Query 002517
Match_columns 913
No_of_seqs 215 out of 248
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 01:34:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002517.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002517hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2136 Transcriptional regula 100.0 3.2E-34 6.8E-39 320.2 19.2 142 562-720 292-434 (434)
2 PF07842 GCFC: GC-rich sequenc 100.0 1.1E-28 2.4E-33 267.1 13.0 206 603-811 1-273 (276)
3 PF15458 NTR2: Nineteen comple 99.9 7.6E-23 1.7E-27 219.3 15.5 203 108-388 1-234 (254)
4 KOG2136 Transcriptional regula 99.3 7.1E-13 1.5E-17 149.7 3.2 335 575-912 62-427 (434)
5 KOG2184 Tuftelin-interacting p 74.8 14 0.0003 46.1 9.7 139 601-750 340-480 (767)
6 PF12325 TMF_TATA_bd: TATA ele 70.4 1E+02 0.0022 30.4 12.7 32 416-447 77-108 (120)
7 PF00261 Tropomyosin: Tropomyo 55.5 3E+02 0.0065 29.8 15.9 109 358-471 99-217 (237)
8 PRK09039 hypothetical protein; 49.6 1.7E+02 0.0038 33.6 12.0 50 364-413 118-167 (343)
9 PF10267 Tmemb_cc2: Predicted 47.1 5.5E+02 0.012 30.4 15.7 101 362-472 212-312 (395)
10 COG2433 Uncharacterized conser 44.5 3.5E+02 0.0076 33.5 13.6 56 397-452 450-512 (652)
11 PF04156 IncA: IncA protein; 42.5 1.5E+02 0.0031 30.7 9.2 33 364-396 90-122 (191)
12 PF07889 DUF1664: Protein of u 41.6 3.2E+02 0.0069 27.3 10.7 54 385-438 70-123 (126)
13 PRK11637 AmiB activator; Provi 38.8 4.5E+02 0.0098 30.9 13.6 76 368-446 46-121 (428)
14 PF15112 DUF4559: Domain of un 38.7 1.2E+02 0.0026 34.4 8.1 51 400-450 243-296 (307)
15 PF12128 DUF3584: Protein of u 38.2 6.6E+02 0.014 33.8 16.3 58 365-425 291-350 (1201)
16 PF10234 Cluap1: Clusterin-ass 37.6 5.1E+02 0.011 29.1 12.7 89 361-459 161-249 (267)
17 PF05008 V-SNARE: Vesicle tran 34.4 2.4E+02 0.0051 25.0 8.0 64 366-429 7-73 (79)
18 PF04111 APG6: Autophagy prote 32.7 5.6E+02 0.012 29.2 12.5 69 365-433 46-115 (314)
19 KOG0976 Rho/Rac1-interacting s 31.8 5.1E+02 0.011 33.3 12.3 81 369-449 120-204 (1265)
20 PF10168 Nup88: Nuclear pore c 31.8 4.5E+02 0.0098 33.5 12.6 44 411-458 579-622 (717)
21 PF06657 Cep57_MT_bd: Centroso 31.5 3.9E+02 0.0085 24.4 8.9 63 360-441 15-77 (79)
22 PF09384 UTP15_C: UTP15 C term 30.1 2E+02 0.0044 29.0 7.6 57 690-749 73-132 (148)
23 PF13851 GAS: Growth-arrest sp 29.4 7.2E+02 0.016 26.5 13.8 97 360-458 26-122 (201)
24 PF04921 XAP5: XAP5, circadian 28.9 36 0.00078 37.3 2.2 14 44-57 9-22 (239)
25 TIGR03185 DNA_S_dndD DNA sulfu 28.5 7.3E+02 0.016 31.0 13.6 18 453-470 497-514 (650)
26 PF06632 XRCC4: DNA double-str 28.2 5.5E+02 0.012 29.8 11.5 89 352-449 117-208 (342)
27 PF10779 XhlA: Haemolysin XhlA 27.8 2.9E+02 0.0064 24.4 7.4 61 367-429 4-64 (71)
28 KOG1937 Uncharacterized conser 27.6 5.2E+02 0.011 31.1 11.0 73 354-426 310-398 (521)
29 PF06785 UPF0242: Uncharacteri 27.5 9.2E+02 0.02 28.0 12.6 43 409-451 171-217 (401)
30 KOG2894 Uncharacterized conser 27.3 35 0.00075 37.9 1.7 16 43-58 116-131 (331)
31 cd07665 BAR_SNX1 The Bin/Amphi 27.0 95 0.0021 33.9 5.0 43 428-472 22-64 (234)
32 KOG0885 Peptidyl-prolyl cis-tr 26.3 26 0.00056 40.4 0.5 30 45-82 203-232 (439)
33 PHA02562 46 endonuclease subun 24.8 1.3E+03 0.027 27.8 15.1 26 392-417 257-282 (562)
34 PF12128 DUF3584: Protein of u 24.4 1.9E+03 0.041 29.7 32.5 80 737-841 1007-1088(1201)
35 PF06825 HSBP1: Heat shock fac 24.4 76 0.0017 27.1 2.8 20 417-436 2-21 (54)
36 PF07842 GCFC: GC-rich sequenc 23.3 3.4E+02 0.0073 29.9 8.5 126 615-751 9-143 (276)
37 PF06160 EzrA: Septation ring 23.3 1.4E+03 0.03 28.1 14.4 104 365-472 396-500 (560)
38 PF04156 IncA: IncA protein; 23.1 8.3E+02 0.018 25.1 12.4 69 370-441 82-150 (191)
39 KOG0804 Cytoplasmic Zn-finger 22.9 7.3E+02 0.016 29.9 11.1 38 411-448 411-448 (493)
40 PF15387 DUF4611: Domain of un 22.5 68 0.0015 30.3 2.4 13 13-25 68-80 (96)
41 PF05149 Flagellar_rod: Parafl 21.5 1.2E+03 0.025 26.6 12.1 37 419-455 50-86 (289)
42 PF06060 Mesothelin: Pre-pro-m 21.3 3.4E+02 0.0074 33.9 8.6 74 780-860 162-257 (625)
43 PF06785 UPF0242: Uncharacteri 21.3 8.6E+02 0.019 28.2 10.9 15 439-453 159-173 (401)
44 KOG2391 Vacuolar sorting prote 20.8 1.4E+03 0.03 26.7 14.0 10 514-523 331-340 (365)
45 PF05276 SH3BP5: SH3 domain-bi 20.1 1.2E+03 0.026 25.8 13.6 53 392-447 151-203 (239)
46 PF11601 Shal-type: Shal-type 20.0 86 0.0019 23.2 1.9 19 632-650 4-22 (28)
No 1
>KOG2136 consensus Transcriptional regulators binding to the GC-rich sequences [Transcription]
Probab=100.00 E-value=3.2e-34 Score=320.21 Aligned_cols=142 Identities=46% Similarity=0.785 Sum_probs=126.5
Q ss_pred cCCCCCCCC-CchhHHHHHHHHHHHHHHhhhhhchhhhhccChHHHHHHHHHHHhhChhHHHHHHhhcchhhhhhhHHHH
Q 002517 562 LEGESTTDE-SDSETEAYQSNREELLKTAEHIFSDAAEEYSQLSVVKERFEKWKRDYSSSYRDAYMSLSTPAIMSPYVRL 640 (913)
Q Consensus 562 ~EG~sSDDE-~~~e~~~f~~~~~~il~~a~~VF~DV~edf~~i~~Il~rFe~WR~~~p~sY~dAyisLcLPkl~~P~VRl 640 (913)
.||.++||+ .++++.+|++.++.+++.+.+||.||.++||.+.+|+.+|..|+.+||.+|.+||++||.|++++||||+
T Consensus 292 ~Eg~ssdd~~~~~e~~~~se~~d~~iqka~nif~~~~~~~~~l~nv~~k~~~~~~~~~~s~~~ay~~l~yp~~~ap~ir~ 371 (434)
T KOG2136|consen 292 IEGDSSDDEEPDTETEAYSEWRDEVIQKAINIFSDASDEYSALSNVYLKFTRWRMKYPSSYRDAYSSLCYPKLLAPYIRL 371 (434)
T ss_pred hcccccccccchHHHHhhhhhhhHHHHHHhhcchhhhhhhhHHHHHHHHHHHhccCCCchHHHHHHhhhhhhhcccceee
Confidence 799999997 5889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcccCCCCCCCCCCCChhHHHHHhcCCCCCCCCCCCCCCCcCchHHHHHHHhHhhHHHHhhhhcccCCHHHHHHHHHHH
Q 002517 641 ELLKWDPLHEDADFSEMKWHNLLFNYGLPKDGEDFAHDDADANLVPTLVEKVALPILHHDIAYCWDMLSTRETKNAVSAT 720 (913)
Q Consensus 641 ELl~WnPL~~~~dle~m~Wf~~L~~yg~~~~~~~~~~dd~D~~llp~vIEKvVlPkLt~~v~~~WDPlSt~QT~~Lv~l~ 720 (913)
| .+|+||..++.|+...-+........|.++| .|+.||++++.|++||||+||+||++|+..|
T Consensus 372 ~-------------nsm~w~~~~~~~~~~~i~~i~k~l~s~~~~~----~~~~ipr~~d~~~~~wd~lstretr~li~g~ 434 (434)
T KOG2136|consen 372 Q-------------NSMPWFGLLFEFGPSSIKQIKKPLKSDANSV----KKLAIPRLHDHVKELWDRLSTRETRSLIEGC 434 (434)
T ss_pred c-------------ccCCcchHHHHcCccccchhcchhhccchhh----hhcccchHHHHHHHhccccchhhhhhHhcCC
Confidence 9 7999999999999653222112233344444 9999999999999999999999999999765
No 2
>PF07842 GCFC: GC-rich sequence DNA-binding factor-like protein; InterPro: IPR022783 Sequences in this group are similar to a region of a human GC-rich sequence DNA-binding factor homologue (Q9Y5B6 from SWISSPROT). This is thought to be a protein involved in transcriptional regulation due to partial homologies to a transcription repressor and histone-interacting protein []. This entry also contains tuftelin interacting protein 11 which has been identified as both a nuclear and cytoplasmic protein, and has been implicated in the secretory pathway. Sip1, a septin interacting protein [] is also a member of this family. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=99.95 E-value=1.1e-28 Score=267.06 Aligned_cols=206 Identities=30% Similarity=0.576 Sum_probs=182.8
Q ss_pred hHHHHHHHHHHHhhChhHHHHHHhhcchhhhhhhHHHHHhcccCCCCCC-----------------------------CC
Q 002517 603 LSVVKERFEKWKRDYSSSYRDAYMSLSTPAIMSPYVRLELLKWDPLHED-----------------------------AD 653 (913)
Q Consensus 603 i~~Il~rFe~WR~~~p~sY~dAyisLcLPkl~~P~VRlELl~WnPL~~~-----------------------------~d 653 (913)
++.|+.+|++||.+||++|+++|++.|+|++++|++|.+|+.||||.+. +.
T Consensus 1 l~~i~~~fe~l~~~~~~ey~~~~l~~~~~~~~~P~lr~~l~~W~PL~~p~~~~~~l~~~~~lL~~~~~~~~~~~~~~~~~ 80 (276)
T PF07842_consen 1 LEPILSRFEELKEKFPEEYRDAYLSLLAPALIAPLLRLELQNWDPLEDPSYGVDELKRWRSLLENDQDSSSSSSNRNMTP 80 (276)
T ss_pred ChHHHHHHHHHHHHCHHHHHHcChHHHHHHHHHHHHHHHHhccCCccCcchHHHHHHHHHHHHhhcccccccccccccCc
Confidence 4679999999999999999999999999999999999999999999865 47
Q ss_pred CCCChhHHHHHhcCCCC-CCCCCCCCCCCcCchH------------HHHHHHhHhhHHHHhhhhcccCCHHHHHHHHHHH
Q 002517 654 FSEMKWHNLLFNYGLPK-DGEDFAHDDADANLVP------------TLVEKVALPILHHDIAYCWDMLSTRETKNAVSAT 720 (913)
Q Consensus 654 le~m~Wf~~L~~yg~~~-~~~~~~~dd~D~~llp------------~vIEKvVlPkLt~~v~~~WDPlSt~QT~~Lv~l~ 720 (913)
+++|.|+.-+..|++.. .+-+..+.|++.++|+ ++|||+|+|||++.|+. |||+|.+||++++.++
T Consensus 81 ye~l~w~~~lp~~~~~~~~~w~~~~~~~~~~ll~~W~~~Lp~~~~~~ileqlVlPKL~~~V~~-WdP~s~~~t~~~~~~h 159 (276)
T PF07842_consen 81 YESLIWEIWLPKVRSAIANEWDPRDPDPDLSLLEAWSPLLPPWILDNILEQLVLPKLQAAVEE-WDPLSDSQTRNLVPLH 159 (276)
T ss_pred HHHhhHHHHHHHHHHhhhcccCCCCCchHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHh-CcccCcccccccchHH
Confidence 99999999999988432 2222235677889999 99999999999999998 9999999999999999
Q ss_pred HHHHhhcCCCc-HHHHHHHHHHHHHHHHHhhh----------------cccc-CCchhhhh-hcchHHHHHH------HH
Q 002517 721 ILVMAYVPTSS-EALKDLLVAIHTCLAEAVAN----------------IAVP-TWSSLAMS-AVPNAARIAA------YR 775 (913)
Q Consensus 721 ~~v~~~~~~~s-k~~q~Ll~ai~~Rlk~aVed----------------vfIP-l~pk~v~~-~~p~~s~f~~------rq 775 (913)
.-|+.++|... ..++.|+..|+.||+.++++ ||+| .|++.+.+ -.|....+.. ++
T Consensus 160 ~wl~pwlp~l~~~~l~~l~~~ir~kl~~~l~~W~~~~~~~~~l~~Wk~vf~~~~~~~~~~~~i~Pkl~~~l~~~~i~p~~ 239 (276)
T PF07842_consen 160 SWLFPWLPLLGSERLEPLYPAIRRKLRSALDNWHPSRSALAMLSPWKDVFIPEEWDKLLLRHILPKLAKFLREFVINPRQ 239 (276)
T ss_pred HHHhccCcccCchhHHHHHHHHHHHHHHHHHccCcccchhhhhhHHHHhCCHhhHHHHHHHhhchHHHHHHHhCCCChhh
Confidence 99999998765 88899999999999999988 9999 99988763 4566666766 34
Q ss_pred HhHHHHHHhhhhccccccchHHHHHhhHhHHHhhhh
Q 002517 776 FGVSVRLMRNICLWKEVFALPILEKLALDELLCRKV 811 (913)
Q Consensus 776 FwsavKLL~Nil~W~~~l~~~~L~~L~l~~LLnr~l 811 (913)
.++++|+||+.|.++++.++|..|..+++++|++
T Consensus 240 --q~l~~~~~vl~W~~~l~~~~l~~ll~~~ffpkwl 273 (276)
T PF07842_consen 240 --QDLKPLRNVLAWKDLLPPSVLVQLLEDEFFPKWL 273 (276)
T ss_pred --cCHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHH
Confidence 6799999999999999999999999999999976
No 3
>PF15458 NTR2: Nineteen complex-related protein 2
Probab=99.89 E-value=7.6e-23 Score=219.35 Aligned_cols=203 Identities=25% Similarity=0.400 Sum_probs=125.9
Q ss_pred CCCcHHHHHHHHhcCCCCCCCCCCCCCCceeeecCCCCCCCcchhhcccCCCCCCCCCCCc-hhhhhhhhccccCccc--
Q 002517 108 GTYTEEYLLELRKNTKTLKAPSSKPPAEPVVVLRGSIKPEDSNLTRVQQKPSRDSSDSDSD-HKAETEKRFASLGVGK-- 184 (913)
Q Consensus 108 ~~Yt~e~L~eL~~~t~~~~~~~~~~~~ep~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-- 184 (913)
|+|+++||.|||+|||+||+..+..... .. .. -+.+....| |.++.
T Consensus 1 p~Ys~eYl~eL~~sTp~tP~~~~~~~~~-------------~d----------------~~~~~ld~~~~~--g~~~~~~ 49 (254)
T PF15458_consen 1 PTYSKEYLDELRSSTPSTPKNVSSSKSK-------------DD----------------EDEMNLDDMELF--GEVVVSS 49 (254)
T ss_pred CCCcHHHHHHHHhcCCCCCccccccccc-------------cc----------------hhhcccchhhhc--cchhhhh
Confidence 7999999999999999998764211100 00 00 011223333 32221
Q ss_pred --ccccCCCCCCHHHHHHHHHHHHHH-HhcC--CCCCCcccCCCC-----------C-----CCCCCCCCCC--CCCCCC
Q 002517 185 --IAVQSGVIYDEAEIKAIRAKKDRL-RQSG--AKAPDYIPLDGG-----------S-----SSLRGDAEGS--SDEEPE 241 (913)
Q Consensus 185 --~~~~~~~IPdaa~I~aAr~kR~~l-R~~~--~~~~DyIpLd~~-----------~-----~~~r~~~~~~--~De~de 241 (913)
....+..||++++|+++|+||+++ |+.+ ..+.+||||++. . ..+|+..+++ .+++||
T Consensus 50 ~~~~~~~~~IPt~a~I~e~K~rR~rla~e~~~~~~Ed~yIsL~d~~d~~~~~~~~~~~~~~~~~srLvredddl~eG~de 129 (254)
T PF15458_consen 50 DEPDSSSSSIPTEAEIREAKERRARLAREQGASSDEDEYISLDDNDDKDDLMEINGGPKKKKEESRLVREDDDLGEGFDE 129 (254)
T ss_pred hccccccCCCCCHHHHHHHHHHHHHHHHhhcccCCCCcceeCCCCCCcchhhhcccccccCCcccccccccccccccchh
Confidence 135678999999999999999999 4432 123459999982 1 1234443333 344666
Q ss_pred c--CCceeeccccccc---ccccccccccCccccccCcccccccCCccchhhhhhHHHHHHHhhcCCccCCCccccccCC
Q 002517 242 F--PRRVAMFGERTAS---GKKKKGVFEDDDVDEDERPVVARVENDYEYVDEDVMWEEEQVRKGLGKRIDDGSVRVGANT 316 (913)
Q Consensus 242 ~--~~RI~~~g~k~~~---~r~r~~~~e~i~~~~~e~~~~~~~~~~~~edEE~~~WE~eQiRKg~~~~~d~~~~~~~~~~ 316 (913)
| ++||++ |++..+ .|+|+.|.++|+. .++++++|+..+||++|||||+.+.. ..
T Consensus 130 f~ed~rlaL-g~ka~~~~~~~rR~~i~e~I~~-----------~~~d~~de~~~~wE~aQ~rkg~~~~~-------~~-- 188 (254)
T PF15458_consen 130 FVEDGRLAL-GKKAEREQKRRRREEIEEAIND-----------DDDDSEDEERAEWEAAQLRKGMDGLS-------DE-- 188 (254)
T ss_pred hhccCCccc-CHHHHHHHHHHHHHHHHHHHHh-----------cccccchhhHHHHHHHHHHhhccCCc-------cc--
Confidence 5 799996 988643 3667888888861 12345679999999999999997642 00
Q ss_pred CCCCcccccccccCCCCCCCCCCCCCCCCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q 002517 317 SSSVAMPQQQQQFSYSTTVTPIPSIGGAIGASQGLDTMSIAQKAESAMKALQTNVNRLKESHARTMSSLKKT 388 (913)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~ps~~~~~~~~~~~~~~~v~qq~e~~kk~L~~~L~~L~e~h~~~~~el~k~ 388 (913)
...+++++++ ..+++|+++ .+..+|...|..|+..|+.+...++..
T Consensus 189 ----~~~~~~~~ip---~~tpLP~L~-------------------~~~~rL~~~l~~le~~~~~~~~~l~~l 234 (254)
T PF15458_consen 189 ----KDRYKPPPIP---KITPLPSLS-------------------ECLERLRESLSSLEDSKSQLQQQLESL 234 (254)
T ss_pred ----hhccCCCCCc---ccCCCCchh-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0011111111 223344443 334788999999999887766555544
No 4
>KOG2136 consensus Transcriptional regulators binding to the GC-rich sequences [Transcription]
Probab=99.31 E-value=7.1e-13 Score=149.66 Aligned_cols=335 Identities=9% Similarity=-0.091 Sum_probs=266.6
Q ss_pred HHHHHHHHHHHHHHhhhhhchhhhhccChHHHHHHHHHHHhhChhHHHHHHhhcchhhhhhhHHHHHhcccCCCCC-CCC
Q 002517 575 TEAYQSNREELLKTAEHIFSDAAEEYSQLSVVKERFEKWKRDYSSSYRDAYMSLSTPAIMSPYVRLELLKWDPLHE-DAD 653 (913)
Q Consensus 575 ~~~f~~~~~~il~~a~~VF~DV~edf~~i~~Il~rFe~WR~~~p~sY~dAyisLcLPkl~~P~VRlELl~WnPL~~-~~d 653 (913)
+..+.-......++..+.+.++...++.+-.+...+..|.-+|..+|.++++..|.+..+.+..|+.+..|.+|.+ +.+
T Consensus 62 ~~~~~l~~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~s~s~~~~~~~~i~d~~~~~~~r~~~~~a~~~~~~~~~ 141 (434)
T KOG2136|consen 62 IRSSALTKGSGSEAGGKFPKGAEPSNSLKLDKRPDESKEVPRASESYFQSEIEEIPDVFFVKLARYSKELARLLGDEYSD 141 (434)
T ss_pred CCccccccccchhhcCCCccccccccccccccccchhcccchhhhhhcccccccCchHHHHHHHHHHHHHHhhhcchhhh
Confidence 3333334455567789999999999999999999999999999999999999999999999999999999999986 578
Q ss_pred CCCChhHHHHHhcCCCCCCCCCCCCCCCcCchHHHHHHHhHhhHHHHhhhhcccCCHHHHHHHHHHHHHHHhhcC----C
Q 002517 654 FSEMKWHNLLFNYGLPKDGEDFAHDDADANLVPTLVEKVALPILHHDIAYCWDMLSTRETKNAVSATILVMAYVP----T 729 (913)
Q Consensus 654 le~m~Wf~~L~~yg~~~~~~~~~~dd~D~~llp~vIEKvVlPkLt~~v~~~WDPlSt~QT~~Lv~l~~~v~~~~~----~ 729 (913)
+.++.|+..++.+++..+.. .+.+.+..+.+......+.|+...--..-|++....|..--...-......++ +
T Consensus 142 d~~~~~~~s~~~~~~e~d~~--~~~~~~v~~~~~e~gv~~~~~~~~~~d~dse~e~w~~~~~~k~~~~r~~~~~~~~~~~ 219 (434)
T KOG2136|consen 142 DEEKSKIITELNRSSEDDRP--SDKDGHVKLTNQEDGVLESEHGQDEDDEDSEDEEWEQKQIRKAVDAREILGLPRPVEI 219 (434)
T ss_pred HHHHHHHHHHHhhhcccccc--cCCcchhhcccccceeeeccccchhhhhhhhhhHHHHHHHHHHHHHHHhcCCcccccc
Confidence 99999999999998864332 12333344445555577788877766667777777666544433332222232 3
Q ss_pred CcHHHHHHHHHHHHHHHHHhh-hccccCCchhhhh-hcchHHHHHHHHHhHHHHHHhhhhccccccchHHHHHhhHhHHH
Q 002517 730 SSEALKDLLVAIHTCLAEAVA-NIAVPTWSSLAMS-AVPNAARIAAYRFGVSVRLMRNICLWKEVFALPILEKLALDELL 807 (913)
Q Consensus 730 ~sk~~q~Ll~ai~~Rlk~aVe-dvfIPl~pk~v~~-~~p~~s~f~~rqFwsavKLL~Nil~W~~~l~~~~L~~L~l~~LL 807 (913)
.++..+.++..-+..|++..+ ..+++.|++.+.. ...+.+-|+.+.+|..+.|+.+...|.++-....+...|++.++
T Consensus 220 ~~~~~~~~~~~~~~~m~~l~df~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~i~~~~~~r~~~~~~a~~~~~Eg~ssdd 299 (434)
T KOG2136|consen 220 ADKMFQSLARYKRQFMRELLDFTPHENEFMKGRLCRDFENMSGFFSRDKEARRILFEVEERSQRIRAAEELVIEGDSSDD 299 (434)
T ss_pred cchhhHHHHHHHHHHHHHHhccchhhhhHhhccccccccchhhhhhhhHHHHHHHhhhhhhHhHHhhhhhhhhccccccc
Confidence 456677788888888888888 5677788876542 22223558889999999999999999999999999999999999
Q ss_pred hhhhhhcccccCCCchhHHHHHHH-----------HHhcccccccCCCCCCccccccchHHHHHHHHHHHHHhhcCCCCC
Q 002517 808 CRKVLPHVRSIASNVHDAISRTER-----------IVASLSGVWAGPSVTGSCCHKLQPLVDFMLSLAKTLEKKHLPGVT 876 (913)
Q Consensus 808 nr~lL~~L~~~~~~~~d~i~k~~~-----------Iva~lP~~Wf~~~~~~~~~~~L~~f~~~l~~l~~~l~~~~~~g~~ 876 (913)
+++.+....+.- ...|.|.|+.. ++.|||.-||.+...+.+..++.+||.|.++++-.+..++-.++.
T Consensus 300 ~~~~~e~~~~se-~~d~~iqka~nif~~~~~~~~~l~nv~~k~~~~~~~~~~s~~~ay~~l~yp~~~ap~ir~~nsm~w~ 378 (434)
T KOG2136|consen 300 EEPDTETEAYSE-WRDEVIQKAINIFSDASDEYSALSNVYLKFTRWRMKYPSSYRDAYSSLCYPKLLAPYIRLQNSMPWF 378 (434)
T ss_pred ccchHHHHhhhh-hhhHHHHHHhhcchhhhhhhhHHHHHHHHHHHhccCCCchHHHHHHhhhhhhhcccceeecccCCcc
Confidence 999999998864 47888999998 999999999999999999999999999999999999886656777
Q ss_pred chhhH---HHHHHHHHHHHh----------cCcchHHHHHHHHhccccc
Q 002517 877 ESETA---GLARRLKKMLVE----------LNEYDNARDIARTFHLKEA 912 (913)
Q Consensus 877 ~~~~~---~~~~~l~~~Lv~----------l~~~~~A~~~~~~~~l~~~ 912 (913)
....+ ..+..++++|+. -+.+||+..+...+..++.
T Consensus 379 ~~~~~~~~~~i~~i~k~l~s~~~~~~~~~ipr~~d~~~~~wd~lstret 427 (434)
T KOG2136|consen 379 GLLFEFGPSSIKQIKKPLKSDANSVKKLAIPRLHDHVKELWDRLSTRET 427 (434)
T ss_pred hHHHHcCccccchhcchhhccchhhhhcccchHHHHHHHhccccchhhh
Confidence 65543 678888899988 7889999998887776653
No 5
>KOG2184 consensus Tuftelin-interacting protein TIP39, contains G-patch domain [RNA processing and modification]
Probab=74.80 E-value=14 Score=46.15 Aligned_cols=139 Identities=17% Similarity=0.235 Sum_probs=90.0
Q ss_pred cChHHHHHHHHHHHhhChhHHHHHHhhcchhhhhhhHHHHHhcccCCCCCC-CCCCCChhHHHHHhcCCCCCCCCCCCCC
Q 002517 601 SQLSVVKERFEKWKRDYSSSYRDAYMSLSTPAIMSPYVRLELLKWDPLHED-ADFSEMKWHNLLFNYGLPKDGEDFAHDD 679 (913)
Q Consensus 601 ~~i~~Il~rFe~WR~~~p~sY~dAyisLcLPkl~~P~VRlELl~WnPL~~~-~dle~m~Wf~~L~~yg~~~~~~~~~~dd 679 (913)
-++...-.+|+.-+-.||+.|.-....=...++++|+.-=.+..|+||.++ -+++...=.+.++..+..... . +-
T Consensus 340 ~tld~~~~~fe~L~~eY~~~~~~~~l~~~a~~i~~pL~~~~~~~Wdpl~d~~~g~e~i~~wk~lL~~~~~~~~--~--~~ 415 (767)
T KOG2184|consen 340 LTLDELAILFELLRMEYPEEYTLKSLSSIAVSIVLPLLKRYLKFWDPLEDPYSGLESISKWKALLEQSDDLRK--R--DE 415 (767)
T ss_pred ccHHHHHHHHHHhhhhccccccccccccchhhhhhHHHHHHhhccCcccCccchhHHHHHHHhhhhhhccchh--h--cc
Confidence 345567778888889999999888777677889999988888999999975 567776655666655432110 0 01
Q ss_pred CCcCchHHHHHHHhHhhHHHHhhhhcccCCHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHH-HHHHHHhh
Q 002517 680 ADANLVPTLVEKVALPILHHDIAYCWDMLSTRETKNAVSATILVMAYVPTSSEALKDLLVAIH-TCLAEAVA 750 (913)
Q Consensus 680 ~D~~llp~vIEKvVlPkLt~~v~~~WDPlSt~QT~~Lv~l~~~v~~~~~~~sk~~q~Ll~ai~-~Rlk~aVe 750 (913)
+ .-=..+|.-+|+|++-.-.-..|-|--.-+-..++..-..++-. .-+..++..++ -++..+|+
T Consensus 416 ~--~~~~~li~e~~~p~vr~~~l~~w~~~d~~~m~~lle~W~~~lp~-----~VldnIl~~~v~pkl~~~v~ 480 (767)
T KOG2184|consen 416 I--DPYSSLIWEGVMPKVRKAELATWEPRDMLPMLSLLEAWVPLLPS-----WVLDNILDQLVLPKLSAAVS 480 (767)
T ss_pred c--cccceeeeeeecHHHHHHHHhccCccchhHHHhHHHHHHHhhhH-----HHHHHHHHHHHHHHHHHHHh
Confidence 1 12356788889999887444678887666666655544433221 22344444443 46666776
No 6
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=70.41 E-value=1e+02 Score=30.43 Aligned_cols=32 Identities=25% Similarity=0.491 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 002517 416 MQKLRDYVSVICDFLQDKAPYIETLEAEMQKL 447 (913)
Q Consensus 416 yQemr~YV~dL~~cL~EK~p~IeeLE~~~~~L 447 (913)
++++..--..++..|.||.-.+++|...+..|
T Consensus 77 l~~l~~ry~t~LellGEK~E~veEL~~Dv~Dl 108 (120)
T PF12325_consen 77 LEELQQRYQTLLELLGEKSEEVEELRADVQDL 108 (120)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 45555555678999999999999999776543
No 7
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=55.51 E-value=3e+02 Score=29.78 Aligned_cols=109 Identities=18% Similarity=0.256 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHhHhhHHHHHHhHHHHHHHhhchhhHhHHHHHHHHHHH-------HHHHHH
Q 002517 358 QKAESAMKALQTNVNRLKESHAR---TMSSLKKTDEDLSSSLLKITDLESSLSAAGEKFIFMQKLRD-------YVSVIC 427 (913)
Q Consensus 358 qq~e~~kk~L~~~L~~L~e~h~~---~~~el~k~~e~l~~s~~~i~~lE~~~~~a~~ky~fyQemr~-------YV~dL~ 427 (913)
.|+..++..+.+.-..+.++.++ ....|++.++-++.+...|..||..+..++.+++-+..--. .+++=+
T Consensus 99 ~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i 178 (237)
T PF00261_consen 99 QQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKI 178 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH
Confidence 35566666666666666666654 45778888888888889999999988888777765443332 223334
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Q 002517 428 DFLQDKAPYIETLEAEMQKLNKERASAILERRAADNDDEMTEVE 471 (913)
Q Consensus 428 ~cL~EK~p~IeeLE~~~~~Ll~eRa~~l~kRR~~D~~De~~~~~ 471 (913)
.+|.+| +.+.|.++.. .+|-...++++-+++.+++....
T Consensus 179 ~~L~~~---lkeaE~Rae~--aE~~v~~Le~~id~le~eL~~~k 217 (237)
T PF00261_consen 179 RDLEEK---LKEAENRAEF--AERRVKKLEKEIDRLEDELEKEK 217 (237)
T ss_dssp HHHHHH---HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH---HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555 4444444433 23445556777777777776554
No 8
>PRK09039 hypothetical protein; Validated
Probab=49.60 E-value=1.7e+02 Score=33.60 Aligned_cols=50 Identities=16% Similarity=0.290 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHhHHHHHHHhhchhhHhHHH
Q 002517 364 MKALQTNVNRLKESHARTMSSLKKTDEDLSSSLLKITDLESSLSAAGEKF 413 (913)
Q Consensus 364 kk~L~~~L~~L~e~h~~~~~el~k~~e~l~~s~~~i~~lE~~~~~a~~ky 413 (913)
...|.+.|..++.........+.+..+.|+.-+.+|..+|..+..++.+.
T Consensus 118 ~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~ 167 (343)
T PRK09039 118 AGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRD 167 (343)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556777777777777777888888888888888888888888776665
No 9
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=47.08 E-value=5.5e+02 Score=30.37 Aligned_cols=101 Identities=19% Similarity=0.261 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHhHHHHHHHhhchhhHhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 002517 362 SAMKALQTNVNRLKESHARTMSSLKKTDEDLSSSLLKITDLESSLSAAGEKFIFMQKLRDYVSVICDFLQDKAPYIETLE 441 (913)
Q Consensus 362 ~~kk~L~~~L~~L~e~h~~~~~el~k~~e~l~~s~~~i~~lE~~~~~a~~ky~fyQemr~YV~dL~~cL~EK~p~IeeLE 441 (913)
...+.|.+.|.++++.|..-..++++...++. ..+..+-..+. ++||++=+ |-+=|+|+.+--+.= |..|-
T Consensus 212 ~~l~~~~~el~eik~~~~~L~~~~e~Lk~~~~---~e~~~~~~~Lq--EEr~R~er-LEeqlNd~~elHq~E---i~~LK 282 (395)
T PF10267_consen 212 LGLQKILEELREIKESQSRLEESIEKLKEQYQ---REYQFILEALQ--EERYRYER-LEEQLNDLTELHQNE---IYNLK 282 (395)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH--HhHHHHHH-HHHHHHHHHHHHHHH---HHHHH
Confidence 44556677777888877665555655554443 23333333333 45666533 666666666643322 33332
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH
Q 002517 442 AEMQKLNKERASAILERRAADNDDEMTEVEA 472 (913)
Q Consensus 442 ~~~~~Ll~eRa~~l~kRR~~D~~De~~~~~~ 472 (913)
.+ ++.+++|..+...-|..|+.|-+.-|+.
T Consensus 283 qe-La~~EEK~~Yqs~eRaRdi~E~~Es~qt 312 (395)
T PF10267_consen 283 QE-LASMEEKMAYQSYERARDIWEVMESCQT 312 (395)
T ss_pred HH-HHhHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 22 3456677777888888888777777763
No 10
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=44.50 E-value=3.5e+02 Score=33.55 Aligned_cols=56 Identities=25% Similarity=0.229 Sum_probs=41.4
Q ss_pred HHHHHHhhchhhH-------hHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 002517 397 LKITDLESSLSAA-------GEKFIFMQKLRDYVSVICDFLQDKAPYIETLEAEMQKLNKERA 452 (913)
Q Consensus 397 ~~i~~lE~~~~~a-------~~ky~fyQemr~YV~dL~~cL~EK~p~IeeLE~~~~~Ll~eRa 452 (913)
..|..|++++..+ ..+-+.++.+..-|..|---|.||...|++|+.....|.+=|+
T Consensus 450 ~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~k~~~ 512 (652)
T COG2433 450 REIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAELRKMRK 512 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555565554443 2344567778888888999999999999999988888876665
No 11
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=42.49 E-value=1.5e+02 Score=30.70 Aligned_cols=33 Identities=30% Similarity=0.396 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHhH
Q 002517 364 MKALQTNVNRLKESHARTMSSLKKTDEDLSSSL 396 (913)
Q Consensus 364 kk~L~~~L~~L~e~h~~~~~el~k~~e~l~~s~ 396 (913)
...+...|..+++.-.....++.....+.....
T Consensus 90 l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~ 122 (191)
T PF04156_consen 90 LQQLQEELDQLQERIQELESELEKLKEDLQELR 122 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 344455555555555444444444444444333
No 12
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=41.57 E-value=3.2e+02 Score=27.30 Aligned_cols=54 Identities=17% Similarity=0.195 Sum_probs=34.3
Q ss_pred hHhhHHHHHHhHHHHHHHhhchhhHhHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 002517 385 LKKTDEDLSSSLLKITDLESSLSAAGEKFIFMQKLRDYVSVICDFLQDKAPYIE 438 (913)
Q Consensus 385 l~k~~e~l~~s~~~i~~lE~~~~~a~~ky~fyQemr~YV~dL~~cL~EK~p~Ie 438 (913)
+.+.+..|+......+....++..+.....-++.==.+|+.++.-|..|+..|+
T Consensus 70 Id~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ie 123 (126)
T PF07889_consen 70 IDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEIE 123 (126)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444455544444555555666666677777777788888888888865554
No 13
>PRK11637 AmiB activator; Provisional
Probab=38.83 E-value=4.5e+02 Score=30.89 Aligned_cols=76 Identities=14% Similarity=0.273 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHhHhhHHHHHHhHHHHHHHhhchhhHhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 002517 368 QTNVNRLKESHARTMSSLKKTDEDLSSSLLKITDLESSLSAAGEKFIFMQKLRDYVSVICDFLQDKAPYIETLEAEMQK 446 (913)
Q Consensus 368 ~~~L~~L~e~h~~~~~el~k~~e~l~~s~~~i~~lE~~~~~a~~ky~fyQemr~YV~dL~~cL~EK~p~IeeLE~~~~~ 446 (913)
++.|..++......+.++......+......|..++.++..+..+ +.++..-+..+-.=+...-..|.+++.++..
T Consensus 46 ~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~---i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~ 121 (428)
T PRK11637 46 RDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRK---LRETQNTLNQLNKQIDELNASIAKLEQQQAA 121 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444455555555554444322 2233333444444444444444444444433
No 14
>PF15112 DUF4559: Domain of unknown function (DUF4559)
Probab=38.72 E-value=1.2e+02 Score=34.43 Aligned_cols=51 Identities=18% Similarity=0.268 Sum_probs=37.4
Q ss_pred HHHhhchhhHhHHHHHHHHHHHHHH---HHHHHHHhhhhHHHHHHHHHHHHHHH
Q 002517 400 TDLESSLSAAGEKFIFMQKLRDYVS---VICDFLQDKAPYIETLEAEMQKLNKE 450 (913)
Q Consensus 400 ~~lE~~~~~a~~ky~fyQemr~YV~---dL~~cL~EK~p~IeeLE~~~~~Ll~e 450 (913)
-.+|.+....++...+++.|+.|+. ||-.+|.+++-.|+.|+.++.++..+
T Consensus 243 ~~~e~~~~~~ee~~~~l~~~~~fL~~NkDL~~~l~~e~qkL~~l~~k~~~~~~~ 296 (307)
T PF15112_consen 243 LQAEEQEVLPEEDSKRLEVLKEFLRNNKDLRSNLQEELQKLDSLQTKHQKLESD 296 (307)
T ss_pred HHHhhccccchhhhHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHhcchhhh
Confidence 4445443333567888999999985 68889999998888888777666553
No 15
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=38.21 E-value=6.6e+02 Score=33.84 Aligned_cols=58 Identities=12% Similarity=0.229 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhHHHHHHhHHHHHHHhhchhhHhHHHHHHHH--HHHHHHH
Q 002517 365 KALQTNVNRLKESHARTMSSLKKTDEDLSSSLLKITDLESSLSAAGEKFIFMQK--LRDYVSV 425 (913)
Q Consensus 365 k~L~~~L~~L~e~h~~~~~el~k~~e~l~~s~~~i~~lE~~~~~a~~ky~fyQe--mr~YV~d 425 (913)
..+...+..+...+.....++. ..+......|..++..+..+..+|.+|+. +-.+..+
T Consensus 291 ~~~~~~~~~l~~~~~e~~~~~~---~~~~~~~~~l~~~~~~L~~i~~~~~~ye~~~i~~~~~~ 350 (1201)
T PF12128_consen 291 NELNEELEKLEDEIKELRDELN---KELSALNADLARIKSELDEIEQQKKDYEDADIEQLIAR 350 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
Confidence 3444444444444444444433 35555567888888899999999999995 4455443
No 16
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=37.65 E-value=5.1e+02 Score=29.08 Aligned_cols=89 Identities=21% Similarity=0.263 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHhHHHHHHHhhchhhHhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 002517 361 ESAMKALQTNVNRLKESHARTMSSLKKTDEDLSSSLLKITDLESSLSAAGEKFIFMQKLRDYVSVICDFLQDKAPYIETL 440 (913)
Q Consensus 361 e~~kk~L~~~L~~L~e~h~~~~~el~k~~e~l~~s~~~i~~lE~~~~~a~~ky~fyQemr~YV~dL~~cL~EK~p~IeeL 440 (913)
..+-+.|++.+..+...-......+.....+-.+-..+|++.-.++..+..|+.=.|.+|= .||+ .-+.|
T Consensus 161 ~~iE~~l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRP------Afmd----EyEkl 230 (267)
T PF10234_consen 161 NEIEKALKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRP------AFMD----EYEKL 230 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCh------HHHH----HHHHH
Confidence 3455666666666655554444444443333333335677666677778888887777773 3444 36889
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 002517 441 EAEMQKLNKERASAILERR 459 (913)
Q Consensus 441 E~~~~~Ll~eRa~~l~kRR 459 (913)
|.+++.|+......+....
T Consensus 231 E~EL~~lY~~Y~~kfRNl~ 249 (267)
T PF10234_consen 231 EEELQKLYEIYVEKFRNLD 249 (267)
T ss_pred HHHHHHHHHHHHHHHHhHH
Confidence 9999998888776665543
No 17
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=34.44 E-value=2.4e+02 Score=24.95 Aligned_cols=64 Identities=19% Similarity=0.358 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHH-HHHHHHhHhhHHHHHHhHHHHHHHhhchhh--HhHHHHHHHHHHHHHHHHHHH
Q 002517 366 ALQTNVNRLKESH-ARTMSSLKKTDEDLSSSLLKITDLESSLSA--AGEKFIFMQKLRDYVSVICDF 429 (913)
Q Consensus 366 ~L~~~L~~L~e~h-~~~~~el~k~~e~l~~s~~~i~~lE~~~~~--a~~ky~fyQemr~YV~dL~~c 429 (913)
-|...|..+.... ......+.+++..|+++..-|..+|.++.. ...|-.|...++.|=.+|-.+
T Consensus 7 ~i~~~l~~~~~~~~~~r~~~i~~~e~~l~ea~~~l~qMe~E~~~~p~s~r~~~~~kl~~yr~~l~~l 73 (79)
T PF05008_consen 7 EIKSKLERIKNLSGEQRKSLIREIERDLDEAEELLKQMELEVRSLPPSERNQYKSKLRSYRSELKKL 73 (79)
T ss_dssp HHHHHHHHGGGS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444554321 344566677777888888899988876444 368899999999998887663
No 18
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=32.66 E-value=5.6e+02 Score=29.17 Aligned_cols=69 Identities=12% Similarity=0.298 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhHHHHHHhHHHHHHHhhchhhH-hHHHHHHHHHHHHHHHHHHHHHhh
Q 002517 365 KALQTNVNRLKESHARTMSSLKKTDEDLSSSLLKITDLESSLSAA-GEKFIFMQKLRDYVSVICDFLQDK 433 (913)
Q Consensus 365 k~L~~~L~~L~e~h~~~~~el~k~~e~l~~s~~~i~~lE~~~~~a-~~ky~fyQemr~YV~dL~~cL~EK 433 (913)
+.+.+.|..|+.-...-..+|...+.+.+....+|..+|.+.... .+...|+++...|--.+..+.++.
T Consensus 46 ~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~ 115 (314)
T PF04111_consen 46 EELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEER 115 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666655555555555554444455666665543331 223378888888877777777664
No 19
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=31.80 E-value=5.1e+02 Score=33.28 Aligned_cols=81 Identities=16% Similarity=0.214 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHHhHhhHHHHHHhHHHHHHHhhchhh-HhHHHHHHHHHHHHHHHHHH---HHHhhhhHHHHHHHHH
Q 002517 369 TNVNRLKESHARTMSSLKKTDEDLSSSLLKITDLESSLSA-AGEKFIFMQKLRDYVSVICD---FLQDKAPYIETLEAEM 444 (913)
Q Consensus 369 ~~L~~L~e~h~~~~~el~k~~e~l~~s~~~i~~lE~~~~~-a~~ky~fyQemr~YV~dL~~---cL~EK~p~IeeLE~~~ 444 (913)
..++.|+++.++.+..+...+..|++..+.+..+|..+.+ +.+-|.-+.+|++-...|.+ -|+-|...+.++-.+.
T Consensus 120 ~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk~~eIf~~~~~L~nk~~~lt~~~~q~~tkl~e~~~en~~l 199 (1265)
T KOG0976|consen 120 MEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSAKAHDIFMIGEDLHDKNEELNEFNMEFQTKLAEANREKKAL 199 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3356666777777777887778888888888888887665 45566667777665444433 3555655555554444
Q ss_pred HHHHH
Q 002517 445 QKLNK 449 (913)
Q Consensus 445 ~~Ll~ 449 (913)
..+++
T Consensus 200 e~k~~ 204 (1265)
T KOG0976|consen 200 EEKLE 204 (1265)
T ss_pred HHHHH
Confidence 44443
No 20
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=31.79 E-value=4.5e+02 Score=33.45 Aligned_cols=44 Identities=14% Similarity=0.140 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 002517 411 EKFIFMQKLRDYVSVICDFLQDKAPYIETLEAEMQKLNKERASAILER 458 (913)
Q Consensus 411 ~ky~fyQemr~YV~dL~~cL~EK~p~IeeLE~~~~~Ll~eRa~~l~kR 458 (913)
.+..-.++-+..+..-.+.|.||+-. +.++ |+.+.+|+..++++
T Consensus 579 ~~L~~l~e~~~~l~~~ae~LaeR~e~---a~d~-Qe~L~~R~~~vl~~ 622 (717)
T PF10168_consen 579 KELQELQEERKSLRESAEKLAERYEE---AKDK-QEKLMKRVDRVLQL 622 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH-HHHHHHHHHHHHHH
Confidence 45556666777777788899998444 4433 56666667766554
No 21
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=31.47 E-value=3.9e+02 Score=24.38 Aligned_cols=63 Identities=22% Similarity=0.244 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHhHHHHHHHhhchhhHhHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 002517 360 AESAMKALQTNVNRLKESHARTMSSLKKTDEDLSSSLLKITDLESSLSAAGEKFIFMQKLRDYVSVICDFLQDKAPYIET 439 (913)
Q Consensus 360 ~e~~kk~L~~~L~~L~e~h~~~~~el~k~~e~l~~s~~~i~~lE~~~~~a~~ky~fyQemr~YV~dL~~cL~EK~p~Iee 439 (913)
+..+.+.|++-+..|+-.|..-...|.+++..... +--+.+.+=++.|++.|..|..+|..
T Consensus 15 Ls~vl~~LqDE~~hm~~e~~~L~~~~~~~d~s~~~-------------------~~R~~L~~~l~~lv~~mE~K~dQI~~ 75 (79)
T PF06657_consen 15 LSEVLKALQDEFGHMKMEHQELQDEYKQMDPSLGR-------------------RKRRDLEQELEELVKRMEAKADQIYK 75 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCh-------------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788999999999999888777767666443321 11234555567789999999999987
Q ss_pred HH
Q 002517 440 LE 441 (913)
Q Consensus 440 LE 441 (913)
|-
T Consensus 76 L~ 77 (79)
T PF06657_consen 76 LY 77 (79)
T ss_pred Hh
Confidence 74
No 22
>PF09384 UTP15_C: UTP15 C terminal; InterPro: IPR018983 This entry represents the C-terminal domain of the U3 small nucleolar RNA-associated protein 15 (UTP15). This protein is involved in nucleolar processing of pre-18S ribosomal RNA, and is required for optimal pre-ribosomal RNA transcription by RNA polymerase I together with a subset of U3 proteins required for transcription (t-UTPs). UTP15 is a component of the ribosomal small subunit (SSU) processome, which is a large ribonucleoprotein (RNP) required for processing of precursors to the small subunit RNA, the 18S, of the ribosome [, ]. This domain is found C-terminal to the WD40 repeat (IPR001680 from INTERPRO). UTP15 associates with U3 snoRNA, which is ubiquitous in eukaryotes and is required for nucleolar processing of pre-18S ribosomal RNA []. ; GO: 0006364 rRNA processing, 0005730 nucleolus
Probab=30.13 E-value=2e+02 Score=29.02 Aligned_cols=57 Identities=21% Similarity=0.209 Sum_probs=35.8
Q ss_pred HHHhHhhHHHHhhhhcccCCHHHHHHHHHHHHHHHhhcC---CCcHHHHHHHHHHHHHHHHHh
Q 002517 690 EKVALPILHHDIAYCWDMLSTRETKNAVSATILVMAYVP---TSSEALKDLLVAIHTCLAEAV 749 (913)
Q Consensus 690 EKvVlPkLt~~v~~~WDPlSt~QT~~Lv~l~~~v~~~~~---~~sk~~q~Ll~ai~~Rlk~aV 749 (913)
|+.+.|.|.-++++++||-.+. -++.+++.|++-+. ..|..+..+|..+..++.+-|
T Consensus 73 e~~L~piL~Fl~k~i~~pr~~~---~l~~v~~~ildiY~~~~~~s~~v~~~~~~L~~~v~~E~ 132 (148)
T PF09384_consen 73 EESLEPILKFLIKNITDPRYTR---ILVDVANIILDIYSPVIGQSPEVDKLFQKLQRKVQEEL 132 (148)
T ss_pred HHHHHHHHHHHHHhCCCcccHH---HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 5678899988889999986554 55555555554332 234455556666665555543
No 23
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=29.40 E-value=7.2e+02 Score=26.47 Aligned_cols=97 Identities=11% Similarity=0.146 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHhHHHHHHHhhchhhHhHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 002517 360 AESAMKALQTNVNRLKESHARTMSSLKKTDEDLSSSLLKITDLESSLSAAGEKFIFMQKLRDYVSVICDFLQDKAPYIET 439 (913)
Q Consensus 360 ~e~~kk~L~~~L~~L~e~h~~~~~el~k~~e~l~~s~~~i~~lE~~~~~a~~ky~fyQemr~YV~dL~~cL~EK~p~Iee 439 (913)
++.| +.|++.+..|+..-......+..+.+....-...|+.++.+......+..+|..-+.=..++-.-+..---.|..
T Consensus 26 L~lI-ksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~ 104 (201)
T PF13851_consen 26 LELI-KSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKD 104 (201)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444 678888888887666555555554444444445556666565566667778877777666666666555556777
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 002517 440 LEAEMQKLNKERASAILER 458 (913)
Q Consensus 440 LE~~~~~Ll~eRa~~l~kR 458 (913)
|+.... .+.+|...+.+-
T Consensus 105 Lk~e~e-vL~qr~~kle~E 122 (201)
T PF13851_consen 105 LKWEHE-VLEQRFEKLEQE 122 (201)
T ss_pred HHHHHH-HHHHHHHHHHHH
Confidence 766644 444445554444
No 24
>PF04921 XAP5: XAP5, circadian clock regulator; InterPro: IPR007005 These proteins are found in a wide range of eukaryotes. Their function is uncertain though they are nuclear proteins, possibly with DNA-binding activity.; GO: 0005634 nucleus
Probab=28.93 E-value=36 Score=37.26 Aligned_cols=14 Identities=64% Similarity=0.878 Sum_probs=11.0
Q ss_pred cccccccccccccC
Q 002517 44 KLLSFADDEEEKSE 57 (913)
Q Consensus 44 ~~lsf~~~e~~~~~ 57 (913)
+.|||++|||++++
T Consensus 9 ~kLSF~~deeeee~ 22 (239)
T PF04921_consen 9 SKLSFGDDEEEEEE 22 (239)
T ss_pred ccCCcCcccccccc
Confidence 48999999877553
No 25
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=28.49 E-value=7.3e+02 Score=30.96 Aligned_cols=18 Identities=28% Similarity=0.525 Sum_probs=7.5
Q ss_pred HHHHHHHHhhhhhhHHHH
Q 002517 453 SAILERRAADNDDEMTEV 470 (913)
Q Consensus 453 ~~l~kRR~~D~~De~~~~ 470 (913)
..+.++....++.....+
T Consensus 497 ~~l~~~~~~~le~~~~~~ 514 (650)
T TIGR03185 497 EKLLERKLQQLEEEITKS 514 (650)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444433
No 26
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=28.23 E-value=5.5e+02 Score=29.77 Aligned_cols=89 Identities=12% Similarity=0.125 Sum_probs=51.8
Q ss_pred ccccccHHHHHHHH---HHHHHHHHHHHHHHHHHHHhHhhHHHHHHhHHHHHHHhhchhhHhHHHHHHHHHHHHHHHHHH
Q 002517 352 DTMSIAQKAESAMK---ALQTNVNRLKESHARTMSSLKKTDEDLSSSLLKITDLESSLSAAGEKFIFMQKLRDYVSVICD 428 (913)
Q Consensus 352 ~~~~v~qq~e~~kk---~L~~~L~~L~e~h~~~~~el~k~~e~l~~s~~~i~~lE~~~~~a~~ky~fyQemr~YV~dL~~ 428 (913)
.+.++..+.++|.. -+-+.+..|++....-..+.+++.+++..++..++++=.. |-.+=. .....++-
T Consensus 117 ~L~~~~~p~e~i~el~d~~l~~~~~l~~~~~~L~~enerL~~e~~~~~~qlE~~v~~------K~~~E~---~L~~KF~~ 187 (342)
T PF06632_consen 117 KLKQVDNPAEVIRELFDWCLDANSRLQAENEHLQKENERLESEANKLLKQLEKFVNA------KEEHEE---DLYAKFVL 187 (342)
T ss_dssp E-EE-S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHH---HHHHHHHH
T ss_pred ECCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHH---HHHHHHHH
Confidence 34445444554433 4455666677666666667777777776655555554322 222222 23345677
Q ss_pred HHHhhhhHHHHHHHHHHHHHH
Q 002517 429 FLQDKAPYIETLEAEMQKLNK 449 (913)
Q Consensus 429 cL~EK~p~IeeLE~~~~~Ll~ 449 (913)
-||||-..|-+|...+..+-.
T Consensus 188 vLNeKK~KIR~lq~~L~~~~~ 208 (342)
T PF06632_consen 188 VLNEKKAKIRELQRLLASAKE 208 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHhhc
Confidence 899999999999877665544
No 27
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=27.82 E-value=2.9e+02 Score=24.37 Aligned_cols=61 Identities=11% Similarity=0.211 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhHHHHHHhHHHHHHHhhchhhHhHHHHHHHHHHHHHHHHHHH
Q 002517 367 LQTNVNRLKESHARTMSSLKKTDEDLSSSLLKITDLESSLSAAGEKFIFMQKLRDYVSVICDF 429 (913)
Q Consensus 367 L~~~L~~L~e~h~~~~~el~k~~e~l~~s~~~i~~lE~~~~~a~~ky~fyQemr~YV~dL~~c 429 (913)
++++|.+++.....|.......+.........|.++..++......-+|+-. .-+.-++.+
T Consensus 4 i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n~kW~~r--~iiGaiI~~ 64 (71)
T PF10779_consen 4 IKEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKSNTKWIWR--TIIGAIITA 64 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence 4555666665555555555555555555566777787788888888888754 444444443
No 28
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.59 E-value=5.2e+02 Score=31.07 Aligned_cols=73 Identities=16% Similarity=0.259 Sum_probs=48.2
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHH------HHHHHHhHhhHHHHHHhHHHHHHHhh----------chhhHhHHHHHHH
Q 002517 354 MSIAQKAESAMKALQTNVNRLKESH------ARTMSSLKKTDEDLSSSLLKITDLES----------SLSAAGEKFIFMQ 417 (913)
Q Consensus 354 ~~v~qq~e~~kk~L~~~L~~L~e~h------~~~~~el~k~~e~l~~s~~~i~~lE~----------~~~~a~~ky~fyQ 417 (913)
.-.+||.+..+..|.+..-.|++-. ....+++.+++++|.+.-..|..-|. .++.+..+|.|-|
T Consensus 310 ~~ltqqwed~R~pll~kkl~Lr~~l~~~e~e~~e~~~IqeleqdL~a~~eei~~~eel~~~Lrsele~lp~dv~rk~ytq 389 (521)
T KOG1937|consen 310 EELTQQWEDTRQPLLQKKLQLREELKNLETEDEEIRRIQELEQDLEAVDEEIESNEELAEKLRSELEKLPDDVQRKVYTQ 389 (521)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCchhHHHHHHH
Confidence 3456788888777777766666542 22357777888888877777763222 1333345899999
Q ss_pred HHHHHHHHH
Q 002517 418 KLRDYVSVI 426 (913)
Q Consensus 418 emr~YV~dL 426 (913)
.++.++.|+
T Consensus 390 rikEi~gni 398 (521)
T KOG1937|consen 390 RIKEIDGNI 398 (521)
T ss_pred HHHHHHhHH
Confidence 988888764
No 29
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=27.47 E-value=9.2e+02 Score=28.00 Aligned_cols=43 Identities=28% Similarity=0.428 Sum_probs=27.5
Q ss_pred HhHHHHHHHHHHHHHH-HHH---HHHHhhhhHHHHHHHHHHHHHHHH
Q 002517 409 AGEKFIFMQKLRDYVS-VIC---DFLQDKAPYIETLEAEMQKLNKER 451 (913)
Q Consensus 409 a~~ky~fyQemr~YV~-dL~---~cL~EK~p~IeeLE~~~~~Ll~eR 451 (913)
+++-..|-|+|..|-. .++ +.|+-+-.+|-+||.+++.|+.+-
T Consensus 171 LaE~layqq~L~~eyQatf~eq~~ml~kRQ~yI~~LEsKVqDLm~Ei 217 (401)
T PF06785_consen 171 LAEALAYQQELNDEYQATFVEQHSMLDKRQAYIGKLESKVQDLMYEI 217 (401)
T ss_pred HHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666655432 233 377777788888888888877664
No 30
>KOG2894 consensus Uncharacterized conserved protein XAP-5 [Function unknown]
Probab=27.29 E-value=35 Score=37.90 Aligned_cols=16 Identities=44% Similarity=0.451 Sum_probs=11.1
Q ss_pred ccccccccccccccCC
Q 002517 43 KKLLSFADDEEEKSEI 58 (913)
Q Consensus 43 k~~lsf~~~e~~~~~~ 58 (913)
++.||||.|+|++.++
T Consensus 116 ~s~LSFa~DdEededD 131 (331)
T KOG2894|consen 116 ISRLSFALDDEEDEDD 131 (331)
T ss_pred cccccccccccccccc
Confidence 3489999997554444
No 31
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=27.01 E-value=95 Score=33.94 Aligned_cols=43 Identities=14% Similarity=0.221 Sum_probs=31.2
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH
Q 002517 428 DFLQDKAPYIETLEAEMQKLNKERASAILERRAADNDDEMTEVEA 472 (913)
Q Consensus 428 ~cL~EK~p~IeeLE~~~~~Ll~eRa~~l~kRR~~D~~De~~~~~~ 472 (913)
.+|.+|.-+|++||.++..|++. +..|+++|+ ++-.-..+|..
T Consensus 22 ~wF~~k~~~ie~LE~qLk~L~k~-~~~lv~~r~-eLa~~~~eFa~ 64 (234)
T cd07665 22 VWFEEKLQEVECEEQRLRKLHAV-VETLVNHRK-ELALNTALFAK 64 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH-HHHHHHHHHHH
Confidence 46777888889999999999876 777777776 44455555544
No 32
>KOG0885 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=26.29 E-value=26 Score=40.41 Aligned_cols=30 Identities=40% Similarity=0.555 Sum_probs=19.3
Q ss_pred ccccccccccccCCCCCCCCCCCCCCCCCCCCCCCccc
Q 002517 45 LLSFADDEEEKSEIPTSNRDRTRPSSRLSKPSSSHKIT 82 (913)
Q Consensus 45 ~lsf~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (913)
||||||+-|+++ ++-...+++ ++.++|.+|
T Consensus 203 lLsfgdE~E~de-~e~~~~~k~-------kskSshd~~ 232 (439)
T KOG0885|consen 203 LLSFGDEAEEDE-EEVAVVKKR-------KSKSSHDVT 232 (439)
T ss_pred eeccccccccch-hhHhhhhhh-------hhccccccc
Confidence 999998854433 333444443 667788888
No 33
>PHA02562 46 endonuclease subunit; Provisional
Probab=24.80 E-value=1.3e+03 Score=27.80 Aligned_cols=26 Identities=8% Similarity=0.077 Sum_probs=12.1
Q ss_pred HHHhHHHHHHHhhchhhHhHHHHHHH
Q 002517 392 LSSSLLKITDLESSLSAAGEKFIFMQ 417 (913)
Q Consensus 392 l~~s~~~i~~lE~~~~~a~~ky~fyQ 417 (913)
|......+..++..+.....-+.||+
T Consensus 257 L~~l~~~~~~~~~~l~~~~~~~~~~~ 282 (562)
T PHA02562 257 LNKLNTAAAKIKSKIEQFQKVIKMYE 282 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33344444444444444444455553
No 34
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=24.43 E-value=1.9e+03 Score=29.69 Aligned_cols=80 Identities=11% Similarity=0.189 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHhh-hccccCCchhhhhhcchHHHHHHHHHhHHHHHHhhhh-ccccccchHHHHHhhHhHHHhhhhhhc
Q 002517 737 LLVAIHTCLAEAVA-NIAVPTWSSLAMSAVPNAARIAAYRFGVSVRLMRNIC-LWKEVFALPILEKLALDELLCRKVLPH 814 (913)
Q Consensus 737 Ll~ai~~Rlk~aVe-dvfIPl~pk~v~~~~p~~s~f~~rqFwsavKLL~Nil-~W~~~l~~~~L~~L~l~~LLnr~lL~~ 814 (913)
=+..+..||...|. +.|+..+......-. +++-.-.||.-+|.|.-.. .|..- ..
T Consensus 1007 ~I~~~s~~l~~~v~~~~~~~~i~~i~v~i~---s~i~~l~~w~~Lk~F~~~~~~w~~~--------------------~~ 1063 (1201)
T PF12128_consen 1007 RIKSQSRRLSREVSEDLFFEAISDIEVRIR---SSIDELEFWKPLKQFSDEYELWRSS--------------------DG 1063 (1201)
T ss_pred HHHHHHHHHHHHHhhhccccccceeEEEEE---echhhhccHHHHHHHHHHHHHHhcc--------------------cC
Confidence 46778889988888 678887765422222 2344457899888776522 44210 11
Q ss_pred ccccCCCchhHHHHHHHHHhccccccc
Q 002517 815 VRSIASNVHDAISRTERIVASLSGVWA 841 (913)
Q Consensus 815 L~~~~~~~~d~i~k~~~Iva~lP~~Wf 841 (913)
..-+ |..+.+..+..++.+||..+|
T Consensus 1064 ~~~l--P~e~~~~~l~~l~~~l~~~~~ 1088 (1201)
T PF12128_consen 1064 SREL--PSEEYVNALRELLDILPSGGF 1088 (1201)
T ss_pred cccC--CCHHHHHHHHHHHHHHhhccc
Confidence 1112 235688888888888888885
No 35
>PF06825 HSBP1: Heat shock factor binding protein 1; InterPro: IPR009643 Heat shock factor binding protein 1 (HSBP1) appears to be a negative regulator of the heat shock response [].; PDB: 3CI9_A.
Probab=24.37 E-value=76 Score=27.11 Aligned_cols=20 Identities=30% Similarity=0.376 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHhhhhH
Q 002517 417 QKLRDYVSVICDFLQDKAPY 436 (913)
Q Consensus 417 Qemr~YV~dL~~cL~EK~p~ 436 (913)
++|..||++|+.=|+.|+-.
T Consensus 2 ~elt~~v~~lL~qmq~kFq~ 21 (54)
T PF06825_consen 2 QELTAFVQNLLQQMQDKFQT 21 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 57788888888888888544
No 36
>PF07842 GCFC: GC-rich sequence DNA-binding factor-like protein; InterPro: IPR022783 Sequences in this group are similar to a region of a human GC-rich sequence DNA-binding factor homologue (Q9Y5B6 from SWISSPROT). This is thought to be a protein involved in transcriptional regulation due to partial homologies to a transcription repressor and histone-interacting protein []. This entry also contains tuftelin interacting protein 11 which has been identified as both a nuclear and cytoplasmic protein, and has been implicated in the secretory pathway. Sip1, a septin interacting protein [] is also a member of this family. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=23.28 E-value=3.4e+02 Score=29.87 Aligned_cols=126 Identities=14% Similarity=0.199 Sum_probs=70.7
Q ss_pred hhChhHHHHHHhhcchhhhhhhHHHHHhc-ccCCCCCCCCCCC-------ChhHHHHHhcCCCCCCCCCCCCCCCcCchH
Q 002517 615 RDYSSSYRDAYMSLSTPAIMSPYVRLELL-KWDPLHEDADFSE-------MKWHNLLFNYGLPKDGEDFAHDDADANLVP 686 (913)
Q Consensus 615 ~~~p~sY~dAyisLcLPkl~~P~VRlELl-~WnPL~~~~dle~-------m~Wf~~L~~yg~~~~~~~~~~dd~D~~llp 686 (913)
+.....|.+.|..+-|..++--++---+- .+. .-..|+. |..++.+..+....... .......-..
T Consensus 9 e~l~~~~~~ey~~~~l~~~~~~~~~P~lr~~l~---~W~PL~~p~~~~~~l~~~~~lL~~~~~~~~~---~~~~~~~~ye 82 (276)
T PF07842_consen 9 EELKEKFPEEYRDAYLSLLAPALIAPLLRLELQ---NWDPLEDPSYGVDELKRWRSLLENDQDSSSS---SSNRNMTPYE 82 (276)
T ss_pred HHHHHHCHHHHHHcChHHHHHHHHHHHHHHHHh---ccCCccCcchHHHHHHHHHHHHhhccccccc---ccccccCcHH
Confidence 34556788888877777766554322111 011 1123432 33444444433221111 1222234578
Q ss_pred HHHHHHhHhhHHHHhhhhcccCCHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHH-HHHHHHHHhhh
Q 002517 687 TLVEKVALPILHHDIAYCWDMLSTRETKNAVSATILVMAYVPTSSEALKDLLVA-IHTCLAEAVAN 751 (913)
Q Consensus 687 ~vIEKvVlPkLt~~v~~~WDPlSt~QT~~Lv~l~~~v~~~~~~~sk~~q~Ll~a-i~~Rlk~aVed 751 (913)
.|+-..++|++...+..-|||.......+++..-..+ +|. -.+..|++. |+-||+.+|+.
T Consensus 83 ~l~w~~~lp~~~~~~~~~w~~~~~~~~~~ll~~W~~~---Lp~--~~~~~ileqlVlPKL~~~V~~ 143 (276)
T PF07842_consen 83 SLIWEIWLPKVRSAIANEWDPRDPDPDLSLLEAWSPL---LPP--WILDNILEQLVLPKLQAAVEE 143 (276)
T ss_pred HhhHHHHHHHHHHhhhcccCCCCCchHHHHHHHHHHh---CCH--HHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999997777899999555444444433322 332 234567655 56889999984
No 37
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=23.26 E-value=1.4e+03 Score=28.14 Aligned_cols=104 Identities=13% Similarity=0.243 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhHHHHHHhHHHHHHHhhchhhHhH-HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 002517 365 KALQTNVNRLKESHARTMSSLKKTDEDLSSSLLKITDLESSLSAAGE-KFIFMQKLRDYVSVICDFLQDKAPYIETLEAE 443 (913)
Q Consensus 365 k~L~~~L~~L~e~h~~~~~el~k~~e~l~~s~~~i~~lE~~~~~a~~-ky~fyQemr~YV~dL~~cL~EK~p~IeeLE~~ 443 (913)
+.+.+.|..|+..-......+.++...|...+..|++. .+|...+ =..+|......|..|.++|+++--.++.+...
T Consensus 396 ~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~lek~--nLPGlp~~y~~~~~~~~~~i~~l~~~L~~~pinm~~v~~~ 473 (560)
T PF06160_consen 396 EEINESLQSLRKDEKEAREKLQKLKQKLREIKRRLEKS--NLPGLPEDYLDYFFDVSDEIEELSDELNQVPINMDEVNKQ 473 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHH
Confidence 34555555555555555566666666666555555442 4555433 34689999999999999999988888877766
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHH
Q 002517 444 MQKLNKERASAILERRAADNDDEMTEVEA 472 (913)
Q Consensus 444 ~~~Ll~eRa~~l~kRR~~D~~De~~~~~~ 472 (913)
+...-.. ..-+.....++-+.+...+.
T Consensus 474 l~~a~~~--v~~L~~~t~~li~~A~L~E~ 500 (560)
T PF06160_consen 474 LEEAEDD--VETLEEKTEELIDNATLAEQ 500 (560)
T ss_pred HHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 6544332 22233445555555555443
No 38
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=23.14 E-value=8.3e+02 Score=25.09 Aligned_cols=69 Identities=10% Similarity=0.211 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHhHhhHHHHHHhHHHHHHHhhchhhHhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 002517 370 NVNRLKESHARTMSSLKKTDEDLSSSLLKITDLESSLSAAGEKFIFMQKLRDYVSVICDFLQDKAPYIETLE 441 (913)
Q Consensus 370 ~L~~L~e~h~~~~~el~k~~e~l~~s~~~i~~lE~~~~~a~~ky~fyQemr~YV~dL~~cL~EK~p~IeeLE 441 (913)
.+..++.....-..++...++.+......+..++...... -.+++....-+.++-.-..+....+.+|.
T Consensus 82 e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 82 ELSELQQQLQQLQEELDQLQERIQELESELEKLKEDLQEL---RELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444433333444445444444444555444332221 14444555555555444444444444444
No 39
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=22.86 E-value=7.3e+02 Score=29.87 Aligned_cols=38 Identities=18% Similarity=0.242 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 002517 411 EKFIFMQKLRDYVSVICDFLQDKAPYIETLEAEMQKLN 448 (913)
Q Consensus 411 ~ky~fyQemr~YV~dL~~cL~EK~p~IeeLE~~~~~Ll 448 (913)
.+-.|-+.++.--+.+-+.+..|--.|++|++++..|+
T Consensus 411 nq~vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQlrDlm 448 (493)
T KOG0804|consen 411 NQDVWRGKLKELEEREKEALGSKDEKITDLQEQLRDLM 448 (493)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Confidence 34455555555555555555555556666666665554
No 40
>PF15387 DUF4611: Domain of unknown function (DUF4611)
Probab=22.48 E-value=68 Score=30.27 Aligned_cols=13 Identities=38% Similarity=0.762 Sum_probs=7.2
Q ss_pred cCCCCCCCCCCCC
Q 002517 13 ADDDEDNNDDNTP 25 (913)
Q Consensus 13 ~~~~~~~~~~~~~ 25 (913)
|||+||++|+++.
T Consensus 68 g~deddaede~n~ 80 (96)
T PF15387_consen 68 GDDEDDAEDENNI 80 (96)
T ss_pred CccccccccccCc
Confidence 4555555566655
No 41
>PF05149 Flagellar_rod: Paraflagellar rod protein; InterPro: IPR007824 This family consists of several eukaryotic paraflagellar rod component proteins. The eukaryotic flagellum represents one of the most complex macromolecular structures found in any organism and contains more than 250 proteins []. In addition to its locomotive role, the flagellum is probably involved in nutrient uptake since receptors for host low-density lipoproteins are localised on the flagellar membrane as well as on the flagellar pocket membrane [].; GO: 0005516 calmodulin binding, 0009434 microtubule-based flagellum
Probab=21.50 E-value=1.2e+03 Score=26.65 Aligned_cols=37 Identities=24% Similarity=0.282 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 002517 419 LRDYVSVICDFLQDKAPYIETLEAEMQKLNKERASAI 455 (913)
Q Consensus 419 mr~YV~dL~~cL~EK~p~IeeLE~~~~~Ll~eRa~~l 455 (913)
+..++.+..+-=.+=+-.|.+|+..+..|-.+|...+
T Consensus 50 ~~~~l~~n~e~q~~lw~~i~el~~~L~~l~~er~~~v 86 (289)
T PF05149_consen 50 SEKFLQKNEEQQQELWREIQELERELQDLAEERREEV 86 (289)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444433222333346666666666666654433
No 42
>PF06060 Mesothelin: Pre-pro-megakaryocyte potentiating factor precursor (Mesothelin); InterPro: IPR010335 This family consists of several mammalian pre-pro-megakaryocyte potentiating factor precursor (MPF) or mesothelin proteins. Mesothelin is a glycosylphosphatidylinositol-linked glycoprotein highly expressed in mesothelial cells, mesotheliomas, and ovarian cancer, but the biological function of the protein is not known [,].
Probab=21.33 E-value=3.4e+02 Score=33.88 Aligned_cols=74 Identities=19% Similarity=0.255 Sum_probs=46.4
Q ss_pred HHHHhhhhcccc----ccchHHHHHhhHhHHH-----------hhhhhhcccccCC-CchhHHHHHHHHHh------ccc
Q 002517 780 VRLMRNICLWKE----VFALPILEKLALDELL-----------CRKVLPHVRSIAS-NVHDAISRTERIVA------SLS 837 (913)
Q Consensus 780 vKLL~Nil~W~~----~l~~~~L~~L~l~~LL-----------nr~lL~~L~~~~~-~~~d~i~k~~~Iva------~lP 837 (913)
.+|+.|.+..=| .++++.|.-|| .|+ ..+||++|.+|+. -.++..+..+.+.. .-|
T Consensus 162 ~~Ll~~Al~CLGi~gs~Ls~~dv~iLG--~LvCdL~~~~I~~Sdp~vL~~L~~Cp~~Lt~~Q~~Ai~~lL~sG~t~yGpP 239 (625)
T PF06060_consen 162 QALLRNALACLGINGSSLSEEDVQILG--NLVCDLDGSYIANSDPSVLENLQRCPSRLTQDQQAAINTLLQSGNTPYGPP 239 (625)
T ss_pred HHHHHHHHHhcCCCCCCCCHHHHHHhc--CeeecCChHHhhcCCHHHHHHHhcCCCcCCHHHHHHHHHHHhcCCCCCCCC
Confidence 367777774332 46677776655 222 2489999999973 23666777777775 348
Q ss_pred ccccCCCCCCccccccchHHHHH
Q 002517 838 GVWAGPSVTGSCCHKLQPLVDFM 860 (913)
Q Consensus 838 ~~Wf~~~~~~~~~~~L~~f~~~l 860 (913)
..|-. +|+..|.+|.-|+
T Consensus 240 s~Ws~-----sTL~~Lg~L~~~l 257 (625)
T PF06060_consen 240 SSWSL-----STLQALGPLALYL 257 (625)
T ss_pred CcCCH-----HHHHHhcchHhhc
Confidence 99953 3456666655443
No 43
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=21.30 E-value=8.6e+02 Score=28.24 Aligned_cols=15 Identities=47% Similarity=0.466 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHH
Q 002517 439 TLEAEMQKLNKERAS 453 (913)
Q Consensus 439 eLE~~~~~Ll~eRa~ 453 (913)
|-|++.+.|.++=++
T Consensus 159 Ekeeesq~LnrELaE 173 (401)
T PF06785_consen 159 EKEEESQTLNRELAE 173 (401)
T ss_pred HhHHHHHHHHHHHHH
Confidence 334444444444333
No 44
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=20.80 E-value=1.4e+03 Score=26.73 Aligned_cols=10 Identities=30% Similarity=0.713 Sum_probs=5.3
Q ss_pred ccccccccch
Q 002517 514 VKLDEFGRDM 523 (913)
Q Consensus 514 ~~lDEfGrd~ 523 (913)
..+|+|=|.+
T Consensus 331 i~l~~yLr~V 340 (365)
T KOG2391|consen 331 IDLDQYLRHV 340 (365)
T ss_pred eeHHHHHHHH
Confidence 4566665543
No 45
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=20.14 E-value=1.2e+03 Score=25.76 Aligned_cols=53 Identities=21% Similarity=0.214 Sum_probs=39.6
Q ss_pred HHHhHHHHHHHhhchhhHhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 002517 392 LSSSLLKITDLESSLSAAGEKFIFMQKLRDYVSVICDFLQDKAPYIETLEAEMQKL 447 (913)
Q Consensus 392 l~~s~~~i~~lE~~~~~a~~ky~fyQemr~YV~dL~~cL~EK~p~IeeLE~~~~~L 447 (913)
...+...+..||..+..+=.|-+.|=+|+.-+...++-...| |+.||..+..-
T Consensus 151 ~~~ae~~v~~Lek~lkr~I~KSrPYfe~K~~~~~~l~~~k~~---v~~Le~~v~~a 203 (239)
T PF05276_consen 151 YNEAEQRVQQLEKKLKRAIKKSRPYFELKAKFNQQLEEQKEK---VEELEAKVKQA 203 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 334456777888888888889999999999988877776655 77777666443
No 46
>PF11601 Shal-type: Shal-type voltage-gated potassium channels ; InterPro: IPR021645 This family of proteins represents Shal-type voltage-gated potassium channels which interact with Kv channel-interacting proteins to modulate cell surface expression and function of Kv4 channels. The interaction of the Shal-type protein Kv4.2 and the Kv interacting protein KChiP1 forms a structure which is like the structure between calmodulin and its target peptides when they interact. Interactions of an N-terminal alpha helix in Kv4.2 and a C-terminal alpha helix in KChIP1 are essential for the modulation of Kv4.2 by KChIPs []. ; PDB: 2NZ0_B 2I2R_B 1S6C_B.
Probab=20.00 E-value=86 Score=23.25 Aligned_cols=19 Identities=32% Similarity=0.667 Sum_probs=16.7
Q ss_pred hhhhhHHHHHhcccCCCCC
Q 002517 632 AIMSPYVRLELLKWDPLHE 650 (913)
Q Consensus 632 kl~~P~VRlELl~WnPL~~ 650 (913)
..|-||+|.--|+|-|+..
T Consensus 4 aaWlPfaraaAIGW~p~a~ 22 (28)
T PF11601_consen 4 AAWLPFARAAAIGWLPLAQ 22 (28)
T ss_dssp HTTHHHHHHHHTTTSSTTS
T ss_pred hhhhhHHHHHhhcceeecc
Confidence 4588999999999999974
Done!