Query 002519
Match_columns 913
No_of_seqs 1262 out of 3991
Neff 8.4
Searched_HMMs 29240
Date Tue Mar 26 16:09:20 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002519.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1239-1242//hhsearch_pdb/002519hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vyh_C Platelet-activating fac 1.0 1 1 346.6 42.2 284 625-913 100-408 (410)
2 1nr0_A Actin interacting prote 1.0 1 1 341.8 42.9 297 608-913 168-608 (611)
3 3iz6_a 40S ribosomal protein R 1.0 1 1 332.9 34.3 290 621-913 54-372 (380)
4 1nr0_A Actin interacting prote 1.0 1 1 331.2 42.6 350 551-913 62-564 (611)
5 1got_B GT-beta; complex (GTP-b 1.0 1 1 330.5 46.6 288 621-913 43-340 (340)
6 3ow8_A WD repeat-containing pr 1.0 1 1 325.9 42.7 285 624-913 23-318 (321)
7 2ymu_A WD-40 repeat protein; u 1.0 1 1 324.2 47.8 342 551-913 224-577 (577)
8 2pbi_B Guanine nucleotide-bind 1.0 1 1 322.7 46.2 289 621-913 52-354 (354)
9 3sfz_A APAF-1, apoptotic pepti 1.0 1 1 318.3 41.8 239 673-913 838-1155(1249)
10 3dm0_A Maltose-binding peripla 1.0 1 1 317.1 43.8 285 622-913 371-690 (694)
No 1
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=1.00 E-value=1 Score=346.62 Aligned_cols=284 Identities=26% Similarity=0.497 Sum_probs=265.3
Q ss_pred EEEEEECCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEEC
Q ss_conf 65685249998799999069999999968990999978998123685247987689999899998999958990999986
Q 002519 625 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDA 704 (913)
Q Consensus 625 ~~~~l~~H~~~V~~i~fspdg~~Lasgs~Dg~V~iwd~~t~~~~~~l~~h~~~I~~i~fspdg~~Lasgs~Dg~I~Iwdl 704 (913)
....+.+|.+.|+|++|+|++.+|++|+.|++|+|||+.+++....+.+|...|.+++|++++++|++|+.|++|++||+
T Consensus 100 ~~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~ 179 (410)
T 1vyh_C 100 EKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDF 179 (410)
T ss_dssp CSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEET
T ss_pred CEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEEC
T ss_conf 30766166776899999699998999938985999989999377888166786878998599999999918981999958
Q ss_pred CCCCCEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEECC---CEEEEEECCCCEEEEEECCCE
Q ss_conf 89995248841578873799983899909999837992999985799056785178---107999039997999985991
Q 002519 705 DNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG---TAQMRFQPHLGRYLAAAAENV 781 (913)
Q Consensus 705 ~~~~~~~~~~~~h~~~I~si~fspd~~~ll~sgs~Dg~I~iwdi~~~~~~~~~~~~---~~~i~~sp~~~~ll~~~~dg~ 781 (913)
.+ ..++..+.+|...|.+++|+|++. ++++++.|+.|++||++++.++..+.++ +..+.+++++..+++++.|+.
T Consensus 180 ~~-~~~~~~~~~h~~~V~~v~~~p~~~-~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~ 257 (410)
T 1vyh_C 180 QG-FECIRTMHGHDHNVSSVSIMPNGD-HIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQT 257 (410)
T ss_dssp TS-SCEEECCCCCSSCEEEEEECSSSS-EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred CC-CCEEEEECCCCCCEEEEEEECCCC-EEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEECCCCE
T ss_conf 99-826699828999778999967999-9999968996999989999489999278862899999899999999918990
Q ss_pred EEEEECCCCEEEEEECCCCCCEEEEEECCC--------------------CCEEEEEECC-EEEEEECCCCCCCCEEEEE
Q ss_conf 999978997089995079988589999299--------------------9999999499-2999988889987137884
Q 002519 782 VSILDAETQACRLSLQGHTKPIDSVCWDPS--------------------GELLASVSED-SVRVWTVGSGSEGECVHEL 840 (913)
Q Consensus 782 I~i~D~~t~~~~~~l~~h~~~V~si~~spd--------------------g~~l~s~s~d-~I~iwdi~s~~~~~~i~~~ 840 (913)
|++||++++.+...+.+|...|.+++|+|+ +.+|++++.| .|++||++++ .++..+
T Consensus 258 v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~---~~~~~~ 334 (410)
T 1vyh_C 258 VRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG---MCLMTL 334 (410)
T ss_dssp EEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTT---EEEEEE
T ss_pred EEEEECCCCCEEEEECCCCCEEEEEEECCCCCCCCHHHHCCCCCCCCCCCCCEEEEEECCCEEEEEECCCC---CEEEEE
T ss_conf 99998989743667337874589999858655431012125555566788889999938984999988999---669999
Q ss_pred ECCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEE-EECCCCCCEEEEEEECCCCEEEEEECCCCEEEEC
Q ss_conf 039995299999079998999984981999979999189-9826689768999927999999996798299909
Q 002519 841 SCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 913 (913)
Q Consensus 841 ~~~~~~i~~i~~sp~g~~li~~s~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~Lasgs~DG~I~IWd 913 (913)
..|...|.+++|+|++.+|++++.|+.|++||+.+++++ .+.+|...|++++|+|++.+|++|+.||.|+||+
T Consensus 335 ~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~ 408 (410)
T 1vyh_C 335 VGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408 (410)
T ss_dssp ECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred ECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEE
T ss_conf 77888589999949989999995979299998999906899847778689999828999999992799489973
No 2
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=1.00 E-value=1 Score=341.81 Aligned_cols=297 Identities=22% Similarity=0.337 Sum_probs=213.2
Q ss_pred CCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCCEEEEEC-------CCCCCEEE
Q ss_conf 88988653345685313656852499987999990699999999689909999789981236852-------47987689
Q 002519 608 RDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE-------EHSSLITD 680 (913)
Q Consensus 608 ~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fspdg~~Lasgs~Dg~V~iwd~~t~~~~~~l~-------~h~~~I~~ 680 (913)
.|..+++|+.. +.+....+.+|.+.|++++|+||+++||+++.|++|++||+.+++.+..+. +|...|.+
T Consensus 168 ~D~~v~lwd~~---~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~ 244 (611)
T 1nr0_A 168 DDNTVAIFEGP---PFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFG 244 (611)
T ss_dssp TTSCEEEEETT---TBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEE
T ss_pred CCCEEEEEECC---CCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCCCCCEEE
T ss_conf 89809999799---975766520025716999997999989999899919998899982866513664323566787899
Q ss_pred EEECCCCCEEEEEECCCEEEEEECCCCCCE-------------------------------------------EEEECCC
Q ss_conf 999899998999958990999986899952-------------------------------------------4884157
Q 002519 681 VRFSPSMPRLATSSFDKTVRVWDADNPGYS-------------------------------------------LRTFMGH 717 (913)
Q Consensus 681 i~fspdg~~Lasgs~Dg~I~Iwdl~~~~~~-------------------------------------------~~~~~~h 717 (913)
++|+|++++|++++.|++|++||+.+ +.. ...+.+|
T Consensus 245 v~~spdg~~l~s~s~D~~v~lWd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh 323 (611)
T 1nr0_A 245 LTWSPDGTKIASASADKTIKIWNVAT-LKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGH 323 (611)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTT-TEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCC
T ss_pred EEECCCCCEEEEEECCCEEEEEECCC-CCEEEEECCCCCCCCEEEEEEECCCEEEEEECCCCEEEEECCCCCCCEEECCC
T ss_conf 99979999999990898099996888-70134404788766406899973887999958996899968899744698378
Q ss_pred CCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEE----------------------------------------
Q ss_conf 8873799983899909999837992999985799056785----------------------------------------
Q 002519 718 SASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF---------------------------------------- 757 (913)
Q Consensus 718 ~~~I~si~fspd~~~ll~sgs~Dg~I~iwdi~~~~~~~~~---------------------------------------- 757 (913)
...|++++|+|++. ++++++.|+.|++||+.++.+...+
T Consensus 324 ~~~v~~l~~spdg~-~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~ 402 (611)
T 1nr0_A 324 NKAITALSSSADGK-TLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDS 402 (611)
T ss_dssp SSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCT
T ss_pred CCCEEEEEEECCCC-EEEEEECCCCEEEEECCCCCEEEECCCCCCCEEEEEEECCCCCEEEEECCCCEEEEECCCCCCCC
T ss_conf 88889999918999-89999589849999788792563216677650789998789969999848966895468854356
Q ss_pred ---------------------------------------------ECCCEEEEEECCCCEEEEEECCCEEEEEECCCCEE
Q ss_conf ---------------------------------------------17810799903999799998599199997899708
Q 002519 758 ---------------------------------------------KGGTAQMRFQPHLGRYLAAAAENVVSILDAETQAC 792 (913)
Q Consensus 758 ---------------------------------------------~~~~~~i~~sp~~~~ll~~~~dg~I~i~D~~t~~~ 792 (913)
...+.+++|+|++..+++++.|+.|++||+.+...
T Consensus 403 ~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~ 482 (611)
T 1nr0_A 403 SKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASV 482 (611)
T ss_dssp TSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEE
T ss_pred CCEEEEECCCCCCEEEEECCCCEEEEEECCEEEEEECCCEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEECCCCCE
T ss_conf 52120014899707998079969999967639998489434640688954999928998999968997399999459922
Q ss_pred --EEEECCCCCCEEEEEECCCCCEEEEEECC-EEEEEECCCCCCCCEEE--EEECCCCCEEEEEEECCCCEEEEEECCCE
Q ss_conf --99950799885899992999999999499-29999888899871378--84039995299999079998999984981
Q 002519 793 --RLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVH--ELSCNGNKFHSCVFHPTYPSLLVIGCYQS 867 (913)
Q Consensus 793 --~~~l~~h~~~V~si~~spdg~~l~s~s~d-~I~iwdi~s~~~~~~i~--~~~~~~~~i~~i~~sp~g~~li~~s~dg~ 867 (913)
+.. .+|...|++++|+|++++|++++.| .|++|++.+.. .++. .+..|...|.+++|+|++++|++++.|+.
T Consensus 483 ~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~--~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~ 559 (611)
T 1nr0_A 483 SEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNF--ELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNS 559 (611)
T ss_dssp EEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTT--EESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred EEEEC-CCCCCCEEEEEECCCCCEEEEECCCCCEEEEECCCCC--CEEEEEEEEECCCCEEEEEECCCCCEEEEEECCCC
T ss_conf 24101-5778860799998999989999489989998857787--22321026404664258998998997999979972
Q ss_pred EEEEECCCCC--E-EEECCC-CCCEEEEEEECCCCEEEEEECCCCEEEEC
Q ss_conf 9999799991--8-998266-89768999927999999996798299909
Q 002519 868 LELWNMSENK--T-MTLTAH-EGLIAALAVSTETGYVASASHDKFVKLWK 913 (913)
Q Consensus 868 I~iwd~~~~~--~-~~~~~h-~~~V~~l~~spdg~~Lasgs~DG~I~IWd 913 (913)
|++|++..+. . ..+.+| ...|.+++|+|++. |++++.|++|++|+
T Consensus 560 v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~d~~-l~s~~~D~~i~lW~ 608 (611)
T 1nr0_A 560 VIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETT-IVSAGQDSNIKFWN 608 (611)
T ss_dssp EEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTE-EEEEETTSCEEEEE
T ss_pred EEEEECCCCCCCCCHHHCCCCCCCEEEEEECCCCE-EEEECCCCCEEEEE
T ss_conf 99997887555632644467656711899858997-99952887789984
No 3
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=1.00 E-value=1 Score=332.95 Aligned_cols=290 Identities=17% Similarity=0.363 Sum_probs=255.9
Q ss_pred CCCEEEEEEECCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEE
Q ss_conf 53136568524999879999906999999996899099997899812368524798768999989999899995899099
Q 002519 621 FSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVR 700 (913)
Q Consensus 621 ~~~~~~~~l~~H~~~V~~i~fspdg~~Lasgs~Dg~V~iwd~~t~~~~~~l~~h~~~I~~i~fspdg~~Lasgs~Dg~I~ 700 (913)
..+.....+++|.+.|++++|+|++.+|++|+.|++|+|||+.+++....+..|...|.+++|+|++++|++++.|+.|+
T Consensus 54 ~~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~ 133 (380)
T 3iz6_a 54 TDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACS 133 (380)
T ss_dssp CCCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCE
T ss_pred CEEEEEECCCCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCCCEEEECCCCCEEEEEECCCCCEEEEEECCCCEE
T ss_conf 21398200004534778999968999899991898099987888860148855998789999989999899954798589
Q ss_pred EEECCCCC------CEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEE--------CCCEEEEE
Q ss_conf 99868999------52488415788737999838999099998379929999857990567851--------78107999
Q 002519 701 VWDADNPG------YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK--------GGTAQMRF 766 (913)
Q Consensus 701 Iwdl~~~~------~~~~~~~~h~~~I~si~fspd~~~ll~sgs~Dg~I~iwdi~~~~~~~~~~--------~~~~~i~~ 766 (913)
+|++.... .....+.+|...|.++.|.|++...+++++.|+.|++||++++.++..+. ..+..+.|
T Consensus 134 iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~ 213 (380)
T 3iz6_a 134 IFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSI 213 (380)
T ss_dssp EEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEE
T ss_pred EEECCCCCCCCCCCCCEEECCCCCCCEEEEEEECCCCCEEEEECCCCCEEEEECCCCCEEEEEECCCCCCCCCCEEEEEE
T ss_conf 99897775556773312640689754689999648997899977998199998677957899605667887567699992
Q ss_pred EC-CCCEEEEEECCCEEEEEECCC-CEEEEEECCCCCCEEEEEECCCCCEEEEEECC-EEEEEECCCCCCCCEEEEEECC
Q ss_conf 03-999799998599199997899-70899950799885899992999999999499-2999988889987137884039
Q 002519 767 QP-HLGRYLAAAAENVVSILDAET-QACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCN 843 (913)
Q Consensus 767 sp-~~~~ll~~~~dg~I~i~D~~t-~~~~~~l~~h~~~V~si~~spdg~~l~s~s~d-~I~iwdi~s~~~~~~i~~~~~~ 843 (913)
.+ ++..+++++.|+.|++||++. ...+..+.+|...|.+++|+|++.+|++++.| .|++||++++ .++..+..+
T Consensus 214 ~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~---~~~~~~~~~ 290 (380)
T 3iz6_a 214 NSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTG---HQLQVYNRE 290 (380)
T ss_dssp CSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTT---EEEEEECCC
T ss_pred ECCCCCEEEEEECCCEEEEEECCCCCCCEEEECCCCCCEEEEEEECCCCEEEEECCCCEEEEEECCCC---CEEEEECCC
T ss_conf 06999989999789869999788897346998874887579999169996999838996999988899---688986156
Q ss_pred C-------CCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEE-EE----CCCCCCEEEEEEECCCCEEEEEECCCCEEE
Q ss_conf 9-------95299999079998999984981999979999189-98----266897689999279999999967982999
Q 002519 844 G-------NKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TL----TAHEGLIAALAVSTETGYVASASHDKFVKL 911 (913)
Q Consensus 844 ~-------~~i~~i~~sp~g~~li~~s~dg~I~iwd~~~~~~~-~~----~~h~~~V~~l~~spdg~~Lasgs~DG~I~I 911 (913)
. ..+.+++|+|++.++++++.|+.|++||+..++.. .+ .+|.+.|++++|+|++.+|++|+.||.|+|
T Consensus 291 ~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~i 370 (380)
T 3iz6_a 291 PDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKI 370 (380)
T ss_dssp CSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEE
T ss_pred CCCCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCCEEEEEECCCCCEEEEEECCCCEEE
T ss_conf 55566556863899988999989999799979999887781578970236777784579998999998999608998899
Q ss_pred EC
Q ss_conf 09
Q 002519 912 WK 913 (913)
Q Consensus 912 Wd 913 (913)
|+
T Consensus 371 W~ 372 (380)
T 3iz6_a 371 WA 372 (380)
T ss_dssp EE
T ss_pred EE
T ss_conf 95
No 4
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=1.00 E-value=1 Score=331.19 Aligned_cols=350 Identities=16% Similarity=0.230 Sum_probs=270.3
Q ss_pred CCEEEEECCCCCCCC---CCCCEEEECCCCCHHHHCCCCCCCCCCCCCEEEE-CCCCCCCCC--------CCCCCCCCCC
Q ss_conf 560999718992003---7997389388730543001111368766745660-026899988--------8988653345
Q 002519 551 KPLMMFGTDGAGTLT---SPSNQLWDDKDLELRADMDRLVEDGSLDDNVESF-LSHDDTDPR--------DAGGRGMDVS 618 (913)
Q Consensus 551 ~~~~~~s~dg~~~~~---~~~~~iWd~~~g~~~~~~~~~~~~g~~d~~v~~~-~~~d~~~~~--------d~~~~~~~~~ 618 (913)
...+.|+|||.++++ ++.++|||..+++..... .+ ..+...|... +++++.... ...++.|+.
T Consensus 62 v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~-~~---~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~- 136 (611)
T 1nr0_A 62 TTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKT-TI---PVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDT- 136 (611)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEE-EE---ECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTT-
T ss_pred EEEEEECCCCCEEEEEECCCCEEEEECCCCCCEEEE-EE---CCCCCCEEEEEECCCCCEEEEEECCCCCEEEEEEEEC-
T ss_conf 599999999968999948997899489898415667-62---2557844899989999979999899773669999638-
Q ss_pred CCCCCEEEEEEECCCCCEEEEEEECCCC-EEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCC
Q ss_conf 6853136568524999879999906999-999996899099997899812368524798768999989999899995899
Q 002519 619 QGFSFKEANSVRASTSKVICCHFSSDGK-LLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDK 697 (913)
Q Consensus 619 ~~~~~~~~~~l~~H~~~V~~i~fspdg~-~Lasgs~Dg~V~iwd~~t~~~~~~l~~h~~~I~~i~fspdg~~Lasgs~Dg 697 (913)
-+....+.+|.+.|++++|+|++. +|++++.|++|++||..+++...++.+|...|++++|+|++++|++++.|+
T Consensus 137 ----~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~ 212 (611)
T 1nr0_A 137 ----GTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDG 212 (611)
T ss_dssp ----CCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred ----CCCCCEECCCCCCCEEEEECCCCCEEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCC
T ss_conf ----9976325478898369998899982999992898099997999757665200257169999979999899998999
Q ss_pred EEEEEECCCCCCEEEEEC-------CCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEE------------
Q ss_conf 099998689995248841-------5788737999838999099998379929999857990567851------------
Q 002519 698 TVRVWDADNPGYSLRTFM-------GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK------------ 758 (913)
Q Consensus 698 ~I~Iwdl~~~~~~~~~~~-------~h~~~I~si~fspd~~~ll~sgs~Dg~I~iwdi~~~~~~~~~~------------ 758 (913)
+|++||+.+ +..+..+. +|...|.+++|+|++. +|++++.|++|++||++++++...+.
T Consensus 213 ~i~lwd~~~-g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~-~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~ 290 (611)
T 1nr0_A 213 TIVLYNGVD-GTKTGVFEDDSLKNVAHSGSVFGLTWSPDGT-KIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGI 290 (611)
T ss_dssp CEEEEETTT-CCEEEECBCTTSSSCSSSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEE
T ss_pred CEEEEECCC-CCEEEEECCCCCCCCCCCCCEEEEEECCCCC-EEEEEECCCEEEEEECCCCCEEEEECCCCCCCCEEEEE
T ss_conf 199988999-8286651366432356678789999979999-99999089809999688870134404788766406899
Q ss_pred ----------------------------------CCCEEEEEECCCCEEEEEECCCEEEEEECCCCEEEEEE-CC-----
Q ss_conf ----------------------------------78107999039997999985991999978997089995-07-----
Q 002519 759 ----------------------------------GGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSL-QG----- 798 (913)
Q Consensus 759 ----------------------------------~~~~~i~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l-~~----- 798 (913)
..+.+++|+|++..+++++.|+.|++||+.++.+...+ .+
T Consensus 291 ~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v 370 (611)
T 1nr0_A 291 IWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMI 370 (611)
T ss_dssp EECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCE
T ss_pred EECCCEEEEEECCCCEEEEECCCCCCCEEECCCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCCEEEECCCCCCCEE
T ss_conf 97388799995899689996889974469837888889999918999899995898499997887925632166776507
Q ss_pred ----------------------------------------------------------------------------CCCC
Q ss_conf ----------------------------------------------------------------------------9988
Q 002519 799 ----------------------------------------------------------------------------HTKP 802 (913)
Q Consensus 799 ----------------------------------------------------------------------------h~~~ 802 (913)
|...
T Consensus 371 ~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~ 450 (611)
T 1nr0_A 371 TGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYN 450 (611)
T ss_dssp EEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSC
T ss_pred EEEEECCCCCEEEEECCCCEEEEECCCCCCCCCCEEEEECCCCCCEEEEECCCCEEEEEECCEEEEEECCCEEEEECCCC
T ss_conf 89998789969999848966895468854356521200148997079980799699999676399984894346406889
Q ss_pred EEEEEECCCCCEEEEEECC-EEEEEECCCCCCCCEEEEEECCCCCEEEEEEECCCCEEEEEECCCEEEEEECCC-CCEEE
Q ss_conf 5899992999999999499-299998888998713788403999529999907999899998498199997999-91899
Q 002519 803 IDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSE-NKTMT 880 (913)
Q Consensus 803 V~si~~spdg~~l~s~s~d-~I~iwdi~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~li~~s~dg~I~iwd~~~-~~~~~ 880 (913)
+.+++|+|++++|++++.| .|++||+..+. ...+.. ..|...|.+++|+|++.+|++++.|+.|++|++.+ +++..
T Consensus 451 v~~va~spdg~~lasgs~D~~v~lwd~~~~~-~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~ 528 (611)
T 1nr0_A 451 SSCVALSNDKQFVAVGGQDSKVHVYKLSGAS-VSEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAH 528 (611)
T ss_dssp EEEEEECTTSCEEEEEETTSEEEEEEEETTE-EEEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESC
T ss_pred CEEEEEECCCCEEEEECCCCEEEEEECCCCC-EEEEEC-CCCCCCEEEEEECCCCCEEEEECCCCCEEEEECCCCCCEEE
T ss_conf 5499992899899996899739999945992-224101-57788607999989999899994899899988577872232
Q ss_pred ---ECCCCCCEEEEEEECCCCEEEEEECCCCEEEEC
Q ss_conf ---826689768999927999999996798299909
Q 002519 881 ---LTAHEGLIAALAVSTETGYVASASHDKFVKLWK 913 (913)
Q Consensus 881 ---~~~h~~~V~~l~~spdg~~Lasgs~DG~I~IWd 913 (913)
+..|...|++++|+|++++|++++.|+.|+||+
T Consensus 529 ~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~ 564 (611)
T 1nr0_A 529 TNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWN 564 (611)
T ss_dssp CCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred EEEEEECCCCEEEEEECCCCCEEEEEECCCCEEEEE
T ss_conf 102640466425899899899799997997299997
No 5
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=1.00 E-value=1 Score=330.54 Aligned_cols=288 Identities=21% Similarity=0.424 Sum_probs=261.6
Q ss_pred CCCEEEEEEECCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEE
Q ss_conf 53136568524999879999906999999996899099997899812368524798768999989999899995899099
Q 002519 621 FSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVR 700 (913)
Q Consensus 621 ~~~~~~~~l~~H~~~V~~i~fspdg~~Lasgs~Dg~V~iwd~~t~~~~~~l~~h~~~I~~i~fspdg~~Lasgs~Dg~I~ 700 (913)
..++....+++|.+.|++++|++++++|++++.||+|+|||+.+++.+..+..|...|.+++|+|++++|++++.|+.|+
T Consensus 43 ~~~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~ 122 (340)
T 1got_B 43 IQMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICS 122 (340)
T ss_dssp CCCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEE
T ss_pred CCCHHHEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCEEEECCCCCEEEEEECCCCCEEEEEECCCEEE
T ss_conf 01211001048778368999889999999981889689998999874337603886188999999999999980898199
Q ss_pred EEECCCCC---CEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEEC---CCEEEEEECCCCEEE
Q ss_conf 99868999---524884157887379998389990999983799299998579905678517---810799903999799
Q 002519 701 VWDADNPG---YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYL 774 (913)
Q Consensus 701 Iwdl~~~~---~~~~~~~~h~~~I~si~fspd~~~ll~sgs~Dg~I~iwdi~~~~~~~~~~~---~~~~i~~sp~~~~ll 774 (913)
+|++.+.. .....+.+|...|.++.|.+++. +++++.|+.|++||+++++++..+.+ .+.++.|+|++..++
T Consensus 123 iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 200 (340)
T 1got_B 123 IYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ--IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFV 200 (340)
T ss_dssp EEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE--EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred EEECCCCCCCCEEEEEECCCCCCEEEEEECCCCC--EEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEE
T ss_conf 9979668886136778448776389999879996--99998999299998999918899769998668999989999999
Q ss_pred EEECCCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECC-EEEEEECCCCCCCCEEEEEEC--CCCCEEEEE
Q ss_conf 99859919999789970899950799885899992999999999499-299998888998713788403--999529999
Q 002519 775 AAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSC--NGNKFHSCV 851 (913)
Q Consensus 775 ~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~l~s~s~d-~I~iwdi~s~~~~~~i~~~~~--~~~~i~~i~ 851 (913)
+++.|+.|++||++++.++..+.+|...|.+++|+|++.+|++++.| .|++||++.+ ..+..+.. +...+.+++
T Consensus 201 sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~---~~~~~~~~~~~~~~v~~~~ 277 (340)
T 1got_B 201 SGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD---QELMTYSHDNIICGITSVS 277 (340)
T ss_dssp EEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT---EEEEEECCTTCCSCEEEEE
T ss_pred EEECCCCEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEECCCCCEEEEECCCC---CEEEEECCCCCCCCEEEEE
T ss_conf 9938993999778998167897487687799999499998999748981999988999---1899972688524169999
Q ss_pred EECCCCEEEEEECCCEEEEEECCCCCEE-EECCCCCCEEEEEEECCCCEEEEEECCCCEEEEC
Q ss_conf 9079998999984981999979999189-9826689768999927999999996798299909
Q 002519 852 FHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 913 (913)
Q Consensus 852 ~sp~g~~li~~s~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~Lasgs~DG~I~IWd 913 (913)
|+|++.++++++.|+.|++||+..++.. .+.+|...|.+++|+|++.+|++|+.||.|+|||
T Consensus 278 ~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 278 FSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp ECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred ECCCCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEECCCCCEEECC
T ss_conf 989999999977999099988413838658505778488999829999899972886189559
No 6
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=1.00 E-value=1 Score=325.93 Aligned_cols=285 Identities=18% Similarity=0.367 Sum_probs=260.9
Q ss_pred EEEEEEECCCCCEEEEEEECC----CCEEEEEECCCCEEEEECCCCCE--EEEECCCCCCEEEEEECCCCCEEEEEECCC
Q ss_conf 365685249998799999069----99999996899099997899812--368524798768999989999899995899
Q 002519 624 KEANSVRASTSKVICCHFSSD----GKLLATGGHDKKAVLWHTDTLKS--KTNLEEHSSLITDVRFSPSMPRLATSSFDK 697 (913)
Q Consensus 624 ~~~~~l~~H~~~V~~i~fspd----g~~Lasgs~Dg~V~iwd~~t~~~--~~~l~~h~~~I~~i~fspdg~~Lasgs~Dg 697 (913)
...+.+.+|.+.|++++|+++ +.+|++|+.|++|+||++...+. ...+.+|...|.+++|++++.++++++.|+
T Consensus 23 ~~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~ 102 (321)
T 3ow8_A 23 ILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDA 102 (321)
T ss_dssp EEEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTS
T ss_pred HEEEECCCCCCCEEEEEEECCCCCCCCEEEEECCCCCEEEEECCCCCEEEEEEECCCCCCEEEEEECCCCCEEEEEECCC
T ss_conf 04552156889679999824888888889998499989998898997436660056778889999889999899993798
Q ss_pred EEEEEECCCCCCEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEEC---CCEEEEEECCCCEEE
Q ss_conf 09999868999524884157887379998389990999983799299998579905678517---810799903999799
Q 002519 698 TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYL 774 (913)
Q Consensus 698 ~I~Iwdl~~~~~~~~~~~~h~~~I~si~fspd~~~ll~sgs~Dg~I~iwdi~~~~~~~~~~~---~~~~i~~sp~~~~ll 774 (913)
+|++||+.+ +..+..+..+...+.+++|+|++. ++++++.|+.|++|++++++....+.. .+.+++|+|++..++
T Consensus 103 ~i~lWd~~~-~~~~~~~~~~~~~~~~~~~spdg~-~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la 180 (321)
T 3ow8_A 103 HIRLWDLEN-GKQIKSIDAGPVDAWTLAFSPDSQ-YLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLA 180 (321)
T ss_dssp EEEEEETTT-TEEEEEEECCTTCCCCEEECTTSS-EEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEE
T ss_pred CEEEEECCC-CCEEEEEECCCCCEEEEEECCCCC-EEEEECCCCCEEEEECCCCCEEEEECCCCCEEEEEEECCCCCEEE
T ss_conf 099997899-979899937985679999999999-899983899199998679946677438994299999989999999
Q ss_pred EEECCCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECC-EEEEEECCCCCCCCEEEEEECCCCCEEEEEEE
Q ss_conf 99859919999789970899950799885899992999999999499-29999888899871378840399952999990
Q 002519 775 AAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFH 853 (913)
Q Consensus 775 ~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~l~s~s~d-~I~iwdi~s~~~~~~i~~~~~~~~~i~~i~~s 853 (913)
+++.|+.|++||+++++++..+.+|...|.+++|+|++.+|++++.| .|++||++.+ .++..+..|...|.+++|+
T Consensus 181 sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~---~~~~~~~~h~~~v~~~~~s 257 (321)
T 3ow8_A 181 SGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHA---NLAGTLSGHASWVLNVAFC 257 (321)
T ss_dssp EEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTC---CEEEEECCCSSCEEEEEEC
T ss_pred EECCCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEECCCCEEEEEECCCC---CEEEEECCCCCCEEEEEEC
T ss_conf 9928983999999999099998025896018999489998999909980999878996---3258986888826899997
Q ss_pred CCCCEEEEEECCCEEEEEECCCCCEE-EECCCCCCEEEEEEECCCCEEEEEECCCCEEEEC
Q ss_conf 79998999984981999979999189-9826689768999927999999996798299909
Q 002519 854 PTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 913 (913)
Q Consensus 854 p~g~~li~~s~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~Lasgs~DG~I~IWd 913 (913)
|++.+|++++.|+.|++||+.+++++ .+.+|...|.+++|++++.+|++++.||.|+|||
T Consensus 258 p~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd 318 (321)
T 3ow8_A 258 PDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYD 318 (321)
T ss_dssp TTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEE
T ss_pred CCCCEEEEEECCCCEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEE
T ss_conf 9999899981898099994999888889837877389999989999999975898089995
No 7
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=1.00 E-value=1 Score=324.16 Aligned_cols=342 Identities=27% Similarity=0.467 Sum_probs=283.2
Q ss_pred CCEEEEECCCCCCCC---CCCCEEEECCCCCHHHHCCCCCCCCCCCCCEEEE-CCCCC----CCCCCCCCCCCCCCCCCC
Q ss_conf 560999718992003---7997389388730543001111368766745660-02689----998889886533456853
Q 002519 551 KPLMMFGTDGAGTLT---SPSNQLWDDKDLELRADMDRLVEDGSLDDNVESF-LSHDD----TDPRDAGGRGMDVSQGFS 622 (913)
Q Consensus 551 ~~~~~~s~dg~~~~~---~~~~~iWd~~~g~~~~~~~~~~~~g~~d~~v~~~-~~~d~----~~~~d~~~~~~~~~~~~~ 622 (913)
...+.|++++..+++ ++.+++||... +....+ ..+...+... +.+++ ....+..+++|+. .
T Consensus 224 v~~~~~s~dg~~l~~~~~d~~i~~w~~~~-~~~~~~------~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~----~ 292 (577)
T 2ymu_A 224 VRGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQTL------TGHSSSVNGVAFRPDGQTIASASDDKTVKLWNR----N 292 (577)
T ss_dssp EEEEEECTTSSCEEEEETTSCEEEECTTS-CEEEEE------CCCSSCEEEEEECTTSSEEEEEETTSCEEEEET----T
T ss_pred EEEEEECCCCCEEEEEECCCEEEEEECCC-CEEEEE------ECCCCCEEEEEECCCCCEEEEEECCCEEEEEEC----C
T ss_conf 89999979999999991899899995999-799998------068898799999689999999959997999948----9
Q ss_pred CEEEEEEECCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEE
Q ss_conf 13656852499987999990699999999689909999789981236852479876899998999989999589909999
Q 002519 623 FKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVW 702 (913)
Q Consensus 623 ~~~~~~l~~H~~~V~~i~fspdg~~Lasgs~Dg~V~iwd~~t~~~~~~l~~h~~~I~~i~fspdg~~Lasgs~Dg~I~Iw 702 (913)
.+....+.+|...|++++|+|++.+|++++.|+.|++|+... ..+..+.+|...|.+++|+|++++|++++.|+.|++|
T Consensus 293 ~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~-~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~ 371 (577)
T 2ymu_A 293 GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG-QHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW 371 (577)
T ss_dssp SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTS-CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCC-CEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEE
T ss_conf 958999706889769999999999999996999599996999-7257874788977999998999999999699989999
Q ss_pred ECCCCCCEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEEC---CCEEEEEECCCCEEEEEECC
Q ss_conf 868999524884157887379998389990999983799299998579905678517---81079990399979999859
Q 002519 703 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAAE 779 (913)
Q Consensus 703 dl~~~~~~~~~~~~h~~~I~si~fspd~~~ll~sgs~Dg~I~iwdi~~~~~~~~~~~---~~~~i~~sp~~~~ll~~~~d 779 (913)
+.. +..+..+.+|...|.+++|+|++.. +++++.|+.|++||.. ++....+.+ .+..+.|+|++..+++++.|
T Consensus 372 ~~~--~~~~~~~~~~~~~v~~~~~s~dg~~-l~~~~~d~~v~~~~~~-~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d 447 (577)
T 2ymu_A 372 NRN--GQLLQTLTGHSSSVRGVAFSPDGQT-IASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDDQTIASASDD 447 (577)
T ss_dssp ETT--CCEEEEEECCSSCEEEEEECTTSSC-EEEEETTSEEEEECTT-CCEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred CCC--CCEEEEECCCCCCEEEEEECCCCCE-EEEEECCCEEEEEECC-CCEEEEECCCCCCEEEEEECCCCCEEEEECCC
T ss_conf 089--9789985278897489999899999-9999499989999699-97898962889975799998999999999399
Q ss_pred CEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECC-EEEEEECCCCCCCCEEEEEECCCCCEEEEEEECCCCE
Q ss_conf 919999789970899950799885899992999999999499-2999988889987137884039995299999079998
Q 002519 780 NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPS 858 (913)
Q Consensus 780 g~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~l~s~s~d-~I~iwdi~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~ 858 (913)
+.|++||. +++.+..+.+|...|.+++|+|++++|++++.| .|++|+.. + .++..+..|...|.+++|+|++++
T Consensus 448 ~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~-~---~~~~~~~~h~~~v~~l~~s~dg~~ 522 (577)
T 2ymu_A 448 KTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-G---QLLQTLTGHSSSVRGVAFSPDGQT 522 (577)
T ss_dssp SEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETT-S---CEEEEEECCSSCEEEEEECTTSSC
T ss_pred CEEEEEEC-CCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEECCC-C---CEEEEEECCCCCEEEEEECCCCCE
T ss_conf 98999979-998899972789977899996999999999198979999399-9---789998679999899999189999
Q ss_pred EEEEECCCEEEEEECCCCCEEEECCCCCCEEEEEEECCCCEEEEEECCCCEEEEC
Q ss_conf 9999849819999799991899826689768999927999999996798299909
Q 002519 859 LLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 913 (913)
Q Consensus 859 li~~s~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~DG~I~IWd 913 (913)
|++++.|+.|++||.....+..+.+|.+.|++++|+||+++|++++.|+.|++||
T Consensus 523 l~s~~~dg~v~lwd~~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 523 IASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp EEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEEEECCCEEEEEECCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEC
T ss_conf 9999896999999699978989718888878999968999999990899999969
No 8
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=1.00 E-value=1 Score=322.70 Aligned_cols=289 Identities=19% Similarity=0.359 Sum_probs=258.3
Q ss_pred CCCEEEEEEECCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEE
Q ss_conf 53136568524999879999906999999996899099997899812368524798768999989999899995899099
Q 002519 621 FSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVR 700 (913)
Q Consensus 621 ~~~~~~~~l~~H~~~V~~i~fspdg~~Lasgs~Dg~V~iwd~~t~~~~~~l~~h~~~I~~i~fspdg~~Lasgs~Dg~I~ 700 (913)
+.++....+++|.+.|+|++|++++.+|++|+.|++|+|||..+++....+..|...|.+++|+|++.+|++++.|+.|+
T Consensus 52 ~~~~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~ 131 (354)
T 2pbi_B 52 FVMKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCS 131 (354)
T ss_dssp CCCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEE
T ss_pred CCCEEEEEECCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCCCEEEECCCCCEEEEEECCCCCEEEEEECCCCEE
T ss_conf 22278799648898088999989999899992898299998999875357742788779999989999799713899889
Q ss_pred EEECCCCC-----CEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEECC---CEEEEEECC--C
Q ss_conf 99868999-----5248841578873799983899909999837992999985799056785178---107999039--9
Q 002519 701 VWDADNPG-----YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG---TAQMRFQPH--L 770 (913)
Q Consensus 701 Iwdl~~~~-----~~~~~~~~h~~~I~si~fspd~~~ll~sgs~Dg~I~iwdi~~~~~~~~~~~~---~~~i~~sp~--~ 770 (913)
+|++.... .....+.+|...|.++.|++++.. +++++.|++|++||+++++++..+.++ +.++.+.+. +
T Consensus 132 v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g 210 (354)
T 2pbi_B 132 VYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQ-ILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETG 210 (354)
T ss_dssp EEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSC
T ss_pred EEEEECCCCCCCCCCCEEEECCCCCEEEEEEECCCCE-EEEEECCCCEEEEECCCCEEEEEECCCCCCEEEEEEEECCCC
T ss_conf 9997425665533331163066784789999689999-999918995899767778199999278998699998757999
Q ss_pred CEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECC-EEEEEECCCCCCCCEEEEEECC--CCCE
Q ss_conf 979999859919999789970899950799885899992999999999499-2999988889987137884039--9952
Q 002519 771 GRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCN--GNKF 847 (913)
Q Consensus 771 ~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~l~s~s~d-~I~iwdi~s~~~~~~i~~~~~~--~~~i 847 (913)
..+++++.|+.|++||+++++++..+.+|...|.+++|+|++.+|++++.| .|++||++.. ..+..+..+ ...+
T Consensus 211 ~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~---~~~~~~~~~~~~~~~ 287 (354)
T 2pbi_B 211 NTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRAD---REVAIYSKESIIFGA 287 (354)
T ss_dssp CEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT---EEEEEECCTTCCSCE
T ss_pred CEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCC---CEEEEECCCCCCCCE
T ss_conf 99999947995999988899277983588788179999589998999969981999988899---678887478740345
Q ss_pred EEEEEECCCCEEEEEECCCEEEEEECCCCCEE-EECCCCCCEEEEEEECCCCEEEEEECCCCEEEEC
Q ss_conf 99999079998999984981999979999189-9826689768999927999999996798299909
Q 002519 848 HSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 913 (913)
Q Consensus 848 ~~i~~sp~g~~li~~s~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~Lasgs~DG~I~IWd 913 (913)
.+++|+|++.++++++.|+.|++||+.++..+ .+.+|...|++++|+|++.+|++|+.||.|+||+
T Consensus 288 ~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 288 SSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred EEEEEECCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEECCCCCEEECC
T ss_conf 5999947999999997899299998988955779987899578999989999999982888889619
No 9
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=1.00 E-value=1 Score=318.27 Aligned_cols=239 Identities=20% Similarity=0.368 Sum_probs=137.2
Q ss_pred CCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCCEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCC-
Q ss_conf 4798768999989999899995899099998689995248841578873799983899909999837992999985799-
Q 002519 673 EHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG- 751 (913)
Q Consensus 673 ~h~~~I~~i~fspdg~~Lasgs~Dg~I~Iwdl~~~~~~~~~~~~h~~~I~si~fspd~~~ll~sgs~Dg~I~iwdi~~~- 751 (913)
+|...|.+++|+|++.++++++.|+.|++|++.+ +..+..+.+|...|.+++|+|++.. +++++.|+.|++|++...
T Consensus 838 ~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~-~~~~~~~~~h~~~v~~v~~spdg~~-l~s~s~dg~v~vw~~~~~~ 915 (1249)
T 3sfz_A 838 GHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDS-RLKVADCRGHLSWVHGVMFSPDGSS-FLTASDDQTIRVWETKKVC 915 (1249)
T ss_dssp SSSSCCCEEEECSSTTEEEEECSSSCEEEEETTT-TEEEEEECCCSSCEEEEEECTTSSE-EEEEETTSCEEEEEHHHHH
T ss_pred CCCCCEEEEEECCCCCEEEEEECCCEEEEEECCC-CCEEEECCCCCCCEEEEEECCCCCE-EEEEECCCEEEEEECCCCC
T ss_conf 8777607999827888899994798699998678-9565322787665689999899998-9999589728988746652
Q ss_pred ---------------------------------------EEEEEEECCCEEEEEECCCCEEEEEECCCEEEEEECCCCEE
Q ss_conf ---------------------------------------05678517810799903999799998599199997899708
Q 002519 752 ---------------------------------------SCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQAC 792 (913)
Q Consensus 752 ---------------------------------------~~~~~~~~~~~~i~~sp~~~~ll~~~~dg~I~i~D~~t~~~ 792 (913)
.........+.+++|++++..+++++.++.|++||..+++.
T Consensus 916 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~ 995 (1249)
T 3sfz_A 916 KNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRV 995 (1249)
T ss_dssp SCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSC
T ss_pred EEEEECCCCEEEEEECCCCCEEEEECCCCCEEEEECCCCEEEECCCCCEEEEEECCCCCEEEEECCCCCEEEEECCCCCE
T ss_conf 01021133103689759986899813776248984476508972567278999958997799986999889997578723
Q ss_pred EEEECCCCCCEEEEEECCCCCEEEEEECC-EEEEEECCCCC-------------------------------------CC
Q ss_conf 99950799885899992999999999499-29999888899-------------------------------------87
Q 002519 793 RLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGS-------------------------------------EG 834 (913)
Q Consensus 793 ~~~l~~h~~~V~si~~spdg~~l~s~s~d-~I~iwdi~s~~-------------------------------------~~ 834 (913)
...+.+|...|.+++|+|++++|++++.| .|++|++.++. ..
T Consensus 996 ~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~ 1075 (1249)
T 3sfz_A 996 FSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITG 1075 (1249)
T ss_dssp EEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEECCBCCSSCEEEEEECSSSEEEEEESSSEEEEEETTTT
T ss_pred EEECCCCCCCEEEEEECCCCCEEEEECCCCEEEEEECCCCCEEEEECCCCCEEEEEECCCCCEEEEECCCCEEEEECCCC
T ss_conf 44303677716899998999989998699879999879996689852787389999908995899978896899888988
Q ss_pred CEEEEEECCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEE-EECCCCCCEEEEEEECCCCEEEEEECCCCEEEEC
Q ss_conf 137884039995299999079998999984981999979999189-9826689768999927999999996798299909
Q 002519 835 ECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 913 (913)
Q Consensus 835 ~~i~~~~~~~~~i~~i~~sp~g~~li~~s~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~Lasgs~DG~I~IWd 913 (913)
.++..+..|...+.+++|+|++.++++++.|+.|++||+.++... .+.+|.+.|++++|+|++++|++++.||.|++||
T Consensus 1076 ~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd 1155 (1249)
T 3sfz_A 1076 RIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWN 1155 (1249)
T ss_dssp CCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBCCCCCSSCEEEEEECSSSSEEEEEETTSCCCEEE
T ss_pred CEEEEECCCCCCEEEEEECCCCCEEEEECCCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEE
T ss_conf 65588746688489999989999899984999489987898500125506877679999979999899982899799998
No 10
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=1.00 E-value=1 Score=317.07 Aligned_cols=285 Identities=23% Similarity=0.411 Sum_probs=243.5
Q ss_pred CCEEEEEEECCCCCEEEEEEECCC-CEEEEEECCCCEEEEECCCC-----CEEEEECCCCCCEEEEEECCCCCEEEEEEC
Q ss_conf 313656852499987999990699-99999968990999978998-----123685247987689999899998999958
Q 002519 622 SFKEANSVRASTSKVICCHFSSDG-KLLATGGHDKKAVLWHTDTL-----KSKTNLEEHSSLITDVRFSPSMPRLATSSF 695 (913)
Q Consensus 622 ~~~~~~~l~~H~~~V~~i~fspdg-~~Lasgs~Dg~V~iwd~~t~-----~~~~~l~~h~~~I~~i~fspdg~~Lasgs~ 695 (913)
.++....+++|.+.|+|++|++++ .+|++|+.|++|++|++.+. .....+.+|...|++++|++++++|++++.
T Consensus 371 ~l~~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~ 450 (694)
T 3dm0_A 371 GLVLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSW 450 (694)
T ss_dssp SSEEEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred CCCHHHHCCCCCCEEEEEEECCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCEECCCCCCEEEEEECCCCCEEEEEEC
T ss_conf 46412110467740699986699888899980899489997568875555333242588884799999799999999808
Q ss_pred CCEEEEEECCCCCCEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEE------ECCCEEEEEECC
Q ss_conf 99099998689995248841578873799983899909999837992999985799056785------178107999039
Q 002519 696 DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF------KGGTAQMRFQPH 769 (913)
Q Consensus 696 Dg~I~Iwdl~~~~~~~~~~~~h~~~I~si~fspd~~~ll~sgs~Dg~I~iwdi~~~~~~~~~------~~~~~~i~~sp~ 769 (913)
|++|+|||+.+ +.....+.+|...|.+++|+|++.. +++++.|+.|++||+......... ...+.+++|+++
T Consensus 451 Dg~v~vwd~~~-~~~~~~~~~h~~~v~~~~~s~~~~~-l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 528 (694)
T 3dm0_A 451 DGELRLWDLAA-GVSTRRFVGHTKDVLSVAFSLDNRQ-IVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPN 528 (694)
T ss_dssp TSEEEEEETTT-TEEEEEEECCSSCEEEEEECTTSSC-EEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSC
T ss_pred CCCEEEEECCC-CCCEEEEECCCCCEEEEEEECCCCE-EEEEECCCEEEEEECCCCCCEEECCCCCCCCCCEEEEEEECC
T ss_conf 99289997999-9513688679998899999089998-999948897999978998540430377888786799999179
Q ss_pred C--CEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECC-EEEEEECCCCCCCCEEEEEECCCCC
Q ss_conf 9--979999859919999789970899950799885899992999999999499-2999988889987137884039995
Q 002519 770 L--GRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNK 846 (913)
Q Consensus 770 ~--~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~l~s~s~d-~I~iwdi~s~~~~~~i~~~~~~~~~ 846 (913)
+ ..+++++.|+.|++||+++.++...+.+|...|++++|+|++++|++++.| .|++||++++ .++..+.. ...
T Consensus 529 ~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~---~~~~~~~~-~~~ 604 (694)
T 3dm0_A 529 TLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEG---KKLYSLEA-NSV 604 (694)
T ss_dssp SSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTT---EEEECCBC-SSC
T ss_pred CCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCC---CEEEEECC-CCC
T ss_conf 88655999968985999989999278998678888889999189898999958994999988999---56788338-994
Q ss_pred EEEEEEECCCCEEEEEECCCEEEEEECCCCCEE-EECCC-------------------CCCEEEEEEECCCCEEEEEECC
Q ss_conf 299999079998999984981999979999189-98266-------------------8976899992799999999679
Q 002519 847 FHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAH-------------------EGLIAALAVSTETGYVASASHD 906 (913)
Q Consensus 847 i~~i~~sp~g~~li~~s~dg~I~iwd~~~~~~~-~~~~h-------------------~~~V~~l~~spdg~~Lasgs~D 906 (913)
+.+++|+|++.++++ +.++.|++||+.++.++ .+..+ ...+++++|+|++++|++|+.|
T Consensus 605 v~~~~~sp~~~~l~~-~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~D 683 (694)
T 3dm0_A 605 IHALCFSPNRYWLCA-ATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTD 683 (694)
T ss_dssp EEEEEECSSSSEEEE-EETTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETT
T ss_pred EEEEEECCCCCEEEE-ECCCCEEEEECCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCEEEEECCC
T ss_conf 789998599868999-7699789998999987332002456532002456645677404775148986899989997589
Q ss_pred CCEEEEC
Q ss_conf 8299909
Q 002519 907 KFVKLWK 913 (913)
Q Consensus 907 G~I~IWd 913 (913)
|.|+||+
T Consensus 684 g~i~iW~ 690 (694)
T 3dm0_A 684 GVIRVWG 690 (694)
T ss_dssp SEEEEEE
T ss_pred CEEEEEE
T ss_conf 8499985
Done!