Query 002517
Match_columns 913
No_of_seqs 214 out of 248
Neff 5.5
Searched_HMMs 13730
Date Tue Mar 26 17:14:48 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002517.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H1_1234-1238//hhsearch_scop/002517hhsearch_scop
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2ixma1 a.268.1.1 (A:23-322) S 4.8 75 0.0054 7.0 5.8 31 634-664 167-200 (300)
2 d2ixoa1 a.268.1.1 (A:2-317) Se 4.7 75 0.0055 7.0 4.4 19 412-430 97-115 (316)
3 d2r7ga1 a.74.1.3 (A:380-578) R 3.3 1.2E+02 0.0086 5.6 5.0 21 769-789 60-84 (199)
4 d1k1fa_ a.147.1.1 (A:) Bcr-Abl 3.3 1.2E+02 0.0087 5.6 4.2 26 387-414 30-55 (67)
5 d1j93a_ c.1.22.1 (A:) Uroporph 3.1 1.3E+02 0.0093 5.4 2.8 24 102-126 20-43 (343)
6 d2ixna1 a.268.1.1 (A:3-299) Se 2.8 1.4E+02 0.01 5.1 6.1 15 287-301 9-23 (297)
7 d1koza_ g.3.6.2 (A:) Grammotox 2.8 1.4E+02 0.01 5.0 -0.0 10 784-793 27-36 (36)
8 d2etsa1 a.24.26.1 (A:1-110) Hy 2.5 1.7E+02 0.012 4.6 2.5 48 385-432 1-48 (110)
9 d1sx5a_ c.52.1.2 (A:) Restrict 2.5 1.7E+02 0.012 4.6 2.2 24 679-702 33-56 (244)
10 d2gjva1 d.323.1.2 (A:1-134) Pu 2.3 1.8E+02 0.013 4.4 2.6 25 734-758 3-27 (134)
No 1
>d2ixma1 a.268.1.1 (A:23-322) Serine/threonine-protein phosphatase 2A regulatory subunit B', PTPA {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.78 E-value=75 Score=7.00 Aligned_cols=31 Identities=6% Similarity=0.209 Sum_probs=14.2
Q ss_pred HHHHHHHHHCCC-CCCCC--CCCCCCCHHHHHHH
Q ss_conf 455987772056-78899--98989895689997
Q 002517 634 MSPYVRLELLKW-DPLHE--DADFSEMKWHNLLF 664 (913)
Q Consensus 634 ~~P~VRlELl~W-nPL~~--~~dle~m~Wf~~L~ 664 (913)
+..--|||...| .|-.. .-+|+.+...--|+
T Consensus 167 l~l~R~Lq~~Y~LEPAGSHGvWgLDDy~fLPfi~ 200 (300)
T d2ixma1 167 LEVMRKLQKTYRMEPAGSQGVWGLDDFQFLPFIW 200 (300)
T ss_dssp HHHHHHHHHHTTCEESSCCGGGCSSSSCCHHHHH
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHH
T ss_conf 9999999998134558888877545431012554
No 2
>d2ixoa1 a.268.1.1 (A:2-317) Serine/threonine-protein phosphatase 2A regulatory subunit B', PTPA {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=4.74 E-value=75 Score=6.97 Aligned_cols=19 Identities=11% Similarity=-0.001 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q ss_conf 8799999999999999999
Q 002517 412 KFIFMQKLRDYVSVICDFL 430 (913)
Q Consensus 412 ky~FyQelr~YV~dL~~cL 430 (913)
=..||+.|...+.+|++.+
T Consensus 97 fR~w~~~l~~~~~~ll~~~ 115 (316)
T d2ixoa1 97 CREWHHKLDERLPQWLQEM 115 (316)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999899999987
No 3
>d2r7ga1 a.74.1.3 (A:380-578) Retinoblastoma tumor suppressor domains {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.27 E-value=1.2e+02 Score=5.62 Aligned_cols=21 Identities=24% Similarity=0.420 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHH----HHHHHHHCC
Q ss_conf 999999996799----987533102
Q 002517 769 ARIAAYRFGVSV----RLMRNICLW 789 (913)
Q Consensus 769 s~f~~rqFwsav----KLL~Nil~W 789 (913)
..|...||..+. |+|.+|+..
T Consensus 60 ~~~a~~R~~~a~~LYY~~Le~Il~~ 84 (199)
T d2r7ga1 60 VEIGSQRYKLGVRLYYRVMESMLKS 84 (199)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 6999999999999999999999999
No 4
>d1k1fa_ a.147.1.1 (A:) Bcr-Abl oncoprotein oligomerization domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.26 E-value=1.2e+02 Score=5.61 Aligned_cols=26 Identities=23% Similarity=0.424 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHCHHHHHHHHH
Q ss_conf 4399899749998999620146767879
Q 002517 387 KTDEDLSSSLLKITDLESSLSAAGEKFI 414 (913)
Q Consensus 387 k~~e~l~~s~~~i~~lE~~~~~a~~ky~ 414 (913)
.+++.|+.++..|..||..++ .+||+
T Consensus 30 diE~eLerCk~~irrLeqel~--~ErF~ 55 (67)
T d1k1fa_ 30 DIEQELERAKASIRRLEQEVN--QERFR 55 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHH
T ss_conf 799999999999999999999--99999
No 5
>d1j93a_ c.1.22.1 (A:) Uroporphyrinogen decarboxylase, UROD {Tobacco (Nicotiana tabacum), UROD-III [TaxId: 4097]}
Probab=3.08 E-value=1.3e+02 Score=5.41 Aligned_cols=24 Identities=25% Similarity=0.346 Sum_probs=19.8
Q ss_pred CCCCCCCCCCHHHHHHHHHCCCCCC
Q ss_conf 3345798995999999972389889
Q 002517 102 NVQAQAGTYTEEYLLELRKNTKTLK 126 (913)
Q Consensus 102 ~~~~~~~~Yt~e~L~eL~~~t~~~~ 126 (913)
-+.-|||.|.+|| ++++++..+++
T Consensus 20 w~mrqaGr~~pey-~~~r~~~~~f~ 43 (343)
T d1j93a_ 20 WLMRQAGRYMKSY-QLLCEKYPLFR 43 (343)
T ss_dssp CCSCCCTTTTTHH-HHHHHSSCSTT
T ss_pred EEEECCCCCCHHH-HHHHHHCCCHH
T ss_conf 8771355567999-99997367388
No 6
>d2ixna1 a.268.1.1 (A:3-299) Serine/threonine-protein phosphatase 2A regulatory subunit B', PTPA {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=2.84 E-value=1.4e+02 Score=5.12 Aligned_cols=15 Identities=33% Similarity=0.707 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHC
Q ss_conf 466559999997101
Q 002517 287 DEDVMWEEEQVRKGL 301 (913)
Q Consensus 287 EE~~~WE~eQiRKg~ 301 (913)
++...|+.-|.-+-+
T Consensus 9 ~D~~~w~~S~Ay~~i 23 (297)
T d2ixna1 9 DDMKLWEESPTRAHF 23 (297)
T ss_dssp TTTHHHHSSHHHHHH
T ss_pred HHHHHHHCCHHHHHH
T ss_conf 789888617899999
No 7
>d1koza_ g.3.6.2 (A:) Grammotoxin SIA, GrTx {Tarantula (Grammostola spatulata) [TaxId: 432528]}
Probab=2.78 E-value=1.4e+02 Score=5.05 Aligned_cols=10 Identities=50% Similarity=1.292 Sum_probs=0.0
Q ss_pred HHHHCCCCCC
Q ss_conf 5331023325
Q 002517 784 RNICLWKEVF 793 (913)
Q Consensus 784 ~Nil~W~~il 793 (913)
+||+.|+|-+
T Consensus 27 rnicvwdgsv 36 (36)
T d1koza_ 27 RNICVWDGSV 36 (36)
T ss_dssp SSBCEECCCC
T ss_pred CEEEEECCCC
T ss_conf 6167532769
No 8
>d2etsa1 a.24.26.1 (A:1-110) Hypothetical protein MW1337 {Staphylococcus aureus [TaxId: 1280]}
Probab=2.49 E-value=1.7e+02 Score=4.64 Aligned_cols=48 Identities=15% Similarity=0.216 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 674399899749998999620146767879999999999999999973
Q 002517 385 LKKTDEDLSSSLLKITDLESSLSAAGEKFIFMQKLRDYVSVICDFLQD 432 (913)
Q Consensus 385 l~k~~e~l~~s~~~i~~lE~~~~~a~~ky~FyQelr~YV~dL~~cL~E 432 (913)
+....+.|-.....+...=.....-+..|.||++++-|+...-..+++
T Consensus 1 l~~lteqLi~~~e~~~~~y~~~ke~~~~~DF~~~VKPf~d~vd~~l~~ 48 (110)
T d2etsa1 1 MNDLVESLIYEVNNMQQNFENVKSQQQDHDFYQTVKPYTEHIDSILNE 48 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCCCCTTTTHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 958999999999999999999985389998235300337889999999
No 9
>d1sx5a_ c.52.1.2 (A:) Restriction endonuclease EcoRV {Escherichia coli [TaxId: 562]}
Probab=2.45 E-value=1.7e+02 Score=4.59 Aligned_cols=24 Identities=21% Similarity=0.386 Sum_probs=0.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 887671699999976766888763
Q 002517 679 DADANLVPTLVEKVALPILHHDIA 702 (913)
Q Consensus 679 d~D~~llp~iIEKvVlPkLt~~ie 702 (913)
..|-.+|++|+|-.++|++..|++
T Consensus 33 ssDTKiiSKIlEi~lfP~~~~fa~ 56 (244)
T d1sx5a_ 33 GSDTAVLSTIFELFSRPIINKIAE 56 (244)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 466449999999999999999998
No 10
>d2gjva1 d.323.1.2 (A:1-134) Putative cytoplasmic protein STM4215 {Salmonella typhimurium [TaxId: 90371]}
Probab=2.32 E-value=1.8e+02 Score=4.40 Aligned_cols=25 Identities=12% Similarity=0.129 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 9999999999999975212556896
Q 002517 734 LKDLLVAIHTCLAEAVANIAVPTWS 758 (913)
Q Consensus 734 ~q~Ll~aI~~RLk~aVedvfIPlyp 758 (913)
.+.++++|+.||++.+.++-|-+||
T Consensus 3 t~pii~aiv~RL~~~lP~~~ve~fp 27 (134)
T d2gjva1 3 TLSVIHTVANRLRELNPDMDIHISS 27 (134)
T ss_dssp HHHHHHHHHHHHHHHCTTEEEECCS
T ss_pred CHHHHHHHHHHHHHHCCCCEEEECC
T ss_conf 1678999999998669676567678
Done!