BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 002517
         (913 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2LQN|A Chain A, Solution Structure Of Crkl
          Length = 303

 Score = 32.7 bits (73), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 23/99 (23%), Positives = 47/99 (47%), Gaps = 11/99 (11%)

Query: 313 GANTSSSVAMPQQQQQFSYSTTVTPIPSIGGAIGASQGLDTMSIAQKAESAMKALQTNVN 372
           G   S+S  +P+    ++   T TP+P++ G+ GA+  +  +   Q      KA+Q    
Sbjct: 191 GNRNSNSYGIPEPAHAYAQPQTTTPLPAVSGSPGAA--ITPLPSTQNGPVFAKAIQ---K 245

Query: 373 RLKESHARTMSSLKKTDEDLSSSLLKITDLESSLSAAGE 411
           R+  ++ +T  +L+  D      ++K+T +  +    GE
Sbjct: 246 RVPCAYDKTALALEVGD------IVKVTRMNINGQWEGE 278


>pdb|2LQW|A Chain A, Solution Structure Of Phosphorylated Crkl
          Length = 303

 Score = 30.4 bits (67), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 23/99 (23%), Positives = 46/99 (46%), Gaps = 11/99 (11%)

Query: 313 GANTSSSVAMPQQQQQFSYSTTVTPIPSIGGAIGASQGLDTMSIAQKAESAMKALQTNVN 372
           G   S+S  +P+     +   T TP+P++ G+ GA+  +  +   Q      KA+Q    
Sbjct: 191 GNRNSNSYGIPEPAHAXAQPQTTTPLPAVSGSPGAA--ITPLPSTQNGPVFAKAIQ---K 245

Query: 373 RLKESHARTMSSLKKTDEDLSSSLLKITDLESSLSAAGE 411
           R+  ++ +T  +L+  D      ++K+T +  +    GE
Sbjct: 246 RVPCAYDKTALALEVGD------IVKVTRMNINGQWEGE 278


>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
           Iii Effector Xcv3220 (Xopl)
          Length = 328

 Score = 30.0 bits (66), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 15/46 (32%), Positives = 27/46 (58%)

Query: 350 GLDTMSIAQKAESAMKALQTNVNRLKESHARTMSSLKKTDEDLSSS 395
           GL+T+++A+    A+ A   ++NRL+E   R    L +  E L+S+
Sbjct: 128 GLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLAST 173


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.314    0.128    0.356 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,791,309
Number of Sequences: 62578
Number of extensions: 753299
Number of successful extensions: 1631
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1626
Number of HSP's gapped (non-prelim): 9
length of query: 913
length of database: 14,973,337
effective HSP length: 108
effective length of query: 805
effective length of database: 8,214,913
effective search space: 6613004965
effective search space used: 6613004965
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 56 (26.2 bits)