Query 002519
Match_columns 913
No_of_seqs 1326 out of 3991
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 01:37:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002519.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002519hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0271 Notchless-like WD40 re 100.0 1.8E-45 3.9E-50 379.1 26.0 310 552-913 119-479 (480)
2 KOG0271 Notchless-like WD40 re 100.0 2.4E-43 5.2E-48 363.4 25.6 288 624-913 106-437 (480)
3 KOG0272 U4/U6 small nuclear ri 100.0 2.8E-41 6E-46 353.1 24.4 287 622-913 164-458 (459)
4 KOG0286 G-protein beta subunit 100.0 5.3E-39 1.1E-43 321.9 34.0 291 620-913 42-343 (343)
5 KOG0265 U5 snRNP-specific prot 100.0 6.9E-37 1.5E-41 308.0 28.6 285 626-911 40-334 (338)
6 KOG0272 U4/U6 small nuclear ri 100.0 1.5E-37 3.3E-42 325.2 22.5 244 624-872 208-458 (459)
7 KOG0318 WD40 repeat stress pro 100.0 5.5E-35 1.2E-39 312.9 37.7 296 614-913 171-600 (603)
8 KOG0279 G protein beta subunit 100.0 5.8E-35 1.2E-39 291.5 32.8 284 623-913 5-311 (315)
9 KOG0285 Pleiotropic regulator 100.0 8.9E-36 1.9E-40 305.2 26.5 288 620-913 138-437 (460)
10 KOG0266 WD40 repeat-containing 100.0 7.3E-34 1.6E-38 328.3 39.9 286 624-913 149-452 (456)
11 KOG0295 WD40 repeat-containing 100.0 2.6E-35 5.6E-40 303.3 24.1 288 622-913 97-404 (406)
12 KOG0315 G-protein beta subunit 100.0 4.4E-34 9.5E-39 280.5 29.3 266 646-913 11-286 (311)
13 KOG0284 Polyadenylation factor 100.0 6.7E-36 1.5E-40 311.3 17.4 275 633-913 96-378 (464)
14 cd00200 WD40 WD40 domain, foun 100.0 1.3E-32 2.9E-37 294.8 37.7 282 627-913 3-289 (289)
15 KOG0273 Beta-transducin family 100.0 1.8E-33 3.9E-38 298.0 28.9 281 625-913 171-480 (524)
16 KOG0315 G-protein beta subunit 100.0 6.7E-33 1.5E-37 272.1 30.3 267 622-894 29-309 (311)
17 KOG0282 mRNA splicing factor [ 100.0 1.1E-34 2.4E-39 308.6 19.0 290 622-913 203-503 (503)
18 KOG0293 WD40 repeat-containing 100.0 5.5E-34 1.2E-38 296.8 22.1 286 621-913 212-511 (519)
19 KOG0645 WD40 repeat protein [G 100.0 4.1E-32 8.9E-37 270.1 33.2 281 623-913 4-309 (312)
20 KOG0273 Beta-transducin family 100.0 2.1E-32 4.5E-37 290.0 30.1 274 633-913 235-521 (524)
21 KOG0291 WD40-repeat-containing 100.0 5.8E-32 1.3E-36 300.0 34.6 292 617-913 291-610 (893)
22 KOG0279 G protein beta subunit 100.0 1.5E-32 3.3E-37 274.3 26.8 245 624-874 54-313 (315)
23 KOG0319 WD40-repeat-containing 100.0 3.4E-32 7.3E-37 302.1 30.8 289 621-913 311-617 (775)
24 KOG0263 Transcription initiati 100.0 2.9E-32 6.3E-37 306.3 28.3 274 625-903 370-703 (707)
25 KOG0296 Angio-associated migra 100.0 3.6E-31 7.8E-36 273.1 30.7 297 607-913 83-396 (399)
26 KOG0263 Transcription initiati 100.0 6E-32 1.3E-36 303.8 26.7 263 552-831 382-651 (707)
27 KOG0318 WD40 repeat stress pro 100.0 1.4E-30 2.9E-35 279.3 34.8 356 551-913 62-558 (603)
28 KOG0286 G-protein beta subunit 100.0 8.3E-31 1.8E-35 263.1 31.1 241 627-872 91-343 (343)
29 KOG0319 WD40-repeat-containing 100.0 1.2E-31 2.7E-36 297.7 27.5 349 554-913 25-575 (775)
30 PLN00181 protein SPA1-RELATED; 100.0 1.8E-30 3.9E-35 321.6 41.2 282 629-913 479-791 (793)
31 KOG0291 WD40-repeat-containing 100.0 4E-30 8.7E-35 285.5 38.2 278 631-913 263-548 (893)
32 KOG0316 Conserved WD40 repeat- 100.0 5E-31 1.1E-35 256.9 25.9 280 623-912 7-296 (307)
33 KOG0281 Beta-TrCP (transducin 100.0 1.2E-32 2.7E-37 280.7 15.3 264 631-913 195-475 (499)
34 KOG0276 Vesicle coat complex C 100.0 4.2E-31 9.1E-36 287.5 26.6 282 625-911 5-295 (794)
35 KOG0295 WD40 repeat-containing 100.0 1.1E-30 2.4E-35 269.2 25.6 242 627-873 144-405 (406)
36 KOG0306 WD40-repeat-containing 100.0 1.1E-29 2.4E-34 281.8 33.2 341 559-912 33-577 (888)
37 KOG0278 Serine/threonine kinas 100.0 3.4E-31 7.3E-36 260.0 18.4 278 628-913 9-295 (334)
38 KOG0284 Polyadenylation factor 100.0 7.3E-32 1.6E-36 281.3 14.0 260 610-874 115-380 (464)
39 KOG0306 WD40-repeat-containing 100.0 3.6E-30 7.7E-35 285.8 28.1 278 628-913 368-662 (888)
40 KOG1407 WD40 repeat protein [F 100.0 9.8E-30 2.1E-34 251.7 27.1 280 627-912 14-308 (313)
41 KOG0275 Conserved WD40 repeat- 100.0 3.2E-31 7E-36 267.8 16.5 276 632-913 212-507 (508)
42 KOG0643 Translation initiation 100.0 1.9E-29 4E-34 250.4 28.3 279 628-912 5-314 (327)
43 KOG0296 Angio-associated migra 100.0 4.7E-29 1E-33 257.5 27.2 283 625-913 56-354 (399)
44 KOG0292 Vesicle coat complex C 100.0 2.5E-29 5.3E-34 282.5 26.9 281 628-912 4-318 (1202)
45 KOG0266 WD40 repeat-containing 100.0 5.9E-29 1.3E-33 287.5 30.5 244 626-874 196-454 (456)
46 KOG0276 Vesicle coat complex C 100.0 8.8E-29 1.9E-33 269.5 29.2 241 627-870 49-295 (794)
47 KOG0288 WD40 repeat protein Ti 100.0 3.3E-30 7.2E-35 269.4 17.3 284 624-913 166-459 (459)
48 KOG0772 Uncharacterized conser 100.0 5.3E-29 1.1E-33 266.1 25.8 291 621-912 155-484 (641)
49 KOG1446 Histone H3 (Lys4) meth 100.0 8.5E-28 1.8E-32 245.3 33.1 284 622-912 3-300 (311)
50 KOG0285 Pleiotropic regulator 100.0 2.4E-29 5.1E-34 258.1 21.2 242 665-913 141-387 (460)
51 KOG0640 mRNA cleavage stimulat 100.0 1E-28 2.2E-33 249.1 23.4 285 624-913 103-424 (430)
52 KOG0281 Beta-TrCP (transducin 100.0 8.1E-30 1.8E-34 260.2 15.6 272 594-879 198-482 (499)
53 KOG0313 Microtubule binding pr 100.0 2.8E-28 6.1E-33 252.7 26.1 276 631-913 103-416 (423)
54 KOG0275 Conserved WD40 repeat- 100.0 2.9E-29 6.2E-34 253.8 16.9 276 553-872 218-507 (508)
55 cd00200 WD40 WD40 domain, foun 100.0 8.1E-27 1.8E-31 249.9 35.6 241 627-872 45-289 (289)
56 KOG0265 U5 snRNP-specific prot 100.0 1.8E-27 3.8E-32 240.3 27.1 243 625-873 82-337 (338)
57 KOG0268 Sof1-like rRNA process 100.0 4.2E-29 9E-34 257.1 15.6 279 624-913 57-343 (433)
58 KOG0282 mRNA splicing factor [ 100.0 5.1E-29 1.1E-33 265.5 15.8 247 664-913 203-460 (503)
59 KOG0292 Vesicle coat complex C 100.0 3.4E-27 7.4E-32 265.4 29.8 241 628-874 46-321 (1202)
60 KOG0645 WD40 repeat protein [G 100.0 3.5E-27 7.5E-32 235.0 26.6 246 622-874 49-311 (312)
61 KOG0277 Peroxisomal targeting 100.0 1.1E-27 2.3E-32 236.4 22.5 276 636-913 11-307 (311)
62 KOG0310 Conserved WD40 repeat- 100.0 3.4E-27 7.4E-32 252.3 26.3 274 633-911 26-305 (487)
63 KOG0316 Conserved WD40 repeat- 100.0 3.9E-27 8.5E-32 229.8 24.3 265 552-868 21-294 (307)
64 KOG0283 WD40 repeat-containing 100.0 2.2E-27 4.9E-32 269.5 25.9 243 626-874 259-576 (712)
65 KOG0274 Cdc4 and related F-box 100.0 1E-26 2.3E-31 268.2 30.4 270 631-913 206-480 (537)
66 KOG0289 mRNA splicing factor [ 100.0 9.6E-27 2.1E-31 244.7 26.9 276 633-912 219-503 (506)
67 KOG0293 WD40 repeat-containing 100.0 2.5E-27 5.3E-32 247.4 22.0 248 622-875 258-514 (519)
68 PTZ00420 coronin; Provisional 100.0 9.7E-26 2.1E-30 260.9 37.3 247 651-897 50-318 (568)
69 PLN00181 protein SPA1-RELATED; 100.0 8.1E-26 1.7E-30 280.2 37.9 238 633-873 532-792 (793)
70 PTZ00421 coronin; Provisional 100.0 1.7E-25 3.6E-30 258.0 35.6 263 632-896 19-314 (493)
71 KOG0973 Histone transcription 100.0 3E-26 6.4E-31 266.3 29.4 277 632-912 12-352 (942)
72 KOG0278 Serine/threonine kinas 99.9 1.9E-27 4.1E-32 233.7 15.7 250 624-879 50-302 (334)
73 KOG0305 Anaphase promoting com 99.9 5.5E-26 1.2E-30 252.7 28.3 265 639-913 183-459 (484)
74 KOG0300 WD40 repeat-containing 99.9 2.1E-26 4.6E-31 232.6 22.5 287 622-913 137-474 (481)
75 KOG0647 mRNA export protein (c 99.9 8.8E-26 1.9E-30 228.1 26.1 271 631-904 25-312 (347)
76 KOG0277 Peroxisomal targeting 99.9 4.3E-26 9.3E-31 225.1 20.2 248 622-873 50-308 (311)
77 KOG0310 Conserved WD40 repeat- 99.9 1.6E-25 3.4E-30 239.6 26.0 237 633-875 68-310 (487)
78 KOG0641 WD40 repeat protein [G 99.9 4.1E-24 9E-29 207.0 33.3 287 622-912 22-346 (350)
79 KOG0294 WD40 repeat-containing 99.9 4.7E-25 1E-29 224.0 26.3 264 620-893 30-305 (362)
80 KOG0308 Conserved WD40 repeat- 99.9 3.2E-26 6.8E-31 251.3 18.8 268 643-913 35-325 (735)
81 KOG0283 WD40 repeat-containing 99.9 1.4E-25 3E-30 255.0 24.1 279 546-830 265-577 (712)
82 KOG0313 Microtubule binding pr 99.9 2.8E-25 6.1E-30 230.6 24.1 259 607-874 122-418 (423)
83 KOG1407 WD40 repeat protein [F 99.9 1.5E-25 3.3E-30 222.1 21.1 239 669-911 14-257 (313)
84 KOG0274 Cdc4 and related F-box 99.9 4.7E-25 1E-29 254.5 28.6 248 619-879 234-487 (537)
85 KOG1408 WD40 repeat protein [F 99.9 3.6E-25 7.7E-30 243.8 25.3 347 566-913 279-711 (1080)
86 KOG0973 Histone transcription 99.9 4.5E-25 9.8E-30 256.5 27.5 250 624-877 60-358 (942)
87 KOG2096 WD40 repeat protein [G 99.9 2.4E-24 5.3E-29 218.5 26.3 283 626-912 79-399 (420)
88 KOG0288 WD40 repeat protein Ti 99.9 2.2E-25 4.7E-30 233.5 19.3 254 609-871 196-458 (459)
89 PTZ00421 coronin; Provisional 99.9 8.5E-24 1.8E-28 243.9 34.5 223 628-855 70-314 (493)
90 KOG1036 Mitotic spindle checkp 99.9 3.5E-24 7.6E-29 217.7 27.3 269 632-905 12-294 (323)
91 KOG1539 WD repeat protein [Gen 99.9 1.1E-23 2.4E-28 237.3 33.7 294 618-912 187-645 (910)
92 KOG0305 Anaphase promoting com 99.9 1.5E-24 3.2E-29 241.3 26.3 237 633-876 217-463 (484)
93 KOG0640 mRNA cleavage stimulat 99.9 4.6E-25 9.9E-30 222.8 19.9 290 553-874 117-426 (430)
94 KOG0301 Phospholipase A2-activ 99.9 2.9E-24 6.3E-29 237.8 27.0 274 622-912 3-285 (745)
95 KOG0299 U3 snoRNP-associated p 99.9 3.3E-24 7.2E-29 227.8 26.4 271 626-903 135-443 (479)
96 KOG0294 WD40 repeat-containing 99.9 5.2E-24 1.1E-28 216.4 26.5 257 647-913 3-279 (362)
97 KOG1273 WD40 repeat protein [G 99.9 4.4E-24 9.6E-29 216.4 24.9 275 636-913 26-320 (405)
98 KOG0641 WD40 repeat protein [G 99.9 1.8E-22 3.8E-27 195.8 32.0 247 624-874 80-349 (350)
99 KOG0639 Transducin-like enhanc 99.9 2.3E-24 4.9E-29 229.6 20.6 275 631-912 417-701 (705)
100 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 1.7E-22 3.6E-27 221.0 36.1 262 645-913 1-277 (300)
101 KOG0647 mRNA export protein (c 99.9 1.8E-23 4E-28 211.4 25.9 229 627-864 66-313 (347)
102 PTZ00420 coronin; Provisional 99.9 7.6E-23 1.6E-27 237.0 33.7 228 624-856 65-318 (568)
103 KOG1332 Vesicle coat complex C 99.9 4.3E-24 9.4E-29 209.9 19.0 246 630-875 8-287 (299)
104 KOG1446 Histone H3 (Lys4) meth 99.9 1.3E-22 2.8E-27 207.5 30.4 246 665-913 4-260 (311)
105 KOG0301 Phospholipase A2-activ 99.9 1.7E-23 3.7E-28 231.7 24.7 252 607-875 32-289 (745)
106 KOG0643 Translation initiation 99.9 4.6E-23 9.9E-28 205.1 25.1 231 670-904 5-250 (327)
107 KOG0308 Conserved WD40 repeat- 99.9 3.5E-24 7.6E-29 235.3 17.8 303 607-913 44-391 (735)
108 KOG2445 Nuclear pore complex c 99.9 6.9E-23 1.5E-27 207.6 25.0 255 630-913 10-316 (361)
109 KOG2055 WD40 repeat protein [G 99.9 4.9E-23 1.1E-27 218.6 24.9 282 631-913 211-510 (514)
110 KOG1408 WD40 repeat protein [F 99.9 1.5E-23 3.3E-28 231.1 21.8 245 629-876 455-715 (1080)
111 KOG0650 WD40 repeat nucleolar 99.9 4.7E-23 1E-27 224.3 23.9 289 620-912 387-732 (733)
112 KOG2106 Uncharacterized conser 99.9 3.1E-22 6.7E-27 214.1 29.5 334 570-913 183-579 (626)
113 KOG0264 Nucleosome remodeling 99.9 4.2E-23 9.1E-28 219.8 22.9 247 629-875 120-405 (422)
114 KOG0639 Transducin-like enhanc 99.9 4.5E-23 9.8E-28 219.8 22.7 260 607-873 437-703 (705)
115 KOG0289 mRNA splicing factor [ 99.9 1.5E-22 3.3E-27 213.2 25.1 249 622-873 250-505 (506)
116 KOG0299 U3 snoRNP-associated p 99.9 1.5E-22 3.3E-27 215.2 24.8 282 550-864 144-445 (479)
117 KOG1332 Vesicle coat complex C 99.9 2.6E-23 5.7E-28 204.4 17.6 241 672-913 8-284 (299)
118 KOG1539 WD repeat protein [Gen 99.9 3.3E-21 7.1E-26 217.4 35.6 358 549-913 75-604 (910)
119 KOG0268 Sof1-like rRNA process 99.9 1.6E-23 3.5E-28 216.1 15.7 260 606-877 85-348 (433)
120 KOG2106 Uncharacterized conser 99.9 1.5E-21 3.3E-26 208.9 30.4 337 566-913 221-624 (626)
121 KOG0772 Uncharacterized conser 99.9 1.2E-22 2.5E-27 217.8 21.7 235 633-871 214-484 (641)
122 KOG4283 Transcription-coupled 99.9 1.1E-21 2.3E-26 197.5 25.3 281 628-912 38-362 (397)
123 KOG0646 WD40 repeat protein [G 99.9 2.7E-22 5.8E-27 213.8 21.8 227 632-861 80-336 (476)
124 KOG0267 Microtubule severing p 99.9 6.4E-24 1.4E-28 235.7 9.7 237 626-906 21-259 (825)
125 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 2.1E-20 4.6E-25 204.3 37.4 263 624-895 22-300 (300)
126 KOG0300 WD40 repeat-containing 99.9 2.3E-22 4.9E-27 203.6 19.5 256 647-913 126-426 (481)
127 KOG0269 WD40 repeat-containing 99.9 1.7E-22 3.8E-27 226.1 20.2 274 634-910 40-335 (839)
128 KOG1063 RNA polymerase II elon 99.9 1.6E-21 3.5E-26 216.0 27.4 283 627-913 261-646 (764)
129 KOG0264 Nucleosome remodeling 99.9 7.6E-22 1.7E-26 210.3 22.2 240 672-913 121-402 (422)
130 KOG0321 WD40 repeat-containing 99.9 6.3E-22 1.4E-26 217.3 21.8 274 638-913 54-389 (720)
131 KOG2048 WD40 repeat protein [G 99.9 4E-20 8.8E-25 205.0 34.0 354 551-913 28-503 (691)
132 KOG1274 WD40 repeat protein [G 99.9 8.7E-21 1.9E-25 216.5 29.0 275 630-912 10-297 (933)
133 KOG2048 WD40 repeat protein [G 99.9 4.7E-20 1E-24 204.4 31.9 277 627-911 19-315 (691)
134 KOG4328 WD40 protein [Function 99.9 1E-20 2.2E-25 201.1 24.6 292 620-912 173-492 (498)
135 KOG1036 Mitotic spindle checkp 99.9 2.4E-20 5.2E-25 189.9 26.2 225 631-865 52-295 (323)
136 KOG0302 Ribosome Assembly prot 99.9 1.5E-20 3.2E-25 195.3 22.3 246 629-912 147-435 (440)
137 KOG0646 WD40 repeat protein [G 99.9 2.5E-20 5.4E-25 198.9 24.2 256 651-913 13-305 (476)
138 KOG1274 WD40 repeat protein [G 99.9 3.9E-20 8.4E-25 211.3 27.2 239 672-913 10-260 (933)
139 KOG4378 Nuclear protein COP1 [ 99.9 1.2E-20 2.7E-25 201.2 20.9 257 635-897 36-305 (673)
140 KOG0270 WD40 repeat-containing 99.9 1.7E-20 3.7E-25 199.0 21.5 241 637-879 177-454 (463)
141 KOG0267 Microtubule severing p 99.9 6.8E-22 1.5E-26 219.7 9.9 198 625-824 62-262 (825)
142 KOG0307 Vesicle coat complex C 99.9 5E-21 1.1E-25 223.7 17.3 242 633-877 64-330 (1049)
143 KOG4227 WD40 repeat protein [G 99.9 4.3E-20 9.2E-25 191.7 20.9 315 594-913 17-385 (609)
144 KOG1034 Transcriptional repres 99.9 8.8E-20 1.9E-24 186.7 22.5 288 622-913 26-381 (385)
145 KOG0307 Vesicle coat complex C 99.8 3.8E-21 8.2E-26 224.8 13.5 274 636-912 9-324 (1049)
146 KOG2096 WD40 repeat protein [G 99.8 1.4E-19 3.1E-24 184.0 22.8 242 668-912 79-357 (420)
147 KOG1538 Uncharacterized conser 99.8 1.6E-19 3.6E-24 198.0 22.8 269 635-913 14-291 (1081)
148 KOG4378 Nuclear protein COP1 [ 99.8 1.2E-19 2.5E-24 193.8 20.9 281 568-856 13-305 (673)
149 KOG4283 Transcription-coupled 99.8 1.8E-19 4E-24 181.5 21.1 206 672-877 40-279 (397)
150 KOG0321 WD40 repeat-containing 99.8 1E-19 2.2E-24 200.2 20.7 247 627-876 94-393 (720)
151 KOG4328 WD40 protein [Function 99.8 1.2E-19 2.5E-24 193.1 20.4 254 660-913 171-448 (498)
152 KOG2919 Guanine nucleotide-bin 99.8 4.1E-19 9E-24 181.2 23.0 268 634-906 50-361 (406)
153 COG2319 FOG: WD40 repeat [Gene 99.8 5.2E-17 1.1E-21 183.4 42.3 293 611-913 135-440 (466)
154 KOG0269 WD40 repeat-containing 99.8 2.4E-20 5.2E-25 209.1 14.3 216 609-825 109-336 (839)
155 KOG1445 Tumor-specific antigen 99.8 5.2E-19 1.1E-23 193.2 23.7 136 778-913 601-748 (1012)
156 KOG0650 WD40 repeat nucleolar 99.8 2.8E-19 6.1E-24 195.1 21.4 242 666-912 391-677 (733)
157 KOG2055 WD40 repeat protein [G 99.8 7.7E-19 1.7E-23 187.0 23.6 247 625-874 249-512 (514)
158 KOG0322 G-protein beta subunit 99.8 7.8E-20 1.7E-24 182.0 15.0 280 625-913 6-321 (323)
159 KOG1009 Chromatin assembly com 99.8 1.1E-18 2.4E-23 183.4 24.0 295 586-911 28-368 (434)
160 COG2319 FOG: WD40 repeat [Gene 99.8 7E-17 1.5E-21 182.3 38.9 282 628-913 60-357 (466)
161 KOG1273 WD40 repeat protein [G 99.8 1.6E-18 3.4E-23 176.4 21.6 273 551-875 26-323 (405)
162 KOG0642 Cell-cycle nuclear pro 99.8 1.5E-19 3.2E-24 197.0 15.0 252 623-879 284-566 (577)
163 KOG0270 WD40 repeat-containing 99.8 3.8E-18 8.2E-23 181.2 23.0 233 679-913 177-447 (463)
164 KOG1063 RNA polymerase II elon 99.8 6.5E-18 1.4E-22 187.7 25.7 288 623-912 44-388 (764)
165 KOG0644 Uncharacterized conser 99.8 7.2E-20 1.6E-24 205.8 9.1 275 622-912 179-465 (1113)
166 KOG0302 Ribosome Assembly prot 99.8 1.9E-18 4.1E-23 179.8 18.4 205 672-913 148-376 (440)
167 KOG1334 WD40 repeat protein [G 99.8 3.9E-19 8.5E-24 190.2 12.9 291 622-912 131-463 (559)
168 KOG1188 WD40 repeat protein [G 99.8 4.5E-18 9.7E-23 175.3 18.1 267 646-913 41-344 (376)
169 KOG1007 WD repeat protein TSSC 99.8 1.1E-17 2.5E-22 168.4 20.3 282 613-911 43-357 (370)
170 PRK11028 6-phosphogluconolacto 99.8 2.5E-16 5.4E-21 175.7 32.1 263 648-913 5-302 (330)
171 PRK11028 6-phosphogluconolacto 99.8 5.9E-16 1.3E-20 172.7 34.1 261 610-874 12-304 (330)
172 KOG1517 Guanine nucleotide bin 99.8 1.3E-16 2.7E-21 184.1 27.8 279 633-913 1064-1379(1387)
173 KOG0303 Actin-binding protein 99.8 1E-16 2.2E-21 167.7 23.4 234 644-878 43-298 (472)
174 KOG1034 Transcriptional repres 99.8 3.4E-17 7.4E-22 167.9 18.5 240 631-874 87-383 (385)
175 KOG2445 Nuclear pore complex c 99.8 2.1E-16 4.6E-21 160.9 23.9 238 621-893 47-340 (361)
176 KOG1240 Protein kinase contain 99.7 9.4E-16 2E-20 179.8 31.3 293 621-913 1036-1431(1431)
177 KOG0290 Conserved WD40 repeat- 99.7 1.2E-16 2.6E-21 161.3 20.1 239 630-871 93-362 (364)
178 KOG2919 Guanine nucleotide-bin 99.7 4.5E-16 9.8E-21 159.2 23.0 230 633-865 104-361 (406)
179 KOG0642 Cell-cycle nuclear pro 99.7 3.1E-17 6.8E-22 179.0 15.0 241 668-913 287-559 (577)
180 KOG0303 Actin-binding protein 99.7 1.7E-16 3.7E-21 166.2 19.7 200 627-831 75-296 (472)
181 KOG0649 WD40 repeat protein [G 99.7 3.9E-16 8.4E-21 153.9 21.0 227 677-912 12-271 (325)
182 KOG1188 WD40 repeat protein [G 99.7 2.3E-16 5E-21 162.8 20.1 249 627-875 64-347 (376)
183 KOG1587 Cytoplasmic dynein int 99.7 1.2E-15 2.5E-20 175.4 28.1 257 655-913 222-514 (555)
184 KOG0649 WD40 repeat protein [G 99.7 1.9E-15 4.2E-20 149.0 25.5 268 634-913 11-314 (325)
185 KOG1524 WD40 repeat-containing 99.7 5.8E-16 1.2E-20 167.2 19.9 259 631-911 12-282 (737)
186 KOG1963 WD40 repeat protein [G 99.7 5.1E-15 1.1E-19 169.8 27.7 279 631-913 203-536 (792)
187 KOG1538 Uncharacterized conser 99.7 1.4E-15 3.1E-20 167.4 21.3 236 626-874 46-293 (1081)
188 KOG1587 Cytoplasmic dynein int 99.7 1.8E-15 3.8E-20 173.9 22.5 244 632-876 241-518 (555)
189 KOG2110 Uncharacterized conser 99.7 3E-14 6.4E-19 148.9 29.1 231 633-875 5-249 (391)
190 KOG1310 WD40 repeat protein [G 99.7 2.5E-16 5.5E-21 170.4 14.2 235 623-879 40-308 (758)
191 KOG0290 Conserved WD40 repeat- 99.7 5.8E-15 1.3E-19 149.2 22.7 282 624-911 36-361 (364)
192 KOG1523 Actin-related protein 99.7 6.8E-15 1.5E-19 150.9 23.1 225 628-855 5-260 (361)
193 KOG4227 WD40 repeat protein [G 99.7 8.5E-15 1.8E-19 152.6 23.0 242 631-873 103-386 (609)
194 PRK01742 tolB translocation pr 99.7 7.7E-15 1.7E-19 169.3 25.2 230 654-896 183-426 (429)
195 KOG1007 WD repeat protein TSSC 99.7 6.6E-15 1.4E-19 148.6 20.1 207 621-829 110-361 (370)
196 KOG2110 Uncharacterized conser 99.7 4.5E-14 9.7E-19 147.6 26.3 228 675-913 5-246 (391)
197 KOG1272 WD40-repeat-containing 99.7 4.4E-16 9.5E-21 166.1 11.7 262 635-908 131-402 (545)
198 PF02239 Cytochrom_D1: Cytochr 99.6 2.9E-13 6.2E-18 151.7 33.5 263 648-913 9-345 (369)
199 PRK01742 tolB translocation pr 99.6 1.1E-14 2.5E-19 167.9 23.0 223 626-855 196-426 (429)
200 KOG1445 Tumor-specific antigen 99.6 2.2E-15 4.9E-20 165.1 15.4 231 642-913 588-842 (1012)
201 KOG2139 WD40 repeat protein [G 99.6 7.1E-14 1.5E-18 145.3 25.5 276 633-912 98-428 (445)
202 KOG4497 Uncharacterized conser 99.6 1.1E-13 2.4E-18 142.1 24.8 269 634-908 49-425 (447)
203 KOG1963 WD40 repeat protein [G 99.6 1.4E-13 3E-18 158.1 28.4 278 631-912 14-319 (792)
204 KOG2394 WD40 protein DMR-N9 [G 99.6 2.1E-14 4.6E-19 155.8 19.9 242 635-894 125-383 (636)
205 KOG0771 Prolactin regulatory e 99.6 7.8E-15 1.7E-19 156.0 16.2 191 637-829 148-354 (398)
206 PRK03629 tolB translocation pr 99.6 3.3E-13 7.1E-18 155.5 30.5 233 655-896 179-428 (429)
207 KOG2321 WD40 repeat protein [G 99.6 1.5E-13 3.2E-18 150.3 24.4 275 631-912 49-340 (703)
208 KOG1009 Chromatin assembly com 99.6 1.4E-13 3.1E-18 145.3 21.4 238 622-879 112-377 (434)
209 KOG1523 Actin-related protein 99.6 2E-13 4.4E-18 140.2 21.8 234 671-906 6-269 (361)
210 KOG1524 WD40 repeat-containing 99.6 3.1E-14 6.7E-19 154.0 16.6 205 646-871 76-283 (737)
211 PRK05137 tolB translocation pr 99.6 1.1E-12 2.4E-17 151.8 30.3 232 655-896 182-433 (435)
212 PRK04922 tolB translocation pr 99.6 6.4E-13 1.4E-17 153.7 27.5 232 655-895 184-432 (433)
213 KOG2315 Predicted translation 99.6 1.2E-12 2.6E-17 143.7 27.6 268 635-913 75-388 (566)
214 KOG3881 Uncharacterized conser 99.6 2.4E-13 5.1E-18 143.2 21.0 261 631-896 53-342 (412)
215 KOG4497 Uncharacterized conser 99.6 3.4E-13 7.4E-18 138.5 21.4 271 638-912 13-388 (447)
216 KOG1517 Guanine nucleotide bin 99.6 4.7E-13 1E-17 155.0 24.3 252 654-913 1049-1331(1387)
217 KOG0644 Uncharacterized conser 99.6 7.1E-15 1.5E-19 166.1 9.1 244 622-878 221-472 (1113)
218 KOG0771 Prolactin regulatory e 99.5 5E-13 1.1E-17 142.4 22.0 266 633-912 13-351 (398)
219 PF10282 Lactonase: Lactonase, 99.5 3.3E-11 7.1E-16 135.1 38.0 271 622-893 26-345 (345)
220 KOG1354 Serine/threonine prote 99.5 5.5E-13 1.2E-17 137.9 21.0 276 632-912 24-431 (433)
221 KOG2111 Uncharacterized conser 99.5 1E-11 2.2E-16 127.8 30.0 231 635-875 7-257 (346)
222 PRK03629 tolB translocation pr 99.5 5.8E-12 1.2E-16 145.2 31.6 203 698-908 180-396 (429)
223 PF02239 Cytochrom_D1: Cytochr 99.5 4.6E-12 9.9E-17 142.0 28.2 252 625-881 70-354 (369)
224 PF10282 Lactonase: Lactonase, 99.5 7.5E-11 1.6E-15 132.1 37.8 266 648-913 2-320 (345)
225 PRK02889 tolB translocation pr 99.5 5.7E-12 1.2E-16 145.3 29.0 233 655-896 176-425 (427)
226 KOG1240 Protein kinase contain 99.5 2.2E-12 4.8E-17 151.9 24.2 249 660-913 1034-1332(1431)
227 KOG1310 WD40 repeat protein [G 99.5 9.8E-14 2.1E-18 150.6 12.0 164 666-829 41-231 (758)
228 PRK02889 tolB translocation pr 99.5 3E-12 6.4E-17 147.7 25.2 222 627-855 189-425 (427)
229 COG5354 Uncharacterized protei 99.5 1.5E-11 3.3E-16 133.4 27.8 302 601-913 41-393 (561)
230 KOG1409 Uncharacterized conser 99.5 1.8E-12 3.8E-17 134.4 18.8 250 621-875 12-271 (404)
231 KOG3881 Uncharacterized conser 99.5 3.3E-12 7.1E-17 134.7 20.9 235 674-913 54-318 (412)
232 KOG2111 Uncharacterized conser 99.5 1.5E-11 3.2E-16 126.7 25.1 229 677-912 7-253 (346)
233 PRK04922 tolB translocation pr 99.5 1E-11 2.2E-16 143.7 26.5 221 625-854 195-432 (433)
234 KOG1334 WD40 repeat protein [G 99.5 8.1E-13 1.8E-17 142.3 14.5 249 665-913 132-422 (559)
235 TIGR02800 propeller_TolB tol-p 99.4 2.6E-11 5.6E-16 139.9 28.1 231 654-893 169-416 (417)
236 KOG2321 WD40 repeat protein [G 99.4 6.9E-12 1.5E-16 137.4 21.5 238 673-913 49-300 (703)
237 PRK05137 tolB translocation pr 99.4 3.2E-11 6.9E-16 139.7 28.1 201 698-906 183-397 (435)
238 PRK00178 tolB translocation pr 99.4 7.4E-11 1.6E-15 136.6 30.1 232 656-896 180-428 (430)
239 KOG2314 Translation initiation 99.4 5.6E-11 1.2E-15 129.9 26.7 267 635-907 251-559 (698)
240 KOG0322 G-protein beta subunit 99.4 3.6E-12 7.8E-17 127.8 16.1 153 675-828 150-322 (323)
241 KOG2394 WD40 protein DMR-N9 [G 99.4 9.1E-12 2E-16 135.7 20.2 167 643-810 183-384 (636)
242 TIGR02658 TTQ_MADH_Hv methylam 99.4 4E-10 8.6E-15 123.7 32.8 256 655-913 27-328 (352)
243 PRK04792 tolB translocation pr 99.4 7.6E-11 1.6E-15 136.5 28.6 232 656-896 199-447 (448)
244 COG2706 3-carboxymuconate cycl 99.4 7.6E-10 1.7E-14 116.8 32.1 263 631-893 37-344 (346)
245 KOG2139 WD40 repeat protein [G 99.4 3E-11 6.5E-16 126.0 21.3 226 629-873 192-430 (445)
246 KOG1272 WD40-repeat-containing 99.4 7.1E-13 1.5E-17 141.9 9.2 228 675-913 129-360 (545)
247 KOG0974 WD-repeat protein WDR6 99.4 1.2E-11 2.5E-16 144.8 19.6 264 632-913 6-286 (967)
248 PF08662 eIF2A: Eukaryotic tra 99.4 5.4E-11 1.2E-15 121.5 20.1 108 799-913 58-177 (194)
249 PRK01029 tolB translocation pr 99.3 6.8E-10 1.5E-14 127.7 30.1 236 655-897 165-426 (428)
250 PF08662 eIF2A: Eukaryotic tra 99.3 9.3E-11 2E-15 119.7 19.7 148 679-829 9-179 (194)
251 PRK04792 tolB translocation pr 99.3 3.1E-10 6.8E-15 131.4 25.8 218 628-854 212-446 (448)
252 KOG4594 Sequence-specific sing 99.3 9.8E-13 2.1E-17 131.9 4.1 66 5-71 13-78 (354)
253 PRK00178 tolB translocation pr 99.3 4.2E-10 9.2E-15 130.3 26.4 220 626-854 191-427 (430)
254 TIGR02800 propeller_TolB tol-p 99.3 6.5E-10 1.4E-14 128.3 27.3 202 698-907 171-386 (417)
255 KOG2315 Predicted translation 99.3 7.2E-10 1.6E-14 122.2 25.8 246 637-895 129-410 (566)
256 PRK01029 tolB translocation pr 99.3 1.1E-09 2.4E-14 125.9 27.0 212 698-913 166-401 (428)
257 COG5354 Uncharacterized protei 99.3 9.2E-10 2E-14 119.9 24.3 273 628-913 27-346 (561)
258 KOG0280 Uncharacterized conser 99.3 3.5E-10 7.6E-15 115.4 19.4 242 631-912 67-330 (339)
259 KOG4547 WD40 repeat-containing 99.3 7.2E-10 1.6E-14 123.2 23.0 184 643-830 3-221 (541)
260 KOG2041 WD40 repeat protein [G 99.3 6.9E-10 1.5E-14 124.1 22.7 274 632-911 13-333 (1189)
261 TIGR02658 TTQ_MADH_Hv methylam 99.2 2.2E-08 4.8E-13 110.0 34.3 247 622-880 36-336 (352)
262 KOG4190 Uncharacterized conser 99.2 6.2E-11 1.3E-15 128.7 12.5 278 625-911 727-1032(1034)
263 KOG0309 Conserved WD40 repeat- 99.2 5.5E-11 1.2E-15 133.4 12.4 278 633-913 24-337 (1081)
264 COG2706 3-carboxymuconate cycl 99.2 1.9E-08 4.2E-13 106.4 30.7 259 654-912 15-318 (346)
265 TIGR03300 assembly_YfgL outer 99.2 6.9E-09 1.5E-13 118.0 29.0 254 644-913 104-377 (377)
266 KOG1354 Serine/threonine prote 99.2 7.3E-10 1.6E-14 115.1 18.4 238 674-913 24-357 (433)
267 KOG0280 Uncharacterized conser 99.2 6.6E-10 1.4E-14 113.4 17.2 195 635-829 123-333 (339)
268 TIGR03300 assembly_YfgL outer 99.2 2.1E-08 4.6E-13 114.1 31.1 255 644-913 64-336 (377)
269 KOG0974 WD-repeat protein WDR6 99.2 1.2E-09 2.7E-14 128.1 20.5 194 633-831 87-290 (967)
270 COG4946 Uncharacterized protei 99.2 3.2E-08 7E-13 106.8 28.4 285 609-904 203-507 (668)
271 KOG4547 WD40 repeat-containing 99.1 1.4E-09 3E-14 121.0 18.5 201 685-912 3-217 (541)
272 COG5170 CDC55 Serine/threonine 99.1 6.3E-10 1.4E-14 113.9 14.5 237 632-872 25-365 (460)
273 KOG2314 Translation initiation 99.1 1.6E-08 3.4E-13 111.1 25.7 269 636-913 213-523 (698)
274 PF04762 IKI3: IKI3 family; I 99.1 5.7E-08 1.2E-12 120.5 33.7 280 631-913 73-454 (928)
275 PLN02919 haloacid dehalogenase 99.1 5.7E-08 1.2E-12 122.7 32.7 232 679-913 571-886 (1057)
276 PLN02919 haloacid dehalogenase 99.1 8.8E-08 1.9E-12 121.1 33.7 239 637-878 571-892 (1057)
277 PRK04043 tolB translocation pr 99.0 8.6E-08 1.9E-12 109.7 26.7 190 635-829 189-400 (419)
278 KOG1064 RAVE (regulator of V-A 99.0 1.4E-09 3.1E-14 132.5 12.3 208 687-913 2180-2396(2439)
279 PRK04043 tolB translocation pr 99.0 2.6E-07 5.6E-12 105.8 30.0 224 655-890 169-416 (419)
280 PF04762 IKI3: IKI3 family; I 99.0 7.2E-07 1.6E-11 110.9 35.5 257 628-906 205-507 (928)
281 KOG1912 WD40 repeat protein [G 99.0 5.5E-08 1.2E-12 110.5 23.1 214 615-829 37-304 (1062)
282 KOG1064 RAVE (regulator of V-A 99.0 2.3E-09 4.9E-14 130.8 12.5 223 629-908 2204-2439(2439)
283 COG4946 Uncharacterized protei 99.0 1.7E-07 3.8E-12 101.2 25.4 145 631-778 357-508 (668)
284 KOG1832 HIV-1 Vpr-binding prot 99.0 4.9E-10 1.1E-14 127.9 6.3 262 622-903 1090-1377(1516)
285 KOG0309 Conserved WD40 repeat- 99.0 1.9E-09 4.1E-14 121.3 10.0 218 613-830 94-340 (1081)
286 KOG4532 WD40-like repeat conta 98.9 1.8E-07 4E-12 94.6 21.1 246 654-906 51-323 (344)
287 KOG1409 Uncharacterized conser 98.9 2.8E-08 6.2E-13 103.6 15.5 244 665-913 14-268 (404)
288 KOG1912 WD40 repeat protein [G 98.9 9E-08 1.9E-12 108.9 19.5 236 634-875 16-305 (1062)
289 COG5170 CDC55 Serine/threonine 98.9 1.3E-08 2.8E-13 104.4 11.3 234 674-913 25-307 (460)
290 PF08450 SGL: SMP-30/Gluconola 98.9 6.5E-06 1.4E-10 87.7 32.7 214 638-863 4-244 (246)
291 PF13360 PQQ_2: PQQ-like domai 98.9 1.3E-06 2.7E-11 92.4 27.0 214 653-879 1-235 (238)
292 KOG4190 Uncharacterized conser 98.8 9.3E-09 2E-13 112.1 9.8 205 668-879 728-953 (1034)
293 PRK11138 outer membrane biogen 98.8 1.3E-06 2.9E-11 99.9 27.6 252 645-913 120-392 (394)
294 KOG0882 Cyclophilin-related pe 98.8 6.7E-08 1.4E-12 104.0 15.2 247 611-884 31-315 (558)
295 PF07433 DUF1513: Protein of u 98.8 3.6E-06 7.9E-11 89.6 27.9 246 635-906 6-277 (305)
296 KOG2041 WD40 repeat protein [G 98.8 2.8E-07 6E-12 103.8 20.3 231 622-861 60-325 (1189)
297 PF08450 SGL: SMP-30/Gluconola 98.8 8.3E-06 1.8E-10 86.9 31.1 213 680-902 4-242 (246)
298 KOG4532 WD40-like repeat conta 98.8 5.3E-07 1.1E-11 91.4 19.9 196 696-898 51-263 (344)
299 KOG1645 RING-finger-containing 98.8 2E-07 4.3E-12 99.3 17.6 247 657-913 175-459 (463)
300 PF15492 Nbas_N: Neuroblastoma 98.8 4.4E-06 9.5E-11 86.4 25.3 231 639-913 3-257 (282)
301 PRK11138 outer membrane biogen 98.7 2E-06 4.4E-11 98.4 25.3 253 645-913 69-351 (394)
302 KOG3914 WD repeat protein WDR4 98.7 7.9E-08 1.7E-12 102.7 11.3 119 637-758 111-232 (390)
303 KOG1645 RING-finger-containing 98.6 9.3E-07 2E-11 94.3 16.9 245 622-874 182-461 (463)
304 KOG2695 WD40 repeat protein [G 98.6 9.6E-08 2.1E-12 99.8 9.2 167 639-809 217-401 (425)
305 KOG1275 PAB-dependent poly(A) 98.6 1.3E-06 2.9E-11 101.4 18.5 175 733-913 149-340 (1118)
306 KOG1832 HIV-1 Vpr-binding prot 98.6 3.2E-08 7E-13 113.4 5.1 201 664-879 1090-1296(1516)
307 PF04053 Coatomer_WDAD: Coatom 98.6 9.5E-06 2.1E-10 92.7 25.2 224 671-912 28-259 (443)
308 KOG4714 Nucleoporin [Nuclear s 98.6 7.8E-07 1.7E-11 89.9 14.2 193 636-830 39-255 (319)
309 KOG1920 IkappaB kinase complex 98.6 9.1E-06 2E-10 97.7 25.3 241 632-877 67-325 (1265)
310 KOG4714 Nucleoporin [Nuclear s 98.6 7.4E-07 1.6E-11 90.0 13.6 165 624-789 80-255 (319)
311 PF13360 PQQ_2: PQQ-like domai 98.6 1.1E-05 2.4E-10 85.1 23.8 209 696-913 2-228 (238)
312 PF00930 DPPIV_N: Dipeptidyl p 98.6 3.3E-05 7.2E-10 87.0 28.6 256 642-904 1-346 (353)
313 KOG3914 WD repeat protein WDR4 98.6 1.8E-06 4E-11 92.4 16.2 158 635-797 64-232 (390)
314 KOG4649 PQQ (pyrrolo-quinoline 98.5 6.1E-05 1.3E-09 76.5 25.9 255 644-913 62-349 (354)
315 PF14583 Pectate_lyase22: Olig 98.5 5.8E-05 1.3E-09 82.9 28.1 267 639-912 41-378 (386)
316 PF15492 Nbas_N: Neuroblastoma 98.5 2E-05 4.3E-10 81.6 22.3 189 634-831 44-261 (282)
317 KOG0882 Cyclophilin-related pe 98.5 1.3E-06 2.8E-11 94.3 13.2 232 674-907 8-298 (558)
318 KOG2066 Vacuolar assembly/sort 98.5 3.1E-06 6.6E-11 97.7 17.1 181 633-830 39-234 (846)
319 cd00216 PQQ_DH Dehydrogenases 98.5 6.3E-05 1.4E-09 88.4 28.1 256 645-913 61-422 (488)
320 KOG3621 WD40 repeat-containing 98.5 2.3E-05 5E-10 89.6 22.7 274 632-911 32-349 (726)
321 PRK02888 nitrous-oxide reducta 98.5 3.4E-05 7.5E-10 89.3 24.4 226 643-875 139-405 (635)
322 KOG1275 PAB-dependent poly(A) 98.4 4.9E-06 1.1E-10 96.9 16.9 182 686-872 146-340 (1118)
323 PF02897 Peptidase_S9_N: Proly 98.4 0.00041 8.8E-09 80.0 31.9 239 636-881 126-411 (414)
324 KOG1008 Uncharacterized conser 98.3 2.9E-07 6.2E-12 103.3 4.1 241 632-873 55-334 (783)
325 PF07433 DUF1513: Protein of u 98.3 0.00013 2.9E-09 77.8 23.8 192 719-913 5-245 (305)
326 KOG3617 WD40 and TPR repeat-co 98.3 8.7E-06 1.9E-10 93.7 15.6 109 637-749 19-131 (1416)
327 PF00400 WD40: WD domain, G-be 98.3 1.7E-06 3.7E-11 63.3 6.8 38 624-661 2-39 (39)
328 PF06433 Me-amine-dh_H: Methyl 98.3 0.00068 1.5E-08 73.3 29.0 255 655-913 17-318 (342)
329 KOG2114 Vacuolar assembly/sort 98.3 0.00015 3.4E-09 84.6 25.3 191 635-829 27-243 (933)
330 KOG2114 Vacuolar assembly/sort 98.3 0.00011 2.4E-09 85.7 23.0 203 682-889 30-260 (933)
331 PF00400 WD40: WD domain, G-be 98.3 2E-06 4.2E-11 63.0 6.0 39 665-703 1-39 (39)
332 KOG2695 WD40 repeat protein [G 98.3 2.9E-06 6.3E-11 88.9 8.8 159 735-894 228-401 (425)
333 PF11768 DUF3312: Protein of u 98.3 0.0011 2.4E-08 75.4 29.8 90 822-913 237-327 (545)
334 PF08513 LisH: LisH; InterPro 98.3 1.1E-06 2.3E-11 58.3 3.5 27 10-36 1-27 (27)
335 PRK02888 nitrous-oxide reducta 98.2 0.00038 8.2E-09 80.9 25.5 182 726-913 200-402 (635)
336 COG3391 Uncharacterized conser 98.2 0.0016 3.4E-08 74.1 30.6 252 657-911 13-279 (381)
337 COG0823 TolB Periplasmic compo 98.2 0.00016 3.4E-09 82.6 22.3 190 708-902 182-386 (425)
338 PF06977 SdiA-regulated: SdiA- 98.2 0.0009 1.9E-08 70.6 26.0 198 626-826 14-247 (248)
339 KOG2066 Vacuolar assembly/sort 98.2 7.2E-05 1.6E-09 86.7 18.7 138 643-788 81-233 (846)
340 KOG1920 IkappaB kinase complex 98.2 0.00025 5.3E-09 85.9 23.9 226 675-912 68-319 (1265)
341 COG0823 TolB Periplasmic compo 98.2 0.00022 4.7E-09 81.5 22.1 194 665-866 182-391 (425)
342 cd00216 PQQ_DH Dehydrogenases 98.1 0.0011 2.4E-08 78.0 28.4 242 646-898 111-450 (488)
343 PF04053 Coatomer_WDAD: Coatom 98.1 0.00057 1.2E-08 78.4 24.8 222 629-874 28-262 (443)
344 KOG4649 PQQ (pyrrolo-quinoline 98.1 0.0027 5.8E-08 64.9 25.6 140 645-789 23-166 (354)
345 PF06433 Me-amine-dh_H: Methyl 98.1 0.0033 7.1E-08 68.2 28.1 237 637-882 39-328 (342)
346 COG3391 Uncharacterized conser 98.1 0.001 2.2E-08 75.6 25.8 219 634-855 74-309 (381)
347 PF00930 DPPIV_N: Dipeptidyl p 98.0 0.00099 2.1E-08 75.1 24.6 227 633-864 42-347 (353)
348 PF06977 SdiA-regulated: SdiA- 98.0 0.0016 3.6E-08 68.6 23.1 197 713-912 16-247 (248)
349 PF08596 Lgl_C: Lethal giant l 98.0 0.0021 4.6E-08 72.7 25.2 258 635-905 3-326 (395)
350 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.9 0.0086 1.9E-07 70.9 30.9 184 645-833 69-337 (527)
351 PF00780 CNH: CNH domain; Int 97.9 0.0085 1.8E-07 64.8 27.6 222 643-880 5-261 (275)
352 KOG3617 WD40 and TPR repeat-co 97.9 0.00023 5.1E-09 82.3 15.1 70 636-705 62-131 (1416)
353 PF00780 CNH: CNH domain; Int 97.9 0.0048 1E-07 66.8 25.0 214 685-913 5-253 (275)
354 PF04841 Vps16_N: Vps16, N-ter 97.8 0.016 3.6E-07 66.3 30.0 188 656-856 62-271 (410)
355 PF08596 Lgl_C: Lethal giant l 97.8 0.00029 6.2E-09 79.7 15.4 228 622-872 75-336 (395)
356 COG5276 Uncharacterized conser 97.8 0.043 9.2E-07 57.5 29.4 271 633-913 86-367 (370)
357 PF03178 CPSF_A: CPSF A subuni 97.8 0.0021 4.5E-08 71.5 22.0 207 698-911 3-261 (321)
358 PRK10115 protease 2; Provision 97.8 0.038 8.3E-07 67.6 34.2 238 635-879 128-399 (686)
359 PF11768 DUF3312: Protein of u 97.8 0.00015 3.2E-09 82.2 11.5 74 631-706 257-330 (545)
360 KOG1008 Uncharacterized conser 97.8 8.9E-06 1.9E-10 91.6 1.6 196 676-875 57-276 (783)
361 PF02897 Peptidase_S9_N: Proly 97.8 0.015 3.2E-07 67.2 28.2 217 678-898 126-383 (414)
362 PF08553 VID27: VID27 cytoplas 97.8 0.0047 1E-07 74.7 24.3 212 688-902 494-759 (794)
363 PF14583 Pectate_lyase22: Olig 97.7 0.0066 1.4E-07 67.1 23.3 240 661-906 16-303 (386)
364 COG3386 Gluconolactonase [Carb 97.7 0.0099 2.1E-07 64.9 24.8 215 681-903 30-273 (307)
365 PF04841 Vps16_N: Vps16, N-ter 97.7 0.013 2.7E-07 67.3 25.1 188 698-898 62-272 (410)
366 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.6 0.048 1E-06 64.6 29.9 145 646-793 121-338 (527)
367 KOG4640 Anaphase-promoting com 97.6 0.00028 6E-09 80.1 9.5 96 632-728 19-115 (665)
368 PF03178 CPSF_A: CPSF A subuni 97.5 0.026 5.6E-07 62.7 25.1 211 656-871 3-262 (321)
369 PRK10115 protease 2; Provision 97.5 0.077 1.7E-06 65.0 30.9 201 676-882 127-354 (686)
370 PRK13616 lipoprotein LpqB; Pro 97.5 0.0097 2.1E-07 71.0 21.3 192 674-870 348-564 (591)
371 COG3386 Gluconolactonase [Carb 97.4 0.022 4.7E-07 62.3 21.8 186 632-820 64-275 (307)
372 KOG2395 Protein involved in va 97.4 0.0031 6.8E-08 70.4 14.9 134 771-907 346-493 (644)
373 COG3490 Uncharacterized protei 97.4 0.032 7E-07 58.1 20.9 229 637-872 71-346 (366)
374 KOG1897 Damage-specific DNA bi 97.3 0.18 3.9E-06 60.9 29.3 270 634-911 584-894 (1096)
375 PF15390 DUF4613: Domain of un 97.3 0.043 9.3E-07 62.7 23.2 118 634-751 57-188 (671)
376 KOG3621 WD40 repeat-containing 97.3 0.0077 1.7E-07 69.6 17.5 104 632-737 75-187 (726)
377 PF14727 PHTB1_N: PTHB1 N-term 97.3 0.24 5.3E-06 56.3 28.7 260 645-911 37-356 (418)
378 PF05694 SBP56: 56kDa selenium 97.3 0.069 1.5E-06 59.6 23.4 219 644-864 86-393 (461)
379 PF05096 Glu_cyclase_2: Glutam 97.3 0.29 6.3E-06 51.6 26.8 192 622-821 32-251 (264)
380 PF14655 RAB3GAP2_N: Rab3 GTPa 97.2 0.13 2.7E-06 58.4 25.7 88 638-727 6-117 (415)
381 PF07995 GSDH: Glucose / Sorbo 97.2 0.15 3.2E-06 56.9 26.4 66 845-910 253-330 (331)
382 PRK13616 lipoprotein LpqB; Pro 97.2 0.049 1.1E-06 65.1 23.3 186 717-910 348-563 (591)
383 PF05096 Glu_cyclase_2: Glutam 97.2 0.17 3.6E-06 53.4 24.3 192 667-865 35-251 (264)
384 KOG4499 Ca2+-binding protein R 97.2 0.078 1.7E-06 53.8 20.7 204 689-895 29-263 (310)
385 PF08553 VID27: VID27 cytoplas 97.2 0.0065 1.4E-07 73.5 15.2 126 779-906 503-639 (794)
386 COG3204 Uncharacterized protei 97.1 0.1 2.2E-06 55.0 21.7 191 629-821 81-304 (316)
387 smart00320 WD40 WD40 repeats. 97.1 0.0013 2.8E-08 46.0 5.6 38 624-661 3-40 (40)
388 PHA02713 hypothetical protein; 97.1 0.038 8.2E-07 66.1 20.7 217 656-879 273-538 (557)
389 PF14783 BBS2_Mid: Ciliary BBS 97.0 0.022 4.7E-07 51.6 13.8 101 636-744 2-109 (111)
390 smart00320 WD40 WD40 repeats. 97.0 0.0018 3.8E-08 45.3 5.5 39 665-703 2-40 (40)
391 KOG4499 Ca2+-binding protein R 97.0 0.089 1.9E-06 53.4 18.9 133 675-810 108-263 (310)
392 PF14783 BBS2_Mid: Ciliary BBS 97.0 0.044 9.6E-07 49.6 15.3 100 803-911 2-110 (111)
393 KOG4441 Proteins containing BT 96.9 0.038 8.3E-07 66.0 19.0 229 643-879 283-551 (571)
394 KOG2395 Protein involved in va 96.9 0.016 3.4E-07 65.0 14.2 141 686-829 344-500 (644)
395 KOG4441 Proteins containing BT 96.9 0.041 8.8E-07 65.7 18.9 216 687-908 285-534 (571)
396 PF10647 Gmad1: Lipoprotein Lp 96.8 0.35 7.6E-06 51.6 23.3 184 720-903 25-226 (253)
397 TIGR02604 Piru_Ver_Nterm putat 96.8 0.71 1.5E-05 52.3 27.1 102 634-737 14-142 (367)
398 COG3490 Uncharacterized protei 96.7 0.12 2.5E-06 54.1 17.9 169 727-905 44-245 (366)
399 PF14727 PHTB1_N: PTHB1 N-term 96.7 1.5 3.3E-05 49.9 28.8 222 687-913 37-316 (418)
400 TIGR03074 PQQ_membr_DH membran 96.7 0.56 1.2E-05 57.7 27.2 112 645-759 194-354 (764)
401 KOG2444 WD40 repeat protein [G 96.7 0.0017 3.6E-08 65.6 4.6 139 689-831 32-179 (238)
402 COG5276 Uncharacterized conser 96.7 1.1 2.4E-05 47.3 25.2 252 610-874 106-369 (370)
403 COG3204 Uncharacterized protei 96.7 0.25 5.5E-06 52.2 19.9 200 671-901 81-299 (316)
404 PRK13684 Ycf48-like protein; P 96.6 1.7 3.6E-05 48.5 28.2 267 633-913 45-329 (334)
405 KOG1897 Damage-specific DNA bi 96.6 2.9 6.2E-05 51.1 31.0 240 633-878 353-619 (1096)
406 PHA02713 hypothetical protein; 96.6 0.15 3.3E-06 61.0 20.6 177 730-913 303-531 (557)
407 PF14870 PSII_BNR: Photosynthe 96.6 1.4 3E-05 48.1 26.0 267 633-912 16-301 (302)
408 KOG2377 Uncharacterized conser 96.6 0.16 3.6E-06 56.1 18.4 119 632-752 65-188 (657)
409 PF14870 PSII_BNR: Photosynthe 96.5 1.7 3.7E-05 47.4 29.5 220 675-906 16-253 (302)
410 KOG2079 Vacuolar assembly/sort 96.5 0.038 8.3E-07 66.9 14.3 101 644-748 98-202 (1206)
411 PF10214 Rrn6: RNA polymerase 96.4 1.1 2.5E-05 55.7 27.6 178 673-875 77-277 (765)
412 COG4257 Vgb Streptogramin lyas 96.4 1.5 3.2E-05 46.0 23.0 235 635-882 63-313 (353)
413 KOG4640 Anaphase-promoting com 96.4 0.015 3.3E-07 66.5 9.7 79 675-756 20-99 (665)
414 PF14655 RAB3GAP2_N: Rab3 GTPa 96.4 0.21 4.5E-06 56.7 18.7 42 761-802 310-351 (415)
415 COG1520 FOG: WD40-like repeat 96.3 2.7 5.8E-05 47.6 30.1 149 643-796 67-225 (370)
416 COG4257 Vgb Streptogramin lyas 96.2 0.86 1.9E-05 47.7 20.3 210 678-901 64-291 (353)
417 smart00667 LisH Lissencephaly 96.1 0.0084 1.8E-07 42.0 4.0 31 9-39 3-33 (34)
418 PF02333 Phytase: Phytase; In 96.0 2.2 4.7E-05 47.8 24.3 186 643-831 66-292 (381)
419 TIGR03074 PQQ_membr_DH membran 95.9 0.78 1.7E-05 56.5 22.0 66 733-798 262-354 (764)
420 PF15390 DUF4613: Domain of un 95.9 0.27 5.9E-06 56.4 16.4 171 719-896 20-213 (671)
421 smart00036 CNH Domain found in 95.9 3.7 8E-05 45.1 28.5 229 644-882 12-278 (302)
422 TIGR03118 PEPCTERM_chp_1 conse 95.8 3.3 7.1E-05 44.4 25.6 197 635-832 24-282 (336)
423 PHA03098 kelch-like protein; P 95.8 0.32 6.9E-06 58.2 18.4 152 730-885 342-522 (534)
424 PF05694 SBP56: 56kDa selenium 95.8 4.4 9.6E-05 45.7 29.6 218 686-904 86-392 (461)
425 KOG1916 Nuclear protein, conta 95.8 0.0042 9.1E-08 73.1 2.0 120 628-751 127-257 (1283)
426 KOG2444 WD40 repeat protein [G 95.8 0.023 4.9E-07 57.6 6.8 134 649-790 34-168 (238)
427 PF10168 Nup88: Nuclear pore c 95.7 0.77 1.7E-05 56.1 20.5 27 633-659 84-110 (717)
428 KOG3630 Nuclear pore complex, 95.6 0.45 9.8E-06 58.3 17.7 140 635-777 102-262 (1405)
429 PF10647 Gmad1: Lipoprotein Lp 95.6 1.9 4.2E-05 45.9 21.2 154 635-821 25-186 (253)
430 PLN02153 epithiospecifier prot 95.5 1.2 2.7E-05 49.8 20.4 173 731-906 86-324 (341)
431 PLN00033 photosystem II stabil 95.4 6.6 0.00014 44.8 34.1 109 800-912 280-396 (398)
432 COG3823 Glutamine cyclotransfe 95.4 0.53 1.2E-05 47.2 14.4 176 686-863 55-247 (262)
433 PHA03098 kelch-like protein; P 95.4 0.56 1.2E-05 56.1 18.0 183 643-831 293-513 (534)
434 COG1520 FOG: WD40-like repeat 95.2 7.1 0.00015 44.2 28.6 187 688-879 69-273 (370)
435 KOG2079 Vacuolar assembly/sort 95.2 0.25 5.4E-06 60.2 13.8 72 631-704 128-202 (1206)
436 PF10168 Nup88: Nuclear pore c 95.1 3.5 7.7E-05 50.5 23.7 94 675-789 84-180 (717)
437 KOG3630 Nuclear pore complex, 95.1 0.19 4.1E-06 61.4 12.3 142 677-819 102-262 (1405)
438 COG5167 VID27 Protein involved 95.1 0.48 1E-05 53.3 14.4 140 686-829 478-632 (776)
439 PRK13684 Ycf48-like protein; P 95.1 4.9 0.00011 44.8 23.1 147 675-827 172-329 (334)
440 COG3823 Glutamine cyclotransfe 95.0 1.3 2.7E-05 44.7 15.6 171 644-821 55-249 (262)
441 TIGR02604 Piru_Ver_Nterm putat 95.0 0.97 2.1E-05 51.2 17.6 104 801-906 72-204 (367)
442 PLN02193 nitrile-specifier pro 94.9 11 0.00023 44.3 30.0 172 731-906 176-387 (470)
443 KOG2247 WD40 repeat-containing 94.8 0.0096 2.1E-07 66.1 0.7 139 678-819 37-178 (615)
444 PF03022 MRJP: Major royal jel 94.8 5.8 0.00013 43.2 22.2 186 698-904 35-254 (287)
445 PF12894 Apc4_WD40: Anaphase-p 94.8 0.083 1.8E-06 40.2 5.5 33 633-666 11-43 (47)
446 KOG2280 Vacuolar assembly/sort 94.7 2.2 4.7E-05 50.6 19.2 191 633-831 43-248 (829)
447 TIGR03548 mutarot_permut cycli 94.7 2.7 5.8E-05 46.6 19.8 100 731-831 73-196 (323)
448 PF07995 GSDH: Glucose / Sorbo 94.6 3.3 7.3E-05 46.1 20.4 77 792-869 245-330 (331)
449 PF14761 HPS3_N: Hermansky-Pud 94.6 4.4 9.5E-05 41.4 19.0 56 646-702 29-92 (215)
450 PF10433 MMS1_N: Mono-function 94.6 13 0.00028 44.1 28.2 246 642-895 219-503 (504)
451 KOG1916 Nuclear protein, conta 94.3 0.052 1.1E-06 64.4 5.0 119 635-754 185-328 (1283)
452 PF12234 Rav1p_C: RAVE protein 94.2 0.92 2E-05 54.0 15.2 125 622-749 18-156 (631)
453 COG1770 PtrB Protease II [Amin 94.2 16 0.00035 43.4 24.9 198 677-879 130-353 (682)
454 PF10395 Utp8: Utp8 family; I 94.1 12 0.00026 44.9 23.8 151 757-913 128-303 (670)
455 KOG4659 Uncharacterized conser 94.0 17 0.00037 45.9 25.1 134 570-706 284-428 (1899)
456 PF12234 Rav1p_C: RAVE protein 93.9 1.6 3.5E-05 52.0 16.4 108 802-913 31-154 (631)
457 KOG2377 Uncharacterized conser 93.9 4.1 8.8E-05 45.6 18.1 135 652-789 40-186 (657)
458 PHA02790 Kelch-like protein; P 93.7 1.5 3.3E-05 51.5 16.1 178 644-830 271-471 (480)
459 PF13449 Phytase-like: Esteras 93.7 12 0.00025 41.7 22.2 142 719-862 20-232 (326)
460 TIGR03606 non_repeat_PQQ dehyd 93.5 18 0.00039 41.8 32.4 59 629-687 25-90 (454)
461 TIGR03547 muta_rot_YjhT mutatr 93.5 7.6 0.00016 43.4 20.7 40 867-906 291-331 (346)
462 COG3292 Predicted periplasmic 93.5 3.8 8.1E-05 47.3 17.4 267 633-911 164-443 (671)
463 PRK14131 N-acetylneuraminic ac 93.3 8.9 0.00019 43.5 21.0 14 742-755 190-203 (376)
464 KOG2280 Vacuolar assembly/sort 93.2 6.6 0.00014 46.8 19.3 175 697-879 64-251 (829)
465 PLN02193 nitrile-specifier pro 93.1 8.1 0.00018 45.3 20.8 148 730-881 228-417 (470)
466 PF12894 Apc4_WD40: Anaphase-p 93.1 0.29 6.3E-06 37.2 5.6 31 675-705 11-41 (47)
467 PF14761 HPS3_N: Hermansky-Pud 93.0 3.4 7.4E-05 42.2 14.8 55 766-821 23-80 (215)
468 PRK14131 N-acetylneuraminic ac 92.9 7.2 0.00016 44.3 19.5 39 868-906 314-353 (376)
469 COG4247 Phy 3-phytase (myo-ino 92.9 13 0.00029 38.6 21.1 191 636-829 58-288 (364)
470 PF10433 MMS1_N: Mono-function 92.9 21 0.00046 42.3 24.1 224 684-912 219-473 (504)
471 KOG4460 Nuclear pore complex, 92.5 12 0.00027 42.7 19.3 79 677-755 105-204 (741)
472 PLN02153 epithiospecifier prot 92.5 7.1 0.00015 43.6 18.5 40 866-905 217-260 (341)
473 COG1506 DAP2 Dipeptidyl aminop 92.4 23 0.00049 43.2 23.9 61 671-735 55-117 (620)
474 PF14781 BBS2_N: Ciliary BBSom 92.3 4.3 9.3E-05 38.2 13.3 116 679-796 2-133 (136)
475 PHA02790 Kelch-like protein; P 92.3 4.9 0.00011 47.3 17.5 167 731-906 272-456 (480)
476 PF10395 Utp8: Utp8 family; I 92.3 4.1 8.9E-05 48.6 16.3 163 633-797 129-314 (670)
477 PF08728 CRT10: CRT10; InterP 92.1 3.4 7.4E-05 49.8 15.6 168 687-873 49-245 (717)
478 PF07250 Glyoxal_oxid_N: Glyox 92.1 2.6 5.7E-05 44.3 13.2 129 782-910 48-194 (243)
479 KOG1900 Nuclear pore complex, 92.0 1.5 3.3E-05 55.0 12.9 161 652-831 96-274 (1311)
480 PF05935 Arylsulfotrans: Aryls 92.0 30 0.00066 40.6 24.0 114 681-799 153-312 (477)
481 KOG1898 Splicing factor 3b, su 92.0 8.4 0.00018 47.5 18.5 130 740-875 911-1049(1205)
482 TIGR03547 muta_rot_YjhT mutatr 91.9 24 0.00053 39.3 22.0 62 644-707 17-95 (346)
483 smart00036 CNH Domain found in 91.8 23 0.0005 38.8 25.3 195 632-831 41-272 (302)
484 TIGR03548 mutarot_permut cycli 91.6 9.4 0.0002 42.3 18.0 107 644-754 72-199 (323)
485 KOG4659 Uncharacterized conser 91.6 19 0.00042 45.5 21.0 24 798-821 659-682 (1899)
486 KOG2247 WD40 repeat-containing 91.6 0.022 4.7E-07 63.4 -3.0 141 762-908 38-181 (615)
487 PF08801 Nucleoporin_N: Nup133 91.6 8.5 0.00018 44.4 18.2 63 634-706 27-97 (422)
488 PRK05560 DNA gyrase subunit A; 91.5 47 0.001 41.7 25.9 255 640-897 493-793 (805)
489 COG5167 VID27 Protein involved 91.4 2.4 5.2E-05 47.9 12.3 126 778-906 488-624 (776)
490 KOG2109 WD40 repeat protein [G 90.8 0.51 1.1E-05 54.8 6.7 78 621-698 303-391 (788)
491 KOG1983 Tomosyn and related SN 90.8 6.2 0.00013 50.4 17.0 227 634-878 36-268 (993)
492 TIGR03118 PEPCTERM_chp_1 conse 90.5 28 0.00062 37.5 20.5 192 720-913 24-277 (336)
493 PF13449 Phytase-like: Esteras 90.2 34 0.00074 37.9 22.4 140 676-817 20-231 (326)
494 COG1506 DAP2 Dipeptidyl aminop 90.2 53 0.0011 40.1 26.1 61 629-692 55-117 (620)
495 KOG4460 Nuclear pore complex, 90.0 3.2 6.8E-05 47.2 11.7 28 803-830 168-199 (741)
496 KOG3616 Selective LIM binding 89.6 5.6 0.00012 46.9 13.6 176 634-831 15-195 (1636)
497 PF14781 BBS2_N: Ciliary BBSom 89.5 9.6 0.00021 36.0 12.8 113 637-754 2-130 (136)
498 PLN00033 photosystem II stabil 89.3 45 0.00098 38.1 25.5 108 760-871 282-396 (398)
499 COG1770 PtrB Protease II [Amin 89.2 56 0.0012 39.0 27.3 247 636-885 131-407 (682)
500 KOG1896 mRNA cleavage and poly 89.2 75 0.0016 40.4 25.1 261 648-912 877-1210(1366)
No 1
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.8e-45 Score=379.07 Aligned_cols=310 Identities=26% Similarity=0.447 Sum_probs=276.2
Q ss_pred ceEEEEcCCCcccc---CCCCeEEeCCCcchhhhcccccccCCccCceeeecccCCCCCCCCCCcccccccCccceeeeE
Q 002519 552 PLMMFGTDGAGTLT---SPSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANS 628 (913)
Q Consensus 552 ~~~~~s~dg~~~~~---~~~~~vWd~~~g~~~~~~~~~~~~g~~d~~v~~~~~~d~~~~~d~~~~~~~~~~~~~~~~~~~ 628 (913)
-++.|||+|.++++ +..++|||..+. ....+
T Consensus 119 l~~~fsp~g~~l~tGsGD~TvR~WD~~Te----------------------------------------------Tp~~t 152 (480)
T KOG0271|consen 119 LSVQFSPTGSRLVTGSGDTTVRLWDLDTE----------------------------------------------TPLFT 152 (480)
T ss_pred EEEEecCCCceEEecCCCceEEeeccCCC----------------------------------------------Cccee
Confidence 36789999998877 335588887653 24567
Q ss_pred eecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCcee-eEeccCCCCeEEEEECC-----CCCEEEEEeCCCeEEEE
Q 002519 629 VRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSK-TNLEEHSSLITDVRFSP-----SMPRLATSSFDKTVRVW 702 (913)
Q Consensus 629 l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~-~~l~~h~~~V~~l~fsp-----dg~~Lasgs~Dg~V~Iw 702 (913)
.++|...|.||+|+|||+.||+|+.||+|++||.++++.+ ..|.+|...|++|+|.| ..++||+++.||.|+||
T Consensus 153 ~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIW 232 (480)
T KOG0271|consen 153 CKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIW 232 (480)
T ss_pred ecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEE
Confidence 8899999999999999999999999999999999987765 67999999999999975 67799999999999999
Q ss_pred EcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeCCc---eEEE-----------Eec
Q 002519 703 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGT---AQMR-----------FQP 768 (913)
Q Consensus 703 dl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~---~~v~-----------~s~ 768 (913)
|+.. +.++..+.+|...|+|++|-. ..+|++|+.|++|++|+...|++.+.++++. +.++ |.+
T Consensus 233 d~~~-~~~~~~lsgHT~~VTCvrwGG--~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~ 309 (480)
T KOG0271|consen 233 DTKL-GTCVRTLSGHTASVTCVRWGG--EGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDH 309 (480)
T ss_pred EccC-ceEEEEeccCccceEEEEEcC--CceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhcccccc
Confidence 9987 789999999999999999974 4589999999999999999999988887753 3333 333
Q ss_pred CCC-------------------------EEEEEEcCCeEEEEECCCC-eEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-
Q 002519 769 HLG-------------------------RYLAAAAENVVSILDAETQ-ACRLSLQGHTKPIDSVCWDPSGELLASVSED- 821 (913)
Q Consensus 769 ~~~-------------------------~ll~~~~dg~I~i~D~~t~-~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d- 821 (913)
.+. .+++++.|.++.+|+.... +++..+.+|..-|+.+.|+||+++|++++-|
T Consensus 310 t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDk 389 (480)
T KOG0271|consen 310 TGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDK 389 (480)
T ss_pred ccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeeccc
Confidence 333 4888999999999987665 5888899999999999999999999999999
Q ss_pred eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEE
Q 002519 822 SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYV 900 (913)
Q Consensus 822 ~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~L 900 (913)
+|++||.+++ +.+..+.+|-..|+.++|+.|.++|++|+.|.++++||+++.++. .+.+|.+.|.++.|+|||..+
T Consensus 390 SVkLW~g~tG---k~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV 466 (480)
T KOG0271|consen 390 SVKLWDGRTG---KFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRV 466 (480)
T ss_pred ceeeeeCCCc---chhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCcee
Confidence 9999999988 788899999999999999999999999999999999999999987 888999999999999999999
Q ss_pred EEEeCCCcEEEeC
Q 002519 901 ASASHDKFVKLWK 913 (913)
Q Consensus 901 asgs~DG~I~IWd 913 (913)
++|+.|..++||.
T Consensus 467 ~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 467 ASGGKDKVLRLWR 479 (480)
T ss_pred ecCCCceEEEeec
Confidence 9999999999995
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.4e-43 Score=363.44 Aligned_cols=288 Identities=23% Similarity=0.393 Sum_probs=262.6
Q ss_pred eeeeEeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEE
Q 002519 624 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 703 (913)
Q Consensus 624 ~~~~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwd 703 (913)
.+-..+.+|.+.|.|+.|+|+|++||+|+.|.+|++||+.+....++.++|...|.||+|+|||+.||+|+.||+|++||
T Consensus 106 rCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwd 185 (480)
T KOG0271|consen 106 RCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWD 185 (480)
T ss_pred eeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEec
Confidence 45556889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCceeEEeccCCCCeEEEEEcCC----CCeEEEEEeCCCcEEEEEcCCCeeeEEeeCCceEEEEecCC--CEEEEEE
Q 002519 704 ADNPGYSLRTFMGHSASVMSLDFHPN----KDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHL--GRYLAAA 777 (913)
Q Consensus 704 l~~~~~~~~~~~~h~~~V~sl~fsp~----~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~s~~~--~~ll~~~ 777 (913)
.+++....+.+.+|...|++++|.|- ..++|++++.||.|+|||+..+.++..+.++...+.+...| +.+++++
T Consensus 186 pktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~gliySgS 265 (480)
T KOG0271|consen 186 PKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEGLIYSGS 265 (480)
T ss_pred CCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCceEEecC
Confidence 99988888999999999999999873 23478899999999999999999999998876655544443 6788888
Q ss_pred cCCeEEEEECCCCeEEEEecCCCCCeEEEEEc-----------CCC-------------------------CEEEEEeCC
Q 002519 778 AENVVSILDAETQACRLSLQGHTKPIDSVCWD-----------PSG-------------------------ELLASVSED 821 (913)
Q Consensus 778 ~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~s-----------pdg-------------------------~~l~s~s~d 821 (913)
.|++|++|+...+++..++++|...|+.++.+ |.+ +.+++|++|
T Consensus 266 ~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd 345 (480)
T KOG0271|consen 266 QDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDD 345 (480)
T ss_pred CCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCC
Confidence 99999999999999999999999999998876 223 359999999
Q ss_pred -eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCE
Q 002519 822 -SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGY 899 (913)
Q Consensus 822 -~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~ 899 (913)
++.+|+-... .+++....+|...|+.+.|+||+++|++++.|..|++||.++|+.+ .+.+|-..|+.++|+.|.++
T Consensus 346 ~tlflW~p~~~--kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRL 423 (480)
T KOG0271|consen 346 FTLFLWNPFKS--KKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRL 423 (480)
T ss_pred ceEEEeccccc--ccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccE
Confidence 9999997533 3678888899999999999999999999999999999999999988 88899999999999999999
Q ss_pred EEEEeCCCcEEEeC
Q 002519 900 VASASHDKFVKLWK 913 (913)
Q Consensus 900 Lasgs~DG~I~IWd 913 (913)
|++|+.|.+++|||
T Consensus 424 lVS~SkDsTLKvw~ 437 (480)
T KOG0271|consen 424 LVSGSKDSTLKVWD 437 (480)
T ss_pred EEEcCCCceEEEEE
Confidence 99999999999996
No 3
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2.8e-41 Score=353.13 Aligned_cols=287 Identities=27% Similarity=0.443 Sum_probs=266.3
Q ss_pred cceeeeEeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCC--CCEEEEEeCCCeE
Q 002519 622 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPS--MPRLATSSFDKTV 699 (913)
Q Consensus 622 ~~~~~~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspd--g~~Lasgs~Dg~V 699 (913)
.......--+.+.+|..+.||.|++.||||+.+|.++||+..+...+.+|.+|...|.++.|+|. +..||||+.||+|
T Consensus 164 ~~~l~~SQ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtv 243 (459)
T KOG0272|consen 164 SLELVCSQVGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTV 243 (459)
T ss_pred hhhhhhhhccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCce
Confidence 33444445577899999999999999999999999999999999999999999999999999997 5689999999999
Q ss_pred EEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeC---CceEEEEecCCCEEEEE
Q 002519 700 RVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAA 776 (913)
Q Consensus 700 ~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~s~~~~~ll~~ 776 (913)
++|++++ ..++..+.+|...|..++|+|+|++| +|++.|.+-++||++++..+...++ ++.+++|.++|..+++|
T Consensus 244 klw~~~~-e~~l~~l~gH~~RVs~VafHPsG~~L-~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tG 321 (459)
T KOG0272|consen 244 KLWKLSQ-ETPLQDLEGHLARVSRVAFHPSGKFL-GTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATG 321 (459)
T ss_pred eeeccCC-CcchhhhhcchhhheeeeecCCCcee-eecccccchhhcccccchhhHhhcccccccceeEecCCCceeecc
Confidence 9999997 67889999999999999999998855 5999999999999999987766555 56789999999999999
Q ss_pred EcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEeecCCCceEEEEEeC-
Q 002519 777 AAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHP- 854 (913)
Q Consensus 777 ~~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp- 854 (913)
+.|..-+|||+++++++..+.+|.+.|.+|.|+|+|..|++|+.| +++|||++.. .++..+..|.+-|+.+.|+|
T Consensus 322 GlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r---~~ly~ipAH~nlVS~Vk~~p~ 398 (459)
T KOG0272|consen 322 GLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMR---SELYTIPAHSNLVSQVKYSPQ 398 (459)
T ss_pred CccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeeccc---ccceecccccchhhheEeccc
Confidence 999999999999999999999999999999999999999999999 9999999876 56899999999999999998
Q ss_pred CCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 002519 855 TYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 913 (913)
Q Consensus 855 ~g~~l~s~s~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~Lasgs~DG~I~IWd 913 (913)
.|.+|++++.|++++||...+..++ .+.+|++.|.++++++|+.+|+|++.|.+|++|.
T Consensus 399 ~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 399 EGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred CCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 7889999999999999999999888 8899999999999999999999999999999995
No 4
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=5.3e-39 Score=321.88 Aligned_cols=291 Identities=20% Similarity=0.373 Sum_probs=263.7
Q ss_pred CccceeeeEeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeE
Q 002519 620 GFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTV 699 (913)
Q Consensus 620 ~~~~~~~~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V 699 (913)
...++..++|++|.++|+++.|++|.++|++++.||++.|||.-+...+..++-....|..++|+|.++++|+|+.|+..
T Consensus 42 ~i~~~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~C 121 (343)
T KOG0286|consen 42 RIQMRTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKC 121 (343)
T ss_pred eeeeeeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCcee
Confidence 34678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCC--C---ceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeCC---ceEEEEec-CC
Q 002519 700 RVWDADNP--G---YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG---TAQMRFQP-HL 770 (913)
Q Consensus 700 ~Iwdl~~~--~---~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~---~~~v~~s~-~~ 770 (913)
.||++.+. . ...+.+.+|.+.+.|+.|..|+ ++ ++++.|.++.+||++++..+..|.++ +..+.+.| ++
T Consensus 122 siy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~-~i-lT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ 199 (343)
T KOG0286|consen 122 SIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDN-HI-LTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDG 199 (343)
T ss_pred EEEecccccccccceeeeeecCccceeEEEEEcCCC-ce-EecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCC
Confidence 99999853 1 3467789999999999999854 44 49999999999999999999999876 45677889 88
Q ss_pred CEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEeecCCCceEE
Q 002519 771 GRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHS 849 (913)
Q Consensus 771 ~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~ 849 (913)
+.+++++.|+..++||++.+.++.+|.+|+..|++|+|.|+|.-|++|++| +.++||++...+. .+..-......|++
T Consensus 200 ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~-a~ys~~~~~~gitS 278 (343)
T KOG0286|consen 200 NTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQEL-AVYSHDSIICGITS 278 (343)
T ss_pred CeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEE-eeeccCcccCCcee
Confidence 999999999999999999999999999999999999999999999999999 9999999986332 22333334567999
Q ss_pred EEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 002519 850 CVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 913 (913)
Q Consensus 850 l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~Lasgs~DG~I~IWd 913 (913)
++|+..|++|++|..|..+.|||.-.++.+ .+.+|+..|.|+..+|||.-|++|+.|..|+||.
T Consensus 279 v~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 279 VAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred EEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 999999999999999999999998888777 8899999999999999999999999999999994
No 5
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=6.9e-37 Score=308.01 Aligned_cols=285 Identities=24% Similarity=0.421 Sum_probs=261.0
Q ss_pred eeEeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECC-CCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEc
Q 002519 626 ANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTD-TLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDA 704 (913)
Q Consensus 626 ~~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~-~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl 704 (913)
+..+.+|++.|+++.|+|+|.+||+|+.|..|.+|++. ..+....+++|++.|..+.|..|++.|++++.|++|+.||+
T Consensus 40 ~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~ 119 (338)
T KOG0265|consen 40 IMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDA 119 (338)
T ss_pred hhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEec
Confidence 44567999999999999999999999999999999965 56777889999999999999999999999999999999999
Q ss_pred CCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEe--eCCceEEEEecCCCEEEEEEcCCeE
Q 002519 705 DNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF--KGGTAQMRFQPHLGRYLAAAAENVV 782 (913)
Q Consensus 705 ~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~--~~~~~~v~~s~~~~~ll~~~~dg~I 782 (913)
++ ++.++.+++|...|++++-+.-|..++++++.|+++++||+++..+++++ +.....+.|.-.+..+++++-|+.|
T Consensus 120 ~t-G~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~i 198 (338)
T KOG0265|consen 120 ET-GKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDNDI 198 (338)
T ss_pred cc-ceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeeccccCce
Confidence 99 88899999999999999977778889999999999999999999999998 5577889999999999999999999
Q ss_pred EEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCC-CceEEEeecCCC----ceEEEEEeCCC
Q 002519 783 SILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSE-GECVHELSCNGN----KFHSCVFHPTY 856 (913)
Q Consensus 783 ~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~-~~~i~~~~~~~~----~i~~l~~sp~g 856 (913)
++||++..+..+++.+|.+.|+.+..+++|.++.+-+.| ++++||++.... ..|+..+.++.. ....|+|+|++
T Consensus 199 kvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~ 278 (338)
T KOG0265|consen 199 KVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNG 278 (338)
T ss_pred eeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCC
Confidence 999999999999999999999999999999999999999 999999986543 345666666533 35678999999
Q ss_pred CEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEE
Q 002519 857 PSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKL 911 (913)
Q Consensus 857 ~~l~s~s~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~Lasgs~DG~I~I 911 (913)
+.+-+|+.|..+++||.....++ .+.+|.+.|++++|+|...+|.+++.|++|++
T Consensus 279 ~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~l 334 (338)
T KOG0265|consen 279 TKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYL 334 (338)
T ss_pred CccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEe
Confidence 99999999999999999986655 89999999999999999999999999999986
No 6
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.5e-37 Score=325.17 Aligned_cols=244 Identities=25% Similarity=0.420 Sum_probs=230.4
Q ss_pred eeeeEeecCCCCEEEEEEecC--CCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEE
Q 002519 624 KEANSVRASTSKVICCHFSSD--GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRV 701 (913)
Q Consensus 624 ~~~~~l~~H~~~V~~l~fspd--g~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~I 701 (913)
..+.+|++|++.|.++.|+|. +..||+|+.||+|++|++++...+..+.+|...|..++|+|+|++|+|+|.|.+-|+
T Consensus 208 ~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRl 287 (459)
T KOG0272|consen 208 NLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRL 287 (459)
T ss_pred ceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhh
Confidence 456789999999999999996 679999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeCCc---eEEEEecCCCEEEEEEc
Q 002519 702 WDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGT---AQMRFQPHLGRYLAAAA 778 (913)
Q Consensus 702 wdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~---~~v~~s~~~~~ll~~~~ 778 (913)
||+++ +..+....||...|.+|+|++||. ++++|+.|..-+|||+++++++..+.+++ ..+.|+|+|-.+++|+.
T Consensus 288 WD~~t-k~ElL~QEGHs~~v~~iaf~~DGS-L~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~ 365 (459)
T KOG0272|consen 288 WDLET-KSELLLQEGHSKGVFSIAFQPDGS-LAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSS 365 (459)
T ss_pred ccccc-chhhHhhcccccccceeEecCCCc-eeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCC
Confidence 99998 666777889999999999999976 78899999999999999999999998764 57899999999999999
Q ss_pred CCeEEEEECCCCeEEEEecCCCCCeEEEEEcC-CCCEEEEEeCC-eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCC
Q 002519 779 ENVVSILDAETQACRLSLQGHTKPIDSVCWDP-SGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTY 856 (913)
Q Consensus 779 dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~sp-dg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g 856 (913)
|++++|||++...+++++.+|.+-|+.|+|+| .|.+|++++.| +++||.-++. .+++.+.+|+++|.+|.+++++
T Consensus 366 Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~---~~~ksLaGHe~kV~s~Dis~d~ 442 (459)
T KOG0272|consen 366 DNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTW---SPLKSLAGHEGKVISLDISPDS 442 (459)
T ss_pred CCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCc---ccchhhcCCccceEEEEeccCC
Confidence 99999999999999999999999999999999 78899999999 9999998766 8899999999999999999999
Q ss_pred CEEEEEEcCCeEEEEE
Q 002519 857 PSLLVIGCYQSLELWN 872 (913)
Q Consensus 857 ~~l~s~s~dg~I~iwd 872 (913)
.+|++++.|++|++|.
T Consensus 443 ~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 443 QAIATSSFDRTIKLWR 458 (459)
T ss_pred ceEEEeccCceeeecc
Confidence 9999999999999995
No 7
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=5.5e-35 Score=312.88 Aligned_cols=296 Identities=23% Similarity=0.373 Sum_probs=250.6
Q ss_pred ccccccCccceeeeEeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEec---cCCCCeEEEEECCCCCEE
Q 002519 614 GMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE---EHSSLITDVRFSPSMPRL 690 (913)
Q Consensus 614 ~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~---~h~~~V~~l~fspdg~~L 690 (913)
+..+.++.+||...+++.|..-|.|+.|+|||.++|+++.||+|.|||-.+++.+..|. +|.+.|.+|.|+||+..|
T Consensus 171 ~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~ 250 (603)
T KOG0318|consen 171 TVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQF 250 (603)
T ss_pred eEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceE
Confidence 44556788899999999999999999999999999999999999999999999999998 899999999999999999
Q ss_pred EEEeCCCeEEEEEcCCCC------------------------------------------ceeEEeccCCCCeEEEEEcC
Q 002519 691 ATSSFDKTVRVWDADNPG------------------------------------------YSLRTFMGHSASVMSLDFHP 728 (913)
Q Consensus 691 asgs~Dg~V~Iwdl~~~~------------------------------------------~~~~~~~~h~~~V~sl~fsp 728 (913)
+|++.|.+++|||+.+.. ..+..+.+|...|+++..++
T Consensus 251 ~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~ 330 (603)
T KOG0318|consen 251 LTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSP 330 (603)
T ss_pred EEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcC
Confidence 999999999999997521 11334458999999999999
Q ss_pred CCCeEEEEEeCCCcEEEEEcCCCeee-------------------------------EEe--------------------
Q 002519 729 NKDDLICSCDGDGEIRYWSINNGSCT-------------------------------RVF-------------------- 757 (913)
Q Consensus 729 ~~~~ll~sgs~Dg~I~iwdl~~~~~~-------------------------------~~~-------------------- 757 (913)
+++++ ++|+.||.|.-||+.++..- +.+
T Consensus 331 d~~~i-~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~ 409 (603)
T KOG0318|consen 331 DGKTI-YSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPK 409 (603)
T ss_pred CCCEE-EeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCce
Confidence 98655 59999999999998654311 000
Q ss_pred ----------------------e-----------CCceEEEEecCCCEEEEEEcCCeEEEEECCCCe--EEEEecCCCCC
Q 002519 758 ----------------------K-----------GGTAQMRFQPHLGRYLAAAAENVVSILDAETQA--CRLSLQGHTKP 802 (913)
Q Consensus 758 ----------------------~-----------~~~~~v~~s~~~~~ll~~~~dg~I~i~D~~t~~--~~~~l~~h~~~ 802 (913)
. -...+++++|++..+++++.|+.|+||.+.... ....+..|..+
T Consensus 410 ~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~ 489 (603)
T KOG0318|consen 410 GLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAA 489 (603)
T ss_pred eEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCC
Confidence 0 012346788999999999999999999998764 33456679999
Q ss_pred eEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE--
Q 002519 803 IDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-- 879 (913)
Q Consensus 803 V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~-- 879 (913)
|++++|+||+.||+++... .|.+||+.+... ....+..|..+|.+++|+|+..++++|+-|-.|.||+++.....
T Consensus 490 iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~--~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~ 567 (603)
T KOG0318|consen 490 ITDVAYSPDGAYLAAGDASRKVVLYDVASREV--KTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHII 567 (603)
T ss_pred ceEEEECCCCcEEEEeccCCcEEEEEcccCce--ecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhheE
Confidence 9999999999999999988 999999987644 44556668999999999999999999999999999999765433
Q ss_pred EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 002519 880 TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 913 (913)
Q Consensus 880 ~~~~h~~~V~~l~~spdg~~Lasgs~DG~I~IWd 913 (913)
...+|...|+.+.|-.+ ..|++.+.|-.|++|.
T Consensus 568 iknAH~~gVn~v~wlde-~tvvSsG~Da~iK~W~ 600 (603)
T KOG0318|consen 568 IKNAHLGGVNSVAWLDE-STVVSSGQDANIKVWN 600 (603)
T ss_pred eccccccCceeEEEecC-ceEEeccCcceeEEec
Confidence 55689999999999654 5788999999999995
No 8
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=5.8e-35 Score=291.53 Aligned_cols=284 Identities=21% Similarity=0.381 Sum_probs=244.9
Q ss_pred ceeeeEeecCCCCEEEEEEecC-CCEEEEEeCCCcEEEEECC-----CCceeeEeccCCCCeEEEEECCCCCEEEEEeCC
Q 002519 623 FKEANSVRASTSKVICCHFSSD-GKLLATGGHDKKAVLWHTD-----TLKSKTNLEEHSSLITDVRFSPSMPRLATSSFD 696 (913)
Q Consensus 623 ~~~~~~l~~H~~~V~~l~fspd-g~~Lasgs~Dg~V~vwd~~-----~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D 696 (913)
+....++++|++.|+.++..+. ...|++++.|++|.+|++. .|..++.+++|+..|..+..++|+.+.++++.|
T Consensus 5 l~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD 84 (315)
T KOG0279|consen 5 LVLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWD 84 (315)
T ss_pred heeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEecccc
Confidence 4566789999999999999886 5689999999999999875 467789999999999999999999999999999
Q ss_pred CeEEEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeC----CceEEEEecC--C
Q 002519 697 KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG----GTAQMRFQPH--L 770 (913)
Q Consensus 697 g~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~----~~~~v~~s~~--~ 770 (913)
+++|+||+.+ +...+.|.+|...|.+++|++|+..+ ++|+.|.+|++|++...-....... -+.+++|+|. .
T Consensus 85 ~~lrlWDl~~-g~~t~~f~GH~~dVlsva~s~dn~qi-vSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~ 162 (315)
T KOG0279|consen 85 GTLRLWDLAT-GESTRRFVGHTKDVLSVAFSTDNRQI-VSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESN 162 (315)
T ss_pred ceEEEEEecC-CcEEEEEEecCCceEEEEecCCCcee-ecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCC
Confidence 9999999998 68899999999999999999997755 5999999999999986544433333 3688999999 5
Q ss_pred CEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEeecCCCceEE
Q 002519 771 GRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHS 849 (913)
Q Consensus 771 ~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~ 849 (913)
..++.++.|++|++||+++.+....+.+|.+.++.++++|||.++++|+.| .+.+||++.+ +++..+. +...|.+
T Consensus 163 p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~---k~lysl~-a~~~v~s 238 (315)
T KOG0279|consen 163 PIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEG---KNLYSLE-AFDIVNS 238 (315)
T ss_pred cEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCC---ceeEecc-CCCeEee
Confidence 788889999999999999999999999999999999999999999999999 9999999877 4555544 4788999
Q ss_pred EEEeCCCCEEEEEEcCCeEEEEECCCCcEE-E----Eccc-----CCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 002519 850 CVFHPTYPSLLVIGCYQSLELWNMSENKTM-T----LTAH-----EGLIAALAVSTETGYVASASHDKFVKLWK 913 (913)
Q Consensus 850 l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~-~----~~~h-----~~~V~~l~~spdg~~Lasgs~DG~I~IWd 913 (913)
|+|+|+.- .++...+..|+|||+.++.++ . +.+. .....+++|+.||..|++|-.|+.|++|.
T Consensus 239 l~fspnry-wL~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~q 311 (315)
T KOG0279|consen 239 LCFSPNRY-WLCAATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQ 311 (315)
T ss_pred EEecCCce-eEeeccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEE
Confidence 99999865 445555567999999998876 1 1122 23456789999999999999999999994
No 9
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=8.9e-36 Score=305.17 Aligned_cols=288 Identities=23% Similarity=0.395 Sum_probs=264.2
Q ss_pred CccceeeeEeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeE
Q 002519 620 GFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTV 699 (913)
Q Consensus 620 ~~~~~~~~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V 699 (913)
...++..+.+.+|.+.|.|+++.|...+|++|+.|++|+|||+.++....++.+|...|..|++++-..||++++.|+.|
T Consensus 138 HapwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~V 217 (460)
T KOG0285|consen 138 HAPWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQV 217 (460)
T ss_pred cCcceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCee
Confidence 44789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeCC---ceEEEEecCCCEEEEE
Q 002519 700 RVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG---TAQMRFQPHLGRYLAA 776 (913)
Q Consensus 700 ~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~---~~~v~~s~~~~~ll~~ 776 (913)
+.||++. .+.++.+.||-..|.|++.+|.-+ +|++|+.|.++++||+++...+..+.++ +..+.+.+.+..++++
T Consensus 218 KCwDLe~-nkvIR~YhGHlS~V~~L~lhPTld-vl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~ 295 (460)
T KOG0285|consen 218 KCWDLEY-NKVIRHYHGHLSGVYCLDLHPTLD-VLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITG 295 (460)
T ss_pred EEEechh-hhhHHHhccccceeEEEeccccce-eEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEe
Confidence 9999997 788999999999999999999865 5669999999999999999999998875 4567788889999999
Q ss_pred EcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCCceEEEeecCCCceEEEEEeCCC
Q 002519 777 AAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTY 856 (913)
Q Consensus 777 ~~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g 856 (913)
+.|++|++||++.++...++..|...|.+++.+|....|++++.|.|+-|++..+ ..+..+.+|...|.+++...|+
T Consensus 296 S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dnik~w~~p~g---~f~~nlsgh~~iintl~~nsD~ 372 (460)
T KOG0285|consen 296 SHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDNIKQWKLPEG---EFLQNLSGHNAIINTLSVNSDG 372 (460)
T ss_pred cCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCccceeccCCcc---chhhccccccceeeeeeeccCc
Confidence 9999999999999999999999999999999999999999999999999999766 5666688889999999988776
Q ss_pred CEEEEEEcCCeEEEEECCCCcEEEE---------cccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 002519 857 PSLLVIGCYQSLELWNMSENKTMTL---------TAHEGLIAALAVSTETGYVASASHDKFVKLWK 913 (913)
Q Consensus 857 ~~l~s~s~dg~I~iwd~~~~~~~~~---------~~h~~~V~~l~~spdg~~Lasgs~DG~I~IWd 913 (913)
++++|+..|.|.+||.+++..... ...+..|.+.+|...|..|++|..|++|++|+
T Consensus 373 -v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~k 437 (460)
T KOG0285|consen 373 -VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYK 437 (460)
T ss_pred -eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEe
Confidence 688899999999999999875521 12456799999999999999999999999996
No 10
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=7.3e-34 Score=328.30 Aligned_cols=286 Identities=29% Similarity=0.535 Sum_probs=255.2
Q ss_pred eeeeEeecC-CCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCc--eeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEE
Q 002519 624 KEANSVRAS-TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK--SKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVR 700 (913)
Q Consensus 624 ~~~~~l~~H-~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~--~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~ 700 (913)
..+..+..| ...|.|+.|+++|++|++++.|+.|++|+..+.+ ....+.+|...|.+++|+|++++|++++.|++|+
T Consensus 149 ~~~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tir 228 (456)
T KOG0266|consen 149 SLEQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLR 228 (456)
T ss_pred eeeeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEE
Confidence 335555554 8999999999999999999999999999998777 7788899999999999999999999999999999
Q ss_pred EEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeCC---ceEEEEecCCCEEEEEE
Q 002519 701 VWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG---TAQMRFQPHLGRYLAAA 777 (913)
Q Consensus 701 Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~---~~~v~~s~~~~~ll~~~ 777 (913)
|||+...+..++++++|...|++++|+|++ .++++|+.|++|+|||++++++++.+.++ +..++|.+++..+++++
T Consensus 229 iwd~~~~~~~~~~l~gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s 307 (456)
T KOG0266|consen 229 IWDLKDDGRNLKTLKGHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSAS 307 (456)
T ss_pred EeeccCCCeEEEEecCCCCceEEEEecCCC-CEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcC
Confidence 999966678999999999999999999999 78889999999999999999999998764 56788999999999999
Q ss_pred cCCeEEEEECCCCe--EEEEecCCCCC--eEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEeecCCCc---eEE
Q 002519 778 AENVVSILDAETQA--CRLSLQGHTKP--IDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNK---FHS 849 (913)
Q Consensus 778 ~dg~I~i~D~~t~~--~~~~l~~h~~~--V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~---i~~ 849 (913)
.|+.|+|||+.++. ++..+.++... +++++|+|++++|++++.| .+++||++.+ .++..+..|... +.+
T Consensus 308 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~---~~~~~~~~~~~~~~~~~~ 384 (456)
T KOG0266|consen 308 YDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSG---KSVGTYTGHSNLVRCIFS 384 (456)
T ss_pred CCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCC---cceeeecccCCcceeEec
Confidence 99999999999998 66777776665 9999999999999999999 9999999877 556666666553 344
Q ss_pred EEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEccc-CCCeEEEEEeCCCCEEEEEe--CCCcEEEeC
Q 002519 850 CVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAH-EGLIAALAVSTETGYVASAS--HDKFVKLWK 913 (913)
Q Consensus 850 l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~-~~~~h-~~~V~~l~~spdg~~Lasgs--~DG~I~IWd 913 (913)
..+++.+.++++++.|+.|++||+.++..+ .+.+| ...|..+.|++...++++++ .|+.|++|+
T Consensus 385 ~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~ 452 (456)
T KOG0266|consen 385 PTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWK 452 (456)
T ss_pred ccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEec
Confidence 456789999999999999999999987766 78889 89999999999999999998 799999996
No 11
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.6e-35 Score=303.32 Aligned_cols=288 Identities=26% Similarity=0.502 Sum_probs=268.9
Q ss_pred cceeeeEeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEE
Q 002519 622 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRV 701 (913)
Q Consensus 622 ~~~~~~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~I 701 (913)
.+.+...+.+|...|+.+-|.|+-.++++++.|++|++||..+++.+..+++|.+.|.+|+|+..|++||+++.|-.+.+
T Consensus 97 Rp~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~L 176 (406)
T KOG0295|consen 97 RPNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKL 176 (406)
T ss_pred CCCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhh
Confidence 55677888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeCCc---eEEEEecCCCEEEEEEc
Q 002519 702 WDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGT---AQMRFQPHLGRYLAAAA 778 (913)
Q Consensus 702 wdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~---~~v~~s~~~~~ll~~~~ 778 (913)
||..+-..+++...+|...|.+++|-|.|+++ ++|+.|.+|+.|++.++-|+++|.++. ..++..-+|..+++++.
T Consensus 177 Wd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~i-lS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~ 255 (406)
T KOG0295|consen 177 WDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHI-LSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSN 255 (406)
T ss_pred eeHHHHHHHHHHhcCcccceeeEEEEecCCee-eecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCC
Confidence 99987667888999999999999999998755 499999999999999999999998875 45667788888888888
Q ss_pred CCeEEEEECCCCeEEEEecCCCCCeEEEEEcCC---------------CCEEEEEeCC-eEEEEECCCCCCCceEEEeec
Q 002519 779 ENVVSILDAETQACRLSLQGHTKPIDSVCWDPS---------------GELLASVSED-SVRVWTVGSGSEGECVHELSC 842 (913)
Q Consensus 779 dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spd---------------g~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~ 842 (913)
|.+|++|-+.++.+...+++|+.+|.+++|.|. +.++++++.| +|++||+.++ .|+.++.+
T Consensus 256 dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg---~cL~tL~g 332 (406)
T KOG0295|consen 256 DQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTG---MCLFTLVG 332 (406)
T ss_pred CceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCC---eEEEEEec
Confidence 999999999999999999999999999999873 2489999999 9999999888 99999999
Q ss_pred CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 002519 843 NGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 913 (913)
Q Consensus 843 ~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~Lasgs~DG~I~IWd 913 (913)
|.+.|..++|+|.|+||+++..|++|++||+..+.++ .+..|+..|++++|+.+..+++||+-|-.+++|.
T Consensus 333 hdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 333 HDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred ccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeee
Confidence 9999999999999999999999999999999999988 7789999999999999999999999999999995
No 12
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=4.4e-34 Score=280.48 Aligned_cols=266 Identities=22% Similarity=0.440 Sum_probs=238.7
Q ss_pred CEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCc-eeEEeccCCCCeEEE
Q 002519 646 KLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGY-SLRTFMGHSASVMSL 724 (913)
Q Consensus 646 ~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~-~~~~~~~h~~~V~sl 724 (913)
-+||++++|.+||+|...+|.+.+++....+.|..+.+.||++.||+++. -.||+||+++... ++.+|.+|...|+++
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaV 89 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAV 89 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEE
Confidence 48999999999999999999999999999999999999999999999985 4599999998554 799999999999999
Q ss_pred EEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEee--CCceEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEec-CCCC
Q 002519 725 DFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK--GGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQ-GHTK 801 (913)
Q Consensus 725 ~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~--~~~~~v~~s~~~~~ll~~~~dg~I~i~D~~t~~~~~~l~-~h~~ 801 (913)
.|..+|+. +++|++||+++|||++...+.+.|. ..++++..+|+-..|+++..+|.|++||+.+..+...+. ....
T Consensus 90 gF~~dgrW-MyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~ 168 (311)
T KOG0315|consen 90 GFQCDGRW-MYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDT 168 (311)
T ss_pred EEeecCeE-EEecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCc
Confidence 99999775 5599999999999999987776654 578899999999999999999999999999987666554 3456
Q ss_pred CeEEEEEcCCCCEEEEEeCC-eEEEEECCCC---CCCceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCC-
Q 002519 802 PIDSVCWDPSGELLASVSED-SVRVWTVGSG---SEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSEN- 876 (913)
Q Consensus 802 ~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~---~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~- 876 (913)
.|.++...|||.+++.+... ..++|++-.. .....+..+..|...+..|.++|++++|++++.|.+++||+.++.
T Consensus 169 ~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~ 248 (311)
T KOG0315|consen 169 SIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFF 248 (311)
T ss_pred ceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCce
Confidence 79999999999999988877 9999999664 345677888999999999999999999999999999999999987
Q ss_pred cE-EEEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 002519 877 KT-MTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 913 (913)
Q Consensus 877 ~~-~~~~~h~~~V~~l~~spdg~~Lasgs~DG~I~IWd 913 (913)
+. +.+.+|..+|++++||.||.||++|+.|+.+++|+
T Consensus 249 kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~ 286 (311)
T KOG0315|consen 249 KLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWD 286 (311)
T ss_pred eeEEEeecCCceEEeeeeccCccEEEecCCCCceeecc
Confidence 22 27789999999999999999999999999999997
No 13
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=6.7e-36 Score=311.32 Aligned_cols=275 Identities=22% Similarity=0.444 Sum_probs=247.0
Q ss_pred CCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCceeE
Q 002519 633 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLR 712 (913)
Q Consensus 633 ~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~ 712 (913)
.-.|..|.|.|+|+.|++|+..|.+.||+..+......+..|...|+++.|++++.++++|+.+|.|++|+..- ..++
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnm--nnVk 173 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNM--NNVK 173 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccch--hhhH
Confidence 34799999999999999999999999999988888888889999999999999999999999999999999874 3345
Q ss_pred EeccC-CCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeCC---ceEEEEecCCCEEEEEEcCCeEEEEECC
Q 002519 713 TFMGH-SASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG---TAQMRFQPHLGRYLAAAAENVVSILDAE 788 (913)
Q Consensus 713 ~~~~h-~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~---~~~v~~s~~~~~ll~~~~dg~I~i~D~~ 788 (913)
.+..| ...|++++|+|++. .|++|++||+|+|||....+..+.+.++ +.++.|+|..+.+++++.|+.|++||.+
T Consensus 174 ~~~ahh~eaIRdlafSpnDs-kF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDpr 252 (464)
T KOG0284|consen 174 IIQAHHAEAIRDLAFSPNDS-KFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPR 252 (464)
T ss_pred HhhHhhhhhhheeccCCCCc-eeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCC
Confidence 55554 49999999999655 5669999999999999998887777764 6789999999999999999999999999
Q ss_pred CCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCC-CEEEEEEcCC
Q 002519 789 TQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTY-PSLLVIGCYQ 866 (913)
Q Consensus 789 t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g-~~l~s~s~dg 866 (913)
++.|+.++.+|...|..+.|.+++++|++++.| .+++||+++. +.+..+.+|...++++.|+|-. ..|.+|+.||
T Consensus 253 Sg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~m---kEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dg 329 (464)
T KOG0284|consen 253 SGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTM---KELFTYRGHKKDVTSLTWHPLNESLFTSGGSDG 329 (464)
T ss_pred CcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHh---HHHHHhhcchhhheeeccccccccceeeccCCC
Confidence 999999999999999999999999999999999 9999999855 6677888899999999999955 5677888999
Q ss_pred eEEEEECCCCcEE--EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 002519 867 SLELWNMSENKTM--TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 913 (913)
Q Consensus 867 ~I~iwd~~~~~~~--~~~~h~~~V~~l~~spdg~~Lasgs~DG~I~IWd 913 (913)
.|..|.+...+.+ .-.+|+..|++++|+|-|.+|++|+.|.++++|.
T Consensus 330 svvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~ 378 (464)
T KOG0284|consen 330 SVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWT 378 (464)
T ss_pred ceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeec
Confidence 9999999855555 4568999999999999999999999999999993
No 14
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=1.3e-32 Score=294.83 Aligned_cols=282 Identities=30% Similarity=0.566 Sum_probs=251.2
Q ss_pred eEeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCC
Q 002519 627 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN 706 (913)
Q Consensus 627 ~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~ 706 (913)
..+++|.+.|++++|++++++|++++.||.|++|++.+++....+..|...|.++.|++++++|++++.||.|++||+.+
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~ 82 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLET 82 (289)
T ss_pred hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCc
Confidence 45778999999999999999999999999999999999888889999999999999999999999999999999999987
Q ss_pred CCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeC---CceEEEEecCCCEEEEEEcCCeEE
Q 002519 707 PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAAENVVS 783 (913)
Q Consensus 707 ~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~s~~~~~ll~~~~dg~I~ 783 (913)
...+..+..|...|.++.|++++ .++++++.|+.|++||+++++....+.. .+..+.|++++..+++++.++.|+
T Consensus 83 -~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~ 160 (289)
T cd00200 83 -GECVRTLTGHTSYVSSVAFSPDG-RILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIK 160 (289)
T ss_pred -ccceEEEeccCCcEEEEEEcCCC-CEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEE
Confidence 56677788899999999999984 4676777799999999998887777653 467889999977666666699999
Q ss_pred EEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEEE
Q 002519 784 ILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVI 862 (913)
Q Consensus 784 i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~ 862 (913)
+||+++++.+..+..|...|.+++|+++++.|++++.+ .|++||++.+ ..+..+..+...+.++.|++++.+++++
T Consensus 161 i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 237 (289)
T cd00200 161 LWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTG---KCLGTLRGHENGVNSVAFSPDGYLLASG 237 (289)
T ss_pred EEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCC---ceecchhhcCCceEEEEEcCCCcEEEEE
Confidence 99999999898999999999999999999888888877 9999999865 5566666777899999999998888887
Q ss_pred EcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 002519 863 GCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 913 (913)
Q Consensus 863 s~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~Lasgs~DG~I~IWd 913 (913)
+.++.|++||+.+++.. .+..|...|.+++|++++++|++++.||.|+|||
T Consensus 238 ~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 238 SEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred cCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 77999999999987766 6678999999999999999999999999999997
No 15
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.8e-33 Score=298.00 Aligned_cols=281 Identities=24% Similarity=0.472 Sum_probs=245.3
Q ss_pred eeeEeecCCCCEEEEEEecCCC-EEEEEeCCCcEEEEECCC--Cc--eeeEec------c----CCCCeEEEEECCCCCE
Q 002519 625 EANSVRASTSKVICCHFSSDGK-LLATGGHDKKAVLWHTDT--LK--SKTNLE------E----HSSLITDVRFSPSMPR 689 (913)
Q Consensus 625 ~~~~l~~H~~~V~~l~fspdg~-~Lasgs~Dg~V~vwd~~~--~~--~~~~l~------~----h~~~V~~l~fspdg~~ 689 (913)
.++.++ |+..|.+++|+|-.. +|++|+.|-+.++|++.. .. ....|+ + ....|++|+|+.+|..
T Consensus 171 ~~kvl~-~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~ 249 (524)
T KOG0273|consen 171 KAKVLR-HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTL 249 (524)
T ss_pred ceeecc-CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCe
Confidence 334455 999999999999665 999999999999999874 11 111111 1 2467999999999999
Q ss_pred EEEEeCCCeEEEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeCCc---eEEEE
Q 002519 690 LATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGT---AQMRF 766 (913)
Q Consensus 690 Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~---~~v~~ 766 (913)
||+|+.||.+|||+.. +..+.++..|+++|.+|.|+.+|.+++ +++.|+++.+||..++.....|..+. ..+.|
T Consensus 250 LatG~~~G~~riw~~~--G~l~~tl~~HkgPI~slKWnk~G~yil-S~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW 326 (524)
T KOG0273|consen 250 LATGSEDGEARIWNKD--GNLISTLGQHKGPIFSLKWNKKGTYIL-SGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDW 326 (524)
T ss_pred EEEeecCcEEEEEecC--chhhhhhhccCCceEEEEEcCCCCEEE-eccCCccEEEEeccCceEEEeeeeccCCccceEE
Confidence 9999999999999997 577889999999999999999988665 99999999999999998877765433 34667
Q ss_pred ecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEeecCCC
Q 002519 767 QPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGN 845 (913)
Q Consensus 767 s~~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~ 845 (913)
..+ ..|++++.|+.|+||.+....++.++.+|.+.|.++.|+|.|.+|+++++| +++||.+... .+++.+..|..
T Consensus 327 ~~~-~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~---~~~~~l~~Hsk 402 (524)
T KOG0273|consen 327 QSN-DEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQS---NSVHDLQAHSK 402 (524)
T ss_pred ecC-ceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCC---cchhhhhhhcc
Confidence 654 678888999999999999999999999999999999999999999999999 9999998655 78888888999
Q ss_pred ceEEEEEeCCC---------CEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 002519 846 KFHSCVFHPTY---------PSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 913 (913)
Q Consensus 846 ~i~~l~~sp~g---------~~l~s~s~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~Lasgs~DG~I~IWd 913 (913)
.|..+.|+|.| ..+++++.|++|++||+..+.++ .+..|..+|++++|+|+|++||+|+.||.|+||+
T Consensus 403 ei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws 480 (524)
T KOG0273|consen 403 EIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWS 480 (524)
T ss_pred ceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEecc
Confidence 99999999965 46999999999999999999988 7789999999999999999999999999999995
No 16
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=6.7e-33 Score=272.15 Aligned_cols=267 Identities=22% Similarity=0.338 Sum_probs=235.0
Q ss_pred cceeeeEeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCc--eeeEeccCCCCeEEEEECCCCCEEEEEeCCCeE
Q 002519 622 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK--SKTNLEEHSSLITDVRFSPSMPRLATSSFDKTV 699 (913)
Q Consensus 622 ~~~~~~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~--~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V 699 (913)
+-++.+++....+.|..+.+.||+++||+++. -.||+||+.+++ .+.+|++|...|++|.|..+|+.+++|++||+|
T Consensus 29 tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~ 107 (311)
T KOG0315|consen 29 TGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTV 107 (311)
T ss_pred cCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceE
Confidence 44788889888899999999999999999985 579999999654 689999999999999999999999999999999
Q ss_pred EEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEee----CCceEEEEecCCCEEEE
Q 002519 700 RVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK----GGTAQMRFQPHLGRYLA 775 (913)
Q Consensus 700 ~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~----~~~~~v~~s~~~~~ll~ 775 (913)
+|||++. -.+-+.| .|..+|++|..+|+-..|| +|..+|.|++||+.+..+...+- ..+.++.+.+++..+++
T Consensus 108 kIWdlR~-~~~qR~~-~~~spVn~vvlhpnQteLi-s~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a 184 (311)
T KOG0315|consen 108 KIWDLRS-LSCQRNY-QHNSPVNTVVLHPNQTELI-SGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAA 184 (311)
T ss_pred EEEeccC-cccchhc-cCCCCcceEEecCCcceEE-eecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEE
Confidence 9999997 4444444 4789999999999988777 99999999999999887665542 35677889999999999
Q ss_pred EEcCCeEEEEECCCC------eEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEeecCCCceE
Q 002519 776 AAAENVVSILDAETQ------ACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFH 848 (913)
Q Consensus 776 ~~~dg~I~i~D~~t~------~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~ 848 (913)
+...|..++|++-+. +++..+..|...+..+.++||+++|++++.| +++||+.... .+....+.+|...+.
T Consensus 185 ~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~--~kle~~l~gh~rWvW 262 (311)
T KOG0315|consen 185 ANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF--FKLELVLTGHQRWVW 262 (311)
T ss_pred ecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCc--eeeEEEeecCCceEE
Confidence 999999999998653 5677888999999999999999999999999 9999999765 566677888999999
Q ss_pred EEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEe
Q 002519 849 SCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVS 894 (913)
Q Consensus 849 ~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~s 894 (913)
.|+|+.|+.||++++.|+.+++||+..++.+ ...+|.....|++..
T Consensus 263 dc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 263 DCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred eeeeccCccEEEecCCCCceeecccccCceeeecCCcccccEEEEee
Confidence 9999999999999999999999999999877 677888877777653
No 17
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=1.1e-34 Score=308.61 Aligned_cols=290 Identities=18% Similarity=0.353 Sum_probs=254.2
Q ss_pred cceeeeEeecCCCCEEEEEEec-CCCEEEEEeCCCcEEEEECCC-CceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeE
Q 002519 622 SFKEANSVRASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTDT-LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTV 699 (913)
Q Consensus 622 ~~~~~~~l~~H~~~V~~l~fsp-dg~~Lasgs~Dg~V~vwd~~~-~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V 699 (913)
.-+.+..+.+|+..|+++.|.| .+.+|++++.|+.|+||++.. +++++++.+|..+|.+++|+.+|..|++++.|+.|
T Consensus 203 Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~l 282 (503)
T KOG0282|consen 203 PKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFL 282 (503)
T ss_pred cHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceee
Confidence 4567888999999999999999 899999999999999999985 89999999999999999999999999999999999
Q ss_pred EEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeC---CceEEEEecCCCEEEEE
Q 002519 700 RVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAA 776 (913)
Q Consensus 700 ~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~s~~~~~ll~~ 776 (913)
++||+++ +.++..+. ....++|+.|+|++.++|++|+.|+.|+.||+++++.+..+.. .+..+.|.+++.+++++
T Consensus 283 KlwDtET-G~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFiss 360 (503)
T KOG0282|consen 283 KLWDTET-GQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISS 360 (503)
T ss_pred eeecccc-ceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeee
Confidence 9999999 66776665 4567899999999988888999999999999999998877654 56778999999999999
Q ss_pred EcCCeEEEEECCCCeEEEEecC-CCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEeecCC--CceEEEEE
Q 002519 777 AAENVVSILDAETQACRLSLQG-HTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNG--NKFHSCVF 852 (913)
Q Consensus 777 ~~dg~I~i~D~~t~~~~~~l~~-h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~--~~i~~l~~ 852 (913)
+.|+.|+||+.+....+..+.. +.....+|..+|+++++++-+.| .|.+|.+...-.....+.+++|. +.-..|.|
T Consensus 361 SDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~f 440 (503)
T KOG0282|consen 361 SDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDF 440 (503)
T ss_pred ccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEE
Confidence 9999999999998866554432 33456788999999999999999 99999986554444445555553 44567889
Q ss_pred eCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCC-CEEEEEeCCCcEEEeC
Q 002519 853 HPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTET-GYVASASHDKFVKLWK 913 (913)
Q Consensus 853 sp~g~~l~s~s~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg-~~Lasgs~DG~I~IWd 913 (913)
||||++|++|..||.+.+||.++.+++ .+.+|+..+..+.|+|.. ..||+|+.||.|+|||
T Consensus 441 SpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 441 SPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred cCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 999999999999999999999999888 888999999999999954 4799999999999997
No 18
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.5e-34 Score=296.79 Aligned_cols=286 Identities=19% Similarity=0.319 Sum_probs=241.3
Q ss_pred ccceeeeEeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCC---CceeeEeccCCCCeEEEEECCCCCEEEEEeCCC
Q 002519 621 FSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT---LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDK 697 (913)
Q Consensus 621 ~~~~~~~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~---~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg 697 (913)
++.++...+..|++.|+-+.||++|++||+++.|.+..||++.. .+.++++.+|..+|..|.|+||.++|++|+.|.
T Consensus 212 ip~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e 291 (519)
T KOG0293|consen 212 IPSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDE 291 (519)
T ss_pred CCchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchH
Confidence 46778888999999999999999999999999999999998864 455888999999999999999999999999999
Q ss_pred eEEEEEcCCCCceeEEe-ccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEee----CCceEEEEecCCCE
Q 002519 698 TVRVWDADNPGYSLRTF-MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK----GGTAQMRFQPHLGR 772 (913)
Q Consensus 698 ~V~Iwdl~~~~~~~~~~-~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~----~~~~~v~~s~~~~~ 772 (913)
.+++||+.+ +.....+ .++...+.+++|.||+.+++ +|+.|+.|..||+.... ....+ ..+.+++..++|.+
T Consensus 292 ~~~lwDv~t-gd~~~~y~~~~~~S~~sc~W~pDg~~~V-~Gs~dr~i~~wdlDgn~-~~~W~gvr~~~v~dlait~Dgk~ 368 (519)
T KOG0293|consen 292 VLSLWDVDT-GDLRHLYPSGLGFSVSSCAWCPDGFRFV-TGSPDRTIIMWDLDGNI-LGNWEGVRDPKVHDLAITYDGKY 368 (519)
T ss_pred heeeccCCc-chhhhhcccCcCCCcceeEEccCCceeE-ecCCCCcEEEecCCcch-hhcccccccceeEEEEEcCCCcE
Confidence 999999998 4444444 34578899999999998765 99999999999998543 33322 24678899999999
Q ss_pred EEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEeecCCCc--eEE
Q 002519 773 YLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNK--FHS 849 (913)
Q Consensus 773 ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~--i~~ 849 (913)
+++.+.|..|++|+.++...+..+. ...+|++++++.+++++++.-.+ .|.+||+... ..+..+.+|... +..
T Consensus 369 vl~v~~d~~i~l~~~e~~~dr~lis-e~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~---~lv~kY~Ghkq~~fiIr 444 (519)
T KOG0293|consen 369 VLLVTVDKKIRLYNREARVDRGLIS-EEQPITSFSISKDGKLALVNLQDQEIHLWDLEEN---KLVRKYFGHKQGHFIIR 444 (519)
T ss_pred EEEEecccceeeechhhhhhhcccc-ccCceeEEEEcCCCcEEEEEcccCeeEEeecchh---hHHHHhhcccccceEEE
Confidence 9999999999999998876665443 45789999999999999988888 9999999743 556666665433 333
Q ss_pred EEEe-CCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCC-CEEEEEeCCCcEEEeC
Q 002519 850 CVFH-PTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTET-GYVASASHDKFVKLWK 913 (913)
Q Consensus 850 l~~s-p~g~~l~s~s~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg-~~Lasgs~DG~I~IWd 913 (913)
-||- .+..++++|+.|+.|+||+..+++++ .+.+|...|+|++|+|.. .++|+||+||+||||.
T Consensus 445 SCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg 511 (519)
T KOG0293|consen 445 SCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWG 511 (519)
T ss_pred eccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEec
Confidence 3443 35589999999999999999999988 899999999999999955 5799999999999994
No 19
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=4.1e-32 Score=270.05 Aligned_cols=281 Identities=22% Similarity=0.424 Sum_probs=239.2
Q ss_pred ceeeeEeecCCCCEEEEEEecC-CCEEEEEeCCCcEEEEECCC---CceeeEe-ccCCCCeEEEEECCCCCEEEEEeCCC
Q 002519 623 FKEANSVRASTSKVICCHFSSD-GKLLATGGHDKKAVLWHTDT---LKSKTNL-EEHSSLITDVRFSPSMPRLATSSFDK 697 (913)
Q Consensus 623 ~~~~~~l~~H~~~V~~l~fspd-g~~Lasgs~Dg~V~vwd~~~---~~~~~~l-~~h~~~V~~l~fspdg~~Lasgs~Dg 697 (913)
+.++..+.+|+++|..++|+|- |..||+|+.|+.|+||+... ..++..+ .+|+..|++|+|+|.|++|+++|+|.
T Consensus 4 l~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~ 83 (312)
T KOG0645|consen 4 LILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDA 83 (312)
T ss_pred ceeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccc
Confidence 4577889999999999999998 89999999999999999984 4455444 36999999999999999999999999
Q ss_pred eEEEEEcCCC-CceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCC---eeeEEeeCC---ceEEEEecCC
Q 002519 698 TVRVWDADNP-GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG---SCTRVFKGG---TAQMRFQPHL 770 (913)
Q Consensus 698 ~V~Iwdl~~~-~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~---~~~~~~~~~---~~~v~~s~~~ 770 (913)
++.||.-..+ -+++.++.||...|.|++|+++|. +|++|+.|..|-||.+..+ .|...+..+ +..+.|+|..
T Consensus 84 t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~-~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~ 162 (312)
T KOG0645|consen 84 TVVIWKKEDGEFECVATLEGHENEVKCVAWSASGN-YLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTE 162 (312)
T ss_pred eEEEeecCCCceeEEeeeeccccceeEEEEcCCCC-EEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCc
Confidence 9999987642 367889999999999999999976 6779999999999999854 466666665 4668899999
Q ss_pred CEEEEEEcCCeEEEEECC---CCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEeecCCCc
Q 002519 771 GRYLAAAAENVVSILDAE---TQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNK 846 (913)
Q Consensus 771 ~~ll~~~~dg~I~i~D~~---t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~ 846 (913)
..|++++.|++|++|+.. ...++.++.+|...|.+++|++.|..|+++++| +|+||...+. .-..|...
T Consensus 163 dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~-------~~~~~sr~ 235 (312)
T KOG0645|consen 163 DLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD-------LSGMHSRA 235 (312)
T ss_pred ceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccC-------cchhcccc
Confidence 999999999999999766 347899999999999999999999999999999 9999986532 11234677
Q ss_pred eEEEEEeCCCCEEEEEEcCCeEEEEECCCCc---E---E--EEcccCCCeEEEEEeCC-CCEEEEEeCCCcEEEeC
Q 002519 847 FHSCVFHPTYPSLLVIGCYQSLELWNMSENK---T---M--TLTAHEGLIAALAVSTE-TGYVASASHDKFVKLWK 913 (913)
Q Consensus 847 i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~---~---~--~~~~h~~~V~~l~~spd-g~~Lasgs~DG~I~IWd 913 (913)
++.+.|. ...|++++.|+.|+||...... . + ....|+..|+++.|.|. .++|++|++||.|++|.
T Consensus 236 ~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~ 309 (312)
T KOG0645|consen 236 LYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWE 309 (312)
T ss_pred eEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEE
Confidence 8889998 4579999999999999776431 1 1 34579999999999994 67999999999999995
No 20
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=2.1e-32 Score=289.99 Aligned_cols=274 Identities=23% Similarity=0.379 Sum_probs=251.2
Q ss_pred CCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCceeE
Q 002519 633 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLR 712 (913)
Q Consensus 633 ~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~ 712 (913)
+..|++++|+.+|.+||+|+.||.++||+. ++..+.+|..|+++|.+|+|+.+|.+|++++.|+++.|||..+ +....
T Consensus 235 nkdVT~L~Wn~~G~~LatG~~~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~-g~~~q 312 (524)
T KOG0273|consen 235 NKDVTSLDWNNDGTLLATGSEDGEARIWNK-DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHT-GTVKQ 312 (524)
T ss_pred cCCcceEEecCCCCeEEEeecCcEEEEEec-CchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccC-ceEEE
Confidence 467999999999999999999999999996 5678999999999999999999999999999999999999987 66777
Q ss_pred EeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeC---CceEEEEecCCCEEEEEEcCCeEEEEECCC
Q 002519 713 TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAAENVVSILDAET 789 (913)
Q Consensus 713 ~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~s~~~~~ll~~~~dg~I~i~D~~t 789 (913)
.|.-|..+-.+|.|-.+. -|++++.|+.|+++.+.....+.++.+ .+..+.|.|.+..|++++.|++++||....
T Consensus 313 ~f~~~s~~~lDVdW~~~~--~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~ 390 (524)
T KOG0273|consen 313 QFEFHSAPALDVDWQSND--EFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQ 390 (524)
T ss_pred eeeeccCCccceEEecCc--eEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCC
Confidence 777788887889998654 466999999999999999888888766 467789999999999999999999999999
Q ss_pred CeEEEEecCCCCCeEEEEEcCCC---------CEEEEEeCC-eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEE
Q 002519 790 QACRLSLQGHTKPIDSVCWDPSG---------ELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSL 859 (913)
Q Consensus 790 ~~~~~~l~~h~~~V~sl~~spdg---------~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l 859 (913)
..+...+.+|...|..+.|+|+| ..+++++.| +|++||+..+ .+++.+..|..+|++++|+|+|+++
T Consensus 391 ~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~g---v~i~~f~kH~~pVysvafS~~g~yl 467 (524)
T KOG0273|consen 391 SNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESG---VPIHTLMKHQEPVYSVAFSPNGRYL 467 (524)
T ss_pred CcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCC---ceeEeeccCCCceEEEEecCCCcEE
Confidence 99999999999999999999964 468888888 9999999877 8999999999999999999999999
Q ss_pred EEEEcCCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 002519 860 LVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 913 (913)
Q Consensus 860 ~s~s~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~DG~I~IWd 913 (913)
++|+.||.|.+|++.+++++......+.|..++|+.+|.+|+.+-.||.|++-|
T Consensus 468 AsGs~dg~V~iws~~~~~l~~s~~~~~~Ifel~Wn~~G~kl~~~~sd~~vcvld 521 (524)
T KOG0273|consen 468 ASGSLDGCVHIWSTKTGKLVKSYQGTGGIFELCWNAAGDKLGACASDGSVCVLD 521 (524)
T ss_pred EecCCCCeeEeccccchheeEeecCCCeEEEEEEcCCCCEEEEEecCCCceEEE
Confidence 999999999999999999998888888899999999999999999999998754
No 21
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=5.8e-32 Score=300.02 Aligned_cols=292 Identities=23% Similarity=0.380 Sum_probs=255.3
Q ss_pred cccCccceeeeEeecCCCCEEEEEEecCCCEEEEEeCC-CcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeC
Q 002519 617 VSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHD-KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF 695 (913)
Q Consensus 617 ~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~Lasgs~D-g~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~ 695 (913)
+..-..|..++.+.-...+|..++|+..|.+||.|+.. |.+-||++.+...+....+|...|+|++++|||.+||||++
T Consensus 291 LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~e 370 (893)
T KOG0291|consen 291 LYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAE 370 (893)
T ss_pred EEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccC
Confidence 33445678888888888999999999999999998865 89999999998889999999999999999999999999999
Q ss_pred CCeEEEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeCC----ceEEEEecCCC
Q 002519 696 DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG----TAQMRFQPHLG 771 (913)
Q Consensus 696 Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~----~~~v~~s~~~~ 771 (913)
||+|+|||..+ +.|+.+|..|+..|+.+.|+..+..++ +.+-||+|+.||+...++.++|..+ ..+++..|.|.
T Consensus 371 DgKVKvWn~~S-gfC~vTFteHts~Vt~v~f~~~g~~ll-ssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGe 448 (893)
T KOG0291|consen 371 DGKVKVWNTQS-GFCFVTFTEHTSGVTAVQFTARGNVLL-SSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGE 448 (893)
T ss_pred CCcEEEEeccC-ceEEEEeccCCCceEEEEEEecCCEEE-EeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCC
Confidence 99999999998 899999999999999999999977554 9999999999999999999998764 35678888888
Q ss_pred EEEEEEcCC-eEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEeecCCCceEE
Q 002519 772 RYLAAAAEN-VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHS 849 (913)
Q Consensus 772 ~ll~~~~dg-~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~ 849 (913)
.+++|+.|. .|.+|++.+|+.+-.+.+|+++|.+++|+|++..|++++.| +|++||+-... ..+.++. ....+..
T Consensus 449 lV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~--~~vEtl~-i~sdvl~ 525 (893)
T KOG0291|consen 449 LVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSS--GTVETLE-IRSDVLA 525 (893)
T ss_pred EEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccC--ceeeeEe-eccceeE
Confidence 888888876 79999999999999999999999999999999999999999 99999995431 2233332 3667899
Q ss_pred EEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEc--------------------ccCCCeEEEEEeCCCCEEEEEeCCCc
Q 002519 850 CVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLT--------------------AHEGLIAALAVSTETGYVASASHDKF 908 (913)
Q Consensus 850 l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~-~~~--------------------~h~~~V~~l~~spdg~~Lasgs~DG~ 908 (913)
++|+|+|+.|++++-||.|.+||+..+..+ .+. .....++.+++++||++|++||....
T Consensus 526 vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~ 605 (893)
T KOG0291|consen 526 VSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNS 605 (893)
T ss_pred EEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCccc
Confidence 999999999999999999999999876543 111 12357899999999999999999999
Q ss_pred EEEeC
Q 002519 909 VKLWK 913 (913)
Q Consensus 909 I~IWd 913 (913)
|+||+
T Consensus 606 iCiY~ 610 (893)
T KOG0291|consen 606 ICIYD 610 (893)
T ss_pred EEEEE
Confidence 99985
No 22
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.5e-32 Score=274.27 Aligned_cols=245 Identities=20% Similarity=0.335 Sum_probs=214.9
Q ss_pred eeeeEeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEE
Q 002519 624 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 703 (913)
Q Consensus 624 ~~~~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwd 703 (913)
..++.++||...|..+..++||.+.++++.|+++++||+.+++....|.+|...|.+++|++|.+.|++|+.|++|++|+
T Consensus 54 ~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwn 133 (315)
T KOG0279|consen 54 VPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWN 133 (315)
T ss_pred ceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeee
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCceeEEecc--CCCCeEEEEEcCCC-CeEEEEEeCCCcEEEEEcCCCeeeEEeeCC---ceEEEEecCCCEEEEEE
Q 002519 704 ADNPGYSLRTFMG--HSASVMSLDFHPNK-DDLICSCDGDGEIRYWSINNGSCTRVFKGG---TAQMRFQPHLGRYLAAA 777 (913)
Q Consensus 704 l~~~~~~~~~~~~--h~~~V~sl~fsp~~-~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~---~~~v~~s~~~~~ll~~~ 777 (913)
+.. .+..+... +.+.|.|++|+|+. +-+|++++.|++|++||+++.+....|.++ .+.+.++|||..++.|+
T Consensus 134 t~g--~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGg 211 (315)
T KOG0279|consen 134 TLG--VCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGG 211 (315)
T ss_pred ecc--cEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCC
Confidence 985 33333333 37899999999985 557789999999999999999988888765 46788999999999999
Q ss_pred cCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCCceEEEeec---------CCCceE
Q 002519 778 AENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSC---------NGNKFH 848 (913)
Q Consensus 778 ~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d~I~vwdl~~~~~~~~i~~~~~---------~~~~i~ 848 (913)
.||.+.+||++.++.++.+. |...|.+++|+|+..+|+.+....|+|||+.+.. ++.+++. ......
T Consensus 212 kdg~~~LwdL~~~k~lysl~-a~~~v~sl~fspnrywL~~at~~sIkIwdl~~~~---~v~~l~~d~~g~s~~~~~~~cl 287 (315)
T KOG0279|consen 212 KDGEAMLWDLNEGKNLYSLE-AFDIVNSLCFSPNRYWLCAATATSIKIWDLESKA---VVEELKLDGIGPSSKAGDPICL 287 (315)
T ss_pred CCceEEEEEccCCceeEecc-CCCeEeeEEecCCceeEeeccCCceEEEeccchh---hhhhccccccccccccCCcEEE
Confidence 99999999999999988776 7889999999999888887777799999998763 3333221 133467
Q ss_pred EEEEeCCCCEEEEEEcCCeEEEEECC
Q 002519 849 SCVFHPTYPSLLVIGCYQSLELWNMS 874 (913)
Q Consensus 849 ~l~~sp~g~~l~s~s~dg~I~iwd~~ 874 (913)
+++|+++|..|++|..|+.|++|.+.
T Consensus 288 slaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 288 SLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred EEEEcCCCcEEEeeecCCcEEEEEee
Confidence 78999999999999999999999874
No 23
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.4e-32 Score=302.15 Aligned_cols=289 Identities=21% Similarity=0.305 Sum_probs=261.5
Q ss_pred ccceeeeEeecCCCCEEEEEEe-cCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeE
Q 002519 621 FSFKEANSVRASTSKVICCHFS-SDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTV 699 (913)
Q Consensus 621 ~~~~~~~~l~~H~~~V~~l~fs-pdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V 699 (913)
-+++..+.+-|..+.|.+++|- |+..+||+++..+.+++|++.+..+. .+.+|+..|.++....+|-+|+||+.|++|
T Consensus 311 ~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~~~g~llat~sKD~sv 389 (775)
T KOG0319|consen 311 DELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVWSSGDLLATGSKDKSV 389 (775)
T ss_pred cccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeecccCcEEEEecCCceE
Confidence 3567778888999999999985 57789999999999999999887766 899999999999966677899999999999
Q ss_pred EEEEcCCCC---ceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeee------------EEeeCCceEE
Q 002519 700 RVWDADNPG---YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT------------RVFKGGTAQM 764 (913)
Q Consensus 700 ~Iwdl~~~~---~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~------------~~~~~~~~~v 764 (913)
++|.++++. .++....+|...|.+++++..+..+|++++.|++|++|++...+.. +.+...++++
T Consensus 390 ilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~V 469 (775)
T KOG0319|consen 390 ILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCV 469 (775)
T ss_pred EEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccce
Confidence 999985422 3455677999999999999988999999999999999999873211 1123467899
Q ss_pred EEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEeecC
Q 002519 765 RFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCN 843 (913)
Q Consensus 765 ~~s~~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~ 843 (913)
+++|++..+++++.|.+.+||+++......++.+|+..|.++.|++...++++++.| +|+||.+.+. .|+.++.+|
T Consensus 470 aia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~f---SClkT~eGH 546 (775)
T KOG0319|consen 470 AIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTF---SCLKTFEGH 546 (775)
T ss_pred EecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccc---eeeeeecCc
Confidence 999999999999999999999999999999999999999999999999999999999 9999999766 999999999
Q ss_pred CCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 002519 844 GNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 913 (913)
Q Consensus 844 ~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~Lasgs~DG~I~IWd 913 (913)
...|..+.|-.+++.|++++.||.|+||++++++++ ++..|.+.|++++.++...+++||+.||.|.+|+
T Consensus 547 ~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wk 617 (775)
T KOG0319|consen 547 TSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWK 617 (775)
T ss_pred cceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEee
Confidence 999999999999999999999999999999999998 8999999999999999999999999999999996
No 24
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=2.9e-32 Score=306.33 Aligned_cols=274 Identities=24% Similarity=0.414 Sum_probs=239.8
Q ss_pred eeeEeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCC-------------------------------ceeeEecc
Q 002519 625 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL-------------------------------KSKTNLEE 673 (913)
Q Consensus 625 ~~~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~-------------------------------~~~~~l~~ 673 (913)
+.-++..-...|+|+.|++|+++||.|..|..|++|.+... ...+++.+
T Consensus 370 c~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~G 449 (707)
T KOG0263|consen 370 CMYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYG 449 (707)
T ss_pred EEEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeec
Confidence 33445555678999999999999999999999999987631 12345779
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCee
Q 002519 674 HSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC 753 (913)
Q Consensus 674 h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~ 753 (913)
|.++|..+.|+|+.++|++||.|++||+|.+++ ..++..++||..+|+++.|+|.| ++|+|++.|++-++|.......
T Consensus 450 H~GPVyg~sFsPd~rfLlScSED~svRLWsl~t-~s~~V~y~GH~~PVwdV~F~P~G-yYFatas~D~tArLWs~d~~~P 527 (707)
T KOG0263|consen 450 HSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDT-WSCLVIYKGHLAPVWDVQFAPRG-YYFATASHDQTARLWSTDHNKP 527 (707)
T ss_pred CCCceeeeeecccccceeeccCCcceeeeeccc-ceeEEEecCCCcceeeEEecCCc-eEEEecCCCceeeeeecccCCc
Confidence 999999999999999999999999999999998 77888999999999999999985 5777999999999999999888
Q ss_pred eEEeeCC---ceEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECC
Q 002519 754 TRVFKGG---TAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVG 829 (913)
Q Consensus 754 ~~~~~~~---~~~v~~s~~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~ 829 (913)
.+.|.++ +.++.|+|+..++++|+.|.+|++||+.++..++.|.||..+|++++|+|+|++|++|++| .|+|||+.
T Consensus 528 lRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~ 607 (707)
T KOG0263|consen 528 LRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLA 607 (707)
T ss_pred hhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcC
Confidence 8888765 5678999999999999999999999999999999999999999999999999999999999 99999998
Q ss_pred CCCCCceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-------------------------EEccc
Q 002519 830 SGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-------------------------TLTAH 884 (913)
Q Consensus 830 ~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~-------------------------~~~~h 884 (913)
++ ..+..+.+|.+.|.++.|+.+|..|++++.|++|++||+..-... .+..-
T Consensus 608 ~~---~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llgs~~tK 684 (707)
T KOG0263|consen 608 NG---SLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIELLNLGHISTSNSAITQENNASSLLLGSFYTK 684 (707)
T ss_pred CC---cchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhcccccccccccccccccccCCCCcceeeeeeec
Confidence 87 677888889999999999999999999999999999998542211 33344
Q ss_pred CCCeEEEEEeCCCCEEEEE
Q 002519 885 EGLIAALAVSTETGYVASA 903 (913)
Q Consensus 885 ~~~V~~l~~spdg~~Lasg 903 (913)
..+|.++.|...+..|+.|
T Consensus 685 ~tpv~~l~FtrrNl~L~~g 703 (707)
T KOG0263|consen 685 NTPVVGLHFTRRNLLLAVG 703 (707)
T ss_pred CceEEEEEEeccceeEEec
Confidence 5578888888776555554
No 25
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=3.6e-31 Score=273.08 Aligned_cols=297 Identities=19% Similarity=0.262 Sum_probs=256.9
Q ss_pred CCCCCCcccccccCccceeeeEeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCC
Q 002519 607 PRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPS 686 (913)
Q Consensus 607 ~~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspd 686 (913)
++|....+|+...+ .....+.+|++.|+|+.||.||.+||||+.+|.|+||+..++.....+......|.-++|+|.
T Consensus 83 GgDD~AflW~~~~g---e~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~ 159 (399)
T KOG0296|consen 83 GGDDLAFLWDISTG---EFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPR 159 (399)
T ss_pred CCCceEEEEEccCC---cceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEeccc
Confidence 34444555666555 367788999999999999999999999999999999999999999998877788999999999
Q ss_pred CCEEEEEeCCCeEEEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeC----Cce
Q 002519 687 MPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG----GTA 762 (913)
Q Consensus 687 g~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~----~~~ 762 (913)
+..|+.|+.||.|.+|.+.+ +...+.+.||..++++=+|.|+|++++ ++..||+|++||+.++..+..+.. ...
T Consensus 160 a~illAG~~DGsvWmw~ip~-~~~~kv~~Gh~~~ct~G~f~pdGKr~~-tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~ 237 (399)
T KOG0296|consen 160 AHILLAGSTDGSVWMWQIPS-QALCKVMSGHNSPCTCGEFIPDGKRIL-TGYDDGTIIVWNPKTGQPLHKITQAEGLELP 237 (399)
T ss_pred ccEEEeecCCCcEEEEECCC-cceeeEecCCCCCcccccccCCCceEE-EEecCceEEEEecCCCceeEEecccccCcCC
Confidence 99999999999999999998 577889999999999999999988766 999999999999999998887762 356
Q ss_pred EEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEec--------CCCCCeEEEEEcC---CCCEEEEEeCC-eEEEEECCC
Q 002519 763 QMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQ--------GHTKPIDSVCWDP---SGELLASVSED-SVRVWTVGS 830 (913)
Q Consensus 763 ~v~~s~~~~~ll~~~~dg~I~i~D~~t~~~~~~l~--------~h~~~V~sl~~sp---dg~~l~s~s~d-~I~vwdl~~ 830 (913)
++.+...+..++.+..++.+++....+++.+.... .++..+.||.+.| .-.+.|+|+-| +|.|||+..
T Consensus 238 ~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~ 317 (399)
T KOG0296|consen 238 CISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAA 317 (399)
T ss_pred ccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEeccc
Confidence 67788888888889999999999999998888776 3445555555555 55688999999 999999976
Q ss_pred CCCCceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEeCCCcE
Q 002519 831 GSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFV 909 (913)
Q Consensus 831 ~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~Lasgs~DG~I 909 (913)
. .++..-.|...|..+.|-+ ..+|++++.+|.|++||.++|.++ .+.+|...|.+++++|+.++|+|+|.|++.
T Consensus 318 ~----~~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a 392 (399)
T KOG0296|consen 318 S----TLRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTA 392 (399)
T ss_pred c----hhheeccCCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeE
Confidence 4 2333445677899999998 789999999999999999999988 899999999999999999999999999999
Q ss_pred EEeC
Q 002519 910 KLWK 913 (913)
Q Consensus 910 ~IWd 913 (913)
+||+
T Consensus 393 ~VF~ 396 (399)
T KOG0296|consen 393 LVFE 396 (399)
T ss_pred EEEe
Confidence 9985
No 26
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=6e-32 Score=303.80 Aligned_cols=263 Identities=28% Similarity=0.468 Sum_probs=221.6
Q ss_pred ceEEEEcCCCcccc---CCCCeEEeCCCcchhhhcccccccCCccCceeeecccCCCCCCCCCCcccccccCccceeeeE
Q 002519 552 PLMMFGTDGAGTLT---SPSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANS 628 (913)
Q Consensus 552 ~~~~~s~dg~~~~~---~~~~~vWd~~~g~~~~~~~~~~~~g~~d~~v~~~~~~d~~~~~d~~~~~~~~~~~~~~~~~~~ 628 (913)
.+..|++|+..++. ++.+++|.....+++..-+ ..++..-++...|......|.... ...++
T Consensus 382 ~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~------------~~~l~~~d~~sad~~~~~~D~~~~---~~~~~ 446 (707)
T KOG0263|consen 382 TCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKD------------ASDLSNIDTESADVDVDMLDDDSS---GTSRT 446 (707)
T ss_pred eeEeecCCcchhhccccccEEEEEecchhhhccccc------------hhhhccccccccchhhhhccccCC---ceeEE
Confidence 35667778775555 5677999998654332111 012222222222222222222222 34455
Q ss_pred eecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCC
Q 002519 629 VRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG 708 (913)
Q Consensus 629 l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~ 708 (913)
+.+|.++|+.+.|+|+.++|++++.|++||+|.+.+..++..+++|..+|+++.|+|-|-|+||+|.|++.++|..+. .
T Consensus 447 L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~-~ 525 (707)
T KOG0263|consen 447 LYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDH-N 525 (707)
T ss_pred eecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeeccc-C
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999998 8
Q ss_pred ceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeCC---ceEEEEecCCCEEEEEEcCCeEEEE
Q 002519 709 YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG---TAQMRFQPHLGRYLAAAAENVVSIL 785 (913)
Q Consensus 709 ~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~---~~~v~~s~~~~~ll~~~~dg~I~i~ 785 (913)
.+++.+.+|-+.|.|+.|+|+.. ++++|+.|.+||+||+.+|..++.|.++ +.+++|+|+|.++++++.|+.|.||
T Consensus 526 ~PlRifaghlsDV~cv~FHPNs~-Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iW 604 (707)
T KOG0263|consen 526 KPLRIFAGHLSDVDCVSFHPNSN-YVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIW 604 (707)
T ss_pred CchhhhcccccccceEEECCccc-ccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEE
Confidence 89999999999999999999965 6679999999999999999999999875 5778999999999999999999999
Q ss_pred ECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCC
Q 002519 786 DAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSG 831 (913)
Q Consensus 786 D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~ 831 (913)
|+.+++.+..+.+|++.|.++.|+.+|.+||+++.| +|++||+...
T Consensus 605 Dl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 605 DLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred EcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 999999999999999999999999999999999999 9999999653
No 27
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=1.4e-30 Score=279.30 Aligned_cols=356 Identities=19% Similarity=0.336 Sum_probs=282.0
Q ss_pred cceEEEEcCCCcccc---CCCCeEEeCCCcchhhhcccc-----cccCCccCceeeecccCCCCCCCCCCcccccccCcc
Q 002519 551 KPLMMFGTDGAGTLT---SPSNQLWDDKDLELRADMDRL-----VEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFS 622 (913)
Q Consensus 551 ~~~~~~s~dg~~~~~---~~~~~vWd~~~g~~~~~~~~~-----~~~g~~d~~v~~~~~~d~~~~~d~~~~~~~~~~~~~ 622 (913)
.....|||.|-|+++ .+.++|||....+...+-+.- +.+.+++..-.....- ..+++..++.+-+..+
T Consensus 62 vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~av--GEGrerfg~~F~~DSG-- 137 (603)
T KOG0318|consen 62 VTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAV--GEGRERFGHVFLWDSG-- 137 (603)
T ss_pred eEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEE--ecCccceeEEEEecCC--
Confidence 457889999998887 567799999774332222111 1122222222222111 1122223333333333
Q ss_pred ceeeeEeecCCCCEEEEEEecCC-CEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEE
Q 002519 623 FKEANSVRASTSKVICCHFSSDG-KLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRV 701 (913)
Q Consensus 623 ~~~~~~l~~H~~~V~~l~fspdg-~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~I 701 (913)
..+..+.+|...|.+|+|-|.. -+++||+.|++|.+|+-...+...+++.|...|.|++|+|||+++++++.||+|.|
T Consensus 138 -~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~i 216 (603)
T KOG0318|consen 138 -NSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYI 216 (603)
T ss_pred -CccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEE
Confidence 4567789999999999999865 48999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCceeEEec---cCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeCCce----EEEEecCCCEEE
Q 002519 702 WDADNPGYSLRTFM---GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTA----QMRFQPHLGRYL 774 (913)
Q Consensus 702 wdl~~~~~~~~~~~---~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~----~v~~s~~~~~ll 774 (913)
||=.+ ++.+..+. +|.+.|.+|.|+||+..++ +++.|.+++|||+.+.++++++.-+.. .+-+...+..|+
T Consensus 217 yDGkt-ge~vg~l~~~~aHkGsIfalsWsPDs~~~~-T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lI 294 (603)
T KOG0318|consen 217 YDGKT-GEKVGELEDSDAHKGSIFALSWSPDSTQFL-TVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLI 294 (603)
T ss_pred EcCCC-ccEEEEecCCCCccccEEEEEECCCCceEE-EecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEE
Confidence 99998 67777777 8999999999999988766 999999999999999999998865433 222233378999
Q ss_pred EEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCce-----------------
Q 002519 775 AAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGEC----------------- 836 (913)
Q Consensus 775 ~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~----------------- 836 (913)
+.+.+|.|.+++......+..+.+|...|+++..++++++|++|+.| .|.-||+.++...+.
T Consensus 295 tVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~ 374 (603)
T KOG0318|consen 295 TVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASES 374 (603)
T ss_pred EEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCC
Confidence 99999999999999999999999999999999999999999999999 999999754310000
Q ss_pred --------------------------------------------------------------------------------
Q 002519 837 -------------------------------------------------------------------------------- 836 (913)
Q Consensus 837 -------------------------------------------------------------------------------- 836 (913)
T Consensus 375 ~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~ 454 (603)
T KOG0318|consen 375 GELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPD 454 (603)
T ss_pred CcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCC
Confidence
Q ss_pred ------------E-------------EEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE--EEcccCCCeE
Q 002519 837 ------------V-------------HELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM--TLTAHEGLIA 889 (913)
Q Consensus 837 ------------i-------------~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~--~~~~h~~~V~ 889 (913)
+ .....|..+|++++|+||+.+|+++...+.|.+||+.+.+.. .+.-|...|.
T Consensus 455 ~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~ 534 (603)
T KOG0318|consen 455 GSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKIN 534 (603)
T ss_pred CCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEE
Confidence 0 011234567888999999999999999999999999888775 5556999999
Q ss_pred EEEEeCCCCEEEEEeCCCcEEEeC
Q 002519 890 ALAVSTETGYVASASHDKFVKLWK 913 (913)
Q Consensus 890 ~l~~spdg~~Lasgs~DG~I~IWd 913 (913)
|++|+|++.+||||+-|-+|.||+
T Consensus 535 ~~aWsP~n~~vATGSlDt~Viiys 558 (603)
T KOG0318|consen 535 CVAWSPNNKLVATGSLDTNVIIYS 558 (603)
T ss_pred EEEeCCCceEEEeccccceEEEEE
Confidence 999999999999999999999995
No 28
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=8.3e-31 Score=263.11 Aligned_cols=241 Identities=24% Similarity=0.439 Sum_probs=217.3
Q ss_pred eEeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCC------ceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEE
Q 002519 627 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL------KSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVR 700 (913)
Q Consensus 627 ~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~------~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~ 700 (913)
..+.-....|..++|+|.|+++|+|+-|+...||++.+. ...+.+.+|.+.+.|+.|-+ ...|+|+|.|.++.
T Consensus 91 haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCa 169 (343)
T KOG0286|consen 91 HAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCA 169 (343)
T ss_pred eEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcC-CCceEecCCCceEE
Confidence 344455678999999999999999999999999999854 45677999999999999987 55899999999999
Q ss_pred EEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeCC---ceEEEEecCCCEEEEEE
Q 002519 701 VWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG---TAQMRFQPHLGRYLAAA 777 (913)
Q Consensus 701 Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~---~~~v~~s~~~~~ll~~~ 777 (913)
+||+++ +..+..|.+|.+.|.+|++.|...+.|++|+-|+..++||++.+.++..|.++ ++.++|.|++..|++++
T Consensus 170 lWDie~-g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGS 248 (343)
T KOG0286|consen 170 LWDIET-GQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGS 248 (343)
T ss_pred EEEccc-ceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecC
Confidence 999998 88899999999999999999955556779999999999999999999999875 67899999999999999
Q ss_pred cCCeEEEEECCCCeEEEEecC--CCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEeecCCCceEEEEEeC
Q 002519 778 AENVVSILDAETQACRLSLQG--HTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHP 854 (913)
Q Consensus 778 ~dg~I~i~D~~t~~~~~~l~~--h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp 854 (913)
.|++.++||++....+..+.. -...|++++|+..|++|++|..| ++.|||.-.+ +.+..+.+|++.|+++..+|
T Consensus 249 DD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~---e~vg~L~GHeNRvScl~~s~ 325 (343)
T KOG0286|consen 249 DDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKG---ERVGVLAGHENRVSCLGVSP 325 (343)
T ss_pred CCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeecccc---ceEEEeeccCCeeEEEEECC
Confidence 999999999999887777763 34579999999999999999999 9999999766 77888889999999999999
Q ss_pred CCCEEEEEEcCCeEEEEE
Q 002519 855 TYPSLLVIGCYQSLELWN 872 (913)
Q Consensus 855 ~g~~l~s~s~dg~I~iwd 872 (913)
||..+++|+.|..|+||.
T Consensus 326 DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 326 DGMAVATGSWDSTLRIWA 343 (343)
T ss_pred CCcEEEecchhHheeecC
Confidence 999999999999999994
No 29
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.2e-31 Score=297.73 Aligned_cols=349 Identities=21% Similarity=0.353 Sum_probs=265.2
Q ss_pred EEEEcCCCccccCC--CCeEEeCCCcchhhhcccccccCCccCceeee-cccCC----CCCCCCCCcccccccCccceee
Q 002519 554 MMFGTDGAGTLTSP--SNQLWDDKDLELRADMDRLVEDGSLDDNVESF-LSHDD----TDPRDAGGRGMDVSQGFSFKEA 626 (913)
Q Consensus 554 ~~~s~dg~~~~~~~--~~~vWd~~~g~~~~~~~~~~~~g~~d~~v~~~-~~~d~----~~~~d~~~~~~~~~~~~~~~~~ 626 (913)
+.++++|..+++.. .+.+-|+.++... +. ....+ .++.+..+ +.+|. ...+....+.|.+..+ +.+
T Consensus 25 ~~~s~nG~~L~t~~~d~Vi~idv~t~~~~--l~-s~~~e-d~d~ita~~l~~d~~~L~~a~rs~llrv~~L~tg---k~i 97 (775)
T KOG0319|consen 25 VAWSSNGQHLYTACGDRVIIIDVATGSIA--LP-SGSNE-DEDEITALALTPDEEVLVTASRSQLLRVWSLPTG---KLI 97 (775)
T ss_pred eeECCCCCEEEEecCceEEEEEccCCcee--cc-cCCcc-chhhhheeeecCCccEEEEeeccceEEEEEcccc---hHh
Confidence 78899999888743 3566788887652 11 11111 11122222 22322 1223334455655555 778
Q ss_pred eEeec-CCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCC--EEEEEeCCCeEEEEE
Q 002519 627 NSVRA-STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP--RLATSSFDKTVRVWD 703 (913)
Q Consensus 627 ~~l~~-H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~--~Lasgs~Dg~V~Iwd 703 (913)
+.++. |+++|..++|+|.|.+|++|+.|+.|+|||+..+.+...|++|.+.|.++.|+|+-. .|++|..|++|++||
T Consensus 98 rswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwn 177 (775)
T KOG0319|consen 98 RSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWN 177 (775)
T ss_pred HhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEE
Confidence 88887 999999999999999999999999999999999999999999999999999999865 589999999999999
Q ss_pred cCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEe--------------------------
Q 002519 704 ADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF-------------------------- 757 (913)
Q Consensus 704 l~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~-------------------------- 757 (913)
+.+...++.++..|.+.|+++.|.+|+..++ +++.|..|.+||+...++.++.
T Consensus 178 l~~~~tcl~~~~~H~S~vtsL~~~~d~~~~l-s~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~Ta 256 (775)
T KOG0319|consen 178 LNDKRTCLHTMILHKSAVTSLAFSEDSLELL-SVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITA 256 (775)
T ss_pred cccCchHHHHHHhhhhheeeeeeccCCceEE-EeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEe
Confidence 9975667888899999999999999977666 8888999999997533211100
Q ss_pred --------------------eCC----------------------------------------------ceEEE------
Q 002519 758 --------------------KGG----------------------------------------------TAQMR------ 765 (913)
Q Consensus 758 --------------------~~~----------------------------------------------~~~v~------ 765 (913)
+.. +..++
T Consensus 257 G~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~ 336 (775)
T KOG0319|consen 257 GGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEE 336 (775)
T ss_pred cCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCcc
Confidence 000 00000
Q ss_pred ----------------------------------Ee--cCCCEEEEEEcCCeEEEEECCCCe------------------
Q 002519 766 ----------------------------------FQ--PHLGRYLAAAAENVVSILDAETQA------------------ 791 (913)
Q Consensus 766 ----------------------------------~s--~~~~~ll~~~~dg~I~i~D~~t~~------------------ 791 (913)
.. ..+..+++++.|.++++|.++++.
T Consensus 337 ~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svga 416 (775)
T KOG0319|consen 337 SHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGA 416 (775)
T ss_pred ceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccce
Confidence 00 122245555666677776442110
Q ss_pred ----------------------------------EEE----EecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCC
Q 002519 792 ----------------------------------CRL----SLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGS 832 (913)
Q Consensus 792 ----------------------------------~~~----~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~ 832 (913)
.+. +...|...|++++++|+.++|++|+.| +.+||++..
T Consensus 417 va~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~-- 494 (775)
T KOG0319|consen 417 VAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQ-- 494 (775)
T ss_pred eeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccC--
Confidence 000 123477888889999998999999999 889999873
Q ss_pred CCceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEE
Q 002519 833 EGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKL 911 (913)
Q Consensus 833 ~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~Lasgs~DG~I~I 911 (913)
......+.+|...+.++.|++....+++++.|++|+||.+.+..++ ++.+|+..|..+.|-.+++.|+||+.||.|+|
T Consensus 495 -~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKl 573 (775)
T KOG0319|consen 495 -LRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKL 573 (775)
T ss_pred -ceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEE
Confidence 4788999999999999999999999999999999999999999998 88999999999999999999999999999999
Q ss_pred eC
Q 002519 912 WK 913 (913)
Q Consensus 912 Wd 913 (913)
|+
T Consensus 574 Wn 575 (775)
T KOG0319|consen 574 WN 575 (775)
T ss_pred Ee
Confidence 96
No 30
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=1.8e-30 Score=321.57 Aligned_cols=282 Identities=18% Similarity=0.305 Sum_probs=238.1
Q ss_pred eecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCC----c----eeeEeccCCCCeEEEEECCC-CCEEEEEeCCCeE
Q 002519 629 VRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL----K----SKTNLEEHSSLITDVRFSPS-MPRLATSSFDKTV 699 (913)
Q Consensus 629 l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~----~----~~~~l~~h~~~V~~l~fspd-g~~Lasgs~Dg~V 699 (913)
+..|.+.|++++|+++|++||+|+.|++|+|||+... . .+..+. +...|.+++|++. +.+|++++.||+|
T Consensus 479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v 557 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVV 557 (793)
T ss_pred ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeE
Confidence 4569999999999999999999999999999997532 1 122333 3467999999874 7899999999999
Q ss_pred EEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeC--CceEEEEe-cCCCEEEEE
Q 002519 700 RVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG--GTAQMRFQ-PHLGRYLAA 776 (913)
Q Consensus 700 ~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~--~~~~v~~s-~~~~~ll~~ 776 (913)
+|||+.+ +..+..+.+|...|++++|+|.+..+|++|+.|++|++||++++.++..+.. .+.++.|. +++..++++
T Consensus 558 ~lWd~~~-~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~latg 636 (793)
T PLN00181 558 QVWDVAR-SQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFG 636 (793)
T ss_pred EEEECCC-CeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEE
Confidence 9999987 6778888999999999999985556778999999999999999988877654 44567775 457788899
Q ss_pred EcCCeEEEEECCCCe-EEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCC---CCceEEEeecCCCceEEEE
Q 002519 777 AAENVVSILDAETQA-CRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGS---EGECVHELSCNGNKFHSCV 851 (913)
Q Consensus 777 ~~dg~I~i~D~~t~~-~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~---~~~~i~~~~~~~~~i~~l~ 851 (913)
+.|+.|++||+++.+ .+..+.+|...|.++.|. ++.+|++++.| +|+|||++... ...++..+.+|...+..++
T Consensus 637 s~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~ 715 (793)
T PLN00181 637 SADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVG 715 (793)
T ss_pred eCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEE
Confidence 999999999998875 567788999999999997 67889999998 99999997542 2356788889999999999
Q ss_pred EeCCCCEEEEEEcCCeEEEEECCCCcEE--------------EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 002519 852 FHPTYPSLLVIGCYQSLELWNMSENKTM--------------TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 913 (913)
Q Consensus 852 ~sp~g~~l~s~s~dg~I~iwd~~~~~~~--------------~~~~h~~~V~~l~~spdg~~Lasgs~DG~I~IWd 913 (913)
|++++.+|++|+.|+.|+||+......+ ....|...|.+++|++++.+|++|+.||.|+||+
T Consensus 716 ~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~ 791 (793)
T PLN00181 716 LSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILE 791 (793)
T ss_pred EcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEe
Confidence 9999999999999999999998655322 1233556799999999999999999999999996
No 31
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=4e-30 Score=285.48 Aligned_cols=278 Identities=20% Similarity=0.320 Sum_probs=252.4
Q ss_pred cCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCC-CeEEEEEcCCCCc
Q 002519 631 ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFD-KTVRVWDADNPGY 709 (913)
Q Consensus 631 ~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D-g~V~Iwdl~~~~~ 709 (913)
.....|+|++|++..+.||+|-..|.+.+|.+....+++.+.-....|..+.|+..|.+||.||.. |.+-||++.+ ..
T Consensus 263 ~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqs-Es 341 (893)
T KOG0291|consen 263 QNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQS-ES 341 (893)
T ss_pred ccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeec-cc
Confidence 344889999999999999999999999999999999999999888999999999999999999874 8999999988 44
Q ss_pred eeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeCC---ceEEEEecCCCEEEEEEcCCeEEEEE
Q 002519 710 SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG---TAQMRFQPHLGRYLAAAAENVVSILD 786 (913)
Q Consensus 710 ~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~---~~~v~~s~~~~~ll~~~~dg~I~i~D 786 (913)
-+....+|...|++++++|||. ++++|++||.|+|||...+-|..+|..+ ++.+.|+..+..+++.+-||+|+.||
T Consensus 342 YVlKQQgH~~~i~~l~YSpDgq-~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwD 420 (893)
T KOG0291|consen 342 YVLKQQGHSDRITSLAYSPDGQ-LIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWD 420 (893)
T ss_pred eeeeccccccceeeEEECCCCc-EEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeee
Confidence 5666779999999999999987 6679999999999999999999999765 56788999999999999999999999
Q ss_pred CCCCeEEEEecCCC-CCeEEEEEcCCCCEEEEEeCC--eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEEEE
Q 002519 787 AETQACRLSLQGHT-KPIDSVCWDPSGELLASVSED--SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIG 863 (913)
Q Consensus 787 ~~t~~~~~~l~~h~-~~V~sl~~spdg~~l~s~s~d--~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s 863 (913)
+...+..+++.... ....|++.+|.|.++++|+.| .|.||++.+| ..+..+.+|+++|.+++|+|.+..|++++
T Consensus 421 lkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTG---qllDiLsGHEgPVs~l~f~~~~~~LaS~S 497 (893)
T KOG0291|consen 421 LKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTG---QLLDILSGHEGPVSGLSFSPDGSLLASGS 497 (893)
T ss_pred ecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecC---eeeehhcCCCCcceeeEEccccCeEEecc
Confidence 99999999988643 357889999999999999999 8999999988 88899999999999999999999999999
Q ss_pred cCCeEEEEECCCC-cEEEEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 002519 864 CYQSLELWNMSEN-KTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 913 (913)
Q Consensus 864 ~dg~I~iwd~~~~-~~~~~~~h~~~V~~l~~spdg~~Lasgs~DG~I~IWd 913 (913)
.|.+|++||+-.. ..+....+...|.+++|+|+|+.||++..||.|.|||
T Consensus 498 WDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~d 548 (893)
T KOG0291|consen 498 WDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVATLDGQITFFD 548 (893)
T ss_pred ccceEEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEEEEecceEEEEE
Confidence 9999999998654 3445566788899999999999999999999999997
No 32
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5e-31 Score=256.91 Aligned_cols=280 Identities=19% Similarity=0.327 Sum_probs=239.4
Q ss_pred ceeeeEeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEE
Q 002519 623 FKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVW 702 (913)
Q Consensus 623 ~~~~~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iw 702 (913)
-+..+.+..|.+.|.++.|+-||+|.++++.|++|++|+...+.+++++.+|...|.+++.+.|+..|++|+.|+.|.+|
T Consensus 7 tkr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vw 86 (307)
T KOG0316|consen 7 TKRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVW 86 (307)
T ss_pred chhceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEE
Confidence 34667788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCe--eeEEee---CCceEEEEecCCCEEEEEE
Q 002519 703 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS--CTRVFK---GGTAQMRFQPHLGRYLAAA 777 (913)
Q Consensus 703 dl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~--~~~~~~---~~~~~v~~s~~~~~ll~~~ 777 (913)
|+.+ ++.++.|.+|.+.|+.+.|+.+. .++++|+.|..|++||.++.. .+..+. ..+.++. -.+..+++++
T Consensus 87 DV~T-Gkv~Rr~rgH~aqVNtV~fNees-SVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~--v~~heIvaGS 162 (307)
T KOG0316|consen 87 DVNT-GKVDRRFRGHLAQVNTVRFNEES-SVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSID--VAEHEIVAGS 162 (307)
T ss_pred Eccc-CeeeeecccccceeeEEEecCcc-eEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEE--ecccEEEeec
Confidence 9999 88999999999999999999875 477799999999999998764 444443 3344443 4456889999
Q ss_pred cCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEeecCCCc--eEEEEEeC
Q 002519 778 AENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNK--FHSCVFHP 854 (913)
Q Consensus 778 ~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~--i~~l~~sp 854 (913)
.||+++.||++.+.......+ .+|++++|+++++.+++++.| +|++.|-.++ +.+..+++|.+. -..|++..
T Consensus 163 ~DGtvRtydiR~G~l~sDy~g--~pit~vs~s~d~nc~La~~l~stlrLlDk~tG---klL~sYkGhkn~eykldc~l~q 237 (307)
T KOG0316|consen 163 VDGTVRTYDIRKGTLSSDYFG--HPITSVSFSKDGNCSLASSLDSTLRLLDKETG---KLLKSYKGHKNMEYKLDCCLNQ 237 (307)
T ss_pred cCCcEEEEEeecceeehhhcC--CcceeEEecCCCCEEEEeeccceeeecccchh---HHHHHhcccccceeeeeeeecc
Confidence 999999999999987765554 679999999999999999999 9999999887 666677777654 34667888
Q ss_pred CCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCC-eEEEEEeCCCCEEEEEeCCCcEEEe
Q 002519 855 TYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGL-IAALAVSTETGYVASASHDKFVKLW 912 (913)
Q Consensus 855 ~g~~l~s~s~dg~I~iwd~~~~~~~-~~~~h~~~-V~~l~~spdg~~Lasgs~DG~I~IW 912 (913)
...++++|+.||.|++||+.....+ .+..+... |.+++++|....|+++.. +.+.+|
T Consensus 238 sdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~-~~~~~~ 296 (307)
T KOG0316|consen 238 SDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATG-HGDLFW 296 (307)
T ss_pred cceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEecC-Cceece
Confidence 8889999999999999999999888 56666666 789999998877777764 345555
No 33
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=1.2e-32 Score=280.68 Aligned_cols=264 Identities=22% Similarity=0.461 Sum_probs=229.7
Q ss_pred cCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCce
Q 002519 631 ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYS 710 (913)
Q Consensus 631 ~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~ 710 (913)
.....|+|+.+. ...+++|..|++|+|||..+..+++.+.||++.|.|+.|. .+.|++|+.|.+|+|||+.+ +++
T Consensus 195 e~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~t-ge~ 269 (499)
T KOG0281|consen 195 ENSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNT-GEP 269 (499)
T ss_pred ccCCceEEEEec--chhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccC-Cch
Confidence 456789999985 4489999999999999999999999999999999999995 56999999999999999998 889
Q ss_pred eEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCe---eeEEeeCC---ceEEEEecCCCEEEEEEcCCeEEE
Q 002519 711 LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS---CTRVFKGG---TAQMRFQPHLGRYLAAAAENVVSI 784 (913)
Q Consensus 711 ~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~---~~~~~~~~---~~~v~~s~~~~~ll~~~~dg~I~i 784 (913)
+.++.+|...|..+.|+. .++++|+.|.+|.+||+.... +.+.+.++ ++.+.|+ .+++++++.|.+|++
T Consensus 270 l~tlihHceaVLhlrf~n---g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikv 344 (499)
T KOG0281|consen 270 LNTLIHHCEAVLHLRFSN---GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKV 344 (499)
T ss_pred hhHHhhhcceeEEEEEeC---CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEE
Confidence 999999999999999983 377799999999999998764 22334444 3444443 458889999999999
Q ss_pred EECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEEEE
Q 002519 785 LDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIG 863 (913)
Q Consensus 785 ~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s 863 (913)
|++.+++++.++.+|...|-|+.+ .|+++++|+.| +|++||+..| .|+..+.+|+.-|.++.| +.+.|++|+
T Consensus 345 W~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G---~cLRvLeGHEeLvRciRF--d~krIVSGa 417 (499)
T KOG0281|consen 345 WSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECG---ACLRVLEGHEELVRCIRF--DNKRIVSGA 417 (499)
T ss_pred Eeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEecccc---HHHHHHhchHHhhhheee--cCceeeecc
Confidence 999999999999999999988876 58999999999 9999999887 899999999999999999 456899999
Q ss_pred cCCeEEEEECCCCcE----------EEEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 002519 864 CYQSLELWNMSENKT----------MTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 913 (913)
Q Consensus 864 ~dg~I~iwd~~~~~~----------~~~~~h~~~V~~l~~spdg~~Lasgs~DG~I~IWd 913 (913)
.||+|+|||+..+.- ..+..|.+.|..+.|. ...|+++++|.+|.|||
T Consensus 418 YDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD--~fqIvsssHddtILiWd 475 (499)
T KOG0281|consen 418 YDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD--EFQIISSSHDDTILIWD 475 (499)
T ss_pred ccceEEEEecccccCCcccccchHHHhhhhccceeEEEeec--ceEEEeccCCCeEEEEE
Confidence 999999999976531 1566799999999984 45799999999999997
No 34
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=4.2e-31 Score=287.50 Aligned_cols=282 Identities=21% Similarity=0.385 Sum_probs=258.1
Q ss_pred eeeEeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEc
Q 002519 625 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDA 704 (913)
Q Consensus 625 ~~~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl 704 (913)
..+++..|+++|.||.|+|...+++++-++|.|.||+.++...++.+.....+|++.+|-.-.++|++|++|..||||+.
T Consensus 5 ~krk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfny 84 (794)
T KOG0276|consen 5 FKRKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNY 84 (794)
T ss_pred hhhHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEec
Confidence 34556679999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCC-eeeEEeeCCc---eEEEEecCC-CEEEEEEcC
Q 002519 705 DNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG-SCTRVFKGGT---AQMRFQPHL-GRYLAAAAE 779 (913)
Q Consensus 705 ~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~-~~~~~~~~~~---~~v~~s~~~-~~ll~~~~d 779 (913)
.+ ...+..|..|.+.|.||+.||....+| ++++|-+|++||.+.. .|..+|+++. ..++|.|.+ +.+++++-|
T Consensus 85 nt-~ekV~~FeAH~DyIR~iavHPt~P~vL-tsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLD 162 (794)
T KOG0276|consen 85 NT-GEKVKTFEAHSDYIRSIAVHPTLPYVL-TSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLD 162 (794)
T ss_pred cc-ceeeEEeeccccceeeeeecCCCCeEE-ecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeecc
Confidence 98 788999999999999999999988665 9999999999999875 6788888864 578899976 577888889
Q ss_pred CeEEEEECCCCeEEEEecCCCCCeEEEEEcCCC--CEEEEEeCC-eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCC
Q 002519 780 NVVSILDAETQACRLSLQGHTKPIDSVCWDPSG--ELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTY 856 (913)
Q Consensus 780 g~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg--~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g 856 (913)
++|+||.+....+.+++++|...|+|++|-+.| .+|++|++| +|+|||+.+. .|+.++.+|...|..++|+|.-
T Consensus 163 rTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk---~CV~TLeGHt~Nvs~v~fhp~l 239 (794)
T KOG0276|consen 163 RTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTK---SCVQTLEGHTNNVSFVFFHPEL 239 (794)
T ss_pred ccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchH---HHHHHhhcccccceEEEecCCC
Confidence 999999999999999999999999999999855 499999999 9999999776 8999999999999999999999
Q ss_pred CEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEE
Q 002519 857 PSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKL 911 (913)
Q Consensus 857 ~~l~s~s~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~Lasgs~DG~I~I 911 (913)
..|++|+.||+|+||+..+-+.. ++.-.-..|+|++-.+.++.|+.|.++|.|.|
T Consensus 240 piiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 240 PIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTV 295 (794)
T ss_pred cEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEEE
Confidence 99999999999999999887766 56666788999999999999999999998764
No 35
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=1.1e-30 Score=269.21 Aligned_cols=242 Identities=27% Similarity=0.526 Sum_probs=221.4
Q ss_pred eEeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCC-CceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcC
Q 002519 627 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT-LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDAD 705 (913)
Q Consensus 627 ~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~-~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~ 705 (913)
..+++|++.|.+|+|+..|++||+++.|-.+++||.++ .++++.+.+|+..|.+++|-|.|.+|++++.|.+|+.|+++
T Consensus 144 ~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~ 223 (406)
T KOG0295|consen 144 RSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECD 223 (406)
T ss_pred hhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecc
Confidence 35789999999999999999999999999999999986 78889999999999999999999999999999999999999
Q ss_pred CCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEee---CCceEEEEecCC------------
Q 002519 706 NPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQMRFQPHL------------ 770 (913)
Q Consensus 706 ~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~---~~~~~v~~s~~~------------ 770 (913)
+ +.++.+|.+|...|..++.+.||. ++++|+.|.+|++|-+.++.|...+. ..+.+++|.|..
T Consensus 224 t-g~cv~t~~~h~ewvr~v~v~~DGt-i~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~ 301 (406)
T KOG0295|consen 224 T-GYCVKTFPGHSEWVRMVRVNQDGT-IIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGST 301 (406)
T ss_pred c-ceeEEeccCchHhEEEEEecCCee-EEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCC
Confidence 9 899999999999999999998865 88899999999999999996655443 455666665432
Q ss_pred ---CEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEeecCCCc
Q 002519 771 ---GRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNK 846 (913)
Q Consensus 771 ---~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~ 846 (913)
..+.+++.|++|++||+.++.++.++.+|.++|..++|+|.|+||+++.+| +++|||+++. .|.+.+..|..-
T Consensus 302 ~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~---~cmk~~~ah~hf 378 (406)
T KOG0295|consen 302 NGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNL---QCMKTLEAHEHF 378 (406)
T ss_pred CCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccc---eeeeccCCCcce
Confidence 367778889999999999999999999999999999999999999999999 9999999876 899999999999
Q ss_pred eEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 002519 847 FHSCVFHPTYPSLLVIGCYQSLELWNM 873 (913)
Q Consensus 847 i~~l~~sp~g~~l~s~s~dg~I~iwd~ 873 (913)
++++.|+.+..++++|+-|.++++|..
T Consensus 379 vt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 379 VTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred eEEEecCCCCceEEeccccceeeeeec
Confidence 999999999999999999999999974
No 36
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=1.1e-29 Score=281.83 Aligned_cols=341 Identities=20% Similarity=0.331 Sum_probs=257.4
Q ss_pred CCCcccc--CCCCeEEeCCCcchhhhcccccccCCccCceeeecccCCC-----CCCCCCCcccccccCccceeeeEeec
Q 002519 559 DGAGTLT--SPSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDT-----DPRDAGGRGMDVSQGFSFKEANSVRA 631 (913)
Q Consensus 559 dg~~~~~--~~~~~vWd~~~g~~~~~~~~~~~~g~~d~~v~~~~~~d~~-----~~~d~~~~~~~~~~~~~~~~~~~l~~ 631 (913)
.|.+.+. ...+.+||.++|+....+-..... ..+.+....++. +.+|+.+++|+...+ ....++.+
T Consensus 33 ~Gr~va~~a~E~vn~WdlRtge~~~~l~~~~~k----~evt~l~~~~d~l~lAVGYaDGsVqif~~~s~---~~~~tfng 105 (888)
T KOG0306|consen 33 KGRAVAVSALEQVNIWDLRTGEIEKKLILLKKK----AEVTCLRSSDDILLLAVGYADGSVQIFSLESE---EILITFNG 105 (888)
T ss_pred CCcEEEEeccccEeEEeeecchhhhhhhhhccc----ceEEEeeccCCcceEEEEecCceEEeeccCCC---ceeeeecc
Confidence 3555544 335588999999776655432111 234444444443 356777888877655 67788999
Q ss_pred CCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCcee
Q 002519 632 STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSL 711 (913)
Q Consensus 632 H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~ 711 (913)
|...|+++.|+..|.+||+|+.|+.|.|||+-...-...+++|...|+..-|..+.++|+++|.|+.|++||+++ ..++
T Consensus 106 HK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~t-qhCf 184 (888)
T KOG0306|consen 106 HKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLET-QHCF 184 (888)
T ss_pred cccceEEEEEcccCceEeecCCCccEEEEEeccceeeEEeecchHHHhHHhccCCCeEEEEeccCceEEEEeccc-ceee
Confidence 999999999999999999999999999999998888999999999999999999889999999999999999998 7788
Q ss_pred EEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCC----------------C-------------------e---e
Q 002519 712 RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN----------------G-------------------S---C 753 (913)
Q Consensus 712 ~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~----------------~-------------------~---~ 753 (913)
.+...|.+.|+.+++++ .++++++.|+.+++|++.. | + |
T Consensus 185 ~Thvd~r~Eiw~l~~~~---~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c 261 (888)
T KOG0306|consen 185 ETHVDHRGEIWALVLDE---KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVC 261 (888)
T ss_pred eEEecccceEEEEEEec---ceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCcccEEEE
Confidence 88888888898888886 2556788888888888710 0 0 0
Q ss_pred -------------------------------------------------------------eEEe---------------
Q 002519 754 -------------------------------------------------------------TRVF--------------- 757 (913)
Q Consensus 754 -------------------------------------------------------------~~~~--------------- 757 (913)
++.+
T Consensus 262 ~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l 341 (888)
T KOG0306|consen 262 QGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLL 341 (888)
T ss_pred ecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEe
Confidence 0000
Q ss_pred ----------e------------------C---CceEEEEecCCCEEEEEEcCCeEEEEECCCCeE--------------
Q 002519 758 ----------K------------------G---GTAQMRFQPHLGRYLAAAAENVVSILDAETQAC-------------- 792 (913)
Q Consensus 758 ----------~------------------~---~~~~v~~s~~~~~ll~~~~dg~I~i~D~~t~~~-------------- 792 (913)
. + .+..++++.+ ..+++.+..+.|.||+..+.+|
T Consensus 342 ~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d-~~~~~Sga~~SikiWn~~t~kciRTi~~~y~l~~~F 420 (888)
T KOG0306|consen 342 ANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSD-SILLASGAGESIKIWNRDTLKCIRTITCGYILASKF 420 (888)
T ss_pred ecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecC-ceeeeecCCCcEEEEEccCcceeEEeccccEEEEEe
Confidence 0 0 0001111111 2233333345555565554444
Q ss_pred --------------------------EEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCC-----CceE---
Q 002519 793 --------------------------RLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSE-----GECV--- 837 (913)
Q Consensus 793 --------------------------~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~-----~~~i--- 837 (913)
+.++.+|++.|.+++.+||++.+++++.| +|++||+.--.. .+.+
T Consensus 421 vpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~ 500 (888)
T KOG0306|consen 421 VPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLK 500 (888)
T ss_pred cCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeec
Confidence 33456789999999999999999999999 999999842211 1111
Q ss_pred --EEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEe
Q 002519 838 --HELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLW 912 (913)
Q Consensus 838 --~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~Lasgs~DG~I~IW 912 (913)
..+ .-...|.++.+|||+++|+++--|.+|+||-+++.+.. .+.+|.-+|.|+.++||+++|+|||.|..|+||
T Consensus 501 ~~rtL-el~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiW 577 (888)
T KOG0306|consen 501 HTRTL-ELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIW 577 (888)
T ss_pred cceEE-eccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEe
Confidence 111 12567899999999999999999999999999998876 899999999999999999999999999999999
No 37
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.97 E-value=3.4e-31 Score=260.03 Aligned_cols=278 Identities=22% Similarity=0.321 Sum_probs=246.7
Q ss_pred EeecCCCCEEEEEEec---CCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEc
Q 002519 628 SVRASTSKVICCHFSS---DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDA 704 (913)
Q Consensus 628 ~l~~H~~~V~~l~fsp---dg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl 704 (913)
+..+|+.+|..++||| +|-+|++++.|+.-.+-+-+++.-+.+|.+|.+.|++..++.+..+-++++.|-+.+|||.
T Consensus 9 ~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a 88 (334)
T KOG0278|consen 9 TCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDA 88 (334)
T ss_pred EEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhh
Confidence 4578999999999986 8999999999999999999999999999999999999999999989999999999999999
Q ss_pred CCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCee----eEEeeCCceEEEEecCCCEEEEEEcCC
Q 002519 705 DNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC----TRVFKGGTAQMRFQPHLGRYLAAAAEN 780 (913)
Q Consensus 705 ~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~----~~~~~~~~~~v~~s~~~~~ll~~~~dg 780 (913)
-+ +..+..|. |..-|.+++|+.|.++|+ +|+.+..+||||++..+. +....+++..+.|...+..+++++.|+
T Consensus 89 ~t-gdelhsf~-hkhivk~~af~~ds~~ll-tgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~ 165 (334)
T KOG0278|consen 89 VT-GDELHSFE-HKHIVKAVAFSQDSNYLL-TGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDK 165 (334)
T ss_pred hh-hhhhhhhh-hhheeeeEEecccchhhh-ccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCC
Confidence 88 66677665 889999999999977666 999999999999987542 233445677788999999999999999
Q ss_pred eEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEE
Q 002519 781 VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLL 860 (913)
Q Consensus 781 ~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~ 860 (913)
+|++||.++++.+.++. ...+|+++.++++|++|.++....|++||..+. ..++.++. ...|.+..++|+...++
T Consensus 166 tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf---~~lKs~k~-P~nV~SASL~P~k~~fV 240 (334)
T KOG0278|consen 166 TVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSF---GLLKSYKM-PCNVESASLHPKKEFFV 240 (334)
T ss_pred ceEEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEEecCceeEEeccccc---cceeeccC-ccccccccccCCCceEE
Confidence 99999999999999887 567899999999999998888889999999766 44444443 56788999999999999
Q ss_pred EEEcCCeEEEEECCCCcEE-E-EcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 002519 861 VIGCYQSLELWNMSENKTM-T-LTAHEGLIAALAVSTETGYVASASHDKFVKLWK 913 (913)
Q Consensus 861 s~s~dg~I~iwd~~~~~~~-~-~~~h~~~V~~l~~spdg~~Lasgs~DG~I~IWd 913 (913)
+|+.|..++.||+.+++.+ . ..+|.++|.|+.|+|+|...++|+.||+|+||.
T Consensus 241 aGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQ 295 (334)
T KOG0278|consen 241 AGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQ 295 (334)
T ss_pred ecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEE
Confidence 9999999999999999988 3 379999999999999999999999999999993
No 38
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.97 E-value=7.3e-32 Score=281.28 Aligned_cols=260 Identities=25% Similarity=0.437 Sum_probs=224.2
Q ss_pred CCCcccccccCccceeeeEeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEecc-CCCCeEEEEECCCCC
Q 002519 610 AGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE-HSSLITDVRFSPSMP 688 (913)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~-h~~~V~~l~fspdg~ 688 (913)
+....+.++++..|.....+.+|.+.|+++.|+++|.++++|+.+|.|++|+..-.. ++.+.. |...|++++|+|++.
T Consensus 115 s~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnn-Vk~~~ahh~eaIRdlafSpnDs 193 (464)
T KOG0284|consen 115 SQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNN-VKIIQAHHAEAIRDLAFSPNDS 193 (464)
T ss_pred cccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhh-hHHhhHhhhhhhheeccCCCCc
Confidence 344456667777777778889999999999999999999999999999999976444 444444 559999999999999
Q ss_pred EEEEEeCCCeEEEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeCC---ceEEE
Q 002519 689 RLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG---TAQMR 765 (913)
Q Consensus 689 ~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~---~~~v~ 765 (913)
.|++||+||+|+|||... .+..+.+.+|.-.|.+++|+|... +|++++.|..|++||.+++.|+.++.++ +..+.
T Consensus 194 kF~t~SdDg~ikiWdf~~-~kee~vL~GHgwdVksvdWHP~kg-LiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~ 271 (464)
T KOG0284|consen 194 KFLTCSDDGTIKIWDFRM-PKEERVLRGHGWDVKSVDWHPTKG-LIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVK 271 (464)
T ss_pred eeEEecCCCeEEEEeccC-CchhheeccCCCCcceeccCCccc-eeEEccCCceeEeecCCCcchhhhhhhccceEEEEE
Confidence 999999999999999987 555677799999999999999854 7889999999999999999999877554 56688
Q ss_pred EecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCC-CEEEEEeCC-eEEEEECCCCCCCceEEEeecC
Q 002519 766 FQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSG-ELLASVSED-SVRVWTVGSGSEGECVHELSCN 843 (913)
Q Consensus 766 ~s~~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg-~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~ 843 (913)
|.+++++|++++.|..+++||+++.+.+.++++|+..|+++.|+|-. .+|++|+.| .|..|.+...+ .....-..|
T Consensus 272 f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~--p~~~i~~AH 349 (464)
T KOG0284|consen 272 FNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEE--PLGEIPPAH 349 (464)
T ss_pred EcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccc--cccCCCccc
Confidence 99999999999999999999999999999999999999999999954 488888888 99999986332 222233467
Q ss_pred CCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 002519 844 GNKFHSCVFHPTYPSLLVIGCYQSLELWNMS 874 (913)
Q Consensus 844 ~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~ 874 (913)
...|.+++|+|-|..|++|+.|.++++|.-.
T Consensus 350 d~~iwsl~~hPlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 350 DGEIWSLAYHPLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred ccceeeeeccccceeEeecCCCcceeeeccC
Confidence 8899999999999999999999999999753
No 39
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=3.6e-30 Score=285.76 Aligned_cols=278 Identities=23% Similarity=0.408 Sum_probs=253.8
Q ss_pred EeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Q 002519 628 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP 707 (913)
Q Consensus 628 ~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~ 707 (913)
.+.+|...|++++||.|...+++|+ .+.|+||+.++.++++++... .+.+..|.|.++++++|...|.+.|||+.+
T Consensus 368 ~~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~~~--y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS- 443 (888)
T KOG0306|consen 368 EIGGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTLKCIRTITCG--YILASKFVPGDRYIVLGTKNGELQVFDLAS- 443 (888)
T ss_pred eeccchhheeEEEeecCceeeeecC-CCcEEEEEccCcceeEEeccc--cEEEEEecCCCceEEEeccCCceEEEEeeh-
Confidence 4668999999999999988888775 678999999999999999754 899999999999999999999999999997
Q ss_pred CceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCC-----e----------eeEEeeCCceEEEEecCCCE
Q 002519 708 GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG-----S----------CTRVFKGGTAQMRFQPHLGR 772 (913)
Q Consensus 708 ~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~-----~----------~~~~~~~~~~~v~~s~~~~~ 772 (913)
...+.+...|.+.|++|+.+||+..++ +|+.|.+|++||..-- . ..-.+...+.++.++|++.+
T Consensus 444 ~~l~Eti~AHdgaIWsi~~~pD~~g~v-T~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~ 522 (888)
T KOG0306|consen 444 ASLVETIRAHDGAIWSISLSPDNKGFV-TGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKL 522 (888)
T ss_pred hhhhhhhhccccceeeeeecCCCCceE-EecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcE
Confidence 667788889999999999999988766 9999999999997521 1 11223456788999999999
Q ss_pred EEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEeecCCCceEEEE
Q 002519 773 YLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCV 851 (913)
Q Consensus 773 ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~ 851 (913)
++++--|++|+||-+.+.+....+.||.-+|.|+.++||++++++|+.| +|+||-+.-| .|-+.+..|...|.++.
T Consensus 523 LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFG---DCHKS~fAHdDSvm~V~ 599 (888)
T KOG0306|consen 523 LAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFG---DCHKSFFAHDDSVMSVQ 599 (888)
T ss_pred EEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccc---hhhhhhhcccCceeEEE
Confidence 9999999999999999999999999999999999999999999999999 9999999776 88889999999999999
Q ss_pred EeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 002519 852 FHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 913 (913)
Q Consensus 852 ~sp~g~~l~s~s~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~Lasgs~DG~I~IWd 913 (913)
|.|....+++++.|+.|+-||-...+.+ .+.+|...|+|++.+|+|.+++++|+|.+|++|.
T Consensus 600 F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE 662 (888)
T KOG0306|consen 600 FLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWE 662 (888)
T ss_pred EcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeee
Confidence 9999999999999999999999888777 8999999999999999999999999999999995
No 40
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=9.8e-30 Score=251.71 Aligned_cols=280 Identities=19% Similarity=0.271 Sum_probs=247.1
Q ss_pred eEeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceee--EeccCCCCeEEEEECCC-CCEEEEEeCCCeEEEEE
Q 002519 627 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKT--NLEEHSSLITDVRFSPS-MPRLATSSFDKTVRVWD 703 (913)
Q Consensus 627 ~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~--~l~~h~~~V~~l~fspd-g~~Lasgs~Dg~V~Iwd 703 (913)
+.+++|...|.+|+|+.+|..||+|+.|++++||+++..+..+ ..++|.+.|-.++|+|. ...|++++.|++|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 5678999999999999999999999999999999998765544 45689999999999875 45899999999999999
Q ss_pred cCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEe--eCCceEEEEecCCCEEEEEEcCCe
Q 002519 704 ADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF--KGGTAQMRFQPHLGRYLAAAAENV 781 (913)
Q Consensus 704 l~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~--~~~~~~v~~s~~~~~ll~~~~dg~ 781 (913)
++. ++++.......+.|. +.|+|+|.+++ +++.|..|.+.|.++.+....+ +..+..++|+-++..++.....|+
T Consensus 94 ~r~-~k~~~~i~~~~eni~-i~wsp~g~~~~-~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~ 170 (313)
T KOG1407|consen 94 IRS-GKCTARIETKGENIN-ITWSPDGEYIA-VGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGC 170 (313)
T ss_pred ecc-CcEEEEeeccCcceE-EEEcCCCCEEE-EecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCce
Confidence 998 666666554444444 88999988655 8899999999999998776654 456778899988888888888899
Q ss_pred EEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEE
Q 002519 782 VSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLL 860 (913)
Q Consensus 782 I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~ 860 (913)
|.|......+++..++.|.....||.|+|+|++|++|+.| .+.+||+. +..|++.+..++.+|..+.|+.+|++|+
T Consensus 171 v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~---ELiC~R~isRldwpVRTlSFS~dg~~lA 247 (313)
T KOG1407|consen 171 VEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVD---ELICERCISRLDWPVRTLSFSHDGRMLA 247 (313)
T ss_pred EEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChh---HhhhheeeccccCceEEEEeccCcceee
Confidence 9999999999999999999999999999999999999999 99999995 4588889999999999999999999999
Q ss_pred EEEcCCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEeCC---------CcEEEe
Q 002519 861 VIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHD---------KFVKLW 912 (913)
Q Consensus 861 s~s~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~D---------G~I~IW 912 (913)
+++.|..|-|=++.+|..+....++++...++|+|...+||.+++| |.|+||
T Consensus 248 SaSEDh~IDIA~vetGd~~~eI~~~~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiF 308 (313)
T KOG1407|consen 248 SASEDHFIDIAEVETGDRVWEIPCEGPTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIF 308 (313)
T ss_pred ccCccceEEeEecccCCeEEEeeccCCceeEEecCCCceeeEEecCCCCccccccceeEEe
Confidence 9999999999999999999989999999999999999999998865 566665
No 41
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=3.2e-31 Score=267.84 Aligned_cols=276 Identities=25% Similarity=0.438 Sum_probs=244.5
Q ss_pred CCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEec--------cCCCCeEEEEECCCCCEEEEEeCCCeEEEEE
Q 002519 632 STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE--------EHSSLITDVRFSPSMPRLATSSFDKTVRVWD 703 (913)
Q Consensus 632 H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~--------~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwd 703 (913)
..+-+-|..|||||.||++|+.||.|.||+..+|+..+.++ -+...|.|++|+.|...|++|+.||.|+||.
T Consensus 212 ~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWr 291 (508)
T KOG0275|consen 212 QKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWR 291 (508)
T ss_pred cccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEE
Confidence 45668899999999999999999999999999998776654 4788999999999999999999999999999
Q ss_pred cCCCCceeEEec-cCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeCCc---eEEEEecCCCEEEEEEcC
Q 002519 704 ADNPGYSLRTFM-GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGT---AQMRFQPHLGRYLAAAAE 779 (913)
Q Consensus 704 l~~~~~~~~~~~-~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~---~~v~~s~~~~~ll~~~~d 779 (913)
+.+ +.+++.|. .|...|+|+.|+.|+..++ +++.|-+|+|.-+++|++++.|+++. +...|.++|..+++++.|
T Consensus 292 i~t-G~ClRrFdrAHtkGvt~l~FSrD~SqiL-S~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsD 369 (508)
T KOG0275|consen 292 IET-GQCLRRFDRAHTKGVTCLSFSRDNSQIL-SASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSD 369 (508)
T ss_pred Eec-chHHHHhhhhhccCeeEEEEccCcchhh-cccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCC
Confidence 999 77777776 8999999999999988777 99999999999999999999999875 457799999999999999
Q ss_pred CeEEEEECCCCeEEEEecC--CCCCeEEEEEcCCCC-EEEEEeCC-eEEEEECCCCCCCceEEEeec---CCCceEEEEE
Q 002519 780 NVVSILDAETQACRLSLQG--HTKPIDSVCWDPSGE-LLASVSED-SVRVWTVGSGSEGECVHELSC---NGNKFHSCVF 852 (913)
Q Consensus 780 g~I~i~D~~t~~~~~~l~~--h~~~V~sl~~spdg~-~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~---~~~~i~~l~~ 852 (913)
|+|++|+.++.+|+.+++. .+-+|.++-..|... .+++|... +|+|.++.. ..++.+.. .++.+.+++.
T Consensus 370 gtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qG----QvVrsfsSGkREgGdFi~~~l 445 (508)
T KOG0275|consen 370 GTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQG----QVVRSFSSGKREGGDFINAIL 445 (508)
T ss_pred ccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccc----eEEeeeccCCccCCceEEEEe
Confidence 9999999999999998874 455788888888554 67777766 999998853 44444433 3567889999
Q ss_pred eCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 002519 853 HPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 913 (913)
Q Consensus 853 sp~g~~l~s~s~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~Lasgs~DG~I~IWd 913 (913)
+|.|.++++.+.|+.++.|.+.+|++. ++..|+..|..++-+|..+.||+-++||.+++|+
T Consensus 446 SpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 446 SPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred cCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence 999999999999999999999999877 7889999999999999999999999999999996
No 42
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.97 E-value=1.9e-29 Score=250.36 Aligned_cols=279 Identities=16% Similarity=0.257 Sum_probs=237.6
Q ss_pred EeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Q 002519 628 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP 707 (913)
Q Consensus 628 ~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~ 707 (913)
.+.+|..+++-|.|+.+|.+|++++.|.++.||-..+|+.+.++.+|.+.|+|++.+.+.++|++|+.|.++++||+++
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~t- 83 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVET- 83 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCC-
Confidence 4678999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CceeEEeccCCCCeEEEEEcCCCCeEEEEEe----CCCcEEEEEcCC-------CeeeEEee---CCceEEEEecCCCEE
Q 002519 708 GYSLRTFMGHSASVMSLDFHPNKDDLICSCD----GDGEIRYWSINN-------GSCTRVFK---GGTAQMRFQPHLGRY 773 (913)
Q Consensus 708 ~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs----~Dg~I~iwdl~~-------~~~~~~~~---~~~~~v~~s~~~~~l 773 (913)
++.+..++ ....|..+.|+.+|..++++.. ..+.|.++|++. .++...+. ..++...|.+.+..+
T Consensus 84 Gk~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~i 162 (327)
T KOG0643|consen 84 GKQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETI 162 (327)
T ss_pred CcEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEE
Confidence 77777776 5678999999999886665442 347899999984 33344433 345677899999999
Q ss_pred EEEEcCCeEEEEECCCC-eEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEeecCCCceEEEE
Q 002519 774 LAAAAENVVSILDAETQ-ACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCV 851 (913)
Q Consensus 774 l~~~~dg~I~i~D~~t~-~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~ 851 (913)
++|..||.|.+||++++ +.+.....|...|+.+++++|..++++++.| +.++||+++. .+++.+.. ..++++.+
T Consensus 163 i~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl---~v~Kty~t-e~PvN~aa 238 (327)
T KOG0643|consen 163 IAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTL---EVLKTYTT-ERPVNTAA 238 (327)
T ss_pred EEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccce---eeEEEeee-ccccccee
Confidence 99999999999999998 5556667899999999999999999999999 9999999876 66666665 78999999
Q ss_pred EeCCCCEEEEEEcCCeEEEE--ECCCC------------cEE-EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEe
Q 002519 852 FHPTYPSLLVIGCYQSLELW--NMSEN------------KTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLW 912 (913)
Q Consensus 852 ~sp~g~~l~s~s~dg~I~iw--d~~~~------------~~~-~~~~h~~~V~~l~~spdg~~Lasgs~DG~I~IW 912 (913)
++|...+++.|+.-....|- +.+.+ +.+ .+.+|-++|++++|+|+|+..++|++||.|+|.
T Consensus 239 isP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h 314 (327)
T KOG0643|consen 239 ISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLH 314 (327)
T ss_pred cccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEE
Confidence 99999998888765433332 22222 222 678999999999999999999999999999984
No 43
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.97 E-value=4.7e-29 Score=257.48 Aligned_cols=283 Identities=19% Similarity=0.275 Sum_probs=243.0
Q ss_pred eeeEeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEc
Q 002519 625 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDA 704 (913)
Q Consensus 625 ~~~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl 704 (913)
.+..|..|++.|++|+.+|+.+++|||+.|....||++.++.....+.+|+..|+++.|+.||.+||||+.+|.|+||+.
T Consensus 56 S~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~ 135 (399)
T KOG0296|consen 56 SLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKV 135 (399)
T ss_pred ceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEc
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeCCc---eEEEEecCCCEEEEEEcCCe
Q 002519 705 DNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGT---AQMRFQPHLGRYLAAAAENV 781 (913)
Q Consensus 705 ~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~---~~v~~s~~~~~ll~~~~dg~ 781 (913)
.+ +.....+......|.-++|||.+. +|++|+.||.|.+|.+.++...+.+.++. ++-+|.|+|++++++..||+
T Consensus 136 st-g~~~~~~~~e~~dieWl~WHp~a~-illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgt 213 (399)
T KOG0296|consen 136 ST-GGEQWKLDQEVEDIEWLKWHPRAH-ILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGT 213 (399)
T ss_pred cc-CceEEEeecccCceEEEEeccccc-EEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCce
Confidence 98 555555656677888899999754 66699999999999999988888887754 45679999999999999999
Q ss_pred EEEEECCCCeEEEEecCC-CCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEee--------cCC---CceE
Q 002519 782 VSILDAETQACRLSLQGH-TKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELS--------CNG---NKFH 848 (913)
Q Consensus 782 I~i~D~~t~~~~~~l~~h-~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~--------~~~---~~i~ 848 (913)
|++|+..++.+++.+... .....++.++..+..++.|+.+ .+++....+++ .+.... .+. ..|.
T Consensus 214 i~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgK---Vv~~~n~~~~~l~~~~e~~~esve 290 (399)
T KOG0296|consen 214 IIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGK---VVNCNNGTVPELKPSQEELDESVE 290 (399)
T ss_pred EEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccce---EEEecCCCCccccccchhhhhhhh
Confidence 999999999999888743 3457788888888889988888 77777776663 222222 122 2344
Q ss_pred EEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 002519 849 SCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 913 (913)
Q Consensus 849 ~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~DG~I~IWd 913 (913)
.+.|+..-+..++|+-||+|.|||+...+......|...|..+.|-+ ..+|++++.||.|++||
T Consensus 291 ~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wD 354 (399)
T KOG0296|consen 291 SIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWD 354 (399)
T ss_pred hcccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcC-cchheeeccCceEEeee
Confidence 55566677889999999999999999999999999999999999998 77999999999999997
No 44
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=2.5e-29 Score=282.49 Aligned_cols=281 Identities=21% Similarity=0.379 Sum_probs=250.2
Q ss_pred EeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Q 002519 628 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP 707 (913)
Q Consensus 628 ~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~ 707 (913)
.++..+..|..++|+|...+++++-..|.|.+||..-+.++..|..|.++|..|+|+|...++++|++|-+|+||+.++
T Consensus 4 kfEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~- 82 (1202)
T KOG0292|consen 4 KFESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKT- 82 (1202)
T ss_pred hhhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEeccc-
Confidence 3555678899999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeCCc---eEEEEecCCCEEEEEEcCCeEEE
Q 002519 708 GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGT---AQMRFQPHLGRYLAAAAENVVSI 784 (913)
Q Consensus 708 ~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~---~~v~~s~~~~~ll~~~~dg~I~i 784 (913)
.+++.++.||-+.|..+.||+.-..+| ++++|-+|+||+..+++|+..+.++. .+..|+|....+++++-|-+|+|
T Consensus 83 rrclftL~GHlDYVRt~~FHheyPWIl-SASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRV 161 (1202)
T KOG0292|consen 83 RRCLFTLLGHLDYVRTVFFHHEYPWIL-SASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRV 161 (1202)
T ss_pred ceehhhhccccceeEEeeccCCCceEE-EccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEE
Confidence 889999999999999999999977665 99999999999999999999998874 56679999999999999999999
Q ss_pred EECCCC-----------------------------eEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCC
Q 002519 785 LDAETQ-----------------------------ACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEG 834 (913)
Q Consensus 785 ~D~~t~-----------------------------~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~ 834 (913)
||+... -..+.+.+|+..|+-++|+|.-.+|++|++| .|++|.+... +.
T Consensus 162 WDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnet-Ka 240 (1202)
T KOG0292|consen 162 WDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNET-KA 240 (1202)
T ss_pred EeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccc-cc
Confidence 998521 1234578999999999999999999999999 9999999654 23
Q ss_pred ceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEe
Q 002519 835 ECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLW 912 (913)
Q Consensus 835 ~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~Lasgs~DG~I~IW 912 (913)
-.+.+..+|.+.|.++.|+|.-+.|++.+.|++|+|||+...+.+ ++....+..+.++.+|..++++.|-+.| +.||
T Consensus 241 WEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAgHDsG-m~VF 318 (1202)
T KOG0292|consen 241 WEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAGHDSG-MIVF 318 (1202)
T ss_pred eeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeeecCCc-eEEE
Confidence 456677889999999999999999999999999999999998877 6666778899999999999887665444 5555
No 45
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=5.9e-29 Score=287.47 Aligned_cols=244 Identities=30% Similarity=0.490 Sum_probs=217.5
Q ss_pred eeEeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEEC-CCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEc
Q 002519 626 ANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHT-DTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDA 704 (913)
Q Consensus 626 ~~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~-~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl 704 (913)
...+.+|...|++++|+||+++|++++.|++|+|||+ ..+..++++++|...|++++|+|++++|++|+.|++|+|||+
T Consensus 196 ~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~ 275 (456)
T KOG0266|consen 196 LRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDV 275 (456)
T ss_pred hccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEec
Confidence 3445789999999999999999999999999999999 567899999999999999999999999999999999999999
Q ss_pred CCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCe--eeEEeeC-----CceEEEEecCCCEEEEEE
Q 002519 705 DNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS--CTRVFKG-----GTAQMRFQPHLGRYLAAA 777 (913)
Q Consensus 705 ~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~--~~~~~~~-----~~~~v~~s~~~~~ll~~~ 777 (913)
++ +.+++.+.+|...|++++|.+++.. |++++.|+.|+|||+.++. +...+.. .+..+.|+|++.++++++
T Consensus 276 ~~-~~~~~~l~~hs~~is~~~f~~d~~~-l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~ 353 (456)
T KOG0266|consen 276 RT-GECVRKLKGHSDGISGLAFSPDGNL-LVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSAS 353 (456)
T ss_pred cC-CeEEEeeeccCCceEEEEECCCCCE-EEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEec
Confidence 98 8999999999999999999999775 5577899999999999998 4555432 357788999999999999
Q ss_pred cCCeEEEEECCCCeEEEEecCCCCC---eEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEeecC-CCceEEEEE
Q 002519 778 AENVVSILDAETQACRLSLQGHTKP---IDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCN-GNKFHSCVF 852 (913)
Q Consensus 778 ~dg~I~i~D~~t~~~~~~l~~h~~~---V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~-~~~i~~l~~ 852 (913)
.|+.+++||+..++++..+.+|... +.+..+++.+.++++++.| .|++||+.++ ..+..+..| ...+..+.+
T Consensus 354 ~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~---~~~~~l~~h~~~~~~~~~~ 430 (456)
T KOG0266|consen 354 LDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSG---GILQRLEGHSKAAVSDLSS 430 (456)
T ss_pred CCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCcc---chhhhhcCCCCCceecccc
Confidence 9999999999999999999998774 4445567789999999999 9999999875 566677777 788999999
Q ss_pred eCCCCEEEEEE--cCCeEEEEECC
Q 002519 853 HPTYPSLLVIG--CYQSLELWNMS 874 (913)
Q Consensus 853 sp~g~~l~s~s--~dg~I~iwd~~ 874 (913)
++...++++++ .|+.|++|...
T Consensus 431 ~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 431 HPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred CCCcCeeeecCcCCCceEEEecCC
Confidence 99999999998 68899999754
No 46
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=8.8e-29 Score=269.49 Aligned_cols=241 Identities=24% Similarity=0.370 Sum_probs=217.4
Q ss_pred eEeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCC
Q 002519 627 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN 706 (913)
Q Consensus 627 ~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~ 706 (913)
+.++-..-+|+++.|-....++++|+.|..|+||+..+++.++.|+.|.+.|+||+.+|...+++|+|+|-+|++||.+.
T Consensus 49 ksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~ 128 (794)
T KOG0276|consen 49 KSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWEN 128 (794)
T ss_pred eeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccC
Confidence 34444566899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeC---CceEEEEecCC--CEEEEEEcCCe
Q 002519 707 PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHL--GRYLAAAAENV 781 (913)
Q Consensus 707 ~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~s~~~--~~ll~~~~dg~ 781 (913)
.-.+..+|.||...|.+|+|+|.+...|++++-|++|++|.+....+..++++ +++++++-+.+ .++++++.|.+
T Consensus 129 ~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~t 208 (794)
T KOG0276|consen 129 EWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLT 208 (794)
T ss_pred ceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCce
Confidence 77889999999999999999999999999999999999999999988888876 56788887655 58999999999
Q ss_pred EEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEE
Q 002519 782 VSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLL 860 (913)
Q Consensus 782 I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~ 860 (913)
|+|||..+..|+.++.+|...|..++|+|.-.+|++|++| +++||.-.+- +....+.-....+++++..+.++.++
T Consensus 209 iKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty---~lE~tLn~gleRvW~I~~~k~~~~i~ 285 (794)
T KOG0276|consen 209 IKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTY---KLEKTLNYGLERVWCIAAHKGDGKIA 285 (794)
T ss_pred EEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcce---ehhhhhhcCCceEEEEeecCCCCeEE
Confidence 9999999999999999999999999999999999999999 9999998765 45555556677899999999888888
Q ss_pred EEEcCCeEEE
Q 002519 861 VIGCYQSLEL 870 (913)
Q Consensus 861 s~s~dg~I~i 870 (913)
+|...|.|.|
T Consensus 286 vG~Deg~i~v 295 (794)
T KOG0276|consen 286 VGFDEGSVTV 295 (794)
T ss_pred EeccCCcEEE
Confidence 8877775543
No 47
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.97 E-value=3.3e-30 Score=269.41 Aligned_cols=284 Identities=21% Similarity=0.306 Sum_probs=243.7
Q ss_pred eeeeEeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCc--eeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEE
Q 002519 624 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK--SKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRV 701 (913)
Q Consensus 624 ~~~~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~--~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~I 701 (913)
.....+..|.+.|..+.|-++...|++|+.|..|++|++...+ .+.++.+..+.|+++.|.++++.+++++.|+.+++
T Consensus 166 ~~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~ 245 (459)
T KOG0288|consen 166 RALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRL 245 (459)
T ss_pred hhhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceee
Confidence 4456678899999999999998999999999999999998655 77888999999999999999999999999999999
Q ss_pred EEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeCCceEEEEecCCCEEEEEEcCCe
Q 002519 702 WDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENV 781 (913)
Q Consensus 702 wdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~s~~~~~ll~~~~dg~ 781 (913)
|+++. .....++.+|.+.|+++.|...... +++|+.|.+|++||+....|.+++-....+..+......++++-.|+.
T Consensus 246 Wnvd~-~r~~~TLsGHtdkVt~ak~~~~~~~-vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~~~~~~SgH~Dkk 323 (459)
T KOG0288|consen 246 WNVDS-LRLRHTLSGHTDKVTAAKFKLSHSR-VVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCSISDVISGHFDKK 323 (459)
T ss_pred eeccc-hhhhhhhcccccceeeehhhccccc-eeeccccchhhhhhhhhhheeccccccccccceEecceeeeecccccc
Confidence 99997 7788899999999999999876554 669999999999999999998876554444333333566777778999
Q ss_pred EEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEeecC----CCceEEEEEeCCC
Q 002519 782 VSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCN----GNKFHSCVFHPTY 856 (913)
Q Consensus 782 I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~----~~~i~~l~~sp~g 856 (913)
|++||+++..++.+...+. .|+++..++++..|.+++.| ++.++|+++.. ....+... ...++.++|+|++
T Consensus 324 vRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~e---I~~~~sA~g~k~asDwtrvvfSpd~ 399 (459)
T KOG0288|consen 324 VRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKE---IRQTFSAEGFKCASDWTRVVFSPDG 399 (459)
T ss_pred eEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeeccccc---EEEEeeccccccccccceeEECCCC
Confidence 9999999999999998765 89999999999988888888 99999998763 33333221 2347889999999
Q ss_pred CEEEEEEcCCeEEEEECCCCcEEE-Ecc-c-CCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 002519 857 PSLLVIGCYQSLELWNMSENKTMT-LTA-H-EGLIAALAVSTETGYVASASHDKFVKLWK 913 (913)
Q Consensus 857 ~~l~s~s~dg~I~iwd~~~~~~~~-~~~-h-~~~V~~l~~spdg~~Lasgs~DG~I~IWd 913 (913)
.|+++|+.||.|+||++.++++.. +.. + ...|++++|+|.|..|++++.++.+.+|.
T Consensus 400 ~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 400 SYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred ceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 999999999999999999999873 332 2 23699999999999999999999999994
No 48
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.97 E-value=5.3e-29 Score=266.09 Aligned_cols=291 Identities=16% Similarity=0.220 Sum_probs=235.7
Q ss_pred ccceeeeEeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCC----ceeeEe-ccCCCCeEEEEECCCCCEEEEEeC
Q 002519 621 FSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL----KSKTNL-EEHSSLITDVRFSPSMPRLATSSF 695 (913)
Q Consensus 621 ~~~~~~~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~----~~~~~l-~~h~~~V~~l~fspdg~~Lasgs~ 695 (913)
........+.+|+..|.++++.|.|.+|++|+.|.+|++||+... +..+.+ ......|.++.|++.+..|++.+.
T Consensus 155 IP~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg 234 (641)
T KOG0772|consen 155 IPGSHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSG 234 (641)
T ss_pred CCccceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEec
Confidence 355566778999999999999999999999999999999999732 222222 234567999999999999999998
Q ss_pred CCeEEEEEcCCCCcee------------EEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCee-eEEee----
Q 002519 696 DKTVRVWDADNPGYSL------------RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC-TRVFK---- 758 (913)
Q Consensus 696 Dg~V~Iwdl~~~~~~~------------~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~-~~~~~---- 758 (913)
...++|+|-+. ...+ ...+||...++|.+|+|+.+..|++|+.||++||||++..+. ..+|+
T Consensus 235 ~aqakl~DRdG-~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~ 313 (641)
T KOG0772|consen 235 SAQAKLLDRDG-FEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPA 313 (641)
T ss_pred CcceeEEccCC-ceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccC
Confidence 89999999874 2222 233589999999999999999999999999999999987543 23332
Q ss_pred ----CCceEEEEecCCCEEEEEEcCCeEEEEECCCCe---EEEEecCCCC--CeEEEEEcCCCCEEEEEeCC-eEEEEEC
Q 002519 759 ----GGTAQMRFQPHLGRYLAAAAENVVSILDAETQA---CRLSLQGHTK--PIDSVCWDPSGELLASVSED-SVRVWTV 828 (913)
Q Consensus 759 ----~~~~~v~~s~~~~~ll~~~~dg~I~i~D~~t~~---~~~~l~~h~~--~V~sl~~spdg~~l~s~s~d-~I~vwdl 828 (913)
..+..++|++++..|++++.||.|.+||..... ..+.-.+|.. .|+||+|++||++|++-+.| ++++||+
T Consensus 314 ~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDL 393 (641)
T KOG0772|consen 314 GGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDL 393 (641)
T ss_pred CCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeec
Confidence 245678899999999999999999999986542 2333456877 89999999999999999999 9999999
Q ss_pred CCCCCCceEEEeecCCCceEEEEEeCCCCEEEEEEc------CCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEE
Q 002519 829 GSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGC------YQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVA 901 (913)
Q Consensus 829 ~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~------dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~La 901 (913)
+..++...+.+--....+-+.|+|+|+.+.|++|+. .+.+.+||..+...+ .+.-....|..+.|+|.-+.|+
T Consensus 394 rq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~ 473 (641)
T KOG0772|consen 394 RQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIF 473 (641)
T ss_pred cccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhhee
Confidence 977544333333334556788999999999999875 368999999988877 5666688899999999988899
Q ss_pred EEeCCCcEEEe
Q 002519 902 SASHDKFVKLW 912 (913)
Q Consensus 902 sgs~DG~I~IW 912 (913)
.|+.||.++||
T Consensus 474 ~gsgdG~~~vy 484 (641)
T KOG0772|consen 474 AGSGDGTAHVY 484 (641)
T ss_pred eecCCCceEEE
Confidence 99999999986
No 49
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=8.5e-28 Score=245.27 Aligned_cols=284 Identities=21% Similarity=0.310 Sum_probs=239.3
Q ss_pred cceeeeEeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeC--CCeE
Q 002519 622 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF--DKTV 699 (913)
Q Consensus 622 ~~~~~~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~--Dg~V 699 (913)
.++..+.++.-.+.|.++.|+++|.+|++++.|.+|+|||..+++.++++..++..|..++|......++.++. |.+|
T Consensus 3 s~~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tI 82 (311)
T KOG1446|consen 3 SFRPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTI 82 (311)
T ss_pred ccccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCce
Confidence 35566677778899999999999999999999999999999999999999999999999999888888877776 8999
Q ss_pred EEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeC-CceEEEEecCCCEEEEEEc
Q 002519 700 RVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG-GTAQMRFQPHLGRYLAAAA 778 (913)
Q Consensus 700 ~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~-~~~~v~~s~~~~~ll~~~~ 778 (913)
|..++.+ .+.++.|.||...|.+|+.+|-++.+ ++++.|++|++||++..+|...+.. +...++|.|.|-.++++..
T Consensus 83 ryLsl~d-NkylRYF~GH~~~V~sL~~sP~~d~F-lS~S~D~tvrLWDlR~~~cqg~l~~~~~pi~AfDp~GLifA~~~~ 160 (311)
T KOG1446|consen 83 RYLSLHD-NKYLRYFPGHKKRVNSLSVSPKDDTF-LSSSLDKTVRLWDLRVKKCQGLLNLSGRPIAAFDPEGLIFALANG 160 (311)
T ss_pred EEEEeec-CceEEEcCCCCceEEEEEecCCCCeE-EecccCCeEEeeEecCCCCceEEecCCCcceeECCCCcEEEEecC
Confidence 9999998 78899999999999999999988654 5999999999999999998887765 4456789999888887777
Q ss_pred CCeEEEEECCCC--eEEEEec---CCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEeecCCC---ceEE
Q 002519 779 ENVVSILDAETQ--ACRLSLQ---GHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGN---KFHS 849 (913)
Q Consensus 779 dg~I~i~D~~t~--~~~~~l~---~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~---~i~~ 849 (913)
.+.|++||++.- .+..++. +.....+.|.|+|||++|+.+... .+++.|.-+|. .+..+..+.. .-..
T Consensus 161 ~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~---~~~tfs~~~~~~~~~~~ 237 (311)
T KOG1446|consen 161 SELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGT---VKSTFSGYPNAGNLPLS 237 (311)
T ss_pred CCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCc---EeeeEeeccCCCCccee
Confidence 779999999874 3333333 345678999999999988888777 89999998774 4444444333 3367
Q ss_pred EEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcc-cCCCeEEEEEeCCCCEEEEEeCCCcEEEe
Q 002519 850 CVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTA-HEGLIAALAVSTETGYVASASHDKFVKLW 912 (913)
Q Consensus 850 l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~-~~~~-h~~~V~~l~~spdg~~Lasgs~DG~I~IW 912 (913)
++|.|++++|++|+.||+|.+|++++++.+ .+.+ +.+++.++.|+|.--++++++ ..+.+|
T Consensus 238 a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~--s~l~fw 300 (311)
T KOG1446|consen 238 ATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSAS--SNLVFW 300 (311)
T ss_pred EEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecC--ceEEEE
Confidence 899999999999999999999999999887 5555 789999999999877777664 457777
No 50
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.97 E-value=2.4e-29 Score=258.14 Aligned_cols=242 Identities=22% Similarity=0.443 Sum_probs=221.8
Q ss_pred CceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEE
Q 002519 665 LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIR 744 (913)
Q Consensus 665 ~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~ 744 (913)
.+..+.+.+|.+.|.||++.|-+.+|++|+.|++|+|||+.+ +....++.||...|..+++++...++| +|+.|+.|+
T Consensus 141 wKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlat-g~LkltltGhi~~vr~vavS~rHpYlF-s~gedk~VK 218 (460)
T KOG0285|consen 141 WKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLAT-GQLKLTLTGHIETVRGVAVSKRHPYLF-SAGEDKQVK 218 (460)
T ss_pred ceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEccc-CeEEEeecchhheeeeeeecccCceEE-EecCCCeeE
Confidence 456677889999999999999999999999999999999998 888889999999999999999877665 999999999
Q ss_pred EEEcCCCeeeEEeeCC---ceEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC
Q 002519 745 YWSINNGSCTRVFKGG---TAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED 821 (913)
Q Consensus 745 iwdl~~~~~~~~~~~~---~~~v~~s~~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d 821 (913)
+||++..+.++.+.++ +.++..+|....+++++.|.+++|||+++...+..+.+|..+|.++.+.|...-+++|+.|
T Consensus 219 CwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D 298 (460)
T KOG0285|consen 219 CWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHD 298 (460)
T ss_pred EEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCC
Confidence 9999999999998875 4567788999999999999999999999999999999999999999999988899999999
Q ss_pred -eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCE
Q 002519 822 -SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGY 899 (913)
Q Consensus 822 -~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~ 899 (913)
+|++||++.+ +....+..|...+.+++.+|....|++++.| .|+-|++..+..+ .+.+|...|++++...|+ +
T Consensus 299 ~tvrlWDl~ag---kt~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~iintl~~nsD~-v 373 (460)
T KOG0285|consen 299 STVRLWDLRAG---KTMITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHNAIINTLSVNSDG-V 373 (460)
T ss_pred ceEEEeeeccC---ceeEeeecccceeeEEecCCchhhhhccCCc-cceeccCCccchhhccccccceeeeeeeccCc-e
Confidence 9999999987 6777888899999999999998877777665 6999999999877 788999999999998887 7
Q ss_pred EEEEeCCCcEEEeC
Q 002519 900 VASASHDKFVKLWK 913 (913)
Q Consensus 900 Lasgs~DG~I~IWd 913 (913)
+++|+++|.|.+||
T Consensus 374 ~~~G~dng~~~fwd 387 (460)
T KOG0285|consen 374 LVSGGDNGSIMFWD 387 (460)
T ss_pred EEEcCCceEEEEEe
Confidence 88999999999997
No 51
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.96 E-value=1e-28 Score=249.05 Aligned_cols=285 Identities=22% Similarity=0.388 Sum_probs=239.5
Q ss_pred eeeeEeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCC------------------CceeeEeccCCCCeEEEEECC
Q 002519 624 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT------------------LKSKTNLEEHSSLITDVRFSP 685 (913)
Q Consensus 624 ~~~~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~------------------~~~~~~l~~h~~~V~~l~fsp 685 (913)
-+...+..|...++|.+|++||.++|+|+.|..|+|+|++. .-.++++..|.+.|+++.|+|
T Consensus 103 yEt~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHP 182 (430)
T KOG0640|consen 103 YETKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHP 182 (430)
T ss_pred cceEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecc
Confidence 34566788999999999999999999999999999999861 134678888999999999999
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCC--ceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEe------
Q 002519 686 SMPRLATSSFDKTVRVWDADNPG--YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF------ 757 (913)
Q Consensus 686 dg~~Lasgs~Dg~V~Iwdl~~~~--~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~------ 757 (913)
...+|++|+.|++|++||+.... +..+.| .....|.+|.|+|.|+.++ .|..-.++++||+++..|...-
T Consensus 183 re~ILiS~srD~tvKlFDfsK~saKrA~K~~-qd~~~vrsiSfHPsGefll-vgTdHp~~rlYdv~T~QcfvsanPd~qh 260 (430)
T KOG0640|consen 183 RETILISGSRDNTVKLFDFSKTSAKRAFKVF-QDTEPVRSISFHPSGEFLL-VGTDHPTLRLYDVNTYQCFVSANPDDQH 260 (430)
T ss_pred hhheEEeccCCCeEEEEecccHHHHHHHHHh-hccceeeeEeecCCCceEE-EecCCCceeEEeccceeEeeecCccccc
Confidence 99999999999999999997522 112222 3567899999999988665 8888899999999998876543
Q ss_pred eCCceEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecC-CC-CCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCC
Q 002519 758 KGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQG-HT-KPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEG 834 (913)
Q Consensus 758 ~~~~~~v~~s~~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~-h~-~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~ 834 (913)
.+.+.++.+++.+..+++++.||.|+|||.-+++|+.++.. |. ..|.+..|..+|+||++.+.| .|++|.+.++
T Consensus 261 t~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~--- 337 (430)
T KOG0640|consen 261 TGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTG--- 337 (430)
T ss_pred ccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCC---
Confidence 45778899999999999999999999999999999998864 54 469999999999999999999 9999999887
Q ss_pred ceEEEeecCCC-----ceEEEEEeCCCCEEEEEEcC-CeEEEEECCCCcEE--EEcccCCCeEEEEEeCCCCEEEEEeCC
Q 002519 835 ECVHELSCNGN-----KFHSCVFHPTYPSLLVIGCY-QSLELWNMSENKTM--TLTAHEGLIAALAVSTETGYVASASHD 906 (913)
Q Consensus 835 ~~i~~~~~~~~-----~i~~l~~sp~g~~l~s~s~d-g~I~iwd~~~~~~~--~~~~h~~~V~~l~~spdg~~Lasgs~D 906 (913)
+++.++.+.+. --+...|+....+++.-... +.+.-||.++...+ .-.+|.+.|.++.-+|.+.-+.+|++|
T Consensus 338 R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD 417 (430)
T KOG0640|consen 338 RMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDD 417 (430)
T ss_pred ceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeeccc
Confidence 67777665421 12345677777777766553 68999999988766 456899999999999999999999999
Q ss_pred CcEEEeC
Q 002519 907 KFVKLWK 913 (913)
Q Consensus 907 G~I~IWd 913 (913)
..+++|.
T Consensus 418 ~raRFWy 424 (430)
T KOG0640|consen 418 FRARFWY 424 (430)
T ss_pred ceeeeee
Confidence 9999994
No 52
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.96 E-value=8.1e-30 Score=260.15 Aligned_cols=272 Identities=21% Similarity=0.402 Sum_probs=226.0
Q ss_pred CceeeecccCC---CCCCCCCCcccccccCccceeeeEeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeE
Q 002519 594 DNVESFLSHDD---TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTN 670 (913)
Q Consensus 594 ~~v~~~~~~d~---~~~~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~ 670 (913)
+.|.+.-..|+ .+..|..+++||. -++.....+.||++.|.|+.|. .+.|++|+.|.+|+|||+.+++++.+
T Consensus 198 kgVYClQYDD~kiVSGlrDnTikiWD~---n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~t 272 (499)
T KOG0281|consen 198 KGVYCLQYDDEKIVSGLRDNTIKIWDK---NSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLNT 272 (499)
T ss_pred CceEEEEecchhhhcccccCceEEecc---ccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhhH
Confidence 33444433443 3344555555554 3566788899999999999985 45999999999999999999999999
Q ss_pred eccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCc--eeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEc
Q 002519 671 LEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGY--SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSI 748 (913)
Q Consensus 671 l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~--~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl 748 (913)
+-+|...|..+.|+. .++++++.|.+|+|||+..+.. +.+.+.||...|+.+.|+. .+|++++.|.+|++|++
T Consensus 273 lihHceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~---kyIVsASgDRTikvW~~ 347 (499)
T KOG0281|consen 273 LIHHCEAVLHLRFSN--GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD---KYIVSASGDRTIKVWST 347 (499)
T ss_pred HhhhcceeEEEEEeC--CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc---ceEEEecCCceEEEEec
Confidence 999999999999974 4999999999999999987542 3467789999999999973 37889999999999999
Q ss_pred CCCeeeEEeeCCceEEEEecC-CCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEE
Q 002519 749 NNGSCTRVFKGGTAQMRFQPH-LGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVW 826 (913)
Q Consensus 749 ~~~~~~~~~~~~~~~v~~s~~-~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vw 826 (913)
.++++++++.++...+++.-. +..+++|++|.+|++||++.|.++..+.+|+.-|.++.|. .+.|++|..| +|+||
T Consensus 348 st~efvRtl~gHkRGIAClQYr~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd--~krIVSGaYDGkikvW 425 (499)
T KOG0281|consen 348 STCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD--NKRIVSGAYDGKIKVW 425 (499)
T ss_pred cceeeehhhhcccccceehhccCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeec--CceeeeccccceEEEE
Confidence 999999999998877766554 4556667779999999999999999999999999999996 5789999999 99999
Q ss_pred ECCCCCCC------ceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE
Q 002519 827 TVGSGSEG------ECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM 879 (913)
Q Consensus 827 dl~~~~~~------~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~ 879 (913)
|+..+... .|+..+..|.+.|..+.| |...|++++.|.+|.|||+..+..-
T Consensus 426 dl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWdFl~~~~~ 482 (499)
T KOG0281|consen 426 DLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWDFLNGPPS 482 (499)
T ss_pred ecccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccCCCeEEEEEcCCCCcc
Confidence 99876443 366777778888999988 4557999999999999999876543
No 53
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.96 E-value=2.8e-28 Score=252.72 Aligned_cols=276 Identities=21% Similarity=0.356 Sum_probs=233.2
Q ss_pred cCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCC---CEEEEEeCCCeEEEEEcCCC
Q 002519 631 ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSM---PRLATSSFDKTVRVWDADNP 707 (913)
Q Consensus 631 ~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg---~~Lasgs~Dg~V~Iwdl~~~ 707 (913)
.|.+.|.+|... ++.|++|++||.++|||. .|+..+.+.+|.++|.+++|.-.. ..|++++.|.++++|.++.+
T Consensus 103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~-~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~ 179 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDL-KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVG 179 (423)
T ss_pred cchhhhhhhccc--CceEEEeecCCeeEEEec-CCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCc
Confidence 488999999887 779999999999999996 578999999999999998885433 36999999999999999864
Q ss_pred Cce---eEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCC-------------------------eeeEEeeC
Q 002519 708 GYS---LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG-------------------------SCTRVFKG 759 (913)
Q Consensus 708 ~~~---~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~-------------------------~~~~~~~~ 759 (913)
... +....||...|-+|...+++.. +++|+.|..|+||+..+. ..+..+.+
T Consensus 180 ~~~~~~~~~~~GHk~~V~sVsv~~sgtr-~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~G 258 (423)
T KOG0313|consen 180 ENKVKALKVCRGHKRSVDSVSVDSSGTR-FCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEG 258 (423)
T ss_pred hhhhhHHhHhcccccceeEEEecCCCCe-EEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecc
Confidence 332 3344599999999999999775 559999999999993321 11122333
Q ss_pred ---CceEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCc
Q 002519 760 ---GTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGE 835 (913)
Q Consensus 760 ---~~~~v~~s~~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~ 835 (913)
.+..+.|++ ...+++++.|.+|+.||++++.++.++.+ ...++++.+++..++|++|+.| .|++||.+++....
T Consensus 259 Ht~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~ 336 (423)
T KOG0313|consen 259 HTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSV 336 (423)
T ss_pred cccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeec-CcceeEeecccccceeeecCCCCceeecCCCCCCCce
Confidence 345567777 68889999999999999999998888774 5679999999999999999999 99999999998778
Q ss_pred eEEEeecCCCceEEEEEeCCCCE-EEEEEcCCeEEEEECCCCc--EEEEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEe
Q 002519 836 CVHELSCNGNKFHSCVFHPTYPS-LLVIGCYQSLELWNMSENK--TMTLTAHEGLIAALAVSTETGYVASASHDKFVKLW 912 (913)
Q Consensus 836 ~i~~~~~~~~~i~~l~~sp~g~~-l~s~s~dg~I~iwd~~~~~--~~~~~~h~~~V~~l~~spdg~~Lasgs~DG~I~IW 912 (913)
....+.+|.+.|.+|.|+|...+ |++++.|+++++||+++.+ +..+.+|...|.++.|. ++.+|++||.|.+|+|+
T Consensus 337 v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~ 415 (423)
T KOG0313|consen 337 VSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLIVSGGADNKLRIF 415 (423)
T ss_pred eEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc-CCceEEeccCcceEEEe
Confidence 88999999999999999997765 6778899999999999876 44889999999999996 45689999999999998
Q ss_pred C
Q 002519 913 K 913 (913)
Q Consensus 913 d 913 (913)
+
T Consensus 416 ~ 416 (423)
T KOG0313|consen 416 K 416 (423)
T ss_pred c
Confidence 5
No 54
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.96 E-value=2.9e-29 Score=253.78 Aligned_cols=276 Identities=24% Similarity=0.412 Sum_probs=239.2
Q ss_pred eEEEEcCCCccccCC---CCeEEeCCCcchhhhcccccccCCccCceeeecccCCCCCCCCCCcccccccCccceeeeEe
Q 002519 553 LMMFGTDGAGTLTSP---SNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSV 629 (913)
Q Consensus 553 ~~~~s~dg~~~~~~~---~~~vWd~~~g~~~~~~~~~~~~g~~d~~v~~~~~~d~~~~~d~~~~~~~~~~~~~~~~~~~l 629 (913)
+..|||||.|+++++ -++|||..+|+++.++... .-..|
T Consensus 218 cA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQ--------------------------------------Aqd~f 259 (508)
T KOG0275|consen 218 CARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQ--------------------------------------AQDNF 259 (508)
T ss_pred heeeCCCCceEeeccccceeeeehhccchhhhhhhhh--------------------------------------hhcce
Confidence 568999999998854 4489999999998776422 11235
Q ss_pred ecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEec-cCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCC
Q 002519 630 RASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE-EHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG 708 (913)
Q Consensus 630 ~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~-~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~ 708 (913)
.-+.+.|.|++||.|..+||+|+.||+|+||.+.+|.+++.|. .|+..|+|+.|+.|+..|++++.|.+|||.-+.+ +
T Consensus 260 MMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKS-G 338 (508)
T KOG0275|consen 260 MMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKS-G 338 (508)
T ss_pred eecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEecccc-c
Confidence 5678899999999999999999999999999999999999998 8999999999999999999999999999999998 8
Q ss_pred ceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeC-----CceEEEEecCC-CEEEEEEcCCeE
Q 002519 709 YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG-----GTAQMRFQPHL-GRYLAAAAENVV 782 (913)
Q Consensus 709 ~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~-----~~~~v~~s~~~-~~ll~~~~dg~I 782 (913)
++++.|++|...|+...|.++|.++| +++.||+|++|+.++.+|+.+|+. .+..+...|.+ ..++++...++|
T Consensus 339 K~LKEfrGHsSyvn~a~ft~dG~~ii-saSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv 417 (508)
T KOG0275|consen 339 KCLKEFRGHSSYVNEATFTDDGHHII-SASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTV 417 (508)
T ss_pred hhHHHhcCccccccceEEcCCCCeEE-EecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeE
Confidence 89999999999999999999988776 999999999999999999999875 34455566655 567888888999
Q ss_pred EEEECCCCeEEEEecC---CCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCE
Q 002519 783 SILDAETQACRLSLQG---HTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPS 858 (913)
Q Consensus 783 ~i~D~~t~~~~~~l~~---h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~ 858 (913)
+|.++. |..++++.. ..+...+++.+|.|.++++.++| .++.|.+.++ ...+.+..|+..+..++-+|..+.
T Consensus 418 ~imn~q-GQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG---~LE~tl~VhEkdvIGl~HHPHqNl 493 (508)
T KOG0275|consen 418 YIMNMQ-GQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSG---KLERTLPVHEKDVIGLTHHPHQNL 493 (508)
T ss_pred EEEecc-ceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecC---ceeeeeecccccccccccCcccch
Confidence 999875 455555543 34567788899999999999999 8999999887 667788888999999999999999
Q ss_pred EEEEEcCCeEEEEE
Q 002519 859 LLVIGCYQSLELWN 872 (913)
Q Consensus 859 l~s~s~dg~I~iwd 872 (913)
|++-+.||.+++|.
T Consensus 494 lAsYsEDgllKLWk 507 (508)
T KOG0275|consen 494 LASYSEDGLLKLWK 507 (508)
T ss_pred hhhhcccchhhhcC
Confidence 99999999999995
No 55
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.96 E-value=8.1e-27 Score=249.90 Aligned_cols=241 Identities=33% Similarity=0.613 Sum_probs=215.1
Q ss_pred eEeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCC
Q 002519 627 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN 706 (913)
Q Consensus 627 ~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~ 706 (913)
..+..|...|.++.|++++++|++++.||.|++||+.+++.+..+..|...|.++.|++++.+|++++.|+.|++||+++
T Consensus 45 ~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 124 (289)
T cd00200 45 RTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVET 124 (289)
T ss_pred EEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCC
Confidence 44567888999999999999999999999999999999888999999999999999999988899888899999999986
Q ss_pred CCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeC---CceEEEEecCCCEEEEEEcCCeEE
Q 002519 707 PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAAENVVS 783 (913)
Q Consensus 707 ~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~s~~~~~ll~~~~dg~I~ 783 (913)
......+..|...|.+++|+|++. ++++++.|+.|++||+++++.+..+.. .+..+.|++++..+++++.++.|+
T Consensus 125 -~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~ 202 (289)
T cd00200 125 -GKCLTTLRGHTDWVNSVAFSPDGT-FVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIK 202 (289)
T ss_pred -cEEEEEeccCCCcEEEEEEcCcCC-EEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEE
Confidence 667777888999999999999854 666777799999999998887776654 467789999999999999999999
Q ss_pred EEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEEE
Q 002519 784 ILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVI 862 (913)
Q Consensus 784 i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~ 862 (913)
+||+++++.+..+..|...|.+++|++++.++++++.+ .|++||+.++ ..+..+..+...+.+++|++++.+|+++
T Consensus 203 i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 279 (289)
T cd00200 203 LWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTG---ECVQTLSGHTNSVTSLAWSPDGKRLASG 279 (289)
T ss_pred EEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCc---eeEEEccccCCcEEEEEECCCCCEEEEe
Confidence 99999999998888899999999999998899988856 9999999765 5666667788899999999999999999
Q ss_pred EcCCeEEEEE
Q 002519 863 GCYQSLELWN 872 (913)
Q Consensus 863 s~dg~I~iwd 872 (913)
+.|+.|++|+
T Consensus 280 ~~d~~i~iw~ 289 (289)
T cd00200 280 SADGTIRIWD 289 (289)
T ss_pred cCCCeEEecC
Confidence 9999999996
No 56
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.96 E-value=1.8e-27 Score=240.26 Aligned_cols=243 Identities=23% Similarity=0.373 Sum_probs=212.8
Q ss_pred eeeEeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCC-EEEEEeCCCeEEEEE
Q 002519 625 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP-RLATSSFDKTVRVWD 703 (913)
Q Consensus 625 ~~~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~-~Lasgs~Dg~V~Iwd 703 (913)
...++++|.+.|..+.|.+|+..|++++.|++|+.||+++|+.++.+++|...|+.+.-+.-|. +|.+++.||+++|||
T Consensus 82 N~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D 161 (338)
T KOG0265|consen 82 NFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWD 161 (338)
T ss_pred ceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEe
Confidence 4456779999999999999999999999999999999999999999999999999998554444 567788899999999
Q ss_pred cCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeCC---ceEEEEecCCCEEEEEEcCC
Q 002519 704 ADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG---TAQMRFQPHLGRYLAAAAEN 780 (913)
Q Consensus 704 l~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~---~~~v~~s~~~~~ll~~~~dg 780 (913)
++. +..++++. ....++++.|...+..++ +|+-|+.|++||++......++.++ ++.+..++++..+++-+.|.
T Consensus 162 ~R~-k~~~~t~~-~kyqltAv~f~d~s~qv~-sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~ 238 (338)
T KOG0265|consen 162 IRK-KEAIKTFE-NKYQLTAVGFKDTSDQVI-SGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDN 238 (338)
T ss_pred ecc-cchhhccc-cceeEEEEEeccccccee-eccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccc
Confidence 997 55666654 467899999998888776 9999999999999999999998875 56788999999999999999
Q ss_pred eEEEEECCCC----eEEEEecCCC----CCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEeecCCCceEEEE
Q 002519 781 VVSILDAETQ----ACRLSLQGHT----KPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCV 851 (913)
Q Consensus 781 ~I~i~D~~t~----~~~~~l~~h~----~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~ 851 (913)
++++||++-. +++..+.+|. .....++|+|+++.+.+++.| .+++||.... .++..+.+|.+.|.++.
T Consensus 239 tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r---~~lyklpGh~gsvn~~~ 315 (338)
T KOG0265|consen 239 TVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSR---RILYKLPGHYGSVNEVD 315 (338)
T ss_pred eEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccc---cEEEEcCCcceeEEEee
Confidence 9999999864 5677777754 345678999999999999999 9999999654 78999999999999999
Q ss_pred EeCCCCEEEEEEcCCeEEEEEC
Q 002519 852 FHPTYPSLLVIGCYQSLELWNM 873 (913)
Q Consensus 852 ~sp~g~~l~s~s~dg~I~iwd~ 873 (913)
|+|....|++++.|.+|++=.+
T Consensus 316 Fhp~e~iils~~sdk~i~lgei 337 (338)
T KOG0265|consen 316 FHPTEPIILSCSSDKTIYLGEI 337 (338)
T ss_pred ecCCCcEEEEeccCceeEeecc
Confidence 9999999999999999987543
No 57
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=4.2e-29 Score=257.14 Aligned_cols=279 Identities=18% Similarity=0.345 Sum_probs=234.7
Q ss_pred eeeeEeecCCCCEEEEEEecCC-CEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEE
Q 002519 624 KEANSVRASTSKVICCHFSSDG-KLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVW 702 (913)
Q Consensus 624 ~~~~~l~~H~~~V~~l~fspdg-~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iw 702 (913)
..+..+.+|.+.|.|++=+|.. ..+|+|+.||.|+|||+...++..++..|.+.|..|++.. ..+++++.|++|+.|
T Consensus 57 PFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~w 134 (433)
T KOG0268|consen 57 PFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQW 134 (433)
T ss_pred cchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeee
Confidence 4456789999999999999977 7899999999999999999999999999999999999987 789999999999999
Q ss_pred EcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeC---CceEEEEecCCCEEEEEE-c
Q 002519 703 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAA-A 778 (913)
Q Consensus 703 dl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~s~~~~~ll~~~-~ 778 (913)
.++. ..++++.+ ...+..|+-+.. ...++||+. .|.|||......+..+.- .+.++.|+|....+++++ +
T Consensus 135 k~~~--~p~~tilg-~s~~~gIdh~~~-~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~s 208 (433)
T KOG0268|consen 135 KIDG--PPLHTILG-KSVYLGIDHHRK-NSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCAS 208 (433)
T ss_pred eccC--Ccceeeec-cccccccccccc-cccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeeecc
Confidence 9985 36666654 455666766554 346668764 599999998888887764 346788999887766665 7
Q ss_pred CCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCC
Q 002519 779 ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYP 857 (913)
Q Consensus 779 dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~ 857 (913)
|+.|.+||++...++..+. -.-.-+.|||+|++..|+++++| .++.||++... ..+.....|...|.++.|+|.|.
T Consensus 209 DrsIvLyD~R~~~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~--~p~~v~~dhvsAV~dVdfsptG~ 285 (433)
T KOG0268|consen 209 DRSIVLYDLRQASPLKKVI-LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLS--RPLNVHKDHVSAVMDVDFSPTGQ 285 (433)
T ss_pred CCceEEEecccCCccceee-eeccccceecCccccceeeccccccceehhhhhhc--ccchhhcccceeEEEeccCCCcc
Confidence 9999999999998776654 23445789999988889999999 99999998653 56777788999999999999999
Q ss_pred EEEEEEcCCeEEEEECCCCcEEEE--cccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 002519 858 SLLVIGCYQSLELWNMSENKTMTL--TAHEGLIAALAVSTETGYVASASHDKFVKLWK 913 (913)
Q Consensus 858 ~l~s~s~dg~I~iwd~~~~~~~~~--~~h~~~V~~l~~spdg~~Lasgs~DG~I~IWd 913 (913)
.|++|+.|.+|+||.++.+....+ ...-..|.|+.|+-|.+||++||+|+.|++|+
T Consensus 286 EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWk 343 (433)
T KOG0268|consen 286 EFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWK 343 (433)
T ss_pred hhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeee
Confidence 999999999999999988876522 23345799999999999999999999999996
No 58
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.96 E-value=5.1e-29 Score=265.54 Aligned_cols=247 Identities=18% Similarity=0.311 Sum_probs=218.5
Q ss_pred CCceeeEeccCCCCeEEEEECC-CCCEEEEEeCCCeEEEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCc
Q 002519 664 TLKSKTNLEEHSSLITDVRFSP-SMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGE 742 (913)
Q Consensus 664 ~~~~~~~l~~h~~~V~~l~fsp-dg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~ 742 (913)
..+.+.++.+|...|+++.|.| .+.+|++++.|+.|+||++...+.++++|.+|..+|.+++|+.+|..+| +++.|+.
T Consensus 203 Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fL-S~sfD~~ 281 (503)
T KOG0282|consen 203 PKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFL-SASFDRF 281 (503)
T ss_pred cHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeee-eeeccee
Confidence 3466788999999999999999 7889999999999999999988999999999999999999999998777 9999999
Q ss_pred EEEEEcCCCeeeEEeeC--CceEEEEecCC-CEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEe
Q 002519 743 IRYWSINNGSCTRVFKG--GTAQMRFQPHL-GRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVS 819 (913)
Q Consensus 743 I~iwdl~~~~~~~~~~~--~~~~v~~s~~~-~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s 819 (913)
|++||+++|+++..|.. ...++.|.|++ +.+++|+.|+.|+.||+++++.+.++..|-+.|..|.|-++|+.+++.+
T Consensus 282 lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissS 361 (503)
T KOG0282|consen 282 LKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSS 361 (503)
T ss_pred eeeeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeec
Confidence 99999999999999875 45789999999 7888999999999999999999999999999999999999999999999
Q ss_pred CC-eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE----EEcccC--CCeEEEE
Q 002519 820 ED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM----TLTAHE--GLIAALA 892 (913)
Q Consensus 820 ~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~----~~~~h~--~~V~~l~ 892 (913)
+| +++||+.+.+-..+.+.... .....+|..+|+++++++-+.|+.|.+|.+...-.+ .+.+|. +.-..|.
T Consensus 362 Ddks~riWe~~~~v~ik~i~~~~--~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~ 439 (503)
T KOG0282|consen 362 DDKSVRIWENRIPVPIKNIADPE--MHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVD 439 (503)
T ss_pred cCccEEEEEcCCCccchhhcchh--hccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEE
Confidence 99 99999998774444443332 345678899999999999999999999987654333 566664 4566789
Q ss_pred EeCCCCEEEEEeCCCcEEEeC
Q 002519 893 VSTETGYVASASHDKFVKLWK 913 (913)
Q Consensus 893 ~spdg~~Lasgs~DG~I~IWd 913 (913)
|||||++|++|+.||.|.+||
T Consensus 440 fSpDG~~l~SGdsdG~v~~wd 460 (503)
T KOG0282|consen 440 FSPDGRTLCSGDSDGKVNFWD 460 (503)
T ss_pred EcCCCCeEEeecCCccEEEee
Confidence 999999999999999999997
No 59
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=3.4e-27 Score=265.38 Aligned_cols=241 Identities=25% Similarity=0.444 Sum_probs=208.6
Q ss_pred EeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Q 002519 628 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP 707 (913)
Q Consensus 628 ~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~ 707 (913)
.|.+|.++|+.|+|+|...++++|+.|.+|+||+.++.+++.++.+|-+.|..+.|++.-.+|+++|+|-+||||+..+
T Consensus 46 rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqs- 124 (1202)
T KOG0292|consen 46 RFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQS- 124 (1202)
T ss_pred hhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccC-
Confidence 3557999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCee-----------------------------eEEee
Q 002519 708 GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC-----------------------------TRVFK 758 (913)
Q Consensus 708 ~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~-----------------------------~~~~~ 758 (913)
+.++..+.||...|.|..|+|..+ +|++++-|-+||+||+..-+. ...++
T Consensus 125 r~~iavltGHnHYVMcAqFhptED-lIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLE 203 (1202)
T KOG0292|consen 125 RKCIAVLTGHNHYVMCAQFHPTED-LIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLE 203 (1202)
T ss_pred CceEEEEecCceEEEeeccCCccc-eEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeec
Confidence 889999999999999999999754 778999999999999863211 11223
Q ss_pred C---CceEEEEecCCCEEEEEEcCCeEEEEECCCCe--EEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCC
Q 002519 759 G---GTAQMRFQPHLGRYLAAAAENVVSILDAETQA--CRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGS 832 (913)
Q Consensus 759 ~---~~~~v~~s~~~~~ll~~~~dg~I~i~D~~t~~--~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~ 832 (913)
+ +++.++|+|....+++|+.|..|++|.....+ .+-+..+|.+.|.++-|+|.-++|++.++| +|+|||+...
T Consensus 204 GHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kR- 282 (1202)
T KOG0292|consen 204 GHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKR- 282 (1202)
T ss_pred ccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccc-
Confidence 3 45668899999999999999999999876543 455678999999999999999999999999 9999999765
Q ss_pred CCceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 002519 833 EGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMS 874 (913)
Q Consensus 833 ~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~ 874 (913)
..+..+......++.++.+|..+.+++ +.|+.+.||.+.
T Consensus 283 --t~v~tfrrendRFW~laahP~lNLfAA-gHDsGm~VFkle 321 (1202)
T KOG0292|consen 283 --TSVQTFRRENDRFWILAAHPELNLFAA-GHDSGMIVFKLE 321 (1202)
T ss_pred --cceeeeeccCCeEEEEEecCCcceeee-ecCCceEEEEEc
Confidence 777888777889999999999985555 455555555554
No 60
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=3.5e-27 Score=235.02 Aligned_cols=246 Identities=22% Similarity=0.389 Sum_probs=204.6
Q ss_pred cceeeeEe-ecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECC--CCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCe
Q 002519 622 SFKEANSV-RASTSKVICCHFSSDGKLLATGGHDKKAVLWHTD--TLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKT 698 (913)
Q Consensus 622 ~~~~~~~l-~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~--~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~ 698 (913)
++.++..+ .+|+..|+.|+|+|.|++||+|+.|.++.||.-. +.+++.++++|...|.|++|+++|++||+|+.|+.
T Consensus 49 s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKS 128 (312)
T KOG0645|consen 49 SWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKS 128 (312)
T ss_pred cEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCe
Confidence 46666665 4799999999999999999999999999999876 56889999999999999999999999999999999
Q ss_pred EEEEEcCCC--CceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCC---CeeeEEeeCC---ceEEEEecCC
Q 002519 699 VRVWDADNP--GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN---GSCTRVFKGG---TAQMRFQPHL 770 (913)
Q Consensus 699 V~Iwdl~~~--~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~---~~~~~~~~~~---~~~v~~s~~~ 770 (913)
|.||.+..+ -.++..+.+|...|..+.|+|... ||++++.|++|++|+-.. -.++.++.++ +-++.|.+.|
T Consensus 129 VWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~d-lL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G 207 (312)
T KOG0645|consen 129 VWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTED-LLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIG 207 (312)
T ss_pred EEEEEecCCCcEEEEeeeccccccccEEEEcCCcc-eeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCC
Confidence 999999843 356788999999999999999754 777999999999998772 2567777665 4568899999
Q ss_pred CEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCC---Cce-EEEeecCCC
Q 002519 771 GRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSE---GEC-VHELSCNGN 845 (913)
Q Consensus 771 ~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~---~~~-i~~~~~~~~ 845 (913)
.++++++.|++|+||-..+.-. ..|...++.+.|. ...|++++.| .|+||....... ... .+....|+.
T Consensus 208 ~rl~s~sdD~tv~Iw~~~~~~~----~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~ 281 (312)
T KOG0645|consen 208 SRLVSCSDDGTVSIWRLYTDLS----GMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEV 281 (312)
T ss_pred ceEEEecCCcceEeeeeccCcc----hhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhccccc
Confidence 9999999999999998663211 2377889999998 4578888888 999998764311 111 224456788
Q ss_pred ceEEEEEeCC-CCEEEEEEcCCeEEEEECC
Q 002519 846 KFHSCVFHPT-YPSLLVIGCYQSLELWNMS 874 (913)
Q Consensus 846 ~i~~l~~sp~-g~~l~s~s~dg~I~iwd~~ 874 (913)
.|+++.|.|. .+.|++++.||.|++|.+.
T Consensus 282 dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 282 DVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred ccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 9999999995 6789999999999999864
No 61
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.1e-27 Score=236.39 Aligned_cols=276 Identities=21% Similarity=0.373 Sum_probs=228.7
Q ss_pred EEEEEEecC-CCEEEEEe-------CCCcEEEEECCCCceeeEec--cCCCCeEEEEECCCC-CEEEEEeCCCeEEEEEc
Q 002519 636 VICCHFSSD-GKLLATGG-------HDKKAVLWHTDTLKSKTNLE--EHSSLITDVRFSPSM-PRLATSSFDKTVRVWDA 704 (913)
Q Consensus 636 V~~l~fspd-g~~Lasgs-------~Dg~V~vwd~~~~~~~~~l~--~h~~~V~~l~fspdg-~~Lasgs~Dg~V~Iwdl 704 (913)
=+++.|||- ..+||++. ..|++.|.++...+-+..+. .-.+.+.+|+|+++. +.+++++.||+++|||+
T Consensus 11 GysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~ 90 (311)
T KOG0277|consen 11 GYSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDL 90 (311)
T ss_pred cceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEecc
Confidence 357889882 23444432 36899999997444444433 346779999999874 57889999999999999
Q ss_pred CCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeCCceE---EEEecCC-CEEEEEEcCC
Q 002519 705 DNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQ---MRFQPHL-GRYLAAAAEN 780 (913)
Q Consensus 705 ~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~---v~~s~~~-~~ll~~~~dg 780 (913)
..+..++..++.|..+|.++.|++..+..+++++.|++|++|+......+.+|+++..+ ..|+|.. +.+++++.|+
T Consensus 91 ~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~ 170 (311)
T KOG0277|consen 91 TMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDG 170 (311)
T ss_pred CCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCc
Confidence 88788999999999999999999988888889999999999999999999999987654 5688876 4566677799
Q ss_pred eEEEEECCCCeEEEEecCCCCCeEEEEEcCC-CCEEEEEeCC-eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCC-C
Q 002519 781 VVSILDAETQACRLSLQGHTKPIDSVCWDPS-GELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTY-P 857 (913)
Q Consensus 781 ~I~i~D~~t~~~~~~l~~h~~~V~sl~~spd-g~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g-~ 857 (913)
.+++||++.......+..|...|.++.|+.. .++|++++.| .|++||+++-+ ..+.++.+|+..|..+.|+|.. .
T Consensus 171 ~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r--~pl~eL~gh~~AVRkvk~Sph~~~ 248 (311)
T KOG0277|consen 171 TLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLR--TPLFELNGHGLAVRKVKFSPHHAS 248 (311)
T ss_pred eEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhcc--ccceeecCCceEEEEEecCcchhh
Confidence 9999999987555559999999999999984 5588999999 99999998764 5688889999999999999965 4
Q ss_pred EEEEEEcCCeEEEEECCCCcEE--EEcccCCCeEEEEEeC-CCCEEEEEeCCCcEEEeC
Q 002519 858 SLLVIGCYQSLELWNMSENKTM--TLTAHEGLIAALAVST-ETGYVASASHDKFVKLWK 913 (913)
Q Consensus 858 ~l~s~s~dg~I~iwd~~~~~~~--~~~~h~~~V~~l~~sp-dg~~Lasgs~DG~I~IWd 913 (913)
.|++++.|-+++|||....... +...|..-|..+.|++ +..++|+++.|+.++||+
T Consensus 249 lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~ 307 (311)
T KOG0277|consen 249 LLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWN 307 (311)
T ss_pred HhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeec
Confidence 6778888889999998855433 6678899999999987 567999999999999996
No 62
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=3.4e-27 Score=252.26 Aligned_cols=274 Identities=19% Similarity=0.306 Sum_probs=238.5
Q ss_pred CCCEEEEEEecCCC-EEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCcee
Q 002519 633 TSKVICCHFSSDGK-LLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSL 711 (913)
Q Consensus 633 ~~~V~~l~fspdg~-~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~ 711 (913)
.+.|.+++|+|... -+|+.+ .-.|.||+..+...++++......|++++|..||++|++|...|.|+|||+.+ ...+
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~-r~iL 103 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKS-RVIL 103 (487)
T ss_pred cCcceeEecCCCCCCceEEec-ccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEecccc-HHHH
Confidence 46799999999543 344433 45799999999888888888999999999999999999999999999999665 6678
Q ss_pred EEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeCC---ceEEEEecCCC-EEEEEEcCCeEEEEEC
Q 002519 712 RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG---TAQMRFQPHLG-RYLAAAAENVVSILDA 787 (913)
Q Consensus 712 ~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~---~~~v~~s~~~~-~ll~~~~dg~I~i~D~ 787 (913)
+.+.+|..+|..+.|+|.++.++++|++|+.+++||+.+......+.++ +.+..|+|-.+ .+++|+.||.|++||+
T Consensus 104 R~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~Dt 183 (487)
T KOG0310|consen 104 RQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDT 183 (487)
T ss_pred HHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEe
Confidence 9999999999999999999999999999999999999998875566554 45667888766 5667778999999999
Q ss_pred CCC-eEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEEEEcCC
Q 002519 788 ETQ-ACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ 866 (913)
Q Consensus 788 ~t~-~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg 866 (913)
+.. ..+.++. |..+|.+++|-|.|..|++++...|+|||+.+|. ..+.....|...|+|+++..++..|++++-|+
T Consensus 184 R~~~~~v~eln-hg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~--qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~ 260 (487)
T KOG0310|consen 184 RSLTSRVVELN-HGCPVESVLALPSGSLIASAGGNSVKVWDLTTGG--QLLTSMFNHNKTVTCLRLASDSTRLLSGSLDR 260 (487)
T ss_pred ccCCceeEEec-CCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCc--eehhhhhcccceEEEEEeecCCceEeeccccc
Confidence 998 5566655 9999999999999999999999999999998764 44445555889999999999999999999999
Q ss_pred eEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEeCCCcEEE
Q 002519 867 SLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKL 911 (913)
Q Consensus 867 ~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~DG~I~I 911 (913)
.|++||+.+-+.+.-....++|.+++.+|++..++.|..||.+.+
T Consensus 261 ~VKVfd~t~~Kvv~s~~~~~pvLsiavs~dd~t~viGmsnGlv~~ 305 (487)
T KOG0310|consen 261 HVKVFDTTNYKVVHSWKYPGPVLSIAVSPDDQTVVIGMSNGLVSI 305 (487)
T ss_pred ceEEEEccceEEEEeeecccceeeEEecCCCceEEEecccceeee
Confidence 999999998888888888999999999999999999999998754
No 63
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=3.9e-27 Score=229.81 Aligned_cols=265 Identities=24% Similarity=0.346 Sum_probs=229.4
Q ss_pred ceEEEEcCCCccccCCCC---eEEeCCCcchhhhcccccccCCccCceeeecccCCCCCCCCCCcccccccCccceeeeE
Q 002519 552 PLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANS 628 (913)
Q Consensus 552 ~~~~~s~dg~~~~~~~~~---~vWd~~~g~~~~~~~~~~~~g~~d~~v~~~~~~d~~~~~d~~~~~~~~~~~~~~~~~~~ 628 (913)
-.+.|.-||.|+++.++. ++|++..| .++++
T Consensus 21 ~avryN~dGnY~ltcGsdrtvrLWNp~rg----------------------------------------------~likt 54 (307)
T KOG0316|consen 21 RAVRYNVDGNYCLTCGSDRTVRLWNPLRG----------------------------------------------ALIKT 54 (307)
T ss_pred EEEEEccCCCEEEEcCCCceEEeeccccc----------------------------------------------ceeee
Confidence 367888899998886544 66766544 35677
Q ss_pred eecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCC-
Q 002519 629 VRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP- 707 (913)
Q Consensus 629 l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~- 707 (913)
+.+|...|.+++.+.|...|++|+.|+.|.+||+.+|+.++.+.+|.+.|+.|+|+.+...+++|+.|.+|++||.++.
T Consensus 55 YsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s 134 (307)
T KOG0316|consen 55 YSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRS 134 (307)
T ss_pred ecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCC
Confidence 8899999999999999999999999999999999999999999999999999999999999999999999999999863
Q ss_pred CceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEee-CCceEEEEecCCCEEEEEEcCCeEEEEE
Q 002519 708 GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK-GGTAQMRFQPHLGRYLAAAAENVVSILD 786 (913)
Q Consensus 708 ~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~-~~~~~v~~s~~~~~ll~~~~dg~I~i~D 786 (913)
.+++..+....+.|.+|... ++.|++|+.||+++.||++.+.....+- .++++++|+++++..++++.|++|++.|
T Consensus 135 ~ePiQildea~D~V~Si~v~---~heIvaGS~DGtvRtydiR~G~l~sDy~g~pit~vs~s~d~nc~La~~l~stlrLlD 211 (307)
T KOG0316|consen 135 FEPIQILDEAKDGVSSIDVA---EHEIVAGSVDGTVRTYDIRKGTLSSDYFGHPITSVSFSKDGNCSLASSLDSTLRLLD 211 (307)
T ss_pred CCccchhhhhcCceeEEEec---ccEEEeeccCCcEEEEEeecceeehhhcCCcceeEEecCCCCEEEEeeccceeeecc
Confidence 35678888888999999997 4477799999999999999998876654 4789999999999999999999999999
Q ss_pred CCCCeEEEEecCCCCC--eEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEeecCCCc-eEEEEEeCCCCEEEEE
Q 002519 787 AETQACRLSLQGHTKP--IDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNK-FHSCVFHPTYPSLLVI 862 (913)
Q Consensus 787 ~~t~~~~~~l~~h~~~--V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~-i~~l~~sp~g~~l~s~ 862 (913)
-++++.+..+++|... -..+++.....++++|++| .|++||+... ..+..+..+... +.++.++|.-..|+++
T Consensus 212 k~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~---~~~sk~~~~~~v~v~dl~~hp~~~~f~~A 288 (307)
T KOG0316|consen 212 KETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDE---TQISKLSVVSTVIVTDLSCHPTMDDFITA 288 (307)
T ss_pred cchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccc---eeeeeeccCCceeEEeeecccCccceeEe
Confidence 9999999999999765 3456777778899999999 9999999765 667777776666 8999999998888887
Q ss_pred EcCCeE
Q 002519 863 GCYQSL 868 (913)
Q Consensus 863 s~dg~I 868 (913)
...+.+
T Consensus 289 ~~~~~~ 294 (307)
T KOG0316|consen 289 TGHGDL 294 (307)
T ss_pred cCCcee
Confidence 665433
No 64
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=2.2e-27 Score=269.46 Aligned_cols=243 Identities=22% Similarity=0.331 Sum_probs=201.0
Q ss_pred eeEee-cCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCC--------------------------------C-------
Q 002519 626 ANSVR-ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT--------------------------------L------- 665 (913)
Q Consensus 626 ~~~l~-~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~--------------------------------~------- 665 (913)
...+. +|.+.|+|+.||+||+|||+||.||.|+||.+.. .
T Consensus 259 ~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~ 338 (712)
T KOG0283|consen 259 VQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSS 338 (712)
T ss_pred eeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccc
Confidence 33455 8999999999999999999999999999997644 0
Q ss_pred ---------------------ceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCceeEEeccCCCCeEEE
Q 002519 666 ---------------------KSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSL 724 (913)
Q Consensus 666 ---------------------~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl 724 (913)
+++..|.||.+.|.+|.|+.++ +|+++|.|++||+|++.. ..++++|. |.+.|+||
T Consensus 339 ~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~-~~CL~~F~-HndfVTcV 415 (712)
T KOG0283|consen 339 SRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGR-KECLKVFS-HNDFVTCV 415 (712)
T ss_pred cccccCCccccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCC-cceeeEEe-cCCeeEEE
Confidence 1123456899999999999765 999999999999999997 78888886 99999999
Q ss_pred EEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEe--eCCceEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecC--C-
Q 002519 725 DFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF--KGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQG--H- 799 (913)
Q Consensus 725 ~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~--~~~~~~v~~s~~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~--h- 799 (913)
+|+|.++++|++|+-||.||||+|...+.+... +.-++.++|.|+|...++|+.+|.+++|+.+..+....+.. |
T Consensus 416 aFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~ 495 (712)
T KOG0283|consen 416 AFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHN 495 (712)
T ss_pred EecccCCCcEeecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeecc
Confidence 999998999999999999999999988877654 45678999999999999999999999999998876654432 1
Q ss_pred -----CCCeEEEEEcCCCC-EEEEEeCC-eEEEEECCCCCCCceEEEeecCC--CceEEEEEeCCCCEEEEEEcCCeEEE
Q 002519 800 -----TKPIDSVCWDPSGE-LLASVSED-SVRVWTVGSGSEGECVHELSCNG--NKFHSCVFHPTYPSLLVIGCYQSLEL 870 (913)
Q Consensus 800 -----~~~V~sl~~spdg~-~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~--~~i~~l~~sp~g~~l~s~s~dg~I~i 870 (913)
...|+.+.|.|... .|++.+.| .|+|||.+.. ..+..+++.. ..-....|+.||++|++++.|..|+|
T Consensus 496 ~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~---~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYi 572 (712)
T KOG0283|consen 496 KKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDK---DLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYI 572 (712)
T ss_pred CccccCceeeeeEecCCCCCeEEEecCCCceEEEeccch---hhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEE
Confidence 22799999998443 46666666 9999999665 4455555432 23456789999999999999999999
Q ss_pred EECC
Q 002519 871 WNMS 874 (913)
Q Consensus 871 wd~~ 874 (913)
|++.
T Consensus 573 W~~~ 576 (712)
T KOG0283|consen 573 WKND 576 (712)
T ss_pred EeCC
Confidence 9973
No 65
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.95 E-value=1e-26 Score=268.15 Aligned_cols=270 Identities=27% Similarity=0.476 Sum_probs=237.8
Q ss_pred cCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeE-eccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCc
Q 002519 631 ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTN-LEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGY 709 (913)
Q Consensus 631 ~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~-l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~ 709 (913)
.|...|.|..|. +.++++++.|.+|++||..++..+.. +.+|.+.|++++|...+.+|++|+.|.+++|||+.+ +.
T Consensus 206 ~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~s-g~ 282 (537)
T KOG0274|consen 206 TDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCST-GE 282 (537)
T ss_pred cCcchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCC-Cc
Confidence 367788888888 55899999999999999999999988 999999999999988788999999999999999887 89
Q ss_pred eeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeCCceEEE-EecCCCEEEEEEcCCeEEEEECC
Q 002519 710 SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMR-FQPHLGRYLAAAAENVVSILDAE 788 (913)
Q Consensus 710 ~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~-~s~~~~~ll~~~~dg~I~i~D~~ 788 (913)
+..++.+|.+.|.++...+. ++++|+.|.+|++|++.++.++..+.++...|. ...+++.+++++.|+.|.+||+.
T Consensus 283 C~~~l~gh~stv~~~~~~~~---~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~~~~lvsgs~d~~v~VW~~~ 359 (537)
T KOG0274|consen 283 CTHSLQGHTSSVRCLTIDPF---LLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLDEPLLVSGSYDGTVKVWDPR 359 (537)
T ss_pred EEEEecCCCceEEEEEccCc---eEeeccCCceEEEEeccCcceEEEeccccccEEEEEecCCEEEEEecCceEEEEEhh
Confidence 99999999999999998743 677899999999999999999999886544332 34448899999999999999999
Q ss_pred CCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEEEEcCCe
Q 002519 789 TQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQS 867 (913)
Q Consensus 789 t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~ 867 (913)
++++++++.+|...|.++.+... .++++|+.| +|++||+++.. +|+..+..|...+..+.+ .+++|++++.|++
T Consensus 360 ~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~--~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~ 434 (537)
T KOG0274|consen 360 TGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKR--KCIHTLQGHTSLVSSLLL--RDNFLVSSSADGT 434 (537)
T ss_pred hceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchh--hhhhhhcCCccccccccc--ccceeEecccccc
Confidence 99999999999999999988765 899999999 99999998754 788999998888865554 5678999999999
Q ss_pred EEEEECCCCcEE-EEcc-cCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 002519 868 LELWNMSENKTM-TLTA-HEGLIAALAVSTETGYVASASHDKFVKLWK 913 (913)
Q Consensus 868 I~iwd~~~~~~~-~~~~-h~~~V~~l~~spdg~~Lasgs~DG~I~IWd 913 (913)
|++||..+++++ .+.+ |...|.++++. ...+++++.||.+++||
T Consensus 435 Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~d 480 (537)
T KOG0274|consen 435 IKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWD 480 (537)
T ss_pred EEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEe
Confidence 999999999988 5555 56889998886 45788999999999997
No 66
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.95 E-value=9.6e-27 Score=244.67 Aligned_cols=276 Identities=24% Similarity=0.389 Sum_probs=242.3
Q ss_pred CCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCceeE
Q 002519 633 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLR 712 (913)
Q Consensus 633 ~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~ 712 (913)
...|+++...+....+++|+.|+.+.++|......+.+++||...|+.+.|+++...+++++.|..|+||.... .....
T Consensus 219 ~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~-~s~~~ 297 (506)
T KOG0289|consen 219 TPGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPL-SSEPT 297 (506)
T ss_pred CCCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeecccc-ccCcc
Confidence 35688888888778999999999999999999999999999999999999999999999999999999999987 44667
Q ss_pred EeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeCC-----ceEEEEecCCCEEEEEEcCCeEEEEEC
Q 002519 713 TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG-----TAQMRFQPHLGRYLAAAAENVVSILDA 787 (913)
Q Consensus 713 ~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~-----~~~v~~s~~~~~ll~~~~dg~I~i~D~ 787 (913)
....|..+|+.+..+|.|+++| +++.|+++.+.|++++.++...... ..+..|+|||-.|.++..|+.|+|||+
T Consensus 298 ~~~~h~~~V~~ls~h~tgeYll-sAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdl 376 (506)
T KOG0289|consen 298 SSRPHEEPVTGLSLHPTGEYLL-SASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDL 376 (506)
T ss_pred ccccccccceeeeeccCCcEEE-EecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEc
Confidence 7778999999999999998766 9999999999999999988776543 677899999999999999999999999
Q ss_pred CCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEEEEcCC
Q 002519 788 ETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ 866 (913)
Q Consensus 788 ~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg 866 (913)
.+...+..|.+|+++|..|.|+.+|.||+++++| .|++||+|.....+.+.. .....+.+++|...|.++++++.+=
T Consensus 377 ks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l--~~~~~v~s~~fD~SGt~L~~~g~~l 454 (506)
T KOG0289|consen 377 KSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQL--DEKKEVNSLSFDQSGTYLGIAGSDL 454 (506)
T ss_pred CCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeec--cccccceeEEEcCCCCeEEeeccee
Confidence 9999999999999999999999999999999999 799999987643333222 1233699999999999999998887
Q ss_pred eEEEEECCCCc--EE-EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEe
Q 002519 867 SLELWNMSENK--TM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLW 912 (913)
Q Consensus 867 ~I~iwd~~~~~--~~-~~~~h~~~V~~l~~spdg~~Lasgs~DG~I~IW 912 (913)
.|++++-.+.. ++ .+..|.+..+++.|.....+++++|.|..++|+
T Consensus 455 ~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~ 503 (506)
T KOG0289|consen 455 QVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLY 503 (506)
T ss_pred EEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEe
Confidence 77777755443 33 667788899999999999999999999999887
No 67
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2.5e-27 Score=247.35 Aligned_cols=248 Identities=20% Similarity=0.288 Sum_probs=213.8
Q ss_pred cceeeeEeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEec-cCCCCeEEEEECCCCCEEEEEeCCCeEE
Q 002519 622 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE-EHSSLITDVRFSPSMPRLATSSFDKTVR 700 (913)
Q Consensus 622 ~~~~~~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~-~h~~~V~~l~fspdg~~Lasgs~Dg~V~ 700 (913)
.++.++++.+|..+|..|.||||.++|++|+.|..+++||+.+|.....+. +|...+.+++|.|||..+++|+.|+.|.
T Consensus 258 ~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~ 337 (519)
T KOG0293|consen 258 HFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTII 337 (519)
T ss_pred ceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEE
Confidence 578899999999999999999999999999999999999999999888776 3568899999999999999999999999
Q ss_pred EEEcCCCCceeEEeccCC-CCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEe--eCCceEEEEecCCCEEEEEE
Q 002519 701 VWDADNPGYSLRTFMGHS-ASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF--KGGTAQMRFQPHLGRYLAAA 777 (913)
Q Consensus 701 Iwdl~~~~~~~~~~~~h~-~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~--~~~~~~v~~s~~~~~ll~~~ 777 (913)
.||++. ..+..+.+-. -.|.+++..+||+.++ +.+.|..|++|+.++..++..+ ..++.+++.+.++.++++.-
T Consensus 338 ~wdlDg--n~~~~W~gvr~~~v~dlait~Dgk~vl-~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL 414 (519)
T KOG0293|consen 338 MWDLDG--NILGNWEGVRDPKVHDLAITYDGKYVL-LVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNL 414 (519)
T ss_pred EecCCc--chhhcccccccceeEEEEEcCCCcEEE-EEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEc
Confidence 999984 4444444432 5699999999999877 5557999999999887666443 34678899999999999999
Q ss_pred cCCeEEEEECCCCeEEEEecCCCCC--eEEEEEcC-CCCEEEEEeCC-eEEEEECCCCCCCceEEEeecCCCceEEEEEe
Q 002519 778 AENVVSILDAETQACRLSLQGHTKP--IDSVCWDP-SGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFH 853 (913)
Q Consensus 778 ~dg~I~i~D~~t~~~~~~l~~h~~~--V~sl~~sp-dg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~s 853 (913)
.+..|++||++..+.+..+.||... |..-||-- +..++++|++| .|+||+..++ +.+.++.+|...|++++|+
T Consensus 415 ~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sg---kll~~LsGHs~~vNcVswN 491 (519)
T KOG0293|consen 415 QDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISG---KLLAVLSGHSKTVNCVSWN 491 (519)
T ss_pred ccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCC---ceeEeecCCcceeeEEecC
Confidence 9999999999999999999998764 44446655 44799999999 9999999887 8999999999999999999
Q ss_pred CCC-CEEEEEEcCCeEEEEECCC
Q 002519 854 PTY-PSLLVIGCYQSLELWNMSE 875 (913)
Q Consensus 854 p~g-~~l~s~s~dg~I~iwd~~~ 875 (913)
|.. .++++++.||+|+||....
T Consensus 492 P~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 492 PADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred CCCHHHhhccCCCCeEEEecCCc
Confidence 966 4688889999999998754
No 68
>PTZ00420 coronin; Provisional
Probab=99.95 E-value=9.7e-26 Score=260.93 Aligned_cols=247 Identities=15% Similarity=0.189 Sum_probs=200.4
Q ss_pred EeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCC-CCEEEEEeCCCeEEEEEcCCCCc-------eeEEeccCCCCeE
Q 002519 651 GGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPS-MPRLATSSFDKTVRVWDADNPGY-------SLRTFMGHSASVM 722 (913)
Q Consensus 651 gs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspd-g~~Lasgs~Dg~V~Iwdl~~~~~-------~~~~~~~h~~~V~ 722 (913)
|+.++.|+||+......+..+.+|.+.|.+|+|+|+ +.+|++|+.||+|+|||+.+.+. .+..+.+|...|.
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~ 129 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence 667889999999888888999999999999999997 78999999999999999986332 3456788999999
Q ss_pred EEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEee--CCceEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCC
Q 002519 723 SLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK--GGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHT 800 (913)
Q Consensus 723 sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~--~~~~~v~~s~~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~ 800 (913)
+|+|+|++..+|++++.|++|+|||++++..+..+. ..+.++.|++++..+++++.|+.|+|||+++++.+.++.+|.
T Consensus 130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~ 209 (568)
T PTZ00420 130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHD 209 (568)
T ss_pred EEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEeccc
Confidence 999999988888899999999999999988666553 457789999999999999999999999999999999999998
Q ss_pred CCeEE-----EEEcCCCCEEEEEeCC-----eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEE
Q 002519 801 KPIDS-----VCWDPSGELLASVSED-----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLEL 870 (913)
Q Consensus 801 ~~V~s-----l~~spdg~~l~s~s~d-----~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~i 870 (913)
+.+.+ ..|++++.+|++++.+ .|+|||++..........+..+...+......+++.++++|+.|+.|++
T Consensus 210 g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~ 289 (568)
T PTZ00420 210 GGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRY 289 (568)
T ss_pred CCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEE
Confidence 76543 2345888888887755 5999999865433333344444444444445566888999999999999
Q ss_pred EECCCCcEEEE--cccCCCeEEEEEeCCC
Q 002519 871 WNMSENKTMTL--TAHEGLIAALAVSTET 897 (913)
Q Consensus 871 wd~~~~~~~~~--~~h~~~V~~l~~spdg 897 (913)
|++..+....+ ..+..++.+++|.|..
T Consensus 290 ~e~~~~~~~~l~~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 290 YQHSLGSIRKVNEYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred EEccCCcEEeecccccCCCccceEEcccc
Confidence 99988765433 3366788999999964
No 69
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.95 E-value=8.1e-26 Score=280.20 Aligned_cols=238 Identities=18% Similarity=0.262 Sum_probs=199.3
Q ss_pred CCCEEEEEEec-CCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECC-CCCEEEEEeCCCeEEEEEcCCCCce
Q 002519 633 TSKVICCHFSS-DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSP-SMPRLATSSFDKTVRVWDADNPGYS 710 (913)
Q Consensus 633 ~~~V~~l~fsp-dg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fsp-dg~~Lasgs~Dg~V~Iwdl~~~~~~ 710 (913)
...|.+++|++ ++.+||+++.||+|+|||+.+++.+..+.+|...|++|+|+| ++.+|++|+.||+|+|||+++ +..
T Consensus 532 ~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~-~~~ 610 (793)
T PLN00181 532 RSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQ-GVS 610 (793)
T ss_pred cCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCC-CcE
Confidence 46799999987 578999999999999999999999999999999999999996 788999999999999999987 566
Q ss_pred eEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCe-eeEEeeC---CceEEEEecCCCEEEEEEcCCeEEEEE
Q 002519 711 LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS-CTRVFKG---GTAQMRFQPHLGRYLAAAAENVVSILD 786 (913)
Q Consensus 711 ~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~-~~~~~~~---~~~~v~~s~~~~~ll~~~~dg~I~i~D 786 (913)
+..+..+ ..|.++.|++....+|++|+.||.|++||+++.+ .+..+.+ .+..+.|. ++..+++++.|+.|++||
T Consensus 611 ~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd 688 (793)
T PLN00181 611 IGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWD 688 (793)
T ss_pred EEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEe
Confidence 6666644 6799999976656677899999999999998765 3444433 45677786 678899999999999999
Q ss_pred CCC------CeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCce--------E--EEeecCCCceEE
Q 002519 787 AET------QACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGEC--------V--HELSCNGNKFHS 849 (913)
Q Consensus 787 ~~t------~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~--------i--~~~~~~~~~i~~ 849 (913)
++. ..++..+.+|...+.+++|++++.+|++|+.| .|+||+......... + .....+...|.+
T Consensus 689 ~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~ 768 (793)
T PLN00181 689 LSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISS 768 (793)
T ss_pred CCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEE
Confidence 975 35778899999999999999999999999999 999999865421100 0 011234556999
Q ss_pred EEEeCCCCEEEEEEcCCeEEEEEC
Q 002519 850 CVFHPTYPSLLVIGCYQSLELWNM 873 (913)
Q Consensus 850 l~~sp~g~~l~s~s~dg~I~iwd~ 873 (913)
++|++++..|++++.+|.|+||++
T Consensus 769 v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 769 VCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EEEcCCCCeEEEecCCCcEEEEec
Confidence 999999999999999999999996
No 70
>PTZ00421 coronin; Provisional
Probab=99.95 E-value=1.7e-25 Score=257.99 Aligned_cols=263 Identities=15% Similarity=0.230 Sum_probs=207.1
Q ss_pred CCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCcee-------------eEeccCCCCeEEEEECC-CCCEEEEEeCCC
Q 002519 632 STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSK-------------TNLEEHSSLITDVRFSP-SMPRLATSSFDK 697 (913)
Q Consensus 632 H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~-------------~~l~~h~~~V~~l~fsp-dg~~Lasgs~Dg 697 (913)
|...|....+++|+..+++++.+..+..|+...+..+ ..+.+|.+.|++++|+| ++.+|++|+.|+
T Consensus 19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~Dg 98 (493)
T PTZ00421 19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDG 98 (493)
T ss_pred ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCC
Confidence 3445666666777666677666666666765433221 24778999999999999 888999999999
Q ss_pred eEEEEEcCCCC------ceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeC---CceEEEEec
Q 002519 698 TVRVWDADNPG------YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQP 768 (913)
Q Consensus 698 ~V~Iwdl~~~~------~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~s~ 768 (913)
+|+|||+.+.+ ..+..+.+|...|.+|+|+|++..+|++++.|++|+|||+++++.+..+.+ .+.+++|++
T Consensus 99 tIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~sp 178 (493)
T PTZ00421 99 TIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNL 178 (493)
T ss_pred EEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEEC
Confidence 99999997643 356788899999999999999877888999999999999999988877754 467899999
Q ss_pred CCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCC-eEEEEEcCCCCEEEEEe----CC-eEEEEECCCCCCCceEEEeec
Q 002519 769 HLGRYLAAAAENVVSILDAETQACRLSLQGHTKP-IDSVCWDPSGELLASVS----ED-SVRVWTVGSGSEGECVHELSC 842 (913)
Q Consensus 769 ~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~-V~sl~~spdg~~l~s~s----~d-~I~vwdl~~~~~~~~i~~~~~ 842 (913)
++..+++++.|+.|+|||+++++.+..+.+|... +..+.|.+++.+|++++ .| .|++||+++... .+.....
T Consensus 179 dG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~--p~~~~~~ 256 (493)
T PTZ00421 179 DGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMAS--PYSTVDL 256 (493)
T ss_pred CCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCC--ceeEecc
Confidence 9999999999999999999999999999988765 45678999888777654 34 899999987543 2332222
Q ss_pred -CCCceEEEEEeCCCCEEEEEE-cCCeEEEEECCCCcEEEE--cccCCCeEEEEEeCC
Q 002519 843 -NGNKFHSCVFHPTYPSLLVIG-CYQSLELWNMSENKTMTL--TAHEGLIAALAVSTE 896 (913)
Q Consensus 843 -~~~~i~~l~~sp~g~~l~s~s-~dg~I~iwd~~~~~~~~~--~~h~~~V~~l~~spd 896 (913)
....+..+.|++++.+|++++ .|+.|++||+.+++.+.. ..+...+.+++|.|.
T Consensus 257 d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk 314 (493)
T PTZ00421 257 DQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPK 314 (493)
T ss_pred CCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEeccc
Confidence 234566677999999999888 599999999999887633 235567788888774
No 71
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.95 E-value=3e-26 Score=266.26 Aligned_cols=277 Identities=20% Similarity=0.330 Sum_probs=234.1
Q ss_pred CCCCEEEEEEecCCCEEEEEe--CCCcEEEEECCC------------CceeeEeccCCCCeEEEEECCCCCEEEEEeCCC
Q 002519 632 STSKVICCHFSSDGKLLATGG--HDKKAVLWHTDT------------LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDK 697 (913)
Q Consensus 632 H~~~V~~l~fspdg~~Lasgs--~Dg~V~vwd~~~------------~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg 697 (913)
+...|.+|+.+|||..+|||+ .||.++||+.+. .+.+.+...|.+.|+|+.|++||++||+|++|+
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~ 91 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDR 91 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcc
Confidence 445699999999999999999 999999998652 234456678999999999999999999999999
Q ss_pred eEEEEEcCC------C-----------CceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeCC
Q 002519 698 TVRVWDADN------P-----------GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG 760 (913)
Q Consensus 698 ~V~Iwdl~~------~-----------~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~ 760 (913)
.|.||+... . -+++..+.+|+..|.+++|+|++. ++++++.|++|.|||.++.+++++++++
T Consensus 92 ~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~-~lvS~s~DnsViiwn~~tF~~~~vl~~H 170 (942)
T KOG0973|consen 92 LVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDS-LLVSVSLDNSVIIWNAKTFELLKVLRGH 170 (942)
T ss_pred eEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCcc-EEEEecccceEEEEccccceeeeeeecc
Confidence 999999872 1 125678889999999999999755 7779999999999999999998888775
Q ss_pred ---ceEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCC------CCeEEEEEcCCCCEEEEEeC----C-eEEEE
Q 002519 761 ---TAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHT------KPIDSVCWDPSGELLASVSE----D-SVRVW 826 (913)
Q Consensus 761 ---~~~v~~s~~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~------~~V~sl~~spdg~~l~s~s~----d-~I~vw 826 (913)
+..+.|.|-|.++++-+.|++|+||++.+..+.+.+.++. ..+..+.|+|||.+|++... . ++.|.
T Consensus 171 ~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~Ii 250 (942)
T KOG0973|consen 171 QSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAII 250 (942)
T ss_pred cccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEE
Confidence 5678999999999999999999999988877777776543 35788999999999998642 2 78888
Q ss_pred ECCCCCCCceEEEeecCCCceEEEEEeCC-------------CC----EEEEEEcCCeEEEEECCCCcEEE--EcccCCC
Q 002519 827 TVGSGSEGECVHELSCNGNKFHSCVFHPT-------------YP----SLLVIGCYQSLELWNMSENKTMT--LTAHEGL 887 (913)
Q Consensus 827 dl~~~~~~~~i~~~~~~~~~i~~l~~sp~-------------g~----~l~s~s~dg~I~iwd~~~~~~~~--~~~h~~~ 887 (913)
+..+ .++-..+-+|..++.++.|+|. +. .+++|+.|++|.||.....+.+. ..-....
T Consensus 251 eR~t---Wk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~S 327 (942)
T KOG0973|consen 251 ERGT---WKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKS 327 (942)
T ss_pred ecCC---ceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCc
Confidence 8744 3677788899999999999882 11 57888999999999998777663 3345678
Q ss_pred eEEEEEeCCCCEEEEEeCCCcEEEe
Q 002519 888 IAALAVSTETGYVASASHDKFVKLW 912 (913)
Q Consensus 888 V~~l~~spdg~~Lasgs~DG~I~IW 912 (913)
|.+++|+|||..|+.||.||+|.++
T Consensus 328 I~DmsWspdG~~LfacS~DGtV~~i 352 (942)
T KOG0973|consen 328 IVDMSWSPDGFSLFACSLDGTVALI 352 (942)
T ss_pred eeeeeEcCCCCeEEEEecCCeEEEE
Confidence 9999999999999999999999886
No 72
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.95 E-value=1.9e-27 Score=233.74 Aligned_cols=250 Identities=19% Similarity=0.270 Sum_probs=223.3
Q ss_pred eeeeEeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEE
Q 002519 624 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 703 (913)
Q Consensus 624 ~~~~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwd 703 (913)
.-+.+|.+|.+.|+..+++.+..+.|+++.|-+.+|||.-++..+..|. |...|.+++|+.|.++|++|+.++.+||||
T Consensus 50 dwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfd 128 (334)
T KOG0278|consen 50 DWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFD 128 (334)
T ss_pred CcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhh
Confidence 3467899999999999999999999999999999999999999999885 888999999999999999999999999999
Q ss_pred cCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEe--eCCceEEEEecCCCEEEEEEcCCe
Q 002519 704 ADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF--KGGTAQMRFQPHLGRYLAAAAENV 781 (913)
Q Consensus 704 l~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~--~~~~~~v~~s~~~~~ll~~~~dg~ 781 (913)
++.+..+...+.+|.+.|..+.|+.....+| +..+|++||+||.++++.+..+ +.++.++.+++++ .+++.+..+.
T Consensus 129 ln~p~App~E~~ghtg~Ir~v~wc~eD~~iL-SSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG-~ilTia~gss 206 (334)
T KOG0278|consen 129 LNRPKAPPKEISGHTGGIRTVLWCHEDKCIL-SSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDG-RILTIAYGSS 206 (334)
T ss_pred ccCCCCCchhhcCCCCcceeEEEeccCceEE-eeccCCceEEEEeccCcEEEEEecCCCCcceeeccCC-CEEEEecCce
Confidence 9998888999999999999999998877666 7789999999999999988875 4578889999884 5667777889
Q ss_pred EEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEE
Q 002519 782 VSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLL 860 (913)
Q Consensus 782 I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~ 860 (913)
|.+||..+...++.++ -...|.+...+|+..++++|++| .++.||+.++.+..+. .++|.++|.|+.|+|+|...+
T Consensus 207 V~Fwdaksf~~lKs~k-~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~--nkgh~gpVhcVrFSPdGE~yA 283 (334)
T KOG0278|consen 207 VKFWDAKSFGLLKSYK-MPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSY--NKGHFGPVHCVRFSPDGELYA 283 (334)
T ss_pred eEEeccccccceeecc-CccccccccccCCCceEEecCcceEEEEEeccCCceeeec--ccCCCCceEEEEECCCCceee
Confidence 9999999998888776 35678999999999999999999 9999999998554442 488999999999999999999
Q ss_pred EEEcCCeEEEEECCCCcEE
Q 002519 861 VIGCYQSLELWNMSENKTM 879 (913)
Q Consensus 861 s~s~dg~I~iwd~~~~~~~ 879 (913)
+|+.||+|+||-...++..
T Consensus 284 sGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 284 SGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred ccCCCceEEEEEecCCCch
Confidence 9999999999998776544
No 73
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=5.5e-26 Score=252.70 Aligned_cols=265 Identities=23% Similarity=0.449 Sum_probs=226.9
Q ss_pred EEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCceeEEecc-C
Q 002519 639 CHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMG-H 717 (913)
Q Consensus 639 l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~-h 717 (913)
+.|+ ....||+|. ...|++|+..++........+...|+++.|+++|.+|++|..+|.|.|||+.+ .+.++.+.+ |
T Consensus 183 ldWs-s~n~laVal-g~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~-~k~~~~~~~~h 259 (484)
T KOG0305|consen 183 LDWS-SANVLAVAL-GQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKE-QKKTRTLRGSH 259 (484)
T ss_pred hhcc-cCCeEEEEe-cceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhh-ccccccccCCc
Confidence 5676 344677764 55899999999987777766689999999999999999999999999999987 666777777 9
Q ss_pred CCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEE-eeC---CceEEEEecCCCEEEEEEcCCeEEEEECCCCeEE
Q 002519 718 SASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV-FKG---GTAQMRFQPHLGRYLAAAAENVVSILDAETQACR 793 (913)
Q Consensus 718 ~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~-~~~---~~~~v~~s~~~~~ll~~~~dg~I~i~D~~t~~~~ 793 (913)
...|-+++|. ..++.+|+.|+.|..+|++....... +.+ .+..+.|++++.++++++.|+.+.|||.....++
T Consensus 260 ~~rvg~laW~---~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~ 336 (484)
T KOG0305|consen 260 ASRVGSLAWN---SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPK 336 (484)
T ss_pred CceeEEEecc---CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCcccc
Confidence 9999999998 34777999999999999998765444 333 4566789999999999999999999999999999
Q ss_pred EEecCCCCCeEEEEEcCC-CCEEEEEe--CC-eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEEEEcC--Ce
Q 002519 794 LSLQGHTKPIDSVCWDPS-GELLASVS--ED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY--QS 867 (913)
Q Consensus 794 ~~l~~h~~~V~sl~~spd-g~~l~s~s--~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~d--g~ 867 (913)
..+..|...|..++|+|- ..+||+|+ .| .|++||+.++. .+..+.. ...|..+.|++..+.|+++... +.
T Consensus 337 ~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~---~i~~vdt-gsQVcsL~Wsk~~kEi~sthG~s~n~ 412 (484)
T KOG0305|consen 337 FTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGA---RIDSVDT-GSQVCSLIWSKKYKELLSTHGYSENQ 412 (484)
T ss_pred EEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCc---Eeccccc-CCceeeEEEcCCCCEEEEecCCCCCc
Confidence 999999999999999994 45888876 45 99999999874 4443332 7889999999999888887654 58
Q ss_pred EEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 002519 868 LELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 913 (913)
Q Consensus 868 I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~Lasgs~DG~I~IWd 913 (913)
|.||++.+.+.+ .+.+|...|..++++|||..|++|+.|.++++|+
T Consensus 413 i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~ 459 (484)
T KOG0305|consen 413 ITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWN 459 (484)
T ss_pred EEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEecc
Confidence 999999988776 8889999999999999999999999999999996
No 74
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2.1e-26 Score=232.63 Aligned_cols=287 Identities=17% Similarity=0.322 Sum_probs=242.7
Q ss_pred cceeeeEeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEE
Q 002519 622 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRV 701 (913)
Q Consensus 622 ~~~~~~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~I 701 (913)
.+..++.+.+|.+.|+.++....-..+.+++.|.+.+||.+++++++.++.+|.+.|++|+|++.+.++++++.|++..|
T Consensus 137 ~~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHI 216 (481)
T KOG0300|consen 137 KFRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHI 216 (481)
T ss_pred eEeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHH
Confidence 56778889999999999999887789999999999999999999999999999999999999999999999999999999
Q ss_pred EEc------CC-----------------------------C----CceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCc
Q 002519 702 WDA------DN-----------------------------P----GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGE 742 (913)
Q Consensus 702 wdl------~~-----------------------------~----~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~ 742 (913)
|.. .. . ..++..+.+|...|.+..|...+..++ +++.|.+
T Consensus 217 W~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~v-TaSWDRT 295 (481)
T KOG0300|consen 217 WKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMV-TASWDRT 295 (481)
T ss_pred HHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceee-eeecccc
Confidence 972 10 0 013556789999999999998877655 9999999
Q ss_pred EEEEEcCCCeeeEEeeCCc---eEEEEecCCCEEEEEEcCCeEEEEECCCC-eEEEEecCCCCCeEEEEEcCCCCEEEEE
Q 002519 743 IRYWSINNGSCTRVFKGGT---AQMRFQPHLGRYLAAAAENVVSILDAETQ-ACRLSLQGHTKPIDSVCWDPSGELLASV 818 (913)
Q Consensus 743 I~iwdl~~~~~~~~~~~~~---~~v~~s~~~~~ll~~~~dg~I~i~D~~t~-~~~~~l~~h~~~V~sl~~spdg~~l~s~ 818 (913)
..+||++++..+..+.++. +.++-+|....+++++.|.++++||.+.. ..+..|.+|.+.|+++.|.-+. .+++|
T Consensus 296 AnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd-~vVSg 374 (481)
T KOG0300|consen 296 ANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD-RVVSG 374 (481)
T ss_pred ceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCC-ceeec
Confidence 9999999999999988765 44566777778888888999999999965 5678899999999999998654 57789
Q ss_pred eCC-eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEE-----EcccCCCeEEEE
Q 002519 819 SED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMT-----LTAHEGLIAALA 892 (913)
Q Consensus 819 s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~-----~~~h~~~V~~l~ 892 (913)
++| +|+|||+++.. ..+..+.. ..+++.++++..++.|+.--.+..|++||+...++.. ..+|...|.|++
T Consensus 375 SDDrTvKvWdLrNMR--splATIRt-dS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~A 451 (481)
T KOG0300|consen 375 SDDRTVKVWDLRNMR--SPLATIRT-DSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCA 451 (481)
T ss_pred CCCceEEEeeecccc--Ccceeeec-CCccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeee
Confidence 999 99999998653 33333333 6788899999888888888888899999999887653 347999999999
Q ss_pred EeCCCC--EEEEEeCCCcEEEeC
Q 002519 893 VSTETG--YVASASHDKFVKLWK 913 (913)
Q Consensus 893 ~spdg~--~Lasgs~DG~I~IWd 913 (913)
|..+-. -|++|+.|..+.=|+
T Consensus 452 W~eehp~cnLftcGFDR~v~gW~ 474 (481)
T KOG0300|consen 452 WLEEHPACNLFTCGFDRMVAGWK 474 (481)
T ss_pred ccccCcccccccccccceeeeeE
Confidence 976543 478999999998885
No 75
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=8.8e-26 Score=228.09 Aligned_cols=271 Identities=16% Similarity=0.277 Sum_probs=222.4
Q ss_pred cCCCCEEEEEEec-CCCEEEEEeCCCcEEEEECCC-Ccee-eEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Q 002519 631 ASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTDT-LKSK-TNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP 707 (913)
Q Consensus 631 ~H~~~V~~l~fsp-dg~~Lasgs~Dg~V~vwd~~~-~~~~-~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~ 707 (913)
.-.+.|.+|+||| ...+|++|+.|++||+|++.. +..+ +....|.++|.+++|+.||..+++|+.|+.+++||+.+
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S- 103 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLAS- 103 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccC-
Confidence 4567899999999 556777999999999999985 3332 44567999999999999999999999999999999998
Q ss_pred CceeEEeccCCCCeEEEEEcCCCC-eEEEEEeCCCcEEEEEcCCCeeeEEeeCCceEEEEecCCCEEEEEEcCCeEEEEE
Q 002519 708 GYSLRTFMGHSASVMSLDFHPNKD-DLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILD 786 (913)
Q Consensus 708 ~~~~~~~~~h~~~V~sl~fsp~~~-~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~s~~~~~ll~~~~dg~I~i~D 786 (913)
+ -+..+..|.++|.++.|-+... .+|++|+.|.+|++||.+....+..+.-+..+.+.......++++..++.|.+|+
T Consensus 104 ~-Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vyn 182 (347)
T KOG0647|consen 104 G-QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYN 182 (347)
T ss_pred C-CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEE
Confidence 3 4667778999999999987543 4778999999999999999999988887777777777778899999999999999
Q ss_pred CCCCeEEEE-ecC-CCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEeecCC---------CceEEEEEeC
Q 002519 787 AETQACRLS-LQG-HTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNG---------NKFHSCVFHP 854 (913)
Q Consensus 787 ~~t~~~~~~-l~~-h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~---------~~i~~l~~sp 854 (913)
++.+...+. +.. -.-.++||+...|....+.|+-+ .+.|..+..+.. +.-..+++|. ..|++++|+|
T Consensus 183 L~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~-~~nFtFkCHR~~~~~~~~VYaVNsi~FhP 261 (347)
T KOG0647|consen 183 LENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNP-KDNFTFKCHRSTNSVNDDVYAVNSIAFHP 261 (347)
T ss_pred cCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCc-cCceeEEEeccCCCCCCceEEecceEeec
Confidence 987643222 111 22348899999888877888877 888888876533 4445555554 2478899999
Q ss_pred CCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEe
Q 002519 855 TYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASAS 904 (913)
Q Consensus 855 ~g~~l~s~s~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~Lasgs 904 (913)
....|++++.||++.+||-.....+ ....|..+|+|++|+.+|.++|.+.
T Consensus 262 ~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 262 VHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYAL 312 (347)
T ss_pred ccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEe
Confidence 9999999999999999999877665 6688999999999999999887653
No 76
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=4.3e-26 Score=225.11 Aligned_cols=248 Identities=21% Similarity=0.339 Sum_probs=205.8
Q ss_pred cceeeeEeecCCCCEEEEEEecCC-CEEEEEeCCCcEEEEECC-CCceeeEeccCCCCeEEEEECCCC-CEEEEEeCCCe
Q 002519 622 SFKEANSVRASTSKVICCHFSSDG-KLLATGGHDKKAVLWHTD-TLKSKTNLEEHSSLITDVRFSPSM-PRLATSSFDKT 698 (913)
Q Consensus 622 ~~~~~~~l~~H~~~V~~l~fspdg-~~Lasgs~Dg~V~vwd~~-~~~~~~~l~~h~~~V~~l~fspdg-~~Lasgs~Dg~ 698 (913)
.+.+...+. -.+.+.+++|+++. ..+++++.||+++|||+. ...++..++.|...|.++.|++.. ..++++|.|++
T Consensus 50 gi~e~~s~d-~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~T 128 (311)
T KOG0277|consen 50 GIQECQSYD-TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGT 128 (311)
T ss_pred CeEEEEeee-cccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCc
Confidence 444555554 35679999999954 688889999999999976 456888999999999999999854 46788899999
Q ss_pred EEEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeC---CceEEEEecCCCE-EE
Q 002519 699 VRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGR-YL 774 (913)
Q Consensus 699 V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~s~~~~~-ll 774 (913)
|++|+... ...+.+|.+|...|....|+|....++++++.|+++++||++.......++. .+.++.|+..+.. ++
T Consensus 129 iKLW~~~r-~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~ 207 (311)
T KOG0277|consen 129 IKLWDPNR-PNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLA 207 (311)
T ss_pred eEeecCCC-CcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEE
Confidence 99999987 6778999999999999999999999999999999999999987543333544 4456667766654 55
Q ss_pred EEEcCCeEEEEECCCC-eEEEEecCCCCCeEEEEEcCCCC-EEEEEeCC-eEEEEECCCCCCCceEEEeecCCCceEEEE
Q 002519 775 AAAAENVVSILDAETQ-ACRLSLQGHTKPIDSVCWDPSGE-LLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCV 851 (913)
Q Consensus 775 ~~~~dg~I~i~D~~t~-~~~~~l~~h~~~V~sl~~spdg~-~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~ 851 (913)
+++.|+.|++||+++- .++.++.+|.-.|+.|+|+|... +|++++.| +++|||..... .++.....|..-+..+.
T Consensus 208 Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~d--s~~e~~~~HtEFv~g~D 285 (311)
T KOG0277|consen 208 TGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQD--SAIETVDHHTEFVCGLD 285 (311)
T ss_pred ecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccch--hhhhhhhccceEEeccc
Confidence 5667999999999986 67889999999999999999655 99999999 99999997543 45666677788888888
Q ss_pred EeC-CCCEEEEEEcCCeEEEEEC
Q 002519 852 FHP-TYPSLLVIGCYQSLELWNM 873 (913)
Q Consensus 852 ~sp-~g~~l~s~s~dg~I~iwd~ 873 (913)
|++ +...++.++.|+.++||+-
T Consensus 286 ws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 286 WSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred cccccCceeeecccccceeeecc
Confidence 887 5668999999999999984
No 77
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.6e-25 Score=239.56 Aligned_cols=237 Identities=22% Similarity=0.286 Sum_probs=203.8
Q ss_pred CCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCC-EEEEEeCCCeEEEEEcCCCCcee
Q 002519 633 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP-RLATSSFDKTVRVWDADNPGYSL 711 (913)
Q Consensus 633 ~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~-~Lasgs~Dg~V~Iwdl~~~~~~~ 711 (913)
.+.|++++|-.||++||+|+..|.|+|||..+...++.+.+|..+|..+.|+|.+. .|++|++|+.+++||+.+ ....
T Consensus 68 k~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~-a~v~ 146 (487)
T KOG0310|consen 68 KDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLST-AYVQ 146 (487)
T ss_pred ccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCC-cEEE
Confidence 35699999999999999999999999999877778889999999999999999655 678888899999999998 5556
Q ss_pred EEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCC-eeeEEeeC--CceEEEEecCCCEEEEEEcCCeEEEEECC
Q 002519 712 RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG-SCTRVFKG--GTAQMRFQPHLGRYLAAAAENVVSILDAE 788 (913)
Q Consensus 712 ~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~-~~~~~~~~--~~~~v~~s~~~~~ll~~~~dg~I~i~D~~ 788 (913)
..+.+|++.|.|.+|+|-.+++++||+.||.|++||++.. ..+..+.. ++..+.+.|.+..+++ +..+.|++||+.
T Consensus 147 ~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~ias-AgGn~vkVWDl~ 225 (487)
T KOG0310|consen 147 AELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIAS-AGGNSVKVWDLT 225 (487)
T ss_pred EEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEE-cCCCeEEEEEec
Confidence 7889999999999999999999999999999999999987 55666653 5678888888666554 556789999999
Q ss_pred CC-eEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEEEEcCC
Q 002519 789 TQ-ACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ 866 (913)
Q Consensus 789 t~-~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg 866 (913)
+| +.+..+..|...|+|+++..++..|++++-| .|+|||+.+. +.++.+.- .++|.+|+.+|++..+++|..+|
T Consensus 226 ~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~---Kvv~s~~~-~~pvLsiavs~dd~t~viGmsnG 301 (487)
T KOG0310|consen 226 TGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNY---KVVHSWKY-PGPVLSIAVSPDDQTVVIGMSNG 301 (487)
T ss_pred CCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccce---EEEEeeec-ccceeeEEecCCCceEEEecccc
Confidence 66 5555566699999999999999999999999 9999997544 66666655 77899999999999999999999
Q ss_pred eEEEEECCC
Q 002519 867 SLELWNMSE 875 (913)
Q Consensus 867 ~I~iwd~~~ 875 (913)
.+.+-+...
T Consensus 302 lv~~rr~~~ 310 (487)
T KOG0310|consen 302 LVSIRRREV 310 (487)
T ss_pred eeeeehhhc
Confidence 887775433
No 78
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=4.1e-24 Score=207.00 Aligned_cols=287 Identities=21% Similarity=0.302 Sum_probs=234.9
Q ss_pred cceeeeEeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCC---------------ceeeEeccCCCCeEEEEECCC
Q 002519 622 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL---------------KSKTNLEEHSSLITDVRFSPS 686 (913)
Q Consensus 622 ~~~~~~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~---------------~~~~~l~~h~~~V~~l~fspd 686 (913)
.|..+..++ .+..|.+++|.|.|.+.|+|+..++++|.-.... ...+.-+.|.+.|.|++|+|+
T Consensus 22 ~f~~i~~l~-dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~ 100 (350)
T KOG0641|consen 22 HFEAINILE-DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPC 100 (350)
T ss_pred ceEEEEEec-chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCc
Confidence 455555554 5668999999999999999999999998743211 112234568999999999999
Q ss_pred CCEEEEEeCCCeEEEEEcCCCC----ceeEEeccCCCCeEEEEEcCC---CCeEEEEEe-CCCcEEEEEcCCCeeeEEee
Q 002519 687 MPRLATSSFDKTVRVWDADNPG----YSLRTFMGHSASVMSLDFHPN---KDDLICSCD-GDGEIRYWSINNGSCTRVFK 758 (913)
Q Consensus 687 g~~Lasgs~Dg~V~Iwdl~~~~----~~~~~~~~h~~~V~sl~fsp~---~~~ll~sgs-~Dg~I~iwdl~~~~~~~~~~ 758 (913)
|.+|++|+.|++|++..++... ..-..|.-|.+.|..++|..+ +..++++++ .|..|++-|..++.....+.
T Consensus 101 geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~s 180 (350)
T KOG0641|consen 101 GELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALS 180 (350)
T ss_pred cCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeec
Confidence 9999999999999998776522 123456779999999999654 445665554 57888899999998888887
Q ss_pred CCceEE-E-EecCCCEEEEEEcCCeEEEEECCCCeEEEEecC--C-----CCCeEEEEEcCCCCEEEEEeCC-eEEEEEC
Q 002519 759 GGTAQM-R-FQPHLGRYLAAAAENVVSILDAETQACRLSLQG--H-----TKPIDSVCWDPSGELLASVSED-SVRVWTV 828 (913)
Q Consensus 759 ~~~~~v-~-~s~~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~--h-----~~~V~sl~~spdg~~l~s~s~d-~I~vwdl 828 (913)
++...+ + ++.++-.+++++.|.+|++||++-..++.++.. | ...|.+++..|.|++|++|..| ...+||+
T Consensus 181 ghtghilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydi 260 (350)
T KOG0641|consen 181 GHTGHILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDI 260 (350)
T ss_pred CCcccEEEEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEe
Confidence 766443 2 455556677778899999999999988887753 2 3569999999999999999999 9999999
Q ss_pred CCCCCCceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCC-----cEEEEcccCCCeEEEEEeCCCCEEEEE
Q 002519 829 GSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSEN-----KTMTLTAHEGLIAALAVSTETGYVASA 903 (913)
Q Consensus 829 ~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~-----~~~~~~~h~~~V~~l~~spdg~~Lasg 903 (913)
+.+ ..+..+..|...|.++.|+|...++++++.|..|++-|+... ..+.+..|...+..+.|+|..--+++.
T Consensus 261 rg~---r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfiss 337 (350)
T KOG0641|consen 261 RGG---RMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISS 337 (350)
T ss_pred eCC---ceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeec
Confidence 887 788889999999999999999999999999999999998654 234667899999999999999889999
Q ss_pred eCCCcEEEe
Q 002519 904 SHDKFVKLW 912 (913)
Q Consensus 904 s~DG~I~IW 912 (913)
+.|.++.+|
T Consensus 338 sadkt~tlw 346 (350)
T KOG0641|consen 338 SADKTATLW 346 (350)
T ss_pred cCcceEEEe
Confidence 999999999
No 79
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=4.7e-25 Score=224.03 Aligned_cols=264 Identities=18% Similarity=0.306 Sum_probs=219.5
Q ss_pred CccceeeeEeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCC--EEEEEeCCC
Q 002519 620 GFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP--RLATSSFDK 697 (913)
Q Consensus 620 ~~~~~~~~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~--~Lasgs~Dg 697 (913)
.+++.....+..|.+.|+|++.+ +.++|+|+.|-+|+|||+.+...+..+-.|.+.|+++.|.++-. .|++|+.||
T Consensus 30 ~~~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG 107 (362)
T KOG0294|consen 30 KPTLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDG 107 (362)
T ss_pred ceeeeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCC
Confidence 34677888899999999999985 88999999999999999999999999999999999999998876 899999999
Q ss_pred eEEEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEe--eCCceEEEEecCCCEEEE
Q 002519 698 TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF--KGGTAQMRFQPHLGRYLA 775 (913)
Q Consensus 698 ~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~--~~~~~~v~~s~~~~~ll~ 775 (913)
.|.+|++.. -.++.++++|.+.|+.|+.+|.++ |.++.+.|+.+++||+-+++.-... +.....+.|++.|.+|++
T Consensus 108 ~i~iw~~~~-W~~~~slK~H~~~Vt~lsiHPS~K-LALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v 185 (362)
T KOG0294|consen 108 HIIIWRVGS-WELLKSLKAHKGQVTDLSIHPSGK-LALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVV 185 (362)
T ss_pred cEEEEEcCC-eEEeeeecccccccceeEecCCCc-eEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEE
Confidence 999999987 688999999999999999999977 5668889999999999998765544 445566999999888877
Q ss_pred EEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEeecCCCceEEEEE--
Q 002519 776 AAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVF-- 852 (913)
Q Consensus 776 ~~~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~-- 852 (913)
+.. +.|-||.+++-.....+.. ...+.|+.|. ++.+|++|.++ .|++||..+. .+..++..|...|-.+.+
T Consensus 186 ~~~-~~i~i~q~d~A~v~~~i~~-~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~---~~~~~~~AH~~RVK~i~~~~ 259 (362)
T KOG0294|consen 186 SGR-NKIDIYQLDNASVFREIEN-PKRILCATFL-DGSELLVGGDNEWISLKDTDSD---TPLTEFLAHENRVKDIASYT 259 (362)
T ss_pred Eec-cEEEEEecccHhHhhhhhc-cccceeeeec-CCceEEEecCCceEEEeccCCC---ccceeeecchhheeeeEEEe
Confidence 665 5678888887665555542 3557777776 45567777777 9999999764 888999999999999874
Q ss_pred eCCCCEEEEEEcCCeEEEEECCCC-----cEEEEcccCCCeEEEEE
Q 002519 853 HPTYPSLLVIGCYQSLELWNMSEN-----KTMTLTAHEGLIAALAV 893 (913)
Q Consensus 853 sp~g~~l~s~s~dg~I~iwd~~~~-----~~~~~~~h~~~V~~l~~ 893 (913)
.|++.+|++++.||.|+|||++.. +.+........++|+..
T Consensus 260 ~~~~~~lvTaSSDG~I~vWd~~~~~k~~~~~l~e~n~~~RltCl~~ 305 (362)
T KOG0294|consen 260 NPEHEYLVTASSDGFIKVWDIDMETKKRPTLLAELNTNVRLTCLRV 305 (362)
T ss_pred cCCceEEEEeccCceEEEEEccccccCCcceeEEeecCCccceeee
Confidence 567889999999999999999876 33333444666777655
No 80
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=3.2e-26 Score=251.32 Aligned_cols=268 Identities=22% Similarity=0.383 Sum_probs=231.2
Q ss_pred cCCCEEEEEeCCCcEEEEECCCCc------eeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCC-ceeEEec
Q 002519 643 SDGKLLATGGHDKKAVLWHTDTLK------SKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG-YSLRTFM 715 (913)
Q Consensus 643 pdg~~Lasgs~Dg~V~vwd~~~~~------~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~-~~~~~~~ 715 (913)
|.+++|++||.||.|++|++.... ....++.|.+.|.++....+++.|+++|.|-+|++|+..... .+..++.
T Consensus 35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir 114 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIR 114 (735)
T ss_pred CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhh
Confidence 467789999999999999987322 366788999999999999999999999999999999998754 7788899
Q ss_pred cCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCe--eeEEe------------eCCceEEEEecCCCEEEEEEcCCe
Q 002519 716 GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS--CTRVF------------KGGTAQMRFQPHLGRYLAAAAENV 781 (913)
Q Consensus 716 ~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~--~~~~~------------~~~~~~v~~s~~~~~ll~~~~dg~ 781 (913)
.|.+.|.|+++......++++|+-|+.|++||++++. .+..+ +..+.+++..+.+..++.|+.++.
T Consensus 115 ~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~ 194 (735)
T KOG0308|consen 115 THKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKD 194 (735)
T ss_pred cccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccc
Confidence 9999999999955557799999999999999999873 23222 224556777788778888888999
Q ss_pred EEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEE
Q 002519 782 VSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLL 860 (913)
Q Consensus 782 I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~ 860 (913)
|++||.++.+.+..+.+|+..|..+..++||..+++++.| +|++||+... +|+.++..|...|+++..+|+-.+++
T Consensus 195 lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQ---rCl~T~~vH~e~VWaL~~~~sf~~vY 271 (735)
T KOG0308|consen 195 LRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQ---RCLATYIVHKEGVWALQSSPSFTHVY 271 (735)
T ss_pred eEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeecccc---ceeeeEEeccCceEEEeeCCCcceEE
Confidence 9999999999999999999999999999999999999999 9999999654 89999999999999999999999999
Q ss_pred EEEcCCeEEEEECCC-CcEEEEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 002519 861 VIGCYQSLELWNMSE-NKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 913 (913)
Q Consensus 861 s~s~dg~I~iwd~~~-~~~~~~~~h~~~V~~l~~spdg~~Lasgs~DG~I~IWd 913 (913)
+|+.|+.|..-|+++ .++..+...+.+|..+..+....-+-+++.|+.|+-|.
T Consensus 272 sG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~ 325 (735)
T KOG0308|consen 272 SGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWK 325 (735)
T ss_pred ecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecC
Confidence 999999999999998 44556667777888888876555556777899998884
No 81
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.4e-25 Score=254.98 Aligned_cols=279 Identities=18% Similarity=0.266 Sum_probs=210.5
Q ss_pred CCCCCcceEEEEcCCCccccCC---CCeEEeCCCcchhhhccccc---------ccC------CccCceeeecccCCCCC
Q 002519 546 SGTTSKPLMMFGTDGAGTLTSP---SNQLWDDKDLELRADMDRLV---------EDG------SLDDNVESFLSHDDTDP 607 (913)
Q Consensus 546 ~~~~~~~~~~~s~dg~~~~~~~---~~~vWd~~~g~~~~~~~~~~---------~~g------~~d~~v~~~~~~d~~~~ 607 (913)
........+.||+||+|+++++ .++||.+...+. ..++... +.+ ............-....
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~-~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~ 343 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESER-MRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGS 343 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccch-hcccccccchhhhhhhhccccCcccccccccccccccccccc
Confidence 3445688999999999999955 559999987544 1111100 000 00001111111111111
Q ss_pred CCCCCcccccccCccceeeeEeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECC-C
Q 002519 608 RDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSP-S 686 (913)
Q Consensus 608 ~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fsp-d 686 (913)
.......-.....|.-+++..++||.+.|.+|.||.++ +|++++.|++|+||++...+++..|. |.+.|+||+|+| |
T Consensus 344 ~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvD 421 (712)
T KOG0283|consen 344 QSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVD 421 (712)
T ss_pred CCccccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccC
Confidence 11223334444567778999999999999999999876 99999999999999999999999885 999999999999 6
Q ss_pred CCEEEEEeCCCeEEEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEee--------
Q 002519 687 MPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK-------- 758 (913)
Q Consensus 687 g~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~-------- 758 (913)
.+||++||.||.||||++.. ..+..+.....-|++++|.|+|...| .|+.+|.+++|+....+....+.
T Consensus 422 DryFiSGSLD~KvRiWsI~d--~~Vv~W~Dl~~lITAvcy~PdGk~av-IGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk 498 (712)
T KOG0283|consen 422 DRYFISGSLDGKVRLWSISD--KKVVDWNDLRDLITAVCYSPDGKGAV-IGTFNGYCRFYDTEGLKLVSDFHIRLHNKKK 498 (712)
T ss_pred CCcEeecccccceEEeecCc--CeeEeehhhhhhheeEEeccCCceEE-EEEeccEEEEEEccCCeEEEeeeEeeccCcc
Confidence 78999999999999999985 34555555668899999999987555 99999999999999877654432
Q ss_pred --C-CceEEEEecCC-CEEEEEEcCCeEEEEECCCCeEEEEecCCCC--CeEEEEEcCCCCEEEEEeCC-eEEEEECCC
Q 002519 759 --G-GTAQMRFQPHL-GRYLAAAAENVVSILDAETQACRLSLQGHTK--PIDSVCWDPSGELLASVSED-SVRVWTVGS 830 (913)
Q Consensus 759 --~-~~~~v~~s~~~-~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~--~V~sl~~spdg~~l~s~s~d-~I~vwdl~~ 830 (913)
+ .++.+.|.|.. ..+++++.|..|+|||.++..++..|+++.. .-....|+.||++|+++++| .|+||++..
T Consensus 499 ~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 499 KQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDS 577 (712)
T ss_pred ccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCC
Confidence 1 36667777655 4699999999999999999999999987543 34577899999999999999 999999843
No 82
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.94 E-value=2.8e-25 Score=230.56 Aligned_cols=259 Identities=20% Similarity=0.337 Sum_probs=218.0
Q ss_pred CCCCCCcccccccCccceeeeEeecCCCCEEEEEEecCC---CEEEEEeCCCcEEEEECCCCce----eeEeccCCCCeE
Q 002519 607 PRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDG---KLLATGGHDKKAVLWHTDTLKS----KTNLEEHSSLIT 679 (913)
Q Consensus 607 ~~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg---~~Lasgs~Dg~V~vwd~~~~~~----~~~l~~h~~~V~ 679 (913)
.-|+..|+|+.. -+....+.+|.++|.+++|-... ..|++++.|.++++|.++.++. +....||...|-
T Consensus 122 sYDg~~riWd~~----Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~ 197 (423)
T KOG0313|consen 122 SYDGTSRIWDLK----GKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVD 197 (423)
T ss_pred ecCCeeEEEecC----CceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhccccccee
Confidence 445566666653 46888999999999988885433 4699999999999999886543 334459999999
Q ss_pred EEEECCCCCEEEEEeCCCeEEEEEcCCC------------------------CceeEEeccCCCCeEEEEEcCCCCeEEE
Q 002519 680 DVRFSPSMPRLATSSFDKTVRVWDADNP------------------------GYSLRTFMGHSASVMSLDFHPNKDDLIC 735 (913)
Q Consensus 680 ~l~fspdg~~Lasgs~Dg~V~Iwdl~~~------------------------~~~~~~~~~h~~~V~sl~fsp~~~~ll~ 735 (913)
+|+..+++.++++||.|.+|.||+..+. +.++.++.+|..+|.++.|++ ...++
T Consensus 198 sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d--~~v~y 275 (423)
T KOG0313|consen 198 SVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD--ATVIY 275 (423)
T ss_pred EEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC--CCceE
Confidence 9999999999999999999999994320 124567789999999999998 34677
Q ss_pred EEeCCCcEEEEEcCCCeeeEEeeC--CceEEEEecCCCEEEEEEcCCeEEEEECCCC---eEEEEecCCCCCeEEEEEcC
Q 002519 736 SCDGDGEIRYWSINNGSCTRVFKG--GTAQMRFQPHLGRYLAAAAENVVSILDAETQ---ACRLSLQGHTKPIDSVCWDP 810 (913)
Q Consensus 736 sgs~Dg~I~iwdl~~~~~~~~~~~--~~~~v~~s~~~~~ll~~~~dg~I~i~D~~t~---~~~~~l~~h~~~V~sl~~sp 810 (913)
+++.|.+|+.||++++.++..+.+ ...++.+++....+++++.|..|++||.+++ -....|.+|.+.|.++.|+|
T Consensus 276 S~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp 355 (423)
T KOG0313|consen 276 SVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSP 355 (423)
T ss_pred eecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCC
Confidence 999999999999999998887765 4578889999899999999999999999986 45678899999999999999
Q ss_pred CCC-EEEEEeCC-eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 002519 811 SGE-LLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMS 874 (913)
Q Consensus 811 dg~-~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~ 874 (913)
... .|++++.| ++++||+|+.. ..+..+..|...|.++.|. ++..|++|+.|++|+|+.-.
T Consensus 356 ~~~~~~~S~S~D~t~klWDvRS~k--~plydI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 356 TNEFQLVSGSYDNTVKLWDVRSTK--APLYDIAGHNDKVLSVDWN-EGGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred CCceEEEEEecCCeEEEEEeccCC--CcceeeccCCceEEEEecc-CCceEEeccCcceEEEeccc
Confidence 766 78899999 99999999762 4788899999999999997 45579999999999998653
No 83
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.94 E-value=1.5e-25 Score=222.11 Aligned_cols=239 Identities=23% Similarity=0.399 Sum_probs=208.7
Q ss_pred eEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCc-eeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEE
Q 002519 669 TNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGY-SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWS 747 (913)
Q Consensus 669 ~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~-~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwd 747 (913)
+.+.+|...|.+|+|+.+|.+|++|+.|++++||+++.... .-....+|.+.|-.++|+|....+|++++.|.+|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 55678999999999999999999999999999999986321 12345689999999999999899999999999999999
Q ss_pred cCCCeeeEEee--CCceEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCE-EEEEeCCeEE
Q 002519 748 INNGSCTRVFK--GGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGEL-LASVSEDSVR 824 (913)
Q Consensus 748 l~~~~~~~~~~--~~~~~v~~s~~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~-l~s~s~d~I~ 824 (913)
++.++++.... ++...+.|+|++++++++..|..|.++|.++.+.+...+ ....+..++|+.++.+ +++.+.++|.
T Consensus 94 ~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~~w~~~nd~Fflt~GlG~v~ 172 (313)
T KOG1407|consen 94 IRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEISWNNSNDLFFLTNGLGCVE 172 (313)
T ss_pred eccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhc-ccceeeeeeecCCCCEEEEecCCceEE
Confidence 99999988765 456678999999999999999999999999988777655 4456788899987774 4455556898
Q ss_pred EEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEE
Q 002519 825 VWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASA 903 (913)
Q Consensus 825 vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~Lasg 903 (913)
|.... ..+.+..+..|.....|+.|+|+|++|++|+.|-.+.+||+.+.-++ .+..++-+|+.|.|+.||++||+|
T Consensus 173 ILsyp---sLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASa 249 (313)
T KOG1407|consen 173 ILSYP---SLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASA 249 (313)
T ss_pred EEecc---ccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeecc
Confidence 88885 44888999999999999999999999999999999999999998877 778899999999999999999999
Q ss_pred eCCCcEEE
Q 002519 904 SHDKFVKL 911 (913)
Q Consensus 904 s~DG~I~I 911 (913)
++|..|-|
T Consensus 250 SEDh~IDI 257 (313)
T KOG1407|consen 250 SEDHFIDI 257 (313)
T ss_pred CccceEEe
Confidence 99988865
No 84
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.94 E-value=4.7e-25 Score=254.49 Aligned_cols=248 Identities=25% Similarity=0.440 Sum_probs=216.3
Q ss_pred cCccceeeeE-eecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCC
Q 002519 619 QGFSFKEANS-VRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDK 697 (913)
Q Consensus 619 ~~~~~~~~~~-l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg 697 (913)
+....+.+.. +.+|.+.|++++|..-+.+|++|+.|.+++|||+.++.+..++.+|...|.++...+ .++++|+.|.
T Consensus 234 ~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~--~~~~sgs~D~ 311 (537)
T KOG0274|consen 234 DLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTIDP--FLLVSGSRDN 311 (537)
T ss_pred ecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEccC--ceEeeccCCc
Confidence 3334455666 999999999999988788999999999999999999999999999999999998754 4888899999
Q ss_pred eEEEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeCCceEEE-EecCC-CEEEE
Q 002519 698 TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMR-FQPHL-GRYLA 775 (913)
Q Consensus 698 ~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~-~s~~~-~~ll~ 775 (913)
+|+||++.+ +.++..+.+|.+.|.++.++ ..++++|+.|++|++||+.++++++.+.++...+. +..+. ..++.
T Consensus 312 tVkVW~v~n-~~~l~l~~~h~~~V~~v~~~---~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~~~~~S 387 (537)
T KOG0274|consen 312 TVKVWDVTN-GACLNLLRGHTGPVNCVQLD---EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSENRLLS 387 (537)
T ss_pred eEEEEeccC-cceEEEeccccccEEEEEec---CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCcceEEe
Confidence 999999997 88899999999999999998 33777999999999999999999999998765433 24444 88999
Q ss_pred EEcCCeEEEEECCCC-eEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEeec-CCCceEEEEE
Q 002519 776 AAAENVVSILDAETQ-ACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSC-NGNKFHSCVF 852 (913)
Q Consensus 776 ~~~dg~I~i~D~~t~-~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~-~~~~i~~l~~ 852 (913)
++.|+.|++||+++. +++.++.+|..-|.++.+ .+++|++++.| +|++||..++ .+++.+.+ +...|..+++
T Consensus 388 gs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~---~~~~~~~~~~~~~v~~l~~ 462 (537)
T KOG0274|consen 388 GSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEG---ECLRTLEGRHVGGVSALAL 462 (537)
T ss_pred eeeccceEeecCCchhhhhhhhcCCccccccccc--ccceeEeccccccEEEeecccC---ceeeeeccCCcccEEEeec
Confidence 999999999999999 999999999999876655 57899999999 9999999876 77777777 5677877777
Q ss_pred eCCCCEEEEEEcCCeEEEEECCCCcEE
Q 002519 853 HPTYPSLLVIGCYQSLELWNMSENKTM 879 (913)
Q Consensus 853 sp~g~~l~s~s~dg~I~iwd~~~~~~~ 879 (913)
. ...+++++.++.+++||+++++..
T Consensus 463 ~--~~~il~s~~~~~~~l~dl~~~~~~ 487 (537)
T KOG0274|consen 463 G--KEEILCSSDDGSVKLWDLRSGTLI 487 (537)
T ss_pred C--cceEEEEecCCeeEEEecccCchh
Confidence 6 567999999999999999999877
No 85
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.94 E-value=3.6e-25 Score=243.81 Aligned_cols=347 Identities=14% Similarity=0.204 Sum_probs=263.9
Q ss_pred CCCCeEEeCCCcchhhhcccccccCCcc-------------------CceeeecccCC----CCCCCCCCcccccccCcc
Q 002519 566 SPSNQLWDDKDLELRADMDRLVEDGSLD-------------------DNVESFLSHDD----TDPRDAGGRGMDVSQGFS 622 (913)
Q Consensus 566 ~~~~~vWd~~~g~~~~~~~~~~~~g~~d-------------------~~v~~~~~~d~----~~~~d~~~~~~~~~~~~~ 622 (913)
.+.++||+.++.+....+.+--+.|... +.|...+.+-. ....|-...+||+.+...
T Consensus 279 ~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~klscVYndhSlYvWDvrD~~k 358 (1080)
T KOG1408|consen 279 KGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNK 358 (1080)
T ss_pred cceeeecCcchhhhccccccccccccchhhcccccccccccCcccCCceeEEEecCCCceEEEEEcCceEEEEecccccc
Confidence 5677999999988777766533333221 11221111110 012344556888888777
Q ss_pred ceeeeEeecCCCCEEEEEEecCC-----------CEEEEEeCCCcEEEEECCCCceeeE---------------------
Q 002519 623 FKEANSVRASTSKVICCHFSSDG-----------KLLATGGHDKKAVLWHTDTLKSKTN--------------------- 670 (913)
Q Consensus 623 ~~~~~~l~~H~~~V~~l~fspdg-----------~~Lasgs~Dg~V~vwd~~~~~~~~~--------------------- 670 (913)
......+--|...|+.|.--|.. ..++|++.|++|+|||++.+..-.+
T Consensus 359 vgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q 438 (1080)
T KOG1408|consen 359 VGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQ 438 (1080)
T ss_pred ccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchh
Confidence 77778888899999998876521 2588999999999999874211100
Q ss_pred ----------------eccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCceeEEeccCCCCeEEEEEcCC--CCe
Q 002519 671 ----------------LEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPN--KDD 732 (913)
Q Consensus 671 ----------------l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~--~~~ 732 (913)
.......|.+|+.+|++.+||+|..-|++||||+.+ ......+..|...|.|+.|+.- +..
T Consensus 439 ~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~-l~~~~~~eAHesEilcLeyS~p~~~~k 517 (1080)
T KOG1408|consen 439 IMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQE-LEYTCFMEAHESEILCLEYSFPVLTNK 517 (1080)
T ss_pred hhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehh-hhhhhheecccceeEEEeecCchhhhH
Confidence 001344699999999999999999999999999987 5566777899999999999752 456
Q ss_pred EEEEEeCCCcEEEEEcCCC-eeeEEeeC---CceEEEEecCC--CEEEEEEcCCeEEEEECCCCeEEEEecCC-----CC
Q 002519 733 LICSCDGDGEIRYWSINNG-SCTRVFKG---GTAQMRFQPHL--GRYLAAAAENVVSILDAETQACRLSLQGH-----TK 801 (913)
Q Consensus 733 ll~sgs~Dg~I~iwdl~~~-~~~~~~~~---~~~~v~~s~~~--~~ll~~~~dg~I~i~D~~t~~~~~~l~~h-----~~ 801 (913)
||++++.|..|.|||+... ..+.++.+ .++.+.|...+ ..+++++.|..|.+--.........+..| ..
T Consensus 518 LLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~kt 597 (1080)
T KOG1408|consen 518 LLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKT 597 (1080)
T ss_pred hhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccc
Confidence 8999999999999999754 34445544 46778888877 67888888887765433322111222222 34
Q ss_pred CeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-
Q 002519 802 PIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM- 879 (913)
Q Consensus 802 ~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~- 879 (913)
.++.++..|..+++++++.| .|+|||+.+++..+.++.-..|++....+...|.|.||++.+.|.++.|||+.+++++
T Consensus 598 TlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA 677 (1080)
T KOG1408|consen 598 TLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVA 677 (1080)
T ss_pred eEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhh
Confidence 68899999999999999999 9999999998655555555567788889999999999999999999999999999999
Q ss_pred EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 002519 880 TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 913 (913)
Q Consensus 880 ~~~~h~~~V~~l~~spdg~~Lasgs~DG~I~IWd 913 (913)
...+|...|+.+.|.+|.++|++.+.||+|.||+
T Consensus 678 ~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~ 711 (1080)
T KOG1408|consen 678 QMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWK 711 (1080)
T ss_pred hhcCcchheeeeeecccchhheeecCCceEEEEE
Confidence 8899999999999999999999999999999996
No 86
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.94 E-value=4.5e-25 Score=256.45 Aligned_cols=250 Identities=23% Similarity=0.394 Sum_probs=214.7
Q ss_pred eeeeEeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCC------------------CceeeEeccCCCCeEEEEECC
Q 002519 624 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT------------------LKSKTNLEEHSSLITDVRFSP 685 (913)
Q Consensus 624 ~~~~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~------------------~~~~~~l~~h~~~V~~l~fsp 685 (913)
+.+.....|.+.|+|+.|++||.+||+|++|+.|.||+... .+.+..+.+|...|.+++|+|
T Consensus 60 k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp 139 (942)
T KOG0973|consen 60 KHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP 139 (942)
T ss_pred hhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC
Confidence 46677889999999999999999999999999999998762 346788999999999999999
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeC------
Q 002519 686 SMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG------ 759 (913)
Q Consensus 686 dg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~------ 759 (913)
++.+||+++.|++|.||+..+. ..++++.+|...|..+.|.|-|+ +|++-++|++|+||++.+..+.+.+..
T Consensus 140 ~~~~lvS~s~DnsViiwn~~tF-~~~~vl~~H~s~VKGvs~DP~Gk-y~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~ 217 (942)
T KOG0973|consen 140 DDSLLVSVSLDNSVIIWNAKTF-ELLKVLRGHQSLVKGVSWDPIGK-YFASQSDDRTLKVWRTSDWGIEKSITKPFEESP 217 (942)
T ss_pred CccEEEEecccceEEEEccccc-eeeeeeecccccccceEECCccC-eeeeecCCceEEEEEcccceeeEeeccchhhCC
Confidence 9999999999999999999994 88999999999999999999987 567999999999999887666665543
Q ss_pred ---CceEEEEecCCCEEEEEEc----CCeEEEEECCCCeEEEEecCCCCCeEEEEEcCC-------------CC----EE
Q 002519 760 ---GTAQMRFQPHLGRYLAAAA----ENVVSILDAETQACRLSLQGHTKPIDSVCWDPS-------------GE----LL 815 (913)
Q Consensus 760 ---~~~~v~~s~~~~~ll~~~~----dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spd-------------g~----~l 815 (913)
....+.|+|+|.+|++... ..++.|.+..+.+.-..|-+|..++.+++|+|. .+ .+
T Consensus 218 ~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~ 297 (942)
T KOG0973|consen 218 LTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIA 297 (942)
T ss_pred CcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEE
Confidence 2345789999999988655 348999999999999999999999999999981 11 67
Q ss_pred EEEeCC-eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCc
Q 002519 816 ASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK 877 (913)
Q Consensus 816 ~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~ 877 (913)
|+|+.| +|.||........-.++.+ ....|..++|+|||-.|++++.||+|.++.+.+.+
T Consensus 298 AvgSqDrSlSVW~T~~~RPl~vi~~l--f~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~E 358 (942)
T KOG0973|consen 298 AVGSQDRSLSVWNTALPRPLFVIHNL--FNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKE 358 (942)
T ss_pred EEecCCccEEEEecCCCCchhhhhhh--hcCceeeeeEcCCCCeEEEEecCCeEEEEEcchHH
Confidence 888999 9999998665443334433 36679999999999999999999999999997654
No 87
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=2.4e-24 Score=218.48 Aligned_cols=283 Identities=20% Similarity=0.293 Sum_probs=213.1
Q ss_pred eeEeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCcee--eEec--cCCCCeEEEEECCCCCEEEEEe-CCCeEE
Q 002519 626 ANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSK--TNLE--EHSSLITDVRFSPSMPRLATSS-FDKTVR 700 (913)
Q Consensus 626 ~~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~--~~l~--~h~~~V~~l~fspdg~~Lasgs-~Dg~V~ 700 (913)
+..+++|.+.|+|++|+.||++||+++.|++|+||+++..... +.++ ..-+.-+.++|.||.+-++... ...+++
T Consensus 79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~ 158 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLC 158 (420)
T ss_pred hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEE
Confidence 4568999999999999999999999999999999999864321 1111 1223568899999988665554 456799
Q ss_pred EEEcCCC--C-cee--------EEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeCC---ceEEEE
Q 002519 701 VWDADNP--G-YSL--------RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG---TAQMRF 766 (913)
Q Consensus 701 Iwdl~~~--~-~~~--------~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~---~~~v~~ 766 (913)
+|.+... + ... ..-+.|...|..+-.... ..+|++++.|..|.+|+++ |..+..+... ....++
T Consensus 159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~-~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aav 236 (420)
T KOG2096|consen 159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGN-AKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAV 236 (420)
T ss_pred EEEeeecccCCCCcccccccccccchhcccceEEEeecCC-ceEEEEecCCCcEEEEecC-Cceeeeeccccccccceee
Confidence 9987531 1 111 122245566666666544 4577799999999999999 7777666543 345789
Q ss_pred ecCCCEEEEEEcCCeEEEEECC---CC-----eEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCC----CC
Q 002519 767 QPHLGRYLAAAAENVVSILDAE---TQ-----ACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSG----SE 833 (913)
Q Consensus 767 s~~~~~ll~~~~dg~I~i~D~~---t~-----~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~----~~ 833 (913)
+|+|..+++++..-.|++|.+- .| ..++.+++|...|..++|+++.+.+++.+.| +++|||+.-. ..
T Consensus 237 SP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qD 316 (420)
T KOG2096|consen 237 SPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQD 316 (420)
T ss_pred CCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCC
Confidence 9999999999999999999753 22 3567889999999999999999999999999 9999998532 22
Q ss_pred CceEEEe----ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE--EEcccCCCeEEEEEeCCCCEEEEEeCCC
Q 002519 834 GECVHEL----SCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM--TLTAHEGLIAALAVSTETGYVASASHDK 907 (913)
Q Consensus 834 ~~~i~~~----~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~--~~~~h~~~V~~l~~spdg~~Lasgs~DG 907 (913)
.+.+++. ...+..-..+..+|+|..|++ +....|++|..++++.. ....|+..|.+|+|+++|+++++|+ |.
T Consensus 317 pk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~-s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr 394 (420)
T KOG2096|consen 317 PKILKEGSAPLHAAGSEPVRLELSPSGDSLAV-SFGSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG-DR 394 (420)
T ss_pred chHhhcCCcchhhcCCCceEEEeCCCCcEEEe-ecCCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeec-ce
Confidence 3333332 222344458899999986655 44568999999988877 3457999999999999999999998 55
Q ss_pred cEEEe
Q 002519 908 FVKLW 912 (913)
Q Consensus 908 ~I~IW 912 (913)
.++|+
T Consensus 395 ~vrv~ 399 (420)
T KOG2096|consen 395 YVRVI 399 (420)
T ss_pred eeeee
Confidence 67764
No 88
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.93 E-value=2.2e-25 Score=233.48 Aligned_cols=254 Identities=22% Similarity=0.392 Sum_probs=217.0
Q ss_pred CCCCcccccccCccceeeeEeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCC
Q 002519 609 DAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP 688 (913)
Q Consensus 609 d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~ 688 (913)
|..++.|++..+ ....+.++.+..+.|+++.|.++++.+++++.|+.+++|+++..+...+|.+|.+.|+++.|.-...
T Consensus 196 Dr~Ik~W~v~~~-k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~ 274 (459)
T KOG0288|consen 196 DRIIKLWNVLGE-KSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHS 274 (459)
T ss_pred hhhhhhhhcccc-hhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhcccc
Confidence 344455555444 3568888999999999999999999999999999999999999999999999999999999998877
Q ss_pred EEEEEeCCCeEEEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEee--CCceEEEE
Q 002519 689 RLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK--GGTAQMRF 766 (913)
Q Consensus 689 ~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~--~~~~~v~~ 766 (913)
.+++|+.|.+|++||+.. ..+.+++. ....+.+|+.. ...+++|-.|++|++||+++..+....+ +.++++..
T Consensus 275 ~vVsgs~DRtiK~WDl~k-~~C~kt~l-~~S~cnDI~~~---~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~l 349 (459)
T KOG0288|consen 275 RVVSGSADRTIKLWDLQK-AYCSKTVL-PGSQCNDIVCS---ISDVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDL 349 (459)
T ss_pred ceeeccccchhhhhhhhh-hheecccc-ccccccceEec---ceeeeecccccceEEEeccCCceeeEeecCcceeeEee
Confidence 899999999999999997 66766655 34556667765 3356799999999999999999888776 45788999
Q ss_pred ecCCCEEEEEEcCCeEEEEECCCCeEEEEecCC----CCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEee
Q 002519 767 QPHLGRYLAAAAENVVSILDAETQACRLSLQGH----TKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELS 841 (913)
Q Consensus 767 s~~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h----~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~ 841 (913)
+.++..+++++.|.++.++|+++...+..+... ...++.++|+|++.|+++|+.| .|+||++.++ ++...+.
T Consensus 350 s~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tg---KlE~~l~ 426 (459)
T KOG0288|consen 350 SMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTG---KLEKVLS 426 (459)
T ss_pred ccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCc---eEEEEec
Confidence 999999999999999999999999888877642 2348889999999999999999 9999999887 5555555
Q ss_pred cCCC--ceEEEEEeCCCCEEEEEEcCCeEEEE
Q 002519 842 CNGN--KFHSCVFHPTYPSLLVIGCYQSLELW 871 (913)
Q Consensus 842 ~~~~--~i~~l~~sp~g~~l~s~s~dg~I~iw 871 (913)
.... .|++++|+|.|..+++++.++.+.+|
T Consensus 427 ~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 427 LSTSNAAITSLSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred cCCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence 4443 59999999999999999999999999
No 89
>PTZ00421 coronin; Provisional
Probab=99.93 E-value=8.5e-24 Score=243.88 Aligned_cols=223 Identities=17% Similarity=0.266 Sum_probs=181.0
Q ss_pred EeecCCCCEEEEEEec-CCCEEEEEeCCCcEEEEECCCC-------ceeeEeccCCCCeEEEEECCCC-CEEEEEeCCCe
Q 002519 628 SVRASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTDTL-------KSKTNLEEHSSLITDVRFSPSM-PRLATSSFDKT 698 (913)
Q Consensus 628 ~l~~H~~~V~~l~fsp-dg~~Lasgs~Dg~V~vwd~~~~-------~~~~~l~~h~~~V~~l~fspdg-~~Lasgs~Dg~ 698 (913)
.+.+|.+.|++++|+| ++.+||+|+.|++|+|||+.++ +.+..+.+|...|.+|+|+|++ .+|++++.|++
T Consensus 70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dgt 149 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMV 149 (493)
T ss_pred eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCE
Confidence 4789999999999999 8899999999999999999764 3567889999999999999985 69999999999
Q ss_pred EEEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeCCc----eEEEEecCCCEEE
Q 002519 699 VRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGT----AQMRFQPHLGRYL 774 (913)
Q Consensus 699 V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~----~~v~~s~~~~~ll 774 (913)
|+|||+++ +..+..+.+|...|.+++|+|++. +|++++.|+.|+|||+++++.+..+.++. ..+.|.++++.++
T Consensus 150 VrIWDl~t-g~~~~~l~~h~~~V~sla~spdG~-lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~iv 227 (493)
T PTZ00421 150 VNVWDVER-GKAVEVIKCHSDQITSLEWNLDGS-LLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLII 227 (493)
T ss_pred EEEEECCC-CeEEEEEcCCCCceEEEEEECCCC-EEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEE
Confidence 99999997 667888889999999999999976 56699999999999999999887776543 3567888888888
Q ss_pred EEEc----CCeEEEEECCCCe-EEEEecCC-CCCeEEEEEcCCCCEEEEEeC-C-eEEEEECCCCCCCceEEEeec-CCC
Q 002519 775 AAAA----ENVVSILDAETQA-CRLSLQGH-TKPIDSVCWDPSGELLASVSE-D-SVRVWTVGSGSEGECVHELSC-NGN 845 (913)
Q Consensus 775 ~~~~----dg~I~i~D~~t~~-~~~~l~~h-~~~V~sl~~spdg~~l~s~s~-d-~I~vwdl~~~~~~~~i~~~~~-~~~ 845 (913)
+++. |+.|++||+++.. ++..+..+ ...+....|++++++|++++. | .|++||+.++. .+..... +..
T Consensus 228 t~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~---~~~~~~~~s~~ 304 (493)
T PTZ00421 228 TLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNER---LTFCSSYSSVE 304 (493)
T ss_pred EEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCc---eEEEeeccCCC
Confidence 7653 7899999998764 44333333 345666789999998888774 6 99999998763 3332222 344
Q ss_pred ceEEEEEeCC
Q 002519 846 KFHSCVFHPT 855 (913)
Q Consensus 846 ~i~~l~~sp~ 855 (913)
.+..++|.|.
T Consensus 305 ~~~g~~~~pk 314 (493)
T PTZ00421 305 PHKGLCMMPK 314 (493)
T ss_pred CCcceEeccc
Confidence 5777788775
No 90
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=3.5e-24 Score=217.70 Aligned_cols=269 Identities=18% Similarity=0.254 Sum_probs=216.4
Q ss_pred CCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCcee
Q 002519 632 STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSL 711 (913)
Q Consensus 632 H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~ 711 (913)
-.+.|..|.|++.+..|++++.||++++||+........+ .|..++.+++|.+ ...+++|+.||.|+.+|+.++ ..
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~-~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~--~~ 87 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKF-KHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTG--NE 87 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhe-ecCCceeeeeccC-CceEEEeccCceEEEEEecCC--cc
Confidence 3578999999999999999999999999999987555444 4889999999986 568999999999999999973 34
Q ss_pred EEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeCCceEEEEecCCCEEEEEEcCCeEEEEECCCCe
Q 002519 712 RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQA 791 (913)
Q Consensus 712 ~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~s~~~~~ll~~~~dg~I~i~D~~t~~ 791 (913)
..+..|...|.||.+++..+ .+++|+.|++|++||.+...+...+.......+.+..++.|++++.+..|.+||+++..
T Consensus 88 ~~igth~~~i~ci~~~~~~~-~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~~ 166 (323)
T KOG1036|consen 88 DQIGTHDEGIRCIEYSYEVG-CVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDVSGNRLVVGTSDRKVLIYDLRNLD 166 (323)
T ss_pred eeeccCCCceEEEEeeccCC-eEEEcccCccEEEEeccccccccccccCceEEEEeccCCEEEEeecCceEEEEEccccc
Confidence 55667999999999998655 45599999999999999877777776666667778888999999999999999999876
Q ss_pred EEEEecC--CCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCC-CCCceEEEeecCC---------CceEEEEEeCCCCE
Q 002519 792 CRLSLQG--HTKPIDSVCWDPSGELLASVSED-SVRVWTVGSG-SEGECVHELSCNG---------NKFHSCVFHPTYPS 858 (913)
Q Consensus 792 ~~~~l~~--h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~-~~~~~i~~~~~~~---------~~i~~l~~sp~g~~ 858 (913)
....... ..-.++||++-|++.-+++++-| .|.+=.+... ........+++|. .+|++++|||-...
T Consensus 167 ~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~t 246 (323)
T KOG1036|consen 167 EPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGT 246 (323)
T ss_pred chhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccce
Confidence 5543322 34568999999988856666655 5555444332 1123334455543 36899999999999
Q ss_pred EEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEeC
Q 002519 859 LLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASH 905 (913)
Q Consensus 859 l~s~s~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~Lasgs~ 905 (913)
|++|+.||.|.+||+.+.+.+ .+...+..|..++|+.+|..||+|+.
T Consensus 247 faTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 247 FATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred EEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 999999999999999998877 66667788999999999999999873
No 91
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.93 E-value=1.1e-23 Score=237.27 Aligned_cols=294 Identities=15% Similarity=0.249 Sum_probs=232.9
Q ss_pred ccCccceeeeEeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCE-EEEEeCC
Q 002519 618 SQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPR-LATSSFD 696 (913)
Q Consensus 618 ~~~~~~~~~~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~-Lasgs~D 696 (913)
++--+-+.+.++.++.+.|++|.=+|-=..+|.|..+|+|.|++++.++.+.+|+...+.|++++|.-||+. +++|+..
T Consensus 187 ~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~ 266 (910)
T KOG1539|consen 187 WNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSN 266 (910)
T ss_pred EEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccCC
Confidence 333345889999999999999999998889999999999999999999999999977799999999999985 5677778
Q ss_pred CeEEEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCe------------------------
Q 002519 697 KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS------------------------ 752 (913)
Q Consensus 697 g~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~------------------------ 752 (913)
|.+.+||++...........|.+.|..+.|.+.. .++++++.|+.+++|=.+++.
T Consensus 267 G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~e-pVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~ 345 (910)
T KOG1539|consen 267 GDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGE-PVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGS 345 (910)
T ss_pred ceEEEEEcCCCeeeeeeeccccCCcccceecCCC-ceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeecc
Confidence 9999999987333323333555555555555542 244455555544444221000
Q ss_pred --------------------------------------------------------------------------------
Q 002519 753 -------------------------------------------------------------------------------- 752 (913)
Q Consensus 753 -------------------------------------------------------------------------------- 752 (913)
T Consensus 346 ~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~ 425 (910)
T KOG1539|consen 346 QGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAY 425 (910)
T ss_pred CcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEE
Confidence
Q ss_pred --------e-eEEe--------eCCceEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEe---cCCCCCeEEEEEcCCC
Q 002519 753 --------C-TRVF--------KGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSL---QGHTKPIDSVCWDPSG 812 (913)
Q Consensus 753 --------~-~~~~--------~~~~~~v~~s~~~~~ll~~~~dg~I~i~D~~t~~~~~~l---~~h~~~V~sl~~spdg 812 (913)
. ...+ ...+.+++.++.|+..+.|.+.|.|.+|++.+|....++ ..|..+|++++.+.-+
T Consensus 426 tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n 505 (910)
T KOG1539|consen 426 TWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTN 505 (910)
T ss_pred EEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCC
Confidence 0 0000 012345778888888999999999999999999888888 4799999999999989
Q ss_pred CEEEEEeCC-eEEEEECCCCC--------------------------------------CCceEEEeecCCCceEEEEEe
Q 002519 813 ELLASVSED-SVRVWTVGSGS--------------------------------------EGECVHELSCNGNKFHSCVFH 853 (913)
Q Consensus 813 ~~l~s~s~d-~I~vwdl~~~~--------------------------------------~~~~i~~~~~~~~~i~~l~~s 853 (913)
+.+++++.+ -+++||+.+.. ..+.++++.+|.+.|++++||
T Consensus 506 ~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS 585 (910)
T KOG1539|consen 506 RLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFS 585 (910)
T ss_pred ceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeC
Confidence 989988888 99999987542 012234556789999999999
Q ss_pred CCCCEEEEEEcCCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEeCC-CcEEEe
Q 002519 854 PTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHD-KFVKLW 912 (913)
Q Consensus 854 p~g~~l~s~s~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~D-G~I~IW 912 (913)
|||++|++++.|++|++||+.++.++-...-+.++..+.|+|+|.+|||+..| .-|++|
T Consensus 586 ~DgrWlisasmD~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~LAT~Hvd~~gIylW 645 (910)
T KOG1539|consen 586 PDGRWLISASMDSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFLATVHVDQNGIYLW 645 (910)
T ss_pred CCCcEEEEeecCCcEEEEeccCcceeeeEecCCcceeeEECCCCCEEEEEEecCceEEEE
Confidence 99999999999999999999999999888889999999999999999999988 669999
No 92
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=1.5e-24 Score=241.31 Aligned_cols=237 Identities=19% Similarity=0.310 Sum_probs=206.8
Q ss_pred CCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEecc-CCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCcee
Q 002519 633 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE-HSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSL 711 (913)
Q Consensus 633 ~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~-h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~ 711 (913)
.+.|+++.|+++|.+||+|..+|.|.|||..+.+.+..+.+ |...|-+++|. +..+.+|+.|+.|.++|++......
T Consensus 217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~ 294 (484)
T KOG0305|consen 217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVV 294 (484)
T ss_pred CCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhh
Confidence 67899999999999999999999999999999999999999 99999999998 6789999999999999999866555
Q ss_pred EEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEe---eCCceEEEEecCCCEEEEEEc---CCeEEEE
Q 002519 712 RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF---KGGTAQMRFQPHLGRYLAAAA---ENVVSIL 785 (913)
Q Consensus 712 ~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~---~~~~~~v~~s~~~~~ll~~~~---dg~I~i~ 785 (913)
.++.+|...|+.+.|++|+. .+++|+.|+.|.|||.........+ ...+..++|+|....+++.+. |+.|++|
T Consensus 295 ~~~~~H~qeVCgLkws~d~~-~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fw 373 (484)
T KOG0305|consen 295 STLQGHRQEVCGLKWSPDGN-QLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFW 373 (484)
T ss_pred hhhhcccceeeeeEECCCCC-eeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEE
Confidence 66889999999999999976 5679999999999999666655554 456678899998866666443 8999999
Q ss_pred ECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEE-eCC--eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEEE
Q 002519 786 DAETQACRLSLQGHTKPIDSVCWDPSGELLASV-SED--SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVI 862 (913)
Q Consensus 786 D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~-s~d--~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~ 862 (913)
|..+++.+..+. ....|.+|.|++..+-|+++ +.. .|.||++.+. ..+..+.+|...|..++++|||..|+++
T Consensus 374 n~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~---~~~~~l~gH~~RVl~la~SPdg~~i~t~ 449 (484)
T KOG0305|consen 374 NTNTGARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSM---KLVAELLGHTSRVLYLALSPDGETIVTG 449 (484)
T ss_pred EcCCCcEecccc-cCCceeeEEEcCCCCEEEEecCCCCCcEEEEecccc---ceeeeecCCcceeEEEEECCCCCEEEEe
Confidence 999999888776 45789999999988755544 333 8999999764 7888999999999999999999999999
Q ss_pred EcCCeEEEEECCCC
Q 002519 863 GCYQSLELWNMSEN 876 (913)
Q Consensus 863 s~dg~I~iwd~~~~ 876 (913)
+.|.++++|++-..
T Consensus 450 a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 450 AADETLRFWNLFDE 463 (484)
T ss_pred cccCcEEeccccCC
Confidence 99999999998764
No 93
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.93 E-value=4.6e-25 Score=222.80 Aligned_cols=290 Identities=15% Similarity=0.238 Sum_probs=227.4
Q ss_pred eEEEEcCCCccccC---CCCeEEeCCCcchhhhcccccccCCccCceeeecccCCCCCCCCCCcccccccCccceeeeEe
Q 002519 553 LMMFGTDGAGTLTS---PSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSV 629 (913)
Q Consensus 553 ~~~~s~dg~~~~~~---~~~~vWd~~~g~~~~~~~~~~~~g~~d~~v~~~~~~d~~~~~d~~~~~~~~~~~~~~~~~~~l 629 (913)
...|++||...+++ .+++|.|++.+--+.....+. ..+ . ...-..++++
T Consensus 117 ~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~-------------~~~-~--------------qa~hPvIRTl 168 (430)
T KOG0640|consen 117 AAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMI-------------SGD-T--------------QARHPVIRTL 168 (430)
T ss_pred eeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhc-------------cCC-c--------------ccCCceEeeh
Confidence 56799999987774 466887776432211111110 000 0 0123567889
Q ss_pred ecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEec--cCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Q 002519 630 RASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE--EHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP 707 (913)
Q Consensus 630 ~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~--~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~ 707 (913)
-.|.+.|+++.|+|....|++|+.|++|++||+......+.++ .....|.+|.|+|.|.+|+.|..--++++||+++
T Consensus 169 YDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T- 247 (430)
T KOG0640|consen 169 YDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNT- 247 (430)
T ss_pred hhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccc-
Confidence 9999999999999999999999999999999998654444333 3567899999999999999999999999999998
Q ss_pred CceeEEe---ccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeC-----CceEEEEecCCCEEEEEEcC
Q 002519 708 GYSLRTF---MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG-----GTAQMRFQPHLGRYLAAAAE 779 (913)
Q Consensus 708 ~~~~~~~---~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~-----~~~~v~~s~~~~~ll~~~~d 779 (913)
..+.... ..|.+.|+++.+++.++ +.++++.||.|+|||--+++|+.++.. .+.+..|..+++++++.+.|
T Consensus 248 ~QcfvsanPd~qht~ai~~V~Ys~t~~-lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~D 326 (430)
T KOG0640|consen 248 YQCFVSANPDDQHTGAITQVRYSSTGS-LYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKD 326 (430)
T ss_pred eeEeeecCcccccccceeEEEecCCcc-EEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCc
Confidence 4333322 36899999999999977 556999999999999999999988853 34567799999999999999
Q ss_pred CeEEEEECCCCeEEEEecCCC--C---CeEEEEEcCCCCEEEEEeCC--eEEEEECCCCCCCceEEEeecCCCceEEEEE
Q 002519 780 NVVSILDAETQACRLSLQGHT--K---PIDSVCWDPSGELLASVSED--SVRVWTVGSGSEGECVHELSCNGNKFHSCVF 852 (913)
Q Consensus 780 g~I~i~D~~t~~~~~~l~~h~--~---~V~sl~~spdg~~l~s~s~d--~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~ 852 (913)
..|++|.+.+++++.++.+.. + --+...|+....|++.-.+. .++-||.++...... .-.+|.+.+..+.-
T Consensus 327 S~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l--~slgHn~a~R~i~H 404 (430)
T KOG0640|consen 327 STVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVAL--LSLGHNGAVRWIVH 404 (430)
T ss_pred ceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhh--cccCCCCCceEEEe
Confidence 999999999999999887642 1 13345688888888888776 899999998754332 23467899999999
Q ss_pred eCCCCEEEEEEcCCeEEEEECC
Q 002519 853 HPTYPSLLVIGCYQSLELWNMS 874 (913)
Q Consensus 853 sp~g~~l~s~s~dg~I~iwd~~ 874 (913)
+|.+..|++|+.|..+++|--+
T Consensus 405 SP~~p~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 405 SPVEPAFMTCSDDFRARFWYRR 426 (430)
T ss_pred CCCCCceeeecccceeeeeeec
Confidence 9999999999999999999643
No 94
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.93 E-value=2.9e-24 Score=237.78 Aligned_cols=274 Identities=18% Similarity=0.309 Sum_probs=228.7
Q ss_pred cceeeeEeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCce--eeEeccCCCCeEE-EEECC-CCCEEEEEeCCC
Q 002519 622 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKS--KTNLEEHSSLITD-VRFSP-SMPRLATSSFDK 697 (913)
Q Consensus 622 ~~~~~~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~--~~~l~~h~~~V~~-l~fsp-dg~~Lasgs~Dg 697 (913)
.++.-+.+++|...|..|++.+.. .+++++.||+++||+-..... ...+.+|.+.|.+ ++|-+ ++-+|++|+.|+
T Consensus 3 ~Y~ls~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~ 81 (745)
T KOG0301|consen 3 QYKLSHELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDT 81 (745)
T ss_pred cceeEEEeccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccc
Confidence 356778899999999999876554 899999999999999754433 3557788888888 88875 445799999999
Q ss_pred eEEEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeCC---ceEEEEecCCCEEE
Q 002519 698 TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG---TAQMRFQPHLGRYL 774 (913)
Q Consensus 698 ~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~---~~~v~~s~~~~~ll 774 (913)
+|.+|.+.. ..++.++++|...|+|+....++. +++|+.|.++++|.+. ++...+.+| +..+...|++ .++
T Consensus 82 ~i~v~~~~~-~~P~~~LkgH~snVC~ls~~~~~~--~iSgSWD~TakvW~~~--~l~~~l~gH~asVWAv~~l~e~-~~v 155 (745)
T KOG0301|consen 82 TIIVFKLSQ-AEPLYTLKGHKSNVCSLSIGEDGT--LISGSWDSTAKVWRIG--ELVYSLQGHTASVWAVASLPEN-TYV 155 (745)
T ss_pred eEEEEecCC-CCchhhhhccccceeeeecCCcCc--eEecccccceEEecch--hhhcccCCcchheeeeeecCCC-cEE
Confidence 999999987 788999999999999999876654 5699999999999875 444445554 4556777776 999
Q ss_pred EEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEeecCCCceEEEEEe
Q 002519 775 AAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFH 853 (913)
Q Consensus 775 ~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~s 853 (913)
+|+.|.+|++|.. ++++.+|.+|.+.|+.+++-+++. |++|+.| .|++|++ ++ .++.+..+|.+.+.++...
T Consensus 156 TgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~-flScsNDg~Ir~w~~-~g---e~l~~~~ghtn~vYsis~~ 228 (745)
T KOG0301|consen 156 TGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSH-FLSCSNDGSIRLWDL-DG---EVLLEMHGHTNFVYSISMA 228 (745)
T ss_pred eccCcceeeeccC--CchhhhhccchhheeeeEEecCCC-eEeecCCceEEEEec-cC---ceeeeeeccceEEEEEEec
Confidence 9999999999987 778899999999999999998765 5566666 9999999 33 7899999999999999988
Q ss_pred CCCCEEEEEEcCCeEEEEECCCCcEEEEcccCC-CeEEEEEeCCCCEEEEEeCCCcEEEe
Q 002519 854 PTYPSLLVIGCYQSLELWNMSENKTMTLTAHEG-LIAALAVSTETGYVASASHDKFVKLW 912 (913)
Q Consensus 854 p~g~~l~s~s~dg~I~iwd~~~~~~~~~~~h~~-~V~~l~~spdg~~Lasgs~DG~I~IW 912 (913)
.++..|++++.|++++||+.. ++.....|.. .|+++++-++|. |++|+.||.||||
T Consensus 229 ~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVf 285 (745)
T KOG0301|consen 229 LSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVF 285 (745)
T ss_pred CCCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCC-EEEeccCceEEEE
Confidence 888899999999999999987 5554445555 899999988886 6678889999998
No 95
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=3.3e-24 Score=227.76 Aligned_cols=271 Identities=20% Similarity=0.281 Sum_probs=220.6
Q ss_pred eeEeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceee----E-------------e-ccCCCCeEEEEECCCC
Q 002519 626 ANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKT----N-------------L-EEHSSLITDVRFSPSM 687 (913)
Q Consensus 626 ~~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~----~-------------l-~~h~~~V~~l~fspdg 687 (913)
+..+..|.-.|+||++++|.+++++++.|++|.-|++.+++..+ . - +.|...|.+++.++|+
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg 214 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG 214 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence 67788999999999999999999999999999999998776331 1 1 2688899999999999
Q ss_pred CEEEEEeCCCeEEEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeCC---ceEE
Q 002519 688 PRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG---TAQM 764 (913)
Q Consensus 688 ~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~---~~~v 764 (913)
+|||+|+.|..|.||+.++ ...+..+.+|.+.|.+++|-.....+ ++++.|+.|++|++.....+.++-++ +..+
T Consensus 215 kylatgg~d~~v~Iw~~~t-~ehv~~~~ghr~~V~~L~fr~gt~~l-ys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~I 292 (479)
T KOG0299|consen 215 KYLATGGRDRHVQIWDCDT-LEHVKVFKGHRGAVSSLAFRKGTSEL-YSASADRSVKVWSIDQLSYVETLYGHQDGVLGI 292 (479)
T ss_pred cEEEecCCCceEEEecCcc-cchhhcccccccceeeeeeecCccce-eeeecCCceEEEehhHhHHHHHHhCCccceeee
Confidence 9999999999999999998 77888999999999999998765555 49999999999999988777776554 3445
Q ss_pred EEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEee--
Q 002519 765 RFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELS-- 841 (913)
Q Consensus 765 ~~s~~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~-- 841 (913)
........+-+++.|+++++|++. .+....+.+|.+.+.|++|..+ ..|++|+++ .|.+|++-+.. .+....
T Consensus 293 daL~reR~vtVGgrDrT~rlwKi~-eesqlifrg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~KKk---plf~~~~A 367 (479)
T KOG0299|consen 293 DALSRERCVTVGGRDRTVRLWKIP-EESQLIFRGGEGSIDCVAFIND-EHFVSGSDNGSIALWSLLKKK---PLFTSRLA 367 (479)
T ss_pred chhcccceEEeccccceeEEEecc-ccceeeeeCCCCCeeeEEEecc-cceeeccCCceEEEeeecccC---ceeEeecc
Confidence 555555666666789999999994 4455567888999999999854 567788888 99999997652 222211
Q ss_pred ----------cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCc----EEEEcccCCCeEEEEEeCCCCEEEEE
Q 002519 842 ----------CNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK----TMTLTAHEGLIAALAVSTETGYVASA 903 (913)
Q Consensus 842 ----------~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~----~~~~~~h~~~V~~l~~spdg~~Lasg 903 (913)
.+..+|++++..|..+++++|+.+|.|++|-+.++- ++.-..-.+.|++|+|+++|++|++|
T Consensus 368 Hgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~sgk~ivag 443 (479)
T KOG0299|consen 368 HGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLVGFVNSLAFSNSGKRIVAG 443 (479)
T ss_pred ccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecccccEEEEEEEccCCCEEEEe
Confidence 112379999999999999999999999999998882 33334477899999999999966554
No 96
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=5.2e-24 Score=216.44 Aligned_cols=257 Identities=21% Similarity=0.382 Sum_probs=209.7
Q ss_pred EEEEEeCCCcEEEEECCC------------CceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCceeEEe
Q 002519 647 LLATGGHDKKAVLWHTDT------------LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTF 714 (913)
Q Consensus 647 ~Lasgs~Dg~V~vwd~~~------------~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~ 714 (913)
.|++|++...|.-+++.. ...+..+..|.+.|++|+.+ +.++|+||.|.+|+|||+.. ...+..+
T Consensus 3 ~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k-~~qlg~l 79 (362)
T KOG0294|consen 3 EIIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRK-RKQLGIL 79 (362)
T ss_pred eEEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccc-hhhhcce
Confidence 467777777777666542 22356677899999999985 78999999999999999997 6677788
Q ss_pred ccCCCCeEEEEEcCCCC--eEEEEEeCCCcEEEEEcCCCeeeEEeeC---CceEEEEecCCCEEEEEEcCCeEEEEECCC
Q 002519 715 MGHSASVMSLDFHPNKD--DLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAAENVVSILDAET 789 (913)
Q Consensus 715 ~~h~~~V~sl~fsp~~~--~ll~sgs~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~s~~~~~ll~~~~dg~I~i~D~~t 789 (913)
..|.+.|+++.|.+.-. +|| +|++||.|.+|+.....++..++. .++.++++|.+...++.+.|+.+++|++-+
T Consensus 80 l~HagsitaL~F~~~~S~shLl-S~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~ 158 (362)
T KOG0294|consen 80 LSHAGSITALKFYPPLSKSHLL-SGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVR 158 (362)
T ss_pred eccccceEEEEecCCcchhhee-eecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhc
Confidence 88999999999998753 566 999999999999999988888765 467899999999999999999999999999
Q ss_pred CeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEE
Q 002519 790 QACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLE 869 (913)
Q Consensus 790 ~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~ 869 (913)
++.-+.+.- ...-+.|.|+|.|.+|+.+..+.|-||.+.+.. .+.++.. ...+.++.|- ++..+++|+.++.|.
T Consensus 159 Gr~a~v~~L-~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~---v~~~i~~-~~r~l~~~~l-~~~~L~vG~d~~~i~ 232 (362)
T KOG0294|consen 159 GRVAFVLNL-KNKATLVSWSPQGDHFVVSGRNKIDIYQLDNAS---VFREIEN-PKRILCATFL-DGSELLVGGDNEWIS 232 (362)
T ss_pred Cccceeecc-CCcceeeEEcCCCCEEEEEeccEEEEEecccHh---Hhhhhhc-cccceeeeec-CCceEEEecCCceEE
Confidence 876665542 223345999999999999999999999987652 2222221 2345555554 567899999999999
Q ss_pred EEECCCCcEE-EEcccCCCeEEEEE--eCCCCEEEEEeCCCcEEEeC
Q 002519 870 LWNMSENKTM-TLTAHEGLIAALAV--STETGYVASASHDKFVKLWK 913 (913)
Q Consensus 870 iwd~~~~~~~-~~~~h~~~V~~l~~--spdg~~Lasgs~DG~I~IWd 913 (913)
+||.+...+. .+.+|+..|.++.+ .|++.+|+|+|.||.|+|||
T Consensus 233 ~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd 279 (362)
T KOG0294|consen 233 LKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWD 279 (362)
T ss_pred EeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEE
Confidence 9999987766 78899999999985 46788999999999999997
No 97
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=4.4e-24 Score=216.43 Aligned_cols=275 Identities=20% Similarity=0.303 Sum_probs=222.2
Q ss_pred EEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCceeEEec
Q 002519 636 VICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFM 715 (913)
Q Consensus 636 V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~ 715 (913)
..||.|++.|.+||+|+.||.|.|||+.+...-+.+.+|..+|++++|++||+.|+|+|.|..|.+||+.. +.++..+.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~-gs~l~rir 104 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLK-GSPLKRIR 104 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccC-CCceeEEE
Confidence 88999999999999999999999999999999999999999999999999999999999999999999998 55666665
Q ss_pred cCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCee--eEEe-----eCCceEEEEecCCCEEEEEEcCCeEEEEECC
Q 002519 716 GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC--TRVF-----KGGTAQMRFQPHLGRYLAAAAENVVSILDAE 788 (913)
Q Consensus 716 ~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~--~~~~-----~~~~~~v~~s~~~~~ll~~~~dg~I~i~D~~ 788 (913)
...+|+.+.|+|...+.++++-.+..-.+.++...+. +..- .....+..|.+.++++++|...|.+.+||..
T Consensus 105 -f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~ 183 (405)
T KOG1273|consen 105 -FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAE 183 (405)
T ss_pred -ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecc
Confidence 6789999999998877776666666566666654321 1111 1112334588899999999999999999999
Q ss_pred CCeEEEEecCCC-CCeEEEEEcCCCCEEEEEeCC-eEEEEECCCC------CCCceEEEee--cCCCceEEEEEeCCCCE
Q 002519 789 TQACRLSLQGHT-KPIDSVCWDPSGELLASVSED-SVRVWTVGSG------SEGECVHELS--CNGNKFHSCVFHPTYPS 858 (913)
Q Consensus 789 t~~~~~~l~~h~-~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~------~~~~~i~~~~--~~~~~i~~l~~sp~g~~ 858 (913)
+.+++..++-.. ..|..|.|+..|++|++-+.| .||.|+++.- .+.+..+.+. .......+|+|+.+|.|
T Consensus 184 t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeY 263 (405)
T KOG1273|consen 184 TLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEY 263 (405)
T ss_pred hheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccE
Confidence 999999988766 789999999999999999999 9999998632 1111111111 12334678999999999
Q ss_pred EEEEEcC-CeEEEEECCCCcEE-EEcccC-CCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 002519 859 LLVIGCY-QSLELWNMSENKTM-TLTAHE-GLIAALAVSTETGYVASASHDKFVKLWK 913 (913)
Q Consensus 859 l~s~s~d-g~I~iwd~~~~~~~-~~~~h~-~~V~~l~~spdg~~Lasgs~DG~I~IWd 913 (913)
+++++.. ..++||....|.++ .+.+.. ....++.|+|-...|++- ..|.|+||.
T Consensus 264 v~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~ 320 (405)
T KOG1273|consen 264 VCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWA 320 (405)
T ss_pred EEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec-cCCceEEEE
Confidence 9988854 48999999999988 455555 578889999998888877 788999993
No 98
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=1.8e-22 Score=195.75 Aligned_cols=247 Identities=19% Similarity=0.341 Sum_probs=208.0
Q ss_pred eeeeEeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCc-----eeeEeccCCCCeEEEEECCC----CCEEEEEe
Q 002519 624 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK-----SKTNLEEHSSLITDVRFSPS----MPRLATSS 694 (913)
Q Consensus 624 ~~~~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~-----~~~~l~~h~~~V~~l~fspd----g~~Lasgs 694 (913)
-..+.-+.|.+.|+|.+|||+|.+||+|+.|++|++..+.... ....|.-|.+.|.+++|-.+ +.+|++++
T Consensus 80 v~~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~g 159 (350)
T KOG0641|consen 80 VLCKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAG 159 (350)
T ss_pred EEeeeccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecC
Confidence 3445567899999999999999999999999999998765322 23457779999999999643 45777776
Q ss_pred C-CCeEEEEEcCCCCceeEEeccCCCCeEEEE-EcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeC----------Cce
Q 002519 695 F-DKTVRVWDADNPGYSLRTFMGHSASVMSLD-FHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG----------GTA 762 (913)
Q Consensus 695 ~-Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~-fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~----------~~~ 762 (913)
. |..|++-|... +..+..+.+|.+.|.++- |+ +.+|++|+.|.+|++||++-..++.++.. .+.
T Consensus 160 agdc~iy~tdc~~-g~~~~a~sghtghilalyswn---~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessava 235 (350)
T KOG0641|consen 160 AGDCKIYITDCGR-GQGFHALSGHTGHILALYSWN---GAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVA 235 (350)
T ss_pred CCcceEEEeecCC-CCcceeecCCcccEEEEEEec---CcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeE
Confidence 5 77888888877 778899999999998763 43 45888999999999999999998887632 356
Q ss_pred EEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCC-CCCceEEEe
Q 002519 763 QMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSG-SEGECVHEL 840 (913)
Q Consensus 763 ~v~~s~~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~-~~~~~i~~~ 840 (913)
.+++.|.+..++++-.|....+||++.++.+..+..|...|.|+.|+|...|+++|+.| .|++-|+... .....+..+
T Consensus 236 av~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv 315 (350)
T KOG0641|consen 236 AVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVV 315 (350)
T ss_pred EEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEE
Confidence 78899999999999999999999999999999999999999999999999999999999 9999998643 122345556
Q ss_pred ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 002519 841 SCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMS 874 (913)
Q Consensus 841 ~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~ 874 (913)
..|..++..|.|+|..-.+++.+.|.++.+|-+.
T Consensus 316 ~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 316 AEHKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred EeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 6788999999999999999999999999999764
No 99
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.92 E-value=2.3e-24 Score=229.59 Aligned_cols=275 Identities=19% Similarity=0.300 Sum_probs=231.9
Q ss_pred cCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCC---CceeeEec--cCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcC
Q 002519 631 ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT---LKSKTNLE--EHSSLITDVRFSPSMPRLATSSFDKTVRVWDAD 705 (913)
Q Consensus 631 ~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~---~~~~~~l~--~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~ 705 (913)
.|..-|.++.+|...++++||+ .|.|+|||+.. ...+..+. .-...|.++.+.|||+.|++|++-.+|.|||+.
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgG-kgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLA 495 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLA 495 (705)
T ss_pred ccCcEEEEEEecCCcceeEecC-CCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeecc
Confidence 5888899999999999999997 57899999973 23333333 245679999999999999999999999999998
Q ss_pred CCCceeE-EeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeC---CceEEEEecCCCEEEEEEcCCe
Q 002519 706 NPGYSLR-TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAAENV 781 (913)
Q Consensus 706 ~~~~~~~-~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~s~~~~~ll~~~~dg~ 781 (913)
.+...++ .+....-.+++++.+||.+ +.++|..||.|.|||+.+...++.|.+ +..+|.++.+|..|.+++-|++
T Consensus 496 apTprikaeltssapaCyALa~spDak-vcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDnt 574 (705)
T KOG0639|consen 496 APTPRIKAELTSSAPACYALAISPDAK-VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNT 574 (705)
T ss_pred CCCcchhhhcCCcchhhhhhhcCCccc-eeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccc
Confidence 7554333 2333334677899999977 445888899999999999999999987 4678999999999999999999
Q ss_pred EEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEE
Q 002519 782 VSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLL 860 (913)
Q Consensus 782 I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~ 860 (913)
|+.||+++++.+.... ....|.++.++|.+.+|++|-++ .+.|...... ..+.+.-|+..|.++.|.+.|++++
T Consensus 575 vRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMens~vevlh~skp----~kyqlhlheScVLSlKFa~cGkwfv 649 (705)
T KOG0639|consen 575 VRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKP----EKYQLHLHESCVLSLKFAYCGKWFV 649 (705)
T ss_pred eeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecccCcEEEEecCCc----cceeecccccEEEEEEecccCceee
Confidence 9999999987655433 45779999999999999999988 8888777543 3345666788999999999999999
Q ss_pred EEEcCCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEe
Q 002519 861 VIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLW 912 (913)
Q Consensus 861 s~s~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~DG~I~IW 912 (913)
+.+.|+.+..|...-|..+.-....+.|.++.++.|.++|+||+.|+...||
T Consensus 650 StGkDnlLnawrtPyGasiFqskE~SsVlsCDIS~ddkyIVTGSGdkkATVY 701 (705)
T KOG0639|consen 650 STGKDNLLNAWRTPYGASIFQSKESSSVLSCDISFDDKYIVTGSGDKKATVY 701 (705)
T ss_pred ecCchhhhhhccCccccceeeccccCcceeeeeccCceEEEecCCCcceEEE
Confidence 9999999999999999988888888999999999999999999999887776
No 100
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.92 E-value=1.7e-22 Score=221.00 Aligned_cols=262 Identities=13% Similarity=0.114 Sum_probs=204.1
Q ss_pred CCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEE-EEEeCCCeEEEEEcCCCCceeEEeccCCCCeEE
Q 002519 645 GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRL-ATSSFDKTVRVWDADNPGYSLRTFMGHSASVMS 723 (913)
Q Consensus 645 g~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~L-asgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~s 723 (913)
++++++++.|+.|++||+.+++.+..+..+.. +.+++|+|+++.+ ++++.++.|++||+.+ +..+..+..+.. +..
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~-~~~~~~~~~~~~-~~~ 77 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLAT-GEVIGTLPSGPD-PEL 77 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCC-CcEEEeccCCCC-ccE
Confidence 35788999999999999999998888876644 7789999999977 5667789999999987 555555554433 567
Q ss_pred EEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeC--CceEEEEecCCCEEEEEEcCC-eEEEEECCCCeEEEEecCCC
Q 002519 724 LDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG--GTAQMRFQPHLGRYLAAAAEN-VVSILDAETQACRLSLQGHT 800 (913)
Q Consensus 724 l~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~--~~~~v~~s~~~~~ll~~~~dg-~I~i~D~~t~~~~~~l~~h~ 800 (913)
++|+|+++.++++++.|+.|++||+++.+.+..+.. ....+.|++++..++++..++ .+.+||.++++.+..+.. .
T Consensus 78 ~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~-~ 156 (300)
T TIGR03866 78 FALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV-D 156 (300)
T ss_pred EEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc-C
Confidence 899999987877777899999999999888777753 356789999999988888765 577889998877665442 3
Q ss_pred CCeEEEEEcCCCCEEEEEe-CC-eEEEEECCCCCCCceEEEeecC-------CCceEEEEEeCCCCEEEEE-EcCCeEEE
Q 002519 801 KPIDSVCWDPSGELLASVS-ED-SVRVWTVGSGSEGECVHELSCN-------GNKFHSCVFHPTYPSLLVI-GCYQSLEL 870 (913)
Q Consensus 801 ~~V~sl~~spdg~~l~s~s-~d-~I~vwdl~~~~~~~~i~~~~~~-------~~~i~~l~~sp~g~~l~s~-s~dg~I~i 870 (913)
..+.+++|++++.+|++++ .+ .|++||+.++. ++..+..+ ......++|+|++++++++ +.++.|.+
T Consensus 157 ~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v 233 (300)
T TIGR03866 157 QRPRFAEFTADGKELWVSSEIGGTVSVIDVATRK---VIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAV 233 (300)
T ss_pred CCccEEEECCCCCEEEEEcCCCCEEEEEEcCcce---eeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEE
Confidence 3457899999999876554 45 99999998763 33333211 1123468899999986654 45678999
Q ss_pred EECCCCcEEEEcccCCCeEEEEEeCCCCEEEEE-eCCCcEEEeC
Q 002519 871 WNMSENKTMTLTAHEGLIAALAVSTETGYVASA-SHDKFVKLWK 913 (913)
Q Consensus 871 wd~~~~~~~~~~~h~~~V~~l~~spdg~~Lasg-s~DG~I~IWd 913 (913)
||+.+++......+...+.+++|+|++++|+++ +.+|.|+|||
T Consensus 234 ~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d 277 (300)
T TIGR03866 234 VDAKTYEVLDYLLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVID 277 (300)
T ss_pred EECCCCcEEEEEEeCCCcceEEECCCCCEEEEEcCCCCeEEEEE
Confidence 999998887555566789999999999999886 4689999997
No 101
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.92 E-value=1.8e-23 Score=211.39 Aligned_cols=229 Identities=17% Similarity=0.304 Sum_probs=189.0
Q ss_pred eEeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCC--EEEEEeCCCeEEEEEc
Q 002519 627 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP--RLATSSFDKTVRVWDA 704 (913)
Q Consensus 627 ~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~--~Lasgs~Dg~V~Iwdl 704 (913)
+....|.++|.|++|+.||..+++|+.|+.+++||+.++ .+..+..|.++|.++.|-+... .|+|||.|++|+.||.
T Consensus 66 ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~-Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~ 144 (347)
T KOG0647|consen 66 KAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG-QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDT 144 (347)
T ss_pred hhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC-CeeeeeecccceeEEEEecCCCcceeEecccccceeeccc
Confidence 345679999999999999999999999999999999998 5778889999999999987766 8999999999999999
Q ss_pred CCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeee-----EEeeCCceEEEEecCCCEEEEEEcC
Q 002519 705 DNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT-----RVFKGGTAQMRFQPHLGRYLAAAAE 779 (913)
Q Consensus 705 ~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~-----~~~~~~~~~v~~s~~~~~ll~~~~d 779 (913)
+. ..++.++. ..+.|++++.-. .+++.+..++.|.+|+++++... ..++-.+.++++..+...++.|+-+
T Consensus 145 R~-~~pv~t~~-LPeRvYa~Dv~~---pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiE 219 (347)
T KOG0647|consen 145 RS-SNPVATLQ-LPERVYAADVLY---PMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIE 219 (347)
T ss_pred CC-CCeeeeee-ccceeeehhccC---ceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeec
Confidence 97 55555554 557788877653 36778888999999999876432 2234456788888888888999999
Q ss_pred CeEEEEECCCC--eEEEEecCCCC---------CeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEeecCCCce
Q 002519 780 NVVSILDAETQ--ACRLSLQGHTK---------PIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKF 847 (913)
Q Consensus 780 g~I~i~D~~t~--~~~~~l~~h~~---------~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i 847 (913)
|.+.|..+..+ +.-++|+.|+. .|++|+|+|....|++++.| ++.+||-... ..++....+..+|
T Consensus 220 Grv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar---~kLk~s~~~~qpI 296 (347)
T KOG0647|consen 220 GRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDAR---TKLKTSETHPQPI 296 (347)
T ss_pred ceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhh---hhhhccCcCCCcc
Confidence 99999888776 66667777763 47889999988888888888 9999998654 5666777789999
Q ss_pred EEEEEeCCCCEEEEEEc
Q 002519 848 HSCVFHPTYPSLLVIGC 864 (913)
Q Consensus 848 ~~l~~sp~g~~l~s~s~ 864 (913)
++|+|+.+|.+++.+..
T Consensus 297 tcc~fn~~G~ifaYA~g 313 (347)
T KOG0647|consen 297 TCCSFNRNGSIFAYALG 313 (347)
T ss_pred ceeEecCCCCEEEEEee
Confidence 99999999998887754
No 102
>PTZ00420 coronin; Provisional
Probab=99.92 E-value=7.6e-23 Score=236.95 Aligned_cols=228 Identities=16% Similarity=0.221 Sum_probs=176.8
Q ss_pred eeeeEeecCCCCEEEEEEecC-CCEEEEEeCCCcEEEEECCCCc--------eeeEeccCCCCeEEEEECCCCCE-EEEE
Q 002519 624 KEANSVRASTSKVICCHFSSD-GKLLATGGHDKKAVLWHTDTLK--------SKTNLEEHSSLITDVRFSPSMPR-LATS 693 (913)
Q Consensus 624 ~~~~~l~~H~~~V~~l~fspd-g~~Lasgs~Dg~V~vwd~~~~~--------~~~~l~~h~~~V~~l~fspdg~~-Lasg 693 (913)
..+..+.+|.+.|.+|+|+|+ +.+||+|+.||+|+|||+.++. .+..+.+|...|.+|+|+|++.. |+++
T Consensus 65 ~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSg 144 (568)
T PTZ00420 65 PPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSS 144 (568)
T ss_pred ceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEE
Confidence 567789999999999999996 7899999999999999997532 34467899999999999999875 5789
Q ss_pred eCCCeEEEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeCCce---E-----EE
Q 002519 694 SFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTA---Q-----MR 765 (913)
Q Consensus 694 s~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~---~-----v~ 765 (913)
+.|++|+|||+++ +..+..+. |...|.+++|+++|. +|++++.|+.|+|||+++++.+..+.++.. . ..
T Consensus 145 S~DgtIrIWDl~t-g~~~~~i~-~~~~V~SlswspdG~-lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~ 221 (568)
T PTZ00420 145 GFDSFVNIWDIEN-EKRAFQIN-MPKKLSSLKWNIKGN-LLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDG 221 (568)
T ss_pred eCCCeEEEEECCC-CcEEEEEe-cCCcEEEEEECCCCC-EEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeee
Confidence 9999999999998 44455554 667899999999987 556888899999999999998888776532 1 12
Q ss_pred EecCCCEEEEEEcCC----eEEEEECCC-CeEEEEecC--CCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceE
Q 002519 766 FQPHLGRYLAAAAEN----VVSILDAET-QACRLSLQG--HTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECV 837 (913)
Q Consensus 766 ~s~~~~~ll~~~~dg----~I~i~D~~t-~~~~~~l~~--h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i 837 (913)
|+++++++++++.++ .|+|||+++ .+++..+.. +...+......++|.++++|+.| .|++|++..+ ....+
T Consensus 222 fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~-~~~~l 300 (568)
T PTZ00420 222 LGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLG-SIRKV 300 (568)
T ss_pred EcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCC-cEEee
Confidence 347888999988764 799999996 455554432 33334444445568889999888 9999999765 22333
Q ss_pred EEeecCCCceEEEEEeCCC
Q 002519 838 HELSCNGNKFHSCVFHPTY 856 (913)
Q Consensus 838 ~~~~~~~~~i~~l~~sp~g 856 (913)
..+. +..++..++|.|+.
T Consensus 301 ~~~~-s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 301 NEYK-SCSPFRSFGFLPKQ 318 (568)
T ss_pred cccc-cCCCccceEEcccc
Confidence 3333 45677889999864
No 103
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=4.3e-24 Score=209.94 Aligned_cols=246 Identities=22% Similarity=0.310 Sum_probs=202.4
Q ss_pred ecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCC---ceeeEeccCCCCeEEEEECC--CCCEEEEEeCCCeEEEEEc
Q 002519 630 RASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL---KSKTNLEEHSSLITDVRFSP--SMPRLATSSFDKTVRVWDA 704 (913)
Q Consensus 630 ~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~---~~~~~l~~h~~~V~~l~fsp--dg~~Lasgs~Dg~V~Iwdl 704 (913)
..|.+.|.++...-.|++|||++.|++|+||.+.+. +.+.+|.+|.++|+.++|.. -|.+||++++||.|.||.-
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke 87 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKE 87 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEec
Confidence 469999999999999999999999999999999843 57889999999999999965 6899999999999999998
Q ss_pred CCCCc-eeEEeccCCCCeEEEEEcCCCC-eEEEEEeCCCcEEEEEcCCC------eeeEEeeCCceEEEEecC---C---
Q 002519 705 DNPGY-SLRTFMGHSASVMSLDFHPNKD-DLICSCDGDGEIRYWSINNG------SCTRVFKGGTAQMRFQPH---L--- 770 (913)
Q Consensus 705 ~~~~~-~~~~~~~h~~~V~sl~fsp~~~-~ll~sgs~Dg~I~iwdl~~~------~~~~~~~~~~~~v~~s~~---~--- 770 (913)
.++.. ....+..|...|++|+|.|.+- .+|++++.||.|.|++++.. +.......++++++|.|. +
T Consensus 88 ~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~ 167 (299)
T KOG1332|consen 88 ENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLV 167 (299)
T ss_pred CCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCcccc
Confidence 87432 3445668999999999999743 45678889999999998765 222334557788888876 3
Q ss_pred --------CEEEEEEcCCeEEEEECCCC--eEEEEecCCCCCeEEEEEcCCC----CEEEEEeCC-eEEEEECCCCCCCc
Q 002519 771 --------GRYLAAAAENVVSILDAETQ--ACRLSLQGHTKPIDSVCWDPSG----ELLASVSED-SVRVWTVGSGSEGE 835 (913)
Q Consensus 771 --------~~ll~~~~dg~I~i~D~~t~--~~~~~l~~h~~~V~sl~~spdg----~~l~s~s~d-~I~vwdl~~~~~~~ 835 (913)
.+|++++.|+.|+||+...+ +...+|.+|.+.|+.++|.|.- .+|++++.| +|.||..+...+.-
T Consensus 168 ~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~w 247 (299)
T KOG1332|consen 168 DQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPW 247 (299)
T ss_pred ccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcc
Confidence 56999999999999998876 3445588999999999999954 389999999 99999987443333
Q ss_pred eEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 002519 836 CVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSE 875 (913)
Q Consensus 836 ~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~ 875 (913)
....++.....+..+.|+..|+.|++++.|+.|.+|.-..
T Consensus 248 k~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 248 KKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENV 287 (299)
T ss_pred cccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCC
Confidence 3334444567899999999999999999999999997543
No 104
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1.3e-22 Score=207.50 Aligned_cols=246 Identities=20% Similarity=0.341 Sum_probs=204.3
Q ss_pred CceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEe-CCCcE
Q 002519 665 LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCD-GDGEI 743 (913)
Q Consensus 665 ~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs-~Dg~I 743 (913)
.+..+.+......|.+|.|+.+|.+|++++.|.+|+|||..+ ++.++++..++-.|..++|......++.+.. .|.+|
T Consensus 4 ~~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~-g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tI 82 (311)
T KOG1446|consen 4 FRPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLS-GKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTI 82 (311)
T ss_pred cccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCC-CceeeEeecccccccEEEEecCCceEEEccCCCCCce
Confidence 345556666788899999999999999999999999999998 7788888888888999999877666664332 38999
Q ss_pred EEEEcCCCeeeEEeeCC---ceEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeC
Q 002519 744 RYWSINNGSCTRVFKGG---TAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSE 820 (913)
Q Consensus 744 ~iwdl~~~~~~~~~~~~---~~~v~~s~~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~ 820 (913)
++.++.+.+.++.|.++ +..++.+|.+..+++++.|++|++||++..++...+.....+ .++|+|+|-++|++..
T Consensus 83 ryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~p--i~AfDp~GLifA~~~~ 160 (311)
T KOG1446|consen 83 RYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRP--IAAFDPEGLIFALANG 160 (311)
T ss_pred EEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCc--ceeECCCCcEEEEecC
Confidence 99999999999999986 467889999999999999999999999988887776544443 4699999999999998
Q ss_pred C-eEEEEECCCCCCCc-eEEEee-cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCC---eEEEEE
Q 002519 821 D-SVRVWTVGSGSEGE-CVHELS-CNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGL---IAALAV 893 (913)
Q Consensus 821 d-~I~vwdl~~~~~~~-~i~~~~-~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~-~~~~h~~~---V~~l~~ 893 (913)
. .|++||+|+..+.. ....+. ........+.|+|+|++|+.++..+.+++.|.-+|.++ .+..+... -...+|
T Consensus 161 ~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~f 240 (311)
T KOG1446|consen 161 SELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATF 240 (311)
T ss_pred CCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEE
Confidence 8 99999999864322 222222 34667899999999999999999999999999999877 44444332 267789
Q ss_pred eCCCCEEEEEeCCCcEEEeC
Q 002519 894 STETGYVASASHDKFVKLWK 913 (913)
Q Consensus 894 spdg~~Lasgs~DG~I~IWd 913 (913)
+||+++|++|++||+|+||+
T Consensus 241 tPds~Fvl~gs~dg~i~vw~ 260 (311)
T KOG1446|consen 241 TPDSKFVLSGSDDGTIHVWN 260 (311)
T ss_pred CCCCcEEEEecCCCcEEEEE
Confidence 99999999999999999996
No 105
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.92 E-value=1.7e-23 Score=231.69 Aligned_cols=252 Identities=20% Similarity=0.357 Sum_probs=216.5
Q ss_pred CCCCCCcccccccCccceeeeEeecCCCCEEE-EEEec-CCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEEC
Q 002519 607 PRDAGGRGMDVSQGFSFKEANSVRASTSKVIC-CHFSS-DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFS 684 (913)
Q Consensus 607 ~~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~-l~fsp-dg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fs 684 (913)
++|+..++|+.... .+.+...+.+|.+.|.+ ++|-+ ++-+|++|+.|++|.||......+..++++|...|+|+...
T Consensus 32 sRd~t~~vw~~~~~-~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~ 110 (745)
T KOG0301|consen 32 SRDGTVKVWAKKGK-QYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIG 110 (745)
T ss_pred CCCCceeeeeccCc-ccccceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecC
Confidence 44555566655333 45566778889999988 88885 55679999999999999999999999999999999999988
Q ss_pred CCCCEEEEEeCCCeEEEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeCCceEE
Q 002519 685 PSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQM 764 (913)
Q Consensus 685 pdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v 764 (913)
.++. |++||.|.+++||.+. .+...+.+|...|+++.+.|++ .++||+.|.+|++|.- ++++++|.+|..++
T Consensus 111 ~~~~-~iSgSWD~TakvW~~~---~l~~~l~gH~asVWAv~~l~e~--~~vTgsaDKtIklWk~--~~~l~tf~gHtD~V 182 (745)
T KOG0301|consen 111 EDGT-LISGSWDSTAKVWRIG---ELVYSLQGHTASVWAVASLPEN--TYVTGSADKTIKLWKG--GTLLKTFSGHTDCV 182 (745)
T ss_pred CcCc-eEecccccceEEecch---hhhcccCCcchheeeeeecCCC--cEEeccCcceeeeccC--Cchhhhhccchhhe
Confidence 8876 9999999999999874 4666799999999999999986 4569999999999986 78888998887665
Q ss_pred E---EecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEe
Q 002519 765 R---FQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHEL 840 (913)
Q Consensus 765 ~---~s~~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~ 840 (913)
+ +.+ +..|++++.||.|++|++ +++++.++.+|+..|+++....++..|+++++| +++||+.. .|...+
T Consensus 183 RgL~vl~-~~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~-----e~~q~I 255 (745)
T KOG0301|consen 183 RGLAVLD-DSHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD-----ECVQVI 255 (745)
T ss_pred eeeEEec-CCCeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC-----ceEEEE
Confidence 4 444 467999999999999999 889999999999999999988888999999999 99999975 677777
Q ss_pred ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 002519 841 SCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSE 875 (913)
Q Consensus 841 ~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~ 875 (913)
......|+++.+-++|+ |++|++||.|+||..+.
T Consensus 256 ~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 256 TLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVDK 289 (745)
T ss_pred ecCccceEEEEEeeCCC-EEEeccCceEEEEEecc
Confidence 77777899999888887 89999999999998764
No 106
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.92 E-value=4.6e-23 Score=205.11 Aligned_cols=231 Identities=21% Similarity=0.297 Sum_probs=207.6
Q ss_pred EeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcC
Q 002519 670 NLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN 749 (913)
Q Consensus 670 ~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~ 749 (913)
.+.+|+.+|+-|.|+.+|.+|++|+.|.++.||-..+ ++.+-++.+|.+.|+|++..-+.+.++ +|+.|.++++||++
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~n-GerlGty~GHtGavW~~Did~~s~~li-TGSAD~t~kLWDv~ 82 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLN-GERLGTYDGHTGAVWCCDIDWDSKHLI-TGSADQTAKLWDVE 82 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecC-CceeeeecCCCceEEEEEecCCcceee-eccccceeEEEEcC
Confidence 4678999999999999999999999999999998877 788999999999999999998877655 99999999999999
Q ss_pred CCeeeEEeeC--CceEEEEecCCCEEEEEEc-----CCeEEEEECC-------CCeEEEEecCCCCCeEEEEEcCCCCEE
Q 002519 750 NGSCTRVFKG--GTAQMRFQPHLGRYLAAAA-----ENVVSILDAE-------TQACRLSLQGHTKPIDSVCWDPSGELL 815 (913)
Q Consensus 750 ~~~~~~~~~~--~~~~v~~s~~~~~ll~~~~-----dg~I~i~D~~-------t~~~~~~l~~h~~~V~sl~~spdg~~l 815 (913)
+|+++..++. .+..+.|+.+++.++++.. .+.|.++|++ ..+++..+..+...++.+.|.|-+++|
T Consensus 83 tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~i 162 (327)
T KOG0643|consen 83 TGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETI 162 (327)
T ss_pred CCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEE
Confidence 9999988765 4677899999988888766 3589999998 456788888899999999999999999
Q ss_pred EEEeCC-eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEcccCCCeEEEEEe
Q 002519 816 ASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVS 894 (913)
Q Consensus 816 ~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~s 894 (913)
++|.++ .|.+||++++. ..+.....|...|+.+.++++..++++++.|.+-++||+.+..++.....+.+|++.+++
T Consensus 163 i~Ghe~G~is~~da~~g~--~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aais 240 (327)
T KOG0643|consen 163 IAGHEDGSISIYDARTGK--ELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAIS 240 (327)
T ss_pred EEecCCCcEEEEEcccCc--eeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeecccccceecc
Confidence 999999 99999999874 455666778889999999999999999999999999999999999888899999999999
Q ss_pred CCCCEEEEEe
Q 002519 895 TETGYVASAS 904 (913)
Q Consensus 895 pdg~~Lasgs 904 (913)
|...+++.|+
T Consensus 241 P~~d~VilgG 250 (327)
T KOG0643|consen 241 PLLDHVILGG 250 (327)
T ss_pred cccceEEecC
Confidence 9888777765
No 107
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=3.5e-24 Score=235.34 Aligned_cols=303 Identities=16% Similarity=0.237 Sum_probs=243.0
Q ss_pred CCCCCCcccccccCcc---ceeeeEeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCC--ceeeEeccCCCCeEEE
Q 002519 607 PRDAGGRGMDVSQGFS---FKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL--KSKTNLEEHSSLITDV 681 (913)
Q Consensus 607 ~~d~~~~~~~~~~~~~---~~~~~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~--~~~~~l~~h~~~V~~l 681 (913)
++|+.++.|.+..... -....+++.|.+.|.+++...+|+.|++++.|-+|++|+...+ -++.++..|.+.|.||
T Consensus 44 GRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcl 123 (735)
T KOG0308|consen 44 GRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCL 123 (735)
T ss_pred CCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhcccchheee
Confidence 4455555555544333 2346788999999999999999999999999999999999876 6788999999999999
Q ss_pred EE-CCCCCEEEEEeCCCeEEEEEcCCCCc---------eeEEec-cCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCC
Q 002519 682 RF-SPSMPRLATSSFDKTVRVWDADNPGY---------SLRTFM-GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN 750 (913)
Q Consensus 682 ~f-spdg~~Lasgs~Dg~V~Iwdl~~~~~---------~~~~~~-~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~ 750 (913)
++ .++...+|+|+.|+.|.|||++++.. ....+. ++...|++++-++.+ .+|++|+..+.|++||.++
T Consensus 124 a~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~-t~ivsGgtek~lr~wDprt 202 (735)
T KOG0308|consen 124 AYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTG-TIIVSGGTEKDLRLWDPRT 202 (735)
T ss_pred eecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcc-eEEEecCcccceEEecccc
Confidence 99 88888999999999999999996321 122233 889999999999987 5778999999999999999
Q ss_pred CeeeEEeeCCc---eEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEE
Q 002519 751 GSCTRVFKGGT---AQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVW 826 (913)
Q Consensus 751 ~~~~~~~~~~~---~~v~~s~~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vw 826 (913)
++.+..+.++. ..+..+.+|..++++++||+|++||+...+|+.++..|.+.|.++..+|+-.++++|+.| .|..=
T Consensus 203 ~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~T 282 (735)
T KOG0308|consen 203 CKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRT 282 (735)
T ss_pred ccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEec
Confidence 99888888765 556788999999999999999999999999999999999999999999999999999999 99999
Q ss_pred ECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEE-------------------------
Q 002519 827 TVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTL------------------------- 881 (913)
Q Consensus 827 dl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~------------------------- 881 (913)
|+++..+...+.+ ...+|..+..+....-+.+++.|+.|+-|.......+..
T Consensus 283 dl~n~~~~tlick---~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~~~l~~s~~~~~~~T~~~~~~~~~~~tp~~v 359 (735)
T KOG0308|consen 283 DLRNPAKSTLICK---EDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEPDIALSVSGDLDFFSTDSNNHSCDLTNTPDSV 359 (735)
T ss_pred ccCCchhheEeec---CCCchhhhhhccccCCceeeeccccceecCCccccccccCCCCCcccccCCCccccccCCCcee
Confidence 9987633333322 356677777776666678889999999997643221100
Q ss_pred cccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 002519 882 TAHEGLIAALAVSTETGYVASASHDKFVKLWK 913 (913)
Q Consensus 882 ~~h~~~V~~l~~spdg~~Lasgs~DG~I~IWd 913 (913)
......|...++-.|.++|+|=..+|.+.+||
T Consensus 360 i~Gg~ai~k~~mL~dkRhVlTkDa~gnv~lwD 391 (735)
T KOG0308|consen 360 IPGGAAIKKHAMLNDKRHVLTKDAKGNVALWD 391 (735)
T ss_pred ccCchhhhhhhhhcCcceEeeecCCCCEEEEE
Confidence 01111233344456778999999999999997
No 108
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=6.9e-23 Score=207.63 Aligned_cols=255 Identities=20% Similarity=0.337 Sum_probs=199.2
Q ss_pred ecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECC----CCceeeEeccCCCCeEEEEECC--CCCEEEEEeCCCeEEEEE
Q 002519 630 RASTSKVICCHFSSDGKLLATGGHDKKAVLWHTD----TLKSKTNLEEHSSLITDVRFSP--SMPRLATSSFDKTVRVWD 703 (913)
Q Consensus 630 ~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~----~~~~~~~l~~h~~~V~~l~fsp--dg~~Lasgs~Dg~V~Iwd 703 (913)
.+|.+-|.|+.|...|+++|+|+.|.+|+|||.+ +..+....+.|.+.|..|.|.+ -|..||++|.|++|+||.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 4788999999999999999999999999999964 4567778889999999999964 388999999999999997
Q ss_pred cCCC-----C---ceeEEeccCCCCeEEEEEcCCC-CeEEEEEeCCCcEEEEEcCCCeeeEEeeCCceEEEEecCCCEEE
Q 002519 704 ADNP-----G---YSLRTFMGHSASVMSLDFHPNK-DDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYL 774 (913)
Q Consensus 704 l~~~-----~---~~~~~~~~h~~~V~sl~fsp~~-~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~s~~~~~ll 774 (913)
-... + ....++......|++|+|.|.. +..+++++.||.||||+.-.-..+..
T Consensus 90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~------------------ 151 (361)
T KOG2445|consen 90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQ------------------ 151 (361)
T ss_pred ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCcccccc------------------
Confidence 6321 1 2345666788899999999963 33567899999999998764322211
Q ss_pred EEEcCCeEEEEECCCC--eEEEEecCCCCCeEEEEEcCC---CCEEEEEeCC------eEEEEECCCCC-CCceEEEeec
Q 002519 775 AAAAENVVSILDAETQ--ACRLSLQGHTKPIDSVCWDPS---GELLASVSED------SVRVWTVGSGS-EGECVHELSC 842 (913)
Q Consensus 775 ~~~~dg~I~i~D~~t~--~~~~~l~~h~~~V~sl~~spd---g~~l~s~s~d------~I~vwdl~~~~-~~~~i~~~~~ 842 (913)
|.+... ..+.....+.....|+.|++. ..+|+.|+++ .++||...... +...+.++..
T Consensus 152 ----------W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d 221 (361)
T KOG2445|consen 152 ----------WTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPD 221 (361)
T ss_pred ----------chhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCC
Confidence 111100 000011235566788999974 3488988887 79999987654 6677888889
Q ss_pred CCCceEEEEEeCC----CCEEEEEEcCCeEEEEECCCCc--------------------EE-EEcccCCCeEEEEEeCCC
Q 002519 843 NGNKFHSCVFHPT----YPSLLVIGCYQSLELWNMSENK--------------------TM-TLTAHEGLIAALAVSTET 897 (913)
Q Consensus 843 ~~~~i~~l~~sp~----g~~l~s~s~dg~I~iwd~~~~~--------------------~~-~~~~h~~~V~~l~~spdg 897 (913)
+..+|+.++|.|+ ...|++++.|| |+||.+.... .+ .+..|.+.|+.+.|+-.|
T Consensus 222 ~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtG 300 (361)
T KOG2445|consen 222 HTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTG 300 (361)
T ss_pred CCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeee
Confidence 9999999999995 45689999999 9999987411 11 466899999999999999
Q ss_pred CEEEEEeCCCcEEEeC
Q 002519 898 GYVASASHDKFVKLWK 913 (913)
Q Consensus 898 ~~Lasgs~DG~I~IWd 913 (913)
.+|++.|+||+||+|+
T Consensus 301 tiLsStGdDG~VRLWk 316 (361)
T KOG2445|consen 301 TILSSTGDDGCVRLWK 316 (361)
T ss_pred eEEeecCCCceeeehh
Confidence 9999999999999996
No 109
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=4.9e-23 Score=218.64 Aligned_cols=282 Identities=18% Similarity=0.272 Sum_probs=234.5
Q ss_pred cCCCCEEEEEEecCCCEEEEEeCCCcEEEEECC--CCceeeEeccCCCCeEEEEECCCCC-EEEEEeCCCeEEEEEcCCC
Q 002519 631 ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTD--TLKSKTNLEEHSSLITDVRFSPSMP-RLATSSFDKTVRVWDADNP 707 (913)
Q Consensus 631 ~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~--~~~~~~~l~~h~~~V~~l~fspdg~-~Lasgs~Dg~V~Iwdl~~~ 707 (913)
...+.|+||.|+|...+|++++.|++++||.++ ....+..+.-...+|.+.+|.|+|. .+++++....+++||+.+.
T Consensus 211 ps~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~a 290 (514)
T KOG2055|consen 211 PSHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETA 290 (514)
T ss_pred cCcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccc
Confidence 456889999999999999999999999999887 4456667777788999999999999 8999999999999999873
Q ss_pred Cc-eeEEeccCC-CCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEee--CCceEEEEecCCCEEEEEEcCCeEE
Q 002519 708 GY-SLRTFMGHS-ASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK--GGTAQMRFQPHLGRYLAAAAENVVS 783 (913)
Q Consensus 708 ~~-~~~~~~~h~-~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~--~~~~~v~~s~~~~~ll~~~~dg~I~ 783 (913)
.. .+....++. ..+..+..++++. +|+..+..|.|.+....++..+..++ +.+..++|+.++..+++++.+|.|+
T Consensus 291 k~~k~~~~~g~e~~~~e~FeVShd~~-fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~ 369 (514)
T KOG2055|consen 291 KVTKLKPPYGVEEKSMERFEVSHDSN-FIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVY 369 (514)
T ss_pred ccccccCCCCcccchhheeEecCCCC-eEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEE
Confidence 21 122233333 3566788899977 55688899999999999999887764 6678899999999999999999999
Q ss_pred EEECCCCeEEEEecCCCC-CeEEEEEcCCCCEEEEEeCC-eEEEEECCC---CCCCceEEEeecCCCceEEEEEeCCCCE
Q 002519 784 ILDAETQACRLSLQGHTK-PIDSVCWDPSGELLASVSED-SVRVWTVGS---GSEGECVHELSCNGNKFHSCVFHPTYPS 858 (913)
Q Consensus 784 i~D~~t~~~~~~l~~h~~-~V~sl~~spdg~~l~s~s~d-~I~vwdl~~---~~~~~~i~~~~~~~~~i~~l~~sp~g~~ 858 (913)
+||++...+++.+..... .-+++|.+.++.|||+|++. .|.|||..+ ...++++..+..-...|+++.|+++...
T Consensus 370 v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qi 449 (514)
T KOG2055|consen 370 VWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQI 449 (514)
T ss_pred EEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhh
Confidence 999999999998875322 34678888999999999998 999999754 3456777777777888999999999999
Q ss_pred EEEEEcC--CeEEEEECCCCcEEE-Ec---ccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 002519 859 LLVIGCY--QSLELWNMSENKTMT-LT---AHEGLIAALAVSTETGYVASASHDKFVKLWK 913 (913)
Q Consensus 859 l~s~s~d--g~I~iwd~~~~~~~~-~~---~h~~~V~~l~~spdg~~Lasgs~DG~I~IWd 913 (913)
|++++.. ..+++..+.+..+.. +. ..-+.|+|++|+|.+.+||.|..+|.|.+|+
T Consensus 450 LAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~k 510 (514)
T KOG2055|consen 450 LAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFK 510 (514)
T ss_pred hhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEe
Confidence 8888764 689999998887772 22 3346799999999999999999999999996
No 110
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.91 E-value=1.5e-23 Score=231.07 Aligned_cols=245 Identities=24% Similarity=0.334 Sum_probs=212.5
Q ss_pred eecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCC---CCEEEEEeCCCeEEEEEcC
Q 002519 629 VRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPS---MPRLATSSFDKTVRVWDAD 705 (913)
Q Consensus 629 l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspd---g~~Lasgs~Dg~V~Iwdl~ 705 (913)
.-+....|+|++.||+|.+||+|...|+++||++.+.+....++.|+..|.|+.|+.. .++||+++.|..|.|||+.
T Consensus 455 ~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~ 534 (1080)
T KOG1408|consen 455 TCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVK 534 (1080)
T ss_pred hcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecc
Confidence 4455678999999999999999999999999999999999999999999999999853 5689999999999999998
Q ss_pred CCCceeEEeccCCCCeEEEEEcCCC-CeEEEEEeCCCcEEEEEcCCCeeeEEe--------eCCceEEEEecCCCEEEEE
Q 002519 706 NPGYSLRTFMGHSASVMSLDFHPNK-DDLICSCDGDGEIRYWSINNGSCTRVF--------KGGTAQMRFQPHLGRYLAA 776 (913)
Q Consensus 706 ~~~~~~~~~~~h~~~V~sl~fsp~~-~~ll~sgs~Dg~I~iwdl~~~~~~~~~--------~~~~~~v~~s~~~~~ll~~ 776 (913)
.....+.++.+|...|++|.|...| ..-+++|+.|..|.+--.........| +.....+.+.|..++++++
T Consensus 535 rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~ 614 (1080)
T KOG1408|consen 535 RNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTV 614 (1080)
T ss_pred cccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEE
Confidence 8677888999999999999998765 334459999988865443322222222 2234568899999999999
Q ss_pred EcCCeEEEEECCCCeEEEEecC---CCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEeecCCCceEEEEE
Q 002519 777 AAENVVSILDAETQACRLSLQG---HTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVF 852 (913)
Q Consensus 777 ~~dg~I~i~D~~t~~~~~~l~~---h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~ 852 (913)
+.|..|+|||+.+++.++.|++ |++....+..+|.|.||++.+.| ++.+||+.++ +|+....+|...|+.+.|
T Consensus 615 cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sg---EcvA~m~GHsE~VTG~kF 691 (1080)
T KOG1408|consen 615 CQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSG---ECVAQMTGHSEAVTGVKF 691 (1080)
T ss_pred ecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccc---hhhhhhcCcchheeeeee
Confidence 9999999999999999999986 66778889999999999999999 9999999887 899999999999999999
Q ss_pred eCCCCEEEEEEcCCeEEEEECCCC
Q 002519 853 HPTYPSLLVIGCYQSLELWNMSEN 876 (913)
Q Consensus 853 sp~g~~l~s~s~dg~I~iwd~~~~ 876 (913)
.+|.++|++.+.||.|.||.+...
T Consensus 692 ~nDCkHlISvsgDgCIFvW~lp~~ 715 (1080)
T KOG1408|consen 692 LNDCKHLISVSGDGCIFVWKLPLT 715 (1080)
T ss_pred cccchhheeecCCceEEEEECchh
Confidence 999999999999999999998653
No 111
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=4.7e-23 Score=224.31 Aligned_cols=289 Identities=20% Similarity=0.258 Sum_probs=230.7
Q ss_pred CccceeeeEeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCC--EEEEEeCCC
Q 002519 620 GFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP--RLATSSFDK 697 (913)
Q Consensus 620 ~~~~~~~~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~--~Lasgs~Dg 697 (913)
.|.-.+...+++|++.|+||...|.|.+||+|+.||+|+||.+.++++++++.. .+.|.||+|+|.+. .||++-.+.
T Consensus 387 PFPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~-d~~I~~vaw~P~~~~~vLAvA~~~~ 465 (733)
T KOG0650|consen 387 PFPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQF-DSEIRSVAWNPLSDLCVLAVAVGEC 465 (733)
T ss_pred CCcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEee-cceeEEEEecCCCCceeEEEEecCc
Confidence 456677788999999999999999999999999999999999999999999874 45799999999765 333332222
Q ss_pred --------------------------------eEEEEEcCC---CCceeEEeccCCCCeEEEEEcCCCCeEEEEEeC--C
Q 002519 698 --------------------------------TVRVWDADN---PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDG--D 740 (913)
Q Consensus 698 --------------------------------~V~Iwdl~~---~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~--D 740 (913)
.|..|.-.. ...-++....|...|..|.||..|++|..++.. .
T Consensus 466 ~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~ 545 (733)
T KOG0650|consen 466 VLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGN 545 (733)
T ss_pred eEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCc
Confidence 222333221 011134455688999999999999877655543 3
Q ss_pred CcEEEEEcCCCeeeEEe---eCCceEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEE
Q 002519 741 GEIRYWSINNGSCTRVF---KGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLAS 817 (913)
Q Consensus 741 g~I~iwdl~~~~~~~~~---~~~~~~v~~s~~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s 817 (913)
..|.|+++...+....| ++.+..+.|+|...++++++ ...|+|||+...+.++.+.....+|.+++++|.|.-|+.
T Consensus 546 ~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaT-q~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~ 624 (733)
T KOG0650|consen 546 KSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVAT-QRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLIL 624 (733)
T ss_pred ceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEe-ccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEE
Confidence 56899999877655444 56778899999987777655 578999999998888888878889999999999999999
Q ss_pred EeCC-eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEC------CCCc-EE---EEcccCC
Q 002519 818 VSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNM------SENK-TM---TLTAHEG 886 (913)
Q Consensus 818 ~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~------~~~~-~~---~~~~h~~ 886 (913)
++.| .++.||+.-.. +....+..|...+++++||+...+|++|+.|+++.||.- ..+. ++ .+.+|..
T Consensus 625 gs~d~k~~WfDldlss--kPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~ 702 (733)
T KOG0650|consen 625 GSYDKKMCWFDLDLSS--KPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEK 702 (733)
T ss_pred ecCCCeeEEEEcccCc--chhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCcee
Confidence 9999 99999997543 566778888999999999999999999999999988842 2222 22 5677876
Q ss_pred C----eEEEEEeCCCCEEEEEeCCCcEEEe
Q 002519 887 L----IAALAVSTETGYVASASHDKFVKLW 912 (913)
Q Consensus 887 ~----V~~l~~spdg~~Lasgs~DG~I~IW 912 (913)
. |.++.|+|...+|++++.||+|++|
T Consensus 703 ~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 703 TNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred ecccceEeecccCCCceEEecCCCceEEee
Confidence 5 9999999999999999999999999
No 112
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.91 E-value=3.1e-22 Score=214.10 Aligned_cols=334 Identities=19% Similarity=0.252 Sum_probs=251.8
Q ss_pred eEEeCCCcchhhhcccccccCCccCceeeecccCCC---CCCCCCCcccccccCccceeeeEeecCC-CCEEEEEEecCC
Q 002519 570 QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDT---DPRDAGGRGMDVSQGFSFKEANSVRAST-SKVICCHFSSDG 645 (913)
Q Consensus 570 ~vWd~~~g~~~~~~~~~~~~g~~d~~v~~~~~~d~~---~~~d~~~~~~~~~~~~~~~~~~~l~~H~-~~V~~l~fspdg 645 (913)
.|||+..+....++...-+. -....|...+.. ..+.+...-|....+.-++....++.+. .-|.|++|.++|
T Consensus 183 SVWdWqk~~~~~~vk~sne~----v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~eng 258 (626)
T KOG2106|consen 183 SVWDWQKKAKLGPVKTSNEV----VFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENG 258 (626)
T ss_pred chhhchhhhccCcceeccce----EEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCC
Confidence 78999887665544321110 011122222221 1233445567777776777777777654 569999999998
Q ss_pred CEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCC----------ce-----
Q 002519 646 KLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG----------YS----- 710 (913)
Q Consensus 646 ~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~----------~~----- 710 (913)
-++||..+|.|.||+..+.+..+....|.+.|.+++.-.+|.+|- |+.|..|..||-+-.. ..
T Consensus 259 -dviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~ 336 (626)
T KOG2106|consen 259 -DVITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDNYRKLRETELPEQFGPIRTVA 336 (626)
T ss_pred -CEEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEee-cCccceEEeccccccccccccCchhcCCeeEEe
Confidence 467899999999999998888888889999999999999986555 9999999999842100 00
Q ss_pred ------------------------eEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeCCceEEEE
Q 002519 711 ------------------------LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRF 766 (913)
Q Consensus 711 ------------------------~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~ 766 (913)
.....+|.+..+.++.+|+.+ ++++|+.|+.+++|+-......+.+.....++.|
T Consensus 337 e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~-q~~T~gqdk~v~lW~~~k~~wt~~~~d~~~~~~f 415 (626)
T KOG2106|consen 337 EGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKN-QLLTCGQDKHVRLWNDHKLEWTKIIEDPAECADF 415 (626)
T ss_pred cCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChh-heeeccCcceEEEccCCceeEEEEecCceeEeec
Confidence 112236888999999999866 4559999999999994444445566778889999
Q ss_pred ecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEeecCCC
Q 002519 767 QPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGN 845 (913)
Q Consensus 767 s~~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~ 845 (913)
+|.+ .++++...|...++|.++...+..... ..++++++|+|+|.+||.|+.| .|+||.+..... +....-+++..
T Consensus 416 hpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~-~y~r~~k~~gs 492 (626)
T KOG2106|consen 416 HPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGR-KYSRVGKCSGS 492 (626)
T ss_pred cCcc-eEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCc-EEEEeeeecCc
Confidence 9998 999999999999999999666655554 8899999999999999999999 999999976533 33344445568
Q ss_pred ceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-------------------EEcccCCCeEEEEEeCCCCEEEEEeCC
Q 002519 846 KFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-------------------TLTAHEGLIAALAVSTETGYVASASHD 906 (913)
Q Consensus 846 ~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~-------------------~~~~h~~~V~~l~~spdg~~Lasgs~D 906 (913)
+|+.+.|++|+.+|.+-+.|-.|.+|.....+.+ ....+...|..++-+.+.+++|+|.+.
T Consensus 493 ~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~ 572 (626)
T KOG2106|consen 493 PITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDF 572 (626)
T ss_pred eeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccC
Confidence 9999999999999999999999999954433211 112355567777778888999999999
Q ss_pred CcEEEeC
Q 002519 907 KFVKLWK 913 (913)
Q Consensus 907 G~I~IWd 913 (913)
|+|+||+
T Consensus 573 g~v~lf~ 579 (626)
T KOG2106|consen 573 GKVHLFS 579 (626)
T ss_pred ceEEEEc
Confidence 9999985
No 113
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.91 E-value=4.2e-23 Score=219.83 Aligned_cols=247 Identities=20% Similarity=0.340 Sum_probs=204.7
Q ss_pred eecCCCCEEEEEEecC-CCEEEEEeCCCcEEEEECCCC----------ceeeEeccCCCCeEEEEECCCCC-EEEEEeCC
Q 002519 629 VRASTSKVICCHFSSD-GKLLATGGHDKKAVLWHTDTL----------KSKTNLEEHSSLITDVRFSPSMP-RLATSSFD 696 (913)
Q Consensus 629 l~~H~~~V~~l~fspd-g~~Lasgs~Dg~V~vwd~~~~----------~~~~~l~~h~~~V~~l~fspdg~-~Lasgs~D 696 (913)
.-.|.+.|+.+.+-|. ..++|+.+..+.|+|||..+. ....++.+|...-++|+|++... +|++++.|
T Consensus 120 ~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d 199 (422)
T KOG0264|consen 120 KINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDD 199 (422)
T ss_pred eccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCC
Confidence 3469999999999994 567888889999999998632 22237889999889999998654 89999999
Q ss_pred CeEEEEEcCCCCc------eeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCC--CeeeEE---eeCCceEEE
Q 002519 697 KTVRVWDADNPGY------SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN--GSCTRV---FKGGTAQMR 765 (913)
Q Consensus 697 g~V~Iwdl~~~~~------~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~--~~~~~~---~~~~~~~v~ 765 (913)
++|++||+..... ....+.+|...|..++|++....+|+++++|+.+.|||+++ .++.+. ..+.+.+++
T Consensus 200 ~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~ 279 (422)
T KOG0264|consen 200 HTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVA 279 (422)
T ss_pred CcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEE
Confidence 9999999976433 35678899999999999999999999999999999999995 333333 345788999
Q ss_pred EecCCCEEEEEEc-CCeEEEEECCCC-eEEEEecCCCCCeEEEEEcCCCC-EEEEEeCC-eEEEEECCCCC---------
Q 002519 766 FQPHLGRYLAAAA-ENVVSILDAETQ-ACRLSLQGHTKPIDSVCWDPSGE-LLASVSED-SVRVWTVGSGS--------- 832 (913)
Q Consensus 766 ~s~~~~~ll~~~~-dg~I~i~D~~t~-~~~~~l~~h~~~V~sl~~spdg~-~l~s~s~d-~I~vwdl~~~~--------- 832 (913)
|+|.+..++++++ |++|.+||+|+. ++++++.+|+..|..|.|+|... +|++++.| .+.|||+..-.
T Consensus 280 fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~ 359 (422)
T KOG0264|consen 280 FNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAE 359 (422)
T ss_pred eCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhc
Confidence 9999887666555 999999999986 68899999999999999999766 88888888 99999996532
Q ss_pred --CCceEEEeecCCCceEEEEEeCCCCEE-EEEEcCCeEEEEECCC
Q 002519 833 --EGECVHELSCNGNKFHSCVFHPTYPSL-LVIGCYQSLELWNMSE 875 (913)
Q Consensus 833 --~~~~i~~~~~~~~~i~~l~~sp~g~~l-~s~s~dg~I~iwd~~~ 875 (913)
..+.+....+|...|..+.|+|...++ ++.+.|+.+.||.+..
T Consensus 360 dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 360 DGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred cCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 234567778899999999999998864 5567788999999864
No 114
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.91 E-value=4.5e-23 Score=219.78 Aligned_cols=260 Identities=17% Similarity=0.280 Sum_probs=217.0
Q ss_pred CCCCCCcccccccCccceeeeEee--cCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCC--ceeeEeccCCCCeEEEE
Q 002519 607 PRDAGGRGMDVSQGFSFKEANSVR--ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL--KSKTNLEEHSSLITDVR 682 (913)
Q Consensus 607 ~~d~~~~~~~~~~~~~~~~~~~l~--~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~--~~~~~l~~h~~~V~~l~ 682 (913)
++.+.+++|++...-.-..+..+. .....|++|.+.+||+.|++|++-.+|.|||+... +....+....-.+.+++
T Consensus 437 gGkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa 516 (705)
T KOG0639|consen 437 GGKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALA 516 (705)
T ss_pred cCCCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhh
Confidence 455677888887654444444443 24578999999999999999999999999999843 44445555556788899
Q ss_pred ECCCCCEEEEEeCCCeEEEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeE--EeeCC
Q 002519 683 FSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR--VFKGG 760 (913)
Q Consensus 683 fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~--~~~~~ 760 (913)
.+||.+..++|+.||.|+|||+.+ ...++.|.+|.+.+.||.+++||..|. +|+-|++||.||+++++.+. .|...
T Consensus 517 ~spDakvcFsccsdGnI~vwDLhn-q~~VrqfqGhtDGascIdis~dGtklW-TGGlDntvRcWDlregrqlqqhdF~SQ 594 (705)
T KOG0639|consen 517 ISPDAKVCFSCCSDGNIAVWDLHN-QTLVRQFQGHTDGASCIDISKDGTKLW-TGGLDNTVRCWDLREGRQLQQHDFSSQ 594 (705)
T ss_pred cCCccceeeeeccCCcEEEEEccc-ceeeecccCCCCCceeEEecCCCceee-cCCCccceeehhhhhhhhhhhhhhhhh
Confidence 999999999999999999999998 788999999999999999999988765 99999999999999987654 46677
Q ss_pred ceEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEE
Q 002519 761 TAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHE 839 (913)
Q Consensus 761 ~~~v~~s~~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~ 839 (913)
+.++.++|.+.+++++-..+.|.|...... ..+.+.-|+..|.++.|.+.|+++++.+.| .+..|..--+ ..+..
T Consensus 595 IfSLg~cP~~dWlavGMens~vevlh~skp-~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyG---asiFq 670 (705)
T KOG0639|consen 595 IFSLGYCPTGDWLAVGMENSNVEVLHTSKP-EKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYG---ASIFQ 670 (705)
T ss_pred heecccCCCccceeeecccCcEEEEecCCc-cceeecccccEEEEEEecccCceeeecCchhhhhhccCccc---cceee
Confidence 888999999999999999999999887654 344566699999999999999999999999 8999998766 33433
Q ss_pred eecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 002519 840 LSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNM 873 (913)
Q Consensus 840 ~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~ 873 (913)
.+. ...|.+|.++.|.++|++|+.|....||.+
T Consensus 671 skE-~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 671 SKE-SSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred ccc-cCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 332 678999999999999999999998888865
No 115
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.91 E-value=1.5e-22 Score=213.19 Aligned_cols=249 Identities=19% Similarity=0.250 Sum_probs=215.7
Q ss_pred cceeeeEeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEE
Q 002519 622 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRV 701 (913)
Q Consensus 622 ~~~~~~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~I 701 (913)
.-..+..++||...|+.+.|+++...+++++.|..|+||..........+..|..+|+.+..+|.|.||++++.||+..+
T Consensus 250 s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~F 329 (506)
T KOG0289|consen 250 SNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAF 329 (506)
T ss_pred hhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceEEE
Confidence 34566789999999999999999999999999999999999988888889999999999999999999999999999999
Q ss_pred EEcCCCCceeEEecc--CCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeC---CceEEEEecCCCEEEEE
Q 002519 702 WDADNPGYSLRTFMG--HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAA 776 (913)
Q Consensus 702 wdl~~~~~~~~~~~~--h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~s~~~~~ll~~ 776 (913)
.|+++ +..+..... ..-.++++.|||||- +|.+|..||.|+|||+.+...+..|.+ .+..+.|+.+|-+++++
T Consensus 330 sd~~~-g~~lt~vs~~~s~v~~ts~~fHpDgL-ifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~ 407 (506)
T KOG0289|consen 330 SDISS-GSQLTVVSDETSDVEYTSAAFHPDGL-IFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATA 407 (506)
T ss_pred EEccC-CcEEEEEeeccccceeEEeeEcCCce-EEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEE
Confidence 99998 544444332 334689999999965 777999999999999999998888876 46778999998899999
Q ss_pred EcCCeEEEEECCCCeEEEEecCC-CCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEeecCCCceEEEEEeC
Q 002519 777 AAENVVSILDAETQACRLSLQGH-TKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHP 854 (913)
Q Consensus 777 ~~dg~I~i~D~~t~~~~~~l~~h-~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp 854 (913)
+.|+.|++||+|..+...++... ...|.+++|+..|.+|++++.+ .|++++-.+ ....++..+..|.+..+++.|..
T Consensus 408 add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~-k~W~~~~~~~~~sg~st~v~Fg~ 486 (506)
T KOG0289|consen 408 ADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKT-KSWTEIKELADHSGLSTGVRFGE 486 (506)
T ss_pred ecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEeccc-ccceeeehhhhcccccceeeecc
Confidence 99999999999998877777643 3479999999999999999888 788777544 35678888888888899999999
Q ss_pred CCCEEEEEEcCCeEEEEEC
Q 002519 855 TYPSLLVIGCYQSLELWNM 873 (913)
Q Consensus 855 ~g~~l~s~s~dg~I~iwd~ 873 (913)
...++++++.|..++|+.+
T Consensus 487 ~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 487 HAQYLASTSMDAILRLYAL 505 (506)
T ss_pred cceEEeeccchhheEEeec
Confidence 9999999999999888864
No 116
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.91 E-value=1.5e-22 Score=215.21 Aligned_cols=282 Identities=23% Similarity=0.347 Sum_probs=219.1
Q ss_pred CcceEEEEcCCCccccC---CCCeEEeCCCcchhhhcccccccCCccCceeeecccCCCCCCCCCCcccccccCccceee
Q 002519 550 SKPLMMFGTDGAGTLTS---PSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEA 626 (913)
Q Consensus 550 ~~~~~~~s~dg~~~~~~---~~~~vWd~~~g~~~~~~~~~~~~g~~d~~v~~~~~~d~~~~~d~~~~~~~~~~~~~~~~~ 626 (913)
+.-.+.+++|+.+.+.. +.+.=|++.+|+....+- ... .+ +. ..+..+++-
T Consensus 144 s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~---~~~----ev---~k----------------~~~~~~k~~ 197 (479)
T KOG0299|consen 144 SVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYII---ERD----EV---LK----------------SHGNPLKES 197 (479)
T ss_pred cceEEEeeccccceeecCCCcceeeeehhcCccccccc---ccc----hh---hh----------------hccCCCCcc
Confidence 34467888898887773 344558888876432111 000 00 00 011122222
Q ss_pred eEeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCC
Q 002519 627 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN 706 (913)
Q Consensus 627 ~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~ 706 (913)
. ++|...|.|++.|+||+|||+|+.|..|.||+.++.+.+..+++|.+.|.+++|-.....|+++|.|++|++|+++.
T Consensus 198 r--~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~ 275 (479)
T KOG0299|consen 198 R--KGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQ 275 (479)
T ss_pred c--ccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhH
Confidence 2 48999999999999999999999999999999999999999999999999999999889999999999999999987
Q ss_pred CCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeC---CceEEEEecCCCEEEEEEcCCeEE
Q 002519 707 PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAAENVVS 783 (913)
Q Consensus 707 ~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~s~~~~~ll~~~~dg~I~ 783 (913)
...+.++.+|.+.|.+|....- .+.+.+|+.|+++++|++..... ..|.+ .+.+++|.. ...+++|+.+|.|.
T Consensus 276 -~s~vetlyGHqd~v~~IdaL~r-eR~vtVGgrDrT~rlwKi~eesq-lifrg~~~sidcv~~In-~~HfvsGSdnG~Ia 351 (479)
T KOG0299|consen 276 -LSYVETLYGHQDGVLGIDALSR-ERCVTVGGRDRTVRLWKIPEESQ-LIFRGGEGSIDCVAFIN-DEHFVSGSDNGSIA 351 (479)
T ss_pred -hHHHHHHhCCccceeeechhcc-cceEEeccccceeEEEeccccce-eeeeCCCCCeeeEEEec-ccceeeccCCceEE
Confidence 6678889999999999998765 44777788999999999954432 33333 345566554 47899999999999
Q ss_pred EEECCCCeEEEEecC-C-----------CCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCC-CCceEEEeecCCCceEE
Q 002519 784 ILDAETQACRLSLQG-H-----------TKPIDSVCWDPSGELLASVSED-SVRVWTVGSGS-EGECVHELSCNGNKFHS 849 (913)
Q Consensus 784 i~D~~t~~~~~~l~~-h-----------~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~-~~~~i~~~~~~~~~i~~ 849 (913)
+|++-+.+++++... | ..+|++++..|..+++++|+.+ .|++|-+..+- ....+..+. -.+.|++
T Consensus 352 LWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNs 430 (479)
T KOG0299|consen 352 LWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNS 430 (479)
T ss_pred EeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc-cccEEEE
Confidence 999999998887642 2 1289999999999999999999 99999998762 345555555 4678999
Q ss_pred EEEeCCCCEEEEEEc
Q 002519 850 CVFHPTYPSLLVIGC 864 (913)
Q Consensus 850 l~~sp~g~~l~s~s~ 864 (913)
++|+++|++|++|..
T Consensus 431 l~f~~sgk~ivagiG 445 (479)
T KOG0299|consen 431 LAFSNSGKRIVAGIG 445 (479)
T ss_pred EEEccCCCEEEEecc
Confidence 999999997777744
No 117
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=2.6e-23 Score=204.44 Aligned_cols=241 Identities=24% Similarity=0.424 Sum_probs=200.4
Q ss_pred ccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCC--ceeEEeccCCCCeEEEEE-cCCCCeEEEEEeCCCcEEEEEc
Q 002519 672 EEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG--YSLRTFMGHSASVMSLDF-HPNKDDLICSCDGDGEIRYWSI 748 (913)
Q Consensus 672 ~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~--~~~~~~~~h~~~V~sl~f-sp~~~~ll~sgs~Dg~I~iwdl 748 (913)
..|++.|.++...--|++|||||.|++|+|+.+++.+ ..+.++.+|.++|+.++| +|.-..+|++|+.||.|.||.-
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke 87 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKE 87 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEec
Confidence 4688889888888889999999999999999999866 578899999999999999 5666679999999999999999
Q ss_pred CCCeeeEE-----eeCCceEEEEecCC--CEEEEEEcCCeEEEEECCCC---eEEEEecCCCCCeEEEEEcCC---C---
Q 002519 749 NNGSCTRV-----FKGGTAQMRFQPHL--GRYLAAAAENVVSILDAETQ---ACRLSLQGHTKPIDSVCWDPS---G--- 812 (913)
Q Consensus 749 ~~~~~~~~-----~~~~~~~v~~s~~~--~~ll~~~~dg~I~i~D~~t~---~~~~~l~~h~~~V~sl~~spd---g--- 812 (913)
.++...+. +...+++++|.|.+ -.|+++++||.|.|++.+.. ........|.-.|++++|.|. |
T Consensus 88 ~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~ 167 (299)
T KOG1332|consen 88 ENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLV 167 (299)
T ss_pred CCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCcccc
Confidence 98854333 34567888888865 45677788999999987764 334455679999999999995 4
Q ss_pred --------CEEEEEeCC-eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCC----CEEEEEEcCCeEEEEECCCC---
Q 002519 813 --------ELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTY----PSLLVIGCYQSLELWNMSEN--- 876 (913)
Q Consensus 813 --------~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g----~~l~s~s~dg~I~iwd~~~~--- 876 (913)
+.|++|+.| .|+||+...+ ....-..+..|...|+.++|.|.- .+|++++.||+|.||..+..
T Consensus 168 ~~~~~~~~krlvSgGcDn~VkiW~~~~~-~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~ 246 (299)
T KOG1332|consen 168 DQGPAAKVKRLVSGGCDNLVKIWKFDSD-SWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEP 246 (299)
T ss_pred ccCcccccceeeccCCccceeeeecCCc-chhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCc
Confidence 569999999 9999999876 444555688999999999999965 47999999999999987632
Q ss_pred -cEEEEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 002519 877 -KTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 913 (913)
Q Consensus 877 -~~~~~~~h~~~V~~l~~spdg~~Lasgs~DG~I~IWd 913 (913)
+...+......++.+.|+..|.+|+.++.|..|.+|+
T Consensus 247 wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwk 284 (299)
T KOG1332|consen 247 WKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWK 284 (299)
T ss_pred ccccccccCCcceEEEEEeccccEEEEecCCcEEEEEE
Confidence 1224455778899999999999999999999999996
No 118
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.90 E-value=3.3e-21 Score=217.45 Aligned_cols=358 Identities=16% Similarity=0.222 Sum_probs=249.8
Q ss_pred CCcceEEEEcCCCccccCCCCeEEeCCCcchhhhcccccccCCccCceeeecccCC---CCCCCCCCcccccccC-cc-c
Q 002519 549 TSKPLMMFGTDGAGTLTSPSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD---TDPRDAGGRGMDVSQG-FS-F 623 (913)
Q Consensus 549 ~~~~~~~~s~dg~~~~~~~~~~vWd~~~g~~~~~~~~~~~~g~~d~~v~~~~~~d~---~~~~d~~~~~~~~~~~-~~-~ 623 (913)
..+.+.+...+.++++++.-..|+-.+.|+...+....-. .+|...+.-.+ ....+....+|..... .. .
T Consensus 75 lp~~I~alas~~~~vy~A~g~~i~~~~rgk~i~~~~~~~~-----a~v~~l~~fGe~lia~d~~~~l~vw~~s~~~~e~~ 149 (910)
T KOG1539|consen 75 LPDKITALASDKDYVYVASGNKIYAYARGKHIRHTTLLHG-----AKVHLLLPFGEHLIAVDISNILFVWKTSSIQEELY 149 (910)
T ss_pred CCCceEEEEecCceEEEecCcEEEEEEccceEEEEecccc-----ceEEEEeeecceEEEEEccCcEEEEEecccccccc
Confidence 3455677788888887766666666655543332221100 12222211111 1112223344444332 11 1
Q ss_pred eeeeEeecCCCCEEEEEEecC--CCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEE
Q 002519 624 KEANSVRASTSKVICCHFSSD--GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRV 701 (913)
Q Consensus 624 ~~~~~l~~H~~~V~~l~fspd--g~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~I 701 (913)
.....++...+.|++|. +|+ =+.++.|+.+|.+.||++.+++.+.++.++...|+++.=+|--..++.|..+|+|.|
T Consensus 150 l~~~~~~~~~~~Ital~-HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~Vii 228 (910)
T KOG1539|consen 150 LQSTFLKVEGDFITALL-HPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVII 228 (910)
T ss_pred ccceeeeccCCceeeEe-cchhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEE
Confidence 11222333333377764 443 357899999999999999999999999999999999999999899999999999999
Q ss_pred EEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEee----CCceEEEEecCCCEEEEEE
Q 002519 702 WDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK----GGTAQMRFQPHLGRYLAAA 777 (913)
Q Consensus 702 wdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~----~~~~~v~~s~~~~~ll~~~ 777 (913)
++++. ++.+.+|+...+.|++++|..||..++++|+..|.+.+||++..+.+.... +.+....|.+....+++++
T Consensus 229 fNlK~-dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~ 307 (910)
T KOG1539|consen 229 FNLKF-DKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAG 307 (910)
T ss_pred EEccc-CcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeecc
Confidence 99998 778888885569999999999999999999999999999999887765544 3334455555555555555
Q ss_pred cCCeEEEE--ECCCC--eEEE-----------------------------------------------------------
Q 002519 778 AENVVSIL--DAETQ--ACRL----------------------------------------------------------- 794 (913)
Q Consensus 778 ~dg~I~i~--D~~t~--~~~~----------------------------------------------------------- 794 (913)
.|+.+++| |...+ +.++
T Consensus 308 ~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~ 387 (910)
T KOG1539|consen 308 ADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNV 387 (910)
T ss_pred CCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccc
Confidence 55544443 31000 0000
Q ss_pred --------------------------------------------------Eec-----CCCCCeEEEEEcCCCCEEEEEe
Q 002519 795 --------------------------------------------------SLQ-----GHTKPIDSVCWDPSGELLASVS 819 (913)
Q Consensus 795 --------------------------------------------------~l~-----~h~~~V~sl~~spdg~~l~s~s 819 (913)
.+. .....+++++.++.|++.+.|+
T Consensus 388 ~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~ 467 (910)
T KOG1539|consen 388 FSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGY 467 (910)
T ss_pred cchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEec
Confidence 000 0113467788888888888877
Q ss_pred CC-eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-------------------
Q 002519 820 ED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM------------------- 879 (913)
Q Consensus 820 ~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~------------------- 879 (913)
.. .|.+|++.+|-.......-..|..+|+.++..--++.+++++.+|.+++||+.++..+
T Consensus 468 S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~ 547 (910)
T KOG1539|consen 468 SKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSD 547 (910)
T ss_pred cCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhh
Confidence 76 8999999877333333223578899999999999999999999999999998765311
Q ss_pred -----------------------EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 002519 880 -----------------------TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 913 (913)
Q Consensus 880 -----------------------~~~~h~~~V~~l~~spdg~~Lasgs~DG~I~IWd 913 (913)
.+.+|.+.|++++|||||++|++++.|++|++||
T Consensus 548 l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wD 604 (910)
T KOG1539|consen 548 LLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWD 604 (910)
T ss_pred hhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEe
Confidence 2345999999999999999999999999999998
No 119
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.90 E-value=1.6e-23 Score=216.14 Aligned_cols=260 Identities=17% Similarity=0.255 Sum_probs=215.3
Q ss_pred CCCCCCCcccccccCccceeeeEeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECC
Q 002519 606 DPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSP 685 (913)
Q Consensus 606 ~~~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fsp 685 (913)
+..|+.+++|++... .+...++.|.+.|..|++.. ..+++++.|++|+.|.++. ..++++.+ ...+..|.-+.
T Consensus 85 Gs~DG~VkiWnlsqR---~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~-~p~~tilg-~s~~~gIdh~~ 157 (433)
T KOG0268|consen 85 GSCDGEVKIWNLSQR---ECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDG-PPLHTILG-KSVYLGIDHHR 157 (433)
T ss_pred cccCceEEEEehhhh---hhhheeecccCceeeEEecc--cceEEecCCcceeeeeccC-Ccceeeec-ccccccccccc
Confidence 344555566665543 56788999999999999987 6888999999999999875 45666654 44577888777
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEe--eCCceE
Q 002519 686 SMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF--KGGTAQ 763 (913)
Q Consensus 686 dg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~--~~~~~~ 763 (913)
.+..++||+.+ |.|||... ..++..+.-..+.|.++.|+|....+|++|+.|+.|.+||++....++.. .-..+.
T Consensus 158 ~~~~FaTcGe~--i~IWD~~R-~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~ 234 (433)
T KOG0268|consen 158 KNSVFATCGEQ--IDIWDEQR-DNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTNT 234 (433)
T ss_pred ccccccccCce--eeeccccc-CCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeeccccc
Confidence 78899999876 99999986 67788888888899999999999999999999999999999999887654 446788
Q ss_pred EEEecCCCEEEEEEcCCeEEEEECCCC-eEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEee
Q 002519 764 MRFQPHLGRYLAAAAENVVSILDAETQ-ACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELS 841 (913)
Q Consensus 764 v~~s~~~~~ll~~~~dg~I~i~D~~t~-~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~ 841 (913)
++|+|..-.|+++..|..++.||.+.. .++....+|...|.++.|+|.|.-|++|+.| +|+||.++.+......++-
T Consensus 235 IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtk- 313 (433)
T KOG0268|consen 235 ICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTK- 313 (433)
T ss_pred eecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHh-
Confidence 999997777888888999999999986 6788889999999999999999999999999 9999999876433322221
Q ss_pred cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCc
Q 002519 842 CNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK 877 (913)
Q Consensus 842 ~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~ 877 (913)
.-..|.++.|+-|..+|++|+.|+.|++|...-.+
T Consensus 314 -RMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Ase 348 (433)
T KOG0268|consen 314 -RMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASE 348 (433)
T ss_pred -hhheeeEEEEeccccEEEecCCCcceeeeecchhh
Confidence 13458899999999999999999999999875443
No 120
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.90 E-value=1.5e-21 Score=208.86 Aligned_cols=337 Identities=18% Similarity=0.283 Sum_probs=250.4
Q ss_pred CCCCeEEeCCCcchhhhcccccccCCccCcee--eecccCCCCCCCCCCcccccccCccceeeeEeecCCCCEEEEEEec
Q 002519 566 SPSNQLWDDKDLELRADMDRLVEDGSLDDNVE--SFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSS 643 (913)
Q Consensus 566 ~~~~~vWd~~~g~~~~~~~~~~~~g~~d~~v~--~~~~~d~~~~~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fsp 643 (913)
-+...+|+++.+-+.+..+.+..... +.|. .|+.+++...+|+.+.+..+.++ ..+..+....|.+.|.|++.-.
T Consensus 221 k~H~~Fw~~~~~~l~k~~~~fek~ek--k~Vl~v~F~engdviTgDS~G~i~Iw~~~-~~~~~k~~~aH~ggv~~L~~lr 297 (626)
T KOG2106|consen 221 KGHLYFWTLRGGSLVKRQGIFEKREK--KFVLCVTFLENGDVITGDSGGNILIWSKG-TNRISKQVHAHDGGVFSLCMLR 297 (626)
T ss_pred CceEEEEEccCCceEEEeeccccccc--eEEEEEEEcCCCCEEeecCCceEEEEeCC-CceEEeEeeecCCceEEEEEec
Confidence 34568899999888776665543332 3333 34566666666666655544444 4455555569999999999999
Q ss_pred CCCEEEEEeCCCcEEEEECCCCcee-----------------------------------------eEeccCCCCeEEEE
Q 002519 644 DGKLLATGGHDKKAVLWHTDTLKSK-----------------------------------------TNLEEHSSLITDVR 682 (913)
Q Consensus 644 dg~~Lasgs~Dg~V~vwd~~~~~~~-----------------------------------------~~l~~h~~~V~~l~ 682 (913)
+|++|- |+.|.+|..||-. .+.+ .+..+|....+.++
T Consensus 298 ~GtllS-GgKDRki~~Wd~~-y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla 375 (626)
T KOG2106|consen 298 DGTLLS-GGKDRKIILWDDN-YRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLA 375 (626)
T ss_pred CccEee-cCccceEEecccc-ccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEE
Confidence 997666 9999999999832 1100 01225888899999
Q ss_pred ECCCCCEEEEEeCCCeEEEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEee--CC
Q 002519 683 FSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK--GG 760 (913)
Q Consensus 683 fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~--~~ 760 (913)
.+|+...|+|++.|+.|+||+ + .+.+.+. -...++.|+.|+|.| .++.|...|...+.|.++...+.... ..
T Consensus 376 ~hps~~q~~T~gqdk~v~lW~-~--~k~~wt~-~~~d~~~~~~fhpsg--~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ 449 (626)
T KOG2106|consen 376 THPSKNQLLTCGQDKHVRLWN-D--HKLEWTK-IIEDPAECADFHPSG--VVAVGTATGRWFVLDTETQDLVTIHTDNEQ 449 (626)
T ss_pred cCCChhheeeccCcceEEEcc-C--CceeEEE-EecCceeEeeccCcc--eEEEeeccceEEEEecccceeEEEEecCCc
Confidence 999999999999999999999 2 3333222 245788999999998 67799999999999999976665443 46
Q ss_pred ceEEEEecCCCEEEEEEcCCeEEEEECCCCeE--EEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceE
Q 002519 761 TAQMRFQPHLGRYLAAAAENVVSILDAETQAC--RLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECV 837 (913)
Q Consensus 761 ~~~v~~s~~~~~ll~~~~dg~I~i~D~~t~~~--~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i 837 (913)
.+.++|+|++..+++++.|+.|+||-+..... .+.-+.+..+|+.+.|++|+++|.+.+.| .|..|..........+
T Consensus 450 ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~ 529 (626)
T KOG2106|consen 450 LSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSV 529 (626)
T ss_pred eEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEccccCccccee
Confidence 68899999999999999999999998765432 22223355899999999999999999999 9999954332222222
Q ss_pred EEe---------------ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcE----EEEcccCCCeEEEEEeCCCC
Q 002519 838 HEL---------------SCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKT----MTLTAHEGLIAALAVSTETG 898 (913)
Q Consensus 838 ~~~---------------~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~----~~~~~h~~~V~~l~~spdg~ 898 (913)
+.+ ..+...+..++-+...+.++++...|+|++|...-... .++.+|.+.|.+++|.-+..
T Consensus 530 kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~ 609 (626)
T KOG2106|consen 530 KDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDS 609 (626)
T ss_pred cceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEEeeCCc
Confidence 111 12334455666677788889999999999998754432 37889999999999998888
Q ss_pred EEEEEeCCCcEEEeC
Q 002519 899 YVASASHDKFVKLWK 913 (913)
Q Consensus 899 ~Lasgs~DG~I~IWd 913 (913)
++++.+.|.+|..|+
T Consensus 610 ~li~tg~D~Si~qW~ 624 (626)
T KOG2106|consen 610 HLISTGKDTSIMQWR 624 (626)
T ss_pred eEEecCCCceEEEEE
Confidence 888888999999996
No 121
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.90 E-value=1.2e-22 Score=217.82 Aligned_cols=235 Identities=17% Similarity=0.269 Sum_probs=190.8
Q ss_pred CCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeE------------eccCCCCeEEEEECCCCC-EEEEEeCCCeE
Q 002519 633 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTN------------LEEHSSLITDVRFSPSMP-RLATSSFDKTV 699 (913)
Q Consensus 633 ~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~------------l~~h~~~V~~l~fspdg~-~Lasgs~Dg~V 699 (913)
...|.++.|++.|..|++.+....++|+|-+....... .++|...++|.+|+|+.+ .++|++.||++
T Consensus 214 ~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~Dgtl 293 (641)
T KOG0772|consen 214 THQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTL 293 (641)
T ss_pred ccccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcE
Confidence 34699999999999999888889999999875554433 357999999999999865 78999999999
Q ss_pred EEEEcCCCCceeEEec-----cCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEe------eC--CceEEEE
Q 002519 700 RVWDADNPGYSLRTFM-----GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF------KG--GTAQMRF 766 (913)
Q Consensus 700 ~Iwdl~~~~~~~~~~~-----~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~------~~--~~~~v~~ 766 (913)
||||+++....+..++ +..-.++.++|+++++. |++|+.||.|.+|+.........+ .. .++++.|
T Consensus 294 RiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~-iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~F 372 (641)
T KOG0772|consen 294 RIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKL-IAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISF 372 (641)
T ss_pred EEEecCCchhheeEEeeccCCCcccCceeeecCCCcch-hhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEe
Confidence 9999998655444444 34567899999999885 779999999999998654322211 12 5789999
Q ss_pred ecCCCEEEEEEcCCeEEEEECCCC-eEEEEecCC--CCCeEEEEEcCCCCEEEEEeC-------CeEEEEECCCCCCCce
Q 002519 767 QPHLGRYLAAAAENVVSILDAETQ-ACRLSLQGH--TKPIDSVCWDPSGELLASVSE-------DSVRVWTVGSGSEGEC 836 (913)
Q Consensus 767 s~~~~~ll~~~~dg~I~i~D~~t~-~~~~~l~~h--~~~V~sl~~spdg~~l~s~s~-------d~I~vwdl~~~~~~~~ 836 (913)
+.++++|++-+.|+++++||++.. +++.+..+- ..+-+.+||+|+.++|++|.. +.+.+||..+. ..
T Consensus 373 S~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~---d~ 449 (641)
T KOG0772|consen 373 SYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTL---DT 449 (641)
T ss_pred ccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccce---ee
Confidence 999999999999999999999986 566655543 335678999999999999863 16899998765 66
Q ss_pred EEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEE
Q 002519 837 VHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELW 871 (913)
Q Consensus 837 i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iw 871 (913)
+..+......|..|.|||.-+.|++++.||.++||
T Consensus 450 v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vy 484 (641)
T KOG0772|consen 450 VYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVY 484 (641)
T ss_pred EEEecCCCceEEEEeecchhhheeeecCCCceEEE
Confidence 77777778889999999999999999999999887
No 122
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.90 E-value=1.1e-21 Score=197.47 Aligned_cols=281 Identities=22% Similarity=0.352 Sum_probs=217.5
Q ss_pred EeecCCCCEEEEEEec-CCCEEEEEeCCCcEEEEECCCCc----------eee-----EeccCCCCeEEEEECCC-CCEE
Q 002519 628 SVRASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTDTLK----------SKT-----NLEEHSSLITDVRFSPS-MPRL 690 (913)
Q Consensus 628 ~l~~H~~~V~~l~fsp-dg~~Lasgs~Dg~V~vwd~~~~~----------~~~-----~l~~h~~~V~~l~fspd-g~~L 690 (913)
..+.|.+.|+++.+.+ .|+++++|+.||.|.|||+++.. .+. .-.+|...|.++.|.|- ...+
T Consensus 38 ~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmF 117 (397)
T KOG4283|consen 38 FVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMF 117 (397)
T ss_pred eeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCcee
Confidence 4567999999999988 78999999999999999997432 011 11358889999999985 4578
Q ss_pred EEEeCCCeEEEEEcCCCCceeEEeccCCCCeEEEEEcCC--CCeEEEEEeCCCcEEEEEcCCCeeeEEeeC---CceEEE
Q 002519 691 ATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPN--KDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMR 765 (913)
Q Consensus 691 asgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~--~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~---~~~~v~ 765 (913)
.+++.|.+++|||..+ ......|+ ..+.|++-+++|- ...||++|..|-.|++.|+.+|.+...+.+ ++..+.
T Consensus 118 tssSFDhtlKVWDtnT-lQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~ 195 (397)
T KOG4283|consen 118 TSSSFDHTLKVWDTNT-LQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVE 195 (397)
T ss_pred ecccccceEEEeeccc-ceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEE
Confidence 8889999999999998 44445554 5677888888874 345888999999999999999999988876 467889
Q ss_pred EecCCCEEEEE-EcCCeEEEEECCCC-eEEEEec--------------CCCCCeEEEEEcCCCCEEEEEeCC-eEEEEEC
Q 002519 766 FQPHLGRYLAA-AAENVVSILDAETQ-ACRLSLQ--------------GHTKPIDSVCWDPSGELLASVSED-SVRVWTV 828 (913)
Q Consensus 766 ~s~~~~~ll~~-~~dg~I~i~D~~t~-~~~~~l~--------------~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl 828 (913)
|+|...++++. +.||.|++||++.- .+...+. .|.+.|++++|..++.++++++.| .+++|+.
T Consensus 196 Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~ 275 (397)
T KOG4283|consen 196 WSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNM 275 (397)
T ss_pred eccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeec
Confidence 99999887665 55999999999865 3443332 466779999999999999999988 9999999
Q ss_pred CCCCCCceEEEeecCCC----ceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEE
Q 002519 829 GSGSEGECVHELSCNGN----KFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASA 903 (913)
Q Consensus 829 ~~~~~~~~i~~~~~~~~----~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~Lasg 903 (913)
.++.....-..-..+.. .+. +. +-+...++..-.++.+.++++-++..+ .+..|...|.|.++-++-..+.+|
T Consensus 276 ~~G~ntl~~~g~~~~n~~~~~~~~-~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg 353 (397)
T KOG4283|consen 276 ESGRNTLREFGPIIHNQTTSFAVH-IQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQCFTG 353 (397)
T ss_pred ccCcccccccccccccccccceEE-Ee-ecccceEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecCchhhhhcc
Confidence 88753221111111111 122 22 344455666666789999999988877 677899999999999998889999
Q ss_pred eCCCcEEEe
Q 002519 904 SHDKFVKLW 912 (913)
Q Consensus 904 s~DG~I~IW 912 (913)
..|+.|..|
T Consensus 354 ~~d~ni~~w 362 (397)
T KOG4283|consen 354 DMNGNIYMW 362 (397)
T ss_pred ccCCccccc
Confidence 999999988
No 123
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=2.7e-22 Score=213.79 Aligned_cols=227 Identities=21% Similarity=0.269 Sum_probs=195.5
Q ss_pred CCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCC-----
Q 002519 632 STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN----- 706 (913)
Q Consensus 632 H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~----- 706 (913)
-.+.|.|++-+|+|.+|+.|+..|.|++|.+.+|+.+..+.+|-..|+||.|+.|+.+|+|||.||.|.+|++..
T Consensus 80 ~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~ 159 (476)
T KOG0646|consen 80 LPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSAD 159 (476)
T ss_pred cccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccc
Confidence 357899999999999999999999999999999999999999999999999999999999999999999998742
Q ss_pred ---CCceeEEeccCCCCeEEEEEcCCC-CeEEEEEeCCCcEEEEEcCCCeeeEEe--eCCceEEEEecCCCEEEEEEcCC
Q 002519 707 ---PGYSLRTFMGHSASVMSLDFHPNK-DDLICSCDGDGEIRYWSINNGSCTRVF--KGGTAQMRFQPHLGRYLAAAAEN 780 (913)
Q Consensus 707 ---~~~~~~~~~~h~~~V~sl~fsp~~-~~ll~sgs~Dg~I~iwdl~~~~~~~~~--~~~~~~v~~s~~~~~ll~~~~dg 780 (913)
.-+++..|..|.-+|+++...+.+ +..+++++.|.+|++||+..+..+..+ +..+.++..+|.+..+++|+.+|
T Consensus 160 ~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt~~G 239 (476)
T KOG0646|consen 160 NDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGTEEG 239 (476)
T ss_pred cCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEecCCcc
Confidence 235678899999999999887652 335669999999999999999988765 45678899999999999999999
Q ss_pred eEEEEECCCC----------------eEEEEecCCCC--CeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEee
Q 002519 781 VVSILDAETQ----------------ACRLSLQGHTK--PIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELS 841 (913)
Q Consensus 781 ~I~i~D~~t~----------------~~~~~l~~h~~--~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~ 841 (913)
.|.+.++... ..+..+.+|.+ .|+|++++-||.+|++|+.| .|+|||+.+. .+++.+.
T Consensus 240 ~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~---Q~iRtl~ 316 (476)
T KOG0646|consen 240 KIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSK---QCIRTLQ 316 (476)
T ss_pred eEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchH---HHHHHHh
Confidence 9999876542 34556778888 99999999999999999999 9999999765 6777776
Q ss_pred cCCCceEEEEEeCCCCEEEE
Q 002519 842 CNGNKFHSCVFHPTYPSLLV 861 (913)
Q Consensus 842 ~~~~~i~~l~~sp~g~~l~s 861 (913)
...++|+.+.+.|-.+.++.
T Consensus 317 ~~kgpVtnL~i~~~~~~~~l 336 (476)
T KOG0646|consen 317 TSKGPVTNLQINPLERGIIL 336 (476)
T ss_pred hhccccceeEeeccccceec
Confidence 56788888888765544444
No 124
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=6.4e-24 Score=235.68 Aligned_cols=237 Identities=27% Similarity=0.473 Sum_probs=211.6
Q ss_pred eeEeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcC
Q 002519 626 ANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDAD 705 (913)
Q Consensus 626 ~~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~ 705 (913)
.+.+-.|...|.|+..-..++.+++|+.|.++-||.+.....+..|.+|+.+|.||.|+.+..+|++|+.+|+|++||++
T Consensus 21 ~~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDle 100 (825)
T KOG0267|consen 21 TREFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLE 100 (825)
T ss_pred chhhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehh
Confidence 34566799999999997788999999999999999999888888899999999999999999999999999999999999
Q ss_pred CCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeCCceEEEEecCCCEEEEEEcCCeEEEE
Q 002519 706 NPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSIL 785 (913)
Q Consensus 706 ~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~s~~~~~ll~~~~dg~I~i~ 785 (913)
. .+.++++.+|...|.++.|+|.+.+ +++|+.|+.+++||++...|.
T Consensus 101 e-Ak~vrtLtgh~~~~~sv~f~P~~~~-~a~gStdtd~~iwD~Rk~Gc~------------------------------- 147 (825)
T KOG0267|consen 101 E-AKIVRTLTGHLLNITSVDFHPYGEF-FASGSTDTDLKIWDIRKKGCS------------------------------- 147 (825)
T ss_pred h-hhhhhhhhccccCcceeeeccceEE-eccccccccceehhhhccCce-------------------------------
Confidence 7 7889999999999999999999764 478888998888888754443
Q ss_pred ECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEEEEc
Q 002519 786 DAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGC 864 (913)
Q Consensus 786 D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~ 864 (913)
+.+.+|...|.++.|+|+|++++.+++| +++|||+..+ +.+.+|+.|...+..+.|+|..-.+..|+.
T Consensus 148 --------~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~ag---k~~~ef~~~e~~v~sle~hp~e~Lla~Gs~ 216 (825)
T KOG0267|consen 148 --------HTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAG---KLSKEFKSHEGKVQSLEFHPLEVLLAPGSS 216 (825)
T ss_pred --------eeecCCcceeEEEeecCCCceeeccCCcceeeeeccccc---ccccccccccccccccccCchhhhhccCCC
Confidence 3455678889999999999999999999 9999999876 788899999999999999999999999999
Q ss_pred CCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEeCC
Q 002519 865 YQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHD 906 (913)
Q Consensus 865 dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~Lasgs~D 906 (913)
|++|++||+++.+.+ ........|.+++|+++++.+++|..+
T Consensus 217 d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 217 DRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred CceeeeeccceeEEeeccCCccCCceeeeecCCceeeecCchh
Confidence 999999999998888 555668899999999999988887654
No 125
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.90 E-value=2.1e-20 Score=204.35 Aligned_cols=263 Identities=13% Similarity=0.093 Sum_probs=194.9
Q ss_pred eeeeEeecCCCCEEEEEEecCCCEE-EEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEE-eCCCeEEE
Q 002519 624 KEANSVRASTSKVICCHFSSDGKLL-ATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATS-SFDKTVRV 701 (913)
Q Consensus 624 ~~~~~l~~H~~~V~~l~fspdg~~L-asgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasg-s~Dg~V~I 701 (913)
+.+..+..|. .+.+++|+++++.| ++++.++.|++||+.+++.+..+..+.. +..++|+|+++.|+++ +.|+.|++
T Consensus 22 ~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~ 99 (300)
T TIGR03866 22 EVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFALHPNGKILYIANEDDNLVTV 99 (300)
T ss_pred ceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEE
Confidence 3445555554 47789999999876 5667889999999999888877765544 5788999999987655 56899999
Q ss_pred EEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCC-CcEEEEEcCCCeeeEEee--CCceEEEEecCCCEEEEEE-
Q 002519 702 WDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD-GEIRYWSINNGSCTRVFK--GGTAQMRFQPHLGRYLAAA- 777 (913)
Q Consensus 702 wdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~D-g~I~iwdl~~~~~~~~~~--~~~~~v~~s~~~~~ll~~~- 777 (913)
||+.+ ...+..+. +...+.+++|+|++..++ +++.+ ..+.+||.++++....+. .....+.|++++..+++++
T Consensus 100 ~d~~~-~~~~~~~~-~~~~~~~~~~~~dg~~l~-~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~ 176 (300)
T TIGR03866 100 IDIET-RKVLAEIP-VGVEPEGMAVSPDGKIVV-NTSETTNMAHFIDTKTYEIVDNVLVDQRPRFAEFTADGKELWVSSE 176 (300)
T ss_pred EECCC-CeEEeEee-CCCCcceEEECCCCCEEE-EEecCCCeEEEEeCCCCeEEEEEEcCCCccEEEECCCCCEEEEEcC
Confidence 99987 45555554 234578899999988665 55544 467788999887765432 3456688999998887665
Q ss_pred cCCeEEEEECCCCeEEEEecCCC-----C--CeEEEEEcCCCCEEEEE-eCC-eEEEEECCCCCCCceEEEeecCCCceE
Q 002519 778 AENVVSILDAETQACRLSLQGHT-----K--PIDSVCWDPSGELLASV-SED-SVRVWTVGSGSEGECVHELSCNGNKFH 848 (913)
Q Consensus 778 ~dg~I~i~D~~t~~~~~~l~~h~-----~--~V~sl~~spdg~~l~s~-s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~ 848 (913)
.++.|++||+++++.+..+..+. . ....++|+|++++++++ +.+ .|.+||++++ +.+..+. +...+.
T Consensus 177 ~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~---~~~~~~~-~~~~~~ 252 (300)
T TIGR03866 177 IGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTY---EVLDYLL-VGQRVW 252 (300)
T ss_pred CCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCC---cEEEEEE-eCCCcc
Confidence 48999999999998776654321 1 23468899999975544 334 8999999765 3333332 345788
Q ss_pred EEEEeCCCCEEEEEE-cCCeEEEEECCCCcEEEEcccCCCeEEEEEeC
Q 002519 849 SCVFHPTYPSLLVIG-CYQSLELWNMSENKTMTLTAHEGLIAALAVST 895 (913)
Q Consensus 849 ~l~~sp~g~~l~s~s-~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~sp 895 (913)
+++|+|++.+|+++. .++.|+|||+.+++++.........+.++|+|
T Consensus 253 ~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~ 300 (300)
T TIGR03866 253 QLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVGRLPWGVVVRP 300 (300)
T ss_pred eEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcccccceeEeCC
Confidence 999999999998874 58999999999999874444556678888764
No 126
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=2.3e-22 Score=203.63 Aligned_cols=256 Identities=20% Similarity=0.339 Sum_probs=214.7
Q ss_pred EEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCceeEEeccCCCCeEEEEE
Q 002519 647 LLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDF 726 (913)
Q Consensus 647 ~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~f 726 (913)
.|++.-.+++++ ...++.+.+|.+.|+.++-......+.+++.|.+.+||.+++ +.++..+.||.+.|++|.|
T Consensus 126 rivssFk~~t~~------~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Es-g~CL~~Y~GH~GSVNsikf 198 (481)
T KOG0300|consen 126 RIVSSFKDGTVK------FRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLES-GACLATYTGHTGSVNSIKF 198 (481)
T ss_pred hheeeecCCcee------EeehhhhcccccceeeehhhcCCcceeecccccceeEEeecc-ccceeeecccccceeeEEe
Confidence 445555566543 356778899999999999988888999999999999999998 8899999999999999999
Q ss_pred cCCCCeEEEEEeCCCcEEEEEc------CCCe----------------------------------eeEEeeCC---ceE
Q 002519 727 HPNKDDLICSCDGDGEIRYWSI------NNGS----------------------------------CTRVFKGG---TAQ 763 (913)
Q Consensus 727 sp~~~~ll~sgs~Dg~I~iwdl------~~~~----------------------------------~~~~~~~~---~~~ 763 (913)
++.+. |+++++.|++-.||.. .... .+..+.++ +.+
T Consensus 199 h~s~~-L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a 277 (481)
T KOG0300|consen 199 HNSGL-LLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSA 277 (481)
T ss_pred ccccc-eEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEe
Confidence 99855 6679999999999972 1100 01112222 233
Q ss_pred EEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEeec
Q 002519 764 MRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSC 842 (913)
Q Consensus 764 v~~s~~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~ 842 (913)
..|...+..+++++.|.+..+||+++++++..+.+|....+.++-+|.-+++++.+.| ++++||++ +....+..|.+
T Consensus 278 ~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFR--eaI~sV~VFQG 355 (481)
T KOG0300|consen 278 CDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFR--EAIQSVAVFQG 355 (481)
T ss_pred hhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccch--hhcceeeeecc
Confidence 4477778899999999999999999999999999999999999999999999999999 99999998 45678889999
Q ss_pred CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcE-EEEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 002519 843 NGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKT-MTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 913 (913)
Q Consensus 843 ~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~-~~~~~h~~~V~~l~~spdg~~Lasgs~DG~I~IWd 913 (913)
|...|+++.|.-+.+ +++|+.|.+|+|||+++-+. +.....+++++.++++..+.+|+.--++..|+|||
T Consensus 356 HtdtVTS~vF~~dd~-vVSgSDDrTvKvWdLrNMRsplATIRtdS~~NRvavs~g~~iIAiPhDNRqvRlfD 426 (481)
T KOG0300|consen 356 HTDTVTSVVFNTDDR-VVSGSDDRTVKVWDLRNMRSPLATIRTDSPANRVAVSKGHPIIAIPHDNRQVRLFD 426 (481)
T ss_pred cccceeEEEEecCCc-eeecCCCceEEEeeeccccCcceeeecCCccceeEeecCCceEEeccCCceEEEEe
Confidence 999999999988765 89999999999999987654 35556778899999999888999888889999997
No 127
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=1.7e-22 Score=226.11 Aligned_cols=274 Identities=20% Similarity=0.367 Sum_probs=213.9
Q ss_pred CCEEEEEEecCCCEEEEEeCCCcEEEEECCCC----ceeeEecc---CCCCeEEEEECC-CCCEEEEEeCCCeEEEEEcC
Q 002519 634 SKVICCHFSSDGKLLATGGHDKKAVLWHTDTL----KSKTNLEE---HSSLITDVRFSP-SMPRLATSSFDKTVRVWDAD 705 (913)
Q Consensus 634 ~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~----~~~~~l~~---h~~~V~~l~fsp-dg~~Lasgs~Dg~V~Iwdl~ 705 (913)
..+.+|...++-..|+.++. ..++||.+... ++...++. -...+.+|+|.. +.++|||++..|.|.+||+.
T Consensus 40 ~~~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdln 118 (839)
T KOG0269|consen 40 AKANAISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLN 118 (839)
T ss_pred cccceEeecCCcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecC
Confidence 34566777788888887774 36777776522 22222221 112356778874 35689999999999999998
Q ss_pred C--CCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeC---CceEEEEecCCCE-EEEEEcC
Q 002519 706 N--PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGR-YLAAAAE 779 (913)
Q Consensus 706 ~--~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~s~~~~~-ll~~~~d 779 (913)
. ..+.+..|..|...|++++|++...++|++|+.||+|++||++..+...++.+ .+..+.|+|..+. |+++...
T Consensus 119 k~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~ds 198 (839)
T KOG0269|consen 119 KSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDS 198 (839)
T ss_pred ccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCC
Confidence 6 23456688899999999999999999999999999999999999988877765 4566889987654 5555567
Q ss_pred CeEEEEECCCC-eEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCC
Q 002519 780 NVVSILDAETQ-ACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYP 857 (913)
Q Consensus 780 g~I~i~D~~t~-~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~ 857 (913)
|.+.+||+|.. ++...+.+|.++|.|+.|+|++.+||+|+.| .|+|||+.+... ..+..+. ...++.++.|-|...
T Consensus 199 G~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~-~~~~tIn-Tiapv~rVkWRP~~~ 276 (839)
T KOG0269|consen 199 GYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRA-KPKHTIN-TIAPVGRVKWRPARS 276 (839)
T ss_pred ceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCc-cceeEEe-ecceeeeeeeccCcc
Confidence 89999999986 6778889999999999999999999999999 999999976532 3333333 267899999999987
Q ss_pred EEEEEE---cCCeEEEEECCCCcEE--EEcccCCCeEEEEEeC-CCCEEEEEeCCCcEE
Q 002519 858 SLLVIG---CYQSLELWNMSENKTM--TLTAHEGLIAALAVST-ETGYVASASHDKFVK 910 (913)
Q Consensus 858 ~l~s~s---~dg~I~iwd~~~~~~~--~~~~h~~~V~~l~~sp-dg~~Lasgs~DG~I~ 910 (913)
+.++.+ .|-.|+|||++..-+- ++..|...|+.++|.. |...+.+++.||+|.
T Consensus 277 ~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~ 335 (839)
T KOG0269|consen 277 YHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVL 335 (839)
T ss_pred chhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHH
Confidence 755544 3569999999877544 7889999999999965 455788999999864
No 128
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.89 E-value=1.6e-21 Score=215.95 Aligned_cols=283 Identities=20% Similarity=0.304 Sum_probs=220.9
Q ss_pred eEeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCC--cee--e---EeccCCCCeEEEEECCCCCEEEEEeCCCeE
Q 002519 627 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL--KSK--T---NLEEHSSLITDVRFSPSMPRLATSSFDKTV 699 (913)
Q Consensus 627 ~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~--~~~--~---~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V 699 (913)
..+.||++.|+++.|+|.+..|++++.|+++.||.-++. --+ . ...+........-|+|++..|++-+..|-.
T Consensus 261 all~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~ 340 (764)
T KOG1063|consen 261 ALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGF 340 (764)
T ss_pred hhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcE
Confidence 345699999999999999999999999999999987643 211 1 222445668899999999999999999999
Q ss_pred EEEEcCCCCc--eeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCee-eEEe------eCCceEEEEecCC
Q 002519 700 RVWDADNPGY--SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC-TRVF------KGGTAQMRFQPHL 770 (913)
Q Consensus 700 ~Iwdl~~~~~--~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~-~~~~------~~~~~~v~~s~~~ 770 (913)
++|....... ....+.||.+.|.+|+|+|.|++|| +.+.|-+-|+|-.-..+. -..+ .....++++.+..
T Consensus 341 hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflL-svs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~ 419 (764)
T KOG1063|consen 341 HLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLL-SVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNED 419 (764)
T ss_pred EEEeccCccceeeccccccccccceeeeecCCCCEEE-EeccccceeeecccccccceeeecccccccccceeeehccCC
Confidence 9999433222 2345669999999999999998666 888999999987552111 1111 1234566666655
Q ss_pred CEEEEEEcCCeEEEEECC-------------------------------------------CCe----------------
Q 002519 771 GRYLAAAAENVVSILDAE-------------------------------------------TQA---------------- 791 (913)
Q Consensus 771 ~~ll~~~~dg~I~i~D~~-------------------------------------------t~~---------------- 791 (913)
-.++.++.+..+|+|+.. ++.
T Consensus 420 ~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~ 499 (764)
T KOG1063|consen 420 LQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCE 499 (764)
T ss_pred ceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchh
Confidence 666667777777877642 000
Q ss_pred -----------------EEEEecCCCCCeEEEEEcCCCCEEEEEeCC------eEEEEECCCCCCCceEEEeecCCCceE
Q 002519 792 -----------------CRLSLQGHTKPIDSVCWDPSGELLASVSED------SVRVWTVGSGSEGECVHELSCNGNKFH 848 (913)
Q Consensus 792 -----------------~~~~l~~h~~~V~sl~~spdg~~l~s~s~d------~I~vwdl~~~~~~~~i~~~~~~~~~i~ 848 (913)
.+.++.+|...|++++.+|+++++++++.. .|++|+..+. ..+..+..|.-.|+
T Consensus 500 L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W---~~~~~L~~HsLTVT 576 (764)
T KOG1063|consen 500 LTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANW---LQVQELEGHSLTVT 576 (764)
T ss_pred ccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccch---hhhheecccceEEE
Confidence 011255788889999999999999999854 5899998765 55668889999999
Q ss_pred EEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-----EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 002519 849 SCVFHPTYPSLLVIGCYQSLELWNMSENKTM-----TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 913 (913)
Q Consensus 849 ~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~-----~~~~h~~~V~~l~~spdg~~Lasgs~DG~I~IWd 913 (913)
.++|+||+++|++.+.|+++.+|........ ....|..-|+++.|+|++.+++|+|.|++|+||.
T Consensus 577 ~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~ 646 (764)
T KOG1063|consen 577 RLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWE 646 (764)
T ss_pred EEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEe
Confidence 9999999999999999999999988654433 4678999999999999999999999999999995
No 129
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.89 E-value=7.6e-22 Score=210.28 Aligned_cols=240 Identities=20% Similarity=0.369 Sum_probs=195.4
Q ss_pred ccCCCCeEEEEECCCCC-EEEEEeCCCeEEEEEcCCCCc---------eeEEeccCCCCeEEEEEcCCCCeEEEEEeCCC
Q 002519 672 EEHSSLITDVRFSPSMP-RLATSSFDKTVRVWDADNPGY---------SLRTFMGHSASVMSLDFHPNKDDLICSCDGDG 741 (913)
Q Consensus 672 ~~h~~~V~~l~fspdg~-~Lasgs~Dg~V~Iwdl~~~~~---------~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg 741 (913)
..|.+.|+.+++-|... +|++.+..+.|.|||...... +-.++.+|...-++|+|++.....+++++.|+
T Consensus 121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~ 200 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDH 200 (422)
T ss_pred ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCC
Confidence 35899999999999765 566777899999999875221 12377899998899999998888888999999
Q ss_pred cEEEEEcCCCee-------eEEeeC---CceEEEEecCCCE-EEEEEcCCeEEEEECC--CCeEEEEecCCCCCeEEEEE
Q 002519 742 EIRYWSINNGSC-------TRVFKG---GTAQMRFQPHLGR-YLAAAAENVVSILDAE--TQACRLSLQGHTKPIDSVCW 808 (913)
Q Consensus 742 ~I~iwdl~~~~~-------~~~~~~---~~~~v~~s~~~~~-ll~~~~dg~I~i~D~~--t~~~~~~l~~h~~~V~sl~~ 808 (913)
.|++||+..... ...+.+ .+..++|++.... |.+++.|+.+.|||+| +.++.....+|...|+|++|
T Consensus 201 ~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~f 280 (422)
T KOG0264|consen 201 TICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAF 280 (422)
T ss_pred cEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEe
Confidence 999999976432 223443 3456788887654 5556678999999999 56778888999999999999
Q ss_pred cCC-CCEEEEEeCC-eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCC-CEEEEEEcCCeEEEEECCCC-c-------
Q 002519 809 DPS-GELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTY-PSLLVIGCYQSLELWNMSEN-K------- 877 (913)
Q Consensus 809 spd-g~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g-~~l~s~s~dg~I~iwd~~~~-~------- 877 (913)
+|- +.+||+|+.| +|++||+|+.. .+++.+.+|...|..+.|+|.. ..|++++.|+.+.|||+..- +
T Consensus 281 np~~~~ilAT~S~D~tV~LwDlRnL~--~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda 358 (422)
T KOG0264|consen 281 NPFNEFILATGSADKTVALWDLRNLN--KPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDA 358 (422)
T ss_pred CCCCCceEEeccCCCcEEEeechhcc--cCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhh
Confidence 995 4588999988 99999999764 5899999999999999999976 46777788999999998631 1
Q ss_pred -------EEEEcccCCCeEEEEEeCCCC-EEEEEeCCCcEEEeC
Q 002519 878 -------TMTLTAHEGLIAALAVSTETG-YVASASHDKFVKLWK 913 (913)
Q Consensus 878 -------~~~~~~h~~~V~~l~~spdg~-~Lasgs~DG~I~IWd 913 (913)
++.-.+|...|..+.|+|+.. .|+|+++|+.+.||+
T Consensus 359 ~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~ 402 (422)
T KOG0264|consen 359 EDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQ 402 (422)
T ss_pred ccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEee
Confidence 125568999999999999887 578889999999996
No 130
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.89 E-value=6.3e-22 Score=217.34 Aligned_cols=274 Identities=23% Similarity=0.306 Sum_probs=208.5
Q ss_pred EEEEec---CCCEEEEEeCCCcEEEEECCCCce------eeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCC
Q 002519 638 CCHFSS---DGKLLATGGHDKKAVLWHTDTLKS------KTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG 708 (913)
Q Consensus 638 ~l~fsp---dg~~Lasgs~Dg~V~vwd~~~~~~------~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~ 708 (913)
++.|++ ...+||.+..||.|.++|...... ++....|...|.++.|-|....|++++.|.++++||++. .
T Consensus 54 ~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~-s 132 (720)
T KOG0321|consen 54 ADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKT-S 132 (720)
T ss_pred cccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeecc-c
Confidence 356655 346899999999999999874332 245567999999999999777999999999999999997 5
Q ss_pred ceeEE--eccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeE----------EeeC-----------------
Q 002519 709 YSLRT--FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR----------VFKG----------------- 759 (913)
Q Consensus 709 ~~~~~--~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~----------~~~~----------------- 759 (913)
.++.. +.+|...|.++||.+.+..+||+|+.||.|.|||++...... .+++
T Consensus 133 ~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA 212 (720)
T KOG0321|consen 133 RLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKA 212 (720)
T ss_pred eeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccccccc
Confidence 55544 889999999999999999999999999999999997543100 0000
Q ss_pred ---Cce---EEEEecCCCEEEEEEc-CCeEEEEECCCCeEEEEe--------cCC---CCCeEEEEEcCCCCEEEEEeCC
Q 002519 760 ---GTA---QMRFQPHLGRYLAAAA-ENVVSILDAETQACRLSL--------QGH---TKPIDSVCWDPSGELLASVSED 821 (913)
Q Consensus 760 ---~~~---~v~~s~~~~~ll~~~~-dg~I~i~D~~t~~~~~~l--------~~h---~~~V~sl~~spdg~~l~s~s~d 821 (913)
.+. .+.+.-|...|++++. |+.|+|||+++....... ..| ...+.+++.+..|.+|++.+.|
T Consensus 213 ~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD 292 (720)
T KOG0321|consen 213 ASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTD 292 (720)
T ss_pred ccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecC
Confidence 111 1456667788888777 999999999986544332 223 2357788888888877666667
Q ss_pred -eEEEEECCCCCCCceEEEeecCCCc--eEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE--EEcccCCCeEEEEEeCC
Q 002519 822 -SVRVWTVGSGSEGECVHELSCNGNK--FHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM--TLTAHEGLIAALAVSTE 896 (913)
Q Consensus 822 -~I~vwdl~~~~~~~~i~~~~~~~~~--i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~--~~~~h~~~V~~l~~spd 896 (913)
+|++|++.+... ..+..+.++... ...-..+|++.++++|+.|...++|.+.....- .+.+|.-.|++++|.|.
T Consensus 293 ~sIy~ynm~s~s~-sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS 371 (720)
T KOG0321|consen 293 NSIYFYNMRSLSI-SPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPS 371 (720)
T ss_pred CcEEEEeccccCc-CchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccc
Confidence 999999986532 333333333222 233457899999999999999999999877643 78899999999999874
Q ss_pred C-CEEEEEeCCCcEEEeC
Q 002519 897 T-GYVASASHDKFVKLWK 913 (913)
Q Consensus 897 g-~~Lasgs~DG~I~IWd 913 (913)
. .-+++|++|..++||+
T Consensus 372 ~~t~v~TcSdD~~~kiW~ 389 (720)
T KOG0321|consen 372 ATTPVATCSDDFRVKIWR 389 (720)
T ss_pred cCCCceeeccCcceEEEe
Confidence 3 3477889999999996
No 131
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=4e-20 Score=204.98 Aligned_cols=354 Identities=13% Similarity=0.174 Sum_probs=245.2
Q ss_pred cceEEEEcCCCcccc---CCCCeEEeCCCcchhhhcccccccCCccCceeeeccc-CCCCCCCCCCcccccccCccceee
Q 002519 551 KPLMMFGTDGAGTLT---SPSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSH-DDTDPRDAGGRGMDVSQGFSFKEA 626 (913)
Q Consensus 551 ~~~~~~s~dg~~~~~---~~~~~vWd~~~g~~~~~~~~~~~~g~~d~~v~~~~~~-d~~~~~d~~~~~~~~~~~~~~~~~ 626 (913)
...++|+.+..-++. ++.++||++...=+ .+ ..-.|..|..++..+.. .....-.+.......++-.+++.+
T Consensus 28 I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~---~~-~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~lk~~ 103 (691)
T KOG2048|consen 28 IVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWF---LE-PVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDLHTLKQK 103 (691)
T ss_pred eEEEEEeccCCceeeeccCCcEEEEccCCCce---ee-EEEecCCCCceeeEEEccCCeEEeecCCceEEEEecccCcee
Confidence 346677776665333 67789999988422 11 22334667777776444 232222222333334445567888
Q ss_pred eEeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceee--EeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEc
Q 002519 627 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKT--NLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDA 704 (913)
Q Consensus 627 ~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~--~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl 704 (913)
..+....+.|++++.+|.++.++.|++||.+++++...++... .|...++.|.+|+|++++..|++||.||.|++||+
T Consensus 104 ~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~ 183 (691)
T KOG2048|consen 104 YNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDV 183 (691)
T ss_pred EEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEc
Confidence 8888899999999999999999999999988888887766543 35556789999999999999999999999999999
Q ss_pred CCCCceeE------Ee-ccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEe---eCCceEEEEecCCCEEE
Q 002519 705 DNPGYSLR------TF-MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF---KGGTAQMRFQPHLGRYL 774 (913)
Q Consensus 705 ~~~~~~~~------~~-~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~---~~~~~~v~~s~~~~~ll 774 (913)
..+..... .+ ++...-|+++.|..++ .|++|+.-|+|.+||...+..+..+ ...+.+++..+++++++
T Consensus 184 ~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~--tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vf 261 (691)
T KOG2048|consen 184 KSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS--TIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVF 261 (691)
T ss_pred CCCceEEEeeecccccccCCceEEEEEEEeecC--cEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEE
Confidence 87443221 11 1244568888888654 5779999999999999999887665 45678899999999999
Q ss_pred EEEcCCeEEEEECCCCeE----EEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCC-------------------
Q 002519 775 AAAAENVVSILDAETQAC----RLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGS------------------- 830 (913)
Q Consensus 775 ~~~~dg~I~i~D~~t~~~----~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~------------------- 830 (913)
+++.|+.|..|...+.+. ......|...|.+++..++ .+++|+.| .+.+-..+.
T Consensus 262 saGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~ 339 (691)
T KOG2048|consen 262 SAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSREFKNMDHRQKNLFPASDRVS 339 (691)
T ss_pred EccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEEccccccCchhhhccccccccceee
Confidence 999999999888776633 2223457888888888765 66666666 444433221
Q ss_pred -----------------------C------CCCceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECC-------
Q 002519 831 -----------------------G------SEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMS------- 874 (913)
Q Consensus 831 -----------------------~------~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~------- 874 (913)
. .....++........|.+++.+|+|.+|+.+... .++||.+.
T Consensus 340 ~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~~-~~~iy~L~~~~~vk~ 418 (691)
T KOG2048|consen 340 VAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISPDGNLIAISTVS-RTKIYRLQPDPNVKV 418 (691)
T ss_pred cCccceEEEEeccccccceeccCcccccccChhhheeeecCCccceeeeccCCCCCEEEEeecc-ceEEEEeccCcceeE
Confidence 1 0011112222234568899999999988888721 12222211
Q ss_pred -----------------------------------------CCcEE-----EEcccCCCeEEEEEeCCCCEEEEEeCCCc
Q 002519 875 -----------------------------------------ENKTM-----TLTAHEGLIAALAVSTETGYVASASHDKF 908 (913)
Q Consensus 875 -----------------------------------------~~~~~-----~~~~h~~~V~~l~~spdg~~Lasgs~DG~ 908 (913)
+.... .-.+....|..+..+++|.+||+.+.+|.
T Consensus 419 ~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~g~ 498 (691)
T KOG2048|consen 419 INVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAISTRGQ 498 (691)
T ss_pred EEeccchhhhccceeeEEEecCceEEEEecccceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEeccce
Confidence 11100 00123457899999999999999999999
Q ss_pred EEEeC
Q 002519 909 VKLWK 913 (913)
Q Consensus 909 I~IWd 913 (913)
|.+|+
T Consensus 499 I~v~n 503 (691)
T KOG2048|consen 499 IFVYN 503 (691)
T ss_pred EEEEE
Confidence 99996
No 132
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=8.7e-21 Score=216.49 Aligned_cols=275 Identities=14% Similarity=0.233 Sum_probs=216.2
Q ss_pred ecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCC-ceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCC
Q 002519 630 RASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL-KSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG 708 (913)
Q Consensus 630 ~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~-~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~ 708 (913)
.+|+..-+.|+|.++|.+|++++.||.|++|+.... +...++..+...|.+++.. ..+|++|+.+++|.+|.+.+ +
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps-~ 86 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPS-G 86 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec--ccceEEeeccceEEEeeCCC-C
Confidence 368999999999999999999999999999998765 5555665588888888875 44999999999999999987 4
Q ss_pred ceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEe---eCCceEEEEecCCCEEEEEEcCCeEEEE
Q 002519 709 YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF---KGGTAQMRFQPHLGRYLAAAAENVVSIL 785 (913)
Q Consensus 709 ~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~---~~~~~~v~~s~~~~~ll~~~~dg~I~i~ 785 (913)
..-..+....-++.+++|+.+|. +++.|++|-.|++.++.+....+.+ ++.+.++.|+|.+..+++.+.||.|+||
T Consensus 87 ~~~~iL~Rftlp~r~~~v~g~g~-~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw 165 (933)
T KOG1274|consen 87 EEDTILARFTLPIRDLAVSGSGK-MIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIW 165 (933)
T ss_pred CccceeeeeeccceEEEEecCCc-EEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEE
Confidence 33334444567899999999877 5568999999999999887666555 4567889999999999999999999999
Q ss_pred ECCCCeEEEEecCC--------CCCeEEEEEcCCCC-EEEEEeCCeEEEEECCCCCCCceEEEeecCCCceEEEEEeCCC
Q 002519 786 DAETQACRLSLQGH--------TKPIDSVCWDPSGE-LLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTY 856 (913)
Q Consensus 786 D~~t~~~~~~l~~h--------~~~V~sl~~spdg~-~l~s~s~d~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g 856 (913)
|+.++.+.+++.+- ...+..++|+|+|. +++.+.++.|++|+.........+. .+.+...+..+.|+|.|
T Consensus 166 ~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr-~~~~ss~~~~~~wsPnG 244 (933)
T KOG1274|consen 166 DLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLR-DKLSSSKFSDLQWSPNG 244 (933)
T ss_pred EcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeec-ccccccceEEEEEcCCC
Confidence 99999887776542 34567789999965 5555555599999998764332222 22334459999999999
Q ss_pred CEEEEEEcCCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEe
Q 002519 857 PSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLW 912 (913)
Q Consensus 857 ~~l~s~s~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~DG~I~IW 912 (913)
.||++++.+|.|.|||+.+... ......|.|++|.|++..|-.-...|...+|
T Consensus 245 ~YiAAs~~~g~I~vWnv~t~~~---~~~~~~Vc~~aw~p~~n~it~~~~~g~~~~~ 297 (933)
T KOG1274|consen 245 KYIAASTLDGQILVWNVDTHER---HEFKRAVCCEAWKPNANAITLITALGTLGVS 297 (933)
T ss_pred cEEeeeccCCcEEEEecccchh---ccccceeEEEecCCCCCeeEEEeeccccccC
Confidence 9999999999999999998222 3445689999999998866555545544443
No 133
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=4.7e-20 Score=204.44 Aligned_cols=277 Identities=15% Similarity=0.215 Sum_probs=227.9
Q ss_pred eEeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCC-CceeeEeccC-CCCeEEEEECCCCCEEEEEeCCCeEEEEEc
Q 002519 627 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT-LKSKTNLEEH-SSLITDVRFSPSMPRLATSSFDKTVRVWDA 704 (913)
Q Consensus 627 ~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~-~~~~~~l~~h-~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl 704 (913)
+.+.--...|+|+||+.+.+.||.+-.||.|.||++.. .-....+.++ ...|.+|+|+ ++.+|++.+.+|.|.-||+
T Consensus 19 rf~d~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl 97 (691)
T KOG2048|consen 19 RFVDYKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDL 97 (691)
T ss_pred EEEeeeccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEec
Confidence 34445567899999999999999999999999999985 4555666665 4679999999 5668999999999999999
Q ss_pred CCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEe-----eCCceEEEEecCCCEEEEEEcC
Q 002519 705 DNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF-----KGGTAQMRFQPHLGRYLAAAAE 779 (913)
Q Consensus 705 ~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~-----~~~~~~v~~s~~~~~ll~~~~d 779 (913)
.+ .+....+....+.|++++.+|.+. .++.|++||.++++++..++..... ++.+.++.|.+++.+++.|+.|
T Consensus 98 ~~-lk~~~~~d~~gg~IWsiai~p~~~-~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~D 175 (691)
T KOG2048|consen 98 HT-LKQKYNIDSNGGAIWSIAINPENT-ILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSID 175 (691)
T ss_pred cc-CceeEEecCCCcceeEEEeCCccc-eEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccC
Confidence 98 777788888889999999999876 5558889998889998887765432 3567889999999999999999
Q ss_pred CeEEEEECCCCeEEEEec-----C---CCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCCceEEEeecCCCceEEEE
Q 002519 780 NVVSILDAETQACRLSLQ-----G---HTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCV 851 (913)
Q Consensus 780 g~I~i~D~~t~~~~~~l~-----~---h~~~V~sl~~spdg~~l~s~s~d~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~ 851 (913)
|.|++||+.++..++... . ...-|+++.|-.++.++..-+.++|.+||...+ ..+..+..|...|.+++
T Consensus 176 g~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~g---TLiqS~~~h~adVl~La 252 (691)
T KOG2048|consen 176 GVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWDSIFG---TLIQSHSCHDADVLALA 252 (691)
T ss_pred ceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEEecCCceEEEEcccCc---chhhhhhhhhcceeEEE
Confidence 999999999997666221 1 223478888886665444334449999999776 77888889999999999
Q ss_pred EeCCCCEEEEEEcCCeEEEEECCCCcE-----EEEcccCCCeEEEEEeCCCCEEEEEeCCCcEEE
Q 002519 852 FHPTYPSLLVIGCYQSLELWNMSENKT-----MTLTAHEGLIAALAVSTETGYVASASHDKFVKL 911 (913)
Q Consensus 852 ~sp~g~~l~s~s~dg~I~iwd~~~~~~-----~~~~~h~~~V~~l~~spdg~~Lasgs~DG~I~I 911 (913)
..+++.++++++.|+.|..|...+++. .....|...|.+++..++ .|++|+.|+.+.|
T Consensus 253 v~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i 315 (691)
T KOG2048|consen 253 VADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAI 315 (691)
T ss_pred EcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEE
Confidence 999999999999999999998877643 145578999999999888 8999999998875
No 134
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.87 E-value=1e-20 Score=201.13 Aligned_cols=292 Identities=17% Similarity=0.277 Sum_probs=215.6
Q ss_pred CccceeeeEeecCCCCEEEEEEecCC--CEEEEEeCCCcEEEEECC----CCceeeEeccCCCCeEEEEECCCC-CEEEE
Q 002519 620 GFSFKEANSVRASTSKVICCHFSSDG--KLLATGGHDKKAVLWHTD----TLKSKTNLEEHSSLITDVRFSPSM-PRLAT 692 (913)
Q Consensus 620 ~~~~~~~~~l~~H~~~V~~l~fspdg--~~Lasgs~Dg~V~vwd~~----~~~~~~~l~~h~~~V~~l~fspdg-~~Las 692 (913)
...+.....++.+.++|+|++|+|.. +++|+|+.-|.|-+||+. ....+..+..|..+|.+|.|+|.+ ..|++
T Consensus 173 l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~s 252 (498)
T KOG4328|consen 173 LDDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYS 252 (498)
T ss_pred cccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheee
Confidence 34566777888999999999999955 589999999999999995 234466788899999999999964 58999
Q ss_pred EeCCCeEEEEEcCCCC-ceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCee----eEEeeCCceEEEEe
Q 002519 693 SSFDKTVRVWDADNPG-YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC----TRVFKGGTAQMRFQ 767 (913)
Q Consensus 693 gs~Dg~V~Iwdl~~~~-~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~----~~~~~~~~~~v~~s 767 (913)
.|.||+||+-|+++.- ..+.........+.++.|+.+...++ .++.=|...+||++++.. ++..+..+..++++
T Consensus 253 sSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl-~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~N 331 (498)
T KOG4328|consen 253 SSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVL-FGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALN 331 (498)
T ss_pred eccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEE-EeecccceEEEEeecCCccchhhhhhhcccceeecC
Confidence 9999999999998622 12233333455677788888766665 666667999999998754 23334477889999
Q ss_pred cCCCEE-EEEEcCCeEEEEECCCCe----EEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCC-CCCceEEEe
Q 002519 768 PHLGRY-LAAAAENVVSILDAETQA----CRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSG-SEGECVHEL 840 (913)
Q Consensus 768 ~~~~~l-l~~~~dg~I~i~D~~t~~----~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~-~~~~~i~~~ 840 (913)
|-..++ ++++.|++++|||++... ++.....|...|.++.|+|++-.|++.+.| .|+|||.... ........+
T Consensus 332 P~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I 411 (498)
T KOG4328|consen 332 PVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTI 411 (498)
T ss_pred CCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCcccee
Confidence 988765 455669999999998742 234455699999999999987778888888 9999998411 111111121
Q ss_pred e---cCCCc--eEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEccc-CCCeEE-EEEeCCCCEEEE-EeCCCcEEE
Q 002519 841 S---CNGNK--FHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAH-EGLIAA-LAVSTETGYVAS-ASHDKFVKL 911 (913)
Q Consensus 841 ~---~~~~~--i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~-~~~~h-~~~V~~-l~~spdg~~Las-gs~DG~I~I 911 (913)
. .+... .....|.|+..+|++|-.-..|.|||-..++.+ .+... ...|.+ ..|+|-+..+++ ++..|.|+|
T Consensus 412 ~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~v 491 (498)
T KOG4328|consen 412 PHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYV 491 (498)
T ss_pred eccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEE
Confidence 1 11222 334579999999999999999999999998855 43332 235555 489998884444 556789999
Q ss_pred e
Q 002519 912 W 912 (913)
Q Consensus 912 W 912 (913)
|
T Consensus 492 f 492 (498)
T KOG4328|consen 492 F 492 (498)
T ss_pred E
Confidence 8
No 135
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.87 E-value=2.4e-20 Score=189.95 Aligned_cols=225 Identities=18% Similarity=0.319 Sum_probs=183.8
Q ss_pred cCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCce
Q 002519 631 ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYS 710 (913)
Q Consensus 631 ~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~ 710 (913)
.|..+|.+|+|.+ ...+++|+.||.|+++|+.++. ...+..|...|.||.+++....+++||.|++|++||.+. ...
T Consensus 52 ~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~-~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~-~~~ 128 (323)
T KOG1036|consen 52 KHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGN-EDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRN-KVV 128 (323)
T ss_pred ecCCceeeeeccC-CceEEEeccCceEEEEEecCCc-ceeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccc-ccc
Confidence 3788999999987 4588999999999999999876 455667999999999999999999999999999999986 334
Q ss_pred eEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeee-----EEeeCCceEEEEecCCCEEEEEEcCCeEEEE
Q 002519 711 LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT-----RVFKGGTAQMRFQPHLGRYLAAAAENVVSIL 785 (913)
Q Consensus 711 ~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~-----~~~~~~~~~v~~s~~~~~ll~~~~dg~I~i~ 785 (913)
...+. ....|.++... ++ .|++|..|..|.+||+++.... ..++-.+.++++.|.+.-+++++-||+|.+=
T Consensus 129 ~~~~d-~~kkVy~~~v~--g~-~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE 204 (323)
T KOG1036|consen 129 VGTFD-QGKKVYCMDVS--GN-RLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVE 204 (323)
T ss_pred ccccc-cCceEEEEecc--CC-EEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEE
Confidence 44443 33489888886 33 4558888999999999986543 3455567889999988899999999999887
Q ss_pred ECCCC----eEEEEecCCCC---------CeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEeecCCCceEEEE
Q 002519 786 DAETQ----ACRLSLQGHTK---------PIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCV 851 (913)
Q Consensus 786 D~~t~----~~~~~l~~h~~---------~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~ 851 (913)
.++.. +..+.|+.|.. +|++|+|+|-...|++|+.| .|.+||+.+. +.+..+......|.+++
T Consensus 205 ~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~r---Krl~q~~~~~~SI~sls 281 (323)
T KOG1036|consen 205 YFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNR---KRLKQLAKYETSISSLS 281 (323)
T ss_pred ccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcch---hhhhhccCCCCceEEEE
Confidence 76665 55667777753 69999999998899999999 9999999776 44555555567899999
Q ss_pred EeCCCCEEEEEEcC
Q 002519 852 FHPTYPSLLVIGCY 865 (913)
Q Consensus 852 ~sp~g~~l~s~s~d 865 (913)
|+.+|..|+++++.
T Consensus 282 fs~dG~~LAia~sy 295 (323)
T KOG1036|consen 282 FSMDGSLLAIASSY 295 (323)
T ss_pred eccCCCeEEEEech
Confidence 99999999999863
No 136
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.87 E-value=1.5e-20 Score=195.30 Aligned_cols=246 Identities=21% Similarity=0.422 Sum_probs=197.5
Q ss_pred eecCCCCEEEEEEecCC--CEEEEEeCCCcEEEEECC----------------CCceeeEeccCCCCeEEEEECCCC-CE
Q 002519 629 VRASTSKVICCHFSSDG--KLLATGGHDKKAVLWHTD----------------TLKSKTNLEEHSSLITDVRFSPSM-PR 689 (913)
Q Consensus 629 l~~H~~~V~~l~fspdg--~~Lasgs~Dg~V~vwd~~----------------~~~~~~~l~~h~~~V~~l~fspdg-~~ 689 (913)
.-.|.+.|..+..++-+ .+.|+-+..|.|.||++. ..+.+.++.+|...-+.|+|+|-. ..
T Consensus 147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~ 226 (440)
T KOG0302|consen 147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGR 226 (440)
T ss_pred ccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccc
Confidence 34688888888877754 466667788999999974 245678899999999999999943 36
Q ss_pred EEEEeCCCeEEEEEcCCCCcee--EEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeCCceEEEEe
Q 002519 690 LATSSFDKTVRVWDADNPGYSL--RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQ 767 (913)
Q Consensus 690 Lasgs~Dg~V~Iwdl~~~~~~~--~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~s 767 (913)
|++|..-+.|++|...++...+ ..|.+|...|..|+|+|..+.+|++|+.||+|+|||++.+....
T Consensus 227 LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~------------ 294 (440)
T KOG0302|consen 227 LLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKA------------ 294 (440)
T ss_pred cccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccc------------
Confidence 8888888899999998855443 45678999999999999999999999999999999999763211
Q ss_pred cCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEeecCCCc
Q 002519 768 PHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNK 846 (913)
Q Consensus 768 ~~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~ 846 (913)
++ ..+.|...|+.|.|+....+|++|++| +++|||+|.......+..++.|..+
T Consensus 295 ------------------------~~-~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~p 349 (440)
T KOG0302|consen 295 ------------------------AV-STKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAP 349 (440)
T ss_pred ------------------------ee-EeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCC
Confidence 11 125688999999999988899999999 9999999998888899999999999
Q ss_pred eEEEEEeCC-CCEEEEEEcCCeEEEEECCCCcE-----------------EEEccc--CCCeEEEEEeCCC-CEEEEEeC
Q 002519 847 FHSCVFHPT-YPSLLVIGCYQSLELWNMSENKT-----------------MTLTAH--EGLIAALAVSTET-GYVASASH 905 (913)
Q Consensus 847 i~~l~~sp~-g~~l~s~s~dg~I~iwd~~~~~~-----------------~~~~~h--~~~V~~l~~spdg-~~Lasgs~ 905 (913)
|+++.|+|. ...|++++.|..|.|||+....- ..+.-| ...|..+.|++.- .+|++.+.
T Consensus 350 ItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~ 429 (440)
T KOG0302|consen 350 ITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAI 429 (440)
T ss_pred eeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecc
Confidence 999999995 45688888999999999864321 023334 3468888998743 48888888
Q ss_pred CCcEEEe
Q 002519 906 DKFVKLW 912 (913)
Q Consensus 906 DG~I~IW 912 (913)
|| +.||
T Consensus 430 dG-fnVf 435 (440)
T KOG0302|consen 430 DG-FNVF 435 (440)
T ss_pred cc-eeEE
Confidence 98 5555
No 137
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=2.5e-20 Score=198.89 Aligned_cols=256 Identities=15% Similarity=0.220 Sum_probs=202.1
Q ss_pred EeCC-CcEEEEECCCCceeeEeccCC-CCeEEEEECCCCCEEEEEeC-CCeEEEEEcCCCCceeEEeccCCCCeEEEEEc
Q 002519 651 GGHD-KKAVLWHTDTLKSKTNLEEHS-SLITDVRFSPSMPRLATSSF-DKTVRVWDADNPGYSLRTFMGHSASVMSLDFH 727 (913)
Q Consensus 651 gs~D-g~V~vwd~~~~~~~~~l~~h~-~~V~~l~fspdg~~Lasgs~-Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fs 727 (913)
++.| .++.+||+.+|....++++.. ..-.++..- .+.+++++.. ...|.+|.+....... ...-..+.|.++.-+
T Consensus 13 sS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~~~-q~~v~Pg~v~al~s~ 90 (476)
T KOG0646|consen 13 SSFDPINCIVWDLRTGTSLLQYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQVV-QYIVLPGPVHALASS 90 (476)
T ss_pred cCCCCcceeEEecCCCceeEEecCcccccchhhhhh-chhheeeecccCccccccccCchhhhh-hhcccccceeeeecC
Confidence 3444 459999999999999988752 211112111 2356666654 5579999997633322 333456889999999
Q ss_pred CCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeC---CceEEEEecCCCEEEEEEcCCeEEEEECC---------CCeEEEE
Q 002519 728 PNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAAENVVSILDAE---------TQACRLS 795 (913)
Q Consensus 728 p~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~s~~~~~ll~~~~dg~I~i~D~~---------t~~~~~~ 795 (913)
|+|.+ ++.|...|.|++|.+.+|..+..+.. .++++.|+-++..+++++.||.|.+|++. +-++++.
T Consensus 91 n~G~~-l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~ 169 (476)
T KOG0646|consen 91 NLGYF-LLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHI 169 (476)
T ss_pred CCceE-EEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceee
Confidence 99764 44666899999999999998887765 46889999999999999999999999653 3478889
Q ss_pred ecCCCCCeEEEEEcCCC--CEEEEEeCC-eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEE
Q 002519 796 LQGHTKPIDSVCWDPSG--ELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWN 872 (913)
Q Consensus 796 l~~h~~~V~sl~~spdg--~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd 872 (913)
+..|.-+|+.+...+.| .+|++++.| ++++||+..+ ..+..+.. ...+.+|+.+|.++.+++|+.+|.|.+.+
T Consensus 170 f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g---~LLlti~f-p~si~av~lDpae~~~yiGt~~G~I~~~~ 245 (476)
T KOG0646|consen 170 FSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLG---VLLLTITF-PSSIKAVALDPAERVVYIGTEEGKIFQNL 245 (476)
T ss_pred eccCcceeEEEEecCCCccceEEEecCCceEEEEEeccc---eeeEEEec-CCcceeEEEcccccEEEecCCcceEEeee
Confidence 99999999999988764 489999999 9999999877 44444433 67899999999999999999999999887
Q ss_pred CCCCc-----------------EEEEcccCC--CeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 002519 873 MSENK-----------------TMTLTAHEG--LIAALAVSTETGYVASASHDKFVKLWK 913 (913)
Q Consensus 873 ~~~~~-----------------~~~~~~h~~--~V~~l~~spdg~~Lasgs~DG~I~IWd 913 (913)
+.... ...+.+|.+ .|+|++++-||.+|++|+.||.|+|||
T Consensus 246 ~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWd 305 (476)
T KOG0646|consen 246 LFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWD 305 (476)
T ss_pred hhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEe
Confidence 64322 125678888 999999999999999999999999997
No 138
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=3.9e-20 Score=211.26 Aligned_cols=239 Identities=17% Similarity=0.255 Sum_probs=200.8
Q ss_pred ccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCC
Q 002519 672 EEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG 751 (913)
Q Consensus 672 ~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~ 751 (913)
..|....+.|+|.++|+.|++|+.||.|++|+..+....-.++..+...|.+++.... .|++|+.+++|.+|.+.++
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~---~f~~~s~~~tv~~y~fps~ 86 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSN---HFLTGSEQNTVLRYKFPSG 86 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeeccc---ceEEeeccceEEEeeCCCC
Confidence 3688889999999999999999999999999987743334444447788888877533 5669999999999999876
Q ss_pred e---eeEEeeCCceEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEE
Q 002519 752 S---CTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWT 827 (913)
Q Consensus 752 ~---~~~~~~~~~~~v~~s~~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwd 827 (913)
. .+..|......++|+.+|.++++|+.|-.|++.+..+....+.+++|+.+|.+|.|+|.+++||+.+.| .|+|||
T Consensus 87 ~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~ 166 (933)
T KOG1274|consen 87 EEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWD 166 (933)
T ss_pred CccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEE
Confidence 4 567778889999999999999999999999999999999999999999999999999999999999888 999999
Q ss_pred CCCCCCCceEEEee----cC-CCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE---EEcccCCCeEEEEEeCCCCE
Q 002519 828 VGSGSEGECVHELS----CN-GNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM---TLTAHEGLIAALAVSTETGY 899 (913)
Q Consensus 828 l~~~~~~~~i~~~~----~~-~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~---~~~~h~~~V~~l~~spdg~~ 899 (913)
+.++.....+..+. .. ...+..++|+|++..+++.+.|+.|++|+..+.... ....+...+.++.|+|+|+|
T Consensus 167 ~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~Y 246 (933)
T KOG1274|consen 167 LQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKY 246 (933)
T ss_pred cccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcE
Confidence 98763322221111 11 344677899999999999999999999999988765 23345556999999999999
Q ss_pred EEEEeCCCcEEEeC
Q 002519 900 VASASHDKFVKLWK 913 (913)
Q Consensus 900 Lasgs~DG~I~IWd 913 (913)
||+++.||.|.|||
T Consensus 247 iAAs~~~g~I~vWn 260 (933)
T KOG1274|consen 247 IAASTLDGQILVWN 260 (933)
T ss_pred EeeeccCCcEEEEe
Confidence 99999999999997
No 139
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.86 E-value=1.2e-20 Score=201.23 Aligned_cols=257 Identities=17% Similarity=0.250 Sum_probs=202.2
Q ss_pred CEEEEEEecCCC-EEEEEeCCCcEEEEECCC--CceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCcee
Q 002519 635 KVICCHFSSDGK-LLATGGHDKKAVLWHTDT--LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSL 711 (913)
Q Consensus 635 ~V~~l~fspdg~-~Lasgs~Dg~V~vwd~~~--~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~ 711 (913)
.|..++|+.... .+|+.+.|+.|++|.-.. ++....-+.....-.||+......|+++|+..+.|+|||++. +.+.
T Consensus 36 g~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~-kl~h 114 (673)
T KOG4378|consen 36 GDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACASQSLYEISGGQSGCVKIWDLRA-KLIH 114 (673)
T ss_pred cceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccchHHHHhhhhcceeeeccCcCceeeehhhHH-HHHh
Confidence 389999988663 334455788999997542 222222222222444555555558999999999999999996 7888
Q ss_pred EEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeCC----ceEEEEecCCCEEEE-EEcCCeEEEEE
Q 002519 712 RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG----TAQMRFQPHLGRYLA-AAAENVVSILD 786 (913)
Q Consensus 712 ~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~----~~~v~~s~~~~~ll~-~~~dg~I~i~D 786 (913)
+.+++|...|+++.|+-.+. +|++++..|.|.|..+.++.....|..+ +.-+.|++....+++ ++.+|.|.+||
T Consensus 115 r~lkdh~stvt~v~YN~~De-yiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwD 193 (673)
T KOG4378|consen 115 RFLKDHQSTVTYVDYNNTDE-YIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWD 193 (673)
T ss_pred hhccCCcceeEEEEecCCcc-eeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEe
Confidence 99999999999999987644 6779999999999999998877777654 235778888877665 45579999999
Q ss_pred CCCCeEEEEe-cCCCCCeEEEEEcCCCC-EEEEEeCC-eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEEEE
Q 002519 787 AETQACRLSL-QGHTKPIDSVCWDPSGE-LLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIG 863 (913)
Q Consensus 787 ~~t~~~~~~l-~~h~~~V~sl~~spdg~-~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s 863 (913)
+....+++.+ +.|..+...|||+|... +|++.+.| .|.+||++......++.. ..++..++|.++|.+|++|.
T Consensus 194 v~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y----~~Plstvaf~~~G~~L~aG~ 269 (673)
T KOG4378|consen 194 VQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTY----SHPLSTVAFSECGTYLCAGN 269 (673)
T ss_pred ccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeee----cCCcceeeecCCceEEEeec
Confidence 9988776654 56999999999999665 88899999 999999987644444432 67899999999999999999
Q ss_pred cCCeEEEEECCCCcE--EEEcccCCCeEEEEEeCCC
Q 002519 864 CYQSLELWNMSENKT--MTLTAHEGLIAALAVSTET 897 (913)
Q Consensus 864 ~dg~I~iwd~~~~~~--~~~~~h~~~V~~l~~spdg 897 (913)
..|.|..||++..+. ..+.+|+..|++++|-+.-
T Consensus 270 s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 270 SKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred CCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence 999999999987653 3788999999999997764
No 140
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=1.7e-20 Score=198.96 Aligned_cols=241 Identities=22% Similarity=0.420 Sum_probs=190.2
Q ss_pred EEEEEec-------CCCEEEEEeCCCcEEEEECCC---CceeeE------------------eccCCCCeEEEEECCCC-
Q 002519 637 ICCHFSS-------DGKLLATGGHDKKAVLWHTDT---LKSKTN------------------LEEHSSLITDVRFSPSM- 687 (913)
Q Consensus 637 ~~l~fsp-------dg~~Lasgs~Dg~V~vwd~~~---~~~~~~------------------l~~h~~~V~~l~fspdg- 687 (913)
.|++|.. .|+|+|.|+.|..|.|||++- -.+..+ -.+|+..|.++.|+..-
T Consensus 177 LC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~ 256 (463)
T KOG0270|consen 177 LCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFR 256 (463)
T ss_pred hhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccc
Confidence 5777743 357999999999999999861 111111 22689999999998764
Q ss_pred CEEEEEeCCCeEEEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCC---CeeeEEeeCCceEE
Q 002519 688 PRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN---GSCTRVFKGGTAQM 764 (913)
Q Consensus 688 ~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~---~~~~~~~~~~~~~v 764 (913)
..||+||.|.+|++||+.+ +.+..++..|...|.++.|+|....++++|+.|++|.+.|.+. ......+.+.+..+
T Consensus 257 nVLaSgsaD~TV~lWD~~~-g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv 335 (463)
T KOG0270|consen 257 NVLASGSADKTVKLWDVDT-GKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKV 335 (463)
T ss_pred eeEEecCCCceEEEEEcCC-CCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEE
Confidence 4789999999999999998 8888999999999999999999999999999999999999994 34456678889999
Q ss_pred EEecCCC-EEEEEEcCCeEEEEECCCC-eEEEEecCCCCCeEEEEEcCCCC-EEEEEeCC-eEEEEECCCCCCCceEEEe
Q 002519 765 RFQPHLG-RYLAAAAENVVSILDAETQ-ACRLSLQGHTKPIDSVCWDPSGE-LLASVSED-SVRVWTVGSGSEGECVHEL 840 (913)
Q Consensus 765 ~~s~~~~-~ll~~~~dg~I~i~D~~t~-~~~~~l~~h~~~V~sl~~spdg~-~l~s~s~d-~I~vwdl~~~~~~~~i~~~ 840 (913)
.|.+... .++++..||+|+-+|+|.. ++++++..|...|.+|+++..-. ++++++.+ .|++|++.... .+.+...
T Consensus 336 ~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~-~~~v~~~ 414 (463)
T KOG0270|consen 336 AWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDS-PKSVKEH 414 (463)
T ss_pred EecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCC-Ccccccc
Confidence 9999875 4566667899999999986 99999999999999999998655 78888888 99999996432 2223222
Q ss_pred ecCCCceEEEEEeCCCCE-EEEEEcCCeEEEEECCCCcEE
Q 002519 841 SCNGNKFHSCVFHPTYPS-LLVIGCYQSLELWNMSENKTM 879 (913)
Q Consensus 841 ~~~~~~i~~l~~sp~g~~-l~s~s~dg~I~iwd~~~~~~~ 879 (913)
...-+...|.++.|+-.+ +++|+..+.++|||+.+...+
T Consensus 415 ~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 415 SFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred cccccceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence 222334666777787665 455566668999999876543
No 141
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.86 E-value=6.8e-22 Score=219.71 Aligned_cols=198 Identities=23% Similarity=0.381 Sum_probs=181.6
Q ss_pred eeeEeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEc
Q 002519 625 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDA 704 (913)
Q Consensus 625 ~~~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl 704 (913)
.+..|.+|...|.||.|+.+..+|++|+.+|+|+|||++..+.++++.+|...|.+|.|+|-+.+++.|+.|+.+++||+
T Consensus 62 ~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~ 141 (825)
T KOG0267|consen 62 AITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDI 141 (825)
T ss_pred hhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhh
Confidence 34458999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEee---CCceEEEEecCCCEEEEEEcCCe
Q 002519 705 DNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQMRFQPHLGRYLAAAAENV 781 (913)
Q Consensus 705 ~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~---~~~~~v~~s~~~~~ll~~~~dg~ 781 (913)
+. ..+...+.+|...|.++.|+|+|. +++++++|.+|+|||+..|+....|+ +.+..+.|+|..-.+..|+.|++
T Consensus 142 Rk-~Gc~~~~~s~~~vv~~l~lsP~Gr-~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~t 219 (825)
T KOG0267|consen 142 RK-KGCSHTYKSHTRVVDVLRLSPDGR-WVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRT 219 (825)
T ss_pred hc-cCceeeecCCcceeEEEeecCCCc-eeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCce
Confidence 97 668899999999999999999977 56699999999999999999998888 55667788998888888899999
Q ss_pred EEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEE
Q 002519 782 VSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVR 824 (913)
Q Consensus 782 I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d~I~ 824 (913)
|++||+++.+.+...+.....|.+++|+++++.+++|....++
T Consensus 220 v~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~sl~ 262 (825)
T KOG0267|consen 220 VRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQISLS 262 (825)
T ss_pred eeeeccceeEEeeccCCccCCceeeeecCCceeeecCchhhhh
Confidence 9999999999998888888899999999999999988877544
No 142
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=5e-21 Score=223.75 Aligned_cols=242 Identities=19% Similarity=0.362 Sum_probs=201.9
Q ss_pred CCCEEEEEEecCCCE----EEEEeCCCcEEEEECCC------CceeeEeccCCCCeEEEEECCCCC-EEEEEeCCCeEEE
Q 002519 633 TSKVICCHFSSDGKL----LATGGHDKKAVLWHTDT------LKSKTNLEEHSSLITDVRFSPSMP-RLATSSFDKTVRV 701 (913)
Q Consensus 633 ~~~V~~l~fspdg~~----Lasgs~Dg~V~vwd~~~------~~~~~~l~~h~~~V~~l~fspdg~-~Lasgs~Dg~V~I 701 (913)
..+.++++|.+.|.. ||.|..||.|.+||... ...+.++..|++.|..|.|++... +||+|+.||.|.|
T Consensus 64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~i 143 (1049)
T KOG0307|consen 64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILI 143 (1049)
T ss_pred cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEE
Confidence 456789999987764 89999999999999864 245567788999999999999866 9999999999999
Q ss_pred EEcCCCCceeEE-eccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeC-----CceEEEEecCCC-EEE
Q 002519 702 WDADNPGYSLRT-FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG-----GTAQMRFQPHLG-RYL 774 (913)
Q Consensus 702 wdl~~~~~~~~~-~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~-----~~~~v~~s~~~~-~ll 774 (913)
||+.+....... -....+.|.+|+|+..-.++|++++.+|.+.|||++..+.+-.+.. +...+.|+|+.. .++
T Consensus 144 WDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~ 223 (1049)
T KOG0307|consen 144 WDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLL 223 (1049)
T ss_pred eccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeee
Confidence 999874433332 2235678999999998889999999999999999999877766543 345789999985 455
Q ss_pred EEEcCC---eEEEEECCCC-eEEEEecCCCCCeEEEEEcCCC-CEEEEEeCC-eEEEEECCCCCCCceEEEeecCCCceE
Q 002519 775 AAAAEN---VVSILDAETQ-ACRLSLQGHTKPIDSVCWDPSG-ELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFH 848 (913)
Q Consensus 775 ~~~~dg---~I~i~D~~t~-~~~~~l~~h~~~V~sl~~spdg-~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~ 848 (913)
+++.|. .|.+||+|.- .++.++.+|...|.++.|++.+ ++|++++.| .|.+|+.+++ +.+.++....+++.
T Consensus 224 ~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tg---Evl~~~p~~~nW~f 300 (1049)
T KOG0307|consen 224 VASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTG---EVLGELPAQGNWCF 300 (1049)
T ss_pred eecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCc---eEeeecCCCCccee
Confidence 555543 8999999875 6777888999999999999966 799999999 9999999887 78888888889999
Q ss_pred EEEEeCCCC-EEEEEEcCCeEEEEECCCCc
Q 002519 849 SCVFHPTYP-SLLVIGCYQSLELWNMSENK 877 (913)
Q Consensus 849 ~l~~sp~g~-~l~s~s~dg~I~iwd~~~~~ 877 (913)
.+.|+|... .|++.+.||.|.||.+.+..
T Consensus 301 dv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 301 DVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred eeeecCCCcchhhhheeccceeeeeeecCC
Confidence 999999887 78888999999999987665
No 143
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=4.3e-20 Score=191.70 Aligned_cols=315 Identities=18% Similarity=0.225 Sum_probs=227.7
Q ss_pred CceeeecccCCCCCCCCCCcccccccCccceeeeEeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCC------Cce
Q 002519 594 DNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT------LKS 667 (913)
Q Consensus 594 ~~v~~~~~~d~~~~~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~------~~~ 667 (913)
-+|+.|++.....+.....+.+.....-.--+.+.+.+|.+.|.+|.||.++.+||+|+.|..++||+++. .+.
T Consensus 17 ~~i~~FL~QR~i~~~~~~~k~F~~~~~~R~~~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KP 96 (609)
T KOG4227|consen 17 FKIESFLCQREIGSVKSVVKTFRPDFQHRPFCQKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKP 96 (609)
T ss_pred ceeeeeeeecccCCChhhhhhhchhhhhcchhhhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCC
Confidence 35677777665555444444333322222234556789999999999999999999999999999999863 234
Q ss_pred eeEec-cCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCceeEEec--cCCCCeEEEEEcCCCCeEEEEEeCCCcEE
Q 002519 668 KTNLE-EHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFM--GHSASVMSLDFHPNKDDLICSCDGDGEIR 744 (913)
Q Consensus 668 ~~~l~-~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~--~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~ 744 (913)
+.... .|...|.|++|....+.|++|..+++|.+.|+++ ...+..+. ...+.|+.+..+|.. ++|++.+.++.|.
T Consensus 97 I~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt-~qsi~V~~~~~~~~~VY~m~~~P~D-N~~~~~t~~~~V~ 174 (609)
T KOG4227|consen 97 IGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIET-KQSIYVANENNNRGDVYHMDQHPTD-NTLIVVTRAKLVS 174 (609)
T ss_pred ceeccCccccceEEEEEccCCeeEecCCCcceeEeeeccc-ceeeeeecccCcccceeecccCCCC-ceEEEEecCceEE
Confidence 44333 3568999999999999999999999999999998 55555554 233589999999984 4666889999999
Q ss_pred EEEcCCCe------eeEEeeCCceEEEEecCCCEEEEE-EcCCeEEEEECCCCe-EEEEec---C---CCCCeEEEEEcC
Q 002519 745 YWSINNGS------CTRVFKGGTAQMRFQPHLGRYLAA-AAENVVSILDAETQA-CRLSLQ---G---HTKPIDSVCWDP 810 (913)
Q Consensus 745 iwdl~~~~------~~~~~~~~~~~v~~s~~~~~ll~~-~~dg~I~i~D~~t~~-~~~~l~---~---h~~~V~sl~~sp 810 (913)
+||++... |...+......+.|+|....++++ ...+.+-+||.+... .+.... + ......++.|+|
T Consensus 175 ~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~ 254 (609)
T KOG4227|consen 175 FIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSP 254 (609)
T ss_pred EEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCC
Confidence 99998754 222223345668899988766554 557889999998753 222211 1 122346788999
Q ss_pred CCCEEEEEeCC-eEEEEECCCCCCCceEEEeec------CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC--------
Q 002519 811 SGELLASVSED-SVRVWTVGSGSEGECVHELSC------NGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSE-------- 875 (913)
Q Consensus 811 dg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~------~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~-------- 875 (913)
+|..|.+.-.+ .-.+||+.+.. ..+..+.. ....+.+|+|..+.. |++|+.+-.|++|.+..
T Consensus 255 ~G~Q~msiRR~~~P~~~D~~S~R--~~V~k~D~N~~GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~WklP~~~ds~G~~ 331 (609)
T KOG4227|consen 255 SGNQFMSIRRGKCPLYFDFISQR--CFVLKSDHNPNGYCNIKTIKSMTFIDDYT-VATGSDHWGIHIWKLPRANDSYGFT 331 (609)
T ss_pred CCCeehhhhccCCCEEeeeeccc--ceeEeccCCCCcceeeeeeeeeeeeccee-eeccCcccceEEEecCCCccccCcc
Confidence 99988877777 67788886531 12222221 122466778877765 88888888999998742
Q ss_pred ----------------CcEEEEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 002519 876 ----------------NKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 913 (913)
Q Consensus 876 ----------------~~~~~~~~h~~~V~~l~~spdg~~Lasgs~DG~I~IWd 913 (913)
+....+.+|.+.++.+.|++...+|++.+..+.|+||-
T Consensus 332 ~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS 385 (609)
T KOG4227|consen 332 QIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWS 385 (609)
T ss_pred ccCcchhhCchhheecceeEEEecccccccceeecCCcceEeccchhhheeccc
Confidence 12336789999999999999999999999999999993
No 144
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.85 E-value=8.8e-20 Score=186.69 Aligned_cols=288 Identities=19% Similarity=0.351 Sum_probs=219.6
Q ss_pred cceeeeEe-ecCCCCEEEEEEec-----CCCEEEEEeCCCcEEEEECCCCc---eeeEec--cCCCCeEEEEECCC----
Q 002519 622 SFKEANSV-RASTSKVICCHFSS-----DGKLLATGGHDKKAVLWHTDTLK---SKTNLE--EHSSLITDVRFSPS---- 686 (913)
Q Consensus 622 ~~~~~~~l-~~H~~~V~~l~fsp-----dg~~Lasgs~Dg~V~vwd~~~~~---~~~~l~--~h~~~V~~l~fspd---- 686 (913)
.++....+ +.|+.+|..++|+. ....+|+++ ...|.||.....- .+..+. .|......++|+-|
T Consensus 26 ~yk~t~~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG-~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~ 104 (385)
T KOG1034|consen 26 SYKYTNHLKEDHNKPIFGVAFNSFLGCDEPQVFATVG-GNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTG 104 (385)
T ss_pred ceEeeeehhccCCCccceeeeehhcCCCCCceEEEeC-CcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCC
Confidence 55555555 46889999999984 224666665 4578888776322 222222 36777888888764
Q ss_pred CCEEEEEeCCCeEEEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeC------C
Q 002519 687 MPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG------G 760 (913)
Q Consensus 687 g~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~------~ 760 (913)
..+||.++.-|.|||.|+.+ +.+...+.+|...|+.|.|+|+...|+++++.|-.||+|++.+..|+..|.+ +
T Consensus 105 ~p~la~~G~~GvIrVid~~~-~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrde 183 (385)
T KOG1034|consen 105 NPFLAAGGYLGVIRVIDVVS-GQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDE 183 (385)
T ss_pred CeeEEeecceeEEEEEecch-hhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCc
Confidence 34789999999999999998 7888999999999999999999999999999999999999999999998854 5
Q ss_pred ceEEEEecCCCEEEEEEcCCeEEEEECCCCe------EE---------------------E-EecCCCCCeEEEEEcCCC
Q 002519 761 TAQMRFQPHLGRYLAAAAENVVSILDAETQA------CR---------------------L-SLQGHTKPIDSVCWDPSG 812 (913)
Q Consensus 761 ~~~v~~s~~~~~ll~~~~dg~I~i~D~~t~~------~~---------------------~-~l~~h~~~V~sl~~spdg 812 (913)
+.++.|+.++.++++++.|..|.+|++...+ +. + +...|...|.|+.|- |
T Consensus 184 VLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--g 261 (385)
T KOG1034|consen 184 VLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--G 261 (385)
T ss_pred EEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--h
Confidence 6789999999999999999999999997321 11 0 122366677777775 5
Q ss_pred CEEEEEeCC-eEEEEECCCC-----------CCCceEEEeecCCCceE--EEEEeCCCCEEEEEEcCCeEEEEECCCCcE
Q 002519 813 ELLASVSED-SVRVWTVGSG-----------SEGECVHELSCNGNKFH--SCVFHPTYPSLLVIGCYQSLELWNMSENKT 878 (913)
Q Consensus 813 ~~l~s~s~d-~I~vwdl~~~-----------~~~~~i~~~~~~~~~i~--~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~ 878 (913)
+++++-+-+ .|..|....- .....+.+++.....|+ ..+|.+-.+.|+.|...|.|++||++..+.
T Consensus 262 d~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep 341 (385)
T KOG1034|consen 262 DFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEP 341 (385)
T ss_pred hheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCC
Confidence 788887776 9999987211 11123344443343444 445677789999999999999999987765
Q ss_pred E-----EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 002519 879 M-----TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 913 (913)
Q Consensus 879 ~-----~~~~h~~~V~~l~~spdg~~Lasgs~DG~I~IWd 913 (913)
. ........|...+|+.|+.+|+..++|++|.-||
T Consensus 342 ~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwd 381 (385)
T KOG1034|consen 342 PKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWD 381 (385)
T ss_pred ccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEE
Confidence 3 2233456899999999999999999999999886
No 145
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=3.8e-21 Score=224.77 Aligned_cols=274 Identities=19% Similarity=0.282 Sum_probs=216.3
Q ss_pred EEEEEEecCCC-EEEEEe----------CCCcEEEEECCCCc------eeeEeccCCCCeEEEEECCCCCE----EEEEe
Q 002519 636 VICCHFSSDGK-LLATGG----------HDKKAVLWHTDTLK------SKTNLEEHSSLITDVRFSPSMPR----LATSS 694 (913)
Q Consensus 636 V~~l~fspdg~-~Lasgs----------~Dg~V~vwd~~~~~------~~~~l~~h~~~V~~l~fspdg~~----Lasgs 694 (913)
--.++|+|++. +||+|. .+.++-||.++... .+..+. -....++|+|.+.+.. ||.|.
T Consensus 9 ta~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~-s~~rF~kL~W~~~g~~~~GlIaGG~ 87 (1049)
T KOG0307|consen 9 TATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQ-SSNRFNKLAWGSYGSHSHGLIAGGL 87 (1049)
T ss_pred cceEEecCCCchhhHHHhhhhccccccccccccceeeecccCcccccccccccc-ccccceeeeecccCCCccceeeccc
Confidence 34578999886 566543 34566677654222 222222 3456889999987765 88889
Q ss_pred CCCeEEEEEcCCC-----CceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEe-----eCCceEE
Q 002519 695 FDKTVRVWDADNP-----GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF-----KGGTAQM 764 (913)
Q Consensus 695 ~Dg~V~Iwdl~~~-----~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~-----~~~~~~v 764 (913)
+||.|.+||.... ...+..+..|.+.|..++|++..++++++|++||.|.|||+++.+.-..+ ...+.++
T Consensus 88 edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~l 167 (1049)
T KOG0307|consen 88 EDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCL 167 (1049)
T ss_pred cCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEe
Confidence 9999999998751 23456777899999999999999999999999999999999875543333 3467788
Q ss_pred EEecCCCEEEEEEc-CCeEEEEECCCCeEEEEecCCCC--CeEEEEEcCCCC-EEEEEeCC----eEEEEECCCCCCCce
Q 002519 765 RFQPHLGRYLAAAA-ENVVSILDAETQACRLSLQGHTK--PIDSVCWDPSGE-LLASVSED----SVRVWTVGSGSEGEC 836 (913)
Q Consensus 765 ~~s~~~~~ll~~~~-dg~I~i~D~~t~~~~~~l~~h~~--~V~sl~~spdg~-~l~s~s~d----~I~vwdl~~~~~~~~ 836 (913)
+|......+++.+. +|.+.|||++..+.+..+..+.. .+..|.|+|+.. .|+++++| .|.+||+|... ..
T Consensus 168 sWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~as--sP 245 (1049)
T KOG0307|consen 168 SWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFAS--SP 245 (1049)
T ss_pred ccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccC--Cc
Confidence 88887776666554 67999999999988888876655 477899999876 45555544 79999998653 56
Q ss_pred EEEeecCCCceEEEEEeCCC-CEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCC-EEEEEeCCCcEEEe
Q 002519 837 VHELSCNGNKFHSCVFHPTY-PSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETG-YVASASHDKFVKLW 912 (913)
Q Consensus 837 i~~~~~~~~~i~~l~~sp~g-~~l~s~s~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~-~Lasgs~DG~I~IW 912 (913)
++++.+|...|.++.|++.+ .++++++.|+.|.+|+.++++.+ .+.....++..+.|+|..- .|+.++.||.|.||
T Consensus 246 ~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~ 324 (1049)
T KOG0307|consen 246 LKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIY 324 (1049)
T ss_pred hhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeee
Confidence 67778999999999999977 88999999999999999999998 7777889999999999776 78888999999987
No 146
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=1.4e-19 Score=184.01 Aligned_cols=242 Identities=17% Similarity=0.238 Sum_probs=180.5
Q ss_pred eeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCC----ceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcE
Q 002519 668 KTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG----YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEI 743 (913)
Q Consensus 668 ~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~----~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I 743 (913)
+..+++|.+.|++++|+.||++|+|++.|++||||+++.-. ++++.-. .-+.-+.+.|.||-+.+++++-...++
T Consensus 79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nv-e~dhpT~V~FapDc~s~vv~~~~g~~l 157 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNV-EYDHPTRVVFAPDCKSVVVSVKRGNKL 157 (420)
T ss_pred hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccc-cCCCceEEEECCCcceEEEEEccCCEE
Confidence 34578999999999999999999999999999999998521 1222211 122456799999999999999889999
Q ss_pred EEEEcCCCee---eEE--------e----eCCceEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEE
Q 002519 744 RYWSINNGSC---TRV--------F----KGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCW 808 (913)
Q Consensus 744 ~iwdl~~~~~---~~~--------~----~~~~~~v~~s~~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~ 808 (913)
++|.+...+. ... | ...+..+-....+.++++++.|..|.+||++ |..+..+......-+..+.
T Consensus 158 ~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aav 236 (420)
T KOG2096|consen 158 CVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAV 236 (420)
T ss_pred EEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeeccccccccceee
Confidence 9998754321 100 1 1122233444555678888889999999999 8888888776667778899
Q ss_pred cCCCCEEEEEeCC-eEEEEECCCC-----CCCceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCc-----
Q 002519 809 DPSGELLASVSED-SVRVWTVGSG-----SEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK----- 877 (913)
Q Consensus 809 spdg~~l~s~s~d-~I~vwdl~~~-----~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~----- 877 (913)
+|+|++|++++-- .|+||.+--. .+...+..+++|...|..++|+++.+.+++.+.||+++|||++-.-
T Consensus 237 SP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qD 316 (420)
T KOG2096|consen 237 SPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQD 316 (420)
T ss_pred CCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCC
Confidence 9999999999988 9999997432 2345667889999999999999999999999999999999985321
Q ss_pred --EE-----EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEe
Q 002519 878 --TM-----TLTAHEGLIAALAVSTETGYVASASHDKFVKLW 912 (913)
Q Consensus 878 --~~-----~~~~h~~~V~~l~~spdg~~Lasgs~DG~I~IW 912 (913)
++ .+.+-.+.-..+..+|+|..||.+. ...|++|
T Consensus 317 pk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~ 357 (420)
T KOG2096|consen 317 PKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVF 357 (420)
T ss_pred chHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEE
Confidence 11 1112233444899999999887654 3345554
No 147
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.84 E-value=1.6e-19 Score=197.99 Aligned_cols=269 Identities=17% Similarity=0.281 Sum_probs=212.7
Q ss_pred CEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCceeEEe
Q 002519 635 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTF 714 (913)
Q Consensus 635 ~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~ 714 (913)
.|..++|-|||..|+.+. +..+.|||...|..+.++++|.+.|.|++|+.||+++++|+.|+.|.||.-.-.+ +..+
T Consensus 14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG--~LkY 90 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEG--ILKY 90 (1081)
T ss_pred chheeEECCCCceEEEec-CCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccc--eeee
Confidence 799999999999888775 5579999999999999999999999999999999999999999999999876533 2222
Q ss_pred ccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeE-EeeCCceEEEEecCCCEEEEEEcCCeEEEEECCCCeEE
Q 002519 715 MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR-VFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACR 793 (913)
Q Consensus 715 ~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~-~~~~~~~~v~~s~~~~~ll~~~~dg~I~i~D~~t~~~~ 793 (913)
.|.+.|.|+.|+|-.. .+++|+- ...-+|........+ .....+.+.+|..+|.+++.|-.+|+|.|-+....+.+
T Consensus 91 -SH~D~IQCMsFNP~~h-~LasCsL-sdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~ 167 (1081)
T KOG1538|consen 91 -SHNDAIQCMSFNPITH-QLASCSL-SDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKV 167 (1081)
T ss_pred -ccCCeeeEeecCchHH-Hhhhcch-hhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcce
Confidence 5999999999999865 4547763 456788876544332 22335667889999999999999999999865433332
Q ss_pred EEe--cCCCCCeEEEEEcCCC-----CEEEEEeCC-eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEEEEcC
Q 002519 794 LSL--QGHTKPIDSVCWDPSG-----ELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY 865 (913)
Q Consensus 794 ~~l--~~h~~~V~sl~~spdg-----~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~d 865 (913)
..- .+...+|.+|+|+|.. ..+++...+ ++.+|.+.. ..+..-..-+....|+.+.++|.++++|++|
T Consensus 168 ~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG----~~Igk~r~L~FdP~CisYf~NGEy~LiGGsd 243 (1081)
T KOG1538|consen 168 KIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSG----KQIGKDRALNFDPCCISYFTNGEYILLGGSD 243 (1081)
T ss_pred EEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecc----eeecccccCCCCchhheeccCCcEEEEccCC
Confidence 222 2467889999999953 367777777 788887742 2333222334456788999999999999999
Q ss_pred CeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 002519 866 QSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 913 (913)
Q Consensus 866 g~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~DG~I~IWd 913 (913)
+.+++|..+.-.+-++...+.+|+.++..|++.+++.|+.||+|-.|+
T Consensus 244 k~L~~fTR~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyN 291 (1081)
T KOG1538|consen 244 KQLSLFTRDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYN 291 (1081)
T ss_pred CceEEEeecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhh
Confidence 999999876655557778899999999999999999999999997664
No 148
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.84 E-value=1.2e-19 Score=193.81 Aligned_cols=281 Identities=17% Similarity=0.222 Sum_probs=209.5
Q ss_pred CCeEEeCCCcchhhhcccccccCCccCceeeecccC----CCCCCCCCCcccccccC-ccceeeeEeecCCCCEEEEEEe
Q 002519 568 SNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHD----DTDPRDAGGRGMDVSQG-FSFKEANSVRASTSKVICCHFS 642 (913)
Q Consensus 568 ~~~vWd~~~g~~~~~~~~~~~~g~~d~~v~~~~~~d----~~~~~d~~~~~~~~~~~-~~~~~~~~l~~H~~~V~~l~fs 642 (913)
.++|||..+.+...+.-.... +.......|-... ....+|...+.|+.... ..+..+..+.+. .-.|++..
T Consensus 13 ~~kl~D~s~~~~~~~~~~~t~--~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd--~~~Cv~~~ 88 (673)
T KOG4378|consen 13 KTKLSDFSDLETKSEYVHQTA--EPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGD--NAFCVACA 88 (673)
T ss_pred ceEEeecccccCccccccCCC--CCcceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccc--hHHHHhhh
Confidence 468899888766555433222 2223333332222 12233334444443332 122333333332 45566655
Q ss_pred cCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCceeEEeccC-CCCe
Q 002519 643 SDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGH-SASV 721 (913)
Q Consensus 643 pdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h-~~~V 721 (913)
....|+++|+..++|+|||+....+.+.+++|...|+++.++..+.+||+++..|.|.|..+.+ +.....|... ...|
T Consensus 89 s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t-~~~tt~f~~~sgqsv 167 (673)
T KOG4378|consen 89 SQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKT-KQKTTTFTIDSGQSV 167 (673)
T ss_pred hcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEeccc-CccccceecCCCCeE
Confidence 5568999999999999999998888899999999999999999999999999999999999998 4444555533 4556
Q ss_pred EEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEe----eCCceEEEEecCCCEE-EEEEcCCeEEEEECCCCeEEEEe
Q 002519 722 MSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF----KGGTAQMRFQPHLGRY-LAAAAENVVSILDAETQACRLSL 796 (913)
Q Consensus 722 ~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~----~~~~~~v~~s~~~~~l-l~~~~dg~I~i~D~~t~~~~~~l 796 (913)
.-+.|++..+++|.+++++|.|.+||+.....+..+ ..+...|||+|....+ ++.+.|..|.+||++..+....+
T Consensus 168 Rll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l 247 (673)
T KOG4378|consen 168 RLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRL 247 (673)
T ss_pred EEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeeccccccccee
Confidence 689999999999999999999999999887666543 4566789999988654 55677999999999987766666
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCC
Q 002519 797 QGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTY 856 (913)
Q Consensus 797 ~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g 856 (913)
. ...+...++|.++|.+|++|... .|..||++.. ...+..+..|...|++++|-+.-
T Consensus 248 ~-y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~--k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 248 T-YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRST--KAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred e-ecCCcceeeecCCceEEEeecCCceEEEEecccC--CCCceEeeecccceeEEEeeecc
Confidence 5 46789999999999999999888 9999999865 36677778889999999998764
No 149
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.84 E-value=1.8e-19 Score=181.46 Aligned_cols=206 Identities=20% Similarity=0.333 Sum_probs=165.8
Q ss_pred ccCCCCeEEEEECC-CCCEEEEEeCCCeEEEEEcCCCC------c-----ee---EEeccCCCCeEEEEEcCCCCeEEEE
Q 002519 672 EEHSSLITDVRFSP-SMPRLATSSFDKTVRVWDADNPG------Y-----SL---RTFMGHSASVMSLDFHPNKDDLICS 736 (913)
Q Consensus 672 ~~h~~~V~~l~fsp-dg~~Lasgs~Dg~V~Iwdl~~~~------~-----~~---~~~~~h~~~V~sl~fsp~~~~ll~s 736 (913)
..|.+.|.++...+ .|+++++|+.||.|.|||+.+.. . ++ ..-.+|.-.|.++.|.|-+..+|.+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 35778999999977 48899999999999999998632 0 10 1123688899999999988889989
Q ss_pred EeCCCcEEEEEcCCCeeeEEee--CCceEEEEecCC--CEE-EEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCC
Q 002519 737 CDGDGEIRYWSINNGSCTRVFK--GGTAQMRFQPHL--GRY-LAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPS 811 (913)
Q Consensus 737 gs~Dg~I~iwdl~~~~~~~~~~--~~~~~v~~s~~~--~~l-l~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spd 811 (913)
++.|.++++||.++......|+ +.+..-+++|-. ..+ +++..+-.|++.|+.+|.+.+++.+|...|.++.|+|.
T Consensus 120 sSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~ 199 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPS 199 (397)
T ss_pred ccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccC
Confidence 9999999999999987766654 555666666654 234 44555679999999999999999999999999999998
Q ss_pred CC-EEEEEeCC-eEEEEECCCCC------------CCceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCc
Q 002519 812 GE-LLASVSED-SVRVWTVGSGS------------EGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK 877 (913)
Q Consensus 812 g~-~l~s~s~d-~I~vwdl~~~~------------~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~ 877 (913)
.+ .|++|+.| .|++||++... ....++.-..|.+.|..++|..++.++++++.|..+++|+...|+
T Consensus 200 ~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ 279 (397)
T KOG4283|consen 200 SEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGR 279 (397)
T ss_pred ceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCc
Confidence 88 67788888 99999998541 112222344567789999999999999999999999999998765
No 150
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.84 E-value=1e-19 Score=200.16 Aligned_cols=247 Identities=16% Similarity=0.261 Sum_probs=187.6
Q ss_pred eEeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeE--eccCCCCeEEEEECCCCC-EEEEEeCCCeEEEEE
Q 002519 627 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTN--LEEHSSLITDVRFSPSMP-RLATSSFDKTVRVWD 703 (913)
Q Consensus 627 ~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~--l~~h~~~V~~l~fspdg~-~Lasgs~Dg~V~Iwd 703 (913)
..+..|.+.|.++.|-|....|++++.|.++++||+++.+++.. +.+|...|.+++|.+++. .|++|+.||.|.|||
T Consensus 94 k~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD 173 (720)
T KOG0321|consen 94 KKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWD 173 (720)
T ss_pred cccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEE
Confidence 45668999999999999767999999999999999999888777 899999999999999765 688999999999999
Q ss_pred cCCCCc--------------------------eeEEeccCCCCeEE---EEEcCCCCeEEEEEeC-CCcEEEEEcCCCee
Q 002519 704 ADNPGY--------------------------SLRTFMGHSASVMS---LDFHPNKDDLICSCDG-DGEIRYWSINNGSC 753 (913)
Q Consensus 704 l~~~~~--------------------------~~~~~~~h~~~V~s---l~fsp~~~~ll~sgs~-Dg~I~iwdl~~~~~ 753 (913)
++-.+. .++..+.+...|.+ +.+..|...| ++++. |+.|+|||++...+
T Consensus 174 ~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tl-aSaga~D~~iKVWDLRk~~~ 252 (720)
T KOG0321|consen 174 CRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTL-ASAGAADSTIKVWDLRKNYT 252 (720)
T ss_pred EeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEecccee-eeccCCCcceEEEeeccccc
Confidence 974220 01122234444554 5555565544 46665 99999999997654
Q ss_pred eEEe--------------eCCceEEEEecCCCEEEEEEcCCeEEEEECCCC--eEEEEecCCCCC--eEEEEEcCCCCEE
Q 002519 754 TRVF--------------KGGTAQMRFQPHLGRYLAAAAENVVSILDAETQ--ACRLSLQGHTKP--IDSVCWDPSGELL 815 (913)
Q Consensus 754 ~~~~--------------~~~~~~v~~s~~~~~ll~~~~dg~I~i~D~~t~--~~~~~l~~h~~~--V~sl~~spdg~~l 815 (913)
.... ..+..++.....|.++++.+.|+.|++|++.+. .++..+.++... ...-+.+|++.+|
T Consensus 253 ~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l 332 (720)
T KOG0321|consen 253 AYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSL 332 (720)
T ss_pred ccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceE
Confidence 3321 123456677778899999999999999999875 344445544322 2233578999999
Q ss_pred EEEeCC-eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCC-CEEEEEEcCCeEEEEECCCC
Q 002519 816 ASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTY-PSLLVIGCYQSLELWNMSEN 876 (913)
Q Consensus 816 ~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g-~~l~s~s~dg~I~iwd~~~~ 876 (913)
++|+.| ..++|.+.+.. .....+.+|...|++++|.|.. .-+++++.|..++||++..+
T Consensus 333 ~SgSsd~~ayiw~vs~~e--~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 333 LSGSSDEQAYIWVVSSPE--APPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred eccCCCcceeeeeecCcc--CChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 999999 99999998654 3445567788899999998743 34777799999999999654
No 151
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.84 E-value=1.2e-19 Score=193.07 Aligned_cols=254 Identities=18% Similarity=0.240 Sum_probs=200.7
Q ss_pred EECCCCceeeEeccCCCCeEEEEECCCCC--EEEEEeCCCeEEEEEcCC---CCceeEEeccCCCCeEEEEEcCCCCeEE
Q 002519 660 WHTDTLKSKTNLEEHSSLITDVRFSPSMP--RLATSSFDKTVRVWDADN---PGYSLRTFMGHSASVMSLDFHPNKDDLI 734 (913)
Q Consensus 660 wd~~~~~~~~~l~~h~~~V~~l~fspdg~--~Lasgs~Dg~V~Iwdl~~---~~~~~~~~~~h~~~V~sl~fsp~~~~ll 734 (913)
+|+.+......++.+.+.|++++|+|..+ ++|+|..-|.|-+||+.+ ....+..+..|..+|.+|.|+|.+...|
T Consensus 171 l~l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i 250 (498)
T KOG4328|consen 171 LDLDDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQI 250 (498)
T ss_pred cccccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhhe
Confidence 44455566667778899999999999754 788888899999999952 2345677889999999999999888888
Q ss_pred EEEeCCCcEEEEEcCCCeeeEEeeC-----CceEEEEecCCCEEEEEEcCCeEEEEECCCCeE-EEEecCCCCCeEEEEE
Q 002519 735 CSCDGDGEIRYWSINNGSCTRVFKG-----GTAQMRFQPHLGRYLAAAAENVVSILDAETQAC-RLSLQGHTKPIDSVCW 808 (913)
Q Consensus 735 ~sgs~Dg~I~iwdl~~~~~~~~~~~-----~~~~v~~s~~~~~ll~~~~dg~I~i~D~~t~~~-~~~l~~h~~~V~sl~~ 808 (913)
++.+.||+|++-|+++......+.. ....+.|+.+...++++..-|.+.+||.+++.. ...+.-|...|++|++
T Consensus 251 ~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~ 330 (498)
T KOG4328|consen 251 YSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVAL 330 (498)
T ss_pred eeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeec
Confidence 8999999999999998754333322 234456777778888888888999999999855 6667779999999999
Q ss_pred cCCCC-EEEEEeCC-eEEEEECCCCCCCc-eEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECC----CCcEEEE
Q 002519 809 DPSGE-LLASVSED-SVRVWTVGSGSEGE-CVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMS----ENKTMTL 881 (913)
Q Consensus 809 spdg~-~l~s~s~d-~I~vwdl~~~~~~~-~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~----~~~~~~~ 881 (913)
+|-.. +|++++.| +++|||++.-.... .+.....|...|.++.|+|.+..|++.+.|..|+|||.. .......
T Consensus 331 NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~ 410 (498)
T KOG4328|consen 331 NPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGT 410 (498)
T ss_pred CCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccce
Confidence 99766 88999999 99999998764433 345555678899999999999889999999999999984 2222233
Q ss_pred cccC----C--CeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 002519 882 TAHE----G--LIAALAVSTETGYVASASHDKFVKLWK 913 (913)
Q Consensus 882 ~~h~----~--~V~~l~~spdg~~Lasgs~DG~I~IWd 913 (913)
..|. . ......|.|+..+|++|..-..|-|||
T Consensus 411 I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~ 448 (498)
T KOG4328|consen 411 IPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFD 448 (498)
T ss_pred eeccCcccccccchhheeCCCccEEEEeccCcceeEEc
Confidence 3332 2 234568999999999999888888875
No 152
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.84 E-value=4.1e-19 Score=181.22 Aligned_cols=268 Identities=18% Similarity=0.272 Sum_probs=205.1
Q ss_pred CCEEEEEEecCCCEEEEEeCCCcEEEEECCC-----C-------ceeeEec-cCCCCeEEEEEC-------CCCCEEEEE
Q 002519 634 SKVICCHFSSDGKLLATGGHDKKAVLWHTDT-----L-------KSKTNLE-EHSSLITDVRFS-------PSMPRLATS 693 (913)
Q Consensus 634 ~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~-----~-------~~~~~l~-~h~~~V~~l~fs-------pdg~~Lasg 693 (913)
.-...+.|+|||..|++-+.|..+.+|++.. . +...+++ .....|...+|- |+..++++.
T Consensus 50 nf~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~s 129 (406)
T KOG2919|consen 50 NFLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVS 129 (406)
T ss_pred hhhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeec
Confidence 3456789999999999999999999998752 1 1111122 134568888885 577799999
Q ss_pred eCCCeEEEEEcCCCCceeEEecc--CCC---CeEEEEEcCCCCeEEEEEeCCCcEEEEEc-CCCeeeEEe----------
Q 002519 694 SFDKTVRVWDADNPGYSLRTFMG--HSA---SVMSLDFHPNKDDLICSCDGDGEIRYWSI-NNGSCTRVF---------- 757 (913)
Q Consensus 694 s~Dg~V~Iwdl~~~~~~~~~~~~--h~~---~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl-~~~~~~~~~---------- 757 (913)
+.|.-|.+||.-+ ++....+.+ |-+ ...+++|+|||..|+ ++...+|++||+ +.|.....+
T Consensus 130 sr~~PIh~wdaft-G~lraSy~~ydh~de~taAhsL~Fs~DGeqlf--aGykrcirvFdt~RpGr~c~vy~t~~~~k~gq 206 (406)
T KOG2919|consen 130 SRDQPIHLWDAFT-GKLRASYRAYDHQDEYTAAHSLQFSPDGEQLF--AGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQ 206 (406)
T ss_pred cccCceeeeeccc-cccccchhhhhhHHhhhhheeEEecCCCCeEe--ecccceEEEeeccCCCCCCcchhhhhcccccc
Confidence 9999999999988 555544442 333 345799999999776 566899999999 555432221
Q ss_pred eCCceEEEEecCCC-EEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC--eEEEEECCCCCCC
Q 002519 758 KGGTAQMRFQPHLG-RYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSGSEG 834 (913)
Q Consensus 758 ~~~~~~v~~s~~~~-~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d--~I~vwdl~~~~~~ 834 (913)
.+-+.+++|+|... .+++++....+-||.-....++..+.+|.+.|+.++|.++|+.|++|... .|.+||++...
T Consensus 207 ~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~-- 284 (406)
T KOG2919|consen 207 KGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSR-- 284 (406)
T ss_pred cceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhcc--
Confidence 23456788999876 56666778899999988899999999999999999999999999999865 99999998653
Q ss_pred ceEEEeecCCC---ceEEEEEeCCCCEEEEEEcCCeEEEEECCC-Cc-EEEEcccCCCeEEEEEeCCCCEEEEEeCC
Q 002519 835 ECVHELSCNGN---KFHSCVFHPTYPSLLVIGCYQSLELWNMSE-NK-TMTLTAHEGLIAALAVSTETGYVASASHD 906 (913)
Q Consensus 835 ~~i~~~~~~~~---~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~-~~-~~~~~~h~~~V~~l~~spdg~~Lasgs~D 906 (913)
..+..+..|.. .-.-+...|++++|++|+.||.|++||++. +. +..+..++..|+.++++|--.++|+++..
T Consensus 285 ~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 285 DPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred chhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccCc
Confidence 33333433332 333456678999999999999999999987 55 44777899999999999998888887643
No 153
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.83 E-value=5.2e-17 Score=183.38 Aligned_cols=293 Identities=30% Similarity=0.495 Sum_probs=231.8
Q ss_pred CCcccccccCccceeeeEeecCCCCEEEEEEecCCCEEEEEeC-CCcEEEEECCCCceeeEeccCCCCeEEEEECCCCC-
Q 002519 611 GGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGH-DKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP- 688 (913)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~Lasgs~-Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~- 688 (913)
....|+... .......+..|...|.+++|++++.++++++. |+.+++|++..++.+..+.+|...|.+++|+|++.
T Consensus 135 ~~~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 212 (466)
T COG2319 135 TVKLWDLST--PGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGL 212 (466)
T ss_pred cEEEEEecC--CCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcce
Confidence 444444433 25788889999999999999999999998885 99999999999899999999999999999999998
Q ss_pred EEEEEeCCCeEEEEEcCCCCceeE-EeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCee-eEEe---eCCceE
Q 002519 689 RLATSSFDKTVRVWDADNPGYSLR-TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC-TRVF---KGGTAQ 763 (913)
Q Consensus 689 ~Lasgs~Dg~V~Iwdl~~~~~~~~-~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~-~~~~---~~~~~~ 763 (913)
.+++++.|+.|++||... +..+. .+.+|...+ ...|++++ .++++++.|+.+++|+++.... ...+ ...+..
T Consensus 213 ~~~~~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~ 289 (466)
T COG2319 213 LIASGSSDGTIRLWDLST-GKLLRSTLSGHSDSV-VSSFSPDG-SLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLS 289 (466)
T ss_pred EEEEecCCCcEEEEECCC-CcEEeeecCCCCcce-eEeECCCC-CEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEE
Confidence 555558999999998885 55566 688888876 44899998 4555999999999999987664 4444 245667
Q ss_pred EEEecCCCEEEEEEcCCeEEEEECCCCeEEEEec--CCCCCeEEEEEcCCCCEEEEE-eCC-eEEEEECCCCCCCceEEE
Q 002519 764 MRFQPHLGRYLAAAAENVVSILDAETQACRLSLQ--GHTKPIDSVCWDPSGELLASV-SED-SVRVWTVGSGSEGECVHE 839 (913)
Q Consensus 764 v~~s~~~~~ll~~~~dg~I~i~D~~t~~~~~~l~--~h~~~V~sl~~spdg~~l~s~-s~d-~I~vwdl~~~~~~~~i~~ 839 (913)
+.|.|++..+++++.|+.+.+||..+........ .|...+..+.|.+++..++.+ ..| .+.+|++.... ....
T Consensus 290 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~---~~~~ 366 (466)
T COG2319 290 VAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK---PLKT 366 (466)
T ss_pred EEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc---eeEE
Confidence 7899988888888888889999999887776665 788889999994332555555 566 88889998764 2222
Q ss_pred eecCCCceEEEEEeCCCCEEEE-EEcCCeEEEEECCCCcEEEEcccC-CCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 002519 840 LSCNGNKFHSCVFHPTYPSLLV-IGCYQSLELWNMSENKTMTLTAHE-GLIAALAVSTETGYVASASHDKFVKLWK 913 (913)
Q Consensus 840 ~~~~~~~i~~l~~sp~g~~l~s-~s~dg~I~iwd~~~~~~~~~~~h~-~~V~~l~~spdg~~Lasgs~DG~I~IWd 913 (913)
... ...+..+.+.+ ...++. +..++.+.+|+............. ..+..+.+++++..+++++.++.+++|+
T Consensus 367 ~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (466)
T COG2319 367 LEG-HSNVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWD 440 (466)
T ss_pred ecC-CceEEEEEECC-CCCEEEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecCCCcEEEEe
Confidence 222 22278888888 543444 578899999999998888555555 8999999999999999999999999995
No 154
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.83 E-value=2.4e-20 Score=209.11 Aligned_cols=216 Identities=20% Similarity=0.373 Sum_probs=182.6
Q ss_pred CCCCcccccccCccceeeeEeecCCCCEEEEEEecC-CCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCC-
Q 002519 609 DAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSD-GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPS- 686 (913)
Q Consensus 609 d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspd-g~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspd- 686 (913)
.+.+.+|++.+...-+.+..|..|+..|++++|++. ..+|++|+.||+|++||+...+.+.++.+....|.+|.|+|.
T Consensus 109 nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~ 188 (839)
T KOG0269|consen 109 NGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGY 188 (839)
T ss_pred CCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCC
Confidence 445677888776667778899999999999999984 468999999999999999999999999999999999999985
Q ss_pred CCEEEEEeCCCeEEEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeE--Eee--CCce
Q 002519 687 MPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR--VFK--GGTA 762 (913)
Q Consensus 687 g~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~--~~~--~~~~ 762 (913)
+.+|+++.+.|.+.+||++-+..+...+..|.++|.|+.|+|+ +.+||+|+.|+.|+|||+.+.+... ++. ..+.
T Consensus 189 ~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPn-r~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~ 267 (839)
T KOG0269|consen 189 GNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPN-REWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVG 267 (839)
T ss_pred CceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCC-CceeeecCCCccEEEEeccCCCccceeEEeecceee
Confidence 6689999999999999999988899999999999999999995 5688899999999999998765433 222 3567
Q ss_pred EEEEecCCCEEEEEEc---CCeEEEEECCCC-eEEEEecCCCCCeEEEEEcC-CCCEEEEEeCC-eEEE
Q 002519 763 QMRFQPHLGRYLAAAA---ENVVSILDAETQ-ACRLSLQGHTKPIDSVCWDP-SGELLASVSED-SVRV 825 (913)
Q Consensus 763 ~v~~s~~~~~ll~~~~---dg~I~i~D~~t~-~~~~~l~~h~~~V~sl~~sp-dg~~l~s~s~d-~I~v 825 (913)
.++|-|...+.++.+. |-.|+|||++.. -+..++..|+..++.++|.. |...|.+++.| +|..
T Consensus 268 rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~q 336 (839)
T KOG0269|consen 268 RVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQ 336 (839)
T ss_pred eeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHHH
Confidence 8999999887776665 779999999887 56778889999999999976 33467777777 4433
No 155
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.83 E-value=5.2e-19 Score=193.18 Aligned_cols=136 Identities=22% Similarity=0.392 Sum_probs=109.3
Q ss_pred cCCeEEEEECCCCeEE--EEec--CCCCCeEEEEEcC-CCCEEEEEeCC-eEEEEECCCCCC----CceEEEeecCCCce
Q 002519 778 AENVVSILDAETQACR--LSLQ--GHTKPIDSVCWDP-SGELLASVSED-SVRVWTVGSGSE----GECVHELSCNGNKF 847 (913)
Q Consensus 778 ~dg~I~i~D~~t~~~~--~~l~--~h~~~V~sl~~sp-dg~~l~s~s~d-~I~vwdl~~~~~----~~~i~~~~~~~~~i 847 (913)
..|.|.||+++..-.+ ..+. .....|+.+.|+| |...|+++++| .|++|.+..+.. ......+..|..+|
T Consensus 601 ~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI 680 (1012)
T KOG1445|consen 601 SGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKI 680 (1012)
T ss_pred CCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceE
Confidence 3566777776653111 0111 1345689999999 56689999999 999999976532 34557788899999
Q ss_pred EEEEEeCC-CCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 002519 848 HSCVFHPT-YPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 913 (913)
Q Consensus 848 ~~l~~sp~-g~~l~s~s~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~Lasgs~DG~I~IWd 913 (913)
+++.|||- .+.|++++.|-+|+|||+.+.+.. .+.+|.+.|.+++|+|||+.+|+.+.||+|+||+
T Consensus 681 ~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~ 748 (1012)
T KOG1445|consen 681 TSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYE 748 (1012)
T ss_pred EEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeC
Confidence 99999994 467888999999999999998877 8999999999999999999999999999999985
No 156
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.83 E-value=2.8e-19 Score=195.07 Aligned_cols=242 Identities=19% Similarity=0.267 Sum_probs=198.3
Q ss_pred ceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEE
Q 002519 666 KSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRY 745 (913)
Q Consensus 666 ~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~i 745 (913)
.+-..+++|++.|.||...|.|.+|++|+.||+||||.+.+ +.+++++. ..+.|.||+|+|.+..-+++...+.++.|
T Consensus 391 ~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~T-gRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~~~i 468 (733)
T KOG0650|consen 391 RCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIAT-GRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGECVLI 468 (733)
T ss_pred eeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeec-ceEEEEEe-ecceeEEEEecCCCCceeEEEEecCceEE
Confidence 34456789999999999999999999999999999999998 78888776 56789999999987765555555555666
Q ss_pred EEcCCCe---------------------------------------ee-EEeeCCceEEEEecCCCEEEEEEcC---CeE
Q 002519 746 WSINNGS---------------------------------------CT-RVFKGGTAQMRFQPHLGRYLAAAAE---NVV 782 (913)
Q Consensus 746 wdl~~~~---------------------------------------~~-~~~~~~~~~v~~s~~~~~ll~~~~d---g~I 782 (913)
.+..-|. |+ -.....+..+.|+..|.+|++...+ ..|
T Consensus 469 vnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~V 548 (733)
T KOG0650|consen 469 VNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSV 548 (733)
T ss_pred eCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceE
Confidence 5543221 00 0112245568899999999988775 478
Q ss_pred EEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEEE
Q 002519 783 SILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVI 862 (913)
Q Consensus 783 ~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~ 862 (913)
.|+++...+...-|....+.|.++.|+|...+|++++...|+|||+... ..++.+......|..+++||.|..|+++
T Consensus 549 liHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kq---elvKkL~tg~kwiS~msihp~GDnli~g 625 (733)
T KOG0650|consen 549 LIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQ---ELVKKLLTGSKWISSMSIHPNGDNLILG 625 (733)
T ss_pred EEEecccccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHH---HHHHHHhcCCeeeeeeeecCCCCeEEEe
Confidence 9999988776666666677899999999999999999999999999764 5666666667889999999999999999
Q ss_pred EcCCeEEEEECCCCcE--EEEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEe
Q 002519 863 GCYQSLELWNMSENKT--MTLTAHEGLIAALAVSTETGYVASASHDKFVKLW 912 (913)
Q Consensus 863 s~dg~I~iwd~~~~~~--~~~~~h~~~V~~l~~spdg~~Lasgs~DG~I~IW 912 (913)
+.|+.+..||+.-... .++.-|...|++|+|++.-.++++|++||.+.||
T Consensus 626 s~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vf 677 (733)
T KOG0650|consen 626 SYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVF 677 (733)
T ss_pred cCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEE
Confidence 9999999999876643 3788999999999999999999999999999987
No 157
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=7.7e-19 Score=186.96 Aligned_cols=247 Identities=16% Similarity=0.222 Sum_probs=201.1
Q ss_pred eeeEeecCCCCEEEEEEecCCC-EEEEEeCCCcEEEEECCCCceee--EeccCC-CCeEEEEECCCCCEEEEEeCCCeEE
Q 002519 625 EANSVRASTSKVICCHFSSDGK-LLATGGHDKKAVLWHTDTLKSKT--NLEEHS-SLITDVRFSPSMPRLATSSFDKTVR 700 (913)
Q Consensus 625 ~~~~l~~H~~~V~~l~fspdg~-~Lasgs~Dg~V~vwd~~~~~~~~--~l~~h~-~~V~~l~fspdg~~Lasgs~Dg~V~ 700 (913)
.+..+.-...+|.+++|.|+|. .+++++.....++||+.+.+... ...++. ..+.....++++++|+..+..|.|.
T Consensus 249 ~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~ 328 (514)
T KOG2055|consen 249 KLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIH 328 (514)
T ss_pred hheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEE
Confidence 4555666678999999999999 99999999999999998766443 333443 4577888899999999999999999
Q ss_pred EEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeC----CceEEEEecCCCEEEEE
Q 002519 701 VWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG----GTAQMRFQPHLGRYLAA 776 (913)
Q Consensus 701 Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~----~~~~v~~s~~~~~ll~~ 776 (913)
|....+ +..+.+++ -.+.|.+++|+.+++.++ +++.+|.|.+||++...|++.+.. +.+.+|.+.++.++++|
T Consensus 329 lLhakT-~eli~s~K-ieG~v~~~~fsSdsk~l~-~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~G 405 (514)
T KOG2055|consen 329 LLHAKT-KELITSFK-IEGVVSDFTFSSDSKELL-ASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATG 405 (514)
T ss_pred eehhhh-hhhhheee-eccEEeeEEEecCCcEEE-EEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEec
Confidence 999887 66666665 567899999999998776 556689999999999999998864 45678889999999999
Q ss_pred EcCCeEEEEECCC------CeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC---eEEEEECCCCCCCceEEEeecCCCce
Q 002519 777 AAENVVSILDAET------QACRLSLQGHTKPIDSVCWDPSGELLASVSED---SVRVWTVGSGSEGECVHELSCNGNKF 847 (913)
Q Consensus 777 ~~dg~I~i~D~~t------~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d---~I~vwdl~~~~~~~~i~~~~~~~~~i 847 (913)
+..|.|.|||..+ .+++..+..-...|+++.|++|..+|+.++.. .+++..+.+.............-+.+
T Consensus 406 S~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~v 485 (514)
T KOG2055|consen 406 SDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHV 485 (514)
T ss_pred cCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccce
Confidence 9999999999654 46777777777889999999999999998865 78988886552222222222334568
Q ss_pred EEEEEeCCCCEEEEEEcCCeEEEEECC
Q 002519 848 HSCVFHPTYPSLLVIGCYQSLELWNMS 874 (913)
Q Consensus 848 ~~l~~sp~g~~l~s~s~dg~I~iwd~~ 874 (913)
+|++|+|.+.++++|...|.|.+|.+.
T Consensus 486 tc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 486 TCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred EEEEecCCCceEEeecCCCceeeEeec
Confidence 999999999999999999999999874
No 158
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.83 E-value=7.8e-20 Score=181.95 Aligned_cols=280 Identities=18% Similarity=0.209 Sum_probs=203.1
Q ss_pred eeeEeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEec-cCCCCeEEEEECCCCCEEEEEeCCCeEEEEE
Q 002519 625 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE-EHSSLITDVRFSPSMPRLATSSFDKTVRVWD 703 (913)
Q Consensus 625 ~~~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~-~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwd 703 (913)
+...+++|.+.|+|+.|-.+++ |.+|..-|.|++|++.+.+.+..++ .|...|+.+...|+ ..|.+-+.|+.+.+|+
T Consensus 6 P~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ 83 (323)
T KOG0322|consen 6 PFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWT 83 (323)
T ss_pred CeeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEE
Confidence 4567889999999999988874 8899999999999999999998888 67888999998887 5788999999999999
Q ss_pred cCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCC-cEEEEEcC-----------CCeeeEEee-------CCceEE
Q 002519 704 ADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDG-EIRYWSIN-----------NGSCTRVFK-------GGTAQM 764 (913)
Q Consensus 704 l~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg-~I~iwdl~-----------~~~~~~~~~-------~~~~~v 764 (913)
+.. ... ...|.-.++++.|++.. +...+... ....|+-+ ....+...+ +.+.+.
T Consensus 84 ia~-s~~---i~i~Si~~nslgFCrfS---l~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~ 156 (323)
T KOG0322|consen 84 IAY-SAF---ISIHSIVVNSLGFCRFS---LVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQ 156 (323)
T ss_pred ccC-cce---EEEeeeeccccccccce---eccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeee
Confidence 985 222 22344556666666431 11111111 11111111 111111111 112222
Q ss_pred EEecC-CC--EEEEEEcCCeEEEEECCCC----------eEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCC
Q 002519 765 RFQPH-LG--RYLAAAAENVVSILDAETQ----------ACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGS 830 (913)
Q Consensus 765 ~~s~~-~~--~ll~~~~dg~I~i~D~~t~----------~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~ 830 (913)
.+... +. .+++|..+|.|.+||+.++ +.+.....|..+|.++.|.+....=++++.+ .+..|.+..
T Consensus 157 ~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~ 236 (323)
T KOG0322|consen 157 DKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNH 236 (323)
T ss_pred eccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeecc
Confidence 22222 12 3455666899999999997 3344455688999999999866666677777 888998864
Q ss_pred C-CCCceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEeCCCc
Q 002519 831 G-SEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKF 908 (913)
Q Consensus 831 ~-~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~Lasgs~DG~ 908 (913)
. .......++......+..+.+-||++.+++++.|+.|+||..++...+ .+.-|.+.|++++|+|+..++|+++.|+.
T Consensus 237 s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~r 316 (323)
T KOG0322|consen 237 STGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDAR 316 (323)
T ss_pred ccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCce
Confidence 4 222233344444567888999999999999999999999999999988 77889999999999999999999999999
Q ss_pred EEEeC
Q 002519 909 VKLWK 913 (913)
Q Consensus 909 I~IWd 913 (913)
|.+||
T Consensus 317 ISLWk 321 (323)
T KOG0322|consen 317 ISLWK 321 (323)
T ss_pred EEeee
Confidence 99997
No 159
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.82 E-value=1.1e-18 Score=183.42 Aligned_cols=295 Identities=20% Similarity=0.285 Sum_probs=206.8
Q ss_pred ccccCCccCceeeecccCCCCCCCCCCcccccccCccceeeeEeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECC--
Q 002519 586 LVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTD-- 663 (913)
Q Consensus 586 ~~~~g~~d~~v~~~~~~d~~~~~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~-- 663 (913)
.+++++.|.+|..|.-..+..... ...++....+..|...|++|.|+|+|.+||+|+.+|.|.+|...
T Consensus 28 ~laT~G~D~~iriW~v~r~~~~~~----------~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~ 97 (434)
T KOG1009|consen 28 KLATAGGDKDIRIWKVNRSEPGGG----------DMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDV 97 (434)
T ss_pred ceecccCccceeeeeeeecCCCCC----------ceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCc
Confidence 445666666666664332211110 03567788899999999999999999999999999999999755
Q ss_pred ------C--------CceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCceeEEeccCCCCeEEEEEcCC
Q 002519 664 ------T--------LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPN 729 (913)
Q Consensus 664 ------~--------~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~ 729 (913)
+ ....+.+.+|...|..++|++++.++++++.|..+++||+.. +.....+.+|...|..++|.|.
T Consensus 98 ~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~-G~l~~~~~dh~~yvqgvawDpl 176 (434)
T KOG1009|consen 98 RIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHA-GQLLAILDDHEHYVQGVAWDPL 176 (434)
T ss_pred CCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEecc-ceeEeeccccccccceeecchh
Confidence 2 445677889999999999999999999999999999999998 7888999999999999999998
Q ss_pred CCeEEEEEeCCCcEEEEEcCCCeeeEEeeCCceE-EEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEE
Q 002519 730 KDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQ-MRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCW 808 (913)
Q Consensus 730 ~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~-v~~s~~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~ 808 (913)
+.+ +++-+.|...+.+.+.....+......+.. ..+.. ......++|.-++.+ .-.+.++|
T Consensus 177 ~qy-v~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~--------~e~~s~rLfhDeTlk---------sFFrRlsf 238 (434)
T KOG1009|consen 177 NQY-VASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNE--------REGKSTRLFHDETLK---------SFFRRLSF 238 (434)
T ss_pred hhh-hhhhccCcccceeeeeeeeeeeeeeeeEeeecccCC--------CCcceeeeeecCchh---------hhhhhccc
Confidence 764 558888887888777655544333210000 00000 011233344333322 23456788
Q ss_pred cCCCCEEEEEeCC----------eEEEEECCCCCCCceEEEeecCCCceEEEEEeC-----------------CCCEEEE
Q 002519 809 DPSGELLASVSED----------SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHP-----------------TYPSLLV 861 (913)
Q Consensus 809 spdg~~l~s~s~d----------~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp-----------------~g~~l~s 861 (913)
+|+|.+|++...- ..++|+-. .....+..+.+.......+.|+| -++.+++
T Consensus 239 TPdG~llvtPag~~~~g~~~~~n~tYvfsrk--~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfa 316 (434)
T KOG1009|consen 239 TPDGSLLVTPAGLFKVGGGVFRNTSYVFSRK--DLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFA 316 (434)
T ss_pred CCCCcEEEcccceeeeCCceeeceeEeeccc--cccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEE
Confidence 9999888765421 23445433 22234444444444444444443 2345667
Q ss_pred EEcCCeEEEEECCCCcEE--EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEE
Q 002519 862 IGCYQSLELWNMSENKTM--TLTAHEGLIAALAVSTETGYVASASHDKFVKL 911 (913)
Q Consensus 862 ~s~dg~I~iwd~~~~~~~--~~~~h~~~V~~l~~spdg~~Lasgs~DG~I~I 911 (913)
....+.|+|||..+...+ .-.-|-..|++++|++||.+|+..+.||...+
T Consensus 317 iAt~~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~ 368 (434)
T KOG1009|consen 317 IATKNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSL 368 (434)
T ss_pred EeecceEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEE
Confidence 777789999999998776 34468999999999999999999999997653
No 160
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.82 E-value=7e-17 Score=182.30 Aligned_cols=282 Identities=30% Similarity=0.535 Sum_probs=228.0
Q ss_pred EeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCc-eeeEeccCCC-CeEEEEE-CCCCC-EEEEEeC-CCeEEEE
Q 002519 628 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK-SKTNLEEHSS-LITDVRF-SPSMP-RLATSSF-DKTVRVW 702 (913)
Q Consensus 628 ~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~-~~~~l~~h~~-~V~~l~f-spdg~-~Lasgs~-Dg~V~Iw 702 (913)
.+..|...|.++.|.+.+..++.++.|+.|.+|+..... .+..+..+.. .+..+.+ ++++. +++..+. |+.+++|
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 139 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLW 139 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEE
Confidence 567899999999999999999999999999999999876 6777776443 7888887 88887 5555455 9999999
Q ss_pred EcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeC-CCcEEEEEcCCCeeeEEeeC---CceEEEEecCCCEEEEE-E
Q 002519 703 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDG-DGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAA-A 777 (913)
Q Consensus 703 dl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~-Dg~I~iwdl~~~~~~~~~~~---~~~~v~~s~~~~~ll~~-~ 777 (913)
++.........+..|...|.+++|+|++.. +++++. |+.+++|++..+..+..+.+ .+..+.|.+++..++++ +
T Consensus 140 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 218 (466)
T COG2319 140 DLSTPGKLIRTLEGHSESVTSLAFSPDGKL-LASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGS 218 (466)
T ss_pred EecCCCeEEEEEecCcccEEEEEECCCCCE-EEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEec
Confidence 998645677888899999999999999884 446664 99999999998777777765 56778899888745555 7
Q ss_pred cCCeEEEEECCCCeEEE-EecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEeecCCCceEEEEEeCC
Q 002519 778 AENVVSILDAETQACRL-SLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPT 855 (913)
Q Consensus 778 ~dg~I~i~D~~t~~~~~-~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~ 855 (913)
.|+.|++||...+..+. .+.+|...+ ...|++++.++++++.+ .+++|+++.... .+..+..|...+.++.|.|+
T Consensus 219 ~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~ 295 (466)
T COG2319 219 SDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSS--LLRTLSGHSSSVLSVAFSPD 295 (466)
T ss_pred CCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCc--EEEEEecCCccEEEEEECCC
Confidence 89999999999888877 688888875 44899999888888888 999999987644 23333566889999999998
Q ss_pred CCEEEEEEcCCeEEEEECCCCcEE-EE--cccCCCeEEEEEeCCCCEEEEE-eCCCcEEEeC
Q 002519 856 YPSLLVIGCYQSLELWNMSENKTM-TL--TAHEGLIAALAVSTETGYVASA-SHDKFVKLWK 913 (913)
Q Consensus 856 g~~l~s~s~dg~I~iwd~~~~~~~-~~--~~h~~~V~~l~~spdg~~Lasg-s~DG~I~IWd 913 (913)
+..+++++.|+.+.+||+...... .. ..|...|..+.|.+++..++.+ ..|+.+++|+
T Consensus 296 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 357 (466)
T COG2319 296 GKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWD 357 (466)
T ss_pred CCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeee
Confidence 888888999989999999888766 33 3688889999994332455555 6788898885
No 161
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=1.6e-18 Score=176.40 Aligned_cols=273 Identities=15% Similarity=0.220 Sum_probs=200.7
Q ss_pred cceEEEEcCCCcccc---CCCCeEEeCCCcchhhhcccccccCCccCceeeecccCCCCCCCCCCcccccccCccceeee
Q 002519 551 KPLMMFGTDGAGTLT---SPSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEAN 627 (913)
Q Consensus 551 ~~~~~~s~dg~~~~~---~~~~~vWd~~~g~~~~~~~~~~~~g~~d~~v~~~~~~d~~~~~d~~~~~~~~~~~~~~~~~~ 627 (913)
...+.|++.|.+++. ++.+-|||..|- ...+
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~----------------------------------------------~iar 59 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTF----------------------------------------------RIAR 59 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEcccc----------------------------------------------chhh
Confidence 357889999988766 445567776542 2334
Q ss_pred EeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEE-EEEeCCCeEEEEEcCC
Q 002519 628 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRL-ATSSFDKTVRVWDADN 706 (913)
Q Consensus 628 ~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~L-asgs~Dg~V~Iwdl~~ 706 (913)
.+.+|..+|+|++||+||+.|+|++.|..|.+||+..|.+++.++ ...+|+.+.|+|..... +++-.+..-.+.++..
T Consensus 60 ~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~ 138 (405)
T KOG1273|consen 60 MLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSD 138 (405)
T ss_pred hhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecC
Confidence 577899999999999999999999999999999999999888886 56789999999965433 3333344455566654
Q ss_pred CCceeEEecc---CCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeC----CceEEEEecCCCEEEEEEcC
Q 002519 707 PGYSLRTFMG---HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG----GTAQMRFQPHLGRYLAAAAE 779 (913)
Q Consensus 707 ~~~~~~~~~~---h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~----~~~~v~~s~~~~~ll~~~~d 779 (913)
+...+..... .+..-.+..|.+.|+++ ++|...|.+.++|..+.+|+..++. .+..+.++-.+..++.-+.|
T Consensus 139 ~~h~~Lp~d~d~dln~sas~~~fdr~g~yI-itGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsD 217 (405)
T KOG1273|consen 139 PKHSVLPKDDDGDLNSSASHGVFDRRGKYI-ITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSD 217 (405)
T ss_pred CceeeccCCCccccccccccccccCCCCEE-EEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCC
Confidence 2211111110 11112223577777755 4999999999999999999988864 34668899999999999999
Q ss_pred CeEEEEECCCC-------e--EEEEecC--CCCCeEEEEEcCCCCEEEEEeCC--eEEEEECCCCCCCceEEEeecCC-C
Q 002519 780 NVVSILDAETQ-------A--CRLSLQG--HTKPIDSVCWDPSGELLASVSED--SVRVWTVGSGSEGECVHELSCNG-N 845 (913)
Q Consensus 780 g~I~i~D~~t~-------~--~~~~l~~--h~~~V~sl~~spdg~~l~s~s~d--~I~vwdl~~~~~~~~i~~~~~~~-~ 845 (913)
..|+.|+++.- + +.+.+.. ....-.+++|+.+|.|++.++.. .++||.-..| ..++.+.+.. .
T Consensus 218 RvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~G---sLVKILhG~kgE 294 (405)
T KOG1273|consen 218 RVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIG---SLVKILHGTKGE 294 (405)
T ss_pred ceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCc---ceeeeecCCchh
Confidence 99999988632 1 1111111 12345688999999999999877 8999999877 6677777666 5
Q ss_pred ceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 002519 846 KFHSCVFHPTYPSLLVIGCYQSLELWNMSE 875 (913)
Q Consensus 846 ~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~ 875 (913)
....+.|+|-...|++. ..|.|+||....
T Consensus 295 ~l~DV~whp~rp~i~si-~sg~v~iw~~~~ 323 (405)
T KOG1273|consen 295 ELLDVNWHPVRPIIASI-ASGVVYIWAVVQ 323 (405)
T ss_pred heeecccccceeeeeec-cCCceEEEEeec
Confidence 67789999998877776 778999998643
No 162
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.81 E-value=1.5e-19 Score=197.03 Aligned_cols=252 Identities=21% Similarity=0.331 Sum_probs=195.9
Q ss_pred ceeeeEeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECC--------CCceeeEeccCCCCeEEEEECCCCCEEEEEe
Q 002519 623 FKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTD--------TLKSKTNLEEHSSLITDVRFSPSMPRLATSS 694 (913)
Q Consensus 623 ~~~~~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~--------~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs 694 (913)
+....+++.|.+.|++++|.+....|++++.||+|++|++. ..+.+.+|++|.++|.|+++.+++..+++|+
T Consensus 284 w~ik~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg 363 (577)
T KOG0642|consen 284 WNIKFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGG 363 (577)
T ss_pred cceeeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeec
Confidence 44455899999999999999999999999999999999993 3467889999999999999999999999999
Q ss_pred CCCeEEEEEcCCC---------CceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeC---Cc-
Q 002519 695 FDKTVRVWDADNP---------GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GT- 761 (913)
Q Consensus 695 ~Dg~V~Iwdl~~~---------~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~---~~- 761 (913)
.||+|+.|++... ......+.||.+.|+.++++....+|+ +|+.||+|++|+...... .+|.. +.
T Consensus 364 ~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Ll-scs~DgTvr~w~~~~~~~-~~f~~~~e~g~ 441 (577)
T KOG0642|consen 364 IDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLL-SCSSDGTVRLWEPTEESP-CTFGEPKEHGY 441 (577)
T ss_pred cCceeeeeccCCCCCcccccCcchhccceeccccceeeeeeccccccee-eecCCceEEeeccCCcCc-cccCCccccCC
Confidence 9999999966421 234567789999999999999877655 999999999999887665 33322 11
Q ss_pred -eEEEEecCC-CEEEEEEcCCeEEEEECCCCeEEEEecCC-------CCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCC
Q 002519 762 -AQMRFQPHL-GRYLAAAAENVVSILDAETQACRLSLQGH-------TKPIDSVCWDPSGELLASVSED-SVRVWTVGSG 831 (913)
Q Consensus 762 -~~v~~s~~~-~~ll~~~~dg~I~i~D~~t~~~~~~l~~h-------~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~ 831 (913)
..+.+.... ...++...-+.-.++|.+....+..+... ...+.-+.++|...+.+++.+| .|+++|..++
T Consensus 442 Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~ 521 (577)
T KOG0642|consen 442 PLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTG 521 (577)
T ss_pred cceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccccccc
Confidence 223332222 12222222333334444444333333321 1347788999999999999999 9999999887
Q ss_pred CCCceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE
Q 002519 832 SEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM 879 (913)
Q Consensus 832 ~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~ 879 (913)
..++....|...++++++.|+|.+|++++.|+.|++|.+....++
T Consensus 522 ---~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~ 566 (577)
T KOG0642|consen 522 ---KILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCV 566 (577)
T ss_pred ---ccchheeeccceecceeecCCCceEEeecCCceeehhhccchhee
Confidence 788888889999999999999999999999999999999877665
No 163
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.80 E-value=3.8e-18 Score=181.24 Aligned_cols=233 Identities=15% Similarity=0.345 Sum_probs=179.9
Q ss_pred EEEEECC-------CCCEEEEEeCCCeEEEEEcCCCC--ceeE------------------EeccCCCCeEEEEEcCCCC
Q 002519 679 TDVRFSP-------SMPRLATSSFDKTVRVWDADNPG--YSLR------------------TFMGHSASVMSLDFHPNKD 731 (913)
Q Consensus 679 ~~l~fsp-------dg~~Lasgs~Dg~V~Iwdl~~~~--~~~~------------------~~~~h~~~V~sl~fsp~~~ 731 (913)
.|+.|.. .|+++|.|+.|..|.|||++--. .+.. ...+|++.|.++.|+..-+
T Consensus 177 LC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~ 256 (463)
T KOG0270|consen 177 LCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFR 256 (463)
T ss_pred hhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccc
Confidence 5666643 36799999999999999986311 1111 1226899999999999999
Q ss_pred eEEEEEeCCCcEEEEEcCCCeeeEEee---CCceEEEEecCCC-EEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEE
Q 002519 732 DLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQMRFQPHLG-RYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVC 807 (913)
Q Consensus 732 ~ll~sgs~Dg~I~iwdl~~~~~~~~~~---~~~~~v~~s~~~~-~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~ 807 (913)
++|++|+.|.+|++||+.++++..++. ..+.++.|++... .+++|+.|++|.++|.|........-...+.|..++
T Consensus 257 nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~ 336 (463)
T KOG0270|consen 257 NVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVA 336 (463)
T ss_pred eeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEE
Confidence 999999999999999999999988876 4577899999875 566777899999999995322222222457799999
Q ss_pred EcCCCC-EEEEEeCC-eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCC-EEEEEEcCCeEEEEECCCCcEEEEccc
Q 002519 808 WDPSGE-LLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYP-SLLVIGCYQSLELWNMSENKTMTLTAH 884 (913)
Q Consensus 808 ~spdg~-~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~-~l~s~s~dg~I~iwd~~~~~~~~~~~h 884 (913)
|.+... .++++.+| +|+-+|+|... +++..+..|...|.+++++..-. ++++++.|+.|++|++..........|
T Consensus 337 w~~~se~~f~~~tddG~v~~~D~R~~~--~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~ 414 (463)
T KOG0270|consen 337 WDPHSENSFFVSTDDGTVYYFDIRNPG--KPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEH 414 (463)
T ss_pred ecCCCceeEEEecCCceEEeeecCCCC--CceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccc
Confidence 999766 55566666 99999999764 89999999999999999988654 577888999999999876655433333
Q ss_pred C---CCeEEEEEeCCCC-EEEEEeCCCcEEEeC
Q 002519 885 E---GLIAALAVSTETG-YVASASHDKFVKLWK 913 (913)
Q Consensus 885 ~---~~V~~l~~spdg~-~Lasgs~DG~I~IWd 913 (913)
. +...|+++.|+-. +++.|+..+.++|||
T Consensus 415 ~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd 447 (463)
T KOG0270|consen 415 SFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWD 447 (463)
T ss_pred cccccceeecccCCCcceEEEecCccceEEEee
Confidence 3 3466777777655 577788888899997
No 164
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.80 E-value=6.5e-18 Score=187.66 Aligned_cols=288 Identities=19% Similarity=0.296 Sum_probs=204.4
Q ss_pred ceeeeEeecCCCCEEEEEEecCCC---EEEEEeCCCcEEEEECCC--CceeeEeccCCCCeEEEEECCCCCEEEEEeCCC
Q 002519 623 FKEANSVRASTSKVICCHFSSDGK---LLATGGHDKKAVLWHTDT--LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDK 697 (913)
Q Consensus 623 ~~~~~~l~~H~~~V~~l~fspdg~---~Lasgs~Dg~V~vwd~~~--~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg 697 (913)
.-....+.+|..+|+|+.|-|+.. ++++|+.|+.|++|.++. ...+..+.+|...+.|+ +.....+.+.+.|+
T Consensus 44 ~~i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~~~~~~cv--~a~~~~~~~~~ad~ 121 (764)
T KOG1063|consen 44 ILIVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQGHCKECVCV--VARSSVMTCKAADG 121 (764)
T ss_pred ceeEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeecCcceeEEEE--EeeeeEEEeeccCc
Confidence 346678899999999999999887 899999999999999983 34556677766555554 33322333336899
Q ss_pred eEEEEEcCCCC-ceeEEec--cCCCCeEEEEEcC-CCCeEEEEEeCCCcEEEEEcCCCee--eEEeeCCc---eEEEEec
Q 002519 698 TVRVWDADNPG-YSLRTFM--GHSASVMSLDFHP-NKDDLICSCDGDGEIRYWSINNGSC--TRVFKGGT---AQMRFQP 768 (913)
Q Consensus 698 ~V~Iwdl~~~~-~~~~~~~--~h~~~V~sl~fsp-~~~~ll~sgs~Dg~I~iwdl~~~~~--~~~~~~~~---~~v~~s~ 768 (913)
+|++||..... .+...+. .....-.|+++.+ .+..+++.|+.+..|.++.-...++ +..++++. ..++|..
T Consensus 122 ~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~ 201 (764)
T KOG1063|consen 122 TVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFAR 201 (764)
T ss_pred eEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhc
Confidence 99999995422 1222222 1122234556666 4455666777788888887665543 34455553 4566665
Q ss_pred CCC---EEEEEEcCCeEEEEECCCCe---------------------EEEE----------ecCCCCCeEEEEEcCCCCE
Q 002519 769 HLG---RYLAAAAENVVSILDAETQA---------------------CRLS----------LQGHTKPIDSVCWDPSGEL 814 (913)
Q Consensus 769 ~~~---~ll~~~~dg~I~i~D~~t~~---------------------~~~~----------l~~h~~~V~sl~~spdg~~ 814 (913)
.++ .+++++.|..|+||.+.-+. ...+ +.+|+++|+++.|+|.+..
T Consensus 202 ~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~ 281 (764)
T KOG1063|consen 202 LGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLD 281 (764)
T ss_pred cCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhh
Confidence 544 34445559999999653221 1111 2389999999999999999
Q ss_pred EEEEeCC-eEEEEECCCCCC----CceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcE----EEEcccC
Q 002519 815 LASVSED-SVRVWTVGSGSE----GECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKT----MTLTAHE 885 (913)
Q Consensus 815 l~s~s~d-~I~vwdl~~~~~----~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~----~~~~~h~ 885 (913)
|++++.| ++.+|.-.+..- ..++.+..+....+..+.|+|++..|++-+..|..++|....... ..+.+|.
T Consensus 282 LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~ 361 (764)
T KOG1063|consen 282 LLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHV 361 (764)
T ss_pred heecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeecccccccc
Confidence 9999999 999998754311 122333334455689999999999999999999999999443221 2667999
Q ss_pred CCeEEEEEeCCCCEEEEEeCCCcEEEe
Q 002519 886 GLIAALAVSTETGYVASASHDKFVKLW 912 (913)
Q Consensus 886 ~~V~~l~~spdg~~Lasgs~DG~I~IW 912 (913)
+.|.+++|+|.|++|+++|.|-+-|||
T Consensus 362 ~~V~dv~W~psGeflLsvs~DQTTRlF 388 (764)
T KOG1063|consen 362 DGVKDVDWDPSGEFLLSVSLDQTTRLF 388 (764)
T ss_pred ccceeeeecCCCCEEEEeccccceeee
Confidence 999999999999999999999998886
No 165
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.80 E-value=7.2e-20 Score=205.78 Aligned_cols=275 Identities=21% Similarity=0.373 Sum_probs=215.6
Q ss_pred cceeeeEeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEE
Q 002519 622 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRV 701 (913)
Q Consensus 622 ~~~~~~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~I 701 (913)
..+.++.+.+|.+.|+|+.|...|.++++|+.|..|+||..+++.+...+.||++.|++++.+.+..+++++|.|..|++
T Consensus 179 kmk~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrv 258 (1113)
T KOG0644|consen 179 KMKNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRV 258 (1113)
T ss_pred HHHHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEE
Confidence 45677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEE-----ee--CCceEEEEecCCCEEE
Q 002519 702 WDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV-----FK--GGTAQMRFQPHLGRYL 774 (913)
Q Consensus 702 wdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~-----~~--~~~~~v~~s~~~~~ll 774 (913)
|.+.. +.++..+.+|.+.|++|+|+|-- +.+.||++++||.+-.-.+.. +. .-+..+.|...+..++
T Consensus 259 Wrl~~-~~pvsvLrghtgavtaiafsP~~-----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~ 332 (1113)
T KOG0644|consen 259 WRLPD-GAPVSVLRGHTGAVTAIAFSPRA-----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFL 332 (1113)
T ss_pred EecCC-CchHHHHhccccceeeeccCccc-----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccc
Confidence 99998 88899999999999999999863 778899999999882111111 11 1223445566667788
Q ss_pred EEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCC-CEEEEEeCC-eEEEEECCCCCCCceEEEeecCCCceEEEEE
Q 002519 775 AAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSG-ELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVF 852 (913)
Q Consensus 775 ~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg-~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~ 852 (913)
+++.|+.-..|...... .+...+.-+.++.+- .+.++.-.+ .+++|++.++ ...+.+.+|...+..+.+
T Consensus 333 Tgs~d~ea~n~e~~~l~------~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g---~l~H~l~ghsd~~yvLd~ 403 (1113)
T KOG0644|consen 333 TGSRDGEARNHEFEQLA------WRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTG---QLLHNLMGHSDEVYVLDV 403 (1113)
T ss_pred cccCCcccccchhhHhh------hhccceEEEeccccccccceeeeeeeEeeeeecccc---hhhhhhcccccceeeeee
Confidence 88888877777654321 122222222233222 355556666 8999999877 667777888999999999
Q ss_pred eCCCCEE-EEEEcCCeEEEEECCCCcEE--EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEe
Q 002519 853 HPTYPSL-LVIGCYQSLELWNMSENKTM--TLTAHEGLIAALAVSTETGYVASASHDKFVKLW 912 (913)
Q Consensus 853 sp~g~~l-~s~s~dg~I~iwd~~~~~~~--~~~~h~~~V~~l~~spdg~~Lasgs~DG~I~IW 912 (913)
||-...+ ..++.||.+.|||+-.+..+ ...+ .+.+...+|++||..++...+-|.++|.
T Consensus 404 Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~g-h~kl~d~kFSqdgts~~lsd~hgql~i~ 465 (1113)
T KOG0644|consen 404 HPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIG-HGKLVDGKFSQDGTSIALSDDHGQLYIL 465 (1113)
T ss_pred cCCCcHhhhhccCCCceEeeecccCCcceeeecc-cceeeccccCCCCceEecCCCCCceEEe
Confidence 9977654 56788999999999988776 3334 5567778999999988877777777764
No 166
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.80 E-value=1.9e-18 Score=179.75 Aligned_cols=205 Identities=26% Similarity=0.422 Sum_probs=164.9
Q ss_pred ccCCCCeEEEEECCCCC--EEEEEeCCCeEEEEEcCC---------------CCceeEEeccCCCCeEEEEEcCCCCeEE
Q 002519 672 EEHSSLITDVRFSPSMP--RLATSSFDKTVRVWDADN---------------PGYSLRTFMGHSASVMSLDFHPNKDDLI 734 (913)
Q Consensus 672 ~~h~~~V~~l~fspdg~--~Lasgs~Dg~V~Iwdl~~---------------~~~~~~~~~~h~~~V~sl~fsp~~~~ll 734 (913)
..|.+.|..++-++-++ +.++-+..|.|.||++.. ..+++.++.+|...-+.|+|+|-....+
T Consensus 148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~L 227 (440)
T KOG0302|consen 148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRL 227 (440)
T ss_pred cccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccccc
Confidence 35777788887776544 556667799999999862 2346778889999999999999655445
Q ss_pred EEEeCCCcEEEEEcCCCeeeEEeeCCceEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCC-
Q 002519 735 CSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGE- 813 (913)
Q Consensus 735 ~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~s~~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~- 813 (913)
++|.--+.|++|...++..... ...|.+|+..|..++|+|..+
T Consensus 228 lsGDc~~~I~lw~~~~g~W~vd------------------------------------~~Pf~gH~~SVEDLqWSptE~~ 271 (440)
T KOG0302|consen 228 LSGDCVKGIHLWEPSTGSWKVD------------------------------------QRPFTGHTKSVEDLQWSPTEDG 271 (440)
T ss_pred ccCccccceEeeeeccCceeec------------------------------------CccccccccchhhhccCCccCc
Confidence 5887778888888766432110 113456999999999999766
Q ss_pred EEEEEeCC-eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE----EEcccCCCe
Q 002519 814 LLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM----TLTAHEGLI 888 (913)
Q Consensus 814 ~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~----~~~~h~~~V 888 (913)
+|++|+.| +|+|||+|.+....++.. +.|...|+.+.|+....+|++|+.||+++|||++..+.- .+..|..+|
T Consensus 272 vfaScS~DgsIrIWDiRs~~~~~~~~~-kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pI 350 (440)
T KOG0302|consen 272 VFASCSCDGSIRIWDIRSGPKKAAVST-KAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPI 350 (440)
T ss_pred eEEeeecCceEEEEEecCCCccceeEe-eccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCe
Confidence 89999999 999999999877677766 888999999999999999999999999999999865433 888999999
Q ss_pred EEEEEeCCC-CEEEEEeCCCcEEEeC
Q 002519 889 AALAVSTET-GYVASASHDKFVKLWK 913 (913)
Q Consensus 889 ~~l~~spdg-~~Lasgs~DG~I~IWd 913 (913)
++|.|+|.. ..|++++.|..|.|||
T Consensus 351 tsieW~p~e~s~iaasg~D~QitiWD 376 (440)
T KOG0302|consen 351 TSIEWHPHEDSVIAASGEDNQITIWD 376 (440)
T ss_pred eEEEeccccCceEEeccCCCcEEEEE
Confidence 999999854 5788888999999997
No 167
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=3.9e-19 Score=190.21 Aligned_cols=291 Identities=19% Similarity=0.302 Sum_probs=226.8
Q ss_pred cceeeeEeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEec-cCCCCeEEEEECCC--CCEEEEEeCCCe
Q 002519 622 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE-EHSSLITDVRFSPS--MPRLATSSFDKT 698 (913)
Q Consensus 622 ~~~~~~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~-~h~~~V~~l~fspd--g~~Lasgs~Dg~ 698 (913)
.+.....|..|.+.|..|.|+..|..|++|+.|..|.+||+..+..+..+. +|...|.--.|-|. ...|++++.||.
T Consensus 131 r~~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgq 210 (559)
T KOG1334|consen 131 RLRLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQ 210 (559)
T ss_pred HhhhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCc
Confidence 355667889999999999999999999999999999999999888777765 79999998899874 568999999999
Q ss_pred EEEEEcCCCCce--eEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEee---------CCceEEEEe
Q 002519 699 VRVWDADNPGYS--LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---------GGTAQMRFQ 767 (913)
Q Consensus 699 V~Iwdl~~~~~~--~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~---------~~~~~v~~s 767 (913)
|++=.+...+.+ ...+..|.+.|..++.-|+..+-|.+|+.|+.|.-+|++.......+. .....++..
T Consensus 211 vr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~ 290 (559)
T KOG1334|consen 211 VRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVD 290 (559)
T ss_pred eeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecC
Confidence 999888764543 355667999999999999999999999999999999998875433321 134567788
Q ss_pred cCCC-EEEEEEcCCeEEEEECCCCeE------EEEec------CCCCCeEEEEEcCCCC-EEEEEeCCeEEEEECCCCCC
Q 002519 768 PHLG-RYLAAAAENVVSILDAETQAC------RLSLQ------GHTKPIDSVCWDPSGE-LLASVSEDSVRVWTVGSGSE 833 (913)
Q Consensus 768 ~~~~-~ll~~~~dg~I~i~D~~t~~~------~~~l~------~h~~~V~sl~~spdg~-~l~s~s~d~I~vwdl~~~~~ 833 (913)
|... .+++++.|..+++||.+.-.. +..+. .....|++++|+.++. +|++..+..|++|.-..+.-
T Consensus 291 P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G 370 (559)
T KOG1334|consen 291 PRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDG 370 (559)
T ss_pred CCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccC
Confidence 8775 677788899999999876321 12222 1234599999997665 55555555899995433211
Q ss_pred --C-------ceEE-EeecCCCc--eEEEE-EeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCE
Q 002519 834 --G-------ECVH-ELSCNGNK--FHSCV-FHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGY 899 (913)
Q Consensus 834 --~-------~~i~-~~~~~~~~--i~~l~-~sp~g~~l~s~s~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~ 899 (913)
. ..++ .+++|.+. |..+- |-|...|+++|+.-|.|.||+-++++++ .+.+....|+||.-+|--.+
T Consensus 371 ~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~Pv 450 (559)
T KOG1334|consen 371 SEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPV 450 (559)
T ss_pred CCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCch
Confidence 0 1222 26666543 44554 6788899999999999999999999988 45555559999999999999
Q ss_pred EEEEeCCCcEEEe
Q 002519 900 VASASHDKFVKLW 912 (913)
Q Consensus 900 Lasgs~DG~I~IW 912 (913)
||++|-|..|+||
T Consensus 451 LAsSGid~DVKIW 463 (559)
T KOG1334|consen 451 LASSGIDHDVKIW 463 (559)
T ss_pred hhccCCccceeee
Confidence 9999999999999
No 168
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=4.5e-18 Score=175.34 Aligned_cols=267 Identities=17% Similarity=0.297 Sum_probs=188.5
Q ss_pred CEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECC--CCCEEEEEeCCCeEEEEEcCCCCce-eEEeccCC-CCe
Q 002519 646 KLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSP--SMPRLATSSFDKTVRVWDADNPGYS-LRTFMGHS-ASV 721 (913)
Q Consensus 646 ~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fsp--dg~~Lasgs~Dg~V~Iwdl~~~~~~-~~~~~~h~-~~V 721 (913)
..+|++...|.|+|||..++..+..|+++...+..++|.. ....+.+|+.||+|++||++...+. ...+..+. .+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 5789999999999999999999999999999999999977 3568999999999999999975443 34445555 455
Q ss_pred EEEEEcCCCCeEEEEEe----CCCcEEEEEcCCCee-eEE----eeCCceEEEEecCCC-EEEEEEcCCeEEEEECCCCe
Q 002519 722 MSLDFHPNKDDLICSCD----GDGEIRYWSINNGSC-TRV----FKGGTAQMRFQPHLG-RYLAAAAENVVSILDAETQA 791 (913)
Q Consensus 722 ~sl~fsp~~~~ll~sgs----~Dg~I~iwdl~~~~~-~~~----~~~~~~~v~~s~~~~-~ll~~~~dg~I~i~D~~t~~ 791 (913)
.|++.... ++++++|. .|-.|.+||++.... ++. +...++.++|+|.+. .+++|+.||.|.|||++...
T Consensus 121 ~~ld~nck-~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~ 199 (376)
T KOG1188|consen 121 ICLDLNCK-KNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDN 199 (376)
T ss_pred eEeeccCc-CCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCc
Confidence 55655433 45776664 367899999998765 443 345789999999884 56677779999999998652
Q ss_pred ---EEEEecCCCCCeEEEEEcCCC-CEEEEEeCC-eEEEEECCCCCCCceEEEe--e-------cCCCceEEEEEeCCCC
Q 002519 792 ---CRLSLQGHTKPIDSVCWDPSG-ELLASVSED-SVRVWTVGSGSEGECVHEL--S-------CNGNKFHSCVFHPTYP 857 (913)
Q Consensus 792 ---~~~~l~~h~~~V~sl~~spdg-~~l~s~s~d-~I~vwdl~~~~~~~~i~~~--~-------~~~~~i~~l~~sp~g~ 857 (913)
.+...-.|...|.++.|..++ +.|.+-+.. ++.+|+++.+.....+..- . .....+..+....+..
T Consensus 200 EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~ 279 (376)
T KOG1188|consen 200 EEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKD 279 (376)
T ss_pred chhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcc
Confidence 222333477789999999887 245555555 9999999877422111100 0 0011122222233445
Q ss_pred EEEEEEc-CCeEEEEECC---CCcEE----EEc-ccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 002519 858 SLLVIGC-YQSLELWNMS---ENKTM----TLT-AHEGLIAALAVSTETGYVASASHDKFVKLWK 913 (913)
Q Consensus 858 ~l~s~s~-dg~I~iwd~~---~~~~~----~~~-~h~~~V~~l~~spdg~~Lasgs~DG~I~IWd 913 (913)
.+++++. .+...++-+. ++... .+. +|...|+++.|...+.++.|||+||.|.+|+
T Consensus 280 ~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk 344 (376)
T KOG1188|consen 280 TCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWK 344 (376)
T ss_pred eEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEe
Confidence 5555555 5555555433 33222 333 4788899999999999999999999999996
No 169
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.78 E-value=1.1e-17 Score=168.37 Aligned_cols=282 Identities=20% Similarity=0.257 Sum_probs=195.2
Q ss_pred cccccccCccceeeeEeecCCCCEEEEEEec-CCCEEEEEeCC-------CcEEEEECCC---------CceeeEec-cC
Q 002519 613 RGMDVSQGFSFKEANSVRASTSKVICCHFSS-DGKLLATGGHD-------KKAVLWHTDT---------LKSKTNLE-EH 674 (913)
Q Consensus 613 ~~~~~~~~~~~~~~~~l~~H~~~V~~l~fsp-dg~~Lasgs~D-------g~V~vwd~~~---------~~~~~~l~-~h 674 (913)
...+...+-+.-..+.|..|.+.|+.|+-+| |.++|+++..+ ..+.||.+.. .+++..+. .+
T Consensus 43 hll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldtea 122 (370)
T KOG1007|consen 43 HLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEA 122 (370)
T ss_pred EEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHH
Confidence 3344444334444566788999999999999 55666666542 3578998863 33444454 46
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCceeEEec-----cCCCCeEEEEEcCC-CCeEEEEEeCCCcEEEEEc
Q 002519 675 SSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFM-----GHSASVMSLDFHPN-KDDLICSCDGDGEIRYWSI 748 (913)
Q Consensus 675 ~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~-----~h~~~V~sl~fsp~-~~~ll~sgs~Dg~I~iwdl 748 (913)
-+.|.||.|.|++..|++-. |..|.+|++.+..+.+..+. ++....++-+|+|. ..+.+ ....|+++..||+
T Consensus 123 vg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv-~tt~d~tl~~~D~ 200 (370)
T KOG1007|consen 123 VGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQV-ATTSDSTLQFWDL 200 (370)
T ss_pred hCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceE-EEeCCCcEEEEEc
Confidence 67899999999999998877 88899999998554333332 35667888899993 33344 3445999999999
Q ss_pred CCCeeeEEeeC-C---ceEEEEecCCCEEEE-EEcCCeEEEEECCCC-eEEEEecCCCCCeEEEEEcCCCC-EEEEEeCC
Q 002519 749 NNGSCTRVFKG-G---TAQMRFQPHLGRYLA-AAAENVVSILDAETQ-ACRLSLQGHTKPIDSVCWDPSGE-LLASVSED 821 (913)
Q Consensus 749 ~~~~~~~~~~~-~---~~~v~~s~~~~~ll~-~~~dg~I~i~D~~t~-~~~~~l~~h~~~V~sl~~spdg~-~l~s~s~d 821 (913)
++.++...++. + +..+.|.|+..++++ ++.||.|+|||.+.. .++.++.+|..+|.++.|+|... +|++++.|
T Consensus 201 RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SD 280 (370)
T KOG1007|consen 201 RTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSD 280 (370)
T ss_pred cchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCC
Confidence 99887776654 2 566889998876555 556899999999875 68889999999999999999665 88899999
Q ss_pred -eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCC-E
Q 002519 822 -SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETG-Y 899 (913)
Q Consensus 822 -~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~-~ 899 (913)
.|.+|...+-..... +.|..+....-.......++ -+..+.+.++..|++.|++++|+.-.. +
T Consensus 281 s~V~Lsca~svSSE~q-------------i~~~~dese~e~~dseer~k--pL~dg~l~tydehEDSVY~~aWSsadPWi 345 (370)
T KOG1007|consen 281 SAVNLSCASSVSSEQQ-------------IEFEDDESESEDEDSEERVK--PLQDGQLETYDEHEDSVYALAWSSADPWI 345 (370)
T ss_pred ceeEEEeccccccccc-------------cccccccccCcchhhHHhcc--cccccccccccccccceEEEeeccCCCee
Confidence 899988754321111 11111100000000001122 344555567889999999999987555 6
Q ss_pred EEEEeCCCcEEE
Q 002519 900 VASASHDKFVKL 911 (913)
Q Consensus 900 Lasgs~DG~I~I 911 (913)
+|+-+.||+|.|
T Consensus 346 FASLSYDGRviI 357 (370)
T KOG1007|consen 346 FASLSYDGRVII 357 (370)
T ss_pred EEEeccCceEEe
Confidence 788899999876
No 170
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.77 E-value=2.5e-16 Score=175.74 Aligned_cols=263 Identities=12% Similarity=0.195 Sum_probs=181.9
Q ss_pred EEEEeCCCcEEEEECCC-Cc--eeeEeccCCCCeEEEEECCCCCEEEEEeC-CCeEEEEEcCCCCce--eEEeccCCCCe
Q 002519 648 LATGGHDKKAVLWHTDT-LK--SKTNLEEHSSLITDVRFSPSMPRLATSSF-DKTVRVWDADNPGYS--LRTFMGHSASV 721 (913)
Q Consensus 648 Lasgs~Dg~V~vwd~~~-~~--~~~~l~~h~~~V~~l~fspdg~~Lasgs~-Dg~V~Iwdl~~~~~~--~~~~~~h~~~V 721 (913)
+++...++.|++||+.+ ++ .+..+. +.+....++++|++++|++++. ++.|.+|+++..+.. +... ......
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~-~~~~~p 82 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAES-PLPGSP 82 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeee-cCCCCc
Confidence 34446789999999964 33 444554 3456788999999999877754 888999999743332 2222 233456
Q ss_pred EEEEEcCCCCeEEEEEeCCCcEEEEEcCCC----eeeEEeeC--CceEEEEecCCCEEEEEEc-CCeEEEEECCCCeEEE
Q 002519 722 MSLDFHPNKDDLICSCDGDGEIRYWSINNG----SCTRVFKG--GTAQMRFQPHLGRYLAAAA-ENVVSILDAETQACRL 794 (913)
Q Consensus 722 ~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~----~~~~~~~~--~~~~v~~s~~~~~ll~~~~-dg~I~i~D~~t~~~~~ 794 (913)
..|+|+|+++.++++...++.|.+|++++. +.+..+.+ +...+.++|++++++++.. ++.|.+||+.+...+.
T Consensus 83 ~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~ 162 (330)
T PRK11028 83 THISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLV 162 (330)
T ss_pred eEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCccc
Confidence 789999999988877777999999999742 22232322 3466789999998877665 6899999998743221
Q ss_pred -------EecCCCCCeEEEEEcCCCCEEEEEeC-C-eEEEEECCCC-CCCceEEEeecC------CCceEEEEEeCCCCE
Q 002519 795 -------SLQGHTKPIDSVCWDPSGELLASVSE-D-SVRVWTVGSG-SEGECVHELSCN------GNKFHSCVFHPTYPS 858 (913)
Q Consensus 795 -------~l~~h~~~V~sl~~spdg~~l~s~s~-d-~I~vwdl~~~-~~~~~i~~~~~~------~~~i~~l~~sp~g~~ 858 (913)
.+. .......++|+|+|++++++.. + +|.+||+... ...+.+..+... ......+.++|++++
T Consensus 163 ~~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~ 241 (330)
T PRK11028 163 AQEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRH 241 (330)
T ss_pred ccCCCceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCE
Confidence 111 1234678999999999988876 3 9999999742 222334433221 112346889999999
Q ss_pred EEEEEc-CCeEEEEECCCCc-EEEEccc---CCCeEEEEEeCCCCEEEEEeC-CCcEEEeC
Q 002519 859 LLVIGC-YQSLELWNMSENK-TMTLTAH---EGLIAALAVSTETGYVASASH-DKFVKLWK 913 (913)
Q Consensus 859 l~s~s~-dg~I~iwd~~~~~-~~~~~~h---~~~V~~l~~spdg~~Lasgs~-DG~I~IWd 913 (913)
++++.. ++.|.+|++.... ...+.++ ......+.|+|+|++|++++. +++|.||+
T Consensus 242 lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~ 302 (330)
T PRK11028 242 LYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYE 302 (330)
T ss_pred EEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEE
Confidence 999864 6799999986532 2222222 235668999999999998775 89999984
No 171
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.77 E-value=5.9e-16 Score=172.69 Aligned_cols=261 Identities=13% Similarity=0.154 Sum_probs=181.1
Q ss_pred CCCcccccccCccceeeeEeecCCCCEEEEEEecCCCEEEEEe-CCCcEEEEECC-CCce--eeEeccCCCCeEEEEECC
Q 002519 610 AGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGG-HDKKAVLWHTD-TLKS--KTNLEEHSSLITDVRFSP 685 (913)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~Lasgs-~Dg~V~vwd~~-~~~~--~~~l~~h~~~V~~l~fsp 685 (913)
..+..|++...-.++.+..+. +.+....++|+|++++|++++ .++.|.+|+++ +++. +.... .......|+|+|
T Consensus 12 ~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~ 89 (330)
T PRK11028 12 QQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDH 89 (330)
T ss_pred CCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEECC
Confidence 344455553222455666665 346688899999999987765 47889999997 3332 22222 334577899999
Q ss_pred CCCEEEEEeC-CCeEEEEEcCCCCce---eEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeE------
Q 002519 686 SMPRLATSSF-DKTVRVWDADNPGYS---LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR------ 755 (913)
Q Consensus 686 dg~~Lasgs~-Dg~V~Iwdl~~~~~~---~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~------ 755 (913)
++++|++++. ++.|.+|++++.+.. +..+. +...+.+++|+|+++.++++...++.|++||+++...+.
T Consensus 90 ~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~ 168 (330)
T PRK11028 90 QGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAE 168 (330)
T ss_pred CCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCc
Confidence 9999988875 889999999753322 22222 334567789999999888888888999999998633221
Q ss_pred -Ee--eCCceEEEEecCCCEEEEEEc-CCeEEEEECCC--C--eEEEEecCC------CCCeEEEEEcCCCCEEEEEeCC
Q 002519 756 -VF--KGGTAQMRFQPHLGRYLAAAA-ENVVSILDAET--Q--ACRLSLQGH------TKPIDSVCWDPSGELLASVSED 821 (913)
Q Consensus 756 -~~--~~~~~~v~~s~~~~~ll~~~~-dg~I~i~D~~t--~--~~~~~l~~h------~~~V~sl~~spdg~~l~s~s~d 821 (913)
.. ..+...+.|+|++.+++++.. ++.|.+||+.. + +.+..+..+ ......+.|+|++++|+++...
T Consensus 169 ~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~ 248 (330)
T PRK11028 169 VTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRT 248 (330)
T ss_pred eecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCC
Confidence 11 123457899999999988876 89999999873 3 333333321 1223468899999998888654
Q ss_pred --eEEEEECCCCC-CCceEEEeecCCCceEEEEEeCCCCEEEEEEc-CCeEEEEECC
Q 002519 822 --SVRVWTVGSGS-EGECVHELSCNGNKFHSCVFHPTYPSLLVIGC-YQSLELWNMS 874 (913)
Q Consensus 822 --~I~vwdl~~~~-~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~-dg~I~iwd~~ 874 (913)
.|.+|++.... ..+.+..+.. ......+.|+|+|++|+++.. +++|.+|+++
T Consensus 249 ~~~I~v~~i~~~~~~~~~~~~~~~-~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 249 ASLISVFSVSEDGSVLSFEGHQPT-ETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred CCeEEEEEEeCCCCeEEEeEEEec-cccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 89999996543 2233333333 234567899999999998876 7899999874
No 172
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.76 E-value=1.3e-16 Score=184.05 Aligned_cols=279 Identities=15% Similarity=0.216 Sum_probs=208.4
Q ss_pred CCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccC---CCCeEEEEECC--CCCEEEEEeCCCeEEEEEcCCC
Q 002519 633 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEH---SSLITDVRFSP--SMPRLATSSFDKTVRVWDADNP 707 (913)
Q Consensus 633 ~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h---~~~V~~l~fsp--dg~~Lasgs~Dg~V~Iwdl~~~ 707 (913)
...-..+.|+|-...++++...-+|+|||.+.++....|..+ ...|+.+.+-. |..+|++|+.||.||||+-...
T Consensus 1064 ~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~ 1143 (1387)
T KOG1517|consen 1064 NQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYAD 1143 (1387)
T ss_pred CCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccccc
Confidence 335667888998889999987889999999999888877654 45688888865 4568999999999999975432
Q ss_pred C----ceeEEecc-------CCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeCCceE----EE-EecCCC
Q 002519 708 G----YSLRTFMG-------HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQ----MR-FQPHLG 771 (913)
Q Consensus 708 ~----~~~~~~~~-------h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~----v~-~s~~~~ 771 (913)
. +.+..+.+ ..+.-.-++|....++|+++| +-..|+|||.....++..+..+..+ +. ....++
T Consensus 1144 ~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tG-d~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn 1222 (1387)
T KOG1517|consen 1144 KWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTG-DVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGN 1222 (1387)
T ss_pred ccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecC-CeeEEEEEecccceeEeecccCCCccceeecccccCCc
Confidence 2 22222221 111113367887777777555 4789999999999888877654322 22 223468
Q ss_pred EEEEEEcCCeEEEEECCCCe---EEEEecCCCCC--eEEEEEcCCCC-EEEEEeCC-eEEEEECCCCCCCceEEEeecC-
Q 002519 772 RYLAAAAENVVSILDAETQA---CRLSLQGHTKP--IDSVCWDPSGE-LLASVSED-SVRVWTVGSGSEGECVHELSCN- 843 (913)
Q Consensus 772 ~ll~~~~dg~I~i~D~~t~~---~~~~l~~h~~~--V~sl~~spdg~-~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~- 843 (913)
.+++|..||.|++||.+... .+...+.|... |..+.+-+.|- .|++|+.+ .|++||++.......+.....-
T Consensus 1223 ~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~ 1302 (1387)
T KOG1517|consen 1223 IIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWE 1302 (1387)
T ss_pred eEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccc
Confidence 88999999999999998753 56667778877 99999998776 48888888 9999999985222222222211
Q ss_pred -CCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEcc-------cCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 002519 844 -GNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTA-------HEGLIAALAVSTETGYVASASHDKFVKLWK 913 (913)
Q Consensus 844 -~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~-------h~~~V~~l~~spdg~~Lasgs~DG~I~IWd 913 (913)
+...+++..|+..+.|++|+. +.|+||++.......+.. ..+.+.|++|+|..-++|+|+.|.+|.||.
T Consensus 1303 yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs 1379 (1387)
T KOG1517|consen 1303 YGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYS 1379 (1387)
T ss_pred cCccceeeeeccCCCeeeecCc-ceEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEee
Confidence 335899999999998988888 999999998776553333 345789999999999999999999999983
No 173
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.76 E-value=1e-16 Score=167.74 Aligned_cols=234 Identities=16% Similarity=0.255 Sum_probs=182.6
Q ss_pred CCCEEEEE---eCCCcEEEEECC-CCce---eeEeccCCCCeEEEEECCC-CCEEEEEeCCCeEEEEEcCCCC------c
Q 002519 644 DGKLLATG---GHDKKAVLWHTD-TLKS---KTNLEEHSSLITDVRFSPS-MPRLATSSFDKTVRVWDADNPG------Y 709 (913)
Q Consensus 644 dg~~Lasg---s~Dg~V~vwd~~-~~~~---~~~l~~h~~~V~~l~fspd-g~~Lasgs~Dg~V~Iwdl~~~~------~ 709 (913)
+.++||+. +..|...|.-+. +|+. .-.+.+|++.|.+++|+|. ...||+||+|.+|.||.+...+ .
T Consensus 43 NPkfiAvi~easgGgaf~ViPl~k~Gr~d~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~lte 122 (472)
T KOG0303|consen 43 NPKFVAVIIEASGGGAFLVIPLVKTGRMDASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTE 122 (472)
T ss_pred CCceEEEEEecCCCcceeecccccccccCCCCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCccc
Confidence 44566552 223344444332 3332 3356799999999999995 5589999999999999997533 4
Q ss_pred eeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEee--CCceEEEEecCCCEEEEEEcCCeEEEEEC
Q 002519 710 SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK--GGTAQMRFQPHLGRYLAAAAENVVSILDA 787 (913)
Q Consensus 710 ~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~--~~~~~v~~s~~~~~ll~~~~dg~I~i~D~ 787 (913)
.+..+.+|...|--+.|+|...++|++++.|.+|.+||+.+++.+..+. .-+.++.|+.+|..+++++.|..|+|||.
T Consensus 123 pvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dp 202 (472)
T KOG0303|consen 123 PVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDP 202 (472)
T ss_pred ceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcC
Confidence 5778899999999999999999999999999999999999998776665 34677899999999999999999999999
Q ss_pred CCCeEEEEecCCCCC-eEEEEEcCCCCEEEEEeCC----eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEEE
Q 002519 788 ETQACRLSLQGHTKP-IDSVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVI 862 (913)
Q Consensus 788 ~t~~~~~~l~~h~~~-V~sl~~spdg~~l~s~s~d----~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~ 862 (913)
++++.+..-.+|.+. -..+.|..+|.++.+|-.. .+-+||-...++...+.++.. .+.|.---|.+|...|+.+
T Consensus 203 r~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDt-SnGvl~PFyD~dt~ivYl~ 281 (472)
T KOG0303|consen 203 RRGTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDT-SNGVLLPFYDPDTSIVYLC 281 (472)
T ss_pred CCCcEeeecccccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEecc-CCceEEeeecCCCCEEEEE
Confidence 999999988888763 4456688888866666433 789999988777766666665 4456666688888877655
Q ss_pred E-cCCeEEEEECCCCcE
Q 002519 863 G-CYQSLELWNMSENKT 878 (913)
Q Consensus 863 s-~dg~I~iwd~~~~~~ 878 (913)
+ .|+.|+.|.+.....
T Consensus 282 GKGD~~IRYyEit~d~P 298 (472)
T KOG0303|consen 282 GKGDSSIRYFEITNEPP 298 (472)
T ss_pred ecCCcceEEEEecCCCc
Confidence 5 688999999987763
No 174
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.75 E-value=3.4e-17 Score=167.86 Aligned_cols=240 Identities=21% Similarity=0.330 Sum_probs=181.0
Q ss_pred cCCCCEEEEEEecCC----CEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCC-CEEEEEeCCCeEEEEEcC
Q 002519 631 ASTSKVICCHFSSDG----KLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSM-PRLATSSFDKTVRVWDAD 705 (913)
Q Consensus 631 ~H~~~V~~l~fspdg----~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg-~~Lasgs~Dg~V~Iwdl~ 705 (913)
.|....+.|+|+-|. .+||+|+.-|.|+|.|+.+++....+.+|...|..|+|+|+. .+|+++|.|..||+|++.
T Consensus 87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~ 166 (385)
T KOG1034|consen 87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQ 166 (385)
T ss_pred CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEecc
Confidence 467778888887643 489999999999999999999999999999999999999986 588999999999999999
Q ss_pred CCCceeEEec---cCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEE---------------eeC--------
Q 002519 706 NPGYSLRTFM---GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV---------------FKG-------- 759 (913)
Q Consensus 706 ~~~~~~~~~~---~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~---------------~~~-------- 759 (913)
+ ..++..|. +|.+.|.+++|+++++ .|++|+.|..|++|++...+.... |..
T Consensus 167 ~-~~Cv~VfGG~egHrdeVLSvD~~~~gd-~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~f 244 (385)
T KOG1034|consen 167 T-DVCVAVFGGVEGHRDEVLSVDFSLDGD-RIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDF 244 (385)
T ss_pred C-CeEEEEecccccccCcEEEEEEcCCCC-eeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccc
Confidence 8 67776664 7999999999999988 556999999999999984332111 100
Q ss_pred --------CceEEEEecCCCEEEEEEcCCeEEEEECC-CCe-------------EEEEecCCCCCeEE--EEEcCCCCEE
Q 002519 760 --------GTAQMRFQPHLGRYLAAAAENVVSILDAE-TQA-------------CRLSLQGHTKPIDS--VCWDPSGELL 815 (913)
Q Consensus 760 --------~~~~v~~s~~~~~ll~~~~dg~I~i~D~~-t~~-------------~~~~l~~h~~~V~s--l~~spdg~~l 815 (913)
.+.+++| -++++++-+.++.|..|..- -.+ .+.++.-....|.- .+|++-.++|
T Consensus 245 st~diHrnyVDCvrw--~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~l 322 (385)
T KOG1034|consen 245 STTDIHRNYVDCVRW--FGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKML 322 (385)
T ss_pred cccccccchHHHHHH--HhhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHH
Confidence 0011111 13567777779999999762 111 22223333334444 4556678899
Q ss_pred EEEeCC-eEEEEECCCCCCCceEEE-eecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 002519 816 ASVSED-SVRVWTVGSGSEGECVHE-LSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMS 874 (913)
Q Consensus 816 ~s~s~d-~I~vwdl~~~~~~~~i~~-~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~ 874 (913)
|.|... .|.+||++..+...+... .......|...+|+.|+..|+..+.|+.|.-||..
T Consensus 323 a~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 323 ALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred hhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 999988 999999988765433222 22235668899999999999999999999999864
No 175
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.75 E-value=2.1e-16 Score=160.85 Aligned_cols=238 Identities=22% Similarity=0.348 Sum_probs=169.9
Q ss_pred ccceeeeEeecCCCCEEEEEEec--CCCEEEEEeCCCcEEEEECC---------CCceeeEeccCCCCeEEEEECCC--C
Q 002519 621 FSFKEANSVRASTSKVICCHFSS--DGKLLATGGHDKKAVLWHTD---------TLKSKTNLEEHSSLITDVRFSPS--M 687 (913)
Q Consensus 621 ~~~~~~~~l~~H~~~V~~l~fsp--dg~~Lasgs~Dg~V~vwd~~---------~~~~~~~l~~h~~~V~~l~fspd--g 687 (913)
.++......+.|.+.|..|.|.+ -|..+|+++.|++|+||.-. ......++......|++|.|.|. |
T Consensus 47 ~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlG 126 (361)
T KOG2445|consen 47 GTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLG 126 (361)
T ss_pred CceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcc
Confidence 47888899999999999999965 68999999999999999752 23345667778889999999986 6
Q ss_pred CEEEEEeCCCeEEEEEcCCCCcee-----EE-------eccCCCCeEEEEEcCCC--CeEEEEEeCC-----CcEEEEEc
Q 002519 688 PRLATSSFDKTVRVWDADNPGYSL-----RT-------FMGHSASVMSLDFHPNK--DDLICSCDGD-----GEIRYWSI 748 (913)
Q Consensus 688 ~~Lasgs~Dg~V~Iwdl~~~~~~~-----~~-------~~~h~~~V~sl~fsp~~--~~ll~sgs~D-----g~I~iwdl 748 (913)
-.||+++.||+||||+.-+..... .. ...+.....|+.|+|.. ..+|+.|+.+ +.++||..
T Consensus 127 LklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~ 206 (361)
T KOG2445|consen 127 LKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEY 206 (361)
T ss_pred eEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEe
Confidence 689999999999999987633211 11 11355566777777531 2245555433 23444432
Q ss_pred CCCeeeEEeeCCceEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCC----CCEEEEEeCCeEE
Q 002519 749 NNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPS----GELLASVSEDSVR 824 (913)
Q Consensus 749 ~~~~~~~~~~~~~~~v~~s~~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spd----g~~l~s~s~d~I~ 824 (913)
... .+....+.++.+|.++|+.|+|.|+ ..+|++++.|.|+
T Consensus 207 ~e~-----------------------------------~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDgv~ 251 (361)
T KOG2445|consen 207 NEN-----------------------------------GRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDGVR 251 (361)
T ss_pred cCC-----------------------------------cceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCcEE
Confidence 211 1112344566789999999999995 3478889988999
Q ss_pred EEECCCC-----------------CCCceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC---CcEEEEccc
Q 002519 825 VWTVGSG-----------------SEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSE---NKTMTLTAH 884 (913)
Q Consensus 825 vwdl~~~-----------------~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~---~~~~~~~~h 884 (913)
||.++.. -....+..+..|.+.|..+.|.-.|..|.+.|.||.|++|...- .++.....-
T Consensus 252 I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany~n~~kC~sv~~~ 331 (361)
T KOG2445|consen 252 IFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANYNNLWKCTSVLKA 331 (361)
T ss_pred EEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhhhhhheeeeEEec
Confidence 9998731 12345667888999999999999999999999999999997643 234433333
Q ss_pred CCCeEEEEE
Q 002519 885 EGLIAALAV 893 (913)
Q Consensus 885 ~~~V~~l~~ 893 (913)
++.|....|
T Consensus 332 e~~~~~~~~ 340 (361)
T KOG2445|consen 332 EGSVTKPDF 340 (361)
T ss_pred cCCCCCccc
Confidence 344443333
No 176
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.75 E-value=9.4e-16 Score=179.76 Aligned_cols=293 Identities=19% Similarity=0.228 Sum_probs=208.5
Q ss_pred ccceeeeEeecCCCCEEEEEEecCC-CEEEEEeCCCcEEEEECCCC-------ceeeEeccCCCCeEEEEECCCCCEEEE
Q 002519 621 FSFKEANSVRASTSKVICCHFSSDG-KLLATGGHDKKAVLWHTDTL-------KSKTNLEEHSSLITDVRFSPSMPRLAT 692 (913)
Q Consensus 621 ~~~~~~~~l~~H~~~V~~l~fspdg-~~Lasgs~Dg~V~vwd~~~~-------~~~~~l~~h~~~V~~l~fspdg~~Las 692 (913)
..-..+..+..|...|..++.++.. .+|++|+.||+|+|||+... +...++......+.++.+.+.+..+|+
T Consensus 1036 p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av 1115 (1431)
T KOG1240|consen 1036 PRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAV 1115 (1431)
T ss_pred ccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEE
Confidence 3457888899999999999988755 89999999999999998632 233344445788999999999999999
Q ss_pred EeCCCeEEEEEcCCCC--c----eeEEeccC-CCCeE-EEEEcCCCC-eEEEEEeCCCcEEEEEcCCCeeeEEee-----
Q 002519 693 SSFDKTVRVWDADNPG--Y----SLRTFMGH-SASVM-SLDFHPNKD-DLICSCDGDGEIRYWSINNGSCTRVFK----- 758 (913)
Q Consensus 693 gs~Dg~V~Iwdl~~~~--~----~~~~~~~h-~~~V~-sl~fsp~~~-~ll~sgs~Dg~I~iwdl~~~~~~~~~~----- 758 (913)
++.||.|++.+++-.. + ..+....+ .+.+. .-+|..... .+++.+...+.|..||+++......++
T Consensus 1116 ~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~h 1195 (1431)
T KOG1240|consen 1116 STKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRH 1195 (1431)
T ss_pred EcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccc
Confidence 9999999999997511 1 11111111 22233 333433323 367778888999999999876554443
Q ss_pred CCceEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEec-CCCCCeEEEEEcCCC---CEEEEEeC-C--eEEEEECCCC
Q 002519 759 GGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQ-GHTKPIDSVCWDPSG---ELLASVSE-D--SVRVWTVGSG 831 (913)
Q Consensus 759 ~~~~~v~~s~~~~~ll~~~~dg~I~i~D~~t~~~~~~l~-~h~~~V~sl~~spdg---~~l~s~s~-d--~I~vwdl~~~ 831 (913)
|-+++++.+|.+.+++.|+..|.+.+||++-+.++.... .+..+|+.++.+|-. .+.++++. . .|.+|++.++
T Consensus 1196 G~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g 1275 (1431)
T KOG1240|consen 1196 GLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETG 1275 (1431)
T ss_pred cceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccC
Confidence 457889999999999999999999999999988877665 245778888877733 35555554 3 8999999887
Q ss_pred CCCceEEEe----------e------cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE--E-------------
Q 002519 832 SEGECVHEL----------S------CNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM--T------------- 880 (913)
Q Consensus 832 ~~~~~i~~~----------~------~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~--~------------- 880 (913)
.....+..- . .+......+++...+..+++|+.|..|+.||....+.. .
T Consensus 1276 ~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~~~~ 1355 (1431)
T KOG1240|consen 1276 LRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYSTNSE 1355 (1431)
T ss_pred cceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccccccccCccccccccch
Confidence 332222111 0 11112344566667788999999999999997542211 0
Q ss_pred ------------------------------------------EcccCCCeEEEEEeCC-CCEEEEEeCCCcEEEeC
Q 002519 881 ------------------------------------------LTAHEGLIAALAVSTE-TGYVASASHDKFVKLWK 913 (913)
Q Consensus 881 ------------------------------------------~~~h~~~V~~l~~spd-g~~Lasgs~DG~I~IWd 913 (913)
-..|...|+++++... -.+|++++.||.|+||+
T Consensus 1356 s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1356 SYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred hccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCccEEEEecCCCeeeecC
Confidence 0116667888776543 35899999999999996
No 177
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.74 E-value=1.2e-16 Score=161.26 Aligned_cols=239 Identities=20% Similarity=0.369 Sum_probs=177.6
Q ss_pred ecCCCCEEEEEEecCCC-----EEEEEeCCCcEEEEECCCCceeeE---------eccCCCCeEEEEECC-CCCEEEEEe
Q 002519 630 RASTSKVICCHFSSDGK-----LLATGGHDKKAVLWHTDTLKSKTN---------LEEHSSLITDVRFSP-SMPRLATSS 694 (913)
Q Consensus 630 ~~H~~~V~~l~fspdg~-----~Lasgs~Dg~V~vwd~~~~~~~~~---------l~~h~~~V~~l~fsp-dg~~Lasgs 694 (913)
..|.-+++.+-|.|+.+ +|||++ ..+|||.+...+.... -..+..++++..|+. +-++|.++|
T Consensus 93 fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSS 170 (364)
T KOG0290|consen 93 FDHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSS 170 (364)
T ss_pred CCCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeec
Confidence 35888999999999763 666654 4799999874221111 124677899999986 566889999
Q ss_pred CCCeEEEEEcCCC--CceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEe-eC-----CceEEEE
Q 002519 695 FDKTVRVWDADNP--GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF-KG-----GTAQMRF 766 (913)
Q Consensus 695 ~Dg~V~Iwdl~~~--~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~-~~-----~~~~v~~ 766 (913)
-|-++.|||++++ +.....+..|..+|.+|+|...+..+|++++.||.||+||++..+....+ +. ....++|
T Consensus 171 iDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLsw 250 (364)
T KOG0290|consen 171 IDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSW 250 (364)
T ss_pred ccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeecc
Confidence 9999999999983 23456677899999999999998999999999999999999987654433 22 2234667
Q ss_pred ecCCCEEEEE-Ec-CCeEEEEECCCC-eEEEEecCCCCCeEEEEEcCCC-CEEEEEeCC-eEEEEECCCCCC---CceEE
Q 002519 767 QPHLGRYLAA-AA-ENVVSILDAETQ-ACRLSLQGHTKPIDSVCWDPSG-ELLASVSED-SVRVWTVGSGSE---GECVH 838 (913)
Q Consensus 767 s~~~~~ll~~-~~-dg~I~i~D~~t~-~~~~~l~~h~~~V~sl~~spdg-~~l~s~s~d-~I~vwdl~~~~~---~~~i~ 838 (913)
++.+..+++. .. ...|.|.|++.. .++..+.+|...|+.|+|.|.. ..|+++++| .+.|||+..... ...+.
T Consensus 251 nkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPil 330 (364)
T KOG0290|consen 251 NKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPIL 330 (364)
T ss_pred CcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchh
Confidence 7766555443 33 458999999986 6888999999999999999955 489999999 999999975422 12222
Q ss_pred EeecCCCceEEEEEeCCCCEEEEEEcCCeEEEE
Q 002519 839 ELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELW 871 (913)
Q Consensus 839 ~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iw 871 (913)
.+. .+..|..+.|++...-.++.+.++++.|.
T Consensus 331 ay~-a~~EVNqi~Ws~~~~Dwiai~~~kkleiL 362 (364)
T KOG0290|consen 331 AYT-AGGEVNQIQWSSSQPDWIAICFGKKLEIL 362 (364)
T ss_pred hhh-ccceeeeeeecccCCCEEEEEecCeeeEE
Confidence 233 46789999999755444444555555543
No 178
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.73 E-value=4.5e-16 Score=159.21 Aligned_cols=230 Identities=20% Similarity=0.310 Sum_probs=180.6
Q ss_pred CCCEEEEEEe-------cCCCEEEEEeCCCcEEEEECCCCceeeEecc--CCC---CeEEEEECCCCCEEEEEeCCCeEE
Q 002519 633 TSKVICCHFS-------SDGKLLATGGHDKKAVLWHTDTLKSKTNLEE--HSS---LITDVRFSPSMPRLATSSFDKTVR 700 (913)
Q Consensus 633 ~~~V~~l~fs-------pdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~--h~~---~V~~l~fspdg~~Lasgs~Dg~V~ 700 (913)
...|+..+|- |+..++|+.+.+.-|.+||.-+|+....+++ |-. ...+|+|+|||..|++|- ...|+
T Consensus 104 g~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcir 182 (406)
T KOG2919|consen 104 GETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIR 182 (406)
T ss_pred CCEEEEEEeeeccccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEE
Confidence 3457777775 6778999999999999999999998888775 322 356899999999998775 67899
Q ss_pred EEEcCCCCceeE--Eec-----cCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEe---eCCceEEEEecCC
Q 002519 701 VWDADNPGYSLR--TFM-----GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF---KGGTAQMRFQPHL 770 (913)
Q Consensus 701 Iwdl~~~~~~~~--~~~-----~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~---~~~~~~v~~s~~~ 770 (913)
|+|+..++.... ... +..+.|.|++|+|.....++.++....+-||.-.....+..+ .++++.++|.+++
T Consensus 183 vFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edG 262 (406)
T KOG2919|consen 183 VFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDG 262 (406)
T ss_pred EeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCc
Confidence 999955454322 222 336789999999998888889999999999888777766655 4678999999999
Q ss_pred CEEEEEEc-CCeEEEEECCCC-eEEEEecCCCC-CeE--EEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEeecCC
Q 002519 771 GRYLAAAA-ENVVSILDAETQ-ACRLSLQGHTK-PID--SVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNG 844 (913)
Q Consensus 771 ~~ll~~~~-dg~I~i~D~~t~-~~~~~l~~h~~-~V~--sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~ 844 (913)
+++++++. +..|.+||++.. .++..+..|.. .-- -+...|++++|++|+.+ .|++||+.... ..+..+..+.
T Consensus 263 n~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~g--n~~sv~~~~s 340 (406)
T KOG2919|consen 263 NKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLG--NEVSVTGNYS 340 (406)
T ss_pred CeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCC--Cccccccccc
Confidence 99999987 789999999975 56777777765 222 34556889999999888 99999998632 3455566677
Q ss_pred CceEEEEEeCCCCEEEEEEcC
Q 002519 845 NKFHSCVFHPTYPSLLVIGCY 865 (913)
Q Consensus 845 ~~i~~l~~sp~g~~l~s~s~d 865 (913)
..++.++++|--..+++++..
T Consensus 341 d~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 341 DTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred ccccceecCcccceeeeccCc
Confidence 889999999997777776654
No 179
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.73 E-value=3.1e-17 Score=179.02 Aligned_cols=241 Identities=22% Similarity=0.298 Sum_probs=177.7
Q ss_pred eeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCC-------CCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCC
Q 002519 668 KTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN-------PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD 740 (913)
Q Consensus 668 ~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~-------~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~D 740 (913)
..++..|...|+.+.|.+-...|++++.||+|.+|++.. .-+.+.+|.+|.++|.|+++.+++.+++ +|+-|
T Consensus 287 k~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~y-sgg~D 365 (577)
T KOG0642|consen 287 KFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCY-SGGID 365 (577)
T ss_pred eeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEE-eeccC
Confidence 347778999999999999999999999999999999932 1246789999999999999999887665 99999
Q ss_pred CcEEEEEcCCC----------eeeEEeeC---CceEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCC--CCCeEE
Q 002519 741 GEIRYWSINNG----------SCTRVFKG---GTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGH--TKPIDS 805 (913)
Q Consensus 741 g~I~iwdl~~~----------~~~~~~~~---~~~~v~~s~~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h--~~~V~s 805 (913)
|+|++|++... .....+.+ .+..+.++.....++.++.||+|++|+.....+ .++... .+.-.+
T Consensus 366 g~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Pls 444 (577)
T KOG0642|consen 366 GTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLS 444 (577)
T ss_pred ceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcce
Confidence 99999976521 11122333 344578888888999999999999999877655 333321 222344
Q ss_pred EEEcCCCCEEEEEeCC--eEEEEECCCCCCCceEEEeec-------CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCC
Q 002519 806 VCWDPSGELLASVSED--SVRVWTVGSGSEGECVHELSC-------NGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSEN 876 (913)
Q Consensus 806 l~~spdg~~l~s~s~d--~I~vwdl~~~~~~~~i~~~~~-------~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~ 876 (913)
+.|-.....+...+.. ..-++++... ..+..+.. ....+..+.++|...+.+++..|+.|+++|..++
T Consensus 445 vd~~ss~~a~~~~s~~~~~~~~~~~ev~---s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~ 521 (577)
T KOG0642|consen 445 VDRTSSRPAHSLASFRFGYTSIDDMEVV---SDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTG 521 (577)
T ss_pred EeeccchhHhhhhhcccccccchhhhhh---hheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccccccc
Confidence 4444332111111111 2223333222 11221111 1234778899999999999999999999999999
Q ss_pred cEE-EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 002519 877 KTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 913 (913)
Q Consensus 877 ~~~-~~~~h~~~V~~l~~spdg~~Lasgs~DG~I~IWd 913 (913)
+++ ...+|...|+++++.|+|.+|+++++||.|++|+
T Consensus 522 ~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~k 559 (577)
T KOG0642|consen 522 KILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWK 559 (577)
T ss_pred ccchheeeccceecceeecCCCceEEeecCCceeehhh
Confidence 988 7889999999999999999999999999999996
No 180
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.73 E-value=1.7e-16 Score=166.16 Aligned_cols=200 Identities=19% Similarity=0.317 Sum_probs=160.1
Q ss_pred eEeecCCCCEEEEEEec-CCCEEEEEeCCCcEEEEECCCC-------ceeeEeccCCCCeEEEEECCCC-CEEEEEeCCC
Q 002519 627 NSVRASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTDTL-------KSKTNLEEHSSLITDVRFSPSM-PRLATSSFDK 697 (913)
Q Consensus 627 ~~l~~H~~~V~~l~fsp-dg~~Lasgs~Dg~V~vwd~~~~-------~~~~~l~~h~~~V~~l~fspdg-~~Lasgs~Dg 697 (913)
-.+.+|++.|.+++|+| +...||+|+.|.+|.||.+... +.+..|.+|...|--|.|+|.. +.|++++.|.
T Consensus 75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn 154 (472)
T KOG0303|consen 75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDN 154 (472)
T ss_pred CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCc
Confidence 35789999999999999 5679999999999999998643 4577889999999999999974 5789999999
Q ss_pred eEEEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeCC----ceEEEEecCCCEE
Q 002519 698 TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG----TAQMRFQPHLGRY 773 (913)
Q Consensus 698 ~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~----~~~v~~s~~~~~l 773 (913)
+|.||++.+ +..+.++. |.+.|++++|+-+|. +|++.+.|..|||||.++++.+..-.++ ...+.|..++. +
T Consensus 155 ~v~iWnv~t-geali~l~-hpd~i~S~sfn~dGs-~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~-i 230 (472)
T KOG0303|consen 155 TVSIWNVGT-GEALITLD-HPDMVYSMSFNRDGS-LLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGK-I 230 (472)
T ss_pred eEEEEeccC-CceeeecC-CCCeEEEEEeccCCc-eeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCc-e
Confidence 999999998 55555565 999999999999977 6679999999999999999988765432 23466777777 5
Q ss_pred EEEEc----CCeEEEEECCCCeE---EEEecCCCCCeEEEEEcCCCCEEEEEeCC--eEEEEECCCC
Q 002519 774 LAAAA----ENVVSILDAETQAC---RLSLQGHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSG 831 (913)
Q Consensus 774 l~~~~----dg~I~i~D~~t~~~---~~~l~~h~~~V~sl~~spdg~~l~s~s~d--~I~vwdl~~~ 831 (913)
++++. +..+.+||...... ..++. ..+.|.---|++|.++|+.++.+ .||.|.+...
T Consensus 231 ~tTGfsr~seRq~aLwdp~nl~eP~~~~elD-tSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d 296 (472)
T KOG0303|consen 231 FTTGFSRMSERQIALWDPNNLEEPIALQELD-TSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNE 296 (472)
T ss_pred eeeccccccccceeccCcccccCcceeEEec-cCCceEEeeecCCCCEEEEEecCCcceEEEEecCC
Confidence 55543 67899998776532 23333 34556666788898888777765 9999999754
No 181
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=3.9e-16 Score=153.88 Aligned_cols=227 Identities=19% Similarity=0.270 Sum_probs=172.0
Q ss_pred CeEEEEECCCCCEEEEEeCCCeEEEEEcCC---------CCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEE
Q 002519 677 LITDVRFSPSMPRLATSSFDKTVRVWDADN---------PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWS 747 (913)
Q Consensus 677 ~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~---------~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwd 747 (913)
.|.+-+|+|.+++|++|+.+|.|.|+.+.+ ++..+..+.+|+++|+.++|+. . +|++|+ ||.|+-|.
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d--~-~Lls~g-dG~V~gw~ 87 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHD--D-FLLSGG-DGLVYGWE 87 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeeh--h-heeecc-CceEEEee
Confidence 466678999999999999999999999864 2344566689999999999993 3 554666 69999998
Q ss_pred cCCCee----eEEe------------eCCceEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCC
Q 002519 748 INNGSC----TRVF------------KGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPS 811 (913)
Q Consensus 748 l~~~~~----~~~~------------~~~~~~v~~s~~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spd 811 (913)
.+.... .+.+ -..++.+...|..+.++.++.|+.++.||+++++...++++|++.|.+++--..
T Consensus 88 W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~ 167 (325)
T KOG0649|consen 88 WNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNA 167 (325)
T ss_pred ehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeeccc
Confidence 765322 1100 124567788899999999999999999999999999999999999999998555
Q ss_pred CCEEEEEeCC-eEEEEECCCCCCCceEEEeec-------CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEcc
Q 002519 812 GELLASVSED-SVRVWTVGSGSEGECVHELSC-------NGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTA 883 (913)
Q Consensus 812 g~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~-------~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~ 883 (913)
..-|++|++| ++||||.++.+....+...+. .+..|.+++.+.+ ++ +++....+.+|+++..++..+..
T Consensus 168 ~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~ed--Wl-vCGgGp~lslwhLrsse~t~vfp 244 (325)
T KOG0649|consen 168 NGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNED--WL-VCGGGPKLSLWHLRSSESTCVFP 244 (325)
T ss_pred CcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCc--eE-EecCCCceeEEeccCCCceEEEe
Confidence 5678899999 999999998854444433322 1234555555443 44 44555689999999999998888
Q ss_pred cCCCeEEEEEeCCCCEEEEEeCCCcEEEe
Q 002519 884 HEGLIAALAVSTETGYVASASHDKFVKLW 912 (913)
Q Consensus 884 h~~~V~~l~~spdg~~Lasgs~DG~I~IW 912 (913)
....|..+.|..| .+++++....|.-|
T Consensus 245 ipa~v~~v~F~~d--~vl~~G~g~~v~~~ 271 (325)
T KOG0649|consen 245 IPARVHLVDFVDD--CVLIGGEGNHVQSY 271 (325)
T ss_pred cccceeEeeeecc--eEEEeccccceeee
Confidence 8888999999766 56667655555544
No 182
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=2.3e-16 Score=162.84 Aligned_cols=249 Identities=16% Similarity=0.199 Sum_probs=178.3
Q ss_pred eEeecCCCCEEEEEEec--CCCEEEEEeCCCcEEEEECCCCceeeE--eccCC-CCeEEEEECCCCCEEEEEeC----CC
Q 002519 627 NSVRASTSKVICCHFSS--DGKLLATGGHDKKAVLWHTDTLKSKTN--LEEHS-SLITDVRFSPSMPRLATSSF----DK 697 (913)
Q Consensus 627 ~~l~~H~~~V~~l~fsp--dg~~Lasgs~Dg~V~vwd~~~~~~~~~--l~~h~-~~V~~l~fspdg~~Lasgs~----Dg 697 (913)
..+++|...+..++|.. ....+.+|+.||+|++||++....... +..+. .+..|++.+..+..+++|.. |-
T Consensus 64 ~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A 143 (376)
T KOG1188|consen 64 EEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDA 143 (376)
T ss_pred heecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCce
Confidence 34666777778888876 467899999999999999986554443 44555 56778887777888888864 67
Q ss_pred eEEEEEcCCCCceeEE-eccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCe----eeEEee--CCceEEEEecCC
Q 002519 698 TVRVWDADNPGYSLRT-FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS----CTRVFK--GGTAQMRFQPHL 770 (913)
Q Consensus 698 ~V~Iwdl~~~~~~~~~-~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~----~~~~~~--~~~~~v~~s~~~ 770 (913)
.|.+||++.....++. ...|.+.|++|+|+|.+..+|++|+.||.|.+||++... .+.++. ..+..+.|..++
T Consensus 144 ~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ 223 (376)
T KOG1188|consen 144 SVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKK 223 (376)
T ss_pred EEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCC
Confidence 8999999986664554 457999999999999999999999999999999998653 222333 235567787765
Q ss_pred -CEEEEEEcCCeEEEEECCCCeEEEEecCCC------------CCeEEEEEcCCCCEEEEEeCC--eEEEEEC---CCCC
Q 002519 771 -GRYLAAAAENVVSILDAETQACRLSLQGHT------------KPIDSVCWDPSGELLASVSED--SVRVWTV---GSGS 832 (913)
Q Consensus 771 -~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~------------~~V~sl~~spdg~~l~s~s~d--~I~vwdl---~~~~ 832 (913)
+++.+.+..+++.+|+++.+.+...+.... ..+.......++.+++.++.+ ...++-+ .++.
T Consensus 224 ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~ 303 (376)
T KOG1188|consen 224 YKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGS 303 (376)
T ss_pred cceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeeccccc
Confidence 578888999999999999887665544221 112222112234455555443 4444433 3444
Q ss_pred CCceEEEeec-CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 002519 833 EGECVHELSC-NGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSE 875 (913)
Q Consensus 833 ~~~~i~~~~~-~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~ 875 (913)
....+..+.+ |...|.++.|.-.+.++++|+.||.|.+|....
T Consensus 304 ~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~~d 347 (376)
T KOG1188|consen 304 LLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKVED 347 (376)
T ss_pred ccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEecCC
Confidence 4444555554 566788889998999999999999999998643
No 183
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.73 E-value=1.2e-15 Score=175.41 Aligned_cols=257 Identities=17% Similarity=0.267 Sum_probs=185.2
Q ss_pred CcEEEEECCCCceeeEeccCCCCeEEEEECCCC-CEEEEEeCCCeEEEEEcCCCCce-----eEEeccCCCCeEEEEEcC
Q 002519 655 KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSM-PRLATSSFDKTVRVWDADNPGYS-----LRTFMGHSASVMSLDFHP 728 (913)
Q Consensus 655 g~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg-~~Lasgs~Dg~V~Iwdl~~~~~~-----~~~~~~h~~~V~sl~fsp 728 (913)
+.+.||+++........-.-...|+|++|+|.. .+||.|+.+|.|.+||++..... ......|..+|+.+.|..
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~ 301 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQ 301 (555)
T ss_pred ceEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEec
Confidence 479999998653333333456789999999964 57788888999999999875542 123346899999999976
Q ss_pred CCCe-EEEEEeCCCcEEEEEcCCCeeeE------E---------eeCCceEEEEecCC-CEEEEEEcCCeEEEEECCCC-
Q 002519 729 NKDD-LICSCDGDGEIRYWSINNGSCTR------V---------FKGGTAQMRFQPHL-GRYLAAAAENVVSILDAETQ- 790 (913)
Q Consensus 729 ~~~~-ll~sgs~Dg~I~iwdl~~~~~~~------~---------~~~~~~~v~~s~~~-~~ll~~~~dg~I~i~D~~t~- 790 (913)
+... -|++++.||.|+.|+++.-.... . -...+..+.|.+.. ..+++|+.+|.|..-+....
T Consensus 302 ~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~ 381 (555)
T KOG1587|consen 302 NEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYT 381 (555)
T ss_pred cCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCc
Confidence 5433 24488889999999987543310 0 11245667787765 56778888898877433322
Q ss_pred -------eEEEEecCCCCCeEEEEEcCCCC-EEEEEeCCeEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCE-EEE
Q 002519 791 -------ACRLSLQGHTKPIDSVCWDPSGE-LLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPS-LLV 861 (913)
Q Consensus 791 -------~~~~~l~~h~~~V~sl~~spdg~-~l~s~s~d~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~-l~s 861 (913)
+....+..|.++|+++.++|-+. +|.++++.+|+||.... ....+..+..+...+++++|||.... |++
T Consensus 382 ~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~--~~~Pl~~~~~~~~~v~~vaWSptrpavF~~ 459 (555)
T KOG1587|consen 382 PAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDV--IASPLLSLDSSPDYVTDVAWSPTRPAVFAT 459 (555)
T ss_pred ccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccC--CCCcchhhhhccceeeeeEEcCcCceEEEE
Confidence 12334556889999999999777 45555533999999862 22555666666777999999998754 555
Q ss_pred EEcCCeEEEEECCCCcEE---EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 002519 862 IGCYQSLELWNMSENKTM---TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 913 (913)
Q Consensus 862 ~s~dg~I~iwd~~~~~~~---~~~~h~~~V~~l~~spdg~~Lasgs~DG~I~IWd 913 (913)
+..||.|.|||+...... ....+....+.+.|+++|++|++|...|.|+||+
T Consensus 460 ~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~ 514 (555)
T KOG1587|consen 460 VDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILK 514 (555)
T ss_pred EcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEE
Confidence 666999999998654432 4444567778888999999999999999999985
No 184
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=1.9e-15 Score=149.03 Aligned_cols=268 Identities=16% Similarity=0.227 Sum_probs=192.1
Q ss_pred CCEEEEEEecCCCEEEEEeCCCcEEEEECCC----------CceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEE
Q 002519 634 SKVICCHFSSDGKLLATGGHDKKAVLWHTDT----------LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 703 (913)
Q Consensus 634 ~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~----------~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwd 703 (913)
..|.+-+|+|.+++|++|..+|.|.|+.+.+ ...+..+.+|+++|+.++|+ ..+|++|+ ||.|+-|.
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~ 87 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWE 87 (325)
T ss_pred HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEee
Confidence 3577788999999999999999999998853 22345567999999999998 34666666 59999998
Q ss_pred cCCCCcee-----EEe-------ccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeCCceEE---EEec
Q 002519 704 ADNPGYSL-----RTF-------MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQM---RFQP 768 (913)
Q Consensus 704 l~~~~~~~-----~~~-------~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v---~~s~ 768 (913)
.+...+.. ... .-.--.|+++...|..+.+|.+ +.|+.++.||+++|+..+.++++...+ ....
T Consensus 88 W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~A-gGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~ 166 (325)
T KOG0649|consen 88 WNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFA-GGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRN 166 (325)
T ss_pred ehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEe-cCCeEEEEEEecCCEEEEEEcCCcceeeeeeecc
Confidence 86522210 000 1122468899999987777744 479999999999999999999987543 3445
Q ss_pred CCCEEEEEEcCCeEEEEECCCCeEEEEecCCC----------CCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCCceEE
Q 002519 769 HLGRYLAAAAENVVSILDAETQACRLSLQGHT----------KPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVH 838 (913)
Q Consensus 769 ~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~----------~~V~sl~~spdg~~l~s~s~d~I~vwdl~~~~~~~~i~ 838 (913)
..+.+++++.||++++||.++.+++..+.... .+|-+++. +..++++|+.-.+.+|.+++.+ ..++.
T Consensus 167 ~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGgGp~lslwhLrsse-~t~vf 243 (325)
T KOG0649|consen 167 ANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGGGPKLSLWHLRSSE-STCVF 243 (325)
T ss_pred cCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecCCCceeEEeccCCC-ceEEE
Confidence 56889999999999999999999988875422 23555544 5668887777799999998762 23443
Q ss_pred EeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEcccCCCeEEEEEeCC-CCEEEEEeCCCcEEEeC
Q 002519 839 ELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTE-TGYVASASHDKFVKLWK 913 (913)
Q Consensus 839 ~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spd-g~~Lasgs~DG~I~IWd 913 (913)
.+ ...+..|.|..+ .+++++..+.|.-|.+..--...+.......++..|+-. -++|..++...++.|++
T Consensus 244 pi---pa~v~~v~F~~d--~vl~~G~g~~v~~~~l~Gvl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~~ 314 (325)
T KOG0649|consen 244 PI---PARVHLVDFVDD--CVLIGGEGNHVQSYTLNGVLQANIPVESTACYSASWQTSPIKFISIAGFSNKLHILK 314 (325)
T ss_pred ec---ccceeEeeeecc--eEEEeccccceeeeeeccEEEEeccCCccceeeecccCCceEEEEecccceeeeeee
Confidence 33 456777888655 578888788898888765443344444444444444321 35666677777787763
No 185
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.70 E-value=5.8e-16 Score=167.24 Aligned_cols=259 Identities=17% Similarity=0.262 Sum_probs=190.2
Q ss_pred cCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEE-C-------CCCCEEEEEeCCCeEEEE
Q 002519 631 ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRF-S-------PSMPRLATSSFDKTVRVW 702 (913)
Q Consensus 631 ~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~f-s-------pdg~~Lasgs~Dg~V~Iw 702 (913)
.|...|.||.|+.....+.+++++-.+.-||+.+ .....+.-....|....+ - .....|+.++.||.+.|.
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~-~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il 90 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSR-DSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVIL 90 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeecccc-hhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEe
Confidence 4677788999998887777766444444444433 323322222222222221 1 123478889999999888
Q ss_pred EcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCee---eEEeeCCceEEEEecCCCEEEEEEcC
Q 002519 703 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC---TRVFKGGTAQMRFQPHLGRYLAAAAE 779 (913)
Q Consensus 703 dl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~---~~~~~~~~~~v~~s~~~~~ll~~~~d 779 (913)
+-. ++.-+.+..|.+.|.+-.|+|+|..++ ++++||.|++|.-. |.. +..+...+.+++|.|+.+.++.+. .
T Consensus 91 ~k~--~rVE~sv~AH~~A~~~gRW~~dGtgLl-t~GEDG~iKiWSrs-GMLRStl~Q~~~~v~c~~W~p~S~~vl~c~-g 165 (737)
T KOG1524|consen 91 NKS--ARVERSISAHAAAISSGRWSPDGAGLL-TAGEDGVIKIWSRS-GMLRSTVVQNEESIRCARWAPNSNSIVFCQ-G 165 (737)
T ss_pred ccc--chhhhhhhhhhhhhhhcccCCCCceee-eecCCceEEEEecc-chHHHHHhhcCceeEEEEECCCCCceEEec-C
Confidence 754 566777889999999999999998877 89999999999854 332 233456788999999988877654 4
Q ss_pred CeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCE
Q 002519 780 NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPS 858 (913)
Q Consensus 780 g~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~ 858 (913)
+.+.|--+.-...+...+.|++-|.++.|++..+++++|++| ..+|||-- ...+..-..|+.+|++++|.|+ +.
T Consensus 166 ~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~----G~~Lf~S~~~ey~ITSva~npd-~~ 240 (737)
T KOG1524|consen 166 GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ----GANLFTSAAEEYAITSVAFNPE-KD 240 (737)
T ss_pred CeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc----CcccccCChhccceeeeeeccc-cc
Confidence 566676777666777888999999999999999999999999 99999964 2556666778999999999999 44
Q ss_pred EEEEEcCCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEeCCCcEEE
Q 002519 859 LLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKL 911 (913)
Q Consensus 859 l~s~s~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~DG~I~I 911 (913)
+++++ .+++++ .....+.|..++|++||..++.|+..|.|.+
T Consensus 241 ~~v~S-~nt~R~----------~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 241 YLLWS-YNTARF----------SSPRVGSIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred eeeee-eeeeee----------cCCCccceEEEEEcCCCceeeccccCceEEE
Confidence 44444 344442 2345678999999999999999999887753
No 186
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=5.1e-15 Score=169.77 Aligned_cols=279 Identities=17% Similarity=0.296 Sum_probs=207.7
Q ss_pred cCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCC----CceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCC
Q 002519 631 ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT----LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN 706 (913)
Q Consensus 631 ~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~----~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~ 706 (913)
.|.-.++|.++||+++++|+|..||.|.||.--. ......++-|...|.++.|+++|.+|++|+..|.+.+|.+.+
T Consensus 203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T 282 (792)
T KOG1963|consen 203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLET 282 (792)
T ss_pred hhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecC
Confidence 4677799999999999999999999999996432 234567888999999999999999999999999999999998
Q ss_pred CCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEee--------------CCceEEEEecCCCE
Q 002519 707 PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK--------------GGTAQMRFQPHLGR 772 (913)
Q Consensus 707 ~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~--------------~~~~~v~~s~~~~~ 772 (913)
++ ...+..-.+.|..+.++||++.+. .+..|+.|.+....+......+. +-...++++|.-+.
T Consensus 283 ~~--kqfLPRLgs~I~~i~vS~ds~~~s-l~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~ 359 (792)
T KOG1963|consen 283 GK--KQFLPRLGSPILHIVVSPDSDLYS-LVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNS 359 (792)
T ss_pred CC--cccccccCCeeEEEEEcCCCCeEE-EEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCc
Confidence 54 445556778999999999987554 66679999998875544333221 22345788898888
Q ss_pred EEEEEcCCeEEEEECCCCeEEEEecC-----C------CCCeEEEEEcCCCCEEEEEe---------C-C-eEEEEECCC
Q 002519 773 YLAAAAENVVSILDAETQACRLSLQG-----H------TKPIDSVCWDPSGELLASVS---------E-D-SVRVWTVGS 830 (913)
Q Consensus 773 ll~~~~dg~I~i~D~~t~~~~~~l~~-----h------~~~V~sl~~spdg~~l~s~s---------~-d-~I~vwdl~~ 830 (913)
++..+..+.|.+||+-+.+.++.+.. + ...++.++.+-.|.++++.. + . .+++|-...
T Consensus 360 ~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~ 439 (792)
T KOG1963|consen 360 LVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNP 439 (792)
T ss_pred eeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcC
Confidence 99999999999999988766655431 1 22467778888899988874 1 2 689998865
Q ss_pred CCCCceE--EEeecCCCceEEEEE-eCCCC-EEEEEEcCCeEEEEECCCCc----------EE-EEcccCCCeEEEEEeC
Q 002519 831 GSEGECV--HELSCNGNKFHSCVF-HPTYP-SLLVIGCYQSLELWNMSENK----------TM-TLTAHEGLIAALAVST 895 (913)
Q Consensus 831 ~~~~~~i--~~~~~~~~~i~~l~~-sp~g~-~l~s~s~dg~I~iwd~~~~~----------~~-~~~~h~~~V~~l~~sp 895 (913)
....-.+ .....|+..+...++ ++... ..++++.||.++||-+...+ +. .-.-|..++.+++|+.
T Consensus 440 ~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~ 519 (792)
T KOG1963|consen 440 NSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQ 519 (792)
T ss_pred CcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcC
Confidence 5332222 223345655555444 44333 78999999999999883321 11 1123788999999999
Q ss_pred CCCEEEEEeCCCcEEEeC
Q 002519 896 ETGYVASASHDKFVKLWK 913 (913)
Q Consensus 896 dg~~Lasgs~DG~I~IWd 913 (913)
||..| +++.|++|.|||
T Consensus 520 dGsll-a~s~~~~Itiwd 536 (792)
T KOG1963|consen 520 DGSLL-AVSFDDTITIWD 536 (792)
T ss_pred CCcEE-EEecCCEEEEec
Confidence 99654 567788999997
No 187
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.69 E-value=1.4e-15 Score=167.43 Aligned_cols=236 Identities=15% Similarity=0.245 Sum_probs=175.4
Q ss_pred eeEeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEec-cCCCCeEEEEECCCCCEEEEEeCCCeEEEEEc
Q 002519 626 ANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE-EHSSLITDVRFSPSMPRLATSSFDKTVRVWDA 704 (913)
Q Consensus 626 ~~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~-~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl 704 (913)
..++++|.+.|+|++|+.||+++|+|+.|+.|.||.-.- ...++ .|.+.|.|+.|+|-...|++|+... .-+|..
T Consensus 46 lqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~kl---EG~LkYSH~D~IQCMsFNP~~h~LasCsLsd-FglWS~ 121 (1081)
T KOG1538|consen 46 LQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKL---EGILKYSHNDAIQCMSFNPITHQLASCSLSD-FGLWSP 121 (1081)
T ss_pred ccccccccceEEEEEEccCCceeccCCCceeEEEecccc---cceeeeccCCeeeEeecCchHHHhhhcchhh-ccccCh
Confidence 456889999999999999999999999999999997542 22222 5899999999999999999998643 678988
Q ss_pred CCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEee-----CCceEEEEecCCC-----EEE
Q 002519 705 DNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK-----GGTAQMRFQPHLG-----RYL 774 (913)
Q Consensus 705 ~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~-----~~~~~v~~s~~~~-----~ll 774 (913)
+. +.+...+ ....|.+++|..||. +++.|-.||+|.|-+-.....++.-. ..+.+++|+|..+ .+.
T Consensus 122 ~q--K~V~K~k-ss~R~~~CsWtnDGq-ylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~a 197 (1081)
T KOG1538|consen 122 EQ--KSVSKHK-SSSRIICCSWTNDGQ-YLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILA 197 (1081)
T ss_pred hh--hhHHhhh-hheeEEEeeecCCCc-EEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEE
Confidence 75 2222222 346788999999977 55589999999998765444443322 3466788988753 455
Q ss_pred EEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEeecCCCceEEEEEe
Q 002519 775 AAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFH 853 (913)
Q Consensus 775 ~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~s 853 (913)
+.....++.+|.+.. +.+..-+.-.-.-.|+.+.++|++++.|+.| .+++|... | ..+.++...+.+|+++..+
T Consensus 198 V~DW~qTLSFy~LsG-~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~-G---vrLGTvg~~D~WIWtV~~~ 272 (1081)
T KOG1538|consen 198 VADWGQTLSFYQLSG-KQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTRD-G---VRLGTVGEQDSWIWTVQAK 272 (1081)
T ss_pred EEeccceeEEEEecc-eeecccccCCCCchhheeccCCcEEEEccCCCceEEEeec-C---eEEeeccccceeEEEEEEc
Confidence 555566676666543 2222222222345688999999999999988 88888643 2 4555555568899999999
Q ss_pred CCCCEEEEEEcCCeEEEEECC
Q 002519 854 PTYPSLLVIGCYQSLELWNMS 874 (913)
Q Consensus 854 p~g~~l~s~s~dg~I~iwd~~ 874 (913)
|++.++++|+.||+|..|++-
T Consensus 273 PNsQ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 273 PNSQYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred cCCceEEEEEccCeeehhhhH
Confidence 999999999999999999874
No 188
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.69 E-value=1.8e-15 Score=173.90 Aligned_cols=244 Identities=20% Similarity=0.297 Sum_probs=186.8
Q ss_pred CCCCEEEEEEec-CCCEEEEEeCCCcEEEEECCCCce--eeE----eccCCCCeEEEEECCCC--CEEEEEeCCCeEEEE
Q 002519 632 STSKVICCHFSS-DGKLLATGGHDKKAVLWHTDTLKS--KTN----LEEHSSLITDVRFSPSM--PRLATSSFDKTVRVW 702 (913)
Q Consensus 632 H~~~V~~l~fsp-dg~~Lasgs~Dg~V~vwd~~~~~~--~~~----l~~h~~~V~~l~fspdg--~~Lasgs~Dg~V~Iw 702 (913)
-...|+|++|+| +..+||.|+++|.|.+||+..+.. ... ...|..+|+.+.|..+. ..|+++|.||.|..|
T Consensus 241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W 320 (555)
T KOG1587|consen 241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW 320 (555)
T ss_pred cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence 456899999999 567889999999999999986654 222 33689999999997654 459999999999999
Q ss_pred EcCCCCceeE-----Eec------cCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeee-----------EEeeCC
Q 002519 703 DADNPGYSLR-----TFM------GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT-----------RVFKGG 760 (913)
Q Consensus 703 dl~~~~~~~~-----~~~------~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~-----------~~~~~~ 760 (913)
+++.-..+.. ... .....+++++|.+.....|+.|+++|.|..-+....+.. ..+.+.
T Consensus 321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~ 400 (555)
T KOG1587|consen 321 DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGP 400 (555)
T ss_pred eccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcc
Confidence 9875322111 111 233568899999988888889999999987433322111 112345
Q ss_pred ceEEEEecCCCEEEEEEcCCeEEEEECC-CCeEEEEecCCCCCeEEEEEcCCCC-EEEEEeCC-eEEEEECCCCCCCceE
Q 002519 761 TAQMRFQPHLGRYLAAAAENVVSILDAE-TQACRLSLQGHTKPIDSVCWDPSGE-LLASVSED-SVRVWTVGSGSEGECV 837 (913)
Q Consensus 761 ~~~v~~s~~~~~ll~~~~dg~I~i~D~~-t~~~~~~l~~h~~~V~sl~~spdg~-~l~s~s~d-~I~vwdl~~~~~~~~i 837 (913)
+..+.++|-...++.++.|.+|+||... ...++..+..+...|++++|||... .|+++..+ .|.|||+..... ..+
T Consensus 401 v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~-~Pv 479 (555)
T KOG1587|consen 401 VYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDE-EPV 479 (555)
T ss_pred eEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhcccc-CCc
Confidence 6778899999888888889999999988 6788888888888999999999876 66666666 999999976533 344
Q ss_pred EEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCC
Q 002519 838 HELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSEN 876 (913)
Q Consensus 838 ~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~ 876 (913)
...+.+......+.|++.|+.|++|...|.|++|++...
T Consensus 480 ~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 480 LSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSES 518 (555)
T ss_pred ccccccccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence 444444666777888999999999999999999999643
No 189
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.68 E-value=3e-14 Score=148.94 Aligned_cols=231 Identities=17% Similarity=0.290 Sum_probs=171.7
Q ss_pred CCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCC--CeEEEEEcCCCCce
Q 002519 633 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFD--KTVRVWDADNPGYS 710 (913)
Q Consensus 633 ~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D--g~V~Iwdl~~~~~~ 710 (913)
...|..+.|+.|...|..|+.|| .++|..+..............|.-.-|+.. +||..+.+ +.+++++++. +..
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFSSS--LvaiV~~~qpr~Lkv~~~Kk-~~~ 80 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFSSS--LVAIVSIKQPRKLKVVHFKK-KTT 80 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeecccc--eeEEEecCCCceEEEEEccc-Cce
Confidence 44677788999999999999887 678887765543333333445666666644 66655554 4589999886 434
Q ss_pred eEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeCC----ceEEEEecCC--CEEEEEEc--CCeE
Q 002519 711 LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG----TAQMRFQPHL--GRYLAAAA--ENVV 782 (913)
Q Consensus 711 ~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~----~~~v~~s~~~--~~ll~~~~--dg~I 782 (913)
+..+. ....|.++.++.+ +++ ++-. ..|+|||+++-+.+.++..- ...+++++.. .+++.-+. .|.|
T Consensus 81 ICe~~-fpt~IL~VrmNr~--RLv-V~Le-e~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV 155 (391)
T KOG2110|consen 81 ICEIF-FPTSILAVRMNRK--RLV-VCLE-ESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDV 155 (391)
T ss_pred EEEEe-cCCceEEEEEccc--eEE-EEEc-ccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceE
Confidence 44333 5677999999743 344 5543 44999999999988877542 2234455544 45555433 6899
Q ss_pred EEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC--eEEEEECCCCCCCceEEEeecC--CCceEEEEEeCCCCE
Q 002519 783 SILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSGSEGECVHELSCN--GNKFHSCVFHPTYPS 858 (913)
Q Consensus 783 ~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d--~I~vwdl~~~~~~~~i~~~~~~--~~~i~~l~~sp~g~~ 858 (913)
.+||+.+.+.+..+..|++.+-+++|+++|.+||++++. .||||.+.++ ..+.++.-. ...|.+++|++++.+
T Consensus 156 ~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G---~kl~eFRRG~~~~~IySL~Fs~ds~~ 232 (391)
T KOG2110|consen 156 VLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEG---QKLYEFRRGTYPVSIYSLSFSPDSQF 232 (391)
T ss_pred EEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCc---cEeeeeeCCceeeEEEEEEECCCCCe
Confidence 999999999999999999999999999999999999998 7999999877 555555432 345889999999999
Q ss_pred EEEEEcCCeEEEEECCC
Q 002519 859 LLVIGCYQSLELWNMSE 875 (913)
Q Consensus 859 l~s~s~dg~I~iwd~~~ 875 (913)
|.+.+..++|+||.++.
T Consensus 233 L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 233 LAASSNTETVHIFKLEK 249 (391)
T ss_pred EEEecCCCeEEEEEecc
Confidence 99999999999998864
No 190
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.68 E-value=2.5e-16 Score=170.39 Aligned_cols=235 Identities=20% Similarity=0.279 Sum_probs=167.6
Q ss_pred ceeeeEeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEe-ccCCCCeEEEEECCC--CCEEEEEeCCCeE
Q 002519 623 FKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNL-EEHSSLITDVRFSPS--MPRLATSSFDKTV 699 (913)
Q Consensus 623 ~~~~~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l-~~h~~~V~~l~fspd--g~~Lasgs~Dg~V 699 (913)
+.....+.||++.|.|++|+.||.+|++|+.|-.+.|||.-..+.+..+ .+|...|.+++|-|. ++.|++|..|..|
T Consensus 40 L~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i 119 (758)
T KOG1310|consen 40 LDLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLI 119 (758)
T ss_pred cchhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceE
Confidence 4455678999999999999999999999999999999999877777766 489999999999884 5689999999999
Q ss_pred EEEEcCC---------CCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeE-Ee------------
Q 002519 700 RVWDADN---------PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR-VF------------ 757 (913)
Q Consensus 700 ~Iwdl~~---------~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~-~~------------ 757 (913)
+++|+.. ....++.+..|...|..|+..|++.+.|.++++||+|+-||++...... ..
T Consensus 120 ~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~ 199 (758)
T KOG1310|consen 120 KLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQ 199 (758)
T ss_pred EEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchh
Confidence 9999985 1234566778999999999999998999999999999999998743211 11
Q ss_pred eCCceEEEEecCCCE-EEEEEcCCeEEEEECCCCeEEEEecC---C----CCCeEEEE-EcCCCCEEEEEeCCeEEEEEC
Q 002519 758 KGGTAQMRFQPHLGR-YLAAAAENVVSILDAETQACRLSLQG---H----TKPIDSVC-WDPSGELLASVSEDSVRVWTV 828 (913)
Q Consensus 758 ~~~~~~v~~s~~~~~-ll~~~~dg~I~i~D~~t~~~~~~l~~---h----~~~V~sl~-~spdg~~l~s~s~d~I~vwdl 828 (913)
.....++.++|...+ +++|+.|-..++||.+...+ .+.. + .....|+. |+|.+- ...+
T Consensus 200 lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lk--s~~s~~~~~~~pp~~~~cv~yf~p~hl----kn~~------- 266 (758)
T KOG1310|consen 200 LIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLK--SFRSDGTMNTCPPKDCRCVRYFSPGHL----KNSQ------- 266 (758)
T ss_pred hheeeeeeecCCCCceEEecCCCchhhhhhhhhhcc--CCCCCccccCCCCcccchhheecCccc----cCcc-------
Confidence 123456788887754 55667788999999643211 1111 0 01111111 222110 0000
Q ss_pred CCCCCCceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE
Q 002519 829 GSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM 879 (913)
Q Consensus 829 ~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~ 879 (913)
+ .... ....++-+.|+|+|..|++.-....|++||+..++..
T Consensus 267 --g---n~~~----~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~ 308 (758)
T KOG1310|consen 267 --G---NLDR----YITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSP 308 (758)
T ss_pred --c---cccc----ceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCc
Confidence 0 0000 0112455678999988888888888999998877644
No 191
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.68 E-value=5.8e-15 Score=149.22 Aligned_cols=282 Identities=16% Similarity=0.258 Sum_probs=201.7
Q ss_pred eeeeEeecCCCCEEEEEEec---CCCEEEEEeC----CCcEEEEECC--CCceeeEe-ccCCCCeEEEEECCCCC-----
Q 002519 624 KEANSVRASTSKVICCHFSS---DGKLLATGGH----DKKAVLWHTD--TLKSKTNL-EEHSSLITDVRFSPSMP----- 688 (913)
Q Consensus 624 ~~~~~l~~H~~~V~~l~fsp---dg~~Lasgs~----Dg~V~vwd~~--~~~~~~~l-~~h~~~V~~l~fspdg~----- 688 (913)
+++..+..+ -.++++.|+. .+.+||.|+. .++|.|..++ +++.+..- ..|..+++.+.|.|+..
T Consensus 36 ~eiy~Y~ap-~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pd 114 (364)
T KOG0290|consen 36 KEIYTYNAP-WPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPD 114 (364)
T ss_pred ceEEEecCC-CceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcc
Confidence 334444433 3688888883 3458888873 4677776654 44433222 35889999999999863
Q ss_pred EEEEEeCCCeEEEEEcCCCCcee--------EEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCee--eE---
Q 002519 689 RLATSSFDKTVRVWDADNPGYSL--------RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC--TR--- 755 (913)
Q Consensus 689 ~Lasgs~Dg~V~Iwdl~~~~~~~--------~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~--~~--- 755 (913)
+|||++ ..+|+|.+......+ ..-..+..+++++.|+.-..++|.+++-|-++.|||++++.. ++
T Consensus 115 lLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQL 192 (364)
T KOG0290|consen 115 LLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQL 192 (364)
T ss_pred hhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEE
Confidence 455554 359999997422111 112246789999999998888999999999999999998732 22
Q ss_pred -EeeCCceEEEEecCC-CEEEEEEcCCeEEEEECCCCeEEEEe---cCCCCCeEEEEEcCC-CCEEEEEeCC--eEEEEE
Q 002519 756 -VFKGGTAQMRFQPHL-GRYLAAAAENVVSILDAETQACRLSL---QGHTKPIDSVCWDPS-GELLASVSED--SVRVWT 827 (913)
Q Consensus 756 -~~~~~~~~v~~s~~~-~~ll~~~~dg~I~i~D~~t~~~~~~l---~~h~~~V~sl~~spd-g~~l~s~s~d--~I~vwd 827 (913)
.+...+..++|...+ +.|++++.||.|++||++..+--..+ .....+...++|++. -+++++-..| .|.|.|
T Consensus 193 IAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLD 272 (364)
T KOG0290|consen 193 IAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILD 272 (364)
T ss_pred EecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEE
Confidence 123467789998865 45677788999999999987433332 223567888999984 4588888887 899999
Q ss_pred CCCCCCCceEEEeecCCCceEEEEEeCCC-CEEEEEEcCCeEEEEECCCCcE------EEEcccCCCeEEEEEeC-CCCE
Q 002519 828 VGSGSEGECVHELSCNGNKFHSCVFHPTY-PSLLVIGCYQSLELWNMSENKT------MTLTAHEGLIAALAVST-ETGY 899 (913)
Q Consensus 828 l~~~~~~~~i~~~~~~~~~i~~l~~sp~g-~~l~s~s~dg~I~iwd~~~~~~------~~~~~h~~~V~~l~~sp-dg~~ 899 (913)
++.. ...+..+..|...|+.++|.|.. .+|++++.|..+.|||+..-.. +....-.+.|+.+.|++ ...+
T Consensus 273 iR~P--~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~Dw 350 (364)
T KOG0290|consen 273 IRVP--CTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSSQPDW 350 (364)
T ss_pred ecCC--CcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhhccceeeeeeecccCCCE
Confidence 9865 36778899999999999999954 6788888999999999975332 22234678899999996 4456
Q ss_pred EEEEeCCCcEEE
Q 002519 900 VASASHDKFVKL 911 (913)
Q Consensus 900 Lasgs~DG~I~I 911 (913)
|+.+. ++++.|
T Consensus 351 iai~~-~kklei 361 (364)
T KOG0290|consen 351 IAICF-GKKLEI 361 (364)
T ss_pred EEEEe-cCeeeE
Confidence 76665 444443
No 192
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.68 E-value=6.8e-15 Score=150.86 Aligned_cols=225 Identities=16% Similarity=0.261 Sum_probs=173.9
Q ss_pred EeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCC---CceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEc
Q 002519 628 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT---LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDA 704 (913)
Q Consensus 628 ~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~---~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl 704 (913)
.++.-..+|+|.+|++|+..+|++.....|.||.... .+..+++..|...|++|+|+|..+.|++|+.|..-+||..
T Consensus 5 ~~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~ 84 (361)
T KOG1523|consen 5 VFHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQ 84 (361)
T ss_pred EeeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCcccccc
Confidence 3444567899999999999999999999999998763 5678899999999999999999999999999999999999
Q ss_pred CCCC--ceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCee-------eEEeeCCceEEEEecCCCEEEE
Q 002519 705 DNPG--YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC-------TRVFKGGTAQMRFQPHLGRYLA 775 (913)
Q Consensus 705 ~~~~--~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~-------~~~~~~~~~~v~~s~~~~~ll~ 775 (913)
..++ ++...+..++..+++|.|+|.++ .|++|+....|.||-++...- .+.++..+.++.|+|++-.+++
T Consensus 85 ~~~~~WkptlvLlRiNrAAt~V~WsP~en-kFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaa 163 (361)
T KOG1523|consen 85 PSGGTWKPTLVLLRINRAATCVKWSPKEN-KFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAA 163 (361)
T ss_pred CCCCeeccceeEEEeccceeeEeecCcCc-eEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecc
Confidence 5433 34556667899999999999865 667999999999988875432 2334556788999999999999
Q ss_pred EEcCCeEEEEEC-----CC-------------CeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCce
Q 002519 776 AAAENVVSILDA-----ET-------------QACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGEC 836 (913)
Q Consensus 776 ~~~dg~I~i~D~-----~t-------------~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~ 836 (913)
++.|+..+||.. ++ |..+.++....+.|..+.|+|+|..|+-.+.| .+.+-|.....+ .
T Consensus 164 Gs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~--~ 241 (361)
T KOG1523|consen 164 GSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSE--R 241 (361)
T ss_pred cccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCch--h
Confidence 999999888843 21 12233333456789999999999999999999 898888765431 2
Q ss_pred EEEeecCCCceEEEEEeCC
Q 002519 837 VHELSCNGNKFHSCVFHPT 855 (913)
Q Consensus 837 i~~~~~~~~~i~~l~~sp~ 855 (913)
+..+....-+..++.|-.+
T Consensus 242 v~~~~~~~lP~ls~~~ise 260 (361)
T KOG1523|consen 242 VQSVATAQLPLLSVSWISE 260 (361)
T ss_pred ccchhhccCCceeeEeecC
Confidence 2222222345555555443
No 193
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=8.5e-15 Score=152.62 Aligned_cols=242 Identities=15% Similarity=0.195 Sum_probs=189.0
Q ss_pred cCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEecc--CCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCC
Q 002519 631 ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE--HSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG 708 (913)
Q Consensus 631 ~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~--h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~ 708 (913)
.|...|.|++|....++|++|+.+++|.+.|+++.+.+..+.. ..+.|+.+..+|..+.|++.+.+|.|.+||++...
T Consensus 103 ~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~ 182 (609)
T KOG4227|consen 103 PHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQ 182 (609)
T ss_pred ccccceEEEEEccCCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCC
Confidence 4668999999999999999999999999999999887777653 23589999999999999999999999999998633
Q ss_pred ce--eEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeee-E------EeeC---CceEEEEecCCCEEEEE
Q 002519 709 YS--LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT-R------VFKG---GTAQMRFQPHLGRYLAA 776 (913)
Q Consensus 709 ~~--~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~-~------~~~~---~~~~v~~s~~~~~ll~~ 776 (913)
.. ............++.|+|....||++.+..+.+-+||++..... . .+.. .-..+.|++.|..+++.
T Consensus 183 ~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msi 262 (609)
T KOG4227|consen 183 NPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSI 262 (609)
T ss_pred CCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhh
Confidence 22 22333455667889999999999999999999999999865321 1 1111 12457899999999988
Q ss_pred EcCCeEEEEECCCCeEEEEecCCC-------CCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCC---------------
Q 002519 777 AAENVVSILDAETQACRLSLQGHT-------KPIDSVCWDPSGELLASVSED-SVRVWTVGSGSE--------------- 833 (913)
Q Consensus 777 ~~dg~I~i~D~~t~~~~~~l~~h~-------~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~--------------- 833 (913)
-....-.+||+.+.++...-..|. ..+.++||..|.. +++|+++ .|++|.+.....
T Consensus 263 RR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~ 341 (609)
T KOG4227|consen 263 RRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDYT-VATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMP 341 (609)
T ss_pred hccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeeccee-eeccCcccceEEEecCCCccccCccccCcchhhCc
Confidence 777777888988755433222232 3477888886654 8899999 999999853210
Q ss_pred -----CceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 002519 834 -----GECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNM 873 (913)
Q Consensus 834 -----~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~ 873 (913)
...+..+++|...+..+.|++...+|++.+-.+.++||.-
T Consensus 342 ~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~ 386 (609)
T KOG4227|consen 342 SEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSD 386 (609)
T ss_pred hhheecceeEEEecccccccceeecCCcceEeccchhhheecccc
Confidence 1234567889999999999999999999999999999964
No 194
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.67 E-value=7.7e-15 Score=169.31 Aligned_cols=230 Identities=17% Similarity=0.191 Sum_probs=162.9
Q ss_pred CCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCC---CeEEEEEcCCCCc-eeEEeccCCCCeEEEEEcCC
Q 002519 654 DKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFD---KTVRVWDADNPGY-SLRTFMGHSASVMSLDFHPN 729 (913)
Q Consensus 654 Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D---g~V~Iwdl~~~~~-~~~~~~~h~~~V~sl~fsp~ 729 (913)
+..|+|||.+... ...+..|...|.+++|+|||+.|++++.+ ..|++||+.++.. .+..+.+| ..+++|+||
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPD 258 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSPD 258 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECCC
Confidence 4689999987554 56677888899999999999999988754 3699999987332 23333333 446899999
Q ss_pred CCeEEEEEeCCCcEEEE--EcCCCeeeEEee--CCceEEEEecCCCEEEEEEc-CCeEEEEECCC--CeEEEEecCCCCC
Q 002519 730 KDDLICSCDGDGEIRYW--SINNGSCTRVFK--GGTAQMRFQPHLGRYLAAAA-ENVVSILDAET--QACRLSLQGHTKP 802 (913)
Q Consensus 730 ~~~ll~sgs~Dg~I~iw--dl~~~~~~~~~~--~~~~~v~~s~~~~~ll~~~~-dg~I~i~D~~t--~~~~~~l~~h~~~ 802 (913)
|+.++++.+.+|.+.|| |+.++....... .......|+|++..+++++. ++.+.||++.. +.. ..+ .+..
T Consensus 259 G~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~-~~l-~~~~- 335 (429)
T PRK01742 259 GSRLAFASSKDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGA-SLV-GGRG- 335 (429)
T ss_pred CCEEEEEEecCCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCe-EEe-cCCC-
Confidence 99888777778876555 666665443322 23457899999998777664 67777776543 322 222 3333
Q ss_pred eEEEEEcCCCCEEEEEeCCeEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEC---CCCcEE
Q 002519 803 IDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNM---SENKTM 879 (913)
Q Consensus 803 V~sl~~spdg~~l~s~s~d~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~---~~~~~~ 879 (913)
.++.|+|||++|+..+.+.+.+||+.++... . +.. ......+.|+|+|++|++++.++.+.+|++ ......
T Consensus 336 -~~~~~SpDG~~ia~~~~~~i~~~Dl~~g~~~-~---lt~-~~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~ 409 (429)
T PRK01742 336 -YSAQISADGKTLVMINGDNVVKQDLTSGSTE-V---LSS-TFLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKA 409 (429)
T ss_pred -CCccCCCCCCEEEEEcCCCEEEEECCCCCeE-E---ecC-CCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceE
Confidence 4678999999998888787777999876321 1 111 112356789999999999999987776654 344445
Q ss_pred EEcccCCCeEEEEEeCC
Q 002519 880 TLTAHEGLIAALAVSTE 896 (913)
Q Consensus 880 ~~~~h~~~V~~l~~spd 896 (913)
.+..|.+.+..++|+|-
T Consensus 410 ~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 410 RLPGSDGQVKFPAWSPY 426 (429)
T ss_pred EccCCCCCCCCcccCCC
Confidence 77788889999999984
No 195
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.66 E-value=6.6e-15 Score=148.63 Aligned_cols=207 Identities=24% Similarity=0.412 Sum_probs=159.6
Q ss_pred ccceeeeEee-cCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCce-eeEec-----cCCCCeEEEEECC--CCCEEE
Q 002519 621 FSFKEANSVR-ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKS-KTNLE-----EHSSLITDVRFSP--SMPRLA 691 (913)
Q Consensus 621 ~~~~~~~~l~-~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~-~~~l~-----~h~~~V~~l~fsp--dg~~La 691 (913)
.+++.+..+. .+-+.|.||.|.|++..||+-. |..|.+|+++.... +..+. +|....++-+|+| +++.++
T Consensus 110 ~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~ 188 (370)
T KOG1007|consen 110 STLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVA 188 (370)
T ss_pred chhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEE
Confidence 3566777776 6778999999999999998876 88999999987655 33332 3566788889998 677777
Q ss_pred EEeCCCeEEEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCe-eeEEeeCC---ceEEEEe
Q 002519 692 TSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS-CTRVFKGG---TAQMRFQ 767 (913)
Q Consensus 692 sgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~-~~~~~~~~---~~~v~~s 767 (913)
+.+ |++++.||+++..+....-..|...|.++.|+|+..++|++|++||.|+|||.+.-+ .+..+.++ +.+++|+
T Consensus 189 tt~-d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn 267 (370)
T KOG1007|consen 189 TTS-DSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFN 267 (370)
T ss_pred EeC-CCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEec
Confidence 765 889999999985555556667889999999999999999999999999999998654 45555554 4678998
Q ss_pred cCCC-EEEEEEcCCeEEEEECCC-----------------------------CeEEEEecCCCCCeEEEEEcCCCC-EEE
Q 002519 768 PHLG-RYLAAAAENVVSILDAET-----------------------------QACRLSLQGHTKPIDSVCWDPSGE-LLA 816 (913)
Q Consensus 768 ~~~~-~ll~~~~dg~I~i~D~~t-----------------------------~~~~~~l~~h~~~V~sl~~spdg~-~l~ 816 (913)
|... .+++++.|..|.+|.... ...+.++..|++.|++++|+.-.. +|+
T Consensus 268 ~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFA 347 (370)
T KOG1007|consen 268 PEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFA 347 (370)
T ss_pred CccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEE
Confidence 8765 556677788888885321 012335677999999999998766 677
Q ss_pred EEeCC-eEEEEECC
Q 002519 817 SVSED-SVRVWTVG 829 (913)
Q Consensus 817 s~s~d-~I~vwdl~ 829 (913)
+-+.| .+.|=.+.
T Consensus 348 SLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 348 SLSYDGRVIISSVP 361 (370)
T ss_pred EeccCceEEeecCC
Confidence 78888 77776653
No 196
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.65 E-value=4.5e-14 Score=147.62 Aligned_cols=228 Identities=13% Similarity=0.163 Sum_probs=171.0
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCC--CcEEEEEcCCCe
Q 002519 675 SSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD--GEIRYWSINNGS 752 (913)
Q Consensus 675 ~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~D--g~I~iwdl~~~~ 752 (913)
...|..+.|+.+...|..|+.|| .++|..+.-+++ .........|..+-|+.. |++..+.+ ..+++++++.+.
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~-~~~~~~~~~IvEmLFSSS---LvaiV~~~qpr~Lkv~~~Kk~~ 79 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKC-FSKDTEGVSIVEMLFSSS---LVAIVSIKQPRKLKVVHFKKKT 79 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHh-hcccCCCeEEEEeecccc---eeEEEecCCCceEEEEEcccCc
Confidence 34577788999999999999999 678888763332 222223445666777743 55555444 458999998887
Q ss_pred eeEEee--CCceEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCC---CCCeEEEEEcCCCCEEEEEeC-C--eEE
Q 002519 753 CTRVFK--GGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGH---TKPIDSVCWDPSGELLASVSE-D--SVR 824 (913)
Q Consensus 753 ~~~~~~--~~~~~v~~s~~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h---~~~V~sl~~spdg~~l~s~s~-d--~I~ 824 (913)
.+..+. ..+.++++. .++++++-.+. |+|||+++.+.++++..- ...+..+.+++.+.+++.-+. + .|.
T Consensus 80 ~ICe~~fpt~IL~VrmN--r~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~ 156 (391)
T KOG2110|consen 80 TICEIFFPTSILAVRMN--RKRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVV 156 (391)
T ss_pred eEEEEecCCceEEEEEc--cceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEE
Confidence 666544 444455554 35666655544 999999999999988753 344666666666668876543 2 899
Q ss_pred EEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEEEEcCC-eEEEEECCCCcEE-EEcc--cCCCeEEEEEeCCCCEE
Q 002519 825 VWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ-SLELWNMSENKTM-TLTA--HEGLIAALAVSTETGYV 900 (913)
Q Consensus 825 vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg-~I~iwd~~~~~~~-~~~~--h~~~V~~l~~spdg~~L 900 (913)
|||+.+- ..+..+..|.+.+-+++|+++|.+|++++..| .|+||.+.++..+ .+.. ....|.+++|++++.+|
T Consensus 157 l~d~~nl---~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L 233 (391)
T KOG2110|consen 157 LFDTINL---QPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFL 233 (391)
T ss_pred EEEcccc---eeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeE
Confidence 9999765 77888889999999999999999999999999 6899999999877 3432 24568999999999999
Q ss_pred EEEeCCCcEEEeC
Q 002519 901 ASASHDKFVKLWK 913 (913)
Q Consensus 901 asgs~DG~I~IWd 913 (913)
++.|..++|+||+
T Consensus 234 ~~sS~TeTVHiFK 246 (391)
T KOG2110|consen 234 AASSNTETVHIFK 246 (391)
T ss_pred EEecCCCeEEEEE
Confidence 9999999999996
No 197
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.65 E-value=4.4e-16 Score=166.15 Aligned_cols=262 Identities=18% Similarity=0.282 Sum_probs=209.7
Q ss_pred CEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCceeEEe
Q 002519 635 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTF 714 (913)
Q Consensus 635 ~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~ 714 (913)
.-+.+.|+.+|+.|+.|+..|.|..+|+.+++....+.. ...|.++.|-.+..+||++- ...++|||-. +..+..+
T Consensus 131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v-~Etv~Dv~~LHneq~~AVAQ-K~y~yvYD~~--GtElHCl 206 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV-METVRDVTFLHNEQFFAVAQ-KKYVYVYDNN--GTELHCL 206 (545)
T ss_pred CCeeeeecCCccEEEecCCccceeeeecccceeeeeeeh-hhhhhhhhhhcchHHHHhhh-hceEEEecCC--CcEEeeh
Confidence 467789999999999999999999999999998888764 45699999998888887775 5679999876 5667777
Q ss_pred ccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEee---CCceEEEEecCCCEEEEEEcCCeEEEEECCCCe
Q 002519 715 MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQMRFQPHLGRYLAAAAENVVSILDAETQA 791 (913)
Q Consensus 715 ~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~---~~~~~v~~s~~~~~ll~~~~dg~I~i~D~~t~~ 791 (913)
+.| ..|..+.|.|. .+||++++..|.++.-|+.+|+.+..+. +.+..++-.|.+..+-+|...|+|.+|.....+
T Consensus 207 k~~-~~v~rLeFLPy-HfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~ske 284 (545)
T KOG1272|consen 207 KRH-IRVARLEFLPY-HFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKE 284 (545)
T ss_pred hhc-Cchhhhcccch-hheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcc
Confidence 755 45888999997 5688899999999999999999887765 345667788888888889999999999999999
Q ss_pred EEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEE
Q 002519 792 CRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLEL 870 (913)
Q Consensus 792 ~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~i 870 (913)
++..+.+|.++|.+|++.++|.|+++.+.| .++|||++... .+..+.. ......++||..| +++++....|.|
T Consensus 285 PLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~---ql~t~~t-p~~a~~ls~Sqkg--lLA~~~G~~v~i 358 (545)
T KOG1272|consen 285 PLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFY---QLHTYRT-PHPASNLSLSQKG--LLALSYGDHVQI 358 (545)
T ss_pred hHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeecccc---ccceeec-CCCcccccccccc--ceeeecCCeeee
Confidence 999999999999999999999999999999 99999998764 3333333 4556677787665 666677778999
Q ss_pred EE-CCCC---cEEEEc--ccCCCeEEEEEeCCCCEEEEEeCCCc
Q 002519 871 WN-MSEN---KTMTLT--AHEGLIAALAVSTETGYVASASHDKF 908 (913)
Q Consensus 871 wd-~~~~---~~~~~~--~h~~~V~~l~~spdg~~Lasgs~DG~ 908 (913)
|. ...+ ....+. ...+.|..+.|.|-..+|..|-..|.
T Consensus 359 w~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~ 402 (545)
T KOG1272|consen 359 WKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGI 402 (545)
T ss_pred ehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCc
Confidence 94 3221 111222 23458999999998777776655543
No 198
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.64 E-value=2.9e-13 Score=151.70 Aligned_cols=263 Identities=12% Similarity=0.115 Sum_probs=175.2
Q ss_pred EEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCceeEEeccCCCCeEEEEEc
Q 002519 648 LATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFH 727 (913)
Q Consensus 648 Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fs 727 (913)
+++-..++.|.|.|..+.+.+.++......-..+.|++|++++++++.||.|.++|+.+ .+.+.++... ....+++++
T Consensus 9 ~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~-~~~v~~i~~G-~~~~~i~~s 86 (369)
T PF02239_consen 9 YVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLAT-GKVVATIKVG-GNPRGIAVS 86 (369)
T ss_dssp EEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTS-SSEEEEEE-S-SEEEEEEE-
T ss_pred EEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCc-ccEEEEEecC-CCcceEEEc
Confidence 34555789999999999999999987655555688999999999999999999999998 6677777643 446789999
Q ss_pred CCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeCC----------ceEEEEecCCCEEEEEEcC-CeEEEEECCCCeEEE-E
Q 002519 728 PNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG----------TAQMRFQPHLGRYLAAAAE-NVVSILDAETQACRL-S 795 (913)
Q Consensus 728 p~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~----------~~~v~~s~~~~~ll~~~~d-g~I~i~D~~t~~~~~-~ 795 (913)
+||+++++++..++.|.++|.++.+.++.+... ...+..++....+++.-.| +.|.+.|....+.+. .
T Consensus 87 ~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~ 166 (369)
T PF02239_consen 87 PDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVT 166 (369)
T ss_dssp -TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEE
T ss_pred CCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecccccccee
Confidence 999999988889999999999999988876532 2345667777777777665 789999987654332 2
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEeCC--eEEEEECCCCCC----------------------------------------
Q 002519 796 LQGHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSGSE---------------------------------------- 833 (913)
Q Consensus 796 l~~h~~~V~sl~~spdg~~l~s~s~d--~I~vwdl~~~~~---------------------------------------- 833 (913)
............|+|+++|++++... .|-++|..++..
T Consensus 167 ~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~i 246 (369)
T PF02239_consen 167 TIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLI 246 (369)
T ss_dssp EEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEE
T ss_pred eecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccc
Confidence 33345667889999999988776433 777777654311
Q ss_pred ------------CceEEEeecCCCceEEEEEeCCCCEEEEE---E-cCCeEEEEECCCCcEEEEcc--cCCCeEEEEEeC
Q 002519 834 ------------GECVHELSCNGNKFHSCVFHPTYPSLLVI---G-CYQSLELWNMSENKTMTLTA--HEGLIAALAVST 895 (913)
Q Consensus 834 ------------~~~i~~~~~~~~~i~~l~~sp~g~~l~s~---s-~dg~I~iwd~~~~~~~~~~~--h~~~V~~l~~sp 895 (913)
.+.+..+...+.. .-+..||+++++++. + ..+.|.|+|..+.+...... ....+..+.|++
T Consensus 247 g~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~ 325 (369)
T PF02239_consen 247 GTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNP 325 (369)
T ss_dssp E--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-T
T ss_pred cCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECC
Confidence 1112222222222 445679999999998 3 34799999999997764332 223599999999
Q ss_pred CCCEEEEEeCC--CcEEEeC
Q 002519 896 ETGYVASASHD--KFVKLWK 913 (913)
Q Consensus 896 dg~~Lasgs~D--G~I~IWd 913 (913)
+|+++..+..| |.|.|||
T Consensus 326 dG~~v~vS~~~~~~~i~v~D 345 (369)
T PF02239_consen 326 DGKEVWVSVWDGNGAIVVYD 345 (369)
T ss_dssp TSSEEEEEEE--TTEEEEEE
T ss_pred CCCEEEEEEecCCCEEEEEE
Confidence 99976655543 3699886
No 199
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.64 E-value=1.1e-14 Score=167.87 Aligned_cols=223 Identities=15% Similarity=0.191 Sum_probs=158.7
Q ss_pred eeEeecCCCCEEEEEEecCCCEEEEEeCC---CcEEEEECCCCce--eeEeccCCCCeEEEEECCCCCEEEEEe-CCCeE
Q 002519 626 ANSVRASTSKVICCHFSSDGKLLATGGHD---KKAVLWHTDTLKS--KTNLEEHSSLITDVRFSPSMPRLATSS-FDKTV 699 (913)
Q Consensus 626 ~~~l~~H~~~V~~l~fspdg~~Lasgs~D---g~V~vwd~~~~~~--~~~l~~h~~~V~~l~fspdg~~Lasgs-~Dg~V 699 (913)
...+..|...|.+++|||||+.||.++.+ ..|++||+.+++. +..+.+| ..+++|+|||+.|++++ .+|.+
T Consensus 196 ~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPDG~~La~~~~~~g~~ 272 (429)
T PRK01742 196 QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSPDGSRLAFASSKDGVL 272 (429)
T ss_pred ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECCCCCEEEEEEecCCcE
Confidence 34566788899999999999999988754 3699999988753 3333333 45789999999888765 58876
Q ss_pred EEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCe-eeEEeeCCceEEEEecCCCEEEEEEc
Q 002519 700 RVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS-CTRVFKGGTAQMRFQPHLGRYLAAAA 778 (913)
Q Consensus 700 ~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~-~~~~~~~~~~~v~~s~~~~~ll~~~~ 778 (913)
.||.++..+.....+..+...+.++.|+||++.+++++..+|.+.||++.... ....+........|+|++..+++++.
T Consensus 273 ~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~~~~~~~SpDG~~ia~~~~ 352 (429)
T PRK01742 273 NIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGGRGYSAQISADGKTLVMING 352 (429)
T ss_pred EEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecCCCCCccCCCCCCEEEEEcC
Confidence 66644322334556666777888999999999888777778888888875422 22222221145679999999888777
Q ss_pred CCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEeecCCCceEEEEEeCC
Q 002519 779 ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPT 855 (913)
Q Consensus 779 dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~ 855 (913)
++ +.+||+.+++.......+ ...++.|+|+|++|++++.+ .+.+|++... ....+..+..+...+..++|+|-
T Consensus 353 ~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~-~G~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 353 DN-VVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQLVSA-DGRFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred CC-EEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEEEEEC-CCCceEEccCCCCCCCCcccCCC
Confidence 54 566999988755433222 34567899999999988877 7777765321 22566677777777888899885
No 200
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.64 E-value=2.2e-15 Score=165.09 Aligned_cols=231 Identities=20% Similarity=0.368 Sum_probs=162.7
Q ss_pred ecCCCEEEE--EeCCCcEEEEECCC-CceeeE-ec--cCCCCeEEEEECC-CCCEEEEEeCCCeEEEEEcCCCC------
Q 002519 642 SSDGKLLAT--GGHDKKAVLWHTDT-LKSKTN-LE--EHSSLITDVRFSP-SMPRLATSSFDKTVRVWDADNPG------ 708 (913)
Q Consensus 642 spdg~~Las--gs~Dg~V~vwd~~~-~~~~~~-l~--~h~~~V~~l~fsp-dg~~Lasgs~Dg~V~Iwdl~~~~------ 708 (913)
+.+.+++|+ .+..|.|.||++.. |+.... +. .....|+++.|.| |...|+++++||.|+||.+..++
T Consensus 588 can~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~ 667 (1012)
T KOG1445|consen 588 CANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEM 667 (1012)
T ss_pred eeccceEEEEecCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccC
Confidence 344556665 45678999999973 332211 11 2456799999998 56799999999999999998644
Q ss_pred ceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeCCceEEEEecCCCEEEEEEcCCeEEEEECC
Q 002519 709 YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAE 788 (913)
Q Consensus 709 ~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~s~~~~~ll~~~~dg~I~i~D~~ 788 (913)
.....++.|...|++|.|+|-...+|++++.|.+|++||+.+.+.
T Consensus 668 tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~----------------------------------- 712 (1012)
T KOG1445|consen 668 TPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKL----------------------------------- 712 (1012)
T ss_pred CcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhh-----------------------------------
Confidence 335677889999999999998777888888888888888876543
Q ss_pred CCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEeec-CCCceEEEEEeCCCCEEEEEEcCC
Q 002519 789 TQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSC-NGNKFHSCVFHPTYPSLLVIGCYQ 866 (913)
Q Consensus 789 t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~-~~~~i~~l~~sp~g~~l~s~s~dg 866 (913)
...+.+|.+.|.+++|+|+|+.+++.+.| +|+||.-++++. .+.+-++ .+..--.+.|.-+|+++++.+.|.
T Consensus 713 ----~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~--pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk 786 (1012)
T KOG1445|consen 713 ----YSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQ--PVYEGKGPVGTRGARILWACDGRIVIVVGFDK 786 (1012)
T ss_pred ----hheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCC--ccccCCCCccCcceeEEEEecCcEEEEecccc
Confidence 33566799999999999999999999999 999999987643 2332222 123345678888999999998875
Q ss_pred ----eEEEEECCCCcE--E-E-EcccCCCeEEEEEeCCCC-EEEEEeCCCcEEEeC
Q 002519 867 ----SLELWNMSENKT--M-T-LTAHEGLIAALAVSTETG-YVASASHDKFVKLWK 913 (913)
Q Consensus 867 ----~I~iwd~~~~~~--~-~-~~~h~~~V~~l~~spdg~-~Lasgs~DG~I~IWd 913 (913)
.|.+||..+-.. + + .....-.+.--.+.+|.. ++++|-.|..|++|+
T Consensus 787 ~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~yE 842 (1012)
T KOG1445|consen 787 SSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYE 842 (1012)
T ss_pred cchhhhhhhhhhhccCCcceeeeecccCccccccccCCCceEEEecCCCceEEEEE
Confidence 688888654331 1 1 111111111123345554 456676788888773
No 201
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.64 E-value=7.1e-14 Score=145.27 Aligned_cols=276 Identities=16% Similarity=0.264 Sum_probs=190.1
Q ss_pred CCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEecc-CCCCeEEEEECCCC-CEEEEEeCCCeEEEEEcCCCCce
Q 002519 633 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE-HSSLITDVRFSPSM-PRLATSSFDKTVRVWDADNPGYS 710 (913)
Q Consensus 633 ~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~-h~~~V~~l~fspdg-~~Lasgs~Dg~V~Iwdl~~~~~~ 710 (913)
+-.+..++|++.-..+|++..|-.|+|||-.. ++...++. -...|+|++|.|.+ +.|+.|+..| |.||..+.....
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~ 175 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNA 175 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCccccc
Confidence 34678899999777889999999999999776 55555553 34679999999975 4677777665 999988642211
Q ss_pred -------------eEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEe---eCCceEEEEecCCCEEE
Q 002519 711 -------------LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF---KGGTAQMRFQPHLGRYL 774 (913)
Q Consensus 711 -------------~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~---~~~~~~v~~s~~~~~ll 774 (913)
+....+| ..|+++.|.+||..++-+.-.|..|.|||..++.++... .++..-+.|+|++.+++
T Consensus 176 ~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lf 254 (445)
T KOG2139|consen 176 NRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLF 254 (445)
T ss_pred ccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEE
Confidence 2223345 789999999998877755556889999999999877654 24567899999999999
Q ss_pred EEEcCCeEEEE-ECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCC------------ceEEEee
Q 002519 775 AAAAENVVSIL-DAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEG------------ECVHELS 841 (913)
Q Consensus 775 ~~~~dg~I~i~-D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d~I~vwdl~~~~~~------------~~i~~~~ 841 (913)
++.-|+..++| ..++..+..-..+ .+.|...+|+|+|++|+..+.+.-++|.+....+. ..+..+.
T Consensus 255 aAt~davfrlw~e~q~wt~erw~lg-sgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~ 333 (445)
T KOG2139|consen 255 AATCDAVFRLWQENQSWTKERWILG-SGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQ 333 (445)
T ss_pred Eecccceeeeehhcccceecceecc-CCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeeccch
Confidence 99999999999 4444444433333 34899999999999777666664455554321110 0111110
Q ss_pred -----c----CCCceEEEEEeCCCCEEEEEEcCC--------eEEEEECCCCcEEEEc--c--cCCCeEEEEEeC---CC
Q 002519 842 -----C----NGNKFHSCVFHPTYPSLLVIGCYQ--------SLELWNMSENKTMTLT--A--HEGLIAALAVST---ET 897 (913)
Q Consensus 842 -----~----~~~~i~~l~~sp~g~~l~s~s~dg--------~I~iwd~~~~~~~~~~--~--h~~~V~~l~~sp---dg 897 (913)
. ..+.+.+++|.|.|.++++.-..+ .|.+||......+.+. + ....-..++|+| ++
T Consensus 334 e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g 413 (445)
T KOG2139|consen 334 EVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEG 413 (445)
T ss_pred hhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCC
Confidence 1 145688999999999999986543 4677887766555332 1 111234455554 45
Q ss_pred CEEEEEeCCCcEEEe
Q 002519 898 GYVASASHDKFVKLW 912 (913)
Q Consensus 898 ~~Lasgs~DG~I~IW 912 (913)
.+|..|=..|.|.-|
T Consensus 414 ~lLsiaWsTGriq~y 428 (445)
T KOG2139|consen 414 RLLSIAWSTGRIQRY 428 (445)
T ss_pred cEEEEEeccCceEee
Confidence 566666666766544
No 202
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.62 E-value=1.1e-13 Score=142.05 Aligned_cols=269 Identities=14% Similarity=0.217 Sum_probs=195.5
Q ss_pred CCEEEEEEecCCCEEEE-EeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCE-EEEEeCCCeEEEEEcCCCCcee
Q 002519 634 SKVICCHFSSDGKLLAT-GGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPR-LATSSFDKTVRVWDADNPGYSL 711 (913)
Q Consensus 634 ~~V~~l~fspdg~~Las-gs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~-Lasgs~Dg~V~Iwdl~~~~~~~ 711 (913)
+.|.-|.|..|..++++ ...|+.|.+|++...+-...+......+.+++|+|||+. |.+...|-.|.||.+.+.. .
T Consensus 49 dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~--~ 126 (447)
T KOG4497|consen 49 DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQK--G 126 (447)
T ss_pred HHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccce--e
Confidence 46777888888766555 456889999999988888888888899999999999965 5566679999999998733 2
Q ss_pred EEeccCCCCeEEEEEcCCCCeEEEEEe-----------------------------------CCCcEEEEEcCCCeeeEE
Q 002519 712 RTFMGHSASVMSLDFHPNKDDLICSCD-----------------------------------GDGEIRYWSINNGSCTRV 756 (913)
Q Consensus 712 ~~~~~h~~~V~sl~fsp~~~~ll~sgs-----------------------------------~Dg~I~iwdl~~~~~~~~ 756 (913)
..+.-.+..+..++|++||....+..- ++..+.+||.--.-.+..
T Consensus 127 ~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~a 206 (447)
T KOG4497|consen 127 YLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYA 206 (447)
T ss_pred EEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeee
Confidence 223333455677888888775432211 123344555332222222
Q ss_pred ee--CCceEEEEecCCCEEEEEEcCCeEEEEECCCCeEEE----------------------------------------
Q 002519 757 FK--GGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRL---------------------------------------- 794 (913)
Q Consensus 757 ~~--~~~~~v~~s~~~~~ll~~~~dg~I~i~D~~t~~~~~---------------------------------------- 794 (913)
++ .++..+.|+|.+..+++|+.|+.++|.+--+.+...
T Consensus 207 Ye~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a 286 (447)
T KOG4497|consen 207 YERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEA 286 (447)
T ss_pred eeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCcccc
Confidence 22 366788999999999999999988876533221111
Q ss_pred --------------------Eec------CCCCCeEEEEEcCCCCEEEEEeCC---eEEEEECCCCCCCceEEEeecCCC
Q 002519 795 --------------------SLQ------GHTKPIDSVCWDPSGELLASVSED---SVRVWTVGSGSEGECVHELSCNGN 845 (913)
Q Consensus 795 --------------------~l~------~h~~~V~sl~~spdg~~l~s~s~d---~I~vwdl~~~~~~~~i~~~~~~~~ 845 (913)
.++ ...-.+.-++|++|..++++-.+. .+-+||++..+ ++.+-....
T Consensus 287 ~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~----l~avLiQk~ 362 (447)
T KOG4497|consen 287 HIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLK----LHAVLIQKH 362 (447)
T ss_pred CccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhh----hhhhhhhcc
Confidence 000 011235568999999999998877 78999997642 233333467
Q ss_pred ceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEeCCCc
Q 002519 846 KFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKF 908 (913)
Q Consensus 846 ~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~DG~ 908 (913)
+|....|+|....++++.....+++|......++......-.|..+.|.-+|..++.++.|..
T Consensus 363 piraf~WdP~~prL~vctg~srLY~W~psg~~~V~vP~~GF~i~~l~W~~~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 363 PIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGVPKKGFNIQKLQWLQPGEFIVLCGKDAF 425 (447)
T ss_pred ceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEecCCCCceeeeEEecCCCcEEEEEcCCce
Confidence 899999999999999999999999999999888877777789999999999999999998853
No 203
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.62 E-value=1.4e-13 Score=158.12 Aligned_cols=278 Identities=23% Similarity=0.257 Sum_probs=199.0
Q ss_pred cCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCC---EEEEEeCCCeEEEEEcCCC
Q 002519 631 ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP---RLATSSFDKTVRVWDADNP 707 (913)
Q Consensus 631 ~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~---~Lasgs~Dg~V~Iwdl~~~ 707 (913)
+....-..-.||+|+++|+... +..|.||.+.++.+++.+++|..+++.+.+.|... ++++++.||+|++||...
T Consensus 14 g~n~~~~~avfSnD~k~l~~~~-~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~- 91 (792)
T KOG1963|consen 14 GRNGNKSPAVFSNDAKFLFLCT-GNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSD- 91 (792)
T ss_pred cccceecccccccCCcEEEEee-CCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCC-
Confidence 3333334456899999888775 56899999999999999999999999999987644 678999999999999987
Q ss_pred CceeEEeccCCCCeEEEEEcCC---CCeEEEEEeCCC------------cEEEEEcCCCeee-EEe-eCC--ceEEEEec
Q 002519 708 GYSLRTFMGHSASVMSLDFHPN---KDDLICSCDGDG------------EIRYWSINNGSCT-RVF-KGG--TAQMRFQP 768 (913)
Q Consensus 708 ~~~~~~~~~h~~~V~sl~fsp~---~~~ll~sgs~Dg------------~I~iwdl~~~~~~-~~~-~~~--~~~v~~s~ 768 (913)
+..++++..+ ..|..+.+.|. ..-.+..+..|. .++-+.+.+.... ..+ +.. ...+.+.+
T Consensus 92 ~~Llkt~~~~-~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~ 170 (792)
T KOG1963|consen 92 GELLKTFDNN-LPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNN 170 (792)
T ss_pred cEEEEEEecC-CceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcC
Confidence 6667766533 33444444221 111111222121 1111222111000 000 111 23455554
Q ss_pred CCCEEEEEEcCCeEEEEECCCCeEEEE----ecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCC-CCCCceEEEeec
Q 002519 769 HLGRYLAAAAENVVSILDAETQACRLS----LQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGS-GSEGECVHELSC 842 (913)
Q Consensus 769 ~~~~ll~~~~dg~I~i~D~~t~~~~~~----l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~-~~~~~~i~~~~~ 842 (913)
. +.+.....+..+.+|+..+...... -..|...+++.+++|++++++++..| .|.+|.--. .........+.-
T Consensus 171 ~-ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHW 249 (792)
T KOG1963|consen 171 S-GEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHW 249 (792)
T ss_pred C-ceEEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEe
Confidence 4 5555566677788888877541111 12366678999999999999999998 999996533 334455667778
Q ss_pred CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEe
Q 002519 843 NGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLW 912 (913)
Q Consensus 843 ~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~DG~I~IW 912 (913)
|...|.+++|+++|.+|++||..+.+.+|.+.+++...++.-.++|..+.++||+.+.+....|..|.+-
T Consensus 250 H~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li 319 (792)
T KOG1963|consen 250 HHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLI 319 (792)
T ss_pred cccccceeEEecCCceEeecccceEEEEEeecCCCcccccccCCeeEEEEEcCCCCeEEEEecCceEEEE
Confidence 8999999999999999999999999999999999977888899999999999999999999999998874
No 204
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.62 E-value=2.1e-14 Score=155.84 Aligned_cols=242 Identities=15% Similarity=0.190 Sum_probs=164.1
Q ss_pred CEEEEEEecCCCEEEEEeCCCcEEEEECCCCce----eeEeccCCCCeEEEEE-----CCCCCEEEEEeCCCeEEEEEcC
Q 002519 635 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKS----KTNLEEHSSLITDVRF-----SPSMPRLATSSFDKTVRVWDAD 705 (913)
Q Consensus 635 ~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~----~~~l~~h~~~V~~l~f-----spdg~~Lasgs~Dg~V~Iwdl~ 705 (913)
.++...++-.|++|+..- ...++||+...+.. +....-.....+|-+| .+++--|+.|-.-|.|.+.|..
T Consensus 125 ~~~~~~~~~~gd~lcFnv-g~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~ 203 (636)
T KOG2394|consen 125 IVTNTNQSGKGDRLCFNV-GRELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPI 203 (636)
T ss_pred ceeeccccCCCCEEEEec-CCeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecch
Confidence 455555666677776643 34688888763221 1111111223344445 3456678888888889998876
Q ss_pred CCCceeEEec----cCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeCCceEEE--EecCCCEEEEEEcC
Q 002519 706 NPGYSLRTFM----GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMR--FQPHLGRYLAAAAE 779 (913)
Q Consensus 706 ~~~~~~~~~~----~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~--~s~~~~~ll~~~~d 779 (913)
. ....+.+. -....|+||.|-|.++.+|+++-.+|.+++||.+. ........ ..+++..+......
T Consensus 204 ~-~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~-------~~~~t~p~~~~~k~~~~f~i~t~k 275 (636)
T KOG2394|consen 204 N-FEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEI-------VCGATAPSYQALKDGDQFAILTSK 275 (636)
T ss_pred h-hHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccc-------cccCCCCcccccCCCCeeEEeeee
Confidence 5 22222111 23478999999999999998999999999999721 11111111 22233333221110
Q ss_pred CeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCE
Q 002519 780 NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPS 858 (913)
Q Consensus 780 g~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~ 858 (913)
...+..++..+..-...|+.++|+|||++||+.+.| .+||||+.+. +.+..++..-+...||+|+|||++
T Consensus 276 ------sk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~---eLlg~mkSYFGGLLCvcWSPDGKy 346 (636)
T KOG2394|consen 276 ------SKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQ---ELLGVMKSYFGGLLCVCWSPDGKY 346 (636)
T ss_pred ------ccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHH---HHHHHHHhhccceEEEEEcCCccE
Confidence 111113344443345689999999999999999999 9999999765 455555555778999999999999
Q ss_pred EEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEe
Q 002519 859 LLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVS 894 (913)
Q Consensus 859 l~s~s~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~s 894 (913)
|++|+.|..|.||.+.+++++ .-.+|.++|..|+|+
T Consensus 347 IvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFD 383 (636)
T KOG2394|consen 347 IVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFD 383 (636)
T ss_pred EEecCCcceEEEEEeccceEEEeccccccceeeEeec
Confidence 999999999999999999998 567999999999998
No 205
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.62 E-value=7.8e-15 Score=155.97 Aligned_cols=191 Identities=23% Similarity=0.276 Sum_probs=152.5
Q ss_pred EEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCceeEEec-
Q 002519 637 ICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFM- 715 (913)
Q Consensus 637 ~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~- 715 (913)
.+++|+.+|..|++|+.||++|||++.....+.....|...|.++.|+||++.|++.+.| ..+||+++++ ..+....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g-~~~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTG-AALARKTP 225 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccC-chhhhcCC
Confidence 789999999999999999999999999888888889999999999999999999999999 8999999984 3333332
Q ss_pred -cCCCCeEEEEEcCCC---Ce-EEEEEeCCCcEEEEEcCCCee---eE---Ee--eCCceEEEEecCCCEEEEEEcCCeE
Q 002519 716 -GHSASVMSLDFHPNK---DD-LICSCDGDGEIRYWSINNGSC---TR---VF--KGGTAQMRFQPHLGRYLAAAAENVV 782 (913)
Q Consensus 716 -~h~~~V~sl~fsp~~---~~-ll~sgs~Dg~I~iwdl~~~~~---~~---~~--~~~~~~v~~s~~~~~ll~~~~dg~I 782 (913)
..+..+..+.|..++ .. +++....-+.|+.||+...+. .+ .. ...+++++++.+|+.+++++.||.|
T Consensus 226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsV 305 (398)
T KOG0771|consen 226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSV 305 (398)
T ss_pred cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcE
Confidence 334456667787765 22 333334456677777654322 11 11 2367889999999999999999999
Q ss_pred EEEECCCCeEEEEec-CCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECC
Q 002519 783 SILDAETQACRLSLQ-GHTKPIDSVCWDPSGELLASVSED-SVRVWTVG 829 (913)
Q Consensus 783 ~i~D~~t~~~~~~l~-~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~ 829 (913)
.||+..+.+++..++ .|...|+.+.|+||.+++++.+.+ ++.|..+.
T Consensus 306 ai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~ 354 (398)
T KOG0771|consen 306 AIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLA 354 (398)
T ss_pred EEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEe
Confidence 999999987776654 699999999999999999998888 77777664
No 206
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.61 E-value=3.3e-13 Score=155.52 Aligned_cols=233 Identities=14% Similarity=0.142 Sum_probs=167.2
Q ss_pred CcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeC---CCeEEEEEcCCCCceeEEeccCCCCeEEEEEcCCCC
Q 002519 655 KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF---DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKD 731 (913)
Q Consensus 655 g~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~---Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~ 731 (913)
..|.+||.+... ...+..+...+.+.+|+|||+.|+..+. +..|++||+.+ +.. +.+......+..+.|+|||+
T Consensus 179 ~~l~~~d~dg~~-~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~-G~~-~~l~~~~~~~~~~~~SPDG~ 255 (429)
T PRK03629 179 YELRVSDYDGYN-QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLAN-GAV-RQVASFPRHNGAPAFSPDGS 255 (429)
T ss_pred eeEEEEcCCCCC-CEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCC-CCe-EEccCCCCCcCCeEECCCCC
Confidence 478899987554 3445556778999999999999987653 45799999986 332 22222333455689999999
Q ss_pred eEEEEEeCCC--cEEEEEcCCCeeeEEeeC--CceEEEEecCCCEEEEEEcC-C--eEEEEECCCCeEEEEecCCCCCeE
Q 002519 732 DLICSCDGDG--EIRYWSINNGSCTRVFKG--GTAQMRFQPHLGRYLAAAAE-N--VVSILDAETQACRLSLQGHTKPID 804 (913)
Q Consensus 732 ~ll~sgs~Dg--~I~iwdl~~~~~~~~~~~--~~~~v~~s~~~~~ll~~~~d-g--~I~i~D~~t~~~~~~l~~h~~~V~ 804 (913)
.++++.+.+| .|++||+.+++....... ......|+|++..+++++.+ + .|+++|+.+++.. .+..+...+.
T Consensus 256 ~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~ 334 (429)
T PRK03629 256 KLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITWEGSQNQ 334 (429)
T ss_pred EEEEEEcCCCCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-EeecCCCCcc
Confidence 8887766665 489999998876554433 34678899999988877764 3 5666677776543 3333444566
Q ss_pred EEEEcCCCCEEEEEeCC----eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEEEEcCC---eEEEEECCCCc
Q 002519 805 SVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ---SLELWNMSENK 877 (913)
Q Consensus 805 sl~~spdg~~l~s~s~d----~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg---~I~iwd~~~~~ 877 (913)
..+|+|||++|+..+.+ .|.+||+.++.. . .+.. ........|+|||++|+.++.++ .++++++....
T Consensus 335 ~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~-~---~Lt~-~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~ 409 (429)
T PRK03629 335 DADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-Q---VLTD-TFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRF 409 (429)
T ss_pred CEEECCCCCEEEEEEccCCCceEEEEECCCCCe-E---EeCC-CCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCC
Confidence 78999999988776543 588999976632 2 2221 22234678999999999999876 47888997777
Q ss_pred EEEEcccCCCeEEEEEeCC
Q 002519 878 TMTLTAHEGLIAALAVSTE 896 (913)
Q Consensus 878 ~~~~~~h~~~V~~l~~spd 896 (913)
...+..|.+.+...+|+|-
T Consensus 410 ~~~l~~~~~~~~~p~Wsp~ 428 (429)
T PRK03629 410 KARLPATDGQVKFPAWSPY 428 (429)
T ss_pred eEECccCCCCcCCcccCCC
Confidence 7788889999999999873
No 207
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.60 E-value=1.5e-13 Score=150.30 Aligned_cols=275 Identities=14% Similarity=0.160 Sum_probs=205.3
Q ss_pred cCCCCEEEEEEecCCCEE-EEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCc
Q 002519 631 ASTSKVICCHFSSDGKLL-ATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGY 709 (913)
Q Consensus 631 ~H~~~V~~l~fspdg~~L-asgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~ 709 (913)
+|....+.|..+|||.|| |+|.+--.|++||+........-......|.-+.++.|-..++.-..|.+|-+..-.. .
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G--~ 126 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYG--R 126 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcC--e
Confidence 367778899999999865 5677788999999997766655555556677777787877788888888887765432 1
Q ss_pred eeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEee---CCceEEEEecCCCEEEEEEcCCeEEEEE
Q 002519 710 SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQMRFQPHLGRYLAAAAENVVSILD 786 (913)
Q Consensus 710 ~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~---~~~~~v~~s~~~~~ll~~~~dg~I~i~D 786 (913)
-.. + .-.....+++++.-.-.++ .++....|+-++++.|..+..|. +.++++..++..+.+++|+.+|.|..||
T Consensus 127 hy~-~-RIP~~GRDm~y~~~scDly-~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwD 203 (703)
T KOG2321|consen 127 HYR-T-RIPKFGRDMKYHKPSCDLY-LVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWD 203 (703)
T ss_pred eee-e-ecCcCCccccccCCCccEE-EeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEec
Confidence 111 1 1223345567665544566 45556789999999999888775 4567788889889999999999999999
Q ss_pred CCCCeEEEEecC------CCC-----CeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEeecCCCceEEEEEeC
Q 002519 787 AETQACRLSLQG------HTK-----PIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHP 854 (913)
Q Consensus 787 ~~t~~~~~~l~~------h~~-----~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp 854 (913)
.++...+.++.. |.. .|+++.|+.+|-.+++|... .|.|||+++... .+..-.....+|..+.|.+
T Consensus 204 pR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~p--l~~kdh~~e~pi~~l~~~~ 281 (703)
T KOG2321|consen 204 PRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKP--LLVKDHGYELPIKKLDWQD 281 (703)
T ss_pred chhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCc--eeecccCCccceeeecccc
Confidence 998766655542 222 49999999999999999888 999999997632 2222233456788888877
Q ss_pred CCCE-EEEEEcCCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEe
Q 002519 855 TYPS-LLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLW 912 (913)
Q Consensus 855 ~g~~-l~s~s~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~DG~I~IW 912 (913)
.+.. .++......++|||-.+++.+........|+.+|+-|++.++++|.+++.+..|
T Consensus 282 ~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~Ane~~~m~~y 340 (703)
T KOG2321|consen 282 TDQQNKVVSMDKRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTANESSKMHTY 340 (703)
T ss_pred cCCCceEEecchHHhhhcccccCCceeeccccCCcCceeeecCCceEEEecCCCcceeE
Confidence 6332 334444568999999999999887777889999999999999999988876644
No 208
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.58 E-value=1.4e-13 Score=145.29 Aligned_cols=238 Identities=15% Similarity=0.167 Sum_probs=156.4
Q ss_pred cceeeeEeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEE
Q 002519 622 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRV 701 (913)
Q Consensus 622 ~~~~~~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~I 701 (913)
.+...+.+++|...|+.++|++|+.++++++.|..+++||+..|..+..+..|...|..++|.|-+.++++-+.|...++
T Consensus 112 ~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~ 191 (434)
T KOG1009|consen 112 KWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEG 191 (434)
T ss_pred ceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccce
Confidence 46778889999999999999999999999999999999999999999999999999999999999999999999987777
Q ss_pred EEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeCCceEEEEecCCCEEEEEEc---
Q 002519 702 WDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAA--- 778 (913)
Q Consensus 702 wdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~s~~~~~ll~~~~--- 778 (913)
+++.... .+.... + ..+..-.+.+. .....++|.-++.+ .-...++|+|++..+++.+.
T Consensus 192 ~~~~~~~-~~~~~~-~-~~m~~~~~~~~---------e~~s~rLfhDeTlk------sFFrRlsfTPdG~llvtPag~~~ 253 (434)
T KOG1009|consen 192 FSAKLKQ-VIKRHG-L-DIMPAKAFNER---------EGKSTRLFHDETLK------SFFRRLSFTPDGSLLVTPAGLFK 253 (434)
T ss_pred eeeeeee-eeeeee-e-eEeeecccCCC---------CcceeeeeecCchh------hhhhhcccCCCCcEEEcccceee
Confidence 7775411 111110 0 00000111110 01112222222111 11123445555555544322
Q ss_pred -C-----CeEEEEECCCC-eEEEEecCCCCCeEEEEEcC------------------CCCEEEEEeCCeEEEEECCCCCC
Q 002519 779 -E-----NVVSILDAETQ-ACRLSLQGHTKPIDSVCWDP------------------SGELLASVSEDSVRVWTVGSGSE 833 (913)
Q Consensus 779 -d-----g~I~i~D~~t~-~~~~~l~~h~~~V~sl~~sp------------------dg~~l~s~s~d~I~vwdl~~~~~ 833 (913)
. +..++|+.... ++...+.+...++..+.|+| .+-.+++++.+.|+|||..+...
T Consensus 254 ~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~svyvydtq~~~P 333 (434)
T KOG1009|consen 254 VGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKNSVYVYDTQTLEP 333 (434)
T ss_pred eCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeecceEEEeccccccc
Confidence 1 12344433321 33444444444444444433 34568888899999999977644
Q ss_pred CceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE
Q 002519 834 GECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM 879 (913)
Q Consensus 834 ~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~ 879 (913)
..++. ..|...|+.++|+++|..+++.+.||...+..+...++-
T Consensus 334 ~~~v~--nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~elg 377 (434)
T KOG1009|consen 334 LAVVD--NIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWELG 377 (434)
T ss_pred eEEEe--eeeeeeecceeecCCCcEEEEeccCCceEEEEEcchhcc
Confidence 33333 346788999999999999999999997777766655443
No 209
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.58 E-value=2e-13 Score=140.20 Aligned_cols=234 Identities=17% Similarity=0.305 Sum_probs=179.5
Q ss_pred eccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCC--ceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEc
Q 002519 671 LEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG--YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSI 748 (913)
Q Consensus 671 l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~--~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl 748 (913)
+..-..+|+|.+|++|...+|++.....|.||...... +...++..|...|++|+|.|..++++ +|+.|..-++|..
T Consensus 6 ~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIv-tcs~drnayVw~~ 84 (361)
T KOG1523|consen 6 FHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIV-TCSHDRNAYVWTQ 84 (361)
T ss_pred eeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCcee-EccCCCCcccccc
Confidence 33456789999999999999999999999999987644 56788999999999999999987765 9999999999999
Q ss_pred C-CCe-----eeEEeeCCceEEEEecCCCEEEEEEcCCeEEEEECCCCeE----EEEecCCCCCeEEEEEcCCCCEEEEE
Q 002519 749 N-NGS-----CTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQAC----RLSLQGHTKPIDSVCWDPSGELLASV 818 (913)
Q Consensus 749 ~-~~~-----~~~~~~~~~~~v~~s~~~~~ll~~~~dg~I~i~D~~t~~~----~~~l~~h~~~V~sl~~spdg~~l~s~ 818 (913)
. .++ .+..++....++.|+|.+++|++++....|.||-.+...- .+.-+.++..|+++.|+|++-+|++|
T Consensus 85 ~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaG 164 (361)
T KOG1523|consen 85 PSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAG 164 (361)
T ss_pred CCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceeccc
Confidence 4 443 2345667889999999999999999999998887765421 22233467889999999999999999
Q ss_pred eCC-eEEEEEC-----CCCC----------CCceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCc--EEE
Q 002519 819 SED-SVRVWTV-----GSGS----------EGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK--TMT 880 (913)
Q Consensus 819 s~d-~I~vwdl-----~~~~----------~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~--~~~ 880 (913)
+.| ..+||.. +... ....+.++....+.+..+.|+|+|..|+..+.|..|.+-|..... ...
T Consensus 165 s~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~ 244 (361)
T KOG1523|consen 165 STDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQS 244 (361)
T ss_pred ccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhccc
Confidence 999 8888864 1110 112334444567889999999999999999999999999987764 333
Q ss_pred EcccCCCeEEEEEeCCCCEEEEEeCC
Q 002519 881 LTAHEGLIAALAVSTETGYVASASHD 906 (913)
Q Consensus 881 ~~~h~~~V~~l~~spdg~~Lasgs~D 906 (913)
+....-+..++.|-.+.. ++.+++|
T Consensus 245 ~~~~~lP~ls~~~ise~~-vv~ag~~ 269 (361)
T KOG1523|consen 245 VATAQLPLLSVSWISENS-VVAAGYD 269 (361)
T ss_pred hhhccCCceeeEeecCCc-eeecCCC
Confidence 333336666776654432 3334444
No 210
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.58 E-value=3.1e-14 Score=154.05 Aligned_cols=205 Identities=16% Similarity=0.211 Sum_probs=164.4
Q ss_pred CEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCceeEEeccCCCCeEEEE
Q 002519 646 KLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLD 725 (913)
Q Consensus 646 ~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~ 725 (913)
..|+.++.||++.|.+ +.++..+.+..|.+.|.|-+|+|||.-|+++++||.|+||.-. +....++......|+|++
T Consensus 76 d~~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrs--GMLRStl~Q~~~~v~c~~ 152 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRS--GMLRSTVVQNEESIRCAR 152 (737)
T ss_pred ceEEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEecc--chHHHHHhhcCceeEEEE
Confidence 4778888899999887 4678888999999999999999999999999999999999875 344444555678899999
Q ss_pred EcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEee---CCceEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCC
Q 002519 726 FHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKP 802 (913)
Q Consensus 726 fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~---~~~~~v~~s~~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~ 802 (913)
|.|+.+.++++.+ +.|.|=.+.....+-..+ +-+.++.|++..+.+++++.|-..+|||.. |..++.-..|+.+
T Consensus 153 W~p~S~~vl~c~g--~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~ 229 (737)
T KOG1524|consen 153 WAPNSNSIVFCQG--GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEYA 229 (737)
T ss_pred ECCCCCceEEecC--CeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc-CcccccCChhccc
Confidence 9999988886654 455555555443333333 345678899999999999999999999975 5566667779999
Q ss_pred eEEEEEcCCCCEEEEEeCCeEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEE
Q 002519 803 IDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELW 871 (913)
Q Consensus 803 V~sl~~spdg~~l~s~s~d~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iw 871 (913)
|++++|.|+ +.++.++..++++=..+ .+.|..++|++||..+++|+..|.|.+=
T Consensus 230 ITSva~npd-~~~~v~S~nt~R~~~p~--------------~GSifnlsWS~DGTQ~a~gt~~G~v~~A 283 (737)
T KOG1524|consen 230 ITSVAFNPE-KDYLLWSYNTARFSSPR--------------VGSIFNLSWSADGTQATCGTSTGQLIVA 283 (737)
T ss_pred eeeeeeccc-cceeeeeeeeeeecCCC--------------ccceEEEEEcCCCceeeccccCceEEEe
Confidence 999999999 77888888877733332 5678899999999999999999866543
No 211
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.57 E-value=1.1e-12 Score=151.79 Aligned_cols=232 Identities=17% Similarity=0.239 Sum_probs=166.2
Q ss_pred CcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeC---CCeEEEEEcCCCCceeEEeccCCCCeEEEEEcCCCC
Q 002519 655 KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF---DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKD 731 (913)
Q Consensus 655 g~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~---Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~ 731 (913)
..|++||.+. ...+.+..|...|.+.+|+|||+.|+..+. +..|++||+.+ +. ...+..+...+.+.+|+|||+
T Consensus 182 ~~l~~~d~dg-~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~-g~-~~~l~~~~g~~~~~~~SPDG~ 258 (435)
T PRK05137 182 KRLAIMDQDG-ANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLET-GQ-RELVGNFPGMTFAPRFSPDGR 258 (435)
T ss_pred eEEEEECCCC-CCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCC-Cc-EEEeecCCCcccCcEECCCCC
Confidence 4788888754 455667778889999999999999988764 46899999987 33 234445666778899999999
Q ss_pred eEEEEEeCCCc--EEEEEcCCCeeeEEeeC--CceEEEEecCCCEEEEEEc-C--CeEEEEECCCCeEEEEecCCCCCeE
Q 002519 732 DLICSCDGDGE--IRYWSINNGSCTRVFKG--GTAQMRFQPHLGRYLAAAA-E--NVVSILDAETQACRLSLQGHTKPID 804 (913)
Q Consensus 732 ~ll~sgs~Dg~--I~iwdl~~~~~~~~~~~--~~~~v~~s~~~~~ll~~~~-d--g~I~i~D~~t~~~~~~l~~h~~~V~ 804 (913)
.++++.+.++. |++||+.++........ ......|+|++..++.++. + ..|+++|+.+++... +..+...+.
T Consensus 259 ~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~-lt~~~~~~~ 337 (435)
T PRK05137 259 KVVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRR-ISFGGGRYS 337 (435)
T ss_pred EEEEEEecCCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEE-eecCCCccc
Confidence 98878777665 77789888766543322 2456889999998887764 3 368888987765443 333445567
Q ss_pred EEEEcCCCCEEEEEeCC----eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEEEEcC------CeEEEEECC
Q 002519 805 SVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY------QSLELWNMS 874 (913)
Q Consensus 805 sl~~spdg~~l~s~s~d----~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~d------g~I~iwd~~ 874 (913)
...|+|+|++|+..+.+ .|.+||+..+. ...+.. ...+....|+|||+.|+..+.+ ..|+++|+.
T Consensus 338 ~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~----~~~lt~-~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~ 412 (435)
T PRK05137 338 TPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG----ERILTS-GFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLT 412 (435)
T ss_pred CeEECCCCCEEEEEEcCCCceEEEEEECCCCc----eEeccC-CCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECC
Confidence 78999999988876543 68888875432 122222 2346778999999998887653 268888988
Q ss_pred CCcEEEEcccCCCeEEEEEeCC
Q 002519 875 ENKTMTLTAHEGLIAALAVSTE 896 (913)
Q Consensus 875 ~~~~~~~~~h~~~V~~l~~spd 896 (913)
.+....+. ..+.+...+|+|-
T Consensus 413 g~~~~~l~-~~~~~~~p~Wsp~ 433 (435)
T PRK05137 413 GRNEREVP-TPGDASDPAWSPL 433 (435)
T ss_pred CCceEEcc-CCCCccCcccCCC
Confidence 77665544 3555777788763
No 212
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.57 E-value=6.4e-13 Score=153.67 Aligned_cols=232 Identities=17% Similarity=0.151 Sum_probs=165.4
Q ss_pred CcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCC---CeEEEEEcCCCCceeEEeccCCCCeEEEEEcCCCC
Q 002519 655 KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFD---KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKD 731 (913)
Q Consensus 655 g~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D---g~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~ 731 (913)
..|.|||.+. ...+.+..+...+.+.+|+||++.|+.++.+ ..|++||+.+ +.. ..+........++.|+|+|+
T Consensus 184 ~~l~i~D~~g-~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~-g~~-~~l~~~~g~~~~~~~SpDG~ 260 (433)
T PRK04922 184 YALQVADSDG-YNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLAT-GQR-ELVASFRGINGAPSFSPDGR 260 (433)
T ss_pred EEEEEECCCC-CCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCC-CCE-EEeccCCCCccCceECCCCC
Confidence 4688999864 4455666777889999999999999988753 4699999986 332 23333445556789999999
Q ss_pred eEEEEEeCCC--cEEEEEcCCCeeeEEeeC--CceEEEEecCCCEEEEEEc-CC--eEEEEECCCCeEEEEecCCCCCeE
Q 002519 732 DLICSCDGDG--EIRYWSINNGSCTRVFKG--GTAQMRFQPHLGRYLAAAA-EN--VVSILDAETQACRLSLQGHTKPID 804 (913)
Q Consensus 732 ~ll~sgs~Dg--~I~iwdl~~~~~~~~~~~--~~~~v~~s~~~~~ll~~~~-dg--~I~i~D~~t~~~~~~l~~h~~~V~ 804 (913)
.++++.+.+| .|++||+.+++....... .....+|++++..+++++. ++ .|+++|+.+++.... ..+.....
T Consensus 261 ~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~l-t~~g~~~~ 339 (433)
T PRK04922 261 RLALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERL-TFQGNYNA 339 (433)
T ss_pred EEEEEEeCCCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-ecCCCCcc
Confidence 8887777666 599999998875543322 2356889999998888765 34 477778877654332 22334455
Q ss_pred EEEEcCCCCEEEEEeCC----eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEEEEcC---CeEEEEECCCCc
Q 002519 805 SVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY---QSLELWNMSENK 877 (913)
Q Consensus 805 sl~~spdg~~l~s~s~d----~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~d---g~I~iwd~~~~~ 877 (913)
.++|+|+|++|+..+.+ .|.+||+.++.. . .+.. ......+.|+|+|++|+..+.+ ..|+++++..+.
T Consensus 340 ~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~-~---~Lt~-~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~~ 414 (433)
T PRK04922 340 RASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSV-R---TLTP-GSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGRV 414 (433)
T ss_pred CEEECCCCCEEEEEECCCCceeEEEEECCCCCe-E---ECCC-CCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCc
Confidence 78999999988776432 699999976532 1 2222 2234567899999998888764 378888997766
Q ss_pred EEEEcccCCCeEEEEEeC
Q 002519 878 TMTLTAHEGLIAALAVST 895 (913)
Q Consensus 878 ~~~~~~h~~~V~~l~~sp 895 (913)
...+..+.+.+...+|+|
T Consensus 415 ~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 415 RQRLVSADGEVREPAWSP 432 (433)
T ss_pred eEEcccCCCCCCCCccCC
Confidence 666666777788888876
No 213
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.57 E-value=1.2e-12 Score=143.68 Aligned_cols=268 Identities=17% Similarity=0.273 Sum_probs=187.5
Q ss_pred CEEEEEEecCCCEEEEE-----eC-----CCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEc
Q 002519 635 KVICCHFSSDGKLLATG-----GH-----DKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDA 704 (913)
Q Consensus 635 ~V~~l~fspdg~~Lasg-----s~-----Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl 704 (913)
.++++.|||.|.+|.+= .. ...+.+|+++++.....+..-...-+++.|+.|..+.+- -..+.|.+|++
T Consensus 75 ~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~ar-lv~nev~f~~~ 153 (566)
T KOG2315|consen 75 KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQNGWVPQFSIDESLAAR-LVSNEVQFYDL 153 (566)
T ss_pred eeeeeeecccccccccccccccccCCCCCCCceeeeeeccceehhheehhhhcCcccccccchhhhhh-hhcceEEEEec
Confidence 89999999999999862 11 235779999996666555543333378999988754332 22456999999
Q ss_pred CCCCceeEEeccCCCCeEEEEEcCCCC-eEEEE-----EeCCCcEEEEEcCCCe------eeEEeeCCceEEEEecCCCE
Q 002519 705 DNPGYSLRTFMGHSASVMSLDFHPNKD-DLICS-----CDGDGEIRYWSINNGS------CTRVFKGGTAQMRFQPHLGR 772 (913)
Q Consensus 705 ~~~~~~~~~~~~h~~~V~sl~fsp~~~-~ll~s-----gs~Dg~I~iwdl~~~~------~~~~~~~~~~~v~~s~~~~~ 772 (913)
.+....... -|...|..+.++|... ..+|+ .+.-+.|+||.+.... +..-|+.....+.|...+.-
T Consensus 154 ~~f~~~~~k--l~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~ 231 (566)
T KOG2315|consen 154 GSFKTIQHK--LSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTA 231 (566)
T ss_pred CCccceeee--eeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCce
Confidence 873333333 3577899999999733 33332 3445779999887332 22334556667888888765
Q ss_pred EEEE-Ec-----------CCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEE-eCC--eEEEEECCCCCCCceE
Q 002519 773 YLAA-AA-----------ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASV-SED--SVRVWTVGSGSEGECV 837 (913)
Q Consensus 773 ll~~-~~-----------dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~-s~d--~I~vwdl~~~~~~~~i 837 (913)
|++. .. +..++++++....++..+. ..++|++++|+++++-|+++ +.- .+.|||++. ..
T Consensus 232 LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~----~~- 305 (566)
T KOG2315|consen 232 LLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRG----KP- 305 (566)
T ss_pred EEEEEEEeecCCCccccccceEEEEEecCceEEEecC-CCCCceEEEECCCCCEEEEEEecccceEEEEcCCC----CE-
Confidence 4443 22 2378888888555655554 57899999999999855444 333 899999953 23
Q ss_pred EEeecCCCceEEEEEeCCCCEEEEEEcC---CeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEeC------CCc
Q 002519 838 HELSCNGNKFHSCVFHPTYPSLLVIGCY---QSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASH------DKF 908 (913)
Q Consensus 838 ~~~~~~~~~i~~l~~sp~g~~l~s~s~d---g~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~------DG~ 908 (913)
.+....++-+++-|+|.|++|+.+|.+ |.|.|||+.+.+++...... .-+-+.|+|||.+|+|+.. |+.
T Consensus 306 -v~df~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~-~tt~~eW~PdGe~flTATTaPRlrvdNg 383 (566)
T KOG2315|consen 306 -VFDFPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAA-NTTVFEWSPDGEYFLTATTAPRLRVDNG 383 (566)
T ss_pred -eEeCCCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccC-CceEEEEcCCCcEEEEEeccccEEecCC
Confidence 334447788899999999999999987 69999999997777333222 2345689999999998874 677
Q ss_pred EEEeC
Q 002519 909 VKLWK 913 (913)
Q Consensus 909 I~IWd 913 (913)
|+||+
T Consensus 384 ~Kiwh 388 (566)
T KOG2315|consen 384 IKIWH 388 (566)
T ss_pred eEEEE
Confidence 88985
No 214
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.56 E-value=2.4e-13 Score=143.17 Aligned_cols=261 Identities=13% Similarity=0.186 Sum_probs=196.9
Q ss_pred cCCCCEEEEEEecCCC--EEEEEeCCCcEEEEECCCCceeeE------eccCCCCeEEEEECCCCCEEEEEeCCCeEEEE
Q 002519 631 ASTSKVICCHFSSDGK--LLATGGHDKKAVLWHTDTLKSKTN------LEEHSSLITDVRFSPSMPRLATSSFDKTVRVW 702 (913)
Q Consensus 631 ~H~~~V~~l~fspdg~--~Lasgs~Dg~V~vwd~~~~~~~~~------l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iw 702 (913)
.-...|..++|.-|+. .|...+.|..+..+++........ .......|..++.. +..|++|-.+|.+.+|
T Consensus 53 ~~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~ 130 (412)
T KOG3881|consen 53 DELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA--DGTLITCVSSGNLQVR 130 (412)
T ss_pred chhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc--CCEEEEEecCCcEEEE
Confidence 3456788888876653 555555677788887776554443 33455667776654 3378888889999999
Q ss_pred EcCCCC---ceeEEeccCCCCeEEEEEcCCCCeEEEEEeCC--CcEEEEEcCCCeeeEEeeC------------CceEEE
Q 002519 703 DADNPG---YSLRTFMGHSASVMSLDFHPNKDDLICSCDGD--GEIRYWSINNGSCTRVFKG------------GTAQMR 765 (913)
Q Consensus 703 dl~~~~---~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~D--g~I~iwdl~~~~~~~~~~~------------~~~~v~ 765 (913)
.++.+. ..+..+..+ ..+..+.-++...+++++|+.. ..+.|||++..+.+..-+. -...+.
T Consensus 131 ~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~ 209 (412)
T KOG3881|consen 131 HDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIR 209 (412)
T ss_pred eccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccce
Confidence 998432 223333323 5577788888888899999999 8999999998865544322 134577
Q ss_pred EecC--CCEEEEEEcCCeEEEEECCCC-eEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEee
Q 002519 766 FQPH--LGRYLAAAAENVVSILDAETQ-ACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELS 841 (913)
Q Consensus 766 ~s~~--~~~ll~~~~dg~I~i~D~~t~-~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~ 841 (913)
|.+. ...|++++.-+.|++||.+.+ +++..|..-+.+|+++...|++++|+++... .+..||++.+... ...+.
T Consensus 210 Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~--g~~~k 287 (412)
T KOG3881|consen 210 FLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLL--GCGLK 287 (412)
T ss_pred ecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceee--ccccC
Confidence 8777 678999999999999999987 6888888888999999999999999999888 9999999987322 23366
Q ss_pred cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEcccCCCeEEEEEeCC
Q 002519 842 CNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTE 896 (913)
Q Consensus 842 ~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spd 896 (913)
+-.+.|+++..+|..+++++++-|..|+|+|+.+.+++.-......+++|.+.++
T Consensus 288 g~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvKs~lt~il~~~~ 342 (412)
T KOG3881|consen 288 GITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVKSRLTFILLRDD 342 (412)
T ss_pred CccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhhccccEEEecCC
Confidence 6688899999999999999999999999999999776644444556666666543
No 215
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.56 E-value=3.4e-13 Score=138.48 Aligned_cols=271 Identities=18% Similarity=0.198 Sum_probs=188.9
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEE-eCCCeEEEEEcCCCCceeEEecc
Q 002519 638 CCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATS-SFDKTVRVWDADNPGYSLRTFMG 716 (913)
Q Consensus 638 ~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasg-s~Dg~V~Iwdl~~~~~~~~~~~~ 716 (913)
-++|||+|+++|+.+.- .+.|-|.++.+....+.. -..|.-|.|..|..+++++ ..|+.|.+|++... +-...+..
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~c-ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qp-ew~ckIde 89 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLC-LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQP-EWYCKIDE 89 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHH-HHHhhheeeeccceeeeeeeeccceEEEEEeecc-eeEEEecc
Confidence 46899999999999855 788888888765554433 4567889999888877666 55889999999873 33455566
Q ss_pred CCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEE--eeCCceEEEEecCCCEEEEEEc----------------
Q 002519 717 HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV--FKGGTAQMRFQPHLGRYLAAAA---------------- 778 (913)
Q Consensus 717 h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~--~~~~~~~v~~s~~~~~ll~~~~---------------- 778 (913)
....+.+++|+|||++++.+...|-.|.+|.+.+.++... .+.....++|++++.+.+.++.
T Consensus 90 g~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ 169 (447)
T KOG4497|consen 90 GQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWI 169 (447)
T ss_pred CCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHH
Confidence 7788999999999999999999999999999998765432 2334455666666554433332
Q ss_pred --------------------CCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCC-----
Q 002519 779 --------------------ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGS----- 832 (913)
Q Consensus 779 --------------------dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~----- 832 (913)
++.+.+||.--.-.+..+. -.-.+..++|+|.+.+|++|+.| .+||.+--+-+
T Consensus 170 ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe-~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~ef 248 (447)
T KOG4497|consen 170 LLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYE-RGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEF 248 (447)
T ss_pred HHHhcCCCcccccCceECCCCcEEEEecchhhheeeeee-eccceeEEEeccccceEEeeccchhhhhhceeeeeehhhh
Confidence 1123334322211111111 12457889999999999999999 77764411100
Q ss_pred ------------------------------------------C----------CceEEEee------cCCCceEEEEEeC
Q 002519 833 ------------------------------------------E----------GECVHELS------CNGNKFHSCVFHP 854 (913)
Q Consensus 833 ------------------------------------------~----------~~~i~~~~------~~~~~i~~l~~sp 854 (913)
. ...+..++ .....+..++|++
T Consensus 249 lhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~ 328 (447)
T KOG4497|consen 249 LHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSC 328 (447)
T ss_pred ccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecC
Confidence 0 00011111 1122356789999
Q ss_pred CCCEEEEEEcC--CeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEe
Q 002519 855 TYPSLLVIGCY--QSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLW 912 (913)
Q Consensus 855 ~g~~l~s~s~d--g~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~DG~I~IW 912 (913)
|..++++-... +.+.+||+...++..+.....+|....|+|....|+.+.....+++|
T Consensus 329 Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk~piraf~WdP~~prL~vctg~srLY~W 388 (447)
T KOG4497|consen 329 DSTYAATRNDKYPNALWLWDLQNLKLHAVLIQKHPIRAFEWDPGRPRLVVCTGKSRLYFW 388 (447)
T ss_pred CceEEeeecCCCCceEEEEechhhhhhhhhhhccceeEEEeCCCCceEEEEcCCceEEEE
Confidence 99887776554 58999999999888777788899999999999888888777778888
No 216
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.55 E-value=4.7e-13 Score=155.05 Aligned_cols=252 Identities=20% Similarity=0.307 Sum_probs=188.5
Q ss_pred CCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCceeEEeccC---CCCeEEEEEcC-C
Q 002519 654 DKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGH---SASVMSLDFHP-N 729 (913)
Q Consensus 654 Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h---~~~V~sl~fsp-~ 729 (913)
+..|..||.... .+....-..+.|+|-...|+++.....|+|||.+. +..+..|..+ ...|+.+++.. +
T Consensus 1049 t~~i~~W~~~~~------~~n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~-~~~l~~F~n~~~~~t~Vs~l~liNe~ 1121 (1387)
T KOG1517|consen 1049 TNPIGNWDQKFM------TGNNQPPKTLKFHPFEPQIAAADDRERIRVWDWEK-GRLLNGFDNGAFPDTRVSDLELINEQ 1121 (1387)
T ss_pred cccccchHHHHH------hcCCCCCceeeecCCCceeEEcCCcceEEEEeccc-CceeccccCCCCCCCccceeeeeccc
Confidence 345778875421 12222556778889888999999888999999987 6666666543 45788888754 3
Q ss_pred CCeEEEEEeCCCcEEEEEcCC-----CeeeEEee----------CCceEEEEecCCCEEEEEEcCCeEEEEECCCCeEEE
Q 002519 730 KDDLICSCDGDGEIRYWSINN-----GSCTRVFK----------GGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRL 794 (913)
Q Consensus 730 ~~~ll~sgs~Dg~I~iwdl~~-----~~~~~~~~----------~~~~~v~~s~~~~~ll~~~~dg~I~i~D~~t~~~~~ 794 (913)
+..++++|+.||.||||+--. .+.+..+. +...-+.|.-..+++++++.-..|+|||.....++.
T Consensus 1122 D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~ 1201 (1387)
T KOG1517|consen 1122 DDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVA 1201 (1387)
T ss_pred chhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEe
Confidence 455778999999999997432 22332221 111335677778999999989999999999988877
Q ss_pred EecC-CCCCeEEEEEcC-CCCEEEEEeCC-eEEEEECCCCCCCceEEEeecCCCc--eEEEEEeCCCC-EEEEEEcCCeE
Q 002519 795 SLQG-HTKPIDSVCWDP-SGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNK--FHSCVFHPTYP-SLLVIGCYQSL 868 (913)
Q Consensus 795 ~l~~-h~~~V~sl~~sp-dg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~--i~~l~~sp~g~-~l~s~s~dg~I 868 (913)
.+.. ....|+++.-+- .|+.|++|..| .|++||.+.......+...+.|... |..+.+.+.|- .|++|+.+|.|
T Consensus 1202 diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I 1281 (1387)
T KOG1517|consen 1202 DIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDI 1281 (1387)
T ss_pred ecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeE
Confidence 7654 344577665443 46899999999 9999999987766677777777776 99999988654 59999999999
Q ss_pred EEEECCCCcEE---EEcccC--C-CeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 002519 869 ELWNMSENKTM---TLTAHE--G-LIAALAVSTETGYVASASHDKFVKLWK 913 (913)
Q Consensus 869 ~iwd~~~~~~~---~~~~h~--~-~V~~l~~spdg~~Lasgs~DG~I~IWd 913 (913)
++||++..... .+..|. + .++++..+++..+||+|+. +.|+||+
T Consensus 1282 ~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~ 1331 (1387)
T KOG1517|consen 1282 QLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYS 1331 (1387)
T ss_pred EEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEe
Confidence 99999884322 444443 3 5999999999999999998 9999996
No 217
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.55 E-value=7.1e-15 Score=166.10 Aligned_cols=244 Identities=20% Similarity=0.242 Sum_probs=186.2
Q ss_pred cceeeeEeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEE
Q 002519 622 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRV 701 (913)
Q Consensus 622 ~~~~~~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~I 701 (913)
+-.+....+||.+.|+.++.+.+..++|+++.|..|+||.+.++..+..+.+|++.|++|+|+|-. +.+.||++++
T Consensus 221 t~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~ 296 (1113)
T KOG0644|consen 221 TARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRI 296 (1113)
T ss_pred chhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHhccccceeeeccCccc----cCCCCCceEe
Confidence 345777899999999999999999999999999999999999999999999999999999999964 7788999999
Q ss_pred EEcCCCCceeEEe----c-cCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeCCceEEEEecCC-CEEEE
Q 002519 702 WDADNPGYSLRTF----M-GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHL-GRYLA 775 (913)
Q Consensus 702 wdl~~~~~~~~~~----~-~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~s~~~-~~ll~ 775 (913)
||.+- ..+... + ....-+.++-|...+..++ +++.|+.-..|.+....+.... ..-+.++.+. ...++
T Consensus 297 wd~r~--~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~-Tgs~d~ea~n~e~~~l~~~~~~---lif~t~ssd~~~~~~~ 370 (1113)
T KOG0644|consen 297 WDARL--EPRIYVPRPLKFTEKDLVDSILFENNGDRFL-TGSRDGEARNHEFEQLAWRSNL---LIFVTRSSDLSSIVVT 370 (1113)
T ss_pred ccccc--cccccCCCCCCcccccceeeeeccccccccc-cccCCcccccchhhHhhhhccc---eEEEecccccccccee
Confidence 99972 111110 1 1234566677776666554 9999999999887643322111 0011111121 34455
Q ss_pred EEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCC-EEEEEeCC-eEEEEECCCCCCCceEEEeecCCCceEEEEEe
Q 002519 776 AAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGE-LLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFH 853 (913)
Q Consensus 776 ~~~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~-~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~s 853 (913)
+-.+-.+.+|++.++...+.+.+|...+..+.++|-.. +..+++.| ...|||+-.+.. ++........+..+.|+
T Consensus 371 ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~p---ik~y~~gh~kl~d~kFS 447 (1113)
T KOG0644|consen 371 ARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIP---IKHYFIGHGKLVDGKFS 447 (1113)
T ss_pred eeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCc---ceeeecccceeeccccC
Confidence 55677899999999999999999999999999999665 55567777 999999977643 33333336778889999
Q ss_pred CCCCEEEEEEcCCeEEEEECCCCcE
Q 002519 854 PTYPSLLVIGCYQSLELWNMSENKT 878 (913)
Q Consensus 854 p~g~~l~s~s~dg~I~iwd~~~~~~ 878 (913)
++|..++....-|.++|+....++.
T Consensus 448 qdgts~~lsd~hgql~i~g~gqs~s 472 (1113)
T KOG0644|consen 448 QDGTSIALSDDHGQLYILGTGQSKS 472 (1113)
T ss_pred CCCceEecCCCCCceEEeccCCCcc
Confidence 9999999988889999998766543
No 218
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.55 E-value=5e-13 Score=142.37 Aligned_cols=266 Identities=18% Similarity=0.211 Sum_probs=175.5
Q ss_pred CCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCC--EEEEEeCCCeEEEEEcCCCCce
Q 002519 633 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP--RLATSSFDKTVRVWDADNPGYS 710 (913)
Q Consensus 633 ~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~--~Lasgs~Dg~V~Iwdl~~~~~~ 710 (913)
.-+|+|+.|-+...+|+.|+.+.. -+++ ..++-...++.+.+++. ++..+ ..|.+.|++.....
T Consensus 13 g~PiYa~~~i~s~~llvagggg~~-----~~~~------~~n~vssl~~~~~~g~~~~~~~~~---~~i~~~~~d~~~ts 78 (398)
T KOG0771|consen 13 GFPIYAAKWINSRHLLVAGGGGQA-----AKTG------IGNSVSSLHLVLTGGGGKGRSGIS---SEIHIFDTDDMPTS 78 (398)
T ss_pred CCceEEEEeeCCCceEEEeccCcc-----cccC------CCCcceeEEEEecCCCcccccccc---eeeEeeecCCcchh
Confidence 347999999999988888776543 0111 11111123344444322 11111 12444444321100
Q ss_pred -------eEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCe-eeE----------EeeCCceEEEEecCCCE
Q 002519 711 -------LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS-CTR----------VFKGGTAQMRFQPHLGR 772 (913)
Q Consensus 711 -------~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~-~~~----------~~~~~~~~v~~s~~~~~ 772 (913)
+...............+|.++..++....++...-|..-... +.. ...+....++|+.++..
T Consensus 79 ls~~~~~~~~vG~~~~~~~~~~~h~~~~~~~~k~~~~~~~~~~e~~~~~d~~~~~~a~v~~~l~~~g~~k~vaf~~~gs~ 158 (398)
T KOG0771|consen 79 LSESPGGIILVGCDDGAPYRESVHPNGNGRARKLPSGCECFHFEFVASSDFNAETAANVYQKLVDFGQQKVVAFNGDGSK 158 (398)
T ss_pred hccCcCCeeEeccCCCcchhhhccccCCeeeeecCCcccccccccccccccchhhhhhHhHHHhhcCcceEEEEcCCCCE
Confidence 011111111233344566666666555555544444433221 110 11223467999999999
Q ss_pred EEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCC------------------
Q 002519 773 YLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEG------------------ 834 (913)
Q Consensus 773 ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d~I~vwdl~~~~~~------------------ 834 (913)
+.+++.||++|||+......+..+..|...|.++.|+|||++|++.+.|..+||+++++...
T Consensus 159 latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~ 238 (398)
T KOG0771|consen 159 LATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGADSARVWSVNTGAALARKTPFSKDEMFSSCRFS 238 (398)
T ss_pred eeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCCceEEEEeccCchhhhcCCcccchhhhhceec
Confidence 99999999999999888888888888999999999999999999999999999999876100
Q ss_pred -----ceEEEe----------------------------ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE--
Q 002519 835 -----ECVHEL----------------------------SCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-- 879 (913)
Q Consensus 835 -----~~i~~~----------------------------~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~-- 879 (913)
..+..+ ......|++++.+++|++++.|+.||.|-||+..+.+++
T Consensus 239 ~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~ 318 (398)
T KOG0771|consen 239 VDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQY 318 (398)
T ss_pred ccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEe
Confidence 000000 001236889999999999999999999999999998887
Q ss_pred EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEe
Q 002519 880 TLTAHEGLIAALAVSTETGYVASASHDKFVKLW 912 (913)
Q Consensus 880 ~~~~h~~~V~~l~~spdg~~Lasgs~DG~I~IW 912 (913)
....|...|+.+.|+||.+++++.+.|..+.|.
T Consensus 319 vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~ 351 (398)
T KOG0771|consen 319 VKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVT 351 (398)
T ss_pred ehhhheeeeeeEEEcCCcCcccccccCCceeEE
Confidence 445799999999999999999998888877664
No 219
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.55 E-value=3.3e-11 Score=135.05 Aligned_cols=271 Identities=14% Similarity=0.177 Sum_probs=187.5
Q ss_pred cceeeeEeecCCCCEEEEEEecCCCEEEEEeC----CCcEEEEECCCC--c--eeeEeccCCCCeEEEEECCCCCEEEEE
Q 002519 622 SFKEANSVRASTSKVICCHFSSDGKLLATGGH----DKKAVLWHTDTL--K--SKTNLEEHSSLITDVRFSPSMPRLATS 693 (913)
Q Consensus 622 ~~~~~~~l~~H~~~V~~l~fspdg~~Lasgs~----Dg~V~vwd~~~~--~--~~~~l~~h~~~V~~l~fspdg~~Lasg 693 (913)
.+..+..+. -......+++++++++|.+... ++.|..|++... . .+..........+.|++++++++|+++
T Consensus 26 ~l~~~~~~~-~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~va 104 (345)
T PF10282_consen 26 TLTLVQTVA-EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVA 104 (345)
T ss_dssp EEEEEEEEE-ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEE
T ss_pred CceEeeeec-CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEE
Confidence 455555533 3455777999999999999877 468999988753 2 333444345567789999999999999
Q ss_pred eC-CCeEEEEEcCCCCceeEE---ec----------cCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCe--eeE--
Q 002519 694 SF-DKTVRVWDADNPGYSLRT---FM----------GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS--CTR-- 755 (913)
Q Consensus 694 s~-Dg~V~Iwdl~~~~~~~~~---~~----------~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~--~~~-- 755 (913)
.. +|.|.+++++..+..... +. .......++.|+|+++.++++.-....|++|++.... ...
T Consensus 105 ny~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~ 184 (345)
T PF10282_consen 105 NYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVD 184 (345)
T ss_dssp ETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEE
T ss_pred EccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEee
Confidence 86 899999999875543332 11 1234578899999999888777667889999998765 322
Q ss_pred Eee----CCceEEEEecCCCEEEEEEc-CCeEEEEECC--CCe--EEEEecCC------CCCeEEEEEcCCCCEEEEEeC
Q 002519 756 VFK----GGTAQMRFQPHLGRYLAAAA-ENVVSILDAE--TQA--CRLSLQGH------TKPIDSVCWDPSGELLASVSE 820 (913)
Q Consensus 756 ~~~----~~~~~v~~s~~~~~ll~~~~-dg~I~i~D~~--t~~--~~~~l~~h------~~~V~sl~~spdg~~l~s~s~ 820 (913)
.+. .+...+.|+++++++++... ++.|.+|++. ++. .+..+... ......|+++|||++|+++..
T Consensus 185 ~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr 264 (345)
T PF10282_consen 185 SIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNR 264 (345)
T ss_dssp EEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEEC
T ss_pred ccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEec
Confidence 222 24567999999998887776 7789999887 442 22222211 125788999999998888876
Q ss_pred C--eEEEEECC-CCCCCceEEEeecCCCceEEEEEeCCCCEEEEEEcC-CeEEEEEC--CCCcEEEEc--ccCCCeEEEE
Q 002519 821 D--SVRVWTVG-SGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY-QSLELWNM--SENKTMTLT--AHEGLIAALA 892 (913)
Q Consensus 821 d--~I~vwdl~-~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~d-g~I~iwd~--~~~~~~~~~--~h~~~V~~l~ 892 (913)
+ .|.+|++. .......+..+...+.....+.++|+|++|+++..+ +.|.+|++ .++.+.... ..-....||.
T Consensus 265 ~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~ 344 (345)
T PF10282_consen 265 GSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIV 344 (345)
T ss_dssp TTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEEEEE
T ss_pred cCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCEEEe
Confidence 6 99999994 334556667777666778999999999999998854 68998866 466655332 2334455655
Q ss_pred E
Q 002519 893 V 893 (913)
Q Consensus 893 ~ 893 (913)
|
T Consensus 345 f 345 (345)
T PF10282_consen 345 F 345 (345)
T ss_dssp E
T ss_pred C
Confidence 4
No 220
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.54 E-value=5.5e-13 Score=137.85 Aligned_cols=276 Identities=18% Similarity=0.319 Sum_probs=187.8
Q ss_pred CCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCc-----eeeEeccC------------CCCeEEEEECCCCC--EEEE
Q 002519 632 STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK-----SKTNLEEH------------SSLITDVRFSPSMP--RLAT 692 (913)
Q Consensus 632 H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~-----~~~~l~~h------------~~~V~~l~fspdg~--~Las 692 (913)
..+-|.+|.|..+|.+||||+.+|.|.+|.-+... ....+..| ...|..|+|.+++. .++.
T Consensus 24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl 103 (433)
T KOG1354|consen 24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL 103 (433)
T ss_pred hhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence 35679999999999999999999999999654222 23334333 34588999988765 5777
Q ss_pred EeCCCeEEEEEcCCCCcee----------------------------------EEe-ccCCCCeEEEEEcCCCCeEEEEE
Q 002519 693 SSFDKTVRVWDADNPGYSL----------------------------------RTF-MGHSASVMSLDFHPNKDDLICSC 737 (913)
Q Consensus 693 gs~Dg~V~Iwdl~~~~~~~----------------------------------~~~-~~h~~~V~sl~fsp~~~~ll~sg 737 (913)
...|++|++|.+...+... +.+ ..|.--|.+|.++.|...++ ++
T Consensus 104 stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~l-SA 182 (433)
T KOG1354|consen 104 STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFL-SA 182 (433)
T ss_pred ecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEe-ec
Confidence 7889999999986532111 111 25788899999999988766 54
Q ss_pred eCCCcEEEEEcCCCee-eEE--ee--------CCceEEEEecCC-CEEEEEEcCCeEEEEECCCCeEE----EEec----
Q 002519 738 DGDGEIRYWSINNGSC-TRV--FK--------GGTAQMRFQPHL-GRYLAAAAENVVSILDAETQACR----LSLQ---- 797 (913)
Q Consensus 738 s~Dg~I~iwdl~~~~~-~~~--~~--------~~~~~v~~s~~~-~~ll~~~~dg~I~i~D~~t~~~~----~~l~---- 797 (913)
+|-.|.+|+++--.. ... ++ .-+++..|+|.. +.++..++.|+|++.|++..... ..+.
T Consensus 183 -DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEeped 261 (433)
T KOG1354|consen 183 -DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPED 261 (433)
T ss_pred -cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccC
Confidence 588999999874321 111 11 124556788876 45666777899999999853211 1111
Q ss_pred --------CCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCCceEEEeecCC---------------CceEEEEEeC
Q 002519 798 --------GHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNG---------------NKFHSCVFHP 854 (913)
Q Consensus 798 --------~h~~~V~sl~~spdg~~l~s~s~d~I~vwdl~~~~~~~~i~~~~~~~---------------~~i~~l~~sp 854 (913)
+--..|..+.|+.+|+|+++-+.-+|+|||+.... +.+..+..|. ..-..|+|+-
T Consensus 262 p~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~--~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg 339 (433)
T KOG1354|consen 262 PSSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEA--KPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSG 339 (433)
T ss_pred CcchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccC--CcceEEeehHhHHHHHHHHhhccchhheeEEEEcC
Confidence 11235788999999999998888899999996543 2333333221 1124688999
Q ss_pred CCCEEEEEEcCCeEEEEECCCCcEE--EEc--------------------cc-------------CCCeEEEEEeCCCCE
Q 002519 855 TYPSLLVIGCYQSLELWNMSENKTM--TLT--------------------AH-------------EGLIAALAVSTETGY 899 (913)
Q Consensus 855 ~g~~l~s~s~dg~I~iwd~~~~~~~--~~~--------------------~h-------------~~~V~~l~~spdg~~ 899 (913)
++.++++|+..+.+++|++..+... ++. +. ...|...+|+|..+.
T Consensus 340 ~~~~v~TGsy~n~frvf~~~~gsk~d~tl~asr~~~~~~~~~k~~~V~~~g~r~~~~~~vd~ldf~kkilh~aWhp~en~ 419 (433)
T KOG1354|consen 340 NDSYVMTGSYNNVFRVFNLARGSKEDFTLEASRKNMKPRKVLKLRLVSSSGKRKRDEISVDALDFRKKILHTAWHPKENS 419 (433)
T ss_pred CcceEecccccceEEEecCCCCcceeecccccccCCcccccccceeeecCCCccccccccchhhhhhHHHhhccCCccce
Confidence 9999999999999999996544322 110 00 112445689999999
Q ss_pred EEEEeCCCcEEEe
Q 002519 900 VASASHDKFVKLW 912 (913)
Q Consensus 900 Lasgs~DG~I~IW 912 (913)
||.+..+. ++||
T Consensus 420 ia~aatnn-lyif 431 (433)
T KOG1354|consen 420 IAVAATNN-LYIF 431 (433)
T ss_pred eeeeecCc-eEEe
Confidence 98887654 5554
No 221
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.54 E-value=1e-11 Score=127.83 Aligned_cols=231 Identities=16% Similarity=0.229 Sum_probs=161.7
Q ss_pred CEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEE-EeCC------CeEEEEEcCCC
Q 002519 635 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLAT-SSFD------KTVRVWDADNP 707 (913)
Q Consensus 635 ~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Las-gs~D------g~V~Iwdl~~~ 707 (913)
....++|+-|...+++|..+| ++||+++..+.......+.+.+.-+..---.++|+. |+.+ ..|.|||-..
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k- 84 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLK- 84 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEeccc-
Confidence 455599999999999987665 899999875554433333333222221112345443 3332 4799999443
Q ss_pred CceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcC-CCeeeEEeeC---CceEEEEecCC-CEEEEEE--cCC
Q 002519 708 GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN-NGSCTRVFKG---GTAQMRFQPHL-GRYLAAA--AEN 780 (913)
Q Consensus 708 ~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~-~~~~~~~~~~---~~~~v~~s~~~-~~ll~~~--~dg 780 (913)
.+++.++. ...+|.+|++.++ +++ +. .++.|++|... +.+.++.+.. +..-.++.+.. ..+++.- .-|
T Consensus 85 ~~~i~el~-f~~~I~~V~l~r~--riV-vv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~G 159 (346)
T KOG2111|consen 85 ERCIIELS-FNSEIKAVKLRRD--RIV-VV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTG 159 (346)
T ss_pred CcEEEEEE-eccceeeEEEcCC--eEE-EE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccc
Confidence 56666654 6788999999865 243 32 47899999987 4555555543 22223344433 3333322 258
Q ss_pred eEEEEECCCCeE--EEEecCCCCCeEEEEEcCCCCEEEEEeCC--eEEEEECCCCCCCceEEEeecC--CCceEEEEEeC
Q 002519 781 VVSILDAETQAC--RLSLQGHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSGSEGECVHELSCN--GNKFHSCVFHP 854 (913)
Q Consensus 781 ~I~i~D~~t~~~--~~~l~~h~~~V~sl~~spdg~~l~s~s~d--~I~vwdl~~~~~~~~i~~~~~~--~~~i~~l~~sp 854 (913)
.|.|.|+...+. ...+.+|...|.|++.+-+|.+||+++.. -|||||..++ ..+.++... ...|.+++|+|
T Consensus 160 qvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g---~~l~E~RRG~d~A~iy~iaFSp 236 (346)
T KOG2111|consen 160 QVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDG---TLLQELRRGVDRADIYCIAFSP 236 (346)
T ss_pred eEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCC---cEeeeeecCCchheEEEEEeCC
Confidence 999999987765 47788999999999999999999999988 7999999988 455555432 34699999999
Q ss_pred CCCEEEEEEcCCeEEEEECCC
Q 002519 855 TYPSLLVIGCYQSLELWNMSE 875 (913)
Q Consensus 855 ~g~~l~s~s~dg~I~iwd~~~ 875 (913)
+..+|++++..|+|+||.++.
T Consensus 237 ~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 237 NSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred CccEEEEEcCCCeEEEEEeec
Confidence 999999999999999998765
No 222
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.54 E-value=5.8e-12 Score=145.21 Aligned_cols=203 Identities=16% Similarity=0.209 Sum_probs=145.8
Q ss_pred eEEEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEe--CCCcEEEEEcCCCeee--EEeeCCceEEEEecCCCEE
Q 002519 698 TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCD--GDGEIRYWSINNGSCT--RVFKGGTAQMRFQPHLGRY 773 (913)
Q Consensus 698 ~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs--~Dg~I~iwdl~~~~~~--~~~~~~~~~v~~s~~~~~l 773 (913)
.|.+||.+. ...+.+..+...+.+.+|+|||+.++++.. .+..|++||+.+++.. ..+++....+.|+|++..+
T Consensus 180 ~l~~~d~dg--~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~L 257 (429)
T PRK03629 180 ELRVSDYDG--YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKL 257 (429)
T ss_pred eEEEEcCCC--CCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEE
Confidence 688888874 233444556778999999999998876543 2457999999888543 3455666778999999988
Q ss_pred EEEEc-CC--eEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC----eEEEEECCCCCCCceEEEeecCCCc
Q 002519 774 LAAAA-EN--VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNK 846 (913)
Q Consensus 774 l~~~~-dg--~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d----~I~vwdl~~~~~~~~i~~~~~~~~~ 846 (913)
+.... ++ .|++||+.+++.... ..+...+...+|+|||+.|+..+.+ .|.++|+.++. ...+......
T Consensus 258 a~~~~~~g~~~I~~~d~~tg~~~~l-t~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~----~~~lt~~~~~ 332 (429)
T PRK03629 258 AFALSKTGSLNLYVMDLASGQIRQV-TDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGA----PQRITWEGSQ 332 (429)
T ss_pred EEEEcCCCCcEEEEEECCCCCEEEc-cCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCC----eEEeecCCCC
Confidence 87643 44 599999998866543 3344567889999999988776653 45555665442 2223333444
Q ss_pred eEEEEEeCCCCEEEEEEcC---CeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEeCCCc
Q 002519 847 FHSCVFHPTYPSLLVIGCY---QSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKF 908 (913)
Q Consensus 847 i~~l~~sp~g~~l~s~s~d---g~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~DG~ 908 (913)
.....|+|+|++|+..+.+ ..|++||+.+++...+... .......|+|||++|+.++.|+.
T Consensus 333 ~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~ 396 (429)
T PRK03629 333 NQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLTDT-FLDETPSIAPNGTMVIYSSSQGM 396 (429)
T ss_pred ccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEEeCCC-CCCCCceECCCCCEEEEEEcCCC
Confidence 5678899999999887654 3689999998887655532 23456889999999999988765
No 223
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.52 E-value=4.6e-12 Score=142.02 Aligned_cols=252 Identities=14% Similarity=0.152 Sum_probs=163.0
Q ss_pred eeeEeecCCCCEEEEEEecCCCEEEEEe-CCCcEEEEECCCCceeeEeccC-------CCCeEEEEECCCCCEEEEEeC-
Q 002519 625 EANSVRASTSKVICCHFSSDGKLLATGG-HDKKAVLWHTDTLKSKTNLEEH-------SSLITDVRFSPSMPRLATSSF- 695 (913)
Q Consensus 625 ~~~~l~~H~~~V~~l~fspdg~~Lasgs-~Dg~V~vwd~~~~~~~~~l~~h-------~~~V~~l~fspdg~~Lasgs~- 695 (913)
.+.+++... ...++++|+||+++++++ .++.|.|+|.++.+.++.+... ...+..|..++....++..-.
T Consensus 70 ~v~~i~~G~-~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd 148 (369)
T PF02239_consen 70 VVATIKVGG-NPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKD 148 (369)
T ss_dssp EEEEEE-SS-EEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETT
T ss_pred EEEEEecCC-CcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEcc
Confidence 333444333 468899999999999876 5799999999999999887643 346788888998886666655
Q ss_pred CCeEEEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeCCce------EEEEecC
Q 002519 696 DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTA------QMRFQPH 769 (913)
Q Consensus 696 Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~------~v~~s~~ 769 (913)
.+.|.+.|......................|.|++++++++...+..|-++|.++++.+..+..+.. .--.+|.
T Consensus 149 ~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~ 228 (369)
T PF02239_consen 149 TGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPG 228 (369)
T ss_dssp TTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETT
T ss_pred CCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCC
Confidence 4888888887644444344445567788999999998887777888999999999988766542211 1112333
Q ss_pred CCEE----------EEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEE---eCC--eEEEEECCCCCCC
Q 002519 770 LGRY----------LAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASV---SED--SVRVWTVGSGSEG 834 (913)
Q Consensus 770 ~~~l----------l~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~---s~d--~I~vwdl~~~~~~ 834 (913)
.+.+ +.....+.+.+||....+.+.++...... .-+..+|+++++++. +.+ .|.|+|.++.
T Consensus 229 ~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl--- 304 (369)
T PF02239_consen 229 FGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTL--- 304 (369)
T ss_dssp TEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGT---
T ss_pred cceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCc---
Confidence 3222 23333445667888889999999877666 778889999999988 444 9999999876
Q ss_pred ceEEEeec-CCCceEEEEEeCCCCEEEEEEcCC--eEEEEECCCCcEEEE
Q 002519 835 ECVHELSC-NGNKFHSCVFHPTYPSLLVIGCYQ--SLELWNMSENKTMTL 881 (913)
Q Consensus 835 ~~i~~~~~-~~~~i~~l~~sp~g~~l~s~s~dg--~I~iwd~~~~~~~~~ 881 (913)
+.+..+.. ....+..+.|+++|++++++..++ .|.|||..+.+++..
T Consensus 305 ~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~ 354 (369)
T PF02239_consen 305 KVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKR 354 (369)
T ss_dssp EEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEE
T ss_pred ceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEE
Confidence 44455432 233588999999999988887664 699999999998843
No 224
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.52 E-value=7.5e-11 Score=132.14 Aligned_cols=266 Identities=16% Similarity=0.167 Sum_probs=180.2
Q ss_pred EEEEeCC----CcEEEEEC--CCCceeeEe-ccCCCCeEEEEECCCCCEEEEEeC----CCeEEEEEcCCC-Cc--eeEE
Q 002519 648 LATGGHD----KKAVLWHT--DTLKSKTNL-EEHSSLITDVRFSPSMPRLATSSF----DKTVRVWDADNP-GY--SLRT 713 (913)
Q Consensus 648 Lasgs~D----g~V~vwd~--~~~~~~~~l-~~h~~~V~~l~fspdg~~Lasgs~----Dg~V~Iwdl~~~-~~--~~~~ 713 (913)
+++|+++ +.|++|++ ++++....- .........|+++|++++|+++.. ++.|..|++... +. .+..
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~ 81 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNS 81 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeee
Confidence 4566666 68999888 344432211 124455778999999999999977 579999999874 22 2223
Q ss_pred eccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCC-CeeeEE---e-------------eCCceEEEEecCCCEEEEE
Q 002519 714 FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN-GSCTRV---F-------------KGGTAQMRFQPHLGRYLAA 776 (913)
Q Consensus 714 ~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~-~~~~~~---~-------------~~~~~~v~~s~~~~~ll~~ 776 (913)
..........|+++|+++.++++...+|.|.++++.. +..... + ..+...+.++|++++++++
T Consensus 82 ~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~ 161 (345)
T PF10282_consen 82 VPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVP 161 (345)
T ss_dssp EEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEE
T ss_pred eccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEE
Confidence 3323445567999999998887777899999999987 433322 1 1234578999999998887
Q ss_pred Ec-CCeEEEEECCCCe--E--EEEec-CCCCCeEEEEEcCCCCEEEEEeCC--eEEEEECCC-CCCCceEEEeecC----
Q 002519 777 AA-ENVVSILDAETQA--C--RLSLQ-GHTKPIDSVCWDPSGELLASVSED--SVRVWTVGS-GSEGECVHELSCN---- 843 (913)
Q Consensus 777 ~~-dg~I~i~D~~t~~--~--~~~l~-~h~~~V~sl~~spdg~~l~s~s~d--~I~vwdl~~-~~~~~~i~~~~~~---- 843 (913)
.. ...|++|++.... . ...+. .....-+.++|+|+++++++..+. .|.+|++.. ......+..+...
T Consensus 162 dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~ 241 (345)
T PF10282_consen 162 DLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGF 241 (345)
T ss_dssp ETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTS
T ss_pred ecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccc
Confidence 66 5689999887654 2 22232 234567899999999988887766 899999872 2223333333321
Q ss_pred --CCceEEEEEeCCCCEEEEEEcC-CeEEEEECC--CCcEE---EEcccCCCeEEEEEeCCCCEEEEEe-CCCcEEEeC
Q 002519 844 --GNKFHSCVFHPTYPSLLVIGCY-QSLELWNMS--ENKTM---TLTAHEGLIAALAVSTETGYVASAS-HDKFVKLWK 913 (913)
Q Consensus 844 --~~~i~~l~~sp~g~~l~s~s~d-g~I~iwd~~--~~~~~---~~~~h~~~V~~l~~spdg~~Lasgs-~DG~I~IWd 913 (913)
......+.++|+|++|+++... +.|.+|+++ ++++. .+.......+.++++|+|++|++++ .++.|.+|+
T Consensus 242 ~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~ 320 (345)
T PF10282_consen 242 TGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFD 320 (345)
T ss_dssp CSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEE
T ss_pred cccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEE
Confidence 1257889999999999887754 699999984 34443 3333455689999999999999887 567888874
No 225
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.51 E-value=5.7e-12 Score=145.34 Aligned_cols=233 Identities=17% Similarity=0.154 Sum_probs=157.4
Q ss_pred CcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCC---CeEEEEEcCCCCceeEEeccCCCCeEEEEEcCCCC
Q 002519 655 KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFD---KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKD 731 (913)
Q Consensus 655 g~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D---g~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~ 731 (913)
..|.+||.+ +.....+..+...+.+.+|+|||+.|+..+.+ ..|++||+.+ +... .+......+.+..|+||++
T Consensus 176 ~~L~~~D~d-G~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~-g~~~-~l~~~~g~~~~~~~SPDG~ 252 (427)
T PRK02889 176 YQLQISDAD-GQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLAT-GRRR-VVANFKGSNSAPAWSPDGR 252 (427)
T ss_pred cEEEEECCC-CCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCC-CCEE-EeecCCCCccceEECCCCC
Confidence 457777764 45555666778889999999999999888753 3599999987 3332 2333445567899999999
Q ss_pred eEEEEEeCCCcEEEEEc--CCCeeeEEee--CCceEEEEecCCCEEEEEEc-CCe--EEEEECCCCeEEEEecCCCCCeE
Q 002519 732 DLICSCDGDGEIRYWSI--NNGSCTRVFK--GGTAQMRFQPHLGRYLAAAA-ENV--VSILDAETQACRLSLQGHTKPID 804 (913)
Q Consensus 732 ~ll~sgs~Dg~I~iwdl--~~~~~~~~~~--~~~~~v~~s~~~~~ll~~~~-dg~--I~i~D~~t~~~~~~l~~h~~~V~ 804 (913)
.++++.+.+|...||.+ ..+....... .......|+|++..++.++. ++. |++++..+++..... .+.....
T Consensus 253 ~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt-~~g~~~~ 331 (427)
T PRK02889 253 TLAVALSRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVT-FTGSYNT 331 (427)
T ss_pred EEEEEEccCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEe-cCCCCcC
Confidence 88888888887666654 4444322221 23456789999998887665 344 444455555433222 2233345
Q ss_pred EEEEcCCCCEEEEEeCC----eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEEEEcCC---eEEEEECCCCc
Q 002519 805 SVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ---SLELWNMSENK 877 (913)
Q Consensus 805 sl~~spdg~~l~s~s~d----~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg---~I~iwd~~~~~ 877 (913)
..+|+|||++|+..+.+ .|.+||+.++.. ..+.. ........|+|+++.|+.++.++ .+++.++....
T Consensus 332 ~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~----~~lt~-~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~g~~ 406 (427)
T PRK02889 332 SPRISPDGKLLAYISRVGGAFKLYVQDLATGQV----TALTD-TTRDESPSFAPNGRYILYATQQGGRSVLAAVSSDGRI 406 (427)
T ss_pred ceEECCCCCEEEEEEccCCcEEEEEEECCCCCe----EEccC-CCCccCceECCCCCEEEEEEecCCCEEEEEEECCCCc
Confidence 68999999988876643 599999977632 12222 22346779999999999888665 56777775544
Q ss_pred EEEEcccCCCeEEEEEeCC
Q 002519 878 TMTLTAHEGLIAALAVSTE 896 (913)
Q Consensus 878 ~~~~~~h~~~V~~l~~spd 896 (913)
...+..+.+.+...+|+|-
T Consensus 407 ~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 407 KQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred eEEeecCCCCCCCCccCCC
Confidence 4466667788888888873
No 226
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.50 E-value=2.2e-12 Score=151.95 Aligned_cols=249 Identities=19% Similarity=0.266 Sum_probs=172.2
Q ss_pred EECCCCceeeEeccCCCCeEEEEECCCC-CEEEEEeCCCeEEEEEcCCCC------ceeEEeccCCCCeEEEEEcCCCCe
Q 002519 660 WHTDTLKSKTNLEEHSSLITDVRFSPSM-PRLATSSFDKTVRVWDADNPG------YSLRTFMGHSASVMSLDFHPNKDD 732 (913)
Q Consensus 660 wd~~~~~~~~~l~~h~~~V~~l~fspdg-~~Lasgs~Dg~V~Iwdl~~~~------~~~~~~~~h~~~V~sl~fsp~~~~ 732 (913)
|+. .|..+..+..|+..|..++.+++. .+|++||.||+|+||++..-. +...++......+.++.+++.+..
T Consensus 1034 W~p-~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~ 1112 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQ 1112 (1431)
T ss_pred CCc-cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCe
Confidence 543 477888899999999999988765 899999999999999987421 223344446778899999988776
Q ss_pred EEEEEeCCCcEEEEEcCCCee-------eEEee----CCceE-EEEecC-CC-EEEEEEcCCeEEEEECCCCeEEEEecC
Q 002519 733 LICSCDGDGEIRYWSINNGSC-------TRVFK----GGTAQ-MRFQPH-LG-RYLAAAAENVVSILDAETQACRLSLQG 798 (913)
Q Consensus 733 ll~sgs~Dg~I~iwdl~~~~~-------~~~~~----~~~~~-v~~s~~-~~-~ll~~~~dg~I~i~D~~t~~~~~~l~~ 798 (913)
+. .++.||.|++.+++-... .+..+ +.+.. .++... .. .++++..-+.|..||+++.....+++.
T Consensus 1113 ~A-v~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~ 1191 (1431)
T KOG1240|consen 1113 FA-VSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKN 1191 (1431)
T ss_pred EE-EEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhc
Confidence 55 669999999999876211 11111 11111 122222 23 566677788999999998876665553
Q ss_pred --CCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEee-cCCCceEEEEEeCCCC---EEEEEE--cCCeEE
Q 002519 799 --HTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELS-CNGNKFHSCVFHPTYP---SLLVIG--CYQSLE 869 (913)
Q Consensus 799 --h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~-~~~~~i~~l~~sp~g~---~l~s~s--~dg~I~ 869 (913)
..+.|++++.+|.+.++++|+.. .+.+||+|-+ ..+..+. .+..++..+..+|-.+ .+++++ ..+.|.
T Consensus 1192 ~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~---~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs 1268 (1431)
T KOG1240|consen 1192 QLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFR---VPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVS 1268 (1431)
T ss_pred CccccceeEEEecCCceEEEEecCCceEEEEEeecC---ceeecccCcccCCcceEEeeccCCCCceEEEecccCCCcee
Confidence 35789999999999999999988 9999999865 3333332 2345666666666443 444444 457999
Q ss_pred EEECCCCcEE-EEcc-------------------cCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 002519 870 LWNMSENKTM-TLTA-------------------HEGLIAALAVSTETGYVASASHDKFVKLWK 913 (913)
Q Consensus 870 iwd~~~~~~~-~~~~-------------------h~~~V~~l~~spdg~~Lasgs~DG~I~IWd 913 (913)
+|++.++.+. .+.. +.-....+++..-+.++.+|+.|..|+.||
T Consensus 1269 ~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD 1332 (1431)
T KOG1240|consen 1269 TWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWD 1332 (1431)
T ss_pred eeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeecc
Confidence 9999988654 1111 111223344445566899999999999998
No 227
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.50 E-value=9.8e-14 Score=150.59 Aligned_cols=164 Identities=18% Similarity=0.283 Sum_probs=126.3
Q ss_pred ceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCceeEEeccCCCCeEEEEEcCC-CCeEEEEEeCCCcEE
Q 002519 666 KSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPN-KDDLICSCDGDGEIR 744 (913)
Q Consensus 666 ~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~-~~~ll~sgs~Dg~I~ 744 (913)
.....+.||.+.|.|+.|+.+|.+|++||+|-.|.|||.-..+.....-.+|...|.++.|-|. ++.++++|..|..|+
T Consensus 41 ~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~ 120 (758)
T KOG1310|consen 41 DLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIK 120 (758)
T ss_pred chhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEE
Confidence 3456788999999999999999999999999999999998644444455699999999999985 566888999999999
Q ss_pred EEEcCCCee----------eEEee---CCceEEEEecCC-CEEEEEEcCCeEEEEECCCCeEE-EEe---------cCCC
Q 002519 745 YWSINNGSC----------TRVFK---GGTAQMRFQPHL-GRYLAAAAENVVSILDAETQACR-LSL---------QGHT 800 (913)
Q Consensus 745 iwdl~~~~~----------~~~~~---~~~~~v~~s~~~-~~ll~~~~dg~I~i~D~~t~~~~-~~l---------~~h~ 800 (913)
+||+...+. .+.+. ..+..++..|.+ ..+++++.||+|+-||++..... ... ...-
T Consensus 121 lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~l 200 (758)
T KOG1310|consen 121 LFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQL 200 (758)
T ss_pred EEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhh
Confidence 999985321 11122 234557777777 67889999999999999974211 111 1111
Q ss_pred CCeEEEEEcCCCC-EEEEEeCC-eEEEEECC
Q 002519 801 KPIDSVCWDPSGE-LLASVSED-SVRVWTVG 829 (913)
Q Consensus 801 ~~V~sl~~spdg~-~l~s~s~d-~I~vwdl~ 829 (913)
-...|+.++|... +|++|+.| .+++||.+
T Consensus 201 ielk~ltisp~rp~~laVGgsdpfarLYD~R 231 (758)
T KOG1310|consen 201 IELKCLTISPSRPYYLAVGGSDPFARLYDRR 231 (758)
T ss_pred heeeeeeecCCCCceEEecCCCchhhhhhhh
Confidence 2467889999665 88999999 99999975
No 228
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.50 E-value=3e-12 Score=147.69 Aligned_cols=222 Identities=18% Similarity=0.246 Sum_probs=151.5
Q ss_pred eEeecCCCCEEEEEEecCCCEEEEEeCC---CcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEE-EEeCCCeEEEE
Q 002519 627 NSVRASTSKVICCHFSSDGKLLATGGHD---KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLA-TSSFDKTVRVW 702 (913)
Q Consensus 627 ~~l~~H~~~V~~l~fspdg~~Lasgs~D---g~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~La-sgs~Dg~V~Iw 702 (913)
..+..+.+.|.+.+|+|||+.|+..+.+ ..|++||+.+++... +....+.+.+.+|+|||+.|+ +.+.+|...||
T Consensus 189 ~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy 267 (427)
T PRK02889 189 QSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIY 267 (427)
T ss_pred eEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCCceEE
Confidence 4455678889999999999999887753 359999999886543 333445677899999999886 45678877777
Q ss_pred EcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEc--CCCeeeEE-eeC-CceEEEEecCCCEEEEEEc
Q 002519 703 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSI--NNGSCTRV-FKG-GTAQMRFQPHLGRYLAAAA 778 (913)
Q Consensus 703 dl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl--~~~~~~~~-~~~-~~~~v~~s~~~~~ll~~~~ 778 (913)
.++..+...+.+..+...+....|+|||+.+++++..+|...||.+ .+++.... +.+ ......|+|++..++.++.
T Consensus 268 ~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~ 347 (427)
T PRK02889 268 TVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISR 347 (427)
T ss_pred EEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEc
Confidence 6653333455566566666778999999988877665666666655 44443332 222 2345789999999888776
Q ss_pred CC---eEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC----eEEEEECCCCCCCceEEEeecCCCceEEEE
Q 002519 779 EN---VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFHSCV 851 (913)
Q Consensus 779 dg---~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d----~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~ 851 (913)
++ .|++||+.+++...... ......++|+|||++|+..+.+ .+.+.++. + .....+..+.+.+...+
T Consensus 348 ~~g~~~I~v~d~~~g~~~~lt~--~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~-g---~~~~~l~~~~g~~~~p~ 421 (427)
T PRK02889 348 VGGAFKLYVQDLATGQVTALTD--TTRDESPSFAPNGRYILYATQQGGRSVLAAVSSD-G---RIKQRLSVQGGDVREPS 421 (427)
T ss_pred cCCcEEEEEEECCCCCeEEccC--CCCccCceECCCCCEEEEEEecCCCEEEEEEECC-C---CceEEeecCCCCCCCCc
Confidence 54 69999998886543322 2334678999999987777654 35555653 2 23333334455566667
Q ss_pred EeCC
Q 002519 852 FHPT 855 (913)
Q Consensus 852 ~sp~ 855 (913)
|+|-
T Consensus 422 wsp~ 425 (427)
T PRK02889 422 WGPF 425 (427)
T ss_pred cCCC
Confidence 7663
No 229
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.49 E-value=1.5e-11 Score=133.45 Aligned_cols=302 Identities=16% Similarity=0.187 Sum_probs=207.8
Q ss_pred ccCCCCCCCCCCcccccccCccceeeeEeecCCCCEEEEEEecCCCEEEEEeCCC---------------cEEEEECCCC
Q 002519 601 SHDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDK---------------KAVLWHTDTL 665 (913)
Q Consensus 601 ~~d~~~~~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~Lasgs~Dg---------------~V~vwd~~~~ 665 (913)
++.+..........+.++.+..+..+..+ -...|..+.|||.++||.+=+... .+.|||+.++
T Consensus 41 SP~G~~l~~~~~~~V~~~~g~~~~~l~~~--~~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg 118 (561)
T COG5354 41 SPLGTYLFSEHAAGVECWGGPSKAKLVRF--RHPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASG 118 (561)
T ss_pred cCcchheehhhccceEEccccchhheeee--ecCCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCc
Confidence 33334444444444445555454433333 345699999999999999866433 4999999999
Q ss_pred ceeeEeccCCCC--eE-EEEECCCCCEEEEEeCCCeEEEEEcCCCCceeEEeccC-CCCeEEEEEcCCCCe-EEEE----
Q 002519 666 KSKTNLEEHSSL--IT-DVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGH-SASVMSLDFHPNKDD-LICS---- 736 (913)
Q Consensus 666 ~~~~~l~~h~~~--V~-~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h-~~~V~sl~fsp~~~~-ll~s---- 736 (913)
..+..+..-... .+ -+.|+.+++++|-. ....+.|+++ ++......+..- ...|....|+|.+++ .||.
T Consensus 119 ~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPE 196 (561)
T COG5354 119 MIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPE 196 (561)
T ss_pred eeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEec-CCccccCchhhccccceeeEEecCCCCCceEEEEccc
Confidence 999999887766 66 78899988877655 3345999997 323222222111 356888889987433 2222
Q ss_pred -EeCCCcEEEEEcCCCeeeEE---eeCCceEEEEecCCCEEEEEEc-----------CCeEEEEECCCCeEEEEecCCCC
Q 002519 737 -CDGDGEIRYWSINNGSCTRV---FKGGTAQMRFQPHLGRYLAAAA-----------ENVVSILDAETQACRLSLQGHTK 801 (913)
Q Consensus 737 -gs~Dg~I~iwdl~~~~~~~~---~~~~~~~v~~s~~~~~ll~~~~-----------dg~I~i~D~~t~~~~~~l~~h~~ 801 (913)
.+.++.++||.+..++.+.. ++.....+.|.+.+.++++-.. +..++|+++....+.... +-.+
T Consensus 197 k~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~-~~~~ 275 (561)
T COG5354 197 KLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEK-DLKD 275 (561)
T ss_pred cCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceec-cccc
Confidence 45688999999987765543 4456667889999887766432 357888888855544443 5678
Q ss_pred CeEEEEEcCCCCEEEEEe--CC-eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEEEEcC---CeEEEEECCC
Q 002519 802 PIDSVCWDPSGELLASVS--ED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY---QSLELWNMSE 875 (913)
Q Consensus 802 ~V~sl~~spdg~~l~s~s--~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~d---g~I~iwd~~~ 875 (913)
+|..++|.|.++.+++++ .. .+.++|++.. .... .....-..+.|+|.++++++++.| |.|.+||...
T Consensus 276 pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N----l~~~--~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~ 349 (561)
T COG5354 276 PVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN----LRFY--FPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAG 349 (561)
T ss_pred cceeeeecccCCceeEEecccccceeecccccc----eEEe--cCCcccccccccCcccEEEEecCCccccceEEeccCC
Confidence 999999999988666555 44 8999999753 2222 224556778999999999999887 5899999887
Q ss_pred CcEEEEcccCCCeEEEEEeCCCCEEEEEe------CCCcEEEeC
Q 002519 876 NKTMTLTAHEGLIAALAVSTETGYVASAS------HDKFVKLWK 913 (913)
Q Consensus 876 ~~~~~~~~h~~~V~~l~~spdg~~Lasgs------~DG~I~IWd 913 (913)
...+.-.-......-+.|+||+.++.++. .|..|+|||
T Consensus 350 rf~~~~~~~~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~ 393 (561)
T COG5354 350 RFKVAGAFNGLNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWD 393 (561)
T ss_pred ceEEEEEeecCCceEeeccCCceEEEecCCCcccccCcceEEEE
Confidence 76553222333445568999999887764 477899996
No 230
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.48 E-value=1.8e-12 Score=134.36 Aligned_cols=250 Identities=16% Similarity=0.267 Sum_probs=189.6
Q ss_pred ccceeeeEeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECC-CCceeeEec-cCCCCeEEEEECCCCCEEEEEeCCCe
Q 002519 621 FSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTD-TLKSKTNLE-EHSSLITDVRFSPSMPRLATSSFDKT 698 (913)
Q Consensus 621 ~~~~~~~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~-~~~~~~~l~-~h~~~V~~l~fspdg~~Lasgs~Dg~ 698 (913)
+.+.....++||.+.|++...-|...-+++.+.|.+|+||--. .++.-..+. ....+++++.+.++...|++|-..|+
T Consensus 12 ~kp~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngt 91 (404)
T KOG1409|consen 12 KKPELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGT 91 (404)
T ss_pred cchhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecce
Confidence 3566778899999999999999988899999999999999543 444333332 34578999999999999999999999
Q ss_pred EEEEEcCCC---CceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEee--CCceEEEEecCCCEE
Q 002519 699 VRVWDADNP---GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK--GGTAQMRFQPHLGRY 773 (913)
Q Consensus 699 V~Iwdl~~~---~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~--~~~~~v~~s~~~~~l 773 (913)
|.-+.+... ...++.+..|...|..+.|+.... .+++++.|..+..--.+.+..+..+. .....+.+... +.
T Consensus 92 vtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e-~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~--~~ 168 (404)
T KOG1409|consen 92 VTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHE-WVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDAL--YA 168 (404)
T ss_pred EEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCce-eEEEeccccceEEEeeccCCcccceEeeccCCCCceeeE--EE
Confidence 999877642 344667778999999999987655 45588888777655555554443322 22222222221 44
Q ss_pred EEEEcCCeEEEE--ECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEeecCCCceEEE
Q 002519 774 LAAAAENVVSIL--DAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSC 850 (913)
Q Consensus 774 l~~~~dg~I~i~--D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l 850 (913)
+++...|.|.+. +......+.++.+|...+++++|.+...+|.+|..| .|.+||+.-. .....++.+|...|..+
T Consensus 169 fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~--~g~~~el~gh~~kV~~l 246 (404)
T KOG1409|consen 169 FVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGR--KGTAYELQGHNDKVQAL 246 (404)
T ss_pred EecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCC--cceeeeeccchhhhhhh
Confidence 555556655554 344557888999999999999999999999999999 9999999643 34566777888889888
Q ss_pred EEeCCCCEEEEEEcCCeEEEEECCC
Q 002519 851 VFHPTYPSLLVIGCYQSLELWNMSE 875 (913)
Q Consensus 851 ~~sp~g~~l~s~s~dg~I~iwd~~~ 875 (913)
..-+--+.+++++.||.|.+|+++.
T Consensus 247 ~~~~~t~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 247 SYAQHTRQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred hhhhhheeeeeccCCCeEEEEeccc
Confidence 8888888999999999999999864
No 231
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.48 E-value=3.3e-12 Score=134.68 Aligned_cols=235 Identities=16% Similarity=0.175 Sum_probs=177.3
Q ss_pred CCCCeEEEEECCCCC--EEEEEeCCCeEEEEEcCCCCce-----eEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEE
Q 002519 674 HSSLITDVRFSPSMP--RLATSSFDKTVRVWDADNPGYS-----LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYW 746 (913)
Q Consensus 674 h~~~V~~l~fspdg~--~Lasgs~Dg~V~Iwdl~~~~~~-----~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iw 746 (913)
....|..++|.-++. .|+.++.|..+..+++...+.. +.........|..+.... . .|++|-.+|.+.+|
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~d--g-~Litc~~sG~l~~~ 130 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLAD--G-TLITCVSSGNLQVR 130 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhcC--C-EEEEEecCCcEEEE
Confidence 345677778865544 4555546777777777653221 113344566777777652 3 45588999999999
Q ss_pred EcCCCe-----eeEEee-CCceEEEEecCCCEEEE-EEcC--CeEEEEECCCCeEEEEecCCC---------CCeEEEEE
Q 002519 747 SINNGS-----CTRVFK-GGTAQMRFQPHLGRYLA-AAAE--NVVSILDAETQACRLSLQGHT---------KPIDSVCW 808 (913)
Q Consensus 747 dl~~~~-----~~~~~~-~~~~~v~~s~~~~~ll~-~~~d--g~I~i~D~~t~~~~~~l~~h~---------~~V~sl~~ 808 (913)
.++.+. .+..-. .+...+.-++....+++ |+.+ +.+.|||++..+.++.-+.-. -+++++.|
T Consensus 131 ~~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~F 210 (412)
T KOG3881|consen 131 HDKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRF 210 (412)
T ss_pred eccCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeecccee
Confidence 998443 222222 23445556666666666 6667 789999999987776654321 35788999
Q ss_pred cCC--CCEEEEEeCC-eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE--EEcc
Q 002519 809 DPS--GELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM--TLTA 883 (913)
Q Consensus 809 spd--g~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~--~~~~ 883 (913)
.+. ...|++++.- .|++||.+.. .+++..+...+..++++...|++++|+++...+.+..||++.++.. .+.+
T Consensus 211 l~g~~~~~fat~T~~hqvR~YDt~~q--RRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg 288 (412)
T KOG3881|consen 211 LEGSPNYKFATITRYHQVRLYDTRHQ--RRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKG 288 (412)
T ss_pred cCCCCCceEEEEecceeEEEecCccc--CcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCC
Confidence 987 7788888877 9999999865 4677777777999999999999999999999999999999999988 4789
Q ss_pred cCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 002519 884 HEGLIAALAVSTETGYVASASHDKFVKLWK 913 (913)
Q Consensus 884 h~~~V~~l~~spdg~~Lasgs~DG~I~IWd 913 (913)
..+.|++|..+|...+|++||-|..|||+|
T Consensus 289 ~tGsirsih~hp~~~~las~GLDRyvRIhD 318 (412)
T KOG3881|consen 289 ITGSIRSIHCHPTHPVLASCGLDRYVRIHD 318 (412)
T ss_pred ccCCcceEEEcCCCceEEeeccceeEEEee
Confidence 999999999999999999999999999997
No 232
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.48 E-value=1.5e-11 Score=126.69 Aligned_cols=229 Identities=13% Similarity=0.202 Sum_probs=164.9
Q ss_pred CeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCce-eEEeccCCCCeEEEEEcCCCCeEEEEEeCC------CcEEEEEcC
Q 002519 677 LITDVRFSPSMPRLATSSFDKTVRVWDADNPGYS-LRTFMGHSASVMSLDFHPNKDDLICSCDGD------GEIRYWSIN 749 (913)
Q Consensus 677 ~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~-~~~~~~h~~~V~sl~fsp~~~~ll~sgs~D------g~I~iwdl~ 749 (913)
...+++|+-|...+++|.++| .|||+++.-++. .+.+....-.+..+-|- .+.+.++|+.+ ..|.|||-.
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR--~N~laLVGGg~~pky~pNkviIWDD~ 83 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFR--SNYLALVGGGSRPKYPPNKVIIWDDL 83 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhh--hceEEEecCCCCCCCCCceEEEEecc
Confidence 355699999999999999888 899999752221 11222112233333343 23445556544 579999977
Q ss_pred CCeeeEEe--eCCceEEEEecCCCEEEEEEcCCeEEEEECC-CCeEEEEecCC--CCCeEEEEEcCCCCEEEEEeCC--e
Q 002519 750 NGSCTRVF--KGGTAQMRFQPHLGRYLAAAAENVVSILDAE-TQACRLSLQGH--TKPIDSVCWDPSGELLASVSED--S 822 (913)
Q Consensus 750 ~~~~~~~~--~~~~~~v~~s~~~~~ll~~~~dg~I~i~D~~-t~~~~~~l~~h--~~~V~sl~~spdg~~l~s~s~d--~ 822 (913)
..+++..+ ...+..+++.++ .++...++.|+||... +.+.++.+..- ...+.+++-.-+..+||.-+.. .
T Consensus 84 k~~~i~el~f~~~I~~V~l~r~---riVvvl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~Gq 160 (346)
T KOG2111|consen 84 KERCIIELSFNSEIKAVKLRRD---RIVVVLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQ 160 (346)
T ss_pred cCcEEEEEEeccceeeEEEcCC---eEEEEecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccce
Confidence 77777654 567777887765 4556678899999887 44666655542 3334444444455577776666 8
Q ss_pred EEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEEEEcCC-eEEEEECCCCcEE-EEc--ccCCCeEEEEEeCCCC
Q 002519 823 VRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ-SLELWNMSENKTM-TLT--AHEGLIAALAVSTETG 898 (913)
Q Consensus 823 I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg-~I~iwd~~~~~~~-~~~--~h~~~V~~l~~spdg~ 898 (913)
|.|-|+...... .-..+..|...|.+++.+-+|..+++++..| .|+|||..+++.+ ++. .....|.+++|+|+..
T Consensus 161 vQi~dL~~~~~~-~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s 239 (346)
T KOG2111|consen 161 VQIVDLASTKPN-APSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSS 239 (346)
T ss_pred EEEEEhhhcCcC-CceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCcc
Confidence 999999765322 3467788999999999999999999999999 5899999999987 333 3456899999999999
Q ss_pred EEEEEeCCCcEEEe
Q 002519 899 YVASASHDKFVKLW 912 (913)
Q Consensus 899 ~Lasgs~DG~I~IW 912 (913)
+||++|+.|+|+||
T Consensus 240 ~LavsSdKgTlHiF 253 (346)
T KOG2111|consen 240 WLAVSSDKGTLHIF 253 (346)
T ss_pred EEEEEcCCCeEEEE
Confidence 99999999999998
No 233
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.47 E-value=1e-11 Score=143.67 Aligned_cols=221 Identities=18% Similarity=0.248 Sum_probs=152.8
Q ss_pred eeeEeecCCCCEEEEEEecCCCEEEEEeCC---CcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEE-EEeCCC--e
Q 002519 625 EANSVRASTSKVICCHFSSDGKLLATGGHD---KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLA-TSSFDK--T 698 (913)
Q Consensus 625 ~~~~l~~H~~~V~~l~fspdg~~Lasgs~D---g~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~La-sgs~Dg--~ 698 (913)
....+..|...|.+.+|+|||+.|+.++.+ ..|++||+.+++.. .+..+.+...+++|+|||+.|+ +.+.+| .
T Consensus 195 ~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~-~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~ 273 (433)
T PRK04922 195 NPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE-LVASFRGINGAPSFSPDGRRLALTLSRDGNPE 273 (433)
T ss_pred CceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE-EeccCCCCccCceECCCCCEEEEEEeCCCCce
Confidence 344566778889999999999999988744 46999999887653 3334455566899999999776 445555 5
Q ss_pred EEEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCc--EEEEEcCCCeeeEEe-eC-CceEEEEecCCCEEE
Q 002519 699 VRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGE--IRYWSINNGSCTRVF-KG-GTAQMRFQPHLGRYL 774 (913)
Q Consensus 699 V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~--I~iwdl~~~~~~~~~-~~-~~~~v~~s~~~~~ll 774 (913)
|++||+.+ +. +..+..+......++|+||++.++++...+|. |+++|+.+++..... .+ ......|+|++..++
T Consensus 274 Iy~~d~~~-g~-~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~~Ia 351 (433)
T PRK04922 274 IYVMDLGS-RQ-LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNARASVSPDGKKIA 351 (433)
T ss_pred EEEEECCC-CC-eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEE
Confidence 99999986 33 44455565566789999999988877666665 667777776654332 22 234579999999988
Q ss_pred EEEcCC---eEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC----eEEEEECCCCCCCceEEEeecCCCce
Q 002519 775 AAAAEN---VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKF 847 (913)
Q Consensus 775 ~~~~dg---~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d----~I~vwdl~~~~~~~~i~~~~~~~~~i 847 (913)
....++ .|.+||+.+++.. .+. +......+.|+|||++|+..+.+ .|.++++... ....+..+...+
T Consensus 352 ~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~----~~~~l~~~~g~~ 425 (433)
T PRK04922 352 MVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGR----VRQRLVSADGEV 425 (433)
T ss_pred EEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC----ceEEcccCCCCC
Confidence 876543 6999999888655 333 22345577999999977766653 5777777432 233333334556
Q ss_pred EEEEEeC
Q 002519 848 HSCVFHP 854 (913)
Q Consensus 848 ~~l~~sp 854 (913)
...+|+|
T Consensus 426 ~~p~wsp 432 (433)
T PRK04922 426 REPAWSP 432 (433)
T ss_pred CCCccCC
Confidence 6666765
No 234
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.45 E-value=8.1e-13 Score=142.31 Aligned_cols=249 Identities=20% Similarity=0.279 Sum_probs=188.5
Q ss_pred CceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCceeEEeccCCCCeEEEEEcCC-CCeEEEEEeCCCcE
Q 002519 665 LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPN-KDDLICSCDGDGEI 743 (913)
Q Consensus 665 ~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~-~~~ll~sgs~Dg~I 743 (913)
......|..|.+.|..|.|+..|..|++||.|..|.+||.......+....+|...|.-..|.|. +..-|++++.||.|
T Consensus 132 ~~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqv 211 (559)
T KOG1334|consen 132 LRLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQV 211 (559)
T ss_pred hhhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCce
Confidence 34556788999999999999999999999999999999999866667777789999988888885 34456799999999
Q ss_pred EEEEcCCCe------eeEEeeCCceEEEEecCCC-EEEEEEcCCeEEEEECCCCeEEEEe---cCCCC---CeEEEEEcC
Q 002519 744 RYWSINNGS------CTRVFKGGTAQMRFQPHLG-RYLAAAAENVVSILDAETQACRLSL---QGHTK---PIDSVCWDP 810 (913)
Q Consensus 744 ~iwdl~~~~------~~~~~~~~~~~v~~s~~~~-~ll~~~~dg~I~i~D~~t~~~~~~l---~~h~~---~V~sl~~sp 810 (913)
++=.+.... .+....+++..++..|+.. .|++++.|+.+.-+|++...+...+ +.+.. ....|+..|
T Consensus 212 r~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P 291 (559)
T KOG1334|consen 212 RVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDP 291 (559)
T ss_pred eeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCC
Confidence 998775432 3334567788888888774 5777888999999999987433222 23333 577889999
Q ss_pred CCC-EEEEEeCC-eEEEEECCCCCCC---ceEEE------eecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC--C-
Q 002519 811 SGE-LLASVSED-SVRVWTVGSGSEG---ECVHE------LSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSE--N- 876 (913)
Q Consensus 811 dg~-~l~s~s~d-~I~vwdl~~~~~~---~~i~~------~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~--~- 876 (913)
... .+++++.| .++|||.+...+. ..+.. .......|++++|+.++.-++++..|..|++|.-.- +
T Consensus 292 ~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~ 371 (559)
T KOG1334|consen 292 RNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGS 371 (559)
T ss_pred CCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCC
Confidence 666 88888888 9999998764321 11111 112345689999999999999999999999995432 2
Q ss_pred ---------cEE--EEcccCC--CeEEEEE-eCCCCEEEEEeCCCcEEEeC
Q 002519 877 ---------KTM--TLTAHEG--LIAALAV-STETGYVASASHDKFVKLWK 913 (913)
Q Consensus 877 ---------~~~--~~~~h~~--~V~~l~~-spdg~~Lasgs~DG~I~IWd 913 (913)
..+ .+++|.. .|.++-| -|...||++|++-|.|.|||
T Consensus 372 ~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~ 422 (559)
T KOG1334|consen 372 EPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWD 422 (559)
T ss_pred CCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEe
Confidence 111 3667754 4666654 67889999999999999997
No 235
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.45 E-value=2.6e-11 Score=139.92 Aligned_cols=231 Identities=19% Similarity=0.215 Sum_probs=158.0
Q ss_pred CCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCC---CeEEEEEcCCCCceeEEeccCCCCeEEEEEcCCC
Q 002519 654 DKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFD---KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNK 730 (913)
Q Consensus 654 Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D---g~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~ 730 (913)
...|.++|.+.. ....+..+...+.+.+|+||+++|+.++.+ ..|++||+.++ .. ..+..+...+.+++|+|++
T Consensus 169 ~~~l~~~d~~g~-~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g-~~-~~~~~~~~~~~~~~~spDg 245 (417)
T TIGR02800 169 RYELQVADYDGA-NPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATG-QR-EKVASFPGMNGAPAFSPDG 245 (417)
T ss_pred cceEEEEcCCCC-CCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCC-CE-EEeecCCCCccceEECCCC
Confidence 346788887643 345565677789999999999999988754 47999999873 22 2333455667789999999
Q ss_pred CeEEEEEeCCC--cEEEEEcCCCeeeEEeeC--CceEEEEecCCCEEEEEEcC-C--eEEEEECCCCeEEEEecCCCCCe
Q 002519 731 DDLICSCDGDG--EIRYWSINNGSCTRVFKG--GTAQMRFQPHLGRYLAAAAE-N--VVSILDAETQACRLSLQGHTKPI 803 (913)
Q Consensus 731 ~~ll~sgs~Dg--~I~iwdl~~~~~~~~~~~--~~~~v~~s~~~~~ll~~~~d-g--~I~i~D~~t~~~~~~l~~h~~~V 803 (913)
+.++++.+.++ .|++||+.++........ ......|++++..+++++.. + .|+++|+.+++.. .+..+...+
T Consensus 246 ~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~~~~ 324 (417)
T TIGR02800 246 SKLAVSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFRGGYN 324 (417)
T ss_pred CEEEEEECCCCCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCCCc
Confidence 98887776555 588999987765433322 23457899999988877653 2 6888898877643 333355667
Q ss_pred EEEEEcCCCCEEEEEeCC----eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEEEEcCC---eEEEEECCCC
Q 002519 804 DSVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ---SLELWNMSEN 876 (913)
Q Consensus 804 ~sl~~spdg~~l~s~s~d----~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg---~I~iwd~~~~ 876 (913)
..++|+|+|++|+.++.+ .|.+||+.++.. ..+.. ........|+|++++|+..+.++ .+++++....
T Consensus 325 ~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~----~~l~~-~~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~g~ 399 (417)
T TIGR02800 325 ASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE----RVLTD-TGLDESPSFAPNGRMILYATTRGGRGVLGLVSTDGR 399 (417)
T ss_pred cCeEECCCCCEEEEEEccCCceEEEEEeCCCCCe----EEccC-CCCCCCceECCCCCEEEEEEeCCCcEEEEEEECCCc
Confidence 788999999988877654 688888876421 12221 12234568999999998888764 5666676555
Q ss_pred cEEEEcccCCCeEEEEE
Q 002519 877 KTMTLTAHEGLIAALAV 893 (913)
Q Consensus 877 ~~~~~~~h~~~V~~l~~ 893 (913)
....+..+.+.+..++|
T Consensus 400 ~~~~~~~~~g~~~~~~w 416 (417)
T TIGR02800 400 FRARLPLGNGDVREPAW 416 (417)
T ss_pred eeeECCCCCCCcCCCCC
Confidence 44444444555555544
No 236
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.45 E-value=6.9e-12 Score=137.44 Aligned_cols=238 Identities=17% Similarity=0.212 Sum_probs=171.8
Q ss_pred cCCCCeEEEEECCCCCEE-EEEeCCCeEEEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCC
Q 002519 673 EHSSLITDVRFSPSMPRL-ATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG 751 (913)
Q Consensus 673 ~h~~~V~~l~fspdg~~L-asgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~ 751 (913)
.|....+.|..+|||.|| ++|.+.-.|++||+.+ ..++.-......|..+....|+-.-+|.-..|.+|-+..--..
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlan--LSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~ 126 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLAN--LSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGR 126 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEccc--ceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCe
Confidence 477788999999999976 5666788999999986 2233333333444444333332222233445777766543322
Q ss_pred eeeEEeeCCceEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCC
Q 002519 752 SCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGS 830 (913)
Q Consensus 752 ~~~~~~~~~~~~v~~s~~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~ 830 (913)
.....++.....++++.....+++++....|+-++++.|..+..+......+++|..++...+|++|+.+ .|.+||.++
T Consensus 127 hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ 206 (703)
T KOG2321|consen 127 HYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRD 206 (703)
T ss_pred eeeeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchh
Confidence 2222333444567777666778888888999999999999999888888999999999999999999988 999999987
Q ss_pred CCCCceEEE---eecCCC-----ceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEcccCC--CeEEEEEeCC--CC
Q 002519 831 GSEGECVHE---LSCNGN-----KFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEG--LIAALAVSTE--TG 898 (913)
Q Consensus 831 ~~~~~~i~~---~~~~~~-----~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~h~~--~V~~l~~spd--g~ 898 (913)
......+.. +..+.+ .|+++.|+.+|-.+++|+.+|.|.|||++..+.+.+..|.. +|..+.|.+. ..
T Consensus 207 ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~ 286 (703)
T KOG2321|consen 207 KSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQN 286 (703)
T ss_pred hhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCc
Confidence 643333221 122222 38999999999999999999999999999999998887765 6888888665 34
Q ss_pred EEEEEeCCCcEEEeC
Q 002519 899 YVASASHDKFVKLWK 913 (913)
Q Consensus 899 ~Lasgs~DG~I~IWd 913 (913)
.|+|. +...++|||
T Consensus 287 ~v~S~-Dk~~~kiWd 300 (703)
T KOG2321|consen 287 KVVSM-DKRILKIWD 300 (703)
T ss_pred eEEec-chHHhhhcc
Confidence 56554 456789997
No 237
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.44 E-value=3.2e-11 Score=139.72 Aligned_cols=201 Identities=15% Similarity=0.209 Sum_probs=144.6
Q ss_pred eEEEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeC--CCcEEEEEcCCCeeeE--EeeCCceEEEEecCCCEE
Q 002519 698 TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDG--DGEIRYWSINNGSCTR--VFKGGTAQMRFQPHLGRY 773 (913)
Q Consensus 698 ~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~--Dg~I~iwdl~~~~~~~--~~~~~~~~v~~s~~~~~l 773 (913)
.|.+||.+ +...+.+..+...+.+.+|+|||+.++++... +..|++||+.+++... .+.+......|+|++..+
T Consensus 183 ~l~~~d~d--g~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~l 260 (435)
T PRK05137 183 RLAIMDQD--GANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKV 260 (435)
T ss_pred EEEEECCC--CCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEE
Confidence 68888875 44456667788899999999999987765532 4689999999886543 344556678999999987
Q ss_pred EEEE-cCC--eEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC----eEEEEECCCCCCCceEEEeecCCCc
Q 002519 774 LAAA-AEN--VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNK 846 (913)
Q Consensus 774 l~~~-~dg--~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d----~I~vwdl~~~~~~~~i~~~~~~~~~ 846 (913)
++.. .++ .|++||+.++... .+..+.......+|+|||+.|+..+.. .|++||+..+. ...+......
T Consensus 261 a~~~~~~g~~~Iy~~d~~~~~~~-~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~----~~~lt~~~~~ 335 (435)
T PRK05137 261 VMSLSQGGNTDIYTMDLRSGTTT-RLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSN----PRRISFGGGR 335 (435)
T ss_pred EEEEecCCCceEEEEECCCCceE-EccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCC----eEEeecCCCc
Confidence 6554 344 5888899887654 455566667789999999988776643 68888876542 2223223445
Q ss_pred eEEEEEeCCCCEEEEEEcCC---eEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEeCC
Q 002519 847 FHSCVFHPTYPSLLVIGCYQ---SLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHD 906 (913)
Q Consensus 847 i~~l~~sp~g~~l~s~s~dg---~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~D 906 (913)
+....|+|+|++|+....++ .|.+||+.++....+. ....+..+.|+|||++|+..+.+
T Consensus 336 ~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~~lt-~~~~~~~p~~spDG~~i~~~~~~ 397 (435)
T PRK05137 336 YSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGERILT-SGFLVEGPTWAPNGRVIMFFRQT 397 (435)
T ss_pred ccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceEecc-CCCCCCCCeECCCCCEEEEEEcc
Confidence 66788999999998877543 6888998766554333 33457788999999988776543
No 238
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.43 E-value=7.4e-11 Score=136.65 Aligned_cols=232 Identities=15% Similarity=0.100 Sum_probs=159.6
Q ss_pred cEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCC---CeEEEEEcCCCCceeEEeccCCCCeEEEEEcCCCCe
Q 002519 656 KAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFD---KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDD 732 (913)
Q Consensus 656 ~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D---g~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ 732 (913)
.|.++|.+.+. ...+..+...+...+|+|||+.|+..+.+ ..|.+||+.+ +.. ..+....+.+....|+|+|+.
T Consensus 180 ~l~~~d~~g~~-~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~-g~~-~~l~~~~g~~~~~~~SpDG~~ 256 (430)
T PRK00178 180 TLQRSDYDGAR-AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDT-GRR-EQITNFEGLNGAPAWSPDGSK 256 (430)
T ss_pred EEEEECCCCCC-ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCC-CCE-EEccCCCCCcCCeEECCCCCE
Confidence 47777877544 45566677789999999999999887654 3689999986 332 233333444567899999998
Q ss_pred EEEEEeCCC--cEEEEEcCCCeeeEEee--CCceEEEEecCCCEEEEEEc-C--CeEEEEECCCCeEEEEecCCCCCeEE
Q 002519 733 LICSCDGDG--EIRYWSINNGSCTRVFK--GGTAQMRFQPHLGRYLAAAA-E--NVVSILDAETQACRLSLQGHTKPIDS 805 (913)
Q Consensus 733 ll~sgs~Dg--~I~iwdl~~~~~~~~~~--~~~~~v~~s~~~~~ll~~~~-d--g~I~i~D~~t~~~~~~l~~h~~~V~s 805 (913)
++++.+.+| .|++||+.+++...... .......|+|++..++..+. + ..|+++|+.+++...... .......
T Consensus 257 la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~-~~~~~~~ 335 (430)
T PRK00178 257 LAFVLSKDGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTF-VGNYNAR 335 (430)
T ss_pred EEEEEccCCCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec-CCCCccc
Confidence 887776665 58888999876554332 23455789999998887765 3 368888888876443222 2233446
Q ss_pred EEEcCCCCEEEEEeCC----eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEEEEcC---CeEEEEECCCCcE
Q 002519 806 VCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY---QSLELWNMSENKT 878 (913)
Q Consensus 806 l~~spdg~~l~s~s~d----~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~d---g~I~iwd~~~~~~ 878 (913)
..|+|+|++|+..+.+ .|.+||+.++.. ..+ .. ........|+|+|+.|+..+.+ ..|+++++.....
T Consensus 336 ~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~-~~l---t~-~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~~~ 410 (430)
T PRK00178 336 PRLSADGKTLVMVHRQDGNFHVAAQDLQRGSV-RIL---TD-TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGRVR 410 (430)
T ss_pred eEECCCCCEEEEEEccCCceEEEEEECCCCCE-EEc---cC-CCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCce
Confidence 7899999988776643 588899877532 222 21 1122356899999999888765 3688888876666
Q ss_pred EEEcccCCCeEEEEEeCC
Q 002519 879 MTLTAHEGLIAALAVSTE 896 (913)
Q Consensus 879 ~~~~~h~~~V~~l~~spd 896 (913)
..+..+.+.+...+|+|-
T Consensus 411 ~~l~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 411 LPLPTAQGEVREPSWSPY 428 (430)
T ss_pred EECcCCCCCcCCCccCCC
Confidence 566666677788888763
No 239
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.43 E-value=5.6e-11 Score=129.93 Aligned_cols=267 Identities=14% Similarity=0.188 Sum_probs=180.6
Q ss_pred CEEEEEEecCCCEEEEEeC-----------CCcEEEEECCCCceeeEeccC--CCCeE-EEEECCCCCEEEEEeCCCeEE
Q 002519 635 KVICCHFSSDGKLLATGGH-----------DKKAVLWHTDTLKSKTNLEEH--SSLIT-DVRFSPSMPRLATSSFDKTVR 700 (913)
Q Consensus 635 ~V~~l~fspdg~~Lasgs~-----------Dg~V~vwd~~~~~~~~~l~~h--~~~V~-~l~fspdg~~Lasgs~Dg~V~ 700 (913)
.|.-+.|||+.+||+|-+. ...++|||+.+|...+.|... ...++ -+.||.|++++|.-..| .|.
T Consensus 251 ~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~-sis 329 (698)
T KOG2314|consen 251 GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN-SIS 329 (698)
T ss_pred CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccc-eEE
Confidence 5888999999999998653 257999999999999888763 22233 36899999999988775 489
Q ss_pred EEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEe-C----CCcEEEEEcCCCeeeEEee---CCceEEEEecCCCE
Q 002519 701 VWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCD-G----DGEIRYWSINNGSCTRVFK---GGTAQMRFQPHLGR 772 (913)
Q Consensus 701 Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs-~----Dg~I~iwdl~~~~~~~~~~---~~~~~v~~s~~~~~ 772 (913)
||+..+ -..+..-.-.-..|....|+|.+. +||--. . -..+.+..+.++..+++.. .....+.|...|.+
T Consensus 330 IyEtps-f~lld~Kslki~gIr~FswsP~~~-llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdy 407 (698)
T KOG2314|consen 330 IYETPS-FMLLDKKSLKISGIRDFSWSPTSN-LLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDY 407 (698)
T ss_pred EEecCc-eeeecccccCCccccCcccCCCcc-eEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcE
Confidence 998865 222222122345688889999855 443221 1 2456677777776665533 23344667777666
Q ss_pred EEEEEc-------C---CeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC----eEEEEECC-CCCCCceE
Q 002519 773 YLAAAA-------E---NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED----SVRVWTVG-SGSEGECV 837 (913)
Q Consensus 773 ll~~~~-------d---g~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d----~I~vwdl~-~~~~~~~i 837 (913)
|.+-.. . ..+.|+.++........-.-...|...+|.|.|+.+++-+.. ++.+|.+. +......+
T Consensus 408 LcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lV 487 (698)
T KOG2314|consen 408 LCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLV 487 (698)
T ss_pred EEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhh
Confidence 655332 1 145566666554333333345778999999999976665543 79999998 44555566
Q ss_pred EEeecCCCceEEEEEeCCCCEEEEEEc---CCeEEEEECCCCcEE--EEcccCCCeEEEEEeCCCCEEEEEeCCC
Q 002519 838 HELSCNGNKFHSCVFHPTYPSLLVIGC---YQSLELWNMSENKTM--TLTAHEGLIAALAVSTETGYVASASHDK 907 (913)
Q Consensus 838 ~~~~~~~~~i~~l~~sp~g~~l~s~s~---dg~I~iwd~~~~~~~--~~~~h~~~V~~l~~spdg~~Lasgs~DG 907 (913)
..+. ....+.+.|+|.|++++++.- .|.+.+||..-..+. ....| ...+.+.|.|.|+|+++++.-+
T Consensus 488 k~~d--k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh-~~at~veWDPtGRYvvT~ss~w 559 (698)
T KOG2314|consen 488 KELD--KKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEH-FAATEVEWDPTGRYVVTSSSSW 559 (698)
T ss_pred hhhc--ccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccc-cccccceECCCCCEEEEeeehh
Confidence 6554 356788999999999888754 579999999853333 33333 3467789999999999998644
No 240
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.43 E-value=3.6e-12 Score=127.75 Aligned_cols=153 Identities=20% Similarity=0.276 Sum_probs=121.6
Q ss_pred CCCeEEEEECCC-CC--EEEEEeCCCeEEEEEcCCCC---------ceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCc
Q 002519 675 SSLITDVRFSPS-MP--RLATSSFDKTVRVWDADNPG---------YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGE 742 (913)
Q Consensus 675 ~~~V~~l~fspd-g~--~Lasgs~Dg~V~Iwdl~~~~---------~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~ 742 (913)
.+.+.|..|..+ ++ +|+.|-++|.|.+||+.++. +.+.....|..+|.++.|.+...+=+ +|+.+..
T Consensus 150 lgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGi-sgga~dk 228 (323)
T KOG0322|consen 150 LGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGI-SGGADDK 228 (323)
T ss_pred cCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCc-CCCcccc
Confidence 345666665432 33 45677779999999999842 22334457999999999987544334 7788888
Q ss_pred EEEEEcCCC--e-----eeEEeeCCceEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEE
Q 002519 743 IRYWSINNG--S-----CTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELL 815 (913)
Q Consensus 743 I~iwdl~~~--~-----~~~~~~~~~~~v~~s~~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l 815 (913)
+..|++... . .+..-..++..+++.||++.+++++.|++|+||..++..++..++-|...|.+++|+|+..++
T Consensus 229 l~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lm 308 (323)
T KOG0322|consen 229 LVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELM 308 (323)
T ss_pred ceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchh
Confidence 999988653 1 222234577889999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCC-eEEEEEC
Q 002519 816 ASVSED-SVRVWTV 828 (913)
Q Consensus 816 ~s~s~d-~I~vwdl 828 (913)
++++.| .|.+|++
T Consensus 309 AaaskD~rISLWkL 322 (323)
T KOG0322|consen 309 AAASKDARISLWKL 322 (323)
T ss_pred hhccCCceEEeeec
Confidence 999999 9999986
No 241
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.42 E-value=9.1e-12 Score=135.68 Aligned_cols=167 Identities=16% Similarity=0.260 Sum_probs=129.4
Q ss_pred cCCCEEEEEeCCCcEEEEECCCCceeeEec----cCCCCeEEEEECCCCC-EEEEEeCCCeEEEEEcCCCC---------
Q 002519 643 SDGKLLATGGHDKKAVLWHTDTLKSKTNLE----EHSSLITDVRFSPSMP-RLATSSFDKTVRVWDADNPG--------- 708 (913)
Q Consensus 643 pdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~----~h~~~V~~l~fspdg~-~Lasgs~Dg~V~Iwdl~~~~--------- 708 (913)
+++--|+.|-..|.|.+.|....+..+.+. -....|+||.|-|.+. .++++-.+|.+++||.+...
T Consensus 183 ~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~ 262 (636)
T KOG2394|consen 183 PKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQA 262 (636)
T ss_pred CCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccc
Confidence 466678888888999998876532222121 1347899999998655 55566679999999774210
Q ss_pred ------c------------eeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEE---eeCCceEEEEe
Q 002519 709 ------Y------------SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV---FKGGTAQMRFQ 767 (913)
Q Consensus 709 ------~------------~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~---~~~~~~~v~~s 767 (913)
. ++..+.--.+.|..++|+|||.+ |++.+.||.+||||..+.+++.. +-++..+++|+
T Consensus 263 ~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~-LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWS 341 (636)
T KOG2394|consen 263 LKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKY-LATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWS 341 (636)
T ss_pred cCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCce-EEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEc
Confidence 0 11111123457889999998875 55889999999999998876544 45788999999
Q ss_pred cCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcC
Q 002519 768 PHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDP 810 (913)
Q Consensus 768 ~~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~sp 810 (913)
||+++|++++.|..|.||.+...+.+..-.+|..+|..|+|+|
T Consensus 342 PDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 342 PDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred CCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence 9999999999999999999999999999999999999999997
No 242
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.41 E-value=4e-10 Score=123.70 Aligned_cols=256 Identities=10% Similarity=0.075 Sum_probs=169.4
Q ss_pred CcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeC----------CCeEEEEEcCCCCceeEEeccCC------
Q 002519 655 KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF----------DKTVRVWDADNPGYSLRTFMGHS------ 718 (913)
Q Consensus 655 g~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~----------Dg~V~Iwdl~~~~~~~~~~~~h~------ 718 (913)
++|.|.|.++++.+..+..-..+-. + ++||++.|++++. +..|.|||+.+ .+.+..+.-..
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~~-~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t-~~~~~~i~~p~~p~~~~ 103 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPNP-V-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQT-HLPIADIELPEGPRFLV 103 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCce-e-ECCCCCEEEEEeccccccccCCCCCEEEEEECcc-CcEEeEEccCCCchhhc
Confidence 8999999999999998876544433 4 9999998877765 78899999998 55565554211
Q ss_pred -CCeEEEEEcCCCCeEEEEEeC-CCcEEEEEcCCCeeeEEeeCCceEEEEecCCCEEEEEEcCCeEEEEECCC-CeE-EE
Q 002519 719 -ASVMSLDFHPNKDDLICSCDG-DGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAET-QAC-RL 794 (913)
Q Consensus 719 -~~V~sl~fsp~~~~ll~sgs~-Dg~I~iwdl~~~~~~~~~~~~~~~v~~s~~~~~ll~~~~dg~I~i~D~~t-~~~-~~ 794 (913)
.....+.++|||+.++++--. +..|.++|+.+++.+..+..+.....+-.....+.+.|.||....+.+.+ ++. ..
T Consensus 104 ~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~ 183 (352)
T TIGR02658 104 GTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIK 183 (352)
T ss_pred cCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEe
Confidence 223468999999988866534 89999999999999988775443333322223333444555444433222 221 11
Q ss_pred E---ecCCCCCeE-EEEEcC-CCCEEEEEeCCeEEEEECCCCCC--CceEEEeec-------CCCceEEEEEeCCCCEEE
Q 002519 795 S---LQGHTKPID-SVCWDP-SGELLASVSEDSVRVWTVGSGSE--GECVHELSC-------NGNKFHSCVFHPTYPSLL 860 (913)
Q Consensus 795 ~---l~~h~~~V~-sl~~sp-dg~~l~s~s~d~I~vwdl~~~~~--~~~i~~~~~-------~~~~i~~l~~sp~g~~l~ 860 (913)
. +.....++. .-.|.+ +|+++++..+++|.+.|+..... ...+..+.. ....+.-+++++++++++
T Consensus 184 ~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~ly 263 (352)
T TIGR02658 184 PTEVFHPEDEYLINHPAYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIY 263 (352)
T ss_pred eeeeecCCccccccCCceEcCCCcEEEEecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEE
Confidence 1 111001110 013455 88888888888999999754321 112222111 122334499999999998
Q ss_pred EEEc----------CCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCC-EEEEEe-CCCcEEEeC
Q 002519 861 VIGC----------YQSLELWNMSENKTMTLTAHEGLIAALAVSTETG-YVASAS-HDKFVKLWK 913 (913)
Q Consensus 861 s~s~----------dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~-~Lasgs-~DG~I~IWd 913 (913)
+... .+.|.++|..+++.+....-...+..+++++|++ +|++.+ .++.|.|+|
T Consensus 264 V~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD 328 (352)
T TIGR02658 264 LLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGDKTLYIFD 328 (352)
T ss_pred EEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCcEEEEE
Confidence 8532 2489999999999997666677999999999999 877666 578888875
No 243
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.41 E-value=7.6e-11 Score=136.52 Aligned_cols=232 Identities=15% Similarity=0.136 Sum_probs=155.5
Q ss_pred cEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCC-C--eEEEEEcCCCCceeEEeccCCCCeEEEEEcCCCCe
Q 002519 656 KAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFD-K--TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDD 732 (913)
Q Consensus 656 ~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D-g--~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ 732 (913)
.|.++|.+... .+.+..+...+.+..|+|||+.|+..+.+ + .|++||+.++ .. ..+...........|+||++.
T Consensus 199 ~l~i~d~dG~~-~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg-~~-~~lt~~~g~~~~~~wSPDG~~ 275 (448)
T PRK04792 199 QLMIADYDGYN-EQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQ-VR-EKVTSFPGINGAPRFSPDGKK 275 (448)
T ss_pred EEEEEeCCCCC-ceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCC-Ce-EEecCCCCCcCCeeECCCCCE
Confidence 57777876543 34555667789999999999999877653 3 5888898863 32 222222333456899999999
Q ss_pred EEEEEeCCCc--EEEEEcCCCeeeEEeeC--CceEEEEecCCCEEEEEEc-C--CeEEEEECCCCeEEEEecCCCCCeEE
Q 002519 733 LICSCDGDGE--IRYWSINNGSCTRVFKG--GTAQMRFQPHLGRYLAAAA-E--NVVSILDAETQACRLSLQGHTKPIDS 805 (913)
Q Consensus 733 ll~sgs~Dg~--I~iwdl~~~~~~~~~~~--~~~~v~~s~~~~~ll~~~~-d--g~I~i~D~~t~~~~~~l~~h~~~V~s 805 (913)
++++.+.+|. |++||+.+++....... ......|+|++..++..+. + ..|+++|+.+++..... ........
T Consensus 276 La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt-~~g~~~~~ 354 (448)
T PRK04792 276 LALVLSKDGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLT-FEGEQNLG 354 (448)
T ss_pred EEEEEeCCCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEe-cCCCCCcC
Confidence 8888777775 78888887765443322 3456889999998877765 3 36777888877644322 12233456
Q ss_pred EEEcCCCCEEEEEeCC----eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEEEEcCC---eEEEEECCCCcE
Q 002519 806 VCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ---SLELWNMSENKT 878 (913)
Q Consensus 806 l~~spdg~~l~s~s~d----~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg---~I~iwd~~~~~~ 878 (913)
.+|+|||++|+..+.+ .|.++|+.++.. .. +... .......|+|+|+.|+..+.++ .|++++......
T Consensus 355 ~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~-~~---lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~~~ 429 (448)
T PRK04792 355 GSITPDGRSMIMVNRTNGKFNIARQDLETGAM-QV---LTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDGRFK 429 (448)
T ss_pred eeECCCCCEEEEEEecCCceEEEEEECCCCCe-EE---ccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECCCCce
Confidence 7999999988776543 466677766532 11 2211 1223457999999988877653 478888866655
Q ss_pred EEEcccCCCeEEEEEeCC
Q 002519 879 MTLTAHEGLIAALAVSTE 896 (913)
Q Consensus 879 ~~~~~h~~~V~~l~~spd 896 (913)
..+..+.+.+...+|+|-
T Consensus 430 ~~l~~~~g~~~~p~Wsp~ 447 (448)
T PRK04792 430 ARLPAGQGEVKSPAWSPF 447 (448)
T ss_pred EECcCCCCCcCCCccCCC
Confidence 566666777888888873
No 244
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.40 E-value=7.6e-10 Score=116.83 Aligned_cols=263 Identities=16% Similarity=0.161 Sum_probs=185.8
Q ss_pred cCCCCEEEEEEecCCCEEEEEeCC---CcEEEEECCC--Cceee--EeccCCCCeEEEEECCCCCEEEEEeC-CCeEEEE
Q 002519 631 ASTSKVICCHFSSDGKLLATGGHD---KKAVLWHTDT--LKSKT--NLEEHSSLITDVRFSPSMPRLATSSF-DKTVRVW 702 (913)
Q Consensus 631 ~H~~~V~~l~fspdg~~Lasgs~D---g~V~vwd~~~--~~~~~--~l~~h~~~V~~l~fspdg~~Lasgs~-Dg~V~Iw 702 (913)
.+.+.++-|+|+++.++|.++..+ |.|..|.++. |+... ........-+.|++++++++|+++.. -|.|.++
T Consensus 37 ~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~ 116 (346)
T COG2706 37 AELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVY 116 (346)
T ss_pred cccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEE
Confidence 466789999999999999887654 7788887774 44322 22223334488999999999999987 6899999
Q ss_pred EcCCCCceeE--EeccCCCC----------eEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEe----e--CCceEE
Q 002519 703 DADNPGYSLR--TFMGHSAS----------VMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF----K--GGTAQM 764 (913)
Q Consensus 703 dl~~~~~~~~--~~~~h~~~----------V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~----~--~~~~~v 764 (913)
-+...+.... ....|.+. +.+..|.|+++.++++.-.-..|.+|++..++....- + .+...+
T Consensus 117 p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi 196 (346)
T COG2706 117 PLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHI 196 (346)
T ss_pred EcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceE
Confidence 9976554322 22235444 8889999999877755555678999999987654332 1 356779
Q ss_pred EEecCCCEEEEEEc-CCeEEEEECCCC-eEEEEecC---------CCCCeEEEEEcCCCCEEEEEeCC--eEEEEECCCC
Q 002519 765 RFQPHLGRYLAAAA-ENVVSILDAETQ-ACRLSLQG---------HTKPIDSVCWDPSGELLASVSED--SVRVWTVGSG 831 (913)
Q Consensus 765 ~~s~~~~~ll~~~~-dg~I~i~D~~t~-~~~~~l~~---------h~~~V~sl~~spdg~~l~s~s~d--~I~vwdl~~~ 831 (913)
.|+|+++...+.+. +++|.+|..... ..+..+.. -..+.-.|.+++||++|+++... .|.+|.+...
T Consensus 197 ~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~ 276 (346)
T COG2706 197 VFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPD 276 (346)
T ss_pred EEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCC
Confidence 99999998877776 899999988773 22222221 23456788999999999999877 8999988654
Q ss_pred C-CCceEEEeecCCCceEEEEEeCCCCEEEEEEcCC-eEEEEEC--CCCcEEEEc--ccCCCeEEEEE
Q 002519 832 S-EGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ-SLELWNM--SENKTMTLT--AHEGLIAALAV 893 (913)
Q Consensus 832 ~-~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg-~I~iwd~--~~~~~~~~~--~h~~~V~~l~~ 893 (913)
. ....+.....++..-..+.|++++++|+++..++ .|.+|.+ .+|++..+. .......||.|
T Consensus 277 ~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~~~p~Pvcv~f 344 (346)
T COG2706 277 GGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTLLGRYAVVPEPVCVKF 344 (346)
T ss_pred CCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEecccccCCCCcEEEEE
Confidence 2 3444455555566678899999999999998875 7888765 455554222 23344555555
No 245
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.40 E-value=3e-11 Score=125.99 Aligned_cols=226 Identities=17% Similarity=0.234 Sum_probs=140.4
Q ss_pred eecCCCCEEEEEEecCCCEEEEEeC-CCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Q 002519 629 VRASTSKVICCHFSSDGKLLATGGH-DKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP 707 (913)
Q Consensus 629 l~~H~~~V~~l~fspdg~~Lasgs~-Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~ 707 (913)
-.+| ..|+++.|.+||..|++++. |..|.|||.+++..+.......+.++-+.|+||+.+|+++..|+..++|.....
T Consensus 192 ~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~ 270 (445)
T KOG2139|consen 192 DPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQS 270 (445)
T ss_pred CCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhccc
Confidence 3455 78999999999999999885 568999999998877766566778999999999999999999999999976542
Q ss_pred CceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeCCceEEEEecCCCEEEEEEcCCeEEEEEC
Q 002519 708 GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDA 787 (913)
Q Consensus 708 ~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~s~~~~~ll~~~~dg~I~i~D~ 787 (913)
....+-. -..+.|...+|+|+|..+|++++..-.|+-........+ +.+ .++......+-|+
T Consensus 271 wt~erw~-lgsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~--~~~---------------~~~~k~~lliaDL 332 (445)
T KOG2139|consen 271 WTKERWI-LGSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSV--FLR---------------PQSIKRVLLIADL 332 (445)
T ss_pred ceeccee-ccCCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCcc--ccC---------------cccceeeeeeccc
Confidence 3333333 344589999999999999988875554443322211111 100 0011111222233
Q ss_pred CCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC---------eEEEEECCCCCCCceEEEeecCCCceEEEEEeC---C
Q 002519 788 ETQACRLSLQGHTKPIDSVCWDPSGELLASVSED---------SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHP---T 855 (913)
Q Consensus 788 ~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d---------~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp---~ 855 (913)
..-....--+--.+.+.+++|+|.|++|++.-.+ .|.+||.+..........-...+..-..++|+| +
T Consensus 333 ~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~ 412 (445)
T KOG2139|consen 333 QEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNE 412 (445)
T ss_pred hhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccC
Confidence 2111000001123678899999999999987655 255677654322111110011112233445554 4
Q ss_pred CCEEEEEEcCCeEEEEEC
Q 002519 856 YPSLLVIGCYQSLELWNM 873 (913)
Q Consensus 856 g~~l~s~s~dg~I~iwd~ 873 (913)
+.+|.++-..|.|.-|++
T Consensus 413 g~lLsiaWsTGriq~ypl 430 (445)
T KOG2139|consen 413 GRLLSIAWSTGRIQRYPL 430 (445)
T ss_pred CcEEEEEeccCceEeeee
Confidence 555666666677666654
No 246
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.39 E-value=7.1e-13 Score=141.91 Aligned_cols=228 Identities=15% Similarity=0.187 Sum_probs=182.0
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeee
Q 002519 675 SSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT 754 (913)
Q Consensus 675 ~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~ 754 (913)
.-.-..+.|+.+|+.|+.|+..|.|..+|..+ +.....+. -...|.++.|..+.. +| +..-...++|||-. |..+
T Consensus 129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t-~~L~~Ei~-v~Etv~Dv~~LHneq-~~-AVAQK~y~yvYD~~-GtEl 203 (545)
T KOG1272|consen 129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVT-KKLHFEIN-VMETVRDVTFLHNEQ-FF-AVAQKKYVYVYDNN-GTEL 203 (545)
T ss_pred ccCCeeeeecCCccEEEecCCccceeeeeccc-ceeeeeee-hhhhhhhhhhhcchH-HH-HhhhhceEEEecCC-CcEE
Confidence 34457889999999999999999999999998 44444443 456788999987644 55 34457889999965 5555
Q ss_pred EEee--CCceEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCC
Q 002519 755 RVFK--GGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSG 831 (913)
Q Consensus 755 ~~~~--~~~~~v~~s~~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~ 831 (913)
..++ ..+..+.|.|..-.+++++..|.++.-|+.+|+.+..+..-.+.+..++-+|-+.++-+|..+ +|.+|.-.+.
T Consensus 204 HClk~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~sk 283 (545)
T KOG1272|consen 204 HCLKRHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSK 283 (545)
T ss_pred eehhhcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCc
Confidence 5554 356778899987777777888999999999999999998888899999999998888888888 9999998765
Q ss_pred CCCceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEeCCCcEE
Q 002519 832 SEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVK 910 (913)
Q Consensus 832 ~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~Lasgs~DG~I~ 910 (913)
..+..+-+|.++|.++++.++|.++++++.|..|+|||++....+ ++.. ......++||..| +|| ++....|.
T Consensus 284 ---ePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sqkg-lLA-~~~G~~v~ 357 (545)
T KOG1272|consen 284 ---EPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKG-LLA-LSYGDHVQ 357 (545)
T ss_pred ---chHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec-CCCcccccccccc-cee-eecCCeee
Confidence 666777889999999999999999999999999999999987755 3333 5567778887766 333 44455788
Q ss_pred EeC
Q 002519 911 LWK 913 (913)
Q Consensus 911 IWd 913 (913)
||+
T Consensus 358 iw~ 360 (545)
T KOG1272|consen 358 IWK 360 (545)
T ss_pred eeh
Confidence 985
No 247
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.39 E-value=1.2e-11 Score=144.77 Aligned_cols=264 Identities=17% Similarity=0.219 Sum_probs=184.6
Q ss_pred CCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEec------cCC--CCeEEEEECCCCCEEEEEeCCCeEEEEE
Q 002519 632 STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE------EHS--SLITDVRFSPSMPRLATSSFDKTVRVWD 703 (913)
Q Consensus 632 H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~------~h~--~~V~~l~fspdg~~Lasgs~Dg~V~Iwd 703 (913)
|-+.+.+..+-. +||++|. .-.|.+||+..+..+..+. .|. +.+. -.+.+++++..-+.+.+=+
T Consensus 6 ~~~~l~~~~~~~--~~llag~-gp~i~~yd~~s~~li~~~~~~~~~~~H~~e~~~~-----l~~~~~v~~~~~~~v~~~~ 77 (967)
T KOG0974|consen 6 SLGPLNLPQLVS--DYLLAGS-GPEILVYDLSSGCLIRHLIQSKILEVHRGEGKVK-----LLSGKIVTCAKSDEVYVKE 77 (967)
T ss_pred ccccccchhhcc--ceeeecC-CCceEEeeCCchhHhhhhhhhcccccccccccce-----eccceEEEEEeecceeecc
Confidence 344566666544 4666654 4579999999876655443 330 0010 1233555555444343333
Q ss_pred cCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeCCceE-------EEEecCCCEEEEE
Q 002519 704 ADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQ-------MRFQPHLGRYLAA 776 (913)
Q Consensus 704 l~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~-------v~~s~~~~~ll~~ 776 (913)
... .....+ .+.|....+.-+.. .++.+..+..+.+||...+...........+ +-++++.-+++++
T Consensus 78 ~~~--~~~~~~---s~wi~g~~l~~e~k-~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~g 151 (967)
T KOG0974|consen 78 ASN--QIIERF---SDWIFGAKLFEENK-KIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASG 151 (967)
T ss_pred hhh--hhhhhc---cccccccchhhhcc-eEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEec
Confidence 221 112222 23333344444444 4456677899999999888766655443322 2234454567777
Q ss_pred EcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEeecCCCceEEEEEeCC
Q 002519 777 AAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPT 855 (913)
Q Consensus 777 ~~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~ 855 (913)
+.-+.|.+|+....+.-..+.+|++.|.++.|+.||++++++++| ++|+|++.+.+... ...-+|...+..|+|+|+
T Consensus 152 sv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~--~~~fgHsaRvw~~~~~~n 229 (967)
T KOG0974|consen 152 SVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG--CTGFGHSARVWACCFLPN 229 (967)
T ss_pred cccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC--cccccccceeEEEEeccc
Confidence 778999999988554444789999999999999999999999999 99999998875443 355578899999999999
Q ss_pred CCEEEEEEcCCeEEEEECCCCcEEEEcccC-CCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 002519 856 YPSLLVIGCYQSLELWNMSENKTMTLTAHE-GLIAALAVSTETGYVASASHDKFVKLWK 913 (913)
Q Consensus 856 g~~l~s~s~dg~I~iwd~~~~~~~~~~~h~-~~V~~l~~spdg~~Lasgs~DG~I~IWd 913 (913)
++++++.|.+.++|+........+..|. ..|+.++..++.-.++|++.||.|++|+
T Consensus 230 --~i~t~gedctcrvW~~~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~ 286 (967)
T KOG0974|consen 230 --RIITVGEDCTCRVWGVNGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWD 286 (967)
T ss_pred --eeEEeccceEEEEEecccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhh
Confidence 8999999999999987766666777775 5799999999999999999999999996
No 248
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.36 E-value=5.4e-11 Score=121.46 Aligned_cols=108 Identities=23% Similarity=0.477 Sum_probs=86.6
Q ss_pred CCCCeEEEEEcCCCCEEEEEe--CC-eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEEEEcC---CeEEEEE
Q 002519 799 HTKPIDSVCWDPSGELLASVS--ED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY---QSLELWN 872 (913)
Q Consensus 799 h~~~V~sl~~spdg~~l~s~s--~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~d---g~I~iwd 872 (913)
..++|.+++|+|+|+.|++.. .+ .|.+||++ ...+..+. ...+..+.|+|+|++|++++.+ |.|.+||
T Consensus 58 ~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~----~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd 131 (194)
T PF08662_consen 58 KEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK----GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWD 131 (194)
T ss_pred CCCceEEEEECcCCCEEEEEEccCCcccEEEcCc----ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEE
Confidence 345799999999999766553 34 89999995 24555543 5677899999999999999854 5799999
Q ss_pred CCCCcEEEEcccCCCeEEEEEeCCCCEEEEEeC------CCcEEEeC
Q 002519 873 MSENKTMTLTAHEGLIAALAVSTETGYVASASH------DKFVKLWK 913 (913)
Q Consensus 873 ~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~------DG~I~IWd 913 (913)
+.+.+.+....|.. +..++|+|||++|+++.. |..++||+
T Consensus 132 ~~~~~~i~~~~~~~-~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~ 177 (194)
T PF08662_consen 132 VRKKKKISTFEHSD-ATDVEWSPDGRYLATATTSPRLRVDNGFKIWS 177 (194)
T ss_pred CCCCEEeeccccCc-EEEEEEcCCCCEEEEEEeccceeccccEEEEE
Confidence 99888886666654 789999999999999874 77888885
No 249
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.34 E-value=6.8e-10 Score=127.66 Aligned_cols=236 Identities=16% Similarity=0.148 Sum_probs=154.6
Q ss_pred CcEEEEECCCCceeeEeccCCCCeEEEEECCCCCE--E-EEEeCCC--eEEEEEcCCCCceeEEeccCCCCeEEEEEcCC
Q 002519 655 KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPR--L-ATSSFDK--TVRVWDADNPGYSLRTFMGHSASVMSLDFHPN 729 (913)
Q Consensus 655 g~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~--L-asgs~Dg--~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~ 729 (913)
+.|.+.|.+.+. ...+......+.+-+|+|||+. + ++...+| .|.+.++.++ . .+.+....+......|+||
T Consensus 165 ~~l~~~d~dG~~-~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g-~-~~~lt~~~g~~~~p~wSPD 241 (428)
T PRK01029 165 GELWSVDYDGQN-LRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENP-A-GKKILALQGNQLMPTFSPR 241 (428)
T ss_pred ceEEEEcCCCCC-ceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCC-C-ceEeecCCCCccceEECCC
Confidence 357777776544 3445555666788899999975 3 2444444 5777788763 2 2233334445566899999
Q ss_pred CCeEEEEEeCCC----cEEEEEcCCC---eeeEEeeC---CceEEEEecCCCEEEEEEc-CCe--EEEEECCC-CeEEEE
Q 002519 730 KDDLICSCDGDG----EIRYWSINNG---SCTRVFKG---GTAQMRFQPHLGRYLAAAA-ENV--VSILDAET-QACRLS 795 (913)
Q Consensus 730 ~~~ll~sgs~Dg----~I~iwdl~~~---~~~~~~~~---~~~~v~~s~~~~~ll~~~~-dg~--I~i~D~~t-~~~~~~ 795 (913)
|+.++++...+| .+.+|++..+ +....... .....+|+|++..++..+. ++. |+++++.. +.....
T Consensus 242 G~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~ 321 (428)
T PRK01029 242 KKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRL 321 (428)
T ss_pred CCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEE
Confidence 998887765444 3444776653 32333322 2356899999998887764 554 55555542 233444
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEeCC----eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEEEEcC---CeE
Q 002519 796 LQGHTKPIDSVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY---QSL 868 (913)
Q Consensus 796 l~~h~~~V~sl~~spdg~~l~s~s~d----~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~d---g~I 868 (913)
+..+...+...+|+|||++|+..+.+ .|.+||+.++.. ..+......+....|+|||+.|+....+ ..|
T Consensus 322 lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~----~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L 397 (428)
T PRK01029 322 LTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRD----YQLTTSPENKESPSWAIDSLHLVYSAGNSNESEL 397 (428)
T ss_pred eccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCe----EEccCCCCCccceEECCCCCEEEEEECCCCCceE
Confidence 54455667889999999988766542 699999987632 2222223456778999999988876543 479
Q ss_pred EEEECCCCcEEEEcccCCCeEEEEEeCCC
Q 002519 869 ELWNMSENKTMTLTAHEGLIAALAVSTET 897 (913)
Q Consensus 869 ~iwd~~~~~~~~~~~h~~~V~~l~~spdg 897 (913)
++||+.+++...+....+.+...+|+|-.
T Consensus 398 ~~vdl~~g~~~~Lt~~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 398 YLISLITKKTRKIVIGSGEKRFPSWGAFP 426 (428)
T ss_pred EEEECCCCCEEEeecCCCcccCceecCCC
Confidence 99999998887776666777888888753
No 250
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.33 E-value=9.3e-11 Score=119.74 Aligned_cols=148 Identities=13% Similarity=0.278 Sum_probs=110.5
Q ss_pred EEEEECCCCCEEEEEeC----------CCeEEEEEcCCCCceeEEecc-CCCCeEEEEEcCCCCeEEEE-EeCCCcEEEE
Q 002519 679 TDVRFSPSMPRLATSSF----------DKTVRVWDADNPGYSLRTFMG-HSASVMSLDFHPNKDDLICS-CDGDGEIRYW 746 (913)
Q Consensus 679 ~~l~fspdg~~Lasgs~----------Dg~V~Iwdl~~~~~~~~~~~~-h~~~V~sl~fsp~~~~ll~s-gs~Dg~I~iw 746 (913)
..+.|+++|++|++-.. -+...||.++.....+..+.- ..+.|.+++|+|+++.++++ |..++.|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 46789999987755433 134666666544444444432 34579999999999887544 5567899999
Q ss_pred EcCCCeeeEEee-CCceEEEEecCCCEEEEEEcC---CeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeC--
Q 002519 747 SINNGSCTRVFK-GGTAQMRFQPHLGRYLAAAAE---NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSE-- 820 (913)
Q Consensus 747 dl~~~~~~~~~~-~~~~~v~~s~~~~~ll~~~~d---g~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~-- 820 (913)
|++ ++.+..+. .....+.|+|+|..+++++.+ |.|.+||.++.+.+..+. | ..++.++|+|+|++|+++..
T Consensus 89 d~~-~~~i~~~~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~-~~~t~~~WsPdGr~~~ta~t~~ 165 (194)
T PF08662_consen 89 DVK-GKKIFSFGTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-H-SDATDVEWSPDGRYLATATTSP 165 (194)
T ss_pred cCc-ccEeEeecCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-c-CcEEEEEEcCCCCEEEEEEecc
Confidence 997 55555554 456789999999999998753 679999999988887765 3 34789999999999998763
Q ss_pred ----C-eEEEEECC
Q 002519 821 ----D-SVRVWTVG 829 (913)
Q Consensus 821 ----d-~I~vwdl~ 829 (913)
| .++||++.
T Consensus 166 r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 166 RLRVDNGFKIWSFQ 179 (194)
T ss_pred ceeccccEEEEEec
Confidence 4 78999984
No 251
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.32 E-value=3.1e-10 Score=131.44 Aligned_cols=218 Identities=19% Similarity=0.257 Sum_probs=143.5
Q ss_pred EeecCCCCEEEEEEecCCCEEEEEeCC-C--cEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEE-EeCCCe--EEE
Q 002519 628 SVRASTSKVICCHFSSDGKLLATGGHD-K--KAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLAT-SSFDKT--VRV 701 (913)
Q Consensus 628 ~l~~H~~~V~~l~fspdg~~Lasgs~D-g--~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Las-gs~Dg~--V~I 701 (913)
.+..+...+.+..|+|||+.|+..+.+ + .|++||+.+++... +....+.....+|+|||+.|+. .+.+|. |++
T Consensus 212 ~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~ 290 (448)
T PRK04792 212 MLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYV 290 (448)
T ss_pred EeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEE
Confidence 445567788999999999999877543 2 58899998876432 3322334557899999998865 455665 777
Q ss_pred EEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCc--EEEEEcCCCeeeEEe-eCC-ceEEEEecCCCEEEEEE
Q 002519 702 WDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGE--IRYWSINNGSCTRVF-KGG-TAQMRFQPHLGRYLAAA 777 (913)
Q Consensus 702 wdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~--I~iwdl~~~~~~~~~-~~~-~~~v~~s~~~~~ll~~~ 777 (913)
||+++ + ....+..+...+...+|+||++.++++...++. |+++|+.+++..... .+. .....|+|+++.++...
T Consensus 291 ~dl~t-g-~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~ 368 (448)
T PRK04792 291 VDIAT-K-ALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIMVN 368 (448)
T ss_pred EECCC-C-CeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEEEEE
Confidence 78775 3 344455555667789999999988877765554 666777777654432 222 23468999999888876
Q ss_pred cC-C--eEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC----eEEEEECCCCCCCceEEEeecCCCceEEE
Q 002519 778 AE-N--VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFHSC 850 (913)
Q Consensus 778 ~d-g--~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d----~I~vwdl~~~~~~~~i~~~~~~~~~i~~l 850 (913)
.+ + .|.++|+.+++... +... .......|+|+|+.|+..+.+ .+++++.. + .....+......+...
T Consensus 369 ~~~g~~~I~~~dl~~g~~~~-lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~-G---~~~~~l~~~~g~~~~p 442 (448)
T PRK04792 369 RTNGKFNIARQDLETGAMQV-LTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSID-G---RFKARLPAGQGEVKSP 442 (448)
T ss_pred ecCCceEEEEEECCCCCeEE-ccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECC-C---CceEECcCCCCCcCCC
Confidence 53 3 56678888876543 2222 122345899999977665543 46777763 2 2333344444556666
Q ss_pred EEeC
Q 002519 851 VFHP 854 (913)
Q Consensus 851 ~~sp 854 (913)
+|+|
T Consensus 443 ~Wsp 446 (448)
T PRK04792 443 AWSP 446 (448)
T ss_pred ccCC
Confidence 7776
No 252
>KOG4594 consensus Sequence-specific single-stranded-DNA-binding protein [Replication, recombination and repair; Transcription; General function prediction only]
Probab=99.31 E-value=9.8e-13 Score=131.95 Aligned_cols=66 Identities=32% Similarity=0.752 Sum_probs=58.0
Q ss_pred hhhHHHHHHHHHHHHHHhccHHHHHHHHHhcCCCCCCCccCCCCCCchhHhHHHHHHHHHHhhccch
Q 002519 5 NWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKH 71 (913)
Q Consensus 5 ~~~~~~~l~~yiydyl~~~~~~~~a~a~~~e~~~~~~~~~~d~~~~fL~eWw~~fWdi~~a~~~~~~ 71 (913)
.-.|||.|..||||||++-++.++|+.|+.|-.+..+ ..+..+.+||.+|||||||+|.|...++.
T Consensus 13 d~qArekLa~YvYEYLlhvgaqksaqtflseirwekn-itlge~p~FLhsWWcvFwDLYcAAPeRRd 78 (354)
T KOG4594|consen 13 DSQAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKN-ITLGEPPGFLHSWWCVFWDLYCAAPERRD 78 (354)
T ss_pred chhHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhh-hhccCCcchhhhhHHHHHHHhhcCccccC
Confidence 3468999999999999999999999999999887655 66788999999999999999988765543
No 253
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.31 E-value=4.2e-10 Score=130.33 Aligned_cols=220 Identities=19% Similarity=0.215 Sum_probs=147.6
Q ss_pred eeEeecCCCCEEEEEEecCCCEEEEEeCC---CcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEE-EeCCC--eE
Q 002519 626 ANSVRASTSKVICCHFSSDGKLLATGGHD---KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLAT-SSFDK--TV 699 (913)
Q Consensus 626 ~~~l~~H~~~V~~l~fspdg~~Lasgs~D---g~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Las-gs~Dg--~V 699 (913)
...+..+...+...+|+|||+.|+..+.+ ..|++||+.+++... +....+.+.+.+|+|||+.|+. .+.+| .|
T Consensus 191 ~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~I 269 (430)
T PRK00178 191 AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEI 269 (430)
T ss_pred ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCCceE
Confidence 34555677889999999999999887644 369999998876533 3334445667999999998874 44455 58
Q ss_pred EEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCC--cEEEEEcCCCeeeEEee-C-CceEEEEecCCCEEEE
Q 002519 700 RVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDG--EIRYWSINNGSCTRVFK-G-GTAQMRFQPHLGRYLA 775 (913)
Q Consensus 700 ~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg--~I~iwdl~~~~~~~~~~-~-~~~~v~~s~~~~~ll~ 775 (913)
++||+++ +. ...+..+........|+|+++.++++...++ .|+++|+.+++...... + ......|+|+++.++.
T Consensus 270 y~~d~~~-~~-~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~~ 347 (430)
T PRK00178 270 YVMDLAS-RQ-LSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNARPRLSADGKTLVM 347 (430)
T ss_pred EEEECCC-CC-eEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccceEECCCCCEEEE
Confidence 8889886 33 3445556666777899999998887765554 57778887776544322 2 2334689999999888
Q ss_pred EEcC-C--eEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC----eEEEEECCCCCCCceEEEeecCCCceE
Q 002519 776 AAAE-N--VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFH 848 (913)
Q Consensus 776 ~~~d-g--~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d----~I~vwdl~~~~~~~~i~~~~~~~~~i~ 848 (913)
...+ + .|.+||+.+++...... ........|+|||++|+..+.+ .|.++++... ....+....+.+.
T Consensus 348 ~~~~~~~~~l~~~dl~tg~~~~lt~--~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~----~~~~l~~~~g~~~ 421 (430)
T PRK00178 348 VHRQDGNFHVAAQDLQRGSVRILTD--TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGR----VRLPLPTAQGEVR 421 (430)
T ss_pred EEccCCceEEEEEECCCCCEEEccC--CCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC----ceEECcCCCCCcC
Confidence 7753 3 58889998876543222 2223356899999977766543 4667776432 2223333344555
Q ss_pred EEEEeC
Q 002519 849 SCVFHP 854 (913)
Q Consensus 849 ~l~~sp 854 (913)
..+|+|
T Consensus 422 ~p~ws~ 427 (430)
T PRK00178 422 EPSWSP 427 (430)
T ss_pred CCccCC
Confidence 666665
No 254
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.30 E-value=6.5e-10 Score=128.28 Aligned_cols=202 Identities=16% Similarity=0.238 Sum_probs=143.6
Q ss_pred eEEEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCC--CcEEEEEcCCCeeeEE--eeCCceEEEEecCCCEE
Q 002519 698 TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD--GEIRYWSINNGSCTRV--FKGGTAQMRFQPHLGRY 773 (913)
Q Consensus 698 ~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~D--g~I~iwdl~~~~~~~~--~~~~~~~v~~s~~~~~l 773 (913)
.|.++|.+. ...+.+..+...+.+.+|+|+++.++++...+ ..|++||+.+++.... +.+....++|+|++..+
T Consensus 171 ~l~~~d~~g--~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l 248 (417)
T TIGR02800 171 ELQVADYDG--ANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKL 248 (417)
T ss_pred eEEEEcCCC--CCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEE
Confidence 577888753 33455556777889999999999887665433 5799999998754433 33455678999999888
Q ss_pred EEEEc-C--CeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC----eEEEEECCCCCCCceEEEeecCCCc
Q 002519 774 LAAAA-E--NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNK 846 (913)
Q Consensus 774 l~~~~-d--g~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d----~I~vwdl~~~~~~~~i~~~~~~~~~ 846 (913)
++... + ..|++||+.++... .+..+........|+|+|+.|+.++.. .|++||+.++. ...+..+...
T Consensus 249 ~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~----~~~l~~~~~~ 323 (417)
T TIGR02800 249 AVSLSKDGNPDIYVMDLDGKQLT-RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGE----VRRLTFRGGY 323 (417)
T ss_pred EEEECCCCCccEEEEECCCCCEE-ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCC----EEEeecCCCC
Confidence 76543 3 36899999887543 344454555678999999987766543 57888876542 2233334556
Q ss_pred eEEEEEeCCCCEEEEEEcCC---eEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEeCCC
Q 002519 847 FHSCVFHPTYPSLLVIGCYQ---SLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDK 907 (913)
Q Consensus 847 i~~l~~sp~g~~l~s~s~dg---~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~DG 907 (913)
+....|+|++++|+.++.++ .|.+||+.++....+... .......|+||+++|+.++.++
T Consensus 324 ~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~~-~~~~~p~~spdg~~l~~~~~~~ 386 (417)
T TIGR02800 324 NASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLTDT-GLDESPSFAPNGRMILYATTRG 386 (417)
T ss_pred ccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEccCC-CCCCCceECCCCCEEEEEEeCC
Confidence 67889999999999988876 899999988766544433 2345668999999888877654
No 255
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.30 E-value=7.2e-10 Score=122.17 Aligned_cols=246 Identities=13% Similarity=0.227 Sum_probs=167.4
Q ss_pred EEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCC--EEEE-----EeCCCeEEEEEcCCCCc
Q 002519 637 ICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP--RLAT-----SSFDKTVRVWDADNPGY 709 (913)
Q Consensus 637 ~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~--~Las-----gs~Dg~V~Iwdl~~~~~ 709 (913)
+++.|+.|..+.|- -..+.|.+|++.+.+.+ .-+-|...|+.+.++|... .||+ .+.-+.||||.+...+.
T Consensus 129 W~~qfs~dEsl~ar-lv~nev~f~~~~~f~~~-~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~ 206 (566)
T KOG2315|consen 129 WVPQFSIDESLAAR-LVSNEVQFYDLGSFKTI-QHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQ 206 (566)
T ss_pred cccccccchhhhhh-hhcceEEEEecCCccce-eeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccc
Confidence 68999998754432 23567999999874432 2234678899999999743 3332 24456799998863211
Q ss_pred ----eeEEeccCCCCeEEEEEcCCCCeEEEEEeC--C---------CcEEEEEcCCCeeeEEe--eCCceEEEEecCCCE
Q 002519 710 ----SLRTFMGHSASVMSLDFHPNKDDLICSCDG--D---------GEIRYWSINNGSCTRVF--KGGTAQMRFQPHLGR 772 (913)
Q Consensus 710 ----~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~--D---------g~I~iwdl~~~~~~~~~--~~~~~~v~~s~~~~~ 772 (913)
..++|. ...=..+.|++-+.-||+.++. | .+++++++...++...+ .+.+.++.|++++..
T Consensus 207 ~~~~a~ksFF--kadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~E 284 (566)
T KOG2315|consen 207 HQPVANKSFF--KADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGRE 284 (566)
T ss_pred cchhhhcccc--ccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCCCceEEEECCCCCE
Confidence 112222 1222347888887777655432 2 46888888855555554 468899999999987
Q ss_pred EEEEEc--CCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC----eEEEEECCCCCCCceEEEeecCCCc
Q 002519 773 YLAAAA--ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNK 846 (913)
Q Consensus 773 ll~~~~--dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d----~I~vwdl~~~~~~~~i~~~~~~~~~ 846 (913)
++++.. -..+.|||++. ++++.+ .+++-+++-|+|.|++|+.++-+ .|.|||+.+. +++..+.. ..
T Consensus 285 F~VvyGfMPAkvtifnlr~-~~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~---K~i~~~~a--~~ 356 (566)
T KOG2315|consen 285 FAVVYGFMPAKVTIFNLRG-KPVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNR---KLIAKFKA--AN 356 (566)
T ss_pred EEEEEecccceEEEEcCCC-CEeEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEEeccch---hhcccccc--CC
Confidence 766554 67899999874 455544 35677888999999998888866 7999999764 55555543 34
Q ss_pred eEEEEEeCCCCEEEEEEc------CCeEEEEECCCCcEEEEcccCCCeEEEEEeC
Q 002519 847 FHSCVFHPTYPSLLVIGC------YQSLELWNMSENKTMTLTAHEGLIAALAVST 895 (913)
Q Consensus 847 i~~l~~sp~g~~l~s~s~------dg~I~iwd~~~~~~~~~~~h~~~V~~l~~sp 895 (913)
.+.+.|+|||.+|+++++ |+.++||++....+... .....++.++|-|
T Consensus 357 tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~l~~~-~f~sEL~qv~W~P 410 (566)
T KOG2315|consen 357 TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSLLHEK-MFKSELLQVEWRP 410 (566)
T ss_pred ceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCceeehh-hhhHhHhheeeee
Confidence 567899999999999986 57899999876544311 1111566677765
No 256
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.27 E-value=1.1e-09 Score=125.85 Aligned_cols=212 Identities=12% Similarity=0.114 Sum_probs=138.3
Q ss_pred eEEEEEcCCCCceeEEeccCCCCeEEEEEcCCCCe--EEEEEeCCC--cEEEEEcCCCee--eEEeeCCceEEEEecCCC
Q 002519 698 TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDD--LICSCDGDG--EIRYWSINNGSC--TRVFKGGTAQMRFQPHLG 771 (913)
Q Consensus 698 ~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~--ll~sgs~Dg--~I~iwdl~~~~~--~~~~~~~~~~v~~s~~~~ 771 (913)
.|.+.|.+. ...+.+......+.+-+|+|||+. ++++...+| .|++.++.+++. +..+.+......|+|++.
T Consensus 166 ~l~~~d~dG--~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~ 243 (428)
T PRK01029 166 ELWSVDYDG--QNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKK 243 (428)
T ss_pred eEEEEcCCC--CCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCCCC
Confidence 566666653 334445555666778899999986 333444443 588888887754 334556666789999999
Q ss_pred EEEEEEc-CC----eEEEEECCCC---eEEEEecCCCCCeEEEEEcCCCCEEEEEeC-C---eEEEEECCCCCCCceEEE
Q 002519 772 RYLAAAA-EN----VVSILDAETQ---ACRLSLQGHTKPIDSVCWDPSGELLASVSE-D---SVRVWTVGSGSEGECVHE 839 (913)
Q Consensus 772 ~ll~~~~-dg----~I~i~D~~t~---~~~~~l~~h~~~V~sl~~spdg~~l~s~s~-d---~I~vwdl~~~~~~~~i~~ 839 (913)
.++.... +| .+.+|++..+ +.......+.......+|+|||+.|+..+. + .|.++++.... .....
T Consensus 244 ~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g--~~~~~ 321 (428)
T PRK01029 244 LLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEG--QSPRL 321 (428)
T ss_pred EEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccc--cceEE
Confidence 9887764 22 3444676652 333333333334567899999997776663 3 35555553211 12333
Q ss_pred eecCCCceEEEEEeCCCCEEEEEEcC---CeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEeC-C--CcEEEeC
Q 002519 840 LSCNGNKFHSCVFHPTYPSLLVIGCY---QSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASH-D--KFVKLWK 913 (913)
Q Consensus 840 ~~~~~~~i~~l~~sp~g~~l~s~s~d---g~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~-D--G~I~IWd 913 (913)
+......+....|+|||+.|+..+.+ ..|++||+.+++...+......+....|+|||++|+.... + ..|++||
T Consensus 322 lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vd 401 (428)
T PRK01029 322 LTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLIS 401 (428)
T ss_pred eccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEE
Confidence 33344566788999999999887654 3799999999988776655567788999999998775443 2 3455553
No 257
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.27 E-value=9.2e-10 Score=119.88 Aligned_cols=273 Identities=15% Similarity=0.180 Sum_probs=189.0
Q ss_pred EeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCC----------
Q 002519 628 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDK---------- 697 (913)
Q Consensus 628 ~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg---------- 697 (913)
.+..-.-+|..++|||.|++|++.... .|.+|+...+..+..+. ...|..+.|+|+++||++-+...
T Consensus 27 ~~~~~~~p~~~~~~SP~G~~l~~~~~~-~V~~~~g~~~~~l~~~~--~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp 103 (561)
T COG5354 27 RFESENWPVAYVSESPLGTYLFSEHAA-GVECWGGPSKAKLVRFR--HPDVKYLDFSPNEKYLVTWSREPIIEPEIEISP 103 (561)
T ss_pred cccccCcchhheeecCcchheehhhcc-ceEEccccchhheeeee--cCCceecccCcccceeeeeccCCccChhhccCC
Confidence 344456789999999999999987655 48999988777555554 24599999999999999876543
Q ss_pred -----eEEEEEcCCCCceeEEeccCCCC--eE-EEEEcCCCCeEEEEEeCCCcEEEEEcCCCee----eEEee-CCceEE
Q 002519 698 -----TVRVWDADNPGYSLRTFMGHSAS--VM-SLDFHPNKDDLICSCDGDGEIRYWSINNGSC----TRVFK-GGTAQM 764 (913)
Q Consensus 698 -----~V~Iwdl~~~~~~~~~~~~h~~~--V~-sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~----~~~~~-~~~~~v 764 (913)
.+.|||+.+ +..+..+.....+ .+ -+.|+-++...+-. ....++|+++ +... .+.++ .++...
T Consensus 104 ~~~~n~~~vwd~~s-g~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv--v~~sl~i~e~-t~n~~~~p~~~lr~~gi~dF 179 (561)
T COG5354 104 FTSKNNVFVWDIAS-GMIVFSFNGISQPYLGWPVLKFSIDDKYVARV--VGSSLYIHEI-TDNIEEHPFKNLRPVGILDF 179 (561)
T ss_pred ccccCceeEEeccC-ceeEeeccccCCcccccceeeeeecchhhhhh--ccCeEEEEec-CCccccCchhhccccceeeE
Confidence 499999998 7788888776655 44 57788776543322 3467899997 3321 12222 466677
Q ss_pred EEecCCC--EEEEE-----EcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEe------------CCeEEE
Q 002519 765 RFQPHLG--RYLAA-----AAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVS------------EDSVRV 825 (913)
Q Consensus 765 ~~s~~~~--~ll~~-----~~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s------------~d~I~v 825 (913)
.|+|.++ .+++- ...+.++||.+..+..+.+..-....-..+.|.+.|++|++-- +..++|
T Consensus 180 sisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl 259 (561)
T COG5354 180 SISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYL 259 (561)
T ss_pred EecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEE
Confidence 7888743 22222 2357899999887766554433333445788999999766431 125788
Q ss_pred EECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEEEEc--CCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEE
Q 002519 826 WTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGC--YQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASA 903 (913)
Q Consensus 826 wdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~--dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~Lasg 903 (913)
+++... .+.......++|+.++|.|.++.+++++. .-.+.++|++.+ +.+......=+.+.|+|.+++++.+
T Consensus 260 ~~~~e~----~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N--l~~~~Pe~~rNT~~fsp~~r~il~a 333 (561)
T COG5354 260 LRITER----SIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN--LRFYFPEQKRNTIFFSPHERYILFA 333 (561)
T ss_pred Eeeccc----ccceeccccccceeeeecccCCceeEEecccccceeecccccc--eEEecCCcccccccccCcccEEEEe
Confidence 888632 22222244789999999999998887774 458999999887 4444555556677888888888887
Q ss_pred eCC---CcEEEeC
Q 002519 904 SHD---KFVKLWK 913 (913)
Q Consensus 904 s~D---G~I~IWd 913 (913)
+-| |.|.|||
T Consensus 334 gF~nl~gni~i~~ 346 (561)
T COG5354 334 GFDNLQGNIEIFD 346 (561)
T ss_pred cCCccccceEEec
Confidence 765 5677775
No 258
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.26 E-value=3.5e-10 Score=115.40 Aligned_cols=242 Identities=19% Similarity=0.220 Sum_probs=168.5
Q ss_pred cCCCCEEEEEEec---CCC-EEEEEeCCCcEEEEECCCCceeeEeccCC------CCeEEEEECCCCCEEEEEeCCCeEE
Q 002519 631 ASTSKVICCHFSS---DGK-LLATGGHDKKAVLWHTDTLKSKTNLEEHS------SLITDVRFSPSMPRLATSSFDKTVR 700 (913)
Q Consensus 631 ~H~~~V~~l~fsp---dg~-~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~------~~V~~l~fspdg~~Lasgs~Dg~V~ 700 (913)
..+..+..+.|.. +|. .|+-+..+|.|.+|..........+++-+ ....++.|++.+..++++-.+|.+.
T Consensus 67 ~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~ 146 (339)
T KOG0280|consen 67 TDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSIS 146 (339)
T ss_pred ecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEE
Confidence 3455677777764 455 66677788999999877555554444321 1355788999999999999999998
Q ss_pred EEEcCC-CCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeCCceEEEEecCCCEEEEEEcC
Q 002519 701 VWDADN-PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAE 779 (913)
Q Consensus 701 Iwdl~~-~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~s~~~~~ll~~~~d 779 (913)
+-+... .-+.+..++.|..+++...|+....+++++|++|+.+..||++..+ ..
T Consensus 147 ~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~-~~------------------------ 201 (339)
T KOG0280|consen 147 GVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPK-TF------------------------ 201 (339)
T ss_pred EEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCc-ce------------------------
Confidence 555443 1123447889999999999998888899999999999999998322 00
Q ss_pred CeEEEEECCCCeEEEEecCCCCCeEEEEEcC-CCCEEEEEeCC-eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCC
Q 002519 780 NVVSILDAETQACRLSLQGHTKPIDSVCWDP-SGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYP 857 (913)
Q Consensus 780 g~I~i~D~~t~~~~~~l~~h~~~V~sl~~sp-dg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~ 857 (913)
+|. ..+.|...|.+|.-+| .+.+|++|+.| .|++||.|+-. +.+..-.. .+.|+.+.++|.-.
T Consensus 202 ----i~~--------n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~--kPl~~~~v-~GGVWRi~~~p~~~ 266 (339)
T KOG0280|consen 202 ----IWH--------NSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMG--KPLFKAKV-GGGVWRIKHHPEIF 266 (339)
T ss_pred ----eee--------cceeeecceEEEecCCCCCceEEEeccccceeeeehhccc--CccccCcc-ccceEEEEecchhh
Confidence 110 1233777888888776 46699999999 99999998543 33333222 47899999998543
Q ss_pred -EEEEEEcCCeEEEEECCCCcE------EEEcccCCCeEEEEEeCCCCEEEEEe-CCCcEE-Ee
Q 002519 858 -SLLVIGCYQSLELWNMSENKT------MTLTAHEGLIAALAVSTETGYVASAS-HDKFVK-LW 912 (913)
Q Consensus 858 -~l~s~s~dg~I~iwd~~~~~~------~~~~~h~~~V~~l~~spdg~~Lasgs-~DG~I~-IW 912 (913)
.+++++..+..+|-++..+.. .....|.+-+..-.|.....+|+||+ .|+.|+ +|
T Consensus 267 ~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~W 330 (339)
T KOG0280|consen 267 HRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLW 330 (339)
T ss_pred hHHHHHHHhcCceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeee
Confidence 344445555566666654422 14567888888888865556889876 577755 77
No 259
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.26 E-value=7.2e-10 Score=123.19 Aligned_cols=184 Identities=18% Similarity=0.278 Sum_probs=146.9
Q ss_pred cCCCEEEEEeCCCcEEEEECCCCceeeEecc---CCCCeEEEEEC------C--------------CCCEEEEEeCCCeE
Q 002519 643 SDGKLLATGGHDKKAVLWHTDTLKSKTNLEE---HSSLITDVRFS------P--------------SMPRLATSSFDKTV 699 (913)
Q Consensus 643 pdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~---h~~~V~~l~fs------p--------------dg~~Lasgs~Dg~V 699 (913)
+-..++|....||.++|||+.+++....|.. -++..++..|. | |...|+-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 4557999999999999999998877666542 23445555552 2 34467888889999
Q ss_pred EEEEcCCCCceeEEec--cCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeC---CceEEEEecCCCEEE
Q 002519 700 RVWDADNPGYSLRTFM--GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYL 774 (913)
Q Consensus 700 ~Iwdl~~~~~~~~~~~--~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~s~~~~~ll 774 (913)
.+|++.. +.....+. .|.+.|.++.++.+-. .|.+++.|+.|.+|+...+..++.++. ....++++++++.++
T Consensus 83 ~~ys~~~-g~it~~~st~~h~~~v~~~~~~~~~~-ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~ 160 (541)
T KOG4547|consen 83 LLYSVAG-GEITAKLSTDKHYGNVNEILDAQRLG-CIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILL 160 (541)
T ss_pred EEEEecC-CeEEEEEecCCCCCcceeeecccccC-ceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEE
Confidence 9999987 55555444 6999999999987755 566999999999999999999888875 356799999988777
Q ss_pred EEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCC-----CCEEEEEeCC--eEEEEECCC
Q 002519 775 AAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPS-----GELLASVSED--SVRVWTVGS 830 (913)
Q Consensus 775 ~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spd-----g~~l~s~s~d--~I~vwdl~~ 830 (913)
+++ +.|.+||+++++.+.+|.+|.++|+++.|.-+ |.+|+++... .+.+|-+..
T Consensus 161 ~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 161 TAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred ecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 654 68999999999999999999999999999876 7777665543 778887765
No 260
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.25 E-value=6.9e-10 Score=124.15 Aligned_cols=274 Identities=19% Similarity=0.270 Sum_probs=196.8
Q ss_pred CCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCC---------------ceeeEeccCCCCeEEEEECCCCCEEEEEeCC
Q 002519 632 STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL---------------KSKTNLEEHSSLITDVRFSPSMPRLATSSFD 696 (913)
Q Consensus 632 H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~---------------~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D 696 (913)
......|++|+....++|+|+.||.++|..+.+. ..-.+++||+..|.-+.|+.+...|-|+..+
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~ 92 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTS 92 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCC
Confidence 4557899999999999999999999999987632 1224678999999999999999999999999
Q ss_pred CeEEEEEcCCCCceeEEe-ccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeee-EEeeC-CceEEEEecCCCEE
Q 002519 697 KTVRVWDADNPGYSLRTF-MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT-RVFKG-GTAQMRFQPHLGRY 773 (913)
Q Consensus 697 g~V~Iwdl~~~~~~~~~~-~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~-~~~~~-~~~~v~~s~~~~~l 773 (913)
|.|.||-+-.+..+-..+ ...++.|.+++|..+|.. |+....||.|.+=.++..+.. +.+++ ....+.|+++...+
T Consensus 93 GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~k-IcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~~~~ 171 (1189)
T KOG2041|consen 93 GLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTK-ICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSEDLEQA 171 (1189)
T ss_pred ceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcE-EEEEEccCCEEEEeeccceecchhcchheccceeecccHHHH
Confidence 999999998744433222 234567899999999875 457788998888777654432 22333 23467899999989
Q ss_pred EEEEcCCeEEEEECCCC-------eEEEEe----cCCCCCeEEEEEc--------CCCCEEEEEeCC-eEEEEECCCCCC
Q 002519 774 LAAAAENVVSILDAETQ-------ACRLSL----QGHTKPIDSVCWD--------PSGELLASVSED-SVRVWTVGSGSE 833 (913)
Q Consensus 774 l~~~~dg~I~i~D~~t~-------~~~~~l----~~h~~~V~sl~~s--------pdg~~l~s~s~d-~I~vwdl~~~~~ 833 (913)
+.+-..|.+.+||.... .+.... ......|-.++|. |+...|+++..+ .+.|..-.+...
T Consensus 172 Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~ 251 (1189)
T KOG2041|consen 172 LFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPE 251 (1189)
T ss_pred HhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCC
Confidence 98888999999997642 121111 1122336666664 366678877776 666655443333
Q ss_pred CceEEEeecCCCceEEEEEeCCCCEEEEEEcCC---------eEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEe
Q 002519 834 GECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ---------SLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASAS 904 (913)
Q Consensus 834 ~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg---------~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs 904 (913)
+..+.+ +-.+..+.|+++|..|++++.+. .|.+|..-....-++......|++++|-..|-.+|.+-
T Consensus 252 Pvv~dt----gm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~G~i~gtlkvpg~~It~lsWEg~gLriA~Av 327 (1189)
T KOG2041|consen 252 PVVVDT----GMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPYGHIVGTLKVPGSCITGLSWEGTGLRIAIAV 327 (1189)
T ss_pred CeEEec----ccEeecceecCCCcEEEEccCcccccCccccceEEEeccchhheEEEecCCceeeeeEEcCCceEEEEEe
Confidence 222222 56788899999999999998753 67777665555557788888999999987776666553
Q ss_pred CCCcEEE
Q 002519 905 HDKFVKL 911 (913)
Q Consensus 905 ~DG~I~I 911 (913)
|+.|++
T Consensus 328 -dsfiyf 333 (1189)
T KOG2041|consen 328 -DSFIYF 333 (1189)
T ss_pred -cceEEE
Confidence 555554
No 261
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.25 E-value=2.2e-08 Score=110.04 Aligned_cols=247 Identities=11% Similarity=0.083 Sum_probs=154.8
Q ss_pred cceeeeEeecCCCCEEEEEEecCCCEEEEEeC----------CCcEEEEECCCCceeeEeccCCC-------CeEEEEEC
Q 002519 622 SFKEANSVRASTSKVICCHFSSDGKLLATGGH----------DKKAVLWHTDTLKSKTNLEEHSS-------LITDVRFS 684 (913)
Q Consensus 622 ~~~~~~~l~~H~~~V~~l~fspdg~~Lasgs~----------Dg~V~vwd~~~~~~~~~l~~h~~-------~V~~l~fs 684 (913)
+.+.+..+.....+-. + +||||+.|+++.. +..|.|||+.+++.+..+..... ....++++
T Consensus 36 ~~~v~g~i~~G~~P~~-~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls 113 (352)
T TIGR02658 36 AGRVLGMTDGGFLPNP-V-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLT 113 (352)
T ss_pred CCEEEEEEEccCCCce-e-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEEC
Confidence 4556666665444333 4 9999998887765 78999999999999988875322 34478999
Q ss_pred CCCCEEEEEeC--CCeEEEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCC-Cee-e---EEe
Q 002519 685 PSMPRLATSSF--DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN-GSC-T---RVF 757 (913)
Q Consensus 685 pdg~~Lasgs~--Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~-~~~-~---~~~ 757 (913)
|||++|++... +..|.|+|+.+ ++.+..+.-. +...-+..+.+ .++ +-+.||......+.+ ++. . ..|
T Consensus 114 ~dgk~l~V~n~~p~~~V~VvD~~~-~kvv~ei~vp-~~~~vy~t~e~-~~~--~~~~Dg~~~~v~~d~~g~~~~~~~~vf 188 (352)
T TIGR02658 114 PDNKTLLFYQFSPSPAVGVVDLEG-KAFVRMMDVP-DCYHIFPTAND-TFF--MHCRDGSLAKVGYGTKGNPKIKPTEVF 188 (352)
T ss_pred CCCCEEEEecCCCCCEEEEEECCC-CcEEEEEeCC-CCcEEEEecCC-ccE--EEeecCceEEEEecCCCceEEeeeeee
Confidence 99999998763 68999999998 5556555431 11111222211 111 112244443333322 111 1 111
Q ss_pred eCCc----eEEEEec-CCCEEEEEEcCCeEEEEECCCC-----eEEEEecC-------CCCCeEEEEEcCCCCEEEEEe-
Q 002519 758 KGGT----AQMRFQP-HLGRYLAAAAENVVSILDAETQ-----ACRLSLQG-------HTKPIDSVCWDPSGELLASVS- 819 (913)
Q Consensus 758 ~~~~----~~v~~s~-~~~~ll~~~~dg~I~i~D~~t~-----~~~~~l~~-------h~~~V~sl~~spdg~~l~s~s- 819 (913)
.... ..-.|.+ ++..+++ +.+|.|++.|+... +....+.. ....+.-++++++++.+++..
T Consensus 189 ~~~~~~v~~rP~~~~~dg~~~~v-s~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~ 267 (352)
T TIGR02658 189 HPEDEYLINHPAYSNKSGRLVWP-TYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLAD 267 (352)
T ss_pred cCCccccccCCceEcCCCcEEEE-ecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEec
Confidence 1100 0013455 5544544 44599999995443 33332221 123344599999999777642
Q ss_pred ---------C-CeEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCC-EEEEEE-cCCeEEEEECCCCcEEE
Q 002519 820 ---------E-DSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYP-SLLVIG-CYQSLELWNMSENKTMT 880 (913)
Q Consensus 820 ---------~-d~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~-~l~s~s-~dg~I~iwd~~~~~~~~ 880 (913)
. +.|.++|..++ +.+..+.. +..+..+++++|++ +|++.. .++.|.++|..+++.+.
T Consensus 268 ~~~~~thk~~~~~V~ViD~~t~---kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~ 336 (352)
T TIGR02658 268 QRAKWTHKTASRFLFVVDAKTG---KRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELS 336 (352)
T ss_pred CCccccccCCCCEEEEEECCCC---eEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEe
Confidence 1 37999999776 55555554 66899999999999 777776 46889999999998873
No 262
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.23 E-value=6.2e-11 Score=128.70 Aligned_cols=278 Identities=18% Similarity=0.225 Sum_probs=188.2
Q ss_pred eeeEeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCC-------CceeeEeccCCCCeEEEEECCCCCEEEEEeCCC
Q 002519 625 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT-------LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDK 697 (913)
Q Consensus 625 ~~~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~-------~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg 697 (913)
.+..+.+|...|+.++--.+.+.+++++.|++|++|.++. ..+..++..|+.+|.++.|-.+.++++++ ||
T Consensus 727 rL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~ 804 (1034)
T KOG4190|consen 727 RLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DG 804 (1034)
T ss_pred eeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cC
Confidence 3446789999999998888888999999999999999862 34667888999999999999998888766 78
Q ss_pred eEEEEEcCCCCceeEEec--cCCCCeEEEEEcCC--CCeEEEEEeCCCcEEEEEcCCCeeeEEee--------CCceEEE
Q 002519 698 TVRVWDADNPGYSLRTFM--GHSASVMSLDFHPN--KDDLICSCDGDGEIRYWSINNGSCTRVFK--------GGTAQMR 765 (913)
Q Consensus 698 ~V~Iwdl~~~~~~~~~~~--~h~~~V~sl~fsp~--~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~--------~~~~~v~ 765 (913)
-|.+||.-- +..+.... ...+.+..|...++ ...+++.|+...+|+++|.+....+..++ +-+.+++
T Consensus 805 giHlWDPFi-gr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~ia 883 (1034)
T KOG4190|consen 805 GIHLWDPFI-GRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIA 883 (1034)
T ss_pred cceeecccc-cchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEE
Confidence 899999765 33322111 11222333333333 33345555889999999999887665543 2346788
Q ss_pred EecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEE-EECCCCCCCceEEEeecC
Q 002519 766 FQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRV-WTVGSGSEGECVHELSCN 843 (913)
Q Consensus 766 ~s~~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~v-wdl~~~~~~~~i~~~~~~ 843 (913)
+.+.|++++++-+.|+|.+.|.++|+.+...+.-+.....++ .|....|+....| ++.| |....+ ......+..
T Consensus 884 Va~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhaldg---imh~q~kpp 959 (1034)
T KOG4190|consen 884 VADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDG---IMHLQDKPP 959 (1034)
T ss_pred eccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCC---eeeeccCCC
Confidence 999999999999999999999999998887665444444343 3455566666666 7777 765443 111111111
Q ss_pred CCceEEEEEeCCCCEEEEEEcCCeEEEEECCCC-------cEEEEcccCCCeEEEEEeCCCCEEEEEeCCCcEEE
Q 002519 844 GNKFHSCVFHPTYPSLLVIGCYQSLELWNMSEN-------KTMTLTAHEGLIAALAVSTETGYVASASHDKFVKL 911 (913)
Q Consensus 844 ~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~-------~~~~~~~h~~~V~~l~~spdg~~Lasgs~DG~I~I 911 (913)
..+.. -.-.-|..+++......+.||.-... ..+.-....+..++++.-|-+.-+..|+..|.|.+
T Consensus 960 pepah--flqsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 960 PEPAH--FLQSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred Ccchh--hhhccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccccchhhccCCCCceee
Confidence 11111 11224566777777778888843211 11223345677888888887777777888888876
No 263
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.23 E-value=5.5e-11 Score=133.37 Aligned_cols=278 Identities=16% Similarity=0.302 Sum_probs=195.9
Q ss_pred CCCEEEEEEecCCCEEEEEeCCCcEEEEECC-CCceeeEecc-CCCCeEEEEECCCCC--EEEEEeCCCeEEEEEcCCC-
Q 002519 633 TSKVICCHFSSDGKLLATGGHDKKAVLWHTD-TLKSKTNLEE-HSSLITDVRFSPSMP--RLATSSFDKTVRVWDADNP- 707 (913)
Q Consensus 633 ~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~-~~~~~~~l~~-h~~~V~~l~fspdg~--~Lasgs~Dg~V~Iwdl~~~- 707 (913)
.+.+.++.++|.|+-+|.++.-| +.+.|++ .+...+-+.. ..-.|-++.|++... +-++......-.||++...
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss 102 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSS 102 (1081)
T ss_pred cCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCC
Confidence 45788899999999999998776 4556666 3444443332 223477888887533 4444444555678988642
Q ss_pred -CceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCee-eEE---eeCCceEEEEecCCCEEEEEEcCCeE
Q 002519 708 -GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC-TRV---FKGGTAQMRFQPHLGRYLAAAAENVV 782 (913)
Q Consensus 708 -~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~-~~~---~~~~~~~v~~s~~~~~ll~~~~dg~I 782 (913)
..+-..+.+|...|+.+.|+|....++++|+.|-.|..||+++... +.. .......+.|+.....+++.+..+.|
T Consensus 103 ~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i 182 (1081)
T KOG0309|consen 103 SNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDI 182 (1081)
T ss_pred ccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCce
Confidence 3344566799999999999999999999999999999999997642 222 34567789999999999999999999
Q ss_pred EEEECCCC-eEEEEecCCCCCeEEEEEcCCC-CEEEEEeCC-eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEE
Q 002519 783 SILDAETQ-ACRLSLQGHTKPIDSVCWDPSG-ELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSL 859 (913)
Q Consensus 783 ~i~D~~t~-~~~~~l~~h~~~V~sl~~spdg-~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l 859 (913)
++||.+.+ .++..+++|...|+++.|..-- ..+.+++.| +|++||.....+. -........+|..-.+-|-|+-.
T Consensus 183 ~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e--~~~~vtt~~piw~~r~~Pfg~g~ 260 (1081)
T KOG0309|consen 183 FVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTE--SKRTVTTNFPIWRGRYLPFGEGY 260 (1081)
T ss_pred EEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccc--cceeccccCcceeccccccCcee
Confidence 99999987 7888999999999999997632 356677777 9999999754221 11112224566666666655433
Q ss_pred EEE-----------EcCCeEEEEECCCCc--EEEEcccCCCeEEEEEeCCC--------C--EEEEEeCCCcEEEeC
Q 002519 860 LVI-----------GCYQSLELWNMSENK--TMTLTAHEGLIAALAVSTET--------G--YVASASHDKFVKLWK 913 (913)
Q Consensus 860 ~s~-----------s~dg~I~iwd~~~~~--~~~~~~h~~~V~~l~~spdg--------~--~Lasgs~DG~I~IWd 913 (913)
++- -.++....|++.++. +.++.+|++.|..+.|-..+ + .|+|.+.|..+++|.
T Consensus 261 ~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWp 337 (1081)
T KOG0309|consen 261 CIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWP 337 (1081)
T ss_pred EeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeee
Confidence 322 222233334443332 23889999999877774321 1 599999999999993
No 264
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.22 E-value=1.9e-08 Score=106.39 Aligned_cols=259 Identities=11% Similarity=0.110 Sum_probs=177.4
Q ss_pred CCcEEEEECCCC--ce-eeEeccCCCCeEEEEECCCCCEEEEEeC---CCeEEEEEcCCCCceeEEe---ccCCCCeEEE
Q 002519 654 DKKAVLWHTDTL--KS-KTNLEEHSSLITDVRFSPSMPRLATSSF---DKTVRVWDADNPGYSLRTF---MGHSASVMSL 724 (913)
Q Consensus 654 Dg~V~vwd~~~~--~~-~~~l~~h~~~V~~l~fspdg~~Lasgs~---Dg~V~Iwdl~~~~~~~~~~---~~h~~~V~sl 724 (913)
+.-|++|++++. +. ...+-.+...++-|+|+++.++|+++-. +|.|..|.++.....+..+ ......-+.+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 467999998832 21 1223346778999999999999998865 4788888887531222211 1122333779
Q ss_pred EEcCCCCeEEEEEeCCCcEEEEEcCC-CeeeEE---e--e----------CCceEEEEecCCCEEEEEEc-CCeEEEEEC
Q 002519 725 DFHPNKDDLICSCDGDGEIRYWSINN-GSCTRV---F--K----------GGTAQMRFQPHLGRYLAAAA-ENVVSILDA 787 (913)
Q Consensus 725 ~fsp~~~~ll~sgs~Dg~I~iwdl~~-~~~~~~---~--~----------~~~~~v~~s~~~~~ll~~~~-dg~I~i~D~ 787 (913)
+++++++.++++-...|.|.++-+.. |..... + . .+.....+.|++.+++++.- ...|.+|++
T Consensus 95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~ 174 (346)
T COG2706 95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDL 174 (346)
T ss_pred EECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEc
Confidence 99999988887777789999999965 332221 1 1 12556779999988888776 578999999
Q ss_pred CCCeEEEEec---CCCCCeEEEEEcCCCCEEEEEeCC--eEEEEECCCC-CCCceEEEeec------CCCceEEEEEeCC
Q 002519 788 ETQACRLSLQ---GHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSG-SEGECVHELSC------NGNKFHSCVFHPT 855 (913)
Q Consensus 788 ~t~~~~~~l~---~h~~~V~sl~~spdg~~l~s~s~d--~I~vwdl~~~-~~~~~i~~~~~------~~~~i~~l~~sp~ 855 (913)
..++....-. .....-+.|.|+|++++.++.++= +|.+|.+... .+.+.+..+.. .......+.++++
T Consensus 175 ~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~d 254 (346)
T COG2706 175 DDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPD 254 (346)
T ss_pred ccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCC
Confidence 9775433221 233456889999999987777653 9999999774 33334433322 2445778899999
Q ss_pred CCEEEEEEcC-CeEEEEECCC--CcEE---EEcccCCCeEEEEEeCCCCEEEEEeCC-CcEEEe
Q 002519 856 YPSLLVIGCY-QSLELWNMSE--NKTM---TLTAHEGLIAALAVSTETGYVASASHD-KFVKLW 912 (913)
Q Consensus 856 g~~l~s~s~d-g~I~iwd~~~--~~~~---~~~~h~~~V~~l~~spdg~~Lasgs~D-G~I~IW 912 (913)
|++|+++... ..|.+|.+.. +++. ....+...-+.+.|++.+++|++++.| ..|.||
T Consensus 255 GrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf 318 (346)
T COG2706 255 GRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVF 318 (346)
T ss_pred CCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEE
Confidence 9998887654 4888887754 3332 233455568899999999999998865 457666
No 265
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.21 E-value=6.9e-09 Score=118.05 Aligned_cols=254 Identities=13% Similarity=0.066 Sum_probs=161.0
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCceeEEeccCCCCe--
Q 002519 644 DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASV-- 721 (913)
Q Consensus 644 dg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V-- 721 (913)
++..+++++.++.|+.||.++++.+............... .+..++.++.+|.|+.||.++ ++.+..+......+
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~a~d~~t-G~~~W~~~~~~~~~~~ 180 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPLV--ANGLVVVRTNDGRLTALDAAT-GERLWTYSRVTPALTL 180 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCEE--ECCEEEEECCCCeEEEEEcCC-CceeeEEccCCCceee
Confidence 4667888889999999999999988766543221111122 245777788899999999987 55444443222111
Q ss_pred ---EEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeCCc----e------EEE--EecCCCEEEEEEcCCeEEEEE
Q 002519 722 ---MSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGT----A------QMR--FQPHLGRYLAAAAENVVSILD 786 (913)
Q Consensus 722 ---~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~----~------~v~--~s~~~~~ll~~~~dg~I~i~D 786 (913)
.+..+. ++ .++.+..++.|..+|+++++.+....... . .+. ....++.+++++.++.++.||
T Consensus 181 ~~~~sp~~~--~~-~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d 257 (377)
T TIGR03300 181 RGSASPVIA--DG-GVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALD 257 (377)
T ss_pred cCCCCCEEE--CC-EEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEE
Confidence 111222 23 45577888999999999998765433110 0 000 111357888888899999999
Q ss_pred CCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEeec-CCCceEEEEEeCCCCEEEEEEc
Q 002519 787 AETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSC-NGNKFHSCVFHPTYPSLLVIGC 864 (913)
Q Consensus 787 ~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~-~~~~i~~l~~sp~g~~l~s~s~ 864 (913)
.++++.+...... ...... .++..|++++.+ .|..+|..+++ .+..... ....+..... .+..|++++.
T Consensus 258 ~~tG~~~W~~~~~--~~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~---~~W~~~~~~~~~~ssp~i--~g~~l~~~~~ 328 (377)
T TIGR03300 258 LRSGRVLWKRDAS--SYQGPA--VDDNRLYVTDADGVVVALDRRSGS---ELWKNDELKYRQLTAPAV--VGGYLVVGDF 328 (377)
T ss_pred CCCCcEEEeeccC--CccCce--EeCCEEEEECCCCeEEEEECCCCc---EEEccccccCCccccCEE--ECCEEEEEeC
Confidence 9999888766521 112222 245566666666 99999998773 3333211 1111222222 4568999999
Q ss_pred CCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 002519 865 YQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 913 (913)
Q Consensus 865 dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~Lasgs~DG~I~IWd 913 (913)
+|.|+++|..+++.+ .+..+...+..--...++ .|+.++.||.|+.|.
T Consensus 329 ~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~~~-~l~v~~~dG~l~~~~ 377 (377)
T TIGR03300 329 EGYLHWLSREDGSFVARLKTDGSGIASPPVVVGD-GLLVQTRDGDLYAFR 377 (377)
T ss_pred CCEEEEEECCCCCEEEEEEcCCCccccCCEEECC-EEEEEeCCceEEEeC
Confidence 999999999999988 444455443332222333 588899999998874
No 266
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.20 E-value=7.3e-10 Score=115.09 Aligned_cols=238 Identities=17% Similarity=0.258 Sum_probs=155.5
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCc----eeEEeccC------------CCCeEEEEEcCCCCe-EEEE
Q 002519 674 HSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGY----SLRTFMGH------------SASVMSLDFHPNKDD-LICS 736 (913)
Q Consensus 674 h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~----~~~~~~~h------------~~~V~sl~fsp~~~~-ll~s 736 (913)
....|.+|.|...|.+||||+.+|.|.++.-+.... ....+..| ...|..|.|.++++. .++.
T Consensus 24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl 103 (433)
T KOG1354|consen 24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL 103 (433)
T ss_pred hhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence 345689999999999999999999999997664332 22333333 246888999886543 3446
Q ss_pred EeCCCcEEEEEcCCCeeeE-----------------------------------Ee----eCCceEEEEecCCCEEEEEE
Q 002519 737 CDGDGEIRYWSINNGSCTR-----------------------------------VF----KGGTAQMRFQPHLGRYLAAA 777 (913)
Q Consensus 737 gs~Dg~I~iwdl~~~~~~~-----------------------------------~~----~~~~~~v~~s~~~~~ll~~~ 777 (913)
...|.+|++|.+....... .+ ..++.++.+..+...++ .+
T Consensus 104 stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~l-SA 182 (433)
T KOG1354|consen 104 STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFL-SA 182 (433)
T ss_pred ecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEe-ec
Confidence 6789999999986432111 11 11345566666655544 45
Q ss_pred cCCeEEEEECCCCeE---EEEecCC-----CCCeEEEEEcCCCC--EEEEEeCCeEEEEECCCCCC-------------C
Q 002519 778 AENVVSILDAETQAC---RLSLQGH-----TKPIDSVCWDPSGE--LLASVSEDSVRVWTVGSGSE-------------G 834 (913)
Q Consensus 778 ~dg~I~i~D~~t~~~---~~~l~~h-----~~~V~sl~~spdg~--~l~s~s~d~I~vwdl~~~~~-------------~ 834 (913)
.|=.|.+|.++-... +..++.+ ...|++..|+|... ++++.+.++|++.|++.... +
T Consensus 183 DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp 262 (433)
T KOG1354|consen 183 DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDP 262 (433)
T ss_pred cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCC
Confidence 677899998875422 2222322 24588999999543 44555556999999984310 0
Q ss_pred ceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECC-CCc-EEEEcccC------------CCe---EEEEEeCCC
Q 002519 835 ECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMS-ENK-TMTLTAHE------------GLI---AALAVSTET 897 (913)
Q Consensus 835 ~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~-~~~-~~~~~~h~------------~~V---~~l~~spdg 897 (913)
.....+..--..|..+.|+++|+++++-. .-+|+|||+. ..+ +.++.-|. ..| ..++|+-++
T Consensus 263 ~~rsffseiIsSISDvKFs~sGryilsRD-yltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~ 341 (433)
T KOG1354|consen 263 SSRSFFSEIISSISDVKFSHSGRYILSRD-YLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGND 341 (433)
T ss_pred cchhhHHHHhhhhhceEEccCCcEEEEec-cceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCc
Confidence 11111112234578899999999887643 3699999984 333 33444433 223 457899999
Q ss_pred CEEEEEeCCCcEEEeC
Q 002519 898 GYVASASHDKFVKLWK 913 (913)
Q Consensus 898 ~~Lasgs~DG~I~IWd 913 (913)
.+++||+....+++|+
T Consensus 342 ~~v~TGsy~n~frvf~ 357 (433)
T KOG1354|consen 342 SYVMTGSYNNVFRVFN 357 (433)
T ss_pred ceEecccccceEEEec
Confidence 9999999999999885
No 267
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.19 E-value=6.6e-10 Score=113.44 Aligned_cols=195 Identities=22% Similarity=0.240 Sum_probs=144.6
Q ss_pred CEEEEEEecCCCEEEEEeCCCcEEEEECCCCceee--EeccCCCCeEEEEECCC-CCEEEEEeCCCeEEEEEcCCCCcee
Q 002519 635 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKT--NLEEHSSLITDVRFSPS-MPRLATSSFDKTVRVWDADNPGYSL 711 (913)
Q Consensus 635 ~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~--~l~~h~~~V~~l~fspd-g~~Lasgs~Dg~V~Iwdl~~~~~~~ 711 (913)
...++.|++.+.-++++..+|.+.+-+.......+ +++.|.-.++...|+.. .+++++|++|+.+..||++.++..+
T Consensus 123 ~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i 202 (339)
T KOG0280|consen 123 EALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFI 202 (339)
T ss_pred eeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCccee
Confidence 45678899999999999999999976666554444 88999999999999754 4588999999999999999655544
Q ss_pred EE-eccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCC-CeeeEE--eeCCceEEEEecCC-CEEEEEEcCCeEEEEE
Q 002519 712 RT-FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN-GSCTRV--FKGGTAQMRFQPHL-GRYLAAAAENVVSILD 786 (913)
Q Consensus 712 ~~-~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~-~~~~~~--~~~~~~~v~~s~~~-~~ll~~~~dg~I~i~D 786 (913)
.. .+-|...|.+|.-+|....+|++|+.|-.|++||.++ ++.+.. ..+++..+.++|.. ..+++++.-+..+|.+
T Consensus 203 ~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~ 282 (339)
T KOG0280|consen 203 WHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNGAKILD 282 (339)
T ss_pred eecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHHhcCceEEE
Confidence 44 5679999999999998888999999999999999984 454433 34678888888865 3556666666677776
Q ss_pred CCCC--e---EEEEecCCCCCeEEEEEcCCCCEEEEEeC-C-eEE-EEECC
Q 002519 787 AETQ--A---CRLSLQGHTKPIDSVCWDPSGELLASVSE-D-SVR-VWTVG 829 (913)
Q Consensus 787 ~~t~--~---~~~~l~~h~~~V~sl~~spdg~~l~s~s~-d-~I~-vwdl~ 829 (913)
...+ + .....+.|.+-+..-.|.....+|++|+- | .++ +|-.-
T Consensus 283 ~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~ 333 (339)
T KOG0280|consen 283 SSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHI 333 (339)
T ss_pred ecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeec
Confidence 6554 2 33445567666666677544457777652 3 433 66443
No 268
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.18 E-value=2.1e-08 Score=114.10 Aligned_cols=255 Identities=16% Similarity=0.116 Sum_probs=160.0
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCceeEEeccCCCCeEE
Q 002519 644 DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMS 723 (913)
Q Consensus 644 dg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~s 723 (913)
.+..|++++.++.|+.+|..+++.+..+.........+.. ++..+++++.|+.|..+|.++ ++.+...... ..+.+
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~ald~~t-G~~~W~~~~~-~~~~~ 139 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA--DGGLVFVGTEKGEVIALDAED-GKELWRAKLS-SEVLS 139 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE--cCCEEEEEcCCCEEEEEECCC-CcEeeeeccC-ceeec
Confidence 3568888889999999999999988776654432223333 467888889999999999987 5544443322 22222
Q ss_pred EEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeCCceEEEE------ecCCCEEEEEEcCCeEEEEECCCCeEEEEec
Q 002519 724 LDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRF------QPHLGRYLAAAAENVVSILDAETQACRLSLQ 797 (913)
Q Consensus 724 l~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~------s~~~~~ll~~~~dg~I~i~D~~t~~~~~~l~ 797 (913)
.-.. .++.+ +.++.++.|+.||.++++.+..++.....+.+ ...++.++++..++.+..+|.++++.+....
T Consensus 140 ~p~v-~~~~v-~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~~~~~g~v~ald~~tG~~~W~~~ 217 (377)
T TIGR03300 140 PPLV-ANGLV-VVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGVLVGFAGGKLVALDLQTGQPLWEQR 217 (377)
T ss_pred CCEE-ECCEE-EEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEEEEECCCCEEEEEEccCCCEeeeec
Confidence 1111 13434 46777999999999999988776543221100 0123577778888999999999998776543
Q ss_pred CCCC----C---eEEEEEcC--CCCEEEEEeCC-eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEEEEcCCe
Q 002519 798 GHTK----P---IDSVCWDP--SGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQS 867 (913)
Q Consensus 798 ~h~~----~---V~sl~~sp--dg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~ 867 (913)
.... . +..+.-+| .+..+++++.+ .++.||..+++ .+..... ...... ...+..|++++.+|.
T Consensus 218 ~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~---~~W~~~~--~~~~~p--~~~~~~vyv~~~~G~ 290 (377)
T TIGR03300 218 VALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGR---VLWKRDA--SSYQGP--AVDDNRLYVTDADGV 290 (377)
T ss_pred cccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCc---EEEeecc--CCccCc--eEeCCEEEEECCCCe
Confidence 2110 0 00010011 24456666666 99999998773 3333321 111112 234667888899999
Q ss_pred EEEEECCCCcEEEEc-ccC-CCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 002519 868 LELWNMSENKTMTLT-AHE-GLIAALAVSTETGYVASASHDKFVKLWK 913 (913)
Q Consensus 868 I~iwd~~~~~~~~~~-~h~-~~V~~l~~spdg~~Lasgs~DG~I~IWd 913 (913)
|+.+|..+++.+... ... ..+..... .+.+|++++.||.|++||
T Consensus 291 l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d 336 (377)
T TIGR03300 291 VVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLS 336 (377)
T ss_pred EEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEE
Confidence 999999999876322 211 12222222 356888899999999875
No 269
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.17 E-value=1.2e-09 Score=128.14 Aligned_cols=194 Identities=13% Similarity=0.206 Sum_probs=151.1
Q ss_pred CCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCC----eEEEEECCCCCEEEEEeCCCeEEEEEcCCCC
Q 002519 633 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSL----ITDVRFSPSMPRLATSSFDKTVRVWDADNPG 708 (913)
Q Consensus 633 ~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~----V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~ 708 (913)
.+.|....+.-+.+.++.++.+..+.+||...+.....+...... ..-+-++++.-++++|+.-+.|.+|+.....
T Consensus 87 s~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn 166 (967)
T KOG0974|consen 87 SDWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDN 166 (967)
T ss_pred cccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccC
Confidence 345555667777889999999999999999877766665543322 2223346677789999999999999998534
Q ss_pred ceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEE----eeCCceEEEEecCCCEEEEEEcCCeEEE
Q 002519 709 YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV----FKGGTAQMRFQPHLGRYLAAAAENVVSI 784 (913)
Q Consensus 709 ~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~----~~~~~~~v~~s~~~~~ll~~~~dg~I~i 784 (913)
... .+.+|.+.|.++.|+-+|. +++++++|.++|+|++++.+.... +...+..+++.+. .+++++.|-+.++
T Consensus 167 ~p~-~l~GHeG~iF~i~~s~dg~-~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrv 242 (967)
T KOG0974|consen 167 KPI-RLKGHEGSIFSIVTSLDGR-YIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRV 242 (967)
T ss_pred Ccc-eecccCCceEEEEEccCCc-EEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEE
Confidence 433 6889999999999999876 566999999999999999876651 2334566778887 9999999999999
Q ss_pred EECCCCeEEEEecCCC-CCeEEEEEcCCCCEEEEEeCC-eEEEEECCCC
Q 002519 785 LDAETQACRLSLQGHT-KPIDSVCWDPSGELLASVSED-SVRVWTVGSG 831 (913)
Q Consensus 785 ~D~~t~~~~~~l~~h~-~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~ 831 (913)
|+.+.. .+..+.+|. +.|..++..++...+++++.| .+++||+...
T Consensus 243 W~~~~~-~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 243 WGVNGT-QLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred Eecccc-eehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence 966543 333677775 469999999998899999999 9999998654
No 270
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.15 E-value=3.2e-08 Score=106.77 Aligned_cols=285 Identities=14% Similarity=0.144 Sum_probs=185.8
Q ss_pred CCCCcccccccCc-cceeeeEeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECC-CCceeeEeccCCCCeEEEEECCC
Q 002519 609 DAGGRGMDVSQGF-SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTD-TLKSKTNLEEHSSLITDVRFSPS 686 (913)
Q Consensus 609 d~~~~~~~~~~~~-~~~~~~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~-~~~~~~~l~~h~~~V~~l~fspd 686 (913)
.+.+++|....+- +|+.+-.+.+|-..-.-+ .++..+....||.=.||.++ .|+-++...... .-.+-..+.|
T Consensus 203 GtrGklWis~d~g~tFeK~vdl~~~vS~PmIV----~~RvYFlsD~eG~GnlYSvdldGkDlrrHTnFt-dYY~R~~nsD 277 (668)
T COG4946 203 GTRGKLWISSDGGKTFEKFVDLDGNVSSPMIV----GERVYFLSDHEGVGNLYSVDLDGKDLRRHTNFT-DYYPRNANSD 277 (668)
T ss_pred CccceEEEEecCCcceeeeeecCCCcCCceEE----cceEEEEecccCccceEEeccCCchhhhcCCch-hccccccCCC
Confidence 3445566555543 777777777665432222 23334445567666666554 333322221111 1223344668
Q ss_pred CCEEEEEeCCCeEEEEEcCCCCceeEEec-----cCC-----CCeEEEE-EcCCCCeEEEEEeCCCcEEEEEcCCCeeeE
Q 002519 687 MPRLATSSFDKTVRVWDADNPGYSLRTFM-----GHS-----ASVMSLD-FHPNKDDLICSCDGDGEIRYWSINNGSCTR 755 (913)
Q Consensus 687 g~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~-----~h~-----~~V~sl~-fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~ 755 (913)
|++|+..- .|.|.+||.++.......+. ... .+..-+. |++-...+++..+ -|...|.+...+-.+.
T Consensus 278 GkrIvFq~-~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VS-RGkaFi~~~~~~~~iq 355 (668)
T COG4946 278 GKRIVFQN-AGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVS-RGKAFIMRPWDGYSIQ 355 (668)
T ss_pred CcEEEEec-CCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEe-cCcEEEECCCCCeeEE
Confidence 88877653 57799999987432111111 000 1111111 4444444665555 5778888777665554
Q ss_pred Ee-eCCceEEEEecCCCEEEEEEcCC-eEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCC
Q 002519 756 VF-KGGTAQMRFQPHLGRYLAAAAEN-VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGS 832 (913)
Q Consensus 756 ~~-~~~~~~v~~s~~~~~ll~~~~dg-~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~ 832 (913)
.- ++++.-..+..+...++.+..|| .+-|||.++++... +...-+.|.++..+++|++++.+.+. .|.++|+.++.
T Consensus 356 v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr-~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngn 434 (668)
T COG4946 356 VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKR-IEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGN 434 (668)
T ss_pred cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEE-eeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCC
Confidence 43 34555666777777888888888 89999999887554 44456789999999999999988888 99999998873
Q ss_pred CCceEEEeecCCCceEEEEEeCCCCEEEEEEcCC----eEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEe
Q 002519 833 EGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ----SLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASAS 904 (913)
Q Consensus 833 ~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg----~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs 904 (913)
....-+...+-|+.+.|||++++|+.+--+| .|+|||+.+++........+.=.+-+|.||+++|.--+
T Consensus 435 ---v~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 435 ---VRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred ---eeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEEe
Confidence 3333334467799999999999999987776 89999999999987776666667788999999876544
No 271
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.15 E-value=1.4e-09 Score=121.01 Aligned_cols=201 Identities=15% Similarity=0.191 Sum_probs=145.3
Q ss_pred CCCCEEEEEeCCCeEEEEEcCCCCceeEEecc---CCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCe-eeEEeeCC
Q 002519 685 PSMPRLATSSFDKTVRVWDADNPGYSLRTFMG---HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS-CTRVFKGG 760 (913)
Q Consensus 685 pdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~---h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~-~~~~~~~~ 760 (913)
|-..++|....||.+||||... +.....|.. -.+..++..| .+.-+. +.+.. .-
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~-~~~~~e~~p~~~~s~t~~~~~w--------------------~L~~~~s~~k~~-~~ 60 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAK-NQLQQEFAPIASLSGTCTYTKW--------------------GLSADYSPMKWL-SL 60 (541)
T ss_pred chhheEeecCCCCeEEEEEccC-ceeeeeeccchhccCcceeEEE--------------------EEEeccchHHHH-hH
Confidence 4456889999999999999987 333332221 1223333333 321110 00000 00
Q ss_pred ceEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEec--CCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceE
Q 002519 761 TAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQ--GHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECV 837 (913)
Q Consensus 761 ~~~v~~s~~~~~ll~~~~dg~I~i~D~~t~~~~~~l~--~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i 837 (913)
......+.+...++.|...|.|.+|++..++....+. .|.+.|+++.++.+-..|.+++.| .+..|+.... ..+
T Consensus 61 ~~~~~~s~~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~---~~~ 137 (541)
T KOG4547|consen 61 EKAKKASLDTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEK---VII 137 (541)
T ss_pred HHHhhccCCceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccc---eee
Confidence 0001112233456777778999999999998888776 589999999999998999999999 9999999765 777
Q ss_pred EEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCC-----CCEEEE-EeCCCcEE
Q 002519 838 HELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTE-----TGYVAS-ASHDKFVK 910 (913)
Q Consensus 838 ~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spd-----g~~Las-gs~DG~I~ 910 (913)
+.+.+....+.+++++||+..+++++ +.|++||+++++++ .+.+|.++|+++.|..+ |++|.+ +..+..|.
T Consensus 138 ~~~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~ 215 (541)
T KOG4547|consen 138 RIWKEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGIT 215 (541)
T ss_pred eeeccCCCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeecccccccee
Confidence 88888888899999999999888876 58999999999988 89999999999999877 566554 44556677
Q ss_pred Ee
Q 002519 911 LW 912 (913)
Q Consensus 911 IW 912 (913)
+|
T Consensus 216 ~w 217 (541)
T KOG4547|consen 216 VW 217 (541)
T ss_pred EE
Confidence 77
No 272
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.15 E-value=6.3e-10 Score=113.86 Aligned_cols=237 Identities=17% Similarity=0.318 Sum_probs=161.3
Q ss_pred CCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCc-----eeeEeccCC------------CCeEEEEECCCCC--EEEE
Q 002519 632 STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK-----SKTNLEEHS------------SLITDVRFSPSMP--RLAT 692 (913)
Q Consensus 632 H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~-----~~~~l~~h~------------~~V~~l~fspdg~--~Las 692 (913)
..+.|+++.|...|.||++|...|.|.+|.-+... ....+.+|. ..|..|.|..++. .++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 45679999999999999999999999999765322 223344443 3588889876643 5777
Q ss_pred EeCCCeEEEEEcCCCCc------------------e-----------------------eEEe-ccCCCCeEEEEEcCCC
Q 002519 693 SSFDKTVRVWDADNPGY------------------S-----------------------LRTF-MGHSASVMSLDFHPNK 730 (913)
Q Consensus 693 gs~Dg~V~Iwdl~~~~~------------------~-----------------------~~~~-~~h~~~V~sl~fsp~~ 730 (913)
.+.|++|++|.+..... . .+.+ ..|...|.+|.|..|.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 77899999999865210 0 1111 3577778899999887
Q ss_pred CeEEEEEeCCCcEEEEEcCCCeee---EEee--------CCceEEEEecCC-CEEEEEEcCCeEEEEECCCCeE------
Q 002519 731 DDLICSCDGDGEIRYWSINNGSCT---RVFK--------GGTAQMRFQPHL-GRYLAAAAENVVSILDAETQAC------ 792 (913)
Q Consensus 731 ~~ll~sgs~Dg~I~iwdl~~~~~~---~~~~--------~~~~~v~~s~~~-~~ll~~~~dg~I~i~D~~t~~~------ 792 (913)
..+| + .+|-.|.+|+++-..-. ..++ .-+++..|+|.. ..+...++.|.|++.|++....
T Consensus 185 et~l-S-aDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~k 262 (460)
T COG5170 185 ETLL-S-ADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKK 262 (460)
T ss_pred heee-e-ccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchh
Confidence 7665 4 45888999998753211 1111 124556788875 4556677789999999984311
Q ss_pred EEE----------ecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCCceEEEeecCC------------Cc---e
Q 002519 793 RLS----------LQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNG------------NK---F 847 (913)
Q Consensus 793 ~~~----------l~~h~~~V~sl~~spdg~~l~s~s~d~I~vwdl~~~~~~~~i~~~~~~~------------~~---i 847 (913)
+.. +.+-...|..+.|+++|++|++-+.-+|+|||++... .++.++..|. .. -
T Consensus 263 lfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm~k--~pikTi~~h~~l~~~l~d~YEnDaifdk 340 (460)
T COG5170 263 LFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMAK--NPIKTIPMHCDLMDELNDVYENDAIFDK 340 (460)
T ss_pred hhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccceEEEEeccccc--CCceeechHHHHHHHHHhhhhccceeee
Confidence 111 1122346788999999999998888899999998653 4455443321 11 2
Q ss_pred EEEEEeCCCCEEEEEEcCCeEEEEE
Q 002519 848 HSCVFHPTYPSLLVIGCYQSLELWN 872 (913)
Q Consensus 848 ~~l~~sp~g~~l~s~s~dg~I~iwd 872 (913)
..|.|+-+.+.+++|+..+..-||-
T Consensus 341 FeisfSgd~~~v~sgsy~NNfgiyp 365 (460)
T COG5170 341 FEISFSGDDKHVLSGSYSNNFGIYP 365 (460)
T ss_pred EEEEecCCcccccccccccceeeec
Confidence 3567888888888888777666665
No 273
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.14 E-value=1.6e-08 Score=111.14 Aligned_cols=269 Identities=14% Similarity=0.191 Sum_probs=184.0
Q ss_pred EEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeC-----------CCeEEEEEc
Q 002519 636 VICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF-----------DKTVRVWDA 704 (913)
Q Consensus 636 V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~-----------Dg~V~Iwdl 704 (913)
-+-+.|||-|+||+|-..-| |.+|--.+...+..|. |. .|.-+.|||+.+||+|-+. ...++|||+
T Consensus 213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI 289 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-HP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDI 289 (698)
T ss_pred eeeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-CC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEEc
Confidence 46689999999999987655 8899877777666664 43 4899999999999998763 257999999
Q ss_pred CCCCceeEEeccC--CCCe-EEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEE--e-eCCceEEEEecCCCEEEEEEc
Q 002519 705 DNPGYSLRTFMGH--SASV-MSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV--F-KGGTAQMRFQPHLGRYLAAAA 778 (913)
Q Consensus 705 ~~~~~~~~~~~~h--~~~V-~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~--~-~~~~~~v~~s~~~~~ll~~~~ 778 (913)
.+ +...+.|... ...+ .-+.|+.|++++. +-....|.||+..+...+.. + ..++....|+|.+..|+.-..
T Consensus 290 ~t-G~lkrsF~~~~~~~~~WP~frWS~DdKy~A--rm~~~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtp 366 (698)
T KOG2314|consen 290 AT-GLLKRSFPVIKSPYLKWPIFRWSHDDKYFA--RMTGNSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTP 366 (698)
T ss_pred cc-cchhcceeccCCCccccceEEeccCCceeE--EeccceEEEEecCceeeecccccCCccccCcccCCCcceEEEEcc
Confidence 98 6666666542 2222 2368998877544 33347899999876443322 2 235667889999776665443
Q ss_pred C-----CeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-----------eEEEEECCCCCCCceEEEeec
Q 002519 779 E-----NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-----------SVRVWTVGSGSEGECVHELSC 842 (913)
Q Consensus 779 d-----g~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-----------~I~vwdl~~~~~~~~i~~~~~ 842 (913)
. .++.+..+.++..+++..-|.-.-..+.|-.+|.+|+.--+. .+.|+.++...-....-.+
T Consensus 367 e~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~vel-- 444 (698)
T KOG2314|consen 367 ETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVEL-- 444 (698)
T ss_pred cccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeec--
Confidence 2 367788888877777665555444567788889888754321 4667777654332222222
Q ss_pred CCCceEEEEEeCCCCEEEEEEcC---CeEEEEECCC-CcEEEE--cccCCCeEEEEEeCCCCEEEEEe---CCCcEEEeC
Q 002519 843 NGNKFHSCVFHPTYPSLLVIGCY---QSLELWNMSE-NKTMTL--TAHEGLIAALAVSTETGYVASAS---HDKFVKLWK 913 (913)
Q Consensus 843 ~~~~i~~l~~sp~g~~l~s~s~d---g~I~iwd~~~-~~~~~~--~~h~~~V~~l~~spdg~~Lasgs---~DG~I~IWd 913 (913)
...|...+|-|.|+.+++.+.. .+|.+|.+.+ .....+ .-.....+.+.|+|.|++++.+. ..|.+.++|
T Consensus 445 -ke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D 523 (698)
T KOG2314|consen 445 -KESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKKFANTVFWSPKGRFVVVAALVSRRGDLEFYD 523 (698)
T ss_pred -chheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcccccceEEEcCCCcEEEEEEecccccceEEEe
Confidence 5578899999999998888765 4899998873 222211 11235678899999999988765 456777765
No 274
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.13 E-value=5.7e-08 Score=120.54 Aligned_cols=280 Identities=16% Similarity=0.222 Sum_probs=184.5
Q ss_pred cCCCCEEEEEEecCCCEEEEEeCCCcEEEE----ECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCC
Q 002519 631 ASTSKVICCHFSSDGKLLATGGHDKKAVLW----HTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN 706 (913)
Q Consensus 631 ~H~~~V~~l~fspdg~~Lasgs~Dg~V~vw----d~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~ 706 (913)
...+.|.++.|-++...|+.+..+|.|.++ +..+. .+.....-...|.+++||||+..|+..+.+++|.+.+.+=
T Consensus 73 ~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~-~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~f 151 (928)
T PF04762_consen 73 DPNDKIVSFQYLADSESLCIALASGDIILVREDPDPDED-EIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDF 151 (928)
T ss_pred CCCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCc-eeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccc
Confidence 346789999999999999999999999999 44432 2333334567899999999999999999999888764320
Q ss_pred ------------CC----------ceeEEecc------------------------CCCCeEEEEEcCCCCeEEEEEe--
Q 002519 707 ------------PG----------YSLRTFMG------------------------HSASVMSLDFHPNKDDLICSCD-- 738 (913)
Q Consensus 707 ------------~~----------~~~~~~~~------------------------h~~~V~sl~fsp~~~~ll~sgs-- 738 (913)
.+ +.-..|.| ..+.-..|+|-.||.++.++.-
T Consensus 152 d~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~ 231 (928)
T PF04762_consen 152 DPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEP 231 (928)
T ss_pred eEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEc
Confidence 00 00000100 2334567999999987665543
Q ss_pred CC---CcEEEEEcCCCeeeEEee---CCceEEEEecCCCEEEEEEc---CCeEEEEECCCC---eEEEEecCCCCCeEEE
Q 002519 739 GD---GEIRYWSINNGSCTRVFK---GGTAQMRFQPHLGRYLAAAA---ENVVSILDAETQ---ACRLSLQGHTKPIDSV 806 (913)
Q Consensus 739 ~D---g~I~iwdl~~~~~~~~~~---~~~~~v~~s~~~~~ll~~~~---dg~I~i~D~~t~---~~~~~l~~h~~~V~sl 806 (913)
.+ ..||||+-+ |....+.+ +-...++|.|.|+.+++.-. ...|.+|..+.. +....+......|..+
T Consensus 232 ~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l 310 (928)
T PF04762_consen 232 ETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIEL 310 (928)
T ss_pred CCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEE
Confidence 22 579999976 55444332 23456899999988877765 235666654332 2222222345679999
Q ss_pred EEcCCCCEEEEEeCCeEEEEECCCCCCCceEEEeecC-CCceEEEEEeCCCC-EEEEEEcCCeEEEEEC----CCC----
Q 002519 807 CWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCN-GNKFHSCVFHPTYP-SLLVIGCYQSLELWNM----SEN---- 876 (913)
Q Consensus 807 ~~spdg~~l~s~s~d~I~vwdl~~~~~~~~i~~~~~~-~~~i~~l~~sp~g~-~l~s~s~dg~I~iwd~----~~~---- 876 (913)
.|+.|+.+|+....|.|.+|...+. ......++... ...+..+.|+|... .|.+.+.++.+..+++ ..+
T Consensus 311 ~Wn~ds~iLAv~~~~~vqLWt~~NY-HWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~ 389 (928)
T PF04762_consen 311 AWNSDSEILAVWLEDRVQLWTRSNY-HWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSS 389 (928)
T ss_pred EECCCCCEEEEEecCCceEEEeeCC-EEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCC
Confidence 9999999999998889999998654 22233333322 23345588998654 3555555565544332 211
Q ss_pred ------------cEEE----------------EcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 002519 877 ------------KTMT----------------LTAHEGLIAALAVSTETGYVASASHDKFVKLWK 913 (913)
Q Consensus 877 ------------~~~~----------------~~~h~~~V~~l~~spdg~~Lasgs~DG~I~IWd 913 (913)
..+. .......|.+++|++++..+++-..||.|.+|+
T Consensus 390 ~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~ 454 (928)
T PF04762_consen 390 PNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYE 454 (928)
T ss_pred ccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEE
Confidence 1111 111457899999999998899999999999884
No 275
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.10 E-value=5.7e-08 Score=122.72 Aligned_cols=232 Identities=11% Similarity=0.106 Sum_probs=154.6
Q ss_pred EEEEECCC-CCEEEEEeCCCeEEEEEcCCCCceeEEecc--C------------CCCeEEEEEcCCCCeEEEEEeCCCcE
Q 002519 679 TDVRFSPS-MPRLATSSFDKTVRVWDADNPGYSLRTFMG--H------------SASVMSLDFHPNKDDLICSCDGDGEI 743 (913)
Q Consensus 679 ~~l~fspd-g~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~--h------------~~~V~sl~fsp~~~~ll~sgs~Dg~I 743 (913)
..++++++ +.++++-+.++.|++||... ..+..+.+ . -.....|++.++++.++++-...+.|
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G--~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~I 648 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDG--NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHAL 648 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCC--CEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceE
Confidence 46788775 55666667788999999864 33333322 1 12357799998877666555566889
Q ss_pred EEEEcCCCeeeEEee-------------------CCceEEEEecCCCEEEE-EEcCCeEEEEECCCCeEEEEecCC----
Q 002519 744 RYWSINNGSCTRVFK-------------------GGTAQMRFQPHLGRYLA-AAAENVVSILDAETQACRLSLQGH---- 799 (913)
Q Consensus 744 ~iwdl~~~~~~~~~~-------------------~~~~~v~~s~~~~~ll~-~~~dg~I~i~D~~t~~~~~~l~~h---- 799 (913)
+++|+.++....... .....++++++++.+++ ...++.|++||..++.... +.+.
T Consensus 649 r~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~-~~G~G~~~ 727 (1057)
T PLN02919 649 REIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRV-FSGDGYER 727 (1057)
T ss_pred EEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEE-EecCCccc
Confidence 999988765432211 12346889996655554 4557899999998875432 2111
Q ss_pred -----------CCCeEEEEEcCCCCEEEEEe-CC-eEEEEECCCCCCCceE----------EEeecC--------CCceE
Q 002519 800 -----------TKPIDSVCWDPSGELLASVS-ED-SVRVWTVGSGSEGECV----------HELSCN--------GNKFH 848 (913)
Q Consensus 800 -----------~~~V~sl~~spdg~~l~s~s-~d-~I~vwdl~~~~~~~~i----------~~~~~~--------~~~i~ 848 (913)
-.....|+|+|+++.|+++. .+ .|++||+.++...... ..+... .....
T Consensus 728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~ 807 (1057)
T PLN02919 728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPL 807 (1057)
T ss_pred cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCc
Confidence 12345799999998555544 44 9999999765321000 000000 11235
Q ss_pred EEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEcccC--------------CCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 002519 849 SCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHE--------------GLIAALAVSTETGYVASASHDKFVKLWK 913 (913)
Q Consensus 849 ~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~h~--------------~~V~~l~~spdg~~Lasgs~DG~I~IWd 913 (913)
.++++++|..+++-..++.|++||..++.+..+.+.. .....|+++++|+++++-+.+++|++||
T Consensus 808 Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid 886 (1057)
T PLN02919 808 GVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLD 886 (1057)
T ss_pred eeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEE
Confidence 7889999998888888899999999988776554321 2577899999999888888999999996
No 276
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.09 E-value=8.8e-08 Score=121.05 Aligned_cols=239 Identities=13% Similarity=0.149 Sum_probs=159.9
Q ss_pred EEEEEecC-CCEEEEEeCCCcEEEEECCCCceeeEecc-C-------------CCCeEEEEECCCCCEEEEEeC-CCeEE
Q 002519 637 ICCHFSSD-GKLLATGGHDKKAVLWHTDTLKSKTNLEE-H-------------SSLITDVRFSPSMPRLATSSF-DKTVR 700 (913)
Q Consensus 637 ~~l~fspd-g~~Lasgs~Dg~V~vwd~~~~~~~~~l~~-h-------------~~~V~~l~fspdg~~Lasgs~-Dg~V~ 700 (913)
..++++++ +.++++-..++.|++||... ..+..+.+ . -.....|++++++..|+++.. .+.|+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G-~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir 649 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDG-NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR 649 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCC-CEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence 46788874 56777777788999999864 44444332 1 123578999998887766654 57899
Q ss_pred EEEcCCCCceeEEeccC-----------------CCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEee-----
Q 002519 701 VWDADNPGYSLRTFMGH-----------------SASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK----- 758 (913)
Q Consensus 701 Iwdl~~~~~~~~~~~~h-----------------~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~----- 758 (913)
++|+.+ + .+.++.+. -..-.+|+|+|+++.++++...++.|++||..++.......
T Consensus 650 ~id~~~-~-~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~ 727 (1057)
T PLN02919 650 EIDFVN-E-TVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYER 727 (1057)
T ss_pred EEecCC-C-EEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccc
Confidence 999876 2 23333210 11235799999777788788889999999998775432110
Q ss_pred ------------CCceEEEEecCCCEEEEEEc-CCeEEEEECCCCeEEEEecC-------------C--------CCCeE
Q 002519 759 ------------GGTAQMRFQPHLGRYLAAAA-ENVVSILDAETQACRLSLQG-------------H--------TKPID 804 (913)
Q Consensus 759 ------------~~~~~v~~s~~~~~ll~~~~-dg~I~i~D~~t~~~~~~l~~-------------h--------~~~V~ 804 (913)
.....++++++++.++++.. ++.|++||+.++.......+ . -..-.
T Consensus 728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~ 807 (1057)
T PLN02919 728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPL 807 (1057)
T ss_pred cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCc
Confidence 12345889999886665554 68999999987653221100 0 01235
Q ss_pred EEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEE----------eecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 002519 805 SVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHE----------LSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNM 873 (913)
Q Consensus 805 sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~----------~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~ 873 (913)
+++|+++|.++++...+ .|++||..++........ ....-.....++++++|+.+++-+.++.|++||+
T Consensus 808 Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~ 887 (1057)
T PLN02919 808 GVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDL 887 (1057)
T ss_pred eeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEEC
Confidence 88999999987777777 999999976521111100 0111224678899999998888788899999999
Q ss_pred CCCcE
Q 002519 874 SENKT 878 (913)
Q Consensus 874 ~~~~~ 878 (913)
.+++.
T Consensus 888 ~~~~~ 892 (1057)
T PLN02919 888 NKGEA 892 (1057)
T ss_pred CCCcc
Confidence 88764
No 277
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.02 E-value=8.6e-08 Score=109.67 Aligned_cols=190 Identities=11% Similarity=0.088 Sum_probs=129.7
Q ss_pred CEEEEEEecCCCE-EEEEeCC---CcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEe-CC--CeEEEEEcCCC
Q 002519 635 KVICCHFSSDGKL-LATGGHD---KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSS-FD--KTVRVWDADNP 707 (913)
Q Consensus 635 ~V~~l~fspdg~~-Lasgs~D---g~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs-~D--g~V~Iwdl~~~ 707 (913)
.+....|+|||+. ++..+.+ ..|+++|+.+++...... ..+.+....|+|||+.|+... .+ ..|.++|+.+
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~- 266 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNT- 266 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCC-
Confidence 7788999999984 6654443 469999998876555443 556677889999998776543 33 4677778875
Q ss_pred CceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCC--cEEEEEcCCCeeeEEeeCCceEEEEecCCCEEEEEEcC------
Q 002519 708 GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDG--EIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAE------ 779 (913)
Q Consensus 708 ~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg--~I~iwdl~~~~~~~~~~~~~~~v~~s~~~~~ll~~~~d------ 779 (913)
+. .+.+..+........|+|||+.++++....+ .|+++|+.+++..+....+.....|+|+++.++.....
T Consensus 267 g~-~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~~~~~~SPDG~~Ia~~~~~~~~~~~ 345 (419)
T PRK04043 267 KT-LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGKNNSSVSTYKNYIVYSSRETNNEFG 345 (419)
T ss_pred Cc-EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCCcCceECCCCCEEEEEEcCCCcccC
Confidence 33 3444444443445789999998887776554 58888888877655443332346899999998887764
Q ss_pred ---CeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC----eEEEEECC
Q 002519 780 ---NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED----SVRVWTVG 829 (913)
Q Consensus 780 ---g~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d----~I~vwdl~ 829 (913)
..|.++|+.++.... +... .......|+|||+.|+..... .+.++++.
T Consensus 346 ~~~~~I~v~d~~~g~~~~-LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~ 400 (419)
T PRK04043 346 KNTFNLYLISTNSDYIRR-LTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLN 400 (419)
T ss_pred CCCcEEEEEECCCCCeEE-CCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEEEecC
Confidence 268888998886433 3322 233468899999977665533 35666664
No 278
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.01 E-value=1.4e-09 Score=132.51 Aligned_cols=208 Identities=17% Similarity=0.284 Sum_probs=164.6
Q ss_pred CCEEEEEeCCCeEEEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeC----Cce
Q 002519 687 MPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG----GTA 762 (913)
Q Consensus 687 g~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~----~~~ 762 (913)
+..+..+..++.+.-|..+..+ ..++.+-..|.++.-+|....+| +|+.||.|++|....+..+..++. .+.
T Consensus 2180 s~~~~~~n~~~~~~tq~~~~~~---~~~k~~v~~v~r~~sHp~~~~Yl-tgs~dgsv~~~~w~~~~~v~~~rt~g~s~vt 2255 (2439)
T KOG1064|consen 2180 SNRFTPSNLPWLGSTQTSRGAS---VMIKHPVENVRRMTSHPSDPYYL-TGSQDGSVRMFEWGHGQQVVCFRTAGNSRVT 2255 (2439)
T ss_pred cccCCcccCCccccceecccce---eEeecccCceeeecCCCCCceEE-ecCCCceEEEEeccCCCeEEEeeccCcchhh
Confidence 3445555556666667665422 23334567788888899877666 999999999999998887777653 345
Q ss_pred EEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeC---C-eEEEEECCCCCCCceEE
Q 002519 763 QMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSE---D-SVRVWTVGSGSEGECVH 838 (913)
Q Consensus 763 ~v~~s~~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~---d-~I~vwdl~~~~~~~~i~ 838 (913)
.+.|+..|+.+-++..||.+.+|.+. .++....+.|......+.|.. ..+++.+. + .+.+||........+++
T Consensus 2256 r~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~ 2332 (2439)
T KOG1064|consen 2256 RSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH 2332 (2439)
T ss_pred hhhhcccCCceeeeccCCceeecccC-CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee
Confidence 67899999999999999999999987 677778888999999999985 55665542 3 89999987766666776
Q ss_pred EeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 002519 839 ELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 913 (913)
Q Consensus 839 ~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~Lasgs~DG~I~IWd 913 (913)
.+|...++++++.|.-..|++|+.+|.|+|||++-.+.+ .+.. ++ ...++++|+..|.|+||+
T Consensus 2333 --~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~ 2396 (2439)
T KOG1064|consen 2333 --TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWR 2396 (2439)
T ss_pred --eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEE
Confidence 889999999999999999999999999999999887765 2222 33 556899999999999996
No 279
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.01 E-value=2.6e-07 Score=105.82 Aligned_cols=224 Identities=12% Similarity=0.105 Sum_probs=144.2
Q ss_pred CcEEEEECCCCceeeEeccCCCCeEEEEECCCCCE-EEEEeCC---CeEEEEEcCCCCceeEEeccCCCCeEEEEEcCCC
Q 002519 655 KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPR-LATSSFD---KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNK 730 (913)
Q Consensus 655 g~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~-Lasgs~D---g~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~ 730 (913)
..|.+-|.+... .+.+.... .+....|+||++. ++..+.+ ..|+++|+.+ +.. +.+....+.+....|+|||
T Consensus 169 ~~l~~~d~dg~~-~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~t-g~~-~~lt~~~g~~~~~~~SPDG 244 (419)
T PRK04043 169 SNIVLADYTLTY-QKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYT-GKK-EKIASSQGMLVVSDVSKDG 244 (419)
T ss_pred ceEEEECCCCCc-eeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCC-CcE-EEEecCCCcEEeeEECCCC
Confidence 345555554333 33333333 7889999999985 6655443 4688899976 333 2333345556678899999
Q ss_pred CeEEEEEeCC--CcEEEEEcCCCeeeEEeeCC--ceEEEEecCCCEEEEEEcC-C--eEEEEECCCCeEEEEecCCCCCe
Q 002519 731 DDLICSCDGD--GEIRYWSINNGSCTRVFKGG--TAQMRFQPHLGRYLAAAAE-N--VVSILDAETQACRLSLQGHTKPI 803 (913)
Q Consensus 731 ~~ll~sgs~D--g~I~iwdl~~~~~~~~~~~~--~~~v~~s~~~~~ll~~~~d-g--~I~i~D~~t~~~~~~l~~h~~~V 803 (913)
+.++++.+.+ ..|+++|+.+++........ .....|+|++..++..+.. + .|+++|+.+++....... ...
T Consensus 245 ~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~~- 322 (419)
T PRK04043 245 SKLLLTMAPKGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GKN- 322 (419)
T ss_pred CEEEEEEccCCCcEEEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CCc-
Confidence 9888776655 46888888887654433322 3456899999988887753 2 788889988876443321 111
Q ss_pred EEEEEcCCCCEEEEEeC--------C--eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEEEEcCC---eEEE
Q 002519 804 DSVCWDPSGELLASVSE--------D--SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ---SLEL 870 (913)
Q Consensus 804 ~sl~~spdg~~l~s~s~--------d--~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg---~I~i 870 (913)
...|+|||++|+..+. + .|.+.|+.++.. ..+... .......|+|||+.|+....++ .|.+
T Consensus 323 -~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~----~~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~ 396 (419)
T PRK04043 323 -NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI----RRLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGI 396 (419)
T ss_pred -CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe----EECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEE
Confidence 2489999997776653 2 577778766532 222222 2233578999999988877653 5778
Q ss_pred EECCCCcEEEEcccCCCeEE
Q 002519 871 WNMSENKTMTLTAHEGLIAA 890 (913)
Q Consensus 871 wd~~~~~~~~~~~h~~~V~~ 890 (913)
+++.......+....+.|..
T Consensus 397 ~~l~g~~~~~l~~~~g~~~~ 416 (419)
T PRK04043 397 IRLNYNKSFLFPLKVGKIQS 416 (419)
T ss_pred EecCCCeeEEeecCCCccCC
Confidence 88877766666554444443
No 280
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.00 E-value=7.2e-07 Score=110.87 Aligned_cols=257 Identities=14% Similarity=0.198 Sum_probs=166.9
Q ss_pred EeecCCCCEEEEEEecCCCEEEEEeC---C---CcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeC---CCe
Q 002519 628 SVRASTSKVICCHFSSDGKLLATGGH---D---KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF---DKT 698 (913)
Q Consensus 628 ~l~~H~~~V~~l~fspdg~~Lasgs~---D---g~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~---Dg~ 698 (913)
.+. +.+.-..|+|-.||.++|+.+. + ..|+||+-+ |....+-+.-.+--.+++|.|.|++||+... ...
T Consensus 205 ~~s-~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~ 282 (928)
T PF04762_consen 205 KLS-WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHD 282 (928)
T ss_pred ccc-cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcE
Confidence 344 6677889999999999999875 2 579999976 6666555555555668999999999999865 345
Q ss_pred EEEEEcCCCCceeEEe----ccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEE----eeC--CceEEEEec
Q 002519 699 VRVWDADNPGYSLRTF----MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV----FKG--GTAQMRFQP 768 (913)
Q Consensus 699 V~Iwdl~~~~~~~~~~----~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~----~~~--~~~~v~~s~ 768 (913)
|.+|.-+ |.....| ......|..|.|++++.-|. ..-.|. |.+|-..+...-.+ +.. ....+.|++
T Consensus 283 VvFfErN--GLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLA-v~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdp 358 (928)
T PF04762_consen 283 VVFFERN--GLRHGEFTLRFDPEEEKVIELAWNSDSEILA-VWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDP 358 (928)
T ss_pred EEEEecC--CcEeeeEecCCCCCCceeeEEEECCCCCEEE-EEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECC
Confidence 6777654 2222222 23456899999999977444 444444 99999887653221 221 234488888
Q ss_pred CCCE-EEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEc----CCCC-EEEEEeCCeEEEEECCCCCCC--ceEEEe
Q 002519 769 HLGR-YLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWD----PSGE-LLASVSEDSVRVWTVGSGSEG--ECVHEL 840 (913)
Q Consensus 769 ~~~~-ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~s----pdg~-~l~s~s~d~I~vwdl~~~~~~--~~i~~~ 840 (913)
.... +.+.+.++.+.+++.. ..++.+ |+.. .+++...+.+++-.++....+ -+...+
T Consensus 359 e~p~~L~v~t~~g~~~~~~~~---------------~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l 423 (928)
T PF04762_consen 359 EKPLRLHVLTSNGQYEIYDFA---------------WDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYEL 423 (928)
T ss_pred CCCCEEEEEecCCcEEEEEEE---------------EEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEE
Confidence 7654 5555555766665532 111222 2222 444444447888877765333 333444
Q ss_pred ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE---------EEc----------ccCCCeEEEEEeCCCCEEE
Q 002519 841 SCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM---------TLT----------AHEGLIAALAVSTETGYVA 901 (913)
Q Consensus 841 ~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~---------~~~----------~h~~~V~~l~~spdg~~La 901 (913)
.. ...|..++|++++..+++...||.|.+|........ .+. .....+..++|..+..+++
T Consensus 424 ~~-~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 (928)
T PF04762_consen 424 EL-PSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLV 502 (928)
T ss_pred cC-CCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEE
Confidence 44 568999999999998999999999999985432211 111 1234578888888877666
Q ss_pred EEeCC
Q 002519 902 SASHD 906 (913)
Q Consensus 902 sgs~D 906 (913)
....+
T Consensus 503 ~~~~~ 507 (928)
T PF04762_consen 503 LSDSD 507 (928)
T ss_pred EEecC
Confidence 66554
No 281
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.99 E-value=5.5e-08 Score=110.53 Aligned_cols=214 Identities=14% Similarity=0.156 Sum_probs=157.3
Q ss_pred cccccCccceeeeEeecCCCCEEEEEEecCC------------CEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEE
Q 002519 615 MDVSQGFSFKEANSVRASTSKVICCHFSSDG------------KLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVR 682 (913)
Q Consensus 615 ~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg------------~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~ 682 (913)
..+.+..+++.+..++-|...|+.|.|.|-. -+||++...|.|.|||+..+..+..+..|.++|.+++
T Consensus 37 V~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~ 116 (1062)
T KOG1912|consen 37 VSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLC 116 (1062)
T ss_pred EEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhhee
Confidence 3444556788999999999999999998622 2678888899999999999999999999999999999
Q ss_pred ECC---CC-CEEEEEeCCCeEEEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCC-------
Q 002519 683 FSP---SM-PRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG------- 751 (913)
Q Consensus 683 fsp---dg-~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~------- 751 (913)
|-+ +. ..|+.-....+|.+|+.++ +..+..+........|+.+.|-+.+-++.-+..|.|.+-+.-..
T Consensus 117 W~~~rd~Srd~LlaIh~ss~lvLwntdt-G~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pg 195 (1062)
T KOG1912|consen 117 WVPARDDSRDVLLAIHGSSTLVLWNTDT-GEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPG 195 (1062)
T ss_pred eeeccCcchheeEEecCCcEEEEEEccC-CceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCc
Confidence 965 33 3566667788999999998 55555555555667779999976666656666777777664321
Q ss_pred eeeEEeeC--------------------C--------ceEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCe
Q 002519 752 SCTRVFKG--------------------G--------TAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPI 803 (913)
Q Consensus 752 ~~~~~~~~--------------------~--------~~~v~~s~~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V 803 (913)
+....-.. . ...++|+|.-+.++.......+.|+|++-..++..+.-..+.+
T Consensus 196 k~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~a 275 (1062)
T KOG1912|consen 196 KEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGA 275 (1062)
T ss_pred eeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCc
Confidence 11111000 0 0124678888888888889999999999888888877667767
Q ss_pred EEEEEcCCCC--EEEEEeCC-eEEEEECC
Q 002519 804 DSVCWDPSGE--LLASVSED-SVRVWTVG 829 (913)
Q Consensus 804 ~sl~~spdg~--~l~s~s~d-~I~vwdl~ 829 (913)
.-+.|-|+++ .|++...+ .+.||-.+
T Consensus 276 kfv~vlP~~~rd~LfclH~nG~ltirvrk 304 (1062)
T KOG1912|consen 276 KFVDVLPDPRRDALFCLHSNGRLTIRVRK 304 (1062)
T ss_pred ceeEeccCCCcceEEEEecCCeEEEEEee
Confidence 7777777765 67777766 77777543
No 282
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.98 E-value=2.3e-09 Score=130.84 Aligned_cols=223 Identities=14% Similarity=0.228 Sum_probs=166.1
Q ss_pred eecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEecc-CCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Q 002519 629 VRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE-HSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP 707 (913)
Q Consensus 629 l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~-h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~ 707 (913)
++.+-..|.++.-+|...+.+||+.||.|++|....+..+..++. ....|+.+.|+..|+.+..+..||.+.+|.+.
T Consensus 2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-- 2281 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-- 2281 (2439)
T ss_pred eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC--
Confidence 455667889999899889999999999999999998888777663 33789999999999999999999999999997
Q ss_pred CceeEEeccCCCCeEEEEEcCCCCeEEEEEe---CCCcEEEEEcCCCeeeEEeeCCceEEEEecCCCEEEEEEcCCeEEE
Q 002519 708 GYSLRTFMGHSASVMSLDFHPNKDDLICSCD---GDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSI 784 (913)
Q Consensus 708 ~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs---~Dg~I~iwdl~~~~~~~~~~~~~~~v~~s~~~~~ll~~~~dg~I~i 784 (913)
.+++.....|+....++.|.. .++++++ .++.+.+||..-...
T Consensus 2282 pk~~~s~qchnk~~~Df~Fi~---s~~~tag~s~d~~n~~lwDtl~~~~------------------------------- 2327 (2439)
T KOG1064|consen 2282 PKPYTSWQCHNKALSDFRFIG---SLLATAGRSSDNRNVCLWDTLLPPM------------------------------- 2327 (2439)
T ss_pred CcceeccccCCccccceeeee---hhhhccccCCCCCcccchhcccCcc-------------------------------
Confidence 567788888999999999875 3555543 356777777432110
Q ss_pred EECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEEEE
Q 002519 785 LDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIG 863 (913)
Q Consensus 785 ~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s 863 (913)
..++. ..|...++++++.|.-.+|++|+.+ .|++||++.. ..++.+.. ++ ...+|++++
T Consensus 2328 -----~s~v~--~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqr---ql~h~~~~---------~~-~~~~f~~~s 2387 (2439)
T KOG1064|consen 2328 -----NSLVH--TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQR---QLRHTFQA---------LD-TREYFVTGS 2387 (2439)
T ss_pred -----cceee--eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHH---HHHHHhhh---------hh-hhheeeccC
Confidence 01222 5689999999999999999999999 9999999754 34444332 44 566899999
Q ss_pred cCCeEEEEECCCCcEEEEc----ccCCC--e--EEEEEeCCCCEEEEEeCCCc
Q 002519 864 CYQSLELWNMSENKTMTLT----AHEGL--I--AALAVSTETGYVASASHDKF 908 (913)
Q Consensus 864 ~dg~I~iwd~~~~~~~~~~----~h~~~--V--~~l~~spdg~~Lasgs~DG~ 908 (913)
..|.|+||++.....+... +|.+- + .-+-+. .+.+|.+|+.||+
T Consensus 2388 s~g~ikIw~~s~~~ll~~~p~e~ak~gfFr~~g~Q~~v~-~~nrifsCgad~~ 2439 (2439)
T KOG1064|consen 2388 SEGNIKIWRLSEFGLLHTFPSEHAKQGFFRNIGMQINVG-QCNRIFSCGADGT 2439 (2439)
T ss_pred cccceEEEEccccchhhcCchhhcccchhhhcCceeeec-cCceEEEecCCCC
Confidence 9999999999887655221 22221 0 112222 3346888888874
No 283
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.98 E-value=1.7e-07 Score=101.24 Aligned_cols=145 Identities=18% Similarity=0.177 Sum_probs=114.8
Q ss_pred cCCCCEEEEEEecCCCEEEEEeCCC-cEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCc
Q 002519 631 ASTSKVICCHFSSDGKLLATGGHDK-KAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGY 709 (913)
Q Consensus 631 ~H~~~V~~l~fspdg~~Lasgs~Dg-~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~ 709 (913)
+|.+.|.-..+..+++-++.|..|| .|-|||.++++. +.+...-+.|.++..+++|++++.+.....|.++|+++ +.
T Consensus 357 ~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~-kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididn-gn 434 (668)
T COG4946 357 GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV-KRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDN-GN 434 (668)
T ss_pred CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceE-EEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecC-CC
Confidence 6788899999999999999999999 899999988764 45556678899999999999999999999999999998 44
Q ss_pred eeEEeccCCCCeEEEEEcCCCCeEEEEEeCC----CcEEEEEcCCCeeeEEee--CCceEEEEecCCCEEEEEEc
Q 002519 710 SLRTFMGHSASVMSLDFHPNKDDLICSCDGD----GEIRYWSINNGSCTRVFK--GGTAQMRFQPHLGRYLAAAA 778 (913)
Q Consensus 710 ~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~D----g~I~iwdl~~~~~~~~~~--~~~~~v~~s~~~~~ll~~~~ 778 (913)
....-+...+-|+.+.|+|+++.+. -+--+ ..|+++|+.+++...... ....+-+|.|+++++..-+.
T Consensus 435 v~~idkS~~~lItdf~~~~nsr~iA-YafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs~ 508 (668)
T COG4946 435 VRLIDKSEYGLITDFDWHPNSRWIA-YAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLSA 508 (668)
T ss_pred eeEecccccceeEEEEEcCCceeEE-EecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEEec
Confidence 4444455667899999999977554 43333 469999999988765543 33455678899887765543
No 284
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.98 E-value=4.9e-10 Score=127.85 Aligned_cols=262 Identities=16% Similarity=0.200 Sum_probs=180.6
Q ss_pred cceeeeEeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCC--eE
Q 002519 622 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDK--TV 699 (913)
Q Consensus 622 ~~~~~~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg--~V 699 (913)
.|+..++|+.|+...+|++|+-+.+.|++|+..|.|++|++.+|........|...|+.|.-+.||..+++.+.-. ..
T Consensus 1090 RFr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pls 1169 (1516)
T KOG1832|consen 1090 RFRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLS 1169 (1516)
T ss_pred hcccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchH
Confidence 5788889999999999999999999999999999999999999999999999999999999999999887776533 47
Q ss_pred EEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEe-eC------CceEEEEecCCCE
Q 002519 700 RVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF-KG------GTAQMRFQPHLGR 772 (913)
Q Consensus 700 ~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~-~~------~~~~v~~s~~~~~ 772 (913)
.+|++.+......+|.+ ..++.|+.....-+ .|.......+||+.++..+.++ .+ ..+...|+|.+..
T Consensus 1170 aLW~~~s~~~~~Hsf~e----d~~vkFsn~~q~r~-~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~L 1244 (1516)
T KOG1832|consen 1170 ALWDASSTGGPRHSFDE----DKAVKFSNSLQFRA-LGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTL 1244 (1516)
T ss_pred HHhccccccCccccccc----cceeehhhhHHHHH-hcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcce
Confidence 89999875555555543 45678876533223 4444567899999998766553 22 2355778888776
Q ss_pred EEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCCceEEEeecCCCceEEEEE
Q 002519 773 YLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVF 852 (913)
Q Consensus 773 ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~ 852 (913)
++- || .+||++....++.|......+ .-.|+|.|.-++..+ .|||+++.. .++.+.. -.-..+.|
T Consensus 1245 Iln---dG--vLWDvR~~~aIh~FD~ft~~~-~G~FHP~g~eVIINS----EIwD~RTF~---lLh~VP~--Ldqc~VtF 1309 (1516)
T KOG1832|consen 1245 ILN---DG--VLWDVRIPEAIHRFDQFTDYG-GGGFHPSGNEVIINS----EIWDMRTFK---LLHSVPS--LDQCAVTF 1309 (1516)
T ss_pred Eee---Cc--eeeeeccHHHHhhhhhheecc-cccccCCCceEEeec----hhhhhHHHH---HHhcCcc--ccceEEEe
Confidence 652 33 589999988887776554332 346999999877765 589998763 3332221 11245567
Q ss_pred eCCCCEEEEEEc--C---------------CeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEE
Q 002519 853 HPTYPSLLVIGC--Y---------------QSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASA 903 (913)
Q Consensus 853 sp~g~~l~s~s~--d---------------g~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~Lasg 903 (913)
+..|..++..-. | ...+-||...-..+........|.++|-++...+++..
T Consensus 1310 NstG~VmYa~~~~~d~~sdvh~~r~k~p~fSSFRTf~a~dYs~iaTi~v~R~~~Dlct~~~D~~l~vI 1377 (1516)
T KOG1832|consen 1310 NSTGDVMYAMLNIEDVMSDVHTRRVKHPLFSSFRTFDAIDYSDIATIPVDRCLLDLCTEPTDSFLGVI 1377 (1516)
T ss_pred ccCccchhhhhhhhhhhhhhcccccccchhhhhccccccccccceeeecccchhhhhcCCccceEEEE
Confidence 777765544320 0 02233333333333333445566666766666666554
No 285
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.96 E-value=1.9e-09 Score=121.32 Aligned_cols=218 Identities=20% Similarity=0.298 Sum_probs=157.9
Q ss_pred cccccccCccceeeeEeecCCCCEEEEEEecCC-CEEEEEeCCCcEEEEECCCC-ceeeEeccCCCCeEEEEECCCCCEE
Q 002519 613 RGMDVSQGFSFKEANSVRASTSKVICCHFSSDG-KLLATGGHDKKAVLWHTDTL-KSKTNLEEHSSLITDVRFSPSMPRL 690 (913)
Q Consensus 613 ~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg-~~Lasgs~Dg~V~vwd~~~~-~~~~~l~~h~~~V~~l~fspdg~~L 690 (913)
.+|.+.....-.....+.+|...|+++.|.+.. ..||+++.|-.|..||+.+. ..+..+..-...-..|+|+-....+
T Consensus 94 iiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~v 173 (1081)
T KOG0309|consen 94 IIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNV 173 (1081)
T ss_pred hhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcch
Confidence 356666665666677889999999999999854 68999999999999999854 3445555555567789998776677
Q ss_pred EEEeCCCeEEEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEe----eCCceEEEE
Q 002519 691 ATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF----KGGTAQMRF 766 (913)
Q Consensus 691 asgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~----~~~~~~v~~ 766 (913)
.+.+..+.|+|||++.++.++..+++|...|+.++|.......+.+++.|++|++||.......... +..+..-++
T Consensus 174 lasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~ 253 (1081)
T KOG0309|consen 174 LASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRY 253 (1081)
T ss_pred hhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccc
Confidence 7777788899999999889999999999999999998765566779999999999998765432221 122333445
Q ss_pred ecCCCEEEEEEc--CCeEEE---------EECCC-CeEEEEecCCCCCeEEEEEcC--------CCC--EEEEEeCC-eE
Q 002519 767 QPHLGRYLAAAA--ENVVSI---------LDAET-QACRLSLQGHTKPIDSVCWDP--------SGE--LLASVSED-SV 823 (913)
Q Consensus 767 s~~~~~ll~~~~--dg~I~i---------~D~~t-~~~~~~l~~h~~~V~sl~~sp--------dg~--~l~s~s~d-~I 823 (913)
.|-+.-++.--. ++.|.+ |+..+ ..++++|.||.+.|..+-|-. +.+ -|++-+.| ++
T Consensus 254 ~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~l 333 (1081)
T KOG0309|consen 254 LPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTL 333 (1081)
T ss_pred cccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCce
Confidence 554433222211 223333 33333 368899999999887666533 222 68899999 99
Q ss_pred EEEECCC
Q 002519 824 RVWTVGS 830 (913)
Q Consensus 824 ~vwdl~~ 830 (913)
++|-+.+
T Consensus 334 rlWpI~~ 340 (1081)
T KOG0309|consen 334 RLWPIDS 340 (1081)
T ss_pred EeeeccH
Confidence 9998753
No 286
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.92 E-value=1.8e-07 Score=94.59 Aligned_cols=246 Identities=9% Similarity=-0.005 Sum_probs=162.2
Q ss_pred CCcEEEEECCCCc--eeeEeccCCCCeEEEEECC-----CCCEEEEEeCCCeEEEEEcCCCCceeEEeccCCCCeEEEEE
Q 002519 654 DKKAVLWHTDTLK--SKTNLEEHSSLITDVRFSP-----SMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDF 726 (913)
Q Consensus 654 Dg~V~vwd~~~~~--~~~~l~~h~~~V~~l~fsp-----dg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~f 726 (913)
...|-+|++.+.. .+... ..+.|.| ...+||.|+.-|...+|...+..........|...|+-+.=
T Consensus 51 t~sv~i~~~y~N~~~iv~~y-------~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r 123 (344)
T KOG4532|consen 51 TISVPINSHYSNPKGIVEFY-------TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKR 123 (344)
T ss_pred eeeeEeccccCCchhhEEee-------ecccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhh
Confidence 4457777776432 22222 2344443 45589999999999999998755444444445444332222
Q ss_pred cCCCCeEEEEEeCCCcEEEEEcCCCeeeEEee---CCceEEEEecCCCEEEEEEcCCeEEEEECCCC-e-EEE-EecCCC
Q 002519 727 HPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQMRFQPHLGRYLAAAAENVVSILDAETQ-A-CRL-SLQGHT 800 (913)
Q Consensus 727 sp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~---~~~~~v~~s~~~~~ll~~~~dg~I~i~D~~t~-~-~~~-~l~~h~ 800 (913)
..+...-+..++.|.++++.+++.+....... .....+.+++++.+.++.+....|..|.+... + .+. .....+
T Consensus 124 ~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~ 203 (344)
T KOG4532|consen 124 YCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTS 203 (344)
T ss_pred hcccccceeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccC
Confidence 22223334478889999998887654433322 23677889999999999999999999977654 2 222 223345
Q ss_pred CCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCc--eEEEeecCCCceEEEEEeCCCC--EEEEEEcCCeEEEEECCC
Q 002519 801 KPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGE--CVHELSCNGNKFHSCVFHPTYP--SLLVIGCYQSLELWNMSE 875 (913)
Q Consensus 801 ~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~--~i~~~~~~~~~i~~l~~sp~g~--~l~s~s~dg~I~iwd~~~ 875 (913)
+.-.+..|+.....+|++..| ++.|||++....+. .-..-..|.+.+..|.|++.|. +|+..-.-+.+.|.|+++
T Consensus 204 D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~ 283 (344)
T KOG4532|consen 204 DHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRN 283 (344)
T ss_pred CCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEccc
Confidence 556788999999999999999 99999998754322 1223345788999999998764 466666667999999998
Q ss_pred CcEEE--------EcccCC-CeEEEEEeCCCCEEEEEeCC
Q 002519 876 NKTMT--------LTAHEG-LIAALAVSTETGYVASASHD 906 (913)
Q Consensus 876 ~~~~~--------~~~h~~-~V~~l~~spdg~~Lasgs~D 906 (913)
++... ...|.. .|..-.|+.++.-+.+.+++
T Consensus 284 ~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~ 323 (344)
T KOG4532|consen 284 YVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNEL 323 (344)
T ss_pred CceeeEEecCccccccccccccccccccCCCcccccccch
Confidence 86441 122333 37888888877766555543
No 287
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.91 E-value=2.8e-08 Score=103.63 Aligned_cols=244 Identities=12% Similarity=0.203 Sum_probs=169.1
Q ss_pred CceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCceeE-EeccCCCCeEEEEEcCCCCeEEEEEeCCCcE
Q 002519 665 LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLR-TFMGHSASVMSLDFHPNKDDLICSCDGDGEI 743 (913)
Q Consensus 665 ~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~-~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I 743 (913)
...+..++||.+.|++...-|...-+++.+.|.+||||--++.+..-. ........++++.+.++... |+.|-..|++
T Consensus 14 p~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~-L~vg~~ngtv 92 (404)
T KOG1409|consen 14 PELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRR-LYVGQDNGTV 92 (404)
T ss_pred hhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceE-EEEEEecceE
Confidence 345667889999999999999999999999999999997665343322 22345678899999988654 4488889999
Q ss_pred EEEEcCCC----eeeEEee---CCceEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEE
Q 002519 744 RYWSINNG----SCTRVFK---GGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLA 816 (913)
Q Consensus 744 ~iwdl~~~----~~~~~~~---~~~~~v~~s~~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~ 816 (913)
.-+.+... ...+.+. ..+..+.|+.....+++++.|..+..--.+.+..+..+.- ...-+++.|.-. +..
T Consensus 93 tefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~-~~~~t~~~~d~~--~~f 169 (404)
T KOG1409|consen 93 TEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNF-ETPASALQFDAL--YAF 169 (404)
T ss_pred EEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEe-eccCCCCceeeE--EEE
Confidence 88876532 2222222 2345566777767788888777766555554432211110 000111111111 233
Q ss_pred EEeCC-eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcE--EEEcccCCCeEEEEE
Q 002519 817 SVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKT--MTLTAHEGLIAALAV 893 (913)
Q Consensus 817 s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~--~~~~~h~~~V~~l~~ 893 (913)
.|... .|.+-.+.- .....+..+.+|...+.+++|.+....++++..|..|.+||+..++- ..+.+|...|..+..
T Consensus 170 vGd~~gqvt~lr~~~-~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~ 248 (404)
T KOG1409|consen 170 VGDHSGQITMLKLEQ-NGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSY 248 (404)
T ss_pred ecccccceEEEEEee-cCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhh
Confidence 33332 333333221 23367888899999999999999999999999999999999976554 478899999999999
Q ss_pred eCCCCEEEEEeCCCcEEEeC
Q 002519 894 STETGYVASASHDKFVKLWK 913 (913)
Q Consensus 894 spdg~~Lasgs~DG~I~IWd 913 (913)
.+--+.+++++.||.|.+|+
T Consensus 249 ~~~t~~l~S~~edg~i~~w~ 268 (404)
T KOG1409|consen 249 AQHTRQLISCGEDGGIVVWN 268 (404)
T ss_pred hhhheeeeeccCCCeEEEEe
Confidence 88889999999999999996
No 288
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.88 E-value=9e-08 Score=108.86 Aligned_cols=236 Identities=16% Similarity=0.217 Sum_probs=167.6
Q ss_pred CCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCC------------CCEEEEEeCCCeEEE
Q 002519 634 SKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPS------------MPRLATSSFDKTVRV 701 (913)
Q Consensus 634 ~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspd------------g~~Lasgs~Dg~V~I 701 (913)
..-.++.|++.| +||.|+. ..|.|.|..+.+.+..++.|...|+.|+|.|- .-+||++...|.|.|
T Consensus 16 sN~~A~Dw~~~G-LiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil 93 (1062)
T KOG1912|consen 16 SNRNAADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIIL 93 (1062)
T ss_pred ccccccccCccc-eEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEE
Confidence 336778899888 7787764 57999999999999999999999999999872 125677777899999
Q ss_pred EEcCCCCceeEEeccCCCCeEEEEEcC---CCCeEEEEEeCCCcEEEEEcCCCeeeEEeeCCc---eEEEEecCC-CEEE
Q 002519 702 WDADNPGYSLRTFMGHSASVMSLDFHP---NKDDLICSCDGDGEIRYWSINNGSCTRVFKGGT---AQMRFQPHL-GRYL 774 (913)
Q Consensus 702 wdl~~~~~~~~~~~~h~~~V~sl~fsp---~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~---~~v~~s~~~-~~ll 774 (913)
||+.. ...+..+..|.++|..++|.+ +.++++++-....+|.+|+..+|.....+.... .++.+.|.+ ..+.
T Consensus 94 ~d~~~-~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~ 172 (1062)
T KOG1912|consen 94 VDFVL-ASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFC 172 (1062)
T ss_pred EEehh-hhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEE
Confidence 99987 666777888999999999976 344677777778999999999999887765433 346666655 4555
Q ss_pred EEEcCCeEEEEECCC-------CeEEEEecCCCC------------C-------------eEEEEEcCCCC-EEEEEeCC
Q 002519 775 AAAAENVVSILDAET-------QACRLSLQGHTK------------P-------------IDSVCWDPSGE-LLASVSED 821 (913)
Q Consensus 775 ~~~~dg~I~i~D~~t-------~~~~~~l~~h~~------------~-------------V~sl~~spdg~-~l~s~s~d 821 (913)
+.+..|.|.+.+.-. ++....-..|.+ . .-.++|+|.-+ +++..-..
T Consensus 173 ~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~pr 252 (1062)
T KOG1912|consen 173 VLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPR 252 (1062)
T ss_pred EEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEecc
Confidence 666677766665421 222222222222 0 11256788665 44444444
Q ss_pred eEEEEECCCCCCCceEEEeecCCCceEEEEEeCC--CCEEEEEEcCCeEEEEECCC
Q 002519 822 SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPT--YPSLLVIGCYQSLELWNMSE 875 (913)
Q Consensus 822 ~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~--g~~l~s~s~dg~I~iwd~~~ 875 (913)
.+.|+|+.-. .++..+....+.+.-+.+-|+ ...+++...||.+.||-.+.
T Consensus 253 ellv~dle~~---~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 253 ELLVFDLEYE---CCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred ceEEEcchhh---ceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence 8999999644 556555555555555566555 45799999999999997655
No 289
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.87 E-value=1.3e-08 Score=104.41 Aligned_cols=234 Identities=17% Similarity=0.294 Sum_probs=146.8
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCce----eEEeccCC------------CCeEEEEEcCCC-CeEEEE
Q 002519 674 HSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYS----LRTFMGHS------------ASVMSLDFHPNK-DDLICS 736 (913)
Q Consensus 674 h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~----~~~~~~h~------------~~V~sl~fsp~~-~~ll~s 736 (913)
....|++|.|...|.||+||...|.|.+|.-+....+ +..|.+|. ..|..|.|..++ ..-++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 3456999999999999999999999999987653322 22344443 357788887653 334446
Q ss_pred EeCCCcEEEEEcCCCeeeEEeeCCceEEEEecCCCEEEEEEc---------CCeEEEEECCCCeEEEEecCCCCCeEEEE
Q 002519 737 CDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAA---------ENVVSILDAETQACRLSLQGHTKPIDSVC 807 (913)
Q Consensus 737 gs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~s~~~~~ll~~~~---------dg~I~i~D~~t~~~~~~l~~h~~~V~sl~ 807 (913)
.+.|.+|++|.+.......+-......-.-+|.++-+.+... |..|..+ .+...-..|...|.++.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~-----p~rvyaNaH~yhiNSiS 179 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAK-----PCRVYANAHPYHINSIS 179 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEec-----cceeccccceeEeeeee
Confidence 678999999999865433222211111111122211111000 1111111 01111245788899999
Q ss_pred EcCCCCEEEEEeCCeEEEEECCCCCCCceEEEeecCC-----CceEEEEEeCC-CCEEEEEEcCCeEEEEECCCCcE---
Q 002519 808 WDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNG-----NKFHSCVFHPT-YPSLLVIGCYQSLELWNMSENKT--- 878 (913)
Q Consensus 808 ~spdg~~l~s~s~d~I~vwdl~~~~~~~~i~~~~~~~-----~~i~~l~~sp~-g~~l~s~s~dg~I~iwd~~~~~~--- 878 (913)
|..|...++++.+=.|.+|++......-.+..++.|. ..|++..|+|. ...+...+..|.|++-|++...+
T Consensus 180 ~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn 259 (460)
T COG5170 180 FNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDN 259 (460)
T ss_pred ecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccC
Confidence 9999888876654499999987654333344444443 24778889995 45677788889999999983221
Q ss_pred --E----EE--------cccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 002519 879 --M----TL--------TAHEGLIAALAVSTETGYVASASHDKFVKLWK 913 (913)
Q Consensus 879 --~----~~--------~~h~~~V~~l~~spdg~~Lasgs~DG~I~IWd 913 (913)
. .+ .+-...|..+.|+++|++|++-+. -+|+|||
T Consensus 260 ~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwD 307 (460)
T COG5170 260 SKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWD 307 (460)
T ss_pred chhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEe
Confidence 1 11 123357889999999999987654 4799997
No 290
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.87 E-value=6.5e-06 Score=87.71 Aligned_cols=214 Identities=18% Similarity=0.212 Sum_probs=139.1
Q ss_pred EEEEec-CCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEEC-CCCCEEEEEeCCCeEEEEEcCCCCceeEEec
Q 002519 638 CCHFSS-DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFS-PSMPRLATSSFDKTVRVWDADNPGYSLRTFM 715 (913)
Q Consensus 638 ~l~fsp-dg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fs-pdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~ 715 (913)
+++|.+ ++.++++....+.|+.|+..+++... +.... ...+++. ++ ..|+.+..++ +.++|+.+ +.....+.
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~-g~l~v~~~~~-~~~~d~~~-g~~~~~~~ 77 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPD-GRLYVADSGG-IAVVDPDT-GKVTVLAD 77 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTT-SEEEEEETTC-EEEEETTT-TEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccC-CEEEEEEcCc-eEEEecCC-CcEEEEee
Confidence 678888 77777777778999999998876543 22222 6677777 56 4555555555 56669887 33222222
Q ss_pred c-----CCCCeEEEEEcCCCCeEEEEEeCC--------CcEEEEEcCCCeeeEEee--CCceEEEEecCCCEEEEEEc-C
Q 002519 716 G-----HSASVMSLDFHPNKDDLICSCDGD--------GEIRYWSINNGSCTRVFK--GGTAQMRFQPHLGRYLAAAA-E 779 (913)
Q Consensus 716 ~-----h~~~V~sl~fsp~~~~ll~sgs~D--------g~I~iwdl~~~~~~~~~~--~~~~~v~~s~~~~~ll~~~~-d 779 (913)
. .....+++++.++|+ ++++.... |.|..++.. ++...... ...+.++|+++++.++++.. .
T Consensus 78 ~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~ 155 (246)
T PF08450_consen 78 LPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFN 155 (246)
T ss_dssp EETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTT
T ss_pred ccCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECCcchheeeccccc
Confidence 1 346788999999987 44454433 567778877 55444333 34567999999988776554 7
Q ss_pred CeEEEEECCCCe-------EEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEeecCCCceEEEE
Q 002519 780 NVVSILDAETQA-------CRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCV 851 (913)
Q Consensus 780 g~I~i~D~~t~~-------~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~ 851 (913)
+.|..||+.... ....+.........++++.+|+++++.... .|.++|.. + +.+..+......+++|+
T Consensus 156 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G---~~~~~i~~p~~~~t~~~ 231 (246)
T PF08450_consen 156 GRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-G---KLLREIELPVPRPTNCA 231 (246)
T ss_dssp TEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-S---CEEEEEE-SSSSEEEEE
T ss_pred ceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-c---cEEEEEcCCCCCEEEEE
Confidence 789999885321 122222222347889999999977776655 99999976 4 55666666556899999
Q ss_pred Ee-CCCCEEEEEE
Q 002519 852 FH-PTYPSLLVIG 863 (913)
Q Consensus 852 ~s-p~g~~l~s~s 863 (913)
|. ++.+.|++.+
T Consensus 232 fgg~~~~~L~vTt 244 (246)
T PF08450_consen 232 FGGPDGKTLYVTT 244 (246)
T ss_dssp EESTTSSEEEEEE
T ss_pred EECCCCCEEEEEe
Confidence 94 6767666654
No 291
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.86 E-value=1.3e-06 Score=92.43 Aligned_cols=214 Identities=14% Similarity=0.052 Sum_probs=137.7
Q ss_pred CCCcEEEEECCCCceeeEeccC--CCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCceeEEeccCCCCeEEEEEcCCC
Q 002519 653 HDKKAVLWHTDTLKSKTNLEEH--SSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNK 730 (913)
Q Consensus 653 ~Dg~V~vwd~~~~~~~~~l~~h--~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~ 730 (913)
.+|+|..||..+++.+.....- .....+. ..+++.+|++++.++.|+.||..+ ++.+..+.. ...+...... .+
T Consensus 1 ~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~t-G~~~W~~~~-~~~~~~~~~~-~~ 76 (238)
T PF13360_consen 1 DDGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKT-GKVLWRFDL-PGPISGAPVV-DG 76 (238)
T ss_dssp -TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTT-SEEEEEEEC-SSCGGSGEEE-ET
T ss_pred CCCEEEEEECCCCCEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCC-CCEEEEeec-cccccceeee-cc
Confidence 3688999999999988887541 1222211 223567888889999999999988 555555443 2222111122 23
Q ss_pred CeEEEEEeCCCcEEEEEcCCCeeeEEe-eCC------ceEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCC-
Q 002519 731 DDLICSCDGDGEIRYWSINNGSCTRVF-KGG------TAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKP- 802 (913)
Q Consensus 731 ~~ll~sgs~Dg~I~iwdl~~~~~~~~~-~~~------~~~v~~s~~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~- 802 (913)
+.++ .+..++.|+.+|.++++.+..+ ... .........++.++++..++.|..+|.++|+.+.........
T Consensus 77 ~~v~-v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~ 155 (238)
T PF13360_consen 77 GRVY-VGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRG 155 (238)
T ss_dssp TEEE-EEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-S
T ss_pred cccc-cccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCC
Confidence 4444 5667889999999999988874 321 122333444788888898999999999999998888764422
Q ss_pred ---------eEEEEEcCCCCEEEEEeCC-e-EEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEE
Q 002519 803 ---------IDSVCWDPSGELLASVSED-S-VRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELW 871 (913)
Q Consensus 803 ---------V~sl~~spdg~~l~s~s~d-~-I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iw 871 (913)
+.+-.+..++ .++.++.+ . +.+ |+.++. .+.... ...+.. .....+..|++++.++.|.+|
T Consensus 156 ~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~-d~~tg~---~~w~~~--~~~~~~-~~~~~~~~l~~~~~~~~l~~~ 227 (238)
T PF13360_consen 156 SSPISSFSDINGSPVISDG-RVYVSSGDGRVVAV-DLATGE---KLWSKP--ISGIYS-LPSVDGGTLYVTSSDGRLYAL 227 (238)
T ss_dssp S--EEEETTEEEEEECCTT-EEEEECCTSSEEEE-ETTTTE---EEEEEC--SS-ECE-CEECCCTEEEEEETTTEEEEE
T ss_pred CcceeeecccccceEEECC-EEEEEcCCCeEEEE-ECCCCC---EEEEec--CCCccC-CceeeCCEEEEEeCCCEEEEE
Confidence 1222233345 55555555 4 555 998873 332222 122222 245677888888899999999
Q ss_pred ECCCCcEE
Q 002519 872 NMSENKTM 879 (913)
Q Consensus 872 d~~~~~~~ 879 (913)
|+.+++.+
T Consensus 228 d~~tG~~~ 235 (238)
T PF13360_consen 228 DLKTGKVV 235 (238)
T ss_dssp ETTTTEEE
T ss_pred ECCCCCEE
Confidence 99999875
No 292
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.84 E-value=9.3e-09 Score=112.11 Aligned_cols=205 Identities=19% Similarity=0.291 Sum_probs=146.0
Q ss_pred eeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCc------eeEEeccCCCCeEEEEEcCCCCeEEEEEeCCC
Q 002519 668 KTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGY------SLRTFMGHSASVMSLDFHPNKDDLICSCDGDG 741 (913)
Q Consensus 668 ~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~------~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg 741 (913)
+..+.+|...|..|+--.+.+-+++++.|++|++|.++..+. +-.++..|+.+|.++.|..+.+ .+++| ||
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr-~i~Sc--D~ 804 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLR-SIASC--DG 804 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccc-eeeec--cC
Confidence 445778999999998888888999999999999999986442 4567889999999999998754 34344 89
Q ss_pred cEEEEEcCCCeeeEEe-----eCCceEEEEecC--CCEEEEE-EcCCeEEEEECCCCeEEEEecC-----CCCCeEEEEE
Q 002519 742 EIRYWSINNGSCTRVF-----KGGTAQMRFQPH--LGRYLAA-AAENVVSILDAETQACRLSLQG-----HTKPIDSVCW 808 (913)
Q Consensus 742 ~I~iwdl~~~~~~~~~-----~~~~~~v~~s~~--~~~ll~~-~~dg~I~i~D~~t~~~~~~l~~-----h~~~V~sl~~ 808 (913)
.|.+||.--++.+... .+....+...+. ...++++ +.+.+|+++|.+..+....++. ....+++++.
T Consensus 805 giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaV 884 (1034)
T KOG4190|consen 805 GIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAV 884 (1034)
T ss_pred cceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEe
Confidence 9999998777655432 122333443333 3445555 4588999999999876666543 3456899999
Q ss_pred cCCCCEEEEEeCC-eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEE-EECCCCcEE
Q 002519 809 DPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLEL-WNMSENKTM 879 (913)
Q Consensus 809 spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~i-wd~~~~~~~ 879 (913)
.+.|++++++-.. .|.+.|.+++ +.+..+...+.....++ .|....++....|.++.| |....+...
T Consensus 885 a~~GN~lAa~LSnGci~~LDaR~G---~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhaldgimh 953 (1034)
T KOG4190|consen 885 ADKGNKLAAALSNGCIAILDARNG---KVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMH 953 (1034)
T ss_pred ccCcchhhHHhcCCcEEEEecCCC---ceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCCeee
Confidence 9999999888766 9999999988 44444333222222222 345556777777888888 876665443
No 293
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.83 E-value=1.3e-06 Score=99.90 Aligned_cols=252 Identities=11% Similarity=0.021 Sum_probs=154.8
Q ss_pred CCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCceeEEeccCCCCe---
Q 002519 645 GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASV--- 721 (913)
Q Consensus 645 g~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V--- 721 (913)
+..|+.++.+|.|+.+|.++|+.+-..........+... .+..|+.++.++.|..+|.++ ++.+..+......+
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v--~~~~v~v~~~~g~l~ald~~t-G~~~W~~~~~~~~~~~~ 196 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVV--SDGLVLVHTSNGMLQALNESD-GAVKWTVNLDVPSLTLR 196 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEE--ECCEEEEECCCCEEEEEEccC-CCEeeeecCCCCccccc
Confidence 456777888999999999999988777654322222222 244677788899999999998 55554443211100
Q ss_pred --EEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeCCc----e------EEEEec--CCCEEEEEEcCCeEEEEEC
Q 002519 722 --MSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGT----A------QMRFQP--HLGRYLAAAAENVVSILDA 787 (913)
Q Consensus 722 --~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~----~------~v~~s~--~~~~ll~~~~dg~I~i~D~ 787 (913)
.+.... ++. ++.++.+|.|..+|..+++.+..+.... . .+..+| .++.+++++.++.+..+|.
T Consensus 197 ~~~sP~v~--~~~-v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~ 273 (394)
T PRK11138 197 GESAPATA--FGG-AIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDL 273 (394)
T ss_pred CCCCCEEE--CCE-EEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEEC
Confidence 011111 233 4467779999999999988766543210 0 011111 3577888888999999999
Q ss_pred CCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEeecC-CCceEEEEEeCCCCEEEEEEcC
Q 002519 788 ETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCN-GNKFHSCVFHPTYPSLLVIGCY 865 (913)
Q Consensus 788 ~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~-~~~i~~l~~sp~g~~l~s~s~d 865 (913)
.+++.+...... ....+.. .+..|+.++.+ .+..+|..+++ .+...... .....+..+ .+.+|++++.+
T Consensus 274 ~tG~~~W~~~~~--~~~~~~~--~~~~vy~~~~~g~l~ald~~tG~---~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~ 344 (394)
T PRK11138 274 RSGQIVWKREYG--SVNDFAV--DGGRIYLVDQNDRVYALDTRGGV---ELWSQSDLLHRLLTAPVL--YNGYLVVGDSE 344 (394)
T ss_pred CCCCEEEeecCC--CccCcEE--ECCEEEEEcCCCeEEEEECCCCc---EEEcccccCCCcccCCEE--ECCEEEEEeCC
Confidence 999887765421 1112222 34555556656 99999998773 22221111 111222222 25578899999
Q ss_pred CeEEEEECCCCcEEE-EcccCCCeEE-EEEeCCCCEEEEEeCCCcEEEeC
Q 002519 866 QSLELWNMSENKTMT-LTAHEGLIAA-LAVSTETGYVASASHDKFVKLWK 913 (913)
Q Consensus 866 g~I~iwd~~~~~~~~-~~~h~~~V~~-l~~spdg~~Lasgs~DG~I~IWd 913 (913)
|.|+++|..+++.+. .......+.+ ..+ .+..|+.++.||.|+.++
T Consensus 345 G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~ 392 (394)
T PRK11138 345 GYLHWINREDGRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYAIT 392 (394)
T ss_pred CEEEEEECCCCCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEEEe
Confidence 999999999999873 3222233332 222 244788889999998874
No 294
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=6.7e-08 Score=103.98 Aligned_cols=247 Identities=16% Similarity=0.155 Sum_probs=162.9
Q ss_pred CCcccccccCccceeeeEeecCCCCEEEEEEecCCCEEEEEeC-CCcEEEEECCCCceeeEecc--CCCCeEEEEECCCC
Q 002519 611 GGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGH-DKKAVLWHTDTLKSKTNLEE--HSSLITDVRFSPSM 687 (913)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~Lasgs~-Dg~V~vwd~~~~~~~~~l~~--h~~~V~~l~fspdg 687 (913)
..+-|........+-+..++.|.+.|.+++.+-||.++++++. |..++++|+++...+.-++- -.+.+.++ .++..
T Consensus 31 h~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv-~skGd 109 (558)
T KOG0882|consen 31 HKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEWV-TSKGD 109 (558)
T ss_pred hhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCCCceEEe-cCCCC
Confidence 3344433333345667788999999999999999999999887 99999999987665543332 22222222 22221
Q ss_pred -C-EEEEE-eCCCeEEEEEcCCCCcee-EEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeCCceE
Q 002519 688 -P-RLATS-SFDKTVRVWDADNPGYSL-RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQ 763 (913)
Q Consensus 688 -~-~Lasg-s~Dg~V~Iwdl~~~~~~~-~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~ 763 (913)
. .|+.+ -.++.|.|+|-....... ..-.-|..+|.++.+.+-++..+ +....|.|..|..+. .+.-....
T Consensus 110 ~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~v-SiD~~gmVEyWs~e~-----~~qfPr~~ 183 (558)
T KOG0882|consen 110 KISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAV-SIDISGMVEYWSAEG-----PFQFPRTN 183 (558)
T ss_pred eeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeecccccee-eccccceeEeecCCC-----cccCcccc
Confidence 1 33333 347899999987655333 33446999999999999887555 888889999998763 11111111
Q ss_pred EEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEe--
Q 002519 764 MRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHEL-- 840 (913)
Q Consensus 764 v~~s~~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~-- 840 (913)
+.| .+....-++.+........+++|+|+|..+.+-+.| .|+++++++++....+.+.
T Consensus 184 l~~-------------------~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t 244 (558)
T KOG0882|consen 184 LNF-------------------ELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLT 244 (558)
T ss_pred ccc-------------------cccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccch
Confidence 222 222222233333345667899999999999999999 9999999887432222111
Q ss_pred ---------------------------ecC-CCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEccc
Q 002519 841 ---------------------------SCN-GNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAH 884 (913)
Q Consensus 841 ---------------------------~~~-~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~h 884 (913)
..+ ......++|...+++|+.++--| |+|+++.++++..+.+.
T Consensus 245 ~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri~gk 315 (558)
T KOG0882|consen 245 DAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRILGK 315 (558)
T ss_pred hhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEEecc
Confidence 111 22345678999999998887654 88889988887765553
No 295
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.81 E-value=3.6e-06 Score=89.58 Aligned_cols=246 Identities=15% Similarity=0.129 Sum_probs=162.5
Q ss_pred CEEEEEEec-CCCEEEEEeCCCc-EEEEECCCCceeeEeccCCCCeE--EEEECCCCCEEEEEeC-----CCeEEEEEcC
Q 002519 635 KVICCHFSS-DGKLLATGGHDKK-AVLWHTDTLKSKTNLEEHSSLIT--DVRFSPSMPRLATSSF-----DKTVRVWDAD 705 (913)
Q Consensus 635 ~V~~l~fsp-dg~~Lasgs~Dg~-V~vwd~~~~~~~~~l~~h~~~V~--~l~fspdg~~Lasgs~-----Dg~V~Iwdl~ 705 (913)
....++.+| ++..+|.+-.-|+ ..+||..+++....+....+.-. .-+|++||++|++.-. .|.|-|||..
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~ 85 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAA 85 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECc
Confidence 345677888 5567777777665 67899999988877765433322 3579999999998844 5889999999
Q ss_pred CCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeCCceEEEEecCCCEEEEEEcCCeEEEE
Q 002519 706 NPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSIL 785 (913)
Q Consensus 706 ~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~s~~~~~ll~~~~dg~I~i~ 785 (913)
.....+..|..|.-.-..|.+.||++.|++. +|-|.-- .++++. ++=....+-.+.+.
T Consensus 86 ~~~~ri~E~~s~GIGPHel~l~pDG~tLvVA---NGGI~Th-pd~GR~------------------kLNl~tM~psL~~l 143 (305)
T PF07433_consen 86 RGYRRIGEFPSHGIGPHELLLMPDGETLVVA---NGGIETH-PDSGRA------------------KLNLDTMQPSLVYL 143 (305)
T ss_pred CCcEEEeEecCCCcChhhEEEcCCCCEEEEE---cCCCccC-cccCce------------------ecChhhcCCceEEE
Confidence 6567788888887777889999999877644 2333211 111111 11122345567778
Q ss_pred ECCCCeEEEE--e--cCCCCCeEEEEEcCCCCEEEEEeCC--------eEEEEECCCCCCCceEE----EeecCCCceEE
Q 002519 786 DAETQACRLS--L--QGHTKPIDSVCWDPSGELLASVSED--------SVRVWTVGSGSEGECVH----ELSCNGNKFHS 849 (913)
Q Consensus 786 D~~t~~~~~~--l--~~h~~~V~sl~~spdg~~l~s~s~d--------~I~vwdl~~~~~~~~i~----~~~~~~~~i~~ 849 (913)
|.++++.+.. + ..|...|..+++..+|..++..-.. -|-+++... ....+. ....-...+-+
T Consensus 144 d~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~--~~~~~~~p~~~~~~l~~Y~gS 221 (305)
T PF07433_consen 144 DARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG--ALRLLPAPEEQWRRLNGYIGS 221 (305)
T ss_pred ecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCC--cceeccCChHHHHhhCCceEE
Confidence 8888877766 4 3377789999999999877665422 244444322 111111 11223567899
Q ss_pred EEEeCCCCEEEEEEcC-CeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEeCC
Q 002519 850 CVFHPTYPSLLVIGCY-QSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHD 906 (913)
Q Consensus 850 l~~sp~g~~l~s~s~d-g~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~D 906 (913)
|+++.++..+++++-- +.+.+||..+++.+....- ..+..++..+++ +++|.+..
T Consensus 222 Ia~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l-~D~cGva~~~~~-f~~ssG~G 277 (305)
T PF07433_consen 222 IAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPL-PDACGVAPTDDG-FLVSSGQG 277 (305)
T ss_pred EEEeCCCCEEEEECCCCCEEEEEECCCCCEeecccc-CceeeeeecCCc-eEEeCCCc
Confidence 9999999988777655 5999999999998844332 235556655555 66665543
No 296
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.81 E-value=2.8e-07 Score=103.81 Aligned_cols=231 Identities=14% Similarity=0.217 Sum_probs=159.4
Q ss_pred cceeeeEeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeE--eccCCCCeEEEEECCCCCEEEEEeCCCeE
Q 002519 622 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTN--LEEHSSLITDVRFSPSMPRLATSSFDKTV 699 (913)
Q Consensus 622 ~~~~~~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~--l~~h~~~V~~l~fspdg~~Lasgs~Dg~V 699 (913)
++..-.+++||...|.-+.|+.....|-++..+|.|.||-+..+.-... -....+.|.+++|+.||..|+..-.||.|
T Consensus 60 nLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGav 139 (1189)
T KOG2041|consen 60 NLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAV 139 (1189)
T ss_pred ccchhhhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCE
Confidence 4455567999999999999999999999999999999998876543322 22355679999999999999999999999
Q ss_pred EEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCC-------eeeEE-------eeCCceEEE
Q 002519 700 RVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG-------SCTRV-------FKGGTAQMR 765 (913)
Q Consensus 700 ~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~-------~~~~~-------~~~~~~~v~ 765 (913)
.|=.++....--+.+++ .-...+.|++|.+.++ .+-..|.+.+||.... .|... +...+..++
T Consensus 140 IVGsvdGNRIwgKeLkg--~~l~hv~ws~D~~~~L-f~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~ 216 (1189)
T KOG2041|consen 140 IVGSVDGNRIWGKELKG--QLLAHVLWSEDLEQAL-FKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIE 216 (1189)
T ss_pred EEEeeccceecchhcch--heccceeecccHHHHH-hhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCcccccee
Confidence 88887752211122222 1233588999977555 6677899999997542 11111 111223344
Q ss_pred E--------ecCCCEEEEEEcCCeEEEEECCCC-eEEEEecCCCCCeEEEEEcCCCCEEEEEeCC----------eEEEE
Q 002519 766 F--------QPHLGRYLAAAAENVVSILDAETQ-ACRLSLQGHTKPIDSVCWDPSGELLASVSED----------SVRVW 826 (913)
Q Consensus 766 ~--------s~~~~~ll~~~~dg~I~i~D~~t~-~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d----------~I~vw 826 (913)
| -|+...++++...|.+.|...++. .++..-. .-.|..+.|+++|.+|++++.+ .|.+|
T Consensus 217 w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dt--gm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fy 294 (1189)
T KOG2041|consen 217 WNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDT--GMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFY 294 (1189)
T ss_pred eccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEec--ccEeecceecCCCcEEEEccCcccccCccccceEEEe
Confidence 3 356678888888999988866554 3333222 2568899999999999998865 23333
Q ss_pred ECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEE
Q 002519 827 TVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLV 861 (913)
Q Consensus 827 dl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s 861 (913)
.. -...+..++..+..|+.++|-..|-.++.
T Consensus 295 sp----~G~i~gtlkvpg~~It~lsWEg~gLriA~ 325 (1189)
T KOG2041|consen 295 SP----YGHIVGTLKVPGSCITGLSWEGTGLRIAI 325 (1189)
T ss_pred cc----chhheEEEecCCceeeeeEEcCCceEEEE
Confidence 32 23556677777888888888766644443
No 297
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.81 E-value=8.3e-06 Score=86.90 Aligned_cols=213 Identities=10% Similarity=0.069 Sum_probs=136.4
Q ss_pred EEEECC-CCCEEEEEeCCCeEEEEEcCCCCceeEEeccCCCCeEEEEEc-CCCCeEEEEEeCCCcEEEEEcCCCeeeEEe
Q 002519 680 DVRFSP-SMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFH-PNKDDLICSCDGDGEIRYWSINNGSCTRVF 757 (913)
Q Consensus 680 ~l~fsp-dg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fs-p~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~ 757 (913)
++.|.+ ++.++++-...+.|..|+..+ +. ...+.... ...+.+. ++ ..++ .+.. +.+.++|+.+++....+
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~-~~-~~~~~~~~--~~G~~~~~~~-g~l~-v~~~-~~~~~~d~~~g~~~~~~ 76 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDT-GE-VEVIDLPG--PNGMAFDRPD-GRLY-VADS-GGIAVVDPDTGKVTVLA 76 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTT-TE-EEEEESSS--EEEEEEECTT-SEEE-EEET-TCEEEEETTTTEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCC-Ce-EEEEecCC--CceEEEEccC-CEEE-EEEc-CceEEEecCCCcEEEEe
Confidence 678888 555666666689999999987 32 22222222 6777887 55 5455 4444 55566699988655443
Q ss_pred eC--------CceEEEEecCCCEEEEEEcC--------CeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC
Q 002519 758 KG--------GTAQMRFQPHLGRYLAAAAE--------NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED 821 (913)
Q Consensus 758 ~~--------~~~~v~~s~~~~~ll~~~~d--------g~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d 821 (913)
.. ..+.+++.++++.+++.... +.|..++.. ++...... .-...+.|+|+|+++.|+.+...
T Consensus 77 ~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~~pNGi~~s~dg~~lyv~ds~ 154 (246)
T PF08450_consen 77 DLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GLGFPNGIAFSPDGKTLYVADSF 154 (246)
T ss_dssp EEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EESSEEEEEEETTSSEEEEEETT
T ss_pred eccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-CcccccceEECCcchheeecccc
Confidence 32 23568899998866655543 568888887 55443333 34557899999999977655544
Q ss_pred --eEEEEECCCCCC-Cc---eEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEe
Q 002519 822 --SVRVWTVGSGSE-GE---CVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVS 894 (913)
Q Consensus 822 --~I~vwdl~~~~~-~~---~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~s 894 (913)
.|..|++..... .. .+..+.......-.+++..+|+.+++....+.|.+++.. ++.+ .+......+++++|.
T Consensus 155 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fg 233 (246)
T PF08450_consen 155 NGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFG 233 (246)
T ss_dssp TTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEE
T ss_pred cceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEE
Confidence 888888864322 22 222233323347889999999988877788999999998 6655 344334689999994
Q ss_pred -CCCCEEEE
Q 002519 895 -TETGYVAS 902 (913)
Q Consensus 895 -pdg~~Las 902 (913)
++.+.|+.
T Consensus 234 g~~~~~L~v 242 (246)
T PF08450_consen 234 GPDGKTLYV 242 (246)
T ss_dssp STTSSEEEE
T ss_pred CCCCCEEEE
Confidence 56555544
No 298
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.80 E-value=5.3e-07 Score=91.36 Aligned_cols=196 Identities=11% Similarity=0.060 Sum_probs=129.2
Q ss_pred CCeEEEEEcCCCCc-eeEEeccCCCCeEEEEEcCC----CCeEEEEEeCCCcEEEEEcCCCeeeEEe-eCCceEEE----
Q 002519 696 DKTVRVWDADNPGY-SLRTFMGHSASVMSLDFHPN----KDDLICSCDGDGEIRYWSINNGSCTRVF-KGGTAQMR---- 765 (913)
Q Consensus 696 Dg~V~Iwdl~~~~~-~~~~~~~h~~~V~sl~fsp~----~~~ll~sgs~Dg~I~iwdl~~~~~~~~~-~~~~~~v~---- 765 (913)
...|-+|++.+..+ .+..+.+ +.|.|. ...+|+.|+..|...+|...+....... ......+.
T Consensus 51 t~sv~i~~~y~N~~~iv~~y~g-------~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r 123 (344)
T KOG4532|consen 51 TISVPINSHYSNPKGIVEFYTG-------MTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKR 123 (344)
T ss_pred eeeeEeccccCCchhhEEeeec-------ccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhh
Confidence 34478888876432 3333332 444441 2336778889999999999866543222 11222111
Q ss_pred EecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEeecCC
Q 002519 766 FQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNG 844 (913)
Q Consensus 766 ~s~~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~ 844 (913)
+....-.++.++.|.++++++++.+.....+....-.+.++.+++|++++++.++. .|.+|.+....+...........
T Consensus 124 ~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~ 203 (344)
T KOG4532|consen 124 YCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTS 203 (344)
T ss_pred hcccccceeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccC
Confidence 11222356677788888888776654333332222338899999999999999888 99999997654432222333344
Q ss_pred CceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE------EEcccCCCeEEEEEeCCCC
Q 002519 845 NKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM------TLTAHEGLIAALAVSTETG 898 (913)
Q Consensus 845 ~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~------~~~~h~~~V~~l~~spdg~ 898 (913)
..-.+..|+.....++++..||++.|||++..... ....|.+.|+.+.|++.|.
T Consensus 204 D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~ 263 (344)
T KOG4532|consen 204 DHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGL 263 (344)
T ss_pred CCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCc
Confidence 45567789999999999999999999999876543 3456899999999998654
No 299
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=2e-07 Score=99.30 Aligned_cols=247 Identities=15% Similarity=0.174 Sum_probs=150.1
Q ss_pred EEEEECCCCceeeEeccCCCCeEEEEECCCCC-EEEEEeCCCeEEEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEE
Q 002519 657 AVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP-RLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLIC 735 (913)
Q Consensus 657 V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~-~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~ 735 (913)
|++.+..+.+....+.+|...|.+++|+|..+ +|..++.+.+|+|.|+++ ...+..+..+ ..+++++|.-+..++|+
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet-~~~vssy~a~-~~~wSC~wDlde~h~IY 252 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLET-SCVVSSYIAY-NQIWSCCWDLDERHVIY 252 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEeccc-ceeeeheecc-CCceeeeeccCCcceeE
Confidence 67777777777778888999999999999887 788999999999999998 6667777766 88999999999999999
Q ss_pred EEeCCCcEEEEEcCCCeeeE-EeeC-----CceEE------EEecCCCEEEEEEcCCeEEEEEC----CCCeEEEEecCC
Q 002519 736 SCDGDGEIRYWSINNGSCTR-VFKG-----GTAQM------RFQPHLGRYLAAAAENVVSILDA----ETQACRLSLQGH 799 (913)
Q Consensus 736 sgs~Dg~I~iwdl~~~~~~~-~~~~-----~~~~v------~~s~~~~~ll~~~~dg~I~i~D~----~t~~~~~~l~~h 799 (913)
+|...|.|.|||++..+... .+.+ .+..+ ...+.++.+++...+ +..|+. ....++..+. .
T Consensus 253 aGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele-~ 329 (463)
T KOG1645|consen 253 AGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELE-P 329 (463)
T ss_pred EeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccC-C
Confidence 99999999999998654221 1111 11111 223334444444333 223322 2222322222 2
Q ss_pred CCCeEEEEEcCCCC-EEEEEeCC-----------------eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEE
Q 002519 800 TKPIDSVCWDPSGE-LLASVSED-----------------SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLV 861 (913)
Q Consensus 800 ~~~V~sl~~spdg~-~l~s~s~d-----------------~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s 861 (913)
.+.+.++.+++..+ +|++.-.+ ...||..+.......... -..-..+.-.++.++|+.
T Consensus 330 pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~k----l~t~~ai~~~~~nn~iv~ 405 (463)
T KOG1645|consen 330 PGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTK----LSTTQAIRAVEDNNYIVV 405 (463)
T ss_pred CcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccc----cccccceeccccccEEEE
Confidence 34455566665444 34443331 222222221100000000 000111222345555554
Q ss_pred EEc-CCeEEEEECCCCcEEEEcccCCCeEEEEEeCC--CCEEEEEeCCCcEEEeC
Q 002519 862 IGC-YQSLELWNMSENKTMTLTAHEGLIAALAVSTE--TGYVASASHDKFVKLWK 913 (913)
Q Consensus 862 ~s~-dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spd--g~~Lasgs~DG~I~IWd 913 (913)
.+. .+.+.+||..+.+++.....+.+|.+++...- +.+|++-. |..++||+
T Consensus 406 ~gd~tn~lil~D~~s~evvQ~l~~~epv~Dicp~~~n~~syLa~LT-d~~v~Iyk 459 (463)
T KOG1645|consen 406 VGDSTNELILQDPHSFEVVQTLALSEPVLDICPNDTNGSSYLALLT-DDRVHIYK 459 (463)
T ss_pred ecCCcceeEEeccchhheeeecccCcceeecceeecCCcchhhhee-cceEEEEe
Confidence 443 46999999999999866666788988876542 33566554 55788875
No 300
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.76 E-value=4.4e-06 Score=86.39 Aligned_cols=231 Identities=16% Similarity=0.126 Sum_probs=122.1
Q ss_pred EEEecCCCEEEEEeCCCcEEEEECCCC--ceeeEecc---CCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCceeEE
Q 002519 639 CHFSSDGKLLATGGHDKKAVLWHTDTL--KSKTNLEE---HSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRT 713 (913)
Q Consensus 639 l~fspdg~~Lasgs~Dg~V~vwd~~~~--~~~~~l~~---h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~ 713 (913)
++.+.||++||.-- |..|.|=..++. ..+.+... ..-.=+.++|+||+..||.+...|+|+|||+.. ..+..
T Consensus 3 ~~~~~~Gk~lAi~q-d~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g--~~lf~ 79 (282)
T PF15492_consen 3 LALSSDGKLLAILQ-DQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMG--SELFV 79 (282)
T ss_pred eeecCCCcEEEEEe-ccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccc--ceeEE
Confidence 56778998888764 566666654421 12222222 223356899999999999999999999999974 33333
Q ss_pred eccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeCCceEEEEecCCCEEEEEEcCCeEEEEECC-----
Q 002519 714 FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAE----- 788 (913)
Q Consensus 714 ~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~s~~~~~ll~~~~dg~I~i~D~~----- 788 (913)
+..... +..+-..-| +| +.+-+.+. .. .....+++...+|.++-|-+.
T Consensus 80 I~p~~~------~~~d~~~Ai-ag-----l~Fl~~~~------------s~---~ws~ELlvi~Y~G~L~Sy~vs~gt~q 132 (282)
T PF15492_consen 80 IPPAMS------FPGDLSDAI-AG-----LIFLEYKK------------SA---QWSYELLVINYRGQLRSYLVSVGTNQ 132 (282)
T ss_pred cCcccc------cCCccccce-ee-----eEeecccc------------cc---ccceeEEEEeccceeeeEEEEcccCC
Confidence 332111 111100001 10 11111110 00 111235555555555544431
Q ss_pred CCeEEEE--ecC-CCCCeEEEEEcCCCCEEEEEeCC-e-EEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCE--EEE
Q 002519 789 TQACRLS--LQG-HTKPIDSVCWDPSGELLASVSED-S-VRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPS--LLV 861 (913)
Q Consensus 789 t~~~~~~--l~~-h~~~V~sl~~spdg~~l~s~s~d-~-I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~--l~s 861 (913)
.....++ +.. +...|.+++|+|..++|++|+.. . -..+.. ....+++-.+-.+..+ .++
T Consensus 133 ~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a--------------~~~GLtaWRiL~~~Pyyk~v~ 198 (282)
T PF15492_consen 133 GYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKA--------------SSCGLTAWRILSDSPYYKQVT 198 (282)
T ss_pred cceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccc--------------cccCceEEEEcCCCCcEEEcc
Confidence 1122233 322 46789999999999987777654 2 001100 0111111111111111 111
Q ss_pred EEcCC------eEEEEECCCCcEEE-EcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 002519 862 IGCYQ------SLELWNMSENKTMT-LTAHEGLIAALAVSTETGYVASASHDKFVKLWK 913 (913)
Q Consensus 862 ~s~dg------~I~iwd~~~~~~~~-~~~h~~~V~~l~~spdg~~Lasgs~DG~I~IWd 913 (913)
...|+ +..+|.+-+.+... .......|..|..||||..||+...+|.|.||+
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~ 257 (282)
T PF15492_consen 199 SSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWE 257 (282)
T ss_pred ccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEe
Confidence 11121 22444444433332 234577899999999999999999999999996
No 301
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.74 E-value=2e-06 Score=98.40 Aligned_cols=253 Identities=11% Similarity=0.083 Sum_probs=151.0
Q ss_pred CCEEEEEeCCCcEEEEECCCCceeeEeccCCC----------Ce-EEEEECCCCCEEEEEeCCCeEEEEEcCCCCceeEE
Q 002519 645 GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSS----------LI-TDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRT 713 (913)
Q Consensus 645 g~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~----------~V-~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~ 713 (913)
+..|++++.++.|.-+|.++|+.+-....... .+ ..+.. ++..|+.++.+|.|+.+|.++ ++.+..
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~~~g~l~ald~~t-G~~~W~ 145 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGSEKGQVYALNAED-GEVAWQ 145 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--ECCEEEEEcCCCEEEEEECCC-CCCccc
Confidence 55777778888999999999888766543221 00 01111 355778888899999999988 544444
Q ss_pred eccCCCCeEE-EEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeCCceEEE----Ee--cCCCEEEEEEcCCeEEEEE
Q 002519 714 FMGHSASVMS-LDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMR----FQ--PHLGRYLAAAAENVVSILD 786 (913)
Q Consensus 714 ~~~h~~~V~s-l~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~----~s--~~~~~ll~~~~dg~I~i~D 786 (913)
..... .+.+ .... ++ .++.+..++.|..+|.++++.+..+......+. .+ ..++.++++..++.+..+|
T Consensus 146 ~~~~~-~~~ssP~v~--~~-~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d 221 (394)
T PRK11138 146 TKVAG-EALSRPVVS--DG-LVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVL 221 (394)
T ss_pred ccCCC-ceecCCEEE--CC-EEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEE
Confidence 43222 2221 1222 23 344677799999999999998877754321110 01 1235678888899999999
Q ss_pred CCCCeEEEEecCCCC-------CeEEEEEcC--CCCEEEEEeCC-eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCC
Q 002519 787 AETQACRLSLQGHTK-------PIDSVCWDP--SGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTY 856 (913)
Q Consensus 787 ~~t~~~~~~l~~h~~-------~V~sl~~sp--dg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g 856 (913)
..+++.+........ ....+..+| .+..+++++.+ .+..+|..+++ .+..... .....+. ..+
T Consensus 222 ~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~---~~W~~~~--~~~~~~~--~~~ 294 (394)
T PRK11138 222 MEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQ---IVWKREY--GSVNDFA--VDG 294 (394)
T ss_pred ccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCC---EEEeecC--CCccCcE--EEC
Confidence 999987766532110 011111122 23445555555 99999998873 2322211 1111122 246
Q ss_pred CEEEEEEcCCeEEEEECCCCcEEEEc-ccC-CCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 002519 857 PSLLVIGCYQSLELWNMSENKTMTLT-AHE-GLIAALAVSTETGYVASASHDKFVKLWK 913 (913)
Q Consensus 857 ~~l~s~s~dg~I~iwd~~~~~~~~~~-~h~-~~V~~l~~spdg~~Lasgs~DG~I~IWd 913 (913)
..|++++.++.|..+|..+++.+... ... ....+..+ .+.+|+.++.||.|+++|
T Consensus 295 ~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld 351 (394)
T PRK11138 295 GRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWIN 351 (394)
T ss_pred CEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEE
Confidence 67888899999999999999876321 111 11222222 244677778888877654
No 302
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.71 E-value=7.9e-08 Score=102.69 Aligned_cols=119 Identities=21% Similarity=0.271 Sum_probs=88.6
Q ss_pred EEEEEecCCCEEEE---EeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCceeEE
Q 002519 637 ICCHFSSDGKLLAT---GGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRT 713 (913)
Q Consensus 637 ~~l~fspdg~~Las---gs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~ 713 (913)
+++.|..+...+.. .+....+.+|....+. ...+-+|-..+++|+|+||+++|+++..|..|||-........-..
T Consensus 111 ~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~-~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Iesf 189 (390)
T KOG3914|consen 111 TAISFIREDTSVLVADKAGDVYSFDILSADSGR-CEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESF 189 (390)
T ss_pred ceeeeeeccceEEEEeecCCceeeeeecccccC-cchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhh
Confidence 33444444444443 3445556666665543 3445589999999999999999999999999999888763333344
Q ss_pred eccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEee
Q 002519 714 FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK 758 (913)
Q Consensus 714 ~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~ 758 (913)
+.||...|..++..++. +|++++.|++|++||+++++++..+.
T Consensus 190 clGH~eFVS~isl~~~~--~LlS~sGD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 190 CLGHKEFVSTISLTDNY--LLLSGSGDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred ccccHhheeeeeeccCc--eeeecCCCCcEEEEecccCCcccccc
Confidence 55899999999998753 46699999999999999999887654
No 303
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=9.3e-07 Score=94.32 Aligned_cols=245 Identities=12% Similarity=0.084 Sum_probs=149.4
Q ss_pred cceeeeEeecCCCCEEEEEEecCCC-EEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCC-EEEEEeCCCeE
Q 002519 622 SFKEANSVRASTSKVICCHFSSDGK-LLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP-RLATSSFDKTV 699 (913)
Q Consensus 622 ~~~~~~~l~~H~~~V~~l~fspdg~-~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~-~Lasgs~Dg~V 699 (913)
+|+....+.+|...|.+++|||..+ +|..++.+.+|+|.|+++...+..+..+ ..+++++|.-|.. +|+.|-..|.|
T Consensus 182 ~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~V 260 (463)
T KOG1645|consen 182 DFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMV 260 (463)
T ss_pred CcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceE
Confidence 5666667888999999999999877 7888999999999999999999999888 7899999987765 66777779999
Q ss_pred EEEEcCCCCceeEEecc--CCCCeEEEEEcC------CCCeEEEEEeCCCcEEEEEcCCC----eeeEEeeC--CceEEE
Q 002519 700 RVWDADNPGYSLRTFMG--HSASVMSLDFHP------NKDDLICSCDGDGEIRYWSINNG----SCTRVFKG--GTAQMR 765 (913)
Q Consensus 700 ~Iwdl~~~~~~~~~~~~--h~~~V~sl~fsp------~~~~ll~sgs~Dg~I~iwdl~~~----~~~~~~~~--~~~~v~ 765 (913)
.|||++.....+..+.+ ...+|..|+.-+ .+. +++.... .+..|++... .++..++. ....+.
T Consensus 261 lvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gg-lLv~~lt--~l~f~ei~~s~~~~p~vlele~pG~cismq 337 (463)
T KOG1645|consen 261 LVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGG-LLVFALT--VLQFYEIVFSAECLPCVLELEPPGICISMQ 337 (463)
T ss_pred EEEEccCCCchHhhhhhhhccCcceeecccCccccccccc-eEEeeeh--hhhhhhhhccccCCCcccccCCCcceeeee
Confidence 99999976555444433 233444444322 222 3433322 2455655432 22222222 223334
Q ss_pred EecCCCEEEEEEcCC--------eEEEEECCCCeEEEEec-CC-CCC------eEEEEEcCCCCEEEEEeCC--eEEEEE
Q 002519 766 FQPHLGRYLAAAAEN--------VVSILDAETQACRLSLQ-GH-TKP------IDSVCWDPSGELLASVSED--SVRVWT 827 (913)
Q Consensus 766 ~s~~~~~ll~~~~dg--------~I~i~D~~t~~~~~~l~-~h-~~~------V~sl~~spdg~~l~s~s~d--~I~vwd 827 (913)
+.+..+.+++....+ .+.-.|.+++..+...+ ++ ... -..+.-.++.++|+..+++ .+.+||
T Consensus 338 y~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D 417 (463)
T KOG1645|consen 338 YHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQD 417 (463)
T ss_pred ecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEec
Confidence 444446666555431 11112334443333221 12 111 0112223455677766666 899999
Q ss_pred CCCCCCCceEEEeecCCCceEEEEE-eCCCCEEEEEEcCCeEEEEECC
Q 002519 828 VGSGSEGECVHELSCNGNKFHSCVF-HPTYPSLLVIGCYQSLELWNMS 874 (913)
Q Consensus 828 l~~~~~~~~i~~~~~~~~~i~~l~~-sp~g~~l~s~s~dg~I~iwd~~ 874 (913)
..+. ..+..+... .+|..++. .-++.-++..-.|..++||..+
T Consensus 418 ~~s~---evvQ~l~~~-epv~Dicp~~~n~~syLa~LTd~~v~Iyk~e 461 (463)
T KOG1645|consen 418 PHSF---EVVQTLALS-EPVLDICPNDTNGSSYLALLTDDRVHIYKNE 461 (463)
T ss_pred cchh---heeeecccC-cceeecceeecCCcchhhheecceEEEEecC
Confidence 9876 455555443 56666654 3355556666677788888754
No 304
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.64 E-value=9.6e-08 Score=99.76 Aligned_cols=167 Identities=17% Similarity=0.256 Sum_probs=126.2
Q ss_pred EEEecC--CCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCC----CceeE
Q 002519 639 CHFSSD--GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP----GYSLR 712 (913)
Q Consensus 639 l~fspd--g~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~----~~~~~ 712 (913)
|+|+-+ |-. ++.+.+-.|-|-|++++.... |. .++.|.++.|.-.+++++.|+.+|.|.++|++.. +.+..
T Consensus 217 CawSlni~gyh-fs~G~sqqv~L~nvetg~~qs-f~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~ 293 (425)
T KOG2695|consen 217 CAWSLNIMGYH-FSVGLSQQVLLTNVETGHQQS-FQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQ 293 (425)
T ss_pred hhhhhccceee-ecccccceeEEEEeecccccc-cc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceE
Confidence 366542 223 455567788899998875332 32 5678999999998999999999999999999874 44455
Q ss_pred EeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCee---eEEeeCCceEEE-----EecCCCEEEEEEcCCeEEE
Q 002519 713 TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC---TRVFKGGTAQMR-----FQPHLGRYLAAAAENVVSI 784 (913)
Q Consensus 713 ~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~---~~~~~~~~~~v~-----~s~~~~~ll~~~~dg~I~i 784 (913)
.+. |...|+++.........|++.+.+|+|++||++.-++ +..++++++..+ +.+..+.+++++.|...+|
T Consensus 294 rly-h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRi 372 (425)
T KOG2695|consen 294 RLY-HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRI 372 (425)
T ss_pred EEE-cCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEE
Confidence 544 8899999887763344566888999999999998777 888888876543 5667789999999999999
Q ss_pred EECCCCeEEEEecCCC----CCeEEEEEc
Q 002519 785 LDAETQACRLSLQGHT----KPIDSVCWD 809 (913)
Q Consensus 785 ~D~~t~~~~~~l~~h~----~~V~sl~~s 809 (913)
|.++.+..+.++.... ..+.+++|.
T Consensus 373 Wsl~~ghLl~tipf~~s~~e~d~~sv~~~ 401 (425)
T KOG2695|consen 373 WSLDSGHLLCTIPFPYSASEVDIPSVAFD 401 (425)
T ss_pred EecccCceeeccCCCCccccccccceehh
Confidence 9999999888876432 234455554
No 305
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.62 E-value=1.3e-06 Score=101.42 Aligned_cols=175 Identities=15% Similarity=0.181 Sum_probs=130.4
Q ss_pred EEEEEeCCCcEEEEEcCCCeeeEEeeCCceEEEEe-cCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCC
Q 002519 733 LICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQ-PHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPS 811 (913)
Q Consensus 733 ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~s-~~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spd 811 (913)
.++-|+--..+..+|+++.+..+...-....+.+. .++..+++|...|+|.+-|.++.+.++++..|.+.|..+. -.
T Consensus 149 ~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfD--v~ 226 (1118)
T KOG1275|consen 149 TLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFD--VQ 226 (1118)
T ss_pred ceeecchhhheeeeecccceeeeeeeccCCceEEEEecCcEEEeecccceEEeecCCcCceeeeeeccccceeeee--cc
Confidence 34477777889999999988887766544334333 3446677777799999999999999999999999998554 46
Q ss_pred CCEEEEEeC---------C-eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCC-CEEEEEEcCCeEEEEE---CCCCc
Q 002519 812 GELLASVSE---------D-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTY-PSLLVIGCYQSLELWN---MSENK 877 (913)
Q Consensus 812 g~~l~s~s~---------d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g-~~l~s~s~dg~I~iwd---~~~~~ 877 (913)
|++|++|+. | .|+|||+|.......+.. +.++ .-+.|+|.. ..+++++..|...+.| +.+..
T Consensus 227 GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~---~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~ 302 (1118)
T KOG1275|consen 227 GNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQF---PYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPP 302 (1118)
T ss_pred CCeEEEeecccccccccccchhhhhhhhhhhccCCccc---ccCc-hhhhhcccccceEEEEecccceeeccccccCCCc
Confidence 888998874 3 589999987644333332 1221 345677864 4688889999999998 44432
Q ss_pred --EEEEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 002519 878 --TMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 913 (913)
Q Consensus 878 --~~~~~~h~~~V~~l~~spdg~~Lasgs~DG~I~IWd 913 (913)
...+......|.++++++++..++.|..+|.|.+|.
T Consensus 303 ~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 303 AGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred cceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 224445556699999999999999999999999993
No 306
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.61 E-value=3.2e-08 Score=113.43 Aligned_cols=201 Identities=16% Similarity=0.291 Sum_probs=147.2
Q ss_pred CCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCC-c
Q 002519 664 TLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDG-E 742 (913)
Q Consensus 664 ~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg-~ 742 (913)
..+..++|+.|....+|++|+-+.+.|+.|+..|.|++|++.+ +.....+.+|...|+-|.-+.+|..++.+++... .
T Consensus 1090 RFr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~s-G~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pl 1168 (1516)
T KOG1832|consen 1090 RFRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSS-GSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPL 1168 (1516)
T ss_pred hcccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccC-ccccccccccccccccccccCCcceeeeeccccCch
Confidence 3456677888999999999999999999999999999999998 6777888899999999999999988876655554 5
Q ss_pred EEEEEcCC-CeeeEEeeCCceEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEec-C---CCCCeEEEEEcCCCCEEEE
Q 002519 743 IRYWSINN-GSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQ-G---HTKPIDSVCWDPSGELLAS 817 (913)
Q Consensus 743 I~iwdl~~-~~~~~~~~~~~~~v~~s~~~~~ll~~~~dg~I~i~D~~t~~~~~~l~-~---h~~~V~sl~~spdg~~l~s 817 (913)
..+|++.. +...+.|. ...++.|+.....-++++......+||+.++.++.++. + ....-+++.|+|+.++|+-
T Consensus 1169 saLW~~~s~~~~~Hsf~-ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIln 1247 (1516)
T KOG1832|consen 1169 SALWDASSTGGPRHSFD-EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLILN 1247 (1516)
T ss_pred HHHhccccccCcccccc-ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEee
Confidence 77999875 23334443 34567777665555666666789999999987665532 1 2223367889999887764
Q ss_pred EeCCeEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE
Q 002519 818 VSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM 879 (913)
Q Consensus 818 ~s~d~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~ 879 (913)
-+ .+||++.. ..++.|..-. ....-.|||.|..+++-+ .|||+++.+.+
T Consensus 1248 dG----vLWDvR~~---~aIh~FD~ft-~~~~G~FHP~g~eVIINS-----EIwD~RTF~lL 1296 (1516)
T KOG1832|consen 1248 DG----VLWDVRIP---EAIHRFDQFT-DYGGGGFHPSGNEVIINS-----EIWDMRTFKLL 1296 (1516)
T ss_pred Cc----eeeeeccH---HHHhhhhhhe-ecccccccCCCceEEeec-----hhhhhHHHHHH
Confidence 32 58999876 3333333212 122336999999888866 58999887654
No 307
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.61 E-value=9.5e-06 Score=92.73 Aligned_cols=224 Identities=13% Similarity=0.136 Sum_probs=126.1
Q ss_pred eccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCC
Q 002519 671 LEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN 750 (913)
Q Consensus 671 l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~ 750 (913)
+....-....+.++|+++.+++ +.||...||.... ... .. .+....++|...++ +++-...+.|.|+.--+
T Consensus 28 lg~~~~~p~~ls~npngr~v~V-~g~geY~iyt~~~-~r~-k~----~G~g~~~vw~~~n~--yAv~~~~~~I~I~kn~~ 98 (443)
T PF04053_consen 28 LGSCEIYPQSLSHNPNGRFVLV-CGDGEYEIYTALA-WRN-KA----FGSGLSFVWSSRNR--YAVLESSSTIKIYKNFK 98 (443)
T ss_dssp EEE-SS--SEEEE-TTSSEEEE-EETTEEEEEETTT-TEE-EE----EEE-SEEEE-TSSE--EEEE-TTS-EEEEETTE
T ss_pred CCCCCcCCeeEEECCCCCEEEE-EcCCEEEEEEccC-Ccc-cc----cCceeEEEEecCcc--EEEEECCCeEEEEEcCc
Confidence 3344555789999999999888 4577788887432 111 11 13345688988543 45666688999974333
Q ss_pred CeeeEEeeCCceEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCC
Q 002519 751 GSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGS 830 (913)
Q Consensus 751 ~~~~~~~~~~~~~v~~s~~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d~I~vwdl~~ 830 (913)
.+..+.+......-.+.. +.++....++.|.+||..+++.+..+... .|..+.|+++|++++..+.+.+.|++.+.
T Consensus 99 ~~~~k~i~~~~~~~~If~--G~LL~~~~~~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~~i~il~~~~ 174 (443)
T PF04053_consen 99 NEVVKSIKLPFSVEKIFG--GNLLGVKSSDFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKDSIYILKYNL 174 (443)
T ss_dssp E-TT-----SS-EEEEE---SSSEEEEETTEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S-SEEEEEE-H
T ss_pred cccceEEcCCcccceEEc--CcEEEEECCCCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCCeEEEEEecc
Confidence 333334443332222222 55555566669999999999999998743 48999999999999999999888877643
Q ss_pred C------C--CCceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEE
Q 002519 831 G------S--EGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVAS 902 (913)
Q Consensus 831 ~------~--~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~Las 902 (913)
. + ....+..+..-...|.+.+|..+ .|+..+.. .|+. +..|+...+..-+.++.=+.+.+..+.|..
T Consensus 175 ~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~~~i~~ld~~~yllgy~~~~~~ly~ 249 (443)
T PF04053_consen 175 EAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-HLKY--LVNGETGIIAHLDKPLYLLGYLPKENRLYL 249 (443)
T ss_dssp HHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEE--EETTEEEEEEE-SS--EEEEEETTTTEEEE
T ss_pred hhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCcceEEEcCCceEEEEEEccCCEEEE
Confidence 2 0 00123333322567888899876 55555555 7766 556666666666778888888887788888
Q ss_pred EeCCCcEEEe
Q 002519 903 ASHDKFVKLW 912 (913)
Q Consensus 903 gs~DG~I~IW 912 (913)
...|+.|..+
T Consensus 250 ~Dr~~~v~~~ 259 (443)
T PF04053_consen 250 IDRDGNVISY 259 (443)
T ss_dssp E-TT--EEEE
T ss_pred EECCCCEEEE
Confidence 8888888765
No 308
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.60 E-value=7.8e-07 Score=89.87 Aligned_cols=193 Identities=16% Similarity=0.151 Sum_probs=110.6
Q ss_pred EEEEEEecCCCEEEEEeCCCcEEEEECCCCce------------eeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEE
Q 002519 636 VICCHFSSDGKLLATGGHDKKAVLWHTDTLKS------------KTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 703 (913)
Q Consensus 636 V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~------------~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwd 703 (913)
|+.+.|+.+ ..|+++..++.+..+...++.+ .+.+..|.+.-.+-+.+--++.++++..||.+.+++
T Consensus 39 ~~~~~~v~~-~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s 117 (319)
T KOG4714|consen 39 LSKVSLSAE-YILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFS 117 (319)
T ss_pred EEEeechhh-heeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEe
Confidence 445555433 3556665555555444333222 223333443333333344567899999999999999
Q ss_pred cCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEe-----CCCcEEEEEcCCCeeeEEe---eCCceEEEEecCCCEEEE
Q 002519 704 ADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCD-----GDGEIRYWSINNGSCTRVF---KGGTAQMRFQPHLGRYLA 775 (913)
Q Consensus 704 l~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs-----~Dg~I~iwdl~~~~~~~~~---~~~~~~v~~s~~~~~ll~ 775 (913)
.+......+.+......-.+.++...++ ++.++. .-+..++|+++-.+....- ...+..++.+|.-..+++
T Consensus 118 ~~~~~~~~~~i~~~~~~~as~~~~~~~~-~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~ 196 (319)
T KOG4714|consen 118 TDKDLALMSRIPSIHSGSASRKICRHGN-SILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVC 196 (319)
T ss_pred chHHHhhhhhcccccccccccceeeccc-EEecCCcceEeeccceeeecccccccccccccccccchhhhCCcccccEEE
Confidence 8752111111111111112233333333 332221 1234456665543322211 123566777777666555
Q ss_pred -EEcCCeEEEEECCCCe-EEEEecCCCCCeEEEEEcC-CCCEEEEEeCC-eEEEEECCC
Q 002519 776 -AAAENVVSILDAETQA-CRLSLQGHTKPIDSVCWDP-SGELLASVSED-SVRVWTVGS 830 (913)
Q Consensus 776 -~~~dg~I~i~D~~t~~-~~~~l~~h~~~V~sl~~sp-dg~~l~s~s~d-~I~vwdl~~ 830 (913)
++.||.+.+||.+... +...++.|+.+|..+-|+| ++..|+++++| .+.-||..+
T Consensus 197 cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 197 CGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred EecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 5558999999999874 4445678999999999999 55689999999 999999753
No 309
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.60 E-value=9.1e-06 Score=97.74 Aligned_cols=241 Identities=13% Similarity=0.159 Sum_probs=150.7
Q ss_pred CCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCC---C
Q 002519 632 STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP---G 708 (913)
Q Consensus 632 H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~---~ 708 (913)
..+.|.++.|.-++.-++.+..+|.|.+.|.++.. ......-...|.+++|+||...++..+.+++|.+-+-.=. .
T Consensus 67 gd~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~-~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E 145 (1265)
T KOG1920|consen 67 GDDEIVSVQFLADTNSICVITALGDIILVDPETLE-LEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAE 145 (1265)
T ss_pred CCcceEEEEEecccceEEEEecCCcEEEEcccccc-eeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhc
Confidence 34689999999999999999999999999887654 2333345678999999999999999998888876543210 1
Q ss_pred ceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeE---EeeCCceEEEEecCCCEEEEEEc----C-C
Q 002519 709 YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR---VFKGGTAQMRFQPHLGRYLAAAA----E-N 780 (913)
Q Consensus 709 ~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~---~~~~~~~~v~~s~~~~~ll~~~~----d-g 780 (913)
+.+..-....+....+-|-..... | -|+ .|.....+........ ....+...++|.-+|.++++... + .
T Consensus 146 ~~L~~d~~~~sk~v~VGwGrkeTq-f-rgs-~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~R 222 (1265)
T KOG1920|consen 146 KPLDADDERKSKFVNVGWGRKETQ-F-RGS-EGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTR 222 (1265)
T ss_pred cccccccccccccceeccccccee-e-ecc-hhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCce
Confidence 111100111122333444332111 1 221 2222222211111100 12345677999999888877432 3 7
Q ss_pred eEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC----eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCC
Q 002519 781 VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTY 856 (913)
Q Consensus 781 ~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d----~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g 856 (913)
.|+|||.+ +..-.+-.....--.+++|-|.|.++++...+ .|.+|.-+.-........+......+..++|+.++
T Consensus 223 kirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~s 301 (1265)
T KOG1920|consen 223 KIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNS 301 (1265)
T ss_pred eEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCC
Confidence 89999988 43322222233445689999999999886433 69999876544333333344445558999999999
Q ss_pred CEEEEE---EcCCeEEEEECCCCc
Q 002519 857 PSLLVI---GCYQSLELWNMSENK 877 (913)
Q Consensus 857 ~~l~s~---s~dg~I~iwd~~~~~ 877 (913)
..|++. .....|++|-+.+-.
T Consensus 302 diLAv~~~~~e~~~v~lwt~~Nyh 325 (1265)
T KOG1920|consen 302 DILAVVTSNLENSLVQLWTTGNYH 325 (1265)
T ss_pred CceeeeecccccceEEEEEecCeE
Confidence 988883 344469999887754
No 310
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.59 E-value=7.4e-07 Score=90.03 Aligned_cols=165 Identities=13% Similarity=0.147 Sum_probs=109.2
Q ss_pred eeeeEeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCc-eeeEeccCCCCeEEEEECCCCCEEEEEeC-----CC
Q 002519 624 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK-SKTNLEEHSSLITDVRFSPSMPRLATSSF-----DK 697 (913)
Q Consensus 624 ~~~~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~-~~~~l~~h~~~V~~l~fspdg~~Lasgs~-----Dg 697 (913)
...+++..|.+.-.+-+.+--++.++++..||.+.+++.+... ..+.+..-...-.+.++...++.|.++.. -+
T Consensus 80 ~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d 159 (319)
T KOG4714|consen 80 DPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQD 159 (319)
T ss_pred CceeeeeccCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeecc
Confidence 3444455566666666666677899999999999999987521 12222221222223333334444444321 23
Q ss_pred eEEEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeee----EEeeCCceEEEEecCC-CE
Q 002519 698 TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT----RVFKGGTAQMRFQPHL-GR 772 (913)
Q Consensus 698 ~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~----~~~~~~~~~v~~s~~~-~~ 772 (913)
..++|+++..+..+...+ ....|.+++-+|.-.+++++|+.||.|.+||.+..... +..+..+..+.|+|.. ..
T Consensus 160 ~~~a~~~~p~~t~~~~~~-~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~ 238 (319)
T KOG4714|consen 160 NFYANTLDPIKTLIPSKK-ALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEH 238 (319)
T ss_pred ceeeeccccccccccccc-ccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchh
Confidence 466777765332222222 23349999999999999999999999999999987432 2235567789999976 57
Q ss_pred EEEEEcCCeEEEEECCC
Q 002519 773 YLAAAAENVVSILDAET 789 (913)
Q Consensus 773 ll~~~~dg~I~i~D~~t 789 (913)
+++++.||.+..||..+
T Consensus 239 Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 239 LFTCSEDGSLWHWDAST 255 (319)
T ss_pred eeEecCCCcEEEEcCCC
Confidence 89999999999999875
No 311
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.59 E-value=1.1e-05 Score=85.14 Aligned_cols=209 Identities=14% Similarity=0.102 Sum_probs=130.0
Q ss_pred CCeEEEEEcCCCCceeEEeccC--CCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeCCce-EEEEecCCCE
Q 002519 696 DKTVRVWDADNPGYSLRTFMGH--SASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTA-QMRFQPHLGR 772 (913)
Q Consensus 696 Dg~V~Iwdl~~~~~~~~~~~~h--~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~-~v~~s~~~~~ 772 (913)
+|+|..||..+ ++.+....-. .....+.. .++++.++ +++.++.|+.||..+++.+..+..... .......++.
T Consensus 2 ~g~l~~~d~~t-G~~~W~~~~~~~~~~~~~~~-~~~~~~v~-~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~ 78 (238)
T PF13360_consen 2 DGTLSALDPRT-GKELWSYDLGPGIGGPVATA-VPDGGRVY-VASGDGNLYALDAKTGKVLWRFDLPGPISGAPVVDGGR 78 (238)
T ss_dssp TSEEEEEETTT-TEEEEEEECSSSCSSEEETE-EEETTEEE-EEETTSEEEEEETTTSEEEEEEECSSCGGSGEEEETTE
T ss_pred CCEEEEEECCC-CCEEEEEECCCCCCCccceE-EEeCCEEE-EEcCCCEEEEEECCCCCEEEEeeccccccceeeecccc
Confidence 68899999987 5555544321 12222112 22345455 668899999999999998877764211 1112445677
Q ss_pred EEEEEcCCeEEEEECCCCeEEEEe-cCCC---CCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEeecCCCc-
Q 002519 773 YLAAAAENVVSILDAETQACRLSL-QGHT---KPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNK- 846 (913)
Q Consensus 773 ll~~~~dg~I~i~D~~t~~~~~~l-~~h~---~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~- 846 (913)
+++++.++.|+.+|.++++.+..+ .... ..........++..++++..+ .|..+|++++ +.+.........
T Consensus 79 v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG---~~~w~~~~~~~~~ 155 (238)
T PF13360_consen 79 VYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTG---KLLWKYPVGEPRG 155 (238)
T ss_dssp EEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTT---EEEEEEESSTT-S
T ss_pred cccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCC---cEEEEeecCCCCC
Confidence 888888899999999999999884 3221 112222333347777777755 9999999888 455444442211
Q ss_pred ---------eEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 002519 847 ---------FHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 913 (913)
Q Consensus 847 ---------i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~DG~I~IWd 913 (913)
+..-.+..++ .+++++.++.+..+|+.+++.+.... ...+..+ ...++..|+.++.|+.|.+||
T Consensus 156 ~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~-~~~~~~~-~~~~~~~l~~~~~~~~l~~~d 228 (238)
T PF13360_consen 156 SSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKP-ISGIYSL-PSVDGGTLYVTSSDGRLYALD 228 (238)
T ss_dssp S--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEEC-SS-ECEC-EECCCTEEEEEETTTEEEEEE
T ss_pred CcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEec-CCCccCC-ceeeCCEEEEEeCCCEEEEEE
Confidence 1122222344 78888888854444999999763222 3333332 346777888888999999886
No 312
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.58 E-value=3.3e-05 Score=86.98 Aligned_cols=256 Identities=15% Similarity=0.160 Sum_probs=151.8
Q ss_pred ecCCCEEEEEe---------CCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCceeE
Q 002519 642 SSDGKLLATGG---------HDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLR 712 (913)
Q Consensus 642 spdg~~Lasgs---------~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~ 712 (913)
|||+++++... ..+.+.|||+++++....... ...+....|+|+|+.|+... ++.|.++++.++ ...+
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~-~~~~ 77 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATG-QETQ 77 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTS-EEEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCC-CeEE
Confidence 67888777743 346789999998765444433 67789999999999999887 578999988763 2222
Q ss_pred -Eecc-------C---------CCCeEEEEEcCCCCeEEEEEeCCCcEEEEE----------------------------
Q 002519 713 -TFMG-------H---------SASVMSLDFHPNKDDLICSCDGDGEIRYWS---------------------------- 747 (913)
Q Consensus 713 -~~~~-------h---------~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwd---------------------------- 747 (913)
+..+ - -+.-..+.|+||++.|++.--++..|+.+.
T Consensus 78 lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~ 157 (353)
T PF00930_consen 78 LTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPR 157 (353)
T ss_dssp SES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---E
T ss_pred eccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCc
Confidence 2222 0 122356889999998887665555544443
Q ss_pred -------cCCCeeeEEe-e-------CCceEEEEecCCCEEEEEEcC-----CeEEEEECCCCeEEEEecC-CCCCe---
Q 002519 748 -------INNGSCTRVF-K-------GGTAQMRFQPHLGRYLAAAAE-----NVVSILDAETQACRLSLQG-HTKPI--- 803 (913)
Q Consensus 748 -------l~~~~~~~~~-~-------~~~~~v~~s~~~~~ll~~~~d-----g~I~i~D~~t~~~~~~l~~-h~~~V--- 803 (913)
+.+++....- . .-...+.|.+++..+++.-.+ ..+.++|..++++...+.. ....|
T Consensus 158 v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~ 237 (353)
T PF00930_consen 158 VSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVY 237 (353)
T ss_dssp EEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSS
T ss_pred eEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeee
Confidence 3332221100 0 012346788887745554432 2567778877754433322 22332
Q ss_pred EEEEEc-CCCC-EEEEEeCC---eEEEEECCCCCCCceEEEeecCCCceEE-EEEeCCCCEEEEEEcC-----CeEEEEE
Q 002519 804 DSVCWD-PSGE-LLASVSED---SVRVWTVGSGSEGECVHELSCNGNKFHS-CVFHPTYPSLLVIGCY-----QSLELWN 872 (913)
Q Consensus 804 ~sl~~s-pdg~-~l~s~s~d---~I~vwdl~~~~~~~~i~~~~~~~~~i~~-l~~sp~g~~l~s~s~d-----g~I~iwd 872 (913)
..+.|. +++. +|.....+ .|.+++...+ ....+......|.. +.|+++++.|+..+.. ..|+..+
T Consensus 238 ~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~----~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~ 313 (353)
T PF00930_consen 238 DPPHFLGPDGNEFLWISERDGYRHLYLYDLDGG----KPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVS 313 (353)
T ss_dssp SEEEE-TTTSSEEEEEEETTSSEEEEEEETTSS----EEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEE
T ss_pred cccccccCCCCEEEEEEEcCCCcEEEEEccccc----ceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEE
Confidence 355665 6666 44444444 6777887654 23455555556644 6788888877665553 2677778
Q ss_pred CC-CCcEEEEcccCCCeEEEEEeCCCCEEEEEe
Q 002519 873 MS-ENKTMTLTAHEGLIAALAVSTETGYVASAS 904 (913)
Q Consensus 873 ~~-~~~~~~~~~h~~~V~~l~~spdg~~Lasgs 904 (913)
+. .+....+....+....+.|||++++++..+
T Consensus 314 ~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~~ 346 (353)
T PF00930_consen 314 LDSGGEPKCLTCEDGDHYSASFSPDGKYYVDTY 346 (353)
T ss_dssp TTETTEEEESSTTSSTTEEEEE-TTSSEEEEEE
T ss_pred eCCCCCeEeccCCCCCceEEEECCCCCEEEEEE
Confidence 88 666666665555447999999999876544
No 313
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.55 E-value=1.8e-06 Score=92.42 Aligned_cols=158 Identities=13% Similarity=0.114 Sum_probs=106.3
Q ss_pred CEEEEEEecCCCEEEEEeCCCcEEEEECCCCc----eeeEeccCCCCeEEEEECCCCCEEEEEe---CCCeEEEEEcCCC
Q 002519 635 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLK----SKTNLEEHSSLITDVRFSPSMPRLATSS---FDKTVRVWDADNP 707 (913)
Q Consensus 635 ~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~----~~~~l~~h~~~V~~l~fspdg~~Lasgs---~Dg~V~Iwdl~~~ 707 (913)
.+..+.+++++++||++..++...++++.... ....+. -...-+++.|..+...+..+. +...+.+|....
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~-v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~- 141 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSC-VPKRPTAISFIREDTSVLVADKAGDVYSFDILSADS- 141 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEee-cccCcceeeeeeccceEEEEeecCCceeeeeecccc-
Confidence 34556677888899988888887777765322 222222 222334455555555544443 344555565553
Q ss_pred CceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeC-C---ceEEEEecCCCEEEEEEcCCeEE
Q 002519 708 GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG-G---TAQMRFQPHLGRYLAAAAENVVS 783 (913)
Q Consensus 708 ~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~-~---~~~v~~s~~~~~ll~~~~dg~I~ 783 (913)
.+.+...||-..++.|+|+||+.+ |++++.|..|++-....-..+..|-- + +..+++.++ ..+++++.|++|+
T Consensus 142 -~~~~~~lGhvSml~dVavS~D~~~-IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~tlr 218 (390)
T KOG3914|consen 142 -GRCEPILGHVSMLLDVAVSPDDQF-IITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLR 218 (390)
T ss_pred -cCcchhhhhhhhhheeeecCCCCE-EEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCcEE
Confidence 445666789999999999999865 55999999999988776655555432 2 344555444 4578999999999
Q ss_pred EEECCCCeEEEEec
Q 002519 784 ILDAETQACRLSLQ 797 (913)
Q Consensus 784 i~D~~t~~~~~~l~ 797 (913)
+||+++++.+.++.
T Consensus 219 ~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 219 LWDITSGKLLDTCD 232 (390)
T ss_pred EEecccCCcccccc
Confidence 99999999886654
No 314
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.55 E-value=6.1e-05 Score=76.50 Aligned_cols=255 Identities=14% Similarity=0.107 Sum_probs=132.3
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCceeEEeccCCCCeEE
Q 002519 644 DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMS 723 (913)
Q Consensus 644 dg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~s 723 (913)
-|++++.|++.|.+++.++++|.....+.....--......+++..|.+|+.|++.+..|.++ ..++...+...+...+
T Consensus 62 vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~-~~cVykskcgG~~f~s 140 (354)
T KOG4649|consen 62 VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKT-YGCVYKSKCGGGTFVS 140 (354)
T ss_pred ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccc-cceEEecccCCceecc
Confidence 366899999999999999999987776654333222334567889999999999999999998 5555555533333334
Q ss_pred EEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeE--Eee--CCc--eEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEec
Q 002519 724 LDFHPNKDDLICSCDGDGEIRYWSINNGSCTR--VFK--GGT--AQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQ 797 (913)
Q Consensus 724 l~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~--~~~--~~~--~~v~~s~~~~~ll~~~~dg~I~i~D~~t~~~~~~l~ 797 (913)
-+..+-...++ .+...|.|.--..+...... .+. +++ ..++. +..+..++-||.+.-+| ..++.+..+.
T Consensus 141 P~i~~g~~sly-~a~t~G~vlavt~~~~~~~~~w~~~~~~PiF~splcv---~~sv~i~~VdG~l~~f~-~sG~qvwr~~ 215 (354)
T KOG4649|consen 141 PVIAPGDGSLY-AAITAGAVLAVTKNPYSSTEFWAATRFGPIFASPLCV---GSSVIITTVDGVLTSFD-ESGRQVWRPA 215 (354)
T ss_pred ceecCCCceEE-EEeccceEEEEccCCCCcceehhhhcCCccccCceec---cceEEEEEeccEEEEEc-CCCcEEEeec
Confidence 44555333343 44445666555555442111 111 111 01111 23344455566666666 4445444333
Q ss_pred CCCCCeEE-EEEc-CCCCEEEEEeCC---------eEEEEECCCCCCCceEEEeecCCCceEEEEEeC----CCCEEEEE
Q 002519 798 GHTKPIDS-VCWD-PSGELLASVSED---------SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHP----TYPSLLVI 862 (913)
Q Consensus 798 ~h~~~V~s-l~~s-pdg~~l~s~s~d---------~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp----~g~~l~s~ 862 (913)
. .++|.. -+-+ |....|..+.++ .-.+|...++. ..+.... +-..+.++. ..+++..+
T Consensus 216 t-~GpIf~~Pc~s~Ps~q~i~~~~~~Cf~~~~p~~ghL~w~~~~g~---t~~vy~~---p~l~F~~h~~~~S~~~ll~~~ 288 (354)
T KOG4649|consen 216 T-KGPIFMEPCESRPSCQQISLENENCFCAPLPIAGHLLWATQSGT---TLHVYLS---PKLRFDLHSPGISYPKLLRRS 288 (354)
T ss_pred C-CCceecccccCCCcceEEEEecCCeEEEeccccceEEEEecCCc---EEEEEeC---cccceeccCCCCcchhhhhhh
Confidence 1 222211 1111 222333333333 33456655541 1111110 000122221 13457778
Q ss_pred EcCCeEEEEECCCCcEEEEcccCCCeEEE---E-----E-eC---CCCEEEEEeCCCcEEEeC
Q 002519 863 GCYQSLELWNMSENKTMTLTAHEGLIAAL---A-----V-ST---ETGYVASASHDKFVKLWK 913 (913)
Q Consensus 863 s~dg~I~iwd~~~~~~~~~~~h~~~V~~l---~-----~-sp---dg~~Lasgs~DG~I~IWd 913 (913)
+.||++.|.-.+.. +..+..|.+.+-.+ . | +| +| +|+.|+.|..|+-||
T Consensus 289 s~dgkv~il~~~~s-l~~~~s~~g~lq~~~~~el~~eIFsSPvii~g-rl~igcRDdYv~cld 349 (354)
T KOG4649|consen 289 SGDGKVMILMTSKS-LAEISSNGGELQNLEAIELSNEIFSSPVIIDG-RLLIGCRDDYVRCLD 349 (354)
T ss_pred cCCCcEEEEEeccc-ccccccCCCccceEEEeecCcccccCCeEEcc-EEEEEEccCeEEEEe
Confidence 88998888844322 12223333322211 1 1 22 34 577788999999986
No 315
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.55 E-value=5.8e-05 Score=82.90 Aligned_cols=267 Identities=13% Similarity=0.107 Sum_probs=137.6
Q ss_pred EEEecCCCEEEEEe-CCC--cEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCceeEEec
Q 002519 639 CHFSSDGKLLATGG-HDK--KAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFM 715 (913)
Q Consensus 639 l~fspdg~~Lasgs-~Dg--~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~ 715 (913)
=+|..||+.|+.++ .|| .+++.|+++++......+.........++++++.|+....+..|+..|+++ .+....+.
T Consensus 41 ~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T-~e~~~vy~ 119 (386)
T PF14583_consen 41 NCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDT-LEERVVYE 119 (386)
T ss_dssp --B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT---EEEEEE
T ss_pred CCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCc-CcEEEEEE
Confidence 35678997666555 454 567778888775554444333344567788888887776677899999998 44445555
Q ss_pred cCCCCeEEEEEc--CCCCeEEEEEe----------------------CCCcEEEEEcCCCeeeEEeeCCc--eEEEEecC
Q 002519 716 GHSASVMSLDFH--PNKDDLICSCD----------------------GDGEIRYWSINNGSCTRVFKGGT--AQMRFQPH 769 (913)
Q Consensus 716 ~h~~~V~sl~fs--p~~~~ll~sgs----------------------~Dg~I~iwdl~~~~~~~~~~~~~--~~v~~s~~ 769 (913)
-....+-...|. .++. +++..- -.+.|...|+.+++....+.... ..+.|+|.
T Consensus 120 ~p~~~~g~gt~v~n~d~t-~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~ 198 (386)
T PF14583_consen 120 VPDDWKGYGTWVANSDCT-KLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPT 198 (386)
T ss_dssp --TTEEEEEEEEE-TTSS-EEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEETT
T ss_pred CCcccccccceeeCCCcc-EEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCCC
Confidence 555555555564 2333 332211 12456677888887766665543 67889999
Q ss_pred CCEEEEEEcCC-----eEEEEECCC-CeEEEEecCCC--CCeEEEEEcCCCCEEEEEe-----CC-eEEEEECCCCCCCc
Q 002519 770 LGRYLAAAAEN-----VVSILDAET-QACRLSLQGHT--KPIDSVCWDPSGELLASVS-----ED-SVRVWTVGSGSEGE 835 (913)
Q Consensus 770 ~~~ll~~~~dg-----~I~i~D~~t-~~~~~~l~~h~--~~V~sl~~spdg~~l~s~s-----~d-~I~vwdl~~~~~~~ 835 (913)
...+++-|.+| .-+||-+++ +.....+..+. ..+..=-|.+||..|.--+ .+ .|.-+|+.+++. .
T Consensus 199 dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~-~ 277 (386)
T PF14583_consen 199 DPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGER-R 277 (386)
T ss_dssp EEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--E-E
T ss_pred CCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCc-e
Confidence 98888877654 225564433 23333333332 2344556899999555432 23 677788877633 2
Q ss_pred eEEEeecCCCceEEEEEeCCCCEEEEEEcCC----------------eEEEEECCCCcEEEEcccCC-----------Ce
Q 002519 836 CVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ----------------SLELWNMSENKTMTLTAHEG-----------LI 888 (913)
Q Consensus 836 ~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg----------------~I~iwd~~~~~~~~~~~h~~-----------~V 888 (913)
.+... .....+-.++||++++-=+.|. -|+++++..+....+..|.. .=
T Consensus 278 ~~~~~----p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~h 353 (386)
T PF14583_consen 278 RLMEM----PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTH 353 (386)
T ss_dssp EEEEE-----SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE-------BTTBSSTT-
T ss_pred EEEeC----CceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCCCccCC
Confidence 22221 2344556678888666555542 56778888877665544432 12
Q ss_pred EEEEEeCCCCEEEE-EeCCCcEEEe
Q 002519 889 AALAVSTETGYVAS-ASHDKFVKLW 912 (913)
Q Consensus 889 ~~l~~spdg~~Las-gs~DG~I~IW 912 (913)
....|+||+++|+- +...|...||
T Consensus 354 Php~FSPDgk~VlF~Sd~~G~~~vY 378 (386)
T PF14583_consen 354 PHPSFSPDGKWVLFRSDMEGPPAVY 378 (386)
T ss_dssp ---EE-TTSSEEEEEE-TTSS-EEE
T ss_pred CCCccCCCCCEEEEECCCCCCccEE
Confidence 45789999997665 4457877765
No 316
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.52 E-value=2e-05 Score=81.60 Aligned_cols=189 Identities=15% Similarity=0.117 Sum_probs=111.2
Q ss_pred CCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEecc-------CCCCeEEEEECCC------CCEEEEEeCCCeEE
Q 002519 634 SKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE-------HSSLITDVRFSPS------MPRLATSSFDKTVR 700 (913)
Q Consensus 634 ~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~-------h~~~V~~l~fspd------g~~Lasgs~Dg~V~ 700 (913)
-.-+-++||||+.+||.+...|+|+|||+.. ..+..+.. -...|..+.|.+- ...|++-..+|.++
T Consensus 44 PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~ 122 (282)
T PF15492_consen 44 PQWRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLR 122 (282)
T ss_pred chheEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceee
Confidence 3457799999999999999999999999875 33333332 2356777777543 22567777888888
Q ss_pred EEEcCC----CCceeEEec---cCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeCCceEEEEecCCCEE
Q 002519 701 VWDADN----PGYSLRTFM---GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRY 773 (913)
Q Consensus 701 Iwdl~~----~~~~~~~~~---~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~s~~~~~l 773 (913)
-|-+.. +.....+|. .+...|.++.|+|..+-|++.|+....-..+. ....+.++-++..+..++
T Consensus 123 Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~--------a~~~GLtaWRiL~~~Pyy 194 (282)
T PF15492_consen 123 SYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSK--------ASSCGLTAWRILSDSPYY 194 (282)
T ss_pred eEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCcccc--------ccccCceEEEEcCCCCcE
Confidence 887632 112222222 34778999999998776665555433211100 001111111111111111
Q ss_pred E--EEEcCC------eEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCC
Q 002519 774 L--AAAAEN------VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSG 831 (913)
Q Consensus 774 l--~~~~dg------~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~ 831 (913)
. +...|+ +..+|.+-+.+.........+.|..+..+|||.+||+...+ .|.+|++.+-
T Consensus 195 k~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL 261 (282)
T PF15492_consen 195 KQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSL 261 (282)
T ss_pred EEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcc
Confidence 1 111111 11233322222222222356789999999999999999988 9999999654
No 317
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=1.3e-06 Score=94.30 Aligned_cols=232 Identities=13% Similarity=0.145 Sum_probs=160.7
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCC--CCceeEEeccCCCCeEEEEEcCCCCeEEEEEeC-CCcEEEEEcCC
Q 002519 674 HSSLITDVRFSPSMPRLATSSFDKTVRVWDADN--PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDG-DGEIRYWSINN 750 (913)
Q Consensus 674 h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~--~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~-Dg~I~iwdl~~ 750 (913)
|.+.|+.+.-+ ..+++++++.||.++.|.-.. +-..+..+..|...|.+++.+-++ .++++.+. |..++++|+++
T Consensus 8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg-~L~~Sv~d~Dhs~KvfDvEn 85 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDG-WLFRSVEDPDHSVKVFDVEN 85 (558)
T ss_pred ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccc-eeEeeccCcccceeEEEeec
Confidence 66667766544 456999999999999997643 224456677888899999988875 46778676 99999999988
Q ss_pred CeeeEEeeC--CceEEEEecCCC----EEEEEE-cCCeEEEEECCCCe--EEEEecCCCCCeEEEEEcCCCCEEEEEeCC
Q 002519 751 GSCTRVFKG--GTAQMRFQPHLG----RYLAAA-AENVVSILDAETQA--CRLSLQGHTKPIDSVCWDPSGELLASVSED 821 (913)
Q Consensus 751 ~~~~~~~~~--~~~~v~~s~~~~----~ll~~~-~dg~I~i~D~~t~~--~~~~l~~h~~~V~sl~~spdg~~l~s~s~d 821 (913)
-..+..++. -...++|....+ .+++.. .++.|.++|-.... ....-+-|..+|.++.+.+.+..+++....
T Consensus 86 ~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~ 165 (558)
T KOG0882|consen 86 FDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDIS 165 (558)
T ss_pred cchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeecccc
Confidence 765543332 122233332222 333332 37899999988763 333444599999999999999999888877
Q ss_pred -eEEEEECCC-CC--C---------CceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEc------
Q 002519 822 -SVRVWTVGS-GS--E---------GECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLT------ 882 (913)
Q Consensus 822 -~I~vwdl~~-~~--~---------~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~------ 882 (913)
-|..|.... .. + ...+..+.-......++.|+|++..+.+.+.|..|+++++.+++++...
T Consensus 166 gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~ 245 (558)
T KOG0882|consen 166 GMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTD 245 (558)
T ss_pred ceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchh
Confidence 899998863 00 0 0112222333556789999999999999999999999999998754111
Q ss_pred ---------------------------ccCC-CeEEEEEeCCCCEEEEEeCCC
Q 002519 883 ---------------------------AHEG-LIAALAVSTETGYVASASHDK 907 (913)
Q Consensus 883 ---------------------------~h~~-~V~~l~~spdg~~Lasgs~DG 907 (913)
.|.. .-..++|...+++|+.|+-=|
T Consensus 246 ~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g 298 (558)
T KOG0882|consen 246 AQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG 298 (558)
T ss_pred hhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee
Confidence 1222 235678888899888876543
No 318
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.49 E-value=3.1e-06 Score=97.69 Aligned_cols=181 Identities=18% Similarity=0.228 Sum_probs=127.6
Q ss_pred CCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCceeE
Q 002519 633 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLR 712 (913)
Q Consensus 633 ~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~ 712 (913)
.+.++|++++ +++|+.|+.+|.|++++.... . .+...|+.. .-+|.++++||.||+|.|..+.++.. ..
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~-~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~-~~ 107 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQGN-P-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDE-IT 107 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecCCc-c-ccccccccc------ccCCceEEEecCCCcEEEeeccCCcc-ce
Confidence 4568888886 569999999999999997643 2 333344443 56799999999999999999987433 33
Q ss_pred EeccCCCCeEEEEEcCC----CCeEEEEEeCCCcEEEEEcCC---Ce--eeEEeeCCceEEEEecCCCEEEEEEcCCeEE
Q 002519 713 TFMGHSASVMSLDFHPN----KDDLICSCDGDGEIRYWSINN---GS--CTRVFKGGTAQMRFQPHLGRYLAAAAENVVS 783 (913)
Q Consensus 713 ~~~~h~~~V~sl~fsp~----~~~ll~sgs~Dg~I~iwdl~~---~~--~~~~~~~~~~~v~~s~~~~~ll~~~~dg~I~ 783 (913)
.+ ....++.+|+++|+ ....+++|+.-| +.++.-+- .. ......|.+.++.|. +.+++-..|-.|+
T Consensus 108 ~~-df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~---g~lIAWand~Gv~ 182 (846)
T KOG2066|consen 108 QY-DFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR---GNLIAWANDDGVK 182 (846)
T ss_pred eE-ecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec---CcEEEEecCCCcE
Confidence 33 24578999999998 222455888888 77765331 11 123334566666665 5688888889999
Q ss_pred EEECCCCeEEEEecCCCCC------eEEEEEcCCCCEEEEEeCCeEEEEECCC
Q 002519 784 ILDAETQACRLSLQGHTKP------IDSVCWDPSGELLASVSEDSVRVWTVGS 830 (913)
Q Consensus 784 i~D~~t~~~~~~l~~h~~~------V~sl~~spdg~~l~s~s~d~I~vwdl~~ 830 (913)
+||+.++..+..+...... -..+.|.++ ..|+.|-.|+|+|..++.
T Consensus 183 vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~-~~LVIGW~d~v~i~~I~~ 234 (846)
T KOG2066|consen 183 VYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDE-DRLVIGWGDSVKICSIKK 234 (846)
T ss_pred EEeccccceeeccCCCCCCCCcccCCCceEecCC-CeEEEecCCeEEEEEEec
Confidence 9999998887776543333 235677754 466778888999998873
No 319
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.47 E-value=6.3e-05 Score=88.43 Aligned_cols=256 Identities=12% Similarity=0.104 Sum_probs=148.7
Q ss_pred CCEEEEEeCCCcEEEEECCCCceeeEeccCCCC------eE--EEEECCCCCEEEEEeCCCeEEEEEcCCCCceeEEecc
Q 002519 645 GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSL------IT--DVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMG 716 (913)
Q Consensus 645 g~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~------V~--~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~ 716 (913)
+..+++++.++.|+-+|..+++.+-.+...... +. .+.+. ++..++.++.++.|+.+|.++ ++.+-.+..
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~T-G~~~W~~~~ 138 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAET-GKQVWKFGN 138 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCC-CCEeeeecC
Confidence 346667777899999999999888776543320 10 11111 226888888999999999998 555544432
Q ss_pred CCCC-----e-EEEEEcCCCCeEEEEEe---------CCCcEEEEEcCCCeeeEEeeCCc--------------------
Q 002519 717 HSAS-----V-MSLDFHPNKDDLICSCD---------GDGEIRYWSINNGSCTRVFKGGT-------------------- 761 (913)
Q Consensus 717 h~~~-----V-~sl~fsp~~~~ll~sgs---------~Dg~I~iwdl~~~~~~~~~~~~~-------------------- 761 (913)
.... | .+..+. +..++ .++ .+|.|..+|..+++.+..++...
T Consensus 139 ~~~~~~~~~i~ssP~v~--~~~v~-vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g 215 (488)
T cd00216 139 NDQVPPGYTMTGAPTIV--KKLVI-IGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGG 215 (488)
T ss_pred CCCcCcceEecCCCEEE--CCEEE-EeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCC
Confidence 2210 1 112222 23333 443 46889999999999887765321
Q ss_pred ----eEEEEecCCCEEEEEEcCC------------------eEEEEECCCCeEEEEecCCCCCeE------EEEEc----
Q 002519 762 ----AQMRFQPHLGRYLAAAAEN------------------VVSILDAETQACRLSLQGHTKPID------SVCWD---- 809 (913)
Q Consensus 762 ----~~v~~s~~~~~ll~~~~dg------------------~I~i~D~~t~~~~~~l~~h~~~V~------sl~~s---- 809 (913)
....+.+.++.+++++.++ .|.-+|.++++.+..+..-...+. ...+.
T Consensus 216 ~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~ 295 (488)
T cd00216 216 GTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKP 295 (488)
T ss_pred CCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccc
Confidence 0233444567788887654 799999999999988753111110 01111
Q ss_pred CCCC---EEEEEeCC-eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEEE------------------EcCCe
Q 002519 810 PSGE---LLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVI------------------GCYQS 867 (913)
Q Consensus 810 pdg~---~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~------------------s~dg~ 867 (913)
-++. ++++++.+ .+..+|.++++ .+...... ...+..+| ..++++ ..+|.
T Consensus 296 ~~g~~~~~V~~g~~~G~l~ald~~tG~---~~W~~~~~---~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~ 367 (488)
T cd00216 296 KDGKPVPAIVHAPKNGFFYVLDRTTGK---LISARPEV---EQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGG 367 (488)
T ss_pred cCCCeeEEEEEECCCceEEEEECCCCc---EeeEeEee---ccccccCC--ceEEEccccccccCcccccCCCCCCCceE
Confidence 1343 56667766 89999998884 33322211 11122333 233332 23578
Q ss_pred EEEEECCCCcEEEEcccC---------CCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 002519 868 LELWNMSENKTMTLTAHE---------GLIAALAVSTETGYVASASHDKFVKLWK 913 (913)
Q Consensus 868 I~iwd~~~~~~~~~~~h~---------~~V~~l~~spdg~~Lasgs~DG~I~IWd 913 (913)
|.-+|+.+++.+-..... .....-...-.+.+|+.++.||.|+.+|
T Consensus 368 l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald 422 (488)
T cd00216 368 LAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFD 422 (488)
T ss_pred EEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEE
Confidence 888999999877222211 1111111112456788888899888764
No 320
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.46 E-value=2.3e-05 Score=89.59 Aligned_cols=274 Identities=12% Similarity=0.102 Sum_probs=152.8
Q ss_pred CCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeE-eccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCce
Q 002519 632 STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTN-LEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYS 710 (913)
Q Consensus 632 H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~-l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~ 710 (913)
|...|.--+++..+++|+.|+.-|.|++|+-..+..... ..+-.+.+..+..+++..++|.|+..|.|.|+-+......
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~ 111 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPR 111 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCC
Confidence 344555566777889999999999999999876654333 3334556667778888889999999999999988763221
Q ss_pred eE-----EeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCC-----eeeEEeeCCceEEEEecCCCEEEEEEcCC
Q 002519 711 LR-----TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG-----SCTRVFKGGTAQMRFQPHLGRYLAAAAEN 780 (913)
Q Consensus 711 ~~-----~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~-----~~~~~~~~~~~~v~~s~~~~~ll~~~~dg 780 (913)
.. .-+.|...|++++|++++..++ +|+..|.|.+-.+... +....+......+-++.-..++++++.-.
T Consensus 112 ~~~~~t~~d~~~~~rVTal~Ws~~~~k~y-sGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q~~LLVStl~r 190 (726)
T KOG3621|consen 112 DLDYVTPCDKSHKCRVTALEWSKNGMKLY-SGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQSYLLVSTLTR 190 (726)
T ss_pred cceeeccccccCCceEEEEEecccccEEe-ecCCCceEEEEEechhhhhccccceeeccCcceEEeecccceehHhhhhh
Confidence 11 1124788999999999988766 9999999999888772 11111222222333333344555444433
Q ss_pred eEEEEECCCCeEEEEecCCCCC--eEEEEEcCC----CCEEEEEeCCeEEEEECCCCCCCceEEEeec-----------C
Q 002519 781 VVSILDAETQACRLSLQGHTKP--IDSVCWDPS----GELLASVSEDSVRVWTVGSGSEGECVHELSC-----------N 843 (913)
Q Consensus 781 ~I~i~D~~t~~~~~~l~~h~~~--V~sl~~spd----g~~l~s~s~d~I~vwdl~~~~~~~~i~~~~~-----------~ 843 (913)
.+ +++.+..+....=+...+. -...||-|. ..-++.++.-..|+|..+-..+....+.++. +
T Consensus 191 ~~-Lc~tE~eti~QIG~k~R~~~~~~GACF~~g~~~~q~~~IycaRPG~RlWead~~G~V~~Thqfk~ala~~p~p~i~~ 269 (726)
T KOG3621|consen 191 CI-LCQTEAETITQIGKKPRKSLIDFGACFFPGQCKAQKPQIYCARPGLRLWEADFAGEVIKTHQFKDALARPPAPEIPI 269 (726)
T ss_pred hh-eeecchhHHHHhcCCCcCCccccceEEeeccccCCCceEEEecCCCceEEeecceeEEEeeehhhhhccCCCCcccC
Confidence 33 3333332211000001111 344566654 2333344444577887643221111111110 0
Q ss_pred C----------------CceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEeCCC
Q 002519 844 G----------------NKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDK 907 (913)
Q Consensus 844 ~----------------~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~DG 907 (913)
. -....+.+- .+..+++-+.-| |+|+|..+..++........|.+++.+.+ -|+.-..||
T Consensus 270 ~s~esp~~~~~~~~~q~ls~~k~~~l-~~~~vLa~te~G-iyv~d~~~~~v~l~se~~~DI~dVs~~~n--eiFvL~~d~ 345 (726)
T KOG3621|consen 270 RSLESPNQRSLPSGTQHLSLSKSSTL-HSDRVLAWTEVG-IYVFDSNNSQVYLWSEGGHDILDVSHCGN--EIFVLNLDR 345 (726)
T ss_pred CCcCCccccCCCCCccccccceeEEe-ecceEEEeecce-EEEEEeccceEEEeecCCCceeEEeecCc--eEEEEecCC
Confidence 0 001111111 122344444444 88899888887766655666666665433 344444455
Q ss_pred cEEE
Q 002519 908 FVKL 911 (913)
Q Consensus 908 ~I~I 911 (913)
.+++
T Consensus 346 ~l~~ 349 (726)
T KOG3621|consen 346 GLKV 349 (726)
T ss_pred ceeE
Confidence 4443
No 321
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.45 E-value=3.4e-05 Score=89.29 Aligned_cols=226 Identities=14% Similarity=0.086 Sum_probs=135.3
Q ss_pred cCCCEEEEEeC-CCcEEEEECCCCceeeEecc-CCCCeEEEEE-------------------CCCCCEEEEEe-CCCeEE
Q 002519 643 SDGKLLATGGH-DKKAVLWHTDTLKSKTNLEE-HSSLITDVRF-------------------SPSMPRLATSS-FDKTVR 700 (913)
Q Consensus 643 pdg~~Lasgs~-Dg~V~vwd~~~~~~~~~l~~-h~~~V~~l~f-------------------spdg~~Lasgs-~Dg~V~ 700 (913)
-||++|+.-.. +..|...+++..++...++- ....+..++| .+||+.|...+ ..+.+.
T Consensus 139 ydGr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vS 218 (635)
T PRK02888 139 YDGRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFT 218 (635)
T ss_pred cceeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEE
Confidence 37888888764 56677777776665554432 1122333333 34554442222 245666
Q ss_pred EEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEe---CCCcEEEEEcCCCeeeEEeeCCceEEEEecCCCEEEEEE
Q 002519 701 VWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCD---GDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAA 777 (913)
Q Consensus 701 Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs---~Dg~I~iwdl~~~~~~~~~~~~~~~v~~s~~~~~ll~~~ 777 (913)
++|.++ .+....+.- ......+.++++++.+++++. ...++...+..+...+..|.-.. ...+..++++.++
T Consensus 219 vID~et-meV~~qV~V-dgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~-iea~vkdGK~~~V-- 293 (635)
T PRK02888 219 AVDAET-MEVAWQVMV-DGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIAR-IEEAVKAGKFKTI-- 293 (635)
T ss_pred EEECcc-ceEEEEEEe-CCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHH-HHHhhhCCCEEEE--
Confidence 777765 333333321 224456788999888876652 22344444443333222222111 1133445665554
Q ss_pred cCCeEEEEECCC-----CeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC--eEEEEECCCCCC---------CceEEEee
Q 002519 778 AENVVSILDAET-----QACRLSLQGHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSGSE---------GECVHELS 841 (913)
Q Consensus 778 ~dg~I~i~D~~t-----~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d--~I~vwdl~~~~~---------~~~i~~~~ 841 (913)
.++.|.++|.++ .+.+..+. -......|.++|||+++++++.- +|.|+|+.+... ...+.+..
T Consensus 294 ~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaeve 372 (635)
T PRK02888 294 GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPE 372 (635)
T ss_pred CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeec
Confidence 467899999998 34555444 34567889999999988887764 999999977532 11233333
Q ss_pred cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 002519 842 CNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSE 875 (913)
Q Consensus 842 ~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~ 875 (913)
. +..-...+|.++|..+.+.--|..|..|++..
T Consensus 373 v-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 373 L-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred c-CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 3 33344568899998888888899999999876
No 322
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.44 E-value=4.9e-06 Score=96.88 Aligned_cols=182 Identities=13% Similarity=0.137 Sum_probs=134.3
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeCCceEE-
Q 002519 686 SMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQM- 764 (913)
Q Consensus 686 dg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v- 764 (913)
+...++.|+.-..+..+|+++ .+..+...-....|+-++.+ ++++++|...|+|.+-|.++.+.++++..+...+
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~-~~e~r~~~v~a~~v~imR~N---nr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siS 221 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNT-EKETRTTNVSASGVTIMRYN---NRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSIS 221 (1118)
T ss_pred CCcceeecchhhheeeeeccc-ceeeeeeeccCCceEEEEec---CcEEEeecccceEEeecCCcCceeeeeecccccee
Confidence 455778888888888999987 44555544444456666654 4467799999999999999999999999887665
Q ss_pred EEecCCCEEEEEEc---------CCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCC--EEEEEeCCeEEEEECCCCCC
Q 002519 765 RFQPHLGRYLAAAA---------ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGE--LLASVSEDSVRVWTVGSGSE 833 (913)
Q Consensus 765 ~~s~~~~~ll~~~~---------dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~--~l~s~s~d~I~vwdl~~~~~ 833 (913)
.|+..|+.+++++. |..|+|||+|..+.+.-+.-+.++ .-+.|+|.-. ++++.+.+.+.+.|..+...
T Consensus 222 DfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsN 300 (1118)
T KOG1275|consen 222 DFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSN 300 (1118)
T ss_pred eeeccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCC
Confidence 58888999998876 557899999998776666555444 4467788543 44444455778888433222
Q ss_pred -CceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEE
Q 002519 834 -GECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWN 872 (913)
Q Consensus 834 -~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd 872 (913)
...+..+......+..+++++++..++.+..+|.|.+|.
T Consensus 301 P~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 301 PPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred CccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 234445555566799999999999999999999999997
No 323
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=98.39 E-value=0.00041 Score=80.04 Aligned_cols=239 Identities=15% Similarity=0.130 Sum_probs=135.9
Q ss_pred EEEEEEecCCCEEEEE-eCCC----cEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCC-----------eE
Q 002519 636 VICCHFSSDGKLLATG-GHDK----KAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDK-----------TV 699 (913)
Q Consensus 636 V~~l~fspdg~~Lasg-s~Dg----~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg-----------~V 699 (913)
+..+++||||++||.+ +..| .|+|+|+++++.+...-... ....+.|.+|++.|+....|. .|
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~-~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v 204 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP-KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV 204 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE-ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc-ccceEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence 4467899999998875 3333 59999999997765331111 122399999998877765433 37
Q ss_pred EEEEcCCCCce-eEEeccCCCC--eEEEEEcCCCCeEEEEEeCC---CcEEEEEcCCC-----eeeEEeeC--CceEEEE
Q 002519 700 RVWDADNPGYS-LRTFMGHSAS--VMSLDFHPNKDDLICSCDGD---GEIRYWSINNG-----SCTRVFKG--GTAQMRF 766 (913)
Q Consensus 700 ~Iwdl~~~~~~-~~~~~~h~~~--V~sl~fsp~~~~ll~sgs~D---g~I~iwdl~~~-----~~~~~~~~--~~~~v~~ 766 (913)
++|++.++... ...+...... ...+..+++++.+++..... ..|++.|+..+ ........ ......-
T Consensus 205 ~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~ 284 (414)
T PF02897_consen 205 YRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVD 284 (414)
T ss_dssp EEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEE
T ss_pred EEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEE
Confidence 88888774332 3344433332 56788999999888766544 45888888874 23333322 2222222
Q ss_pred ecCCCEEEEEEc----CCeEEEEECCCCe---EEEEecCCCCC--eEEEEEcCCCC-EEEEEeCC---eEEEEECCCCCC
Q 002519 767 QPHLGRYLAAAA----ENVVSILDAETQA---CRLSLQGHTKP--IDSVCWDPSGE-LLASVSED---SVRVWTVGSGSE 833 (913)
Q Consensus 767 s~~~~~ll~~~~----dg~I~i~D~~t~~---~~~~l~~h~~~--V~sl~~spdg~-~l~s~s~d---~I~vwdl~~~~~ 833 (913)
.. ++.++..+. .+.|...++.... ....+..+... +..+.. .+. +++....+ .|++|++..+
T Consensus 285 ~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~--~~~~Lvl~~~~~~~~~l~v~~~~~~-- 359 (414)
T PF02897_consen 285 HH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSL--FKDYLVLSYRENGSSRLRVYDLDDG-- 359 (414)
T ss_dssp EE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEE--ETTEEEEEEEETTEEEEEEEETT-T--
T ss_pred cc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEE--ECCEEEEEEEECCccEEEEEECCCC--
Confidence 22 554544443 3577778887764 23344445553 444444 344 44444444 7999999722
Q ss_pred CceEEEeec-CCCceEEEEEeCCCCEEEEEEcC----CeEEEEECCCCcEEEE
Q 002519 834 GECVHELSC-NGNKFHSCVFHPTYPSLLVIGCY----QSLELWNMSENKTMTL 881 (913)
Q Consensus 834 ~~~i~~~~~-~~~~i~~l~~sp~g~~l~s~s~d----g~I~iwd~~~~~~~~~ 881 (913)
.....+.. ..+.|..+...++.+.+...-.. .+|+.||+.+++...+
T Consensus 360 -~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~~ 411 (414)
T PF02897_consen 360 -KESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELTLL 411 (414)
T ss_dssp -EEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEEEE
T ss_pred -cEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEEEE
Confidence 22222222 23345555555665554443332 4899999999887644
No 324
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.35 E-value=2.9e-07 Score=103.28 Aligned_cols=241 Identities=13% Similarity=0.147 Sum_probs=150.8
Q ss_pred CCCCEEEEEEecCC--CEEEEEeCCCcEEEEECCCCc--eeeEeccCCCCeEEEEECCC-CCEEEEEe----CCCeEEEE
Q 002519 632 STSKVICCHFSSDG--KLLATGGHDKKAVLWHTDTLK--SKTNLEEHSSLITDVRFSPS-MPRLATSS----FDKTVRVW 702 (913)
Q Consensus 632 H~~~V~~l~fspdg--~~Lasgs~Dg~V~vwd~~~~~--~~~~l~~h~~~V~~l~fspd-g~~Lasgs----~Dg~V~Iw 702 (913)
.+..+.|++++-+. .++++|..+|.|.+-.+.... ......+|...+++++|++- .+.||.|- .|..+.||
T Consensus 55 dtqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iw 134 (783)
T KOG1008|consen 55 DTQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIW 134 (783)
T ss_pred cCCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccce
Confidence 34567888876543 588999999999998876322 24456678889999999985 44666663 25679999
Q ss_pred EcCCCC----ceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCC-eeeEEeeC-CceEEEEecCCCEEEEE
Q 002519 703 DADNPG----YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG-SCTRVFKG-GTAQMRFQPHLGRYLAA 776 (913)
Q Consensus 703 dl~~~~----~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~-~~~~~~~~-~~~~v~~s~~~~~ll~~ 776 (913)
|+.+.- .......+......++||..+.+ ++.+|.....|.++|++-. .....+.. -+..+.+.|....+++.
T Consensus 135 di~s~ltvPke~~~fs~~~l~gqns~cwlrd~k-lvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs 213 (783)
T KOG1008|consen 135 DINSLLTVPKESPLFSSSTLDGQNSVCWLRDTK-LVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCS 213 (783)
T ss_pred ecccccCCCccccccccccccCccccccccCcc-hhhcccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceec
Confidence 998731 11111112445566899986644 6668888899999999832 22222222 34456778866677777
Q ss_pred EcCCeEEEEE-CCCCe-EEEEecCCC----CCeEEEEEcCCCC-EEEEEeCC--eEEEEECCCCCC------CceEEE--
Q 002519 777 AAENVVSILD-AETQA-CRLSLQGHT----KPIDSVCWDPSGE-LLASVSED--SVRVWTVGSGSE------GECVHE-- 839 (913)
Q Consensus 777 ~~dg~I~i~D-~~t~~-~~~~l~~h~----~~V~sl~~spdg~-~l~s~s~d--~I~vwdl~~~~~------~~~i~~-- 839 (913)
..|+.|.+|| .++-+ ++..+...+ +.+..++|+|... .+++...| +|++||+..-.. ...+..
T Consensus 214 ~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~v~t~~s~nn~~~~~~~s 293 (783)
T KOG1008|consen 214 NSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICVVGTEGSANNSVFVNYES 293 (783)
T ss_pred cccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccccCCcccccccceeeecc
Confidence 8899999999 33332 222222222 2489999999665 77777777 899999854211 111111
Q ss_pred ---eecCC--CceEEEEEeCCC--CEEEEEEcCCeEEEEEC
Q 002519 840 ---LSCNG--NKFHSCVFHPTY--PSLLVIGCYQSLELWNM 873 (913)
Q Consensus 840 ---~~~~~--~~i~~l~~sp~g--~~l~s~s~dg~I~iwd~ 873 (913)
+...+ ..|.+..||+.. ...+++...-.+..|++
T Consensus 294 ~~~~q~~~~~s~I~~f~wH~~s~~er~il~~~nl~~~Df~V 334 (783)
T KOG1008|consen 294 KYPVQPNSQCSGIDFFTWHTASPTERQILGVINLQPKDFSV 334 (783)
T ss_pred cccccccccccceeecCcCcCCccceeEEeeccCChhhccc
Confidence 11122 456777777755 33444444444444444
No 325
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.34 E-value=0.00013 Score=77.84 Aligned_cols=192 Identities=14% Similarity=0.166 Sum_probs=136.1
Q ss_pred CCeEEEEEcCCCCeEEEEEeCCCc-EEEEEcCCCeeeEEeeCCc-----eEEEEecCCCEEEEEEc-----CCeEEEEEC
Q 002519 719 ASVMSLDFHPNKDDLICSCDGDGE-IRYWSINNGSCTRVFKGGT-----AQMRFQPHLGRYLAAAA-----ENVVSILDA 787 (913)
Q Consensus 719 ~~V~sl~fsp~~~~ll~sgs~Dg~-I~iwdl~~~~~~~~~~~~~-----~~v~~s~~~~~ll~~~~-----dg~I~i~D~ 787 (913)
.....++.+|.....++.+-.-|+ ..+||..+++....+.... ..-+|++++.+++++-. .|.|-|||.
T Consensus 5 ~RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~ 84 (305)
T PF07433_consen 5 ARGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDA 84 (305)
T ss_pred ccccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEEC
Confidence 345568889977778877777665 6789999998887765432 23679999999998765 479999999
Q ss_pred C-CCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-------------------eEEEEECCCCCCCceEEE--e--ecC
Q 002519 788 E-TQACRLSLQGHTKPIDSVCWDPSGELLASVSED-------------------SVRVWTVGSGSEGECVHE--L--SCN 843 (913)
Q Consensus 788 ~-t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-------------------~I~vwdl~~~~~~~~i~~--~--~~~ 843 (913)
. +.+.+.++..|.-.-..+.+.|||+.|+++..+ ++.+.|..++ ..+.. + ..|
T Consensus 85 ~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG---~ll~q~~Lp~~~~ 161 (305)
T PF07433_consen 85 ARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSG---ALLEQVELPPDLH 161 (305)
T ss_pred cCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCC---ceeeeeecCcccc
Confidence 9 668888888887777888999999877766422 3445555555 33333 3 336
Q ss_pred CCceEEEEEeCCCCEEEEEEcCC-------eEEEEECCCCcE-EE-----EcccCCCeEEEEEeCCCCEEEEEe-CCCcE
Q 002519 844 GNKFHSCVFHPTYPSLLVIGCYQ-------SLELWNMSENKT-MT-----LTAHEGLIAALAVSTETGYVASAS-HDKFV 909 (913)
Q Consensus 844 ~~~i~~l~~sp~g~~l~s~s~dg-------~I~iwd~~~~~~-~~-----~~~h~~~V~~l~~spdg~~Lasgs-~DG~I 909 (913)
...|..+++..+|..++..-..+ .|.+++....-. +. ...-.+.|-+|+++.++.+|++.+ .-+++
T Consensus 162 ~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~ 241 (305)
T PF07433_consen 162 QLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRV 241 (305)
T ss_pred ccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEE
Confidence 67899999999988666654443 455555444211 11 123457899999999998775544 67889
Q ss_pred EEeC
Q 002519 910 KLWK 913 (913)
Q Consensus 910 ~IWd 913 (913)
.+||
T Consensus 242 ~~~d 245 (305)
T PF07433_consen 242 AVWD 245 (305)
T ss_pred EEEE
Confidence 9995
No 326
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.34 E-value=8.7e-06 Score=93.67 Aligned_cols=109 Identities=16% Similarity=0.230 Sum_probs=84.3
Q ss_pred EEEEEecCCCEEEEEe----CCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCceeE
Q 002519 637 ICCHFSSDGKLLATGG----HDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLR 712 (913)
Q Consensus 637 ~~l~fspdg~~Lasgs----~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~ 712 (913)
+-+.|+|...+||+++ ..|.|.||- ++|++-+.... .-.+++++|+|..-.|+.|=.-|.+.+|...+ .+...
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~-P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~-~e~ht 95 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTY-PVHATSLCWHPEEFVLAQGWEMGVSDVQKTNT-TETHT 95 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCccccc-ceehhhhccChHHHHHhhccccceeEEEecCC-ceeee
Confidence 3456889888888876 457888884 55654433321 12256799999988899998899999999886 44455
Q ss_pred EeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcC
Q 002519 713 TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN 749 (913)
Q Consensus 713 ~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~ 749 (913)
....|..+|..+.|+++|..++ ++..-|.|.+|...
T Consensus 96 v~~th~a~i~~l~wS~~G~~l~-t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 96 VVETHPAPIQGLDWSHDGTVLM-TLDNPGSVHLWRYD 131 (1416)
T ss_pred eccCCCCCceeEEecCCCCeEE-EcCCCceeEEEEee
Confidence 5667999999999999988665 99999999999876
No 327
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.33 E-value=1.7e-06 Score=63.28 Aligned_cols=38 Identities=29% Similarity=0.543 Sum_probs=36.4
Q ss_pred eeeeEeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEE
Q 002519 624 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWH 661 (913)
Q Consensus 624 ~~~~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd 661 (913)
+.+..+++|.+.|++|+|+|++.+|++|+.|++|+|||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 57889999999999999999999999999999999997
No 328
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.33 E-value=0.00068 Score=73.33 Aligned_cols=255 Identities=11% Similarity=0.121 Sum_probs=155.3
Q ss_pred CcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeC----------CCeEEEEEcCCCCceeEEec-cC--C---
Q 002519 655 KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF----------DKTVRVWDADNPGYSLRTFM-GH--S--- 718 (913)
Q Consensus 655 g~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~----------Dg~V~Iwdl~~~~~~~~~~~-~h--~--- 718 (913)
+.|+|+|.++++.+-.+.. +..-.+..+||++.+++++. .-.|.+||..+ -.....+. .. .
T Consensus 17 ~rv~viD~d~~k~lGmi~~--g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~T-L~~~~EI~iP~k~R~~~ 93 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDT--GFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQT-LSPTGEIEIPPKPRAQV 93 (342)
T ss_dssp EEEEEEETTTTEEEEEEEE--ESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTT-TEEEEEEEETTS-B--B
T ss_pred ceEEEEECCCCcEEEEeec--ccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCc-CcccceEecCCcchhee
Confidence 4799999999988877764 23344678999998887642 34689999987 33222221 11 1
Q ss_pred -CCeEEEEEcCCCCeEEEE-EeCCCcEEEEEcCCCeeeEEeeCCceEEEEecCCCEEEEEEcCCeEEEEECC-CCeEEEE
Q 002519 719 -ASVMSLDFHPNKDDLICS-CDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAE-TQACRLS 795 (913)
Q Consensus 719 -~~V~sl~fsp~~~~ll~s-gs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~s~~~~~ll~~~~dg~I~i~D~~-t~~~~~~ 795 (913)
.....+.++.|++++++. .+---.|.|.|+..++.+..+..+-....+-.....|.+.|.||.+..+.+. .|+...+
T Consensus 94 ~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~ 173 (342)
T PF06433_consen 94 VPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQK 173 (342)
T ss_dssp S--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEE
T ss_pred cccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEEEEecCCCceEEEecCCceEEEEECCCCCEeEe
Confidence 122336778888776643 2334678899999999988887665555544444678899999998888777 3444322
Q ss_pred e----cCCCCC-eEEEEEcCCCC-EEEEEeCCeEEEEECCCCCCCceEEEeecC----------CCceEEEEEeCCCCEE
Q 002519 796 L----QGHTKP-IDSVCWDPSGE-LLASVSEDSVRVWTVGSGSEGECVHELSCN----------GNKFHSCVFHPTYPSL 859 (913)
Q Consensus 796 l----~~h~~~-V~sl~~spdg~-~l~s~s~d~I~vwdl~~~~~~~~i~~~~~~----------~~~i~~l~~sp~g~~l 859 (913)
. ....++ +..-++...+. +++..-.+.|+-.|+.... ......+... .+..--+++++....|
T Consensus 174 ~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~-~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rl 252 (342)
T PF06433_consen 174 STKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDS-AKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRL 252 (342)
T ss_dssp EEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSS-EEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEE
T ss_pred eccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCc-ccccCcccccCccccccCcCCcceeeeeeccccCeE
Confidence 1 111222 22334554444 4444444477777775432 2222222211 1123346788776666
Q ss_pred EEEEcCC----------eEEEEECCCCcEEEEcccCCCeEEEEEeCCCC-EEEEEe-CCCcEEEeC
Q 002519 860 LVIGCYQ----------SLELWNMSENKTMTLTAHEGLIAALAVSTETG-YVASAS-HDKFVKLWK 913 (913)
Q Consensus 860 ~s~s~dg----------~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~-~Lasgs-~DG~I~IWd 913 (913)
++.-..+ .|.+||+.+++.+....-+..+.+|.++.+.+ +|++.+ .++.|.|||
T Consensus 253 yvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D 318 (342)
T PF06433_consen 253 YVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYD 318 (342)
T ss_dssp EEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEE
T ss_pred EEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEe
Confidence 6653321 68889999999986555556788999998877 665544 578999986
No 329
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.32 E-value=0.00015 Score=84.58 Aligned_cols=191 Identities=13% Similarity=0.157 Sum_probs=131.9
Q ss_pred CEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCC-eEEEEECCCCCEEEEEeCCC-----eEEEEEcCCC-
Q 002519 635 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSL-ITDVRFSPSMPRLATSSFDK-----TVRVWDADNP- 707 (913)
Q Consensus 635 ~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~-V~~l~fspdg~~Lasgs~Dg-----~V~Iwdl~~~- 707 (913)
.|.| |++.+..+|.|+.+|.|.+++- ..+.+..+..+... |..+....+..+|++.+.|+ .|+|||++.-
T Consensus 27 ~isc--~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~ 103 (933)
T KOG2114|consen 27 AISC--CSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVD 103 (933)
T ss_pred ceeE--EcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccC
Confidence 4544 5688889999999999988873 34555777777777 55554444446888888765 4899999742
Q ss_pred ----Ccee---EEec----cCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCC----Ce---eeEEeeCCceEEEEecC
Q 002519 708 ----GYSL---RTFM----GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN----GS---CTRVFKGGTAQMRFQPH 769 (913)
Q Consensus 708 ----~~~~---~~~~----~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~----~~---~~~~~~~~~~~v~~s~~ 769 (913)
..++ +.+. ....++.+++.+.+- ..+|+|-.+|.|.++.-+- +. ....-+.+++.+.+..+
T Consensus 104 ~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l-~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d 182 (933)
T KOG2114|consen 104 KNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDL-KTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSD 182 (933)
T ss_pred CCCCcceeeeeeeeccCCCCCCCcceEEEEEccc-cEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecC
Confidence 1222 2222 135678888888874 4666888999999885321 11 11122456788888888
Q ss_pred CCEEEEEEcCCeEEEEECCCCeE-EEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECC
Q 002519 770 LGRYLAAAAENVVSILDAETQAC-RLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVG 829 (913)
Q Consensus 770 ~~~ll~~~~dg~I~i~D~~t~~~-~~~l~~h~~~V~sl~~spdg~~l~s~s~d~I~vwdl~ 829 (913)
+..++.+.....|.+|.+....+ ...+..|...++|..|++...-|++++...|.+||..
T Consensus 183 ~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e~l~fY~sd 243 (933)
T KOG2114|consen 183 GKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSEFLYFYDSD 243 (933)
T ss_pred CceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecCceEEEEcCC
Confidence 87766666677888888874443 4447778888999999876665777777789999985
No 330
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.28 E-value=0.00011 Score=85.72 Aligned_cols=203 Identities=14% Similarity=0.252 Sum_probs=136.4
Q ss_pred EECCCCCEEEEEeCCCeEEEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCC-----cEEEEEcCCC-----
Q 002519 682 RFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDG-----EIRYWSINNG----- 751 (913)
Q Consensus 682 ~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg-----~I~iwdl~~~----- 751 (913)
+|++.+..+|.|+.||.|.+.+-. -..++.|..+...|...-|.-++..++++.+.|+ .|+|||++..
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~s--~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s 107 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNSS--FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS 107 (933)
T ss_pred EEcCCCceEEEeeccccEEEeccc--ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence 366788899999999988777643 3445777777777444555556656666666654 5899998753
Q ss_pred -eee---EEee-------CCceEEEEecCCCEEEEEEcCCeEEEEECCC----CeEEEEecCCCCCeEEEEEcCCCCE-E
Q 002519 752 -SCT---RVFK-------GGTAQMRFQPHLGRYLAAAAENVVSILDAET----QACRLSLQGHTKPIDSVCWDPSGEL-L 815 (913)
Q Consensus 752 -~~~---~~~~-------~~~~~v~~s~~~~~ll~~~~dg~I~i~D~~t----~~~~~~l~~h~~~V~sl~~spdg~~-l 815 (913)
.|+ +.+. .....++++.+...+++|-.+|.|.++..+- +....-......+|+.+++..++.. +
T Consensus 108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~l 187 (933)
T KOG2114|consen 108 PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVL 187 (933)
T ss_pred cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeE
Confidence 233 2222 1345678888888899999999999984321 1111112224678999999999985 5
Q ss_pred EEEeCCeEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCc-EEEEc-ccCCCeE
Q 002519 816 ASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK-TMTLT-AHEGLIA 889 (913)
Q Consensus 816 ~s~s~d~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~-~~~~~-~h~~~V~ 889 (913)
+++....|.+|.+... . .....+..++..+.|..+++....|++++ +..|.+|+..... +..+. +|.....
T Consensus 188 Fv~Tt~~V~~y~l~gr-~-p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~cfaf~~g~kk~~~ 260 (933)
T KOG2114|consen 188 FVATTEQVMLYSLSGR-T-PSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPCFAFEVGEKKEML 260 (933)
T ss_pred EEEecceeEEEEecCC-C-cceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCcceeeeecCCCeEEEE
Confidence 6666668999999732 2 44556777888889888887666455444 4579999987544 33555 5554443
No 331
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.28 E-value=2e-06 Score=62.98 Aligned_cols=39 Identities=41% Similarity=0.557 Sum_probs=36.9
Q ss_pred CceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEE
Q 002519 665 LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 703 (913)
Q Consensus 665 ~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwd 703 (913)
++++.++.+|...|++|+|+|++.+|++++.|+.|+|||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 367889999999999999999999999999999999997
No 332
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.26 E-value=2.9e-06 Score=88.93 Aligned_cols=159 Identities=12% Similarity=0.143 Sum_probs=118.2
Q ss_pred EEEeCCCcEEEEEcCCCeeeEE-eeCCceEEEEecCCCEEEEEEcCCeEEEEECCCC-----eEEEEecCCCCCeEEEEE
Q 002519 735 CSCDGDGEIRYWSINNGSCTRV-FKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQ-----ACRLSLQGHTKPIDSVCW 808 (913)
Q Consensus 735 ~sgs~Dg~I~iwdl~~~~~~~~-~~~~~~~v~~s~~~~~ll~~~~dg~I~i~D~~t~-----~~~~~l~~h~~~V~sl~~ 808 (913)
++.+.+-.|-+-|++++..... -+..+....|.-.++.++.|+..|.|..+|++.. .+...+. |...|+++..
T Consensus 228 fs~G~sqqv~L~nvetg~~qsf~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~Ssvtslq~ 306 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQSFQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDSSVTSLQI 306 (425)
T ss_pred ecccccceeEEEEeecccccccccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE-cCcchhhhhh
Confidence 4666788899999988753322 2345556678888899999999999999999875 3333333 8899999988
Q ss_pred cC-CCCEEEEEeCC-eEEEEECCCCCCCceEEEeecCCCceEE--EEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEcc-
Q 002519 809 DP-SGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHS--CVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTA- 883 (913)
Q Consensus 809 sp-dg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~--l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~- 883 (913)
.. ++.+|.+.+.+ +|++||++.-+..+.+..+.+|-+.... +.+++....|++++.|...+||.++.+.++....
T Consensus 307 Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf 386 (425)
T KOG2695|consen 307 LQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPF 386 (425)
T ss_pred hccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccCC
Confidence 77 67788888777 9999999877555558888887665443 3456677889999999999999999999884332
Q ss_pred ----cCCCeEEEEEe
Q 002519 884 ----HEGLIAALAVS 894 (913)
Q Consensus 884 ----h~~~V~~l~~s 894 (913)
.+..+.+++|.
T Consensus 387 ~~s~~e~d~~sv~~~ 401 (425)
T KOG2695|consen 387 PYSASEVDIPSVAFD 401 (425)
T ss_pred CCccccccccceehh
Confidence 23345566664
No 333
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.26 E-value=0.0011 Score=75.36 Aligned_cols=90 Identities=12% Similarity=0.100 Sum_probs=70.9
Q ss_pred eEEEEECCCCCCCceEEEee-cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEE
Q 002519 822 SVRVWTVGSGSEGECVHELS-CNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYV 900 (913)
Q Consensus 822 ~I~vwdl~~~~~~~~i~~~~-~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~L 900 (913)
..++|++... +..++.... .....+.+|+++|+...++.|+.||.|.+||...+.... ....-.++.++|+|+|.+|
T Consensus 237 d~ciYE~~r~-klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~-~ka~~~P~~iaWHp~gai~ 314 (545)
T PF11768_consen 237 DSCIYECSRN-KLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLL-AKAEFIPTLIAWHPDGAIF 314 (545)
T ss_pred EEEEEEeecC-ceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeee-eeecccceEEEEcCCCcEE
Confidence 3567777543 233333222 346789999999999999999999999999998775443 3455678899999999999
Q ss_pred EEEeCCCcEEEeC
Q 002519 901 ASASHDKFVKLWK 913 (913)
Q Consensus 901 asgs~DG~I~IWd 913 (913)
++|+.-|.|.+||
T Consensus 315 ~V~s~qGelQ~FD 327 (545)
T PF11768_consen 315 VVGSEQGELQCFD 327 (545)
T ss_pred EEEcCCceEEEEE
Confidence 9999999999997
No 334
>PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions. The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B.
Probab=98.25 E-value=1.1e-06 Score=58.27 Aligned_cols=27 Identities=41% Similarity=0.602 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHhcC
Q 002519 10 KMLDVYIHDYLVKRDLKASAQAFQAEG 36 (913)
Q Consensus 10 ~~l~~yiydyl~~~~~~~~a~a~~~e~ 36 (913)
+.||.+|||||+++|+.++|++|.+|+
T Consensus 1 ~~Ln~lI~~YL~~~Gy~~tA~~f~~Ea 27 (27)
T PF08513_consen 1 EELNQLIYDYLVENGYKETAKAFAKEA 27 (27)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHCCcHHHHHHHHhcC
Confidence 579999999999999999999999885
No 335
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.21 E-value=0.00038 Score=80.88 Aligned_cols=182 Identities=8% Similarity=-0.043 Sum_probs=114.7
Q ss_pred EcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEee--CCceEEEEecCCCEEEEEEcC----CeEEEEECCCCeEEEEecCC
Q 002519 726 FHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK--GGTAQMRFQPHLGRYLAAAAE----NVVSILDAETQACRLSLQGH 799 (913)
Q Consensus 726 fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~--~~~~~v~~s~~~~~ll~~~~d----g~I~i~D~~t~~~~~~l~~h 799 (913)
+.+||+.+..+.-..+.+.+.|.++.+....+. +....+.++++++++++++.+ ..+...+..+...+..+...
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~ 279 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIA 279 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchH
Confidence 344555444444445677778888766655543 234457889999998888632 34555554443333322211
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCeEEEEECCCC--CCCceEEEeecCCCceEEEEEeCCCCEEEEEEc-CCeEEEEECCCC
Q 002519 800 TKPIDSVCWDPSGELLASVSEDSVRVWTVGSG--SEGECVHELSCNGNKFHSCVFHPTYPSLLVIGC-YQSLELWNMSEN 876 (913)
Q Consensus 800 ~~~V~sl~~spdg~~l~s~s~d~I~vwdl~~~--~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~-dg~I~iwd~~~~ 876 (913)
.+ -.+.++|++... ..+.|.++|.++. .....+..+. -....+.|.++|||+++++++. +.+|.|+|+...
T Consensus 280 --~i--ea~vkdGK~~~V-~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~ 353 (635)
T PRK02888 280 --RI--EEAVKAGKFKTI-GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKL 353 (635)
T ss_pred --HH--HHhhhCCCEEEE-CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhh
Confidence 01 134557886665 3348999999861 0113333333 3667889999999999888876 679999999875
Q ss_pred cE------------EEEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 002519 877 KT------------MTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 913 (913)
Q Consensus 877 ~~------------~~~~~h~~~V~~l~~spdg~~Lasgs~DG~I~IWd 913 (913)
+. ..-..-...-...+|+.+|....|---|..|..||
T Consensus 354 k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn 402 (635)
T PRK02888 354 DDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWN 402 (635)
T ss_pred hhhhhccCCccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEe
Confidence 53 11112233445678899998888888899999996
No 336
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.21 E-value=0.0016 Score=74.11 Aligned_cols=252 Identities=15% Similarity=0.132 Sum_probs=166.0
Q ss_pred EEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeC-CCeEEEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEE
Q 002519 657 AVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF-DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLIC 735 (913)
Q Consensus 657 V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~-Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~ 735 (913)
+.+++..+......+..+. ....+.+.+++..++.... ...+.+.+... .............-.++.+++.+..+++
T Consensus 13 ~~v~~~~~~~~~~~~~~~~-~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~-n~~~~~~~~g~~~p~~i~v~~~~~~vyv 90 (381)
T COG3391 13 VSVINTGTNKVTAAISLGR-GPGGVAVNPDGTQVYVANSGSNDVSVIDATS-NTVTQSLSVGGVYPAGVAVNPAGNKVYV 90 (381)
T ss_pred eEEEeecccEEEEEeecCC-CCceeEEcCccCEEEEEeecCceeeeccccc-ceeeeeccCCCccccceeeCCCCCeEEE
Confidence 5566655555444444333 5667788888865544432 23455544442 2211111111134456888999888888
Q ss_pred EEeCCCcEEEEEcCCCeeeEEeeC--CceEEEEecCCCEEEEEEc---CCeEEEEECCCCeEEEEecCCCCCeEEEEEcC
Q 002519 736 SCDGDGEIRYWSINNGSCTRVFKG--GTAQMRFQPHLGRYLAAAA---ENVVSILDAETQACRLSLQGHTKPIDSVCWDP 810 (913)
Q Consensus 736 sgs~Dg~I~iwdl~~~~~~~~~~~--~~~~v~~s~~~~~ll~~~~---dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~sp 810 (913)
+...++.|.+.|..+.++...... ....+.+.++++.++++.. ++.+.+.|..+.+.+.+...-..+ ..++++|
T Consensus 91 ~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p 169 (381)
T COG3391 91 TTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDP 169 (381)
T ss_pred ecCCCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECC
Confidence 888889999999888877766543 4567899999988888776 689999999999888876544445 8899999
Q ss_pred CCCEEEEEeCC--eEEEEECCCCCCCc-eEEEeecCCCceEEEEEeCCCCEEEEEEcC---CeEEEEECCCCcEEEEc-c
Q 002519 811 SGELLASVSED--SVRVWTVGSGSEGE-CVHELSCNGNKFHSCVFHPTYPSLLVIGCY---QSLELWNMSENKTMTLT-A 883 (913)
Q Consensus 811 dg~~l~s~s~d--~I~vwdl~~~~~~~-~i~~~~~~~~~i~~l~~sp~g~~l~s~s~d---g~I~iwd~~~~~~~~~~-~ 883 (913)
+|..++.+..+ .|.++|........ .......-...-..+.+.+++.++++.... +.+.+.|..++...... .
T Consensus 170 ~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~ 249 (381)
T COG3391 170 DGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLP 249 (381)
T ss_pred CCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccc
Confidence 99977776633 99999975542111 000011123344678899999977776655 48999999998877442 2
Q ss_pred cCC-CeEEEEEeCCCCEEEEEeCC-CcEEE
Q 002519 884 HEG-LIAALAVSTETGYVASASHD-KFVKL 911 (913)
Q Consensus 884 h~~-~V~~l~~spdg~~Lasgs~D-G~I~I 911 (913)
-.. ....+.++|+|+++.+.... +.|.+
T Consensus 250 ~~~~~~~~v~~~p~g~~~yv~~~~~~~V~v 279 (381)
T COG3391 250 VGSGAPRGVAVDPAGKAAYVANSQGGTVSV 279 (381)
T ss_pred cccCCCCceeECCCCCEEEEEecCCCeEEE
Confidence 222 56778889999988777433 44444
No 337
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.21 E-value=0.00016 Score=82.60 Aligned_cols=190 Identities=13% Similarity=0.242 Sum_probs=123.4
Q ss_pred CceeEEeccCCCCeEEEEEcCCCCeEEEEEeCC---CcEEEEEcCCCeeeEE--eeCCceEEEEecCCCEEEEEEc-CC-
Q 002519 708 GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD---GEIRYWSINNGSCTRV--FKGGTAQMRFQPHLGRYLAAAA-EN- 780 (913)
Q Consensus 708 ~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~D---g~I~iwdl~~~~~~~~--~~~~~~~v~~s~~~~~ll~~~~-dg- 780 (913)
+.....+......+..-+|+|++..+.+..-.. ..|+++|+++++.... +.+......|+|++.+++.+.. |+
T Consensus 182 g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~ 261 (425)
T COG0823 182 GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGS 261 (425)
T ss_pred CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCC
Confidence 444555555566777789999988876554333 3499999998865444 4566677889999988887765 44
Q ss_pred -eEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC----eEEEEECCCCCCCceEEEeecCCCceEEEEEeCC
Q 002519 781 -VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPT 855 (913)
Q Consensus 781 -~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d----~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~ 855 (913)
.|+++|+.++.... +....+.-+.-.|+|||++|+..++. .|.++++..... ..+......-..-.|+|+
T Consensus 262 ~~iy~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~----~riT~~~~~~~~p~~Spd 336 (425)
T COG0823 262 PDIYLMDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV----TRLTFSGGGNSNPVWSPD 336 (425)
T ss_pred ccEEEEcCCCCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce----eEeeccCCCCcCccCCCC
Confidence 67788988876333 44333444467899999988777665 466666654422 223322333337789999
Q ss_pred CCEEEEEEcC-C--eEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEE
Q 002519 856 YPSLLVIGCY-Q--SLELWNMSENKTMTLTAHEGLIAALAVSTETGYVAS 902 (913)
Q Consensus 856 g~~l~s~s~d-g--~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~Las 902 (913)
|++|+..+.. | .|.++|+.++..+....+......-+|.++++.|..
T Consensus 337 G~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~~~e~ps~~~ng~~i~~ 386 (425)
T COG0823 337 GDKIVFESSSGGQWDIDKNDLASGGKIRILTSTYLNESPSWAPNGRMIMF 386 (425)
T ss_pred CCEEEEEeccCCceeeEEeccCCCCcEEEccccccCCCCCcCCCCceEEE
Confidence 9999988854 3 477777776664433333333444455555554443
No 338
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.19 E-value=0.0009 Score=70.55 Aligned_cols=198 Identities=14% Similarity=0.191 Sum_probs=115.4
Q ss_pred eeEeecCCCCEEEEEEecCCC-EEEEEeCCCcEEEEECCCCceeeEeccC-CCCeEEEEECCCCCEEEEEeCCCeEEEEE
Q 002519 626 ANSVRASTSKVICCHFSSDGK-LLATGGHDKKAVLWHTDTLKSKTNLEEH-SSLITDVRFSPSMPRLATSSFDKTVRVWD 703 (913)
Q Consensus 626 ~~~l~~H~~~V~~l~fspdg~-~Lasgs~Dg~V~vwd~~~~~~~~~l~~h-~~~V~~l~fspdg~~Lasgs~Dg~V~Iwd 703 (913)
.+.+.+-.+.|..|+|+|+.. ++|+....+.|..++. +|+.++.+.-. .+..-.|++..++.++++.-.++.+.+++
T Consensus 14 ~~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~ 92 (248)
T PF06977_consen 14 AKPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFT 92 (248)
T ss_dssp EEE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEE
T ss_pred eeECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEE
Confidence 455666677799999999755 6666667788888886 47777776543 35688999988887777666689999999
Q ss_pred cCCCCce-----eEEec-----cCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCC---CeeeEE-----------eeC
Q 002519 704 ADNPGYS-----LRTFM-----GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN---GSCTRV-----------FKG 759 (913)
Q Consensus 704 l~~~~~~-----~~~~~-----~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~---~~~~~~-----------~~~ 759 (913)
+...... +..+. .++..+..|+|.+.++.++++ -+..-..||.+.. ...+.. +..
T Consensus 93 ~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~-kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (248)
T PF06977_consen 93 IDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVA-KERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVR 171 (248)
T ss_dssp E----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEE-EESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS
T ss_pred EeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEE-eCCCChhhEEEccccCccceeeccccccccccceec
Confidence 9542221 11111 355668999999998888855 4455566666653 211111 112
Q ss_pred CceEEEEecCCCEEEEEEc-CCeEEEEECCCCeEEEEecCCC---------CCeEEEEEcCCCCEEEEEeCCeEEEE
Q 002519 760 GTAQMRFQPHLGRYLAAAA-ENVVSILDAETQACRLSLQGHT---------KPIDSVCWDPSGELLASVSEDSVRVW 826 (913)
Q Consensus 760 ~~~~v~~s~~~~~ll~~~~-dg~I~i~D~~t~~~~~~l~~h~---------~~V~sl~~spdg~~l~s~s~d~I~vw 826 (913)
....+.++|..+.+++-+. ...|.++| .+++.+..+.-.. ..-..|+|+++|++.++.-.+.+++|
T Consensus 172 d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsEpNlfy~f 247 (248)
T PF06977_consen 172 DLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSEPNLFYRF 247 (248)
T ss_dssp ---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEETTTEEEEE
T ss_pred cccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcCCceEEEe
Confidence 4567889999888777666 56888888 6666555443221 24678999999987766654455444
No 339
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.18 E-value=7.2e-05 Score=86.74 Aligned_cols=138 Identities=13% Similarity=0.175 Sum_probs=100.6
Q ss_pred cCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCC-----CCEEEEEeCCCeEEEEEcCCCC-ceeEEecc
Q 002519 643 SDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPS-----MPRLATSSFDKTVRVWDADNPG-YSLRTFMG 716 (913)
Q Consensus 643 pdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspd-----g~~Lasgs~Dg~V~Iwdl~~~~-~~~~~~~~ 716 (913)
.+|.++++|+.||+|.|..+.+.+....+. ...++.+|+++|+ .+.+++|+.-| +.++.-.=-+ +....+..
T Consensus 81 ~~Gey~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~ 158 (846)
T KOG2066|consen 81 LEGEYVASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSE 158 (846)
T ss_pred cCCceEEEecCCCcEEEeeccCCccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeec
Confidence 359999999999999999999888777665 4467999999998 56899999888 7777543211 11224556
Q ss_pred CCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeCCc---------eEEEEecCCCEEEEEEcCCeEEEEEC
Q 002519 717 HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGT---------AQMRFQPHLGRYLAAAAENVVSILDA 787 (913)
Q Consensus 717 h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~---------~~v~~s~~~~~ll~~~~dg~I~i~D~ 787 (913)
..+.|.+|+|.. ++|+-++ |-.|++||+.++..+..++... ..+.|.++. .++.+...+|+|..+
T Consensus 159 ~eG~I~~i~W~g---~lIAWan-d~Gv~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~--~LVIGW~d~v~i~~I 232 (846)
T KOG2066|consen 159 GEGPIHSIKWRG---NLIAWAN-DDGVKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDED--RLVIGWGDSVKICSI 232 (846)
T ss_pred CccceEEEEecC---cEEEEec-CCCcEEEeccccceeeccCCCCCCCCcccCCCceEecCCC--eEEEecCCeEEEEEE
Confidence 778999999983 3775665 5569999999988777664322 235566553 344566677888877
Q ss_pred C
Q 002519 788 E 788 (913)
Q Consensus 788 ~ 788 (913)
+
T Consensus 233 ~ 233 (846)
T KOG2066|consen 233 K 233 (846)
T ss_pred e
Confidence 6
No 340
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.18 E-value=0.00025 Score=85.86 Aligned_cols=226 Identities=13% Similarity=0.173 Sum_probs=132.5
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeee
Q 002519 675 SSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT 754 (913)
Q Consensus 675 ~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~ 754 (913)
...|.++.|.-+..-|+.+..+|.|.+-|..+. .+.....-...|.+++|+||...+. ..+.+.+|.+-+ .+...+
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~--~~eivg~vd~GI~aaswS~Dee~l~-liT~~~tll~mT-~~f~~i 143 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETL--ELEIVGNVDNGISAASWSPDEELLA-LITGRQTLLFMT-KDFEPI 143 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEccccc--ceeeeeeccCceEEEeecCCCcEEE-EEeCCcEEEEEe-ccccch
Confidence 468999999999999999999999999988762 2333444567899999999977544 555556665433 212111
Q ss_pred EEeeCCceEEEEecCCCEEEEEEcCC----------eEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEE-----e
Q 002519 755 RVFKGGTAQMRFQPHLGRYLAAAAEN----------VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASV-----S 819 (913)
Q Consensus 755 ~~~~~~~~~v~~s~~~~~ll~~~~dg----------~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~-----s 819 (913)
....-.. .-.+ .+.++.++... .....+....+.......-.+.-++|+|--||.++++. .
T Consensus 144 ~E~~L~~---d~~~-~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~ 219 (1265)
T KOG1920|consen 144 AEKPLDA---DDER-KSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESET 219 (1265)
T ss_pred hcccccc---cccc-ccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccC
Confidence 1110000 0000 01122222211 11111111110000000111223578999999999884 3
Q ss_pred C-CeEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEEEEc---CCeEEEEECCCCcEE----EEcccCCCeEEE
Q 002519 820 E-DSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGC---YQSLELWNMSENKTM----TLTAHEGLIAAL 891 (913)
Q Consensus 820 ~-d~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~---dg~I~iwd~~~~~~~----~~~~h~~~V~~l 891 (913)
. ..|+|||.. + ..-..-....+.-.+++|-|.|..+++... |+.|.+|.-+..+.- .+......|..+
T Consensus 220 ~~RkirV~drE-g---~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L 295 (1265)
T KOG1920|consen 220 GTRKIRVYDRE-G---ALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEEL 295 (1265)
T ss_pred CceeEEEeccc-c---hhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchhee
Confidence 3 289999976 2 111111122344568899999998888754 457999986654322 233344459999
Q ss_pred EEeCCCCEEEE---EeCCCcEEEe
Q 002519 892 AVSTETGYVAS---ASHDKFVKLW 912 (913)
Q Consensus 892 ~~spdg~~Las---gs~DG~I~IW 912 (913)
+|+.++.+||+ +.....|++|
T Consensus 296 ~Wns~sdiLAv~~~~~e~~~v~lw 319 (1265)
T KOG1920|consen 296 AWNSNSDILAVVTSNLENSLVQLW 319 (1265)
T ss_pred eecCCCCceeeeecccccceEEEE
Confidence 99999999887 4444559998
No 341
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.16 E-value=0.00022 Score=81.47 Aligned_cols=194 Identities=18% Similarity=0.234 Sum_probs=125.6
Q ss_pred CceeeEeccCCCCeEEEEECCCCCEEEEEeC---C-CeEEEEEcCCCCce-eEEeccCCCCeEEEEEcCCCCeEEEEEeC
Q 002519 665 LKSKTNLEEHSSLITDVRFSPSMPRLATSSF---D-KTVRVWDADNPGYS-LRTFMGHSASVMSLDFHPNKDDLICSCDG 739 (913)
Q Consensus 665 ~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~---D-g~V~Iwdl~~~~~~-~~~~~~h~~~V~sl~fsp~~~~ll~sgs~ 739 (913)
+.....+..-...+..-+|++++..++..+. . ..|.++|++++... +..+.++.. ...|+|||+.++++...
T Consensus 182 g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~---~P~fspDG~~l~f~~~r 258 (425)
T COG0823 182 GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNG---APAFSPDGSKLAFSSSR 258 (425)
T ss_pred CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccC---CccCCCCCCEEEEEECC
Confidence 4555556556667888899999987765533 2 35899999874432 333344433 47899999999999888
Q ss_pred CCc--EEEEEcCCCeeeEEe--eCCceEEEEecCCCEEEEEEcC-C--eEEEEECCCCeEEEEecCCCCCeEEEEEcCCC
Q 002519 740 DGE--IRYWSINNGSCTRVF--KGGTAQMRFQPHLGRYLAAAAE-N--VVSILDAETQACRLSLQGHTKPIDSVCWDPSG 812 (913)
Q Consensus 740 Dg~--I~iwdl~~~~~~~~~--~~~~~~v~~s~~~~~ll~~~~d-g--~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg 812 (913)
||. |+++|+..+...+.. .+....-.|+|+|.+++.++.. | .|.++|.+......... ....-..-.|+|||
T Consensus 259 dg~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~-~~~~~~~p~~SpdG 337 (425)
T COG0823 259 DGSPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTF-SGGGNSNPVWSPDG 337 (425)
T ss_pred CCCccEEEEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeec-cCCCCcCccCCCCC
Confidence 876 556677666533311 2233456799999998888763 3 67788888775533222 22222277899999
Q ss_pred CEEEEEeC--C--eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEEEEcCC
Q 002519 813 ELLASVSE--D--SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ 866 (913)
Q Consensus 813 ~~l~s~s~--d--~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg 866 (913)
++|+..+. + .|.+.|+.++.. +..+ ........-.|.++++.++..+..+
T Consensus 338 ~~i~~~~~~~g~~~i~~~~~~~~~~---~~~l-t~~~~~e~ps~~~ng~~i~~~s~~~ 391 (425)
T COG0823 338 DKIVFESSSGGQWDIDKNDLASGGK---IRIL-TSTYLNESPSWAPNGRMIMFSSGQG 391 (425)
T ss_pred CEEEEEeccCCceeeEEeccCCCCc---EEEc-cccccCCCCCcCCCCceEEEeccCC
Confidence 98888773 2 477777766643 2221 1233344556788888777666544
No 342
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.14 E-value=0.0011 Score=77.99 Aligned_cols=242 Identities=13% Similarity=0.142 Sum_probs=136.5
Q ss_pred CEEEEEeCCCcEEEEECCCCceeeEeccCCCC-----eE-EEEECCCCCEEEEEe---------CCCeEEEEEcCCCCce
Q 002519 646 KLLATGGHDKKAVLWHTDTLKSKTNLEEHSSL-----IT-DVRFSPSMPRLATSS---------FDKTVRVWDADNPGYS 710 (913)
Q Consensus 646 ~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~-----V~-~l~fspdg~~Lasgs---------~Dg~V~Iwdl~~~~~~ 710 (913)
..++.++.++.|+-+|.++++.+-.+...... |. ...+. +.+++.++ .+|.|..+|..+ ++.
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~T-G~~ 187 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVET-GKL 187 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCC-Cce
Confidence 57778888999999999999988777644321 11 11222 23455553 367889999988 444
Q ss_pred eEEeccC-CC-------------------Ce-EEEEEcCCCCeEEEEEeCCC------------------cEEEEEcCCC
Q 002519 711 LRTFMGH-SA-------------------SV-MSLDFHPNKDDLICSCDGDG------------------EIRYWSINNG 751 (913)
Q Consensus 711 ~~~~~~h-~~-------------------~V-~sl~fsp~~~~ll~sgs~Dg------------------~I~iwdl~~~ 751 (913)
+-.+... .. .| ....+.+.++.+ +.++.++ .|..+|++++
T Consensus 188 ~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V-~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG 266 (488)
T cd00216 188 LWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLV-YVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTG 266 (488)
T ss_pred eeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEE-EEECCCCCCCccCCccCCCCCCceeeEEEEcCCCC
Confidence 4433321 10 01 123333334434 4555454 7999999999
Q ss_pred eeeEEeeCCce---------EEEEe----cCCC---EEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEE
Q 002519 752 SCTRVFKGGTA---------QMRFQ----PHLG---RYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELL 815 (913)
Q Consensus 752 ~~~~~~~~~~~---------~v~~s----~~~~---~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l 815 (913)
+.+..+..... ...+. .++. .+++++.+|.+..+|.++++.+...... ...++.+| +.++
T Consensus 267 ~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~---~~~~~~~~-~~vy 342 (488)
T cd00216 267 KVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV---EQPMAYDP-GLVY 342 (488)
T ss_pred CEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee---ccccccCC-ceEE
Confidence 99887653211 01111 1222 4667778999999999999988876421 11223333 2222
Q ss_pred EEE-----------------eCC-eEEEEECCCCCCCceEEEeecCC--------CceEEEEEeCCCCEEEEEEcCCeEE
Q 002519 816 ASV-----------------SED-SVRVWTVGSGSEGECVHELSCNG--------NKFHSCVFHPTYPSLLVIGCYQSLE 869 (913)
Q Consensus 816 ~s~-----------------s~d-~I~vwdl~~~~~~~~i~~~~~~~--------~~i~~l~~sp~g~~l~s~s~dg~I~ 869 (913)
+.. ..+ .|.-+|+.+++ .+....... .........-.+..|++++.||.|+
T Consensus 343 v~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~---~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ 419 (488)
T cd00216 343 LGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGK---VVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFR 419 (488)
T ss_pred EccccccccCcccccCCCCCCCceEEEEEeCCCCc---EeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEE
Confidence 211 112 67777777663 333222210 1111111122556789999999999
Q ss_pred EEECCCCcEEEEcccCCCeEE--EEEeCCCC
Q 002519 870 LWNMSENKTMTLTAHEGLIAA--LAVSTETG 898 (913)
Q Consensus 870 iwd~~~~~~~~~~~h~~~V~~--l~~spdg~ 898 (913)
.+|..+++++......+.+.+ +.+..+++
T Consensus 420 ald~~tG~~lW~~~~~~~~~a~P~~~~~~g~ 450 (488)
T cd00216 420 AFDATTGKELWKFRTPSGIQATPMTYEVNGK 450 (488)
T ss_pred EEECCCCceeeEEECCCCceEcCEEEEeCCE
Confidence 999999998833333344332 23344554
No 343
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.13 E-value=0.00057 Score=78.35 Aligned_cols=222 Identities=12% Similarity=0.138 Sum_probs=119.5
Q ss_pred eecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEE-EcCCC
Q 002519 629 VRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVW-DADNP 707 (913)
Q Consensus 629 l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iw-dl~~~ 707 (913)
+....-....+.++|+|++++++ .||...||.....+.... +.....+|... ..+|+-...++|.|+ ++++
T Consensus 28 lg~~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~k~~-----G~g~~~vw~~~-n~yAv~~~~~~I~I~kn~~~- 99 (443)
T PF04053_consen 28 LGSCEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRNKAF-----GSGLSFVWSSR-NRYAVLESSSTIKIYKNFKN- 99 (443)
T ss_dssp EEE-SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTEEEEE-----EE-SEEEE-TS-SEEEEE-TTS-EEEEETTEE-
T ss_pred CCCCCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCccccc-----CceeEEEEecC-ccEEEEECCCeEEEEEcCcc-
Confidence 33445568899999999999995 588888888555444332 23456789884 457777778889996 4432
Q ss_pred CceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeCC-ceEEEEecCCCEEEEEEcCCeEEEEE
Q 002519 708 GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG-TAQMRFQPHLGRYLAAAAENVVSILD 786 (913)
Q Consensus 708 ~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~-~~~v~~s~~~~~ll~~~~dg~I~i~D 786 (913)
...+.+.. ...+..|-. |. +|+..+ ++.|.+||+.+++.++.+... +..+.|++++..++..+.+ .+.|++
T Consensus 100 -~~~k~i~~-~~~~~~If~---G~-LL~~~~-~~~i~~yDw~~~~~i~~i~v~~vk~V~Ws~~g~~val~t~~-~i~il~ 171 (443)
T PF04053_consen 100 -EVVKSIKL-PFSVEKIFG---GN-LLGVKS-SDFICFYDWETGKLIRRIDVSAVKYVIWSDDGELVALVTKD-SIYILK 171 (443)
T ss_dssp --TT------SS-EEEEE----SS-SEEEEE-TTEEEEE-TTT--EEEEESS-E-EEEEE-TTSSEEEEE-S--SEEEEE
T ss_pred -ccceEEcC-CcccceEEc---Cc-EEEEEC-CCCEEEEEhhHcceeeEEecCCCcEEEEECCCCEEEEEeCC-eEEEEE
Confidence 22222221 123444433 44 443444 458999999999999999877 4899999998877777654 566655
Q ss_pred CCCC-----------eEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCCceEEEeecCCCceEEEEEeCC
Q 002519 787 AETQ-----------ACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPT 855 (913)
Q Consensus 787 ~~t~-----------~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~ 855 (913)
.+.. .....+..-...|.+.+|..+ .|+-.+...|+. +..| +...+..+ ..++.-+.+.+.
T Consensus 172 ~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~~lkY--l~~G-e~~~i~~l---d~~~yllgy~~~ 243 (443)
T PF04053_consen 172 YNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSNHLKY--LVNG-ETGIIAHL---DKPLYLLGYLPK 243 (443)
T ss_dssp E-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TTEEEE--EETT-EEEEEEE----SS--EEEEEETT
T ss_pred ecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCCeEEE--EEcC-CcceEEEc---CCceEEEEEEcc
Confidence 4332 122222222467999999876 444444446666 3222 22233333 556777778887
Q ss_pred CCEEEEEEcCCeEEEEECC
Q 002519 856 YPSLLVIGCYQSLELWNMS 874 (913)
Q Consensus 856 g~~l~s~s~dg~I~iwd~~ 874 (913)
.+.+++...++.|..+.+.
T Consensus 244 ~~~ly~~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 244 ENRLYLIDRDGNVISYELD 262 (443)
T ss_dssp TTEEEEE-TT--EEEEE--
T ss_pred CCEEEEEECCCCEEEEEEC
Confidence 7788888888888877665
No 344
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.10 E-value=0.0027 Score=64.90 Aligned_cols=140 Identities=13% Similarity=0.059 Sum_probs=88.9
Q ss_pred CCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCceeEEeccCCCCeEE-
Q 002519 645 GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMS- 723 (913)
Q Consensus 645 g~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~s- 723 (913)
.++++.|+..+.+.-.|..+|+.+..-.- ...|.+-+.- -|+.++.|+..|.+++.+++++ ..+..+... +.|.+
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~il-g~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tG-s~~w~f~~~-~~vk~~ 98 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAIL-GVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTG-SQIWNFVIL-ETVKVR 98 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhh-CceeeeeeEE-ECCEEEEEEccCcEEEEEecch-hheeeeeeh-hhhccc
Confidence 45777788888888888888876654321 1222222221 3668999999999999999984 333333321 12222
Q ss_pred EEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeCCce---EEEEecCCCEEEEEEcCCeEEEEECCC
Q 002519 724 LDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTA---QMRFQPHLGRYLAAAAENVVSILDAET 789 (913)
Q Consensus 724 l~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~---~v~~s~~~~~ll~~~~dg~I~i~D~~t 789 (913)
....+++ .+|..|+.|++.+..|.++..++...+.+.. .-++.+..+.++++...|.|.-...+.
T Consensus 99 a~~d~~~-glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~ 166 (354)
T KOG4649|consen 99 AQCDFDG-GLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNP 166 (354)
T ss_pred eEEcCCC-ceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEEEEccCC
Confidence 2233444 4788999999999999999999888764322 234556556666666666555444443
No 345
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.10 E-value=0.0033 Score=68.15 Aligned_cols=237 Identities=14% Similarity=0.158 Sum_probs=142.7
Q ss_pred EEEEEecCCCEEEEEe----------CCCcEEEEECCCCceeeEeccCCC-------CeEEEEECCCCCEEEEEeC--CC
Q 002519 637 ICCHFSSDGKLLATGG----------HDKKAVLWHTDTLKSKTNLEEHSS-------LITDVRFSPSMPRLATSSF--DK 697 (913)
Q Consensus 637 ~~l~fspdg~~Lasgs----------~Dg~V~vwd~~~~~~~~~l~~h~~-------~V~~l~fspdg~~Lasgs~--Dg 697 (913)
-.+.++||++.+++++ ..-.|.+||..+......+.-..+ ....+.++.|+++++.... --
T Consensus 39 ~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~ 118 (342)
T PF06433_consen 39 GNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPAT 118 (342)
T ss_dssp EEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSE
T ss_pred CceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCC
Confidence 3466789999888754 344799999999887776543322 2234677888888877654 45
Q ss_pred eEEEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcC-CCeeeEEe----eCCc----eEEEEec
Q 002519 698 TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN-NGSCTRVF----KGGT----AQMRFQP 768 (913)
Q Consensus 698 ~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~-~~~~~~~~----~~~~----~~v~~s~ 768 (913)
.|.|.|+.. ++.+..+.. .++ ....|.++.-|.+-|.||.+....+. .|+..... .... ..-.+..
T Consensus 119 SVtVVDl~~-~kvv~ei~~-PGC---~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~ 193 (342)
T PF06433_consen 119 SVTVVDLAA-KKVVGEIDT-PGC---WLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSR 193 (342)
T ss_dssp EEEEEETTT-TEEEEEEEG-TSE---EEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEET
T ss_pred eEEEEECCC-CceeeeecC-CCE---EEEEecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceEC
Confidence 688889887 555554432 221 12223333345577779999998887 45443221 1111 1223445
Q ss_pred CCCEEEEEEcCCeEEEEECCCCeEEE--EecCC------C----CCeEEEEEcCCCCEEEEE-e-------CC---eEEE
Q 002519 769 HLGRYLAAAAENVVSILDAETQACRL--SLQGH------T----KPIDSVCWDPSGELLASV-S-------ED---SVRV 825 (913)
Q Consensus 769 ~~~~ll~~~~dg~I~i~D~~t~~~~~--~l~~h------~----~~V~sl~~spdg~~l~s~-s-------~d---~I~v 825 (913)
.++.++..+.+|.|+-.|+....... .+..- . +...-+++++....|++. . .+ .|.+
T Consensus 194 ~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv 273 (342)
T PF06433_consen 194 DGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWV 273 (342)
T ss_dssp TTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEE
T ss_pred CCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEE
Confidence 66778888999999999887764322 22111 1 123347787755544432 1 12 4777
Q ss_pred EECCCCCCCceEEEeecCCCceEEEEEeCCCC-EEEEEE-cCCeEEEEECCCCcEEEEc
Q 002519 826 WTVGSGSEGECVHELSCNGNKFHSCVFHPTYP-SLLVIG-CYQSLELWNMSENKTMTLT 882 (913)
Q Consensus 826 wdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~-~l~s~s-~dg~I~iwd~~~~~~~~~~ 882 (913)
||+.++ +.+..+.. ...+.++.++.+.+ +|++.+ .++.|.|||..+++.+...
T Consensus 274 ~D~~t~---krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~ 328 (342)
T PF06433_consen 274 YDLKTH---KRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSI 328 (342)
T ss_dssp EETTTT---EEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE
T ss_pred EECCCC---eEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeeh
Confidence 888776 55555554 34577888888765 555554 4689999999999988433
No 346
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.08 E-value=0.001 Score=75.56 Aligned_cols=219 Identities=15% Similarity=0.097 Sum_probs=149.2
Q ss_pred CCEEEEEEecCCCEE-EEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeC---CCeEEEEEcCCCCc
Q 002519 634 SKVICCHFSSDGKLL-ATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF---DKTVRVWDADNPGY 709 (913)
Q Consensus 634 ~~V~~l~fspdg~~L-asgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~---Dg~V~Iwdl~~~~~ 709 (913)
..-.+++++++++.+ ++...++.|.+.|..+.+....+..-. ....++|+++++.++.+.. +++|.+.|..+ ..
T Consensus 74 ~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t-~~ 151 (381)
T COG3391 74 VYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAAT-NK 151 (381)
T ss_pred ccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCC-Ce
Confidence 345578888888744 444456899999988776666654333 6778999999988877765 68888888887 44
Q ss_pred eeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeE-E------eeCCceEEEEecCCCEEEEEEcC---
Q 002519 710 SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR-V------FKGGTAQMRFQPHLGRYLAAAAE--- 779 (913)
Q Consensus 710 ~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~-~------~~~~~~~v~~s~~~~~ll~~~~d--- 779 (913)
.+.+...-..+ ..+++.|++..++++-..++.|.++|.......+ . .......+.+.+++.++++....
T Consensus 152 ~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~ 230 (381)
T COG3391 152 VTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGS 230 (381)
T ss_pred EEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCC
Confidence 44444333334 8899999999888777789999999988776663 1 11234568899999977776664
Q ss_pred CeEEEEECCCCeEEEEecCCCC-CeEEEEEcCCCCEEEEEeCC--eEEEEECCCCCCCceEEEeecCCCceEEEEEeCC
Q 002519 780 NVVSILDAETQACRLSLQGHTK-PIDSVCWDPSGELLASVSED--SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPT 855 (913)
Q Consensus 780 g~I~i~D~~t~~~~~~l~~h~~-~V~sl~~spdg~~l~s~s~d--~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~ 855 (913)
+.+...|..++........-.. ....+.++|+|+++.+.... .+.+.|..+......+.........+..+++.+.
T Consensus 231 ~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 309 (381)
T COG3391 231 NNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISPL 309 (381)
T ss_pred ceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccccccccceeccceee
Confidence 5999999999877665221112 45678999999987777444 8888888765332222222222233445555443
No 347
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.05 E-value=0.00099 Score=75.06 Aligned_cols=227 Identities=18% Similarity=0.199 Sum_probs=131.1
Q ss_pred CCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEe-ccC----------------CCCeEEEEECCCCCEEEEEeC
Q 002519 633 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNL-EEH----------------SSLITDVRFSPSMPRLATSSF 695 (913)
Q Consensus 633 ~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l-~~h----------------~~~V~~l~fspdg~~Lasgs~ 695 (913)
...+....|||||+.||... ++.|+++++.++...... .+. -+.-..+.|+||+++||....
T Consensus 42 ~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~ 120 (353)
T PF00930_consen 42 PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRF 120 (353)
T ss_dssp ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEE
T ss_pred ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEE
Confidence 67889999999999999886 678999998776433221 120 112356889999999987754
Q ss_pred C-Ce-----------------------------------EEEEEcCCCCce-eEEe---ccCCCCeEEEEEcCCCCeEEE
Q 002519 696 D-KT-----------------------------------VRVWDADNPGYS-LRTF---MGHSASVMSLDFHPNKDDLIC 735 (913)
Q Consensus 696 D-g~-----------------------------------V~Iwdl~~~~~~-~~~~---~~h~~~V~sl~fsp~~~~ll~ 735 (913)
| .. +.|+|+.++... +... ..-...+..+.|.+++..+++
T Consensus 121 d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~ 200 (353)
T PF00930_consen 121 DEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWV 200 (353)
T ss_dssp E-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEE
T ss_pred CCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEE
Confidence 3 11 333444432211 1111 123456778899988774443
Q ss_pred -EEeCC---CcEEEEEcCCCeeeEEeeC-------CceEEEEe-cCCCEEEEEE-cCC--eEEEEECCCCeEEEEecCCC
Q 002519 736 -SCDGD---GEIRYWSINNGSCTRVFKG-------GTAQMRFQ-PHLGRYLAAA-AEN--VVSILDAETQACRLSLQGHT 800 (913)
Q Consensus 736 -sgs~D---g~I~iwdl~~~~~~~~~~~-------~~~~v~~s-~~~~~ll~~~-~dg--~I~i~D~~t~~~~~~l~~h~ 800 (913)
....+ ..+.++|..++.+...+.. ......+. +++..++..+ .+| .|++++...+... .+....
T Consensus 201 ~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~-~lT~G~ 279 (353)
T PF00930_consen 201 QWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPR-QLTSGD 279 (353)
T ss_dssp EEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEE-ESS-SS
T ss_pred EEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEccccccee-ccccCc
Confidence 33333 3467778877665443321 12345554 6666555444 466 5667787777644 455445
Q ss_pred CCeEE-EEEcCCCCEEE-EEeCC-----eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEEEEc
Q 002519 801 KPIDS-VCWDPSGELLA-SVSED-----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGC 864 (913)
Q Consensus 801 ~~V~s-l~~spdg~~l~-s~s~d-----~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~ 864 (913)
-.|.. +.|+++++.|+ ++..+ .|...++..+ ..+..+.+.......+.|+|++++++..+.
T Consensus 280 ~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~---~~~~~LT~~~~~~~~~~~Spdg~y~v~~~s 347 (353)
T PF00930_consen 280 WEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSG---GEPKCLTCEDGDHYSASFSPDGKYYVDTYS 347 (353)
T ss_dssp S-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTET---TEEEESSTTSSTTEEEEE-TTSSEEEEEEE
T ss_pred eeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCC---CCeEeccCCCCCceEEEECCCCCEEEEEEc
Confidence 55644 67888877444 44432 4555566512 344445544444469999999998877654
No 348
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.99 E-value=0.0016 Score=68.59 Aligned_cols=197 Identities=16% Similarity=0.232 Sum_probs=110.3
Q ss_pred EeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEee----CCceEEEEecCCCEEEEEEcCCeEEEEECC
Q 002519 713 TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK----GGTAQMRFQPHLGRYLAAAAENVVSILDAE 788 (913)
Q Consensus 713 ~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~----~~~~~v~~s~~~~~ll~~~~dg~I~i~D~~ 788 (913)
.+.+-...+..|.|.|+.+.|+++....+.|..++.. ++.++.+. +....+++..++.++++.-.++.+.++++.
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~ 94 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID 94 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence 4445566799999999999999999999999999975 77777664 245668887655444443347889888873
Q ss_pred CC------eEEEEec-----CCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCC--CCCCceEEE------eecCCCceE
Q 002519 789 TQ------ACRLSLQ-----GHTKPIDSVCWDPSGELLASVSED-SVRVWTVGS--GSEGECVHE------LSCNGNKFH 848 (913)
Q Consensus 789 t~------~~~~~l~-----~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~--~~~~~~i~~------~~~~~~~i~ 848 (913)
.. ..+..+. .+...+..++|++.++.|+++-+. -..||.+.. ......+.. .......+.
T Consensus 95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S 174 (248)
T PF06977_consen 95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLS 174 (248)
T ss_dssp ---TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---
T ss_pred ccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecccc
Confidence 31 1111121 244568999999987766666655 556666653 111111111 112234578
Q ss_pred EEEEeCCCCEEEEEEc-CCeEEEEECCCCcEE---EEcc--c-----CCCeEEEEEeCCCCEEEEEeCCCcEEEe
Q 002519 849 SCVFHPTYPSLLVIGC-YQSLELWNMSENKTM---TLTA--H-----EGLIAALAVSTETGYVASASHDKFVKLW 912 (913)
Q Consensus 849 ~l~~sp~g~~l~s~s~-dg~I~iwd~~~~~~~---~~~~--h-----~~~V~~l~~spdg~~Lasgs~DG~I~IW 912 (913)
.+.++|....|++-+. ...|.++| ..|+.+ .+.. | -..--.|+|.++|++.+ .++-+..++|
T Consensus 175 ~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYI-vsEpNlfy~f 247 (248)
T PF06977_consen 175 GLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYI-VSEPNLFYRF 247 (248)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEE-EETTTEEEEE
T ss_pred ceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEE-EcCCceEEEe
Confidence 8999998766666555 46888889 555554 2322 1 12467899999996555 4566666665
No 349
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.97 E-value=0.0021 Score=72.73 Aligned_cols=258 Identities=13% Similarity=0.104 Sum_probs=134.4
Q ss_pred CEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCC---CC---
Q 002519 635 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN---PG--- 708 (913)
Q Consensus 635 ~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~---~~--- 708 (913)
.|+++.|+++..-||+|...|.|.||.+...+... ......-....|.+- ...++.-.|-|+.. ..
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~--~~~~~~~~~~~~~~~------~~~~~~~~l~di~~r~~~~~~~ 74 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYG--NREQPPDLDYNFRRF------SLNNSPGKLTDISDRAPPSLKE 74 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE--------------------S--------GGGSS-SEEE-GGG--TT-SE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCC--ccCCCcccCcccccc------cccCCCcceEEehhhCCccccc
Confidence 58999999999999999999999999876432221 000001111111110 00111223333332 11
Q ss_pred --ceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEee--C---------CceEEEEec-----CC
Q 002519 709 --YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK--G---------GTAQMRFQP-----HL 770 (913)
Q Consensus 709 --~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~--~---------~~~~v~~s~-----~~ 770 (913)
.+...+....+.|++++.+.-| +++.|..+|.+.|.|++....+..-. . .+.++.|.. ++
T Consensus 75 gf~P~~l~~~~~g~vtal~~S~iG--Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ 152 (395)
T PF08596_consen 75 GFLPLTLLDAKQGPVTALKNSDIG--FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDG 152 (395)
T ss_dssp EEEEEEEE---S-SEEEEEE-BTS--EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSS
T ss_pred ccCchhheeccCCcEeEEecCCCc--EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCc
Confidence 2334445567899999998554 88899999999999999887765521 1 233455541 22
Q ss_pred ---CEEEEEEcCCeEEEEECC--C-Ce----EEEEecCCCCCeEEEE-EcCC---------------------CCEEEEE
Q 002519 771 ---GRYLAAAAENVVSILDAE--T-QA----CRLSLQGHTKPIDSVC-WDPS---------------------GELLASV 818 (913)
Q Consensus 771 ---~~ll~~~~dg~I~i~D~~--t-~~----~~~~l~~h~~~V~sl~-~spd---------------------g~~l~s~ 818 (913)
-.+++|+..|.+.+|.+. . +. .......+.+.|..|+ |+.+ .-+++++
T Consensus 153 ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvv 232 (395)
T PF08596_consen 153 YSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVV 232 (395)
T ss_dssp SEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE
T ss_pred ccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEE
Confidence 367888889999999764 1 21 1122224556666665 3221 1267777
Q ss_pred eCCeEEEEECCCCCCCceEEEeecCCCceEEEEE-----eCCCCEEEEEEcCCeEEEEECCCCcEE-EEcc----cCCCe
Q 002519 819 SEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVF-----HPTYPSLLVIGCYQSLELWNMSENKTM-TLTA----HEGLI 888 (913)
Q Consensus 819 s~d~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~-----sp~g~~l~s~s~dg~I~iwd~~~~~~~-~~~~----h~~~V 888 (913)
++..++|+...+. +..+...........+++ ...+..|++...+|.|++|.+...+.+ .+.- ....+
T Consensus 233 Se~~irv~~~~~~---k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~ 309 (395)
T PF08596_consen 233 SESDIRVFKPPKS---KGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRL 309 (395)
T ss_dssp -SSEEEEE-TT------EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHH
T ss_pred cccceEEEeCCCC---cccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccc
Confidence 7779999998765 333333322223334445 235677888899999999999988877 2222 22245
Q ss_pred EEEEEeCCCCEEEEEeC
Q 002519 889 AALAVSTETGYVASASH 905 (913)
Q Consensus 889 ~~l~~spdg~~Lasgs~ 905 (913)
...+|+++|..++-.+.
T Consensus 310 ~~ssis~~Gdi~~~~gp 326 (395)
T PF08596_consen 310 SSSSISRNGDIFYWTGP 326 (395)
T ss_dssp TT-EE-TTS-EEEE-SS
T ss_pred cccEECCCCCEEEEeCc
Confidence 56677888887766554
No 350
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.95 E-value=0.0086 Score=70.88 Aligned_cols=184 Identities=11% Similarity=0.059 Sum_probs=112.2
Q ss_pred CCEEEEEeCCCcEEEEECCCCceeeEeccCC-CCeE---E-------EEECCCCCEEEEEeCCCeEEEEEcCCCCceeEE
Q 002519 645 GKLLATGGHDKKAVLWHTDTLKSKTNLEEHS-SLIT---D-------VRFSPSMPRLATSSFDKTVRVWDADNPGYSLRT 713 (913)
Q Consensus 645 g~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~-~~V~---~-------l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~ 713 (913)
+.+|++++.++.|+-+|..+++.+-.+.... ..+. + +++ .+..|+.++.|+.|...|.++ ++.+-.
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~T-Gk~~W~ 145 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKT-GKVVWS 145 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCC-CCEEee
Confidence 4477777788899999999999887765321 1111 1 122 234677888899999999988 554443
Q ss_pred ecc--CC--CCeEE-EEEcCCCCeEEEEEe-----CCCcEEEEEcCCCeeeEEeeCCc----------------------
Q 002519 714 FMG--HS--ASVMS-LDFHPNKDDLICSCD-----GDGEIRYWSINNGSCTRVFKGGT---------------------- 761 (913)
Q Consensus 714 ~~~--h~--~~V~s-l~fsp~~~~ll~sgs-----~Dg~I~iwdl~~~~~~~~~~~~~---------------------- 761 (913)
+.. +. ..+.+ -.+. ++.+++..+ .+|.|..+|.++++.+..+....
T Consensus 146 ~~~~~~~~~~~~tssP~v~--~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw 223 (527)
T TIGR03075 146 KKNGDYKAGYTITAAPLVV--KGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTW 223 (527)
T ss_pred cccccccccccccCCcEEE--CCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCC
Confidence 321 11 11111 1111 233443222 26899999999998876643210
Q ss_pred -------------eEEEEecCCCEEEEEEcC-----C-----------eEEEEECCCCeEEEEecCCCCCe---------
Q 002519 762 -------------AQMRFQPHLGRYLAAAAE-----N-----------VVSILDAETQACRLSLQGHTKPI--------- 803 (913)
Q Consensus 762 -------------~~v~~s~~~~~ll~~~~d-----g-----------~I~i~D~~t~~~~~~l~~h~~~V--------- 803 (913)
..+.+.+..+.++.+... + .|.-.|+++++.+..+......+
T Consensus 224 ~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p 303 (527)
T TIGR03075 224 PGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEM 303 (527)
T ss_pred CCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCc
Confidence 023566666777666521 1 67788999999988876522211
Q ss_pred EEEEEcCCCC---EEEEEeCC-eEEEEECCCCCC
Q 002519 804 DSVCWDPSGE---LLASVSED-SVRVWTVGSGSE 833 (913)
Q Consensus 804 ~sl~~spdg~---~l~s~s~d-~I~vwdl~~~~~ 833 (913)
.-+.+..+|+ .|+.+..+ .+.++|.++++.
T Consensus 304 ~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~ 337 (527)
T TIGR03075 304 ILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKL 337 (527)
T ss_pred EEEEeccCCcEEEEEEEeCCCceEEEEECCCCce
Confidence 1222334666 67777777 999999988743
No 351
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.89 E-value=0.0085 Score=64.85 Aligned_cols=222 Identities=16% Similarity=0.184 Sum_probs=124.0
Q ss_pred cCCCEEEEEeCCCcEEEEECC-CCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCceeEE--------
Q 002519 643 SDGKLLATGGHDKKAVLWHTD-TLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRT-------- 713 (913)
Q Consensus 643 pdg~~Lasgs~Dg~V~vwd~~-~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~-------- 713 (913)
..++.|+.|+.+| |+++++. ..+...... ...|..+...++-+.|++-+ |+.|+++++..-......
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~--~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~ 80 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILK--LSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKS 80 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEee--cceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccc
Confidence 4577999999888 9999983 333333332 22399999999888777766 599999999752211100
Q ss_pred -----eccCCCCeEEEE--EcCCCCeEEEEEeCCCcEEEEEcCCC-----eeeEEee--CCceEEEEecCCCEEEEEEcC
Q 002519 714 -----FMGHSASVMSLD--FHPNKDDLICSCDGDGEIRYWSINNG-----SCTRVFK--GGTAQMRFQPHLGRYLAAAAE 779 (913)
Q Consensus 714 -----~~~h~~~V~sl~--fsp~~~~ll~sgs~Dg~I~iwdl~~~-----~~~~~~~--~~~~~v~~s~~~~~ll~~~~d 779 (913)
.......+..++ -...+...++ +.....|.+|..... +..+.+. .....+.|. ++.++++. .
T Consensus 81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~-va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~v~~-~ 156 (275)
T PF00780_consen 81 RSLPTKLPETKGVSFFAVNGGHEGSRRLC-VAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKICVGT-S 156 (275)
T ss_pred ccccccccccCCeeEEeeccccccceEEE-EEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEEEEe-C
Confidence 111223344444 1123344443 344558888887653 3334443 455667777 45555554 5
Q ss_pred CeEEEEECCCCeEEEEecCC------------CCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCCceEEEeecCCCce
Q 002519 780 NVVSILDAETQACRLSLQGH------------TKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKF 847 (913)
Q Consensus 780 g~I~i~D~~t~~~~~~l~~h------------~~~V~sl~~spdg~~l~s~s~d~I~vwdl~~~~~~~~i~~~~~~~~~i 847 (913)
+...++|+.++.....+... ..++..+.. +++++|++ .++.-.+.|.. |.... ...+.- ....
T Consensus 157 ~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~-~~~~g~fv~~~-G~~~r-~~~i~W-~~~p 231 (275)
T PF00780_consen 157 KGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLC-YDNIGVFVNKN-GEPSR-KSTIQW-SSAP 231 (275)
T ss_pred CceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEE-ecceEEEEcCC-CCcCc-ccEEEc-CCch
Confidence 56888899876544333211 123333333 34556654 33333334442 32211 122222 2244
Q ss_pred EEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEE
Q 002519 848 HSCVFHPTYPSLLVIGCYQSLELWNMSENKTMT 880 (913)
Q Consensus 848 ~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~ 880 (913)
..+++ ...+|++.+. +.|.||++.+++++.
T Consensus 232 ~~~~~--~~pyli~~~~-~~iEV~~~~~~~lvQ 261 (275)
T PF00780_consen 232 QSVAY--SSPYLIAFSS-NSIEVRSLETGELVQ 261 (275)
T ss_pred hEEEE--ECCEEEEECC-CEEEEEECcCCcEEE
Confidence 45555 3346666555 569999999998773
No 352
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.87 E-value=0.00023 Score=82.35 Aligned_cols=70 Identities=21% Similarity=0.244 Sum_probs=64.9
Q ss_pred EEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcC
Q 002519 636 VICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDAD 705 (913)
Q Consensus 636 V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~ 705 (913)
+++++|+|..-.||.|-.-|.+.||...+.+.......|..+|..+.|+++|..|+++..-|.|.+|..+
T Consensus 62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred hhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 5669999999899999999999999999888888888999999999999999999999999999999887
No 353
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.86 E-value=0.0048 Score=66.79 Aligned_cols=214 Identities=14% Similarity=0.148 Sum_probs=121.6
Q ss_pred CCCCEEEEEeCCCeEEEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeE---------
Q 002519 685 PSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR--------- 755 (913)
Q Consensus 685 pdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~--------- 755 (913)
..++.|+.|+.+| |.++++.......+... ...|..|...++-+.+++-+ |+.|+++++..-....
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~--~~~I~ql~vl~~~~~llvLs--d~~l~~~~L~~l~~~~~~~~~~~~~ 79 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILK--LSSITQLSVLPELNLLLVLS--DGQLYVYDLDSLEPVSTSAPLAFPK 79 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEee--cceEEEEEEecccCEEEEEc--CCccEEEEchhhccccccccccccc
Confidence 3577999999999 99999943233333332 23399999998877666443 5999999987654333
Q ss_pred ------EeeCCceEEEEe----cCCCEEEEEEcCCeEEEEECCCC-----eEEEEecCCCCCeEEEEEcCCCCEEEEEeC
Q 002519 756 ------VFKGGTAQMRFQ----PHLGRYLAAAAENVVSILDAETQ-----ACRLSLQGHTKPIDSVCWDPSGELLASVSE 820 (913)
Q Consensus 756 ------~~~~~~~~v~~s----~~~~~ll~~~~dg~I~i~D~~t~-----~~~~~l~~h~~~V~sl~~spdg~~l~s~s~ 820 (913)
.+........|. ..+...+++.....|.+|..... +...++. -...+.+++|. ++.|+.+..
T Consensus 80 ~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~--~~~i~v~~~ 156 (275)
T PF00780_consen 80 SRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL--GNKICVGTS 156 (275)
T ss_pred cccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe--CCEEEEEeC
Confidence 111111222232 34456677777778888876553 3444444 34778899998 667888888
Q ss_pred CeEEEEECCCCCCCceEEEeecC----------CCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeE
Q 002519 821 DSVRVWTVGSGSEGECVHELSCN----------GNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIA 889 (913)
Q Consensus 821 d~I~vwdl~~~~~~~~i~~~~~~----------~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~-~~~~h~~~V~ 889 (913)
+...+.|+.++.. ..+...... ..++..+.. +++.+|++ . +..-.+.|....... ....-...+.
T Consensus 157 ~~f~~idl~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~-~-~~~g~fv~~~G~~~r~~~i~W~~~p~ 232 (275)
T PF00780_consen 157 KGFYLIDLNTGSP-SELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLC-Y-DNIGVFVNKNGEPSRKSTIQWSSAPQ 232 (275)
T ss_pred CceEEEecCCCCc-eEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEE-e-cceEEEEcCCCCcCcccEEEcCCchh
Confidence 8889999986533 222211111 112222233 34455543 2 333333444332221 1111223455
Q ss_pred EEEEeCCCCEEEEEeCCCcEEEeC
Q 002519 890 ALAVSTETGYVASASHDKFVKLWK 913 (913)
Q Consensus 890 ~l~~spdg~~Lasgs~DG~I~IWd 913 (913)
.+++.. .||+..+.+ .|.||+
T Consensus 233 ~~~~~~--pyli~~~~~-~iEV~~ 253 (275)
T PF00780_consen 233 SVAYSS--PYLIAFSSN-SIEVRS 253 (275)
T ss_pred EEEEEC--CEEEEECCC-EEEEEE
Confidence 555533 377766654 488874
No 354
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.85 E-value=0.016 Score=66.34 Aligned_cols=188 Identities=14% Similarity=0.155 Sum_probs=98.2
Q ss_pred cEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCc------eeEEeccCCCCeEEEEEcCC
Q 002519 656 KAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGY------SLRTFMGHSASVMSLDFHPN 729 (913)
Q Consensus 656 ~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~------~~~~~~~h~~~V~sl~fsp~ 729 (913)
.|.||+.. |+.+..+.-..+.|.++.|+.+ ..|++...||++++||+.. .. .+....-....|..+.+..+
T Consensus 62 ~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~-e~LvvV~~dG~v~vy~~~G-~~~fsl~~~i~~~~v~e~~i~~~~~~~~ 138 (410)
T PF04841_consen 62 SIQIYSSS-GKLLSSIPWDSGRIVGMGWTDD-EELVVVQSDGTVRVYDLFG-EFQFSLGEEIEEEKVLECRIFAIWFYKN 138 (410)
T ss_pred EEEEECCC-CCEeEEEEECCCCEEEEEECCC-CeEEEEEcCCEEEEEeCCC-ceeechhhhccccCcccccccccccCCC
Confidence 48888864 5666666655589999999875 4666777899999999963 22 01111111122222233323
Q ss_pred CCeEEEEEeCCCcEEEEEcCCCe-eeEEe---eCCce----------EEEEecCCCEEEEEEcCCeEEEEECCCCeEEEE
Q 002519 730 KDDLICSCDGDGEIRYWSINNGS-CTRVF---KGGTA----------QMRFQPHLGRYLAAAAENVVSILDAETQACRLS 795 (913)
Q Consensus 730 ~~~ll~sgs~Dg~I~iwdl~~~~-~~~~~---~~~~~----------~v~~s~~~~~ll~~~~dg~I~i~D~~t~~~~~~ 795 (913)
| +++. ..++.|.+.+-.... ..+.+ ..... ...+..+....+....++.+.+.+....+.
T Consensus 139 G--ivvL-t~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~--- 212 (410)
T PF04841_consen 139 G--IVVL-TGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ--- 212 (410)
T ss_pred C--EEEE-CCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---
Confidence 3 3322 234444443322211 11111 11000 012333334444444445555444332211
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEeecC-CCceEEEEEeCCC
Q 002519 796 LQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCN-GNKFHSCVFHPTY 856 (913)
Q Consensus 796 l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~-~~~i~~l~~sp~g 856 (913)
+. ..+++..+++||+|++||....+ .+.|.+..-. +++.++... ......+.|.-+.
T Consensus 213 i~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~---~~~~e~~~~~~~~p~~~~WCG~d 271 (410)
T PF04841_consen 213 ID-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFS---EKLCEFDTDSKSPPKQMAWCGND 271 (410)
T ss_pred cc-CCCCeEEEEECCCCCEEEEEECCCCEEEEECccc---ceeEEeecCcCCCCcEEEEECCC
Confidence 11 23679999999999999988887 7777765332 344444433 3345566665543
No 355
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.85 E-value=0.00029 Score=79.72 Aligned_cols=228 Identities=15% Similarity=0.142 Sum_probs=116.7
Q ss_pred cceeeeEeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEe--cc------CCCCeEEEEECC-----CC-
Q 002519 622 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNL--EE------HSSLITDVRFSP-----SM- 687 (913)
Q Consensus 622 ~~~~~~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l--~~------h~~~V~~l~fsp-----dg- 687 (913)
.|.....++...+.|++++.|.-| ++|.|..+|.+.|.|++....+..- .. ....|+++.|.- |+
T Consensus 75 gf~P~~l~~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~y 153 (395)
T PF08596_consen 75 GFLPLTLLDAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGY 153 (395)
T ss_dssp EEEEEEEE---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSS
T ss_pred ccCchhheeccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcc
Confidence 477888888889999999998555 9999999999999999876666542 22 345688888852 33
Q ss_pred --CEEEEEeCCCeEEEEEcCC-C-CceeEEec----cCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeC
Q 002519 688 --PRLATSSFDKTVRVWDADN-P-GYSLRTFM----GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG 759 (913)
Q Consensus 688 --~~Lasgs~Dg~V~Iwdl~~-~-~~~~~~~~----~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~ 759 (913)
-+|++|...|.+.+|.+.- . +.....+. .+.+.|.. |..+|..++........
T Consensus 154 SSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~-------------------I~~i~~~~G~~a~At~~ 214 (395)
T PF08596_consen 154 SSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILS-------------------IIPINADTGESALATIS 214 (395)
T ss_dssp EEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----E-------------------EEEEETTT--B-B-BHH
T ss_pred cceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEE-------------------EEEEECCCCCcccCchh
Confidence 3688888899999998752 1 11111110 12222222 22333333332111000
Q ss_pred CceEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEc-----CCCCEEEEEeCC-eEEEEECCCCCC
Q 002519 760 GTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWD-----PSGELLASVSED-SVRVWTVGSGSE 833 (913)
Q Consensus 760 ~~~~v~~s~~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~s-----pdg~~l~s~s~d-~I~vwdl~~~~~ 833 (913)
....+.-......+++.+.+..++++..-+.+..++..........+++. ..+..|++-..+ .|++|.+-.-
T Consensus 215 ~~~~l~~g~~i~g~vVvvSe~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~L-- 292 (395)
T PF08596_consen 215 AMQGLSKGISIPGYVVVVSESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSL-- 292 (395)
T ss_dssp HHHGGGGT----EEEEEE-SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT---
T ss_pred HhhccccCCCcCcEEEEEcccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCc--
Confidence 00000000011346677778999999998887776655332334445553 245567777777 9999999654
Q ss_pred CceEEEeecCC----CceEEEEEeCCCCEEEEEEcCC--eEEEEE
Q 002519 834 GECVHELSCNG----NKFHSCVFHPTYPSLLVIGCYQ--SLELWN 872 (913)
Q Consensus 834 ~~~i~~~~~~~----~~i~~l~~sp~g~~l~s~s~dg--~I~iwd 872 (913)
+.+..+.... ..+..++++++|..++..+... .+.+|.
T Consensus 293 -kei~~~~l~~~~d~~~~~~ssis~~Gdi~~~~gpsE~~l~sv~~ 336 (395)
T PF08596_consen 293 -KEIKSVSLPPPLDSRRLSSSSISRNGDIFYWTGPSEIQLFSVWG 336 (395)
T ss_dssp --EEEEEE-SS---HHHHTT-EE-TTS-EEEE-SSSEEEEEEEES
T ss_pred -hHhhcccCCCccccccccccEECCCCCEEEEeCcccEEEEEEEc
Confidence 4444444321 2345677888998766665443 344444
No 356
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=97.84 E-value=0.043 Score=57.51 Aligned_cols=271 Identities=11% Similarity=0.044 Sum_probs=150.9
Q ss_pred CCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccC--CCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCce
Q 002519 633 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEH--SSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYS 710 (913)
Q Consensus 633 ~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h--~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~ 710 (913)
.+.+.++.|+.+ ++..+..+.-++|+|+.+......+..- .+.-.++.. .|++...+..|.-+.+.|+.++..+
T Consensus 86 ~~l~~Dv~vse~--yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v--sGn~aYVadlddgfLivdvsdpssP 161 (370)
T COG5276 86 RDLFADVRVSEE--YVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV--SGNYAYVADLDDGFLIVDVSDPSSP 161 (370)
T ss_pred hhhhheeEeccc--EEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe--cCCEEEEeeccCcEEEEECCCCCCc
Confidence 456777777755 6777777888999999865544333221 133344444 5788888887666889999876655
Q ss_pred eE--EeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCe---eeEEeeCCceEEEEecCCCEEEEEEcCCeEEEE
Q 002519 711 LR--TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS---CTRVFKGGTAQMRFQPHLGRYLAAAAENVVSIL 785 (913)
Q Consensus 711 ~~--~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~---~~~~~~~~~~~v~~s~~~~~ll~~~~dg~I~i~ 785 (913)
.. .+.........++.+ |+ ..+.+..|+.+.|.|+.... .+.....+...-..++.+++.++...+..+.+.
T Consensus 162 ~lagrya~~~~d~~~v~IS--Gn-~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~egvliv 238 (370)
T COG5276 162 QLAGRYALPGGDTHDVAIS--GN-YAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYDEGVLIV 238 (370)
T ss_pred eeeeeeccCCCCceeEEEe--cC-eEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEcccceEEE
Confidence 43 233333344567776 33 34466779999999997653 333333332333344445566666667778888
Q ss_pred ECCCCeEEEEecC--CCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEEE
Q 002519 786 DAETQACRLSLQG--HTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVI 862 (913)
Q Consensus 786 D~~t~~~~~~l~~--h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~ 862 (913)
|..+.+....+.. ...++.--.|.-.+++......+ .+-+-|+.+.........+...+..-..+.. .+.++..+
T Consensus 239 d~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp~spfl~ss~~t~g~~a~gi~a--y~~y~yia 316 (370)
T COG5276 239 DVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISNPPSPFLSSSLDTAGYQAAGIRA--YGNYNYIA 316 (370)
T ss_pred ecCCCCCceEeeccccCCcccccceecccceeeeeccccCceeEeccCCCCCchhccccCCCccccceEE--ecCeeEec
Confidence 8877764443322 22222211333346666666666 6777777655433333333222222222222 22333333
Q ss_pred EcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 002519 863 GCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 913 (913)
Q Consensus 863 s~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~Lasgs~DG~I~IWd 913 (913)
..+ ...+.+....+.. ...+...-+.+++.+-+.+++.+...++-+.||+
T Consensus 317 dkn-~g~vV~~s~~s~m~~~~g~~ti~~s~~v~~~~q~~y~~d~~~gl~i~~ 367 (370)
T COG5276 317 DKN-TGAVVDASPPSMMDKRPGRPTIGQSCDVSVDTQIIYSTDYNGGLSIIE 367 (370)
T ss_pred cCC-ceEEEeCCChhhcccccCcceEeeecceEEEeeEEEEeecCCCEEEEE
Confidence 333 3444444433322 2222233344455555566788888899999985
No 357
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.84 E-value=0.0021 Score=71.46 Aligned_cols=207 Identities=14% Similarity=0.092 Sum_probs=115.3
Q ss_pred eEEEEEcCCCCceeEEec-cCCCCeEEEE---EcCC---CCeEEEEEeC----------CCcEEEEEcCCC-----eee-
Q 002519 698 TVRVWDADNPGYSLRTFM-GHSASVMSLD---FHPN---KDDLICSCDG----------DGEIRYWSINNG-----SCT- 754 (913)
Q Consensus 698 ~V~Iwdl~~~~~~~~~~~-~h~~~V~sl~---fsp~---~~~ll~sgs~----------Dg~I~iwdl~~~-----~~~- 754 (913)
.|+|.|..+ ...+..+. .....+++++ |..+ ...+|+.|.. .|.|.++++... +..
T Consensus 3 ~i~l~d~~~-~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 3 SIRLVDPTT-FEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp EEEEEETTT-SSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred EEEEEeCCC-CeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 477777766 33333332 2233344443 3322 1456665543 288999999984 222
Q ss_pred ---EEeeCCceEEEEecCCCEEEEEEcCCeEEEEECCCCe-EEEEecC-CCCCeEEEEEcCCCCEEEEEeCC-eEEEEEC
Q 002519 755 ---RVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQA-CRLSLQG-HTKPIDSVCWDPSGELLASVSED-SVRVWTV 828 (913)
Q Consensus 755 ---~~~~~~~~~v~~s~~~~~ll~~~~dg~I~i~D~~t~~-~~~~l~~-h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl 828 (913)
..+++.+.+++.. +++ ++++..+.|.+|++...+ .+..-.. ....+.++... +++|++|... .|.++.+
T Consensus 82 i~~~~~~g~V~ai~~~--~~~-lv~~~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~ 156 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF--NGR-LVVAVGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRY 156 (321)
T ss_dssp EEEEEESS-EEEEEEE--TTE-EEEEETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEE
T ss_pred EEEEeecCcceEhhhh--CCE-EEEeecCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEE
Confidence 2234555555544 566 555556899999988776 3332221 22356666555 5688888766 7777655
Q ss_pred CCCCC-CceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC-------C--cEE--EEcccCCCeEEE---EE
Q 002519 829 GSGSE-GECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSE-------N--KTM--TLTAHEGLIAAL---AV 893 (913)
Q Consensus 829 ~~~~~-~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~-------~--~~~--~~~~h~~~V~~l---~~ 893 (913)
+.... ...+. -......++++.|-.+++.++++..+|.|.++.... + +.. ........|+++ ++
T Consensus 157 ~~~~~~l~~va-~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l 235 (321)
T PF03178_consen 157 DEENNKLILVA-RDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSL 235 (321)
T ss_dssp ETTTE-EEEEE-EESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--S
T ss_pred EccCCEEEEEE-ecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEe
Confidence 43211 12222 222355688888886667999999999999997753 2 222 233345667777 44
Q ss_pred eCC--CC------EEEEEeCCCcEEE
Q 002519 894 STE--TG------YVASASHDKFVKL 911 (913)
Q Consensus 894 spd--g~------~Lasgs~DG~I~I 911 (913)
.+. +. .++.++.+|.|.+
T Consensus 236 ~~~~~~~~~~~~~~i~~~T~~G~Ig~ 261 (321)
T PF03178_consen 236 IPRSGSSESPNRPQILYGTVDGSIGV 261 (321)
T ss_dssp S--SSSS-TTEEEEEEEEETTS-EEE
T ss_pred eecCCCCcccccceEEEEecCCEEEE
Confidence 441 22 4778888998874
No 358
>PRK10115 protease 2; Provisional
Probab=97.81 E-value=0.038 Score=67.62 Aligned_cols=238 Identities=8% Similarity=0.000 Sum_probs=123.0
Q ss_pred CEEEEEEecCCCEEEEEeCC-----CcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCC------CeEEEEE
Q 002519 635 KVICCHFSSDGKLLATGGHD-----KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFD------KTVRVWD 703 (913)
Q Consensus 635 ~V~~l~fspdg~~Lasgs~D-----g~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D------g~V~Iwd 703 (913)
.+..+.|||||++||.+... ..|+|.|+.+++.+...-.... ..++|.+|++.|+.+..+ ..|++|+
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~ 205 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHT 205 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence 46678899999988876432 3688999988764332222222 469999999877665442 3688888
Q ss_pred cCCCC-ceeEEeccCCCCeE-EEEEcCCCCeEEEEEeC--CCcEEEEEcC--CCeeeEEeeC-CceEEEEecCCCEEEEE
Q 002519 704 ADNPG-YSLRTFMGHSASVM-SLDFHPNKDDLICSCDG--DGEIRYWSIN--NGSCTRVFKG-GTAQMRFQPHLGRYLAA 776 (913)
Q Consensus 704 l~~~~-~~~~~~~~h~~~V~-sl~fsp~~~~ll~sgs~--Dg~I~iwdl~--~~~~~~~~~~-~~~~v~~s~~~~~ll~~ 776 (913)
+.++. .....+........ .+..+.++..+++.+.. ++.+.+|+.. .+.....+.. ......+...++.+++.
T Consensus 206 lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~ 285 (686)
T PRK10115 206 IGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLDHYQHRFYLR 285 (686)
T ss_pred CCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEEeCCCEEEEE
Confidence 88742 22333433333333 33334477766644433 4678998853 3332222221 11112222333455444
Q ss_pred EcC----CeEEEEECCC-CeEEEEecCCC-CCeEEEEEcCCCCEEEEEeCC---eEEEEECCCCCCCceEEEee-cCCCc
Q 002519 777 AAE----NVVSILDAET-QACRLSLQGHT-KPIDSVCWDPSGELLASVSED---SVRVWTVGSGSEGECVHELS-CNGNK 846 (913)
Q Consensus 777 ~~d----g~I~i~D~~t-~~~~~~l~~h~-~~V~sl~~spdg~~l~s~s~d---~I~vwdl~~~~~~~~i~~~~-~~~~~ 846 (913)
+.. ..|...++.. ++....+.... ..|..+.+. .+.++++...+ .+.+++...+ .+..+. .....
T Consensus 286 tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~~~~~----~~~~l~~~~~~~ 360 (686)
T PRK10115 286 SNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQINRKTR----EVIGIAFDDPAY 360 (686)
T ss_pred EcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEcCCCC----ceEEecCCCCce
Confidence 432 2444445542 22222223223 367888887 33455555545 5566665422 222222 11222
Q ss_pred eEEEEEe--CCCC-EEEEEEcC---CeEEEEECCCCcEE
Q 002519 847 FHSCVFH--PTYP-SLLVIGCY---QSLELWNMSENKTM 879 (913)
Q Consensus 847 i~~l~~s--p~g~-~l~s~s~d---g~I~iwd~~~~~~~ 879 (913)
+..+.++ +++. .+++.++. +.|+.||+.+++..
T Consensus 361 ~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~~~ 399 (686)
T PRK10115 361 VTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGERR 399 (686)
T ss_pred EeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCcEE
Confidence 3333344 3444 33333332 58899998877644
No 359
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.77 E-value=0.00015 Score=82.23 Aligned_cols=74 Identities=22% Similarity=0.290 Sum_probs=64.4
Q ss_pred cCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCC
Q 002519 631 ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN 706 (913)
Q Consensus 631 ~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~ 706 (913)
.....|.|++++|+.+.|+.|+.||.|++||...+... +....-..+.++|+|+|..|++|+..|.+.+||+.-
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMAL 330 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence 57789999999999999999999999999998765333 334456688999999999999999999999999975
No 360
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.76 E-value=8.9e-06 Score=91.63 Aligned_cols=196 Identities=18% Similarity=0.234 Sum_probs=133.1
Q ss_pred CCeEEEEECCCC--CEEEEEeCCCeEEEEEcCCCCce-eEEeccCCCCeEEEEEcCCCCeEEEEEe----CCCcEEEEEc
Q 002519 676 SLITDVRFSPSM--PRLATSSFDKTVRVWDADNPGYS-LRTFMGHSASVMSLDFHPNKDDLICSCD----GDGEIRYWSI 748 (913)
Q Consensus 676 ~~V~~l~fspdg--~~Lasgs~Dg~V~Iwdl~~~~~~-~~~~~~h~~~V~sl~fsp~~~~ll~sgs----~Dg~I~iwdl 748 (913)
..+.|+++.-+. .++++|..+|.|.+-.++.+... .....++...+++++|.+-+..+|++|- .|..+.|||+
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi 136 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI 136 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence 446677765543 47888999999999988764433 4455678899999999987666776653 3678999999
Q ss_pred CCCe--ee--EEe----eCCceEEEEecCCCEEEEEEcCCeEEEEECCCCe-EEEEecCCCCCeEEEEEcC-CCCEEEEE
Q 002519 749 NNGS--CT--RVF----KGGTAQMRFQPHLGRYLAAAAENVVSILDAETQA-CRLSLQGHTKPIDSVCWDP-SGELLASV 818 (913)
Q Consensus 749 ~~~~--~~--~~~----~~~~~~v~~s~~~~~ll~~~~dg~I~i~D~~t~~-~~~~l~~h~~~V~sl~~sp-dg~~l~s~ 818 (913)
.++- .. ..| ..+...++|..+.+.+++|.....+.++|++... ....+ .+..|..+.++| .+.|+++.
T Consensus 137 ~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv--nTk~vqG~tVdp~~~nY~cs~ 214 (783)
T KOG1008|consen 137 NSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV--NTKYVQGITVDPFSPNYFCSN 214 (783)
T ss_pred ccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh--hhhhcccceecCCCCCceecc
Confidence 8872 11 112 2245678899777888888888899999998432 11111 345677888899 78899988
Q ss_pred eCCeEEEEE-CCCCCCCceEEEeecCC----CceEEEEEeCCCC-EEEEEEcC-CeEEEEECCC
Q 002519 819 SEDSVRVWT-VGSGSEGECVHELSCNG----NKFHSCVFHPTYP-SLLVIGCY-QSLELWNMSE 875 (913)
Q Consensus 819 s~d~I~vwd-l~~~~~~~~i~~~~~~~----~~i~~l~~sp~g~-~l~s~s~d-g~I~iwd~~~ 875 (913)
.++.|.+|| .++-+. .+..+.... ..+..++|+|... .+++...| ++|++||+..
T Consensus 215 ~dg~iAiwD~~rnien--pl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 215 SDGDIAIWDTYRNIEN--PLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred ccCceeeccchhhhcc--HHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 877999999 433221 111111112 2488899999654 34444444 6899999753
No 361
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.76 E-value=0.015 Score=67.16 Aligned_cols=217 Identities=13% Similarity=0.114 Sum_probs=121.2
Q ss_pred eEEEEECCCCCEEEEE-eCCC----eEEEEEcCCCCceeE-EeccCCCCeEEEEEcCCCCeEEEEEeCC----------C
Q 002519 678 ITDVRFSPSMPRLATS-SFDK----TVRVWDADNPGYSLR-TFMGHSASVMSLDFHPNKDDLICSCDGD----------G 741 (913)
Q Consensus 678 V~~l~fspdg~~Lasg-s~Dg----~V~Iwdl~~~~~~~~-~~~~h~~~V~sl~fsp~~~~ll~sgs~D----------g 741 (913)
+..++++||+++||.+ +..| .|+|+|+++ +..+. .+... ....+.|.+++..++++...+ .
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~t-g~~l~d~i~~~--~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~ 202 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLET-GKFLPDGIENP--KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPR 202 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTT-TEEEEEEEEEE--ESEEEEECTTSSEEEEEECSTTTSS-CCGCCE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCC-CcCcCCccccc--ccceEEEeCCCCEEEEEEeCcccccccCCCCc
Confidence 4467899999998766 3334 599999998 44333 22221 122399999988888776443 2
Q ss_pred cEEEEEcCCCeee--EEeeC--C---ceEEEEecCCCEEEEEEc---C-CeEEEEECCCC-----eEEEEecCCCCCeEE
Q 002519 742 EIRYWSINNGSCT--RVFKG--G---TAQMRFQPHLGRYLAAAA---E-NVVSILDAETQ-----ACRLSLQGHTKPIDS 805 (913)
Q Consensus 742 ~I~iwdl~~~~~~--~~~~~--~---~~~v~~s~~~~~ll~~~~---d-g~I~i~D~~t~-----~~~~~l~~h~~~V~s 805 (913)
.|++|.+.+.... ..|.. . ...+..+.++.++++... + ..|++.|+..+ ...............
T Consensus 203 ~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~ 282 (414)
T PF02897_consen 203 QVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYY 282 (414)
T ss_dssp EEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEE
T ss_pred EEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEE
Confidence 3788888776432 34432 2 335778889888776554 2 46888898874 333333323333333
Q ss_pred EEEcCCCCEEEEEeCC----eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEEEEcCC---eEEEEECC-CCc
Q 002519 806 VCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ---SLELWNMS-ENK 877 (913)
Q Consensus 806 l~~spdg~~l~s~s~d----~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg---~I~iwd~~-~~~ 877 (913)
+... .+.+++....+ .|...++...........+..+...+.-..+...+.+|++...++ .|++|++. +..
T Consensus 283 v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~ 361 (414)
T PF02897_consen 283 VDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGKE 361 (414)
T ss_dssp EEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TEE
T ss_pred EEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCCcE
Confidence 4443 44444444443 566667766543223334444454433344444555666655443 89999999 555
Q ss_pred EEEEcc-cCCCeEEEEEeCCCC
Q 002519 878 TMTLTA-HEGLIAALAVSTETG 898 (913)
Q Consensus 878 ~~~~~~-h~~~V~~l~~spdg~ 898 (913)
...+.. -.+.|..+...+++.
T Consensus 362 ~~~~~~p~~g~v~~~~~~~~~~ 383 (414)
T PF02897_consen 362 SREIPLPEAGSVSGVSGDFDSD 383 (414)
T ss_dssp EEEEESSSSSEEEEEES-TT-S
T ss_pred EeeecCCcceEEeccCCCCCCC
Confidence 443332 334455555555544
No 362
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.75 E-value=0.0047 Score=74.66 Aligned_cols=212 Identities=9% Similarity=0.114 Sum_probs=128.5
Q ss_pred CEEEEE-eCCCeEEEEEcCCCCceeEEeccCCCC-eEEEEEcC-----CCCeEEEEEeCCCcEEEEEcCCCe--eeE---
Q 002519 688 PRLATS-SFDKTVRVWDADNPGYSLRTFMGHSAS-VMSLDFHP-----NKDDLICSCDGDGEIRYWSINNGS--CTR--- 755 (913)
Q Consensus 688 ~~Lasg-s~Dg~V~Iwdl~~~~~~~~~~~~h~~~-V~sl~fsp-----~~~~ll~sgs~Dg~I~iwdl~~~~--~~~--- 755 (913)
+.|+.. .....|+-.|++. ++++..+..|... |..++-.. .....| .|-.+..|+.||.+-.. ++.
T Consensus 494 ~mil~~~~~~~~ly~mDLe~-GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tf-lGls~n~lfriDpR~~~~k~v~~~~ 571 (794)
T PF08553_consen 494 NMILLDPNNPNKLYKMDLER-GKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTF-LGLSDNSLFRIDPRLSGNKLVDSQS 571 (794)
T ss_pred ceEeecCCCCCceEEEecCC-CcEEEEeecCCCcceeEecccccccccCCCceE-EEECCCceEEeccCCCCCceeeccc
Confidence 344433 3467899999998 8888888877654 55543221 122233 67789999999998643 221
Q ss_pred -EeeC--CceEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECC--C
Q 002519 756 -VFKG--GTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVG--S 830 (913)
Q Consensus 756 -~~~~--~~~~v~~s~~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d~I~vwdl~--~ 830 (913)
.+.. ...++ .....+++++|+.+|.|++||....+....|.+-..+|..|+.+.||++|++.+...|.+++.. .
T Consensus 572 k~Y~~~~~Fs~~-aTt~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~tyLlLi~t~~~~ 650 (794)
T PF08553_consen 572 KQYSSKNNFSCF-ATTEDGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCKTYLLLIDTLIKD 650 (794)
T ss_pred cccccCCCceEE-EecCCceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecceEEEEEEeeec
Confidence 1111 12223 3344589999999999999996544444556677899999999999999999998877787752 1
Q ss_pred CC---------------C--CceEEEee----------cCCCceEEEEEeC---CCCEEEEEEcCCeEEEEECCC---C-
Q 002519 831 GS---------------E--GECVHELS----------CNGNKFHSCVFHP---TYPSLLVIGCYQSLELWNMSE---N- 876 (913)
Q Consensus 831 ~~---------------~--~~~i~~~~----------~~~~~i~~l~~sp---~g~~l~s~s~dg~I~iwd~~~---~- 876 (913)
+. . +..+..-. .....++...|+- .....++++....+.+|++.. +
T Consensus 651 g~~~g~~GF~~~~~~~~kp~Pr~L~L~pe~~~~~~~~~~~~~~Ft~a~Fnt~~~~~E~~IvtstG~f~v~Wnf~kV~~g~ 730 (794)
T PF08553_consen 651 GKNSGKLGFEKSFGKDKKPQPRRLQLKPEHVAYMQHETGKPISFTPAKFNTGIGKQETSIVTSTGPFVVTWNFKKVKRGK 730 (794)
T ss_pred CCccCccccccccCccCCCCCeEEecCHHHHHHHHhccCCCceeeceEEecCCCCccceEEEeccCEEEEEEHHHHhCCC
Confidence 10 0 01111000 1112233445542 124566666777999999742 2
Q ss_pred -cEEEEcccCCCeEEE--EEeCCCCEEEE
Q 002519 877 -KTMTLTAHEGLIAAL--AVSTETGYVAS 902 (913)
Q Consensus 877 -~~~~~~~h~~~V~~l--~~spdg~~Las 902 (913)
.+..+......|.+- .|..+.++|++
T Consensus 731 ~~~Y~ikry~~~V~~dnF~fg~d~~viva 759 (794)
T PF08553_consen 731 KDPYQIKRYDENVVADNFKFGSDKNVIVA 759 (794)
T ss_pred CCceEEEEcCCceEEccceeCCCCcEEEE
Confidence 344555555566554 34445444443
No 363
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.74 E-value=0.0066 Score=67.07 Aligned_cols=240 Identities=13% Similarity=0.118 Sum_probs=117.6
Q ss_pred ECCCCceeeEeccCCCCeEEE-----EECCCCCEEEEEeC-CCe--EEEEEcCCCCceeEEeccCC-CCeEEEEEcCCCC
Q 002519 661 HTDTLKSKTNLEEHSSLITDV-----RFSPSMPRLATSSF-DKT--VRVWDADNPGYSLRTFMGHS-ASVMSLDFHPNKD 731 (913)
Q Consensus 661 d~~~~~~~~~l~~h~~~V~~l-----~fspdg~~Lasgs~-Dg~--V~Iwdl~~~~~~~~~~~~h~-~~V~sl~fsp~~~ 731 (913)
|..+|..+..+.........+ +|..||+.|+.++. ||. +.+.|+.+ ..+..+.... .......++++++
T Consensus 16 D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t--~~i~QLTdg~g~~~~g~~~s~~~~ 93 (386)
T PF14583_consen 16 DPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLAT--GEITQLTDGPGDNTFGGFLSPDDR 93 (386)
T ss_dssp -TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT---EEEE---SS-B-TTT-EE-TTSS
T ss_pred CCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEccc--CEEEECccCCCCCccceEEecCCC
Confidence 556777777776544433333 56788987766655 554 55666665 3444444333 3233566778877
Q ss_pred eEEEEEeCCCcEEEEEcCCCeeeEEeeC--Cce-EEEEe-cCCCEEEEEEc-----------------------CCeEEE
Q 002519 732 DLICSCDGDGEIRYWSINNGSCTRVFKG--GTA-QMRFQ-PHLGRYLAAAA-----------------------ENVVSI 784 (913)
Q Consensus 732 ~ll~sgs~Dg~I~iwdl~~~~~~~~~~~--~~~-~v~~s-~~~~~ll~~~~-----------------------dg~I~i 784 (913)
.+++.. .+..|+..|+++.+....+.. .-. ...|. ..+...+++.. ...|..
T Consensus 94 ~~~Yv~-~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~ 172 (386)
T PF14583_consen 94 ALYYVK-NGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFT 172 (386)
T ss_dssp EEEEEE-TTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEE
T ss_pred eEEEEE-CCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEE
Confidence 666543 456889999999876555443 222 23443 22233333322 125666
Q ss_pred EECCCCeEEEEecCCCCCeEEEEEcCCCC-EEEEEeCC---e--EEEEECCCCCC-CceEEEeecCCCceEEEEEeCCCC
Q 002519 785 LDAETQACRLSLQGHTKPIDSVCWDPSGE-LLASVSED---S--VRVWTVGSGSE-GECVHELSCNGNKFHSCVFHPTYP 857 (913)
Q Consensus 785 ~D~~t~~~~~~l~~h~~~V~sl~~spdg~-~l~s~s~d---~--I~vwdl~~~~~-~~~i~~~~~~~~~i~~l~~sp~g~ 857 (913)
.|+.+++....+. ....+..+-|+|... +|+.|-++ . -|||-+++... ..+++.-. ....+..=-|.+||.
T Consensus 173 idl~tG~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~-~~e~~gHEfw~~DG~ 250 (386)
T PF14583_consen 173 IDLKTGERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRM-EGESVGHEFWVPDGS 250 (386)
T ss_dssp EETTT--EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS----TTEEEEEEEE-TTSS
T ss_pred EECCCCceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCC-CCcccccccccCCCC
Confidence 7888887655554 456788999999655 66666655 3 37888765422 22222221 123344445899998
Q ss_pred EEEEEEc-----CCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEeCC
Q 002519 858 SLLVIGC-----YQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHD 906 (913)
Q Consensus 858 ~l~s~s~-----dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~D 906 (913)
.|+.-+. +..|.-+|..+++...+.... ....+-.++||++++.=+.|
T Consensus 251 ~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~p-~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 251 TIWYDSYTPGGQDFWIAGYDPDTGERRRLMEMP-WCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp -EEEEEEETTT--EEEEEE-TTT--EEEEEEE--SEEEEEE-TTSSEEEEEE--
T ss_pred EEEEEeecCCCCceEEEeeCCCCCCceEEEeCC-ceeeeEEcCCCCEEEecCCC
Confidence 8776543 336777888887655432222 34456667899887764444
No 364
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.74 E-value=0.0099 Score=64.93 Aligned_cols=215 Identities=10% Similarity=0.102 Sum_probs=126.7
Q ss_pred EEECCCCCEEEEE-eCCCeEEEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEee-
Q 002519 681 VRFSPSMPRLATS-SFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK- 758 (913)
Q Consensus 681 l~fspdg~~Lasg-s~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~- 758 (913)
..|.++...|+-+ -..+.|.-|+..++.. ..+. +...+.++.....+..|+ ++ +..+++++.+++..+..+.
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~--~~~~-~p~~~~~~~~~d~~g~Lv-~~--~~g~~~~~~~~~~~~t~~~~ 103 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIHRLDPETGKK--RVFP-SPGGFSSGALIDAGGRLI-AC--EHGVRLLDPDTGGKITLLAE 103 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEEEecCCcCce--EEEE-CCCCcccceeecCCCeEE-EE--ccccEEEeccCCceeEEecc
Confidence 3466676655444 4477888888875333 2232 233345555444444444 44 3456777776665533321
Q ss_pred -------CCceEEEEecCCCEEEEEEc-----------CCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeC
Q 002519 759 -------GGTAQMRFQPHLGRYLAAAA-----------ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSE 820 (913)
Q Consensus 759 -------~~~~~v~~s~~~~~ll~~~~-----------dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~ 820 (913)
...+...+.+++...+.... -|.|+.+|. .+..+..+..+-..-+.|+|+||++.|+.+..
T Consensus 104 ~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT 182 (307)
T COG3386 104 PEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADT 182 (307)
T ss_pred ccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeC
Confidence 12345778888666655443 134555554 45555555555566678999999997777766
Q ss_pred C--eEEEEECCC--CCCC--ceEEEeecCCCceEEEEEeCCCCEEEEEEcCC-eEEEEECCCCcEE-EEcccCCCeEEEE
Q 002519 821 D--SVRVWTVGS--GSEG--ECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ-SLELWNMSENKTM-TLTAHEGLIAALA 892 (913)
Q Consensus 821 d--~I~vwdl~~--~~~~--~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg-~I~iwd~~~~~~~-~~~~h~~~V~~l~ 892 (913)
. .|..|++.. +... .....+....+..-.++...+|.+.+++...| .|.+|+.. ++++ .+.-....+++++
T Consensus 183 ~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~ 261 (307)
T COG3386 183 PANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPA 261 (307)
T ss_pred CCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccce
Confidence 4 777777652 2111 11222223345566777888888776555554 99999999 6666 4444447888888
Q ss_pred Ee-CCCCEEEEE
Q 002519 893 VS-TETGYVASA 903 (913)
Q Consensus 893 ~s-pdg~~Lasg 903 (913)
|- ++.+.|+..
T Consensus 262 FgG~~~~~L~iT 273 (307)
T COG3386 262 FGGPDLNTLYIT 273 (307)
T ss_pred EeCCCcCEEEEE
Confidence 85 444544433
No 365
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.65 E-value=0.013 Score=67.26 Aligned_cols=188 Identities=8% Similarity=0.101 Sum_probs=98.2
Q ss_pred eEEEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeC-----CceEE----EEec
Q 002519 698 TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG-----GTAQM----RFQP 768 (913)
Q Consensus 698 ~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~-----~~~~v----~~s~ 768 (913)
.|+||+.. +..+..+.-..+.|.++.|..+ ..|+ ....||.+++||+.... ...+.. .+... .+..
T Consensus 62 ~I~iys~s--G~ll~~i~w~~~~iv~~~wt~~-e~Lv-vV~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e~~i~~~~~~ 136 (410)
T PF04841_consen 62 SIQIYSSS--GKLLSSIPWDSGRIVGMGWTDD-EELV-VVQSDGTVRVYDLFGEF-QFSLGEEIEEEKVLECRIFAIWFY 136 (410)
T ss_pred EEEEECCC--CCEeEEEEECCCCEEEEEECCC-CeEE-EEEcCCEEEEEeCCCce-eechhhhccccCcccccccccccC
Confidence 47777775 3444444333378999999875 4455 55679999999987433 111111 11111 0122
Q ss_pred CCCEEEEEEcCCeEEEEECCCCe-EEEEe---cCCC-----C-CeE-EEEEcCCCCEEEEEeCC-eEEEEECCCCCCCce
Q 002519 769 HLGRYLAAAAENVVSILDAETQA-CRLSL---QGHT-----K-PID-SVCWDPSGELLASVSED-SVRVWTVGSGSEGEC 836 (913)
Q Consensus 769 ~~~~ll~~~~dg~I~i~D~~t~~-~~~~l---~~h~-----~-~V~-sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~ 836 (913)
..+ +++...++.|.+..-.... ....+ .... . .+. ...++.+....+....+ .+.+.+-...
T Consensus 137 ~~G-ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~----- 210 (410)
T PF04841_consen 137 KNG-IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSF----- 210 (410)
T ss_pred CCC-EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccc-----
Confidence 233 3334445555554332221 11111 1100 0 000 12344444444444444 5554433211
Q ss_pred EEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEE-Ec-ccCCCeEEEEEeCCCC
Q 002519 837 VHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMT-LT-AHEGLIAALAVSTETG 898 (913)
Q Consensus 837 i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~-~~-~h~~~V~~l~~spdg~ 898 (913)
..+. ..+++..+++||++++|+.-..+|.+.|...+-.+.+. +. .-......+.|.-+.-
T Consensus 211 -~~i~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~da 272 (410)
T PF04841_consen 211 -KQID-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDA 272 (410)
T ss_pred -cccc-CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCc
Confidence 0111 24689999999999999999999999998766555442 22 2234556666655543
No 366
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.61 E-value=0.048 Score=64.60 Aligned_cols=145 Identities=12% Similarity=0.077 Sum_probs=85.2
Q ss_pred CEEEEEeCCCcEEEEECCCCceeeEeccC--C--CCeEE-EEECCCCCEEEEEe------CCCeEEEEEcCCCCceeEEe
Q 002519 646 KLLATGGHDKKAVLWHTDTLKSKTNLEEH--S--SLITD-VRFSPSMPRLATSS------FDKTVRVWDADNPGYSLRTF 714 (913)
Q Consensus 646 ~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h--~--~~V~~-l~fspdg~~Lasgs------~Dg~V~Iwdl~~~~~~~~~~ 714 (913)
..|+.++.|+.|.-+|.++|+.+-..... . ..+++ -... ++ .|++++ .+|.|+.+|.++ ++.+-.+
T Consensus 121 ~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~-~g-~Vivg~~~~~~~~~G~v~AlD~~T-G~~lW~~ 197 (527)
T TIGR03075 121 GKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVV-KG-KVITGISGGEFGVRGYVTAYDAKT-GKLVWRR 197 (527)
T ss_pred CEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEE-CC-EEEEeecccccCCCcEEEEEECCC-CceeEec
Confidence 46677788999999999999988765431 1 11111 1111 34 444443 268899999988 4433322
Q ss_pred ccC-------------------------------CCCeE-EEEEcCCCCeEEEEEeC----CC-----------cEEEEE
Q 002519 715 MGH-------------------------------SASVM-SLDFHPNKDDLICSCDG----DG-----------EIRYWS 747 (913)
Q Consensus 715 ~~h-------------------------------~~~V~-sl~fsp~~~~ll~sgs~----Dg-----------~I~iwd 747 (913)
..- ...++ .+.+.+..+.+++..+. ++ .|.-.|
T Consensus 198 ~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld 277 (527)
T TIGR03075 198 YTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARD 277 (527)
T ss_pred cCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEc
Confidence 211 01111 24566654444433222 12 688889
Q ss_pred cCCCeeeEEeeCC----------ceEE--EEecCCC---EEEEEEcCCeEEEEECCCCeEE
Q 002519 748 INNGSCTRVFKGG----------TAQM--RFQPHLG---RYLAAAAENVVSILDAETQACR 793 (913)
Q Consensus 748 l~~~~~~~~~~~~----------~~~v--~~s~~~~---~ll~~~~dg~I~i~D~~t~~~~ 793 (913)
+++++.+..|... ...+ .+..+++ .++.+..+|.++++|.++++.+
T Consensus 278 ~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 278 PDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred cccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 9999988776431 1112 2324554 4567778999999999999886
No 367
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.56 E-value=0.00028 Score=80.13 Aligned_cols=96 Identities=13% Similarity=0.138 Sum_probs=80.3
Q ss_pred CCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeE-EEEECCCCCEEEEEeCCCeEEEEEcCCCCce
Q 002519 632 STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLIT-DVRFSPSMPRLATSSFDKTVRVWDADNPGYS 710 (913)
Q Consensus 632 H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~-~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~ 710 (913)
-.-.|.-+.|+|.-.++|++..+|.|.++.+. ...+.++..|...++ +++|.|||+.||+|-.||+|++.|++++...
T Consensus 19 l~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 19 LPINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred cccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCce
Confidence 34568889999999999999999999999998 788888988888888 9999999999999999999999999985544
Q ss_pred eEEeccCCCCeEEEEEcC
Q 002519 711 LRTFMGHSASVMSLDFHP 728 (913)
Q Consensus 711 ~~~~~~h~~~V~sl~fsp 728 (913)
..........|.++-|.+
T Consensus 98 ~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 98 VSFLFSVETDISKGIWDR 115 (665)
T ss_pred eccccccccchheeeccc
Confidence 443334556677777763
No 368
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.54 E-value=0.026 Score=62.68 Aligned_cols=211 Identities=12% Similarity=0.149 Sum_probs=122.9
Q ss_pred cEEEEECCCCceeeEeccC-CCCeEE---EEECCC----CCEEEEEeC----------CCeEEEEEcCCC---CceeE--
Q 002519 656 KAVLWHTDTLKSKTNLEEH-SSLITD---VRFSPS----MPRLATSSF----------DKTVRVWDADNP---GYSLR-- 712 (913)
Q Consensus 656 ~V~vwd~~~~~~~~~l~~h-~~~V~~---l~fspd----g~~Lasgs~----------Dg~V~Iwdl~~~---~~~~~-- 712 (913)
.|+|.|..+.+.+.++.-. ...|++ +.|..+ ..+|++|.. .|.|.++++... ...+.
T Consensus 3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i 82 (321)
T PF03178_consen 3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLI 82 (321)
T ss_dssp EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEE
T ss_pred EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEE
Confidence 5788888887777665432 223443 444433 457777743 289999999873 11222
Q ss_pred EeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCe-eeEE--eeCCceEEEEecCCCEEEEEEcCCeEEEE--EC
Q 002519 713 TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS-CTRV--FKGGTAQMRFQPHLGRYLAAAAENVVSIL--DA 787 (913)
Q Consensus 713 ~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~-~~~~--~~~~~~~v~~s~~~~~ll~~~~dg~I~i~--D~ 787 (913)
.-....+.|++|+-. ++.++++. ++.|++|++...+ .... +......+.....+++++++.....|.++ +.
T Consensus 83 ~~~~~~g~V~ai~~~--~~~lv~~~--g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~~ 158 (321)
T PF03178_consen 83 HSTEVKGPVTAICSF--NGRLVVAV--GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMKSVSLLRYDE 158 (321)
T ss_dssp EEEEESS-EEEEEEE--TTEEEEEE--TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSSSEEEEEEET
T ss_pred EEEeecCcceEhhhh--CCEEEEee--cCEEEEEEccCcccchhhheecceEEEEEEeccccEEEEEEcccCEEEEEEEc
Confidence 223467889998877 34455333 5899999998887 4433 33444555566667899999888877776 44
Q ss_pred CCCeEEEEe-cCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCC-----C---CCceEEEeecCCCceEEE---EEeC
Q 002519 788 ETQACRLSL-QGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSG-----S---EGECVHELSCNGNKFHSC---VFHP 854 (913)
Q Consensus 788 ~t~~~~~~l-~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~-----~---~~~~i~~~~~~~~~i~~l---~~sp 854 (913)
...+....- ......+++++|..+++.++++..+ .|.++..... . ....+..+.. +..|+++ .+.+
T Consensus 159 ~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~l-g~~v~~~~~~~l~~ 237 (321)
T PF03178_consen 159 ENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHL-GDIVNSFRRGSLIP 237 (321)
T ss_dssp TTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE--SS-EEEEEE--SS-
T ss_pred cCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEEC-CCccceEEEEEeee
Confidence 333222221 2245668999998666777777777 8888887531 1 1122333333 4556666 4444
Q ss_pred --CCC------EEEEEEcCCeEEEE
Q 002519 855 --TYP------SLLVIGCYQSLELW 871 (913)
Q Consensus 855 --~g~------~l~s~s~dg~I~iw 871 (913)
.+. .++.++.+|.|.+.
T Consensus 238 ~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 238 RSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp -SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred cCCCCcccccceEEEEecCCEEEEE
Confidence 122 48888888888743
No 369
>PRK10115 protease 2; Provisional
Probab=97.52 E-value=0.077 Score=64.98 Aligned_cols=201 Identities=10% Similarity=0.004 Sum_probs=104.3
Q ss_pred CCeEEEEECCCCCEEEEEeC-C----CeEEEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCC-----CcEEE
Q 002519 676 SLITDVRFSPSMPRLATSSF-D----KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD-----GEIRY 745 (913)
Q Consensus 676 ~~V~~l~fspdg~~Lasgs~-D----g~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~D-----g~I~i 745 (913)
-.+..+.|+||+++|+.+.+ + -.|+|.|+.++......+.+- -..++|.+|++.++++...+ ..|++
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~---~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~ 203 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV---EPSFVWANDSWTFYYVRKHPVTLLPYQVWR 203 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc---ceEEEEeeCCCEEEEEEecCCCCCCCEEEE
Confidence 34777899999998887644 2 358889998733222222221 14599999998888776543 36888
Q ss_pred EEcCCC--eeeEEeeCC---ce-EEEEecCCCEEEEEEc---CCeEEEEECC--CCeEEEEecCCCCCeEEEEEcCCCCE
Q 002519 746 WSINNG--SCTRVFKGG---TA-QMRFQPHLGRYLAAAA---ENVVSILDAE--TQACRLSLQGHTKPIDSVCWDPSGEL 814 (913)
Q Consensus 746 wdl~~~--~~~~~~~~~---~~-~v~~s~~~~~ll~~~~---dg~I~i~D~~--t~~~~~~l~~h~~~V~sl~~spdg~~ 814 (913)
+++.++ +....+... .. .+..+.++..++..+. ++.+.+|+.. ++.....+.........+. +..+.+
T Consensus 204 h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l 282 (686)
T PRK10115 204 HTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HYQHRF 282 (686)
T ss_pred EECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eCCCEE
Confidence 888887 434444431 11 1223336666665544 4578888843 3332222222222222222 333343
Q ss_pred EEEEeCC--eEEEEECCCCCCCceEEEeecC--CCceEEEEEeCCCCEEEEEEcCC--eEEEEECCCCcEEEEc
Q 002519 815 LASVSED--SVRVWTVGSGSEGECVHELSCN--GNKFHSCVFHPTYPSLLVIGCYQ--SLELWNMSENKTMTLT 882 (913)
Q Consensus 815 l~s~s~d--~I~vwdl~~~~~~~~i~~~~~~--~~~i~~l~~sp~g~~l~s~s~dg--~I~iwd~~~~~~~~~~ 882 (913)
++....+ ..+|+.+.-... .....+..+ ...+..+.+. .+..+++...++ .|++++..++....+.
T Consensus 283 y~~tn~~~~~~~l~~~~~~~~-~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~~~~~~~~~l~ 354 (686)
T PRK10115 283 YLRSNRHGKNFGLYRTRVRDE-QQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQINRKTREVIGIA 354 (686)
T ss_pred EEEEcCCCCCceEEEecCCCc-ccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEcCCCCceEEec
Confidence 3333332 444443322111 111222222 2357777776 233444444455 4556666544444433
No 370
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.46 E-value=0.0097 Score=70.98 Aligned_cols=192 Identities=16% Similarity=0.212 Sum_probs=106.5
Q ss_pred CCCCeEEEEECCCCCEEEEEe------CCCeEEEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEe---------
Q 002519 674 HSSLITDVRFSPSMPRLATSS------FDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCD--------- 738 (913)
Q Consensus 674 h~~~V~~l~fspdg~~Lasgs------~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs--------- 738 (913)
....+.+.+++|||+.++..- .|..-.||-...++.......+. ..+.-.|+|+|+.+.+...
T Consensus 348 ~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 348 QMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIR 425 (591)
T ss_pred cccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecCC--CCCCceECCCCCceEEEecCcceEEEec
Confidence 334688999999999887765 24443444333223332223332 3778899999775554422
Q ss_pred --CCCcEEEEEcCCCeeeEEeeCCceEEEEecCCCEEEEEEcCCeEEE---EECCCCeEEE----Eec-CCCCCeEEEEE
Q 002519 739 --GDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSI---LDAETQACRL----SLQ-GHTKPIDSVCW 808 (913)
Q Consensus 739 --~Dg~I~iwdl~~~~~~~~~~~~~~~v~~s~~~~~ll~~~~dg~I~i---~D~~t~~~~~----~l~-~h~~~V~sl~~ 808 (913)
..+.|.+.+++.+.....+.+.+..+.|++++..+++.. ++.|++ .....+.... .+. +-...+.++.|
T Consensus 426 ~~~~gql~~~~vd~ge~~~~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W 504 (591)
T PRK13616 426 DPATGQLARTPVDASAVASRVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDW 504 (591)
T ss_pred cCCCceEEEEeccCchhhhccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccceE
Confidence 223455556655544435567789999999999988876 467776 4444443111 122 22334688999
Q ss_pred cCCCCEEEEEeCCeEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEE
Q 002519 809 DPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLEL 870 (913)
Q Consensus 809 spdg~~l~s~s~d~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~i 870 (913)
..++.+++........+|.+.-.........-......+..++-.++ .|++...++.+.+
T Consensus 505 ~~~~~L~V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~~l 564 (591)
T PRK13616 505 RTGDSLVVGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--TVYVTDARAVLQL 564 (591)
T ss_pred ecCCEEEEEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc--eEEEEcCCceEEe
Confidence 99998664433223334444322111111011111344555655542 4666666664444
No 371
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.42 E-value=0.022 Score=62.31 Aligned_cols=186 Identities=17% Similarity=0.081 Sum_probs=118.3
Q ss_pred CCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEecc-----CCCCeEEEEECCCCCEEEEEeC-----C----C
Q 002519 632 STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE-----HSSLITDVRFSPSMPRLATSSF-----D----K 697 (913)
Q Consensus 632 H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~-----h~~~V~~l~fspdg~~Lasgs~-----D----g 697 (913)
+.+.+.++..-.++..|+++. .-+++++.+++..+..+.. -....+++...|+|.+.++... . .
T Consensus 64 ~p~~~~~~~~~d~~g~Lv~~~--~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~ 141 (307)
T COG3386 64 SPGGFSSGALIDAGGRLIACE--HGVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERP 141 (307)
T ss_pred CCCCcccceeecCCCeEEEEc--cccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCC
Confidence 334455655555555666553 3467777766655333321 1234667888999887766544 1 1
Q ss_pred eEEEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCC--C----eeeEE-e---eCCceEEEEe
Q 002519 698 TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN--G----SCTRV-F---KGGTAQMRFQ 767 (913)
Q Consensus 698 ~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~--~----~~~~~-~---~~~~~~v~~s 767 (913)
.-+||.++..+..++.+..+-..-+.|+|+||++.++++=+..+.|..|++.. + +.... + ++....++..
T Consensus 142 ~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vD 221 (307)
T COG3386 142 TGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVD 221 (307)
T ss_pred cceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEe
Confidence 12466665336667777766677788999999998887777778899888762 1 11111 1 1334457777
Q ss_pred cCCCEEEEEEcCC-eEEEEECCCCeEEEEecCCCCCeEEEEEcC-CCCEEEEEeC
Q 002519 768 PHLGRYLAAAAEN-VVSILDAETQACRLSLQGHTKPIDSVCWDP-SGELLASVSE 820 (913)
Q Consensus 768 ~~~~~ll~~~~dg-~I~i~D~~t~~~~~~l~~h~~~V~sl~~sp-dg~~l~s~s~ 820 (913)
.++...+++...| .|.+|+.. ++.+..+......+++++|-- +.+.|++.+.
T Consensus 222 adG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~ 275 (307)
T COG3386 222 ADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTLYITSA 275 (307)
T ss_pred CCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeCCCcCEEEEEec
Confidence 7777665555554 99999998 888888887767888888854 4454444443
No 372
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.40 E-value=0.0031 Score=70.37 Aligned_cols=134 Identities=13% Similarity=0.124 Sum_probs=92.9
Q ss_pred CEEEE-EEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCC--------EEEEEeCCeEEEEECCCCCCCceEEEee
Q 002519 771 GRYLA-AAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGE--------LLASVSEDSVRVWTVGSGSEGECVHELS 841 (913)
Q Consensus 771 ~~ll~-~~~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~--------~l~s~s~d~I~vwdl~~~~~~~~i~~~~ 841 (913)
+.++. +.....|+-.|++.|+.+.+.+.+.. |.-+.+.|+.+ .|+..+...|.-||.|-.... .+....
T Consensus 346 nlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~-kl~~~q 423 (644)
T KOG2395|consen 346 NLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN-KLAVVQ 423 (644)
T ss_pred ceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcc-eeeeee
Confidence 33433 33456888999999999999887766 77778888654 344444449999999854331 222222
Q ss_pred c----CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcE-EEEcccCCCeEEEEEeCCCCEEEEEeCCC
Q 002519 842 C----NGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKT-MTLTAHEGLIAALAVSTETGYVASASHDK 907 (913)
Q Consensus 842 ~----~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~-~~~~~h~~~V~~l~~spdg~~Lasgs~DG 907 (913)
. ....+.|++-..+| +|++|+.+|.|++||-..... ..+++-..+|..|..+.+|++|+..+..-
T Consensus 424 ~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~ty 493 (644)
T KOG2395|consen 424 SKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCKTY 493 (644)
T ss_pred ccccccccccceeeecCCc-eEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEecccE
Confidence 2 13445666655555 799999999999999733322 26788899999999999999887666443
No 373
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.39 E-value=0.032 Score=58.09 Aligned_cols=229 Identities=12% Similarity=0.108 Sum_probs=129.9
Q ss_pred EEEEEecCC-CEEEEEeCCCc-EEEEECCCCceeeEeccCCCC--eEEEEECCCCCEEEEEeCC-----CeEEEEEcCCC
Q 002519 637 ICCHFSSDG-KLLATGGHDKK-AVLWHTDTLKSKTNLEEHSSL--ITDVRFSPSMPRLATSSFD-----KTVRVWDADNP 707 (913)
Q Consensus 637 ~~l~fspdg-~~Lasgs~Dg~-V~vwd~~~~~~~~~l~~h~~~--V~~l~fspdg~~Lasgs~D-----g~V~Iwdl~~~ 707 (913)
..|+|+|.- .-++.+-.-|+ ..|||........++...++. --.=.|++||.+|+..-.| |.|-|||.+..
T Consensus 71 Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~ 150 (366)
T COG3490 71 HGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREG 150 (366)
T ss_pred CCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccc
Confidence 356777743 45555555554 467888776665554332211 1123699999999887543 78999999976
Q ss_pred CceeEEeccCCCCeEEEEEcCCCCeEEEEEeC-----------------CCcEEEEEcCCCeeeEEeeC-------CceE
Q 002519 708 GYSLRTFMGHSASVMSLDFHPNKDDLICSCDG-----------------DGEIRYWSINNGSCTRVFKG-------GTAQ 763 (913)
Q Consensus 708 ~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~-----------------Dg~I~iwdl~~~~~~~~~~~-------~~~~ 763 (913)
-..+-.+..|.-.-..+.|.+||+.++++.+. .-.+.+.|..++..+.+..- .+..
T Consensus 151 fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRH 230 (366)
T COG3490 151 FQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRH 230 (366)
T ss_pred cceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceee
Confidence 66677888888888889999999877655330 11233344444444433221 1223
Q ss_pred EEEecCCCEEEEEEcCC-----eEEEEECCCCeEEEEecC-------CCCCeEEEEEcCCCCEEEEEeCC--eEEEEECC
Q 002519 764 MRFQPHLGRYLAAAAEN-----VVSILDAETQACRLSLQG-------HTKPIDSVCWDPSGELLASVSED--SVRVWTVG 829 (913)
Q Consensus 764 v~~s~~~~~ll~~~~dg-----~I~i~D~~t~~~~~~l~~-------h~~~V~sl~~spdg~~l~s~s~d--~I~vwdl~ 829 (913)
+....++..++.+-..| --.+=-...++.+.-+.. ....|-+|+.+.+..+++..+-. ...+||..
T Consensus 231 ld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~ 310 (366)
T COG3490 231 LDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAA 310 (366)
T ss_pred eeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcC
Confidence 44444443333332221 111111122233222221 22457788888766666666544 88999998
Q ss_pred CCCCCceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEE
Q 002519 830 SGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWN 872 (913)
Q Consensus 830 ~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd 872 (913)
++. .+.+. .-..++-.-+...-|++.+.+|.|.++.
T Consensus 311 tG~---vv~~a----~l~daaGva~~~~gf~vssg~G~~~~~s 346 (366)
T COG3490 311 TGA---VVSEA----ALPDAAGVAAAKGGFAVSSGQGRIIFYS 346 (366)
T ss_pred CCc---EEecc----cccccccceeccCceEEecCCceEEecc
Confidence 873 33221 1112223344455588888889888884
No 374
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.35 E-value=0.18 Score=60.86 Aligned_cols=270 Identities=14% Similarity=0.136 Sum_probs=152.5
Q ss_pred CCEEEEEEecCCCEEEEEeCCCcEEEEEC--CCCceeeEe--ccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCc
Q 002519 634 SKVICCHFSSDGKLLATGGHDKKAVLWHT--DTLKSKTNL--EEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGY 709 (913)
Q Consensus 634 ~~V~~l~fspdg~~Lasgs~Dg~V~vwd~--~~~~~~~~l--~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~ 709 (913)
..|.-..|-.|..+|.++..||.+.-|-+ .++..-..- .-...++.--.|+..++.-+.++.|+-..+|.-+. +
T Consensus 584 RSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~--k 661 (1096)
T KOG1897|consen 584 RSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNG--K 661 (1096)
T ss_pred hheeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCC--c
Confidence 45666667677889999999998876654 444332222 22345666667776666555555576666776653 2
Q ss_pred eeEEeccCCCCeEEE-EEcCC-CCeEEEEEeCCCcEEEEEcCCCee--eEEe--eCCceEEEEecCCCEEEEEEc-----
Q 002519 710 SLRTFMGHSASVMSL-DFHPN-KDDLICSCDGDGEIRYWSINNGSC--TRVF--KGGTAQMRFQPHLGRYLAAAA----- 778 (913)
Q Consensus 710 ~~~~~~~h~~~V~sl-~fsp~-~~~ll~sgs~Dg~I~iwdl~~~~~--~~~~--~~~~~~v~~s~~~~~ll~~~~----- 778 (913)
.+.+-... ..+..+ .|+.+ ....++++. .+.+++.-+..-.. +++. ......+++.+..-.+.+.+.
T Consensus 662 Lv~spls~-kev~~~c~f~s~a~~d~l~~~~-~~~l~i~tid~iqkl~irtvpl~~~prrI~~q~~sl~~~v~s~r~e~~ 739 (1096)
T KOG1897|consen 662 LVYSPLSL-KEVNHMCPFNSDAYPDSLASAN-GGALTIGTIDEIQKLHIRTVPLGESPRRICYQESSLTFGVLSNRIESS 739 (1096)
T ss_pred EEEeccch-HHhhhhcccccccCCceEEEec-CCceEEEEecchhhcceeeecCCCChhheEecccceEEEEEecccccc
Confidence 22211111 111111 12221 222343443 56677776654322 2222 233445666653333333222
Q ss_pred ------C---CeEEEEECCCCeEEEEecCC-C---CCeEEEEEcCC-CCEEEEEeC-----------CeEEEEECCCCCC
Q 002519 779 ------E---NVVSILDAETQACRLSLQGH-T---KPIDSVCWDPS-GELLASVSE-----------DSVRVWTVGSGSE 833 (913)
Q Consensus 779 ------d---g~I~i~D~~t~~~~~~l~~h-~---~~V~sl~~spd-g~~l~s~s~-----------d~I~vwdl~~~~~ 833 (913)
+ ..++++|-.+.+.+...+-. . ..|.++.|..| +.++++|.. +.|.||.+.....
T Consensus 740 ~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~ 819 (1096)
T KOG1897|consen 740 AEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNS 819 (1096)
T ss_pred hhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCc
Confidence 1 25677787777655543321 1 23555568887 567777652 2677888776555
Q ss_pred CceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEE
Q 002519 834 GECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKL 911 (913)
Q Consensus 834 ~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~Lasgs~DG~I~I 911 (913)
.+.+.+....+....-+.| +|++ .++-...|++|++.+++.+ ....+...+..+...-.+..|+.|.-=++|.+
T Consensus 820 L~~v~e~~v~Gav~aL~~f--ngkl--lA~In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitl 894 (1096)
T KOG1897|consen 820 LELVAETVVKGAVYALVEF--NGKL--LAGINQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITL 894 (1096)
T ss_pred eeeeeeeeeccceeehhhh--CCeE--EEecCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEE
Confidence 5566655543333322333 3443 3445568999999998666 55578888999999888889998876565544
No 375
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=97.35 E-value=0.043 Score=62.66 Aligned_cols=118 Identities=10% Similarity=0.082 Sum_probs=81.5
Q ss_pred CCEEEEEEecC----CCEEEEEeCCCcEEEEECC-----CCceeeEec-cCCC--C--eEEEEECCCCCEEEEEeCCCeE
Q 002519 634 SKVICCHFSSD----GKLLATGGHDKKAVLWHTD-----TLKSKTNLE-EHSS--L--ITDVRFSPSMPRLATSSFDKTV 699 (913)
Q Consensus 634 ~~V~~l~fspd----g~~Lasgs~Dg~V~vwd~~-----~~~~~~~l~-~h~~--~--V~~l~fspdg~~Lasgs~Dg~V 699 (913)
..|..+.|.|- ...|++.-..+.|.||-+- ..+.+..-. .... + -..+.|+|....|++-.....-
T Consensus 57 EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvS 136 (671)
T PF15390_consen 57 EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVS 136 (671)
T ss_pred ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCcee
Confidence 46889999884 3345555678899999875 222222111 1111 1 2356799999988877766666
Q ss_pred EEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCC
Q 002519 700 RVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG 751 (913)
Q Consensus 700 ~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~ 751 (913)
.++++......++.-....+.|.|.||..||.+++++.+..=.-+|||-...
T Consensus 137 V~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qK 188 (671)
T PF15390_consen 137 VLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQK 188 (671)
T ss_pred EeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCchh
Confidence 6778776555555544677889999999999999988887778899986543
No 376
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.33 E-value=0.0077 Score=69.59 Aligned_cols=104 Identities=16% Similarity=0.197 Sum_probs=74.5
Q ss_pred CCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCce---e--eEe-ccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcC
Q 002519 632 STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKS---K--TNL-EEHSSLITDVRFSPSMPRLATSSFDKTVRVWDAD 705 (913)
Q Consensus 632 H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~---~--~~l-~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~ 705 (913)
-.+.+..+.++++..++|.|+..|.|.|+-+..... + ..+ +.|...|+|++|++|+..|++|...|+|.+-.++
T Consensus 75 ~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~ 154 (726)
T KOG3621|consen 75 ATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELD 154 (726)
T ss_pred ccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEec
Confidence 455667778899999999999999999998764211 1 111 2378899999999999999999999999999887
Q ss_pred CC---CceeEEeccCCCCeEEEEEcCCCCeEEEEE
Q 002519 706 NP---GYSLRTFMGHSASVMSLDFHPNKDDLICSC 737 (913)
Q Consensus 706 ~~---~~~~~~~~~h~~~V~sl~fsp~~~~ll~sg 737 (913)
.. ......+......|.-|++.. .++|++.
T Consensus 155 s~~~~~~~~q~il~~ds~IVQlD~~q--~~LLVSt 187 (726)
T KOG3621|consen 155 SRQAFLSKSQEILSEDSEIVQLDYLQ--SYLLVST 187 (726)
T ss_pred hhhhhccccceeeccCcceEEeeccc--ceehHhh
Confidence 61 112233444567777777663 3455443
No 377
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=97.28 E-value=0.24 Score=56.27 Aligned_cols=260 Identities=14% Similarity=0.159 Sum_probs=144.5
Q ss_pred CCEEEEEeCCCcEEEEECCCCcee---eEe-ccCCCCeEEEEECC----CCCEEEEEeCCCeEEEEEcCCCC--------
Q 002519 645 GKLLATGGHDKKAVLWHTDTLKSK---TNL-EEHSSLITDVRFSP----SMPRLATSSFDKTVRVWDADNPG-------- 708 (913)
Q Consensus 645 g~~Lasgs~Dg~V~vwd~~~~~~~---~~l-~~h~~~V~~l~fsp----dg~~Lasgs~Dg~V~Iwdl~~~~-------- 708 (913)
...|++|+..|.++||+....... ..+ ..-..+|..|..-. .....++.=.-..+.||.+....
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~~ 116 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGNQ 116 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCcE
Confidence 368999999999999998543211 111 12346777776532 12223333456778888884211
Q ss_pred ceeEEeccCC--CCeEEEEEcC----CCCeEEEEEeCCCcEEEEEcCCCeeeEEeeC--CceEEEEecCCCEEEEEEcCC
Q 002519 709 YSLRTFMGHS--ASVMSLDFHP----NKDDLICSCDGDGEIRYWSINNGSCTRVFKG--GTAQMRFQPHLGRYLAAAAEN 780 (913)
Q Consensus 709 ~~~~~~~~h~--~~V~sl~fsp----~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~--~~~~v~~s~~~~~ll~~~~dg 780 (913)
..+.....|. .....+++-| .++.+|++-+.||.+.+|+-+.....+.+.+ -...+.|.+..+.+++++.+.
T Consensus 117 ~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~~tDsfvt~sss~ 196 (418)
T PF14727_consen 117 YQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDFLLPGPLCYCPRTDSFVTASSSW 196 (418)
T ss_pred EEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCCCCCcCeEEeecCCEEEEecCce
Confidence 1223333333 2233344433 2357899999999999999887665555554 235688999999999999998
Q ss_pred eEEEEECCC--------------------Ce---EEEEecCCCCCe---EEEEEcCCCCEEEEEeCCeEEEEECCCCCCC
Q 002519 781 VVSILDAET--------------------QA---CRLSLQGHTKPI---DSVCWDPSGELLASVSEDSVRVWTVGSGSEG 834 (913)
Q Consensus 781 ~I~i~D~~t--------------------~~---~~~~l~~h~~~V---~sl~~spdg~~l~s~s~d~I~vwdl~~~~~~ 834 (913)
.|..|.... ++ +-+++.. .+.+ ..+.++.....|++-++.++.+.+-. | ..
T Consensus 197 ~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nl-GE~~l~i~v~~~~~~~~~IvvLger~Lf~l~~~-G-~l 273 (418)
T PF14727_consen 197 TLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNL-GEQALDIQVVRFSSSESDIVVLGERSLFCLKDN-G-SL 273 (418)
T ss_pred eEEEecHHHhhhccccccccccccccccccccccceeEEEC-CceeEEEEEEEcCCCCceEEEEecceEEEEcCC-C-eE
Confidence 888885421 00 1111111 1223 33333334446666666666666653 2 33
Q ss_pred ceEEEeecCCCceEEEEEeC----CC---CEEEEEEcCCeEEEEECCCCcEEEEcccCCCeEEE---EEeCCCCEEEEEe
Q 002519 835 ECVHELSCNGNKFHSCVFHP----TY---PSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAAL---AVSTETGYVASAS 904 (913)
Q Consensus 835 ~~i~~~~~~~~~i~~l~~sp----~g---~~l~s~s~dg~I~iwd~~~~~~~~~~~h~~~V~~l---~~spdg~~Lasgs 904 (913)
+..+.+.. .+...+.|.- ++ ..+++++.++.+.||.-.+ ++.-........++ .|..-...|++-+
T Consensus 274 ~~~krLd~--~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~~--L~WsA~l~~~PVal~v~~~~~~~G~IV~Ls 349 (418)
T PF14727_consen 274 RFQKRLDY--NPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDTT--LVWSAQLPHVPVALSVANFNGLKGLIVSLS 349 (418)
T ss_pred EEEEecCC--ceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCCe--EEEecCCCCCCEEEEecccCCCCceEEEEc
Confidence 33333322 2222222222 22 2489999999999986332 22111111111222 2333345788888
Q ss_pred CCCcEEE
Q 002519 905 HDKFVKL 911 (913)
Q Consensus 905 ~DG~I~I 911 (913)
.||.|.+
T Consensus 350 ~~G~L~v 356 (418)
T PF14727_consen 350 DEGQLSV 356 (418)
T ss_pred CCCcEEE
Confidence 8888865
No 378
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=97.27 E-value=0.069 Score=59.60 Aligned_cols=219 Identities=11% Similarity=0.100 Sum_probs=106.9
Q ss_pred CCCEEEEEe-CCCcEEEEECCC----CceeeEecc---CC----CCeEEEEECCCCCEEEEEeC------CCeEEEEEcC
Q 002519 644 DGKLLATGG-HDKKAVLWHTDT----LKSKTNLEE---HS----SLITDVRFSPSMPRLATSSF------DKTVRVWDAD 705 (913)
Q Consensus 644 dg~~Lasgs-~Dg~V~vwd~~~----~~~~~~l~~---h~----~~V~~l~fspdg~~Lasgs~------Dg~V~Iwdl~ 705 (913)
+.++|+..+ ..+.|+|+|+.+ -+..++++. +. ..-..+..-|+|+.++++-. -|-+.++|-+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 456777776 678999999983 344555543 11 12223444578888887632 2457777776
Q ss_pred CCCceeEEecc---CCCCeEEEEEcCCCCeEEEEEe--------------------CCCcEEEEEcCCCeeeEEeeCC--
Q 002519 706 NPGYSLRTFMG---HSASVMSLDFHPNKDDLICSCD--------------------GDGEIRYWSINNGSCTRVFKGG-- 760 (913)
Q Consensus 706 ~~~~~~~~~~~---h~~~V~sl~fsp~~~~ll~sgs--------------------~Dg~I~iwdl~~~~~~~~~~~~-- 760 (913)
+ -........ ....-+.+-|.|..+.+| |.. ...++.+||+.+.+.+.++.-+
T Consensus 166 t-f~v~g~We~~~~~~~~gYDfw~qpr~nvMi-SSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~ 243 (461)
T PF05694_consen 166 T-FEVKGRWEKDRGPQPFGYDFWYQPRHNVMI-SSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEE 243 (461)
T ss_dssp T---EEEE--SB-TT------EEEETTTTEEE-E-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TT
T ss_pred c-ccccceeccCCCCCCCCCCeEEcCCCCEEE-EeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCC
Confidence 5 333333332 233456677888765444 532 2467999999999999988754
Q ss_pred ---ceEEEEec--CCCEEEEEEc-CCeEEEE-ECCCC----eEEEEecCC-----------------CCCeEEEEEcCCC
Q 002519 761 ---TAQMRFQP--HLGRYLAAAA-ENVVSIL-DAETQ----ACRLSLQGH-----------------TKPIDSVCWDPSG 812 (913)
Q Consensus 761 ---~~~v~~s~--~~~~ll~~~~-dg~I~i~-D~~t~----~~~~~l~~h-----------------~~~V~sl~~spdg 812 (913)
...++|.. +..+-++++. ...|..| ..+.+ +.+..+... ..-|+.|.+|.|.
T Consensus 244 g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDD 323 (461)
T PF05694_consen 244 GQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDD 323 (461)
T ss_dssp EEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS
T ss_pred CCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCC
Confidence 23466654 4445444443 4455444 33444 223333211 2347899999999
Q ss_pred CEEEEEeCC--eEEEEECCCCCCCceEEEeecCC----------------CceEEEEEeCCCCEEEEEEc
Q 002519 813 ELLASVSED--SVRVWTVGSGSEGECVHELSCNG----------------NKFHSCVFHPTYPSLLVIGC 864 (913)
Q Consensus 813 ~~l~s~s~d--~I~vwdl~~~~~~~~i~~~~~~~----------------~~i~~l~~sp~g~~l~s~s~ 864 (913)
++|+.++-- .|+.||+......+.+..+...+ +...-+..|-||++|++..+
T Consensus 324 rfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTnS 393 (461)
T PF05694_consen 324 RFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTNS 393 (461)
T ss_dssp -EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE--
T ss_pred CEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEee
Confidence 988888765 89999999877777766544321 12356778899999888763
No 379
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.25 E-value=0.29 Score=51.63 Aligned_cols=192 Identities=14% Similarity=0.117 Sum_probs=116.8
Q ss_pred cceeeeEeecCC-CCEEEEEEecCCCEEEEEeCCC--cEEEEECCCCceeeEeccCC-CCeEEEEECCCCCEEEEEeCCC
Q 002519 622 SFKEANSVRAST-SKVICCHFSSDGKLLATGGHDK--KAVLWHTDTLKSKTNLEEHS-SLITDVRFSPSMPRLATSSFDK 697 (913)
Q Consensus 622 ~~~~~~~l~~H~-~~V~~l~fspdg~~Lasgs~Dg--~V~vwd~~~~~~~~~l~~h~-~~V~~l~fspdg~~Lasgs~Dg 697 (913)
.++.+.++.... .-.-.+.|..+|.++-+.+.-| .|+.+|+++++......-.. -.--.|+.. +++.....=.++
T Consensus 32 ~~~vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~ 110 (264)
T PF05096_consen 32 SYEVVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEG 110 (264)
T ss_dssp EEEEEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSS
T ss_pred eeEEEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCC
Confidence 445555554222 2344677878888888887766 79999999998776544321 112223333 223333344588
Q ss_pred eEEEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeC--------CceEEEEecC
Q 002519 698 TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG--------GTAQMRFQPH 769 (913)
Q Consensus 698 ~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~--------~~~~v~~s~~ 769 (913)
...+||.++ -+.+..+. ....=+.++. ++..++ ..+....|+++|..+.+..+.+.. ..+.+.|.
T Consensus 111 ~~f~yd~~t-l~~~~~~~-y~~EGWGLt~--dg~~Li-~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-- 183 (264)
T PF05096_consen 111 TGFVYDPNT-LKKIGTFP-YPGEGWGLTS--DGKRLI-MSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-- 183 (264)
T ss_dssp EEEEEETTT-TEEEEEEE--SSS--EEEE--CSSCEE-EE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE--
T ss_pred eEEEEcccc-ceEEEEEe-cCCcceEEEc--CCCEEE-EECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE--
Confidence 999999987 55666664 3456677773 466666 455577899999988877665532 12334454
Q ss_pred CCEEEEEEc-CCeEEEEECCCCeEEEEecC------------C---CCCeEEEEEcCCCCEEEEEeCC
Q 002519 770 LGRYLAAAA-ENVVSILDAETQACRLSLQG------------H---TKPIDSVCWDPSGELLASVSED 821 (913)
Q Consensus 770 ~~~ll~~~~-dg~I~i~D~~t~~~~~~l~~------------h---~~~V~sl~~spdg~~l~s~s~d 821 (913)
++.+++-.. ...|...|..+|+++..+.. . .+..+.|+|+|....|+..+..
T Consensus 184 ~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~ 251 (264)
T PF05096_consen 184 NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKL 251 (264)
T ss_dssp TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT
T ss_pred cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeCC
Confidence 456666554 67899999999998876521 1 3458899999988877666665
No 380
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.24 E-value=0.13 Score=58.44 Aligned_cols=88 Identities=20% Similarity=0.325 Sum_probs=57.6
Q ss_pred EEEEecCCCEEEEEeCCCcEEE---EECC-CC----ceeeEecc---CC--CCeEEEEEC-----------CCCCEEEEE
Q 002519 638 CCHFSSDGKLLATGGHDKKAVL---WHTD-TL----KSKTNLEE---HS--SLITDVRFS-----------PSMPRLATS 693 (913)
Q Consensus 638 ~l~fspdg~~Lasgs~Dg~V~v---wd~~-~~----~~~~~l~~---h~--~~V~~l~fs-----------pdg~~Lasg 693 (913)
+++.+|++++||.+..+..|.+ |+.. .+ .......+ +. ..|+++.|- +|...|++|
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG 85 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG 85 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence 4678899999999987777665 6442 11 11222211 11 467777663 346789999
Q ss_pred eCCCeEEEEEcCCCCceeEEeccCCCCeEEEEEc
Q 002519 694 SFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFH 727 (913)
Q Consensus 694 s~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fs 727 (913)
..+|.|++|... +..+..-.-|..+|..|.+.
T Consensus 86 ~ssG~vrfyte~--G~LL~~Q~~h~~pV~~ik~~ 117 (415)
T PF14655_consen 86 TSSGYVRFYTEN--GVLLLSQLLHEEPVLKIKCR 117 (415)
T ss_pred ecccEEEEEecc--chHHHHHhcCccceEEEEec
Confidence 999999999885 44444444577777777764
No 381
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=97.24 E-value=0.15 Score=56.87 Aligned_cols=66 Identities=9% Similarity=0.016 Sum_probs=40.8
Q ss_pred CceEEEEEeC-------CCCEEEEEEcCCeEEEEECCCCcEE----EE-cccCCCeEEEEEeCCCCEEEEEeCCCcEE
Q 002519 845 NKFHSCVFHP-------TYPSLLVIGCYQSLELWNMSENKTM----TL-TAHEGLIAALAVSTETGYVASASHDKFVK 910 (913)
Q Consensus 845 ~~i~~l~~sp-------~g~~l~s~s~dg~I~iwd~~~~~~~----~~-~~h~~~V~~l~~spdg~~Lasgs~DG~I~ 910 (913)
..+..+.|-. .+.+|++.-..+.|...++.....+ .+ ......+..|++.|||.++++...+|.|+
T Consensus 253 ~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 253 SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp --EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence 3455555543 3344555444568888887755322 22 23455899999999999888888888875
No 382
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.20 E-value=0.049 Score=65.07 Aligned_cols=186 Identities=11% Similarity=0.077 Sum_probs=105.1
Q ss_pred CCCCeEEEEEcCCCCeEEEEEe-----CCC--cEEEEEcCCCeeeEEeeC-CceEEEEecCCCEEEEEEcC---------
Q 002519 717 HSASVMSLDFHPNKDDLICSCD-----GDG--EIRYWSINNGSCTRVFKG-GTAQMRFQPHLGRYLAAAAE--------- 779 (913)
Q Consensus 717 h~~~V~sl~fsp~~~~ll~sgs-----~Dg--~I~iwdl~~~~~~~~~~~-~~~~v~~s~~~~~ll~~~~d--------- 779 (913)
....+.+.+++|+++.++++.. .|. .|.+++..... .....+ ....-.|+|+++.+++....
T Consensus 348 ~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~-~~lt~g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 348 QMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVA-VQVLEGHSLTRPSWSLDADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred cccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcc-eeeecCCCCCCceECCCCCceEEEecCcceEEEecc
Confidence 3346788999999998877662 233 55555653222 222222 35678899998877766533
Q ss_pred ---CeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEE---EECCCCCCCce--EEEeec-CCCceEEE
Q 002519 780 ---NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRV---WTVGSGSEGEC--VHELSC-NGNKFHSC 850 (913)
Q Consensus 780 ---g~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d~I~v---wdl~~~~~~~~--i~~~~~-~~~~i~~l 850 (913)
+.+.+.+++.++... .....|..+.|+|||..|+....+.|.| -....+. ... ...+.. ....+..+
T Consensus 427 ~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~-~~l~~~~~l~~~l~~~~~~l 502 (591)
T PRK13616 427 PATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQ-YALTNPREVGPGLGDTAVSL 502 (591)
T ss_pred CCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCc-eeecccEEeecccCCccccc
Confidence 233333443332222 2345799999999999888777666666 3322221 111 112222 23335788
Q ss_pred EEeCCCCEEEEEEcCC--eEEEEECCCCcEEEEcc--cCCCeEEEEEeCCCCEEEEEeCCCcEE
Q 002519 851 VFHPTYPSLLVIGCYQ--SLELWNMSENKTMTLTA--HEGLIAALAVSTETGYVASASHDKFVK 910 (913)
Q Consensus 851 ~~sp~g~~l~s~s~dg--~I~iwd~~~~~~~~~~~--h~~~V~~l~~spdg~~Lasgs~DG~I~ 910 (913)
.|..++.. +++..++ .|+..++.......+.. ....+.+|+-+++ .|+....+|.+.
T Consensus 503 ~W~~~~~L-~V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~~ 563 (591)
T PRK13616 503 DWRTGDSL-VVGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--TVYVTDARAVLQ 563 (591)
T ss_pred eEecCCEE-EEEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc--eEEEEcCCceEE
Confidence 99999985 4555554 34444555433222233 2566777776663 355555566443
No 383
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.20 E-value=0.17 Score=53.43 Aligned_cols=192 Identities=13% Similarity=0.130 Sum_probs=118.7
Q ss_pred eeeEeccC-CCCeEEEEECCCCCEEEEEeCCC--eEEEEEcCCCCceeEEe-ccCCCCeEEEEEcCCCCeEEEEEeCCCc
Q 002519 667 SKTNLEEH-SSLITDVRFSPSMPRLATSSFDK--TVRVWDADNPGYSLRTF-MGHSASVMSLDFHPNKDDLICSCDGDGE 742 (913)
Q Consensus 667 ~~~~l~~h-~~~V~~l~fspdg~~Lasgs~Dg--~V~Iwdl~~~~~~~~~~-~~h~~~V~sl~fsp~~~~ll~sgs~Dg~ 742 (913)
.+.++... ....-.+.|..++.++-+.+.-| .|+.+|+.+ ++..... ....-.-..|+.. ++.++.-.-.++.
T Consensus 35 vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~t-g~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~ 111 (264)
T PF05096_consen 35 VVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLET-GKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGT 111 (264)
T ss_dssp EEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTT-SSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSE
T ss_pred EEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCC-CcEEEEEECCccccceeEEEE--CCEEEEEEecCCe
Confidence 34444422 23345778877787777777755 799999998 4444332 2233333445555 3456666778999
Q ss_pred EEEEEcCCCeeeEEeeCCceEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCC-----CCCeEEEEEcCCCCEEEE
Q 002519 743 IRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGH-----TKPIDSVCWDPSGELLAS 817 (913)
Q Consensus 743 I~iwdl~~~~~~~~~~~~~~~v~~s~~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h-----~~~V~sl~~spdg~~l~s 817 (913)
..+||.++.+.+..+.-....--...++..++.+.....|+++|..+.+.+..+... -..++-+.|. +|.+.|-
T Consensus 112 ~f~yd~~tl~~~~~~~y~~EGWGLt~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyAN 190 (264)
T PF05096_consen 112 GFVYDPNTLKKIGTFPYPGEGWGLTSDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYAN 190 (264)
T ss_dssp EEEEETTTTEEEEEEE-SSS--EEEECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEE
T ss_pred EEEEccccceEEEEEecCCcceEEEcCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEE
Confidence 999999999988887644333223367788888888999999999988776666532 1246667776 5666655
Q ss_pred EeCC-eEEEEECCCCCCCceEEEeec---------------CCCceEEEEEeCCCCEEEEEEcC
Q 002519 818 VSED-SVRVWTVGSGSEGECVHELSC---------------NGNKFHSCVFHPTYPSLLVIGCY 865 (913)
Q Consensus 818 ~s~d-~I~vwdl~~~~~~~~i~~~~~---------------~~~~i~~l~~sp~g~~l~s~s~d 865 (913)
.-.. .|...|..+| .++..+.. ...-.+.|+|.|....|++.+..
T Consensus 191 VW~td~I~~Idp~tG---~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~ 251 (264)
T PF05096_consen 191 VWQTDRIVRIDPETG---KVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKL 251 (264)
T ss_dssp ETTSSEEEEEETTT----BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT
T ss_pred eCCCCeEEEEeCCCC---eEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeCC
Confidence 5544 8888888777 33333211 13457899999988888777754
No 384
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.19 E-value=0.078 Score=53.81 Aligned_cols=204 Identities=11% Similarity=0.097 Sum_probs=108.2
Q ss_pred EEEEEeCCCeEEEEEcCCCCceeEEeccCCCCeEEEEEcC-CCC-eEEEEEeCCCcEEEEEcCC--CeeeEEe-------
Q 002519 689 RLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHP-NKD-DLICSCDGDGEIRYWSINN--GSCTRVF------- 757 (913)
Q Consensus 689 ~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp-~~~-~ll~sgs~Dg~I~iwdl~~--~~~~~~~------- 757 (913)
++.+-=..|.|.-||+.........+.+.. +.++.+-- ++. .+.+.++..-.|.-||... .+..+++
T Consensus 29 Ll~VDi~ag~v~r~D~~qn~v~ra~ie~p~--~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d~ 106 (310)
T KOG4499|consen 29 LLYVDIEAGEVHRYDIEQNKVYRAKIEGPP--SAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQPDR 106 (310)
T ss_pred EEEEEeccCceehhhhhhhheEEEEEecCc--ceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccCchH
Confidence 444444456677788876332222333221 22233321 222 3444555555566677432 2233331
Q ss_pred -eCCceEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCC--------CCeEEEEEcCCCCEEE-EEeCC-eEEEE
Q 002519 758 -KGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHT--------KPIDSVCWDPSGELLA-SVSED-SVRVW 826 (913)
Q Consensus 758 -~~~~~~v~~s~~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~--------~~V~sl~~spdg~~l~-s~s~d-~I~vw 826 (913)
+...+.-..+|++.+ +.+.....-.++....+....-+.+|. .--+.++|+.+.+.++ +-+.+ +|.-|
T Consensus 107 kknR~NDgkvdP~Gry-y~GtMad~~~~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~ 185 (310)
T KOG4499|consen 107 KKNRLNDGKVDPDGRY-YGGTMADFGDDLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAY 185 (310)
T ss_pred HhcccccCccCCCCce-eeeeeccccccccccccEEEEeccCCCceeeehhccCCccccccccCcEEEEEccCceEEeee
Confidence 112334557788777 444332111133333333333333332 2335688988877554 44555 78778
Q ss_pred E--CCCCC--CCceEEEeecC----CCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeC
Q 002519 827 T--VGSGS--EGECVHELSCN----GNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVST 895 (913)
Q Consensus 827 d--l~~~~--~~~~i~~~~~~----~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~sp 895 (913)
| ..++. ..+.+..++.. .-.--.+++..+|..++++-..++|..+|..+++++ ++.-....|+++||--
T Consensus 186 dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 186 DYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred ecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence 8 44442 22333333321 111223445667888888888889999999999987 5666688899999954
No 385
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.15 E-value=0.0065 Score=73.45 Aligned_cols=126 Identities=12% Similarity=0.117 Sum_probs=89.0
Q ss_pred CCeEEEEECCCCeEEEEecCCCCC-eEEEEEcC------CCCEEEEEeCCeEEEEECCCCCCCceEEE-e--ecCCCceE
Q 002519 779 ENVVSILDAETQACRLSLQGHTKP-IDSVCWDP------SGELLASVSEDSVRVWTVGSGSEGECVHE-L--SCNGNKFH 848 (913)
Q Consensus 779 dg~I~i~D~~t~~~~~~l~~h~~~-V~sl~~sp------dg~~l~s~s~d~I~vwdl~~~~~~~~i~~-~--~~~~~~i~ 848 (913)
.+.|+-.|++.|+.+..+..|... |..++-.. ....|+..+.+.+..||.|-.. .+++.. . -.....+.
T Consensus 503 ~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~-~k~v~~~~k~Y~~~~~Fs 581 (794)
T PF08553_consen 503 PNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSG-NKLVDSQSKQYSSKNNFS 581 (794)
T ss_pred CCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCC-CceeeccccccccCCCce
Confidence 578999999999999999987654 55554321 2234555555599999998653 223211 1 12345577
Q ss_pred EEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEeCC
Q 002519 849 SCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHD 906 (913)
Q Consensus 849 ~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~Lasgs~D 906 (913)
|++-+.+| +|++|+.+|.|++||-...+.. .+.+-..+|.+|+.+.||++|++.+..
T Consensus 582 ~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~t 639 (794)
T PF08553_consen 582 CFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCKT 639 (794)
T ss_pred EEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecc
Confidence 77776666 6999999999999995433322 566778999999999999998776644
No 386
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.13 E-value=0.1 Score=55.03 Aligned_cols=191 Identities=12% Similarity=0.125 Sum_probs=121.7
Q ss_pred eecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccC-CCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Q 002519 629 VRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEH-SSLITDVRFSPSMPRLATSSFDKTVRVWDADNP 707 (913)
Q Consensus 629 l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h-~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~ 707 (913)
+.+-+..|.++.|+|+.+.|++......-.||=..+|..++++.-. -..-..|.|..++.++++--.++.+.++.++..
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence 4555666999999999999999888888888877889988887531 223456777777777777777899998888764
Q ss_pred CceeE---------EeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCe-ee------------EEeeCCceEEE
Q 002519 708 GYSLR---------TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS-CT------------RVFKGGTAQMR 765 (913)
Q Consensus 708 ~~~~~---------~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~-~~------------~~~~~~~~~v~ 765 (913)
...+. .....+.....++|.|.+..++ .+-+..-+.||.+.... .. ..+-..+..+.
T Consensus 161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~-~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~ 239 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLF-VAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLE 239 (316)
T ss_pred ccEEeccceEEeccccCCCCcCceeeecCCCCceEE-EEEccCCcEEEEEecCCcccccccccCcccccceEeeccccce
Confidence 32221 1112256678899999988777 55556667777665432 11 01223455677
Q ss_pred EecCCCEEEEEEc-CCeEEEEECCCCeEEEEecCCC---------CCeEEEEEcCCCCEEEEEeCC
Q 002519 766 FQPHLGRYLAAAA-ENVVSILDAETQACRLSLQGHT---------KPIDSVCWDPSGELLASVSED 821 (913)
Q Consensus 766 ~s~~~~~ll~~~~-dg~I~i~D~~t~~~~~~l~~h~---------~~V~sl~~spdg~~l~s~s~d 821 (913)
|.+..+.+++-+. ++.+...|.... .+..+.-+. .....|+..++|.+.+++-.+
T Consensus 240 ~~~~~~~LLVLS~ESr~l~Evd~~G~-~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYIvSEPn 304 (316)
T COG3204 240 FNAITNSLLVLSDESRRLLEVDLSGE-VIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYIVSEPN 304 (316)
T ss_pred ecCCCCcEEEEecCCceEEEEecCCC-eeeeEEeccCCCCCcccCCCcceeEECCCCCEEEEecCC
Confidence 7777776666665 455555665543 232222111 124567777777755544433
No 387
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.10 E-value=0.0013 Score=46.00 Aligned_cols=38 Identities=32% Similarity=0.543 Sum_probs=34.3
Q ss_pred eeeeEeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEE
Q 002519 624 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWH 661 (913)
Q Consensus 624 ~~~~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd 661 (913)
+.+..+..|...|.+++|.+++.++++++.|+.|++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 45667788999999999999999999999999999996
No 388
>PHA02713 hypothetical protein; Provisional
Probab=97.06 E-value=0.038 Score=66.06 Aligned_cols=217 Identities=9% Similarity=0.071 Sum_probs=106.7
Q ss_pred cEEEEECCCCcee--eEeccCCCCeEEEEECCCCCEEEEEeCC------CeEEEEEcCCCCce-eEEeccCCCCeEEEEE
Q 002519 656 KAVLWHTDTLKSK--TNLEEHSSLITDVRFSPSMPRLATSSFD------KTVRVWDADNPGYS-LRTFMGHSASVMSLDF 726 (913)
Q Consensus 656 ~V~vwd~~~~~~~--~~l~~h~~~V~~l~fspdg~~Lasgs~D------g~V~Iwdl~~~~~~-~~~~~~h~~~V~sl~f 726 (913)
.+..||..+.+-. ..+...... .+++. -++..++.|+.+ ..|..||..+.... +..+....... +++.
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~-~~~a~-l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~-~~~~ 349 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIIN-YASAI-VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRF-SLAV 349 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccc-eEEEE-ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhce-eEEE
Confidence 5677887654322 222211111 12222 256677777754 34778888763221 11111111111 2222
Q ss_pred cCCCCeEEEEEeCCC-----cEEEEEcCCCeeeEE--eeCCceEE-EEecCCCEEEEEEcC-------------------
Q 002519 727 HPNKDDLICSCDGDG-----EIRYWSINNGSCTRV--FKGGTAQM-RFQPHLGRYLAAAAE------------------- 779 (913)
Q Consensus 727 sp~~~~ll~sgs~Dg-----~I~iwdl~~~~~~~~--~~~~~~~v-~~s~~~~~ll~~~~d------------------- 779 (913)
. ++.+++.|+.++ .|.+||..+.+.... +....... ....++..+++|+.+
T Consensus 350 ~--~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~ 427 (557)
T PHA02713 350 I--DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEED 427 (557)
T ss_pred E--CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEECCEEEEEeCCCccccccccccccccccccc
Confidence 2 345666777654 488899887654332 22111111 122344555555543
Q ss_pred ----CeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-------eEEEEECCCCCCCceEEEeecCCCceE
Q 002519 780 ----NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-------SVRVWTVGSGSEGECVHELSCNGNKFH 848 (913)
Q Consensus 780 ----g~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-------~I~vwdl~~~~~~~~i~~~~~~~~~i~ 848 (913)
..|..||.++.+-...-.-........+..-++++.+.|+.+ .+..||..+.+....+..+........
T Consensus 428 ~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~ 507 (557)
T PHA02713 428 THSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALH 507 (557)
T ss_pred ccccceEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccce
Confidence 247788887764332111111111111222356666666532 367888876223344444433232222
Q ss_pred EEEEeCCCCEEEEEEcCC--eEEEEECCCCcEE
Q 002519 849 SCVFHPTYPSLLVIGCYQ--SLELWNMSENKTM 879 (913)
Q Consensus 849 ~l~~sp~g~~l~s~s~dg--~I~iwd~~~~~~~ 879 (913)
.+++ +++..++|+.++ .+..||..+.+-.
T Consensus 508 ~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~W~ 538 (557)
T PHA02713 508 TILH--DNTIMMLHCYESYMLQDTFNVYTYEWN 538 (557)
T ss_pred eEEE--CCEEEEEeeecceeehhhcCccccccc
Confidence 3333 677888888887 7888888877654
No 389
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.04 E-value=0.022 Score=51.59 Aligned_cols=101 Identities=20% Similarity=0.228 Sum_probs=67.7
Q ss_pred EEEEEEec---CC-CEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCcee
Q 002519 636 VICCHFSS---DG-KLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSL 711 (913)
Q Consensus 636 V~~l~fsp---dg-~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~ 711 (913)
|+++++.. || +.|++|+.|..|+||+-+ +.+..+..+ +.|++++-... .+++.+-.+|+|-+|+-.. .+
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e~-~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~---Rl 74 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITET-DKVTSLCSLGG-GRFAYALANGTVGVYDRSQ---RL 74 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEecc-cceEEEEEcCC-CEEEEEecCCEEEEEeCcc---ee
Confidence 66777655 33 589999999999999854 556666544 45777776655 6799999999999998653 22
Q ss_pred EEeccCCCCeEEEEEcC---CCCeEEEEEeCCCcEE
Q 002519 712 RTFMGHSASVMSLDFHP---NKDDLICSCDGDGEIR 744 (913)
Q Consensus 712 ~~~~~h~~~V~sl~fsp---~~~~ll~sgs~Dg~I~ 744 (913)
...+ .+..++++.+.. +|..-|++|-.+|.|-
T Consensus 75 WRiK-SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 75 WRIK-SKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eeec-cCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 2222 223366665543 4444556887788764
No 390
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.00 E-value=0.0018 Score=45.28 Aligned_cols=39 Identities=36% Similarity=0.537 Sum_probs=34.5
Q ss_pred CceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEE
Q 002519 665 LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 703 (913)
Q Consensus 665 ~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwd 703 (913)
++.+..+..|...|.++.|.+++..+++++.|+.|++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 345667778899999999999999999999999999996
No 391
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.99 E-value=0.089 Score=53.40 Aligned_cols=133 Identities=14% Similarity=0.169 Sum_probs=90.5
Q ss_pred CCCeEEEEECCCCCEEEEEeCC---------CeEEEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEE
Q 002519 675 SSLITDVRFSPSMPRLATSSFD---------KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRY 745 (913)
Q Consensus 675 ~~~V~~l~fspdg~~Lasgs~D---------g~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~i 745 (913)
....++-..+|+|++++-.-.| |.++.|-... .+..+...-.--+.|+|+.+.+.+.++-+.+-+|.-
T Consensus 108 knR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h---~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a 184 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGH---QVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDA 184 (310)
T ss_pred hcccccCccCCCCceeeeeeccccccccccccEEEEeccCC---CceeeehhccCCccccccccCcEEEEEccCceEEee
Confidence 3445666778999985433222 4566665532 222233333444568999888888888888889988
Q ss_pred EE--cCCCee-----eEEeeC-------CceEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcC
Q 002519 746 WS--INNGSC-----TRVFKG-------GTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDP 810 (913)
Q Consensus 746 wd--l~~~~~-----~~~~~~-------~~~~v~~s~~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~sp 810 (913)
|| ..++.. +..++. ....+++..++..++++-..++|..+|..+++.+.+++-....|+|+||--
T Consensus 185 ~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 185 YDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred eecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence 88 555432 222221 122355666777888888889999999999999999998899999999974
No 392
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.99 E-value=0.044 Score=49.60 Aligned_cols=100 Identities=16% Similarity=0.176 Sum_probs=66.0
Q ss_pred eEEEEEcC---CCC-EEEEEeCC-eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCc
Q 002519 803 IDSVCWDP---SGE-LLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK 877 (913)
Q Consensus 803 V~sl~~sp---dg~-~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~ 877 (913)
|+++++.. +|. .|++|++| .||||+-. ..+.++.. ...+..++-... ..|+.+..+|+|-+|+-....
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~-----e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~Rl 74 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD-----EIVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDRSQRL 74 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC-----cEEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeCccee
Confidence 55666554 443 88999999 99999853 55666655 455666665555 569999999999999863332
Q ss_pred EEEEcccCCCeEEEEEeC-CC---CEEEEEeCCCcEEE
Q 002519 878 TMTLTAHEGLIAALAVST-ET---GYVASASHDKFVKL 911 (913)
Q Consensus 878 ~~~~~~h~~~V~~l~~sp-dg---~~Lasgs~DG~I~I 911 (913)
- .+ .....+.++++.. ++ .-|++|-.+|.|-+
T Consensus 75 W-Ri-KSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 75 W-RI-KSKNQVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred e-ee-ccCCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 2 22 2333366665543 32 25888888998854
No 393
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.93 E-value=0.038 Score=65.96 Aligned_cols=229 Identities=14% Similarity=0.114 Sum_probs=118.6
Q ss_pred cCCCEEEEEeCC------CcEEEEECCCCceeeEecc-CCCCeEEEEECCCCCEEEEEeCC------CeEEEEEcCCCCc
Q 002519 643 SDGKLLATGGHD------KKAVLWHTDTLKSKTNLEE-HSSLITDVRFSPSMPRLATSSFD------KTVRVWDADNPGY 709 (913)
Q Consensus 643 pdg~~Lasgs~D------g~V~vwd~~~~~~~~~l~~-h~~~V~~l~fspdg~~Lasgs~D------g~V~Iwdl~~~~~ 709 (913)
..+.+++.||.+ .+|..||..+..-.....- ....-.++++. ++.+.++|+.| .++..||......
T Consensus 283 ~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W 361 (571)
T KOG4441|consen 283 VSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQW 361 (571)
T ss_pred CCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCce
Confidence 345577777766 3677888876532222111 22223334443 45678888888 3577888876432
Q ss_pred eeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCc-----EEEEEcCCCeeeEEe--eCCceEEEE-ecCCCEEEEEEcC--
Q 002519 710 SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGE-----IRYWSINNGSCTRVF--KGGTAQMRF-QPHLGRYLAAAAE-- 779 (913)
Q Consensus 710 ~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~-----I~iwdl~~~~~~~~~--~~~~~~v~~-s~~~~~ll~~~~d-- 779 (913)
.. +..-...-..+....-++.+.++|+.||. |..||.++.+....- ......... .-++..+++|+.+
T Consensus 362 ~~--~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~ 439 (571)
T KOG4441|consen 362 TP--VAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGS 439 (571)
T ss_pred ec--cCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCC
Confidence 11 11111111112222224567788888864 778888776543322 222222333 3344455555543
Q ss_pred ----CeEEEEECCCCeEEEE--ecCCCCCeEEEEEcCCCCEEEEEeCC------eEEEEECCCCCCCceEEEeecCCCce
Q 002519 780 ----NVVSILDAETQACRLS--LQGHTKPIDSVCWDPSGELLASVSED------SVRVWTVGSGSEGECVHELSCNGNKF 847 (913)
Q Consensus 780 ----g~I~i~D~~t~~~~~~--l~~h~~~V~sl~~spdg~~l~s~s~d------~I~vwdl~~~~~~~~i~~~~~~~~~i 847 (913)
..+..||..+.+.... +..-.... .++.. ++.+.+.|+.+ +|..||..+. ....+.........+
T Consensus 440 ~~~l~sve~YDP~t~~W~~~~~M~~~R~~~-g~a~~-~~~iYvvGG~~~~~~~~~VE~ydp~~~-~W~~v~~m~~~rs~~ 516 (571)
T KOG4441|consen 440 SNCLNSVECYDPETNTWTLIAPMNTRRSGF-GVAVL-NGKIYVVGGFDGTSALSSVERYDPETN-QWTMVAPMTSPRSAV 516 (571)
T ss_pred ccccceEEEEcCCCCceeecCCcccccccc-eEEEE-CCEEEEECCccCCCccceEEEEcCCCC-ceeEcccCccccccc
Confidence 3678899888754332 22111222 23322 56666666644 4788888764 222222222222222
Q ss_pred EEEEEeCCCCEEEEEEcCC-----eEEEEECCCCcEE
Q 002519 848 HSCVFHPTYPSLLVIGCYQ-----SLELWNMSENKTM 879 (913)
Q Consensus 848 ~~l~~sp~g~~l~s~s~dg-----~I~iwd~~~~~~~ 879 (913)
.. ..-++...++|+.|+ +|..||..+.+-.
T Consensus 517 g~--~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W~ 551 (571)
T KOG4441|consen 517 GV--VVLGGKLYAVGGFDGNNNLNTVECYDPETDTWT 551 (571)
T ss_pred cE--EEECCEEEEEecccCccccceeEEcCCCCCcee
Confidence 22 223566677777775 7888887776644
No 394
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.92 E-value=0.016 Score=65.02 Aligned_cols=141 Identities=10% Similarity=0.087 Sum_probs=97.3
Q ss_pred CCCEE-EEEeCCCeEEEEEcCCCCceeEEeccCCCCeEEEEEcCCCCe-------EEEEEeCCCcEEEEEcCCCee--eE
Q 002519 686 SMPRL-ATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDD-------LICSCDGDGEIRYWSINNGSC--TR 755 (913)
Q Consensus 686 dg~~L-asgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~-------ll~sgs~Dg~I~iwdl~~~~~--~~ 755 (913)
+.++| .++..-..|+-.|++. ++.+..++-+.. |.-+.+.|+.+. -| .|-.|..|+-||.+-... +.
T Consensus 344 dsnlil~~~~~~~~l~klDIE~-GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~Tl-vGLs~n~vfriDpRv~~~~kl~ 420 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIER-GKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTL-VGLSDNSVFRIDPRVQGKNKLA 420 (644)
T ss_pred ccceEeeCCCCcCcceeeeccc-ceeeeEeeccCC-cceeeccCCcchhcccccccE-EeecCCceEEecccccCcceee
Confidence 33444 3444456688888887 788888887766 777778776432 22 467789999999884322 11
Q ss_pred E-----eeCCceEEEE-ecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECC
Q 002519 756 V-----FKGGTAQMRF-QPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVG 829 (913)
Q Consensus 756 ~-----~~~~~~~v~~-s~~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d~I~vwdl~ 829 (913)
. +.....--|+ ....+++++++.+|.|++||.........+.+...+|..|..+.+|++|++.+...+.+.++.
T Consensus 421 ~~q~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~tyLlLi~t~ 500 (644)
T KOG2395|consen 421 VVQSKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCKTYLLLIDTL 500 (644)
T ss_pred eeeccccccccccceeeecCCceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEecccEEEEEEEe
Confidence 1 1222221222 234589999999999999998444555567788899999999999999998888876666653
No 395
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.90 E-value=0.041 Score=65.72 Aligned_cols=216 Identities=14% Similarity=0.079 Sum_probs=113.9
Q ss_pred CCEEEEEeCC------CeEEEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCC------CcEEEEEcCCCeee
Q 002519 687 MPRLATSSFD------KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD------GEIRYWSINNGSCT 754 (913)
Q Consensus 687 g~~Lasgs~D------g~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~D------g~I~iwdl~~~~~~ 754 (913)
+.+++.|+.+ ..|..||..+.......-......-.++++.. +.++++|+.| .++.+||.++.+..
T Consensus 285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~--~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~ 362 (571)
T KOG4441|consen 285 GKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLN--GKLYVVGGYDSGSDRLSSVERYDPRTNQWT 362 (571)
T ss_pred CeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEEC--CEEEEEccccCCCcccceEEEecCCCCcee
Confidence 4455666655 35778888764222211112333344555553 4577788888 45788888877644
Q ss_pred EE--eeCCceEEEE-ecCCCEEEEEEcCC-----eEEEEECCCCeEEEEecCCCCCeEEE-EEcCCCCEEEEEeCC----
Q 002519 755 RV--FKGGTAQMRF-QPHLGRYLAAAAEN-----VVSILDAETQACRLSLQGHTKPIDSV-CWDPSGELLASVSED---- 821 (913)
Q Consensus 755 ~~--~~~~~~~v~~-s~~~~~ll~~~~dg-----~I~i~D~~t~~~~~~l~~h~~~V~sl-~~spdg~~l~s~s~d---- 821 (913)
.. +......+.. ..++..+++|+.|| .|..||.++.+....-.-.. ..... ...-+|++.++|+.+
T Consensus 363 ~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~-~r~~~gv~~~~g~iYi~GG~~~~~~ 441 (571)
T KOG4441|consen 363 PVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLT-RRSGHGVAVLGGKLYIIGGGDGSSN 441 (571)
T ss_pred ccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCc-ceeeeEEEEECCEEEEEcCcCCCcc
Confidence 32 1122222222 33445566677665 68888888764332211111 11111 122257777776643
Q ss_pred ---eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEEEEcCC-----eEEEEECCCCcEEEEcccCCCeEEEEE
Q 002519 822 ---SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ-----SLELWNMSENKTMTLTAHEGLIAALAV 893 (913)
Q Consensus 822 ---~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg-----~I~iwd~~~~~~~~~~~h~~~V~~l~~ 893 (913)
++..||..+. ....+..+........ ...-++...++||.|+ +|..||..+.+...+..-......+.+
T Consensus 442 ~l~sve~YDP~t~-~W~~~~~M~~~R~~~g--~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~ 518 (571)
T KOG4441|consen 442 CLNSVECYDPETN-TWTLIAPMNTRRSGFG--VAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGV 518 (571)
T ss_pred ccceEEEEcCCCC-ceeecCCcccccccce--EEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccE
Confidence 5788888764 1222222222122222 2223566677777665 588899988877655433322222222
Q ss_pred -eCCCCEEEEEeCCCc
Q 002519 894 -STETGYVASASHDKF 908 (913)
Q Consensus 894 -spdg~~Lasgs~DG~ 908 (913)
.-+++..+.|+.||.
T Consensus 519 ~~~~~~ly~vGG~~~~ 534 (571)
T KOG4441|consen 519 VVLGGKLYAVGGFDGN 534 (571)
T ss_pred EEECCEEEEEecccCc
Confidence 235567777887764
No 396
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.79 E-value=0.35 Score=51.64 Aligned_cols=184 Identities=14% Similarity=0.113 Sum_probs=100.2
Q ss_pred CeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEE--eeCCceEEEEecCCCEEEEEEcCCeEEEE-ECCCCeE-EEE
Q 002519 720 SVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV--FKGGTAQMRFQPHLGRYLAAAAENVVSIL-DAETQAC-RLS 795 (913)
Q Consensus 720 ~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~--~~~~~~~v~~s~~~~~ll~~~~dg~I~i~-D~~t~~~-~~~ 795 (913)
.+.+.++++++..+.+....++.-.+|-...+..... .........|++++...++...+...+++ +...+.. ...
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~ 104 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPVE 104 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeeccCCccccccccCCCCEEEEEcCCCceEEEEecCCCcceeEE
Confidence 6888999999988776663344444444333332222 22345667789995555555555555555 3333322 122
Q ss_pred ecC--CCCCeEEEEEcCCCCEEEEEe----CCeEEEEECCCCCCC------ceEEEeecCCCceEEEEEeCCCCEEEEEE
Q 002519 796 LQG--HTKPIDSVCWDPSGELLASVS----EDSVRVWTVGSGSEG------ECVHELSCNGNKFHSCVFHPTYPSLLVIG 863 (913)
Q Consensus 796 l~~--h~~~V~sl~~spdg~~l~s~s----~d~I~vwdl~~~~~~------~~i~~~~~~~~~i~~l~~sp~g~~l~s~s 863 (913)
+.. ....|..+.++|||..++... ...|.|--+...... ..+.........+..+.|.+++.+++.+.
T Consensus 105 v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~ 184 (253)
T PF10647_consen 105 VDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGR 184 (253)
T ss_pred ecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEEEeC
Confidence 221 122899999999999777665 236766665433222 11122223356788999999998777776
Q ss_pred cCCe-EEE-EECCCCcEEEEcccCCCeEEEEEeCCCCEEEEE
Q 002519 864 CYQS-LEL-WNMSENKTMTLTAHEGLIAALAVSTETGYVASA 903 (913)
Q Consensus 864 ~dg~-I~i-wd~~~~~~~~~~~h~~~V~~l~~spdg~~Lasg 903 (913)
..+. +.. +....+....+..-...+..++...+...++..
T Consensus 185 ~~~~~~~~~v~~dG~~~~~l~~~~~~~~v~a~~~~~~~~~~t 226 (253)
T PF10647_consen 185 SAGGPVVRLVSVDGGPSTPLPSVNLGVPVVAVAASPSTVYVT 226 (253)
T ss_pred CCCCceeEEEEccCCcccccCCCCCCcceEEeeCCCcEEEEE
Confidence 5542 333 444444333332323333333333333344333
No 397
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=96.78 E-value=0.71 Score=52.27 Aligned_cols=102 Identities=19% Similarity=0.209 Sum_probs=59.1
Q ss_pred CCEEEEEEecCCCEEEEEe-----------CCC-cEEEEECC--CCc--eeeEeccCCCCeEEEEECCCCCEEEEEeCCC
Q 002519 634 SKVICCHFSSDGKLLATGG-----------HDK-KAVLWHTD--TLK--SKTNLEEHSSLITDVRFSPSMPRLATSSFDK 697 (913)
Q Consensus 634 ~~V~~l~fspdg~~Lasgs-----------~Dg-~V~vwd~~--~~~--~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg 697 (913)
.....|+|.++|+++++.. ..+ .|.+++-. .++ ....+.......+.|+|.+++ |++++.+.
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~~ 91 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPPD 91 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCCe
Confidence 5678899999999887753 223 67777643 233 234444444556889999888 44445554
Q ss_pred eEEEEEcCCCC----c--ee-EEecc----CCCCeEEEEEcCCCCeEEEEE
Q 002519 698 TVRVWDADNPG----Y--SL-RTFMG----HSASVMSLDFHPNKDDLICSC 737 (913)
Q Consensus 698 ~V~Iwdl~~~~----~--~~-~~~~~----h~~~V~sl~fsp~~~~ll~sg 737 (913)
.+++.|.+..+ . .+ ..+.. +......++|.|||..++..+
T Consensus 92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G 142 (367)
T TIGR02604 92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG 142 (367)
T ss_pred EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence 44444554321 1 11 12222 134467899999886555333
No 398
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.74 E-value=0.12 Score=54.12 Aligned_cols=169 Identities=18% Similarity=0.188 Sum_probs=109.3
Q ss_pred cCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeCCceEEEEecCCCEEEEEEc-CC-eEEEEECCCCeEEEEecCCCC--C
Q 002519 727 HPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAA-EN-VVSILDAETQACRLSLQGHTK--P 802 (913)
Q Consensus 727 sp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~s~~~~~ll~~~~-dg-~I~i~D~~t~~~~~~l~~h~~--~ 802 (913)
..|+.+.+++.+.+|.|..- ..+......+.++|....-++... -| ...+||........++...+. .
T Consensus 44 ~~dgs~g~a~~~eaGk~v~~--------~~lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHf 115 (366)
T COG3490 44 ARDGSFGAATLSEAGKIVFA--------TALPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHF 115 (366)
T ss_pred ccCCceeEEEEccCCceeee--------eecccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCcee
Confidence 44566666666665554321 112233345667776655444333 33 467788887755544433222 1
Q ss_pred eEEEEEcCCCCEEEEEeCC------eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEEEEc------C-----
Q 002519 803 IDSVCWDPSGELLASVSED------SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGC------Y----- 865 (913)
Q Consensus 803 V~sl~~spdg~~l~s~s~d------~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~------d----- 865 (913)
.-.-+|++||.+|+..-.| .|-|||.+. ....+.++..++-.-+.+.|.+||+.++++.. |
T Consensus 116 yGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~--~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~ 193 (366)
T COG3490 116 YGHGVFSPDGRLLYATENDFDPNRGVIGVYDARE--GFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTE 193 (366)
T ss_pred ecccccCCCCcEEEeecCCCCCCCceEEEEeccc--ccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccc
Confidence 2234799999999987655 589999983 45778888888888999999999999888754 1
Q ss_pred -------CeEEEEECCCCcEE---EEc--ccCCCeEEEEEeCCCCEEEEEeC
Q 002519 866 -------QSLELWNMSENKTM---TLT--AHEGLIAALAVSTETGYVASASH 905 (913)
Q Consensus 866 -------g~I~iwd~~~~~~~---~~~--~h~~~V~~l~~spdg~~Lasgs~ 905 (913)
-++.+.|..++.++ ++. .+.-.|..++..+||..++.|-.
T Consensus 194 lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy 245 (366)
T COG3490 194 LNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQY 245 (366)
T ss_pred cchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEe
Confidence 14555666666655 333 35567899999999987776644
No 399
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=96.74 E-value=1.5 Score=49.91 Aligned_cols=222 Identities=11% Similarity=0.144 Sum_probs=119.7
Q ss_pred CCEEEEEeCCCeEEEEEcCCCCce---eEEeccCCCCeEEEEEcC---C-CCeEEEEEeCCCcEEEEEcCCCe-------
Q 002519 687 MPRLATSSFDKTVRVWDADNPGYS---LRTFMGHSASVMSLDFHP---N-KDDLICSCDGDGEIRYWSINNGS------- 752 (913)
Q Consensus 687 g~~Lasgs~Dg~V~Iwdl~~~~~~---~~~~~~h~~~V~sl~fsp---~-~~~ll~sgs~Dg~I~iwdl~~~~------- 752 (913)
...|++||..|.+|||+....+.. +..-..-..+|..|..-. . ....| +.-.-..+.||.+....
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~L-aVLhP~kl~vY~v~~~~g~~~~g~ 115 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQL-AVLHPRKLSVYSVSLVDGTVEHGN 115 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceE-EEecCCEEEEEEEEecCCCcccCc
Confidence 458999999999999998653311 222233456777776532 2 22233 33446777788773211
Q ss_pred ---eeEE----eeCCceEEEEecCC-----CEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeC
Q 002519 753 ---CTRV----FKGGTAQMRFQPHL-----GRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSE 820 (913)
Q Consensus 753 ---~~~~----~~~~~~~v~~s~~~-----~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~ 820 (913)
.... +......+++-+-+ ..+.+=+.||.+.+|+-+.....+.+.+ .---..++|.+.-+.|++++.
T Consensus 116 ~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfvt~ss 194 (418)
T PF14727_consen 116 QYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFVTASS 194 (418)
T ss_pred EEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEEEecC
Confidence 1111 12222334443333 4566667799999999887665555544 112234578888888888888
Q ss_pred C-eEEEEECCC--------------------CCCCceEEEeecCCCceEEE---EEeCCCCEEEEEEcCCeEEEEECCCC
Q 002519 821 D-SVRVWTVGS--------------------GSEGECVHELSCNGNKFHSC---VFHPTYPSLLVIGCYQSLELWNMSEN 876 (913)
Q Consensus 821 d-~I~vwdl~~--------------------~~~~~~i~~~~~~~~~i~~l---~~sp~g~~l~s~s~dg~I~iwd~~~~ 876 (913)
+ .|..|.... ++....-..+.. +..+..+ .++.....|++-+ ...+.+.+.. |
T Consensus 195 s~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nl-GE~~l~i~v~~~~~~~~~IvvLg-er~Lf~l~~~-G 271 (418)
T PF14727_consen 195 SWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNL-GEQALDIQVVRFSSSESDIVVLG-ERSLFCLKDN-G 271 (418)
T ss_pred ceeEEEecHHHhhhccccccccccccccccccccccceeEEEC-CceeEEEEEEEcCCCCceEEEEe-cceEEEEcCC-C
Confidence 7 888887521 111112222222 2223333 3333333344433 4456666653 4
Q ss_pred cEEEEcccCCCeEEEE-E----eCCC---CEEEEEeCCCcEEEeC
Q 002519 877 KTMTLTAHEGLIAALA-V----STET---GYVASASHDKFVKLWK 913 (913)
Q Consensus 877 ~~~~~~~h~~~V~~l~-~----spdg---~~Lasgs~DG~I~IWd 913 (913)
.+......+....|++ | ..++ ..++.+++++.+.||+
T Consensus 272 ~l~~~krLd~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~ 316 (418)
T PF14727_consen 272 SLRFQKRLDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYE 316 (418)
T ss_pred eEEEEEecCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEe
Confidence 4443333333333332 1 1122 2488899999999884
No 400
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.74 E-value=0.56 Score=57.70 Aligned_cols=112 Identities=19% Similarity=0.218 Sum_probs=69.6
Q ss_pred CCEEEEEeCCCcEEEEECCCCceeeEeccCCCC--------eEEEEECC----------------CCCEEEEEeCCCeEE
Q 002519 645 GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSL--------ITDVRFSP----------------SMPRLATSSFDKTVR 700 (913)
Q Consensus 645 g~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~--------V~~l~fsp----------------dg~~Lasgs~Dg~V~ 700 (913)
+..|++++.++.|+-.|..+|+.+-.+...... +..+.+.. ++.+|+.++.|+.|.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 457777778888999999998888776543211 22233321 345888899999999
Q ss_pred EEEcCCCCceeEEeccCCCCeE-------------EEEEcC--CCCeEEEEEeC----------CCcEEEEEcCCCeeeE
Q 002519 701 VWDADNPGYSLRTFMGHSASVM-------------SLDFHP--NKDDLICSCDG----------DGEIRYWSINNGSCTR 755 (913)
Q Consensus 701 Iwdl~~~~~~~~~~~~h~~~V~-------------sl~fsp--~~~~ll~sgs~----------Dg~I~iwdl~~~~~~~ 755 (913)
-.|.++ ++.+..|. ..+.|. .+.-.| .++.+| +|+. +|.|+-+|+++++.+.
T Consensus 274 ALDA~T-Gk~~W~fg-~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VI-vG~~v~d~~~~~~~~G~I~A~Da~TGkl~W 350 (764)
T TIGR03074 274 ALDADT-GKLCEDFG-NNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVV-IGGRVADNYSTDEPSGVIRAFDVNTGALVW 350 (764)
T ss_pred EEECCC-CCEEEEec-CCCceeeecccCcCCCcccccccCCEEECCEEE-EEecccccccccCCCcEEEEEECCCCcEee
Confidence 999988 55444432 111110 011111 123344 4532 6889999999999988
Q ss_pred EeeC
Q 002519 756 VFKG 759 (913)
Q Consensus 756 ~~~~ 759 (913)
.+..
T Consensus 351 ~~~~ 354 (764)
T TIGR03074 351 AWDP 354 (764)
T ss_pred EEec
Confidence 7753
No 401
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.73 E-value=0.0017 Score=65.60 Aligned_cols=139 Identities=14% Similarity=0.063 Sum_probs=81.2
Q ss_pred EEEEEeCCCeEEEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeee-EEeeCC---c-eE
Q 002519 689 RLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT-RVFKGG---T-AQ 763 (913)
Q Consensus 689 ~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~-~~~~~~---~-~~ 763 (913)
.|...+.||.|+-++++.-....+...-|.....-+.+. . -+++|..+|.|++|+..-.... ..+... + ..
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~~~v~~~~---~-~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~ 107 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHKESCRSERFIDEGQRVVTAS---A-KLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLG 107 (238)
T ss_pred hhccccCCcccccchhhhhhhhhhhhhhhhcceeecccC---c-eEEeecccceEEEecCCccchHHHhhhcccccceec
Confidence 345556788888888765222222222222221112222 2 3458888999999988732111 111111 1 11
Q ss_pred EEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCC-CCeEEEEEcCCCCEEEEE--eCC-eEEEEECCCC
Q 002519 764 MRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHT-KPIDSVCWDPSGELLASV--SED-SVRVWTVGSG 831 (913)
Q Consensus 764 v~~s~~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~-~~V~sl~~spdg~~l~s~--s~d-~I~vwdl~~~ 831 (913)
+....++.+..+++.++.|+.|.+.-.+.+-....|. .++..+..+..+++|++. +.| .++.|++...
T Consensus 108 Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~ 179 (238)
T KOG2444|consen 108 IPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKI 179 (238)
T ss_pred cccccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhhh
Confidence 2222333467778889999999998888777776676 556666666666666666 666 7778877543
No 402
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=96.67 E-value=1.1 Score=47.28 Aligned_cols=252 Identities=12% Similarity=0.039 Sum_probs=136.5
Q ss_pred CCCcccccccCccceeeeEeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCC---ceeeEeccCCCCeEEEEECCC
Q 002519 610 AGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL---KSKTNLEEHSSLITDVRFSPS 686 (913)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~---~~~~~l~~h~~~V~~l~fspd 686 (913)
.+.++.|+...-+-.++..+... +--+|+.. .|+++.++..|.-+.+.|+.+. .....+......-..++.+
T Consensus 106 sGL~IvDIS~P~sP~~~~~lnt~-gyaygv~v--sGn~aYVadlddgfLivdvsdpssP~lagrya~~~~d~~~v~IS-- 180 (370)
T COG5276 106 SGLRIVDISTPDSPTLIGFLNTD-GYAYGVYV--SGNYAYVADLDDGFLIVDVSDPSSPQLAGRYALPGGDTHDVAIS-- 180 (370)
T ss_pred CceEEEeccCCCCcceeccccCC-ceEEEEEe--cCCEEEEeeccCcEEEEECCCCCCceeeeeeccCCCCceeEEEe--
Confidence 45566666665455555554431 33444444 5778888886777788888743 3334444455555667775
Q ss_pred CCEEEEEeCCCeEEEEEcCCCCceeEEeccCC-CCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeC----Cc
Q 002519 687 MPRLATSSFDKTVRVWDADNPGYSLRTFMGHS-ASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG----GT 761 (913)
Q Consensus 687 g~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~-~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~----~~ 761 (913)
|++-+.++.|+-+.|-|+.++..++..-.-.. ..+.++..+++. .++ ...+-.+.+-|..+.+....+.. ..
T Consensus 181 Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr-~y~--vvy~egvlivd~s~~ssp~~~gsyet~~p 257 (370)
T COG5276 181 GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNR-AYL--VVYDEGVLIVDVSGPSSPTVFGSYETSNP 257 (370)
T ss_pred cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCe-eEE--EEcccceEEEecCCCCCceEeeccccCCc
Confidence 66778888899999999987655443322222 267777777652 233 33355677888877664444321 11
Q ss_pred eEE-EEecCCCEEEEEEcCCeEEEEECCCCeEEE---EecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCCceE
Q 002519 762 AQM-RFQPHLGRYLAAAAENVVSILDAETQACRL---SLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECV 837 (913)
Q Consensus 762 ~~v-~~s~~~~~ll~~~~dg~I~i~D~~t~~~~~---~l~~h~~~V~sl~~spdg~~l~s~s~d~I~vwdl~~~~~~~~i 837 (913)
.++ .+.-.+++..+...+..+-+.|+.+....+ .+......-..+.. .+.++..+..+...+.|...... .
T Consensus 258 ~~~s~v~Vs~~~~Yvadga~gl~~idisnp~spfl~ss~~t~g~~a~gi~a--y~~y~yiadkn~g~vV~~s~~s~---m 332 (370)
T COG5276 258 VSISTVPVSGEYAYVADGAKGLPIIDISNPPSPFLSSSLDTAGYQAAGIRA--YGNYNYIADKNTGAVVDASPPSM---M 332 (370)
T ss_pred ccccceecccceeeeeccccCceeEeccCCCCCchhccccCCCccccceEE--ecCeeEeccCCceEEEeCCChhh---c
Confidence 111 234444555555566666666665532111 11111111122222 24455555555555555543211 1
Q ss_pred EEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 002519 838 HELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMS 874 (913)
Q Consensus 838 ~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~ 874 (913)
....+....+.+|+.+-+...+.....++.+.||+..
T Consensus 333 ~~~~g~~ti~~s~~v~~~~q~~y~~d~~~gl~i~~~~ 369 (370)
T COG5276 333 DKRPGRPTIGQSCDVSVDTQIIYSTDYNGGLSIIEYL 369 (370)
T ss_pred ccccCcceEeeecceEEEeeEEEEeecCCCEEEEEec
Confidence 1111222334555555556677778888888888753
No 403
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.65 E-value=0.25 Score=52.18 Aligned_cols=200 Identities=14% Similarity=0.155 Sum_probs=103.7
Q ss_pred eccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCceeEEecc-CCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcC
Q 002519 671 LEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMG-HSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN 749 (913)
Q Consensus 671 l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~-h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~ 749 (913)
+.+-...|.++.|+|+.+.|++......-.||=.. .+..++++.- .-.....|.|..++. ++++--.++.+.++.+.
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~-~GdlirtiPL~g~~DpE~Ieyig~n~-fvi~dER~~~l~~~~vd 158 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTK-EGDLIRTIPLTGFSDPETIEYIGGNQ-FVIVDERDRALYLFTVD 158 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEec-CCceEEEecccccCChhHeEEecCCE-EEEEehhcceEEEEEEc
Confidence 44555669999999999999888876665555443 3666666541 122234567765543 44455556777766665
Q ss_pred CCeeeEEeeCCceEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEEC
Q 002519 750 NGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTV 828 (913)
Q Consensus 750 ~~~~~~~~~~~~~~v~~s~~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl 828 (913)
....+..++.. .| .+............++|+|....|+.+-+. -+.||.+
T Consensus 159 ~~t~~~~~~~~--------------------~i---------~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~ 209 (316)
T COG3204 159 ADTTVISAKVQ--------------------KI---------PLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEV 209 (316)
T ss_pred CCccEEeccce--------------------EE---------eccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEE
Confidence 44322211100 00 000111114557788888877766555554 4444444
Q ss_pred CCCCCCceEEEeecC-------CCceEEEEEeCCCCEEEEE-EcCCeEEEEECCCCcEE--EEcccCC-------CeEEE
Q 002519 829 GSGSEGECVHELSCN-------GNKFHSCVFHPTYPSLLVI-GCYQSLELWNMSENKTM--TLTAHEG-------LIAAL 891 (913)
Q Consensus 829 ~~~~~~~~i~~~~~~-------~~~i~~l~~sp~g~~l~s~-s~dg~I~iwd~~~~~~~--~~~~h~~-------~V~~l 891 (913)
........++....+ -..+..+.|++....+++- ..++.|.-.|......- .+.+... .-..|
T Consensus 210 ~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~lsL~~g~~gL~~dipqaEGi 289 (316)
T COG3204 210 TQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEVIELLSLTKGNHGLSSDIPQAEGI 289 (316)
T ss_pred ecCCcccccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCCeeeeEEeccCCCCCcccCCCccee
Confidence 322211111111111 1235667787755555444 44566666776655322 2222111 23456
Q ss_pred EEeCCCCEEE
Q 002519 892 AVSTETGYVA 901 (913)
Q Consensus 892 ~~spdg~~La 901 (913)
+...+|.+.+
T Consensus 290 amDd~g~lYI 299 (316)
T COG3204 290 AMDDDGNLYI 299 (316)
T ss_pred EECCCCCEEE
Confidence 7777776443
No 404
>PRK13684 Ycf48-like protein; Provisional
Probab=96.62 E-value=1.7 Score=48.55 Aligned_cols=267 Identities=10% Similarity=0.073 Sum_probs=131.0
Q ss_pred CCCEEEEEEecCCCEEEEEeCCCcEEEEECC-CCceeeEe----ccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Q 002519 633 TSKVICCHFSSDGKLLATGGHDKKAVLWHTD-TLKSKTNL----EEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP 707 (913)
Q Consensus 633 ~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~-~~~~~~~l----~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~ 707 (913)
...+++|+|..+.+-+|+|. +|.| |... .++.-... ......+.+|.|..+ ..+++ +..+. ||..++.
T Consensus 45 ~~~l~~v~F~d~~~g~avG~-~G~i--l~T~DgG~tW~~~~~~~~~~~~~l~~v~~~~~-~~~~~-G~~g~--i~~S~Dg 117 (334)
T PRK13684 45 EANLLDIAFTDPNHGWLVGS-NRTL--LETNDGGETWEERSLDLPEENFRLISISFKGD-EGWIV-GQPSL--LLHTTDG 117 (334)
T ss_pred CCceEEEEEeCCCcEEEEEC-CCEE--EEEcCCCCCceECccCCcccccceeeeEEcCC-cEEEe-CCCce--EEEECCC
Confidence 55799999986666677664 4433 3332 22222211 112334778888643 34444 44553 3444443
Q ss_pred CceeEEec---cCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEe----eCCceEEEEecCCCEEEEEEcCC
Q 002519 708 GYSLRTFM---GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF----KGGTAQMRFQPHLGRYLAAAAEN 780 (913)
Q Consensus 708 ~~~~~~~~---~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~----~~~~~~v~~s~~~~~ll~~~~dg 780 (913)
++.-..+. ........+..... ..++ .++..|.|..=+ +.++.-..+ .+....+.+.+++ .+++.+..|
T Consensus 118 G~tW~~~~~~~~~~~~~~~i~~~~~-~~~~-~~g~~G~i~~S~-DgG~tW~~~~~~~~g~~~~i~~~~~g-~~v~~g~~G 193 (334)
T PRK13684 118 GKNWTRIPLSEKLPGSPYLITALGP-GTAE-MATNVGAIYRTT-DGGKNWEALVEDAAGVVRNLRRSPDG-KYVAVSSRG 193 (334)
T ss_pred CCCCeEccCCcCCCCCceEEEEECC-Ccce-eeeccceEEEEC-CCCCCceeCcCCCcceEEEEEECCCC-eEEEEeCCc
Confidence 43332221 01111222222222 2233 233344443222 122221111 2334566777764 555666666
Q ss_pred eEEEE-ECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCCceEEEe-ecCCCceEEEEEeCCCCE
Q 002519 781 VVSIL-DAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHEL-SCNGNKFHSCVFHPTYPS 858 (913)
Q Consensus 781 ~I~i~-D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d~I~vwdl~~~~~~~~i~~~-~~~~~~i~~l~~sp~g~~ 858 (913)
.+..- |.....-......-...++++.+.+++++++++..+.+++=....+.....+..- ......+..+.+.+++.
T Consensus 194 ~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~- 272 (334)
T PRK13684 194 NFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLARGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGE- 272 (334)
T ss_pred eEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEecCCEEEEccCCCCCccccccCCccccccceeeEEEcCCCC-
Confidence 55432 2221111112223456789999999999887776655432223333322222110 01224577888988776
Q ss_pred EEEEEcCCeEEEEECCCCcEEEE----cccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 002519 859 LLVIGCYQSLELWNMSENKTMTL----TAHEGLIAALAVSTETGYVASASHDKFVKLWK 913 (913)
Q Consensus 859 l~s~s~dg~I~iwd~~~~~~~~~----~~h~~~V~~l~~spdg~~Lasgs~DG~I~IWd 913 (913)
+++++.+|.|.. ....++.... ..-....+.+.|..+++.++ .+..|.|..|+
T Consensus 273 ~~~~G~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~G~il~~~ 329 (334)
T PRK13684 273 IWAGGGNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-LGQRGVLLRYV 329 (334)
T ss_pred EEEEcCCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-ECCCceEEEec
Confidence 555666776653 4455554322 12234578888877776655 55678777664
No 405
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=96.61 E-value=2.9 Score=51.09 Aligned_cols=240 Identities=13% Similarity=0.010 Sum_probs=123.4
Q ss_pred CCCEEEEEEecCC----CEEEEEe---CCCcEEEEECCCCc---eeeEeccCCCCeEEEE--ECCCC-CEEEEEeCCCeE
Q 002519 633 TSKVICCHFSSDG----KLLATGG---HDKKAVLWHTDTLK---SKTNLEEHSSLITDVR--FSPSM-PRLATSSFDKTV 699 (913)
Q Consensus 633 ~~~V~~l~fspdg----~~Lasgs---~Dg~V~vwd~~~~~---~~~~l~~h~~~V~~l~--fspdg-~~Lasgs~Dg~V 699 (913)
-++|.+++.-.+. ..++||+ .||+++|..-.-+- ....+.| -..++.++ +.++- .+|+.+- -+.-
T Consensus 353 LgPI~Dm~Vvd~d~q~q~qivtCsGa~kdgSLRiiRngi~I~e~A~i~l~G-ikg~w~lk~~v~~~~d~ylvlsf-~~eT 430 (1096)
T KOG1897|consen 353 LGPIVDMCVVDLDRQGQGQIVTCSGAFKDGSLRIIRNGIGIDELASIDLPG-IKGMWSLKSMVDENYDNYLVLSF-ISET 430 (1096)
T ss_pred ccceeeEEEEeccccCCceEEEEeCCCCCCcEEEEecccccceeeEeecCC-ccceeEeeccccccCCcEEEEEe-ccce
Confidence 4578877765422 3555554 58899998654221 1223444 44577777 44332 2554443 3345
Q ss_pred EEEEcCCCCceeEEeccCCCCeEEEEEcCC-CCeEEEEEeCCCcEEEEEcCCCeeeEEeeCCceEEEEecCCCEEEEEEc
Q 002519 700 RVWDADNPGYSLRTFMGHSASVMSLDFHPN-KDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAA 778 (913)
Q Consensus 700 ~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~-~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~s~~~~~ll~~~~ 778 (913)
++..+... .......+.......+..+.- ++.++=.. ...||+++-..........+..+....+.+...+++++.
T Consensus 431 rvl~i~~e-~ee~~~~gf~~~~~Tif~S~i~g~~lvQvT--s~~iRl~ss~~~~~~W~~p~~~ti~~~~~n~sqVvvA~~ 507 (1096)
T KOG1897|consen 431 RVLNISEE-VEETEDPGFSTDEQTIFCSTINGNQLVQVT--SNSIRLVSSAGLRSEWRPPGKITIGVVSANASQVVVAGG 507 (1096)
T ss_pred EEEEEccc-eEEeccccccccCceEEEEccCCceEEEEe--cccEEEEcchhhhhcccCCCceEEEEEeecceEEEEecC
Confidence 56666542 112222222233333333321 22222111 345677765522222223344455555566667777777
Q ss_pred CCeEEEEECCCCeEEEEe-cCCCCCeEEEEEcCCC------CEEEEEeCC--eEEEEECCCCCCCceEEEeec--CCCce
Q 002519 779 ENVVSILDAETQACRLSL-QGHTKPIDSVCWDPSG------ELLASVSED--SVRVWTVGSGSEGECVHELSC--NGNKF 847 (913)
Q Consensus 779 dg~I~i~D~~t~~~~~~l-~~h~~~V~sl~~spdg------~~l~s~s~d--~I~vwdl~~~~~~~~i~~~~~--~~~~i 847 (913)
++.+...++......... ...+..|.|+.++|-| ++++.|..+ .+.+.-+... ...+...+.. -...|
T Consensus 508 ~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~-~~~~~~~l~~~~iPRSI 586 (1096)
T KOG1897|consen 508 GLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDL-ILITHEQLSGEIIPRSI 586 (1096)
T ss_pred ccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCc-ceeeeeccCCCccchhe
Confidence 788877777766522211 2235678999999742 267777766 3333333221 1111111221 12335
Q ss_pred EEEEEeCCCCEEEEEEcCCeEEEE--ECCCCcE
Q 002519 848 HSCVFHPTYPSLLVIGCYQSLELW--NMSENKT 878 (913)
Q Consensus 848 ~~l~~sp~g~~l~s~s~dg~I~iw--d~~~~~~ 878 (913)
.-..|-.|..+|+++..||.+.-| |..++..
T Consensus 587 l~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~l 619 (1096)
T KOG1897|consen 587 LLTTFEGDIHYLLVALGDGALLYFVLDINTGQL 619 (1096)
T ss_pred eeEEeeccceEEEEEcCCceEEEEEEEcccceE
Confidence 555666678899999999977655 5555543
No 406
>PHA02713 hypothetical protein; Provisional
Probab=96.58 E-value=0.15 Score=60.96 Aligned_cols=177 Identities=6% Similarity=0.006 Sum_probs=87.2
Q ss_pred CCeEEEEEeCC------CcEEEEEcCCCeeeEE--eeCCc-eEEEEecCCCEEEEEEcCC-----eEEEEECCCCeEEE-
Q 002519 730 KDDLICSCDGD------GEIRYWSINNGSCTRV--FKGGT-AQMRFQPHLGRYLAAAAEN-----VVSILDAETQACRL- 794 (913)
Q Consensus 730 ~~~ll~sgs~D------g~I~iwdl~~~~~~~~--~~~~~-~~v~~s~~~~~ll~~~~dg-----~I~i~D~~t~~~~~- 794 (913)
++.+++.|+.+ ..+..||..+...... +.... .......++..+++|+.++ .+..||..+.+-..
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~ 382 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKML 382 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEEC
Confidence 34577677753 3478899887754321 11111 1122333445556666543 58889988764332
Q ss_pred -EecCCCCCeEEEEEcCCCCEEEEEeCC------------------------eEEEEECCCCCCCceEEEeecCCCceEE
Q 002519 795 -SLQGHTKPIDSVCWDPSGELLASVSED------------------------SVRVWTVGSGSEGECVHELSCNGNKFHS 849 (913)
Q Consensus 795 -~l~~h~~~V~sl~~spdg~~l~s~s~d------------------------~I~vwdl~~~~~~~~i~~~~~~~~~i~~ 849 (913)
.+.........++ -+|++.+.|+.+ .+..||..+. ....+..+... ....
T Consensus 383 ~~mp~~r~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td-~W~~v~~m~~~--r~~~ 457 (557)
T PHA02713 383 PDMPIALSSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNN-IWETLPNFWTG--TIRP 457 (557)
T ss_pred CCCCcccccccEEE--ECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCC-eEeecCCCCcc--cccC
Confidence 1211111111222 257766666542 4667777653 11222211111 1111
Q ss_pred EEEeCCCCEEEEEEcC------CeEEEEECCC-CcEEEEcc---cCCCeEEEEEeCCCCEEEEEeCCC--cEEEeC
Q 002519 850 CVFHPTYPSLLVIGCY------QSLELWNMSE-NKTMTLTA---HEGLIAALAVSTETGYVASASHDK--FVKLWK 913 (913)
Q Consensus 850 l~~sp~g~~l~s~s~d------g~I~iwd~~~-~~~~~~~~---h~~~V~~l~~spdg~~Lasgs~DG--~I~IWd 913 (913)
....-+++..++|+.+ ..|..||..+ .+-..+.. .......++ -++++.++||.|| .|..||
T Consensus 458 ~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~--~~~~iyv~Gg~~~~~~~e~yd 531 (557)
T PHA02713 458 GVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTIL--HDNTIMMLHCYESYMLQDTFN 531 (557)
T ss_pred cEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEE--ECCEEEEEeeecceeehhhcC
Confidence 2223355656666654 2478899887 45432222 222222222 3777888999888 444443
No 407
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.57 E-value=1.4 Score=48.11 Aligned_cols=267 Identities=12% Similarity=0.107 Sum_probs=118.0
Q ss_pred CCCEEEEEEecCCCEEEEEeCCCcEEEEEC-CCCceeeEec--cC---CCCeEEEEECCCCCEEEEEeCCCeEEEEEcCC
Q 002519 633 TSKVICCHFSSDGKLLATGGHDKKAVLWHT-DTLKSKTNLE--EH---SSLITDVRFSPSMPRLATSSFDKTVRVWDADN 706 (913)
Q Consensus 633 ~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~-~~~~~~~~l~--~h---~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~ 706 (913)
...+.+|.|..+..-+|+|. .+.| +.. +.|+.-.... .. .-...+|.|..+ ..+++ +..+ +.+...+
T Consensus 16 ~~~l~dV~F~d~~~G~~VG~-~g~i--l~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~-~g~iv-G~~g-~ll~T~D- 88 (302)
T PF14870_consen 16 DKPLLDVAFVDPNHGWAVGA-YGTI--LKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGN-EGWIV-GEPG-LLLHTTD- 88 (302)
T ss_dssp SS-EEEEEESSSS-EEEEET-TTEE--EEESSTTSS-EE-----S-----EEEEEEEETT-EEEEE-EETT-EEEEESS-
T ss_pred CCceEEEEEecCCEEEEEec-CCEE--EEECCCCccccccccCCCccceeeEEEEEecCC-ceEEE-cCCc-eEEEecC-
Confidence 45799999986666666664 4543 333 3232222211 11 223667888643 34444 4455 3333333
Q ss_pred CCceeEEec---cCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEE-e---eCCceEEEEecCCCEEEEEEcC
Q 002519 707 PGYSLRTFM---GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV-F---KGGTAQMRFQPHLGRYLAAAAE 779 (913)
Q Consensus 707 ~~~~~~~~~---~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~-~---~~~~~~v~~s~~~~~ll~~~~d 779 (913)
++..-..+. .-......|....++ ..+++ +..|.|+.= .+.++.-.. . .+....+..++++.+++++...
T Consensus 89 gG~tW~~v~l~~~lpgs~~~i~~l~~~-~~~l~-~~~G~iy~T-~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G 165 (302)
T PF14870_consen 89 GGKTWERVPLSSKLPGSPFGITALGDG-SAELA-GDRGAIYRT-TDGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRG 165 (302)
T ss_dssp TTSS-EE----TT-SS-EEEEEEEETT-EEEEE-ETT--EEEE-SSTTSSEEEEE-S----EEEEEE-TTS-EEEEETTS
T ss_pred CCCCcEEeecCCCCCCCeeEEEEcCCC-cEEEE-cCCCcEEEe-CCCCCCeeEcccCCcceeEeEEECCCCcEEEEECcc
Confidence 344333321 122333444444433 23323 334443322 222222111 1 2334556667776655555555
Q ss_pred CeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECC-CCCCC-ceEEEeecCCCceEEEEEeCCCC
Q 002519 780 NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVG-SGSEG-ECVHELSCNGNKFHSCVFHPTYP 857 (913)
Q Consensus 780 g~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d~I~vwdl~-~~~~~-~~i~~~~~~~~~i~~l~~sp~g~ 857 (913)
..+.-||.-...-...-+.....|.++.|.+++.+.+++..+.|++=+.. ..+.. +.+..+......+..++|.+++.
T Consensus 166 ~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~ 245 (302)
T PF14870_consen 166 NFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLARGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNE 245 (302)
T ss_dssp SEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEETTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-
T ss_pred cEEEEecCCCccceEEccCccceehhceecCCCCEEEEeCCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCCC
Confidence 55567776543222222334578999999999887776643377776621 11000 01111222344588999998876
Q ss_pred EEEEEEcCCeEEEEECCCCcEEEEc----ccCCCeEEEEEeCCCCEEEEEeCCCcEEEe
Q 002519 858 SLLVIGCYQSLELWNMSENKTMTLT----AHEGLIAALAVSTETGYVASASHDKFVKLW 912 (913)
Q Consensus 858 ~l~s~s~dg~I~iwd~~~~~~~~~~----~h~~~V~~l~~spdg~~Lasgs~DG~I~IW 912 (913)
..+ ++..|.| +...+.++.-... .....++.|.|..+.+-+| .+.||.|.-|
T Consensus 246 ~wa-~gg~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~-lG~~G~ll~~ 301 (302)
T PF14870_consen 246 IWA-VGGSGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFV-LGQDGVLLRY 301 (302)
T ss_dssp EEE-EESTT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEE-E-STTEEEEE
T ss_pred EEE-EeCCccE-EEeCCCCccceECccccCCCCceEEEEEcCCCceEE-ECCCcEEEEe
Confidence 555 5555543 3455666655332 2355688888876654444 5578887665
No 408
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.55 E-value=0.16 Score=56.12 Aligned_cols=119 Identities=16% Similarity=0.179 Sum_probs=87.5
Q ss_pred CCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCce----eeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Q 002519 632 STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKS----KTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP 707 (913)
Q Consensus 632 H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~----~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~ 707 (913)
..++|.+|.||+|.+.||+--.|++|.+++....+. ..+.+..+..|...+|+.+ ..+|..+..| |.+|-+...
T Consensus 65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pe 142 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPE 142 (657)
T ss_pred CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchh
Confidence 456999999999999999999999999999843222 2233445566999999866 5666666555 888888776
Q ss_pred CceeEEeccCCCCeEEEEEcCCCCeEEEEEe-CCCcEEEEEcCCCe
Q 002519 708 GYSLRTFMGHSASVMSLDFHPNKDDLICSCD-GDGEIRYWSINNGS 752 (913)
Q Consensus 708 ~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs-~Dg~I~iwdl~~~~ 752 (913)
...++..+.|+..|....|+++..-++.+.+ ..+++.=+-++++.
T Consensus 143 krslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~~ 188 (657)
T KOG2377|consen 143 KRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAGT 188 (657)
T ss_pred hhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeece
Confidence 7778888899999999999998776554444 34444445555443
No 409
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.52 E-value=1.7 Score=47.43 Aligned_cols=220 Identities=12% Similarity=0.121 Sum_probs=104.9
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCceeEEecc--C---CCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcC
Q 002519 675 SSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMG--H---SASVMSLDFHPNKDDLICSCDGDGEIRYWSIN 749 (913)
Q Consensus 675 ~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~--h---~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~ 749 (913)
...+.+|.|..+..-+++|. .+. |+...++++.-..... . .....+|.|.. ...+++| ..+ +.+...+
T Consensus 16 ~~~l~dV~F~d~~~G~~VG~-~g~--il~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~--~~g~ivG-~~g-~ll~T~D 88 (302)
T PF14870_consen 16 DKPLLDVAFVDPNHGWAVGA-YGT--ILKTTDGGKTWQPVSLDLDNPFDYHLNSISFDG--NEGWIVG-EPG-LLLHTTD 88 (302)
T ss_dssp SS-EEEEEESSSS-EEEEET-TTE--EEEESSTTSS-EE-----S-----EEEEEEEET--TEEEEEE-ETT-EEEEESS
T ss_pred CCceEEEEEecCCEEEEEec-CCE--EEEECCCCccccccccCCCccceeeEEEEEecC--CceEEEc-CCc-eEEEecC
Confidence 45789999995555556554 453 4555544433222111 1 22366777764 3344444 344 4444444
Q ss_pred CCeeeEEe------eCCceEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-e
Q 002519 750 NGSCTRVF------KGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-S 822 (913)
Q Consensus 750 ~~~~~~~~------~~~~~~v~~s~~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~ 822 (913)
.++.-..+ ++....+....+ ...++++..|.|+.=.-.-..-..........+..+..++||++++++..+ .
T Consensus 89 gG~tW~~v~l~~~lpgs~~~i~~l~~-~~~~l~~~~G~iy~T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~ 167 (302)
T PF14870_consen 89 GGKTWERVPLSSKLPGSPFGITALGD-GSAELAGDRGAIYRTTDGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRGNF 167 (302)
T ss_dssp TTSS-EE----TT-SS-EEEEEEEET-TEEEEEETT--EEEESSTTSSEEEEE-S----EEEEEE-TTS-EEEEETTSSE
T ss_pred CCCCcEEeecCCCCCCCeeEEEEcCC-CcEEEEcCCCcEEEeCCCCCCeeEcccCCcceeEeEEECCCCcEEEEECcccE
Confidence 44432222 222223333333 334444444443332211112223334445778899999999999999988 6
Q ss_pred EEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEC-CCCcEEE---Ec--ccCCCeEEEEEeCC
Q 002519 823 VRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNM-SENKTMT---LT--AHEGLIAALAVSTE 896 (913)
Q Consensus 823 I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~-~~~~~~~---~~--~h~~~V~~l~~spd 896 (913)
+.-||-... .-..........|..+.|.+++...+ ....|.|++=+. ...+... .. ...-.+.+++|.++
T Consensus 168 ~~s~~~G~~---~w~~~~r~~~~riq~~gf~~~~~lw~-~~~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~ 243 (302)
T PF14870_consen 168 YSSWDPGQT---TWQPHNRNSSRRIQSMGFSPDGNLWM-LARGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPP 243 (302)
T ss_dssp EEEE-TT-S---S-EEEE--SSS-EEEEEE-TTS-EEE-EETTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSS
T ss_pred EEEecCCCc---cceEEccCccceehhceecCCCCEEE-EeCCcEEEEccCCCCccccccccCCcccCceeeEEEEecCC
Confidence 677875321 11222222467899999999987555 458888888872 2222221 11 12334899999999
Q ss_pred CCEEEEEeCC
Q 002519 897 TGYVASASHD 906 (913)
Q Consensus 897 g~~Lasgs~D 906 (913)
+...++|+..
T Consensus 244 ~~~wa~gg~G 253 (302)
T PF14870_consen 244 NEIWAVGGSG 253 (302)
T ss_dssp S-EEEEESTT
T ss_pred CCEEEEeCCc
Confidence 8877766544
No 410
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.48 E-value=0.038 Score=66.85 Aligned_cols=101 Identities=20% Similarity=0.277 Sum_probs=71.7
Q ss_pred CCCEEEEEeCCCcEEEEECCCC-ceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCceeEEeccCCCCeE
Q 002519 644 DGKLLATGGHDKKAVLWHTDTL-KSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVM 722 (913)
Q Consensus 644 dg~~Lasgs~Dg~V~vwd~~~~-~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~ 722 (913)
-+..++.|+..|.|-..|+... .....=+.-.++|++++|+.+|++++.|-.+|.|.+||+.. ++.++.+..|..+++
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~-~k~l~~i~e~~ap~t 176 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHR-AKILKVITEHGAPVT 176 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccC-CcceeeeeecCCccc
Confidence 3557888888888888887642 22222233467899999999999999999999999999998 667777776666655
Q ss_pred EEEE---cCCCCeEEEEEeCCCcEEEEEc
Q 002519 723 SLDF---HPNKDDLICSCDGDGEIRYWSI 748 (913)
Q Consensus 723 sl~f---sp~~~~ll~sgs~Dg~I~iwdl 748 (913)
++-+ ..++. .+++++..|. +|.+
T Consensus 177 ~vi~v~~t~~nS-~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 177 GVIFVGRTSQNS-KLLTSDTGGS--FWKL 202 (1206)
T ss_pred eEEEEEEeCCCc-EEEEccCCCc--eEEE
Confidence 5443 33333 4557766665 5554
No 411
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=96.41 E-value=1.1 Score=55.69 Aligned_cols=178 Identities=13% Similarity=0.185 Sum_probs=101.1
Q ss_pred cCCCCeEEEEEC---C--C-CCEEEEEeCCCeEEEEE------cCCCC--------ceeEEec---cCCCCeEEEEEcCC
Q 002519 673 EHSSLITDVRFS---P--S-MPRLATSSFDKTVRVWD------ADNPG--------YSLRTFM---GHSASVMSLDFHPN 729 (913)
Q Consensus 673 ~h~~~V~~l~fs---p--d-g~~Lasgs~Dg~V~Iwd------l~~~~--------~~~~~~~---~h~~~V~sl~fsp~ 729 (913)
....+|..|+|. . + ...++..-....+.|+. +.... .++..+. .......+++|+|.
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~ 156 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPW 156 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccC
Confidence 456788888887 2 1 11233444455566666 11100 1222222 12346778999998
Q ss_pred CCeEEEEEeCCCcEEEEEcCCCeeeEEeeCCceEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEc
Q 002519 730 KDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWD 809 (913)
Q Consensus 730 ~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~s~~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~s 809 (913)
...-||..+..|...|||+......+ .. ...+.....|.| ++|.... +....|+|.
T Consensus 157 ~~~q~AiVD~~G~Wsvw~i~~~~~~~---~~----------~~~~~~~~~gsi-~~d~~e~----------s~w~rI~W~ 212 (765)
T PF10214_consen 157 DQRQFAIVDEKGNWSVWDIKGRPKRK---SS----------NLRLSRNISGSI-IFDPEEL----------SNWKRILWV 212 (765)
T ss_pred ccceEEEEeccCcEEEEEeccccccC---Cc----------ceeeccCCCccc-cCCCccc----------CcceeeEec
Confidence 87788899999999999992221110 00 111111122333 3333211 445678999
Q ss_pred CCCCEEEEEeCCeEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 002519 810 PSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSE 875 (913)
Q Consensus 810 pdg~~l~s~s~d~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~ 875 (913)
.+...|++++...+.++|+.+......+. .......|..+.-++.....+..-....|..+++..
T Consensus 213 ~~~~~lLv~~r~~l~~~d~~~~~~~~~l~-~~~~~~~IlDv~~~~~~~~~~FiLTs~eiiw~~~~~ 277 (765)
T PF10214_consen 213 SDSNRLLVCNRSKLMLIDFESNWQTEYLV-TAKTWSWILDVKRSPDNPSHVFILTSKEIIWLDVKS 277 (765)
T ss_pred CCCCEEEEEcCCceEEEECCCCCccchhc-cCCChhheeeEEecCCccceEEEEecCeEEEEEccC
Confidence 98889999998899999998764433221 122345677777777632222222335666667666
No 412
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=96.38 E-value=1.5 Score=46.01 Aligned_cols=235 Identities=13% Similarity=0.046 Sum_probs=143.1
Q ss_pred CEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCceeEEe
Q 002519 635 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTF 714 (913)
Q Consensus 635 ~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~ 714 (913)
.-+.|+-.+||..-+++...+.|--.|-.+++....--+....-..|..-||+..-++-+.. -|.-.|-++.. +..|
T Consensus 63 ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~e--vt~f 139 (353)
T COG4257 63 APFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLE--VTRF 139 (353)
T ss_pred CccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccc--eEEe
Confidence 45678888999999998888888888988998887777777777888889998877765444 35555554422 2222
Q ss_pred c----cCCCCeEEEEEcCCCCeEEEEEeC---------CCcEEEEEcCCCeeeEEeeCCceEEEEecCCCEEEEEEcCCe
Q 002519 715 M----GHSASVMSLDFHPNKDDLICSCDG---------DGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENV 781 (913)
Q Consensus 715 ~----~h~~~V~sl~fsp~~~~ll~sgs~---------Dg~I~iwdl~~~~~~~~~~~~~~~v~~s~~~~~ll~~~~dg~ 781 (913)
. .-........|.+.|...| ++.. .+.|++|+...+ .....+|..|++...++.-.++.
T Consensus 140 ~lp~~~a~~nlet~vfD~~G~lWF-t~q~G~yGrLdPa~~~i~vfpaPqG-------~gpyGi~atpdGsvwyaslagna 211 (353)
T COG4257 140 PLPLEHADANLETAVFDPWGNLWF-TGQIGAYGRLDPARNVISVFPAPQG-------GGPYGICATPDGSVWYASLAGNA 211 (353)
T ss_pred ecccccCCCcccceeeCCCccEEE-eeccccceecCcccCceeeeccCCC-------CCCcceEECCCCcEEEEeccccc
Confidence 2 2345677788998876444 6542 133444444322 24567899999988888888888
Q ss_pred EEEEECCCCeEEE-Ee-cCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCE
Q 002519 782 VSILDAETQACRL-SL-QGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPS 858 (913)
Q Consensus 782 I~i~D~~t~~~~~-~l-~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~ 858 (913)
|...|..++.... .. .........+--+|-|+.-++.... .+..||-.... -....+.+....-.++.+...++.
T Consensus 212 iaridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~s--W~eypLPgs~arpys~rVD~~grV 289 (353)
T COG4257 212 IARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTS--WIEYPLPGSKARPYSMRVDRHGRV 289 (353)
T ss_pred eEEcccccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCccccc--ceeeeCCCCCCCcceeeeccCCcE
Confidence 8888887762211 11 1112334455556677766665444 66666654321 112223333333444555555554
Q ss_pred EEEEEcCCeEEEEECCCCcEEEEc
Q 002519 859 LLVIGCYQSLELWNMSENKTMTLT 882 (913)
Q Consensus 859 l~s~s~dg~I~iwd~~~~~~~~~~ 882 (913)
.++-...+.|.-||-++.....+.
T Consensus 290 W~sea~agai~rfdpeta~ftv~p 313 (353)
T COG4257 290 WLSEADAGAIGRFDPETARFTVLP 313 (353)
T ss_pred EeeccccCceeecCcccceEEEec
Confidence 444444556666666655544443
No 413
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.38 E-value=0.015 Score=66.50 Aligned_cols=79 Identities=22% Similarity=0.253 Sum_probs=66.2
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCceeEEeccCCCCeE-EEEEcCCCCeEEEEEeCCCcEEEEEcCCCee
Q 002519 675 SSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVM-SLDFHPNKDDLICSCDGDGEIRYWSINNGSC 753 (913)
Q Consensus 675 ~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~-sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~ 753 (913)
.-.|.-+.|+|.-.+||++..+|.|.++.+. ...+.++.-|...++ +++|.|||+ +|+.|-.||+|++.|++++..
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n--~qRlwtip~p~~~v~~sL~W~~DGk-llaVg~kdG~I~L~Dve~~~~ 96 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN--WQRLWTIPIPGENVTASLCWRPDGK-LLAVGFKDGTIRLHDVEKGGR 96 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec--cceeEeccCCCCccceeeeecCCCC-EEEEEecCCeEEEEEccCCCc
Confidence 3457889999999999999999999998887 445666665666677 999999966 777999999999999999877
Q ss_pred eEE
Q 002519 754 TRV 756 (913)
Q Consensus 754 ~~~ 756 (913)
+..
T Consensus 97 l~~ 99 (665)
T KOG4640|consen 97 LVS 99 (665)
T ss_pred eec
Confidence 665
No 414
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=96.35 E-value=0.21 Score=56.71 Aligned_cols=42 Identities=10% Similarity=0.042 Sum_probs=33.3
Q ss_pred ceEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCC
Q 002519 761 TAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKP 802 (913)
Q Consensus 761 ~~~v~~s~~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~ 802 (913)
...++.+|.+...+++..-|+|.++|+.++..++.+++..+.
T Consensus 310 ~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdA 351 (415)
T PF14655_consen 310 GESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDA 351 (415)
T ss_pred EEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccc
Confidence 345788999776666666689999999999988888876654
No 415
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=96.32 E-value=2.7 Score=47.62 Aligned_cols=149 Identities=14% Similarity=0.125 Sum_probs=86.0
Q ss_pred cCCCEEEEEeCCCcEEEEECCCCceeeEeccC--CCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCceeEEeccCC-C
Q 002519 643 SDGKLLATGGHDKKAVLWHTDTLKSKTNLEEH--SSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHS-A 719 (913)
Q Consensus 643 pdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h--~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~-~ 719 (913)
-|| .++++..+|.|.-.|.++++.+-....- ...+.+-.+..+|+ |+.++.+|.++.+|.++ +..+..+.... .
T Consensus 67 ~dg-~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~-G~~~W~~~~~~~~ 143 (370)
T COG1520 67 GDG-TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDAST-GTLVWSRNVGGSP 143 (370)
T ss_pred eCC-eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCC-CcEEEEEecCCCe
Confidence 344 4444577888888888887765433222 12233333333554 88888899888888875 55555554443 1
Q ss_pred CeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeCCce-E--EE--EecCCCEEEEEEc--CCeEEEEECCCCeE
Q 002519 720 SVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTA-Q--MR--FQPHLGRYLAAAA--ENVVSILDAETQAC 792 (913)
Q Consensus 720 ~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~-~--v~--~s~~~~~ll~~~~--dg~I~i~D~~t~~~ 792 (913)
.+..-....++ .++.++.++.+...|..+++.+..+..... . +. .....+.++++.. ++.+.-+|.+++..
T Consensus 144 ~~~~~~v~~~~--~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~~~~~~~~~~~a~~~~~G~~ 221 (370)
T COG1520 144 YYASPPVVGDG--TVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVGSDGYDGILYALNAEDGTL 221 (370)
T ss_pred EEecCcEEcCc--EEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEEecCCCcceEEEEEccCCcE
Confidence 12222222222 343454789999999998888766544321 1 11 1123355555555 56788888888877
Q ss_pred EEEe
Q 002519 793 RLSL 796 (913)
Q Consensus 793 ~~~l 796 (913)
+...
T Consensus 222 ~w~~ 225 (370)
T COG1520 222 KWSQ 225 (370)
T ss_pred eeee
Confidence 7664
No 416
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=96.21 E-value=0.86 Score=47.68 Aligned_cols=210 Identities=15% Similarity=0.099 Sum_probs=124.3
Q ss_pred eEEEEECCCCCEEEEEeCCCeEEEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEE-
Q 002519 678 ITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV- 756 (913)
Q Consensus 678 V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~- 756 (913)
-..|+-.+||..-+++...+.|--.|-.+ ++....-.+....-..|..-||+...|+-+ ..-|.-+|-++.+..+.
T Consensus 64 p~dvapapdG~VWft~qg~gaiGhLdP~t-Gev~~ypLg~Ga~Phgiv~gpdg~~Witd~--~~aI~R~dpkt~evt~f~ 140 (353)
T COG4257 64 PFDVAPAPDGAVWFTAQGTGAIGHLDPAT-GEVETYPLGSGASPHGIVVGPDGSAWITDT--GLAIGRLDPKTLEVTRFP 140 (353)
T ss_pred ccccccCCCCceEEecCccccceecCCCC-CceEEEecCCCCCCceEEECCCCCeeEecC--cceeEEecCcccceEEee
Confidence 45677788888888888888887778777 444444445555666788888887666222 22566677766554332
Q ss_pred e-----eCCceEEEEecCCCEEEEEEc---------CCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-
Q 002519 757 F-----KGGTAQMRFQPHLGRYLAAAA---------ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED- 821 (913)
Q Consensus 757 ~-----~~~~~~v~~s~~~~~ll~~~~---------dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d- 821 (913)
+ ........|.+++...+++.. .+.|++|+.-. ...-+.||..|+|.+.++.-.+
T Consensus 141 lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPq----------G~gpyGi~atpdGsvwyaslagn 210 (353)
T COG4257 141 LPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQ----------GGGPYGICATPDGSVWYASLAGN 210 (353)
T ss_pred cccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccCC----------CCCCcceEECCCCcEEEEecccc
Confidence 1 123456778888777776543 13444444432 2345678999999977776555
Q ss_pred eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE--EEcccCCCeEEEEEeCCCCE
Q 002519 822 SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM--TLTAHEGLIAALAVSTETGY 899 (913)
Q Consensus 822 ~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~--~~~~h~~~V~~l~~spdg~~ 899 (913)
.|-..|..++. .+.+..-.........+-.+|-++..++....+.+..||-....-. .+.+....-.++.+...++.
T Consensus 211 aiaridp~~~~-aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~sW~eypLPgs~arpys~rVD~~grV 289 (353)
T COG4257 211 AIARIDPFAGH-AEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTSWIEYPLPGSKARPYSMRVDRHGRV 289 (353)
T ss_pred ceEEcccccCC-cceecCCCcccccccccccCccCcEEEeccCCceeeEeCcccccceeeeCCCCCCCcceeeeccCCcE
Confidence 67666765542 1222221221233445555677777777667778888876654433 33344444444444444443
Q ss_pred EE
Q 002519 900 VA 901 (913)
Q Consensus 900 La 901 (913)
..
T Consensus 290 W~ 291 (353)
T COG4257 290 WL 291 (353)
T ss_pred Ee
Confidence 33
No 417
>smart00667 LisH Lissencephaly type-1-like homology motif. Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly.
Probab=96.12 E-value=0.0084 Score=41.96 Aligned_cols=31 Identities=26% Similarity=0.454 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHhcCCCC
Q 002519 9 DKMLDVYIHDYLVKRDLKASAQAFQAEGKVS 39 (913)
Q Consensus 9 ~~~l~~yiydyl~~~~~~~~a~a~~~e~~~~ 39 (913)
++.|+..|++||.+.|+.++|++|..|..+.
T Consensus 3 ~~~l~~lI~~yL~~~g~~~ta~~l~~e~~~~ 33 (34)
T smart00667 3 RSELNRLILEYLLRNGYEETAETLQKESGLS 33 (34)
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHHhCCC
Confidence 4568999999999999999999999997654
No 418
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=96.05 E-value=2.2 Score=47.78 Aligned_cols=186 Identities=17% Similarity=0.185 Sum_probs=110.8
Q ss_pred cCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEEC----CCCCE--EEEEeC-C---CeEEEEEcCCCCceeE
Q 002519 643 SDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFS----PSMPR--LATSSF-D---KTVRVWDADNPGYSLR 712 (913)
Q Consensus 643 pdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fs----pdg~~--Lasgs~-D---g~V~Iwdl~~~~~~~~ 712 (913)
|...+|+....++-+.+||++- +.+..+.. +.++.|... -+++. |+.++. + .+|+||.++.....+.
T Consensus 66 p~kSlIigTdK~~GL~VYdL~G-k~lq~~~~--Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~ 142 (381)
T PF02333_consen 66 PAKSLIIGTDKKGGLYVYDLDG-KELQSLPV--GRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELT 142 (381)
T ss_dssp GGG-EEEEEETTTEEEEEETTS--EEEEE-S--S-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEE
T ss_pred cccceEEEEeCCCCEEEEcCCC-cEEEeecC--CCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcce
Confidence 4455777778888999999864 55555542 334444332 13332 444443 2 4799998874333343
Q ss_pred Eecc-------CCCCeEEEEEc--C-CCCeEEEEEeCCCcEEEEEcC---CC----eeeEEeeC--CceEEEEecCCCEE
Q 002519 713 TFMG-------HSASVMSLDFH--P-NKDDLICSCDGDGEIRYWSIN---NG----SCTRVFKG--GTAQMRFQPHLGRY 773 (913)
Q Consensus 713 ~~~~-------h~~~V~sl~fs--p-~~~~ll~sgs~Dg~I~iwdl~---~~----~~~~~~~~--~~~~v~~s~~~~~l 773 (913)
.+.. ....++.+|+. + ++..+++....+|.+..|.+. .+ +.++.|.. .+..+......+.+
T Consensus 143 ~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGCVVDDe~g~L 222 (381)
T PF02333_consen 143 DVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGSQPEGCVVDDETGRL 222 (381)
T ss_dssp E-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEEEEETTTTEE
T ss_pred EcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCCcceEEEEecccCCE
Confidence 3321 12347778874 3 456677788889999888775 22 35666654 44567777888899
Q ss_pred EEEEcCCeEEEEECCC-----CeEEEEecC--CCCCeEEEEEc--CCCC-EEEEEeCC--eEEEEECCCC
Q 002519 774 LAAAAENVVSILDAET-----QACRLSLQG--HTKPIDSVCWD--PSGE-LLASVSED--SVRVWTVGSG 831 (913)
Q Consensus 774 l~~~~dg~I~i~D~~t-----~~~~~~l~~--h~~~V~sl~~s--pdg~-~l~s~s~d--~I~vwdl~~~ 831 (913)
+++-.+.-|.-|+.+- +..+....+ ....|..|++- .+++ ||++.+.+ +..||+....
T Consensus 223 YvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~ 292 (381)
T PF02333_consen 223 YVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGP 292 (381)
T ss_dssp EEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT
T ss_pred EEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCC
Confidence 9999998898898762 223333322 34568888775 3454 77776665 8999998754
No 419
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=95.89 E-value=0.78 Score=56.48 Aligned_cols=66 Identities=14% Similarity=0.089 Sum_probs=45.1
Q ss_pred EEEEEeCCCcEEEEEcCCCeeeEEeeCCce---------------EEEEec--CCCEEEEEEc----------CCeEEEE
Q 002519 733 LICSCDGDGEIRYWSINNGSCTRVFKGGTA---------------QMRFQP--HLGRYLAAAA----------ENVVSIL 785 (913)
Q Consensus 733 ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~---------------~v~~s~--~~~~ll~~~~----------dg~I~i~ 785 (913)
.|+.++.|+.|.-.|.++++.+..|..... .+.-.| .++.+++++. +|.|+-|
T Consensus 262 rV~~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~ 341 (764)
T TIGR03074 262 RIILPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAF 341 (764)
T ss_pred EEEEecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEE
Confidence 344777899999999999998876632110 001111 2356666643 5789999
Q ss_pred ECCCCeEEEEecC
Q 002519 786 DAETQACRLSLQG 798 (913)
Q Consensus 786 D~~t~~~~~~l~~ 798 (913)
|.++++.+..+..
T Consensus 342 Da~TGkl~W~~~~ 354 (764)
T TIGR03074 342 DVNTGALVWAWDP 354 (764)
T ss_pred ECCCCcEeeEEec
Confidence 9999999988763
No 420
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.89 E-value=0.27 Score=56.43 Aligned_cols=171 Identities=13% Similarity=0.216 Sum_probs=103.2
Q ss_pred CCeEEEEEcCCCCeEEEEEe--CCCcEEEEEcCCCeeeEEeeCCceEEEEecCC----CEEEEEEcCCeEEEEECC----
Q 002519 719 ASVMSLDFHPNKDDLICSCD--GDGEIRYWSINNGSCTRVFKGGTAQMRFQPHL----GRYLAAAAENVVSILDAE---- 788 (913)
Q Consensus 719 ~~V~sl~fsp~~~~ll~sgs--~Dg~I~iwdl~~~~~~~~~~~~~~~v~~s~~~----~~ll~~~~dg~I~i~D~~---- 788 (913)
.+|..|+|. ||+.++.+.- .+|.+++=|- +.+..| .++..+.|.|-+ ..+++.-....|.||-+-
T Consensus 20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGds---~viGqF-EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~ 94 (671)
T PF15390_consen 20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGDS---KVIGQF-EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTT 94 (671)
T ss_pred ccccceEec-CCCEEEEEeeeeeCCccccCCc---cEeecc-ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCcc
Confidence 467788886 5666665542 2444444332 223333 356677887763 468888888899999664
Q ss_pred -CCeEEEEecCCC-C--C--eEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEE
Q 002519 789 -TQACRLSLQGHT-K--P--IDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLV 861 (913)
Q Consensus 789 -t~~~~~~l~~h~-~--~--V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s 861 (913)
..+.+..-..+- . + -..+.|+|...+|++-... .-.+++++.... .....+ ...+.|+|.+|..||.+|++
T Consensus 95 e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~s-rVkaDi-~~~G~IhCACWT~DG~RLVV 172 (671)
T PF15390_consen 95 ERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSS-RVKADI-KTSGLIHCACWTKDGQRLVV 172 (671)
T ss_pred ccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCc-eEEEec-cCCceEEEEEecCcCCEEEE
Confidence 233333222211 1 1 2357899999988876666 445666655432 222223 44778999999999998887
Q ss_pred EEcCC-eEEEEECCCCcEE-----EEcccCCCeEEEEEeCC
Q 002519 862 IGCYQ-SLELWNMSENKTM-----TLTAHEGLIAALAVSTE 896 (913)
Q Consensus 862 ~s~dg-~I~iwd~~~~~~~-----~~~~h~~~V~~l~~spd 896 (913)
+-... .-+|||-...... .+..-++.|.++.-.-|
T Consensus 173 AvGSsLHSyiWd~~qKtL~~CsfcPVFdv~~~Icsi~AT~d 213 (671)
T PF15390_consen 173 AVGSSLHSYIWDSAQKTLHRCSFCPVFDVGGYICSIEATVD 213 (671)
T ss_pred EeCCeEEEEEecCchhhhhhCCcceeecCCCceEEEEEecc
Confidence 76554 7788986554322 34445566666654443
No 421
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=95.85 E-value=3.7 Score=45.07 Aligned_cols=229 Identities=13% Similarity=0.033 Sum_probs=109.4
Q ss_pred CCCEEEEEeCCCcEEEEECCC--CceeeEeccCCCCeEEEEECCCCCEEEEEeC-CCeEEEEEcCCCCc-----------
Q 002519 644 DGKLLATGGHDKKAVLWHTDT--LKSKTNLEEHSSLITDVRFSPSMPRLATSSF-DKTVRVWDADNPGY----------- 709 (913)
Q Consensus 644 dg~~Lasgs~Dg~V~vwd~~~--~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~-Dg~V~Iwdl~~~~~----------- 709 (913)
++++|+.|+.+|...+. +.. .+..+.+ +...|+++...+..+.|++-+. ...++++++..-..
T Consensus 12 ~~~~lL~GTe~Gly~~~-~~~~~~~~~kl~--~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~ 88 (302)
T smart00036 12 DGKWLLVGTEEGLYVLN-ISDQPGTLEKLI--GRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLV 88 (302)
T ss_pred CCcEEEEEeCCceEEEE-cccCCCCeEEec--CcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCcccc
Confidence 44689999988855544 554 2333333 4568999999988877766653 34499999843110
Q ss_pred ---eeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCC----eeeEEe---e---CCceEEEE-ecC--CCEE
Q 002519 710 ---SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG----SCTRVF---K---GGTAQMRF-QPH--LGRY 773 (913)
Q Consensus 710 ---~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~----~~~~~~---~---~~~~~v~~-s~~--~~~l 773 (913)
......++.....-+++......+++++.....|.++..... ...+.+ . .......+ +.. ...+
T Consensus 89 ~~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~l 168 (302)
T smart00036 89 IRKNVLTKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPGI 168 (302)
T ss_pred ccccceEeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccceEE
Confidence 011122344433334443322223334445666776644322 112211 0 11111222 222 3456
Q ss_pred EEEEcCCeEEEEECCC--Ce---E--EEEecCCC-CCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCCceEEEeecCCC
Q 002519 774 LAAAAENVVSILDAET--QA---C--RLSLQGHT-KPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGN 845 (913)
Q Consensus 774 l~~~~dg~I~i~D~~t--~~---~--~~~l~~h~-~~V~sl~~spdg~~l~s~s~d~I~vwdl~~~~~~~~i~~~~~~~~ 845 (913)
++|+..+...++++.. .. . -....... .++ ++...+++.+|+ +-++...+.|.... .......+.- ..
T Consensus 169 cvG~~~~~~~~~~~~~~~~~~~d~sl~~~~~~~~~~p~-~i~~l~~~e~Ll-c~~~~~v~Vn~~G~-~~~r~~~l~w-~~ 244 (302)
T smart00036 169 CIGSDKGGGDVVQFHESLVSKEDLSLPFLSEETSLKPI-SVVQVPRDEFLL-CYDEFGVFVNLYGK-RRSRNPILHW-EF 244 (302)
T ss_pred EEEEcCCCCeEEEEeecccccccccccccccccccCce-EEEEECCCeEEE-EECcEEEEEeCCCC-ccccceEEEc-CC
Confidence 6665543344444422 10 0 00011111 233 333344454444 44444444454321 1111112222 33
Q ss_pred ceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEc
Q 002519 846 KFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLT 882 (913)
Q Consensus 846 ~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~ 882 (913)
...++++.. .+|++-. ++.|.|+++.+++.+...
T Consensus 245 ~p~~~~~~~--pyll~~~-~~~ievr~l~~~~l~q~i 278 (302)
T smart00036 245 MPESFAYHS--PYLLAFH-DNGIEIRSIKTGELLQEL 278 (302)
T ss_pred cccEEEEEC--CEEEEEc-CCcEEEEECCCCceEEEE
Confidence 455666663 5666665 556999999999877433
No 422
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=95.85 E-value=3.3 Score=44.40 Aligned_cols=197 Identities=16% Similarity=0.142 Sum_probs=112.7
Q ss_pred CEEEEEEecCCCEEEEEeCCCcEEEEECC-------CCceeeEecc-----CCCCeEEEEECCCCC------------EE
Q 002519 635 KVICCHFSSDGKLLATGGHDKKAVLWHTD-------TLKSKTNLEE-----HSSLITDVRFSPSMP------------RL 690 (913)
Q Consensus 635 ~V~~l~fspdg~~Lasgs~Dg~V~vwd~~-------~~~~~~~l~~-----h~~~V~~l~fspdg~------------~L 690 (913)
.-+.|+|+|.+.+-++....++..+||.. ....+.++.. .....+.+.|+.... .+
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF 103 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence 35789999999888888888999999986 1123344442 234678888875322 36
Q ss_pred EEEeCCCeEEEEEcCCCCc----eeEEec-cCCCCe-EEEEEcC--CCCeEEEEEeCCCcEEEEEcCCCeee--EEeeCC
Q 002519 691 ATSSFDKTVRVWDADNPGY----SLRTFM-GHSASV-MSLDFHP--NKDDLICSCDGDGEIRYWSINNGSCT--RVFKGG 760 (913)
Q Consensus 691 asgs~Dg~V~Iwdl~~~~~----~~~~~~-~h~~~V-~sl~fsp--~~~~ll~sgs~Dg~I~iwdl~~~~~~--~~~~~~ 760 (913)
+.+++||+|.-|.-.-... .+..+. .....| ..+++.. .+..|.++--..++|.+||-.-.+.. ..|...
T Consensus 104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP 183 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDP 183 (336)
T ss_pred EEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCC
Confidence 8889999999998532111 112222 112233 3455543 34556655556899999985533221 111111
Q ss_pred ceEEEE-----ecCCCEE--------------EEEEcCCeEEEEECCCCeEEEEec--CCCCCeEEEEEcC------CCC
Q 002519 761 TAQMRF-----QPHLGRY--------------LAAAAENVVSILDAETQACRLSLQ--GHTKPIDSVCWDP------SGE 813 (913)
Q Consensus 761 ~~~v~~-----s~~~~~l--------------l~~~~dg~I~i~D~~t~~~~~~l~--~h~~~V~sl~~sp------dg~ 813 (913)
....-| -.-++.+ +.+..-|.|.+||..- ..+.++. +.-..-+.|+..| .|.
T Consensus 184 ~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G-~l~~r~as~g~LNaPWG~a~APa~FG~~sg~ 262 (336)
T TIGR03118 184 ALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNG-QLLRRVASSGRLNAPWGLAIAPESFGSLSGA 262 (336)
T ss_pred CCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCC-cEEEEeccCCcccCCceeeeChhhhCCCCCC
Confidence 100011 1111222 2233346889998864 4444442 2333455677655 466
Q ss_pred EEEEEeCC-eEEEEECCCCC
Q 002519 814 LLASVSED-SVRVWTVGSGS 832 (913)
Q Consensus 814 ~l~s~s~d-~I~vwdl~~~~ 832 (913)
+|+.--.| +|.+||..++.
T Consensus 263 lLVGNFGDG~InaFD~~sG~ 282 (336)
T TIGR03118 263 LLVGNFGDGTINAYDPQSGA 282 (336)
T ss_pred eEEeecCCceeEEecCCCCc
Confidence 77766566 99999998773
No 423
>PHA03098 kelch-like protein; Provisional
Probab=95.85 E-value=0.32 Score=58.16 Aligned_cols=152 Identities=9% Similarity=0.023 Sum_probs=74.0
Q ss_pred CCeEEEEEeCC-----CcEEEEEcCCCeeeEE--eeCCc-eEEEEecCCCEEEEEEcC------CeEEEEECCCCeEEEE
Q 002519 730 KDDLICSCDGD-----GEIRYWSINNGSCTRV--FKGGT-AQMRFQPHLGRYLAAAAE------NVVSILDAETQACRLS 795 (913)
Q Consensus 730 ~~~ll~sgs~D-----g~I~iwdl~~~~~~~~--~~~~~-~~v~~s~~~~~ll~~~~d------g~I~i~D~~t~~~~~~ 795 (913)
++.+++.|+.+ ..+.+||..+.+.... +.... .......++..++.|+.+ +.+..||..+.+-...
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~ 421 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKG 421 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeec
Confidence 34566677765 3477888877654322 11111 111222344455555531 4688899887643321
Q ss_pred ecCCCC-CeEEEEEcCCCCEEEEEeCC---------eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEEEEcC
Q 002519 796 LQGHTK-PIDSVCWDPSGELLASVSED---------SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY 865 (913)
Q Consensus 796 l~~h~~-~V~sl~~spdg~~l~s~s~d---------~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~d 865 (913)
-..... .-.+++ ..++++++.|+.+ .+.+||..+.. ...+..+.........+.+ +++.+++|+.+
T Consensus 422 ~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~-W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~ 497 (534)
T PHA03098 422 SPLPISHYGGCAI-YHDGKIYVIGGISYIDNIKVYNIVESYNPVTNK-WTELSSLNFPRINASLCIF--NNKIYVVGGDK 497 (534)
T ss_pred CCCCccccCceEE-EECCEEEEECCccCCCCCcccceEEEecCCCCc-eeeCCCCCcccccceEEEE--CCEEEEEcCCc
Confidence 111111 111222 2356666666532 37888887542 1222111111111222222 56666666654
Q ss_pred -----CeEEEEECCCCcEEEEcccC
Q 002519 866 -----QSLELWNMSENKTMTLTAHE 885 (913)
Q Consensus 866 -----g~I~iwd~~~~~~~~~~~h~ 885 (913)
+.|.+||..+..-..+....
T Consensus 498 ~~~~~~~v~~yd~~~~~W~~~~~~p 522 (534)
T PHA03098 498 YEYYINEIEVYDDKTNTWTLFCKFP 522 (534)
T ss_pred CCcccceeEEEeCCCCEEEecCCCc
Confidence 47889998887655444433
No 424
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=95.82 E-value=4.4 Score=45.73 Aligned_cols=218 Identities=11% Similarity=0.040 Sum_probs=102.1
Q ss_pred CCCEEEEEe-CCCeEEEEEcCCCCc---eeEEecc---CC----CCeEEEEEcCCCCeEEEEE--e----CCCcEEEEEc
Q 002519 686 SMPRLATSS-FDKTVRVWDADNPGY---SLRTFMG---HS----ASVMSLDFHPNKDDLICSC--D----GDGEIRYWSI 748 (913)
Q Consensus 686 dg~~Lasgs-~Dg~V~Iwdl~~~~~---~~~~~~~---h~----~~V~sl~fsp~~~~ll~sg--s----~Dg~I~iwdl 748 (913)
+.++|+..+ ..+.|+|.|+.+.-. ..+++.. +. ..-..+...|+|+.+| ++ + .-|.+.++|-
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imI-S~lGd~~G~g~Ggf~llD~ 164 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMI-SALGDADGNGPGGFVLLDG 164 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEE-EEEEETTS-S--EEEEE-T
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEE-EeccCCCCCCCCcEEEEcC
Confidence 456777777 578899999985322 2233321 10 1222344456766444 43 2 2356888998
Q ss_pred CCCeeeEEeeCCc------eEEEEecCCCEEEEEEc--------------------CCeEEEEECCCCeEEEEecCCCC-
Q 002519 749 NNGSCTRVFKGGT------AQMRFQPHLGRYLAAAA--------------------ENVVSILDAETQACRLSLQGHTK- 801 (913)
Q Consensus 749 ~~~~~~~~~~~~~------~~v~~s~~~~~ll~~~~--------------------dg~I~i~D~~t~~~~~~l~~h~~- 801 (913)
++.+.+...+... ..+-|.|..+.++++.. ..++.+||..+.+.+.++.--..
T Consensus 165 ~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g 244 (461)
T PF05694_consen 165 ETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEG 244 (461)
T ss_dssp TT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTE
T ss_pred ccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCC
Confidence 8877777665422 34667777777776542 34899999999999988875432
Q ss_pred -CeEEEEEcCC--CCEEEEEe-CC-eEEEEECCCCCCCc--eEEEeecC-----------------CCceEEEEEeCCCC
Q 002519 802 -PIDSVCWDPS--GELLASVS-ED-SVRVWTVGSGSEGE--CVHELSCN-----------------GNKFHSCVFHPTYP 857 (913)
Q Consensus 802 -~V~sl~~spd--g~~l~s~s-~d-~I~vwdl~~~~~~~--~i~~~~~~-----------------~~~i~~l~~sp~g~ 857 (913)
....|.|..+ ..+-++++ -. +|..|--....... .+..+... ..-|+.|.+|.|.+
T Consensus 245 ~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDr 324 (461)
T PF05694_consen 245 QMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDR 324 (461)
T ss_dssp EEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-
T ss_pred CceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCC
Confidence 3556777553 44433333 33 55444432222221 11111110 23478899999999
Q ss_pred EEEEEEc-CCeEEEEECCCCcEEEE-----cc---------------cCCCeEEEEEeCCCCEEEEEe
Q 002519 858 SLLVIGC-YQSLELWNMSENKTMTL-----TA---------------HEGLIAALAVSTETGYVASAS 904 (913)
Q Consensus 858 ~l~s~s~-dg~I~iwd~~~~~~~~~-----~~---------------h~~~V~~l~~spdg~~Lasgs 904 (913)
+|++++. .|.|+.||+.....-.+ .+ -.+...-|..|-||++|...+
T Consensus 325 fLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 325 FLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred EEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence 9998886 58999999986432211 11 112335678888998876654
No 425
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=95.82 E-value=0.0042 Score=73.09 Aligned_cols=120 Identities=15% Similarity=0.159 Sum_probs=75.5
Q ss_pred EeecCCCCEEEEEEec-CCCEEEEEeCCCcEEEEECC--CCceeeE-----eccCCCCeEEEEECC---CCCEEEEEeCC
Q 002519 628 SVRASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTD--TLKSKTN-----LEEHSSLITDVRFSP---SMPRLATSSFD 696 (913)
Q Consensus 628 ~l~~H~~~V~~l~fsp-dg~~Lasgs~Dg~V~vwd~~--~~~~~~~-----l~~h~~~V~~l~fsp---dg~~Lasgs~D 696 (913)
.+++..+.|-.+.|-. +...++ -.-|.+.|||++ .|+.... .......+.-|.|.| +..++.++-.+
T Consensus 127 l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~ 204 (1283)
T KOG1916|consen 127 LAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKG 204 (1283)
T ss_pred HHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCC
Confidence 4567788898888854 222222 233678899987 4443322 222334445556654 55677777788
Q ss_pred CeEEEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCC
Q 002519 697 KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG 751 (913)
Q Consensus 697 g~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~ 751 (913)
++|++..+++. ....+.+|...+..++|...|-..|..-+-||++..|-+..|
T Consensus 205 ~~i~lL~~~ra--~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG 257 (1283)
T KOG1916|consen 205 GEIRLLNINRA--LRSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDG 257 (1283)
T ss_pred CceeEeeechH--HHHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCC
Confidence 99999887652 235566799999888887766555555556666666655443
No 426
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=95.78 E-value=0.023 Score=57.63 Aligned_cols=134 Identities=13% Similarity=0.052 Sum_probs=76.5
Q ss_pred EEEeCCCcEEEEECCCCceee-EeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCceeEEeccCCCCeEEEEEc
Q 002519 649 ATGGHDKKAVLWHTDTLKSKT-NLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFH 727 (913)
Q Consensus 649 asgs~Dg~V~vwd~~~~~~~~-~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fs 727 (913)
..-+.||.|+-+++...+... .-..|...-. ...-+..|++|+.||.|.+|...-.+.....+......|.++.-.
T Consensus 34 ~~~sa~~~v~~~~~~k~k~s~rse~~~~e~~~---v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~ 110 (238)
T KOG2444|consen 34 RATSADGLVRERKVRKHKESCRSERFIDEGQR---VVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPN 110 (238)
T ss_pred ccccCCcccccchhhhhhhhhhhhhhhhccee---ecccCceEEeecccceEEEecCCccchHHHhhhcccccceecccc
Confidence 334567777777765322111 1111222111 112356799999999999999875444444443344445444333
Q ss_pred CCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeCCceEEEEecCCCEEEEEEcCCeEEEEECCCC
Q 002519 728 PNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQ 790 (913)
Q Consensus 728 p~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~s~~~~~ll~~~~dg~I~i~D~~t~ 790 (913)
-+...+.++++.||.|+.|++.-.+.+.....+.. .++..+++.+.++.|.+|++...
T Consensus 111 ~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~-----~~~e~~ivv~sd~~i~~a~~S~d 168 (238)
T KOG2444|consen 111 GRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNF-----ESGEELIVVGSDEFLKIADTSHD 168 (238)
T ss_pred ccccceeEEeccCCceeeeccccCceeeeeccccC-----CCcceeEEecCCceEEeeccccc
Confidence 33344888999999999999988776654433221 23345555555666666655443
No 427
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.67 E-value=0.77 Score=56.08 Aligned_cols=27 Identities=30% Similarity=0.252 Sum_probs=21.5
Q ss_pred CCCEEEEEEecCCCEEEEEeCCCcEEE
Q 002519 633 TSKVICCHFSSDGKLLATGGHDKKAVL 659 (913)
Q Consensus 633 ~~~V~~l~fspdg~~Lasgs~Dg~V~v 659 (913)
.-.|..|.++++|++||..|..|.+.+
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~v~V~ 110 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRGVVVL 110 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCcEEEE
Confidence 346899999999999999987664443
No 428
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.63 E-value=0.45 Score=58.31 Aligned_cols=140 Identities=10% Similarity=0.100 Sum_probs=88.3
Q ss_pred CEEEEEEecCCCEEEEEe--CCCcEEEEECCCCceee-----Eec------cCCCCeEEEEECCCCC-EEEEEeCCCeEE
Q 002519 635 KVICCHFSSDGKLLATGG--HDKKAVLWHTDTLKSKT-----NLE------EHSSLITDVRFSPSMP-RLATSSFDKTVR 700 (913)
Q Consensus 635 ~V~~l~fspdg~~Lasgs--~Dg~V~vwd~~~~~~~~-----~l~------~h~~~V~~l~fspdg~-~Lasgs~Dg~V~ 700 (913)
.|..+...+|++..++.. .+-.|++||+++..... -|+ .....+.|+.|+|.-. ..+.+..|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 455566667776655543 33478899987543221 122 2233466888988644 456677799999
Q ss_pred EEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEe-------eCCceEEEEecCCCEE
Q 002519 701 VWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF-------KGGTAQMRFQPHLGRY 773 (913)
Q Consensus 701 Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~-------~~~~~~v~~s~~~~~l 773 (913)
|..+.-....+..+ .....++|++|+|.|+.++ .|...|++.-|...-. ..+.+ ...+.+++|.....++
T Consensus 182 V~~~~~~~~~v~s~-p~t~~~Tav~WSprGKQl~-iG~nnGt~vQy~P~le-ik~~ip~Pp~~e~yrvl~v~Wl~t~efl 258 (1405)
T KOG3630|consen 182 VKSTKQLAQNVTSF-PVTNSQTAVLWSPRGKQLF-IGRNNGTEVQYEPSLE-IKSEIPEPPVEENYRVLSVTWLSTQEFL 258 (1405)
T ss_pred hhhhhhhhhhhccc-CcccceeeEEeccccceee-EecCCCeEEEeecccc-eeecccCCCcCCCcceeEEEEecceeEE
Confidence 98886533333332 3556789999999998776 8888999988876532 22222 1356778887766555
Q ss_pred EEEE
Q 002519 774 LAAA 777 (913)
Q Consensus 774 l~~~ 777 (913)
++.+
T Consensus 259 vvy~ 262 (1405)
T KOG3630|consen 259 VVYG 262 (1405)
T ss_pred EEec
Confidence 5543
No 429
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=95.59 E-value=1.9 Score=45.94 Aligned_cols=154 Identities=12% Similarity=0.079 Sum_probs=88.7
Q ss_pred CEEEEEEecCCCEEEEEe---CCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEE-cCCCCce
Q 002519 635 KVICCHFSSDGKLLATGG---HDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD-ADNPGYS 710 (913)
Q Consensus 635 ~V~~l~fspdg~~Lasgs---~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwd-l~~~~~~ 710 (913)
.+...++++||..+|... ....++++... .....+. ....++.-.|++++...+....+...+++. ..++...
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--Ccceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence 689999999999877665 23345555433 3333322 223788899999987777777677777774 2222222
Q ss_pred eEEecc--CCCCeEEEEEcCCCCeEEEEEeC--CCcEEEEEcCCCeeeEEeeCCceEEEEecCCCEEEEEEcCCeEEEEE
Q 002519 711 LRTFMG--HSASVMSLDFHPNKDDLICSCDG--DGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILD 786 (913)
Q Consensus 711 ~~~~~~--h~~~V~sl~fsp~~~~ll~sgs~--Dg~I~iwdl~~~~~~~~~~~~~~~v~~s~~~~~ll~~~~dg~I~i~D 786 (913)
...... ....|.++.++|||.++++.... ++.|.+--+.... ++.-.
T Consensus 102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~--------------------------~g~~~--- 152 (253)
T PF10647_consen 102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDG--------------------------DGVPR--- 152 (253)
T ss_pred eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCC--------------------------CCCcc---
Confidence 222211 11289999999999998766633 3445443332111 11000
Q ss_pred CCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC
Q 002519 787 AETQACRLSLQGHTKPIDSVCWDPSGELLASVSED 821 (913)
Q Consensus 787 ~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d 821 (913)
.....+.........++.+.|.+++.+++.+...
T Consensus 153 -~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~~~ 186 (253)
T PF10647_consen 153 -RLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGRSA 186 (253)
T ss_pred -eeccceEecccccCcceeeeecCCCEEEEEeCCC
Confidence 0001111122234678999999999877776654
No 430
>PLN02153 epithiospecifier protein
Probab=95.52 E-value=1.2 Score=49.76 Aligned_cols=173 Identities=9% Similarity=-0.005 Sum_probs=79.3
Q ss_pred CeEEEEEeCC-----CcEEEEEcCCCeeeEEee-------CCc-eEEEEecCCCEEEEEEcC-----------CeEEEEE
Q 002519 731 DDLICSCDGD-----GEIRYWSINNGSCTRVFK-------GGT-AQMRFQPHLGRYLAAAAE-----------NVVSILD 786 (913)
Q Consensus 731 ~~ll~sgs~D-----g~I~iwdl~~~~~~~~~~-------~~~-~~v~~s~~~~~ll~~~~d-----------g~I~i~D 786 (913)
+.+++.|+.+ ..|.+||+.+.+....-. ... .......++..++.++.+ ..|.+||
T Consensus 86 ~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd 165 (341)
T PLN02153 86 TKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYN 165 (341)
T ss_pred CEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEE
Confidence 4566677653 357889988765443211 111 111222334455555543 2577889
Q ss_pred CCCCeEEEEecC----CCCCeEEEEEcCCCCEEEEEeC--------------CeEEEEECCCCCCCceEEEeec-C-CCc
Q 002519 787 AETQACRLSLQG----HTKPIDSVCWDPSGELLASVSE--------------DSVRVWTVGSGSEGECVHELSC-N-GNK 846 (913)
Q Consensus 787 ~~t~~~~~~l~~----h~~~V~sl~~spdg~~l~s~s~--------------d~I~vwdl~~~~~~~~i~~~~~-~-~~~ 846 (913)
.++.+-...-.. ....-.+++. -++++++.++. +.|.+||+.+.. ...+..... . ...
T Consensus 166 ~~~~~W~~l~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~-W~~~~~~g~~P~~r~ 243 (341)
T PLN02153 166 IADGKWVQLPDPGENFEKRGGAGFAV-VQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGK-WTEVETTGAKPSARS 243 (341)
T ss_pred CCCCeEeeCCCCCCCCCCCCcceEEE-ECCeEEEEeccccccccCCccceecCceEEEEcCCCc-EEeccccCCCCCCcc
Confidence 887643321110 0111112222 24565554431 257888886542 122211100 0 111
Q ss_pred eEEEEEeCCCCEEEEEEcC--------------CeEEEEECCCCcEEEEccc------CCC--eEEEEEeCCCCEEEEEe
Q 002519 847 FHSCVFHPTYPSLLVIGCY--------------QSLELWNMSENKTMTLTAH------EGL--IAALAVSTETGYVASAS 904 (913)
Q Consensus 847 i~~l~~sp~g~~l~s~s~d--------------g~I~iwd~~~~~~~~~~~h------~~~--V~~l~~spdg~~Lasgs 904 (913)
..++ ..-++..++.|+.. +.|+.||..+..-..+... ... ..++.+.-++++++.|+
T Consensus 244 ~~~~-~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~~~~~~~pr~~~~~~~~~v~~~~~~~~~gG 322 (341)
T PLN02153 244 VFAH-AVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGECGEPAMPRGWTAYTTATVYGKNGLLMHGG 322 (341)
T ss_pred eeee-EEECCEEEEECcccCCccccccccccccccEEEEEcCccEEEeccCCCCCCCCCccccccccccCCcceEEEEcC
Confidence 1222 22345666666641 2678888877664433211 111 12333344556777777
Q ss_pred CC
Q 002519 905 HD 906 (913)
Q Consensus 905 ~D 906 (913)
.+
T Consensus 323 ~~ 324 (341)
T PLN02153 323 KL 324 (341)
T ss_pred cC
Confidence 64
No 431
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=95.39 E-value=6.6 Score=44.76 Aligned_cols=109 Identities=12% Similarity=0.112 Sum_probs=66.4
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCCc--eEEEeec--CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 002519 800 TKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGE--CVHELSC--NGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSE 875 (913)
Q Consensus 800 ~~~V~sl~~spdg~~l~s~s~d~I~vwdl~~~~~~~--~i~~~~~--~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~ 875 (913)
...+.++.|.+++.+++++..+.+ +|....+.... .+.+... ....+..+.|.+++. +++++..|.|.+.. ..
T Consensus 280 ~~~l~~v~~~~dg~l~l~g~~G~l-~~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~-~~a~G~~G~v~~s~-D~ 356 (398)
T PLN00033 280 ARRIQNMGWRADGGLWLLTRGGGL-YVSKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKE-AWAAGGSGILLRST-DG 356 (398)
T ss_pred ccceeeeeEcCCCCEEEEeCCceE-EEecCCCCcccccceeecccCCCCcceEEEEEcCCCc-EEEEECCCcEEEeC-CC
Confidence 456889999999998887765543 33333332111 2222222 223578888887766 66666777666653 44
Q ss_pred CcEEEE----cccCCCeEEEEEeCCCCEEEEEeCCCcEEEe
Q 002519 876 NKTMTL----TAHEGLIAALAVSTETGYVASASHDKFVKLW 912 (913)
Q Consensus 876 ~~~~~~----~~h~~~V~~l~~spdg~~Lasgs~DG~I~IW 912 (913)
++.... ..-...++.+.|..+++.+++ +.+|.|.-|
T Consensus 357 G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~-G~~G~il~~ 396 (398)
T PLN00033 357 GKSWKRDKGADNIAANLYSVKFFDDKKGFVL-GNDGVLLRY 396 (398)
T ss_pred CcceeEccccCCCCcceeEEEEcCCCceEEE-eCCcEEEEe
Confidence 554322 233567889999877766654 568877665
No 432
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.38 E-value=0.53 Score=47.20 Aligned_cols=176 Identities=15% Similarity=0.118 Sum_probs=95.5
Q ss_pred CCCEEEEEeC--CCeEEEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeCCceE
Q 002519 686 SMPRLATSSF--DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQ 763 (913)
Q Consensus 686 dg~~Lasgs~--Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~ 763 (913)
++.++.+.+. ...|++||+++ +..+....-....+..=-...-++.+..-.-.||.-.++|.++.+++..+.-.-..
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~-gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~GeG 133 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTT-GQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEGEG 133 (262)
T ss_pred CCEEEEeccccccceeEEEeccC-ceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccCCcc
Confidence 4556666654 45799999997 44443332222222221122224445555667899999999999888777654444
Q ss_pred EEEecCCCEEEEEEcCCeEEEEECCCCeEEEEe----cC-CCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCc--
Q 002519 764 MRFQPHLGRYLAAAAENVVSILDAETQACRLSL----QG-HTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGE-- 835 (913)
Q Consensus 764 v~~s~~~~~ll~~~~dg~I~i~D~~t~~~~~~l----~~-h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~-- 835 (913)
-....++..++.+....+++.-|.++.....++ .+ .-..++.+.|- +|.+.+-.-.. .|...|..+++...
T Consensus 134 WgLt~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV~~wi 212 (262)
T COG3823 134 WGLTSDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSGRVVAWI 212 (262)
T ss_pred eeeecCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCCCcEEEEE
Confidence 444556666777766677777777765433322 22 11223334443 45544444333 44445554442111
Q ss_pred -------eEEEeecCCCceEEEEEeCCCCEEEEEE
Q 002519 836 -------CVHELSCNGNKFHSCVFHPTYPSLLVIG 863 (913)
Q Consensus 836 -------~i~~~~~~~~~i~~l~~sp~g~~l~s~s 863 (913)
.+.....+.+..+.+++.|....|+..+
T Consensus 213 dlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 213 DLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred EccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 1111122344567888888876555554
No 433
>PHA03098 kelch-like protein; Provisional
Probab=95.36 E-value=0.56 Score=56.08 Aligned_cols=183 Identities=10% Similarity=0.055 Sum_probs=87.3
Q ss_pred cCCCEEEEEeCCC------cEEEEECCCCceee--EeccCCCCeEEEEECCCCCEEEEEeCC-----CeEEEEEcCCCCc
Q 002519 643 SDGKLLATGGHDK------KAVLWHTDTLKSKT--NLEEHSSLITDVRFSPSMPRLATSSFD-----KTVRVWDADNPGY 709 (913)
Q Consensus 643 pdg~~Lasgs~Dg------~V~vwd~~~~~~~~--~l~~h~~~V~~l~fspdg~~Lasgs~D-----g~V~Iwdl~~~~~ 709 (913)
.++.+++.||.++ .+..||..+.+-.. .+.........+.+ ++++++.|+.+ ..+.+||..+...
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~W 370 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVF--NNRIYVIGGIYNSISLNTVESWKPGESKW 370 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEE--CCEEEEEeCCCCCEecceEEEEcCCCCce
Confidence 3556777776542 57788877654322 11111122222332 56677788765 3577888876332
Q ss_pred eeEEeccCCCCeEEEEEcCCCCeEEEEEeCC------CcEEEEEcCCCeeeEEee--CCc-eEEEEecCCCEEEEEEcC-
Q 002519 710 SLRTFMGHSASVMSLDFHPNKDDLICSCDGD------GEIRYWSINNGSCTRVFK--GGT-AQMRFQPHLGRYLAAAAE- 779 (913)
Q Consensus 710 ~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~D------g~I~iwdl~~~~~~~~~~--~~~-~~v~~s~~~~~ll~~~~d- 779 (913)
....-..+...-.+++.. ++.+++.|+.+ ..+.+||+.+.+....-. ... .......++..+++|+.+
T Consensus 371 ~~~~~lp~~r~~~~~~~~--~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~ 448 (534)
T PHA03098 371 REEPPLIFPRYNPCVVNV--NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISY 448 (534)
T ss_pred eeCCCcCcCCccceEEEE--CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEECCccC
Confidence 211100111111122222 34566666632 458899988765443211 111 111222344445555432
Q ss_pred -------CeEEEEECCCCeEEEE--ecCCCCCeEEEEEcCCCCEEEEEeCC------eEEEEECCCC
Q 002519 780 -------NVVSILDAETQACRLS--LQGHTKPIDSVCWDPSGELLASVSED------SVRVWTVGSG 831 (913)
Q Consensus 780 -------g~I~i~D~~t~~~~~~--l~~h~~~V~sl~~spdg~~l~s~s~d------~I~vwdl~~~ 831 (913)
..+.+||..+.+-... +.........+.+ ++++++.|+.+ .|.+||..+.
T Consensus 449 ~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~ 513 (534)
T PHA03098 449 IDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTN 513 (534)
T ss_pred CCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCC
Confidence 2388899887654322 1111111112222 56666666643 5777777543
No 434
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=95.21 E-value=7.1 Score=44.15 Aligned_cols=187 Identities=11% Similarity=0.023 Sum_probs=96.6
Q ss_pred CEEEEEeCCCeEEEEEcCCCCceeEEeccC--CCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeCCce-EE
Q 002519 688 PRLATSSFDKTVRVWDADNPGYSLRTFMGH--SASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTA-QM 764 (913)
Q Consensus 688 ~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h--~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~-~v 764 (913)
..++.+..||.|.-.|.++ +..+...... ...+.+-.+..+|+ |+.++.++.++.+|.++++.+..++.... .+
T Consensus 69 g~v~~~~~~G~i~A~d~~~-g~~~W~~~~~~~~~~~~~~~~~~~G~--i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~ 145 (370)
T COG1520 69 GTVYVGTRDGNIFALNPDT-GLVKWSYPLLGAVAQLSGPILGSDGK--IYVGSWDGKLYALDASTGTLVWSRNVGGSPYY 145 (370)
T ss_pred CeEEEecCCCcEEEEeCCC-CcEEecccCcCcceeccCceEEeCCe--EEEecccceEEEEECCCCcEEEEEecCCCeEE
Confidence 3555557788888888877 3322221111 12222222333554 44788899999999998988887776551 11
Q ss_pred --EEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCC---CeEEEEEcCCCCEEEEEeC--C-eEEEEECCCCCCCce
Q 002519 765 --RFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTK---PIDSVCWDPSGELLASVSE--D-SVRVWTVGSGSEGEC 836 (913)
Q Consensus 765 --~~s~~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~---~V~sl~~spdg~~l~s~s~--d-~I~vwdl~~~~~~~~ 836 (913)
........++..+.++.+...|..+++.+........ .+..--...++ .++.+.. + .+.-+|..++...-.
T Consensus 146 ~~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~vy~~~~~~~~~~~a~~~~~G~~~w~ 224 (370)
T COG1520 146 ASPPVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASG-TVYVGSDGYDGILYALNAEDGTLKWS 224 (370)
T ss_pred ecCcEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecc-eEEEecCCCcceEEEEEccCCcEeee
Confidence 1122234555555789999999999988777543221 11111111223 3333333 3 455556655522111
Q ss_pred EEE-eecCCCce------EEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE
Q 002519 837 VHE-LSCNGNKF------HSCVFHPTYPSLLVIGCYQSLELWNMSENKTM 879 (913)
Q Consensus 837 i~~-~~~~~~~i------~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~ 879 (913)
.+. .......+ ..-...-+ ..++.++.++.+..+|..+++.+
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~v~v~-~~~~~~~~~g~~~~l~~~~G~~~ 273 (370)
T COG1520 225 QKVSQTIGRTAISTTPAVDGGPVYVD-GGVYAGSYGGKLLCLDADTGELI 273 (370)
T ss_pred eeeecccCcccccccccccCceEEEC-CcEEEEecCCeEEEEEcCCCceE
Confidence 100 00000000 00001111 22466677777888888888877
No 435
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.20 E-value=0.25 Score=60.18 Aligned_cols=72 Identities=25% Similarity=0.388 Sum_probs=58.8
Q ss_pred cCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEE---EECCCCCEEEEEeCCCeEEEEEc
Q 002519 631 ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDV---RFSPSMPRLATSSFDKTVRVWDA 704 (913)
Q Consensus 631 ~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l---~fspdg~~Lasgs~Dg~V~Iwdl 704 (913)
.-.++|+|++|+-||++++.|-.+|.|.+||+..++..+.+..|..+++.+ .+..++..++++...|. +|.+
T Consensus 128 ~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 128 RVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred ccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 456899999999999999999999999999999999999888776665554 44556667888877775 5554
No 436
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.12 E-value=3.5 Score=50.47 Aligned_cols=94 Identities=12% Similarity=0.137 Sum_probs=49.5
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeee
Q 002519 675 SSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT 754 (913)
Q Consensus 675 ~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~ 754 (913)
.-.|..|.++++|++|+..|..| |.|..+.........+.+....|.|=.+.-+ ..++ .....
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~-~~~~-~~~~~-------------- 146 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVD-ERFF-TSNSS-------------- 146 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEec-hhhc-cCCCC--------------
Confidence 34688999999999999998866 5555553211111223333333333332221 2222 11111
Q ss_pred EEeeCCceEEEEecC---CCEEEEEEcCCeEEEEECCC
Q 002519 755 RVFKGGTAQMRFQPH---LGRYLAAAAENVVSILDAET 789 (913)
Q Consensus 755 ~~~~~~~~~v~~s~~---~~~ll~~~~dg~I~i~D~~t 789 (913)
..+..+.|+|. +..+++-.+|+++++||+..
T Consensus 147 ----~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~ 180 (717)
T PF10168_consen 147 ----LEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISD 180 (717)
T ss_pred ----ceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCC
Confidence 12234556655 36677777777777777654
No 437
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.09 E-value=0.19 Score=61.45 Aligned_cols=142 Identities=11% Similarity=0.030 Sum_probs=92.2
Q ss_pred CeEEEEECCCCCEEEEE--eCCCeEEEEEcCCCCce----eEEe------ccCCCCeEEEEEcCCCCeEEEEEeCCCcEE
Q 002519 677 LITDVRFSPSMPRLATS--SFDKTVRVWDADNPGYS----LRTF------MGHSASVMSLDFHPNKDDLICSCDGDGEIR 744 (913)
Q Consensus 677 ~V~~l~fspdg~~Lasg--s~Dg~V~Iwdl~~~~~~----~~~~------~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~ 744 (913)
.|..+...+|+...++. +.+-.|.+||+++-... .+-+ ........++.|.|.-....+.+..|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 45555566676655444 34557899999752111 1111 122345667889887655567788899999
Q ss_pred EEEcCCCee-eE--EeeCCceEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecC---C-CCCeEEEEEcCCCCEEEE
Q 002519 745 YWSINNGSC-TR--VFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQG---H-TKPIDSVCWDPSGELLAS 817 (913)
Q Consensus 745 iwdl~~~~~-~~--~~~~~~~~v~~s~~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~---h-~~~V~sl~~spdg~~l~s 817 (913)
+..+..... +. .+....++++|++.|..++++-..|++.-|...-. ....+.+ . ...|.+|+|.....++++
T Consensus 182 V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~le-ik~~ip~Pp~~e~yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 182 VKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLE-IKSEIPEPPVEENYRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred hhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecccc-eeecccCCCcCCCcceeEEEEecceeEEEE
Confidence 988764322 11 23446788999999999999999999988865432 2222222 1 367999999988887776
Q ss_pred Ee
Q 002519 818 VS 819 (913)
Q Consensus 818 ~s 819 (913)
.+
T Consensus 261 y~ 262 (1405)
T KOG3630|consen 261 YG 262 (1405)
T ss_pred ec
Confidence 54
No 438
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=95.05 E-value=0.48 Score=53.27 Aligned_cols=140 Identities=11% Similarity=0.103 Sum_probs=94.6
Q ss_pred CCCEEE-EEeCCCeEEEEEcCCCCceeEEeccCCCCeEEEEEcCCCC-------eEEEEEeCCCcEEEEEcCCCe-eeE-
Q 002519 686 SMPRLA-TSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKD-------DLICSCDGDGEIRYWSINNGS-CTR- 755 (913)
Q Consensus 686 dg~~La-sgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~-------~ll~sgs~Dg~I~iwdl~~~~-~~~- 755 (913)
|..+|+ .|.....++-.|++. ++.+..+.-|... -+.|.|+.+ ..| +|-.+..|.-.|.+-.. .+.
T Consensus 478 dssli~~dg~~~~kLykmDIEr-GkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtl-vGlS~~svFrIDPR~~gNKi~v 553 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIER-GKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTL-VGLSDYSVFRIDPRARGNKIKV 553 (776)
T ss_pred CcceEEecCCCcccceeeeccc-ceeeeEeecCCcc--eeecCCchhHHhcCccceE-EeecccceEEecccccCCceee
Confidence 444444 344455677778876 7778888777665 367777532 123 45567777777765432 222
Q ss_pred -EeeCCceEEEE----ecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECC
Q 002519 756 -VFKGGTAQMRF----QPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVG 829 (913)
Q Consensus 756 -~~~~~~~~v~~----s~~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d~I~vwdl~ 829 (913)
.++.-.+.-.| ....+++++++..|.|++||.-..+....+.+....|..|..+.+|++|++.|...+.+-|++
T Consensus 554 ~esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~yllL~d~~ 632 (776)
T COG5167 554 VESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKNYLLLTDVP 632 (776)
T ss_pred eeehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecceEEEEecc
Confidence 22222222223 234589999999999999997766666667777889999999999999999999888888875
No 439
>PRK13684 Ycf48-like protein; Provisional
Probab=95.05 E-value=4.9 Score=44.83 Aligned_cols=147 Identities=11% Similarity=0.082 Sum_probs=82.8
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCcee-EEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCee
Q 002519 675 SSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSL-RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC 753 (913)
Q Consensus 675 ~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~-~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~ 753 (913)
...+.++.+.+++.+++++. .|.+.. ..+..+... .....-...++++.+.+++. ++++ +..|.+++=..+.+..
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~-s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~-~~~v-g~~G~~~~~s~d~G~s 247 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSS-RGNFYS-TWEPGQTAWTPHQRNSSRRLQSMGFQPDGN-LWML-ARGGQIRFNDPDDLES 247 (334)
T ss_pred cceEEEEEECCCCeEEEEeC-CceEEE-EcCCCCCeEEEeeCCCcccceeeeEcCCCC-EEEE-ecCCEEEEccCCCCCc
Confidence 45789999999886665554 554432 222222222 22234456789999999876 4434 4467665433444433
Q ss_pred eEEee-------CCceEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEe---cCCCCCeEEEEEcCCCCEEEEEeCCeE
Q 002519 754 TRVFK-------GGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSL---QGHTKPIDSVCWDPSGELLASVSEDSV 823 (913)
Q Consensus 754 ~~~~~-------~~~~~v~~s~~~~~ll~~~~dg~I~i~D~~t~~~~~~l---~~h~~~V~sl~~spdg~~l~s~s~d~I 823 (913)
-.... .....+.+.+++ .+++++.+|.|.. ....++.-... ..-...++.+.|..+++.+++|..+.|
T Consensus 248 W~~~~~~~~~~~~~l~~v~~~~~~-~~~~~G~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~i 325 (334)
T PRK13684 248 WSKPIIPEITNGYGYLDLAYRTPG-EIWAGGGNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQRGVL 325 (334)
T ss_pred cccccCCccccccceeeEEEcCCC-CEEEEcCCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEECCCceE
Confidence 22211 123456677754 4666667776553 23333222222 122245788888888888888887777
Q ss_pred EEEE
Q 002519 824 RVWT 827 (913)
Q Consensus 824 ~vwd 827 (913)
..|+
T Consensus 326 l~~~ 329 (334)
T PRK13684 326 LRYV 329 (334)
T ss_pred EEec
Confidence 6665
No 440
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=94.99 E-value=1.3 Score=44.66 Aligned_cols=171 Identities=13% Similarity=0.134 Sum_probs=91.3
Q ss_pred CCCEEEEEeC--CCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEE-eCCCeEEEEEcCCCCceeEEeccCCCC
Q 002519 644 DGKLLATGGH--DKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATS-SFDKTVRVWDADNPGYSLRTFMGHSAS 720 (913)
Q Consensus 644 dg~~Lasgs~--Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasg-s~Dg~V~Iwdl~~~~~~~~~~~~h~~~ 720 (913)
+|.++.+.+. ...|++||+.+++.+..-.-....+..=-...-+.++..- =.||.-.++|.++ -+++..+. ..+.
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t-~~~lg~~~-y~Ge 132 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADT-LEELGRFS-YEGE 132 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHH-hhhhcccc-cCCc
Confidence 5566666553 3479999999988776554322112111111123333322 3478888898887 34444433 2344
Q ss_pred eEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEee----C----CceEEEEecCCCEEEEE-EcCCeEEEEECCCCe
Q 002519 721 VMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK----G----GTAQMRFQPHLGRYLAA-AAENVVSILDAETQA 791 (913)
Q Consensus 721 V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~----~----~~~~v~~s~~~~~ll~~-~~dg~I~i~D~~t~~ 791 (913)
-+.++. |++.++ .++...+++.-|.++.....++. + ..+.+.|. + +.+++- -.+..|...|..+++
T Consensus 133 GWgLt~--d~~~Li-msdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-d-G~lyANVw~t~~I~rI~p~sGr 207 (262)
T COG3823 133 GWGLTS--DDKNLI-MSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-D-GELYANVWQTTRIARIDPDSGR 207 (262)
T ss_pred ceeeec--CCcceE-eeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-c-cEEEEeeeeecceEEEcCCCCc
Confidence 455544 456666 45555677777776654433321 1 11112221 1 333332 235566666777776
Q ss_pred EEEEec------------CCCCCeEEEEEcCCCCEEEEEeCC
Q 002519 792 CRLSLQ------------GHTKPIDSVCWDPSGELLASVSED 821 (913)
Q Consensus 792 ~~~~l~------------~h~~~V~sl~~spdg~~l~s~s~d 821 (913)
.+..+. .|.+..+.|++.|++..|+..+..
T Consensus 208 V~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK~ 249 (262)
T COG3823 208 VVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITGKL 249 (262)
T ss_pred EEEEEEccCCchhcCccccccccccceeecCcCCeEEEecCc
Confidence 665443 244567889999988655554443
No 441
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=94.98 E-value=0.97 Score=51.16 Aligned_cols=104 Identities=11% Similarity=0.037 Sum_probs=60.7
Q ss_pred CCeEEEEEcCCCCEEEEEeCCeEEEE-ECCCCC----CCc-eEEEeecC----CCceEEEEEeCCCCEEEEEEcC-----
Q 002519 801 KPIDSVCWDPSGELLASVSEDSVRVW-TVGSGS----EGE-CVHELSCN----GNKFHSCVFHPTYPSLLVIGCY----- 865 (913)
Q Consensus 801 ~~V~sl~~spdg~~l~s~s~d~I~vw-dl~~~~----~~~-~i~~~~~~----~~~i~~l~~sp~g~~l~s~s~d----- 865 (913)
...+.++|.++| +++ ++...|..| |..... ..+ .+..+... ......++|.|+|.+.++.+..
T Consensus 72 ~~p~Gi~~~~~G-lyV-~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~ 149 (367)
T TIGR02604 72 SMVTGLAVAVGG-VYV-ATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKV 149 (367)
T ss_pred CCccceeEecCC-EEE-eCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCcee
Confidence 446788999888 444 445555544 443221 112 22223221 2346789999999866655521
Q ss_pred --------------CeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEeCC
Q 002519 866 --------------QSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHD 906 (913)
Q Consensus 866 --------------g~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~D 906 (913)
+.|.-++..+++...+...-.....++|+++|+++++-..+
T Consensus 150 ~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 150 TRPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGFQNPYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred ccCCCccCcccccCceEEEEecCCCeEEEEecCcCCCccceECCCCCEEEEccCC
Confidence 34566666665554443334456789999999887765433
No 442
>PLN02193 nitrile-specifier protein
Probab=94.85 E-value=11 Score=44.31 Aligned_cols=172 Identities=8% Similarity=-0.001 Sum_probs=81.4
Q ss_pred CeEEEEEeCC-------CcEEEEEcCCCeeeEEee-C--C---ceEE-EEecCCCEEEEEEcC-----CeEEEEECCCCe
Q 002519 731 DDLICSCDGD-------GEIRYWSINNGSCTRVFK-G--G---TAQM-RFQPHLGRYLAAAAE-----NVVSILDAETQA 791 (913)
Q Consensus 731 ~~ll~sgs~D-------g~I~iwdl~~~~~~~~~~-~--~---~~~v-~~s~~~~~ll~~~~d-----g~I~i~D~~t~~ 791 (913)
+.+++.|+.+ ..+.+||+++.+....-. + . .... .....+..++.++.+ +.+.+||+.+.+
T Consensus 176 ~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~ 255 (470)
T PLN02193 176 NKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNE 255 (470)
T ss_pred CEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCCE
Confidence 4566666643 347788888765442211 0 0 0111 122333444555543 468889998865
Q ss_pred EEEEecC----CCCCeEEEEEcCCCCEEEEEeCC------eEEEEECCCCCCCceEEEee--cCCCceEEEEEeCCCCEE
Q 002519 792 CRLSLQG----HTKPIDSVCWDPSGELLASVSED------SVRVWTVGSGSEGECVHELS--CNGNKFHSCVFHPTYPSL 859 (913)
Q Consensus 792 ~~~~l~~----h~~~V~sl~~spdg~~l~s~s~d------~I~vwdl~~~~~~~~i~~~~--~~~~~i~~l~~sp~g~~l 859 (913)
-...-.. ....-.+++. -++++++.|+.+ .+.+||+.+.. ...+.... .....-..++. -+++.+
T Consensus 256 W~~l~~~~~~P~~R~~h~~~~-~~~~iYv~GG~~~~~~~~~~~~yd~~t~~-W~~~~~~~~~~~~R~~~~~~~-~~gkiy 332 (470)
T PLN02193 256 WKLLTPVEEGPTPRSFHSMAA-DEENVYVFGGVSATARLKTLDSYNIVDKK-WFHCSTPGDSFSIRGGAGLEV-VQGKVW 332 (470)
T ss_pred EEEcCcCCCCCCCccceEEEE-ECCEEEEECCCCCCCCcceEEEEECCCCE-EEeCCCCCCCCCCCCCcEEEE-ECCcEE
Confidence 4332111 1111122222 245666666542 46778876531 11111000 00011112222 256666
Q ss_pred EEEEcC----CeEEEEECCCCcEEEEccc-----CCCeEEEEEeCCCCEEEEEeCC
Q 002519 860 LVIGCY----QSLELWNMSENKTMTLTAH-----EGLIAALAVSTETGYVASASHD 906 (913)
Q Consensus 860 ~s~s~d----g~I~iwd~~~~~~~~~~~h-----~~~V~~l~~spdg~~Lasgs~D 906 (913)
++++.+ ..|.+||+.+.+-..+... .....+ +..-++++++.|+.+
T Consensus 333 viGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~-~~~~~~~iyv~GG~~ 387 (470)
T PLN02193 333 VVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFA-SAAVGKHIVIFGGEI 387 (470)
T ss_pred EEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeE-EEEECCEEEEECCcc
Confidence 777655 4689999998876544322 111122 223356677777753
No 443
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=94.83 E-value=0.0096 Score=66.12 Aligned_cols=139 Identities=12% Similarity=0.198 Sum_probs=101.8
Q ss_pred eEEEEECCCCCEEEEEeCCCeEEEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEe
Q 002519 678 ITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF 757 (913)
Q Consensus 678 V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~ 757 (913)
-....|.+.+..++.++.+..|..||-.. ..... .........++|..+++.+++.+...+.+.+||+.+......-
T Consensus 37 pi~~~w~~e~~nlavaca~tiv~~YD~ag--q~~le-~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE 113 (615)
T KOG2247|consen 37 PIIHRWRPEGHNLAVACANTIVIYYDKAG--QVILE-LNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLE 113 (615)
T ss_pred cceeeEecCCCceehhhhhhHHHhhhhhc--ceecc-cCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHh
Confidence 34556788888899999999999998763 22222 2345566779999988888888888999999999865322211
Q ss_pred eCC---ceEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEe
Q 002519 758 KGG---TAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVS 819 (913)
Q Consensus 758 ~~~---~~~v~~s~~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s 819 (913)
.++ ..-+.|++....++.+...+.+.||...+.+.+.....|...+++++|.+.+..+...+
T Consensus 114 ~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil~dc 178 (615)
T KOG2247|consen 114 SGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVILCDC 178 (615)
T ss_pred ccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccceeeecCc
Confidence 111 12256888888888888899999999988877766666999999999998776554443
No 444
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=94.80 E-value=5.8 Score=43.16 Aligned_cols=186 Identities=12% Similarity=0.138 Sum_probs=101.0
Q ss_pred eEEEEEcCCCCceeEEecc------CCCCeEEEEEcCCC-----CeEEEEEeCCCcEEEEEcCCCeeeEEeeCCceEEEE
Q 002519 698 TVRVWDADNPGYSLRTFMG------HSASVMSLDFHPNK-----DDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRF 766 (913)
Q Consensus 698 ~V~Iwdl~~~~~~~~~~~~------h~~~V~sl~fsp~~-----~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~ 766 (913)
+|.+||+.+ ...++++.- ..+.+..+.+.... ...+++=+..+.|.++|+.+++..+...... ..
T Consensus 35 KLv~~Dl~t-~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~---~~ 110 (287)
T PF03022_consen 35 KLVAFDLKT-NQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSF---SP 110 (287)
T ss_dssp EEEEEETTT-TCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGC---TT
T ss_pred EEEEEECCC-CcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCc---ce
Confidence 577778877 445554431 34567777776532 2334444455789999999998877765411 11
Q ss_pred ecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcC---CCCEEEEEeCCeEEEEECCC-----CCC-----
Q 002519 767 QPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDP---SGELLASVSEDSVRVWTVGS-----GSE----- 833 (913)
Q Consensus 767 s~~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~sp---dg~~l~s~s~d~I~vwdl~~-----~~~----- 833 (913)
.|....+.. +| .. .... ..+..++.+| ++++|+-..-...++|.+.+ ...
T Consensus 111 ~p~~~~~~i---~g----------~~-~~~~---dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~~~~~~~~~~ 173 (287)
T PF03022_consen 111 DPDAGPFTI---GG----------ES-FQWP---DGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVLRDPSLSDAQA 173 (287)
T ss_dssp S-SSEEEEE---TT----------EE-EEET---TSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHCSTT--HHH-
T ss_pred eccccceec---cC----------ce-EecC---CCccccccCCCCCCccEEEEEeCCCCcEEEEEHHHhhCcccccccc
Confidence 111111111 11 11 1111 2277778766 77788777665445555432 111
Q ss_pred -CceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCC----cE-E-EEccc-CCCeEEEEEeC--CCCEEEEE
Q 002519 834 -GECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSEN----KT-M-TLTAH-EGLIAALAVST--ETGYVASA 903 (913)
Q Consensus 834 -~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~----~~-~-~~~~h-~~~V~~l~~sp--dg~~Lasg 903 (913)
...+..+-........++++++|..+++--..+.|..|+..+. .. + ..... -..+.++.+.+ +|.+.+.+
T Consensus 174 ~~~~v~~lG~k~~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 174 LASQVQDLGDKGSQSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS 253 (287)
T ss_dssp HHHT-EEEEE---SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred ccccceeccccCCCCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence 1122333222345667889999988888888899999998872 22 2 22222 35788999998 77766655
Q ss_pred e
Q 002519 904 S 904 (913)
Q Consensus 904 s 904 (913)
+
T Consensus 254 n 254 (287)
T PF03022_consen 254 N 254 (287)
T ss_dssp -
T ss_pred C
Confidence 4
No 445
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=94.79 E-value=0.083 Score=40.21 Aligned_cols=33 Identities=21% Similarity=0.457 Sum_probs=29.4
Q ss_pred CCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCc
Q 002519 633 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK 666 (913)
Q Consensus 633 ~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~ 666 (913)
...|.+++|+|...+||.|+.+|.|.||.+ +++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q 43 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ 43 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence 456999999999999999999999999998 444
No 446
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.74 E-value=2.2 Score=50.64 Aligned_cols=191 Identities=11% Similarity=0.045 Sum_probs=90.6
Q ss_pred CCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCceeE
Q 002519 633 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLR 712 (913)
Q Consensus 633 ~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~ 712 (913)
.+.+.+|..+|....=+. +.--.|+||++. |..+..+.-....+..+.|+.+ ..|++...||+|+||++.. ..+.
T Consensus 43 ~gGpIAV~r~p~~~~~~~-~a~~~I~If~~s-G~lL~~~~w~~~~lI~mgWs~~-eeLI~v~k~g~v~Vy~~~g--e~ie 117 (829)
T KOG2280|consen 43 FGGPIAVTRSPSKLVPLY-SARPYIRIFNIS-GQLLGRILWKHGELIGMGWSDD-EELICVQKDGTVHVYGLLG--EFIE 117 (829)
T ss_pred cCCceEEEeccccccccc-ccceeEEEEecc-ccchHHHHhcCCCeeeecccCC-ceEEEEeccceEEEeecch--hhhc
Confidence 344555555553211111 233458888864 5555555444457889999965 4677788899999999974 2222
Q ss_pred Ee----ccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeC-C---ceEEEEecCC----CEEEEEEc-C
Q 002519 713 TF----MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG-G---TAQMRFQPHL----GRYLAAAA-E 779 (913)
Q Consensus 713 ~~----~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~-~---~~~v~~s~~~----~~ll~~~~-d 779 (913)
.+ ..-...|..+.|..+| ++ .-..+|.|.+-+-......+.++. + ....+|.... ..++..-. .
T Consensus 118 ~~svg~e~~~~~I~ec~~f~~G--Va-vlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~ 194 (829)
T KOG2280|consen 118 SNSVGFESQMSDIVECRFFHNG--VA-VLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVA 194 (829)
T ss_pred ccccccccccCceeEEEEecCc--eE-EEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechh
Confidence 21 1122334444444443 32 223345554433222222222221 1 1112222111 11111110 0
Q ss_pred CeEEEEECCCCe-EEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCC
Q 002519 780 NVVSILDAETQA-CRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSG 831 (913)
Q Consensus 780 g~I~i~D~~t~~-~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~ 831 (913)
-...++-..+.. ....+......+..+..+|+.++|+--... .|.+-++...
T Consensus 195 v~~~~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~ 248 (829)
T KOG2280|consen 195 VGLHICQVEESRVQLHALSWPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLS 248 (829)
T ss_pred hhhcccceecccccccccCCCCceEEEEEEcCCcceEEEEecCCcEEEEecchh
Confidence 001111111111 111122123557788999999988877766 7777766543
No 447
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=94.65 E-value=2.7 Score=46.62 Aligned_cols=100 Identities=10% Similarity=0.084 Sum_probs=49.5
Q ss_pred CeEEEEEeCC-----CcEEEEEcCCCeee---EEe---eCCce-EEEEecCCCEEEEEEc-----CCeEEEEECCCCeEE
Q 002519 731 DDLICSCDGD-----GEIRYWSINNGSCT---RVF---KGGTA-QMRFQPHLGRYLAAAA-----ENVVSILDAETQACR 793 (913)
Q Consensus 731 ~~ll~sgs~D-----g~I~iwdl~~~~~~---~~~---~~~~~-~v~~s~~~~~ll~~~~-----dg~I~i~D~~t~~~~ 793 (913)
+.+++.|+.+ ..+..||+.+.+.. ..+ ..... ..+...++..++.++. ...+..||+.+.+-.
T Consensus 73 ~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~ 152 (323)
T TIGR03548 73 NGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEWF 152 (323)
T ss_pred CEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCCccCceEEEEcCCCCCee
Confidence 4566677654 35777787766531 111 11111 1122234445555553 246888998876433
Q ss_pred E--EecCCCCCeEEEEEcCCCCEEEEEeCC-----eEEEEECCCC
Q 002519 794 L--SLQGHTKPIDSVCWDPSGELLASVSED-----SVRVWTVGSG 831 (913)
Q Consensus 794 ~--~l~~h~~~V~sl~~spdg~~l~s~s~d-----~I~vwdl~~~ 831 (913)
. .+... ......+..-++++++.|+.+ .+.+||..+.
T Consensus 153 ~~~~~p~~-~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~ 196 (323)
T TIGR03548 153 ELPDFPGE-PRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKN 196 (323)
T ss_pred ECCCCCCC-CCCcceEEEECCEEEEEcCCCCccccceEEEecCCC
Confidence 2 12211 112222233356777777654 3567888654
No 448
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=94.65 E-value=3.3 Score=46.07 Aligned_cols=77 Identities=8% Similarity=0.029 Sum_probs=43.3
Q ss_pred EEEEecCCCCCeEEEEEcC-------CCCEEEEEeCC-eEEEEECCCCCCCceEEEe-ecCCCceEEEEEeCCCCEEEEE
Q 002519 792 CRLSLQGHTKPIDSVCWDP-------SGELLASVSED-SVRVWTVGSGSEGECVHEL-SCNGNKFHSCVFHPTYPSLLVI 862 (913)
Q Consensus 792 ~~~~l~~h~~~V~sl~~sp-------dg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~-~~~~~~i~~l~~sp~g~~l~s~ 862 (913)
++..+..| ..+..+.|.. .|.+|++.-.. .|....+...........+ ......+..+++.|||.++++.
T Consensus 245 P~~~~~~~-~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~ 323 (331)
T PF07995_consen 245 PVFAYPPH-SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSD 323 (331)
T ss_dssp -SEEETTT---EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE
T ss_pred cceeecCc-cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEE
Confidence 34444434 5566666654 34466655555 7777777544322222232 2334478999999999888877
Q ss_pred EcCCeEE
Q 002519 863 GCYQSLE 869 (913)
Q Consensus 863 s~dg~I~ 869 (913)
..+|.|+
T Consensus 324 d~~G~iy 330 (331)
T PF07995_consen 324 DSDGKIY 330 (331)
T ss_dssp -TTTTEE
T ss_pred CCCCeEe
Confidence 7777764
No 449
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=94.64 E-value=4.4 Score=41.45 Aligned_cols=56 Identities=13% Similarity=0.097 Sum_probs=40.0
Q ss_pred CEEEEEeCCCcEEEEECC--CCceeeEeccCCCCeEEEEECCCCCEEEEEeCC---C---eEEEE
Q 002519 646 KLLATGGHDKKAVLWHTD--TLKSKTNLEEHSSLITDVRFSPSMPRLATSSFD---K---TVRVW 702 (913)
Q Consensus 646 ~~Lasgs~Dg~V~vwd~~--~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D---g---~V~Iw 702 (913)
+.|+.+...++|.+|++. ......+|..- +.|..+.++..|++|+|--.+ . .+|+|
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y 92 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAY 92 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEEeecCCccceEEEEE
Confidence 355444667789999988 34455566544 789999999999999987442 2 56664
No 450
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=94.59 E-value=13 Score=44.06 Aligned_cols=246 Identities=13% Similarity=0.122 Sum_probs=118.3
Q ss_pred ecCCCEEEEEeCCCcEEEEECCCCc--eeeEeccC-CCCeEEEEECCCC-CEEEEEeCCCeEEEEEcCCCC-ceeEEecc
Q 002519 642 SSDGKLLATGGHDKKAVLWHTDTLK--SKTNLEEH-SSLITDVRFSPSM-PRLATSSFDKTVRVWDADNPG-YSLRTFMG 716 (913)
Q Consensus 642 spdg~~Lasgs~Dg~V~vwd~~~~~--~~~~l~~h-~~~V~~l~fspdg-~~Lasgs~Dg~V~Iwdl~~~~-~~~~~~~~ 716 (913)
..++..++.+..+|.++...+.... .....-+. ....+++.+..++ .+|+.||.-|.=.++.+.... ..+..+.
T Consensus 219 ~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~~- 297 (504)
T PF10433_consen 219 DKDGDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSLP- 297 (504)
T ss_dssp STTSSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEEE--
T ss_pred cCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEecc-
Confidence 4567789999999999988776433 11222222 4556677776554 477778774443344333212 2233333
Q ss_pred CCCCeEEEEEcCC---CC-------eEEEEEe--CCCcEEEEEcCCCee---eEEeeC-CceEEEEecC---CCEEEEEE
Q 002519 717 HSASVMSLDFHPN---KD-------DLICSCD--GDGEIRYWSINNGSC---TRVFKG-GTAQMRFQPH---LGRYLAAA 777 (913)
Q Consensus 717 h~~~V~sl~fsp~---~~-------~ll~sgs--~Dg~I~iwdl~~~~~---~~~~~~-~~~~v~~s~~---~~~ll~~~ 777 (913)
.-++|.++++... +. .++++++ .+|.+++..-.-+-. ...... ++..+-..+. ...+++.+
T Consensus 298 N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~Gi~~~~~~~~~~~l~~v~~iW~l~~~~~~~~~lv~S 377 (504)
T PF10433_consen 298 NWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNGIGIEGLELASSELPGVTGIWTLKLSSSDHSYLVLS 377 (504)
T ss_dssp ---SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEESBEEE--EEEEEEESTEEEEEEE-SSSSSBSEEEEE
T ss_pred CcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEeccCCceeeeeeccCCCCceEEEEeeecCCCceEEEEE
Confidence 5578888888532 12 4554433 467888774321111 111111 1222211111 13344444
Q ss_pred cCCeEEEEECC---CCeEEEEec--CC---CCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCCceEEEeec-CCCceE
Q 002519 778 AENVVSILDAE---TQACRLSLQ--GH---TKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSC-NGNKFH 848 (913)
Q Consensus 778 ~dg~I~i~D~~---t~~~~~~l~--~h---~~~V~sl~~spdg~~l~s~s~d~I~vwdl~~~~~~~~i~~~~~-~~~~i~ 848 (913)
....-+++.+. ..+.+..+. +. ...+.+..+. +.+++=.....|++.+.... .....+.. .+..|.
T Consensus 378 ~~~~T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~--~~~ivQVt~~~i~l~~~~~~---~~~~~w~~~~~~~I~ 452 (504)
T PF10433_consen 378 FPNETRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVG--DGRIVQVTPKGIRLIDLEDG---KLTQEWKPPAGSIIV 452 (504)
T ss_dssp ESSEEEEEEES----SSEEEEE---TS-SSS-EEEEEEET--TTEEEEEESSEEEEEESSST---SEEEEEE-TTS---S
T ss_pred cCCceEEEEEecccCCcchhhhhhccCCCCCCCeEEEEcC--CCeEEEEecCeEEEEECCCC---eEEEEEeCCCCCeEE
Confidence 44444444442 333332221 11 2223333333 55677677778889987554 34434322 233444
Q ss_pred EEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEc-----ccCCCeEEEEEeC
Q 002519 849 SCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLT-----AHEGLIAALAVST 895 (913)
Q Consensus 849 ~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~-~~~-----~h~~~V~~l~~sp 895 (913)
+++. ++..++++..++.+.++.+...... ... .....|.|+...|
T Consensus 453 ~a~~--~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eis~l~i~p 503 (504)
T PF10433_consen 453 AASI--NDPQVLVALSGGELVYFELDDNKISVSDNDETILELDNEISCLSIEP 503 (504)
T ss_dssp EEEE--SSSEEEEEE-TTEEEEEEEETTEEEEEEE----EE-SS-EEEEE---
T ss_pred EEEE--CCCEEEEEEeCCcEEEEEEECCceeeeeeccccccCCCceEEEEeCC
Confidence 4444 3457888888899999988877664 211 2567888888766
No 451
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=94.27 E-value=0.052 Score=64.36 Aligned_cols=119 Identities=18% Similarity=0.242 Sum_probs=76.6
Q ss_pred CEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEE-----------ECCCCCEEEEEeCCCeEEEEE
Q 002519 635 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVR-----------FSPSMPRLATSSFDKTVRVWD 703 (913)
Q Consensus 635 ~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~-----------fspdg~~Lasgs~Dg~V~Iwd 703 (913)
.|..+-|-++.-++..+-.+++|+|..+++... ..+.+|...+++++ .+|||+.|++++.||.|+.|-
T Consensus 185 ~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Q 263 (1283)
T KOG1916|consen 185 LVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQ 263 (1283)
T ss_pred eeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceee
Confidence 344444445667888888899999888765433 55666877776654 489999999999999999987
Q ss_pred cCCCC----ceeEEeccCC-CCeEEEEEcCC-------CC--eEEEEEeCCCcEEEEEcCCCeee
Q 002519 704 ADNPG----YSLRTFMGHS-ASVMSLDFHPN-------KD--DLICSCDGDGEIRYWSINNGSCT 754 (913)
Q Consensus 704 l~~~~----~~~~~~~~h~-~~V~sl~fsp~-------~~--~ll~sgs~Dg~I~iwdl~~~~~~ 754 (913)
+.-.+ .++..++.|+ .+-.|.-|+.. +. .+|-+...+..+++|.....+|.
T Consensus 264 iyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 264 IYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred eeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 75322 3445556666 22222223321 11 22333444677999988777776
No 452
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=94.22 E-value=0.92 Score=53.98 Aligned_cols=125 Identities=13% Similarity=0.167 Sum_probs=83.8
Q ss_pred cceeeeEeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEec-cCCCCeEEEEEC--CCCCEEEEEeCCCe
Q 002519 622 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE-EHSSLITDVRFS--PSMPRLATSSFDKT 698 (913)
Q Consensus 622 ~~~~~~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~-~h~~~V~~l~fs--pdg~~Lasgs~Dg~ 698 (913)
.+....++......+.-+.-|.-++..++-+....+.|||...+.....-. ...+.|.++.|. |++..|++.+....
T Consensus 18 ~w~~t~~~~T~i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~ 97 (631)
T PF12234_consen 18 EWLLTSTFETGISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHH 97 (631)
T ss_pred EEEEEEEEecCCCCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcE
Confidence 445556666666677777777766666665556689999999776444332 457789999995 78899999999999
Q ss_pred EEEEEcC-----CCC---ceeEE--eccCC-CCeEEEEEcCCCCeEEEEEeCCCcEEEEEcC
Q 002519 699 VRVWDAD-----NPG---YSLRT--FMGHS-ASVMSLDFHPNKDDLICSCDGDGEIRYWSIN 749 (913)
Q Consensus 699 V~Iwdl~-----~~~---~~~~~--~~~h~-~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~ 749 (913)
|.+|.-- +.+ ..++. +..|+ .+|.+..|.++|. ++ +|+ ++.+.|+|-.
T Consensus 98 v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~-Lv-V~s-GNqlfv~dk~ 156 (631)
T PF12234_consen 98 VLLYTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGT-LV-VGS-GNQLFVFDKW 156 (631)
T ss_pred EEEEEccchhhhcCCcccceeEEEEeecCCCCCccceeEecCCe-EE-EEe-CCEEEEECCC
Confidence 9998542 111 12222 22333 6789999999875 33 332 4678888743
No 453
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=94.16 E-value=16 Score=43.39 Aligned_cols=198 Identities=12% Similarity=0.071 Sum_probs=108.0
Q ss_pred CeEEEEECCCCCEEEEEeC-----CCeEEEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCc----EEEEE
Q 002519 677 LITDVRFSPSMPRLATSSF-----DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGE----IRYWS 747 (913)
Q Consensus 677 ~V~~l~fspdg~~Lasgs~-----Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~----I~iwd 747 (913)
.+-.++.+||.++||-+-+ .=+++|-|+.++......+. +...+++|..|+..++++...++. |....
T Consensus 130 ~Lg~~~~s~D~~~la~s~D~~G~e~y~lr~kdL~tg~~~~d~i~---~~~~~~~Wa~d~~~lfYt~~d~~~rp~kv~~h~ 206 (682)
T COG1770 130 SLGAASISPDHNLLAYSVDVLGDEQYTLRFKDLATGEELPDEIT---NTSGSFAWAADGKTLFYTRLDENHRPDKVWRHR 206 (682)
T ss_pred eeeeeeeCCCCceEEEEEecccccEEEEEEEecccccccchhhc---ccccceEEecCCCeEEEEEEcCCCCcceEEEEe
Confidence 3556788999998876533 33689999988544443333 345669999999999988776652 33333
Q ss_pred cCC--CeeeEEeeCCc----eEEEEecCCCEEEEEEc---CCeEEEEECCCCeE--EEEecCCCCCeEEEEEcCCCCEEE
Q 002519 748 INN--GSCTRVFKGGT----AQMRFQPHLGRYLAAAA---ENVVSILDAETQAC--RLSLQGHTKPIDSVCWDPSGELLA 816 (913)
Q Consensus 748 l~~--~~~~~~~~~~~----~~v~~s~~~~~ll~~~~---dg~I~i~D~~t~~~--~~~l~~h~~~V~sl~~spdg~~l~ 816 (913)
+.+ ......++... ..+.-+....+|+.... ...+++++...... ........+--..+. ..+.+++
T Consensus 207 ~gt~~~~d~lvyeE~d~~f~~~v~~s~s~~yi~i~~~~~~tsE~~ll~a~~p~~~p~vv~pr~~g~eY~~e--h~~d~f~ 284 (682)
T COG1770 207 LGTPGSSDELVYEEKDDRFFLSVGRSRSEAYIVISLGSHITSEVRLLDADDPEAEPKVVLPRENGVEYSVE--HGGDRFY 284 (682)
T ss_pred cCCCCCcceEEEEcCCCcEEEEeeeccCCceEEEEcCCCcceeEEEEecCCCCCceEEEEEcCCCcEEeee--ecCcEEE
Confidence 333 22222232221 12223344456655553 34778887766532 222211111111121 1244333
Q ss_pred EEeC--C-eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEEEEcCC---eEEEEECCCCcEE
Q 002519 817 SVSE--D-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ---SLELWNMSENKTM 879 (913)
Q Consensus 817 s~s~--d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg---~I~iwd~~~~~~~ 879 (913)
.-+. + ..+|+.............+..|...+.--.|+--..+|+....++ .|++++..++...
T Consensus 285 i~sN~~gknf~l~~ap~~~~~~~w~~~I~h~~~~~l~~~~~f~~~lVl~eR~~glp~v~v~~~~~~~~~ 353 (682)
T COG1770 285 ILSNADGKNFKLVRAPVSADKSNWRELIPHREDVRLEGVDLFADHLVLLERQEGLPRVVVRDRKTGEER 353 (682)
T ss_pred EEecCCCcceEEEEccCCCChhcCeeeeccCCCceeeeeeeeccEEEEEecccCCceEEEEecCCCcee
Confidence 3332 2 455655443112233345555666666666666677777776664 7888998877655
No 454
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=94.12 E-value=12 Score=44.87 Aligned_cols=151 Identities=14% Similarity=0.182 Sum_probs=79.5
Q ss_pred eeCCceEEEEecCCCEEEEEEcCCeEEEEECCCCe--EEEEecC-CCCC-eEEEEEcC-----C-CCEEEEEeC---C--
Q 002519 757 FKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQA--CRLSLQG-HTKP-IDSVCWDP-----S-GELLASVSE---D-- 821 (913)
Q Consensus 757 ~~~~~~~v~~s~~~~~ll~~~~dg~I~i~D~~t~~--~~~~l~~-h~~~-V~sl~~sp-----d-g~~l~s~s~---d-- 821 (913)
++..+..+.+..++..+++....|.|.+||...+. .+..+.. +... +.+ +|.+ + ..++++.+. +
T Consensus 128 l~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys-~fv~~~~~~~~~~~ll~v~~~~~~k~ 206 (670)
T PF10395_consen 128 LDDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYS-KFVNDFELENGKDLLLTVSQLSNSKL 206 (670)
T ss_pred cccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehh-hhhcccccccCCceEEEEEEcCCCcE
Confidence 45667778899999999999999999999993322 1112221 2221 111 2322 1 234443333 2
Q ss_pred eEEEEECCCCCCCceEEEee---cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE---EEc---ccC-CCeEEE
Q 002519 822 SVRVWTVGSGSEGECVHELS---CNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM---TLT---AHE-GLIAAL 891 (913)
Q Consensus 822 ~I~vwdl~~~~~~~~i~~~~---~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~---~~~---~h~-~~V~~l 891 (913)
.++++.+.. ....+.++. .+......+.|+-....|+.- .++.|.+|++...+.. .+. ... ..+.++
T Consensus 207 ~ykL~~l~~--~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l-~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl 283 (670)
T PF10395_consen 207 SYKLISLSN--ESSSIFELSSTILENFGLEDSKFCYQFGKLYQL-SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSL 283 (670)
T ss_pred EEEEEEecc--CCcceEEeehheeccCCcccceEEEeCCEEEEE-eCCEEEEEEcCCceEEEEEEechhhccccccceEe
Confidence 788998821 112333332 223333444444433334444 7789999999877654 222 111 234444
Q ss_pred EEeCCCCEEEEEeCCCcEEEeC
Q 002519 892 AVSTETGYVASASHDKFVKLWK 913 (913)
Q Consensus 892 ~~spdg~~Lasgs~DG~I~IWd 913 (913)
.--...+.|++. +.+|++.|
T Consensus 284 ~~~s~nRvLLs~--~nkIyLld 303 (670)
T PF10395_consen 284 KPPSPNRVLLSV--NNKIYLLD 303 (670)
T ss_pred ecCCCCeEEEEc--CCEEEEEe
Confidence 432233444433 45677754
No 455
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=94.03 E-value=17 Score=45.94 Aligned_cols=134 Identities=14% Similarity=0.132 Sum_probs=70.5
Q ss_pred eEEeCCCcchhhhcccccccCCccCceeeecccCCCCCCCCCCcccccccCccceeeeEeecCCCCEEEEEEec--CCC-
Q 002519 570 QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSS--DGK- 646 (913)
Q Consensus 570 ~vWd~~~g~~~~~~~~~~~~g~~d~~v~~~~~~d~~~~~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fsp--dg~- 646 (913)
.||+.++..+...-.+....|.|.-++.-.+.........+.+...-+.+...........+|...|.|..+.- ++.
T Consensus 284 ivW~~rt~~l~G~~m~~s~~g~W~LdiHH~ln~~~gIl~kGnG~n~~it~~Prvitt~mgdG~qR~veC~~C~G~a~~~~ 363 (1899)
T KOG4659|consen 284 IVWQTRTSQLMGATMRKSIGGGWTLDIHHHLNIVNGILEKGNGGNRLITEEPRVITTAMGDGHQRDVECPKCEGKADSIS 363 (1899)
T ss_pred eeeeeehhhhccccccchhcCcceeecceecccccCeEEecCCcceEeecCCceEEEeccCcccccccCCCCCCccccce
Confidence 78999887665443334445555554444444444444444444433444445555556678999998877643 222
Q ss_pred EE----EEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEEC---CCCC-EEEEEeCCCeEEEEEcCC
Q 002519 647 LL----ATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFS---PSMP-RLATSSFDKTVRVWDADN 706 (913)
Q Consensus 647 ~L----asgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fs---pdg~-~Lasgs~Dg~V~Iwdl~~ 706 (913)
+| ++.+-||.+.|=|..- ++.+.......+-+.+. +.-+ +||..--||++.|-|..+
T Consensus 364 L~aPvala~a~DGSl~VGDfNy---IRRI~~dg~v~tIl~L~~t~~sh~Yy~AvsPvdgtlyvSdp~s 428 (1899)
T KOG4659|consen 364 LFAPVALAYAPDGSLIVGDFNY---IRRISQDGQVSTILTLGLTDTSHSYYIAVSPVDGTLYVSDPLS 428 (1899)
T ss_pred eeceeeEEEcCCCcEEEccchh---eeeecCCCceEEEEEecCCCccceeEEEecCcCceEEecCCCc
Confidence 22 2456799998887642 22222111111112222 1122 455555677777666654
No 456
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=93.94 E-value=1.6 Score=52.03 Aligned_cols=108 Identities=12% Similarity=0.205 Sum_probs=69.7
Q ss_pred CeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEeecCCCceEEEEE--eCCCCEEEEEEcCCeEEEEECC----
Q 002519 802 PIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVF--HPTYPSLLVIGCYQSLELWNMS---- 874 (913)
Q Consensus 802 ~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~--sp~g~~l~s~s~dg~I~iwd~~---- 874 (913)
...-+.-+.-++..++.+.. .+.|||.+.+. .+....+ .....|..+.| .|++..|++.|..+.|.+|.-.
T Consensus 31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~-lE~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy 108 (631)
T PF12234_consen 31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGV-LEYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDY 108 (631)
T ss_pred CcceEeecccCcEEEEECCCCEEEEEEcCCcE-EEEeeee-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhh
Confidence 34444455555544444444 99999998763 1222222 34677888887 5689999999999999998531
Q ss_pred -CC-------cEEEEcccC-CCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 002519 875 -EN-------KTMTLTAHE-GLIAALAVSTETGYVASASHDKFVKLWK 913 (913)
Q Consensus 875 -~~-------~~~~~~~h~-~~V~~l~~spdg~~Lasgs~DG~I~IWd 913 (913)
.. +.+.+..|+ .+|.+.+|.++|.+++.+| ..+.|++
T Consensus 109 ~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~d 154 (631)
T PF12234_consen 109 TNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFD 154 (631)
T ss_pred hcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEEC
Confidence 11 122344555 6899999999997666553 3466654
No 457
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.92 E-value=4.1 Score=45.62 Aligned_cols=135 Identities=13% Similarity=0.089 Sum_probs=81.6
Q ss_pred eCCCcEEEEECCC--Cc-eeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCC---ceeEEeccCCCCeEEEE
Q 002519 652 GHDKKAVLWHTDT--LK-SKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG---YSLRTFMGHSASVMSLD 725 (913)
Q Consensus 652 s~Dg~V~vwd~~~--~~-~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~---~~~~~~~~h~~~V~sl~ 725 (913)
...|.+.=|-+.. .. .+..-....++|.+|+|++|.+.||+--.|++|.+++..... ....+.+..+..|...+
T Consensus 40 vrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~ 119 (657)
T KOG2377|consen 40 VRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFC 119 (657)
T ss_pred EecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEE
Confidence 3344455555442 12 222223456799999999999999999999999999984321 11223334455688999
Q ss_pred EcCCCCeEEEEEeCCCcEEEEEcCCC----eeeEEeeCCceEEEEecCCCEEEEEEc--CCeEEEEECCC
Q 002519 726 FHPNKDDLICSCDGDGEIRYWSINNG----SCTRVFKGGTAQMRFQPHLGRYLAAAA--ENVVSILDAET 789 (913)
Q Consensus 726 fsp~~~~ll~sgs~Dg~I~iwdl~~~----~~~~~~~~~~~~v~~s~~~~~ll~~~~--dg~I~i~D~~t 789 (913)
|....+ +. ... +..|.+|-+... +.++..+..+....|.++...++.++. .+++.-+-+++
T Consensus 120 W~~s~e-~A-~i~-~~G~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~ 186 (657)
T KOG2377|consen 120 WTSSTE-IA-FIT-DQGIEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRA 186 (657)
T ss_pred EecCee-EE-EEe-cCCeEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEee
Confidence 986633 33 222 444666655432 345556667777888888776665554 33444344443
No 458
>PHA02790 Kelch-like protein; Provisional
Probab=93.74 E-value=1.5 Score=51.51 Aligned_cols=178 Identities=7% Similarity=-0.019 Sum_probs=82.9
Q ss_pred CCCEEEEEeCCC-----cEEEEECCCCceee--EeccCCCCeEEEEECCCCCEEEEEeCC--CeEEEEEcCCCCcee-EE
Q 002519 644 DGKLLATGGHDK-----KAVLWHTDTLKSKT--NLEEHSSLITDVRFSPSMPRLATSSFD--KTVRVWDADNPGYSL-RT 713 (913)
Q Consensus 644 dg~~Lasgs~Dg-----~V~vwd~~~~~~~~--~l~~h~~~V~~l~fspdg~~Lasgs~D--g~V~Iwdl~~~~~~~-~~ 713 (913)
++.++++||.++ ++..||..+.+-.. .+.........+. -++...+.|+.+ ..+..||..++.... ..
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~--~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~ 348 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVP--ANNKLYVVGGLPNPTSVERWFHGDAAWVNMPS 348 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEE--ECCEEEEECCcCCCCceEEEECCCCeEEECCC
Confidence 355667776543 56678876543221 2221111122222 356677777754 357888876532211 11
Q ss_pred eccCCCCeEEEEEcCCCCeEEEEEeCCC---cEEEEEcCCCeeeEEe--eCCceEEEEecCCCEEEEEEcCCeEEEEECC
Q 002519 714 FMGHSASVMSLDFHPNKDDLICSCDGDG---EIRYWSINNGSCTRVF--KGGTAQMRFQPHLGRYLAAAAENVVSILDAE 788 (913)
Q Consensus 714 ~~~h~~~V~sl~fsp~~~~ll~sgs~Dg---~I~iwdl~~~~~~~~~--~~~~~~v~~s~~~~~ll~~~~dg~I~i~D~~ 788 (913)
+....... +++.. ++.+.+.|+.++ .+..||.++.+....- ..+....+...-++.+++.+ |.+.+||.+
T Consensus 349 l~~~r~~~-~~~~~--~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~G--G~~e~ydp~ 423 (480)
T PHA02790 349 LLKPRCNP-AVASI--NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVG--RNAEFYCES 423 (480)
T ss_pred CCCCCccc-EEEEE--CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEEC--CceEEecCC
Confidence 11111111 22222 345666777553 4778888876544321 11111111112234444443 357788887
Q ss_pred CCeEEE--EecCCCCCeEEEEEcCCCCEEEEEeCC------eEEEEECCC
Q 002519 789 TQACRL--SLQGHTKPIDSVCWDPSGELLASVSED------SVRVWTVGS 830 (913)
Q Consensus 789 t~~~~~--~l~~h~~~V~sl~~spdg~~l~s~s~d------~I~vwdl~~ 830 (913)
+.+-.. .+....... +++. -+|++.++|+.+ .|.+||..+
T Consensus 424 ~~~W~~~~~m~~~r~~~-~~~v-~~~~IYviGG~~~~~~~~~ve~Yd~~~ 471 (480)
T PHA02790 424 SNTWTLIDDPIYPRDNP-ELII-VDNKLLLIGGFYRGSYIDTIEVYNNRT 471 (480)
T ss_pred CCcEeEcCCCCCCcccc-EEEE-ECCEEEEECCcCCCcccceEEEEECCC
Confidence 764332 222111122 2222 256766666642 456666643
No 459
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=93.68 E-value=12 Score=41.65 Aligned_cols=142 Identities=13% Similarity=0.237 Sum_probs=79.9
Q ss_pred CCeEEEEEcCCCCeEEEEEeCCCc------EEEEEcCCC----eeeE-----Eee---C--------CceEEEEecCCCE
Q 002519 719 ASVMSLDFHPNKDDLICSCDGDGE------IRYWSINNG----SCTR-----VFK---G--------GTAQMRFQPHLGR 772 (913)
Q Consensus 719 ~~V~sl~fsp~~~~ll~sgs~Dg~------I~iwdl~~~----~~~~-----~~~---~--------~~~~v~~s~~~~~ 772 (913)
+.+..|.+.+++..++ +.+++|. ++.+++... ..+. .+. + ....+++.+++..
T Consensus 20 GGlSgl~~~~~~~~~~-avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~ 98 (326)
T PF13449_consen 20 GGLSGLDYDPDDGRFY-AVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF 98 (326)
T ss_pred CcEeeEEEeCCCCEEE-EEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence 4566788876555554 5555666 555555431 0000 010 1 2345777555555
Q ss_pred EEEEEcC------CeEEEEECCCCeEEEEec---------------CCCCCeEEEEEcCCCCEEEEEeCC--------e-
Q 002519 773 YLAAAAE------NVVSILDAETQACRLSLQ---------------GHTKPIDSVCWDPSGELLASVSED--------S- 822 (913)
Q Consensus 773 ll~~~~d------g~I~i~D~~t~~~~~~l~---------------~h~~~V~sl~~spdg~~l~s~s~d--------~- 822 (913)
+++.-.+ ..|+.+|.. ++.+..+. .....+.+++++|+|+.|+++.+. .
T Consensus 99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~ 177 (326)
T PF13449_consen 99 WISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRAN 177 (326)
T ss_pred EEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcccc
Confidence 5555556 688888876 54443331 123468899999999966655321 1
Q ss_pred ------EEEEECCCCC----CCceEEEeec-----CCCceEEEEEeCCCCEEEEE
Q 002519 823 ------VRVWTVGSGS----EGECVHELSC-----NGNKFHSCVFHPTYPSLLVI 862 (913)
Q Consensus 823 ------I~vwdl~~~~----~~~~i~~~~~-----~~~~i~~l~~sp~g~~l~s~ 862 (913)
++|+.+.... .......+.. ....+..+.+-+++++++.=
T Consensus 178 ~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLE 232 (326)
T PF13449_consen 178 PDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLE 232 (326)
T ss_pred cccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEE
Confidence 5565554322 1122333332 45778899999999865543
No 460
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=93.52 E-value=18 Score=41.84 Aligned_cols=59 Identities=14% Similarity=0.139 Sum_probs=41.1
Q ss_pred eecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCce--eeEec-----cCCCCeEEEEECCCC
Q 002519 629 VRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKS--KTNLE-----EHSSLITDVRFSPSM 687 (913)
Q Consensus 629 l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~--~~~l~-----~h~~~V~~l~fspdg 687 (913)
+-..-..-+.|+|.|||++|++--..|.|++++..++.. +..+. ........|+|+|+-
T Consensus 25 va~GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 25 LLSGLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred EECCCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 444566789999999998887765579999998654432 21121 135678999999874
No 461
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=93.50 E-value=7.6 Score=43.43 Aligned_cols=40 Identities=15% Similarity=0.170 Sum_probs=22.4
Q ss_pred eEEEEECCCCcEEEEcccCCCe-EEEEEeCCCCEEEEEeCC
Q 002519 867 SLELWNMSENKTMTLTAHEGLI-AALAVSTETGYVASASHD 906 (913)
Q Consensus 867 ~I~iwd~~~~~~~~~~~h~~~V-~~l~~spdg~~Lasgs~D 906 (913)
.+.+||..+.+-..+....... .+.+..-++++++.|+.+
T Consensus 291 ~~e~yd~~~~~W~~~~~lp~~~~~~~~~~~~~~iyv~GG~~ 331 (346)
T TIGR03547 291 SSEVYALDNGKWSKVGKLPQGLAYGVSVSWNNGVLLIGGEN 331 (346)
T ss_pred EeeEEEecCCcccccCCCCCCceeeEEEEcCCEEEEEeccC
Confidence 5778888776544332222221 223344577788888765
No 462
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=93.47 E-value=3.8 Score=47.28 Aligned_cols=267 Identities=14% Similarity=0.057 Sum_probs=122.5
Q ss_pred CCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCC-CCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCcee
Q 002519 633 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHS-SLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSL 711 (913)
Q Consensus 633 ~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~-~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~ 711 (913)
..+|.++.|+..| .|-+|+.|| +..||..+++.+..-...- ..|..+..+-.+ .|..|+++| |++.+.+.....-
T Consensus 164 d~~V~aLv~D~~g-~lWvgT~dG-L~~fd~~~gkalql~s~~~dk~I~al~~d~qg-~LWVGTdqG-v~~~e~~G~~~sn 239 (671)
T COG3292 164 DTPVVALVFDANG-RLWVGTPDG-LSYFDAGRGKALQLASPPLDKAINALIADVQG-RLWVGTDQG-VYLQEAEGWRASN 239 (671)
T ss_pred CccceeeeeeccC-cEEEecCCc-ceEEccccceEEEcCCCcchhhHHHHHHHhcC-cEEEEeccc-eEEEchhhccccc
Confidence 4578888888888 455566666 6667777776555443332 556655554444 677777777 7777765411110
Q ss_pred EEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEE-ee--CCceE-E-EEecCCCEEEEEEcCCeEEEEE
Q 002519 712 RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV-FK--GGTAQ-M-RFQPHLGRYLAAAAENVVSILD 786 (913)
Q Consensus 712 ~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~-~~--~~~~~-v-~~s~~~~~ll~~~~dg~I~i~D 786 (913)
.-..-....|..+.-...|. +..|++.|..+. .......... .+ ...+. . -+....+.+.+++.++.+++-+
T Consensus 240 ~~~~lp~~~I~ll~qD~qG~--lWiGTenGl~r~-~l~rq~Lq~~~~~~~l~~S~vnsL~~D~dGsLWv~t~~giv~~~~ 316 (671)
T COG3292 240 WGPMLPSGNILLLVQDAQGE--LWIGTENGLWRT-RLPRQGLQIPLSKMHLGVSTVNSLWLDTDGSLWVGTYGGIVRYLT 316 (671)
T ss_pred cCCCCcchheeeeecccCCC--EEEeecccceeE-ecCCCCccccccccCCccccccceeeccCCCEeeeccCceEEEec
Confidence 11111233444444333433 334555554433 2222221111 11 11111 1 1223345666777777666654
Q ss_pred CCCCeEEEEecCCCC-CeEEEEEcC---CCCEEEEEeCCeEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEEE
Q 002519 787 AETQACRLSLQGHTK-PIDSVCWDP---SGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVI 862 (913)
Q Consensus 787 ~~t~~~~~~l~~h~~-~V~sl~~sp---dg~~l~s~s~d~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~ 862 (913)
..- .....+....+ .+-.++..| +.......+.+.+.+-+-.++.....++.. .+..|+.+++..++ .+..+
T Consensus 317 a~w-~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns~g~L~van~stG~~v~sv~q~--Rg~nit~~~~d~~g-~lWlg 392 (671)
T COG3292 317 ADW-KRMAVINDSDGGVSQYEAVAPALLSWGVRQLNSIGELMVANGSTGELVRSVHQL--RGMNITTTLEDSRG-RLWLG 392 (671)
T ss_pred chh-hheeeeecCCCchhhhhccCchhcccceeeccccceEEEecCCCCcEEEEeeec--cccccchhhhccCC-cEEEE
Confidence 431 11111111100 111111111 000000001111111111222111111111 23456666666644 46666
Q ss_pred EcCCeEEEEECCC-CcEEEEc--ccCCCeEEEEEeCCCCEEEEEeCCCcEEE
Q 002519 863 GCYQSLELWNMSE-NKTMTLT--AHEGLIAALAVSTETGYVASASHDKFVKL 911 (913)
Q Consensus 863 s~dg~I~iwd~~~-~~~~~~~--~h~~~V~~l~~spdg~~Lasgs~DG~I~I 911 (913)
+..+-+..|+..+ +..+... ...+.|..+.-.|+++ |..|+.+|.+++
T Consensus 393 s~q~GLsrl~n~n~~avlde~agl~ss~V~aived~dns-LWIGTs~Glvk~ 443 (671)
T COG3292 393 SMQNGLSRLDNKNEWAVLDEDAGLPSSEVSAIVEDPDNS-LWIGTSGGLVKR 443 (671)
T ss_pred ecccchhhhccCCcccccccccCCcccceeeeeecCCCC-EEEeccCCeEec
Confidence 6665666677666 3333222 2456788888888888 666777877653
No 463
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=93.32 E-value=8.9 Score=43.51 Aligned_cols=14 Identities=7% Similarity=0.145 Sum_probs=10.0
Q ss_pred cEEEEEcCCCeeeE
Q 002519 742 EIRYWSINNGSCTR 755 (913)
Q Consensus 742 ~I~iwdl~~~~~~~ 755 (913)
.|.+||..+.+...
T Consensus 190 ~v~~YD~~t~~W~~ 203 (376)
T PRK14131 190 EVLSYDPSTNQWKN 203 (376)
T ss_pred eEEEEECCCCeeeE
Confidence 58889988766543
No 464
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.21 E-value=6.6 Score=46.81 Aligned_cols=175 Identities=12% Similarity=0.219 Sum_probs=88.3
Q ss_pred CeEEEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEE------eeCCceEEEEecCC
Q 002519 697 KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV------FKGGTAQMRFQPHL 770 (913)
Q Consensus 697 g~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~------~~~~~~~v~~s~~~ 770 (913)
-.|+||++. |..+..+.-....+..+.|+.+. .|| +...+|++++|++-....... ....+..+.+.. +
T Consensus 64 ~~I~If~~s--G~lL~~~~w~~~~lI~mgWs~~e-eLI-~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~-~ 138 (829)
T KOG2280|consen 64 PYIRIFNIS--GQLLGRILWKHGELIGMGWSDDE-ELI-CVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFH-N 138 (829)
T ss_pred eeEEEEecc--ccchHHHHhcCCCeeeecccCCc-eEE-EEeccceEEEeecchhhhcccccccccccCceeEEEEec-C
Confidence 458888876 44444444334478889999764 355 667899999999864332221 111222233333 2
Q ss_pred CEEEEEEcCCeEEEEECCCCeEEEEecC-CCCCeEEEEEc--CCC-C--EEEEEeCC-eEEEEECCCCCCCceEEEeecC
Q 002519 771 GRYLAAAAENVVSILDAETQACRLSLQG-HTKPIDSVCWD--PSG-E--LLASVSED-SVRVWTVGSGSEGECVHELSCN 843 (913)
Q Consensus 771 ~~ll~~~~dg~I~i~D~~t~~~~~~l~~-h~~~V~sl~~s--pdg-~--~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~ 843 (913)
+ +++-..+|.|.+..-.....++++.. ......+.||. +++ . .++-...- ...++-.... ....+.+...
T Consensus 139 G-Vavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~--~~q~~~~~~~ 215 (829)
T KOG2280|consen 139 G-VAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEES--RVQLHALSWP 215 (829)
T ss_pred c-eEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecc--cccccccCCC
Confidence 3 33444445444443322222222222 11111112222 221 1 11111100 1112222111 1112222222
Q ss_pred CCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE
Q 002519 844 GNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM 879 (913)
Q Consensus 844 ~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~ 879 (913)
...+..|.++|+.++|+.-..+|.|.+-+++..+++
T Consensus 216 ~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~l 251 (829)
T KOG2280|consen 216 NSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQIL 251 (829)
T ss_pred CceEEEEEEcCCcceEEEEecCCcEEEEecchhhhh
Confidence 466888999999999999999999999988766654
No 465
>PLN02193 nitrile-specifier protein
Probab=93.14 E-value=8.1 Score=45.30 Aligned_cols=148 Identities=6% Similarity=-0.059 Sum_probs=72.2
Q ss_pred CCeEEEEEeCC-----CcEEEEEcCCCeeeEEeeC-----Cce-EEEEecCCCEEEEEEcC-----CeEEEEECCCCeEE
Q 002519 730 KDDLICSCDGD-----GEIRYWSINNGSCTRVFKG-----GTA-QMRFQPHLGRYLAAAAE-----NVVSILDAETQACR 793 (913)
Q Consensus 730 ~~~ll~sgs~D-----g~I~iwdl~~~~~~~~~~~-----~~~-~v~~s~~~~~ll~~~~d-----g~I~i~D~~t~~~~ 793 (913)
++.+++.|+.+ ..+.+||+.+.+....... ... ......++..++.++.+ ..+..||+.+.+-.
T Consensus 228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~ 307 (470)
T PLN02193 228 GSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWF 307 (470)
T ss_pred CCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEE
Confidence 34566677654 4588899887765432211 111 11222334445555543 35778888776433
Q ss_pred EEec-----CCCCCeEEEEEcCCCCEEEEEeC-----CeEEEEECCCCCCCceEEEee--cCCCceEEEEEeCCCCEEEE
Q 002519 794 LSLQ-----GHTKPIDSVCWDPSGELLASVSE-----DSVRVWTVGSGSEGECVHELS--CNGNKFHSCVFHPTYPSLLV 861 (913)
Q Consensus 794 ~~l~-----~h~~~V~sl~~spdg~~l~s~s~-----d~I~vwdl~~~~~~~~i~~~~--~~~~~i~~l~~sp~g~~l~s 861 (913)
..-. ..... ..++. -++++++.++. +.+.+||+.+.. ...+.... .......++ ..-+++.++.
T Consensus 308 ~~~~~~~~~~~R~~-~~~~~-~~gkiyviGG~~g~~~~dv~~yD~~t~~-W~~~~~~g~~P~~R~~~~~-~~~~~~iyv~ 383 (470)
T PLN02193 308 HCSTPGDSFSIRGG-AGLEV-VQGKVWVVYGFNGCEVDDVHYYDPVQDK-WTQVETFGVRPSERSVFAS-AAVGKHIVIF 383 (470)
T ss_pred eCCCCCCCCCCCCC-cEEEE-ECCcEEEEECCCCCccCceEEEECCCCE-EEEeccCCCCCCCcceeEE-EEECCEEEEE
Confidence 2110 01111 12222 25666666553 268899987642 12221110 001112222 2335566666
Q ss_pred EEcC--------------CeEEEEECCCCcEEEE
Q 002519 862 IGCY--------------QSLELWNMSENKTMTL 881 (913)
Q Consensus 862 ~s~d--------------g~I~iwd~~~~~~~~~ 881 (913)
|+.+ ..+.+||+.+.+-..+
T Consensus 384 GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~ 417 (470)
T PLN02193 384 GGEIAMDPLAHVGPGQLTDGTFALDTETLQWERL 417 (470)
T ss_pred CCccCCccccccCccceeccEEEEEcCcCEEEEc
Confidence 6643 2578899888765533
No 466
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=93.05 E-value=0.29 Score=37.24 Aligned_cols=31 Identities=23% Similarity=0.348 Sum_probs=28.5
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEEcC
Q 002519 675 SSLITDVRFSPSMPRLATSSFDKTVRVWDAD 705 (913)
Q Consensus 675 ~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~ 705 (913)
...|.+++|+|...+||.++.||.|.||.++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 3569999999999999999999999999994
No 467
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=92.99 E-value=3.4 Score=42.20 Aligned_cols=55 Identities=15% Similarity=0.162 Sum_probs=39.9
Q ss_pred EecCC-CEEEEEEcCCeEEEEECCC--CeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC
Q 002519 766 FQPHL-GRYLAAAAENVVSILDAET--QACRLSLQGHTKPIDSVCWDPSGELLASVSED 821 (913)
Q Consensus 766 ~s~~~-~~ll~~~~dg~I~i~D~~t--~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d 821 (913)
+...+ +.++++.....|.+|++.. ...+.+|.. -+.|..+.++..|+||++--++
T Consensus 23 ~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k 80 (215)
T PF14761_consen 23 VCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEK 80 (215)
T ss_pred eeccCCceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEee
Confidence 33334 5666667788899999883 355566653 3788999999999999987544
No 468
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=92.92 E-value=7.2 Score=44.27 Aligned_cols=39 Identities=15% Similarity=0.164 Sum_probs=19.8
Q ss_pred EEEEECCCCcEEEEcccCC-CeEEEEEeCCCCEEEEEeCC
Q 002519 868 LELWNMSENKTMTLTAHEG-LIAALAVSTETGYVASASHD 906 (913)
Q Consensus 868 I~iwd~~~~~~~~~~~h~~-~V~~l~~spdg~~Lasgs~D 906 (913)
+.+||..+.+-..+..-.. .-...+..-++++++.|+..
T Consensus 314 ~e~yd~~~~~W~~~~~lp~~r~~~~av~~~~~iyv~GG~~ 353 (376)
T PRK14131 314 DEIYALVNGKWQKVGELPQGLAYGVSVSWNNGVLLIGGET 353 (376)
T ss_pred hheEEecCCcccccCcCCCCccceEEEEeCCEEEEEcCCC
Confidence 5678887765432221111 11122344566777777753
No 469
>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]
Probab=92.90 E-value=13 Score=38.60 Aligned_cols=191 Identities=17% Similarity=0.199 Sum_probs=103.7
Q ss_pred EEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEE--CCCCC--EEEEEeC--CCeEEEEEcCCCCc
Q 002519 636 VICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRF--SPSMP--RLATSSF--DKTVRVWDADNPGY 709 (913)
Q Consensus 636 V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~f--spdg~--~Lasgs~--Dg~V~Iwdl~~~~~ 709 (913)
|+--+-+|+...+++....+-++|||+. ++.+..+....-.-.++.+ --.|. .|+.+|. ..+|.+|.++....
T Consensus 58 IwVh~t~P~kS~vItt~Kk~Gl~VYDLs-GkqLqs~~~Gk~NNVDLrygF~LgG~~idiaaASdR~~~~i~~y~Idp~~~ 136 (364)
T COG4247 58 IWVHATNPDKSLVITTVKKAGLRVYDLS-GKQLQSVNPGKYNNVDLRYGFQLGGQSIDIAAASDRQNDKIVFYKIDPNPQ 136 (364)
T ss_pred eEeccCCcCcceEEEeeccCCeEEEecC-CCeeeecCCCcccccccccCcccCCeEEEEEecccccCCeEEEEEeCCCcc
Confidence 3333445777788888888899999986 4445554432211112222 11233 3455554 46788998886554
Q ss_pred eeEEeccC-------CCCeEEEEEcC--C-CCeEEEEEeCCCcEEEEEcCC-------CeeeEEeeCCc--eEEEEecCC
Q 002519 710 SLRTFMGH-------SASVMSLDFHP--N-KDDLICSCDGDGEIRYWSINN-------GSCTRVFKGGT--AQMRFQPHL 770 (913)
Q Consensus 710 ~~~~~~~h-------~~~V~sl~fsp--~-~~~ll~sgs~Dg~I~iwdl~~-------~~~~~~~~~~~--~~v~~s~~~ 770 (913)
.+..+... ...+..++... . +..++++...+|.|.-|.+.. .+.++.|+... ..+......
T Consensus 137 ~L~sitD~n~p~ss~~s~~YGl~lyrs~ktgd~yvfV~~~qG~~~Qy~l~d~gnGkv~~k~vR~fk~~tQTEG~VaDdEt 216 (364)
T COG4247 137 YLESITDSNAPYSSSSSSAYGLALYRSPKTGDYYVFVNRRQGDIAQYKLIDQGNGKVGTKLVRQFKIPTQTEGMVADDET 216 (364)
T ss_pred ceeeccCCCCccccCcccceeeEEEecCCcCcEEEEEecCCCceeEEEEEecCCceEcceeeEeeecCCcccceeecccc
Confidence 45444432 23455566543 3 566777888899998887743 23455555432 223333333
Q ss_pred CEEEEEEcCCeEEEEECC-------CCeEEEEecC---CCCCeE--EEEEcCCCC-EEEEEeCC--eEEEEECC
Q 002519 771 GRYLAAAAENVVSILDAE-------TQACRLSLQG---HTKPID--SVCWDPSGE-LLASVSED--SVRVWTVG 829 (913)
Q Consensus 771 ~~ll~~~~dg~I~i~D~~-------t~~~~~~l~~---h~~~V~--sl~~spdg~-~l~s~s~d--~I~vwdl~ 829 (913)
+.+..+-.| +.||..+ +++.+.++.+ -...|. .|-+-|+|+ ||+..+.+ +..+|...
T Consensus 217 G~LYIaeEd--vaiWK~~Aep~~G~~g~~idr~~d~~~LtdDvEGltiYy~pnGkGYL~aSSQGnNtya~y~Re 288 (364)
T COG4247 217 GFLYIAEED--VAIWKYEAEPNRGNTGRLIDRIKDLSYLTDDVEGLTIYYGPNGKGYLLASSQGNNTYAAYTRE 288 (364)
T ss_pred ceEEEeecc--ceeeecccCCCCCCccchhhhhcCchhhcccccccEEEEcCCCcEEEEEecCCCceEEEEEee
Confidence 445444444 4555432 2334433332 122232 456778888 66666655 66666543
No 470
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=92.87 E-value=21 Score=42.26 Aligned_cols=224 Identities=15% Similarity=0.161 Sum_probs=107.2
Q ss_pred CCCCCEEEEEeCCCeEEEEEcCCCCc-eeEEeccC-CCCeEEEEEcCCCCeEEEEEeC--CCcEEEEEcCCCeeeEEee-
Q 002519 684 SPSMPRLATSSFDKTVRVWDADNPGY-SLRTFMGH-SASVMSLDFHPNKDDLICSCDG--DGEIRYWSINNGSCTRVFK- 758 (913)
Q Consensus 684 spdg~~Lasgs~Dg~V~Iwdl~~~~~-~~~~~~~h-~~~V~sl~fsp~~~~ll~sgs~--Dg~I~iwdl~~~~~~~~~~- 758 (913)
..++..++.+..+|.+....+...+. ......+. .....++++..++..+++.|+. |+.+..|....-+++..+.
T Consensus 219 ~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~~N 298 (504)
T PF10433_consen 219 DKDGDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSLPN 298 (504)
T ss_dssp STTSSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEEE--
T ss_pred cCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEeccC
Confidence 45677899999999999888875332 12222233 5566778887766345556665 5556666644445555554
Q ss_pred -CCceEEEEecC----CC------EEEEEEc---CCeEEEEECCCCeE--EEEecCC--CCCeEEEEEcC-CCCEEEEEe
Q 002519 759 -GGTAQMRFQPH----LG------RYLAAAA---ENVVSILDAETQAC--RLSLQGH--TKPIDSVCWDP-SGELLASVS 819 (913)
Q Consensus 759 -~~~~~v~~s~~----~~------~ll~~~~---dg~I~i~D~~t~~~--~~~l~~h--~~~V~sl~~sp-dg~~l~s~s 819 (913)
+++..+++... .. .+++++. +|.++++.---+-. ....... -..++.+.... ++.+|+...
T Consensus 299 ~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~Gi~~~~~~~~~~~l~~v~~iW~l~~~~~~~~~lv~S~ 378 (504)
T PF10433_consen 299 WGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNGIGIEGLELASSELPGVTGIWTLKLSSSDHSYLVLSF 378 (504)
T ss_dssp --SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEESBEEE--EEEEEEESTEEEEEEE-SSSSSBSEEEEEE
T ss_pred cCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEeccCCceeeeeeccCCCCceEEEEeeecCCCceEEEEEc
Confidence 35555555421 12 6666654 67888774321111 1111111 22344444322 256888887
Q ss_pred CCeEEEEECCCCCCCceEEEe-----ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEE--cccCCCeEEEE
Q 002519 820 EDSVRVWTVGSGSEGECVHEL-----SCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTL--TAHEGLIAALA 892 (913)
Q Consensus 820 ~d~I~vwdl~~~~~~~~i~~~-----~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~--~~h~~~V~~l~ 892 (913)
.+.-+|+.+..++....+.++ ......+.+..+. +..++=.+. ..|++.+....+.... ......|.+.+
T Consensus 379 ~~~T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~--~~~ivQVt~-~~i~l~~~~~~~~~~~w~~~~~~~I~~a~ 455 (504)
T PF10433_consen 379 PNETRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVG--DGRIVQVTP-KGIRLIDLEDGKLTQEWKPPAGSIIVAAS 455 (504)
T ss_dssp SSEEEEEEES----SSEEEEE---TS-SSS-EEEEEEET--TTEEEEEES-SEEEEEESSSTSEEEEEE-TTS---SEEE
T ss_pred CCceEEEEEecccCCcchhhhhhccCCCCCCCeEEEEcC--CCeEEEEec-CeEEEEECCCCeEEEEEeCCCCCeEEEEE
Confidence 775566666421111222221 1112222222222 333333333 4588888777766632 23444555555
Q ss_pred EeCCCCEEEEEeCCCcEEEe
Q 002519 893 VSTETGYVASASHDKFVKLW 912 (913)
Q Consensus 893 ~spdg~~Lasgs~DG~I~IW 912 (913)
+.. .+++.+-.++.+.++
T Consensus 456 ~~~--~~v~v~~~~~~~~~~ 473 (504)
T PF10433_consen 456 IND--PQVLVALSGGELVYF 473 (504)
T ss_dssp ESS--SEEEEEE-TTEEEEE
T ss_pred ECC--CEEEEEEeCCcEEEE
Confidence 433 355555556666554
No 471
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.48 E-value=12 Score=42.73 Aligned_cols=79 Identities=20% Similarity=0.223 Sum_probs=48.0
Q ss_pred CeEEEEECCCCCEEEEEeCCCeEEEEEcCC--------CCcee---EEe-------c-cCCCCeEEEEEcCCC--CeEEE
Q 002519 677 LITDVRFSPSMPRLATSSFDKTVRVWDADN--------PGYSL---RTF-------M-GHSASVMSLDFHPNK--DDLIC 735 (913)
Q Consensus 677 ~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~--------~~~~~---~~~-------~-~h~~~V~sl~fsp~~--~~ll~ 735 (913)
.|..|..++.|..++-.+.+|.+..+=.+. .++.+ +++ . ...-.+.-++|+|+. +..+.
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~ 184 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV 184 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence 477788899999999999999654432111 11111 111 1 112235557788875 44444
Q ss_pred EEeCCCcEEEEEcCCCeeeE
Q 002519 736 SCDGDGEIRYWSINNGSCTR 755 (913)
Q Consensus 736 sgs~Dg~I~iwdl~~~~~~~ 755 (913)
.-..|..||+||+...+.+.
T Consensus 185 iL~sdnviRiy~lS~~tely 204 (741)
T KOG4460|consen 185 LLTSDNVIRIYSLSEPTELY 204 (741)
T ss_pred EEecCcEEEEEecCCcchhh
Confidence 66678899999887665553
No 472
>PLN02153 epithiospecifier protein
Probab=92.47 E-value=7.1 Score=43.60 Aligned_cols=40 Identities=3% Similarity=0.006 Sum_probs=21.2
Q ss_pred CeEEEEECCCCcEEEEccc----CCCeEEEEEeCCCCEEEEEeC
Q 002519 866 QSLELWNMSENKTMTLTAH----EGLIAALAVSTETGYVASASH 905 (913)
Q Consensus 866 g~I~iwd~~~~~~~~~~~h----~~~V~~l~~spdg~~Lasgs~ 905 (913)
..|.+||..+.+-..+... .......+...++++++.|+.
T Consensus 217 ~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~~~~~iyv~GG~ 260 (341)
T PLN02153 217 NAVQFFDPASGKWTEVETTGAKPSARSVFAHAVVGKYIIIFGGE 260 (341)
T ss_pred CceEEEEcCCCcEEeccccCCCCCCcceeeeEEECCEEEEECcc
Confidence 4688999888765544321 111111122335667777774
No 473
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=92.38 E-value=23 Score=43.18 Aligned_cols=61 Identities=21% Similarity=0.294 Sum_probs=41.3
Q ss_pred eccCCCCeEEEEECCCCCEEEEEeCCC--eEEEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEE
Q 002519 671 LEEHSSLITDVRFSPSMPRLATSSFDK--TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLIC 735 (913)
Q Consensus 671 l~~h~~~V~~l~fspdg~~Lasgs~Dg--~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~ 735 (913)
...+...+..+.|+|++..++..+.++ ...+|-+...+ .+..+...|..+.|++++..+++
T Consensus 55 ~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~l~l~~~~g----~~~~~~~~v~~~~~~~~g~~~~~ 117 (620)
T COG1506 55 LLTFGGGVSELRWSPDGSVLAFVSTDGGRVAQLYLVDVGG----LITKTAFGVSDARWSPDGDRIAF 117 (620)
T ss_pred ccccCCcccccccCCCCCEEEEEeccCCCcceEEEEecCC----ceeeeecccccceeCCCCCeEEE
Confidence 445677889999999999998888433 24555554322 33345566777888888877664
No 474
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=92.29 E-value=4.3 Score=38.21 Aligned_cols=116 Identities=11% Similarity=0.126 Sum_probs=73.0
Q ss_pred EEEEECCCCCEEEEEeCCCeEEEEEcCCCC-------ceeEEeccCCCCeEEEEEcC----CCCeEEEEEeCCCcEEEEE
Q 002519 679 TDVRFSPSMPRLATSSFDKTVRVWDADNPG-------YSLRTFMGHSASVMSLDFHP----NKDDLICSCDGDGEIRYWS 747 (913)
Q Consensus 679 ~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~-------~~~~~~~~h~~~V~sl~fsp----~~~~ll~sgs~Dg~I~iwd 747 (913)
..-+|......|++++.-|+|.|++..... ..++. ..-...|++|+-.+ ++..+|+.|+ ...|..||
T Consensus 2 aiGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~-LNin~~italaaG~l~~~~~~D~LliGt-~t~llaYD 79 (136)
T PF14781_consen 2 AIGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISF-LNINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYD 79 (136)
T ss_pred eEEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeE-EECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEE
Confidence 344666666789999999999999876422 12233 33556778776443 2344665555 67899999
Q ss_pred cCCCeee--EEeeCCceEEEEec---CCCEEEEEEcCCeEEEEECCCCeEEEEe
Q 002519 748 INNGSCT--RVFKGGTAQMRFQP---HLGRYLAAAAENVVSILDAETQACRLSL 796 (913)
Q Consensus 748 l~~~~~~--~~~~~~~~~v~~s~---~~~~ll~~~~dg~I~i~D~~t~~~~~~l 796 (913)
+.....+ +.+..++.++.+-. ....++..+.+..|.-||.+..+..++.
T Consensus 80 V~~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWtV 133 (136)
T PF14781_consen 80 VENNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWTV 133 (136)
T ss_pred cccCchhhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEEe
Confidence 9876543 34556666665532 2245666666677777777665555443
No 475
>PHA02790 Kelch-like protein; Provisional
Probab=92.28 E-value=4.9 Score=47.28 Aligned_cols=167 Identities=9% Similarity=-0.072 Sum_probs=78.8
Q ss_pred CeEEEEEeCC-----CcEEEEEcCCCeeeEEe--eCCc-eEEEEecCCCEEEEEEcC--CeEEEEECCCCeEEE--EecC
Q 002519 731 DDLICSCDGD-----GEIRYWSINNGSCTRVF--KGGT-AQMRFQPHLGRYLAAAAE--NVVSILDAETQACRL--SLQG 798 (913)
Q Consensus 731 ~~ll~sgs~D-----g~I~iwdl~~~~~~~~~--~~~~-~~v~~s~~~~~ll~~~~d--g~I~i~D~~t~~~~~--~l~~ 798 (913)
+.++++|+.+ ..+..||..+.+....- .... .......++..+++|+.+ ..+..||..+.+-.. .+..
T Consensus 272 ~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~ 351 (480)
T PHA02790 272 EVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLK 351 (480)
T ss_pred CEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCCCCceEEEECCCCeEEECCCCCC
Confidence 4566666654 25777888876543321 1111 111223344555555543 468888877654322 1211
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCC----eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 002519 799 HTKPIDSVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMS 874 (913)
Q Consensus 799 h~~~V~sl~~spdg~~l~s~s~d----~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~ 874 (913)
..... +++ .-+|++.+.|+.+ .+..||.++. ....+......... .++..-++...++| |.+.+||..
T Consensus 352 ~r~~~-~~~-~~~g~IYviGG~~~~~~~ve~ydp~~~-~W~~~~~m~~~r~~--~~~~~~~~~IYv~G---G~~e~ydp~ 423 (480)
T PHA02790 352 PRCNP-AVA-SINNVIYVIGGHSETDTTTEYLLPNHD-QWQFGPSTYYPHYK--SCALVFGRRLFLVG---RNAEFYCES 423 (480)
T ss_pred CCccc-EEE-EECCEEEEecCcCCCCccEEEEeCCCC-EEEeCCCCCCcccc--ceEEEECCEEEEEC---CceEEecCC
Confidence 11111 222 2357766776643 5778887653 11111111111111 12223345444444 357889988
Q ss_pred CCcEEEEccc--CCCeEEEEEeCCCCEEEEEeCC
Q 002519 875 ENKTMTLTAH--EGLIAALAVSTETGYVASASHD 906 (913)
Q Consensus 875 ~~~~~~~~~h--~~~V~~l~~spdg~~Lasgs~D 906 (913)
+++-..+... ...-.+++ .-++++.+.||.+
T Consensus 424 ~~~W~~~~~m~~~r~~~~~~-v~~~~IYviGG~~ 456 (480)
T PHA02790 424 SNTWTLIDDPIYPRDNPELI-IVDNKLLLIGGFY 456 (480)
T ss_pred CCcEeEcCCCCCCccccEEE-EECCEEEEECCcC
Confidence 7765533321 11111222 2466777777754
No 476
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=92.26 E-value=4.1 Score=48.59 Aligned_cols=163 Identities=16% Similarity=0.149 Sum_probs=92.0
Q ss_pred CCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCc--eeeEecc-CC------CCeEEEEECCCCCEEEEEeC-C---CeE
Q 002519 633 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK--SKTNLEE-HS------SLITDVRFSPSMPRLATSSF-D---KTV 699 (913)
Q Consensus 633 ~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~--~~~~l~~-h~------~~V~~l~fspdg~~Lasgs~-D---g~V 699 (913)
.+.|..|.|..+++.+++.-.+|.|.+||...+. .+..+.. +. .-|..........++++.+. + -.+
T Consensus 129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~y 208 (670)
T PF10395_consen 129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLSY 208 (670)
T ss_pred ccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEEE
Confidence 6789999999999999999999999999993222 2112221 11 12222222122345544444 2 246
Q ss_pred EEEEcCCCCceeEEec---cCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeCC-------ceEEEEecC
Q 002519 700 RVWDADNPGYSLRTFM---GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG-------TAQMRFQPH 769 (913)
Q Consensus 700 ~Iwdl~~~~~~~~~~~---~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~-------~~~v~~s~~ 769 (913)
+++.+......+..+. -+........|+-..+.+..- .+++|.+|++...+..+.+.-. ...+.+.+-
T Consensus 209 kL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l--~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~~~ 286 (670)
T PF10395_consen 209 KLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL--SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLKPP 286 (670)
T ss_pred EEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEE--eCCEEEEEEcCCceEEEEEEechhhccccccceEeecC
Confidence 7788832222232222 222222333333333434422 6889999999888766655432 123444444
Q ss_pred CCEEEEEEcCCeEEEEECCCCeEEEEec
Q 002519 770 LGRYLAAAAENVVSILDAETQACRLSLQ 797 (913)
Q Consensus 770 ~~~ll~~~~dg~I~i~D~~t~~~~~~l~ 797 (913)
...-+.-+.++.|++.|+.-...+.++.
T Consensus 287 s~nRvLLs~~nkIyLld~~~~siLse~~ 314 (670)
T PF10395_consen 287 SPNRVLLSVNNKIYLLDLKFESILSEFE 314 (670)
T ss_pred CCCeEEEEcCCEEEEEeehhhhhhhhhh
Confidence 4444445667899999987665555444
No 477
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=92.12 E-value=3.4 Score=49.80 Aligned_cols=168 Identities=12% Similarity=0.058 Sum_probs=0.0
Q ss_pred CCEEEEEeCCCeEEEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeCCceEEEE
Q 002519 687 MPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRF 766 (913)
Q Consensus 687 g~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~ 766 (913)
..+|+++. .+.|.||+++. ........++..+...|. .+...|+.+..|- ..-.+..+ .+..
T Consensus 49 ~n~LFiA~-~s~I~Vy~~d~-----l~~~p~~~p~~~~~t~p~-----~~~~~D~~~s~~p--~PHtIN~i-----~v~~ 110 (717)
T PF08728_consen 49 RNLLFIAY-QSEIYVYDPDG-----LTQLPSRKPCLRFDTKPE-----FTSTPDRLISTWP--FPHTINFI-----KVGD 110 (717)
T ss_pred CCEEEEEE-CCEEEEEecCC-----cccccccccccccccCcc-----ccccccccccCCC--CCceeeEE-----Eecc
Q ss_pred ecCCCEEEEEEcCCeEEEEEC--------------------CCCeEEEEecCCCCCeEEEEEc--CCCCEEEEEeCC-eE
Q 002519 767 QPHLGRYLAAAAENVVSILDA--------------------ETQACRLSLQGHTKPIDSVCWD--PSGELLASVSED-SV 823 (913)
Q Consensus 767 s~~~~~ll~~~~dg~I~i~D~--------------------~t~~~~~~l~~h~~~V~sl~~s--pdg~~l~s~s~d-~I 823 (913)
.-....|+++..||.|.+|.+ ..-++...+.... .+++++++ ...++||+++.. .|
T Consensus 111 lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~-SaWGLdIh~~~~~rlIAVSsNs~~V 189 (717)
T PF08728_consen 111 LGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGA-SAWGLDIHDYKKSRLIAVSSNSQEV 189 (717)
T ss_pred cCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCC-ceeEEEEEecCcceEEEEecCCceE
Q ss_pred EEEECCCCCCCceEEEeecCCCceEEEEEeCCC------CEEEEEEcCCeEEEEEC
Q 002519 824 RVWTVGSGSEGECVHELSCNGNKFHSCVFHPTY------PSLLVIGCYQSLELWNM 873 (913)
Q Consensus 824 ~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g------~~l~s~s~dg~I~iwd~ 873 (913)
.||-+...........-..+...|.+++|-++. ..|++++-.|.+.+|++
T Consensus 190 TVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 190 TVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
No 478
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=92.08 E-value=2.6 Score=44.35 Aligned_cols=129 Identities=16% Similarity=0.205 Sum_probs=75.1
Q ss_pred EEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC----eEEEEECCCCCC-CceEE--EeecCCCceEEEEEeC
Q 002519 782 VSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED----SVRVWTVGSGSE-GECVH--ELSCNGNKFHSCVFHP 854 (913)
Q Consensus 782 I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d----~I~vwdl~~~~~-~~~i~--~~~~~~~~i~~l~~sp 854 (913)
-.+||+.+++..-..........+-.|.+||++|.+|+.. .+++|+...... ..... .......+..+...-+
T Consensus 48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~ 127 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLP 127 (243)
T ss_pred EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECC
Confidence 4578888875543222223334445678899999998863 688888654111 11111 1112344556667778
Q ss_pred CCCEEEEEEcCC-eEEEEECCC--CcEEEE--cc------cCCCeEEEEEeCCCCEEEEEeCCCcEE
Q 002519 855 TYPSLLVIGCYQ-SLELWNMSE--NKTMTL--TA------HEGLIAALAVSTETGYVASASHDKFVK 910 (913)
Q Consensus 855 ~g~~l~s~s~dg-~I~iwd~~~--~~~~~~--~~------h~~~V~~l~~spdg~~Lasgs~DG~I~ 910 (913)
||+.|++|+... +..+|.-.. .....+ .. ....--.+...|+|++++.+..+..|.
T Consensus 128 DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s~i~ 194 (243)
T PF07250_consen 128 DGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGSIIY 194 (243)
T ss_pred CCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCcEEE
Confidence 999999998885 566666532 112211 11 111122455679999999988776554
No 479
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.02 E-value=1.5 Score=54.96 Aligned_cols=161 Identities=16% Similarity=0.267 Sum_probs=88.2
Q ss_pred eCCCcEEEEECCCCceeeEeccCCCCeEEEEE--------CCCCCEEEEEeCCCeEEEEEcCCCCc--eeE------Eec
Q 002519 652 GHDKKAVLWHTDTLKSKTNLEEHSSLITDVRF--------SPSMPRLATSSFDKTVRVWDADNPGY--SLR------TFM 715 (913)
Q Consensus 652 s~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~f--------spdg~~Lasgs~Dg~V~Iwdl~~~~~--~~~------~~~ 715 (913)
+.|+.+.+|+.+++.....+.+-+..|..|.. -|.=++|+....--.|.|+-+.-... ... .+.
T Consensus 96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~ 175 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS 175 (1311)
T ss_pred EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence 45889999999998888888888888888764 23334454444455577765532111 111 111
Q ss_pred cCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeCCceEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEE
Q 002519 716 GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLS 795 (913)
Q Consensus 716 ~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~s~~~~~ll~~~~dg~I~i~D~~t~~~~~~ 795 (913)
.....|.||....+|+ +|+ ++.||. +|.+--...-..|......++.+.. .-..+. +. +..
T Consensus 176 ~dg~~V~~I~~t~nGR-IF~-~G~dg~--lyEl~Yq~~~gWf~~rc~Kiclt~s--------~ls~lv------Ps-~~~ 236 (1311)
T KOG1900|consen 176 VDGVSVNCITYTENGR-IFF-AGRDGN--LYELVYQAEDGWFGSRCRKICLTKS--------VLSSLV------PS-LLS 236 (1311)
T ss_pred cCCceEEEEEeccCCc-EEE-eecCCC--EEEEEEeccCchhhcccccccCchh--------HHHHhh------hh-hhc
Confidence 2345688888655554 553 445664 4443211100001000111111000 000000 00 112
Q ss_pred e-cCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCC
Q 002519 796 L-QGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSG 831 (913)
Q Consensus 796 l-~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~ 831 (913)
+ ..+.++|..++++....++++-++. +|.+||+...
T Consensus 237 ~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~~ 274 (1311)
T KOG1900|consen 237 VPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGGN 274 (1311)
T ss_pred CCCCCCCcceeeEeccccceeeeeccCceEEEEEccCC
Confidence 2 2467789999999888888888887 9999999764
No 480
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=92.01 E-value=30 Score=40.60 Aligned_cols=114 Identities=15% Similarity=0.114 Sum_probs=61.4
Q ss_pred EEECCCCCEEEEEeCCCeEEEEEcCCCCceeEEeccCCC---CeEEEEEcCCCCeEEEEEe-------C-----CCcEEE
Q 002519 681 VRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSA---SVMSLDFHPNKDDLICSCD-------G-----DGEIRY 745 (913)
Q Consensus 681 l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~---~V~sl~fsp~~~~ll~sgs-------~-----Dg~I~i 745 (913)
+.+.++|.+++... ..++.+|+. ++.+..+.-... .=.++.+.|+|+.|+++.. . +..|..
T Consensus 153 ~~~l~nG~ll~~~~--~~~~e~D~~--G~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ive 228 (477)
T PF05935_consen 153 FKQLPNGNLLIGSG--NRLYEIDLL--GKVIWEYDLPGGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVE 228 (477)
T ss_dssp EEE-TTS-EEEEEB--TEEEEE-TT----EEEEEE--TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEE
T ss_pred eeEcCCCCEEEecC--CceEEEcCC--CCEEEeeecCCcccccccccEECCCCCEEEEEeecccccCCCCccEecCEEEE
Confidence 66778888877665 778888886 444444332111 1234677788876665441 0 123555
Q ss_pred EEcCCCeeeEEee------------------------------CCceEEEEecCCCEEEEEEcC-CeEEEEECCCCeEEE
Q 002519 746 WSINNGSCTRVFK------------------------------GGTAQMRFQPHLGRYLAAAAE-NVVSILDAETQACRL 794 (913)
Q Consensus 746 wdl~~~~~~~~~~------------------------------~~~~~v~~s~~~~~ll~~~~d-g~I~i~D~~t~~~~~ 794 (913)
+| .+|+.+..+. .|..++.+.+.++.+++++.. ..|..+|.++++...
T Consensus 229 vd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~W 307 (477)
T PF05935_consen 229 VD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKW 307 (477)
T ss_dssp E--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEE
T ss_pred EC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEE
Confidence 55 5555544321 145678888977888888875 489999999998888
Q ss_pred EecCC
Q 002519 795 SLQGH 799 (913)
Q Consensus 795 ~l~~h 799 (913)
.+..+
T Consensus 308 ilg~~ 312 (477)
T PF05935_consen 308 ILGPP 312 (477)
T ss_dssp EES-S
T ss_pred EeCCC
Confidence 77654
No 481
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=91.95 E-value=8.4 Score=47.55 Aligned_cols=130 Identities=9% Similarity=0.028 Sum_probs=74.2
Q ss_pred CCcEEEEEcCC-Ceee---EEeeCCceEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecC--CCCCeEEEEEcCCCC
Q 002519 740 DGEIRYWSINN-GSCT---RVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQG--HTKPIDSVCWDPSGE 813 (913)
Q Consensus 740 Dg~I~iwdl~~-~~~~---~~~~~~~~~v~~s~~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~--h~~~V~sl~~spdg~ 813 (913)
+|.++.|++-. ++.+ ....-.....+..+..+ .+.++....+++||+-..+.++..+. ....|..+++. +.
T Consensus 911 ~g~~ytyk~~~~g~~lellh~T~~~~~v~Ai~~f~~-~~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~--~~ 987 (1205)
T KOG1898|consen 911 SGFVYTYKFVRNGDKLELLHKTEIPGPVGAICPFQG-RVLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTY--GA 987 (1205)
T ss_pred CCceEEEEEEecCceeeeeeccCCCccceEEeccCC-EEEEecccEEEEeeCChHHHHhhhhhccCceEEEEEeec--ce
Confidence 45566666532 3322 22222333456677767 44556678999999988766554332 34567777774 55
Q ss_pred EEEEEeCC-eEEEEECCCCCCCceEEEee--cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 002519 814 LLASVSED-SVRVWTVGSGSEGECVHELS--CNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSE 875 (913)
Q Consensus 814 ~l~s~s~d-~I~vwdl~~~~~~~~i~~~~--~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~ 875 (913)
.|++|... +|.++..+.... .+..+- .-...|+++.+ -|...++.+..-|.+.+..+..
T Consensus 988 RI~VgD~qeSV~~~~y~~~~n--~l~~fadD~~pR~Vt~~~~-lD~~tvagaDrfGNi~~vR~P~ 1049 (1205)
T KOG1898|consen 988 RIVVGDIQESVHFVRYRREDN--QLIVFADDPVPRHVTALEL-LDYDTVAGADRFGNIAVVRIPP 1049 (1205)
T ss_pred EEEEeeccceEEEEEEecCCC--eEEEEeCCCccceeeEEEE-ecCCceeeccccCcEEEEECCC
Confidence 66666554 666665554332 222222 22334555444 3555688888888888876643
No 482
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=91.94 E-value=24 Score=39.34 Aligned_cols=62 Identities=6% Similarity=-0.008 Sum_probs=30.1
Q ss_pred CCCEEEEEeCC-CcEEEEECCC----CceeeEecc-CCCCeEEEEECCCCCEEEEEeCC-----------CeEEEEEcCC
Q 002519 644 DGKLLATGGHD-KKAVLWHTDT----LKSKTNLEE-HSSLITDVRFSPSMPRLATSSFD-----------KTVRVWDADN 706 (913)
Q Consensus 644 dg~~Lasgs~D-g~V~vwd~~~----~~~~~~l~~-h~~~V~~l~fspdg~~Lasgs~D-----------g~V~Iwdl~~ 706 (913)
++++.++|+.. ..+.++|++. ...+..+.. .......+. -++++.+.|+.+ ..+..||..+
T Consensus 17 ~~~vyv~GG~~~~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~--~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~ 94 (346)
T TIGR03547 17 GDKVYVGLGSAGTSWYKLDLKKPSKGWQKIADFPGGPRNQAVAAA--IDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKK 94 (346)
T ss_pred CCEEEEEccccCCeeEEEECCCCCCCceECCCCCCCCcccceEEE--ECCEEEEEeCCCCCCCCCcceecccEEEEECCC
Confidence 45555555543 4567777632 222222221 111122222 256677777753 2477788776
Q ss_pred C
Q 002519 707 P 707 (913)
Q Consensus 707 ~ 707 (913)
.
T Consensus 95 ~ 95 (346)
T TIGR03547 95 N 95 (346)
T ss_pred C
Confidence 3
No 483
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=91.82 E-value=23 Score=38.84 Aligned_cols=195 Identities=10% Similarity=0.048 Sum_probs=91.4
Q ss_pred CCCCEEEEEEecCCCEEEEEe-CCCcEEEEECCCCce---------------eeEeccCCCCeEEEEECCCC-CEEEEEe
Q 002519 632 STSKVICCHFSSDGKLLATGG-HDKKAVLWHTDTLKS---------------KTNLEEHSSLITDVRFSPSM-PRLATSS 694 (913)
Q Consensus 632 H~~~V~~l~fspdg~~Lasgs-~Dg~V~vwd~~~~~~---------------~~~l~~h~~~V~~l~fspdg-~~Lasgs 694 (913)
+...|+++...+.-..|++-+ ....++++++..... ....-.|............. ..++++.
T Consensus 41 ~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A 120 (302)
T smart00036 41 GRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLVIRKNVLTKIPDTKGCHLCAVVNGKRSLFLCVA 120 (302)
T ss_pred CcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCccccccccceEeCCcCCceEEEEEEcCCCcEEEEEE
Confidence 456899999998777666654 334499999853321 01122344433333333222 2344555
Q ss_pred CCCeEEEEEcCCCCceeEEecc-------CCCCeEEEEEcCC-CCeEEEEEeCCCcEEEEEcCC--CeeeE------Eee
Q 002519 695 FDKTVRVWDADNPGYSLRTFMG-------HSASVMSLDFHPN-KDDLICSCDGDGEIRYWSINN--GSCTR------VFK 758 (913)
Q Consensus 695 ~Dg~V~Iwdl~~~~~~~~~~~~-------h~~~V~sl~fsp~-~~~ll~sgs~Dg~I~iwdl~~--~~~~~------~~~ 758 (913)
...+|.++...........++. ....+..+..+++ .+..++.|+..+...++++.. ..... ...
T Consensus 121 ~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~lcvG~~~~~~~~~~~~~~~~~~~d~sl~~~~~~ 200 (302)
T smart00036 121 LQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPGICIGSDKGGGDVVQFHESLVSKEDLSLPFLSEE 200 (302)
T ss_pred cCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccceEEEEEEcCCCCeEEEEeecccccccccccccccc
Confidence 5677777755442211111111 1123333332322 133455665543444555432 11000 000
Q ss_pred C--CceEEEEecCCCEEEEEEcCCeEEEEECCC-CeE-EEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCC
Q 002519 759 G--GTAQMRFQPHLGRYLAAAAENVVSILDAET-QAC-RLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSG 831 (913)
Q Consensus 759 ~--~~~~v~~s~~~~~ll~~~~dg~I~i~D~~t-~~~-~~~l~~h~~~V~sl~~spdg~~l~s~s~d~I~vwdl~~~ 831 (913)
. ....+...++ +.++.+..+. ..+.|... ... ...+. -.....++++. ..+|++-+.+.|.|+++.++
T Consensus 201 ~~~~p~~i~~l~~-~e~Llc~~~~-~v~Vn~~G~~~~r~~~l~-w~~~p~~~~~~--~pyll~~~~~~ievr~l~~~ 272 (302)
T smart00036 201 TSLKPISVVQVPR-DEFLLCYDEF-GVFVNLYGKRRSRNPILH-WEFMPESFAYH--SPYLLAFHDNGIEIRSIKTG 272 (302)
T ss_pred cccCceEEEEECC-CeEEEEECcE-EEEEeCCCCccccceEEE-cCCcccEEEEE--CCEEEEEcCCcEEEEECCCC
Confidence 0 1112222222 3444444433 44444443 111 11122 23445667776 46777777779999999877
No 484
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=91.62 E-value=9.4 Score=42.26 Aligned_cols=107 Identities=9% Similarity=0.069 Sum_probs=52.0
Q ss_pred CCCEEEEEeCC-----CcEEEEECCCCce---eeEecc---CCCCeEEEEECCCCCEEEEEeC-----CCeEEEEEcCCC
Q 002519 644 DGKLLATGGHD-----KKAVLWHTDTLKS---KTNLEE---HSSLITDVRFSPSMPRLATSSF-----DKTVRVWDADNP 707 (913)
Q Consensus 644 dg~~Lasgs~D-----g~V~vwd~~~~~~---~~~l~~---h~~~V~~l~fspdg~~Lasgs~-----Dg~V~Iwdl~~~ 707 (913)
++.+++.|+.+ ..|..||+.+.+- ...+.. ......++.+ ++++.+.|+. ...+.+||+.+.
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~--~~~iYv~GG~~~~~~~~~v~~yd~~~~ 149 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYK--DGTLYVGGGNRNGKPSNKSYLFNLETQ 149 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEE--CCEEEEEeCcCCCccCceEEEEcCCCC
Confidence 55677777754 3566777765442 122211 1111122222 4566666664 235888888764
Q ss_pred CceeE-EeccCCCCeEEEEEcCCCCeEEEEEeCCC----cEEEEEcCCCeee
Q 002519 708 GYSLR-TFMGHSASVMSLDFHPNKDDLICSCDGDG----EIRYWSINNGSCT 754 (913)
Q Consensus 708 ~~~~~-~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg----~I~iwdl~~~~~~ 754 (913)
..... .+.... .....+..- ++.+++.|+.++ .+.+||+++.+..
T Consensus 150 ~W~~~~~~p~~~-r~~~~~~~~-~~~iYv~GG~~~~~~~~~~~yd~~~~~W~ 199 (323)
T TIGR03548 150 EWFELPDFPGEP-RVQPVCVKL-QNELYVFGGGSNIAYTDGYKYSPKKNQWQ 199 (323)
T ss_pred CeeECCCCCCCC-CCcceEEEE-CCEEEEEcCCCCccccceEEEecCCCeeE
Confidence 33221 111111 111111112 345666777654 3568898876543
No 485
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=91.62 E-value=19 Score=45.50 Aligned_cols=24 Identities=13% Similarity=0.278 Sum_probs=14.8
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCC
Q 002519 798 GHTKPIDSVCWDPSGELLASVSED 821 (913)
Q Consensus 798 ~h~~~V~sl~~spdg~~l~s~s~d 821 (913)
+|-....++|.+|||.++++-..+
T Consensus 659 A~lnsp~alaVsPdg~v~IAD~gN 682 (1899)
T KOG4659|consen 659 AKLNSPYALAVSPDGDVIIADSGN 682 (1899)
T ss_pred cccCCcceEEECCCCcEEEecCCc
Confidence 344566777777777765554433
No 486
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=91.59 E-value=0.022 Score=63.45 Aligned_cols=141 Identities=21% Similarity=0.304 Sum_probs=95.8
Q ss_pred eEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC--eEEEEECCCCCCCceEEE
Q 002519 762 AQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSGSEGECVHE 839 (913)
Q Consensus 762 ~~v~~s~~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d--~I~vwdl~~~~~~~~i~~ 839 (913)
....|.+.+..+++++.+..|..||-...... .+. .......++|+-++..++...+. .+.+||+.+...... +
T Consensus 38 i~~~w~~e~~nlavaca~tiv~~YD~agq~~l-e~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqL--E 113 (615)
T KOG2247|consen 38 IIHRWRPEGHNLAVACANTIVIYYDKAGQVIL-ELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQL--E 113 (615)
T ss_pred ceeeEecCCCceehhhhhhHHHhhhhhcceec-ccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHH--h
Confidence 34567777777888888888888886543222 111 23445678898888855554443 899999976422111 1
Q ss_pred eecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEcc-cCCCeEEEEEeCCCCEEEEEeCCCc
Q 002519 840 LSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTA-HEGLIAALAVSTETGYVASASHDKF 908 (913)
Q Consensus 840 ~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~-h~~~V~~l~~spdg~~Lasgs~DG~ 908 (913)
+.+ ...-.-+.|++.+..++.+...|.+.||+..+.+.+...+ |...+.+++|.+.+ +++.++.|..
T Consensus 114 ~gg-~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd-~vil~dcd~~ 181 (615)
T KOG2247|consen 114 SGG-TSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLED-YVILCDCDNT 181 (615)
T ss_pred ccC-cchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccc-eeeecCcHHH
Confidence 111 1111226799999999999999999999999888776555 99999999999887 4555555543
No 487
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=91.57 E-value=8.5 Score=44.44 Aligned_cols=63 Identities=16% Similarity=0.160 Sum_probs=27.4
Q ss_pred CCEEEEEEecCCCEEEEEeCCCcEEEEECC-------CCceeeEe-ccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcC
Q 002519 634 SKVICCHFSSDGKLLATGGHDKKAVLWHTD-------TLKSKTNL-EEHSSLITDVRFSPSMPRLATSSFDKTVRVWDAD 705 (913)
Q Consensus 634 ~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~-------~~~~~~~l-~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~ 705 (913)
....+..|...|.-+++ .|..++||+.. .+.....+ .++...+.+ .+++....|.|+.|+--
T Consensus 27 ~~~~~gi~~e~g~Aw~~--~d~~l~vW~Y~~~~~s~~~~~~~~~~~~~~~~~i~~--------v~lv~p~~G~v~f~~~I 96 (422)
T PF08801_consen 27 SPCSMGIFPEIGRAWIV--VDNRLYVWNYSSTQSSPNDGSDFPLFDDGSSSSIPG--------VGLVKPKTGRVVFWESI 96 (422)
T ss_dssp TS-EEEEE-TTSEEEEE--ETTEEEEEE--SS--GG--EEEEE-----------S--------EEEEE-TT-EEEEES-T
T ss_pred cceEEEEEcccCEEEEE--ECCEEEEEeccCCCCCcCcccccceecCCCCCCCce--------EEEEEcCCCCEEecccc
Confidence 34555556555644444 37899999984 23322233 333333333 34555668889999754
Q ss_pred C
Q 002519 706 N 706 (913)
Q Consensus 706 ~ 706 (913)
.
T Consensus 97 ~ 97 (422)
T PF08801_consen 97 S 97 (422)
T ss_dssp T
T ss_pred h
Confidence 3
No 488
>PRK05560 DNA gyrase subunit A; Validated
Probab=91.47 E-value=47 Score=41.71 Aligned_cols=255 Identities=10% Similarity=0.051 Sum_probs=123.9
Q ss_pred EEecCCCEEEEEeCCCcEEEEECCCCce---------eeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEc---CCC
Q 002519 640 HFSSDGKLLATGGHDKKAVLWHTDTLKS---------KTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDA---DNP 707 (913)
Q Consensus 640 ~fspdg~~Lasgs~Dg~V~vwd~~~~~~---------~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl---~~~ 707 (913)
.+-++...+++-+.+|.|+--++.+... ...++.. ..+..+........|+..+..|.+....+ ...
T Consensus 493 dlI~~E~v~vllS~~GyIKri~~~~~~~~~~~~~g~~~~klKe~-D~l~~~~~~~t~d~LllfTs~Grv~~l~v~~iP~~ 571 (805)
T PRK05560 493 DLIPEEDVVVTLTHGGYIKRTPLDEYRAQRRGGKGVSGAKTKED-DFVEHLFVASTHDTLLFFTNRGRVYRLKVYEIPEA 571 (805)
T ss_pred hccCCCCEEEEEeCCCEEEEcchhhhhhhcccCCCccccccCCC-CeeEEEEEecCCCeEEEEecCCeEEEEEhhhCcCC
Confidence 3445677888888999998876654321 1112222 34444444455556666666777665544 321
Q ss_pred -----Ccee---EEeccCCCCeEEEEEcCC-CCeEEEEEeCCCcEEEEEcCCCe-------eeEEeeCC--ceEEEEecC
Q 002519 708 -----GYSL---RTFMGHSASVMSLDFHPN-KDDLICSCDGDGEIRYWSINNGS-------CTRVFKGG--TAQMRFQPH 769 (913)
Q Consensus 708 -----~~~~---~~~~~h~~~V~sl~fsp~-~~~ll~sgs~Dg~I~iwdl~~~~-------~~~~~~~~--~~~v~~s~~ 769 (913)
+..+ ..+.....-|.++.+... ....++..+.+|.|+.-++.... ....++.+ ...+.....
T Consensus 572 ~~~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~e~~lvlvTk~GyiKRi~l~~~~~~~r~G~~~ikLke~D~lv~v~~~~~ 651 (805)
T PRK05560 572 SRTARGRPIVNLLPLEPGEKITAILPVREFDDDKYLFFATKNGTVKKTSLSEFSNIRSNGIIAINLDEGDELIGVRLTDG 651 (805)
T ss_pred CcCCCCeEHHHhcCCCCCceEEEEEeccCCCCCCEEEEEeCCCEEEEEEhHHhhhcccCCceeeccCCCCEEEEEEEeCC
Confidence 1111 112222233444444421 23345588889999887765322 11122221 122233334
Q ss_pred CCEEEEEEcCCeEEEEECCC---------CeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCC------CC
Q 002519 770 LGRYLAAAAENVVSILDAET---------QACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSG------SE 833 (913)
Q Consensus 770 ~~~ll~~~~dg~I~i~D~~t---------~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~------~~ 833 (913)
...+++.+..|.+..+.+.. |.....+...+.-+..+.+.+++.+++..+.. .++...+... ..
T Consensus 652 ~d~lll~T~~Gr~~r~~~~eIp~~gr~~~Gv~~i~L~~~E~Vv~~~~v~~~~~~il~vTk~G~iKr~~l~e~~~~~R~~k 731 (805)
T PRK05560 652 DDDILLATKNGKAIRFPESDVRPMGRTARGVRGIKLREGDEVVSMDVVREDSQEILTVTENGYGKRTPVSEYRLQGRGGK 731 (805)
T ss_pred CCEEEEEECCCcEEEEEhhhcCccCcccCCcccccCCCCCEEEEEEEEcCCCcEEEEEEeCCeEEEEEHHHhhccCCCCC
Confidence 45677777778766665432 12222332222223334444443345555554 6666554211 11
Q ss_pred CceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEcccCCCeEEEEEeCCC
Q 002519 834 GECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTET 897 (913)
Q Consensus 834 ~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg 897 (913)
......+......+..+........+++.+.+|.+..++...-. ........|..+.+..++
T Consensus 732 G~~~lkl~~~~d~lv~v~~v~~~~~v~i~T~~G~~lrf~~~eI~--~~gR~a~GVk~I~L~~~D 793 (805)
T PRK05560 732 GVITIKITEKNGKLVGALPVDDDDEIMLITDSGKLIRTRVSEIS--ITGRNTQGVRLIRLDEGD 793 (805)
T ss_pred cEEeeeccCCCCeEEEEEEecCCCeEEEEecCCeEEEEEHHHCC--ccccCCCCeeeEecCCCC
Confidence 22222232223344444333444557777888877777765322 122234456666664443
No 489
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=91.38 E-value=2.4 Score=47.95 Aligned_cols=126 Identities=14% Similarity=0.095 Sum_probs=83.1
Q ss_pred cCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCC--------CEEEEEeCCeEEEEECCCCCCCceEEEeec--CCCce
Q 002519 778 AENVVSILDAETQACRLSLQGHTKPIDSVCWDPSG--------ELLASVSEDSVRVWTVGSGSEGECVHELSC--NGNKF 847 (913)
Q Consensus 778 ~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg--------~~l~s~s~d~I~vwdl~~~~~~~~i~~~~~--~~~~i 847 (913)
....++-.|++.|+.+.+...|... -+.|.|+. ..|+..+...|.-.|.+-......+...+. ..+.+
T Consensus 488 ~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~esKdY~tKn~F 565 (776)
T COG5167 488 ERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVESKDYKTKNKF 565 (776)
T ss_pred CcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeeehhccccccc
Confidence 3567888899999999888877665 46777753 345555555666666654432222222221 12223
Q ss_pred EEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEeCC
Q 002519 848 HSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHD 906 (913)
Q Consensus 848 ~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~Lasgs~D 906 (913)
.+..- ....+|++++..|-|++||.-..... .+.+....|..+..+.+|++|++.|..
T Consensus 566 ss~~t-TesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~ 624 (776)
T COG5167 566 SSGMT-TESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKN 624 (776)
T ss_pred ccccc-ccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecc
Confidence 33333 34458999999999999996554433 677888899999999999988776654
No 490
>KOG2109 consensus WD40 repeat protein [General function prediction only]
Probab=90.83 E-value=0.51 Score=54.76 Aligned_cols=78 Identities=18% Similarity=0.221 Sum_probs=54.1
Q ss_pred ccceeeeEeecCCCCEEEEEEecCCCEEEEEeCCC-cEEEEECCCCcee-----eEeccC-----CCCeEEEEECCCCCE
Q 002519 621 FSFKEANSVRASTSKVICCHFSSDGKLLATGGHDK-KAVLWHTDTLKSK-----TNLEEH-----SSLITDVRFSPSMPR 689 (913)
Q Consensus 621 ~~~~~~~~l~~H~~~V~~l~fspdg~~Lasgs~Dg-~V~vwd~~~~~~~-----~~l~~h-----~~~V~~l~fspdg~~ 689 (913)
.+++.+..|+.|..+|..++|.+.|.+|++++..| .|.++.+..-.+. ..+..| ...|-.|+|+....+
T Consensus 303 ~S~a~i~QfkAhkspiSaLcfdqsgsllViasi~g~nVnvfRimet~~t~~~~~qs~~~s~ra~t~aviqdicfs~~s~~ 382 (788)
T KOG2109|consen 303 DSFADIRQFKAHKSPISALCFDQSGSLLVIASITGRNVNVFRIMETVCTVNVSDQSLVVSPRANTAAVIQDICFSEVSTI 382 (788)
T ss_pred cchhhhhheeeecCcccccccccCceEEEEEeeccceeeeEEeccccccccccccccccchhcchHHHHHHHhhhhhcce
Confidence 36778888999999999999999999999988665 4666654321111 111111 233556788888888
Q ss_pred EEEEeCCCe
Q 002519 690 LATSSFDKT 698 (913)
Q Consensus 690 Lasgs~Dg~ 698 (913)
++.++.+|+
T Consensus 383 r~~gsc~Ge 391 (788)
T KOG2109|consen 383 RTAGSCEGE 391 (788)
T ss_pred EeecccCCC
Confidence 888887764
No 491
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.80 E-value=6.2 Score=50.36 Aligned_cols=227 Identities=11% Similarity=0.032 Sum_probs=105.7
Q ss_pred CCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCC-CCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCceeE
Q 002519 634 SKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHS-SLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLR 712 (913)
Q Consensus 634 ~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~-~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~ 712 (913)
.....++|++.-.++|.++.+|.|++|-..--+.+.....-. ..+..+.|-.....+.....+..+.+|.....+.+
T Consensus 36 ~~~~~~afD~~q~llai~t~tg~i~~yg~~~ve~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~-- 113 (993)
T KOG1983|consen 36 STPSALAFDPTQGLLAIGTRTGAIKIYGQPGVEFVGLHPKQNQINVTRIELLVGISRNLVLSDDDSLHLWSIKIKTGV-- 113 (993)
T ss_pred CCCcceeeccccceEEEEEecccEEEecccceEEEeccccccchhhhheeeeecccccceeecccceeeeccccccee--
Confidence 456678999999999999999999999765333222221111 12222222222223334444555666665432111
Q ss_pred EeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEe----eCCce-EEEEecCCCEEEEEEcCCeEEEEEC
Q 002519 713 TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF----KGGTA-QMRFQPHLGRYLAAAAENVVSILDA 787 (913)
Q Consensus 713 ~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~----~~~~~-~v~~s~~~~~ll~~~~dg~I~i~D~ 787 (913)
+ +...+++.... ..-.++.+ ..+.+++||+.-....... ..... ...+.+..-.+..--.+-...++-+
T Consensus 114 -~--~~~~~~~~~~~--~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 187 (993)
T KOG1983|consen 114 -F--LKQEITSFVTD--PPPDWLIG-ENGLVKVSDVLRHQLSDLKYAGTESSNFVPYESLSPTLSIEGLVIDLDTVLISL 187 (993)
T ss_pred -e--cCCcceeccCC--CCcchhcc-cCceeeEeeechhhhccceeccccccccceeeeeccceeeeccccccccceeec
Confidence 1 12223332222 22122344 7788888887543221111 00000 0001100000000000000011111
Q ss_pred CCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEEEEcCCe
Q 002519 788 ETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQS 867 (913)
Q Consensus 788 ~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~ 867 (913)
.... ..+..+..++.+..+......+..+....+.+|+...... .+.+. +....+..++..++++..||.
T Consensus 188 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-----~~~~~~~~~~~~~v~~h~Dgs 257 (993)
T KOG1983|consen 188 PDAY--LGLSLIEYESLQVLYYSPTKILIGFNRGLVVIKDRASKYV---QSAYL-----PNGQLESRDGSHFVSYHTDGS 257 (993)
T ss_pred cccc--ccccccccccceeeeecCCCcceeeeeeeeeehhcccccc---hhhcc-----cccccCccCCceEEEEEecCC
Confidence 0000 1222344555565555555555555555666666543211 11111 111122778999999999999
Q ss_pred EEEEECCCCcE
Q 002519 868 LELWNMSENKT 878 (913)
Q Consensus 868 I~iwd~~~~~~ 878 (913)
+.+||+..++.
T Consensus 258 ~~fWd~s~g~~ 268 (993)
T KOG1983|consen 258 YAFWDVSSGKL 268 (993)
T ss_pred EEeeecCCCce
Confidence 99999998754
No 492
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=90.52 E-value=28 Score=37.54 Aligned_cols=192 Identities=9% Similarity=0.110 Sum_probs=101.5
Q ss_pred CeEEEEEcCCCCeEEEEEeCCCcEEEEEcC------CC-eeeEEee--------CCceEEEEecCC------------CE
Q 002519 720 SVMSLDFHPNKDDLICSCDGDGEIRYWSIN------NG-SCTRVFK--------GGTAQMRFQPHL------------GR 772 (913)
Q Consensus 720 ~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~------~~-~~~~~~~--------~~~~~v~~s~~~------------~~ 772 (913)
.-+.|+|+|.+. +.++...-+...+||.. .. ..+-.+. ...+-+.|+... ..
T Consensus 24 N~WGia~~p~~~-~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~ 102 (336)
T TIGR03118 24 NAWGLSYRPGGP-FWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSR 102 (336)
T ss_pred ccceeEecCCCC-EEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCccccee
Confidence 356799999765 44466677889999986 11 2222332 122334444222 34
Q ss_pred EEEEEcCCeEEEEECCCCe-----EEEEecC-CCC-CeEEEEEcCC--CCEEEEEeCC--eEEEEECCCCCCCceEEEe-
Q 002519 773 YLAAAAENVVSILDAETQA-----CRLSLQG-HTK-PIDSVCWDPS--GELLASVSED--SVRVWTVGSGSEGECVHEL- 840 (913)
Q Consensus 773 ll~~~~dg~I~i~D~~t~~-----~~~~l~~-h~~-~V~sl~~spd--g~~l~s~s~d--~I~vwdl~~~~~~~~i~~~- 840 (913)
++.+++||+|.-|...-.. ....+.. ... ....+++... +.+|+.+.-. +|.|||-.-.... .-..+
T Consensus 103 Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~-~~g~F~ 181 (336)
T TIGR03118 103 FLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPP-LPGSFI 181 (336)
T ss_pred EEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCcccccc-CCCCcc
Confidence 7888999999999753221 1122221 112 2345666543 5566666544 8999985422100 00000
Q ss_pred ----ecCCC-----------ceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEc--ccCCCeEEEEEeC------CC
Q 002519 841 ----SCNGN-----------KFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLT--AHEGLIAALAVST------ET 897 (913)
Q Consensus 841 ----~~~~~-----------~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~--~h~~~V~~l~~sp------dg 897 (913)
..... .|+-..-.++...=+.+..-|.|.+||....-+.++. +.-..-+.|+..| .+
T Consensus 182 DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~l~~r~as~g~LNaPWG~a~APa~FG~~sg 261 (336)
T TIGR03118 182 DPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQLLRRVASSGRLNAPWGLAIAPESFGSLSG 261 (336)
T ss_pred CCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCCcEEEEeccCCcccCCceeeeChhhhCCCCC
Confidence 00000 0111111222323333444568999998766555442 3334556777755 34
Q ss_pred CEEEEEeCCCcEEEeC
Q 002519 898 GYVASASHDKFVKLWK 913 (913)
Q Consensus 898 ~~Lasgs~DG~I~IWd 913 (913)
.+|+.=--||+|.+||
T Consensus 262 ~lLVGNFGDG~InaFD 277 (336)
T TIGR03118 262 ALLVGNFGDGTINAYD 277 (336)
T ss_pred CeEEeecCCceeEEec
Confidence 5555444599999987
No 493
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=90.21 E-value=34 Score=37.95 Aligned_cols=140 Identities=17% Similarity=0.247 Sum_probs=82.6
Q ss_pred CCeEEEEECCCCCEEEEEeCCCe------EEEEEcCCCC---cee-----EEeccCCC--------CeEEEEEcCCCCeE
Q 002519 676 SLITDVRFSPSMPRLATSSFDKT------VRVWDADNPG---YSL-----RTFMGHSA--------SVMSLDFHPNKDDL 733 (913)
Q Consensus 676 ~~V~~l~fspdg~~Lasgs~Dg~------V~Iwdl~~~~---~~~-----~~~~~h~~--------~V~sl~fsp~~~~l 733 (913)
+.+..|.+.+++..+++.+++|. +..+++.... ..+ ..+....+ ...+|++.+++. +
T Consensus 20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~-~ 98 (326)
T PF13449_consen 20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGS-F 98 (326)
T ss_pred CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCC-E
Confidence 55788888876677777787777 6555554311 011 11111111 345788855554 5
Q ss_pred EEEEeCC------CcEEEEEcCCCeeeEEe------------------eCCceEEEEecCCCEEEEEEc-----CC----
Q 002519 734 ICSCDGD------GEIRYWSINNGSCTRVF------------------KGGTAQMRFQPHLGRYLAAAA-----EN---- 780 (913)
Q Consensus 734 l~sgs~D------g~I~iwdl~~~~~~~~~------------------~~~~~~v~~s~~~~~ll~~~~-----dg---- 780 (913)
+++.-.+ ..|+.++.. ++....+ ..+...+++++++..++++.. |+
T Consensus 99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~ 177 (326)
T PF13449_consen 99 WISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRAN 177 (326)
T ss_pred EEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcccc
Confidence 5466556 678888866 5544333 123456899999997777654 22
Q ss_pred -------eEEEEECCC-C----eEEEEecC-----CCCCeEEEEEcCCCCEEEE
Q 002519 781 -------VVSILDAET-Q----ACRLSLQG-----HTKPIDSVCWDPSGELLAS 817 (913)
Q Consensus 781 -------~I~i~D~~t-~----~~~~~l~~-----h~~~V~sl~~spdg~~l~s 817 (913)
.|..||..+ + ...+.+.. ....|..+.+.+++++|+.
T Consensus 178 ~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 178 PDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred cccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 234456554 2 22333332 3467889999999997764
No 494
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=90.15 E-value=53 Score=40.05 Aligned_cols=61 Identities=26% Similarity=0.267 Sum_probs=42.6
Q ss_pred eecCCCCEEEEEEecCCCEEEEEeCCCc--EEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEE
Q 002519 629 VRASTSKVICCHFSSDGKLLATGGHDKK--AVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLAT 692 (913)
Q Consensus 629 l~~H~~~V~~l~fspdg~~Lasgs~Dg~--V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Las 692 (913)
...+...+.++.|+|+|.+++..+.++. ..+|-+.... .+..+...|....|++++..++.
T Consensus 55 ~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~l~l~~~~g---~~~~~~~~v~~~~~~~~g~~~~~ 117 (620)
T COG1506 55 LLTFGGGVSELRWSPDGSVLAFVSTDGGRVAQLYLVDVGG---LITKTAFGVSDARWSPDGDRIAF 117 (620)
T ss_pred ccccCCcccccccCCCCCEEEEEeccCCCcceEEEEecCC---ceeeeecccccceeCCCCCeEEE
Confidence 4456778999999999999998874432 3344333221 44456667888999999988776
No 495
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.99 E-value=3.2 Score=47.23 Aligned_cols=28 Identities=21% Similarity=0.650 Sum_probs=14.4
Q ss_pred eEEEEEcCCC---CEEEEEeCC-eEEEEECCC
Q 002519 803 IDSVCWDPSG---ELLASVSED-SVRVWTVGS 830 (913)
Q Consensus 803 V~sl~~spdg---~~l~s~s~d-~I~vwdl~~ 830 (913)
+..++|+|+. ..|..-+.| .|||||+..
T Consensus 168 l~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~ 199 (741)
T KOG4460|consen 168 LKQAAWHPSSILDPHLVLLTSDNVIRIYSLSE 199 (741)
T ss_pred eeeccccCCccCCceEEEEecCcEEEEEecCC
Confidence 4455666644 233333344 666666643
No 496
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=89.60 E-value=5.6 Score=46.91 Aligned_cols=176 Identities=15% Similarity=0.171 Sum_probs=94.4
Q ss_pred CCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCceeEE
Q 002519 634 SKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRT 713 (913)
Q Consensus 634 ~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~ 713 (913)
..+++|.-+|.|..++.+..||.|++|++...+..+... ...+-..+.|...| |++...|..+.-|.-+ +.....
T Consensus 15 e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~-~~~p~~nlv~tnhg--l~~~tsdrr~la~~~d--gvvqqq 89 (1636)
T KOG3616|consen 15 EFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICE-EAKPKENLVFTNHG--LVTATSDRRALAWKED--GVVQQQ 89 (1636)
T ss_pred ceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhh-hcCCccceeeeccc--eEEEeccchhheeecc--Ccchhh
Confidence 457778888999999999999999999987544322222 22333455565443 6666678777778654 222222
Q ss_pred ec---cCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcC--CCeeeEEeeCCceEEEEecCCCEEEEEEcCCeEEEEECC
Q 002519 714 FM---GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN--NGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAE 788 (913)
Q Consensus 714 ~~---~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~--~~~~~~~~~~~~~~v~~s~~~~~ll~~~~dg~I~i~D~~ 788 (913)
|. .......++...|...+++ |.--|.|.-+|.- .+-....| -++...-..|.+-|+.
T Consensus 90 fdyndqsekefss~~cdptaqnvv--gtlcggv~q~dcclrr~i~knkf---------------e~tyv~pshvilkdls 152 (1636)
T KOG3616|consen 90 FDYNDQSEKEFSSILCDPTAQNVV--GTLCGGVEQFDCCLRRGILKNKF---------------ELTYVAPSHVILKDLS 152 (1636)
T ss_pred ccccchhhhhccceecCchhhhhh--hhhccceeeehHHHHhHHHhccc---------------eeEEeccceeeeeccc
Confidence 21 1122334455555544433 3334555555531 11111111 1111122344555555
Q ss_pred CCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCC
Q 002519 789 TQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSG 831 (913)
Q Consensus 789 t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d~I~vwdl~~~ 831 (913)
++.....+....-.|..+.+.-..+|++.-...+|.|=|+.+.
T Consensus 153 n~trt~l~s~~g~aidelkilgkdryli~~ts~siii~d~es~ 195 (1636)
T KOG3616|consen 153 NDTRTNLISHKGLAIDELKILGKDRYLIAHTSESIIIADLESN 195 (1636)
T ss_pred CCceEeeeecCCcchhhhhhccccceEEeeccccEEEeecccc
Confidence 5544433332233455566665666777666668888888654
No 497
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=89.50 E-value=9.6 Score=35.96 Aligned_cols=113 Identities=13% Similarity=0.117 Sum_probs=67.6
Q ss_pred EEEEEecCCCEEEEEeCCCcEEEEECCCCc--------eeeEeccCCCCeEEEEE---CC--CCCEEEEEeCCCeEEEEE
Q 002519 637 ICCHFSSDGKLLATGGHDKKAVLWHTDTLK--------SKTNLEEHSSLITDVRF---SP--SMPRLATSSFDKTVRVWD 703 (913)
Q Consensus 637 ~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~--------~~~~l~~h~~~V~~l~f---sp--dg~~Lasgs~Dg~V~Iwd 703 (913)
..-.|......|++++..|+|.|++..... .+..+ .-...|++|+- .+ +...|+.|+ ...|.+||
T Consensus 2 aiGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~L-Nin~~italaaG~l~~~~~~D~LliGt-~t~llaYD 79 (136)
T PF14781_consen 2 AIGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFL-NINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYD 79 (136)
T ss_pred eEEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEE-ECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEE
Confidence 344566666788899999999999876322 22223 34556777754 32 233566665 55699999
Q ss_pred cCCCCceeEEeccCCCCeEEEEEcC---CCCeEEEEEeCCCcEEEEEcCCCeee
Q 002519 704 ADNPGYSLRTFMGHSASVMSLDFHP---NKDDLICSCDGDGEIRYWSINNGSCT 754 (913)
Q Consensus 704 l~~~~~~~~~~~~h~~~V~sl~fsp---~~~~ll~sgs~Dg~I~iwdl~~~~~~ 754 (913)
+++... ..++.-.+.|.+|.+-. ....++++| .+..|.-||.+..+..
T Consensus 80 V~~N~d--~Fyke~~DGvn~i~~g~~~~~~~~l~ivG-Gncsi~Gfd~~G~e~f 130 (136)
T PF14781_consen 80 VENNSD--LFYKEVPDGVNAIVIGKLGDIPSPLVIVG-GNCSIQGFDYEGNEIF 130 (136)
T ss_pred cccCch--hhhhhCccceeEEEEEecCCCCCcEEEEC-ceEEEEEeCCCCcEEE
Confidence 987332 23344556777777632 123355444 4667777776654443
No 498
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=89.32 E-value=45 Score=38.07 Aligned_cols=108 Identities=13% Similarity=-0.004 Sum_probs=59.2
Q ss_pred CceEEEEecCCCEEEEEEcCCeEEEEECCCCe-----EEEEecC--CCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCC
Q 002519 760 GTAQMRFQPHLGRYLAAAAENVVSILDAETQA-----CRLSLQG--HTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGS 832 (913)
Q Consensus 760 ~~~~v~~s~~~~~ll~~~~dg~I~i~D~~t~~-----~~~~l~~--h~~~V~sl~~spdg~~l~s~s~d~I~vwdl~~~~ 832 (913)
....+.+.+++..+++ +..|.+..- ...++ ....+.. -...+.++.|.+++..+++|..+.+.+. ...++
T Consensus 282 ~l~~v~~~~dg~l~l~-g~~G~l~~S-~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s-~D~G~ 358 (398)
T PLN00033 282 RIQNMGWRADGGLWLL-TRGGGLYVS-KGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAGGSGILLRS-TDGGK 358 (398)
T ss_pred ceeeeeEcCCCCEEEE-eCCceEEEe-cCCCCcccccceeecccCCCCcceEEEEEcCCCcEEEEECCCcEEEe-CCCCc
Confidence 3456677777665554 455655433 22222 1222221 1235889999999888888877744333 33333
Q ss_pred CCceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEE
Q 002519 833 EGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELW 871 (913)
Q Consensus 833 ~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iw 871 (913)
..........-...++.+.|.++++ .++.+.+|.|.-|
T Consensus 359 tW~~~~~~~~~~~~ly~v~f~~~~~-g~~~G~~G~il~~ 396 (398)
T PLN00033 359 SWKRDKGADNIAANLYSVKFFDDKK-GFVLGNDGVLLRY 396 (398)
T ss_pred ceeEccccCCCCcceeEEEEcCCCc-eEEEeCCcEEEEe
Confidence 3233222222234577888876654 6666777776554
No 499
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=89.24 E-value=56 Score=39.04 Aligned_cols=247 Identities=13% Similarity=0.013 Sum_probs=0.0
Q ss_pred EEEEEEecCCCEEEEEeCCC-----cEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCe-----EEEEEcC
Q 002519 636 VICCHFSSDGKLLATGGHDK-----KAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKT-----VRVWDAD 705 (913)
Q Consensus 636 V~~l~fspdg~~Lasgs~Dg-----~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~-----V~Iwdl~ 705 (913)
+-.++.|||.++||.+-... +++|.|+.++...-.. -.+....++|..|++.|+....|.. |....+.
T Consensus 131 Lg~~~~s~D~~~la~s~D~~G~e~y~lr~kdL~tg~~~~d~--i~~~~~~~~Wa~d~~~lfYt~~d~~~rp~kv~~h~~g 208 (682)
T COG1770 131 LGAASISPDHNLLAYSVDVLGDEQYTLRFKDLATGEELPDE--ITNTSGSFAWAADGKTLFYTRLDENHRPDKVWRHRLG 208 (682)
T ss_pred eeeeeeCCCCceEEEEEecccccEEEEEEEecccccccchh--hcccccceEEecCCCeEEEEEEcCCCCcceEEEEecC
Q ss_pred C--CCceeEEeccCCCCeEEEEEcCCCCeEEEEEeC--CCcEEEEEcCCC----eeeEEeeCCceEEEEecCCCEEEEEE
Q 002519 706 N--PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDG--DGEIRYWSINNG----SCTRVFKGGTAQMRFQPHLGRYLAAA 777 (913)
Q Consensus 706 ~--~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~--Dg~I~iwdl~~~----~~~~~~~~~~~~v~~s~~~~~ll~~~ 777 (913)
+ ....+..-........+|.-+.....+++.+++ .+.|++.+.... +++..-..++.--.-+.....++...
T Consensus 209 t~~~~d~lvyeE~d~~f~~~v~~s~s~~yi~i~~~~~~tsE~~ll~a~~p~~~p~vv~pr~~g~eY~~eh~~d~f~i~sN 288 (682)
T COG1770 209 TPGSSDELVYEEKDDRFFLSVGRSRSEAYIVISLGSHITSEVRLLDADDPEAEPKVVLPRENGVEYSVEHGGDRFYILSN 288 (682)
T ss_pred CCCCcceEEEEcCCCcEEEEeeeccCCceEEEEcCCCcceeEEEEecCCCCCceEEEEEcCCCcEEeeeecCcEEEEEec
Q ss_pred cCC-eEEEEECCC---CeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC----eEEEEECCCCCCCceEEEeecCCCceEE
Q 002519 778 AEN-VVSILDAET---QACRLSLQGHTKPIDSVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFHS 849 (913)
Q Consensus 778 ~dg-~I~i~D~~t---~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d----~I~vwdl~~~~~~~~i~~~~~~~~~i~~ 849 (913)
.+| ..+|+.... ...-..+..|...+.--.|+--..+|+....+ .|++++..++.... +..-+.....-..
T Consensus 289 ~~gknf~l~~ap~~~~~~~w~~~I~h~~~~~l~~~~~f~~~lVl~eR~~glp~v~v~~~~~~~~~~-i~f~~~ay~~~l~ 367 (682)
T COG1770 289 ADGKNFKLVRAPVSADKSNWRELIPHREDVRLEGVDLFADHLVLLERQEGLPRVVVRDRKTGEERG-IAFDDEAYSAGLS 367 (682)
T ss_pred CCCcceEEEEccCCCChhcCeeeeccCCCceeeeeeeeccEEEEEecccCCceEEEEecCCCceee-EEecchhhhcccc
Q ss_pred EEEeCCCCEEEEEEcCC----eEEEEECCCCcEEEEcccC
Q 002519 850 CVFHPTYPSLLVIGCYQ----SLELWNMSENKTMTLTAHE 885 (913)
Q Consensus 850 l~~sp~g~~l~s~s~dg----~I~iwd~~~~~~~~~~~h~ 885 (913)
..-.++...|-..-..- ++.=+|+.+++...++...
T Consensus 368 ~~~e~~s~~lR~~ysS~ttP~~~~~~dm~t~er~~Lkqqe 407 (682)
T COG1770 368 GNPEFDSDRLRYSYSSMTTPATLFDYDMATGERTLLKQQE 407 (682)
T ss_pred CCCCCCCccEEEEeecccccceeEEeeccCCcEEEEEecc
No 500
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=89.19 E-value=75 Score=40.42 Aligned_cols=261 Identities=8% Similarity=-0.026 Sum_probs=0.0
Q ss_pred EEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECC--CCCEEEEEeCCCeEEEEEcCC-----CCceeEEeccCCCC
Q 002519 648 LATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSP--SMPRLATSSFDKTVRVWDADN-----PGYSLRTFMGHSAS 720 (913)
Q Consensus 648 Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fsp--dg~~Lasgs~Dg~V~Iwdl~~-----~~~~~~~~~~h~~~ 720 (913)
++.++......+............-+...-..--.|+. ..+-+++....+.++|--+.. .+++++.+. -...
T Consensus 877 vfv~Gs~P~~il~t~rg~lr~h~~~gngpv~sfapfhnvn~p~gfiyvd~~~~l~i~~lp~~~~Ydn~wPvkkIp-l~~T 955 (1366)
T KOG1896|consen 877 VFVTGSKPYLILLTFRGVLRFHPVFGNGPVGSFAPFHNVNCPRGFIYVDRQGELVICVLPEALSYDNKWPVKKIP-LRKT 955 (1366)
T ss_pred EEEecCCceEEEEEcccccceeeeecCCcceeeeeeeccCCCcceEEECCCceEEEEEcchhcccCCCCcccccc-cccc
Q ss_pred eEEEEEcCCCCeEEEEE----------------------------eCCCcEEEEEcCCCeeeEEeeCCceEEEEecCC--
Q 002519 721 VMSLDFHPNKDDLICSC----------------------------DGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHL-- 770 (913)
Q Consensus 721 V~sl~fsp~~~~ll~sg----------------------------s~Dg~I~iwdl~~~~~~~~~~~~~~~v~~s~~~-- 770 (913)
...+.+++..+.+.+.. +....|.+.+.++.+.+..++-......++-.-
T Consensus 956 ~~~vvYh~e~~vy~v~t~~~~~~~~~~~d~~e~~~~~de~~~~p~~~~f~i~LisP~sw~vi~~iefq~~E~v~~~k~v~ 1035 (1366)
T KOG1896|consen 956 PHQVVYHYEKKVYAVITSTPVPYERLGEDGEEEVISRDENVIHPEGEQFSIQLISPESWEVIDKIEFQENEHVLHMKYVI 1035 (1366)
T ss_pred hhheeeeccceEEEEEEeccceeeecccccccccccccccccccccccceeEEecCCccccccccccCccceeeEEEEEE
Q ss_pred -----------CEEEEEEc---------CCeEEEEEC----------CCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeC
Q 002519 771 -----------GRYLAAAA---------ENVVSILDA----------ETQACRLSLQGHTKPIDSVCWDPSGELLASVSE 820 (913)
Q Consensus 771 -----------~~ll~~~~---------dg~I~i~D~----------~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~ 820 (913)
.++++|.. -|.++|||+ .+...++.+...+-.=+-.+.+.-.-+|+++..
T Consensus 1036 L~~~~t~~~~k~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgkP~t~~KlKel~~eE~KGtVsavceV~G~l~~~~G 1115 (1366)
T KOG1896|consen 1036 LDDEETTKGKKPYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGKPFTKNKLKELYIEEQKGTVSAVCEVRGHLLSSQG 1115 (1366)
T ss_pred EEecccccCCcceEEEEEeecccccccCcccEEEEEEEEecCCCCCCcccceeeeeehhhcccceEEEEEeccEEEEccC
Q ss_pred CeEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE----EEcccCCCeEEEEEeCC
Q 002519 821 DSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM----TLTAHEGLIAALAVSTE 896 (913)
Q Consensus 821 d~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~----~~~~h~~~V~~l~~spd 896 (913)
-.|.||++........+..+ .-.+......--.++|++|.-...|.+.-+.+.... ......-.+.++.|--+
T Consensus 1116 qKI~v~~l~r~~~ligVaFi---D~~~yv~s~~~vknlIl~gDV~ksisfl~fqeep~rlsL~srd~~~l~v~s~EFLVd 1192 (1366)
T KOG1896|consen 1116 QKIIVRKLDRDSELIGVAFI---DLPLYVHSMKVVKNLILAGDVMKSISFLGFQEEPYRLSLLSRDFEPLNVYSTEFLVD 1192 (1366)
T ss_pred cEEEEEEeccCCcceeeEEe---ccceeEEehhhhhhheehhhhhhceEEEEEccCceEEEEeecCCchhhceeeeeEEc
Q ss_pred CC--EEEEEeCCCcEEEe
Q 002519 897 TG--YVASASHDKFVKLW 912 (913)
Q Consensus 897 g~--~Lasgs~DG~I~IW 912 (913)
|. .++++..|+.|++|
T Consensus 1193 g~~L~flvsDa~rNi~vy 1210 (1366)
T KOG1896|consen 1193 GSNLSFLVSDADRNIHVY 1210 (1366)
T ss_pred CCeeEEEEEcCCCcEEEE
Done!