BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002517
(913 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9Y5B6|GCFC1_HUMAN GC-rich sequence DNA-binding factor 1 OS=Homo sapiens GN=GCFC1 PE=1
SV=2
Length = 917
Score = 190 bits (482), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 198/758 (26%), Positives = 333/758 (43%), Gaps = 93/758 (12%)
Query: 186 AVQSGVIYDEAEIKAIRAKKDRLRQSGAKAPDYIPLD---GGSSSLRGDAEGSSDEEPEF 242
++ G I D A I A R K+ R+ G D+ P D G +R D +SD+E +
Sbjct: 213 VLRPGEIPDAAFIHAARKKRQMARELG----DFTPHDNEPGKGRLVREDENDASDDEDDD 268
Query: 243 PRRVAMFGERTASGKKKKGVFEDDDVDEDERPVVARVENDYEYVDEDVMWEEEQVRKGLG 302
+R +F + S ++K + E+ ++ + + E D +E WE+EQ+RKG+
Sbjct: 269 EKRRIVFSVKEKSQRQK--IAEEIGIEGSDDDALVTGEQD----EELSRWEQEQIRKGIN 322
Query: 303 KRIDDGSVRVGANTSSSVAMPQQQ--QQFSYSTTVTPIPSIGGAIGAS----QGLDTMSI 356
+V A+ + V M Q Q Y ++ IP A G+S Q D
Sbjct: 323 ------IPQVQASQPAEVNMYYQNTYQTMPYGSSYG-IPYSYTAYGSSDAKSQKTDNTVP 375
Query: 357 AQKAESAM---------KALQTNVNRLKESHARTMSSLKKTDEDLSSSLLKITDLESSLS 407
+ + M K L+ ++ +KE H +K + S I LE S
Sbjct: 376 FKTPSNEMTPVTIDLVKKQLKDRLDSMKELHKTNRQQHEKHLQSRVDSTRAIERLEGSSG 435
Query: 408 AAGEKFIFMQKLRDYVSVICDFLQDKAPYIETLEAEMQKLNKERASAILERRAADNDDEM 467
GE++ F+Q++R YV + + +K P I LE+ + +L K+RAS +++RR D DE
Sbjct: 436 GIGERYKFLQEMRGYVQDLLECFSEKVPLINELESAIHQLYKQRASRLVQRRQDDIKDES 495
Query: 468 TEVEAAIKAATLVIGDRGNSASKLIAASSAAQAAAAAAVKEQTNLPVKLDEFGRDMNLQK 527
+E SS + A A LD FGRD L +
Sbjct: 496 SEF------------------------SSHSNKALMAP---------NLDSFGRDRALYQ 522
Query: 528 RRDMERRAESRQHRRTRFDLKQLSSMDADISSQKLEGESTTDE-SDSETEAYQSNREELL 586
R AE R R ++ + AD LEG S+ DE + ++ + ++ +
Sbjct: 523 EHAKRRIAEREARRTRRRQAREQTGKMAD----HLEGLSSDDEETSTDITNFNLEKDRIS 578
Query: 587 KTAEHIFSDAAEEYSQLSVVKERFEKWKRDYSSSYRDAYMSLSTPAIMSPYVRLELLKWD 646
K + +F D E + + +K +FE W+ Y +SY+DAY+ L P + +P +RL+LL W
Sbjct: 579 KESGKVFEDVLESFYSIDCIKSQFEAWRSKYYTSYKDAYIGLCLPKLFNPLIRLQLLTWT 638
Query: 647 PLHEDA-DFSEMKWHNLLFNYGLPKDGEDFAHDDADANLVPTLVEKVALPILHHDIAYCW 705
PL DF M W L YG + ++ DD D L+PT+VEKV LP L W
Sbjct: 639 PLEAKCRDFENMLWFESLLFYGCEEREQE--KDDVDVALLPTIVEKVILPKLTVIAENMW 696
Query: 706 DMLSTRETKNAVSATILVMAYVPTSSEA--------LKDLLVAIHTCLAEAVANIAVPTW 757
D ST +T V T+ ++ P+ A LK LL+ + L + ++ +P +
Sbjct: 697 DPFSTTQTSRMVGITLKLINGYPSVVNAENKNTQVYLKALLLRMRRTLDD---DVFMPLY 753
Query: 758 SSLAMSAVPNAARIAAYR-FGVSVRLMRNICLWKEVFALPILEKLALDELLCRKVLPHVR 816
+ + + R F SV+L+ N W +F+ L++L++D LL R +L +
Sbjct: 754 PKNVLENKNSGPYLFFQRQFWSSVKLLGNFLQWYGIFSNKTLQELSIDGLLNRYILMAFQ 813
Query: 817 SIASNVHDAISRTERIVASLSGVWAGPSVTGSCCHKLQPLVDFMLSLAKTLEKKHLPGVT 876
+ + D+I + + ++ W +L+ +++ LA T+ + + G +
Sbjct: 814 N-SEYGDDSIKKAQNVINCFPKQWFMNLKGERTISQLENFCRYLVHLADTIYRNSI-GCS 871
Query: 877 ESETAGLARRLK---KMLVELNEYDNARDIARTFHLKE 911
+ E +K K+L + D+A +A ++KE
Sbjct: 872 DVEKRNARENIKQIVKLLASVRALDHAMSVASDHNVKE 909
>sp|P58501|GCFC1_MOUSE GC-rich sequence DNA-binding factor 1 OS=Mus musculus GN=Gcfc1 PE=1
SV=2
Length = 917
Score = 184 bits (467), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 198/757 (26%), Positives = 331/757 (43%), Gaps = 89/757 (11%)
Query: 186 AVQSGVIYDEAEIKAIRAKKDRLRQSGAKAPDYIPLD---GGSSSLRGDAEGSSDEEPEF 242
++ G I D A I A R K+ R+ G D+ P D G +R D +SD+E +
Sbjct: 213 VLRPGEIPDAAFIHAARKKRQLARELG----DFTPHDSEPGKGRLVREDENDASDDEDDD 268
Query: 243 PRRVAMFGERTASGKKKKGVFEDDDVDEDERPVVARVENDYEYVDEDVMWEEEQVRKGLG 302
+R +F + S ++K + E+ ++ + + E D +E WE+EQ+RKG
Sbjct: 269 EKRRIVFSVKEKSQRQK--IAEEIGIEGSDDDALVTGEQD----EELSRWEQEQIRKG-- 320
Query: 303 KRIDDGSVRVGANTSSSVAMPQQQQQFSYSTTVTPIPSIGGAIGAS----QGLDTMSIAQ 358
I+ V+ + +V Q Y + IP A G+S Q D +
Sbjct: 321 --INIPQVQASQPSEVNVYYQNTYQTMPYGASYG-IPYSYTAYGSSDAKSQKTDNTVPFK 377
Query: 359 KAESAM---------KALQTNVNRLKESHARTMSSLKKTDEDLSSSLLKITDLESSLSAA 409
+ M + L+ ++ +KE H +K + S I LE S
Sbjct: 378 TPSNEMAPVTIDLVKRQLKDRLDSMKELHKTNQQQHEKHLQSRVDSTRAIERLEGSSGGI 437
Query: 410 GEKFIFMQKLRDYVSVICDFLQDKAPYIETLEAEMQKLNKERASAILERRAADNDDEMTE 469
GE++ F+Q++R YV + + +K P I LE+ + +L K+RAS +++RR D DE +E
Sbjct: 438 GERYKFLQEMRGYVQDLLECFSEKVPLINELESAIHQLYKQRASRLVQRRQDDIKDESSE 497
Query: 470 VEAAIKAATLVIGDRGNSASKLIAASSAAQAAAAAAVKEQTNLPVKLDEFGRDMNLQKRR 529
+ A L+A + LD FGRD L +
Sbjct: 498 FSSHSSQA-------------LMAPN--------------------LDSFGRDRALYQEH 524
Query: 530 DMERRAESRQHRRTRFDLKQLSSMDADISSQKLEGESTTDESDS-ETEAYQSNREELLKT 588
R AE R R ++ + AD LEG S+ DE S + + ++ +LK
Sbjct: 525 AKRRIAEREARRTRRRQAREQTGQMAD----HLEGLSSDDEETSTDITNFNLEKDRILKE 580
Query: 589 AEHIFSDAAEEYSQLSVVKERFEKWKRDYSSSYRDAYMSLSTPAIMSPYVRLELLKWDPL 648
+ +F D E + + +K +FE W+ Y SY+DAY+ L P + +P +RL+LL W PL
Sbjct: 581 SSKVFEDVLESFYSIDCIKAQFEAWRSKYYMSYKDAYIGLCLPKLFNPLIRLQLLTWTPL 640
Query: 649 HEDA-DFSEMKWHNLLFNYGLPKDGEDFAHDDADANLVPTLVEKVALPILHHDIAYCWDM 707
DF M W L YG +D E D+AD L+PT+VEKV LP L WD
Sbjct: 641 EAKCRDFETMLWFESLLFYGC-EDREQ-EKDEADVALLPTIVEKVILPKLTVIAETMWDP 698
Query: 708 LSTRETKNAVSATILVMAYVPTSSEA--------LKDLLVAIHTCLAEAVANIAVPTWSS 759
ST +T V T+ ++ P+ A LK LL+ + L + ++ +P +
Sbjct: 699 FSTTQTSRMVGITMKLINGYPSVVNADNKNTQVYLKALLLRMRRTLDD---DVFMPLYPK 755
Query: 760 LAMSAVPNAARIAAYR-FGVSVRLMRNICLWKEVFALPILEKLALDELLCRKVLPHVRSI 818
+ + + R F SV+L+ N W +F+ L++L++D LL R +L ++
Sbjct: 756 NVLENKNSGPYLFFQRQFWSSVKLLGNFLQWYGIFSNKTLQELSIDGLLNRYILMAFQN- 814
Query: 819 ASNVHDAISRTERIVASLSGVWAGPSVTGSCCHKLQPLVDFMLSLAKTLEKKHLPGVTES 878
+ D+I + + ++ W +L+ +++ LA T+ + + G ++
Sbjct: 815 SEYGDDSIRKAQNVINCFPKQWFVNLKGERTISQLENFCRYLVHLADTIYRNSI-GCSDV 873
Query: 879 ETAGLARRLK---KMLVELNEYDNARDIARTFHLKEA 912
E +K K+L + D+A +A ++KE
Sbjct: 874 EKRNARENIKQIVKLLASVRALDHAISVASDHNVKEV 910
>sp|P16383|GCFC2_HUMAN GC-rich sequence DNA-binding factor 2 OS=Homo sapiens GN=GCFC2 PE=1
SV=2
Length = 781
Score = 134 bits (337), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 155/707 (21%), Positives = 306/707 (43%), Gaps = 109/707 (15%)
Query: 182 VGKIAVQSGV-IYDEAEIKAIRAKKDRLRQSGAKAPDYIPLD----GGSSSLRGDAEGSS 236
+G+ + S V I D A I+A R K++ R DYI LD S ++ ++E
Sbjct: 123 LGEKELSSTVKIPDAAFIQAARRKRELARAQD----DYISLDVQHTSSISGMKRESEDDP 178
Query: 237 DEEPEFPRRVAMFGERTASGKKKKGVFEDDDVDEDERPVVARVENDYEYVDEDV---MWE 293
+ EP+ + F R + +++ ++R E E ED WE
Sbjct: 179 ESEPDDHEKRIPFTLRPQTLRQRMA-----------EESISRNEETSEESQEDEKQDTWE 227
Query: 294 EEQVRKGLGKRIDDGSVRVGANTSSSVAMPQQQQQFSYSTTVTPIPSIGGAIGASQGLDT 353
++Q+RK + K I++ + + SS ++F S + P+
Sbjct: 228 QQQMRKAV-KIIEERDIDLSCGNGSSKV-----KKFDTSISFPPV--------------- 266
Query: 354 MSIAQKAESAMKALQTNVNRLKESHARTMSSLKKTDEDLSSSLLKITDLESSLSAAGEKF 413
E K L T + L+E+H + +K +D+ SS I +LESS S
Sbjct: 267 -----NLEIIKKQLNTRLTLLQETHRSHLREYEKYVQDVKSSKSTIQNLESS-SNQALNC 320
Query: 414 IFMQKLRDYVSVICDFLQDKAPYIETLEAEMQKLNKERASAILERRAADNDDEMTEVEAA 473
F + ++ YV + D L +K I+ +E+ M L ++A ++RR + E T ++
Sbjct: 321 KFYKSMKIYVENLIDCLNEKIINIQEIESSMHALLLKQAMTFMKRRQDELKHESTYLQQ- 379
Query: 474 IKAATLVIGDRGNSASKLIAASSAAQAAAAAAVKEQTNLPVKLDEFGRDMNLQKRRDMER 533
++ + +V E+T ++
Sbjct: 380 ------------------LSRKDETSTSGNFSVDEKTQWILE------------------ 403
Query: 534 RAESRQHRRTRFDLKQLSSMDADISSQKLEGESTTDESDS-ETEAYQSNREELLKTAEHI 592
ESR+ +R +Q + + + Q EG S+ DE S E +Q ++ ++L+ + +
Sbjct: 404 EIESRRTKR-----RQARVLSGNCNHQ--EGTSSDDELPSAEMIDFQKSQGDILQKQKKV 456
Query: 593 FSDAAEEYSQLSVVKERFEKWKRDYSSSYRDAYMSLSTPAIMSPYVRLELLKWDPLH-ED 651
F + +++ + + +F++W+ + SY +A++SL P +++P +R++L+ W+PL E
Sbjct: 457 FEEVQDDFCNIQNILLKFQQWREKFPDSYYEAFISLCIPKLLNPLIRVQLIDWNPLKLES 516
Query: 652 ADFSEMKWHNLLFNYGLPKDGEDFAHDDADANLVPTLVEKVALPILHHDIAYCWDMLSTR 711
EM W + + + +D ++ ++ K +P L + + WD LST
Sbjct: 517 TGLKEMPWFKSVEEFMDSSVEDSKKESSSDKKVLSAIINKTIIPRLTDFVEFLWDPLSTS 576
Query: 712 ETKNAVSATILVMAYVPTS----SEALKDLLVAIHTCLAEAVA-NIAVPTWSSLAMSAVP 766
+T + ++ +++ T S++ +DLL +I + + +AV ++ +P + SAV
Sbjct: 577 QTTSLITHCRVILEEHSTCENEVSKSRQDLLKSIVSRMKKAVEDDVFIPLYPK---SAVE 633
Query: 767 NA----ARIAAYRFGVSVRLMRNICLWKEVFALPILEKLALDELLCRKVLPHVRSIASNV 822
N ++ +F ++L RNI LW + L++L L +LL R ++ + + A+
Sbjct: 634 NKTSPHSKFQERQFWSGLKLFRNILLWNGLLTDDTLQELGLGKLLNRYLIIALLN-ATPG 692
Query: 823 HDAISRTERIVASLSGVWAGPSVTGSCCHKLQPLVDFMLSLAKTLEK 869
D + + ++ A L W S + +L+ + F+L A L +
Sbjct: 693 PDVVKKCNQVAACLPEKWFENSAMRTSIPQLENFIQFLLQSAHKLSR 739
>sp|Q8BKT3|GCFC2_MOUSE GC-rich sequence DNA-binding factor 2 OS=Mus musculus GN=Gcfc2 PE=1
SV=2
Length = 769
Score = 109 bits (273), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 75/314 (23%), Positives = 154/314 (49%), Gaps = 12/314 (3%)
Query: 563 EGESTTDE-SDSETEAYQSNREELLKTAEHIFSDAAEEYSQLSVVKERFEKWKRDYSSSY 621
EG S+ DE S +E + + ++L+ + +F D +++ + + +F++W+ + SY
Sbjct: 415 EGMSSDDELSPAEMTNFHKCQGDILQDCKKVFEDVHDDFCNVQNILLKFQQWREKFPDSY 474
Query: 622 RDAYMSLSTPAIMSPYVRLELLKWDPLHEDA-DFSEMKWHNLLFNYGLPKDGEDFAHDD- 679
+A++ P ++SP +R++LL W+PL D+ +M W + + + +D +D
Sbjct: 475 YEAFVGFCLPKLLSPLIRVQLLDWNPLKMDSIGLDKMPWFTAITEF-MESSMDDIGKEDG 533
Query: 680 ADANLVPTLVEKVALPILHHDIAYCWDMLSTRETKNAVSATILVMAYVPTSSEALK---D 736
+D ++ ++ K +P L + WD LST +T++ + + +E K D
Sbjct: 534 SDKKILAAVINKTVVPRLTDFVETIWDPLSTSQTRSLTVHCRVAFEQFASENEVSKNKQD 593
Query: 737 LLVAIHTCLAEAVA-NIAVPTW--SSLAMSAVPNAARIAAYRFGVSVRLMRNICLWKEVF 793
LL +I + +++ +I +P + SS P+ ++ +F +++L RNI LW +
Sbjct: 594 LLKSIVARMKKSIEDDIFIPLYPKSSEEGKMSPH-SKFQERQFWGALKLFRNILLWNGLL 652
Query: 794 ALPILEKLALDELLCRKVLPHVRSIASNVHDAISRTERIVASLSGVWAGPSVTGSCCHKL 853
L+ L L +LL R ++ + + A D + + +I A L W S + +L
Sbjct: 653 PDDTLQDLGLGKLLNRYLIISLTN-AVPGPDVVKKCSQIAACLPERWFENSAMRTSIPQL 711
Query: 854 QPLVDFMLSLAKTL 867
+ + F+L A+ L
Sbjct: 712 ENFIKFLLQSAQKL 725
Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 68/273 (24%), Positives = 115/273 (42%), Gaps = 45/273 (16%)
Query: 192 IYDEAEIKAIRAKKDRLRQSGAKAPDYIPLDGGSSSLRGDAEGSSDEEPE-----FPRRV 246
I D A I+A R K++ R G DYI LD S D + S++E+PE +R+
Sbjct: 123 IPDAAFIQAARRKRELARTPG----DYISLDVNHSCSTSDCKRSNEEDPESDPDDHEKRI 178
Query: 247 AMFGERTASGKKKKGVFEDDDVDEDERPVVARVENDYEYVDEDVMWEEEQVRKGLGKRID 306
+F + + +++ +E D +WE++Q+RK
Sbjct: 179 -LFTPKPQTLRQRMAEETSIRSEESSEESQEDENQD--------IWEQQQMRK------- 222
Query: 307 DGSVRVGANTSSSVAMPQQQQQFSYSTTVTPIPSIGGAIGASQGLDTMSIAQKAESAMKA 366
+VR+ A ++ ++ + Q T P + E K
Sbjct: 223 --AVRIPAGQNTDLSHSSKSQTLKKFDTSISFPPVN-----------------LEIIKKQ 263
Query: 367 LQTNVNRLKESHARTMSSLKKTDEDLSSSLLKITDLESSLSAAGEKFIFMQKLRDYVSVI 426
L + L+ESH +K ++D+ SS I +LES+ S + + F + ++ YV I
Sbjct: 264 LNNRLTLLQESHRSHQREYEKYEQDIKSSKTAIQNLESA-SDHAQNYRFYRGMKSYVENI 322
Query: 427 CDFLQDKAPYIETLEAEMQKLNKERASAILERR 459
D L +K I LE+ M L +R+ A+L+RR
Sbjct: 323 IDCLNEKIVSIVELESSMYTLLLKRSEALLKRR 355
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.125 0.343
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 309,395,156
Number of Sequences: 539616
Number of extensions: 12990238
Number of successful extensions: 62356
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 989
Number of HSP's that attempted gapping in prelim test: 56586
Number of HSP's gapped (non-prelim): 4485
length of query: 913
length of database: 191,569,459
effective HSP length: 127
effective length of query: 786
effective length of database: 123,038,227
effective search space: 96708046422
effective search space used: 96708046422
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 66 (30.0 bits)