Query 002516
Match_columns 913
No_of_seqs 367 out of 852
Neff 3.9
Searched_HMMs 29240
Date Tue Mar 26 16:49:18 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002516.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1234-1238//hhsearch_pdb/002516hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wid_A DNA-binding protein RAV 1.0 1 1 210.2 15.0 114 106-219 6-121 (130)
2 4i1k_A B3 domain-containing tr 1.0 1 1 139.7 12.6 98 110-217 45-144 (146)
3 1yel_A AT1G16640; CESG, protei 1.0 1 1 111.9 10.8 95 111-216 8-102 (104)
4 1na6_A Ecorii, restriction end 1.0 1 1 40.2 8.1 93 110-203 17-123 (404)
5 2kkc_A Sequestosome-1; P62, PB 1.0 1 1 32.5 4.2 62 796-863 2-79 (102)
6 2ktr_A Sequestosome-1; autopha 1.0 1 1 30.4 4.1 61 797-863 18-94 (117)
7 1wmh_B Partitioning defective- 1.0 1 1 29.0 7.0 68 800-874 7-76 (86)
8 1oey_J P40-PHOX, neutrophil cy 1.0 1 1 28.7 6.2 57 809-891 18-78 (107)
9 1vd2_A Protein kinase C, IOTA 1.0 1 1 27.6 7.0 54 799-859 6-59 (89)
10 1q1o_A Cell division control p 1.0 1 1 21.5 7.1 75 797-873 3-85 (98)
No 1
>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=1.00 E-value=1 Score=210.19 Aligned_cols=114 Identities=32% Similarity=0.527 Sum_probs=104.8
Q ss_pred CCCCCCEEEEEEECCCCCCCCCCEEEEHHHHHHCCCCCCCCCCCCCEEEEEEECCCCEEEEEEEEECCCCCEEECCCHHH
Q ss_conf 99997415999701245998893256030263209999999999950899996699838989999089972177243233
Q 002516 106 PSKHPSEFFCKTLTASDTSTHGGFSVPRRAAEKLFPPLDYTMQPPTQELVVRDLHDNTWTFRHIYRGQPKRHLLTTGWSL 185 (913)
Q Consensus 106 ~~~~~~~~F~K~LT~SDvs~~GrfsVPkr~Ae~~FPpLd~~~~~p~q~L~v~Dl~G~~W~FR~~yrg~pkRhlLTtGWs~ 185 (913)
..+...++|+|+||+|||+++++|+||+++|+.|||+++..+..+.++|.++|.+|++|+|||+||+++++|+|++||+.
T Consensus 6 ~~~~~~~~F~K~Lt~SDv~~~~rL~iPk~~a~~~lP~~~~~~~~~~~~l~l~D~~Gk~W~fr~~~~~~~~~~~Lt~GW~~ 85 (130)
T 1wid_A 6 SGRSAEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYWNSSQSYVLTKGWSR 85 (130)
T ss_dssp --CCCEEEEEEECCTTTTSSSCCEEECHHHHTTTSCCCSSCCSSCCEEEEEEETTTEEEEEEEEEETTTTEEEEESSHHH
T ss_pred CCCCCCCEEEEEEEHHHCCCCCEEEECHHHHHHHCCCCCCCCCCCCEEEEEEECCCCEEEEEEEEECCCCCEEECCCHHH
T ss_conf 89998624999985577189777996789999668865444578838999995899999999999789996388377488
Q ss_pred HHHCCCCCCCCEEEEEECC--CCCEEEEEEECCCCC
Q ss_conf 4301487569879999846--984899899447678
Q 002516 186 FVGSKRLRAGDSVLFIRDE--KSQLMVGVRRANRQQ 219 (913)
Q Consensus 186 FVk~KkL~aGDsVvF~R~e--~G~L~VGIRRa~r~~ 219 (913)
||++|+|++||.|+|++.+ ++.|+|++||+.++.
T Consensus 86 FV~~~~L~~GD~~~F~~~~~~~~~l~I~~rr~~~~~ 121 (130)
T 1wid_A 86 FVKEKNLRAGDVVSFSRSNGQDQQLYIGWKSRSGSD 121 (130)
T ss_dssp HHHHTTCCTTCEEEEEECCSSSCCEEEEEECCCSCS
T ss_pred HHHHCCCCCCCEEEEEEECCCCCEEEEEEEECCCCC
T ss_conf 778719988989999995389968999999899998
No 2
>4i1k_A B3 domain-containing transcription factor VRN1; B3 domain beta-barrel, DNA binding protein; 1.60A {Arabidopsis thaliana}
Probab=1.00 E-value=1 Score=139.72 Aligned_cols=98 Identities=24% Similarity=0.341 Sum_probs=86.3
Q ss_pred CCEEEEEEECCCCCCCCCCEEEEHHHHHHCCCCCCCCCCCCCEEEEEEECCCCEEEEEEEEECCCCCEEECCCHHHHHHC
Q ss_conf 74159997012459988932560302632099999999999508999966998389899990899721772432334301
Q 002516 110 PSEFFCKTLTASDTSTHGGFSVPRRAAEKLFPPLDYTMQPPTQELVVRDLHDNTWTFRHIYRGQPKRHLLTTGWSLFVGS 189 (913)
Q Consensus 110 ~~~~F~K~LT~SDvs~~GrfsVPkr~Ae~~FPpLd~~~~~p~q~L~v~Dl~G~~W~FR~~yrg~pkRhlLTtGWs~FVk~ 189 (913)
..++|.|+||+||+.....|.||+++++.|||..+ ..+.++|. |+.|.|+|+|++. ++.|++||..||++
T Consensus 45 ~~P~Fvk~l~~S~v~~~~~L~IP~~Fa~~~lp~~~-------~~i~L~~~-gk~W~v~~~~~~~--~~~ls~GW~~Fv~d 114 (146)
T 4i1k_A 45 TNPFFRVVLRPSYLYRGCIMYLPSGFAEKYLSGIS-------GFIKVQLA-EKQWPVRCLYKAG--RAKFSQGWYEFTLE 114 (146)
T ss_dssp SSCEEEEECCGGGSSTTCCEECCHHHHHHHCTTCC-------SEEEEEET-TEEEEEEEEEETT--EEEECTTHHHHHHH
T ss_pred CCCEEEEEECCHHCCCCCEEEECHHHHHHHCCCCC-------EEEEEEEC-CCEEEEEEEEECC--CEEECCCHHHHHHH
T ss_conf 99989999785661898679909999997488888-------37999979-9478989999589--07877763898887
Q ss_pred CCCCCCCEEEEEECCCC--CEEEEEEECCC
Q ss_conf 48756987999984698--48998994476
Q 002516 190 KRLRAGDSVLFIRDEKS--QLMVGVRRANR 217 (913)
Q Consensus 190 KkL~aGDsVvF~R~e~G--~L~VGIRRa~r 217 (913)
++|++||.|+|....+. .+.|.|.|++.
T Consensus 115 n~L~~GD~cvFeli~~~~~~f~V~IfR~~e 144 (146)
T 4i1k_A 115 NNLGEGDVCVFELLRTRDFVLKVTAFRVNE 144 (146)
T ss_dssp TTCCTTCEEEEEECSSSSCEEEEEEECCC-
T ss_pred CCCCCCCEEEEEEECCCCEEEEEEEEECCC
T ss_conf 599989899999936986599999994457
No 3
>1yel_A AT1G16640; CESG, protein structure initiative, structural genomics, center for eukaryotic structural genomics, unknown function; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=1.00 E-value=1 Score=111.95 Aligned_cols=95 Identities=26% Similarity=0.439 Sum_probs=82.2
Q ss_pred CEEEEEEECCCCCCCCCCEEEEHHHHHHCCCCCCCCCCCCCEEEEEEECCCCEEEEEEEEECCCCCEEECCCHHHHHHCC
Q ss_conf 41599970124599889325603026320999999999995089999669983898999908997217724323343014
Q 002516 111 SEFFCKTLTASDTSTHGGFSVPRRAAEKLFPPLDYTMQPPTQELVVRDLHDNTWTFRHIYRGQPKRHLLTTGWSLFVGSK 190 (913)
Q Consensus 111 ~~~F~K~LT~SDvs~~GrfsVPkr~Ae~~FPpLd~~~~~p~q~L~v~Dl~G~~W~FR~~yrg~pkRhlLTtGWs~FVk~K 190 (913)
.+.|.|+|+++|.. .++.||+++++.+.+.+. ..+.++|..|++|++++.+++ ++.+|+.||..||+++
T Consensus 8 ~p~F~K~l~~~~~~--~~L~IP~~F~~~~~~~~~-------~~v~L~~~~G~~W~v~~~~~~--~~~~l~~GW~~Fv~~~ 76 (104)
T 1yel_A 8 EVQFMKPFISEKSS--KSLEIPLGFNEYFPAPFP-------ITVDLLDYSGRSWTVRMKKRG--EKVFLTVGWENFVKDN 76 (104)
T ss_dssp CEEEEEECCHHHHT--TCEECCHHHHTTCCCCCC-------SEEEEEETTSCEEEEEEEEET--TEEEECTTHHHHHHHH
T ss_pred CCCEEEEECCCCCC--CEEECCHHHHHHCCCCCC-------CEEEEECCCCCEEEEEEEEEC--CCEEECCCHHHHHHHC
T ss_conf 98789998777755--318889999986486699-------889999799999999999989--9499862949999975
Q ss_pred CCCCCCEEEEEECCCCCEEEEEEECC
Q ss_conf 87569879999846984899899447
Q 002516 191 RLRAGDSVLFIRDEKSQLMVGVRRAN 216 (913)
Q Consensus 191 kL~aGDsVvF~R~e~G~L~VGIRRa~ 216 (913)
+|++||.++|....+..+.|-|.|.+
T Consensus 77 ~L~~GD~lvF~~~~~~~f~V~If~~s 102 (104)
T 1yel_A 77 NLEDGKYLQFIYDRDRTFYVIIYGHN 102 (104)
T ss_dssp TCCTTCEEEEEECSSSEEEEEEECSS
T ss_pred CCCCCCEEEEEECCCCEEEEEEECCC
T ss_conf 99989899999858976999997898
No 4
>1na6_A Ecorii, restriction endonuclease ecorii; site-specific restriction, mutation, replication, hydrolase; 2.10A {Escherichia coli} SCOP: b.142.1.1 c.52.1.22 PDB: 3hqg_A 3hqf_A
Probab=1.00 E-value=1 Score=40.17 Aligned_cols=93 Identities=24% Similarity=0.279 Sum_probs=66.7
Q ss_pred CCEEEEEEECCCCCCCC----CCEEEEHHHHHHCCCCCCCC-CCCCCEEEEEE--ECCCCEEEEEEEEEC------CCCC
Q ss_conf 74159997012459988----93256030263209999999-99995089999--669983898999908------9972
Q 002516 110 PSEFFCKTLTASDTSTH----GGFSVPRRAAEKLFPPLDYT-MQPPTQELVVR--DLHDNTWTFRHIYRG------QPKR 176 (913)
Q Consensus 110 ~~~~F~K~LT~SDvs~~----GrfsVPkr~Ae~~FPpLd~~-~~~p~q~L~v~--Dl~G~~W~FR~~yrg------~pkR 176 (913)
....|+|.|++-|++.. .+|-+|+..+...||.|+.. ...+...+.+. |...-++.++.+|.+ +...
T Consensus 17 ~~~v~~K~LSAnDtgatgshQ~gi~ipk~~l~~lfp~lg~~~e~~~~~~~~~~l~d~d~p~td~~~twYn~R~~~~tRnE 96 (404)
T 1na6_A 17 NYFVYIKRLSANDTGATGGHQVGLYIPSGIVEKLFPSINHTRELNPSVFLTAHVSSHDCPDSEARAIYYNSAHFGKTRNE 96 (404)
T ss_dssp SEEEEEEECCHHHHTCC---CCCCCCCHHHHHHHCGGGCCCSSSSCEEEEEEEESSSCCCCEEEEEEEECGGGTTSCCCE
T ss_pred CCHHEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEEEEECCCCCCCCCCC
T ss_conf 60413577224457887776444578568999863548986556776315778416888427789998326466898874
Q ss_pred EEECCCHH-HHHHCCCCCCCCEEEEEEC
Q ss_conf 17724323-3430148756987999984
Q 002516 177 HLLTTGWS-LFVGSKRLRAGDSVLFIRD 203 (913)
Q Consensus 177 hlLTtGWs-~FVk~KkL~aGDsVvF~R~ 203 (913)
+.||. |. .+.-.....+||..+|.+.
T Consensus 97 yRLt~-~~~~~~~~~~a~~GDLlvia~~ 123 (404)
T 1na6_A 97 KRITR-WGRGSPLQDPENTGALTLLAFK 123 (404)
T ss_dssp EEEEC-CCTTSGGGCGGGTTCEEEEEEE
T ss_pred EEEEE-CCCCCCCCCCCCCCCEEEEEEE
T ss_conf 58840-2789865466888788999872
No 5
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B
Probab=1.00 E-value=1 Score=32.47 Aligned_cols=62 Identities=18% Similarity=0.158 Sum_probs=44.9
Q ss_pred CCCCCEEEEECCC-----CEEEEECCCC-----------CCCHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCEE
Q ss_conf 8974348991247-----5025531799-----------99979999999987424465469999931999992689779
Q 002516 796 PPMRTYTKVQKTG-----SVGRSIDVTN-----------FKNYDELCSAIERMFGLEGLLNDPRGTEWKLVYVDYENDVL 859 (913)
Q Consensus 796 ~~~~~fVKV~m~G-----~igRkIDL~~-----------~~sY~eL~~~L~~MF~~~g~l~d~~~s~~~lvYeD~EGD~l 859 (913)
|..+.-||+|..| .--|+.-+.. -.+|++|+..+.++|..- .+..+.+.|.|.|||..
T Consensus 2 ~~m~~~vKayl~~~~~~~~EiRRF~l~~~~~p~~~~~~~~~s~~~L~~~V~~lFp~l------~~~~f~l~Y~DedGDlI 75 (102)
T 2kkc_A 2 PHMSLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPCERLLSRVAVLFPAL------RPGGFQAHYRAERGDLV 75 (102)
T ss_dssp -CCEEEEEEEEECSSSCEEEEEEEEEESSSCSCSSSCCSCCHHHHHHHHHHHHCTTS------CSSCEEEEEECTTCCEE
T ss_pred CCCEEEEEEEECCCCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCC------CCCCEEEEEECCCCCEE
T ss_conf 974699999981677778726998833677754222446666999999999975445------79838999998999989
Q ss_pred ECCC
Q ss_conf 8267
Q 002516 860 LVGD 863 (913)
Q Consensus 860 LvGD 863 (913)
-..+
T Consensus 76 tiSs 79 (102)
T 2kkc_A 76 AFSS 79 (102)
T ss_dssp EECS
T ss_pred EECC
T ss_conf 7648
No 6
>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}
Probab=1.00 E-value=1 Score=30.43 Aligned_cols=61 Identities=15% Similarity=0.081 Sum_probs=44.1
Q ss_pred CCCCEEEEECCC-----CEEEEECCC-----------CCCCHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCEEE
Q ss_conf 974348991247-----502553179-----------9999799999999874244654699999319999926897798
Q 002516 797 PMRTYTKVQKTG-----SVGRSIDVT-----------NFKNYDELCSAIERMFGLEGLLNDPRGTEWKLVYVDYENDVLL 860 (913)
Q Consensus 797 ~~~~fVKV~m~G-----~igRkIDL~-----------~~~sY~eL~~~L~~MF~~~g~l~d~~~s~~~lvYeD~EGD~lL 860 (913)
.+..-||+|..| .=-|+.-|. .-.+|.+|+..+.++|..- .+..|++.|.|.|||+.-
T Consensus 18 ~~~l~vKayl~~~~~~~~EIRRF~l~~~~~p~~~~~~~~~s~~~L~~kV~~lFp~L------~~~~f~l~YkDEdGDlIt 91 (117)
T 2ktr_A 18 MGSLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPSERLLSRVAVLFPAL------RPGGFQAHYRAERGDLVA 91 (117)
T ss_dssp --CEEEEEEEECSSSCEEEEEEEEECSSSCSCSSSCCSCCHHHHHHHHHHHHCTTS------CSSCEEEEEECTTCCEEE
T ss_pred CCCEEEEEEEECCCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCC------CCCCEEEEEECCCCCEEE
T ss_conf 45289999980677788727998842677743112456777999999999973455------898389999989999897
Q ss_pred CCC
Q ss_conf 267
Q 002516 861 VGD 863 (913)
Q Consensus 861 vGD 863 (913)
...
T Consensus 92 ISs 94 (117)
T 2ktr_A 92 FSS 94 (117)
T ss_dssp ECS
T ss_pred ECC
T ss_conf 638
No 7
>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2
Probab=1.00 E-value=1 Score=29.01 Aligned_cols=68 Identities=15% Similarity=0.239 Sum_probs=50.4
Q ss_pred CEEEEECCCCEEE-EECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCEEECCC-CCHHHCCCCEE
Q ss_conf 3489912475025-531799999799999999874244654699999319999926897798267-74010013224
Q 002516 800 TYTKVQKTGSVGR-SIDVTNFKNYDELCSAIERMFGLEGLLNDPRGTEWKLVYVDYENDVLLVGD-DPWEEFVGCVR 874 (913)
Q Consensus 800 ~fVKV~m~G~igR-kIDL~~~~sY~eL~~~L~~MF~~~g~l~d~~~s~~~lvYeD~EGD~lLvGD-vPWe~Fv~svk 874 (913)
.-||.+-++.+-| ++|-..-.+|++|..-++++|.+. ...+++.|.|.+||++-.-+ +-..+-+.+++
T Consensus 7 l~vKskf~aE~RRFs~d~~~~~~fe~f~~lv~~lh~L~-------~~~f~i~Y~D~dGDLlpInnDdnl~~Al~~a~ 76 (86)
T 1wmh_B 7 VEVKSKFDAEFRRFALPRASVSGFQEFSRLLRAVHQIP-------GLDVLLGYTDAHGDLLPLTNDDSLHRALASGP 76 (86)
T ss_dssp EEEEEEETTEEEEEEEEGGGCCCHHHHHHHHHHHTTCT-------TCCCEEEEECTTSCEEECCSHHHHHHHTTSSS
T ss_pred EEEEEECCCEEEEEECCCCCCCCHHHHHHHHHHHCCCC-------CCCEEEEEECCCCCEEEECCHHHHHHHHHHCC
T ss_conf 99986338804676726887878899999999975789-------98789999889999761458899999997288
No 8
>1oey_J P40-PHOX, neutrophil cytosol factor 4; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=1.00 E-value=1 Score=28.69 Aligned_cols=57 Identities=30% Similarity=0.422 Sum_probs=47.6
Q ss_pred CEEEEE----CCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCEEECCCCCHHHCCCCEEEEEEECHHHH
Q ss_conf 502553----1799999799999999874244654699999319999926897798267740100132248898283666
Q 002516 809 SVGRSI----DVTNFKNYDELCSAIERMFGLEGLLNDPRGTEWKLVYVDYENDVLLVGDDPWEEFVGCVRCIRILSPQEV 884 (913)
Q Consensus 809 ~igRkI----DL~~~~sY~eL~~~L~~MF~~~g~l~d~~~s~~~lvYeD~EGD~lLvGDvPWe~Fv~svkrirIl~~se~ 884 (913)
.-.|.| ||+.--.|.+|..-..+-|..+ +-.|-|.|.|||+ ||||..+++
T Consensus 18 ~~irdI~veedl~~~P~ykdLl~lmr~~F~~~---------DIaLNYrD~eGDL-----------------IrilddeDv 71 (107)
T 1oey_J 18 STIKDIAVEEDLSSTPLLKDLLELTRREFQRE---------DIALNYRDAEGDL-----------------VRLLSDEDV 71 (107)
T ss_dssp EEEEEEEECSCTTCCCCHHHHHHHHHHHHCCS---------SEEEEEECTTSCE-----------------EECCSHHHH
T ss_pred CEEEEEEECCCCCCCCCHHHHHHHHHHHHCCC---------CEEEEEECCCCCE-----------------EEECCHHHH
T ss_conf 34203887156466977899999999873410---------0466303688998-----------------998165778
Q ss_pred HHHHHHH
Q ss_conf 3210755
Q 002516 885 EQMSEEG 891 (913)
Q Consensus 885 ~~m~~~~ 891 (913)
.-|.+++
T Consensus 72 ~lmi~~s 78 (107)
T 1oey_J 72 ALMVRQA 78 (107)
T ss_dssp HHHHHHC
T ss_pred HHHHHHH
T ss_conf 9999996
No 9
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=1.00 E-value=1 Score=27.62 Aligned_cols=54 Identities=15% Similarity=0.275 Sum_probs=41.3
Q ss_pred CCEEEEECCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCEE
Q ss_conf 4348991247502553179999979999999987424465469999931999992689779
Q 002516 799 RTYTKVQKTGSVGRSIDVTNFKNYDELCSAIERMFGLEGLLNDPRGTEWKLVYVDYENDVL 859 (913)
Q Consensus 799 ~~fVKV~m~G~igRkIDL~~~~sY~eL~~~L~~MF~~~g~l~d~~~s~~~lvYeD~EGD~l 859 (913)
..-||++-.|- .|.+.+..--+|++|...+..+|.+. ....+++.|.|.|||+.
T Consensus 6 ~vkvK~~~~gd-i~~~~v~~~i~~~~L~~kv~~~~~~~------~~~~f~lky~DEeGD~i 59 (89)
T 1vd2_A 6 QVRVKAYYRGD-IMITHFEPSISFEGLCNEVRDMCSFD------NEQLFTMKWIDEEGDPC 59 (89)
T ss_dssp CEEEEEESSSC-EEEEEECTTCCHHHHHHHHHHHTTCC------SSCCEEEEECCSSSCCE
T ss_pred EEEEEEEECCE-EEEEECCCCCCHHHHHHHHHHHHCCC------CCCEEEEEEECCCCCCC
T ss_conf 18999994785-99998799989999999999996889------89827999998997950
No 10
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=1.00 E-value=1 Score=21.49 Aligned_cols=75 Identities=19% Similarity=0.244 Sum_probs=53.2
Q ss_pred CCCCEEEEECCC-----CEE--EEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCEEECCC-CCHHH
Q ss_conf 974348991247-----502--5531799999799999999874244654699999319999926897798267-74010
Q 002516 797 PMRTYTKVQKTG-----SVG--RSIDVTNFKNYDELCSAIERMFGLEGLLNDPRGTEWKLVYVDYENDVLLVGD-DPWEE 868 (913)
Q Consensus 797 ~~~~fVKV~m~G-----~ig--RkIDL~~~~sY~eL~~~L~~MF~~~g~l~d~~~s~~~lvYeD~EGD~lLvGD-vPWe~ 868 (913)
.++.-|||+-.. +++ |.|=+..--+|++|...+..-|++. .-++ -....++-|.|.|||+...++ +=|++
T Consensus 3 ~~sikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~-~~~~-i~~~~klkYkDEdGD~Vtl~sddDl~~ 80 (98)
T 1q1o_A 3 LGSILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNT-HNNN-ISPITKIKYQDEDGDFVVLGSDEDWNV 80 (98)
T ss_dssp SSCEEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHH-CSSC-CCCCCCEEEECSSSCEEEECSHHHHHH
T ss_pred CCCEEEEEEECCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCC-CCCC-CCCEEEEEEECCCCCEEEECCHHHHHH
T ss_conf 75189999935765666668679999669998999999999997678-6545-465047999969999887728899999
Q ss_pred CCCCE
Q ss_conf 01322
Q 002516 869 FVGCV 873 (913)
Q Consensus 869 Fv~sv 873 (913)
-+.++
T Consensus 81 A~e~~ 85 (98)
T 1q1o_A 81 AKEML 85 (98)
T ss_dssp HHHHH
T ss_pred HHHHH
T ss_conf 99997
Done!