Query 002517
Match_columns 913
No_of_seqs 214 out of 248
Neff 5.5
Searched_HMMs 29240
Date Tue Mar 26 17:09:39 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002517.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1234-1238//hhsearch_pdb/002517hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tkl_B LIDA protein, substrate 1.0 1 1 15.3 0.5 65 367-435 16-88 (267)
2 3tnx_A Papain; hydrolase, cyto 1.0 1 1 15.2 0.4 24 599-622 55-78 (363)
3 1nxh_A MTH396 protein; hypothe 1.0 1 1 13.7 0.2 29 600-628 49-77 (126)
4 3q0x_A Centriole protein; cent 1.0 1 1 13.3 7.5 64 351-419 155-218 (228)
5 1k1f_A Breakpoint cluster regi 1.0 1 1 13.3 4.2 29 385-415 28-56 (72)
6 4a5z_A MITD1, MIT domain-conta 1.0 1 1 13.0 2.3 37 690-726 24-64 (163)
7 3ibv_A Exportin-T; karyopherin 1.0 1 1 12.8 12.8 64 823-894 855-922 (980)
8 2lw1_A ABC transporter ATP-bin 1.0 1 1 12.7 5.3 62 383-448 22-83 (89)
9 3anw_B GINS23, putative unchar 1.0 1 1 12.5 6.2 44 415-458 81-135 (171)
10 3f75_P Toxopain-2, cathepsin L 1.0 1 1 12.2 -0.1 23 602-624 17-39 (106)
No 1
>3tkl_B LIDA protein, substrate of the DOT/ICM system; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Legionella pneumophila}
Probab=1.00 E-value=1 Score=15.28 Aligned_cols=65 Identities=20% Similarity=0.271 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHH
Q ss_conf 99999998999999898767439989974999899962014676787999--------9999999999999973334
Q 002517 367 LQTNVNRLKESHARTMSSLKKTDEDLSSSLLKITDLESSLSAAGEKFIFM--------QKLRDYVSVICDFLQDKAP 435 (913)
Q Consensus 367 L~~rL~~L~e~h~~~~~el~k~~e~l~~s~~~i~~lE~~~~~a~~ky~Fy--------Qelr~YV~dL~~cL~EK~p 435 (913)
|+..|.+....-++.+..+.+- +.|+ ..|..||.+.....++|.-| ++...|-++=.+-+||++.
T Consensus 16 ~q~~~~~ye~ai~~~qen~~k~-e~L~---~rl~kLE~qq~~lt~KY~~Ye~sL~eF~~~sd~yeal~~e~ine~i~ 88 (267)
T 3tkl_B 16 IQKMLDEYEQAIKRAQENIKKG-EELE---KKLDKLERQGKDLEDKYKTYEENLEGFEKLLTDSEELSLSEINEKMK 88 (267)
T ss_dssp ---------------------------------------------------------------CCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCHHHHHHHHH
T ss_conf 9999999999999999988610-8899---99999998777889988789987999998420454249998999999
No 2
>3tnx_A Papain; hydrolase, cytoplasm for recombinant expression; 2.62A {Carica papaya}
Probab=1.00 E-value=1 Score=15.21 Aligned_cols=24 Identities=17% Similarity=0.415 Sum_probs=11.1
Q ss_pred HCCCHHHHHHHHHHHHHHCHHHHH
Q ss_conf 215948899999999943806799
Q 002517 599 EYSQLSVVKERFEKWKRDYSSSYR 622 (913)
Q Consensus 599 eF~~i~~Il~rFe~WR~~~pdsY~ 622 (913)
|+.+...+...|+.|+.+|...|.
T Consensus 55 dl~s~~~~~~lf~~f~~~~~K~Y~ 78 (363)
T 3tnx_A 55 DLTSTERLIQLFESWMLKHNKIYK 78 (363)
T ss_dssp CSSCHHHHHHHHHHHHHHTTCCCS
T ss_pred HHCCHHHHHHHHHHHHHHCCCCCC
T ss_conf 630879999999999998199689
No 3
>1nxh_A MTH396 protein; hypothetical protein, disulfide bonds, homodimer, structural genomics, PSI, protein structure initiative; 2.80A {Methanothermobacterthermautotrophicus} SCOP: a.200.1.1
Probab=1.00 E-value=1 Score=13.67 Aligned_cols=29 Identities=21% Similarity=0.241 Sum_probs=10.3
Q ss_pred CCCHHHHHHHHHHHHHHCHHHHHHHHHHC
Q ss_conf 15948899999999943806799987525
Q 002517 600 YSQLSVVKERFEKWKRDYSSSYRDAYMSL 628 (913)
Q Consensus 600 F~~i~~Il~rFe~WR~~~pdsY~dAYisL 628 (913)
++++..+-.+|+.||-.+-..--++-.+|
T Consensus 49 mssLe~lha~~E~Ak~~cl~~kvd~DLgL 77 (126)
T 1nxh_A 49 MSSLEALHPRFESARPRCIREKLHSDLQL 77 (126)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_conf 66698701789998541678886055230
No 4
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=1.00 E-value=1 Score=13.25 Aligned_cols=64 Identities=13% Similarity=0.065 Sum_probs=43.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
Q ss_conf 765521078999999999999998999999898767439989974999899962014676787999999
Q 002517 351 LDTMSIAQKAESAMKALQTNVNRLKESHARTMSSLKKTDEDLSSSLLKITDLESSLSAAGEKFIFMQKL 419 (913)
Q Consensus 351 ~~~~~v~qq~e~~kk~L~~rL~~L~e~h~~~~~el~k~~e~l~~s~~~i~~lE~~~~~a~~ky~FyQel 419 (913)
+.+.+.+ -+.+++.|..|+..+++--..-.+.+.++.++..+-.+.++... ..+++-..||...
T Consensus 155 L~f~~as--de~Ik~yLa~R~~~lK~kl~~l~~~L~~~~~e~~s~~~~~~~~~---~~~~~~~~~~~~~ 218 (228)
T 3q0x_A 155 LAFRPGN--DSVVKQFLAFRLSEVKGTCHDLSDDLSRTRDDRDSMVAQLAQCR---QQLAQLREQYDKH 218 (228)
T ss_dssp EEEEECC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred EEEECCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_conf 9865299--99999999999999999999999999999999998999999999---9999999987654
No 5
>1k1f_A Breakpoint cluster region protein; oligomerization, coiled coil, BCR-ABL kinase, transferase; 2.20A {Homo sapiens} SCOP: a.147.1.1
Probab=1.00 E-value=1 Score=13.25 Aligned_cols=29 Identities=21% Similarity=0.416 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
Q ss_conf 6743998997499989996201467678799
Q 002517 385 LKKTDEDLSSSLLKITDLESSLSAAGEKFIF 415 (913)
Q Consensus 385 l~k~~e~l~~s~~~i~~lE~~~~~a~~ky~F 415 (913)
+..+++.|+.++..|..||.+++. ++|+.
T Consensus 28 vgdiEqeLe~Ck~sIrrLE~evn~--ErFrm 56 (72)
T 1k1f_A 28 VGDIEQELERAKASIRRLEQEVNQ--ERFRM 56 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHH
T ss_conf 627999999999999999999869--89999
No 6
>4a5z_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; 2.30A {Homo sapiens}
Probab=1.00 E-value=1 Score=12.98 Aligned_cols=37 Identities=14% Similarity=0.061 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHH--CCCCC--HHHHHHHHHHHHHHHHH
Q ss_conf 997676688876331--36689--99999999999999831
Q 002517 690 EKVALPILHHDIAYC--WDMLS--TRETKNAVSATILVMAY 726 (913)
Q Consensus 690 EKvVlPkLt~~ie~~--WDPlS--t~QT~~Lv~l~~~v~~~ 726 (913)
+++.-|.|..-+..+ =|||= ..|-.|++.||+.+...
T Consensus 24 e~LFg~YL~~~~~~I~IeDPYIR~~hQi~NfvrF~Ellvk~ 64 (163)
T 4a5z_A 24 ESLFREYLNETVTEVWIEDPYIRHTHQLYNFLRFCEMLIKR 64 (163)
T ss_dssp HHHHGGGCCTTCCEEEEECSCCCSHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHC
T ss_conf 99899997488449999787325078999999999999855
No 7
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=1.00 E-value=1 Score=12.78 Aligned_cols=64 Identities=13% Similarity=0.185 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCC----CCCCCHHHHHHHHHHHHHHHHC
Q ss_conf 13899999998603433268999886555522189999999999884229----9998323589999999999860
Q 002517 823 HDAISRTERIVASLSGVWAGPSVTGSCCHKLQPLVDFMLSLAKTLEKKHL----PGVTESETAGLARRLKKMLVEL 894 (913)
Q Consensus 823 ~dai~k~~~Iva~lP~~Wf~~~~~~~~~~~L~~f~~~l~~l~~~l~~~~~----~g~~~~~~~~~~~~l~~iLv~l 894 (913)
+-..+.|=.|..-|-..|-++.+ +..|.+|+.. ..-+...-. -...|..++-.+.++..+|..|
T Consensus 855 ~~~~K~a~~~l~~~v~~~~~~~~-------~~gf~~f~~~-~~~~~f~~p~~~~f~~~Daq~~~~~~e~~~~~k~~ 922 (980)
T 3ibv_A 855 PATQKSSIALVSKMVSLWGGKDG-------IAGFENFTLS-LTPLCFEMPVNPNFNTRDGQSLVVLGELAGLQKII 922 (980)
T ss_dssp CHHHHHHHHHHHHHHHC--------------CCHHHHHHH-HHHHHHHGGGC----------CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCC-------CHHHHHHHHH-HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 48998999999999999779986-------2179999999-99999985169888902388999999999999999
No 8
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=1.00 E-value=1 Score=12.66 Aligned_cols=62 Identities=13% Similarity=0.143 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 876743998997499989996201467678799999999999999999733348999999999999
Q 002517 383 SSLKKTDEDLSSSLLKITDLESSLSAAGEKFIFMQKLRDYVSVICDFLQDKAPYIETLEAEMQKLN 448 (913)
Q Consensus 383 ~el~k~~e~l~~s~~~i~~lE~~~~~a~~ky~FyQelr~YV~dL~~cL~EK~p~IeeLE~~~~~Ll 448 (913)
++|+.....|..-...|..|+..+.+. .||+.=-.-+..|..=|.+.--.|++++.+|..|-
T Consensus 22 rEle~le~~Ie~LE~~i~~le~~ladp----~~y~~d~~~~~~l~~~l~~~e~eLe~~~erWeeLe 83 (89)
T 2lw1_A 22 RELEQLPQLLEDLEAKLEALQTQVADA----SFFSQPHEQTQKVLADMAAAEQELEQAFERWEYLE 83 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHST----TGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCC----CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999998999999999999999997290----11258899999999999999999999999999999
No 9
>3anw_B GINS23, putative uncharacterized protein; SLD5 superfamily, DNA replication, replication; 2.65A {Thermococcus kodakarensis}
Probab=1.00 E-value=1 Score=12.50 Aligned_cols=44 Identities=16% Similarity=0.236 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999-----------997333489999999999999999999999
Q 002517 415 FMQKLRDYVSVICD-----------FLQDKAPYIETLEAEMQKLNKERASAILER 458 (913)
Q Consensus 415 FyQelr~YV~dL~~-----------cL~EK~p~IeeLE~~~~~Ll~eRa~~l~kR 458 (913)
||...+.|+..|-+ -++.|+-.+..+...+..|...|..-++++
T Consensus 81 FY~rvr~yI~~Le~ei~~~~~~d~~~~~~kl~elk~~~~~l~~L~~~Ri~KIv~l 135 (171)
T 3anw_B 81 LYERAEFYAYYLENYVRLNPRESVDTINVKLTKLANLRKKLRDLKLIRFNKILKA 135 (171)
T ss_dssp HHHHHHHHHHHHHHHTTCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999998742476412478779999999999999999999999999
No 10
>3f75_P Toxopain-2, cathepsin L propeptide; medical structural genomics of pathogenic protozoa, MSGPP, C protease, parasite, protozoa, hydrolase; 1.99A {Toxoplasma gondii}
Probab=1.00 E-value=1 Score=12.19 Aligned_cols=23 Identities=17% Similarity=0.417 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHHCHHHHHHH
Q ss_conf 94889999999994380679998
Q 002517 602 QLSVVKERFEKWKRDYSSSYRDA 624 (913)
Q Consensus 602 ~i~~Il~rFe~WR~~~pdsY~dA 624 (913)
+...+...|+.|+.+|...|.+.
T Consensus 17 ~~~~~~~~F~~wk~~~~K~Y~~~ 39 (106)
T 3f75_P 17 KEAHFQDAFSSFQAMYAKSYATE 39 (106)
T ss_dssp CHHHHHHHHHHHHHHHTCCCSSH
T ss_pred CCHHHHHHHHHHHHHHCCCCCCH
T ss_conf 71899999999999969858988
Done!