmTGTa~te~~Ef~~iY~l~v~~IPt~ 319 (913)
||++|||+|+||+||+|||||||+||+++|++++.|+++||+|+||++|++++||||||++++.||.++|+++|+.||||
T Consensus 319 vDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te~~e~~~iY~l~vv~IPtn 398 (844)
T 1tf5_A 319 VDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEFRNIYNMQVVTIPTN 398 (844)
T ss_dssp BCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGGHHHHHHHHCCCEEECCCS
T ss_pred EECCCCCCCCCCCCCHHHHHHHHHCCCCEECCCCCCCCEEEHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCEEEECCC
T ss_conf 52002651578736636678886224501045642332010788898876530677665046999999848863883689
Q ss_pred CCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHH
Q ss_conf 97543359970770944899999999999775499499984242218999999997799727850698412419999986
Q 002515 320 LPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQ 399 (913)
Q Consensus 320 ~p~~R~d~pd~v~~t~~~k~~aii~ei~~~~~~grpVLI~t~si~~se~ls~~L~~~gi~~~vLna~~k~~~~Ea~Iia~ 399 (913)
+|++|.|+++.+|.+..+|+.++++++.++|..||||||||.|++.||.|+..|...|++|++|||+ ++++|++++++
T Consensus 399 ~p~~r~d~~d~v~~~~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~--~~~rEr~ii~~ 476 (844)
T 1tf5_A 399 RPVVRDDRPDLIYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAK--NHEREAQIIEE 476 (844)
T ss_dssp SCCCCEECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSS--CHHHHHHHHTT
T ss_pred CCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEECC--CCHHHHHHHHH
T ss_conf 9852246774798378999999999999987369968999787999999999999789988986488--52999999997
Q ss_pred CCCCCCEEEECCCCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHH
Q ss_conf 39976299972887788420059971477899999999888754201223456789940024542033047999999998
Q 002515 400 AGRKYAITISTNMAGRGTDIILGGNPKMLAKKIIEDRLLLLLTREALNVEVDDKTSSPKVLSEIKLGSSSLALLAKAALL 479 (913)
Q Consensus 400 AG~~g~VTIATnmAGRGTDIkLgg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (913)
||++|+||||||||||||||+||
T Consensus 477 ag~~g~VlIATdmAgRG~DI~l~--------------------------------------------------------- 499 (844)
T 1tf5_A 477 AGQKGAVTIATNMAGRGTDIKLG--------------------------------------------------------- 499 (844)
T ss_dssp TTSTTCEEEEETTSSTTCCCCCC---------------------------------------------------------
T ss_pred CCCCCEEEEECCCCCCCCCCCCC---------------------------------------------------------
T ss_conf 69998399858742367574565---------------------------------------------------------
Q ss_pred HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHCCC
Q ss_conf 75513456774023322100014466654443899998873202579997146888887754332002334213451386
Q 002515 480 AKYVGKAEGKSWTYQEAKSFFSESVEMSQSMNLKELQKLIDKQSAMYPLGPTVALTYLSVLKDCEVHCSNEGSEVKRLGG 559 (913)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GG 559 (913)
++|+++||
T Consensus 500 ------------------------------------------------------------------------~~V~~~gg 507 (844)
T 1tf5_A 500 ------------------------------------------------------------------------EGVKELGG 507 (844)
T ss_dssp ------------------------------------------------------------------------TTSGGGTS
T ss_pred ------------------------------------------------------------------------CHHHHCCC
T ss_conf ------------------------------------------------------------------------20221587
Q ss_pred EEEEECCCCCCHHHHHHHHCCCCCCCCCCCEEEEEECCCHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 28993158982236765301224589999336998646035552058914799999652999998756417999999999
Q 002515 560 LHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDTSWAVDLISRITNDEDMPIEGDAIVRQLLGLQ 639 (913)
Q Consensus 560 L~VIgTer~esrRid~QlrGRagRQGdpGss~f~lSleD~l~~~f~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~aQ 639 (913)
||||+|++|+|+|+|+|++||||||||||+|+||+|++|++|+.|+ ++++..+|.++++++++||+++++++++++||
T Consensus 508 l~VIn~d~p~s~r~y~hr~GRTGRqG~~G~s~~~vs~eD~l~r~f~--~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~aq 585 (844)
T 1tf5_A 508 LAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMEDELMRRFG--AERTMAMLDRFGMDDSTPIQSKMVSRAVESSQ 585 (844)
T ss_dssp EEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSSGGGSSH--HHHHHHHHHHHTCCSSSCBCCHHHHHHHHHHH
T ss_pred CEEEEECCCCCHHHHHHHCCCCCCCCCCCEEEEEECHHHHHHHHHH--HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 6899706998889997510740458999748999648898999876--89998889861899843133289999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH
Q ss_conf 99998879999998986788889889999999987601877779999999999999998701799999875778899999
Q 002515 640 ISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSILTGANESCSQQIFQYMQAVVDEIIFGNVDPLKHPRYWSLDKLLKE 719 (913)
Q Consensus 640 ~~vE~~~~~~Rk~~~~yd~v~~~QR~~IY~~R~~iL~~~~~di~~~i~~~~~~~i~~~v~~~~~~~~~~~~w~~~~l~~~ 719 (913)
+++|++||++||++++||+|||.||++||++|+++|.+ +++.+.|..|++++++++|+.+.++...+++|++++|...
T Consensus 586 ~~ve~~~~~~rk~ll~yddv~~~QR~~iy~~R~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~l~~~ 663 (844)
T 1tf5_A 586 KRVEGNNFDSRKQLLQYDDVLRQQREVIYKQRFEVIDS--ENLREIVENMIKSSLERAIAAYTPREELPEEWKLDGLVDL 663 (844)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--SCCHHHHHHHHHHHHHHHHHHTSCSSCCTTCSSCCCHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHH
T ss_conf 88753117899999999999999999999999999728--9679999999999999999985577677001269999999
Q ss_pred HHHHHCCCHHHHHCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 99985001022110677420122210144333233457778999999863222122231123444312565433445421
Q 002515 720 FIAIAGKILDDLFAGISGDTLLKSIEELPELNSIDINNFYFPDLPKPPNLFRGIRRKSSSLKRWLAICSDDLTKNGRYRA 799 (913)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 799 (913)
+...++. .. .++. ++| ...
T Consensus 664 ~~~~~~~--~~---------------------------------~~~~-------------~~~-------------~~~ 682 (844)
T 1tf5_A 664 INTTYLD--EG---------------------------------ALEK-------------SDI-------------FGK 682 (844)
T ss_dssp HHTTTSC--TT---------------------------------SCSS-------------SSC-------------SSC
T ss_pred HHHHCCC--CC---------------------------------CCCH-------------HHH-------------HCC
T ss_conf 9986076--67---------------------------------9998-------------998-------------328
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH
Q ss_conf 36899999999999999988773118989999999999999996999999999998997600011247892798999999
Q 002515 800 TTNLLRKYLGDILIASYLNVVQESRYDDVYMKEVERAVLVKTLDCFWRDHLINMNRLSSAVNVRSFGHRNPLEEYKIDGC 879 (913)
Q Consensus 800 ~~~~~~~~l~e~~~~~y~~k~~~~~~~~e~~~~~eR~ilL~aID~~W~eHLd~Md~LRegI~LRsYgQkDPL~EYk~EAf 879 (913)
..+++++++.+.+.+.|..+.. ..+++.++++||.+||++||.+|++||++||+||+|||||+||||||++|||+|||
T Consensus 683 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~r~~~l~~~D~~W~~hl~~m~~lr~~i~lr~~~q~dp~~ey~~e~~ 760 (844)
T 1tf5_A 683 EPDEMLELIMDRIITKYNEKEE--QFGKEQMREFEKVIVLRAVDSKWMDHIDAMDQLRQGIHLRAYAQTNPLREYQMEGF 760 (844)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH--HSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGTSCSSSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
T ss_conf 9999999999999999999887--40999999999999999998999999999999998864423357897999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 9999999999999999847134476
Q 002515 880 RFFISMLSATRRLTVESLVQYWSSP 904 (913)
Q Consensus 880 ~lF~~M~~~Ik~~iv~~Ll~~~~~~ 904 (913)
+||+.|+.+|+.++++++|++++..
T Consensus 761 ~~f~~m~~~i~~~~~~~l~~~~~~~ 785 (844)
T 1tf5_A 761 AMFEHMIESIEDEVAKFVMKAEIEN 785 (844)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 9999999999999999998521555
No 6
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=1.00 E-value=1 Score=211.14 Aligned_cols=277 Identities=18% Similarity=0.210 Sum_probs=183.3
Q ss_pred CCCHHHHHHHHHHHCCC--EEEECCCCCHHHHHHHHHHHHHHC--------CCCEEEEECCHHHHHHHHHHHHHHHHHCC
Q ss_conf 98226799999972698--678337983699999999999974--------99679996498889998999999764409
Q 002515 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALT--------GEGVHVVTVNDYLAQRDAEWMERVHRFLG 71 (913)
Q Consensus 2 rp~dvQl~g~l~L~~G~--IaEm~TGEGKTLva~lpa~l~AL~--------G~~V~VvT~NdyLA~RD~e~~~~~y~~LG 71 (913)
.|+++|..+...+.+|+ ++.+.||.|||+++.+|++-..+. +..+.|++|+..||.+-++++..+....+
T Consensus 78 ~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~ 157 (434)
T 2db3_A 78 IPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEARKFAFESY 157 (434)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEECSSHHHHHHHHHHHHHHTTTSS
T ss_pred CCCHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHCCCC
T ss_conf 99989999999996699889987899982399999999999844532135896489993489999999999999733478
Q ss_pred CEEEEECCCCCHHHH--HHCCCCCEEEECCCCCHHHHHHHHHCCCHHHHHCCCCCCCEEEEEECCHHHHHCCCCCCEECC
Q ss_conf 949997279999889--732289818987995036698874300312333069998408996040244310689750003
Q 002515 72 LSVGLIQRGMIPEER--RSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLIS 149 (913)
Q Consensus 72 lsv~~i~~~~~~~~r--~~aY~~DI~YgT~~el~fDyLrD~l~~~~~~~v~r~~R~~~~~IVDEvDsiLiDea~tpLiiS 149 (913)
++++++.++.+.... ...-+++|+++|++.+ .|++. .. ....+ .+.++|+||||.|+ |.+
T Consensus 158 ~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l-~~~l~----~~--~~~l~---~~~~lVlDEah~~~-~~g------- 219 (434)
T 2db3_A 158 LKIGIVYGGTSFRHQNECITRGCHVVIATPGRL-LDFVD----RT--FITFE---DTRFVVLDEADRML-DMG------- 219 (434)
T ss_dssp CCCCEECTTSCHHHHHHHHTTCCSEEEECHHHH-HHHHH----TT--SCCCT---TCCEEEEETHHHHT-STT-------
T ss_pred CEEEEEECCCCHHHHHHHHHCCCCEEEECHHHH-HHHHH----HC--CCCCC---CCCEEEECCHHHHH-CCC-------
T ss_conf 679999788887899998506998999874899-99997----28--85633---27768875176663-067-------
Q ss_pred CCCCCCCCCHHHHHHHHHHHCCCCCEEEECCCCEEECCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC
Q ss_conf 78887755269999999981038881886778746604835999998703699778889189999999999986215954
Q 002515 150 GEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQ 229 (913)
Q Consensus 150 g~~~~~~~~y~~~~~~v~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~l~~~~~~~~~~i~~Al~A~~l~~~d~d 229 (913)
+...+..+...+.. ...+++. +++++.+ ..+... +..++. +
T Consensus 220 --------f~~~~~~i~~~~~~-------~~~~q~l-----------------~~SAT~~--~~~~~~--~~~~l~---~ 260 (434)
T 2db3_A 220 --------FSEDMRRIMTHVTM-------RPEHQTL-----------------MFSATFP--EEIQRM--AGEFLK---N 260 (434)
T ss_dssp --------THHHHHHHHHCTTS-------CSSCEEE-----------------EEESCCC--HHHHHH--HHTTCS---S
T ss_pred --------CHHHHHHHHHHCCC-------CCCCEEE-----------------EEECCCC--HHHHHH--HHHHCC---C
T ss_conf --------19999999972578-------9885699-----------------9955689--899999--998646---9
Q ss_pred EEEECCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEEEHHHHHHCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 28878939998678883125753480045899968289446786004555413677222742246788502799999880
Q 002515 230 YIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMF 309 (913)
Q Consensus 230 YiV~~g~I~ivD~~TGRi~~gr~ws~GLHQaieaKEgv~i~~e~~t~a~Is~q~~f~~Y~kl~GmTGTa~te~~Ef~~iY 309 (913)
|+. +.+..
T Consensus 261 ~~~-----i~~~~------------------------------------------------------------------- 268 (434)
T 2db3_A 261 YVF-----VAIGI------------------------------------------------------------------- 268 (434)
T ss_dssp CEE-----EEESS-------------------------------------------------------------------
T ss_pred CEE-----EEECC-------------------------------------------------------------------
T ss_conf 889-----99535-------------------------------------------------------------------
Q ss_pred CCCEEEECCCCCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEECCCCCC
Q ss_conf 99929908999754335997077094489999999999977549949998424221899999999779972785069841
Q 002515 310 QMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKY 389 (913)
Q Consensus 310 ~l~v~~IPt~~p~~R~d~pd~v~~t~~~k~~aii~ei~~~~~~grpVLI~t~si~~se~ls~~L~~~gi~~~vLna~~k~ 389 (913)
.......-....+......|...+.+.+.. .+.++||||.+...++.++..|...|+++..+|++..+
T Consensus 269 ---------~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~---~~~~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~ 336 (434)
T 2db3_A 269 ---------VGGACSDVKQTIYEVNKYAKRSKLIEILSE---QADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQ 336 (434)
T ss_dssp ---------TTCCCTTEEEEEEECCGGGHHHHHHHHHHH---CCTTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCH
T ss_pred ---------CCCCCCCCCEEEEEECCHHHHHHHHHHHHH---CCCCEEEEEECCHHHHHHHHHHHHCCCCEEEEECCCCH
T ss_conf ---------666666533699993717779999999985---79987999947189999999998679987998499999
Q ss_pred HHHHHHHHH-HCCCCCCEEEECCCCCCCCCEE
Q ss_conf 241999998-6399762999728877884200
Q 002515 390 AAREAETVA-QAGRKYAITISTNMAGRGTDII 420 (913)
Q Consensus 390 ~~~Ea~Iia-~AG~~g~VTIATnmAGRGTDIk 420 (913)
.+++..+-. +.| ...|.|||++++||.||.
T Consensus 337 ~~R~~~l~~F~~g-~~~vLvaT~v~~rGlDi~ 367 (434)
T 2db3_A 337 SQREQALRDFKNG-SMKVLIATSVASRGLDIK 367 (434)
T ss_dssp HHHHHHHHHHHTS-SCSEEEECGGGTSSCCCT
T ss_pred HHHHHHHHHHHCC-CCCEEEECHHHHCCCCCC
T ss_conf 9999999999859-993999820645778832
No 7
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=1.00 E-value=1 Score=198.29 Aligned_cols=273 Identities=16% Similarity=0.209 Sum_probs=177.7
Q ss_pred CCCHHHHHHHHHHHCCC--EEEECCCCCHHHHHHHHHHHHHH----CCCCEEEEECCHHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf 98226799999972698--67833798369999999999997----4996799964988899989999997644099499
Q 002515 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNAL----TGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVG 75 (913)
Q Consensus 2 rp~dvQl~g~l~L~~G~--IaEm~TGEGKTLva~lpa~l~AL----~G~~V~VvT~NdyLA~RD~e~~~~~y~~LGlsv~ 75 (913)
.|+++|..+...+.+|+ ++.+.||.|||+++.+|++ ..+ .+..+.|++|+..||.+-++.+..+...+++.++
T Consensus 59 ~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~-~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~ 137 (410)
T 2j0s_A 59 KPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVL-QCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCH 137 (410)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHH-HTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEE
T ss_pred CCCHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHH-HHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 99889999989984799779988899983399999999-99862567833899738489999999999998454773799
Q ss_pred EECCCCCHHH--HHHCCCCCEEEECCCCCHHHHHHHHHCCCHHHHHCCCCCCCEEEEEECCHHHHHCCCCCCEECCCCCC
Q ss_conf 9727999988--97322898189879950366988743003123330699984089960402443106897500037888
Q 002515 76 LIQRGMIPEE--RRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEAS 153 (913)
Q Consensus 76 ~i~~~~~~~~--r~~aY~~DI~YgT~~el~fDyLrD~l~~~~~~~v~r~~R~~~~~IVDEvDsiLiDea~tpLiiSg~~~ 153 (913)
...++..... +...+.++|+++|++.+ ++.++.. ....+ .+.++|+||+|.++ +..
T Consensus 138 ~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l-~~~l~~~------~~~~~---~~~~vViDEah~~~-~~~----------- 195 (410)
T 2j0s_A 138 ACIGGTNVGEDIRKLDYGQHVVAGTPGRV-FDMIRRR------SLRTR---AIKMLVLDEADEML-NKG----------- 195 (410)
T ss_dssp EECTTSCHHHHHHHHHHCCSEEEECHHHH-HHHHHTT------SSCCT---TCCEEEEETHHHHT-STT-----------
T ss_pred EEECCCCHHHHHHHHHCCCCEEECCHHHH-HHHHHHC------CCCHH---HEEEEEECCHHHHH-HHH-----------
T ss_conf 99899787999998516998898598999-9999838------93575---60599975688987-634-----------
Q ss_pred CCCCCHHHHHHHHHHHCCCCCEEEECCCCEEECCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 77552699999999810388818867787466048359999987036997788891899999999999862159542887
Q 002515 154 KDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVR 233 (913)
Q Consensus 154 ~~~~~y~~~~~~v~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~l~~~~~~~~~~i~~Al~A~~l~~~d~dYiV~ 233 (913)
....+..+...+.. ..
T Consensus 196 ----~~~~~~~i~~~~~~---------~~--------------------------------------------------- 211 (410)
T 2j0s_A 196 ----FKEQIYDVYRYLPP---------AT--------------------------------------------------- 211 (410)
T ss_dssp ----THHHHHHHHTTSCT---------TC---------------------------------------------------
T ss_pred ----HHHHHHHHHHHCCC---------CC---------------------------------------------------
T ss_conf ----59999999984864---------76---------------------------------------------------
Q ss_pred CCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEEEHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCE
Q ss_conf 89399986788831257534800458999682894467860045554136772227422467885027999998809992
Q 002515 234 NGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPV 313 (913)
Q Consensus 234 ~g~I~ivD~~TGRi~~gr~ws~GLHQaieaKEgv~i~~e~~t~a~Is~q~~f~~Y~kl~GmTGTa~te~~Ef~~iY~l~v 313 (913)
++.+||+|...+..++...|-.+.
T Consensus 212 --------------------------------------------------------~~i~~SAT~~~~~~~~~~~~~~~~ 235 (410)
T 2j0s_A 212 --------------------------------------------------------QVVLISATLPHEILEMTNKFMTDP 235 (410)
T ss_dssp --------------------------------------------------------EEEEEESCCCHHHHTTGGGTCSSC
T ss_pred --------------------------------------------------------EEEEEECCCCHHHHHHHHHHCCCC
T ss_conf --------------------------------------------------------699997579999999999875898
Q ss_pred EEECCCCCCCCCCC--CCEEE-ECHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEECCCCCCH
Q ss_conf 99089997543359--97077-0944899999999999775499499984242218999999997799727850698412
Q 002515 314 IEVPTNLPNIRVDL--PIQSF-ATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYA 390 (913)
Q Consensus 314 ~~IPt~~p~~R~d~--pd~v~-~t~~~k~~aii~ei~~~~~~grpVLI~t~si~~se~ls~~L~~~gi~~~vLna~~k~~ 390 (913)
..+........... ...+. .....+...+.+.+.. ..+.++||||.+++.++.+++.|...|+++..+|++....
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~--~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~ 313 (410)
T 2j0s_A 236 IRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDT--LTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQK 313 (410)
T ss_dssp EEECCCGGGCSCTTEEEEEEEESSTTHHHHHHHHHHHH--HTSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHH
T ss_pred EEEEECCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHH--CCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCHH
T ss_conf 89995686556788559999938277699999999973--5778479998578789999999986799469822789988
Q ss_pred HHHHHHHH-HCCCCCCEEEECCCCCCCCCEE
Q ss_conf 41999998-6399762999728877884200
Q 002515 391 AREAETVA-QAGRKYAITISTNMAGRGTDII 420 (913)
Q Consensus 391 ~~Ea~Iia-~AG~~g~VTIATnmAGRGTDIk 420 (913)
+++..+-. +.| ...|.|||++++||.||.
T Consensus 314 ~r~~~~~~f~~g-~~~vlv~T~~~~~Gidi~ 343 (410)
T 2j0s_A 314 ERESIMKEFRSG-ASRVLISTDVWARGLDVP 343 (410)
T ss_dssp HHHHHHHHHHHT-SSCEEEECGGGSSSCCCT
T ss_pred HHHHHHHHHHCC-CCCEEEECCHHHCCCCCC
T ss_conf 999999998779-998999897654748844
No 8
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=1.00 E-value=1 Score=197.54 Aligned_cols=279 Identities=16% Similarity=0.128 Sum_probs=180.1
Q ss_pred CCCHHHHHHHHHHHCCC--EEEECCCCCHHHHHHHHHHHHHHC---------------------CCCEEEEECCHHHHHH
Q ss_conf 98226799999972698--678337983699999999999974---------------------9967999649888999
Q 002515 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALT---------------------GEGVHVVTVNDYLAQR 58 (913)
Q Consensus 2 rp~dvQl~g~l~L~~G~--IaEm~TGEGKTLva~lpa~l~AL~---------------------G~~V~VvT~NdyLA~R 58 (913)
.|+++|..+...+.+|+ ++.+.||.|||+++.+|++...+. +..+.|++|+..||.+
T Consensus 37 ~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q 116 (417)
T 2i4i_A 37 RPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQ 116 (417)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCBTTBSCSBCCSEEEECSSHHHHHH
T ss_pred CCCHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCCCCCEEEECCCHHHHHH
T ss_conf 99889999999872699889990798779899999999999744641000001112334444579648998892999999
Q ss_pred HHHHHHHHHHHCCCEEEEECCCCCHHHH--HHCCCCCEEEECCCCCHHHHHHHHHCCCHHHHHCCCCCCCEEEEEECCHH
Q ss_conf 8999999764409949997279999889--73228981898799503669887430031233306999840899604024
Q 002515 59 DAEWMERVHRFLGLSVGLIQRGMIPEER--RSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDS 136 (913)
Q Consensus 59 D~e~~~~~y~~LGlsv~~i~~~~~~~~r--~~aY~~DI~YgT~~el~fDyLrD~l~~~~~~~v~r~~R~~~~~IVDEvDs 136 (913)
-++.+..+....+++++.+.++.+.... ...-.++|+++|++.|. +.+ ... ..... .+.++|+||+|.
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~-~~l----~~~--~~~~~---~~~~iViDEah~ 186 (417)
T 2i4i_A 117 IYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLV-DMM----ERG--KIGLD---FCKYLVLDEADR 186 (417)
T ss_dssp HHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHH-HHH----HTT--SBCCT---TCCEEEESSHHH
T ss_pred HHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHCCCCEEEECHHHHH-HHH----HCC--CCCHH---HCCEEEEECHHH
T ss_conf 99999998275880499998899879999986079999998969999-999----749--93763---595999978367
Q ss_pred HHHCCCCCCEECCCCCCCCCCCHHHHHHHHHHHCCCCCEEEECCCCEEECCHHHHHHHHHHHCCCCCCCCCCCHHHHHHH
Q ss_conf 43106897500037888775526999999998103888188677874660483599999870369977888918999999
Q 002515 137 VLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMN 216 (913)
Q Consensus 137 iLiDea~tpLiiSg~~~~~~~~y~~~~~~v~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~l~~~~~~~~~~i~~ 216 (913)
++-.. +...+..+...... . ....
T Consensus 187 ~~~~~----------------~~~~~~~i~~~~~~----~-~~~~----------------------------------- 210 (417)
T 2i4i_A 187 MLDMG----------------FEPQIRRIVEQDTM----P-PKGV----------------------------------- 210 (417)
T ss_dssp HHHTT----------------CHHHHHHHHTSSSC----C-CBTT-----------------------------------
T ss_pred HHCCC----------------CHHHHHHHHHHCCC----C-CCCC-----------------------------------
T ss_conf 53658----------------69999999973548----9-7677-----------------------------------
Q ss_pred HHHHHHHHCCCCCEEEECCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEEEHHHHHHCCCCCCCCC
Q ss_conf 99999862159542887893999867888312575348004589996828944678600455541367722274224678
Q 002515 217 ALKAKEFYRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTG 296 (913)
Q Consensus 217 Al~A~~l~~~d~dYiV~~g~I~ivD~~TGRi~~gr~ws~GLHQaieaKEgv~i~~e~~t~a~Is~q~~f~~Y~kl~GmTG 296 (913)
.++.+||+
T Consensus 211 ------------------------------------------------------------------------~~~i~~SA 218 (417)
T 2i4i_A 211 ------------------------------------------------------------------------RHTMMFSA 218 (417)
T ss_dssp ------------------------------------------------------------------------BEEEEEES
T ss_pred ------------------------------------------------------------------------CEEEEEEE
T ss_conf ------------------------------------------------------------------------48999998
Q ss_pred CCCCHHHHHHHHH-CCCE-EEECCCCCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHH
Q ss_conf 8502799999880-9992-9908999754335997077094489999999999977549949998424221899999999
Q 002515 297 TAKTEEKEFLKMF-QMPV-IEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLK 374 (913)
Q Consensus 297 Ta~te~~Ef~~iY-~l~v-~~IPt~~p~~R~d~pd~v~~t~~~k~~aii~ei~~~~~~grpVLI~t~si~~se~ls~~L~ 374 (913)
|......++...| +-.+ +.+.........-....++.....+...+.+.+. .+..+.++||||.++..++.++..|.
T Consensus 219 T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~-~~~~~~~~lVf~~~~~~~~~l~~~L~ 297 (417)
T 2i4i_A 219 TFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDKRSFLLDLLN-ATGKDSLTLVFVETKKGADSLEDFLY 297 (417)
T ss_dssp CCCHHHHHHHHHHCSSCEEEEEC----CCSSEEEEEEECCGGGHHHHHHHHHH-TCCTTCEEEEECSSHHHHHHHHHHHH
T ss_pred ECCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEEEEECCHHHHHHHHHHHH-HCCCCCEEEEEECCHHHHHHHHHHHH
T ss_conf 57999999999975897899807877775574278999260768999999998-55899719999798899999999999
Q ss_pred HCCCCEEEECCCCCCHHHHHHHHH-HCCCCCCEEEECCCCCCCCCEE
Q ss_conf 779972785069841241999998-6399762999728877884200
Q 002515 375 QQGIPHNVLNARPKYAAREAETVA-QAGRKYAITISTNMAGRGTDII 420 (913)
Q Consensus 375 ~~gi~~~vLna~~k~~~~Ea~Iia-~AG~~g~VTIATnmAGRGTDIk 420 (913)
..|+++..+|++....+++..+-. +.| ...|.|||++++||.||.
T Consensus 298 ~~~~~~~~~h~~~~~~~r~~~~~~f~~g-~~~vlvaT~~~~~Gidip 343 (417)
T 2i4i_A 298 HEGYACTSIHGDRSQRDREEALHQFRSG-KSPILVATAVAARGLDIS 343 (417)
T ss_dssp HTTCCEEEECTTSCHHHHHHHHHHHHHT-SSCEEEECHHHHTTSCCC
T ss_pred HCCCCEEEECCCCCHHHHHHHHHHHHCC-CCCEEEECCHHHCCCCCC
T ss_conf 7799746710899989999999999769-997999897443478734
No 9
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=1.00 E-value=1 Score=195.37 Aligned_cols=313 Identities=20% Similarity=0.207 Sum_probs=215.2
Q ss_pred CCCHHHHHHHHHHHCCC--EEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCEEEEECC
Q ss_conf 98226799999972698--6783379836999999999999749967999649888999899999976440994999727
Q 002515 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQR 79 (913)
Q Consensus 2 rp~dvQl~g~l~L~~G~--IaEm~TGEGKTLva~lpa~l~AL~G~~V~VvT~NdyLA~RD~e~~~~~y~~LGlsv~~i~~ 79 (913)
.|++.|..+...+..|+ ++.|.||.|||+++.+|++. .+..+.||+|+..|+.+..+.+..+ |++++.+.+
T Consensus 44 ~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~---~~g~~lVisP~~~L~~q~~~~l~~~----gi~~~~l~~ 116 (591)
T 2v1x_A 44 KFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALC---SDGFTLVICPLISLMEDQLMVLKQL----GISATMLNA 116 (591)
T ss_dssp SCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHT---SSSEEEEECSCHHHHHHHHHHHHHH----TCCEEECCS
T ss_pred CCCHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHH---CCCCEEEEECHHHHHHHHHHHHHHC----CCCEEEEEC
T ss_conf 999999999999984999899979987099999999997---6992999968799999999999966----995899968
Q ss_pred CCCHHHHHH--------CCCCCEEEECCCCCHH-HHHHHHHCCCHHHHHCCCCCCCEEEEEECCHHHHHCCCCCCEECCC
Q ss_conf 999988973--------2289818987995036-6988743003123330699984089960402443106897500037
Q 002515 80 GMIPEERRS--------NYRCDITYTNNSELGF-DYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISG 150 (913)
Q Consensus 80 ~~~~~~r~~--------aY~~DI~YgT~~el~f-DyLrD~l~~~~~~~v~r~~R~~~~~IVDEvDsiLiDea~tpLiiSg 150 (913)
+.+..++.. .-.++|+|+|+..+.. ..+.+.+.. ..... .+.++||||||.++-.. .
T Consensus 117 ~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~---~~~~~---~i~~iViDEAH~is~~g-~------- 182 (591)
T 2v1x_A 117 SSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEK---AYEAR---RFTRIAVDEVHCCSQWG-H------- 182 (591)
T ss_dssp SCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHH---HHHTT---CEEEEEEETGGGGSTTC-T-------
T ss_pred CCCHHHHHHHHHHHHCCCCCCCEEEECHHHHHCCHHHHHHHHH---HHHCC---CCCEEEEECCCCCCCCC-C-------
T ss_conf 9999999999998651268887899884675441999999984---44206---87689998842244246-5-------
Q ss_pred CCCCCCCCHHHHHHHHHHHCCCCCEEEECCCCEEECCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCE
Q ss_conf 88877552699999999810388818867787466048359999987036997788891899999999999862159542
Q 002515 151 EASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQY 230 (913)
Q Consensus 151 ~~~~~~~~y~~~~~~v~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~l~~~~~~~~~~i~~Al~A~~l~~~d~dY 230 (913)
+|..+ |. .+. .++ ..+.
T Consensus 183 -----------------------dfr~~-------------------------~~---~l~-----~l~--~~~~----- 199 (591)
T 2v1x_A 183 -----------------------DFRPD-------------------------YK---ALG-----ILK--RQFP----- 199 (591)
T ss_dssp -----------------------TCCGG-------------------------GG---GGG-----HHH--HHCT-----
T ss_pred -----------------------CCHHH-------------------------HH---HHH-----HHH--HHCC-----
T ss_conf -----------------------41899-------------------------99---999-----999--8589-----
Q ss_pred EEECCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEEEHHHHHHCCCCCCCCCCCCCHH-HHHHHHH
Q ss_conf 887893999867888312575348004589996828944678600455541367722274224678850279-9999880
Q 002515 231 IVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEE-KEFLKMF 309 (913)
Q Consensus 231 iV~~g~I~ivD~~TGRi~~gr~ws~GLHQaieaKEgv~i~~e~~t~a~Is~q~~f~~Y~kl~GmTGTa~te~-~Ef~~iY 309 (913)
-..+.+||+|+.... ..+.+..
T Consensus 200 ---------------------------------------------------------~~~ii~lSAT~~~~v~~~i~~~l 222 (591)
T 2v1x_A 200 ---------------------------------------------------------NASLIGLTATATNHVLTDAQKIL 222 (591)
T ss_dssp ---------------------------------------------------------TSEEEEEESSCCHHHHHHHHHHT
T ss_pred ---------------------------------------------------------CCCEEEEECCCCHHHHHHHHHHH
T ss_conf ---------------------------------------------------------98689994579889999999983
Q ss_pred CCCE-E-E-ECCCCCCCCCCCCCEEEE---CHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 9992-9-9-089997543359970770---94489999999999977549949998424221899999999779972785
Q 002515 310 QMPV-I-E-VPTNLPNIRVDLPIQSFA---TARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVL 383 (913)
Q Consensus 310 ~l~v-~-~-IPt~~p~~R~d~pd~v~~---t~~~k~~aii~ei~~~~~~grpVLI~t~si~~se~ls~~L~~~gi~~~vL 383 (913)
++.. . . .+.++|..+. .+.. ....+...+++.+... ..+.++||||.|...++.++..|...|+....+
T Consensus 223 ~~~~~~~~~~~~~r~nl~~----~v~~~~~~~~~~~~~l~~~l~~~-~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~ 297 (591)
T 2v1x_A 223 CIEKCFTFTASFNRPNLYY----EVRQKPSNTEDFIEDIVKLINGR-YKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAY 297 (591)
T ss_dssp TCCSCEEEECCCCCTTEEE----EEEECCSSHHHHHHHHHHHHTTT-TTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCCCEEEECCCCCCCCEE----EEEECCCCHHHHHHHHHHHHHHH-CCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEE
T ss_conf 8998689846777766579----99967875799999999999974-458876999676899999999999779978984
Q ss_pred CCCCCCHHHHHHHHH-HCCCCCCEEEECCCCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHH
Q ss_conf 069841241999998-6399762999728877884200599714778999999998887542012234567899400245
Q 002515 384 NARPKYAAREAETVA-QAGRKYAITISTNMAGRGTDIILGGNPKMLAKKIIEDRLLLLLTREALNVEVDDKTSSPKVLSE 462 (913)
Q Consensus 384 na~~k~~~~Ea~Iia-~AG~~g~VTIATnmAGRGTDIkLgg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (913)
|++....+++..+-. +.| ...|.|||+++|+|.|+.
T Consensus 298 h~~l~~~~R~~~~~~F~~g-~~~VlVAT~a~~~GID~p------------------------------------------ 334 (591)
T 2v1x_A 298 HANLEPEDKTTVHRKWSAN-EIQVVVATVAFGMGIDKP------------------------------------------ 334 (591)
T ss_dssp CTTSCHHHHHHHHHHHHTT-SSSEEEECTTSCTTCCCS------------------------------------------
T ss_pred CCCCCHHHHHHHHHHHHCC-CCEEEEEECHHHCCCCCC------------------------------------------
T ss_conf 6987999999999999769-983999845330687743------------------------------------------
Q ss_pred HHHCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
Q ss_conf 42033047999999998755134567740233221000144666544438999988732025799971468888877543
Q 002515 463 IKLGSSSLALLAKAALLAKYVGKAEGKSWTYQEAKSFFSESVEMSQSMNLKELQKLIDKQSAMYPLGPTVALTYLSVLKD 542 (913)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 (913)
T Consensus 335 -------------------------------------------------------------------------------- 334 (591)
T 2v1x_A 335 -------------------------------------------------------------------------------- 334 (591)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred HHHCCCCCCHHHHHCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCCEEEEEECCC
Q ss_conf 32002334213451386289931589822367653012245899993369986460
Q 002515 543 CEVHCSNEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQD 598 (913)
Q Consensus 543 ~~~~~~~~~~~V~~~GGL~VIgTer~esrRid~QlrGRagRQGdpGss~f~lSleD 598 (913)
.|. +||-...+.|..--.|-.|||||-|.||....|.+.+|
T Consensus 335 ----------~V~-----~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l~~~~D 375 (591)
T 2v1x_A 335 ----------DVR-----FVIHHSMSKSMENYYQESGRAGRDDMKADCILYYGFGD 375 (591)
T ss_dssp ----------CEE-----EEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHH
T ss_pred ----------CCC-----EEEEECCCCCHHHHHHHHCCCCCCCCCCEEEEEECHHH
T ss_conf ----------665-----89996999999999898540776999865999977688
No 10
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=1.00 E-value=1 Score=194.17 Aligned_cols=284 Identities=15% Similarity=0.166 Sum_probs=177.9
Q ss_pred CCCHHHHHHHHHHH--CCC--EEEECCCCCHHHHHHHHHHHHHHCCC-------CEEEEECCHHHHHHHHHHHHHHHHH-
Q ss_conf 98226799999972--698--67833798369999999999997499-------6799964988899989999997644-
Q 002515 2 RHFDVQIIGGAVLH--DGS--IAEMKTGEGKTLVSTLAAYLNALTGE-------GVHVVTVNDYLAQRDAEWMERVHRF- 69 (913)
Q Consensus 2 rp~dvQl~g~l~L~--~G~--IaEm~TGEGKTLva~lpa~l~AL~G~-------~V~VvT~NdyLA~RD~e~~~~~y~~- 69 (913)
.|+++|..+...+. +|+ |+.+.||.|||+++.+|+....+.++ .+.|++|+..||.+-++.+..++..
T Consensus 94 ~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~La~Q~~~~~~~~~~~~ 173 (563)
T 3i5x_A 94 GLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMN 173 (563)
T ss_dssp SCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHC
T ss_conf 99999999999996679972999878999742999999999987423466677049998284999999999999997423
Q ss_pred ---CCCEEEEECCCCCHHHHH---HCCCCCEEEECCCCCHHHHHHHHHCCCHHHHHCCCCCCCEEEEEECCHHHHHCCCC
Q ss_conf ---099499972799998897---32289818987995036698874300312333069998408996040244310689
Q 002515 70 ---LGLSVGLIQRGMIPEERR---SNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGR 143 (913)
Q Consensus 70 ---LGlsv~~i~~~~~~~~r~---~aY~~DI~YgT~~el~fDyLrD~l~~~~~~~v~r~~R~~~~~IVDEvDsiLiDea~ 143 (913)
-++.+....++.+..... ....++|+++|++.+ ++.|... .....+ .+.++||||||.++ |.++
T Consensus 174 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l-~~~l~~~-----~~~~~~---~~~~lViDEah~l~-~~~f 243 (563)
T 3i5x_A 174 YGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRL-IDVLEKY-----SNKFFR---FVDYKVLDEADRLL-EIGF 243 (563)
T ss_dssp GGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHH-HHHHHHH-----HHHHCT---TCCEEEEETHHHHT-STTT
T ss_pred CCCCCEEEEEEECCCCHHHHHHHHHCCCCCEEEECCHHH-HHHHHHC-----CCCCCC---CCEEEEEECHHHHH-CCCH
T ss_conf 566760499998990779999997468999899892999-9999834-----411125---51099983778775-0550
Q ss_pred CCEECCCCCCCCCCCHHHHHHHHHHHCCCCCEEEECCCCEEECCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 75000378887755269999999981038881886778746604835999998703699778889189999999999986
Q 002515 144 NPLLISGEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEF 223 (913)
Q Consensus 144 tpLiiSg~~~~~~~~y~~~~~~v~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~l~~~~~~~~~~i~~Al~A~~l 223 (913)
.+.+..+...+...... ....
T Consensus 244 ---------------~~~~~~i~~~l~~~~~~--~~~~------------------------------------------ 264 (563)
T 3i5x_A 244 ---------------RDDLETISGILNEKNSK--SADN------------------------------------------ 264 (563)
T ss_dssp ---------------HHHHHHHHHHHHHHCSS--CTTC------------------------------------------
T ss_pred ---------------HHHHHHHHHHHHHCCCC--CCCC------------------------------------------
T ss_conf ---------------99999999861110356--7667------------------------------------------
Q ss_pred HCCCCCEEEECCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEEEHHHHHHCCCCCCCCCCCCCHHH
Q ss_conf 21595428878939998678883125753480045899968289446786004555413677222742246788502799
Q 002515 224 YRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEK 303 (913)
Q Consensus 224 ~~~d~dYiV~~g~I~ivD~~TGRi~~gr~ws~GLHQaieaKEgv~i~~e~~t~a~Is~q~~f~~Y~kl~GmTGTa~te~~ 303 (913)
.++.+||+|+.....
T Consensus 265 -----------------------------------------------------------------~~~l~~SAT~~~~v~ 279 (563)
T 3i5x_A 265 -----------------------------------------------------------------IKTLLFSATLDDKVQ 279 (563)
T ss_dssp -----------------------------------------------------------------CEEEEEESSCCTHHH
T ss_pred -----------------------------------------------------------------CEEEEEECCCCHHHH
T ss_conf -----------------------------------------------------------------559999816887899
Q ss_pred HHHHHH-CCC-EEEE---CCCCCCCCCCCCC--EEEECHHHHHHHHHHHHHHH---HHCCCCEEEEECCHHHHHHHHHHH
Q ss_conf 999880-999-2990---8999754335997--07709448999999999997---754994999842422189999999
Q 002515 304 EFLKMF-QMP-VIEV---PTNLPNIRVDLPI--QSFATARGKWEYARQEVESM---FRLGRPVLVGSTSVENSEYLSDLL 373 (913)
Q Consensus 304 Ef~~iY-~l~-v~~I---Pt~~p~~R~d~pd--~v~~t~~~k~~aii~ei~~~---~~~grpVLI~t~si~~se~ls~~L 373 (913)
++...+ +.. .+.+ +...+........ ........+....+..+... ...+.++||||.|...++.++..|
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L 359 (563)
T 3i5x_A 280 KLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSIL 359 (563)
T ss_dssp HHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHH
T ss_pred HHHHHHCCCCCEEEEECCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHH
T ss_conf 99998638876178741577775521037548998722676699999999999861378872899948179999999999
Q ss_pred HHC---CCCEEEECCCCCCHHHHHHHHH-HCCCCCCEEEECCCCCCCCCEE
Q ss_conf 977---9972785069841241999998-6399762999728877884200
Q 002515 374 KQQ---GIPHNVLNARPKYAAREAETVA-QAGRKYAITISTNMAGRGTDII 420 (913)
Q Consensus 374 ~~~---gi~~~vLna~~k~~~~Ea~Iia-~AG~~g~VTIATnmAGRGTDIk 420 (913)
... +++...+|++....+++..+-. +.| ...|.|||++++||.||.
T Consensus 360 ~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g-~~~vLvaT~~~~~GiDip 409 (563)
T 3i5x_A 360 KNEFKKDLPILEFHGKITQNKRTSLVKRFKKD-ESGILVCTDVGARGMDFP 409 (563)
T ss_dssp HHHHTTTSCEEEESTTSCHHHHHHHHHHHHHC-SSEEEEECGGGTSSCCCT
T ss_pred HHHCCCCCEEEEECCCCCHHHHHHHHHHHHCC-CCCEEEECCHHHCCCCCC
T ss_conf 87424796089825889999999999998668-998899836664689842
Done!