Query 002520
Match_columns 913
No_of_seqs 162 out of 318
Neff 3.7
Searched_HMMs 46136
Date Fri Mar 29 01:38:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002520.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002520hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00606 rad50 rad50. This fa 99.7 1.4E-14 2.9E-19 180.2 26.6 271 605-881 682-965 (1311)
2 COG1340 Uncharacterized archae 99.5 5E-11 1.1E-15 128.1 35.7 212 663-888 9-242 (294)
3 COG1340 Uncharacterized archae 99.2 3.8E-08 8.2E-13 106.3 30.9 201 678-888 10-228 (294)
4 PHA02562 46 endonuclease subun 98.6 3.5E-05 7.6E-10 88.0 30.8 101 768-878 304-404 (562)
5 PRK02224 chromosome segregatio 98.6 1.4E-05 2.9E-10 96.5 28.5 43 605-648 456-502 (880)
6 KOG0962 DNA repair protein RAD 98.6 4.6E-06 1E-10 103.4 22.7 269 605-879 679-963 (1294)
7 TIGR02169 SMC_prok_A chromosom 98.5 0.0001 2.2E-09 90.0 31.0 7 446-452 573-579 (1164)
8 COG1196 Smc Chromosome segrega 98.5 0.00018 3.8E-09 90.4 32.4 78 804-881 828-905 (1163)
9 PRK11637 AmiB activator; Provi 98.3 0.0014 2.9E-08 74.2 32.1 69 664-732 44-112 (428)
10 PHA02562 46 endonuclease subun 98.3 0.00082 1.8E-08 77.0 30.8 21 762-782 304-325 (562)
11 PF00261 Tropomyosin: Tropomyo 98.3 0.00027 5.9E-09 74.3 24.7 219 668-888 2-225 (237)
12 PRK02224 chromosome segregatio 98.3 0.00049 1.1E-08 83.3 30.3 39 851-889 410-448 (880)
13 PRK11637 AmiB activator; Provi 98.3 0.00039 8.4E-09 78.5 27.4 65 663-727 50-114 (428)
14 PF07888 CALCOCO1: Calcium bin 98.3 0.00084 1.8E-08 78.5 30.6 94 664-759 140-233 (546)
15 PRK03918 chromosome segregatio 98.3 0.00087 1.9E-08 80.9 31.5 30 664-693 456-485 (880)
16 PF05667 DUF812: Protein of un 98.2 0.0024 5.1E-08 75.8 31.6 90 802-891 489-585 (594)
17 KOG0161 Myosin class II heavy 98.1 0.0026 5.7E-08 83.0 31.8 19 504-522 683-701 (1930)
18 COG1579 Zn-ribbon protein, pos 98.1 0.00083 1.8E-08 71.7 22.9 172 684-882 13-185 (239)
19 KOG0996 Structural maintenance 98.1 0.0022 4.9E-08 79.5 29.2 205 692-902 388-607 (1293)
20 KOG0996 Structural maintenance 98.0 0.0023 4.9E-08 79.4 28.3 69 663-731 781-849 (1293)
21 PRK01156 chromosome segregatio 98.0 0.0098 2.1E-07 72.7 33.6 22 667-688 476-497 (895)
22 PRK03918 chromosome segregatio 98.0 0.0059 1.3E-07 73.9 31.2 35 690-724 195-229 (880)
23 COG4372 Uncharacterized protei 98.0 0.028 6E-07 63.7 32.9 226 664-906 85-311 (499)
24 TIGR00606 rad50 rad50. This fa 98.0 0.0021 4.5E-08 82.0 27.6 90 809-901 886-975 (1311)
25 KOG0161 Myosin class II heavy 98.0 0.0045 9.8E-08 80.9 30.1 59 800-858 1065-1123(1930)
26 KOG0250 DNA repair protein RAD 97.9 0.011 2.5E-07 73.2 31.1 75 800-874 361-436 (1074)
27 KOG0964 Structural maintenance 97.9 0.0052 1.1E-07 75.3 27.6 207 680-886 257-500 (1200)
28 PF07888 CALCOCO1: Calcium bin 97.9 0.019 4.2E-07 67.6 31.5 18 860-877 371-388 (546)
29 PF00038 Filament: Intermediat 97.9 0.031 6.7E-07 60.2 30.5 64 663-726 50-113 (312)
30 KOG0971 Microtubule-associated 97.9 0.004 8.7E-08 75.6 25.3 76 816-892 460-536 (1243)
31 TIGR03185 DNA_S_dndD DNA sulfu 97.8 0.02 4.3E-07 68.2 31.2 47 663-709 205-251 (650)
32 KOG0964 Structural maintenance 97.8 0.011 2.3E-07 72.7 28.7 60 664-723 682-741 (1200)
33 PF10174 Cast: RIM-binding pro 97.8 0.012 2.5E-07 72.0 29.3 250 663-912 283-577 (775)
34 PRK01156 chromosome segregatio 97.8 0.0072 1.6E-07 73.8 27.7 35 665-699 195-229 (895)
35 KOG0933 Structural maintenance 97.8 0.0049 1.1E-07 75.6 25.5 132 739-883 787-922 (1174)
36 PF06008 Laminin_I: Laminin Do 97.8 0.059 1.3E-06 57.6 30.5 207 669-891 47-258 (264)
37 KOG0977 Nuclear envelope prote 97.8 0.0047 1E-07 72.5 23.5 24 664-687 110-133 (546)
38 PRK04778 septation ring format 97.8 0.042 9E-07 64.8 31.5 86 809-894 353-438 (569)
39 PF12128 DUF3584: Protein of u 97.7 0.032 6.9E-07 71.0 32.4 90 635-730 581-670 (1201)
40 PF09726 Macoilin: Transmembra 97.7 0.0081 1.8E-07 72.6 25.8 50 686-735 430-479 (697)
41 PF15070 GOLGA2L5: Putative go 97.7 0.064 1.4E-06 64.3 32.1 100 789-888 152-272 (617)
42 COG4942 Membrane-bound metallo 97.7 0.05 1.1E-06 62.5 29.7 67 667-733 38-104 (420)
43 PF12128 DUF3584: Protein of u 97.7 0.042 9.2E-07 70.0 31.8 63 670-732 603-665 (1201)
44 KOG1029 Endocytic adaptor prot 97.7 0.028 6.1E-07 67.8 28.0 42 740-781 445-497 (1118)
45 KOG0250 DNA repair protein RAD 97.6 0.041 8.9E-07 68.6 29.8 96 663-759 657-754 (1074)
46 PF00038 Filament: Intermediat 97.6 0.15 3.4E-06 54.9 32.7 65 668-732 69-133 (312)
47 COG4942 Membrane-bound metallo 97.6 0.16 3.4E-06 58.6 31.6 70 663-732 41-110 (420)
48 COG1579 Zn-ribbon protein, pos 97.6 0.0074 1.6E-07 64.7 19.9 65 668-732 11-75 (239)
49 PF00261 Tropomyosin: Tropomyo 97.6 0.02 4.3E-07 60.5 22.8 59 801-859 173-231 (237)
50 PF06008 Laminin_I: Laminin Do 97.6 0.16 3.4E-06 54.3 29.7 151 741-892 96-252 (264)
51 KOG4673 Transcription factor T 97.6 0.062 1.3E-06 64.4 28.4 37 663-699 405-441 (961)
52 PRK04863 mukB cell division pr 97.5 0.13 2.9E-06 67.0 33.9 121 667-787 348-487 (1486)
53 PF05701 WEMBL: Weak chloropla 97.5 0.14 3E-06 60.2 30.7 47 806-852 283-329 (522)
54 KOG0933 Structural maintenance 97.5 0.07 1.5E-06 66.1 28.6 82 797-878 815-896 (1174)
55 KOG0994 Extracellular matrix g 97.4 0.034 7.4E-07 69.3 24.7 59 670-728 1418-1476(1758)
56 KOG0977 Nuclear envelope prote 97.4 0.097 2.1E-06 61.9 27.5 25 801-825 166-190 (546)
57 KOG0995 Centromere-associated 97.4 0.26 5.7E-06 58.4 30.6 57 810-866 424-480 (581)
58 KOG4674 Uncharacterized conser 97.4 0.24 5.2E-06 65.0 32.8 142 762-907 1306-1450(1822)
59 KOG0979 Structural maintenance 97.4 0.034 7.3E-07 68.8 24.0 65 824-888 289-353 (1072)
60 KOG0976 Rho/Rac1-interacting s 97.3 0.18 3.9E-06 61.4 28.9 77 803-879 329-405 (1265)
61 TIGR02680 conserved hypothetic 97.3 0.25 5.5E-06 64.0 32.5 34 663-696 745-778 (1353)
62 PF05701 WEMBL: Weak chloropla 97.3 0.14 3.1E-06 60.1 27.8 89 805-893 380-482 (522)
63 KOG0976 Rho/Rac1-interacting s 97.3 0.27 5.9E-06 60.0 29.8 36 665-700 97-132 (1265)
64 KOG0018 Structural maintenance 97.3 0.057 1.2E-06 67.2 25.0 116 768-889 379-494 (1141)
65 KOG0995 Centromere-associated 97.3 0.62 1.3E-05 55.4 32.2 24 709-732 332-355 (581)
66 KOG1029 Endocytic adaptor prot 97.3 0.36 7.8E-06 58.9 30.2 17 743-759 441-457 (1118)
67 PRK04778 septation ring format 97.3 0.17 3.6E-06 59.9 27.8 22 862-883 509-530 (569)
68 KOG4674 Uncharacterized conser 97.3 0.12 2.7E-06 67.6 28.4 172 681-857 101-277 (1822)
69 PRK04863 mukB cell division pr 97.2 0.18 4E-06 65.7 30.0 30 860-889 513-542 (1486)
70 KOG0971 Microtubule-associated 97.2 0.41 9E-06 59.2 30.4 22 627-648 223-244 (1243)
71 KOG0994 Extracellular matrix g 97.2 0.37 8E-06 60.8 30.3 212 665-889 1420-1648(1758)
72 TIGR03185 DNA_S_dndD DNA sulfu 97.2 0.4 8.6E-06 57.5 30.5 70 663-732 212-285 (650)
73 KOG0612 Rho-associated, coiled 97.2 0.46 1E-05 60.3 31.4 39 387-425 243-281 (1317)
74 PF10174 Cast: RIM-binding pro 97.2 0.24 5.3E-06 60.9 28.4 41 804-844 465-505 (775)
75 PF08317 Spc7: Spc7 kinetochor 97.1 0.054 1.2E-06 59.8 21.0 22 738-759 127-148 (325)
76 PF06160 EzrA: Septation ring 97.1 0.38 8.2E-06 57.1 29.0 97 663-759 78-181 (560)
77 PF09726 Macoilin: Transmembra 97.1 0.094 2E-06 63.7 24.2 82 804-885 566-647 (697)
78 COG3883 Uncharacterized protei 97.1 0.27 5.9E-06 53.8 25.2 62 666-727 37-98 (265)
79 PF06160 EzrA: Septation ring 97.1 0.16 3.4E-06 60.2 25.5 90 806-895 346-435 (560)
80 COG5185 HEC1 Protein involved 97.1 0.45 9.9E-06 55.5 28.0 125 663-787 333-511 (622)
81 COG3883 Uncharacterized protei 97.1 0.3 6.6E-06 53.4 25.2 61 664-724 42-102 (265)
82 PF08317 Spc7: Spc7 kinetochor 97.0 0.34 7.3E-06 53.7 25.9 126 740-874 157-290 (325)
83 PF15619 Lebercilin: Ciliary p 97.0 0.36 7.8E-06 50.5 24.6 26 669-694 14-39 (194)
84 PRK09039 hypothetical protein; 97.0 0.069 1.5E-06 59.7 20.6 48 805-852 138-185 (343)
85 PF15070 GOLGA2L5: Putative go 97.0 0.42 9.2E-06 57.6 28.3 40 693-732 27-66 (617)
86 COG5185 HEC1 Protein involved 97.0 0.53 1.2E-05 54.9 26.9 26 861-886 559-584 (622)
87 KOG0979 Structural maintenance 97.0 0.49 1.1E-05 59.1 28.2 173 685-869 178-355 (1072)
88 COG0419 SbcC ATPase involved i 96.9 1.6 3.4E-05 54.6 33.1 40 741-781 602-641 (908)
89 smart00787 Spc7 Spc7 kinetocho 96.9 0.099 2.1E-06 58.0 20.3 22 738-759 122-143 (312)
90 COG4372 Uncharacterized protei 96.9 1.2 2.7E-05 51.0 29.2 58 668-725 75-132 (499)
91 PF05667 DUF812: Protein of un 96.9 0.24 5.2E-06 59.4 24.4 95 665-759 319-414 (594)
92 TIGR03007 pepcterm_ChnLen poly 96.8 0.31 6.7E-06 55.9 24.3 80 702-781 204-293 (498)
93 KOG4643 Uncharacterized coiled 96.7 0.89 1.9E-05 57.0 27.4 36 682-717 302-337 (1195)
94 TIGR01843 type_I_hlyD type I s 96.7 0.62 1.3E-05 51.4 24.3 22 663-684 77-98 (423)
95 PRK09039 hypothetical protein; 96.7 0.42 9.1E-06 53.6 23.1 48 665-712 44-91 (343)
96 TIGR00634 recN DNA repair prot 96.6 0.93 2E-05 53.6 26.9 44 859-902 345-388 (563)
97 PF13514 AAA_27: AAA domain 96.6 1.1 2.4E-05 57.0 28.7 12 768-779 859-870 (1111)
98 TIGR02680 conserved hypothetic 96.6 1.5 3.3E-05 57.1 30.2 41 665-705 740-780 (1353)
99 KOG0962 DNA repair protein RAD 96.6 1.1 2.4E-05 57.7 27.8 69 800-870 1011-1079(1294)
100 KOG0978 E3 ubiquitin ligase in 96.5 2.4 5.3E-05 51.9 29.5 62 811-872 552-613 (698)
101 TIGR01000 bacteriocin_acc bact 96.5 0.72 1.6E-05 53.0 24.2 31 661-691 91-121 (457)
102 PF12718 Tropomyosin_1: Tropom 96.4 0.41 8.9E-06 47.7 19.0 40 691-730 3-42 (143)
103 KOG1937 Uncharacterized conser 96.4 2.8 6.2E-05 49.0 27.8 101 801-901 386-493 (521)
104 KOG0018 Structural maintenance 96.4 1 2.2E-05 56.8 25.6 80 807-886 398-477 (1141)
105 smart00787 Spc7 Spc7 kinetocho 96.4 1.8 4E-05 48.3 25.5 126 740-874 152-285 (312)
106 PF12718 Tropomyosin_1: Tropom 96.4 0.49 1.1E-05 47.2 19.0 63 670-732 3-65 (143)
107 COG0419 SbcC ATPase involved i 96.4 4.5 9.9E-05 50.6 32.5 18 741-758 554-571 (908)
108 KOG0612 Rho-associated, coiled 96.4 2.3 4.9E-05 54.5 28.5 181 665-853 463-651 (1317)
109 cd07627 BAR_Vps5p The Bin/Amph 96.3 1.7 3.7E-05 45.5 26.2 33 791-823 102-134 (216)
110 KOG0980 Actin-binding protein 96.3 3.5 7.5E-05 51.5 29.0 19 741-759 412-430 (980)
111 TIGR01005 eps_transp_fam exopo 96.3 1.2 2.6E-05 54.0 25.7 33 636-669 138-172 (754)
112 PF09728 Taxilin: Myosin-like 96.3 2.3 5E-05 47.4 25.7 117 663-780 25-152 (309)
113 PF15619 Lebercilin: Ciliary p 96.3 0.94 2E-05 47.4 21.4 14 744-757 94-107 (194)
114 PF09325 Vps5: Vps5 C terminal 96.3 1.7 3.7E-05 44.8 25.0 8 668-675 32-39 (236)
115 cd07664 BAR_SNX2 The Bin/Amphi 96.2 2.4 5.1E-05 45.6 25.7 51 829-879 163-214 (234)
116 COG4477 EzrA Negative regulato 96.2 2.5 5.4E-05 50.3 26.1 140 761-906 345-495 (570)
117 PF06705 SF-assemblin: SF-asse 96.2 2.3 5E-05 45.3 26.6 17 741-757 94-110 (247)
118 PF09789 DUF2353: Uncharacteri 96.2 3.1 6.8E-05 46.8 27.8 16 894-909 273-288 (319)
119 PF09730 BicD: Microtubule-ass 96.1 0.54 1.2E-05 57.5 21.4 57 674-730 265-321 (717)
120 PRK11281 hypothetical protein; 96.1 1.8 3.9E-05 55.5 26.7 38 741-778 165-207 (1113)
121 PF04849 HAP1_N: HAP1 N-termin 96.1 3.2 7E-05 46.5 28.2 177 695-887 97-303 (306)
122 KOG0999 Microtubule-associated 96.1 3.3 7.1E-05 49.5 26.4 42 839-880 215-256 (772)
123 KOG0963 Transcription factor/C 96.1 0.63 1.4E-05 55.7 21.1 22 711-732 244-265 (629)
124 KOG0978 E3 ubiquitin ligase in 96.1 4.4 9.6E-05 49.7 28.4 29 727-757 451-479 (698)
125 TIGR03007 pepcterm_ChnLen poly 96.1 0.74 1.6E-05 52.9 21.5 43 714-758 252-294 (498)
126 PRK10929 putative mechanosensi 96.1 7.3 0.00016 50.3 32.6 60 698-759 105-164 (1109)
127 PF10168 Nup88: Nuclear pore c 96.0 0.49 1.1E-05 57.9 20.6 30 846-875 685-714 (717)
128 KOG0946 ER-Golgi vesicle-tethe 96.0 1.5 3.3E-05 54.0 23.7 25 482-506 455-479 (970)
129 PF14662 CCDC155: Coiled-coil 95.9 2.5 5.3E-05 44.7 22.3 18 712-729 39-56 (193)
130 PF14662 CCDC155: Coiled-coil 95.8 1.4 3.1E-05 46.4 20.1 30 699-728 5-34 (193)
131 PF05483 SCP-1: Synaptonemal c 95.8 7.1 0.00015 47.8 29.7 40 740-779 304-347 (786)
132 KOG1003 Actin filament-coating 95.7 3.6 7.8E-05 43.7 22.7 96 768-863 107-203 (205)
133 PF09728 Taxilin: Myosin-like 95.7 4.7 0.0001 45.0 32.5 62 664-725 47-108 (309)
134 KOG4643 Uncharacterized coiled 95.6 4.1 9E-05 51.5 25.9 77 677-755 260-338 (1195)
135 PRK10929 putative mechanosensi 95.6 8.1 0.00018 49.9 29.3 45 813-857 267-311 (1109)
136 cd07623 BAR_SNX1_2 The Bin/Amp 95.6 3.7 8E-05 43.4 26.0 89 791-879 110-204 (224)
137 PRK10869 recombination and rep 95.6 5.1 0.00011 47.8 26.1 42 858-899 339-380 (553)
138 KOG4673 Transcription factor T 95.6 8.4 0.00018 47.3 35.6 85 816-900 521-619 (961)
139 PF05010 TACC: Transforming ac 95.5 4.1 9E-05 43.4 24.1 21 761-781 73-94 (207)
140 TIGR01005 eps_transp_fam exopo 95.5 8.6 0.00019 47.0 28.9 31 703-733 238-268 (754)
141 PF13851 GAS: Growth-arrest sp 95.4 4.1 9E-05 42.8 23.2 22 763-784 106-128 (201)
142 PRK10698 phage shock protein P 95.4 1.3 2.9E-05 47.0 18.3 93 763-855 52-150 (222)
143 cd07596 BAR_SNX The Bin/Amphip 95.4 3.4 7.5E-05 41.4 26.0 53 827-879 147-200 (218)
144 KOG4809 Rab6 GTPase-interactin 95.4 5.7 0.00012 47.5 24.7 92 761-858 322-413 (654)
145 PF10168 Nup88: Nuclear pore c 95.3 2.7 5.8E-05 51.8 23.0 18 764-781 633-650 (717)
146 PF10146 zf-C4H2: Zinc finger- 95.2 0.61 1.3E-05 50.1 15.5 82 795-876 23-104 (230)
147 PF04849 HAP1_N: HAP1 N-termin 95.2 6 0.00013 44.5 23.4 126 761-888 171-297 (306)
148 TIGR01843 type_I_hlyD type I s 95.2 3.3 7.1E-05 45.8 21.5 17 672-688 79-95 (423)
149 COG4477 EzrA Negative regulato 95.2 5.5 0.00012 47.6 23.9 86 810-895 353-438 (570)
150 PF10186 Atg14: UV radiation r 95.2 2 4.2E-05 45.5 18.9 22 810-831 69-90 (302)
151 PF12325 TMF_TATA_bd: TATA ele 95.2 0.67 1.4E-05 45.4 14.2 99 801-910 20-120 (120)
152 cd07665 BAR_SNX1 The Bin/Amphi 95.1 5.9 0.00013 42.8 25.3 27 836-862 170-196 (234)
153 PF13514 AAA_27: AAA domain 95.1 10 0.00022 48.6 28.2 13 770-782 854-866 (1111)
154 TIGR00634 recN DNA repair prot 95.1 9.1 0.0002 45.6 26.0 43 665-707 159-201 (563)
155 PF12252 SidE: Dot/Icm substra 95.1 11 0.00025 48.1 27.0 39 866-904 1304-1344(1439)
156 PF10186 Atg14: UV radiation r 95.1 1.5 3.3E-05 46.3 17.9 42 801-842 67-108 (302)
157 KOG0946 ER-Golgi vesicle-tethe 95.0 8.1 0.00018 48.1 25.3 14 768-781 763-776 (970)
158 PF05622 HOOK: HOOK protein; 95.0 0.0065 1.4E-07 73.1 0.0 56 812-867 364-419 (713)
159 PF05483 SCP-1: Synaptonemal c 95.0 13 0.00027 45.8 31.2 63 664-726 419-481 (786)
160 TIGR01000 bacteriocin_acc bact 94.8 7.3 0.00016 45.0 23.6 7 556-562 62-68 (457)
161 PF07926 TPR_MLP1_2: TPR/MLP1/ 94.7 1.4 3.1E-05 43.0 15.1 31 799-829 100-130 (132)
162 KOG4809 Rab6 GTPase-interactin 94.7 9.3 0.0002 45.9 23.9 60 663-722 327-386 (654)
163 PLN03229 acetyl-coenzyme A car 94.7 2.5 5.5E-05 52.0 20.1 46 711-756 556-614 (762)
164 KOG4593 Mitotic checkpoint pro 94.7 15 0.00033 45.2 29.1 15 768-782 195-209 (716)
165 TIGR02977 phageshock_pspA phag 94.6 6.8 0.00015 41.3 21.1 66 789-854 84-149 (219)
166 PF14915 CCDC144C: CCDC144C pr 94.6 10 0.00022 42.6 27.7 38 788-825 205-242 (305)
167 KOG0999 Microtubule-associated 94.6 13 0.00028 44.9 24.6 30 663-692 46-75 (772)
168 KOG0243 Kinesin-like protein [ 94.5 20 0.00044 46.0 29.4 60 630-691 406-472 (1041)
169 PF13166 AAA_13: AAA domain 94.5 12 0.00025 45.2 25.1 22 663-684 268-290 (712)
170 KOG0963 Transcription factor/C 94.4 16 0.00035 44.4 28.5 25 657-681 12-36 (629)
171 PF15066 CAGE1: Cancer-associa 94.4 10 0.00022 44.8 23.0 74 663-736 341-424 (527)
172 PLN02939 transferase, transfer 94.3 22 0.00047 45.6 29.1 49 663-711 131-179 (977)
173 PF05010 TACC: Transforming ac 94.3 8.8 0.00019 41.0 23.5 17 769-785 68-84 (207)
174 PF15450 DUF4631: Domain of un 94.2 16 0.00035 43.7 25.7 35 808-842 409-443 (531)
175 PF09787 Golgin_A5: Golgin sub 94.2 7.3 0.00016 46.0 22.3 23 664-686 113-135 (511)
176 PF01576 Myosin_tail_1: Myosin 94.2 0.013 2.9E-07 72.2 0.0 110 762-877 319-429 (859)
177 PF05622 HOOK: HOOK protein; 94.1 0.014 3.1E-07 70.3 0.0 16 739-754 325-340 (713)
178 TIGR03017 EpsF chain length de 93.9 14 0.00031 41.9 23.5 20 649-669 130-149 (444)
179 PF15397 DUF4618: Domain of un 93.9 9.3 0.0002 42.1 20.6 28 804-831 193-220 (258)
180 KOG4360 Uncharacterized coiled 93.8 6.1 0.00013 47.0 20.2 31 693-723 95-125 (596)
181 PF04912 Dynamitin: Dynamitin 93.7 7.8 0.00017 44.1 20.5 139 739-889 209-365 (388)
182 KOG4572 Predicted DNA-binding 93.6 26 0.00056 44.1 25.2 111 663-781 918-1034(1424)
183 KOG2129 Uncharacterized conser 93.6 17 0.00037 42.6 22.7 25 811-835 201-225 (552)
184 KOG0980 Actin-binding protein 93.6 27 0.0006 44.1 29.5 42 694-735 357-398 (980)
185 PF09789 DUF2353: Uncharacteri 93.5 17 0.00036 41.3 25.3 34 674-707 16-49 (319)
186 KOG1850 Myosin-like coiled-coi 93.4 17 0.00037 41.3 25.8 123 766-895 207-331 (391)
187 PF01576 Myosin_tail_1: Myosin 93.4 0.022 4.8E-07 70.3 0.0 21 739-759 454-474 (859)
188 KOG4302 Microtubule-associated 93.3 7.2 0.00016 47.8 20.4 71 663-733 64-141 (660)
189 PF09730 BicD: Microtubule-ass 93.2 10 0.00022 47.0 21.6 36 698-733 30-65 (717)
190 PRK11281 hypothetical protein; 93.2 37 0.00079 44.3 28.4 45 813-857 287-331 (1113)
191 TIGR03017 EpsF chain length de 93.1 19 0.00041 40.9 26.4 26 669-694 173-198 (444)
192 KOG1853 LIS1-interacting prote 93.1 6.2 0.00014 43.5 17.5 120 694-822 51-182 (333)
193 PF14197 Cep57_CLD_2: Centroso 93.1 1.1 2.4E-05 40.1 10.0 66 664-729 2-67 (69)
194 PF12325 TMF_TATA_bd: TATA ele 92.7 4 8.8E-05 40.1 14.3 22 738-759 15-36 (120)
195 PF09766 FimP: Fms-interacting 92.7 2.8 6E-05 47.5 15.0 115 791-905 95-209 (355)
196 PF13949 ALIX_LYPXL_bnd: ALIX 92.7 17 0.00036 39.1 30.9 35 845-879 240-274 (296)
197 PF04111 APG6: Autophagy prote 92.7 2.7 5.8E-05 46.9 14.7 37 816-852 55-91 (314)
198 KOG0243 Kinesin-like protein [ 92.7 20 0.00044 45.9 23.4 64 669-732 406-471 (1041)
199 PF13949 ALIX_LYPXL_bnd: ALIX 92.7 17 0.00036 39.1 26.9 34 853-886 241-274 (296)
200 PF15450 DUF4631: Domain of un 92.7 28 0.00062 41.7 25.2 51 826-876 420-471 (531)
201 PF10146 zf-C4H2: Zinc finger- 92.5 5.3 0.00011 43.1 16.1 68 820-887 34-101 (230)
202 PF04949 Transcrip_act: Transc 92.5 5.3 0.00011 40.9 15.0 63 808-870 81-143 (159)
203 PLN03229 acetyl-coenzyme A car 92.5 18 0.00038 45.1 22.1 22 658-679 453-474 (762)
204 PF04111 APG6: Autophagy prote 92.4 2.8 6E-05 46.8 14.4 84 802-885 48-131 (314)
205 PF09755 DUF2046: Uncharacteri 92.4 23 0.00049 40.1 25.0 200 663-871 80-293 (310)
206 PF04156 IncA: IncA protein; 92.4 5.5 0.00012 40.4 15.4 26 668-693 82-107 (191)
207 PF06705 SF-assemblin: SF-asse 92.3 18 0.00039 38.7 29.3 27 741-767 87-113 (247)
208 COG1842 PspA Phage shock prote 92.1 20 0.00043 38.7 20.8 61 792-852 87-147 (225)
209 PF15066 CAGE1: Cancer-associa 92.0 12 0.00027 44.2 19.1 15 799-813 413-427 (527)
210 cd09234 V_HD-PTP_like Protein- 91.7 26 0.00057 39.3 28.5 52 829-880 269-320 (337)
211 PF15290 Syntaphilin: Golgi-lo 91.7 4.7 0.0001 44.8 14.6 72 704-787 70-141 (305)
212 PF13870 DUF4201: Domain of un 91.6 17 0.00037 37.0 20.9 18 739-756 42-59 (177)
213 PRK10869 recombination and rep 91.5 38 0.00082 40.7 27.5 45 663-707 153-197 (553)
214 KOG1937 Uncharacterized conser 91.5 36 0.00078 40.4 24.9 19 628-646 184-202 (521)
215 PF05557 MAD: Mitotic checkpoi 91.5 0.055 1.2E-06 65.4 0.0 15 743-757 227-241 (722)
216 PRK10246 exonuclease subunit S 91.5 53 0.0012 42.3 30.8 23 862-884 779-801 (1047)
217 PF13851 GAS: Growth-arrest sp 91.4 21 0.00046 37.6 22.9 28 804-831 100-127 (201)
218 PF09304 Cortex-I_coil: Cortex 91.4 6.2 0.00013 38.4 13.4 70 810-879 15-84 (107)
219 PF10234 Cluap1: Clusterin-ass 91.3 6.1 0.00013 43.7 15.2 73 805-877 170-242 (267)
220 PF13870 DUF4201: Domain of un 91.2 16 0.00034 37.2 17.1 41 826-866 92-132 (177)
221 COG4026 Uncharacterized protei 91.1 3.8 8.3E-05 44.4 13.0 75 801-875 132-206 (290)
222 cd09235 V_Alix Middle V-domain 91.1 31 0.00067 38.8 26.1 37 846-882 288-324 (339)
223 KOG0239 Kinesin (KAR3 subfamil 91.0 13 0.00027 45.9 18.9 56 804-859 241-296 (670)
224 PF08614 ATG16: Autophagy prot 90.9 4.8 0.0001 41.6 13.3 54 804-857 116-169 (194)
225 PF05911 DUF869: Plant protein 90.9 54 0.0012 41.3 26.4 56 670-725 20-75 (769)
226 PF05557 MAD: Mitotic checkpoi 90.8 3.4 7.3E-05 50.5 14.1 27 802-828 508-534 (722)
227 PF09787 Golgin_A5: Golgin sub 90.8 42 0.0009 39.9 26.6 26 866-891 336-361 (511)
228 PF10473 CENP-F_leu_zip: Leuci 90.6 10 0.00022 38.3 14.8 68 663-730 20-87 (140)
229 PF14915 CCDC144C: CCDC144C pr 90.4 36 0.00077 38.5 30.2 28 835-862 217-244 (305)
230 PF07106 TBPIP: Tat binding pr 90.4 4.3 9.4E-05 40.9 12.2 21 861-881 146-166 (169)
231 KOG4438 Centromere-associated 90.2 45 0.00098 39.3 28.0 45 738-782 240-288 (446)
232 KOG1899 LAR transmembrane tyro 90.1 23 0.0005 43.3 19.3 173 737-911 102-298 (861)
233 PRK10361 DNA recombination pro 89.9 50 0.0011 39.4 22.1 37 839-875 147-183 (475)
234 PRK10884 SH3 domain-containing 89.9 2.4 5.3E-05 44.9 10.3 11 771-781 94-104 (206)
235 KOG4360 Uncharacterized coiled 89.7 20 0.00044 42.9 18.2 19 740-758 199-217 (596)
236 KOG1899 LAR transmembrane tyro 89.7 24 0.00053 43.2 19.1 51 663-713 107-157 (861)
237 KOG2273 Membrane coat complex 89.6 48 0.001 38.9 25.0 49 664-716 278-326 (503)
238 PF04012 PspA_IM30: PspA/IM30 89.6 29 0.00062 36.2 26.3 62 791-852 85-146 (221)
239 PLN03188 kinesin-12 family pro 89.6 39 0.00084 44.4 21.8 35 747-781 1156-1191(1320)
240 PF03962 Mnd1: Mnd1 family; I 89.6 6.4 0.00014 41.0 13.0 27 878-904 139-167 (188)
241 smart00502 BBC B-Box C-termina 89.6 17 0.00036 33.4 15.2 32 863-894 75-106 (127)
242 PF10481 CENP-F_N: Cenp-F N-te 89.5 29 0.00063 38.8 18.2 14 895-908 164-177 (307)
243 COG0497 RecN ATPase involved i 89.5 58 0.0013 39.6 26.1 41 854-894 336-376 (557)
244 KOG3647 Predicted coiled-coil 89.4 37 0.0008 38.1 18.8 38 801-838 137-174 (338)
245 PF07926 TPR_MLP1_2: TPR/MLP1/ 89.4 23 0.0005 34.7 17.3 60 828-887 62-121 (132)
246 KOG0982 Centrosomal protein Nu 89.3 53 0.0012 38.8 23.0 28 797-824 367-394 (502)
247 PF07106 TBPIP: Tat binding pr 89.2 6.5 0.00014 39.6 12.4 88 802-889 77-167 (169)
248 PF11932 DUF3450: Protein of u 89.1 32 0.0007 36.8 18.2 32 800-831 52-83 (251)
249 COG2433 Uncharacterized conser 88.7 6.9 0.00015 47.4 13.9 112 663-780 425-541 (652)
250 PF11559 ADIP: Afadin- and alp 88.6 27 0.00058 34.6 16.9 80 795-874 50-129 (151)
251 PF14988 DUF4515: Domain of un 88.6 37 0.0008 36.1 22.2 69 711-779 49-123 (206)
252 KOG2129 Uncharacterized conser 88.5 59 0.0013 38.4 21.7 17 861-877 314-330 (552)
253 cd08915 V_Alix_like Protein-in 88.3 47 0.001 37.0 29.0 36 844-879 289-324 (342)
254 PF08614 ATG16: Autophagy prot 88.3 8.4 0.00018 39.8 12.8 59 806-864 125-183 (194)
255 KOG0804 Cytoplasmic Zn-finger 88.3 13 0.00028 43.8 15.3 27 587-613 176-204 (493)
256 PF04012 PspA_IM30: PspA/IM30 88.2 25 0.00054 36.7 16.2 15 740-754 59-73 (221)
257 PF06818 Fez1: Fez1; InterPro 87.9 42 0.00092 36.0 20.3 33 839-871 152-184 (202)
258 PF15254 CCDC14: Coiled-coil d 87.9 49 0.0011 41.6 20.3 27 825-851 494-520 (861)
259 PF05278 PEARLI-4: Arabidopsis 87.7 35 0.00076 38.0 17.5 102 740-852 147-248 (269)
260 cd07666 BAR_SNX7 The Bin/Amphi 87.6 48 0.001 36.3 23.9 46 797-842 156-201 (243)
261 KOG0804 Cytoplasmic Zn-finger 87.2 20 0.00044 42.3 15.9 53 675-727 348-400 (493)
262 KOG4302 Microtubule-associated 87.1 88 0.0019 38.9 25.0 33 842-874 229-261 (660)
263 KOG0244 Kinesin-like protein [ 87.1 33 0.00072 43.6 18.7 46 665-710 328-378 (913)
264 KOG1853 LIS1-interacting prote 87.1 56 0.0012 36.5 21.3 44 848-891 135-178 (333)
265 COG4026 Uncharacterized protei 87.0 4 8.8E-05 44.2 9.7 63 663-725 138-200 (290)
266 PF10498 IFT57: Intra-flagella 86.7 15 0.00033 42.0 14.7 47 686-732 250-296 (359)
267 PF15294 Leu_zip: Leucine zipp 86.6 11 0.00024 41.9 13.1 50 663-712 128-177 (278)
268 KOG2991 Splicing regulator [RN 86.6 41 0.00089 37.5 17.0 172 651-831 108-305 (330)
269 PTZ00440 reticulocyte binding 86.3 1.5E+02 0.0033 42.1 25.3 259 636-908 1050-1323(2722)
270 TIGR03545 conserved hypothetic 86.2 29 0.00062 42.0 17.2 28 864-891 289-316 (555)
271 PF04065 Not3: Not1 N-terminal 86.1 44 0.00096 36.4 17.0 57 664-720 5-63 (233)
272 PF03915 AIP3: Actin interacti 86.1 41 0.00088 39.6 17.9 23 668-690 86-108 (424)
273 PF10481 CENP-F_N: Cenp-F N-te 86.1 48 0.001 37.2 17.3 25 761-785 64-89 (307)
274 TIGR02894 DNA_bind_RsfA transc 85.9 17 0.00038 37.6 13.1 51 808-858 101-151 (161)
275 COG0497 RecN ATPase involved i 85.8 50 0.0011 40.2 18.7 24 858-881 347-370 (557)
276 PRK09841 cryptic autophosphory 85.8 38 0.00083 41.7 18.4 37 632-669 206-245 (726)
277 PF12795 MscS_porin: Mechanose 85.7 54 0.0012 35.0 22.7 17 741-757 122-138 (240)
278 PF11559 ADIP: Afadin- and alp 85.6 20 0.00043 35.5 13.2 10 682-691 53-62 (151)
279 KOG0239 Kinesin (KAR3 subfamil 85.6 65 0.0014 40.0 20.0 51 827-877 243-293 (670)
280 TIGR03545 conserved hypothetic 85.4 9.7 0.00021 45.8 12.9 52 809-863 217-268 (555)
281 cd07596 BAR_SNX The Bin/Amphip 85.4 43 0.00093 33.7 26.2 25 814-838 148-172 (218)
282 PRK10361 DNA recombination pro 85.4 91 0.002 37.4 21.7 20 813-832 142-161 (475)
283 PF09738 DUF2051: Double stran 85.4 11 0.00024 42.2 12.6 20 708-727 146-165 (302)
284 PF05384 DegS: Sensor protein 85.4 49 0.0011 34.2 20.5 109 673-781 5-116 (159)
285 PRK10884 SH3 domain-containing 85.2 8.2 0.00018 41.0 10.9 20 663-682 96-115 (206)
286 PF11932 DUF3450: Protein of u 85.2 35 0.00075 36.6 15.8 92 739-843 21-116 (251)
287 cd07667 BAR_SNX30 The Bin/Amph 85.0 65 0.0014 35.4 23.6 58 816-879 172-229 (240)
288 PF06009 Laminin_II: Laminin D 85.0 0.28 6E-06 48.3 0.0 92 801-892 14-108 (138)
289 smart00283 MA Methyl-accepting 84.9 48 0.001 33.8 30.7 6 771-776 134-139 (262)
290 PF12252 SidE: Dot/Icm substra 84.8 1.2E+02 0.0026 39.7 21.5 13 363-375 667-679 (1439)
291 PRK03947 prefoldin subunit alp 84.7 13 0.00028 36.3 11.4 44 802-845 92-135 (140)
292 PF15254 CCDC14: Coiled-coil d 84.6 45 0.00099 41.8 17.8 13 500-512 247-259 (861)
293 COG2433 Uncharacterized conser 84.5 32 0.0007 42.0 16.3 6 608-613 273-278 (652)
294 smart00806 AIP3 Actin interact 84.5 95 0.002 36.8 28.4 58 739-796 224-283 (426)
295 TIGR01612 235kDa-fam reticuloc 84.5 2E+02 0.0044 40.6 27.6 46 661-706 1105-1150(2757)
296 PF12795 MscS_porin: Mechanose 84.4 61 0.0013 34.6 24.4 21 738-758 77-97 (240)
297 PF14197 Cep57_CLD_2: Centroso 84.3 13 0.00029 33.4 10.1 57 824-880 11-67 (69)
298 PF06005 DUF904: Protein of un 84.1 22 0.00048 32.2 11.6 15 854-868 54-68 (72)
299 KOG1103 Predicted coiled-coil 84.1 42 0.00092 38.7 16.2 41 693-733 112-156 (561)
300 smart00503 SynN Syntaxin N-ter 84.1 35 0.00076 31.5 13.6 27 859-885 88-114 (117)
301 COG5293 Predicted ATPase [Gene 84.0 1.1E+02 0.0023 36.9 25.2 27 761-787 331-359 (591)
302 PF06120 Phage_HK97_TLTM: Tail 83.7 85 0.0018 35.6 20.3 8 743-750 99-106 (301)
303 cd00179 SynN Syntaxin N-termin 83.6 32 0.00069 33.4 13.4 118 796-913 5-142 (151)
304 PF03962 Mnd1: Mnd1 family; I 83.2 11 0.00023 39.5 10.6 114 608-725 9-126 (188)
305 PF14992 TMCO5: TMCO5 family 82.9 66 0.0014 36.2 16.8 95 738-840 83-182 (280)
306 PF15035 Rootletin: Ciliary ro 82.8 59 0.0013 34.1 15.7 32 858-891 139-170 (182)
307 PF10234 Cluap1: Clusterin-ass 82.7 28 0.00061 38.6 14.0 81 799-879 178-258 (267)
308 COG1842 PspA Phage shock prote 82.5 62 0.0013 35.0 16.2 14 768-781 90-103 (225)
309 PF06005 DUF904: Protein of un 82.2 30 0.00066 31.4 11.6 27 805-831 19-45 (72)
310 PRK11519 tyrosine kinase; Prov 82.1 71 0.0015 39.5 18.6 37 633-670 207-246 (719)
311 KOG4603 TBP-1 interacting prot 82.1 21 0.00045 37.7 11.9 91 762-876 91-182 (201)
312 cd09236 V_AnPalA_UmRIM20_like 82.1 97 0.0021 35.2 27.0 37 844-880 300-336 (353)
313 PF02403 Seryl_tRNA_N: Seryl-t 82.1 32 0.00069 32.2 12.3 23 761-783 33-56 (108)
314 KOG4603 TBP-1 interacting prot 82.1 57 0.0012 34.6 15.0 31 863-893 155-185 (201)
315 cd09234 V_HD-PTP_like Protein- 82.1 94 0.002 35.0 30.1 63 828-890 261-323 (337)
316 PF07889 DUF1664: Protein of u 82.0 25 0.00054 35.1 12.1 51 799-849 63-113 (126)
317 PF05911 DUF869: Plant protein 81.9 1.6E+02 0.0034 37.4 24.3 62 666-727 23-85 (769)
318 PF00769 ERM: Ezrin/radixin/mo 81.8 84 0.0018 34.2 17.1 13 872-884 108-120 (246)
319 PF08647 BRE1: BRE1 E3 ubiquit 81.5 29 0.00063 32.6 11.8 59 674-732 3-61 (96)
320 cd09237 V_ScBro1_like Protein- 81.5 1E+02 0.0022 34.9 27.9 33 844-876 303-335 (356)
321 PF06548 Kinesin-related: Kine 81.3 1.3E+02 0.0028 36.0 26.7 51 830-880 432-482 (488)
322 KOG0240 Kinesin (SMY1 subfamil 81.2 70 0.0015 39.1 17.3 86 818-904 414-499 (607)
323 cd07624 BAR_SNX7_30 The Bin/Am 81.2 74 0.0016 33.2 23.4 17 663-679 17-33 (200)
324 cd09237 V_ScBro1_like Protein- 81.0 1E+02 0.0023 34.8 22.9 40 850-889 302-341 (356)
325 KOG4572 Predicted DNA-binding 80.8 1.8E+02 0.0038 37.3 22.3 36 286-321 573-612 (1424)
326 KOG0288 WD40 repeat protein Ti 80.8 55 0.0012 38.6 15.8 108 801-908 31-148 (459)
327 KOG1103 Predicted coiled-coil 80.8 1.2E+02 0.0026 35.3 18.9 67 655-724 50-126 (561)
328 cd09238 V_Alix_like_1 Protein- 80.6 1.1E+02 0.0023 34.7 25.2 33 845-877 287-319 (339)
329 PRK05431 seryl-tRNA synthetase 80.4 4.3 9.3E-05 47.0 7.2 27 761-787 32-59 (425)
330 KOG3647 Predicted coiled-coil 80.2 45 0.00097 37.4 14.2 16 711-726 48-63 (338)
331 PF03148 Tektin: Tektin family 80.2 1.2E+02 0.0026 35.0 27.1 27 697-723 139-165 (384)
332 KOG0249 LAR-interacting protei 80.1 1.8E+02 0.0038 36.8 20.9 14 804-817 244-257 (916)
333 COG5283 Phage-related tail pro 80.0 2.1E+02 0.0047 37.8 25.5 47 711-759 66-112 (1213)
334 TIGR02338 gimC_beta prefoldin, 80.0 28 0.00061 33.1 11.4 35 815-849 71-105 (110)
335 PLN02939 transferase, transfer 79.6 2.1E+02 0.0045 37.3 28.2 23 710-732 227-249 (977)
336 PF15035 Rootletin: Ciliary ro 79.4 51 0.0011 34.6 13.9 20 768-787 14-33 (182)
337 PRK09343 prefoldin subunit bet 79.2 37 0.00081 33.1 12.1 21 826-846 86-106 (121)
338 PF06548 Kinesin-related: Kine 79.2 1.5E+02 0.0032 35.5 23.1 34 748-781 387-421 (488)
339 PF07111 HCR: Alpha helical co 78.9 1.9E+02 0.004 36.4 32.4 114 665-783 138-262 (739)
340 KOG0288 WD40 repeat protein Ti 78.6 48 0.001 39.0 14.5 54 664-717 17-70 (459)
341 PF06785 UPF0242: Uncharacteri 78.6 63 0.0014 37.3 15.0 49 671-719 103-151 (401)
342 PF06810 Phage_GP20: Phage min 78.5 30 0.00066 35.2 11.7 45 707-757 25-69 (155)
343 PRK09343 prefoldin subunit bet 78.5 37 0.0008 33.2 11.8 40 807-846 74-113 (121)
344 PF01920 Prefoldin_2: Prefoldi 78.3 34 0.00075 31.2 11.1 27 817-843 68-94 (106)
345 PLN02678 seryl-tRNA synthetase 77.9 5.7 0.00012 46.6 7.2 27 761-787 37-64 (448)
346 cd07656 F-BAR_srGAP The F-BAR 77.9 1.1E+02 0.0024 33.3 17.8 76 812-887 118-203 (241)
347 cd00632 Prefoldin_beta Prefold 77.8 37 0.00079 32.0 11.3 15 761-775 28-42 (105)
348 cd07657 F-BAR_Fes_Fer The F-BA 77.7 1.1E+02 0.0024 33.2 20.1 17 826-842 127-143 (237)
349 KOG2196 Nuclear porin [Nuclear 77.7 1.2E+02 0.0026 33.6 18.4 87 671-759 75-161 (254)
350 KOG2264 Exostosin EXT1L [Signa 77.6 17 0.00037 44.0 10.8 48 798-845 101-148 (907)
351 KOG4403 Cell surface glycoprot 77.4 58 0.0012 38.6 14.6 22 459-480 21-42 (575)
352 PF14992 TMCO5: TMCO5 family 76.5 1.4E+02 0.003 33.7 17.2 22 714-735 23-44 (280)
353 PF03904 DUF334: Domain of unk 76.5 63 0.0014 35.4 13.8 10 771-780 44-53 (230)
354 PRK15422 septal ring assembly 76.5 30 0.00065 32.3 9.8 26 806-831 20-45 (79)
355 KOG0163 Myosin class VI heavy 76.1 2.3E+02 0.0051 36.1 21.3 25 391-415 395-419 (1259)
356 TIGR00020 prfB peptide chain r 76.0 48 0.001 38.3 13.6 64 718-781 2-67 (364)
357 KOG4807 F-actin binding protei 75.7 1.8E+02 0.0038 34.5 20.9 15 477-491 158-172 (593)
358 PF06818 Fez1: Fez1; InterPro 75.6 1.2E+02 0.0027 32.6 23.6 64 669-732 12-75 (202)
359 PF10498 IFT57: Intra-flagella 75.5 57 0.0012 37.6 14.0 24 761-787 329-352 (359)
360 PF06103 DUF948: Bacterial pro 75.4 45 0.00096 30.4 10.8 64 810-873 25-88 (90)
361 PF06810 Phage_GP20: Phage min 75.3 74 0.0016 32.5 13.4 84 664-748 17-106 (155)
362 cd08915 V_Alix_like Protein-in 75.1 1.5E+02 0.0032 33.3 27.6 35 852-886 290-324 (342)
363 cd07657 F-BAR_Fes_Fer The F-BA 75.1 1.3E+02 0.0028 32.6 16.3 67 811-877 126-199 (237)
364 PF12329 TMF_DNA_bd: TATA elem 74.5 51 0.0011 29.9 10.7 30 813-842 35-64 (74)
365 PF08826 DMPK_coil: DMPK coile 74.5 36 0.00078 30.2 9.5 49 797-845 11-59 (61)
366 KOG3091 Nuclear pore complex, 74.4 1.7E+02 0.0036 35.4 17.6 19 352-370 73-91 (508)
367 KOG1962 B-cell receptor-associ 74.4 51 0.0011 35.7 12.5 55 814-868 154-208 (216)
368 PF07889 DUF1664: Protein of u 74.4 45 0.00098 33.3 11.3 54 697-752 70-123 (126)
369 KOG4286 Dystrophin-like protei 74.3 2.3E+02 0.0049 36.1 19.0 94 799-892 187-294 (966)
370 PF04949 Transcrip_act: Transc 74.3 1.1E+02 0.0025 31.7 16.8 62 807-868 62-127 (159)
371 cd00176 SPEC Spectrin repeats, 73.9 90 0.002 30.3 19.6 40 715-754 6-45 (213)
372 COG3206 GumC Uncharacterized p 73.6 1.8E+02 0.004 33.8 22.1 35 637-672 140-176 (458)
373 COG4913 Uncharacterized protei 73.5 2.7E+02 0.0058 35.6 22.8 211 687-903 615-851 (1104)
374 cd00632 Prefoldin_beta Prefold 73.5 24 0.00051 33.2 8.8 26 805-830 71-96 (105)
375 PF03961 DUF342: Protein of un 73.2 25 0.00055 40.8 10.8 73 663-735 330-408 (451)
376 TIGR01612 235kDa-fam reticuloc 73.1 4.3E+02 0.0094 37.8 26.1 64 836-899 1108-1172(2757)
377 PF10368 YkyA: Putative cell-w 73.0 1.3E+02 0.0029 31.9 15.5 39 853-891 160-198 (204)
378 PF03999 MAP65_ASE1: Microtubu 73.0 1.2 2.5E-05 53.6 0.1 36 867-902 330-366 (619)
379 PF12329 TMF_DNA_bd: TATA elem 72.9 60 0.0013 29.5 10.8 18 713-730 51-68 (74)
380 TIGR03794 NHPM_micro_HlyD NHPM 72.8 1.8E+02 0.0039 33.3 19.3 28 661-688 90-117 (421)
381 PF15290 Syntaphilin: Golgi-lo 72.8 48 0.001 37.3 12.1 61 676-736 70-137 (305)
382 COG5244 NIP100 Dynactin comple 72.7 24 0.00053 42.0 10.3 107 768-881 182-288 (669)
383 PRK00578 prfB peptide chain re 72.6 87 0.0019 36.3 14.6 62 720-781 4-67 (367)
384 PF07111 HCR: Alpha helical co 72.6 2.7E+02 0.0058 35.2 30.9 20 808-827 475-494 (739)
385 cd00890 Prefoldin Prefoldin is 72.6 46 0.00099 31.4 10.6 36 806-841 89-124 (129)
386 cd00890 Prefoldin Prefoldin is 72.1 20 0.00043 33.9 8.1 32 803-834 93-124 (129)
387 KOG1962 B-cell receptor-associ 72.0 41 0.00089 36.4 11.1 44 839-882 158-201 (216)
388 KOG4403 Cell surface glycoprot 72.0 2.3E+02 0.0049 34.0 19.8 49 801-849 358-414 (575)
389 PF12777 MT: Microtubule-bindi 71.9 78 0.0017 35.7 13.9 36 796-831 7-42 (344)
390 PF00015 MCPsignal: Methyl-acc 71.8 1.1E+02 0.0025 30.6 20.8 18 739-756 75-92 (213)
391 PF03148 Tektin: Tektin family 71.8 2E+02 0.0043 33.3 25.6 30 663-692 60-89 (384)
392 PF06785 UPF0242: Uncharacteri 71.3 2.1E+02 0.0045 33.3 18.4 16 862-877 203-218 (401)
393 PF06717 DUF1202: Protein of u 70.8 1.9E+02 0.0042 32.8 18.2 46 662-707 133-178 (308)
394 KOG0972 Huntingtin interacting 70.8 1.1E+02 0.0025 34.8 14.4 98 685-787 256-359 (384)
395 KOG0249 LAR-interacting protei 70.6 3E+02 0.0065 34.9 22.0 39 807-845 219-257 (916)
396 PF05266 DUF724: Protein of un 70.5 82 0.0018 33.3 12.8 35 739-781 86-121 (190)
397 PRK00409 recombination and DNA 70.5 81 0.0018 39.7 14.9 11 596-606 328-338 (782)
398 PF09325 Vps5: Vps5 C terminal 70.4 1.4E+02 0.003 31.0 24.9 34 829-862 167-200 (236)
399 PHA01750 hypothetical protein 70.2 24 0.00052 32.1 7.5 41 799-839 29-70 (75)
400 PLN03188 kinesin-12 family pro 70.1 3.8E+02 0.0083 36.0 25.8 50 829-878 1201-1250(1320)
401 KOG1655 Protein involved in va 70.0 1.4E+02 0.003 32.4 14.2 86 768-859 68-153 (218)
402 KOG4593 Mitotic checkpoint pro 70.0 3E+02 0.0065 34.7 30.8 38 661-698 238-275 (716)
403 PF15294 Leu_zip: Leucine zipp 70.0 1.3E+02 0.0027 34.0 14.6 27 800-826 218-244 (278)
404 COG1730 GIM5 Predicted prefold 69.5 94 0.002 31.8 12.5 48 801-848 91-138 (145)
405 TIGR00414 serS seryl-tRNA synt 69.5 57 0.0012 37.9 12.5 27 761-787 34-61 (418)
406 PF05266 DUF724: Protein of un 69.2 1.6E+02 0.0035 31.2 16.7 20 739-758 66-85 (190)
407 PF08826 DMPK_coil: DMPK coile 69.2 72 0.0016 28.4 10.1 47 684-730 14-60 (61)
408 TIGR01010 BexC_CtrB_KpsE polys 69.1 1.5E+02 0.0033 33.3 15.4 59 723-785 170-229 (362)
409 COG4717 Uncharacterized conser 69.1 3.5E+02 0.0075 35.1 25.0 47 663-709 609-655 (984)
410 TIGR02338 gimC_beta prefoldin, 69.0 29 0.00062 33.1 8.4 27 817-843 80-106 (110)
411 TIGR02231 conserved hypothetic 68.9 43 0.00093 39.6 11.6 28 810-837 137-164 (525)
412 PF04582 Reo_sigmaC: Reovirus 68.8 10 0.00022 43.0 6.2 48 805-852 106-153 (326)
413 PRK09841 cryptic autophosphory 68.3 1.9E+02 0.0041 35.9 17.2 40 741-782 283-323 (726)
414 TIGR02231 conserved hypothetic 68.3 64 0.0014 38.1 12.8 13 768-780 76-88 (525)
415 PF03114 BAR: BAR domain; Int 68.3 1.3E+02 0.0029 29.9 24.0 36 687-722 25-60 (229)
416 PF11172 DUF2959: Protein of u 68.3 70 0.0015 34.4 11.7 59 631-696 35-93 (201)
417 PLN02320 seryl-tRNA synthetase 68.2 55 0.0012 39.4 12.2 25 761-785 97-122 (502)
418 cd00176 SPEC Spectrin repeats, 68.1 1.2E+02 0.0026 29.4 18.8 94 663-759 36-133 (213)
419 TIGR01069 mutS2 MutS2 family p 67.7 1.3E+02 0.0028 38.0 15.7 8 596-603 323-330 (771)
420 PRK00409 recombination and DNA 67.5 1.6E+02 0.0035 37.2 16.5 14 768-781 518-531 (782)
421 PF09403 FadA: Adhesion protei 67.3 1.3E+02 0.0029 30.1 12.8 15 768-782 25-39 (126)
422 KOG2150 CCR4-NOT transcription 67.0 1.9E+02 0.0042 35.4 16.2 56 664-719 5-62 (575)
423 PF01496 V_ATPase_I: V-type AT 66.7 18 0.00039 44.6 8.3 7 894-900 301-307 (759)
424 COG3096 MukB Uncharacterized p 66.7 3.7E+02 0.008 34.5 24.1 221 654-887 880-1114(1480)
425 smart00502 BBC B-Box C-termina 66.5 1.1E+02 0.0023 28.1 15.0 110 664-775 4-124 (127)
426 KOG2150 CCR4-NOT transcription 66.3 2.9E+02 0.0063 34.0 17.4 69 671-747 5-73 (575)
427 PF03670 UPF0184: Uncharacteri 66.1 31 0.00068 32.4 7.7 49 673-721 25-73 (83)
428 PF10205 KLRAQ: Predicted coil 65.9 1.1E+02 0.0023 29.9 11.5 69 665-733 3-71 (102)
429 TIGR03752 conj_TIGR03752 integ 65.8 71 0.0015 38.2 12.3 19 850-868 120-138 (472)
430 KOG4196 bZIP transcription fac 65.6 57 0.0012 33.1 9.8 13 770-782 47-59 (135)
431 PF14362 DUF4407: Domain of un 65.4 2.2E+02 0.0047 31.3 17.4 30 834-863 184-213 (301)
432 TIGR01010 BexC_CtrB_KpsE polys 65.2 2.4E+02 0.0052 31.7 21.5 38 634-672 112-151 (362)
433 PLN02678 seryl-tRNA synthetase 65.1 68 0.0015 38.0 12.1 10 770-779 33-42 (448)
434 PF05529 Bap31: B-cell recepto 65.0 27 0.00058 36.0 7.9 70 768-842 123-192 (192)
435 TIGR02894 DNA_bind_RsfA transc 64.9 1.6E+02 0.0034 30.9 13.1 30 862-891 127-156 (161)
436 PF09763 Sec3_C: Exocyst compl 64.9 3.4E+02 0.0075 33.5 23.4 50 681-730 23-72 (701)
437 KOG0517 Beta-spectrin [Cytoske 64.6 5.8E+02 0.013 36.0 28.8 115 669-784 1311-1429(2473)
438 PF09304 Cortex-I_coil: Cortex 64.4 1.5E+02 0.0033 29.2 14.3 46 805-850 31-76 (107)
439 PF04912 Dynamitin: Dynamitin 64.2 2.7E+02 0.0059 32.0 25.2 44 716-759 209-259 (388)
440 cd07623 BAR_SNX1_2 The Bin/Amp 64.0 2E+02 0.0044 30.6 24.0 26 663-688 15-40 (224)
441 KOG0244 Kinesin-like protein [ 64.0 4.3E+02 0.0094 34.3 21.9 14 339-352 122-135 (913)
442 smart00806 AIP3 Actin interact 64.0 3.1E+02 0.0068 32.7 20.8 35 665-699 83-117 (426)
443 cd07686 F-BAR_Fer The F-BAR (F 63.9 2.3E+02 0.005 31.1 18.2 17 897-913 206-222 (234)
444 KOG4451 Uncharacterized conser 63.8 2.2E+02 0.0048 31.5 14.5 46 827-872 73-118 (286)
445 PF15233 SYCE1: Synaptonemal c 63.7 1.8E+02 0.0038 29.7 13.2 11 879-889 114-124 (134)
446 PF04728 LPP: Lipoprotein leuc 63.2 66 0.0014 28.3 8.6 11 809-819 15-25 (56)
447 KOG1003 Actin filament-coating 63.1 2.3E+02 0.0049 30.8 24.0 40 804-843 116-155 (205)
448 KOG3091 Nuclear pore complex, 63.0 3.5E+02 0.0076 32.9 20.3 86 663-755 337-427 (508)
449 PF14817 HAUS5: HAUS augmin-li 62.9 1.5E+02 0.0033 36.8 14.7 48 797-844 79-126 (632)
450 PF06248 Zw10: Centromere/kine 62.3 2.1E+02 0.0046 34.5 15.7 13 740-752 47-59 (593)
451 PF09755 DUF2046: Uncharacteri 62.1 2.9E+02 0.0063 31.7 30.0 37 663-699 23-59 (310)
452 PF04728 LPP: Lipoprotein leuc 61.6 75 0.0016 28.0 8.7 14 812-825 11-24 (56)
453 COG4717 Uncharacterized conser 61.6 4.7E+02 0.01 34.0 24.9 59 663-725 184-242 (984)
454 PRK11546 zraP zinc resistance 61.4 97 0.0021 31.8 10.8 7 761-767 43-49 (143)
455 PF10475 DUF2450: Protein of u 61.4 2.6E+02 0.0056 30.8 21.2 41 839-879 186-227 (291)
456 PRK11519 tyrosine kinase; Prov 61.0 3.2E+02 0.0069 34.0 17.3 39 741-781 283-322 (719)
457 PF09738 DUF2051: Double stran 60.7 1.9E+02 0.0041 32.9 14.0 29 799-827 107-135 (302)
458 COG3206 GumC Uncharacterized p 60.3 3.3E+02 0.0072 31.7 25.1 6 773-778 288-293 (458)
459 PRK15178 Vi polysaccharide exp 60.3 1.9E+02 0.0041 34.4 14.4 40 748-787 263-303 (434)
460 cd00584 Prefoldin_alpha Prefol 60.2 1.3E+02 0.0027 29.0 11.1 27 806-832 89-115 (129)
461 PLN02320 seryl-tRNA synthetase 60.1 51 0.0011 39.6 10.0 18 803-820 106-123 (502)
462 PF13747 DUF4164: Domain of un 60.0 1.5E+02 0.0033 27.8 11.2 51 814-864 35-85 (89)
463 PF06248 Zw10: Centromere/kine 59.6 2.2E+02 0.0048 34.4 15.3 21 739-759 7-27 (593)
464 PRK10636 putative ABC transpor 59.6 66 0.0014 39.1 11.1 34 840-873 599-632 (638)
465 COG3352 FlaC Putative archaeal 59.5 86 0.0019 32.6 10.1 20 862-881 117-136 (157)
466 PF05546 She9_MDM33: She9 / Md 59.4 2.7E+02 0.0058 30.3 16.9 80 805-884 33-116 (207)
467 PF02994 Transposase_22: L1 tr 59.2 29 0.00062 39.8 7.6 131 712-849 58-189 (370)
468 PRK10476 multidrug resistance 59.2 2.9E+02 0.0063 30.7 17.9 80 661-749 80-159 (346)
469 TIGR00833 actII Transport prot 59.2 4.9E+02 0.011 33.4 23.7 58 675-732 478-535 (910)
470 PRK05771 V-type ATP synthase s 59.1 3.5E+02 0.0075 33.2 16.9 29 704-732 95-123 (646)
471 PF05700 BCAS2: Breast carcino 58.8 1E+02 0.0022 32.9 11.1 40 694-733 174-213 (221)
472 cd07627 BAR_Vps5p The Bin/Amph 58.6 2.5E+02 0.0053 29.7 26.2 202 673-879 3-216 (216)
473 COG1730 GIM5 Predicted prefold 58.6 28 0.00061 35.5 6.5 132 710-846 7-143 (145)
474 PF14712 Snapin_Pallidin: Snap 58.3 1.3E+02 0.0028 27.4 10.2 71 665-736 12-84 (92)
475 KOG2751 Beclin-like protein [S 57.9 2.7E+02 0.0058 33.3 14.8 115 741-868 152-268 (447)
476 PF03961 DUF342: Protein of un 57.9 55 0.0012 38.1 9.7 78 801-879 331-408 (451)
477 PF06103 DUF948: Bacterial pro 57.9 84 0.0018 28.6 9.0 69 676-746 21-89 (90)
478 smart00283 MA Methyl-accepting 57.7 2.2E+02 0.0049 29.0 30.9 219 663-892 21-260 (262)
479 COG1382 GimC Prefoldin, chaper 57.6 1.7E+02 0.0036 29.4 11.4 85 767-851 7-110 (119)
480 KOG4460 Nuclear pore complex, 57.0 4.7E+02 0.01 32.5 17.7 154 670-828 584-740 (741)
481 PF10779 XhlA: Haemolysin XhlA 56.5 73 0.0016 28.3 8.1 50 800-849 2-51 (71)
482 TIGR00293 prefoldin, archaeal 56.5 89 0.0019 29.9 9.3 89 767-858 3-126 (126)
483 PF05478 Prominin: Prominin; 56.3 5.2E+02 0.011 32.8 23.4 182 670-880 228-413 (806)
484 PRK11546 zraP zinc resistance 56.2 54 0.0012 33.5 8.0 67 667-733 47-113 (143)
485 PF06632 XRCC4: DNA double-str 55.8 2.7E+02 0.0059 32.1 14.4 90 788-880 128-217 (342)
486 PF01496 V_ATPase_I: V-type AT 55.5 34 0.00073 42.3 7.9 216 675-892 11-282 (759)
487 PHA02414 hypothetical protein 55.1 93 0.002 30.3 8.9 84 716-799 4-93 (111)
488 PF06156 DUF972: Protein of un 54.9 97 0.0021 30.1 9.2 70 799-868 3-84 (107)
489 PRK14011 prefoldin subunit alp 54.8 23 0.0005 35.9 5.3 133 709-857 3-138 (144)
490 TIGR03752 conj_TIGR03752 integ 54.8 1.4E+02 0.0031 35.7 12.3 80 797-876 59-139 (472)
491 PTZ00440 reticulocyte binding 54.7 9.3E+02 0.02 35.2 30.9 242 664-909 533-817 (2722)
492 PF11180 DUF2968: Protein of u 54.6 2.6E+02 0.0057 30.1 13.0 78 798-875 106-183 (192)
493 KOG2072 Translation initiation 54.6 6E+02 0.013 33.0 28.2 217 663-905 560-784 (988)
494 PF15397 DUF4618: Domain of un 54.6 3.5E+02 0.0076 30.3 26.2 224 655-892 1-232 (258)
495 PF14988 DUF4515: Domain of un 54.4 3E+02 0.0066 29.5 22.0 165 663-840 25-199 (206)
496 PF04420 CHD5: CHD5-like prote 54.3 36 0.00077 34.7 6.6 64 763-834 40-103 (161)
497 KOG2264 Exostosin EXT1L [Signa 54.3 89 0.0019 38.3 10.5 70 792-861 81-150 (907)
498 cd00179 SynN Syntaxin N-termin 54.2 2.1E+02 0.0047 27.7 15.6 113 768-883 4-125 (151)
499 PF10392 COG5: Golgi transport 54.2 2.3E+02 0.0049 27.9 13.4 84 801-884 30-124 (132)
500 KOG0972 Huntingtin interacting 54.1 3.4E+02 0.0074 31.2 14.3 126 744-878 194-326 (384)
No 1
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.65 E-value=1.4e-14 Score=180.15 Aligned_cols=271 Identities=11% Similarity=0.117 Sum_probs=243.0
Q ss_pred CCCCCCCChhhhhhhhcc--ccCCCC--cCCCchhhhhhhcccccccc--CcceeeccCCCCC---chHHHHHHHHHHHH
Q 002520 605 DGDRTFQDVEGIERSDRC--ETQTST--PEGSTVDASESRNIGVEVVK--QPFYFLVKVPRYD---DENLREQIKAAQSK 675 (913)
Q Consensus 605 ~~~RsFedeeefkkFLkk--eklDk~--~eesLKDaVEe~kE~Ld~LR--r~fYf~Vr~rRLd---DPeLKaKIdeLekE 675 (913)
-|.|+|.+++++..|+++ .+++.. +...+...+..+++.++.++ .+.| .+|+++. -|.|+.++..+..+
T Consensus 682 LC~R~f~~eee~~~f~~~L~~~~~~~p~~~~~~~~~~~~~~~~~e~l~~l~~~~--~~~~~l~~~eip~l~~~l~~le~~ 759 (1311)
T TIGR00606 682 VCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGR--QSIIDLKEKEIPELRNKLQKVNRD 759 (1311)
T ss_pred CCCCCCCChhHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHhhhhH--HHHHHHHHhhchhHHHHHHHHHHH
Confidence 499999999776799988 777776 66899999999999999998 8888 8888873 39999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHH
Q 002520 676 VDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKNAISVDDIDGSIRNMEHRI 755 (913)
Q Consensus 676 IEeL~kqRdEInaELqeLReERdELeSeLKkLVeEIkrLReEInEKrKEIesLQSeLsKLrS~KSVEELQeEIkeLE~QI 755 (913)
+..+..++..+...+..++.+++.+.+ |...+..+.++..++.++.++|+.|..++.......|+++|+.+|..++.++
T Consensus 760 l~~~~~~le~~~~~l~~~~~~~~~~es-L~~~v~~i~r~~~ei~~l~~qie~l~~~l~~~~~~~s~~ele~ei~~~~~el 838 (1311)
T TIGR00606 760 IQRLKNDIEEQETLLGTIMPEEESAKV-CLTDVTIMERFQMELKDVERKIAQQAAKLQGSDLDRTVQQVNQEKQEKQHEL 838 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999 9999999999999999999999999998876665679999999999999999
Q ss_pred hhcC--C-CcHHHHH-HHHHHHHHHHHHHHhhhcccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 756 AHET--L-PLKEEKQ-IIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKFLRKEADSLRENVIKAEAATQAVK 831 (913)
Q Consensus 756 QheS--L-sLqEEKQ-lIrEISQLEkeRKdV~snIs~kakIEqSLeEKenIqEQIKELKKEIDELReKIkkLekELEeLk 831 (913)
...+ + .++.++. +.++|++|+..+..+...-. ++..++.++..++.+|.++..++.+++..+..++.++..+.
T Consensus 839 ~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~kl---kl~~~l~~r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~ 915 (1311)
T TIGR00606 839 DTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKL---QIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLE 915 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 9987 5 7888888 99999999666655443333 56668889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 832 KLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKD 881 (913)
Q Consensus 832 kKIeEAqaELdELqeElrAaeEeRQEAyekIkELRkQ~DeLNsEFyq~Rr 881 (913)
+++..+..++..++.+.+....+.+..+..+....+++..++.....|-.
T Consensus 916 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~y~~ 965 (1311)
T TIGR00606 916 TFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQ 965 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998887665543
No 2
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=99.53 E-value=5e-11 Score=128.11 Aligned_cols=212 Identities=18% Similarity=0.322 Sum_probs=153.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------
Q 002520 663 ENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQS------------ 730 (913)
Q Consensus 663 PeLKaKIdeLekEIEeL~kqRdEInaELqeLReERdELeSeLKkLVeEIkrLReEInEKrKEIesLQS------------ 730 (913)
..+..++..+...+..++..|++++..+.+++++|++++.+.+.+++.+..++...+.+..++..++.
T Consensus 9 ~E~e~K~~~lk~~~~e~~ekR~El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL 88 (294)
T COG1340 9 DELELKRKQLKEEIEELKEKRDELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQEL 88 (294)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666777777777777788888888888888888887777777665555555444444443322
Q ss_pred ---------HHHhc-cCCCCHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHhHH
Q 002520 731 ---------RINMM-KNAISVDDIDGSIRNMEHRIAHETLPLKEEKQIIREIKQLKQRREQISSSIGEHDEVQLAFDQKD 800 (913)
Q Consensus 731 ---------eLsKL-rS~KSVEELQeEIkeLE~QIQheSLsLqEEKQlIrEISQLEkeRKdV~snIs~kakIEqSLeEKe 800 (913)
..+.. .+.+++..|...|++|++.++|..|++.+|++++..|+.|++.+..+.. .+
T Consensus 89 ~~~~~~l~e~~~~~~~~~~~~~~ler~i~~Le~~~~T~~L~~e~E~~lvq~I~~L~k~le~~~k----------~~---- 154 (294)
T COG1340 89 RKEYRELKEKRNEFNLGGRSIKSLEREIERLEKKQQTSVLTPEEERELVQKIKELRKELEDAKK----------AL---- 154 (294)
T ss_pred HHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHH----------HH----
Confidence 12211 2358999999999999999999999999999999999999999876321 12
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 801 QIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYK 880 (913)
Q Consensus 801 nIqEQIKELKKEIDELReKIkkLekELEeLkkKIeEAqaELdELqeElrAaeEeRQEAyekIkELRkQ~DeLNsEFyq~R 880 (913)
.....++++.+++++++.+...++.++..|..+.++...++..+..+.+.+..+.+..+..+.++....+++|.+|.+.+
T Consensus 155 e~~~~~~el~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~ 234 (294)
T COG1340 155 EENEKLKELKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQ 234 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 23355666777777777777777777777777777777777777777777777777777777777777777777777666
Q ss_pred HHHHHHHH
Q 002520 881 DDTKQAND 888 (913)
Q Consensus 881 r~l~kARd 888 (913)
..++....
T Consensus 235 ~elre~~k 242 (294)
T COG1340 235 NELRELEK 242 (294)
T ss_pred HHHHHHHH
Confidence 66555443
No 3
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=99.18 E-value=3.8e-08 Score=106.32 Aligned_cols=201 Identities=17% Similarity=0.277 Sum_probs=118.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------cC-----CCCHHHHH
Q 002520 678 EKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMM-------KN-----AISVDDID 745 (913)
Q Consensus 678 eL~kqRdEInaELqeLReERdELeSeLKkLVeEIkrLReEInEKrKEIesLQSeLsKL-------rS-----~KSVEELQ 745 (913)
.+..++..+...+..+..+|++++.+++.++++...++..+.+++.+++.++++...+ +. +..+.+|-
T Consensus 10 E~e~K~~~lk~~~~e~~ekR~El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~ 89 (294)
T COG1340 10 ELELKRKQLKEEIEELKEKRDELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQELR 89 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555566666677777777777777777777777777777776666554332 21 11222222
Q ss_pred HHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHhHHHHHHHHHHHHHH------HHHHHHH
Q 002520 746 GSIRNMEHRIAHETLPLKEEKQIIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKFLRKE------ADSLREN 819 (913)
Q Consensus 746 eEIkeLE~QIQheSLsLqEEKQlIrEISQLEkeRKdV~snIs~kakIEqSLeEKenIqEQIKELKKE------IDELReK 819 (913)
..+..+-......++..-.=+.+.++|.+|+............. ..+-.+|..++++ +.....+
T Consensus 90 ~~~~~l~e~~~~~~~~~~~~~~ler~i~~Le~~~~T~~L~~e~E----------~~lvq~I~~L~k~le~~~k~~e~~~~ 159 (294)
T COG1340 90 KEYRELKEKRNEFNLGGRSIKSLEREIERLEKKQQTSVLTPEEE----------RELVQKIKELRKELEDAKKALEENEK 159 (294)
T ss_pred HHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHHHHhcCCChHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222222111111111225556666665554433333211 1222333333333 3334455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 820 VIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKDDTKQAND 888 (913)
Q Consensus 820 IkkLekELEeLkkKIeEAqaELdELqeElrAaeEeRQEAyekIkELRkQ~DeLNsEFyq~Rr~l~kARd 888 (913)
+..+.+++..+..+..+++.++.++.++.+..+.++.+.|..+.++|+..+.+|..|.+++..+...++
T Consensus 160 ~~el~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~~e 228 (294)
T COG1340 160 LKELKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHE 228 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 666667777777888888888888888888888888888999999999999999988888776655443
No 4
>PHA02562 46 endonuclease subunit; Provisional
Probab=98.64 E-value=3.5e-05 Score=88.04 Aligned_cols=101 Identities=13% Similarity=0.207 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHhhhcccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 768 IIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQ 847 (913)
Q Consensus 768 lIrEISQLEkeRKdV~snIs~kakIEqSLeEKenIqEQIKELKKEIDELReKIkkLekELEeLkkKIeEAqaELdELqeE 847 (913)
+..+|..|+.+++.+.. .+.+.+....+++.+...+.+++..+...+..+..+..++..++.++.++..+
T Consensus 304 l~d~i~~l~~~l~~l~~----------~i~~~~~~~~~~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~ 373 (562)
T PHA02562 304 IKDKLKELQHSLEKLDT----------AIDELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAE 373 (562)
T ss_pred HHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44455555555544333 33333333334444444444455555554444555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 848 FKAADEIRQEAYKHWQSLKKQAYDKNQHFWK 878 (913)
Q Consensus 848 lrAaeEeRQEAyekIkELRkQ~DeLNsEFyq 878 (913)
......++.+...+|.++..+...+..+...
T Consensus 374 ~~~~~~~l~~l~~~l~~~~~~~~~~~ke~~~ 404 (562)
T PHA02562 374 FVDNAEELAKLQDELDKIVKTKSELVKEKYH 404 (562)
T ss_pred hhchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555666666655555555443
No 5
>PRK02224 chromosome segregation protein; Provisional
Probab=98.63 E-value=1.4e-05 Score=96.45 Aligned_cols=43 Identities=7% Similarity=-0.056 Sum_probs=26.4
Q ss_pred CCCCCCCChhhhhhhhcc--ccCCCC--cCCCchhhhhhhcccccccc
Q 002520 605 DGDRTFQDVEGIERSDRC--ETQTST--PEGSTVDASESRNIGVEVVK 648 (913)
Q Consensus 605 ~~~RsFedeeefkkFLkk--eklDk~--~eesLKDaVEe~kE~Ld~LR 648 (913)
-|.|+|... ....|+.+ ..++.. ....+...++.++..++.++
T Consensus 456 ~C~r~~~~~-~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~e~l~ 502 (880)
T PRK02224 456 ECGQPVEGS-PHVETIEEDRERVEELEAELEDLEEEVEEVEERLERAE 502 (880)
T ss_pred CCCCcCCCc-chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 388999888 33456655 444443 34666666777766666543
No 6
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=98.58 E-value=4.6e-06 Score=103.44 Aligned_cols=269 Identities=17% Similarity=0.206 Sum_probs=183.2
Q ss_pred CCCCCCCChhhhhhhhcc--ccCCCCcCCCchhhhhhhccccc--cc-cCcceeeccCCCC-C--chHHHHHHHHHHHHH
Q 002520 605 DGDRTFQDVEGIERSDRC--ETQTSTPEGSTVDASESRNIGVE--VV-KQPFYFLVKVPRY-D--DENLREQIKAAQSKV 676 (913)
Q Consensus 605 ~~~RsFedeeefkkFLkk--eklDk~~eesLKDaVEe~kE~Ld--~L-Rr~fYf~Vr~rRL-d--DPeLKaKIdeLekEI 676 (913)
-|.|+|.++++ ..|.++ ..+++++.........--+.+.. .+ ...-. +....++ + -|.++.++.....++
T Consensus 679 lC~r~f~~eee-~ef~~~l~~~i~s~p~~~~~~~~~l~k~~k~~e~l~~~~~~-~~~~~~l~~~~i~e~~~~l~~~~~el 756 (1294)
T KOG0962|consen 679 LCQRSFTTEEE-VEFIKKLESKIDSAPDKLEEAEVELSKEEKIFEILLKLKPT-FGSIIKLIDKEIPELEKELQEVYEEL 756 (1294)
T ss_pred ccCCccchHHH-HHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHhhhhH-HHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 49999999955 788888 88888887665544443333332 10 11111 0111222 1 155666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHH
Q 002520 677 DEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINM-MKNAISVDDIDGSIRNMEHRI 755 (913)
Q Consensus 677 EeL~kqRdEInaELqeLReERdELeSeLKkLVeEIkrLReEInEKrKEIesLQSeLsK-LrS~KSVEELQeEIkeLE~QI 755 (913)
..+..+.+.....+..+...+..+.. +--.+..+.++..++....++|..+.+.+.. .....|++||+.+...+....
T Consensus 757 ~~~~~~~e~~~~~l~~~~~~~~~~~~-l~~~~~~~e~~~~d~~~~~k~ie~~~s~l~~~~d~i~t~~E~~~Ek~~~~~~~ 835 (1294)
T KOG0962|consen 757 GDLSEEEEDDEKLLDTIDAAEESAET-LQTDVTVLERFLKDLKLREKEIEELVSELDSSVDGIRTVDELRKEKSKKQESL 835 (1294)
T ss_pred HhhhhhhhHHHHHhcccchhHHhHHH-HhhhhHHHHHHHHHHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHH
Confidence 66666666666666666666665555 5555566777777788888888888887754 334799999999999999999
Q ss_pred hhcC--C-CcHHHHH-HHHHHHHHHHHHHHhhhcccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 756 AHET--L-PLKEEKQ-IIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKFLRKEADSLRENVIKAEAATQAVK 831 (913)
Q Consensus 756 QheS--L-sLqEEKQ-lIrEISQLEkeRKdV~snIs~kakIEqSLeEKenIqEQIKELKKEIDELReKIkkLekELEeLk 831 (913)
...+ + .+..++. ..++|+.|...+..+..... ++.+++.+..++.+++..+.+++..+..+++.+.+.+--+.
T Consensus 836 ~~~rke~E~~~k~~~~~~~~i~~l~~~~~e~k~~~~---~~~~~l~~~~qle~~~~~l~e~~~~~~s~~~e~~~~~~~~~ 912 (1294)
T KOG0962|consen 836 DKLRKEIECLQKEVIEQEREISRLINLRNELKEEKQ---KIERSLARLQQLEEDIEELSEEITRLDSKVKELLERIQPLK 912 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHhhhcchh
Confidence 9998 4 7788877 88899999888887766655 88899999999999999999999888888888888777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Q 002520 832 KLHREESEKLKRLLGQFKAADEIRQEAYKHW---QSLKKQAYDKNQHFWKY 879 (913)
Q Consensus 832 kKIeEAqaELdELqeElrAaeEeRQEAyekI---kELRkQ~DeLNsEFyq~ 879 (913)
....++.....++..+........++....| ..+.++....+..|.++
T Consensus 913 ~~l~e~~s~~e~~k~~~~~~~~~aqk~~~~ine~~s~l~~~~~~~~~~~~~ 963 (1294)
T KOG0962|consen 913 VELEEAQSEKEELKNERNTSEKLAQKKRNDINEKVSLLHQIYKLNECFEQY 963 (1294)
T ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 7777777777777766544333333333333 33444444444444433
No 7
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.49 E-value=0.0001 Score=90.04 Aligned_cols=7 Identities=29% Similarity=0.899 Sum_probs=2.8
Q ss_pred CCCCccc
Q 002520 446 GNEALVP 452 (913)
Q Consensus 446 ~~~~~~~ 452 (913)
|.-.++|
T Consensus 573 gr~tflp 579 (1164)
T TIGR02169 573 GRATFLP 579 (1164)
T ss_pred CCeeecc
Confidence 3333444
No 8
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.45 E-value=0.00018 Score=90.39 Aligned_cols=78 Identities=17% Similarity=0.226 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 804 EKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKD 881 (913)
Q Consensus 804 EQIKELKKEIDELReKIkkLekELEeLkkKIeEAqaELdELqeElrAaeEeRQEAyekIkELRkQ~DeLNsEFyq~Rr 881 (913)
.+|..+..++..+..++..+...+..+..++..+..++..++.+...+...+.........+..+++.+.....+.+.
T Consensus 828 ~ei~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~ 905 (1163)
T COG1196 828 QEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKE 905 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333333333333333333333333333333333333333333333
No 9
>PRK11637 AmiB activator; Provisional
Probab=98.31 E-value=0.0014 Score=74.16 Aligned_cols=69 Identities=22% Similarity=0.338 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 664 NLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRI 732 (913)
Q Consensus 664 eLKaKIdeLekEIEeL~kqRdEInaELqeLReERdELeSeLKkLVeEIkrLReEInEKrKEIesLQSeL 732 (913)
.++.+++.++.+++.+.+++..+...+..+..+...+..+|..+..++..+..+|.....+|..++.++
T Consensus 44 ~~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI 112 (428)
T PRK11637 44 DNRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASI 112 (428)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555555555555555555555555555444444444444444444444433
No 10
>PHA02562 46 endonuclease subunit; Provisional
Probab=98.31 E-value=0.00082 Score=77.04 Aligned_cols=21 Identities=10% Similarity=0.401 Sum_probs=10.6
Q ss_pred cHHHHH-HHHHHHHHHHHHHHh
Q 002520 762 LKEEKQ-IIREIKQLKQRREQI 782 (913)
Q Consensus 762 LqEEKQ-lIrEISQLEkeRKdV 782 (913)
|.+.+. +..+++.|+..+.++
T Consensus 304 l~d~i~~l~~~l~~l~~~i~~~ 325 (562)
T PHA02562 304 IKDKLKELQHSLEKLDTAIDEL 325 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 344444 555555555555543
No 11
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.30 E-value=0.00027 Score=74.29 Aligned_cols=219 Identities=16% Similarity=0.250 Sum_probs=129.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHH
Q 002520 668 QIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKNAISVDDIDGS 747 (913)
Q Consensus 668 KIdeLekEIEeL~kqRdEInaELqeLReERdELeSeLKkLVeEIkrLReEInEKrKEIesLQSeLsKLrS~KSVEELQeE 747 (913)
+|..++.+++.+..++..+..++......+..+..++..+...+..+...+......+......|.... +..++....
T Consensus 2 K~~~l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e--~~~de~er~ 79 (237)
T PF00261_consen 2 KIQQLKDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAE--KRADESERA 79 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHH--HHHHHHCHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence 555666666666666666666666655555555555555554444444444433333333333333222 334444444
Q ss_pred HHHHHHHHhhcC--C-CcHHHHH-HHHHHHHHHHHHHHhhhccc-chhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 748 IRNMEHRIAHET--L-PLKEEKQ-IIREIKQLKQRREQISSSIG-EHDEVQLAFDQKDQIEEKMKFLRKEADSLRENVIK 822 (913)
Q Consensus 748 IkeLE~QIQheS--L-sLqEEKQ-lIrEISQLEkeRKdV~snIs-~kakIEqSLeEKenIqEQIKELKKEIDELReKIkk 822 (913)
.+.|+.+....- | .|...-+ +.............+...+. ....+...-.+-..+..+|..+..++..+...++.
T Consensus 80 ~k~lE~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~ 159 (237)
T PF00261_consen 80 RKVLENREQSDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKS 159 (237)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHH
Confidence 444444333221 2 2222211 22222222222222222221 11122333344456677888888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 823 AEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKDDTKQAND 888 (913)
Q Consensus 823 LekELEeLkkKIeEAqaELdELqeElrAaeEeRQEAyekIkELRkQ~DeLNsEFyq~Rr~l~kARd 888 (913)
+...-.....+.+....+|..|..++..+..+...+-..+..|-.+++.+...++.++.....++.
T Consensus 160 lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~ 225 (237)
T PF00261_consen 160 LEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQE 225 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888899999999999999999999999999999999999999888877766543
No 12
>PRK02224 chromosome segregation protein; Provisional
Probab=98.30 E-value=0.00049 Score=83.30 Aligned_cols=39 Identities=13% Similarity=0.271 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002520 851 ADEIRQEAYKHWQSLKKQAYDKNQHFWKYKDDTKQANDL 889 (913)
Q Consensus 851 aeEeRQEAyekIkELRkQ~DeLNsEFyq~Rr~l~kARdL 889 (913)
+...++..-..+..++.....+....-.++..+..++++
T Consensus 410 ~e~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~ 448 (880)
T PRK02224 410 AEDFLEELREERDELREREAELEATLRTARERVEEAEAL 448 (880)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444445555555555555555566666666643
No 13
>PRK11637 AmiB activator; Provisional
Probab=98.30 E-value=0.00039 Score=78.47 Aligned_cols=65 Identities=11% Similarity=0.240 Sum_probs=28.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 663 ENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDS 727 (913)
Q Consensus 663 PeLKaKIdeLekEIEeL~kqRdEInaELqeLReERdELeSeLKkLVeEIkrLReEInEKrKEIes 727 (913)
..++.+|+++++++..+..++..+..++..+..+...+..+|+.+..++..+..+|..+..+|..
T Consensus 50 ~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~ 114 (428)
T PRK11637 50 KSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAK 114 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555554444444444444444444444444444444444444444444444333333333
No 14
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.29 E-value=0.00084 Score=78.50 Aligned_cols=94 Identities=15% Similarity=0.292 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHH
Q 002520 664 NLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKNAISVDD 743 (913)
Q Consensus 664 eLKaKIdeLekEIEeL~kqRdEInaELqeLReERdELeSeLKkLVeEIkrLReEInEKrKEIesLQSeLsKLrS~KSVEE 743 (913)
-|+.+++...++...|.+....+..++..++.+...+..+|.....+...+.....++....+.+..+...+. ...++
T Consensus 140 ~lQ~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~--~q~~e 217 (546)
T PF07888_consen 140 LLQNQLEECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLK--EQLAE 217 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH
Confidence 4777888888888888888888888888888888888888887777777777776666666665555554443 33455
Q ss_pred HHHHHHHHHHHHhhcC
Q 002520 744 IDGSIRNMEHRIAHET 759 (913)
Q Consensus 744 LQeEIkeLE~QIQheS 759 (913)
...+|..|+..|.+.+
T Consensus 218 ~~~ri~~LEedi~~l~ 233 (546)
T PF07888_consen 218 ARQRIRELEEDIKTLT 233 (546)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6666666666666554
No 15
>PRK03918 chromosome segregation protein; Provisional
Probab=98.28 E-value=0.00087 Score=80.88 Aligned_cols=30 Identities=10% Similarity=0.353 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 664 NLREQIKAAQSKVDEKTRSRDAIRDDIQTI 693 (913)
Q Consensus 664 eLKaKIdeLekEIEeL~kqRdEInaELqeL 693 (913)
.+..+|..++.++..++.++..+..++..+
T Consensus 456 ~~~~ei~~l~~~~~~l~~~~~~l~~~~~~~ 485 (880)
T PRK03918 456 EYTAELKRIEKELKEIEEKERKLRKELREL 485 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555444433
No 16
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=98.18 E-value=0.0024 Score=75.81 Aligned_cols=90 Identities=19% Similarity=0.190 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 802 IEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKA-------ADEIRQEAYKHWQSLKKQAYDKNQ 874 (913)
Q Consensus 802 IqEQIKELKKEIDELReKIkkLekELEeLkkKIeEAqaELdELqeElrA-------aeEeRQEAyekIkELRkQ~DeLNs 874 (913)
.-.+|-++-+.+...+..|.++-.+.+.|+++++.+..+|..-..-.+. ...-.+++|..|..+...+..+-.
T Consensus 489 Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~gkL~RtF~v~dElifrdAKkDe~~rkaYK~La~lh~~c~~Li~ 568 (594)
T PF05667_consen 489 YTRRILEIVKNIRKQKEEIEKILSDTRELQKEINSLTGKLDRTFTVTDELIFRDAKKDEAARKAYKLLASLHENCSQLIE 568 (594)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3346666666667777777777777777777777777666643322222 223445678888888888888888
Q ss_pred HHHHHHHHHHHHHHhhh
Q 002520 875 HFWKYKDDTKQANDLAS 891 (913)
Q Consensus 875 EFyq~Rr~l~kARdLAa 891 (913)
..-..=+..+..|||-.
T Consensus 569 ~v~~tG~~~rEirdLe~ 585 (594)
T PF05667_consen 569 TVEETGTISREIRDLEE 585 (594)
T ss_pred HHHHhhHHHHHHHHHHH
Confidence 88888888888888764
No 17
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=98.09 E-value=0.0026 Score=82.98 Aligned_cols=19 Identities=42% Similarity=0.557 Sum_probs=15.8
Q ss_pred CchhHHHHhhhhhhhccCC
Q 002520 504 DDLVCKEVLENARIQFTGG 522 (913)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~ 522 (913)
.-|-|.-|||-.||.-.|=
T Consensus 683 ~QLrcngVLEgIRicR~Gf 701 (1930)
T KOG0161|consen 683 NQLRCNGVLEGIRICRQGF 701 (1930)
T ss_pred HHhhccCcHHHHHHHHhhC
Confidence 4688999999999987764
No 18
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=98.09 E-value=0.00083 Score=71.73 Aligned_cols=172 Identities=16% Similarity=0.255 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhhcCCCcH
Q 002520 684 DAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKNAISVDDIDGSIRNMEHRIAHETLPLK 763 (913)
Q Consensus 684 dEInaELqeLReERdELeSeLKkLVeEIkrLReEInEKrKEIesLQSeLsKLrS~KSVEELQeEIkeLE~QIQheSLsLq 763 (913)
..++.++..++.+++.....|+++.+++.++++.+..++.+++.|..+...+. ..+.++.+++...++++ ..++-.
T Consensus 13 q~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e--~ei~~~r~r~~~~e~kl--~~v~~~ 88 (239)
T COG1579 13 QKLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLE--SEIQEIRERIKRAEEKL--SAVKDE 88 (239)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH--hccccH
Confidence 35555556666666666666777777777777777777777776665554333 46667777777777776 223322
Q ss_pred HHHH-HHHHHHHHHHHHHHhhhcccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 764 EEKQ-IIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLK 842 (913)
Q Consensus 764 EEKQ-lIrEISQLEkeRKdV~snIs~kakIEqSLeEKenIqEQIKELKKEIDELReKIkkLekELEeLkkKIeEAqaELd 842 (913)
.|-. +..+|..++..+..+...+ ..+.+.+..+.+++..++.+ +..+.+.+.++++.+
T Consensus 89 ~e~~aL~~E~~~ak~r~~~le~el-------------~~l~~~~~~l~~~i~~l~~~-------~~~~e~~~~e~~~~~- 147 (239)
T COG1579 89 RELRALNIEIQIAKERINSLEDEL-------------AELMEEIEKLEKEIEDLKER-------LERLEKNLAEAEARL- 147 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH-
Confidence 2222 5555555555544321111 12222333333333333333 333333333333222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 843 RLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKDD 882 (913)
Q Consensus 843 ELqeElrAaeEeRQEAyekIkELRkQ~DeLNsEFyq~Rr~ 882 (913)
..+...+.+++...+.+...|...++.---.||...+.
T Consensus 148 --e~e~~~i~e~~~~~~~~~~~L~~~l~~ell~~yeri~~ 185 (239)
T COG1579 148 --EEEVAEIREEGQELSSKREELKEKLDPELLSEYERIRK 185 (239)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHh
Confidence 24555555566666777777777777665556554443
No 19
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.08 E-value=0.0022 Score=79.45 Aligned_cols=205 Identities=16% Similarity=0.229 Sum_probs=118.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-----CCCHHHHHHHHHHHHHHHhhcCCCcHHHH
Q 002520 692 TIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKN-----AISVDDIDGSIRNMEHRIAHETLPLKEEK 766 (913)
Q Consensus 692 eLReERdELeSeLKkLVeEIkrLReEInEKrKEIesLQSeLsKLrS-----~KSVEELQeEIkeLE~QIQheSLsLqEEK 766 (913)
.++.++..+..+-.+..+.++++...+..+.++|+..+.+...+.+ ...+.+.+.+|..|+.........|.+.+
T Consensus 388 ~~k~~~~~~e~~~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~ 467 (1293)
T KOG0996|consen 388 SLKKKFQDLEREDVKREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELDEIL 467 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555544455556666666666666666655554433331 24566666677777766666553343333
Q ss_pred H--------HHHHHHHHHHHHHHhhhcccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 767 Q--------IIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREES 838 (913)
Q Consensus 767 Q--------lIrEISQLEkeRKdV~snIs~kakIEqSLeEKenIqEQIKELKKEIDELReKIkkLekELEeLkkKIeEAq 838 (913)
. +..+|..+++.+-.....+. ..-.+.+-.+.+++.+...-+....+...+...+..+...+.+.+
T Consensus 468 ~~l~~~t~~~~~e~~~~ekel~~~~~~~n------~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~ 541 (1293)
T KOG0996|consen 468 DSLKQETEGIREEIEKLEKELMPLLKQVN------EARSELDVAESELDILLSRHETGLKKVEELKGKLLASSESLKEKK 541 (1293)
T ss_pred HHHhhhhhhhHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 33333333333322211111 111222223345555555555566666666666666666666677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhc-CCHHHHHHHH
Q 002520 839 EKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKDDTKQAND-LASK-GDREALQHLC 902 (913)
Q Consensus 839 aELdELqeElrAaeEeRQEAyekIkELRkQ~DeLNsEFyq~Rr~l~kARd-LAa~-~dv~eLqelc 902 (913)
..+..+...+.....++.++-..+..++.....++...+..|..+..++. |++. ..=+.|++|.
T Consensus 542 ~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~ks~~~~~~s~~kVl~al~ 607 (1293)
T KOG0996|consen 542 TELDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEAKSSLSSSRSRNKVLDALM 607 (1293)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 77777777777777777778888888888888888888888888888777 5544 2233444444
No 20
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.04 E-value=0.0023 Score=79.41 Aligned_cols=69 Identities=13% Similarity=0.275 Sum_probs=44.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 663 ENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSR 731 (913)
Q Consensus 663 PeLKaKIdeLekEIEeL~kqRdEInaELqeLReERdELeSeLKkLVeEIkrLReEInEKrKEIesLQSe 731 (913)
..++.++.........+..++..+...+.++|....++..+|..+.+..+++-..+..+..+|..+...
T Consensus 781 ~~le~~l~~~~~~~~~~~~~~~~~ee~~~~lr~~~~~l~~~l~~~~~~~k~~~~~~~~l~~~i~~~E~~ 849 (1293)
T KOG0996|consen 781 EKLERALSKMSDKARQHQEQLHELEERVRKLRERIPELENRLEKLTASVKRLAELIEYLESQIAELEAA 849 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666666666666677777777777777777666666666666666666555444
No 21
>PRK01156 chromosome segregation protein; Provisional
Probab=98.02 E-value=0.0098 Score=72.71 Aligned_cols=22 Identities=18% Similarity=0.199 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 002520 667 EQIKAAQSKVDEKTRSRDAIRD 688 (913)
Q Consensus 667 aKIdeLekEIEeL~kqRdEIna 688 (913)
.+|..+..++..+..++..+..
T Consensus 476 ~~i~~l~~~i~~l~~~~~~l~~ 497 (895)
T PRK01156 476 EKKSRLEEKIREIEIEVKDIDE 497 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444333333333
No 22
>PRK03918 chromosome segregation protein; Provisional
Probab=98.01 E-value=0.0059 Score=73.90 Aligned_cols=35 Identities=20% Similarity=0.250 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 690 IQTIRASYKEYAEKLEAAISDERSARESLKSKRQE 724 (913)
Q Consensus 690 LqeLReERdELeSeLKkLVeEIkrLReEInEKrKE 724 (913)
+..++.+...+..++..+..++..+...+..+.++
T Consensus 195 l~~l~~~~~~l~~ei~~l~~e~~~l~~~~~~~~~~ 229 (880)
T PRK03918 195 IKEKEKELEEVLREINEISSELPELREELEKLEKE 229 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444444444444333333
No 23
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=97.98 E-value=0.028 Score=63.71 Aligned_cols=226 Identities=16% Similarity=0.172 Sum_probs=114.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHH
Q 002520 664 NLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKNAISVDD 743 (913)
Q Consensus 664 eLKaKIdeLekEIEeL~kqRdEInaELqeLReERdELeSeLKkLVeEIkrLReEInEKrKEIesLQSeLsKLrS~KSVEE 743 (913)
.++.++..++.+.....-+|+..+.++.+.+.++..++.++..+...+.....++....++...|+..|..+
T Consensus 85 ~~rtel~~a~~~k~~~e~er~~~~~El~~~r~e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l-------- 156 (499)
T COG4372 85 ALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAKAQQELARLTKQAQDLQTRLKTL-------- 156 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
Confidence 344455555555555556666666666666666666666666665555555555555555555555554422
Q ss_pred HHHHHHHHHHHHhhcCCCcHHH-HHHHHHHHHHHHHHHHhhhcccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 744 IDGSIRNMEHRIAHETLPLKEE-KQIIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKFLRKEADSLRENVIK 822 (913)
Q Consensus 744 LQeEIkeLE~QIQheSLsLqEE-KQlIrEISQLEkeRKdV~snIs~kakIEqSLeEKenIqEQIKELKKEIDELReKIkk 822 (913)
-.+-+.|+.+.+. |..+ |++.--.++|+..+.++..-.. .+++.-....+-.+.+....+++.......+.
T Consensus 157 -~~qr~ql~aq~qs----l~a~~k~LQ~s~~Qlk~~~~~L~~r~~---~ieQ~~~~la~r~~a~q~r~~ela~r~aa~Qq 228 (499)
T COG4372 157 -AEQRRQLEAQAQS----LQASQKQLQASATQLKSQVLDLKLRSA---QIEQEAQNLATRANAAQARTEELARRAAAAQQ 228 (499)
T ss_pred -HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1223333333332 3333 3355556666666666544433 23222222223334455555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCHHHHHHHH
Q 002520 823 AEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKDDTKQANDLASKGDREALQHLC 902 (913)
Q Consensus 823 LekELEeLkkKIeEAqaELdELqeElrAaeEeRQEAyekIkELRkQ~DeLNsEFyq~Rr~l~kARdLAa~~dv~eLqelc 902 (913)
...++.-..++++.....+..-.+...+.+.+.+..-....-|-.+...+..+|-.|++....+-.+.- |.+-+--.+-
T Consensus 229 ~~q~i~qrd~~i~q~~q~iaar~e~I~~re~~lq~lEt~q~~leqeva~le~yyQ~y~~lr~q~~a~~r-GQvla~a~~r 307 (499)
T COG4372 229 TAQAIQQRDAQISQKAQQIAARAEQIRERERQLQRLETAQARLEQEVAQLEAYYQAYVRLRQQAAATQR-GQVLAGAAQR 307 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHH
Confidence 555555555555555555554444444555555554444444555555566666666665544433322 5554443333
Q ss_pred HHHH
Q 002520 903 VNQV 906 (913)
Q Consensus 903 ~~QV 906 (913)
++|+
T Consensus 308 v~q~ 311 (499)
T COG4372 308 VAQA 311 (499)
T ss_pred HHHH
Confidence 4433
No 24
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.98 E-value=0.0021 Score=81.97 Aligned_cols=90 Identities=9% Similarity=0.052 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 809 LRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKDDTKQAND 888 (913)
Q Consensus 809 LKKEIDELReKIkkLekELEeLkkKIeEAqaELdELqeElrAaeEeRQEAyekIkELRkQ~DeLNsEFyq~Rr~l~kARd 888 (913)
+..+++++...+..+..++..+..++..+...+..++.++..+....+. ....+..+++.+...+.+........++
T Consensus 886 le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 962 (1311)
T TIGR00606 886 FEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKET---SNKKAQDKVNDIKEKVKNIHGYMKDIEN 962 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555555555555555544444333 3456666677777788888888888888
Q ss_pred hhhcCCHHHHHHH
Q 002520 889 LASKGDREALQHL 901 (913)
Q Consensus 889 LAa~~dv~eLqel 901 (913)
+...|-...|+.+
T Consensus 963 y~~~~~~~qL~~~ 975 (1311)
T TIGR00606 963 KIQDGKDDYLKQK 975 (1311)
T ss_pred HHHcCCHHHHHHH
Confidence 8888766656543
No 25
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=97.95 E-value=0.0045 Score=80.94 Aligned_cols=59 Identities=19% Similarity=0.315 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 800 DQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEA 858 (913)
Q Consensus 800 enIqEQIKELKKEIDELReKIkkLekELEeLkkKIeEAqaELdELqeElrAaeEeRQEA 858 (913)
..+..+++....++..+..+++.....+..+.+.+.++...+.++.+++.+....+.++
T Consensus 1065 ~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ 1123 (1930)
T KOG0161|consen 1065 EELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASRAKA 1123 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444445545444444444444444444444444444444444444433
No 26
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=97.92 E-value=0.011 Score=73.20 Aligned_cols=75 Identities=21% Similarity=0.330 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 800 DQIEEKMKFLRKEADSLRENVIKAEAAT-QAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQ 874 (913)
Q Consensus 800 enIqEQIKELKKEIDELReKIkkLekEL-EeLkkKIeEAqaELdELqeElrAaeEeRQEAyekIkELRkQ~DeLNs 874 (913)
..++.+|..++...+.+++.|..++++. +.+.+++.+...+++.|..+...++........+++.+...+.....
T Consensus 361 ~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~e 436 (1074)
T KOG0250|consen 361 REIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEE 436 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 3455566666666666666666666655 55666666666666655555555555444444444444444433333
No 27
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.91 E-value=0.0052 Score=75.27 Aligned_cols=207 Identities=14% Similarity=0.248 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH----HHHHHHHHHHHHHHhcc---C--CCCHHHHHHH
Q 002520 680 TRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARES---LK----SKRQEIDSVQSRINMMK---N--AISVDDIDGS 747 (913)
Q Consensus 680 ~kqRdEInaELqeLReERdELeSeLKkLVeEIkrLReE---In----EKrKEIesLQSeLsKLr---S--~KSVEELQeE 747 (913)
..+++....++..+..+..+|...|+.++.+..++..+ +. .+.-++++|++++.... + ..+..++...
T Consensus 257 ~~~~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~kdlq~~i~~n~q~r~~~l~~l~~~~~k 336 (1200)
T KOG0964|consen 257 IDALDKVEDESEDLKCEIKELENKLTNLREEKEQLKARETKISKKKTKLELKIKDLQDQITGNEQQRNLALHVLQKVKDK 336 (1200)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhhhhhHHHHHHHHHHH
Confidence 34445555555555666666666665555543333332 11 11223444554442111 0 1233333334
Q ss_pred HHHHHHHHhhcC--C-CcH-HHHHHHHHHHHHHHHHHHhhhcccchhHH---------------------HHHHHhHHHH
Q 002520 748 IRNMEHRIAHET--L-PLK-EEKQIIREIKQLKQRREQISSSIGEHDEV---------------------QLAFDQKDQI 802 (913)
Q Consensus 748 IkeLE~QIQheS--L-sLq-EEKQlIrEISQLEkeRKdV~snIs~kakI---------------------EqSLeEKenI 802 (913)
|......+...- . +|+ +|++....|..|+..++++-++-+..... .....+...|
T Consensus 337 i~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l~~Kqgr~sqFssk~eRDkwir~ei~~l~~~i~~~ke~e~~l 416 (1200)
T KOG0964|consen 337 IEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQKQRDLLAKQGRYSQFSSKEERDKWIRSEIEKLKRGINDTKEQENIL 416 (1200)
T ss_pred HHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhccccccCcHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 444333333322 1 333 33346666666666555543322211111 1111222334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 803 EEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKDD 882 (913)
Q Consensus 803 qEQIKELKKEIDELReKIkkLekELEeLkkKIeEAqaELdELqeElrAaeEeRQEAyekIkELRkQ~DeLNsEFyq~Rr~ 882 (913)
+..|..++.++.+.-++++++...+.+...++.++.+++.+++++++++..+|+..+..=+.|+..+..+....-+..+.
T Consensus 417 q~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWREE~~l~~~i~~~~~dl~~~~~~ 496 (1200)
T KOG0964|consen 417 QKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKELWREEKKLRSLIANLEEDLSRAEKN 496 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445555555555555555555555555555555555555555555555555555555555555555555555554
Q ss_pred HHHH
Q 002520 883 TKQA 886 (913)
Q Consensus 883 l~kA 886 (913)
++++
T Consensus 497 L~~~ 500 (1200)
T KOG0964|consen 497 LRAT 500 (1200)
T ss_pred HHHh
Confidence 4443
No 28
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.90 E-value=0.019 Score=67.55 Aligned_cols=18 Identities=11% Similarity=0.174 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 002520 860 KHWQSLKKQAYDKNQHFW 877 (913)
Q Consensus 860 ekIkELRkQ~DeLNsEFy 877 (913)
+.+.+|..++..+...|-
T Consensus 371 ~~ie~L~~el~~~e~~lq 388 (546)
T PF07888_consen 371 DEIEKLSRELQMLEEHLQ 388 (546)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345555555555555443
No 29
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=97.87 E-value=0.031 Score=60.20 Aligned_cols=64 Identities=17% Similarity=0.455 Sum_probs=34.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 663 ENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEID 726 (913)
Q Consensus 663 PeLKaKIdeLekEIEeL~kqRdEInaELqeLReERdELeSeLKkLVeEIkrLReEInEKrKEIe 726 (913)
..+..+|..+...++.+...+..+...+..++....++..++.........+..++..++++++
T Consensus 50 ~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld 113 (312)
T PF00038_consen 50 EMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLD 113 (312)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 3455566666666666655555555555555555555555555555444444444444444443
No 30
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=97.86 E-value=0.004 Score=75.62 Aligned_cols=76 Identities=17% Similarity=0.180 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 002520 816 LRENVIKAEAATQAVKKLHREESEKLKRLLGQFK-AADEIRQEAYKHWQSLKKQAYDKNQHFWKYKDDTKQANDLASK 892 (913)
Q Consensus 816 LReKIkkLekELEeLkkKIeEAqaELdELqeElr-AaeEeRQEAyekIkELRkQ~DeLNsEFyq~Rr~l~kARdLAa~ 892 (913)
+.+++..|+.++..|. ..++.+++|.+...+.. .+.++++.+--++.++..+.+......|.+--.+.|.|+|+++
T Consensus 460 lEekVklLeetv~dlE-alee~~EQL~Esn~ele~DLreEld~~~g~~kel~~r~~aaqet~yDrdqTI~KfRelva~ 536 (1243)
T KOG0971|consen 460 LEEKVKLLEETVGDLE-ALEEMNEQLQESNRELELDLREELDMAKGARKELQKRVEAAQETVYDRDQTIKKFRELVAH 536 (1243)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 4555555555555543 33344455554444433 4566777777778899999999999999999999999999984
No 31
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=97.85 E-value=0.02 Score=68.23 Aligned_cols=47 Identities=17% Similarity=0.345 Sum_probs=28.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 663 ENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAIS 709 (913)
Q Consensus 663 PeLKaKIdeLekEIEeL~kqRdEInaELqeLReERdELeSeLKkLVe 709 (913)
..+..+++.+++++..+..+...+...+..++..++.+..++..+..
T Consensus 205 ~~~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~ 251 (650)
T TIGR03185 205 SSILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEK 251 (650)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666666666666666555555555554443
No 32
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.85 E-value=0.011 Score=72.69 Aligned_cols=60 Identities=8% Similarity=0.275 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 664 NLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQ 723 (913)
Q Consensus 664 eLKaKIdeLekEIEeL~kqRdEInaELqeLReERdELeSeLKkLVeEIkrLReEInEKrK 723 (913)
+|.+.++.++.+|+...++.+++...++.....+..+..+..++..++...+.+......
T Consensus 682 ~l~~~L~~~r~~i~~~~~~i~q~~~~~qk~e~~~~~~~~~~~~l~~e~~~~k~e~~~v~~ 741 (1200)
T KOG0964|consen 682 ELQESLDEVRNEIEDIDQKIDQLNNNMQKVENDRNAFKREHEKLKRELNTIKGEKSRVQE 741 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 344444444444444444444444444444444444444444444333333333333333
No 33
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=97.84 E-value=0.012 Score=71.98 Aligned_cols=250 Identities=11% Similarity=0.194 Sum_probs=137.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-----
Q 002520 663 ENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKN----- 737 (913)
Q Consensus 663 PeLKaKIdeLekEIEeL~kqRdEInaELqeLReERdELeSeLKkLVeEIkrLReEInEKrKEIesLQSeLsKLrS----- 737 (913)
..+|.+++.+.-++.....++..+.+++..+...-.++...|..+...+.+......-+..+++.|+..|.....
T Consensus 283 ~~mK~k~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk 362 (775)
T PF10174_consen 283 LAMKSKMDRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKK 362 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 457777888877777777777777777776666666666666666666666665555555555555555532210
Q ss_pred CCCHHHHHHHHHHHHHHHhhcC--CCcHHHHH--HHHHHHHHHHHHHHhhh-----------------cccchhHHHHHH
Q 002520 738 AISVDDIDGSIRNMEHRIAHET--LPLKEEKQ--IIREIKQLKQRREQISS-----------------SIGEHDEVQLAF 796 (913)
Q Consensus 738 ~KSVEELQeEIkeLE~QIQheS--LsLqEEKQ--lIrEISQLEkeRKdV~s-----------------nIs~kakIEqSL 796 (913)
..+++.++.+...+.-.|...+ +...+-|= +.+.|..|+..+++... .-.....+...+
T Consensus 363 ~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd~ql~~~k~Rl~~~~d~~~~~~~~~~lEea~ 442 (775)
T PF10174_consen 363 QAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLREKDRQLDEEKERLSSQADSSNEDEALETLEEAL 442 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHH
Confidence 1233444444443333333333 12222111 44444444433322111 011223555666
Q ss_pred HhHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 797 DQKDQIEEKMKFL--------RKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQ 868 (913)
Q Consensus 797 eEKenIqEQIKEL--------KKEIDELReKIkkLekELEeLkkKIeEAqaELdELqeElrAaeEeRQEAyekIkELRkQ 868 (913)
..++.+...|... ..+++.++..+..+...+..|++++.+....|..++.+...+.....+....|..+.-.
T Consensus 443 ~eker~~e~l~e~r~~~e~e~~Eele~~~~e~~~lk~~~~~LQ~eLsEk~~~l~~~kee~s~l~s~~~K~~s~i~~l~I~ 522 (775)
T PF10174_consen 443 REKERLQERLEEQRERAEKERQEELETYQKELKELKAKLESLQKELSEKELQLEDAKEEASKLASSQEKKDSEIERLEIE 522 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHhhccchhhhHHHHHHHH
Confidence 6666666665544 34455666666666666666666666666666666666666666666666677777666
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCC-HHHH----------HHHHHHHHHhhhhc
Q 002520 869 AYDKNQHFWKYKDDTKQANDLASKGD-REAL----------QHLCVNQVRSRTLL 912 (913)
Q Consensus 869 ~DeLNsEFyq~Rr~l~kARdLAa~~d-v~eL----------qelc~~QVEkfm~l 912 (913)
+...+..+-+..+.+.+++..+-..+ +..| -.-|.+||||.|.+
T Consensus 523 lEk~rek~~kl~~ql~k~~~~~e~~~r~~~Le~ev~~~~ee~~kaq~EVERLl~~ 577 (775)
T PF10174_consen 523 LEKKREKHEKLEKQLEKLRANAELRDRIQQLEQEVTRYREESEKAQAEVERLLDI 577 (775)
T ss_pred HHHhhhHHHHHHHHHHHHHhCHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666443322211 1111 23467888887753
No 34
>PRK01156 chromosome segregation protein; Provisional
Probab=97.82 E-value=0.0072 Score=73.83 Aligned_cols=35 Identities=9% Similarity=0.303 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 665 LREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKE 699 (913)
Q Consensus 665 LKaKIdeLekEIEeL~kqRdEInaELqeLReERdE 699 (913)
++.++..+.+++..+...+..+...+..++.+...
T Consensus 195 ~e~eL~~~~~~i~el~~~~~~l~~~i~~~~~el~~ 229 (895)
T PRK01156 195 SNLELENIKKQIADDEKSHSITLKEIERLSIEYNN 229 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444333333333333333
No 35
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.82 E-value=0.0049 Score=75.64 Aligned_cols=132 Identities=13% Similarity=0.208 Sum_probs=75.9
Q ss_pred CCHHHHHHHHHHHHHHHhhcC--C-CcHHHHH-HHHHHHHHHHHHHHhhhcccchhHHHHHHHhHHHHHHHHHHHHHHHH
Q 002520 739 ISVDDIDGSIRNMEHRIAHET--L-PLKEEKQ-IIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKFLRKEAD 814 (913)
Q Consensus 739 KSVEELQeEIkeLE~QIQheS--L-sLqEEKQ-lIrEISQLEkeRKdV~snIs~kakIEqSLeEKenIqEQIKELKKEID 814 (913)
+-+.++.++|+.+..+++..+ + +-..|.+ +.-|+.+|++.+.- .++++. .+..+|..++.++.
T Consensus 787 ~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~----------~k~~l~---~~~~~~~~l~~e~~ 853 (1174)
T KOG0933|consen 787 RRLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISS----------LKQQLE---QLEKQISSLKSELG 853 (1174)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHH---HHHHHHHHHHHHHH
Confidence 567777778877777777666 3 4444444 55566666665542 222222 34455666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 815 SLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKDDT 883 (913)
Q Consensus 815 ELReKIkkLekELEeLkkKIeEAqaELdELqeElrAaeEeRQEAyekIkELRkQ~DeLNsEFyq~Rr~l 883 (913)
.++.++......++.+..++....+.+..+-.+........+.-..+.....-.+..+..++-++.+.-
T Consensus 854 ~l~~kv~~~~~~~~~~~~el~~~k~k~~~~dt~i~~~~~~~e~~~~e~~~~~l~~kkle~e~~~~~~e~ 922 (1174)
T KOG0933|consen 854 NLEAKVDKVEKDVKKAQAELKDQKAKQRDIDTEISGLLTSQEKCLSEKSDGELERKKLEHEVTKLESEK 922 (1174)
T ss_pred HHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhHHHhhhhhHHHHHHHHhhcccchHHHHHhHHHHhhhhH
Confidence 666666666666666666666666655555555554444444445555555555555555555554443
No 36
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=97.78 E-value=0.059 Score=57.56 Aligned_cols=207 Identities=12% Similarity=0.210 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC---CCCHHHHH
Q 002520 669 IKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKN---AISVDDID 745 (913)
Q Consensus 669 IdeLekEIEeL~kqRdEInaELqeLReERdELeSeLKkLVeEIkrLReEInEKrKEIesLQSeLsKLrS---~KSVEELQ 745 (913)
+..++.++..+....+.+..++......-..+......+......+...|......|..+-+++..++. ..+..+|+
T Consensus 47 ~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~~l~ 126 (264)
T PF06008_consen 47 LDPLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQELIEQVESLNENGDQLPSEDLQ 126 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCCCCHHHHH
Confidence 333333333333333333333333333333333333444444444444444444444444444433332 45666666
Q ss_pred HHHHHHHHHHhhcCC-CcHHHHH-HHHHHHHHHHHHHHhhhcccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 746 GSIRNMEHRIAHETL-PLKEEKQ-IIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKFLRKEADSLRENVIKA 823 (913)
Q Consensus 746 eEIkeLE~QIQheSL-sLqEEKQ-lIrEISQLEkeRKdV~snIs~kakIEqSLeEKenIqEQIKELKKEIDELReKIkkL 823 (913)
..++..+..++..+- .+...++ +-.|...-+..+..+...+. ..+ .+.+.-...++..+.+.
T Consensus 127 ~~l~ea~~mL~emr~r~f~~~~~~Ae~El~~A~~LL~~v~~~~~---~~~-------------~~~~~l~~~i~~~L~~~ 190 (264)
T PF06008_consen 127 RALAEAQRMLEEMRKRDFTPQRQNAEDELKEAEDLLSRVQKWFQ---KPQ-------------QENESLAEAIRDDLNDY 190 (264)
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHh---hHH-------------HhhHHHHHHHHHHHHHH
Confidence 666666665555552 4555555 55555555555444333332 111 11122223333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002520 824 EAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKDDTKQANDLAS 891 (913)
Q Consensus 824 ekELEeLkkKIeEAqaELdELqeElrAaeEeRQEAyekIkELRkQ~DeLNsEFyq~Rr~l~kARdLAa 891 (913)
..++..+..-++++.....+...-...-.......-.+...+..+.......+-..+..+..|.+|..
T Consensus 191 ~~kL~Dl~~~l~eA~~~~~ea~~ln~~n~~~l~~~~~k~~~l~~~~~~~~~~L~~a~~~L~~a~~ll~ 258 (264)
T PF06008_consen 191 NAKLQDLRDLLNEAQNKTREAEDLNRANQKNLEDLEKKKQELSEQQNEVSETLKEAEDLLDQANDLLQ 258 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444333333333333333333333333333344444445555555555555566666655543
No 37
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=97.76 E-value=0.0047 Score=72.46 Aligned_cols=24 Identities=13% Similarity=0.220 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 664 NLREQIKAAQSKVDEKTRSRDAIR 687 (913)
Q Consensus 664 eLKaKIdeLekEIEeL~kqRdEIn 687 (913)
+++.+|..+..+++.++..+.+..
T Consensus 110 ~~e~ei~kl~~e~~elr~~~~~~~ 133 (546)
T KOG0977|consen 110 KLEIEITKLREELKELRKKLEKAE 133 (546)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHH
Confidence 344444444444444444444433
No 38
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=97.76 E-value=0.042 Score=64.85 Aligned_cols=86 Identities=16% Similarity=0.270 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 809 LRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKDDTKQAND 888 (913)
Q Consensus 809 LKKEIDELReKIkkLekELEeLkkKIeEAqaELdELqeElrAaeEeRQEAyekIkELRkQ~DeLNsEFyq~Rr~l~kARd 888 (913)
+.+++..+.+.+..+...+......+..++..+.++.+++..+...+.+..+.+..+++.-..+...+-+++..+...+.
T Consensus 353 lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ikr 432 (569)
T PRK04778 353 LEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIKR 432 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444455566666666666666666666666666666666666666666666665555
Q ss_pred hhhcCC
Q 002520 889 LASKGD 894 (913)
Q Consensus 889 LAa~~d 894 (913)
+.-+.+
T Consensus 433 ~l~k~~ 438 (569)
T PRK04778 433 YLEKSN 438 (569)
T ss_pred HHHHcC
Confidence 444443
No 39
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=97.75 E-value=0.032 Score=71.04 Aligned_cols=90 Identities=16% Similarity=0.357 Sum_probs=51.6
Q ss_pred hhhhhhccccccccCcceeeccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 635 DASESRNIGVEVVKQPFYFLVKVPRYDDENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSA 714 (913)
Q Consensus 635 DaVEe~kE~Ld~LRr~fYf~Vr~rRLdDPeLKaKIdeLekEIEeL~kqRdEInaELqeLReERdELeSeLKkLVeEIkrL 714 (913)
+++=++.=.|+.+..|.| ..+.+.|+.++..+...+..+..+..++.+.+......+..+...+.....++...
T Consensus 581 dslyGl~LdL~~I~~pd~------~~~ee~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~ 654 (1201)
T PF12128_consen 581 DSLYGLSLDLSAIDVPDY------AASEEELRERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQELKQA 654 (1201)
T ss_pred cccceeEeehhhcCCchh------hcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344455555555333333 11346788888888888777777777666666666665555555555555555555
Q ss_pred HHHHHHHHHHHHHHHH
Q 002520 715 RESLKSKRQEIDSVQS 730 (913)
Q Consensus 715 ReEInEKrKEIesLQS 730 (913)
+..+..+..+...++.
T Consensus 655 ~~~~~~l~~~~~~~~~ 670 (1201)
T PF12128_consen 655 EQDLQRLKNEREQLKQ 670 (1201)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5444444444444433
No 40
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.74 E-value=0.0081 Score=72.57 Aligned_cols=50 Identities=26% Similarity=0.458 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 002520 686 IRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMM 735 (913)
Q Consensus 686 InaELqeLReERdELeSeLKkLVeEIkrLReEInEKrKEIesLQSeLsKL 735 (913)
++++++..|..=.+|+.+|..+.+.-+.++.++..++.+.+.|+.++..+
T Consensus 430 LraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L 479 (697)
T PF09726_consen 430 LRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNL 479 (697)
T ss_pred HHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444555555555555555556666666666666665555433
No 41
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=97.70 E-value=0.064 Score=64.32 Aligned_cols=100 Identities=12% Similarity=0.119 Sum_probs=44.5
Q ss_pred hhHHHHHHHhHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 789 HDEVQLAFDQKDQIEEKMKFLRKEA---------------------DSLRENVIKAEAATQAVKKLHREESEKLKRLLGQ 847 (913)
Q Consensus 789 kakIEqSLeEKenIqEQIKELKKEI---------------------DELReKIkkLekELEeLkkKIeEAqaELdELqeE 847 (913)
+..+.+.+.+...+++++.++.... .+|.+++..+...+..++.++.....++..++.+
T Consensus 152 k~t~SRAlsQN~eLK~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~e~le~K~qE~~~Lq~q 231 (617)
T PF15070_consen 152 KATASRALSQNRELKEQLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKLGELQEKLHNLKEKLELKSQEAQSLQEQ 231 (617)
T ss_pred chHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 3445555555555555555553322 1333333333333333333333333334444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 848 FKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKDDTKQAND 888 (913)
Q Consensus 848 lrAaeEeRQEAyekIkELRkQ~DeLNsEFyq~Rr~l~kARd 888 (913)
.+.....++........+..+...++..|..-...+...+.
T Consensus 232 ~dq~~~~Lqqy~a~~q~l~~e~e~L~~q~l~Qtql~d~lq~ 272 (617)
T PF15070_consen 232 RDQYLGHLQQYVAAYQQLASEKEELHKQLLQQTQLMDRLQH 272 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44433344443334444555555666665544444444433
No 42
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=97.69 E-value=0.05 Score=62.46 Aligned_cols=67 Identities=16% Similarity=0.281 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 667 EQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRIN 733 (913)
Q Consensus 667 aKIdeLekEIEeL~kqRdEInaELqeLReERdELeSeLKkLVeEIkrLReEInEKrKEIesLQSeLs 733 (913)
.+++..+++|..+.+.+.....+.+++...+..++.++..+..++.+....+..+.+.|..+...+.
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~ 104 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLN 104 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHH
Confidence 4555555555555555555555555555555555555555555555555555555555554444443
No 43
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=97.67 E-value=0.042 Score=69.96 Aligned_cols=63 Identities=11% Similarity=0.260 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 670 KAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRI 732 (913)
Q Consensus 670 deLekEIEeL~kqRdEInaELqeLReERdELeSeLKkLVeEIkrLReEInEKrKEIesLQSeL 732 (913)
+.|+.+++.+..++........++......+..++..+..++...+.++...+.++..++..+
T Consensus 603 e~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 665 (1201)
T PF12128_consen 603 EELRERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNER 665 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444444444444444444444444444
No 44
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.67 E-value=0.028 Score=67.82 Aligned_cols=42 Identities=17% Similarity=0.421 Sum_probs=22.0
Q ss_pred CHHHHHHHHHHHHHHHhhcCCCcHHHH----------H-HHHHHHHHHHHHHH
Q 002520 740 SVDDIDGSIRNMEHRIAHETLPLKEEK----------Q-IIREIKQLKQRREQ 781 (913)
Q Consensus 740 SVEELQeEIkeLE~QIQheSLsLqEEK----------Q-lIrEISQLEkeRKd 781 (913)
-.+-|+.+++.|..+++..++.++..| + .+.+|++|...+++
T Consensus 445 eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE 497 (1118)
T KOG1029|consen 445 ELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKE 497 (1118)
T ss_pred HHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 445556666666666666654333332 2 34455555555554
No 45
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=97.63 E-value=0.041 Score=68.57 Aligned_cols=96 Identities=11% Similarity=0.241 Sum_probs=71.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhccCCCC
Q 002520 663 ENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSR--INMMKNAIS 740 (913)
Q Consensus 663 PeLKaKIdeLekEIEeL~kqRdEInaELqeLReERdELeSeLKkLVeEIkrLReEInEKrKEIesLQSe--LsKLrS~KS 740 (913)
-.+...|+.|+.++..+..++..+......++..++++...++.+...+.+.+..+..++.+|..|+.. ...+. ..+
T Consensus 657 ~s~d~~ie~le~e~~~l~~~~~~l~~~~~~~e~~l~e~~~~~~~l~~~~~q~~~~~~~~~~em~el~n~~e~~~~~-~~~ 735 (1074)
T KOG0250|consen 657 FSFDDEIEDLEREASRLQKEILELENQRREAEKNLEELEKKLRELSEHIEQIKRRIRKKRAEMTELKNTAEEKQVD-ISK 735 (1074)
T ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcc-hhh
Confidence 567778888888888888877777777788888888888888888888888888888888888877762 22221 456
Q ss_pred HHHHHHHHHHHHHHHhhcC
Q 002520 741 VDDIDGSIRNMEHRIAHET 759 (913)
Q Consensus 741 VEELQeEIkeLE~QIQheS 759 (913)
++++..+|......|....
T Consensus 736 ~~~l~~ei~~~~~eIe~~~ 754 (1074)
T KOG0250|consen 736 LEDLAREIKKKEKEIEEKE 754 (1074)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 7777777777666666554
No 46
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=97.61 E-value=0.15 Score=54.90 Aligned_cols=65 Identities=15% Similarity=0.192 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 668 QIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRI 732 (913)
Q Consensus 668 KIdeLekEIEeL~kqRdEInaELqeLReERdELeSeLKkLVeEIkrLReEInEKrKEIesLQSeL 732 (913)
+...+..+++.+...++.++.++......+..+..++..++..+........++..+|..|+.++
T Consensus 69 eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl 133 (312)
T PF00038_consen 69 EKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEEL 133 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHH
Confidence 33334444444444444444444444444445554444444444444444444555555555444
No 47
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=97.58 E-value=0.16 Score=58.55 Aligned_cols=70 Identities=11% Similarity=0.314 Sum_probs=52.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 663 ENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRI 732 (913)
Q Consensus 663 PeLKaKIdeLekEIEeL~kqRdEInaELqeLReERdELeSeLKkLVeEIkrLReEInEKrKEIesLQSeL 732 (913)
..+..+|..+++.|....+++..+.+.++.++.+...+..+|.....++..++..|.+....+..|+.+.
T Consensus 41 ~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~ 110 (420)
T COG4942 41 KQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQE 110 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3577777777777777777777777777777777777777777777777777777777777777665544
No 48
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=97.57 E-value=0.0074 Score=64.67 Aligned_cols=65 Identities=18% Similarity=0.256 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 668 QIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRI 732 (913)
Q Consensus 668 KIdeLekEIEeL~kqRdEInaELqeLReERdELeSeLKkLVeEIkrLReEInEKrKEIesLQSeL 732 (913)
.|..++.++..+.-.+..+...+.++++++..++..+-.+..++..++.++..+..+|+.++.++
T Consensus 11 ~iq~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~ 75 (239)
T COG1579 11 AIQKLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERI 75 (239)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666666666666666666555555555555555554444444444433
No 49
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=97.57 E-value=0.02 Score=60.51 Aligned_cols=59 Identities=17% Similarity=0.205 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 801 QIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAY 859 (913)
Q Consensus 801 nIqEQIKELKKEIDELReKIkkLekELEeLkkKIeEAqaELdELqeElrAaeEeRQEAy 859 (913)
.+.++|+.+...+.+...+...+...+..|...++.+...|...+..+..+...++..+
T Consensus 173 ~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~eld~~l 231 (237)
T PF00261_consen 173 EYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEELDQTL 231 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444444444444444444444333
No 50
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=97.56 E-value=0.16 Score=54.34 Aligned_cols=151 Identities=9% Similarity=0.193 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHHHHHhhcC-----CCcHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHhHHHHHHHHHHH-HHHHH
Q 002520 741 VDDIDGSIRNMEHRIAHET-----LPLKEEKQIIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKFL-RKEAD 814 (913)
Q Consensus 741 VEELQeEIkeLE~QIQheS-----LsLqEEKQlIrEISQLEkeRKdV~snIs~kakIEqSLeEKenIqEQIKEL-KKEID 814 (913)
+..+...|..+-.++.... ++-..=.+.+.++..+-..++... +...+..+...+..-..+-.+|+.. .+-..
T Consensus 96 i~~l~~~i~~l~~~~~~l~~~~~~~~~~~l~~~l~ea~~mL~emr~r~-f~~~~~~Ae~El~~A~~LL~~v~~~~~~~~~ 174 (264)
T PF06008_consen 96 IQNLQDNIQELIEQVESLNENGDQLPSEDLQRALAEAQRMLEEMRKRD-FTPQRQNAEDELKEAEDLLSRVQKWFQKPQQ 174 (264)
T ss_pred HHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 3344444444444444333 222222338888888888887753 4443344444444434444444442 44444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 002520 815 SLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKDDTKQANDLASK 892 (913)
Q Consensus 815 ELReKIkkLekELEeLkkKIeEAqaELdELqeElrAaeEeRQEAyekIkELRkQ~DeLNsEFyq~Rr~l~kARdLAa~ 892 (913)
+.+.....+...+.....++..+++-+.+.....+.+...-...-..+.++..++..+..........+..|+++-.+
T Consensus 175 ~~~~l~~~i~~~L~~~~~kL~Dl~~~l~eA~~~~~ea~~ln~~n~~~l~~~~~k~~~l~~~~~~~~~~L~~a~~~L~~ 252 (264)
T PF06008_consen 175 ENESLAEAIRDDLNDYNAKLQDLRDLLNEAQNKTREAEDLNRANQKNLEDLEKKKQELSEQQNEVSETLKEAEDLLDQ 252 (264)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555555555555555555555555555555544444445666677777777888888888888888887654
No 51
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=97.55 E-value=0.062 Score=64.38 Aligned_cols=37 Identities=22% Similarity=0.458 Sum_probs=27.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 663 ENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKE 699 (913)
Q Consensus 663 PeLKaKIdeLekEIEeL~kqRdEInaELqeLReERdE 699 (913)
.+.-.+|..|+++++.+.++|++++.+++.+|.+...
T Consensus 405 ~e~~QRva~lEkKvqa~~kERDalr~e~kslk~ela~ 441 (961)
T KOG4673|consen 405 EEYHQRVATLEKKVQALTKERDALRREQKSLKKELAA 441 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 5677778888888888888888888877766655444
No 52
>PRK04863 mukB cell division protein MukB; Provisional
Probab=97.54 E-value=0.13 Score=66.99 Aligned_cols=121 Identities=16% Similarity=0.248 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhcc---
Q 002520 667 EQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQ-------SRINMMK--- 736 (913)
Q Consensus 667 aKIdeLekEIEeL~kqRdEInaELqeLReERdELeSeLKkLVeEIkrLReEInEKrKEIesLQ-------SeLsKLr--- 736 (913)
.++..+...++.+..++......+..++..+..+..++..+..++..++..+.++..++..++ ..+..+.
T Consensus 348 ~ei~~l~~~LeELee~Lee~eeeLeeleeeleeleeEleelEeeLeeLqeqLaelqqel~elQ~el~q~qq~i~~Le~~~ 427 (1486)
T PRK04863 348 EKIERYQADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQALERAK 427 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455555555555555555444444444444444444444444443333333332 2221111
Q ss_pred -----CCCCHHHHHHHHHHHHHHHhhcC--C-CcHHHHH-HHHHHHHHHHHHHHhhhccc
Q 002520 737 -----NAISVDDIDGSIRNMEHRIAHET--L-PLKEEKQ-IIREIKQLKQRREQISSSIG 787 (913)
Q Consensus 737 -----S~KSVEELQeEIkeLE~QIQheS--L-sLqEEKQ-lIrEISQLEkeRKdV~snIs 787 (913)
..-|.++|+..+.....++...+ + .+..+.. +...+++++.....+....+
T Consensus 428 ~~~~~~~~SdEeLe~~LenF~aklee~e~qL~elE~kL~~lea~leql~~~~~~l~~~~G 487 (1486)
T PRK04863 428 QLCGLPDLTADNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVRKIAG 487 (1486)
T ss_pred HHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 14799999999999999988877 3 4555544 66677777777666554444
No 53
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=97.50 E-value=0.14 Score=60.18 Aligned_cols=47 Identities=11% Similarity=0.185 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 806 MKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAAD 852 (913)
Q Consensus 806 IKELKKEIDELReKIkkLekELEeLkkKIeEAqaELdELqeElrAae 852 (913)
+...+.++++.+..+..+..++..|+..+..++.+|...+..+..+.
T Consensus 283 l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lk 329 (522)
T PF05701_consen 283 LASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLK 329 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444333333333333333333333
No 54
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.48 E-value=0.07 Score=66.12 Aligned_cols=82 Identities=13% Similarity=0.129 Sum_probs=41.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 797 DQKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHF 876 (913)
Q Consensus 797 eEKenIqEQIKELKKEIDELReKIkkLekELEeLkkKIeEAqaELdELqeElrAaeEeRQEAyekIkELRkQ~DeLNsEF 876 (913)
...+.|+-.+.++..++...+..+..+...+..|..++..+.+++..+......+.+++....+.+...-.++..+...+
T Consensus 815 ~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~dt~i~~~~~~~ 894 (1174)
T KOG0933|consen 815 NEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDIDTEISGLLTSQ 894 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhHHHhhhhhHH
Confidence 33445555555555566555555555555555555555555555555555444444444444444444444444433333
Q ss_pred HH
Q 002520 877 WK 878 (913)
Q Consensus 877 yq 878 (913)
-.
T Consensus 895 e~ 896 (1174)
T KOG0933|consen 895 EK 896 (1174)
T ss_pred HH
Confidence 33
No 55
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=97.40 E-value=0.034 Score=69.28 Aligned_cols=59 Identities=12% Similarity=0.237 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 670 KAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSV 728 (913)
Q Consensus 670 deLekEIEeL~kqRdEInaELqeLReERdELeSeLKkLVeEIkrLReEInEKrKEIesL 728 (913)
.+++.++..++++.+++...+.+.+..-.++...-.++..+..+++..+++.+++++.|
T Consensus 1418 ~~~~~~l~~~~ae~eq~~~~v~ea~~~aseA~~~Aq~~~~~a~as~~q~~~s~~el~~L 1476 (1758)
T KOG0994|consen 1418 GDADTQLRSKLAEAEQTLSMVREAKLSASEAQQSAQRALEQANASRSQMEESNRELRNL 1476 (1758)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666665555555554444444444444444444444444433
No 56
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=97.40 E-value=0.097 Score=61.91 Aligned_cols=25 Identities=32% Similarity=0.562 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 801 QIEEKMKFLRKEADSLRENVIKAEA 825 (913)
Q Consensus 801 nIqEQIKELKKEIDELReKIkkLek 825 (913)
.+.+.++.+++++..|+..+..++.
T Consensus 166 ~le~e~~~Lk~en~rl~~~l~~~r~ 190 (546)
T KOG0977|consen 166 ALEDELKRLKAENSRLREELARARK 190 (546)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 3344444444444444444444443
No 57
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.38 E-value=0.26 Score=58.40 Aligned_cols=57 Identities=11% Similarity=0.180 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 810 RKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLK 866 (913)
Q Consensus 810 KKEIDELReKIkkLekELEeLkkKIeEAqaELdELqeElrAaeEeRQEAyekIkELR 866 (913)
+..++++...+.+...+...|+.-+......+.+.++.+.....+..++-......+
T Consensus 424 ~el~~ei~~~~~~~~~~~~tLq~~~~~~~~~i~E~~~~l~~~~~el~~~~~~~~~~k 480 (581)
T KOG0995|consen 424 KELLDEISEELHEAENELETLQEHFSNKASTIEEKIQILGEIELELKKAESKYELKK 480 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555556666655555556555555555555555555555555554443333333
No 58
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=97.37 E-value=0.24 Score=65.05 Aligned_cols=142 Identities=15% Similarity=0.263 Sum_probs=83.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 762 LKEEKQIIREIKQLKQRREQISSSIGEHDEVQLAFDQ-KDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEK 840 (913)
Q Consensus 762 LqEEKQlIrEISQLEkeRKdV~snIs~kakIEqSLeE-KenIqEQIKELKKEIDELReKIkkLekELEeLkkKIeEAqaE 840 (913)
+.+=+++..+|.+|+..+......+. .+...+.+ +..++.+++.+..++..+.++++.++.....|...+.+.++.
T Consensus 1306 ~~~~~kL~~ei~~Lk~el~~ke~~~~---el~~~~~~~q~~~k~qld~l~~e~~~lt~~~~ql~~~~~rL~~~~~e~~~q 1382 (1822)
T KOG4674|consen 1306 KNDYEKLKSEISRLKEELEEKENLIA---ELKKELNRLQEKIKKQLDELNNEKANLTKELEQLEDLKTRLAAALSEKNAQ 1382 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444466677777777664444333 55555554 346667777888888888888888877777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc--CCHHHHHHHHHHHHH
Q 002520 841 LKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKDDTKQANDLASK--GDREALQHLCVNQVR 907 (913)
Q Consensus 841 LdELqeElrAaeEeRQEAyekIkELRkQ~DeLNsEFyq~Rr~l~kARdLAa~--~dv~eLqelc~~QVE 907 (913)
.-++.....+.+..+.....++.++...+. ++.+....+..|.+++.+.+. -.-.+++..|....+
T Consensus 1383 ~~el~~~~~~~~~~~e~t~rk~e~~~~k~~-~~~e~~sl~eeL~e~~q~~~~~~s~~e~i~~e~~~~~k 1450 (1822)
T KOG4674|consen 1383 ELELSDKKKAHELMQEDTSRKLEKLKEKLE-LSEELESLKEELEELQQLQATLQSETEAITKELFEAKK 1450 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHHHH
Confidence 666666666655555555555555555554 444555555555544444332 333444555544443
No 59
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.36 E-value=0.034 Score=68.80 Aligned_cols=65 Identities=18% Similarity=0.184 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 824 EAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKDDTKQAND 888 (913)
Q Consensus 824 ekELEeLkkKIeEAqaELdELqeElrAaeEeRQEAyekIkELRkQ~DeLNsEFyq~Rr~l~kARd 888 (913)
+.++......+.++..++.++.+.++..+++..+.+..+..++.+.........+.+..+..+++
T Consensus 289 ~~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~v~~~~~~le~lk~~~~~rq~~i~~~~k~i~~~q~ 353 (1072)
T KOG0979|consen 289 RSKISQKQRELNEALAKVQEKFEKLKEIEDEVEEKKNKLESLKKAAEKRQKRIEKAKKMILDAQA 353 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344444444444566666666666666677777777777777777777777666666555543
No 60
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=97.33 E-value=0.18 Score=61.43 Aligned_cols=77 Identities=9% Similarity=0.057 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 803 EEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKY 879 (913)
Q Consensus 803 qEQIKELKKEIDELReKIkkLekELEeLkkKIeEAqaELdELqeElrAaeEeRQEAyekIkELRkQ~DeLNsEFyq~ 879 (913)
..++..++-.+-+.|-+.+.++..+.+|.++.+.+-.....|++..+..+..+|.......++..|.+++.+..+.+
T Consensus 329 trqkadirc~LlEarrk~egfddk~~eLEKkrd~al~dvr~i~e~k~nve~elqsL~~l~aerqeQidelKn~if~~ 405 (1265)
T KOG0976|consen 329 TRQKADIRCALLEARRKAEGFDDKLNELEKKRDMALMDVRSIQEKKENVEEELQSLLELQAERQEQIDELKNHIFRL 405 (1265)
T ss_pred HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 34555666666666777777777788888888888888888888888888888777777777777777777665543
No 61
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=97.32 E-value=0.25 Score=64.02 Aligned_cols=34 Identities=15% Similarity=0.252 Sum_probs=16.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 663 ENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRAS 696 (913)
Q Consensus 663 PeLKaKIdeLekEIEeL~kqRdEInaELqeLReE 696 (913)
.+|+.+|..+..++..+..++..+...+..+..+
T Consensus 745 ~el~~~IaeL~~~i~~l~~~l~~l~~r~~~L~~e 778 (1353)
T TIGR02680 745 AELDARLAAVDDELAELARELRALGARQRALADE 778 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555544444444444444443
No 62
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=97.31 E-value=0.14 Score=60.11 Aligned_cols=89 Identities=21% Similarity=0.247 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------H
Q 002520 805 KMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQA--------------Y 870 (913)
Q Consensus 805 QIKELKKEIDELReKIkkLekELEeLkkKIeEAqaELdELqeElrAaeEeRQEAyekIkELRkQ~--------------D 870 (913)
.....+.+....+.++..++.+++..+..+..+..+|.....+..++...-..+...|+.|...- .
T Consensus 380 Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa~ke~eaaKasEa~Ala~ik~l~e~~~~~~~~~~~~~~~Vt 459 (522)
T PF05701_consen 380 EAEEAKKEAEEAKEEVEKAKEEAEQTKAAIKTAEERLEAALKEAEAAKASEALALAEIKALSESESSSRASDSESSSKVT 459 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCCCCee
Confidence 34444555666666666666666666666666666666666666666666666777777665432 1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcC
Q 002520 871 DKNQHFWKYKDDTKQANDLASKG 893 (913)
Q Consensus 871 eLNsEFyq~Rr~l~kARdLAa~~ 893 (913)
.-..+|+...+-...+.++|-++
T Consensus 460 ls~eEy~~L~~ka~e~ee~a~kk 482 (522)
T PF05701_consen 460 LSLEEYESLSKKAEEAEELAEKK 482 (522)
T ss_pred ecHHHHHHHHHHHHHHHHHHHHH
Confidence 23356776666666677766643
No 63
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=97.30 E-value=0.27 Score=60.00 Aligned_cols=36 Identities=11% Similarity=0.153 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 665 LREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEY 700 (913)
Q Consensus 665 LKaKIdeLekEIEeL~kqRdEInaELqeLReERdEL 700 (913)
|+..+..++.+|..|......+..+.+++.+-+..+
T Consensus 97 lEddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~ 132 (1265)
T KOG0976|consen 97 LEDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGA 132 (1265)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444433333333333333333333333
No 64
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.30 E-value=0.057 Score=67.20 Aligned_cols=116 Identities=15% Similarity=0.235 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHHHHhhhcccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 768 IIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQ 847 (913)
Q Consensus 768 lIrEISQLEkeRKdV~snIs~kakIEqSLeEKenIqEQIKELKKEIDELReKIkkLekELEeLkkKIeEAqaELdELqeE 847 (913)
.+.++.-|+..++- .++.+...+..+..++++++.++..+..+..++..+...+..+...+.++...++.++..
T Consensus 379 ~~~el~~ln~~~r~------~~~~ld~~~~~~~elE~r~k~l~~sver~~~~~~~L~~~i~s~~~~~~e~~~d~~~l~~~ 452 (1141)
T KOG0018|consen 379 ALEELEVLNRNMRS------DQDTLDHELERRAELEARIKQLKESVERLDKRRNKLAAKITSLSRSYEELKHDLDSLESL 452 (1141)
T ss_pred hHHHHHHHHHHHHH------HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHH
Confidence 34445555555443 233455556667788888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002520 848 FKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKDDTKQANDL 889 (913)
Q Consensus 848 lrAaeEeRQEAyekIkELRkQ~DeLNsEFyq~Rr~l~kARdL 889 (913)
...+..+-.+.-..|...+.++..+...++..-|..+.+.-+
T Consensus 453 ~~~~~~~~~e~n~eL~~~~~ql~das~dr~e~sR~~~~~eav 494 (1141)
T KOG0018|consen 453 VSSAEEEPYELNEELVEVLDQLLDASADRHEGSRRSRKQEAV 494 (1141)
T ss_pred HhhhhhhHHHHHHHHHHHHHHHHhhhhhhcccHHHHHHHHHH
Confidence 888888888888888888888888888888766666555443
No 65
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.29 E-value=0.62 Score=55.40 Aligned_cols=24 Identities=17% Similarity=0.292 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 709 SDERSARESLKSKRQEIDSVQSRI 732 (913)
Q Consensus 709 eEIkrLReEInEKrKEIesLQSeL 732 (913)
+++.+.+.+.+++..++..++.++
T Consensus 332 ~dve~mn~Er~~l~r~l~~i~~~~ 355 (581)
T KOG0995|consen 332 EDVERMNLERNKLKRELNKIQSEL 355 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444333
No 66
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.26 E-value=0.36 Score=58.87 Aligned_cols=17 Identities=0% Similarity=0.321 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHhhcC
Q 002520 743 DIDGSIRNMEHRIAHET 759 (913)
Q Consensus 743 ELQeEIkeLE~QIQheS 759 (913)
.|+.+...|+++++.++
T Consensus 441 ql~~eletLn~k~qqls 457 (1118)
T KOG1029|consen 441 QLQQELETLNFKLQQLS 457 (1118)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 34444444444444444
No 67
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=97.25 E-value=0.17 Score=59.92 Aligned_cols=22 Identities=0% Similarity=-0.129 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 002520 862 WQSLKKQAYDKNQHFWKYKDDT 883 (913)
Q Consensus 862 IkELRkQ~DeLNsEFyq~Rr~l 883 (913)
-+..|..+..++.+|-++.+.-
T Consensus 509 ~nRfr~~~~~V~~~f~~Ae~lF 530 (569)
T PRK04778 509 ANRYRSDNEEVAEALNEAERLF 530 (569)
T ss_pred HhccCCCCHHHHHHHHHHHHHH
Confidence 3344444455555554444433
No 68
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=97.25 E-value=0.12 Score=67.56 Aligned_cols=172 Identities=14% Similarity=0.196 Sum_probs=104.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhhcC-
Q 002520 681 RSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKNAISVDDIDGSIRNMEHRIAHET- 759 (913)
Q Consensus 681 kqRdEInaELqeLReERdELeSeLKkLVeEIkrLReEInEKrKEIesLQSeLsKLrS~KSVEELQeEIkeLE~QIQheS- 759 (913)
...+.....+..++....++..+-+-+...+.+.+.+|..++.++..|.+++.+++ .+.-+++.+++.+...--..+
T Consensus 101 ~~~~~~~~~~~~l~~~~se~~~qkr~l~~~le~~~~ele~l~~~n~~l~~ql~ss~--~~~~e~e~r~~e~~s~~vs~q~ 178 (1822)
T KOG4674|consen 101 WEIDALKLENSQLRRAKSELQEQKRQLMELLERQKAELEALESENKDLNDQLKSST--KTLSELEARLQETQSEDVSSQL 178 (1822)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444445444455555555666666666666666666666555 566677776666554433333
Q ss_pred -C-CcHHHHH-HHHHHHHHHHHHHHhhhcccchhHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 760 -L-PLKEEKQ-IIREIKQLKQRREQISSSIGEHDEVQLAF-DQKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHR 835 (913)
Q Consensus 760 -L-sLqEEKQ-lIrEISQLEkeRKdV~snIs~kakIEqSL-eEKenIqEQIKELKKEIDELReKIkkLekELEeLkkKIe 835 (913)
+ .|+-||. +..++.-|...+..+..... .+.+.- .....|+..+..++..+..++.+++.+......|.+++.
T Consensus 179 k~~rl~QEksll~s~~~wL~~eL~~~~ekll---~~~re~s~~~~~L~~~L~~~~~~~~~~q~~~~~l~q~~~eLs~~ie 255 (1822)
T KOG4674|consen 179 KEERLEQEKSLLESENKWLSRELSKVNEKLL---SLRREHSIEVEQLEEKLSDLKESLAELQEKNKSLKQQNEELSKKIE 255 (1822)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH---HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 6777888 77788888777766554433 111110 113466677777788888888888888888888887777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 002520 836 EESEKLKRLLGQFKAADEIRQE 857 (913)
Q Consensus 836 EAqaELdELqeElrAaeEeRQE 857 (913)
.....+..+++.......+-.+
T Consensus 256 ~~~~~ls~~k~t~~s~~~kf~~ 277 (1822)
T KOG4674|consen 256 SLNLELSKLKDTAESSEEKFEK 277 (1822)
T ss_pred HHHHHHHHHHhhhHHHHHHHHH
Confidence 7777777766655555444333
No 69
>PRK04863 mukB cell division protein MukB; Provisional
Probab=97.24 E-value=0.18 Score=65.75 Aligned_cols=30 Identities=10% Similarity=0.206 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002520 860 KHWQSLKKQAYDKNQHFWKYKDDTKQANDL 889 (913)
Q Consensus 860 ekIkELRkQ~DeLNsEFyq~Rr~l~kARdL 889 (913)
..+..++.++.++...+.+-++.-+-.+++
T Consensus 513 ~~~~~~~~~~~~l~~~~~~q~~~~~~~~~~ 542 (1486)
T PRK04863 513 EQLQQLRMRLSELEQRLRQQQRAERLLAEF 542 (1486)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555666666555444444444443
No 70
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=97.21 E-value=0.41 Score=59.16 Aligned_cols=22 Identities=14% Similarity=0.092 Sum_probs=15.2
Q ss_pred CCcCCCchhhhhhhcccccccc
Q 002520 627 STPEGSTVDASESRNIGVEVVK 648 (913)
Q Consensus 627 k~~eesLKDaVEe~kE~Ld~LR 648 (913)
++.+..|...+.++.+.|+.+|
T Consensus 223 skte~eLr~QvrdLtEkLetlR 244 (1243)
T KOG0971|consen 223 SKTEEELRAQVRDLTEKLETLR 244 (1243)
T ss_pred ccchHHHHHHHHHHHHHHHHHH
Confidence 3444557777888888888755
No 71
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=97.21 E-value=0.37 Score=60.77 Aligned_cols=212 Identities=13% Similarity=0.160 Sum_probs=103.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------
Q 002520 665 LREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSR------------- 731 (913)
Q Consensus 665 LKaKIdeLekEIEeL~kqRdEInaELqeLReERdELeSeLKkLVeEIkrLReEInEKrKEIesLQSe------------- 731 (913)
+..+|....++.+...+.+.+......+.+.+-+.+..+-++.+++....+.++..++++|.....+
T Consensus 1420 ~~~~l~~~~ae~eq~~~~v~ea~~~aseA~~~Aq~~~~~a~as~~q~~~s~~el~~Li~~v~~Flt~~~adp~si~~vA~ 1499 (1758)
T KOG0994|consen 1420 ADTQLRSKLAEAEQTLSMVREAKLSASEAQQSAQRALEQANASRSQMEESNRELRNLIQQVRDFLTQPDADPDSIEEVAE 1499 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 4445555555555555555554444444554444454445555555555555566665555433211
Q ss_pred -HHhccCCCCHHHHHHHHHHHHHHHhhcC-C--CcHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHhHHHHHHHHH
Q 002520 732 -INMMKNAISVDDIDGSIRNMEHRIAHET-L--PLKEEKQIIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMK 807 (913)
Q Consensus 732 -LsKLrS~KSVEELQeEIkeLE~QIQheS-L--sLqEEKQlIrEISQLEkeRKdV~snIs~kakIEqSLeEKenIqEQIK 807 (913)
.-.+-=-.+.++|+..-..+..++..+. + -|.+=|.-+....+|...-+..+.. -+.++.+.+
T Consensus 1500 ~vL~l~lp~tpeqi~~L~~~I~e~v~sL~nVd~IL~~T~~di~ra~~L~s~A~~a~~~-------------A~~v~~~ae 1566 (1758)
T KOG0994|consen 1500 EVLALELPLTPEQIQQLTGEIQERVASLPNVDAILSRTKGDIARAENLQSEAERARSR-------------AEDVKGQAE 1566 (1758)
T ss_pred HHHhccCCCCHHHHHHHHHHHHHHHHhcccHHHHHHhhhhhHHHHHHHHHHHHHHHhH-------------HHHHHHHHH
Confidence 1111112455555555444444444443 1 2333233222233333222221111 112222233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 808 FLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKDDTKQAN 887 (913)
Q Consensus 808 ELKKEIDELReKIkkLekELEeLkkKIeEAqaELdELqeElrAaeEeRQEAyekIkELRkQ~DeLNsEFyq~Rr~l~kAR 887 (913)
..+..+.+-......+...|+.....+.-++..|.+++++..+++.....+-..+.+|-..+.++...+.++-.....|.
T Consensus 1567 ~V~eaL~~Ad~Aq~~a~~ai~~a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~qns~~A~~a~ 1646 (1758)
T KOG0994|consen 1567 DVVEALEEADVAQGEAQDAIQGADRDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEELKHKAAQNSAEAKQAE 1646 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 33333333333333344445555555666667777777777777777777777777777777766666666555544444
Q ss_pred Hh
Q 002520 888 DL 889 (913)
Q Consensus 888 dL 889 (913)
..
T Consensus 1647 ~~ 1648 (1758)
T KOG0994|consen 1647 KT 1648 (1758)
T ss_pred HH
Confidence 33
No 72
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=97.21 E-value=0.4 Score=57.51 Aligned_cols=70 Identities=13% Similarity=0.272 Sum_probs=45.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 663 ENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAI----SDERSARESLKSKRQEIDSVQSRI 732 (913)
Q Consensus 663 PeLKaKIdeLekEIEeL~kqRdEInaELqeLReERdELeSeLKkLV----eEIkrLReEInEKrKEIesLQSeL 732 (913)
..|+.++..+..+++.+.+++..+...+..+..++..+..+++..- .+..+++.++..++.++...+.++
T Consensus 212 ~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~~GG~~~~~r~~Le~ei~~le~e~~e~~~~l 285 (650)
T TIGR03185 212 EALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRSEGGDLFEEREQLERQLKEIEAARKANRAQL 285 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788888888888888888888888887777777777777665442 223344444444444444444444
No 73
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=97.20 E-value=0.46 Score=60.31 Aligned_cols=39 Identities=31% Similarity=0.298 Sum_probs=31.9
Q ss_pred cchhhhccccCCCCcccccccccccccccccccccccch
Q 002520 387 TEPEVLQGGIDGVDERSISVDNAAVESCTSESVYEESTA 425 (913)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (913)
.-|||||+..+|-++--...|--.+--|.-|-.|.+.|.
T Consensus 243 ISPEvLqs~~~~~g~yG~ecDwWSlGV~~YEMlyG~TPF 281 (1317)
T KOG0612|consen 243 ISPEVLQSQGDGKGEYGRECDWWSLGVFMYEMLYGETPF 281 (1317)
T ss_pred cCHHHHHhhcCCccccCCccchhhhHHHHHHHHcCCCcc
Confidence 469999999998788777888887778888888877775
No 74
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=97.16 E-value=0.24 Score=60.93 Aligned_cols=41 Identities=15% Similarity=0.226 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 804 EKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRL 844 (913)
Q Consensus 804 EQIKELKKEIDELReKIkkLekELEeLkkKIeEAqaELdEL 844 (913)
++++.+++++..++.++..+..++.+..-.+..++.+...+
T Consensus 465 Eele~~~~e~~~lk~~~~~LQ~eLsEk~~~l~~~kee~s~l 505 (775)
T PF10174_consen 465 EELETYQKELKELKAKLESLQKELSEKELQLEDAKEEASKL 505 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHH
Confidence 34444444444444444444444444444444444444433
No 75
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=97.15 E-value=0.054 Score=59.79 Aligned_cols=22 Identities=9% Similarity=0.022 Sum_probs=13.6
Q ss_pred CCCHHHHHHHHHHHHHHHhhcC
Q 002520 738 AISVDDIDGSIRNMEHRIAHET 759 (913)
Q Consensus 738 ~KSVEELQeEIkeLE~QIQheS 759 (913)
.++..-++++-...+|++++..
T Consensus 127 vK~~aRl~aK~~WYeWR~~ll~ 148 (325)
T PF08317_consen 127 VKTYARLEAKKMWYEWRMQLLE 148 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666655
No 76
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=97.13 E-value=0.38 Score=57.05 Aligned_cols=97 Identities=14% Similarity=0.338 Sum_probs=53.8
Q ss_pred hHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-
Q 002520 663 ENLREQIKAAQSKVDE-----KTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMK- 736 (913)
Q Consensus 663 PeLKaKIdeLekEIEe-----L~kqRdEInaELqeLReERdELeSeLKkLVeEIkrLReEInEKrKEIesLQSeLsKLr- 736 (913)
|++...+..++..+.. .+..+..+...+.........+...|..+...-..-+.++..+....+.++..+...+
T Consensus 78 ~~ie~~L~~ae~~~~~~rf~ka~~~i~~~~~~l~~~e~~i~~i~~~l~~L~~~e~~nr~~i~~l~~~y~~lrk~ll~~~~ 157 (560)
T PF06160_consen 78 PEIEEQLFEAEEYADKYRFKKAKQAIKEIEEQLDEIEEDIKEILDELDELLESEEKNREEIEELKEKYRELRKELLAHSF 157 (560)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 5566666555554333 3444555555555555666666666666655555555555555555555555552222
Q ss_pred C-CCCHHHHHHHHHHHHHHHhhcC
Q 002520 737 N-AISVDDIDGSIRNMEHRIAHET 759 (913)
Q Consensus 737 S-~KSVEELQeEIkeLE~QIQheS 759 (913)
+ ..+.+.|..++..++.....-.
T Consensus 158 ~~G~a~~~Le~~L~~ie~~F~~f~ 181 (560)
T PF06160_consen 158 SYGPAIEELEKQLENIEEEFSEFE 181 (560)
T ss_pred hhchhHHHHHHHHHHHHHHHHHHH
Confidence 1 2577777777777766655443
No 77
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.11 E-value=0.094 Score=63.72 Aligned_cols=82 Identities=17% Similarity=0.217 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 804 EKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKDDT 883 (913)
Q Consensus 804 EQIKELKKEIDELReKIkkLekELEeLkkKIeEAqaELdELqeElrAaeEeRQEAyekIkELRkQ~DeLNsEFyq~Rr~l 883 (913)
+++..++.++.++|.--++-..+++.|..-+...+++-..|...+.+..+.+...|..|.+.|.|+..+....++--+.+
T Consensus 566 e~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sLsaEtriKldLfsaLg~akrq~ei~~~~~~~~d~ei 645 (697)
T PF09726_consen 566 EQIRELESELQELRKYEKESEKDTEVLMSALSAMQDKNQHLENSLSAETRIKLDLFSALGDAKRQLEIAQGQLRKKDKEI 645 (697)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555432223345566666666666666667777777777888888888888888888888777666655
Q ss_pred HH
Q 002520 884 KQ 885 (913)
Q Consensus 884 ~k 885 (913)
..
T Consensus 646 ~~ 647 (697)
T PF09726_consen 646 EE 647 (697)
T ss_pred HH
Confidence 43
No 78
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.10 E-value=0.27 Score=53.75 Aligned_cols=62 Identities=8% Similarity=0.255 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 666 REQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDS 727 (913)
Q Consensus 666 KaKIdeLekEIEeL~kqRdEInaELqeLReERdELeSeLKkLVeEIkrLReEInEKrKEIes 727 (913)
..+|..+.++...+..+++.+...+.++..+++++..++..+-++++.++.+|..+.+.|..
T Consensus 37 ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~ 98 (265)
T COG3883 37 DSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVE 98 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444455555554444545555555555555554443
No 79
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=97.10 E-value=0.16 Score=60.16 Aligned_cols=90 Identities=19% Similarity=0.229 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 806 MKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKDDTKQ 885 (913)
Q Consensus 806 IKELKKEIDELReKIkkLekELEeLkkKIeEAqaELdELqeElrAaeEeRQEAyekIkELRkQ~DeLNsEFyq~Rr~l~k 885 (913)
.+.+.+++..+......+...+..=...+..+...+.++..++....+...+..+.+..|++.-..+.....+++..++.
T Consensus 346 ~~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ 425 (560)
T PF06160_consen 346 VRELEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLRE 425 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555555666666666666666666666666777777777766666666666666666
Q ss_pred HHHhhhcCCH
Q 002520 886 ANDLASKGDR 895 (913)
Q Consensus 886 ARdLAa~~dv 895 (913)
.+-...+-+.
T Consensus 426 ikR~lek~nL 435 (560)
T PF06160_consen 426 IKRRLEKSNL 435 (560)
T ss_pred HHHHHHHcCC
Confidence 6666555444
No 80
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=97.10 E-value=0.45 Score=55.46 Aligned_cols=125 Identities=16% Similarity=0.290 Sum_probs=75.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Q 002520 663 ENLREQIKAAQSKVDEKTRSRDAIRDDIQ----------TIRASYKEYAEKLEAAISDERSARESLKSKRQEID------ 726 (913)
Q Consensus 663 PeLKaKIdeLekEIEeL~kqRdEInaELq----------eLReERdELeSeLKkLVeEIkrLReEInEKrKEIe------ 726 (913)
..|+.+|..-+.+|+.|+.+++.+.+.+. .+.++|..|..+|..+-.++..+++.+.+..-+++
T Consensus 333 ~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~Is~e~fe~mn~Ere~L~reL~~i~~~~~~L~k~V~~~~leaq~~~~sl 412 (622)
T COG5185 333 EKLKSEIELKEEEIKALQSNIDELHKQLRKQGISTEQFELMNQEREKLTRELDKINIQSDKLTKSVKSRKLEAQGIFKSL 412 (622)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhHHHHHHHHHHHH
Confidence 45666666666666666666665555443 34566777776676666666666666554443332
Q ss_pred --------HHHHHHH-------hccC----------------------CCCHHHHHHHHHHHHHHHhhcCCCcHHHHH-H
Q 002520 727 --------SVQSRIN-------MMKN----------------------AISVDDIDGSIRNMEHRIAHETLPLKEEKQ-I 768 (913)
Q Consensus 727 --------sLQSeLs-------KLrS----------------------~KSVEELQeEIkeLE~QIQheSLsLqEEKQ-l 768 (913)
.|...++ +..+ .+++.||+..|+..=...+..+|+|++... +
T Consensus 413 ek~~~~~~sl~~~i~~~~~~i~~~~nd~~l~iN~E~~~~~~sg~~~~I~~~i~eln~~i~~~~~~e~nksi~Lee~i~~~ 492 (622)
T COG5185 413 EKTLRQYDSLIQNITRSRSQIGHNVNDSSLKINIEQLFPKGSGINESIKKSILELNDEIQERIKTEENKSITLEEDIKNL 492 (622)
T ss_pred HHHHHHHHHHHHHhcccHHHHhhcCCCCceeeccccCCccccCchHhHHHHHHHHhHHHHHHHHHHhccceeHHHHhhhH
Confidence 2222221 1110 157777777777776666666788888877 7
Q ss_pred HHHHHHHHHHHHHhhhccc
Q 002520 769 IREIKQLKQRREQISSSIG 787 (913)
Q Consensus 769 IrEISQLEkeRKdV~snIs 787 (913)
-..|+.|...+..+...+.
T Consensus 493 ~~~i~El~~~l~~~e~~L~ 511 (622)
T COG5185 493 KHDINELTQILEKLELELS 511 (622)
T ss_pred HhHHHHHHHHHHHHHHHHH
Confidence 7778888777766555444
No 81
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.07 E-value=0.3 Score=53.38 Aligned_cols=61 Identities=10% Similarity=0.249 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 664 NLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQE 724 (913)
Q Consensus 664 eLKaKIdeLekEIEeL~kqRdEInaELqeLReERdELeSeLKkLVeEIkrLReEInEKrKE 724 (913)
.+.+....++.+|+.|..+++++..++..++.+.+.+...|+.+-.+|..++..|.+...-
T Consensus 42 ~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~ 102 (265)
T COG3883 42 ELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQEL 102 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555555555555555555555555555555555555555555555554444433
No 82
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=97.04 E-value=0.34 Score=53.68 Aligned_cols=126 Identities=17% Similarity=0.333 Sum_probs=64.2
Q ss_pred CHHHHHHHHHHHHHHHhhcC--C-CcHHHHH-HHHHHHHHHHHHHHhhhcccchhHHHHHHHhHHHHHHHHHHHHHHHHH
Q 002520 740 SVDDIDGSIRNMEHRIAHET--L-PLKEEKQ-IIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKFLRKEADS 815 (913)
Q Consensus 740 SVEELQeEIkeLE~QIQheS--L-sLqEEKQ-lIrEISQLEkeRKdV~snIs~kakIEqSLeEKenIqEQIKELKKEIDE 815 (913)
..+.|+...+.|...+.... + .|.+.+. +..+|.+|+......... .+. +...++.++.....++..
T Consensus 157 ~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~--D~~-------eL~~lr~eL~~~~~~i~~ 227 (325)
T PF08317_consen 157 NLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEEIESC--DQE-------ELEALRQELAEQKEEIEA 227 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc--CHH-------HHHHHHHHHHHHHHHHHH
Confidence 34444444444444444433 2 4555555 677777777665542211 112 223444444455555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Q 002520 816 LRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQE----AYKHWQSLKKQAYDKNQ 874 (913)
Q Consensus 816 LReKIkkLekELEeLkkKIeEAqaELdELqeElrAaeEeRQE----AyekIkELRkQ~DeLNs 874 (913)
.+.++..++.++..+..++++..++..++..+...++..+.+ ....+..|+.+++.+..
T Consensus 228 ~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r~~t~~Ev~~Lk~~~~~Le~ 290 (325)
T PF08317_consen 228 KKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIREECRGWTRSEVKRLKAKVDALEK 290 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 555555555555555555555555555555555555544433 25566666666666544
No 83
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=97.04 E-value=0.36 Score=50.48 Aligned_cols=26 Identities=27% Similarity=0.446 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 669 IKAAQSKVDEKTRSRDAIRDDIQTIR 694 (913)
Q Consensus 669 IdeLekEIEeL~kqRdEInaELqeLR 694 (913)
|..|..++..+...+.++..+...++
T Consensus 14 i~~L~n~l~elq~~l~~l~~ENk~Lk 39 (194)
T PF15619_consen 14 IKELQNELAELQRKLQELRKENKTLK 39 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444443
No 84
>PRK09039 hypothetical protein; Validated
Probab=97.03 E-value=0.069 Score=59.70 Aligned_cols=48 Identities=27% Similarity=0.351 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 805 KMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAAD 852 (913)
Q Consensus 805 QIKELKKEIDELReKIkkLekELEeLkkKIeEAqaELdELqeElrAae 852 (913)
+|..++.+|..||.++..++..|..++.+..+++.++.++..+++.+.
T Consensus 138 ~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~ 185 (343)
T PRK09039 138 QVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVAL 185 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555555555555555444444455555444444433
No 85
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=97.03 E-value=0.42 Score=57.57 Aligned_cols=40 Identities=3% Similarity=0.204 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 693 IRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRI 732 (913)
Q Consensus 693 LReERdELeSeLKkLVeEIkrLReEInEKrKEIesLQSeL 732 (913)
|+.+...+..++..+..+.......+.++...|..|+.++
T Consensus 27 ~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~ 66 (617)
T PF15070_consen 27 WQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQM 66 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444444444444444444444444444444444444433
No 86
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=96.96 E-value=0.53 Score=54.93 Aligned_cols=26 Identities=8% Similarity=-0.040 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 861 HWQSLKKQAYDKNQHFWKYKDDTKQA 886 (913)
Q Consensus 861 kIkELRkQ~DeLNsEFyq~Rr~l~kA 886 (913)
.++..+-.++++..+...+|-.+.+.
T Consensus 559 ~vqs~~i~ld~~~~~~n~~r~~i~k~ 584 (622)
T COG5185 559 LVQSTEIKLDELKVDLNRKRYKIHKQ 584 (622)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 34444555666666665666555543
No 87
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.95 E-value=0.49 Score=59.13 Aligned_cols=173 Identities=12% Similarity=0.172 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhhcCCCcHH
Q 002520 685 AIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKNAISVDDIDGSIRNMEHRIAHETLPLKE 764 (913)
Q Consensus 685 EInaELqeLReERdELeSeLKkLVeEIkrLReEInEKrKEIesLQSeLsKLrS~KSVEELQeEIkeLE~QIQheSLsLqE 764 (913)
..-.++..++.+.+.|...+..--+.+.+++.++..+.+.++.+++...... -++-+......++|+ ...+
T Consensus 178 ~~h~eL~~lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~~rer~~~~~---~Ie~l~~k~~~v~y~------~~~~ 248 (1072)
T KOG0979|consen 178 QYHIELMDLREDEKSLEDKLTTKTEKLNRLEDEIDKLEKDVERVRERERKKS---KIELLEKKKKWVEYK------KHDR 248 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhccccchH------hhhH
Confidence 3344455566667777776777777778888888888888877766544221 122222222222222 2222
Q ss_pred HHH-HHHHHHHHHHHHHHhhhccc----chhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 765 EKQ-IIREIKQLKQRREQISSSIG----EHDEVQLAFDQKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESE 839 (913)
Q Consensus 765 EKQ-lIrEISQLEkeRKdV~snIs----~kakIEqSLeEKenIqEQIKELKKEIDELReKIkkLekELEeLkkKIeEAqa 839 (913)
|.. .......++..++.+..-+. ++.+++. ++.....+++.+..++++...++.+.-..++.+.+++.++..
T Consensus 249 ey~~~k~~~~r~k~~~r~l~k~~~pi~~~~eeLe~---~~~et~~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~v~~~~~ 325 (1072)
T KOG0979|consen 249 EYNAYKQAKDRAKKELRKLEKEIKPIEDKKEELES---EKKETRSKISQKQRELNEALAKVQEKFEKLKEIEDEVEEKKN 325 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHh---HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 22222233333322211111 1112221 233344444444444444444444444455555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 840 KLKRLLGQFKAADEIRQEAYKHWQSLKKQA 869 (913)
Q Consensus 840 ELdELqeElrAaeEeRQEAyekIkELRkQ~ 869 (913)
++..++.+.........++...|..++..+
T Consensus 326 ~le~lk~~~~~rq~~i~~~~k~i~~~q~el 355 (1072)
T KOG0979|consen 326 KLESLKKAAEKRQKRIEKAKKMILDAQAEL 355 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 555555555555555555555555555443
No 88
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=96.94 E-value=1.6 Score=54.55 Aligned_cols=40 Identities=10% Similarity=0.223 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHH
Q 002520 741 VDDIDGSIRNMEHRIAHETLPLKEEKQIIREIKQLKQRREQ 781 (913)
Q Consensus 741 VEELQeEIkeLE~QIQheSLsLqEEKQlIrEISQLEkeRKd 781 (913)
..+|+.....++..++.. .......++...+..|...+..
T Consensus 602 ~~~l~~~~~~l~~~~~~~-~~~~~~~e~~~~~~~l~~~~~~ 641 (908)
T COG0419 602 LKELEERLSQLEELLQSL-ELSEAENELEEAEEELESELEK 641 (908)
T ss_pred HHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555554444 2222222344444444444443
No 89
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=96.91 E-value=0.099 Score=58.04 Aligned_cols=22 Identities=9% Similarity=0.037 Sum_probs=13.8
Q ss_pred CCCHHHHHHHHHHHHHHHhhcC
Q 002520 738 AISVDDIDGSIRNMEHRIAHET 759 (913)
Q Consensus 738 ~KSVEELQeEIkeLE~QIQheS 759 (913)
.++-.-++++=...+|++++..
T Consensus 122 vK~~aRl~ak~~WYeWR~klle 143 (312)
T smart00787 122 VKTFARLEAKKMWYEWRMKLLE 143 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666777766655
No 90
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=96.90 E-value=1.2 Score=51.01 Aligned_cols=58 Identities=12% Similarity=0.232 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 668 QIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEI 725 (913)
Q Consensus 668 KIdeLekEIEeL~kqRdEInaELqeLReERdELeSeLKkLVeEIkrLReEInEKrKEI 725 (913)
+++++..++..++.++.....+....+.+|...+++|.+.+.+....+.++...++++
T Consensus 75 qlddi~~qlr~~rtel~~a~~~k~~~e~er~~~~~El~~~r~e~~~v~~~~~~a~~n~ 132 (499)
T COG4372 75 QLDDIRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNL 132 (499)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555566666666666666555555555555444444
No 91
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=96.87 E-value=0.24 Score=59.36 Aligned_cols=95 Identities=9% Similarity=0.219 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CCCHHH
Q 002520 665 LREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKN-AISVDD 743 (913)
Q Consensus 665 LKaKIdeLekEIEeL~kqRdEInaELqeLReERdELeSeLKkLVeEIkrLReEInEKrKEIesLQSeLsKLrS-~KSVEE 743 (913)
.+.+....+.+++.+..+++.+...+..+....+.+...++.+..++.+.+.+...+.+++.-......-+.. -..++.
T Consensus 319 ~~~~~~~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni~k 398 (594)
T PF05667_consen 319 EEDEQEEQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPDAEENIAK 398 (594)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 3344444455555555555555555555566666666656666555555555555555555422222222222 145566
Q ss_pred HHHHHHHHHHHHhhcC
Q 002520 744 IDGSIRNMEHRIAHET 759 (913)
Q Consensus 744 LQeEIkeLE~QIQheS 759 (913)
|+..+..-..++.++.
T Consensus 399 L~~~v~~s~~rl~~L~ 414 (594)
T PF05667_consen 399 LQALVEASEQRLVELA 414 (594)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6665555555544443
No 92
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=96.83 E-value=0.31 Score=55.95 Aligned_cols=80 Identities=20% Similarity=0.351 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc------CCCCHHHHHHHHHHHHHHHhhcCCCcHH----HHHHHHH
Q 002520 702 EKLEAAISDERSARESLKSKRQEIDSVQSRINMMK------NAISVDDIDGSIRNMEHRIAHETLPLKE----EKQIIRE 771 (913)
Q Consensus 702 SeLKkLVeEIkrLReEInEKrKEIesLQSeLsKLr------S~KSVEELQeEIkeLE~QIQheSLsLqE----EKQlIrE 771 (913)
.+|..+..++..++.++...+..++.|+..+.... +......+..++..++.++......+.+ =+.+.++
T Consensus 204 ~~l~~l~~~l~~~~~~l~~~~a~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~l~~~y~~~hP~v~~l~~q 283 (498)
T TIGR03007 204 SEISEAQEELEAARLELNEAIAQRDALKRQLGGEEPVLLAGSSVANSELDGRIEALEKQLDALRLRYTDKHPDVIATKRE 283 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCcccccCCCchHHHHHHHHHHHHHHHHHhcccChHHHHHHHH
Confidence 33444444555555555555555555555443211 1123456666777777666665521111 1335666
Q ss_pred HHHHHHHHHH
Q 002520 772 IKQLKQRREQ 781 (913)
Q Consensus 772 ISQLEkeRKd 781 (913)
|..|+..+..
T Consensus 284 i~~l~~~l~~ 293 (498)
T TIGR03007 284 IAQLEEQKEE 293 (498)
T ss_pred HHHHHHHHHh
Confidence 6666666544
No 93
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=96.68 E-value=0.89 Score=56.96 Aligned_cols=36 Identities=8% Similarity=0.135 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 682 SRDAIRDDIQTIRASYKEYAEKLEAAISDERSARES 717 (913)
Q Consensus 682 qRdEInaELqeLReERdELeSeLKkLVeEIkrLReE 717 (913)
++-+++.++..++..|+-.+.++..+..++..+...
T Consensus 302 eiiqlkqkl~dm~~erdtdr~kteeL~eEnstLq~q 337 (1195)
T KOG4643|consen 302 EIIQLKQKLDDMRSERDTDRHKTEELHEENSTLQVQ 337 (1195)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 344555566666666666666666666555554444
No 94
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=96.68 E-value=0.62 Score=51.38 Aligned_cols=22 Identities=9% Similarity=0.049 Sum_probs=11.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 002520 663 ENLREQIKAAQSKVDEKTRSRD 684 (913)
Q Consensus 663 PeLKaKIdeLekEIEeL~kqRd 684 (913)
+.+..++..++.++..+..++.
T Consensus 77 ~~~~~~l~~l~~~~~~l~a~~~ 98 (423)
T TIGR01843 77 TDVEADAAELESQVLRLEAEVA 98 (423)
T ss_pred chhhhHHHHHHHHHHHHHHHHH
Confidence 4455555555555555544443
No 95
>PRK09039 hypothetical protein; Validated
Probab=96.66 E-value=0.42 Score=53.62 Aligned_cols=48 Identities=13% Similarity=0.169 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 665 LREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDER 712 (913)
Q Consensus 665 LKaKIdeLekEIEeL~kqRdEInaELqeLReERdELeSeLKkLVeEIk 712 (913)
|..+|...++++..+..++.++-..+.--+.....+..+|..+..++.
T Consensus 44 Ls~~i~~~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~ 91 (343)
T PRK09039 44 LSREISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLS 91 (343)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 455555555555555555555444444444444444444444443333
No 96
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=96.64 E-value=0.93 Score=53.62 Aligned_cols=44 Identities=7% Similarity=-0.030 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCHHHHHHHH
Q 002520 859 YKHWQSLKKQAYDKNQHFWKYKDDTKQANDLASKGDREALQHLC 902 (913)
Q Consensus 859 yekIkELRkQ~DeLNsEFyq~Rr~l~kARdLAa~~dv~eLqelc 902 (913)
-..+..+..++..+...|.++-..+.++|.-++..-.+.+...+
T Consensus 345 ~~~le~L~~el~~l~~~l~~~a~~Ls~~R~~~a~~l~~~v~~~l 388 (563)
T TIGR00634 345 DESLEALEEEVDKLEEELDKAAVALSLIRRKAAERLAKRVEQEL 388 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677888888888888888888888888877754444444433
No 97
>PF13514 AAA_27: AAA domain
Probab=96.58 E-value=1.1 Score=57.00 Aligned_cols=12 Identities=17% Similarity=0.426 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHH
Q 002520 768 IIREIKQLKQRR 779 (913)
Q Consensus 768 lIrEISQLEkeR 779 (913)
+..++..++..+
T Consensus 859 l~~~~~~~~~~l 870 (1111)
T PF13514_consen 859 LREELEDLERQL 870 (1111)
T ss_pred HHHHHHHHHHHH
Confidence 444444444444
No 98
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=96.57 E-value=1.5 Score=57.13 Aligned_cols=41 Identities=10% Similarity=0.218 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 665 LREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLE 705 (913)
Q Consensus 665 LKaKIdeLekEIEeL~kqRdEInaELqeLReERdELeSeLK 705 (913)
=..+|..|+.+|..+..++..+...+..+...+..+..+.+
T Consensus 740 R~~ri~el~~~IaeL~~~i~~l~~~l~~l~~r~~~L~~e~~ 780 (1353)
T TIGR02680 740 RLRRIAELDARLAAVDDELAELARELRALGARQRALADELA 780 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34578888888888888888888888888888887777643
No 99
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=96.55 E-value=1.1 Score=57.70 Aligned_cols=69 Identities=19% Similarity=0.233 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 800 DQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAY 870 (913)
Q Consensus 800 enIqEQIKELKKEIDELReKIkkLekELEeLkkKIeEAqaELdELqeElrAaeEeRQEAyekIkELRkQ~D 870 (913)
-.+..+++++..++..+..++..++ +...+.++..+...+..+..+...+.-...+.-..+..++.++.
T Consensus 1011 ~~l~~q~~e~~re~~~ld~Qi~~~~--~~~~~ee~~~L~~~~~~l~se~~~~lg~~ke~e~~i~~~k~eL~ 1079 (1294)
T KOG0962|consen 1011 RNLERKLKELERELSELDKQILEAD--IKSVKEERVKLEEEREKLSSEKNLLLGEMKQYESQIKKLKQELR 1079 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHhh
Confidence 3455666666666666666665555 44444444455555555555555555555555555555555554
No 100
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=96.53 E-value=2.4 Score=51.87 Aligned_cols=62 Identities=10% Similarity=0.111 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 811 KEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDK 872 (913)
Q Consensus 811 KEIDELReKIkkLekELEeLkkKIeEAqaELdELqeElrAaeEeRQEAyekIkELRkQ~DeL 872 (913)
..+..++.++.++...++.|+-+.++..++|..++.+..+...++.....++..+-.+...+
T Consensus 552 ~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L 613 (698)
T KOG0978|consen 552 QSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERL 613 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555555555555555555555555544444444444333333333333333
No 101
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=96.51 E-value=0.72 Score=52.97 Aligned_cols=31 Identities=16% Similarity=0.219 Sum_probs=19.7
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 661 DDENLREQIKAAQSKVDEKTRSRDAIRDDIQ 691 (913)
Q Consensus 661 dDPeLKaKIdeLekEIEeL~kqRdEInaELq 691 (913)
++..+.+++..++.++..+..++..+.+.+.
T Consensus 91 d~~~~~~~~~~~~~~~~~~~~~~~rL~a~~~ 121 (457)
T TIGR01000 91 DNGNEENQKQLLEQQLDNLKDQKKSLDTLKQ 121 (457)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466777777777776666666665555544
No 102
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=96.44 E-value=0.41 Score=47.73 Aligned_cols=40 Identities=20% Similarity=0.263 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 691 QTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQS 730 (913)
Q Consensus 691 qeLReERdELeSeLKkLVeEIkrLReEInEKrKEIesLQS 730 (913)
..+|.+.+.+..+...+.++++.+......+..+|.+|+.
T Consensus 3 ~~lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~ 42 (143)
T PF12718_consen 3 QALKLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQK 42 (143)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444443
No 103
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.43 E-value=2.8 Score=48.99 Aligned_cols=101 Identities=16% Similarity=0.167 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH----HHHHHHHHHHHHHHHHHHH
Q 002520 801 QIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAA---DEI----RQEAYKHWQSLKKQAYDKN 873 (913)
Q Consensus 801 nIqEQIKELKKEIDELReKIkkLekELEeLkkKIeEAqaELdELqeElrAa---eEe----RQEAyekIkELRkQ~DeLN 873 (913)
....+|+++-..+..++..|.++-.+..+|+++.+...+.|+.-.+=-+.. ..+ ...+|.-+..+-..+.++-
T Consensus 386 ~ytqrikEi~gniRKq~~DI~Kil~etreLqkq~ns~se~L~Rsfavtdellf~sakhddhvR~aykllt~iH~nc~ei~ 465 (521)
T KOG1937|consen 386 VYTQRIKEIDGNIRKQEQDIVKILEETRELQKQENSESEALNRSFAVTDELLFMSAKHDDHVRLAYKLLTRIHLNCMEIL 465 (521)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHH
Confidence 444566666666666666666666666666666666666655322111111 111 1245666666666666666
Q ss_pred HHHHHHHHHHHHHHHhhhcCCHHHHHHH
Q 002520 874 QHFWKYKDDTKQANDLASKGDREALQHL 901 (913)
Q Consensus 874 sEFyq~Rr~l~kARdLAa~~dv~eLqel 901 (913)
.-....=+..++.|+|-.+=..+.++.+
T Consensus 466 E~i~~tg~~~revrdlE~qI~~E~~k~~ 493 (521)
T KOG1937|consen 466 EMIRETGALKREVRDLESQIYVEEQKQY 493 (521)
T ss_pred HHHHHcchHHHHHHHHHHHHhHHHHHHH
Confidence 6666777788899999887666665544
No 104
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.38 E-value=1 Score=56.79 Aligned_cols=80 Identities=11% Similarity=0.135 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 807 KFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKDDTKQA 886 (913)
Q Consensus 807 KELKKEIDELReKIkkLekELEeLkkKIeEAqaELdELqeElrAaeEeRQEAyekIkELRkQ~DeLNsEFyq~Rr~l~kA 886 (913)
+-......++.++++.++..++.+...+..+...++++.+....+....+..-..+..+..+-.++|.+|...+.-+.-|
T Consensus 398 d~~~~~~~elE~r~k~l~~sver~~~~~~~L~~~i~s~~~~~~e~~~d~~~l~~~~~~~~~~~~e~n~eL~~~~~ql~da 477 (1141)
T KOG0018|consen 398 DHELERRAELEARIKQLKESVERLDKRRNKLAAKITSLSRSYEELKHDLDSLESLVSSAEEEPYELNEELVEVLDQLLDA 477 (1141)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhh
Confidence 33344455666666666666666666666666666666666666666666555555666666666666666666555444
No 105
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=96.36 E-value=1.8 Score=48.28 Aligned_cols=126 Identities=17% Similarity=0.223 Sum_probs=61.2
Q ss_pred CHHHHHHHHHHHHHHHhhcC--C-CcHHHHH-HHHHHHHHHHHHHHhhhcccchhHHHHHHHhHHHHHHHHHHHHHHHHH
Q 002520 740 SVDDIDGSIRNMEHRIAHET--L-PLKEEKQ-IIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKFLRKEADS 815 (913)
Q Consensus 740 SVEELQeEIkeLE~QIQheS--L-sLqEEKQ-lIrEISQLEkeRKdV~snIs~kakIEqSLeEKenIqEQIKELKKEIDE 815 (913)
..+.++..-..|..++.-.. + .|.+... +..++.+|+.....+...-. +....++++|+....++..
T Consensus 152 ~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~---------~eL~~lk~~l~~~~~ei~~ 222 (312)
T smart00787 152 NLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDP---------TELDRAKEKLKKLLQEIMI 222 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCH---------HHHHHHHHHHHHHHHHHHH
Confidence 34444444444444433333 2 3444444 66666666655554332221 1122333444444444445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Q 002520 816 LRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEA----YKHWQSLKKQAYDKNQ 874 (913)
Q Consensus 816 LReKIkkLekELEeLkkKIeEAqaELdELqeElrAaeEeRQEA----yekIkELRkQ~DeLNs 874 (913)
.+.++..+..++..+...+++..++..++..+..+++..+.+- ...+..|+.+++.+..
T Consensus 223 ~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t~~Ei~~Lk~~~~~Le~ 285 (312)
T smart00787 223 KVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFTFKEIEKLKEQLKLLQS 285 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence 5555555555555555555555555555555555555544432 5566666666665543
No 106
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=96.36 E-value=0.49 Score=47.24 Aligned_cols=63 Identities=6% Similarity=0.254 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 670 KAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRI 732 (913)
Q Consensus 670 deLekEIEeL~kqRdEInaELqeLReERdELeSeLKkLVeEIkrLReEInEKrKEIesLQSeL 732 (913)
..++.+.+.+..+.+.+.+.+..+..+...+..+|..+...+..+..++.....++..+...+
T Consensus 3 ~~lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~l 65 (143)
T PF12718_consen 3 QALKLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKL 65 (143)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444444444444444444444444333
No 107
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=96.35 E-value=4.5 Score=50.58 Aligned_cols=18 Identities=17% Similarity=0.486 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHhhc
Q 002520 741 VDDIDGSIRNMEHRIAHE 758 (913)
Q Consensus 741 VEELQeEIkeLE~QIQhe 758 (913)
...++.+++.|+..++..
T Consensus 554 ~~~l~~e~~~le~~~~~l 571 (908)
T COG0419 554 LQQLKEELRQLEDRLQEL 571 (908)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444444444333
No 108
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=96.35 E-value=2.3 Score=54.51 Aligned_cols=181 Identities=15% Similarity=0.213 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHH
Q 002520 665 LREQIKAAQSKVDEKTRSRDAIR-DDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKNAISVDD 743 (913)
Q Consensus 665 LKaKIdeLekEIEeL~kqRdEIn-aELqeLReERdELeSeLKkLVeEIkrLReEInEKrKEIesLQSeLsKLrS~KSVEE 743 (913)
++....+|+..+..++.++.++. ....-+..+..++..++....++++.+...+..++.+++.++....... .+.+.
T Consensus 463 ~~~~~keL~e~i~~lk~~~~el~~~q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~~--~~~~k 540 (1317)
T KOG0612|consen 463 LEEMDKELEETIEKLKSEESELQREQKALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNAA--DSLEK 540 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhh
Confidence 44444555555555555555544 2333345566666666777777777777777777777777765554443 45555
Q ss_pred HHHHHHHHHHHHhhcCCCcHHHHH-------HHHHHHHHHHHHHHhhhcccchhHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 002520 744 IDGSIRNMEHRIAHETLPLKEEKQ-------IIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKFLRKEADSL 816 (913)
Q Consensus 744 LQeEIkeLE~QIQheSLsLqEEKQ-------lIrEISQLEkeRKdV~snIs~kakIEqSLeEKenIqEQIKELKKEIDEL 816 (913)
+....++|+.+....+....+.++ ..+.|++++...+.+...+. .....+..+...-+.++......
T Consensus 541 v~~~rk~le~~~~d~~~e~~~~~kl~~~~~e~~~~iq~~~e~~~~~~d~l~------~le~~k~~ls~~~~~~~~~~e~~ 614 (1317)
T KOG0612|consen 541 VNSLRKQLEEAELDMRAESEDAGKLRKHSKELSKQIQQELEENRDLEDKLS------LLEESKSKLSKENKKLRSELEKE 614 (1317)
T ss_pred HHHHHHHHHHhhhhhhhhHHHHhhHhhhhhhhhHHHHHHhhccccHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555554444433333333 34444444442222221111 11111122222233334444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 817 RENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADE 853 (913)
Q Consensus 817 ReKIkkLekELEeLkkKIeEAqaELdELqeElrAaeE 853 (913)
+.....+...+.+++.++..++..+.....+...+..
T Consensus 615 ~~~~~~~~e~~~~l~~~i~sL~~~~~~~~~~l~k~~e 651 (1317)
T KOG0612|consen 615 RRQRTEISEIIAELKEEISSLEETLKAGKKELLKVEE 651 (1317)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHH
Confidence 4444445555555665555555555555555554444
No 109
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=96.34 E-value=1.7 Score=45.50 Aligned_cols=33 Identities=18% Similarity=0.217 Sum_probs=16.2
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 791 EVQLAFDQKDQIEEKMKFLRKEADSLRENVIKA 823 (913)
Q Consensus 791 kIEqSLeEKenIqEQIKELKKEIDELReKIkkL 823 (913)
-++..|.+|..+......+.+.+...+.++.++
T Consensus 102 Svk~~~~~R~~~~~~~~~~~~~L~k~~~~~~Kl 134 (216)
T cd07627 102 SVRAAFAQRQKLWQYWQSAESELSKKKAQLEKL 134 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555544444455555555555444444
No 110
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=96.31 E-value=3.5 Score=51.49 Aligned_cols=19 Identities=16% Similarity=0.246 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHhhcC
Q 002520 741 VDDIDGSIRNMEHRIAHET 759 (913)
Q Consensus 741 VEELQeEIkeLE~QIQheS 759 (913)
++++...+-..+.+.....
T Consensus 412 ~ee~e~~~l~~e~ry~klk 430 (980)
T KOG0980|consen 412 VEEAENKALAAENRYEKLK 430 (980)
T ss_pred HHhHHHHHHHHHHHHHHHH
Confidence 5666666665555555544
No 111
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=96.29 E-value=1.2 Score=54.03 Aligned_cols=33 Identities=12% Similarity=0.153 Sum_probs=13.4
Q ss_pred hhhhhcccccccc--CcceeeccCCCCCchHHHHHH
Q 002520 636 ASESRNIGVEVVK--QPFYFLVKVPRYDDENLREQI 669 (913)
Q Consensus 636 aVEe~kE~Ld~LR--r~fYf~Vr~rRLdDPeLKaKI 669 (913)
.+......|.+-+ .+.++-++|.. .||.+-+.|
T Consensus 138 ~~~~l~~~L~V~~~~~s~ii~Is~~~-~dP~~Aa~i 172 (754)
T TIGR01005 138 VLKKMREKLNVFGVEKTRIIAIEFRS-EDPKLAAAI 172 (754)
T ss_pred HHHHHHhcceEEecCccEEEEEEEec-CCHHHHHHH
Confidence 3333444444433 33332344444 445444444
No 112
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=96.29 E-value=2.3 Score=47.36 Aligned_cols=117 Identities=11% Similarity=0.253 Sum_probs=62.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH----HHHHHHhc
Q 002520 663 ENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDE---RSARESLKSKRQEIDS----VQSRINMM 735 (913)
Q Consensus 663 PeLKaKIdeLekEIEeL~kqRdEInaELqeLReERdELeSeLKkLVeEI---krLReEInEKrKEIes----LQSeLsKL 735 (913)
..|-.++.++..+...+..+..........+..+++.+.+++.+++... ..+-.++....+.+.. +...-...
T Consensus 25 ~~L~kk~~ell~e~k~~~k~~~~~~Kk~~~l~kek~~l~~E~~k~~~~k~KLE~LCRELQk~Nk~lkeE~~~~~~eee~k 104 (309)
T PF09728_consen 25 EALCKKYAELLEEMKRLQKQLKKLQKKQEQLQKEKDQLQSELSKAILAKSKLESLCRELQKQNKKLKEESKRRAREEEEK 104 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567777777777777777777777777777777888877777765443 3333333333333321 11111111
Q ss_pred cCCCCHHHHHHHHHHHHHHHhhcC---CCcHHHHH-HHHHHHHHHHHHH
Q 002520 736 KNAISVDDIDGSIRNMEHRIAHET---LPLKEEKQ-IIREIKQLKQRRE 780 (913)
Q Consensus 736 rS~KSVEELQeEIkeLE~QIQheS---LsLqEEKQ-lIrEISQLEkeRK 780 (913)
+ ..-.+-++..|..+..+|.... ..+.+|-. +...++.|-.+..
T Consensus 105 R-~el~~kFq~~L~dIq~~~ee~~~~~~k~~~eN~~L~eKlK~l~eQye 152 (309)
T PF09728_consen 105 R-KELSEKFQATLKDIQAQMEEQSERNIKLREENEELREKLKSLIEQYE 152 (309)
T ss_pred H-HHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1223344444555555554444 35555555 5444444444443
No 113
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=96.29 E-value=0.94 Score=47.45 Aligned_cols=14 Identities=14% Similarity=0.316 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHhh
Q 002520 744 IDGSIRNMEHRIAH 757 (913)
Q Consensus 744 LQeEIkeLE~QIQh 757 (913)
.+.++..+...+++
T Consensus 94 ~~~el~k~~~~l~~ 107 (194)
T PF15619_consen 94 KDEELLKTKDELKH 107 (194)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 114
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=96.27 E-value=1.7 Score=44.84 Aligned_cols=8 Identities=0% Similarity=0.156 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 002520 668 QIKAAQSK 675 (913)
Q Consensus 668 KIdeLekE 675 (913)
.++.++.+
T Consensus 32 ~~~~le~~ 39 (236)
T PF09325_consen 32 YVDKLEEQ 39 (236)
T ss_pred HHHHHHHH
Confidence 33333333
No 115
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=96.18 E-value=2.4 Score=45.63 Aligned_cols=51 Identities=10% Similarity=0.053 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 002520 829 AVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQ-SLKKQAYDKNQHFWKY 879 (913)
Q Consensus 829 eLkkKIeEAqaELdELqeElrAaeEeRQEAyekIk-ELRkQ~DeLNsEFyq~ 879 (913)
.++.++.+++.+....+.+++.+.+.+...+..+. +....|......|.+.
T Consensus 163 ~~~~ev~~~e~~~~~a~~~fe~Is~~~k~El~rFe~er~~dfk~~l~~fles 214 (234)
T cd07664 163 QAKDEIKEWEAKVQQGERDFEQISKTIRKEVGRFEKERVKDFKTVIIKYLES 214 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444444444444444444444442 2233344444444433
No 116
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=96.18 E-value=2.5 Score=50.32 Aligned_cols=140 Identities=14% Similarity=0.207 Sum_probs=85.5
Q ss_pred CcHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 761 PLKEEKQIIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEK 840 (913)
Q Consensus 761 sLqEEKQlIrEISQLEkeRKdV~snIs~kakIEqSLeEKenIqEQIKELKKEIDELReKIkkLekELEeLkkKIeEAqaE 840 (913)
.+.--+++.++|+.|+.....+..++..+. .....++..++.+.+.+..+.++..++...+..|.+.=-+|+..
T Consensus 345 e~~~vr~~e~eL~el~~~~~~i~~~~~~~~------~~yS~lq~~l~~~~~~l~~i~~~q~~~~e~L~~LrkdEl~Are~ 418 (570)
T COG4477 345 ELGSVRKFEKELKELESVLDEILENIEAQE------VAYSELQDNLEEIEKALTDIEDEQEKVQEHLTSLRKDELEAREN 418 (570)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccc------ccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 455567788888888888888766665332 12334556666666666666666666666677777777777778
Q ss_pred HHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc--CCHHHHHHHHHHHH
Q 002520 841 LKRLLGQFKAADEIRQEA---------YKHWQSLKKQAYDKNQHFWKYKDDTKQANDLASK--GDREALQHLCVNQV 906 (913)
Q Consensus 841 LdELqeElrAaeEeRQEA---------yekIkELRkQ~DeLNsEFyq~Rr~l~kARdLAa~--~dv~eLqelc~~QV 906 (913)
+..++.++....+.+.+. ...+...-++...++..|-+-+-.+.++..+... ++...|......=|
T Consensus 419 l~~~~~~l~eikR~mek~nLPGlPe~~l~l~~~~~~~i~~l~~eLse~pinm~~v~~~v~~a~~~m~~l~~~t~e~v 495 (570)
T COG4477 419 LERLKSKLHEIKRYMEKSNLPGLPETFLSLFFTAGHEIQDLMKELSEVPINMEAVSALVDIATEDMNTLEDETEEVV 495 (570)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHhhhhHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 887777777777777663 2333333444555555555555555555554432 44444544444333
No 117
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=96.16 E-value=2.3 Score=45.34 Aligned_cols=17 Identities=24% Similarity=0.538 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHhh
Q 002520 741 VDDIDGSIRNMEHRIAH 757 (913)
Q Consensus 741 VEELQeEIkeLE~QIQh 757 (913)
++.|..++..|+..++.
T Consensus 94 l~~L~~ri~~L~~~i~e 110 (247)
T PF06705_consen 94 LDSLNDRIEALEEEIQE 110 (247)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333344444333333
No 118
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=96.16 E-value=3.1 Score=46.85 Aligned_cols=16 Identities=13% Similarity=0.152 Sum_probs=11.8
Q ss_pred CHHHHHHHHHHHHHhh
Q 002520 894 DREALQHLCVNQVRSR 909 (913)
Q Consensus 894 dv~eLqelc~~QVEkf 909 (913)
.+.+|+.||.+=.|.+
T Consensus 273 s~sdLksl~~aLle~i 288 (319)
T PF09789_consen 273 SISDLKSLATALLETI 288 (319)
T ss_pred hHHHHHHHHHHHHHHh
Confidence 5888888888766543
No 119
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=96.13 E-value=0.54 Score=57.49 Aligned_cols=57 Identities=12% Similarity=0.246 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 674 SKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQS 730 (913)
Q Consensus 674 kEIEeL~kqRdEInaELqeLReERdELeSeLKkLVeEIkrLReEInEKrKEIesLQS 730 (913)
.+|+++++++..+..+-..+...+.+.+.+|......+......+..+..+++.|+.
T Consensus 265 ~EiqKL~qQL~qve~EK~~L~~~L~e~Q~qLe~a~~als~q~eki~~L~e~l~aL~~ 321 (717)
T PF09730_consen 265 SEIQKLKQQLLQVEREKSSLLSNLQESQKQLEHAQGALSEQQEKINRLTEQLDALRK 321 (717)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345555666666666656666666666666666666666656666666666655544
No 120
>PRK11281 hypothetical protein; Provisional
Probab=96.12 E-value=1.8 Score=55.52 Aligned_cols=38 Identities=8% Similarity=0.177 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHhhcCC---CcHHHHH--HHHHHHHHHHH
Q 002520 741 VDDIDGSIRNMEHRIAHETL---PLKEEKQ--IIREIKQLKQR 778 (913)
Q Consensus 741 VEELQeEIkeLE~QIQheSL---sLqEEKQ--lIrEISQLEke 778 (913)
..+.+.++++++.++..... +|.+.++ +..|...|+.+
T Consensus 165 lsea~~RlqeI~~~L~~~~~~~~~l~~~~~~~l~ae~~~l~~~ 207 (1113)
T PRK11281 165 LYANSQRLQQIRNLLKGGKVGGKALRPSQRVLLQAEQALLNAQ 207 (1113)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCcCCHHHHHHHHHHHHHHHHH
Confidence 36666677777777766541 3444433 44444444433
No 121
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=96.11 E-value=3.2 Score=46.53 Aligned_cols=177 Identities=12% Similarity=0.195 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h---------c---------cCCCCHHHHHHHHHHHHHHH
Q 002520 695 ASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRIN-M---------M---------KNAISVDDIDGSIRNMEHRI 755 (913)
Q Consensus 695 eERdELeSeLKkLVeEIkrLReEInEKrKEIesLQSeLs-K---------L---------rS~KSVEELQeEIkeLE~QI 755 (913)
.+...+..+|......+.+++.++.-+..-++-+...-. . + .++-..+-||.+++.|+..-
T Consensus 97 ~~~~~le~~L~~~~e~v~qLrHeL~~kdeLL~~ys~~~ee~~~~~~~~~~~~~~~~~~~~~~~~~le~Lq~Klk~LEeEN 176 (306)
T PF04849_consen 97 ERNEALEEQLGAALEQVEQLRHELSMKDELLQIYSNDDEESEPESSESTPLRRNESSLSSQKCIQLEALQEKLKSLEEEN 176 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHhhhcccccCCCccccccccccccccchhHHHHHHHHHHHHHHH
Confidence 444555555666666666666666665554432221110 0 0 01234688888888887755
Q ss_pred hhcCC---CcHHH------HH--HHHHHHHHHHHHHHhhhcccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 756 AHETL---PLKEE------KQ--IIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKFLRKEADSLRENVIKAE 824 (913)
Q Consensus 756 QheSL---sLqEE------KQ--lIrEISQLEkeRKdV~snIs~kakIEqSLeEKenIqEQIKELKKEIDELReKIkkLe 824 (913)
.+++. .|..| |+ ++.++ =+++..++.. ...|.+.+.....+....+++|..+-
T Consensus 177 ~~LR~Ea~~L~~et~~~EekEqqLv~dc---v~QL~~An~q-------------ia~LseELa~k~Ee~~rQQEEIt~Ll 240 (306)
T PF04849_consen 177 EQLRSEASQLKTETDTYEEKEQQLVLDC---VKQLSEANQQ-------------IASLSEELARKTEENRRQQEEITSLL 240 (306)
T ss_pred HHHHHHHHHhhHHHhhccHHHHHHHHHH---HHHhhhcchh-------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54441 22211 11 22111 1222222222 22344444445555555666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 825 AATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKDDTKQAN 887 (913)
Q Consensus 825 kELEeLkkKIeEAqaELdELqeElrAaeEeRQEAyekIkELRkQ~DeLNsEFyq~Rr~l~kAR 887 (913)
.++-.++.++...-.+-.+++..+.+.....+..-..+.++++++.+...-|...+..+++.|
T Consensus 241 sqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~EaQEElk~lR 303 (306)
T PF04849_consen 241 SQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAMLHEAQEELKTLR 303 (306)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 666666666666666666666666666666666666677777777777777777776666654
No 122
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.10 E-value=3.3 Score=49.53 Aligned_cols=42 Identities=17% Similarity=0.235 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 839 EKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYK 880 (913)
Q Consensus 839 aELdELqeElrAaeEeRQEAyekIkELRkQ~DeLNsEFyq~R 880 (913)
..+.+...-..-++.++.++...++.-|.+...+..++-+|+
T Consensus 215 ~q~ee~~~Lk~IAekQlEEALeTlq~EReqk~alkkEL~q~~ 256 (772)
T KOG0999|consen 215 SQLEEAIRLKEIAEKQLEEALETLQQEREQKNALKKELSQYR 256 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhc
Confidence 333333333344455666666777766777666666665554
No 123
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=96.10 E-value=0.63 Score=55.75 Aligned_cols=22 Identities=9% Similarity=0.289 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 002520 711 ERSARESLKSKRQEIDSVQSRI 732 (913)
Q Consensus 711 IkrLReEInEKrKEIesLQSeL 732 (913)
+...+..|-.++.++..|+.++
T Consensus 244 Le~aq~ri~~lE~e~e~L~~ql 265 (629)
T KOG0963|consen 244 LEDAQQRIVFLEREVEQLREQL 265 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444444444433
No 124
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=96.09 E-value=4.4 Score=49.74 Aligned_cols=29 Identities=7% Similarity=0.236 Sum_probs=15.8
Q ss_pred HHHHHHHhccCCCCHHHHHHHHHHHHHHHhh
Q 002520 727 SVQSRINMMKNAISVDDIDGSIRNMEHRIAH 757 (913)
Q Consensus 727 sLQSeLsKLrS~KSVEELQeEIkeLE~QIQh 757 (913)
.|.+++...+ ...+++|.+|.+|=.+++.
T Consensus 451 ~ll~e~~t~g--sA~ed~Qeqn~kL~~el~e 479 (698)
T KOG0978|consen 451 CLLSEMETIG--SAFEDMQEQNQKLLQELRE 479 (698)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 3444444443 5667777776666554443
No 125
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=96.09 E-value=0.74 Score=52.91 Aligned_cols=43 Identities=14% Similarity=0.203 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhhc
Q 002520 714 ARESLKSKRQEIDSVQSRINMMKNAISVDDIDGSIRNMEHRIAHE 758 (913)
Q Consensus 714 LReEInEKrKEIesLQSeLsKLrS~KSVEELQeEIkeLE~QIQhe 758 (913)
++..+.+++.++..+...... +...+-+++++|..+..+++..
T Consensus 252 l~~~l~~l~~~l~~l~~~y~~--~hP~v~~l~~qi~~l~~~l~~~ 294 (498)
T TIGR03007 252 LDGRIEALEKQLDALRLRYTD--KHPDVIATKREIAQLEEQKEEE 294 (498)
T ss_pred hHHHHHHHHHHHHHHHHHhcc--cChHHHHHHHHHHHHHHHHHhh
Confidence 344444455554444432221 2356677778888877776554
No 126
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=96.08 E-value=7.3 Score=50.31 Aligned_cols=60 Identities=5% Similarity=0.132 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhhcC
Q 002520 698 KEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKNAISVDDIDGSIRNMEHRIAHET 759 (913)
Q Consensus 698 dELeSeLKkLVeEIkrLReEInEKrKEIesLQSeLsKLrS~KSVEELQeEIkeLE~QIQheS 759 (913)
.+++.++....+++..++..+.....++..+...++..+ ++..+.+.++++++.+++...
T Consensus 105 ~~Leq~l~~~~~~L~~~q~~l~~~~~~~~~~~~~l~~~p--q~~~~~~~~l~~i~~~L~~~~ 164 (1109)
T PRK10929 105 DALEQEILQVSSQLLEKSRQAQQEQDRAREISDSLSQLP--QQQTEARRQLNEIERRLQTLG 164 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhch--hhHHHHHHHHHHHHHHHhCCC
Confidence 444444444444444444444444444444444444444 455788888888888877754
No 127
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=96.03 E-value=0.49 Score=57.93 Aligned_cols=30 Identities=20% Similarity=0.153 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 846 GQFKAADEIRQEAYKHWQSLKKQAYDKNQH 875 (913)
Q Consensus 846 eElrAaeEeRQEAyekIkELRkQ~DeLNsE 875 (913)
.+.+.+.+.+.+...+|.+++++.+.+++.
T Consensus 685 ~Q~~~I~~iL~~~~~~I~~~v~~ik~i~~~ 714 (717)
T PF10168_consen 685 SQKRTIKEILKQQGEEIDELVKQIKNIKKI 714 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344445555555666666666666665553
No 128
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.96 E-value=1.5 Score=54.00 Aligned_cols=25 Identities=28% Similarity=0.288 Sum_probs=17.1
Q ss_pred CCccchhHHhhhccccccCCCCCch
Q 002520 482 KDDHRSKELEENMETEFTGEESDDL 506 (913)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (913)
.++|++.+|-+---+--||...++|
T Consensus 455 dn~~~kEeLlrV~l~~~~gn~p~tl 479 (970)
T KOG0946|consen 455 DNDQLKEELLRVPLAVDTGNDPDTL 479 (970)
T ss_pred HhHHHHHHHHhhhhcccCCCCchHH
Confidence 3567787887776666677665555
No 129
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=95.93 E-value=2.5 Score=44.68 Aligned_cols=18 Identities=22% Similarity=0.386 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 002520 712 RSARESLKSKRQEIDSVQ 729 (913)
Q Consensus 712 krLReEInEKrKEIesLQ 729 (913)
.++-.++-+++++++.++
T Consensus 39 a~L~~e~~~L~~q~~s~Q 56 (193)
T PF14662_consen 39 AQLAEEITDLRKQLKSLQ 56 (193)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333344444444444443
No 130
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=95.85 E-value=1.4 Score=46.37 Aligned_cols=30 Identities=3% Similarity=0.111 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 699 EYAEKLEAAISDERSARESLKSKRQEIDSV 728 (913)
Q Consensus 699 ELeSeLKkLVeEIkrLReEInEKrKEIesL 728 (913)
++.+.+..+-.-.+++..+...+...|..+
T Consensus 5 dL~~~v~dL~~~n~~L~~en~kL~~~ve~~ 34 (193)
T PF14662_consen 5 DLLSCVEDLQLNNQKLADENAKLQRSVETA 34 (193)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 455556666666666666666666655543
No 131
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=95.78 E-value=7.1 Score=47.82 Aligned_cols=40 Identities=25% Similarity=0.478 Sum_probs=23.7
Q ss_pred CHHHHHHHHHHHHHHHhhcC--C-CcHHHHH-HHHHHHHHHHHH
Q 002520 740 SVDDIDGSIRNMEHRIAHET--L-PLKEEKQ-IIREIKQLKQRR 779 (913)
Q Consensus 740 SVEELQeEIkeLE~QIQheS--L-sLqEEKQ-lIrEISQLEkeR 779 (913)
+...-..-+..|+..++... + .|.+||. .+.++++.+...
T Consensus 304 slq~~~~tq~~le~~lq~~~k~~~qlt~eKe~~~Ee~nk~k~~~ 347 (786)
T PF05483_consen 304 SLQESESTQKALEEDLQQATKTLIQLTEEKEAQMEELNKAKAQH 347 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 33333445566666666555 3 7888887 666666655554
No 132
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=95.69 E-value=3.6 Score=43.70 Aligned_cols=96 Identities=15% Similarity=0.200 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHhhhcccchhHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 768 IIREIKQLKQRREQISSSIGEHDEVQLAFD-QKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLG 846 (913)
Q Consensus 768 lIrEISQLEkeRKdV~snIs~kakIEqSLe-EKenIqEQIKELKKEIDELReKIkkLekELEeLkkKIeEAqaELdELqe 846 (913)
....|.+|.-..+.+..++.......+.+. +.+....+|+.+-..+.+-..+...+...+..|.+.++.+..++...+.
T Consensus 107 ~Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLkEaE~rAE~aERsVakLeke~DdlE~kl~~~k~ 186 (205)
T KOG1003|consen 107 AESQSEELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTDKLKEAETRAEFAERRVAKLEKERDDLEEKLEEAKE 186 (205)
T ss_pred HHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHcccHHHHHHhhHHHHH
Confidence 444455555555544444331111111111 2234444555554444444444445555566666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHH
Q 002520 847 QFKAADEIRQEAYKHWQ 863 (913)
Q Consensus 847 ElrAaeEeRQEAyekIk 863 (913)
++..+...++..+..+.
T Consensus 187 ky~~~~~eLD~~~~~L~ 203 (205)
T KOG1003|consen 187 KYEEAKKELDETLQELE 203 (205)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 66666666666555443
No 133
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=95.67 E-value=4.7 Score=44.96 Aligned_cols=62 Identities=11% Similarity=0.145 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 664 NLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEI 725 (913)
Q Consensus 664 eLKaKIdeLekEIEeL~kqRdEInaELqeLReERdELeSeLKkLVeEIkrLReEInEKrKEI 725 (913)
.++.+...+.++.+.+..++........++..-++++..+-+.+.++..+...+-..++.++
T Consensus 47 ~~~Kk~~~l~kek~~l~~E~~k~~~~k~KLE~LCRELQk~Nk~lkeE~~~~~~eee~kR~el 108 (309)
T PF09728_consen 47 KLQKKQEQLQKEKDQLQSELSKAILAKSKLESLCRELQKQNKKLKEESKRRAREEEEKRKEL 108 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555666666666666666666555555544555444
No 134
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=95.65 E-value=4.1 Score=51.46 Aligned_cols=77 Identities=9% Similarity=0.176 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Q 002520 677 DEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDE--RSARESLKSKRQEIDSVQSRINMMKNAISVDDIDGSIRNMEHR 754 (913)
Q Consensus 677 EeL~kqRdEInaELqeLReERdELeSeLKkLVeEI--krLReEInEKrKEIesLQSeLsKLrS~KSVEELQeEIkeLE~Q 754 (913)
+.++.+++++...-+.+-+.+.-+..+|..+++.- ..+..+|-.+.+++..|+.++...+ .-.++|..++..|+-+
T Consensus 260 ~fykdRveelkedN~vLleekeMLeeQLq~lrarse~~tleseiiqlkqkl~dm~~erdtdr--~kteeL~eEnstLq~q 337 (1195)
T KOG4643|consen 260 DFYKDRVEELKEDNRVLLEEKEMLEEQLQKLRARSEGATLESEIIQLKQKLDDMRSERDTDR--HKTEELHEENSTLQVQ 337 (1195)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHhhhhHH--HHHHHHHHHHHHHHHH
Confidence 33445555555555555555555666666665433 4445555555555555555544333 2345555555554444
Q ss_pred H
Q 002520 755 I 755 (913)
Q Consensus 755 I 755 (913)
-
T Consensus 338 ~ 338 (1195)
T KOG4643|consen 338 K 338 (1195)
T ss_pred H
Confidence 3
No 135
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=95.63 E-value=8.1 Score=49.92 Aligned_cols=45 Identities=9% Similarity=0.101 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 813 ADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQE 857 (913)
Q Consensus 813 IDELReKIkkLekELEeLkkKIeEAqaELdELqeElrAaeEeRQE 857 (913)
..++-..+.++...+..+..+...++..+..+.+..+.+.++.+-
T Consensus 267 N~~Ls~~L~~~t~~~n~l~~~~~~~~~~l~~~~q~~~~i~eQi~~ 311 (1109)
T PRK10929 267 NRELSQALNQQAQRMDLIASQQRQAASQTLQVRQALNTLREQSQW 311 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555666666666666666666666666666655555543
No 136
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=95.62 E-value=3.7 Score=43.39 Aligned_cols=89 Identities=12% Similarity=0.142 Sum_probs=42.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Q 002520 791 EVQLAFDQKDQIEEKMKFLRKEADSLRENVIKAE-----AATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQ-S 864 (913)
Q Consensus 791 kIEqSLeEKenIqEQIKELKKEIDELReKIkkLe-----kELEeLkkKIeEAqaELdELqeElrAaeEeRQEAyekIk-E 864 (913)
.+...|.+|..+-.........+...|.++.++. ..+..+..++.+++......+.+++.+.......+..+. +
T Consensus 110 svk~~f~~R~~a~~~~q~a~~~l~kkr~~~~Kl~~~~~~~K~~~~~~ev~~~e~~~~~a~~~fe~is~~~k~El~rF~~e 189 (224)
T cd07623 110 AIKDVFHERVKVWQNWQNAQQTLTKKREAKAKLELSGRTDKLDQAQQEIKEWEAKVDRGQKEFEEISKTIKKEIERFEKN 189 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444442 134455555555555555555555555555555555553 2
Q ss_pred HHHHHHHHHHHHHHH
Q 002520 865 LKKQAYDKNQHFWKY 879 (913)
Q Consensus 865 LRkQ~DeLNsEFyq~ 879 (913)
....|......|.+.
T Consensus 190 rv~dfk~~l~~~le~ 204 (224)
T cd07623 190 RVKDFKDIIIKYLES 204 (224)
T ss_pred HHHHHHHHHHHHHHH
Confidence 233344444444433
No 137
>PRK10869 recombination and repair protein; Provisional
Probab=95.59 E-value=5.1 Score=47.82 Aligned_cols=42 Identities=10% Similarity=0.041 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCHHHHH
Q 002520 858 AYKHWQSLKKQAYDKNQHFWKYKDDTKQANDLASKGDREALQ 899 (913)
Q Consensus 858 AyekIkELRkQ~DeLNsEFyq~Rr~l~kARdLAa~~dv~eLq 899 (913)
.-..+..|..++..+.+.|.+....+.++|.-+|..=.+++.
T Consensus 339 ~e~~l~~Le~e~~~l~~~l~~~A~~LS~~R~~aA~~l~~~v~ 380 (553)
T PRK10869 339 QEDDLETLALAVEKHHQQALETAQKLHQSRQRYAKELAQLIT 380 (553)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678888888888888888888888888877754444443
No 138
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=95.59 E-value=8.4 Score=47.28 Aligned_cols=85 Identities=19% Similarity=0.169 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 816 LRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHW--------QSLKKQAYDKNQHFWKYKDDTKQAN 887 (913)
Q Consensus 816 LReKIkkLekELEeLkkKIeEAqaELdELqeElrAaeEeRQEAyekI--------kELRkQ~DeLNsEFyq~Rr~l~kAR 887 (913)
+++.|.++.++++...+.+...+..+..+..+..+.....+.+|..+ .++|.+..++-...-..|..+.++.
T Consensus 521 ~~E~I~k~~ae~~rq~~~~~~sr~~~~~le~~~~a~qat~d~a~~Dlqk~nrlkQdear~~~~~lvqqv~dLR~~L~~~E 600 (961)
T KOG4673|consen 521 LQETIEKHQAELTRQKDYYSNSRALAAALEAQALAEQATNDEARSDLQKENRLKQDEARERESMLVQQVEDLRQTLSKKE 600 (961)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555555555555555555555555554422 1334444444444445555555544
Q ss_pred Hhhh------cCCHHHHHH
Q 002520 888 DLAS------KGDREALQH 900 (913)
Q Consensus 888 dLAa------~~dv~eLqe 900 (913)
+-|+ +++++.|+.
T Consensus 601 q~aarrEd~~R~Ei~~Lqr 619 (961)
T KOG4673|consen 601 QQAARREDMFRGEIEDLQR 619 (961)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4333 345555544
No 139
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=95.53 E-value=4.1 Score=43.35 Aligned_cols=21 Identities=14% Similarity=0.295 Sum_probs=11.1
Q ss_pred CcHHHHH-HHHHHHHHHHHHHH
Q 002520 761 PLKEEKQ-IIREIKQLKQRREQ 781 (913)
Q Consensus 761 sLqEEKQ-lIrEISQLEkeRKd 781 (913)
.+..||. +...++.|++...+
T Consensus 73 ~~~~erdq~~~dL~s~E~sfsd 94 (207)
T PF05010_consen 73 KLLKERDQAYADLNSLEKSFSD 94 (207)
T ss_pred HHHhhHHHHHHHHHHHHhhHHH
Confidence 3444555 55555555555544
No 140
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=95.53 E-value=8.6 Score=46.97 Aligned_cols=31 Identities=19% Similarity=0.237 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 703 KLEAAISDERSARESLKSKRQEIDSVQSRIN 733 (913)
Q Consensus 703 eLKkLVeEIkrLReEInEKrKEIesLQSeLs 733 (913)
+|..+..++...+.++...+...+.++..+.
T Consensus 238 ~L~~l~~ql~~a~~~~~~a~a~~~~l~~~l~ 268 (754)
T TIGR01005 238 QLAELNTELSRARANRAAAEGTADSVKKALQ 268 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444445555555555555555555555553
No 141
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=95.45 E-value=4.1 Score=42.79 Aligned_cols=22 Identities=23% Similarity=0.435 Sum_probs=11.6
Q ss_pred HHHHH-HHHHHHHHHHHHHHhhh
Q 002520 763 KEEKQ-IIREIKQLKQRREQISS 784 (913)
Q Consensus 763 qEEKQ-lIrEISQLEkeRKdV~s 784 (913)
.+|-+ +...+.+|+..|.++..
T Consensus 106 k~e~evL~qr~~kle~ErdeL~~ 128 (201)
T PF13851_consen 106 KWEHEVLEQRFEKLEQERDELYR 128 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444 55555666666655433
No 142
>PRK10698 phage shock protein PspA; Provisional
Probab=95.37 E-value=1.3 Score=47.00 Aligned_cols=93 Identities=18% Similarity=0.250 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhh------hcccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 763 KEEKQIIREIKQLKQRREQIS------SSIGEHDEVQLAFDQKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHRE 836 (913)
Q Consensus 763 qEEKQlIrEISQLEkeRKdV~------snIs~kakIEqSLeEKenIqEQIKELKKEIDELReKIkkLekELEeLkkKIeE 836 (913)
..+|.+.+++.+++....+.. ...+..+-+...|.+|.....++..++.+++.++..+.++...+..|+.++.+
T Consensus 52 A~~k~~er~~~~~~~~~~~~e~kA~~Al~~G~EdLAr~AL~~K~~~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~e 131 (222)
T PRK10698 52 AEKKQLTRRIEQAEAQQVEWQEKAELALRKEKEDLARAALIEKQKLTDLIATLEHEVTLVDETLARMKKEIGELENKLSE 131 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445555555544443322 22333445677888899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 002520 837 ESEKLKRLLGQFKAADEIR 855 (913)
Q Consensus 837 AqaELdELqeElrAaeEeR 855 (913)
++.+...|..+.+.+....
T Consensus 132 ak~k~~~L~aR~~~A~a~~ 150 (222)
T PRK10698 132 TRARQQALMLRHQAASSSR 150 (222)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999888777543
No 143
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=95.37 E-value=3.4 Score=41.41 Aligned_cols=53 Identities=11% Similarity=0.179 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 002520 827 TQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSL-KKQAYDKNQHFWKY 879 (913)
Q Consensus 827 LEeLkkKIeEAqaELdELqeElrAaeEeRQEAyekIkEL-RkQ~DeLNsEFyq~ 879 (913)
+..+..++.++...+..+..++......+...+..+... ...+..+...|.+.
T Consensus 147 i~~l~~~i~~~e~~~~~~~~~~~~i~~~~~~El~~f~~~~~~dlk~~l~~~~~~ 200 (218)
T cd07596 147 VEELEEELEEAESALEEARKRYEEISERLKEELKRFHEERARDLKAALKEFARL 200 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444444444432 22344444444433
No 144
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.36 E-value=5.7 Score=47.52 Aligned_cols=92 Identities=17% Similarity=0.339 Sum_probs=71.8
Q ss_pred CcHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 761 PLKEEKQIIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEK 840 (913)
Q Consensus 761 sLqEEKQlIrEISQLEkeRKdV~snIs~kakIEqSLeEKenIqEQIKELKKEIDELReKIkkLekELEeLkkKIeEAqaE 840 (913)
.-.+||+...+|.+-++.++++...++ .++..+.+ -.+++..++.+...|...+.+.+.+++.+.=-++..+++
T Consensus 322 r~rderE~~EeIe~~~ke~kdLkEkv~---~lq~~l~e---ke~sl~dlkehassLas~glk~ds~Lk~leIalEqkkEe 395 (654)
T KOG4809|consen 322 RERDERERLEEIESFRKENKDLKEKVN---ALQAELTE---KESSLIDLKEHASSLASAGLKRDSKLKSLEIALEQKKEE 395 (654)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH---HHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHH
Confidence 466788899999999999999877776 45543332 345777888899999999998888888887777777788
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 002520 841 LKRLLGQFKAADEIRQEA 858 (913)
Q Consensus 841 LdELqeElrAaeEeRQEA 858 (913)
+..+..++..+.+..+.+
T Consensus 396 c~kme~qLkkAh~~~dda 413 (654)
T KOG4809|consen 396 CSKMEAQLKKAHNIEDDA 413 (654)
T ss_pred HHHHHHHHHHHHHhhHhh
Confidence 888888888777777665
No 145
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.30 E-value=2.7 Score=51.75 Aligned_cols=18 Identities=17% Similarity=0.510 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 002520 764 EEKQIIREIKQLKQRREQ 781 (913)
Q Consensus 764 EEKQlIrEISQLEkeRKd 781 (913)
.||+..+|+.+++..++.
T Consensus 633 AEr~~~~EL~~~~~~l~~ 650 (717)
T PF10168_consen 633 AEREFKKELERMKDQLQD 650 (717)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 355566666655555544
No 146
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=95.25 E-value=0.61 Score=50.06 Aligned_cols=82 Identities=13% Similarity=0.203 Sum_probs=60.9
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 795 AFDQKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQ 874 (913)
Q Consensus 795 SLeEKenIqEQIKELKKEIDELReKIkkLekELEeLkkKIeEAqaELdELqeElrAaeEeRQEAyekIkELRkQ~DeLNs 874 (913)
.+...++...-|.+++++++.|..+....-.+|..|...|+.+...+.+...+++...+..+..|+.+..|+.+.+++..
T Consensus 23 e~~~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~ 102 (230)
T PF10146_consen 23 EVESLENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRK 102 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455566777888888888887777777888887777777777777777777777777777777777777777766
Q ss_pred HH
Q 002520 875 HF 876 (913)
Q Consensus 875 EF 876 (913)
+|
T Consensus 103 e~ 104 (230)
T PF10146_consen 103 EY 104 (230)
T ss_pred HH
Confidence 64
No 147
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=95.23 E-value=6 Score=44.48 Aligned_cols=126 Identities=13% Similarity=0.149 Sum_probs=84.4
Q ss_pred CcHHHHH-HHHHHHHHHHHHHHhhhcccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 761 PLKEEKQ-IIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESE 839 (913)
Q Consensus 761 sLqEEKQ-lIrEISQLEkeRKdV~snIs~kakIEqSLeEKenIqEQIKELKKEIDELReKIkkLekELEeLkkKIeEAqa 839 (913)
.|.+|-+ ++.|.++|...-..+..+- +.-+..-..+...-..+|..+..++..-.+.......+|..|..++-.++.
T Consensus 171 ~LEeEN~~LR~Ea~~L~~et~~~EekE--qqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~ 248 (306)
T PF04849_consen 171 SLEEENEQLRSEASQLKTETDTYEEKE--QQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEITSLLSQIVDLQQ 248 (306)
T ss_pred HHHHHHHHHHHHHHHhhHHHhhccHHH--HHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677766 7777777765543321110 001111111222333466666666666666666777788888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 840 KLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKDDTKQAND 888 (913)
Q Consensus 840 ELdELqeElrAaeEeRQEAyekIkELRkQ~DeLNsEFyq~Rr~l~kARd 888 (913)
++..+..+...+...+....+.-..|..++..+...|..+...+..|++
T Consensus 249 r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~EaQE 297 (306)
T PF04849_consen 249 RCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAMLHEAQE 297 (306)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888777888888888888888888888888887765
No 148
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=95.19 E-value=3.3 Score=45.82 Aligned_cols=17 Identities=6% Similarity=0.020 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 002520 672 AQSKVDEKTRSRDAIRD 688 (913)
Q Consensus 672 LekEIEeL~kqRdEIna 688 (913)
++.++..+..++..+.+
T Consensus 79 ~~~~l~~l~~~~~~l~a 95 (423)
T TIGR01843 79 VEADAAELESQVLRLEA 95 (423)
T ss_pred hhhHHHHHHHHHHHHHH
Confidence 34444444444433333
No 149
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=95.17 E-value=5.5 Score=47.58 Aligned_cols=86 Identities=14% Similarity=0.200 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002520 810 RKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKDDTKQANDL 889 (913)
Q Consensus 810 KKEIDELReKIkkLekELEeLkkKIeEAqaELdELqeElrAaeEeRQEAyekIkELRkQ~DeLNsEFyq~Rr~l~kARdL 889 (913)
.++++++++.+..+...+.+-...+..++..+..+...+.....+..+..+++..||+.=-+.....-++++.+..-+-+
T Consensus 353 e~eL~el~~~~~~i~~~~~~~~~~yS~lq~~l~~~~~~l~~i~~~q~~~~e~L~~LrkdEl~Are~l~~~~~~l~eikR~ 432 (570)
T COG4477 353 EKELKELESVLDEILENIEAQEVAYSELQDNLEEIEKALTDIEDEQEKVQEHLTSLRKDELEARENLERLKSKLHEIKRY 432 (570)
T ss_pred HHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555666777777777777777777777777777777777777777777777666666666
Q ss_pred hhcCCH
Q 002520 890 ASKGDR 895 (913)
Q Consensus 890 Aa~~dv 895 (913)
.-+.+.
T Consensus 433 mek~nL 438 (570)
T COG4477 433 MEKSNL 438 (570)
T ss_pred HHHcCC
Confidence 555443
No 150
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=95.16 E-value=2 Score=45.53 Aligned_cols=22 Identities=18% Similarity=0.356 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 002520 810 RKEADSLRENVIKAEAATQAVK 831 (913)
Q Consensus 810 KKEIDELReKIkkLekELEeLk 831 (913)
+..+..++..+..++.+++..+
T Consensus 69 ~~r~~~l~~~i~~~~~~i~~~r 90 (302)
T PF10186_consen 69 RERLERLRERIERLRKRIEQKR 90 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 151
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=95.16 E-value=0.67 Score=45.40 Aligned_cols=99 Identities=16% Similarity=0.247 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 801 QIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYK 880 (913)
Q Consensus 801 nIqEQIKELKKEIDELReKIkkLekELEeLkkKIeEAqaELdELqeElrAaeEeRQEAyekIkELRkQ~DeLNsEFyq~R 880 (913)
.++.+|+.+..++..++.++..+.. ..+.+.++|-.+..+.+.+. .....+..|+.++..++..|--..
T Consensus 20 ~L~s~lr~~E~E~~~l~~el~~l~~-------~r~~l~~Eiv~l~~~~e~~~----~~~~~~~~L~~el~~l~~ry~t~L 88 (120)
T PF12325_consen 20 RLQSQLRRLEGELASLQEELARLEA-------ERDELREEIVKLMEENEELR----ALKKEVEELEQELEELQQRYQTLL 88 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555444433 33333455554444444332 234456666666666666666666
Q ss_pred HHHHHHHHhhh--cCCHHHHHHHHHHHHHhhh
Q 002520 881 DDTKQANDLAS--KGDREALQHLCVNQVRSRT 910 (913)
Q Consensus 881 r~l~kARdLAa--~~dv~eLqelc~~QVEkfm 910 (913)
-.+..-.+.+- +.|+..|+++|..||+..|
T Consensus 89 ellGEK~E~veEL~~Dv~DlK~myr~Qi~~lv 120 (120)
T PF12325_consen 89 ELLGEKSEEVEELRADVQDLKEMYREQIDQLV 120 (120)
T ss_pred HHhcchHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 66655444433 3689999999999998764
No 152
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=95.15 E-value=5.9 Score=42.84 Aligned_cols=27 Identities=7% Similarity=0.142 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 836 EESEKLKRLLGQFKAADEIRQEAYKHW 862 (913)
Q Consensus 836 EAqaELdELqeElrAaeEeRQEAyekI 862 (913)
+++.+....+.+++...+.+.+.+..+
T Consensus 170 e~e~k~~~a~~~fe~is~~ik~El~rF 196 (234)
T cd07665 170 EWESRVTQYERDFERISATVRKEVIRF 196 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444444443333
No 153
>PF13514 AAA_27: AAA domain
Probab=95.12 E-value=10 Score=48.58 Aligned_cols=13 Identities=23% Similarity=0.511 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHh
Q 002520 770 REIKQLKQRREQI 782 (913)
Q Consensus 770 rEISQLEkeRKdV 782 (913)
.+...|...+..+
T Consensus 854 ~~~~~l~~~~~~~ 866 (1111)
T PF13514_consen 854 EERRELREELEDL 866 (1111)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444443
No 154
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=95.11 E-value=9.1 Score=45.55 Aligned_cols=43 Identities=7% Similarity=-0.059 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 665 LREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAA 707 (913)
Q Consensus 665 LKaKIdeLekEIEeL~kqRdEInaELqeLReERdELeSeLKkL 707 (913)
+..++..+-.+...+.+++.++......+..+++.+..+|..+
T Consensus 159 ~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~EL 201 (563)
T TIGR00634 159 KVKAYRELYQAWLKARQQLKDRQQKEQELAQRLDFLQFQLEEL 201 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555444444444444444444444
No 155
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=95.08 E-value=11 Score=48.09 Aligned_cols=39 Identities=18% Similarity=0.142 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcC--CHHHHHHHHHH
Q 002520 866 KKQAYDKNQHFWKYKDDTKQANDLASKG--DREALQHLCVN 904 (913)
Q Consensus 866 RkQ~DeLNsEFyq~Rr~l~kARdLAa~~--dv~eLqelc~~ 904 (913)
+..+-.+++-|..-+..+-+--+|.++- -+-.|.+||.+
T Consensus 1304 k~di~kl~~~lv~kQKAYP~M~QlQ~ksealI~qLRelC~~ 1344 (1439)
T PF12252_consen 1304 KEDIVKLNDFLVEKQKAYPAMVQLQFKSEALIIQLRELCEA 1344 (1439)
T ss_pred HHHHHHHHHHHHHHhhhchHHHHHhhhhHHHHHHHHHHHHH
Confidence 3334444444444444444444444442 25667777776
No 156
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=95.08 E-value=1.5 Score=46.31 Aligned_cols=42 Identities=14% Similarity=0.374 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 801 QIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLK 842 (913)
Q Consensus 801 nIqEQIKELKKEIDELReKIkkLekELEeLkkKIeEAqaELd 842 (913)
..+.++..++..+..+++++...+..+.+++..+...+..+.
T Consensus 67 ~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~ 108 (302)
T PF10186_consen 67 ELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLS 108 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444444443
No 157
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.03 E-value=8.1 Score=48.13 Aligned_cols=14 Identities=14% Similarity=0.228 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHH
Q 002520 768 IIREIKQLKQRREQ 781 (913)
Q Consensus 768 lIrEISQLEkeRKd 781 (913)
....|.++++....
T Consensus 763 ~~~~~es~k~~~~~ 776 (970)
T KOG0946|consen 763 KNADIESFKATQRS 776 (970)
T ss_pred hhHHHHHHHHHHhh
Confidence 44445555555443
No 158
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=95.01 E-value=0.0065 Score=73.14 Aligned_cols=56 Identities=13% Similarity=0.175 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 812 EADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKK 867 (913)
Q Consensus 812 EIDELReKIkkLekELEeLkkKIeEAqaELdELqeElrAaeEeRQEAyekIkELRk 867 (913)
++..++.++..++.++.....+++.+.-++..++++..++...+......+..|+.
T Consensus 364 qle~~k~qi~eLe~~l~~~~~~~~~l~~e~~~L~ek~~~l~~eke~l~~e~~~L~e 419 (713)
T PF05622_consen 364 QLEEYKKQIQELEQKLSEESRRADKLEFENKQLEEKLEALEEEKERLQEERDSLRE 419 (713)
T ss_dssp --------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444443344444444444444444444444444444333333333333
No 159
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=94.99 E-value=13 Score=45.83 Aligned_cols=63 Identities=11% Similarity=0.176 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 664 NLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEID 726 (913)
Q Consensus 664 eLKaKIdeLekEIEeL~kqRdEInaELqeLReERdELeSeLKkLVeEIkrLReEInEKrKEIe 726 (913)
.|-.+-..+.+-.+.+...-.++...++....+..++..+|..+......|-..+.++..++.
T Consensus 419 kll~ekk~~eki~E~lq~~eqel~~llq~~ekev~dLe~~l~~~~~~eq~yskQVeeLKtELE 481 (786)
T PF05483_consen 419 KLLDEKKQFEKIAEELQGTEQELTGLLQIREKEVHDLEIQLTTIKESEQHYSKQVEELKTELE 481 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 344444555555555555555666667777777777777777777666666666666666554
No 160
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=94.80 E-value=7.3 Score=44.95 Aligned_cols=7 Identities=57% Similarity=0.605 Sum_probs=2.7
Q ss_pred eeccCCC
Q 002520 556 IQSTDGG 562 (913)
Q Consensus 556 ~~~~~~~ 562 (913)
+|+..||
T Consensus 62 vq~~~~G 68 (457)
T TIGR01000 62 IQSTSNN 68 (457)
T ss_pred EEcCCCc
Confidence 3333333
No 161
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=94.68 E-value=1.4 Score=43.00 Aligned_cols=31 Identities=19% Similarity=0.297 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 799 KDQIEEKMKFLRKEADSLRENVIKAEAATQA 829 (913)
Q Consensus 799 KenIqEQIKELKKEIDELReKIkkLekELEe 829 (913)
+..+...|..++..+++|...-.-|+..|+.
T Consensus 100 k~~le~e~~~~~~r~~dL~~QN~lLh~QlE~ 130 (132)
T PF07926_consen 100 KEQLEKELSELEQRIEDLNEQNKLLHDQLES 130 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4455555555555555555555555555544
No 162
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.67 E-value=9.3 Score=45.86 Aligned_cols=60 Identities=15% Similarity=0.173 Sum_probs=41.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 663 ENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKR 722 (913)
Q Consensus 663 PeLKaKIdeLekEIEeL~kqRdEInaELqeLReERdELeSeLKkLVeEIkrLReEInEKr 722 (913)
.+...+|+..+++...|...++.+...+..+.+.+..|......+.+.+-.+..+++++.
T Consensus 327 rE~~EeIe~~~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~le 386 (654)
T KOG4809|consen 327 RERLEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLE 386 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHH
Confidence 566677888888888888888877777777777777777666666555544444444433
No 163
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=94.67 E-value=2.5 Score=51.97 Aligned_cols=46 Identities=13% Similarity=0.293 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHH----------HHHHHHHHHhcc---CCCCHHHHHHHHHHHHHHHh
Q 002520 711 ERSARESLKSKRQE----------IDSVQSRINMMK---NAISVDDIDGSIRNMEHRIA 756 (913)
Q Consensus 711 IkrLReEInEKrKE----------IesLQSeLsKLr---S~KSVEELQeEIkeLE~QIQ 756 (913)
...|..+|+++..+ ++.+.....+++ ....-++|..+|.+++..|.
T Consensus 556 a~~Lk~ei~kki~e~~~~~~~kek~ea~~aev~~~g~s~~~~~~~~lkeki~~~~~Ei~ 614 (762)
T PLN03229 556 AEKLKAEINKKFKEVMDRPEIKEKMEALKAEVASSGASSGDELDDDLKEKVEKMKKEIE 614 (762)
T ss_pred hhhhhHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCccccCCCCHHHHHHHHHHHHHHH
Confidence 45556666655555 333444333333 12455666666666666554
No 164
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=94.65 E-value=15 Score=45.16 Aligned_cols=15 Identities=33% Similarity=0.539 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHh
Q 002520 768 IIREIKQLKQRREQI 782 (913)
Q Consensus 768 lIrEISQLEkeRKdV 782 (913)
+-+.+.+|...-+.+
T Consensus 195 ~~~~~~ql~~~~q~~ 209 (716)
T KOG4593|consen 195 LDRQHKQLQEENQKI 209 (716)
T ss_pred HHHHHHHHHHHHHHH
Confidence 555555555554443
No 165
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=94.65 E-value=6.8 Score=41.33 Aligned_cols=66 Identities=20% Similarity=0.207 Sum_probs=55.6
Q ss_pred hhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 789 HDEVQLAFDQKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEI 854 (913)
Q Consensus 789 kakIEqSLeEKenIqEQIKELKKEIDELReKIkkLekELEeLkkKIeEAqaELdELqeElrAaeEe 854 (913)
.+-+...|.++...+.++..++.++..++..+.++...+..|+.++.+++.+-..+..+.+.+...
T Consensus 84 EdLAr~Al~~k~~~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a~ 149 (219)
T TIGR02977 84 EDLARAALIEKQKAQELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAASSR 149 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566778888888999999999999999999999999999999999999888888888776654
No 166
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=94.56 E-value=10 Score=42.65 Aligned_cols=38 Identities=26% Similarity=0.408 Sum_probs=21.8
Q ss_pred chhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 788 EHDEVQLAFDQKDQIEEKMKFLRKEADSLRENVIKAEA 825 (913)
Q Consensus 788 ~kakIEqSLeEKenIqEQIKELKKEIDELReKIkkLek 825 (913)
.++++...+++.+.+++++..+..+.-=||..+..+..
T Consensus 205 e~~kv~k~~~Kqes~eERL~QlqsEN~LLrQQLddA~~ 242 (305)
T PF14915_consen 205 EQDKVNKYIGKQESLEERLSQLQSENMLLRQQLDDAHN 242 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666665555555555444443
No 167
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.56 E-value=13 Score=44.86 Aligned_cols=30 Identities=17% Similarity=0.363 Sum_probs=14.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 663 ENLREQIKAAQSKVDEKTRSRDAIRDDIQT 692 (913)
Q Consensus 663 PeLKaKIdeLekEIEeL~kqRdEInaELqe 692 (913)
..|+.++++++.+.+.++.+++..+..+..
T Consensus 46 ~~Lkqq~eEleaeyd~~R~Eldqtkeal~q 75 (772)
T KOG0999|consen 46 EDLKQQLEELEAEYDLARTELDQTKEALGQ 75 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555544444444444444433
No 168
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=94.53 E-value=20 Score=46.00 Aligned_cols=60 Identities=12% Similarity=0.248 Sum_probs=34.4
Q ss_pred CCCchhhhhhhcccccccc--CcceeeccCCCC--C---chHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 630 EGSTVDASESRNIGVEVVK--QPFYFLVKVPRY--D---DENLREQIKAAQSKVDEKTRSRDAIRDDIQ 691 (913)
Q Consensus 630 eesLKDaVEe~kE~Ld~LR--r~fYf~Vr~rRL--d---DPeLKaKIdeLekEIEeL~kqRdEInaELq 691 (913)
.+.+-..++.++.+|...| .-.| +.=.+| + ..+...+|+++..+++.+..++..+.....
T Consensus 406 lKd~~~EIerLK~dl~AaReKnGvy--isee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~ 472 (1041)
T KOG0243|consen 406 LKDLYEEIERLKRDLAAAREKNGVY--ISEERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYM 472 (1041)
T ss_pred HHHHHHHHHHHHHHHHHhHhhCceE--echHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3566677888888888887 4445 555555 2 133444555555555555555544444443
No 169
>PF13166 AAA_13: AAA domain
Probab=94.47 E-value=12 Score=45.18 Aligned_cols=22 Identities=9% Similarity=0.228 Sum_probs=10.2
Q ss_pred hHHHHHHHH-HHHHHHHHHHHHH
Q 002520 663 ENLREQIKA-AQSKVDEKTRSRD 684 (913)
Q Consensus 663 PeLKaKIde-LekEIEeL~kqRd 684 (913)
+++..+|.. .....+....++.
T Consensus 268 ~~~~~~l~~~f~~~~~~~~~~l~ 290 (712)
T PF13166_consen 268 EERKERLEKYFDEEYEKLIEELE 290 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666655 2444433333333
No 170
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=94.41 E-value=16 Score=44.43 Aligned_cols=25 Identities=20% Similarity=0.453 Sum_probs=13.7
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHH
Q 002520 657 VPRYDDENLREQIKAAQSKVDEKTR 681 (913)
Q Consensus 657 ~rRLdDPeLKaKIdeLekEIEeL~k 681 (913)
|.+.+-..|+.+++..-.+|.....
T Consensus 12 Wk~~dle~LQreLd~~~~~l~~~Q~ 36 (629)
T KOG0963|consen 12 WKRFDLERLQRELDAEATEIAQRQD 36 (629)
T ss_pred HHhccHHHHHHHHHHHHHHHHhhhh
Confidence 4555556666666655555544433
No 171
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=94.36 E-value=10 Score=44.77 Aligned_cols=74 Identities=15% Similarity=0.247 Sum_probs=41.1
Q ss_pred hHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 663 ENLREQIKAAQSK----------VDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRI 732 (913)
Q Consensus 663 PeLKaKIdeLekE----------IEeL~kqRdEInaELqeLReERdELeSeLKkLVeEIkrLReEInEKrKEIesLQSeL 732 (913)
--|++++++|+-+ |.+|+...++++..--.+.-++.++...|+.+..-+...++.+.+.+++-+.|+-++
T Consensus 341 ~yLe~kvkeLQ~k~~kQqvfvDiinkLk~niEeLIedKY~viLEKnd~~k~lqnLqe~la~tqk~LqEsr~eKetLqlel 420 (527)
T PF15066_consen 341 LYLEKKVKELQMKITKQQVFVDIINKLKENIEELIEDKYRVILEKNDIEKTLQNLQEALANTQKHLQESRNEKETLQLEL 420 (527)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 4466666666543 333444444444444444455556666666666666666666666666666666555
Q ss_pred Hhcc
Q 002520 733 NMMK 736 (913)
Q Consensus 733 sKLr 736 (913)
.+++
T Consensus 421 kK~k 424 (527)
T PF15066_consen 421 KKIK 424 (527)
T ss_pred HHHh
Confidence 5443
No 172
>PLN02939 transferase, transferring glycosyl groups
Probab=94.32 E-value=22 Score=45.58 Aligned_cols=49 Identities=16% Similarity=0.148 Sum_probs=35.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 663 ENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDE 711 (913)
Q Consensus 663 PeLKaKIdeLekEIEeL~kqRdEInaELqeLReERdELeSeLKkLVeEI 711 (913)
+.|---|..+++-|--+++.|-..-..++++..++..++.++.-+...+
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (977)
T PLN02939 131 EDLVGMIQNAEKNILLLNQARLQALEDLEKILTEKEALQGKINILEMRL 179 (977)
T ss_pred HHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHh
Confidence 6677777777777777888877777777777777777777666554433
No 173
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=94.31 E-value=8.8 Score=40.96 Aligned_cols=17 Identities=29% Similarity=0.395 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHhhhc
Q 002520 769 IREIKQLKQRREQISSS 785 (913)
Q Consensus 769 IrEISQLEkeRKdV~sn 785 (913)
..+|.++...+.++...
T Consensus 68 ~~~i~~~~~erdq~~~d 84 (207)
T PF05010_consen 68 EAEIQKLLKERDQAYAD 84 (207)
T ss_pred HHHHHHHHhhHHHHHHH
Confidence 33444444444443333
No 174
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=94.25 E-value=16 Score=43.72 Aligned_cols=35 Identities=11% Similarity=0.059 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 808 FLRKEADSLRENVIKAEAATQAVKKLHREESEKLK 842 (913)
Q Consensus 808 ELKKEIDELReKIkkLekELEeLkkKIeEAqaELd 842 (913)
++.+.+..++++++.+-.+|+.+..++.-.+..++
T Consensus 409 e~~~~l~~v~eKVd~LpqqI~~vs~Kc~~~Ksd~d 443 (531)
T PF15450_consen 409 EMEKHLKEVQEKVDSLPQQIEEVSDKCDLHKSDSD 443 (531)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhh
Confidence 34455666666666666666666666665555554
No 175
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=94.25 E-value=7.3 Score=46.03 Aligned_cols=23 Identities=9% Similarity=0.241 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 002520 664 NLREQIKAAQSKVDEKTRSRDAI 686 (913)
Q Consensus 664 eLKaKIdeLekEIEeL~kqRdEI 686 (913)
.|+.++..++.++..++.++..+
T Consensus 113 ~lk~~l~e~~~El~~l~~~l~~l 135 (511)
T PF09787_consen 113 VLKIRLQELDQELRRLRRQLEEL 135 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444555544444444443
No 176
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=94.17 E-value=0.013 Score=72.17 Aligned_cols=110 Identities=17% Similarity=0.251 Sum_probs=0.0
Q ss_pred cHHHHH-HHHHHHHHHHHHHHhhhcccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 762 LKEEKQ-IIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEK 840 (913)
Q Consensus 762 LqEEKQ-lIrEISQLEkeRKdV~snIs~kakIEqSLeEKenIqEQIKELKKEIDELReKIkkLekELEeLkkKIeEAqaE 840 (913)
|.+-|+ +.+.|..|...+.......+ .+.. .+..++..+..+.-+++..+.....+.+....+...+.+.+..
T Consensus 319 lEeaKKkL~~~L~el~e~le~~~~~~~---~LeK---~k~rL~~EleDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~ 392 (859)
T PF01576_consen 319 LEEAKKKLERKLQELQEQLEEANAKVS---SLEK---TKKRLQGELEDLTSELEKAQAAAAELEKKQRKFDKQLAEWKAK 392 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 344444 66666677666666555544 2221 1334555666666666666655555555555555555555566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 841 LKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFW 877 (913)
Q Consensus 841 LdELqeElrAaeEeRQEAyekIkELRkQ~DeLNsEFy 877 (913)
+..+...++.+..........+..|+.+++.+...+-
T Consensus 393 ~~~~~~e~d~~q~e~r~~~te~~~Lk~~lee~~e~~e 429 (859)
T PF01576_consen 393 VEELQAERDAAQREARELETELFKLKNELEELQEQLE 429 (859)
T ss_dssp -------------------------------------
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHH
Confidence 6666666666555555555555555555555554443
No 177
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=94.08 E-value=0.014 Score=70.25 Aligned_cols=16 Identities=13% Similarity=0.474 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHH
Q 002520 739 ISVDDIDGSIRNMEHR 754 (913)
Q Consensus 739 KSVEELQeEIkeLE~Q 754 (913)
...+.++.+++.|+.+
T Consensus 325 ed~~~lk~qvk~Lee~ 340 (713)
T PF05622_consen 325 EDLEDLKRQVKELEED 340 (713)
T ss_dssp ----------------
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444555555555444
No 178
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=93.91 E-value=14 Score=41.91 Aligned_cols=20 Identities=5% Similarity=0.119 Sum_probs=9.8
Q ss_pred CcceeeccCCCCCchHHHHHH
Q 002520 649 QPFYFLVKVPRYDDENLREQI 669 (913)
Q Consensus 649 r~fYf~Vr~rRLdDPeLKaKI 669 (913)
.+.++-++|.. .||.+-..+
T Consensus 130 ~s~ii~is~~~-~dp~~A~~i 149 (444)
T TIGR03017 130 ESSVISIEFSG-VDPRFAATV 149 (444)
T ss_pred CceEEEEEEeC-CCHHHHHHH
Confidence 34443455544 456555555
No 179
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=93.88 E-value=9.3 Score=42.11 Aligned_cols=28 Identities=21% Similarity=0.400 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 804 EKMKFLRKEADSLRENVIKAEAATQAVK 831 (913)
Q Consensus 804 EQIKELKKEIDELReKIkkLekELEeLk 831 (913)
..|...|..++++...|..|+++++.|.
T Consensus 193 kei~~~re~i~el~e~I~~L~~eV~~L~ 220 (258)
T PF15397_consen 193 KEIVQFREEIDELEEEIPQLRAEVEQLQ 220 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444
No 180
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=93.84 E-value=6.1 Score=46.98 Aligned_cols=31 Identities=13% Similarity=0.203 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 693 IRASYKEYAEKLEAAISDERSARESLKSKRQ 723 (913)
Q Consensus 693 LReERdELeSeLKkLVeEIkrLReEInEKrK 723 (913)
+..+-..+..++.+...++.+++.+++.+..
T Consensus 95 Lq~~nesLeEqv~~~~d~vvql~hels~k~e 125 (596)
T KOG4360|consen 95 LQEDNESLEEQVDAPWDRVVQLGHELSRKDE 125 (596)
T ss_pred hhhhhhhhHhhhcchHHHHHHhhhhhhhhhh
Confidence 3344445555666666677777777665554
No 181
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=93.65 E-value=7.8 Score=44.08 Aligned_cols=139 Identities=16% Similarity=0.285 Sum_probs=82.7
Q ss_pred CCHHHHHHHHHHHHHHHhhcC--C-CcHH---HHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHhHHHHHHHHHHHHHH
Q 002520 739 ISVDDIDGSIRNMEHRIAHET--L-PLKE---EKQIIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKFLRKE 812 (913)
Q Consensus 739 KSVEELQeEIkeLE~QIQheS--L-sLqE---EKQlIrEISQLEkeRKdV~snIs~kakIEqSLeEKenIqEQIKELKKE 812 (913)
..+.+|+.+|..||..+.... + .|.. -+-++.-|..|...+..+.. ...+.|..+++.+..+
T Consensus 209 a~~a~LE~RL~~LE~~lG~~~~~~~~l~~~~~~~~l~~~l~~L~~~lslL~~------------~~Ld~i~~rl~~L~~~ 276 (388)
T PF04912_consen 209 ARAADLEKRLARLESALGIDSDKMSSLDSDTSSSPLLPALNELERQLSLLDP------------AKLDSIERRLKSLLSE 276 (388)
T ss_pred HHHHHHHHHHHHHHHHhCCCccccccccccCCcchHHHHHHHHHHHHHhcCH------------HHHHHHHHHHHHHHHH
Confidence 578899999999999999943 3 3322 23377788888887765421 1223455555555555
Q ss_pred HHHHHHHHHHH------HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Q 002520 813 ADSLRENVIKA------EAATQ---AVKKLHREESEKLKRLLGQFKAADEIRQE---AYKHWQSLKKQAYDKNQHFWKYK 880 (913)
Q Consensus 813 IDELReKIkkL------ekELE---eLkkKIeEAqaELdELqeElrAaeEeRQE---AyekIkELRkQ~DeLNsEFyq~R 880 (913)
++.+.++.... ...|. .+-++++....-|..+..+++.+..-... ....+..+-.....+...+-+++
T Consensus 277 ~~~l~~~~~~~~~~~~~e~KI~eLy~~l~~~~~~~~~lP~lv~RL~tL~~lH~~a~~~~~~l~~le~~q~~l~~~l~~~~ 356 (388)
T PF04912_consen 277 LEELAEKRKEAKEDAEQESKIDELYEILPRWDPYAPSLPSLVERLKTLKSLHEEAAEFSQTLSELESQQSDLQSQLKKWE 356 (388)
T ss_pred HHHHHhccccccccccchhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44443332222 11222 22344455555666677777666544444 46677777777777777777777
Q ss_pred HHHHHHHHh
Q 002520 881 DDTKQANDL 889 (913)
Q Consensus 881 r~l~kARdL 889 (913)
..+.....=
T Consensus 357 ~~L~~ve~~ 365 (388)
T PF04912_consen 357 ELLNKVEEK 365 (388)
T ss_pred HHHHHHHHH
Confidence 777766543
No 182
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=93.64 E-value=26 Score=44.07 Aligned_cols=111 Identities=14% Similarity=0.130 Sum_probs=56.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhccCCCCH
Q 002520 663 ENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQS-RINMMKNAISV 741 (913)
Q Consensus 663 PeLKaKIdeLekEIEeL~kqRdEInaELqeLReERdELeSeLKkLVeEIkrLReEInEKrKEIesLQS-eLsKLrS~KSV 741 (913)
......|..-+.++.++...+...+-+..+++..+.....-++++..++. .++....+++..|.. .+. . -.
T Consensus 918 easicl~eeKDqei~EleailekQNca~eeakqn~eis~Ed~kkLhaE~d---aeLe~~~ael~eleqk~le----~-~e 989 (1424)
T KOG4572|consen 918 EASICLIEEKDQEIEELEAILEKQNCAHEEAKQNDEISEEDKKKLHAEID---AELEKEFAELIELEQKALE----C-KE 989 (1424)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHhhhhhHHHHhhcCcccHHHHHHhhHHHH---HHHHHHHHHHHHHHHHHHH----H-hh
Confidence 44555556666666666666666666666665555555554555544432 222222333322211 111 1 12
Q ss_pred HHHHH-HHHHHHHHHhhcCC---CcHHHHH-HHHHHHHHHHHHHH
Q 002520 742 DDIDG-SIRNMEHRIAHETL---PLKEEKQ-IIREIKQLKQRREQ 781 (913)
Q Consensus 742 EELQe-EIkeLE~QIQheSL---sLqEEKQ-lIrEISQLEkeRKd 781 (913)
++++. .++.++..++..+. .+..|-+ ++++|.+|+..+.+
T Consensus 990 Dea~aRh~kefE~~mrdhrselEe~kKe~eaiineiee~eaeIiQ 1034 (1424)
T KOG4572|consen 990 DEAFARHEKEFEIEMRDHRSELEEKKKELEAIINEIEELEAEIIQ 1034 (1424)
T ss_pred hHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 23332 35666666666663 3444444 77777777776654
No 183
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=93.62 E-value=17 Score=42.60 Aligned_cols=25 Identities=20% Similarity=0.136 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 811 KEADSLRENVIKAEAATQAVKKLHR 835 (913)
Q Consensus 811 KEIDELReKIkkLekELEeLkkKIe 835 (913)
.-.+.|.++|++|+.+..-|++|++
T Consensus 201 alvN~LwKrmdkLe~ekr~Lq~KlD 225 (552)
T KOG2129|consen 201 ALVNSLWKRMDKLEQEKRYLQKKLD 225 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3356677777777776666665553
No 184
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=93.57 E-value=27 Score=44.10 Aligned_cols=42 Identities=14% Similarity=0.328 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 002520 694 RASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMM 735 (913)
Q Consensus 694 ReERdELeSeLKkLVeEIkrLReEInEKrKEIesLQSeLsKL 735 (913)
|.....+..++.++.-++...+.+..+.+.+-+.|+.++..+
T Consensus 357 r~~~~q~~~ql~~le~~~~e~q~~~qe~~~e~eqLr~elaql 398 (980)
T KOG0980|consen 357 RRRIEQYENQLLALEGELQEQQREAQENREEQEQLRNELAQL 398 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444455554455444545555555545555554433
No 185
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=93.46 E-value=17 Score=41.28 Aligned_cols=34 Identities=12% Similarity=0.257 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 674 SKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAA 707 (913)
Q Consensus 674 kEIEeL~kqRdEInaELqeLReERdELeSeLKkL 707 (913)
.+++.-..+|+.+...+..++.+...+..+.+.+
T Consensus 16 ~eLe~cq~ErDqyKlMAEqLqer~q~LKkk~~el 49 (319)
T PF09789_consen 16 QELEKCQSERDQYKLMAEQLQERYQALKKKYREL 49 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444445555555555555555544444444333
No 186
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=93.44 E-value=17 Score=41.34 Aligned_cols=123 Identities=15% Similarity=0.261 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHHHHH-hhhcccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 766 KQIIREIKQLKQRREQ-ISSSIGEHDEVQLAFDQKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRL 844 (913)
Q Consensus 766 KQlIrEISQLEkeRKd-V~snIs~kakIEqSLeEKenIqEQIKELKKEIDELReKIkkLekELEeLkkKIeEAqaELdEL 844 (913)
|..+.++.+-+..+++ +..|+++...++..|..-. +-...++.++..+.+++.+++++.---..+++.++..+-.+
T Consensus 207 k~~~e~~~~~e~qlK~ql~lY~aKyeefq~tl~KSN---E~F~~fK~E~ekmtKk~kklEKE~l~wr~K~e~aNk~vL~l 283 (391)
T KOG1850|consen 207 KIMLEEMKQVEGQLKEQLALYMAKYEEFQTTLAKSN---ELFTKFKQEMEKMTKKIKKLEKETLIWRTKWENANKAVLQL 283 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 3355555555555432 3345554455555554321 23445677888888888888888777788888888777655
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhcCCH
Q 002520 845 LGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKDDT-KQANDLASKGDR 895 (913)
Q Consensus 845 qeElrAaeEeRQEAyekIkELRkQ~DeLNsEFyq~Rr~l-~kARdLAa~~dv 895 (913)
..+ ...+++.|..+..-..++..+-.++..-|..+ ..++++-+++..
T Consensus 284 a~e----kt~~~k~~~~lq~kiq~LekLcRALq~ernel~~~~~~~e~~v~~ 331 (391)
T KOG1850|consen 284 AEE----KTVRDKEYETLQKKIQRLEKLCRALQTERNELNKKLEDLEAQVSA 331 (391)
T ss_pred HHH----hHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcccch
Confidence 443 33455566666666666666666665555444 456777666544
No 187
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=93.42 E-value=0.022 Score=70.32 Aligned_cols=21 Identities=19% Similarity=0.295 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHHHhhcC
Q 002520 739 ISVDDIDGSIRNMEHRIAHET 759 (913)
Q Consensus 739 KSVEELQeEIkeLE~QIQheS 759 (913)
+++.+|+...+.|+.......
T Consensus 454 k~v~eLek~kr~LE~e~~El~ 474 (859)
T PF01576_consen 454 KSVHELEKAKRRLEQEKEELQ 474 (859)
T ss_dssp ---------------------
T ss_pred cchHHHHHHHHHHHHHHHHHH
Confidence 566666666666666655544
No 188
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=93.33 E-value=7.2 Score=47.80 Aligned_cols=71 Identities=11% Similarity=0.162 Sum_probs=32.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 663 ENLREQIKAAQSKVDEKTRSRDAIRDDIQ-------TIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRIN 733 (913)
Q Consensus 663 PeLKaKIdeLekEIEeL~kqRdEInaELq-------eLReERdELeSeLKkLVeEIkrLReEInEKrKEIesLQSeLs 733 (913)
..|..+|..+++++..+...+........ .++.....+.-.|..++.+...-+.++.+...||+.|...|+
T Consensus 64 ~~L~~~ia~~eael~~l~s~l~~~~~~~~~~~k~e~tLke~l~~l~~~le~lr~qk~eR~~ef~el~~qie~l~~~l~ 141 (660)
T KOG4302|consen 64 ARLLQEIAVIEAELNDLCSALGEPSIIGEISDKIEGTLKEQLESLKPYLEGLRKQKDERRAEFKELYHQIEKLCEELG 141 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCcccccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34555555555555555444433221111 233333333333444444444444555555555555555553
No 189
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=93.23 E-value=10 Score=46.96 Aligned_cols=36 Identities=8% Similarity=0.114 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 698 KEYAEKLEAAISDERSARESLKSKRQEIDSVQSRIN 733 (913)
Q Consensus 698 dELeSeLKkLVeEIkrLReEInEKrKEIesLQSeLs 733 (913)
..+..+|..+-.+++.++.++.....+.+.|.....
T Consensus 30 ~~~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~ 65 (717)
T PF09730_consen 30 AYLQQRILELENELKQLRQELSNVQAENERLSQLNQ 65 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444333
No 190
>PRK11281 hypothetical protein; Provisional
Probab=93.16 E-value=37 Score=44.32 Aligned_cols=45 Identities=16% Similarity=0.114 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 813 ADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQE 857 (913)
Q Consensus 813 IDELReKIkkLekELEeLkkKIeEAqaELdELqeElrAaeEeRQE 857 (913)
..++-..+.++...+..+..+...++..++.+.+..+.+.++.+.
T Consensus 287 N~~Ls~~L~~~t~~~~~l~~~~~~~~~~l~~~~q~~~~i~eqi~~ 331 (1113)
T PRK11281 287 NLQLSQRLLKATEKLNTLTQQNLRVKNWLDRLTQSERNIKEQISV 331 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666666666666666666666666655555443
No 191
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=93.14 E-value=19 Score=40.94 Aligned_cols=26 Identities=0% Similarity=-0.051 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 669 IKAAQSKVDEKTRSRDAIRDDIQTIR 694 (913)
Q Consensus 669 IdeLekEIEeL~kqRdEInaELqeLR 694 (913)
+.-++.++..+++++.+...++...|
T Consensus 173 ~~fl~~ql~~~~~~l~~ae~~l~~fr 198 (444)
T TIGR03017 173 ALWFVQQIAALREDLARAQSKLSAYQ 198 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444333
No 192
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=93.09 E-value=6.2 Score=43.48 Aligned_cols=120 Identities=14% Similarity=0.231 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhhcCCCc
Q 002520 694 RASYKEYAEKLEAAISDERSARESLKSKRQ-----------EIDSVQSRINMMKNAISVDDIDGSIRNMEHRIAHETLPL 762 (913)
Q Consensus 694 ReERdELeSeLKkLVeEIkrLReEInEKrK-----------EIesLQSeLsKLrS~KSVEELQeEIkeLE~QIQheSLsL 762 (913)
.+.++.+..+++.+.....+++.+...... ++..|.+.+...+ -=.+.+++.|++|+..- =.|
T Consensus 51 esqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q~s~Leddlsqt~--aikeql~kyiReLEQaN----DdL 124 (333)
T KOG1853|consen 51 ESQLDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQQESQLEDDLSQTH--AIKEQLRKYIRELEQAN----DDL 124 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhc----cHH
Confidence 355555555555555555555544332221 2223333333332 12345555566655431 133
Q ss_pred HHHHH-HHHHHHHHHHHHHHhhhcccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 763 KEEKQ-IIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKFLRKEADSLRENVIK 822 (913)
Q Consensus 763 qEEKQ-lIrEISQLEkeRKdV~snIs~kakIEqSLeEKenIqEQIKELKKEIDELReKIkk 822 (913)
..-|+ .+--+..++..+.++....+ -++..|.+|+.+.+.+..+|.+...||.++.-
T Consensus 125 ErakRati~sleDfeqrLnqAIErnA---fLESELdEke~llesvqRLkdEardlrqelav 182 (333)
T KOG1853|consen 125 ERAKRATIYSLEDFEQRLNQAIERNA---FLESELDEKEVLLESVQRLKDEARDLRQELAV 182 (333)
T ss_pred HHhhhhhhhhHHHHHHHHHHHHHHHH---HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333 33333444444444333333 56677778888877777777777777766543
No 193
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=93.09 E-value=1.1 Score=40.07 Aligned_cols=66 Identities=17% Similarity=0.301 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 664 NLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQ 729 (913)
Q Consensus 664 eLKaKIdeLekEIEeL~kqRdEInaELqeLReERdELeSeLKkLVeEIkrLReEInEKrKEIesLQ 729 (913)
.|+..+..|+..++.+..+.......+..++.+|+....+|..+..++..++.++..++++++..+
T Consensus 2 ~Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~r 67 (69)
T PF14197_consen 2 KLEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEELR 67 (69)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 588999999999999999999999999999999999999999999999999999999999877654
No 194
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=92.73 E-value=4 Score=40.08 Aligned_cols=22 Identities=18% Similarity=0.329 Sum_probs=14.3
Q ss_pred CCCHHHHHHHHHHHHHHHhhcC
Q 002520 738 AISVDDIDGSIRNMEHRIAHET 759 (913)
Q Consensus 738 ~KSVEELQeEIkeLE~QIQheS 759 (913)
...++-|+..|+.++-.+.+.+
T Consensus 15 ~~~ve~L~s~lr~~E~E~~~l~ 36 (120)
T PF12325_consen 15 VQLVERLQSQLRRLEGELASLQ 36 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777776655544
No 195
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=92.71 E-value=2.8 Score=47.48 Aligned_cols=115 Identities=15% Similarity=0.205 Sum_probs=54.7
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 791 EVQLAFDQKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAY 870 (913)
Q Consensus 791 kIEqSLeEKenIqEQIKELKKEIDELReKIkkLekELEeLkkKIeEAqaELdELqeElrAaeEeRQEAyekIkELRkQ~D 870 (913)
.++..|.+|+.+.++.+++++....+.+.++.-++.+..|.+.+..+.....-++..+..-.....+......-|-.=+.
T Consensus 95 RL~~EL~~Rk~L~~~~~el~~~k~~l~~~~~~k~~~L~~l~~~L~~l~~a~~plq~~l~~~~~~~~~~~~~a~~LP~PLy 174 (355)
T PF09766_consen 95 RLEFELEQRKRLEEQLKELEQRKKKLQQENKKKKKFLDSLPPQLKSLKKAAKPLQEYLGLPHTKKRKQHELAELLPPPLY 174 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhCCCccchhhhHHHHHhCCccHH
Confidence 44445555555555555555555555555555555555555444444444444444443222222222222233333333
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHH
Q 002520 871 DKNQHFWKYKDDTKQANDLASKGDREALQHLCVNQ 905 (913)
Q Consensus 871 eLNsEFyq~Rr~l~kARdLAa~~dv~eLqelc~~Q 905 (913)
-+...+--|+......=++.-.|+.++.+.+...+
T Consensus 175 vLY~ql~ay~ea~~~~~~v~I~G~~~~A~~~~~~~ 209 (355)
T PF09766_consen 175 VLYSQLQAYQEAFDDSIDVEIVGDEEEAKAFERQQ 209 (355)
T ss_pred HHHHHHHHHHHHhcCCceEEEEecHHHHHHHHhcc
Confidence 44333333433333322344458888877776543
No 196
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=92.67 E-value=17 Score=39.10 Aligned_cols=35 Identities=11% Similarity=0.135 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 845 LGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKY 879 (913)
Q Consensus 845 qeElrAaeEeRQEAyekIkELRkQ~DeLNsEFyq~ 879 (913)
..+++.+-+....+|..+.++...+.+...-|-+.
T Consensus 240 ~~~r~~~~~~l~~a~~~y~el~~~l~eG~~FY~~L 274 (296)
T PF13949_consen 240 QKERESALQRLEAAYDAYKELSSNLEEGLKFYNDL 274 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 34555566666667777777777777766644433
No 197
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=92.66 E-value=2.7 Score=46.89 Aligned_cols=37 Identities=16% Similarity=0.207 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 816 LRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAAD 852 (913)
Q Consensus 816 LReKIkkLekELEeLkkKIeEAqaELdELqeElrAae 852 (913)
++.+...+.++++.|..+..++.+++.+++.+...+.
T Consensus 55 le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~ 91 (314)
T PF04111_consen 55 LEQEEEELLQELEELEKEREELDQELEELEEELEELD 91 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333344444333333333
No 198
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=92.66 E-value=20 Score=45.93 Aligned_cols=64 Identities=9% Similarity=0.117 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 669 IKAAQSKVDEKTRSRDAIRDDIQTIRASYKE--YAEKLEAAISDERSARESLKSKRQEIDSVQSRI 732 (913)
Q Consensus 669 IdeLekEIEeL~kqRdEInaELqeLReERdE--LeSeLKkLVeEIkrLReEInEKrKEIesLQSeL 732 (913)
|+.+-.+|+.|+..+.+.+.+.--.-++-.. ...+++.....|.++..++..+++++..+++.+
T Consensus 406 lKd~~~EIerLK~dl~AaReKnGvyisee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~ 471 (1041)
T KOG0243|consen 406 LKDLYEEIERLKRDLAAAREKNGVYISEERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELY 471 (1041)
T ss_pred HHHHHHHHHHHHHHHHHhHhhCceEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555554444433332222222 333444555566666666666666666665544
No 199
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=92.66 E-value=17 Score=39.09 Aligned_cols=34 Identities=6% Similarity=-0.049 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 853 EIRQEAYKHWQSLKKQAYDKNQHFWKYKDDTKQA 886 (913)
Q Consensus 853 EeRQEAyekIkELRkQ~DeLNsEFyq~Rr~l~kA 886 (913)
..|+..+..|......+.++...+-+-..+++..
T Consensus 241 ~~r~~~~~~l~~a~~~y~el~~~l~eG~~FY~~L 274 (296)
T PF13949_consen 241 KERESALQRLEAAYDAYKELSSNLEEGLKFYNDL 274 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 4444445555555555555555444444444333
No 200
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=92.65 E-value=28 Score=41.73 Aligned_cols=51 Identities=8% Similarity=0.014 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 826 ATQAVKKLHREESEKLKRLLGQFKAA-DEIRQEAYKHWQSLKKQAYDKNQHF 876 (913)
Q Consensus 826 ELEeLkkKIeEAqaELdELqeElrAa-eEeRQEAyekIkELRkQ~DeLNsEF 876 (913)
.++.|-..|..+.++..-++.+.+.. ..+-...+..+..+|.++..+.+..
T Consensus 420 KVd~LpqqI~~vs~Kc~~~Ksd~d~kIdtE~k~R~~eV~~vRqELa~lLssv 471 (531)
T PF15450_consen 420 KVDSLPQQIEEVSDKCDLHKSDSDTKIDTEGKAREREVGAVRQELATLLSSV 471 (531)
T ss_pred HHHhhhHHHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444433322 2333334566666666666655543
No 201
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=92.53 E-value=5.3 Score=43.12 Aligned_cols=68 Identities=9% Similarity=0.139 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 820 VIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKDDTKQAN 887 (913)
Q Consensus 820 IkkLekELEeLkkKIeEAqaELdELqeElrAaeEeRQEAyekIkELRkQ~DeLNsEFyq~Rr~l~kAR 887 (913)
|.++.++++.|..++...-++|..+.+....++.....+-....+.+.....++.+|...+..++..|
T Consensus 34 L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R 101 (230)
T PF10146_consen 34 LEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELR 101 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444444444444444444444444444544444444443
No 202
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=92.50 E-value=5.3 Score=40.91 Aligned_cols=63 Identities=13% Similarity=0.230 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 808 FLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAY 870 (913)
Q Consensus 808 ELKKEIDELReKIkkLekELEeLkkKIeEAqaELdELqeElrAaeEeRQEAyekIkELRkQ~D 870 (913)
..++++..+|++|+.+..+|+.|..-+.....++.+..+.++....++......|.+|..+..
T Consensus 81 P~RkEv~~vRkkID~vNreLkpl~~~cqKKEkEykealea~nEknkeK~~Lv~~L~eLv~eSE 143 (159)
T PF04949_consen 81 PMRKEVEMVRKKIDSVNRELKPLGQSCQKKEKEYKEALEAFNEKNKEKAQLVTRLMELVSESE 143 (159)
T ss_pred chHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 458888899999999999999998888888888888888888877777777777777665543
No 203
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=92.50 E-value=18 Score=45.06 Aligned_cols=22 Identities=18% Similarity=0.299 Sum_probs=16.0
Q ss_pred CCCCchHHHHHHHHHHHHHHHH
Q 002520 658 PRYDDENLREQIKAAQSKVDEK 679 (913)
Q Consensus 658 rRLdDPeLKaKIdeLekEIEeL 679 (913)
..+..|.|..+|++|..+++.-
T Consensus 453 ~~~~~~~L~e~IeKLk~E~d~e 474 (762)
T PLN03229 453 SKPSELALNEMIEKLKKEIDLE 474 (762)
T ss_pred CCCCChHHHHHHHHHHHHHHHH
Confidence 3456688888888888877653
No 204
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=92.45 E-value=2.8 Score=46.76 Aligned_cols=84 Identities=13% Similarity=0.129 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 802 IEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKD 881 (913)
Q Consensus 802 IqEQIKELKKEIDELReKIkkLekELEeLkkKIeEAqaELdELqeElrAaeEeRQEAyekIkELRkQ~DeLNsEFyq~Rr 881 (913)
+.++++.++++...+.+++..++.+...+..++..++.+...+..+-...-.......-.+....++++.+...|...+.
T Consensus 48 ~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~ 127 (314)
T PF04111_consen 48 LEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASN 127 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444444444444433333333344444444444444444444444
Q ss_pred HHHH
Q 002520 882 DTKQ 885 (913)
Q Consensus 882 ~l~k 885 (913)
.+.+
T Consensus 128 ~L~~ 131 (314)
T PF04111_consen 128 QLDR 131 (314)
T ss_dssp HHHC
T ss_pred HHHH
Confidence 4433
No 205
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=92.45 E-value=23 Score=40.13 Aligned_cols=200 Identities=12% Similarity=0.200 Sum_probs=89.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 663 ENLREQIKAAQSKVDEKTRSRD--------AIRDDIQTIRASYKEYAEKLEAAIS-DERSARESLKSKRQEIDSVQSRIN 733 (913)
Q Consensus 663 PeLKaKIdeLekEIEeL~kqRd--------EInaELqeLReERdELeSeLKkLVe-EIkrLReEInEKrKEIesLQSeLs 733 (913)
..|-++|..+.++.+.+...+. .+..++..++.++.++...|..-.. .+.++...|..+.++...++..|.
T Consensus 80 N~LlKkl~~l~keKe~L~~~~e~EEE~ltn~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~~~~q~~le 159 (310)
T PF09755_consen 80 NTLLKKLQQLKKEKETLALKYEQEEEFLTNDLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKEKSAKQEELE 159 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 4577777777777777743332 3555666667777777766654332 245555555555555555555444
Q ss_pred hccC--CCCHHHHHHHHHHHHHHHhhcCCCcHHHHH-HHHHHHHHHHHHHHhhhcccchhHHHHHH--HhHHHHHHHHHH
Q 002520 734 MMKN--AISVDDIDGSIRNMEHRIAHETLPLKEEKQ-IIREIKQLKQRREQISSSIGEHDEVQLAF--DQKDQIEEKMKF 808 (913)
Q Consensus 734 KLrS--~KSVEELQeEIkeLE~QIQheSLsLqEEKQ-lIrEISQLEkeRKdV~snIs~kakIEqSL--eEKenIqEQIKE 808 (913)
.++. ..=.-.|..++..|-.+++.--..|..||+ +...+ ..-. ..-.+-++.+...+ +--..+...|..
T Consensus 160 ~Lr~EKVdlEn~LE~EQE~lvN~L~Kqm~~l~~eKr~Lq~~l---~~~~---s~~~s~~d~~~~~~~~Dt~e~~~shI~~ 233 (310)
T PF09755_consen 160 RLRREKVDLENTLEQEQEALVNRLWKQMDKLEAEKRRLQEKL---EQPV---SAPPSPRDTVNVSEENDTAERLSSHIRS 233 (310)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---cccc---CCCCCcchHHhhcccCCchhHHHHHHHH
Confidence 4431 001111222222222222211114444444 22221 1110 00011011110000 011335566777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 809 LRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYD 871 (913)
Q Consensus 809 LKKEIDELReKIkkLekELEeLkkKIeEAqaELdELqeElrAaeEeRQEAyekIkELRkQ~De 871 (913)
++.+...||..+.....+...- ......+...++.+...+..+++...+..-.|-.++.+
T Consensus 234 Lr~EV~RLR~qL~~sq~e~~~k---~~~~~~eek~ireEN~rLqr~L~~E~erreal~R~lse 293 (310)
T PF09755_consen 234 LRQEVSRLRQQLAASQQEHSEK---MAQYLQEEKEIREENRRLQRKLQREVERREALCRHLSE 293 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777776666655433222 22222333445555555555555555544444444443
No 206
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=92.43 E-value=5.5 Score=40.39 Aligned_cols=26 Identities=15% Similarity=0.374 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 668 QIKAAQSKVDEKTRSRDAIRDDIQTI 693 (913)
Q Consensus 668 KIdeLekEIEeL~kqRdEInaELqeL 693 (913)
++..++..+..+.++++++...+...
T Consensus 82 e~~~~~~~l~~l~~el~~l~~~~~~~ 107 (191)
T PF04156_consen 82 ELSELQQQLQQLQEELDQLQERIQEL 107 (191)
T ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444443333333333333
No 207
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=92.32 E-value=18 Score=38.70 Aligned_cols=27 Identities=19% Similarity=0.391 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHhhcCCCcHHHHH
Q 002520 741 VDDIDGSIRNMEHRIAHETLPLKEEKQ 767 (913)
Q Consensus 741 VEELQeEIkeLE~QIQheSLsLqEEKQ 767 (913)
.+.++..+..|..++.+..-.+.+|+.
T Consensus 87 ~~~~~~~l~~L~~ri~~L~~~i~ee~~ 113 (247)
T PF06705_consen 87 QEQLQSRLDSLNDRIEALEEEIQEEKE 113 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555544444444444
No 208
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=92.10 E-value=20 Score=38.69 Aligned_cols=61 Identities=25% Similarity=0.230 Sum_probs=43.7
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 792 VQLAFDQKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAAD 852 (913)
Q Consensus 792 IEqSLeEKenIqEQIKELKKEIDELReKIkkLekELEeLkkKIeEAqaELdELqeElrAae 852 (913)
+.+.+.+++.+++.++.++..+..++....+++..+..|..+|.+++.+...+..+...+.
T Consensus 87 Ar~al~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~~~ak 147 (225)
T COG1842 87 AREALEEKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALKARKAAAK 147 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666777777777777777777777777777777777777777777777766665443
No 209
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=92.01 E-value=12 Score=44.16 Aligned_cols=15 Identities=13% Similarity=0.341 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHH
Q 002520 799 KDQIEEKMKFLRKEA 813 (913)
Q Consensus 799 KenIqEQIKELKKEI 813 (913)
|+.++=+++.++...
T Consensus 413 KetLqlelkK~k~ny 427 (527)
T PF15066_consen 413 KETLQLELKKIKANY 427 (527)
T ss_pred HHHHHHHHHHHhhhH
Confidence 344444444444333
No 210
>cd09234 V_HD-PTP_like Protein-interacting V-domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains. This family contains the V-shaped (V) domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23) and related domains. It belongs to the V_Alix_like superfamily which includes the V domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X/ also known as apoptosis-linked gene-2 interacting protein 1, AIP1), and related domains. HD_PTP interacts with the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in cell migration and endosomal trafficking. The related Alix V-domain (belonging to a different family in this superfamily) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. The Alix V-domain is also a dimerization domain. In addi
Probab=91.70 E-value=26 Score=39.26 Aligned_cols=52 Identities=10% Similarity=0.070 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 829 AVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYK 880 (913)
Q Consensus 829 eLkkKIeEAqaELdELqeElrAaeEeRQEAyekIkELRkQ~DeLNsEFyq~R 880 (913)
.+..++...+........++....+....+|..+.+++..+.+..+-|..-.
T Consensus 269 ~an~~f~~~r~~~~~~~~~Re~~l~~L~~ay~~y~el~~~l~eG~~FY~dL~ 320 (337)
T cd09234 269 EANAKYAPVRKALSETKQKRESTISSLIASYEAYEDLLKKSQKGIDFYKKLE 320 (337)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3333333333333445666666666666677777777777777666555444
No 211
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=91.67 E-value=4.7 Score=44.83 Aligned_cols=72 Identities=29% Similarity=0.405 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHhh
Q 002520 704 LEAAISDERSARESLKSKRQEIDSVQSRINMMKNAISVDDIDGSIRNMEHRIAHETLPLKEEKQIIREIKQLKQRREQIS 783 (913)
Q Consensus 704 LKkLVeEIkrLReEInEKrKEIesLQSeLsKLrS~KSVEELQeEIkeLE~QIQheSLsLqEEKQlIrEISQLEkeRKdV~ 783 (913)
+|-++++++.....+.+...||..|+.+|..++ .+=|.++=.+.|.|+. =|++++||+||+.-+..++
T Consensus 70 iRHLkakLkes~~~l~dRetEI~eLksQL~RMr----EDWIEEECHRVEAQLA--------LKEARkEIkQLkQvieTmr 137 (305)
T PF15290_consen 70 IRHLKAKLKESENRLHDRETEIDELKSQLARMR----EDWIEEECHRVEAQLA--------LKEARKEIKQLKQVIETMR 137 (305)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHH
Confidence 444444555555566777788888888888776 4556666666666642 2668899999999998766
Q ss_pred hccc
Q 002520 784 SSIG 787 (913)
Q Consensus 784 snIs 787 (913)
++++
T Consensus 138 ssL~ 141 (305)
T PF15290_consen 138 SSLA 141 (305)
T ss_pred hhhc
Confidence 6665
No 212
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=91.65 E-value=17 Score=36.95 Aligned_cols=18 Identities=11% Similarity=0.324 Sum_probs=9.2
Q ss_pred CCHHHHHHHHHHHHHHHh
Q 002520 739 ISVDDIDGSIRNMEHRIA 756 (913)
Q Consensus 739 KSVEELQeEIkeLE~QIQ 756 (913)
...+.|+-+...|..+|.
T Consensus 42 iDFeqLkien~~l~~kIe 59 (177)
T PF13870_consen 42 IDFEQLKIENQQLNEKIE 59 (177)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344555555555555543
No 213
>PRK10869 recombination and repair protein; Provisional
Probab=91.49 E-value=38 Score=40.68 Aligned_cols=45 Identities=16% Similarity=0.108 Sum_probs=26.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 663 ENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAA 707 (913)
Q Consensus 663 PeLKaKIdeLekEIEeL~kqRdEInaELqeLReERdELeSeLKkL 707 (913)
..+..++..+=.+...+.+++.++.........+++.++-+++++
T Consensus 153 ~~~~~~~~~~y~~~~~~~~~l~~l~~~~~~~~~~~d~l~fql~Ei 197 (553)
T PRK10869 153 TSLLQEMRAAYQLWHQSCRDLAQHQQQSQERAARKQLLQYQLKEL 197 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 345555555555556666666666665555566666666655555
No 214
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.49 E-value=36 Score=40.40 Aligned_cols=19 Identities=5% Similarity=0.010 Sum_probs=13.4
Q ss_pred CcCCCchhhhhhhcccccc
Q 002520 628 TPEGSTVDASESRNIGVEV 646 (913)
Q Consensus 628 ~~eesLKDaVEe~kE~Ld~ 646 (913)
.+-..+...++.|.....+
T Consensus 184 i~~sd~~~~ld~wg~~~~t 202 (521)
T KOG1937|consen 184 IPNSDPRKWLDQWGNSSHT 202 (521)
T ss_pred ccccchhhHHHHHhccCCc
Confidence 4456677778888777666
No 215
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=91.49 E-value=0.055 Score=65.40 Aligned_cols=15 Identities=13% Similarity=0.448 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhh
Q 002520 743 DIDGSIRNMEHRIAH 757 (913)
Q Consensus 743 ELQeEIkeLE~QIQh 757 (913)
+.+..|..|+.++..
T Consensus 227 e~e~~i~~Le~el~~ 241 (722)
T PF05557_consen 227 EAEQKIKELEAELKD 241 (722)
T ss_dssp ---------------
T ss_pred hHHHHHHHHHHHHHh
Confidence 334445555544433
No 216
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=91.48 E-value=53 Score=42.34 Aligned_cols=23 Identities=4% Similarity=-0.049 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 002520 862 WQSLKKQAYDKNQHFWKYKDDTK 884 (913)
Q Consensus 862 IkELRkQ~DeLNsEFyq~Rr~l~ 884 (913)
+..++.++..+...+-..+..+.
T Consensus 779 ~~~l~~~i~~~~~~~~~~~~~~~ 801 (1047)
T PRK10246 779 LTQLEQLKQNLENQRQQAQTLVT 801 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555554333
No 217
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=91.41 E-value=21 Score=37.62 Aligned_cols=28 Identities=21% Similarity=0.254 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 804 EKMKFLRKEADSLRENVIKAEAATQAVK 831 (913)
Q Consensus 804 EQIKELKKEIDELReKIkkLekELEeLk 831 (913)
.+++.++-+.+.|..+..++..+.++|.
T Consensus 100 k~l~~Lk~e~evL~qr~~kle~ErdeL~ 127 (201)
T PF13851_consen 100 KELKDLKWEHEVLEQRFEKLEQERDELY 127 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444433333333
No 218
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=91.37 E-value=6.2 Score=38.40 Aligned_cols=70 Identities=13% Similarity=0.130 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 810 RKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKY 879 (913)
Q Consensus 810 KKEIDELReKIkkLekELEeLkkKIeEAqaELdELqeElrAaeEeRQEAyekIkELRkQ~DeLNsEFyq~ 879 (913)
...+..|...+..++.....|.++.+.++..+..|+.+......+..+.-.+|.+++..++...-++.+.
T Consensus 15 ~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~eK~ak~~l 84 (107)
T PF09304_consen 15 QNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLEDEKQAKLEL 84 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444445555555566666666666666666665566666666665544444333
No 219
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=91.35 E-value=6.1 Score=43.65 Aligned_cols=73 Identities=7% Similarity=0.190 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 805 KMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFW 877 (913)
Q Consensus 805 QIKELKKEIDELReKIkkLekELEeLkkKIeEAqaELdELqeElrAaeEeRQEAyekIkELRkQ~DeLNsEFy 877 (913)
.|+....++..++..+..+..+-..|..+|++.+.+|...+.++..+...|=.-.+.+.++-.++..+...|.
T Consensus 170 ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~lY~~Y~ 242 (267)
T PF10234_consen 170 AIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKLYEIYV 242 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444444444444444444444444444444444444444443
No 220
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=91.22 E-value=16 Score=37.16 Aligned_cols=41 Identities=17% Similarity=0.268 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 826 ATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLK 866 (913)
Q Consensus 826 ELEeLkkKIeEAqaELdELqeElrAaeEeRQEAyekIkELR 866 (913)
+...+..++......+..++.++..+...+.+......+++
T Consensus 92 ~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~ 132 (177)
T PF13870_consen 92 ELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLR 132 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333333
No 221
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=91.10 E-value=3.8 Score=44.37 Aligned_cols=75 Identities=17% Similarity=0.162 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 801 QIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQH 875 (913)
Q Consensus 801 nIqEQIKELKKEIDELReKIkkLekELEeLkkKIeEAqaELdELqeElrAaeEeRQEAyekIkELRkQ~DeLNsE 875 (913)
.+++...++|..++++.+.-..+.++++.+..++++.+..|..+.-+...+++.+++.-....+|++.++++...
T Consensus 132 d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~ 206 (290)
T COG4026 132 DLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPG 206 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhccc
Confidence 344555566666666666666777777777777777778888888888888888887777777888888776653
No 222
>cd09235 V_Alix Middle V-domain of mammalian Alix and related domains are dimerization and protein interaction modules. This family contains the middle V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X) and related domains. It belongs to the V_Alix_like superfamily which includes the V-domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), is part of the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in membrane remodeling processes, including the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), the abscission reactions of mammalian cell division, and in apoptosis. The Alix V-domain is a dimerization domain, and contains a binding site, partially conserved in the
Probab=91.05 E-value=31 Score=38.82 Aligned_cols=37 Identities=8% Similarity=0.088 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 846 GQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKDD 882 (913)
Q Consensus 846 eElrAaeEeRQEAyekIkELRkQ~DeLNsEFyq~Rr~ 882 (913)
.+++...+.+..+|..+.++...+.+..+-|......
T Consensus 288 ~~re~~lq~L~~Ay~~y~el~~nl~eG~kFY~dL~~~ 324 (339)
T cd09235 288 NEREEVLKDLAAAYDAFMELTANLKEGTKFYNDLTEI 324 (339)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3455556666666777777777766666555544333
No 223
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=91.04 E-value=13 Score=45.89 Aligned_cols=56 Identities=14% Similarity=0.219 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 804 EKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAY 859 (913)
Q Consensus 804 EQIKELKKEIDELReKIkkLekELEeLkkKIeEAqaELdELqeElrAaeEeRQEAy 859 (913)
++|..++.++..++.+...+......+..++++....+..++.++..+.....+.+
T Consensus 241 ~~i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~ 296 (670)
T KOG0239|consen 241 KKIQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLVEKK 296 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555555555555555554444444444444444443333
No 224
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=90.94 E-value=4.8 Score=41.64 Aligned_cols=54 Identities=19% Similarity=0.207 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 804 EKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQE 857 (913)
Q Consensus 804 EQIKELKKEIDELReKIkkLekELEeLkkKIeEAqaELdELqeElrAaeEeRQE 857 (913)
.+|..++.++..++.++..+..++++..+-++.+++++..++-++..+++++++
T Consensus 116 ~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~ 169 (194)
T PF08614_consen 116 RRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRK 169 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666666666666666666655555555555555555555544443
No 225
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=90.86 E-value=54 Score=41.29 Aligned_cols=56 Identities=14% Similarity=0.194 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 670 KAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEI 725 (913)
Q Consensus 670 deLekEIEeL~kqRdEInaELqeLReERdELeSeLKkLVeEIkrLReEInEKrKEI 725 (913)
++++.++-.++++++.....--.+..+...+..-|+.-+.+++..|.+-..++.+.
T Consensus 20 ekae~e~~~lk~~l~~~~~~~~~~e~r~~hld~aLkec~~qlr~~ree~eq~i~~~ 75 (769)
T PF05911_consen 20 EKAEAEAASLKQQLEAATQQKLALEDRVSHLDGALKECMRQLRQVREEQEQKIHEA 75 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 45566666677777766666666666777777777777777777666655555443
No 226
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=90.84 E-value=3.4 Score=50.50 Aligned_cols=27 Identities=19% Similarity=0.434 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 802 IEEKMKFLRKEADSLRENVIKAEAATQ 828 (913)
Q Consensus 802 IqEQIKELKKEIDELReKIkkLekELE 828 (913)
++.+|..+..++..|+.++..++.+|+
T Consensus 508 L~~~~~~Le~e~~~L~~~~~~Le~~l~ 534 (722)
T PF05557_consen 508 LQKEIEELERENERLRQELEELESELE 534 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555544444443
No 227
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=90.81 E-value=42 Score=39.90 Aligned_cols=26 Identities=8% Similarity=0.204 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002520 866 KKQAYDKNQHFWKYKDDTKQANDLAS 891 (913)
Q Consensus 866 RkQ~DeLNsEFyq~Rr~l~kARdLAa 891 (913)
..++..+..+||-++..+...+....
T Consensus 336 e~e~~l~~~el~~~~ee~~~~~s~~~ 361 (511)
T PF09787_consen 336 EAELRLYYQELYHYREELSRQKSPLQ 361 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcChHH
Confidence 45556677777777776655554433
No 228
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=90.58 E-value=10 Score=38.34 Aligned_cols=68 Identities=15% Similarity=0.303 Sum_probs=37.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 663 ENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQS 730 (913)
Q Consensus 663 PeLKaKIdeLekEIEeL~kqRdEInaELqeLReERdELeSeLKkLVeEIkrLReEInEKrKEIesLQS 730 (913)
..|+..|..++.+++.....+..+.......++....+..+|..+...++++..++...+.+-..|..
T Consensus 20 dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k 87 (140)
T PF10473_consen 20 DSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDK 87 (140)
T ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555566555555555555555555555555555555555555555555555555554444433
No 229
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=90.40 E-value=36 Score=38.48 Aligned_cols=28 Identities=14% Similarity=0.079 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 835 REESEKLKRLLGQFKAADEIRQEAYKHW 862 (913)
Q Consensus 835 eEAqaELdELqeElrAaeEeRQEAyekI 862 (913)
+.+...|..++.+.--+.+.++.++.+-
T Consensus 217 es~eERL~QlqsEN~LLrQQLddA~~K~ 244 (305)
T PF14915_consen 217 ESLEERLSQLQSENMLLRQQLDDAHNKA 244 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444433
No 230
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=90.36 E-value=4.3 Score=40.87 Aligned_cols=21 Identities=19% Similarity=0.131 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 002520 861 HWQSLKKQAYDKNQHFWKYKD 881 (913)
Q Consensus 861 kIkELRkQ~DeLNsEFyq~Rr 881 (913)
.+..+.+.+......|.+.++
T Consensus 146 e~~~~~~~~~~~~k~w~kRKr 166 (169)
T PF07106_consen 146 EKEKLEKEYKKWRKEWKKRKR 166 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444443
No 231
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=90.16 E-value=45 Score=39.29 Aligned_cols=45 Identities=13% Similarity=0.361 Sum_probs=22.8
Q ss_pred CCCHHHHHHHHHHHHHHHhhcC--C-CcHHHHH-HHHHHHHHHHHHHHh
Q 002520 738 AISVDDIDGSIRNMEHRIAHET--L-PLKEEKQ-IIREIKQLKQRREQI 782 (913)
Q Consensus 738 ~KSVEELQeEIkeLE~QIQheS--L-sLqEEKQ-lIrEISQLEkeRKdV 782 (913)
..|++.|...|..+...++..+ + .|++-.. +-..+..|+.-.+++
T Consensus 240 V~sPeKL~~~leemk~~l~k~k~~~~~l~~K~~iL~ekv~~~qti~~e~ 288 (446)
T KOG4438|consen 240 VQSPEKLKEALEEMKDLLQKEKSAMVELQEKAKILEEKVTNLQTIEKEL 288 (446)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHH
Confidence 3566666666666666666555 3 3433333 334444444443333
No 232
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=90.14 E-value=23 Score=43.33 Aligned_cols=173 Identities=15% Similarity=0.152 Sum_probs=98.4
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcCC---CcHHHHH-HHHHHHHHHHHHHHhhhcccc-hhHHHHHHHhHHHHHHHHHHHHH
Q 002520 737 NAISVDDIDGSIRNMEHRIAHETL---PLKEEKQ-IIREIKQLKQRREQISSSIGE-HDEVQLAFDQKDQIEEKMKFLRK 811 (913)
Q Consensus 737 S~KSVEELQeEIkeLE~QIQheSL---sLqEEKQ-lIrEISQLEkeRKdV~snIs~-kakIEqSLeEKenIqEQIKELKK 811 (913)
++.+-++.|+++.+|+.--..+.| -|++.=. --..|..|+.-+...+.++.. ...+|+.+-.+..++.|-=.+-+
T Consensus 102 s~~~~~~yQerLaRLe~dkesL~LQvsvLteqVeaQgEKIrDLE~cie~kr~kLnatEEmLQqellsrtsLETqKlDLma 181 (861)
T KOG1899|consen 102 SCPEYPEYQERLARLEMDKESLQLQVSVLTEQVEAQGEKIRDLETCIEEKRNKLNATEEMLQQELLSRTSLETQKLDLMA 181 (861)
T ss_pred cCCcchHHHHHHHHHhcchhhheehHHHHHHHHHHhhhhHHHHHHHHHHHHhhhchHHHHHHHHHHhhhhHHHHHhHHHH
Confidence 457778888888888876555553 2444433 233455555555444444332 22445555556666665556666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 812 EADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQ-FKAADEIRQ-------EAYKHWQSLKKQAYDKNQHFWKYKDDT 883 (913)
Q Consensus 812 EIDELReKIkkLekELEeLkkKIeEAqaELdELqeE-lrAaeEeRQ-------EAyekIkELRkQ~DeLNsEFyq~Rr~l 883 (913)
++.+|+-++-.++++..+-.+++...+..+.++.+- .....++|- ..-..+.-|+.++.+++++.-... .
T Consensus 182 evSeLKLkltalEkeq~e~E~K~R~se~l~qevn~~kv~e~~~erlqye~klkstk~e~a~L~Eq~~eK~~e~~rl~--~ 259 (861)
T KOG1899|consen 182 EVSELKLKLTALEKEQNETEKKLRLSENLMQEVNQSKVGEVVQERLQYETKLKSTKGEMAPLREQRSEKNDEEMRLL--R 259 (861)
T ss_pred HHHHhHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHhhhhhHHHHHH--H
Confidence 777777666666666666666666666666555422 112222222 223556778888888888765433 3
Q ss_pred HHHHHhhhcCC---------HHHHHHHH--HHHHHhhhh
Q 002520 884 KQANDLASKGD---------REALQHLC--VNQVRSRTL 911 (913)
Q Consensus 884 ~kARdLAa~~d---------v~eLqelc--~~QVEkfm~ 911 (913)
..++-|++-|. +.+|+.++ +.|-++|++
T Consensus 260 ~lv~~~~~d~e~~~~rd~~lk~a~eslm~ane~kdr~ie 298 (861)
T KOG1899|consen 260 TLVQRLMADGEHKSLRDNTLKNALESLMRANEQKDRFIE 298 (861)
T ss_pred HHHHHHhhcccchhhHHHHHHHHHHHHHhhchhhhhHHH
Confidence 34555666555 45566554 445666654
No 233
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=89.91 E-value=50 Score=39.43 Aligned_cols=37 Identities=11% Similarity=0.035 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 839 EKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQH 875 (913)
Q Consensus 839 aELdELqeElrAaeEeRQEAyekIkELRkQ~DeLNsE 875 (913)
+.|...+.+....+..+.+.+..|..-.+++.+++..
T Consensus 147 e~l~~f~~~v~~~~~~~~~~~~~L~~qi~~L~~~n~~ 183 (475)
T PRK10361 147 EQLDGFRRQVQDSFGKEAQERHTLAHEIRNLQQLNAQ 183 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444444433
No 234
>PRK10884 SH3 domain-containing protein; Provisional
Probab=89.86 E-value=2.4 Score=44.87 Aligned_cols=11 Identities=9% Similarity=0.317 Sum_probs=4.3
Q ss_pred HHHHHHHHHHH
Q 002520 771 EIKQLKQRREQ 781 (913)
Q Consensus 771 EISQLEkeRKd 781 (913)
.+.+|++++.+
T Consensus 94 rlp~le~el~~ 104 (206)
T PRK10884 94 RVPDLENQVKT 104 (206)
T ss_pred HHHHHHHHHHH
Confidence 33344444433
No 235
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=89.74 E-value=20 Score=42.91 Aligned_cols=19 Identities=11% Similarity=0.099 Sum_probs=9.4
Q ss_pred CHHHHHHHHHHHHHHHhhc
Q 002520 740 SVDDIDGSIRNMEHRIAHE 758 (913)
Q Consensus 740 SVEELQeEIkeLE~QIQhe 758 (913)
++..+-++.+.+|.+++.+
T Consensus 199 ~y~~~~KelrdtN~q~~s~ 217 (596)
T KOG4360|consen 199 LYGDCVKELRDTNTQARSG 217 (596)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444555555555554443
No 236
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=89.71 E-value=24 Score=43.16 Aligned_cols=51 Identities=4% Similarity=0.122 Sum_probs=35.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 663 ENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERS 713 (913)
Q Consensus 663 PeLKaKIdeLekEIEeL~kqRdEInaELqeLReERdELeSeLKkLVeEIkr 713 (913)
|.++.++..|+-..+.|.-+..-+...+.+..++..+|+.-|...+.++..
T Consensus 107 ~~yQerLaRLe~dkesL~LQvsvLteqVeaQgEKIrDLE~cie~kr~kLna 157 (861)
T KOG1899|consen 107 PEYQERLARLEMDKESLQLQVSVLTEQVEAQGEKIRDLETCIEEKRNKLNA 157 (861)
T ss_pred hHHHHHHHHHhcchhhheehHHHHHHHHHHhhhhHHHHHHHHHHHHhhhch
Confidence 778888888888777777777777777777777777776655554444333
No 237
>KOG2273 consensus Membrane coat complex Retromer, subunit VPS5/SNX1, Sorting nexins, and related PX domain-containing proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.64 E-value=48 Score=38.86 Aligned_cols=49 Identities=10% Similarity=0.173 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 664 NLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARE 716 (913)
Q Consensus 664 eLKaKIdeLekEIEeL~kqRdEInaELqeLReERdELeSeLKkLVeEIkrLRe 716 (913)
+++.++..+...+..+.+.... +...+.......+++.+....+..+..
T Consensus 278 e~~~~i~~l~~~l~~l~~~~~~----~~~~~~~l~~~~~~~g~~~~~l~~~~~ 326 (503)
T KOG2273|consen 278 EKKEKIDKLEQQLKKLSKQVQR----LVKRRRELASNLAELGKALAQLSALEG 326 (503)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4444555555444443333322 333333333333444444444444444
No 238
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=89.64 E-value=29 Score=36.23 Aligned_cols=62 Identities=21% Similarity=0.214 Sum_probs=41.8
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 791 EVQLAFDQKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAAD 852 (913)
Q Consensus 791 kIEqSLeEKenIqEQIKELKKEIDELReKIkkLekELEeLkkKIeEAqaELdELqeElrAae 852 (913)
-+...+.++..++.++..++..++.+...+..++..+..+..++.+++.+...+..+...+.
T Consensus 85 LAr~al~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a~ 146 (221)
T PF04012_consen 85 LAREALQRKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARENAAK 146 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666667777777777777777777777777777777777777777666655443
No 239
>PLN03188 kinesin-12 family protein; Provisional
Probab=89.60 E-value=39 Score=44.41 Aligned_cols=35 Identities=17% Similarity=0.237 Sum_probs=22.5
Q ss_pred HHHHHHHHHhhcCCCcHHHHH-HHHHHHHHHHHHHH
Q 002520 747 SIRNMEHRIAHETLPLKEEKQ-IIREIKQLKQRREQ 781 (913)
Q Consensus 747 EIkeLE~QIQheSLsLqEEKQ-lIrEISQLEkeRKd 781 (913)
=|..|...|-.+++.-..||+ +.+|-+.|+.++++
T Consensus 1156 f~~alaae~s~l~~ereker~~~~~enk~l~~qlrd 1191 (1320)
T PLN03188 1156 FINALAAEISALKVEREKERRYLRDENKSLQAQLRD 1191 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhh
Confidence 355566655555554455555 77778888887776
No 240
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=89.58 E-value=6.4 Score=41.05 Aligned_cols=27 Identities=22% Similarity=0.288 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHhhhc--CCHHHHHHHHHH
Q 002520 878 KYKDDTKQANDLASK--GDREALQHLCVN 904 (913)
Q Consensus 878 q~Rr~l~kARdLAa~--~dv~eLqelc~~ 904 (913)
+.+..+..+++-|.+ -++-.|+.+|..
T Consensus 139 ~~~~~~~~~~~~anrwTDNI~~l~~~~~~ 167 (188)
T PF03962_consen 139 KLKEEIKIAKEAANRWTDNIFSLKSYLKK 167 (188)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 445555556665555 667777777765
No 241
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=89.57 E-value=17 Score=33.41 Aligned_cols=32 Identities=19% Similarity=0.173 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 002520 863 QSLKKQAYDKNQHFWKYKDDTKQANDLASKGD 894 (913)
Q Consensus 863 kELRkQ~DeLNsEFyq~Rr~l~kARdLAa~~d 894 (913)
..+..+...+....-+.+..+.-++.+...|+
T Consensus 75 ~~l~~q~~~l~~~l~~l~~~~~~~e~~l~~~~ 106 (127)
T smart00502 75 KVLEQQLESLTQKQEKLSHAINFTEEALNSGD 106 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 34444555555555555556666666555544
No 242
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=89.54 E-value=29 Score=38.83 Aligned_cols=14 Identities=29% Similarity=0.254 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHh
Q 002520 895 REALQHLCVNQVRS 908 (913)
Q Consensus 895 v~eLqelc~~QVEk 908 (913)
.++|++-.+-+||.
T Consensus 164 ~e~L~ekynkevee 177 (307)
T PF10481_consen 164 YEELQEKYNKEVEE 177 (307)
T ss_pred HHHHHHHHHHHHHH
Confidence 46777777777764
No 243
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=89.53 E-value=58 Score=39.63 Aligned_cols=41 Identities=10% Similarity=0.063 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 002520 854 IRQEAYKHWQSLKKQAYDKNQHFWKYKDDTKQANDLASKGD 894 (913)
Q Consensus 854 eRQEAyekIkELRkQ~DeLNsEFyq~Rr~l~kARdLAa~~d 894 (913)
.++....++..|.+++..+..+|.+.-..+.+.|.-+|++=
T Consensus 336 ~L~~~~~~~~~Le~~~~~l~~~~~~~A~~Ls~~R~~~A~~L 376 (557)
T COG0497 336 QLDNSEESLEALEKEVKKLKAELLEAAEALSAIRKKAAKEL 376 (557)
T ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445677888888888888888888888888888777543
No 244
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=89.39 E-value=37 Score=38.06 Aligned_cols=38 Identities=11% Similarity=0.086 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 801 QIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREES 838 (913)
Q Consensus 801 nIqEQIKELKKEIDELReKIkkLekELEeLkkKIeEAq 838 (913)
+|...|...|.++...|+++..|....-....+++...
T Consensus 137 ~L~~Kierrk~ElEr~rkRle~LqsiRP~~MdEyE~~E 174 (338)
T KOG3647|consen 137 ALGSKIERRKAELERTRKRLEALQSIRPAHMDEYEDCE 174 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 44455555555666666655555443333333333333
No 245
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=89.36 E-value=23 Score=34.74 Aligned_cols=60 Identities=17% Similarity=0.239 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 828 QAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKDDTKQAN 887 (913)
Q Consensus 828 EeLkkKIeEAqaELdELqeElrAaeEeRQEAyekIkELRkQ~DeLNsEFyq~Rr~l~kAR 887 (913)
..++.++..++..+..++.+.+.+...+...-.+|..-+..+..-....-..+.++..+.
T Consensus 62 ~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~QN 121 (132)
T PF07926_consen 62 QQLREELQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRIEDLNEQN 121 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444444444444444444444444443
No 246
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=89.26 E-value=53 Score=38.84 Aligned_cols=28 Identities=29% Similarity=0.440 Sum_probs=19.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 797 DQKDQIEEKMKFLRKEADSLRENVIKAE 824 (913)
Q Consensus 797 eEKenIqEQIKELKKEIDELReKIkkLe 824 (913)
.+|+++++-|.++++++.-+|..+-.+.
T Consensus 367 ~ekeatqELieelrkelehlr~~kl~~a 394 (502)
T KOG0982|consen 367 EEKEATQELIEELRKELEHLRRRKLVLA 394 (502)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3466777778888888777776655443
No 247
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=89.25 E-value=6.5 Score=39.65 Aligned_cols=88 Identities=16% Similarity=0.235 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q 002520 802 IEEKMKFLRKEADSLRENVIKAEAATQAVKKLH--REESEKLKRLLGQFKAADEIRQEAYKHWQ-SLKKQAYDKNQHFWK 878 (913)
Q Consensus 802 IqEQIKELKKEIDELReKIkkLekELEeLkkKI--eEAqaELdELqeElrAaeEeRQEAyekIk-ELRkQ~DeLNsEFyq 878 (913)
+..+|..++.++.+++..+..++.++..|.... .++...+.++..+...+..++........ -.-.++..+...|..
T Consensus 77 ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~~~~~vs~ee~~~~~~~~~~ 156 (169)
T PF07106_consen 77 LDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRSGSKPVSPEEKEKLEKEYKK 156 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Confidence 333444444444444444444444444443222 23333333333333333333322111111 123467777788888
Q ss_pred HHHHHHHHHHh
Q 002520 879 YKDDTKQANDL 889 (913)
Q Consensus 879 ~Rr~l~kARdL 889 (913)
++..|++=|-+
T Consensus 157 ~~k~w~kRKri 167 (169)
T PF07106_consen 157 WRKEWKKRKRI 167 (169)
T ss_pred HHHHHHHHHHH
Confidence 88887765443
No 248
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=89.11 E-value=32 Score=36.84 Aligned_cols=32 Identities=13% Similarity=0.180 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 800 DQIEEKMKFLRKEADSLRENVIKAEAATQAVK 831 (913)
Q Consensus 800 enIqEQIKELKKEIDELReKIkkLekELEeLk 831 (913)
..+..+++.++++++.++...+.+...+....
T Consensus 52 ~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~ 83 (251)
T PF11932_consen 52 QELLAEYRQLEREIENLEVYNEQLERQVASQE 83 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444433333333
No 249
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=88.74 E-value=6.9 Score=47.42 Aligned_cols=112 Identities=11% Similarity=0.351 Sum_probs=59.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHH
Q 002520 663 ENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKNAISVD 742 (913)
Q Consensus 663 PeLKaKIdeLekEIEeL~kqRdEInaELqeLReERdELeSeLKkLVeEIkrLReEInEKrKEIesLQSeLsKLrS~KSVE 742 (913)
.++...++.++.++..|...++++..++.++++++..+..+++ .-.+.+.++..+...|..|+.+|.... +.++
T Consensus 425 ~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~----~~~~~~rei~~~~~~I~~L~~~L~e~~--~~ve 498 (652)
T COG2433 425 KKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVR----DKVRKDREIRARDRRIERLEKELEEKK--KRVE 498 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhhHHHHHHHHHHHHHHHHHHHHH--HHHH
Confidence 3455555555555555555555555555555555555544433 223445556666666666666664333 5667
Q ss_pred HHHHHHHHHH--HHHhhcC--CCcHHHHH-HHHHHHHHHHHHH
Q 002520 743 DIDGSIRNME--HRIAHET--LPLKEEKQ-IIREIKQLKQRRE 780 (913)
Q Consensus 743 ELQeEIkeLE--~QIQheS--LsLqEEKQ-lIrEISQLEkeRK 780 (913)
+|..++.++. +.|.+.- +++..=++ -...|..++....
T Consensus 499 ~L~~~l~~l~k~~~lE~sG~g~pvk~ve~~t~~~Ie~~e~~~g 541 (652)
T COG2433 499 ELERKLAELRKMRKLELSGKGTPVKVVEKLTLEAIEEAEEEYG 541 (652)
T ss_pred HHHHHHHHHHHHHhhhhcCCCcceehhhhhhHHHHHhHHHhhc
Confidence 7777666665 3333332 33333333 4555666655543
No 250
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=88.62 E-value=27 Score=34.59 Aligned_cols=80 Identities=19% Similarity=0.348 Sum_probs=51.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 795 AFDQKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQ 874 (913)
Q Consensus 795 SLeEKenIqEQIKELKKEIDELReKIkkLekELEeLkkKIeEAqaELdELqeElrAaeEeRQEAyekIkELRkQ~DeLNs 874 (913)
.+..++.+..++..+..++..+...+..+...+..+..++..+..+...+..+++.+.......-+.+.++...+.....
T Consensus 50 ~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~~t 129 (151)
T PF11559_consen 50 DMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQRKT 129 (151)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666677777777777777777777777777776666666666666666666666665555555555544444333
No 251
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=88.58 E-value=37 Score=36.14 Aligned_cols=69 Identities=17% Similarity=0.294 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCC-CCHHHHHHHHHHHHHHHhhcCC----CcHHH-HHHHHHHHHHHHHH
Q 002520 711 ERSARESLKSKRQEIDSVQSRINMMKNA-ISVDDIDGSIRNMEHRIAHETL----PLKEE-KQIIREIKQLKQRR 779 (913)
Q Consensus 711 IkrLReEInEKrKEIesLQSeLsKLrS~-KSVEELQeEIkeLE~QIQheSL----sLqEE-KQlIrEISQLEkeR 779 (913)
+..++..+....+.+..|+.+|..+..| .--+..+.+|..|+..+..... .+.+- -+++.+=..|+++.
T Consensus 49 ~~~Lq~qLlq~~k~~~~l~~eLq~l~~~~~~k~~qe~eI~~Le~e~~~~~~e~~~~l~~~~~qfl~EK~~LEke~ 123 (206)
T PF14988_consen 49 TSELQDQLLQKEKEQAKLQQELQALKEFRRLKEQQEREIQTLEEELEKMRAEHAEKLQEAESQFLQEKARLEKEA 123 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555555444332 2233444556666665555441 22222 22555555555554
No 252
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=88.49 E-value=59 Score=38.39 Aligned_cols=17 Identities=0% Similarity=-0.017 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 002520 861 HWQSLKKQAYDKNQHFW 877 (913)
Q Consensus 861 kIkELRkQ~DeLNsEFy 877 (913)
.+.+.+.-+.+....||
T Consensus 314 ~lsEsesslemdeery~ 330 (552)
T KOG2129|consen 314 MLSESESSLEMDEERYL 330 (552)
T ss_pred HhhhhhHHHHHHHHHHH
Confidence 33344444444444444
No 253
>cd08915 V_Alix_like Protein-interacting V-domain of mammalian Alix and related domains. This superfamily contains the V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Bro1, and Rim20 all interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. The Alix V-domain contains
Probab=88.32 E-value=47 Score=37.04 Aligned_cols=36 Identities=17% Similarity=0.219 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 844 LLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKY 879 (913)
Q Consensus 844 LqeElrAaeEeRQEAyekIkELRkQ~DeLNsEFyq~ 879 (913)
...++....+....+|..+.+++..+.+..+-|...
T Consensus 289 ~~~~r~~~l~~L~~ay~~y~el~~~l~eG~~FY~dL 324 (342)
T cd08915 289 SLDPREEALQDLEASYKKYLELKENLNEGSKFYNDL 324 (342)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 344555666666667777777777766665554433
No 254
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=88.29 E-value=8.4 Score=39.85 Aligned_cols=59 Identities=15% Similarity=0.268 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 806 MKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQS 864 (913)
Q Consensus 806 IKELKKEIDELReKIkkLekELEeLkkKIeEAqaELdELqeElrAaeEeRQEAyekIkE 864 (913)
+..++.++..+...+......++.|+.++..++-.++.+..+++.+..+-++.++.|-.
T Consensus 125 ~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~ 183 (194)
T PF08614_consen 125 LAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERWMQ 183 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333344444444444444444444444444444444444433
No 255
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=88.29 E-value=13 Score=43.78 Aligned_cols=27 Identities=26% Similarity=0.256 Sum_probs=11.7
Q ss_pred CCCccccccccccccCC--CCCCCCCCCh
Q 002520 587 KTCPEVKENRGIQLTGG--EDGDRTFQDV 613 (913)
Q Consensus 587 ~~~~~~~~~~~~~~~~~--~~~~RsFede 613 (913)
.|||---|.----.+|= --|.-+|...
T Consensus 176 PTCpVCLERMD~s~~gi~t~~c~Hsfh~~ 204 (493)
T KOG0804|consen 176 PTCPVCLERMDSSTTGILTILCNHSFHCS 204 (493)
T ss_pred CCcchhHhhcCccccceeeeecccccchH
Confidence 46775544322222110 2355556555
No 256
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=88.23 E-value=25 Score=36.69 Aligned_cols=15 Identities=13% Similarity=0.350 Sum_probs=6.5
Q ss_pred CHHHHHHHHHHHHHH
Q 002520 740 SVDDIDGSIRNMEHR 754 (913)
Q Consensus 740 SVEELQeEIkeLE~Q 754 (913)
-.+++...+..++.+
T Consensus 59 ~~~~~~~~~~~~~~~ 73 (221)
T PF04012_consen 59 KLDEAEEEAEKWEKQ 73 (221)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444443
No 257
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=87.92 E-value=42 Score=36.02 Aligned_cols=33 Identities=15% Similarity=0.136 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 839 EKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYD 871 (913)
Q Consensus 839 aELdELqeElrAaeEeRQEAyekIkELRkQ~De 871 (913)
.........|......=++.-+++-.+.+++..
T Consensus 152 ~~~e~q~~~Fe~ER~~W~eEKekVi~YQkQLQ~ 184 (202)
T PF06818_consen 152 QRREEQRSSFEQERRTWQEEKEKVIRYQKQLQQ 184 (202)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444433344443333334444555555555554
No 258
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=87.88 E-value=49 Score=41.56 Aligned_cols=27 Identities=22% Similarity=0.144 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 825 AATQAVKKLHREESEKLKRLLGQFKAA 851 (913)
Q Consensus 825 kELEeLkkKIeEAqaELdELqeElrAa 851 (913)
-++..|+-+++++-..++.++-.+.++
T Consensus 494 ~e~~rik~ev~eal~~~k~~q~kLe~s 520 (861)
T PF15254_consen 494 IETTRIKIEVEEALVNVKSLQFKLEAS 520 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 344444444444444444444444433
No 259
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=87.69 E-value=35 Score=38.01 Aligned_cols=102 Identities=17% Similarity=0.240 Sum_probs=57.9
Q ss_pred CHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 002520 740 SVDDIDGSIRNMEHRIAHETLPLKEEKQIIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKFLRKEADSLREN 819 (913)
Q Consensus 740 SVEELQeEIkeLE~QIQheSLsLqEEKQlIrEISQLEkeRKdV~snIs~kakIEqSLeEKenIqEQIKELKKEIDELReK 819 (913)
|..+|...+.-+.+ +....+.+.|=|..+.+|......+.. -+....+++.....++..+.+++.+.++
T Consensus 147 S~~dl~e~~~~l~D-Lesa~vkV~WLR~~L~Ei~Ea~e~~~~----------~~~~e~eke~~~r~l~~~~~ELe~~~Ee 215 (269)
T PF05278_consen 147 SESDLKEMIATLKD-LESAKVKVDWLRSKLEEILEAKEIYDQ----------HETREEEKEEKDRKLELKKEELEELEEE 215 (269)
T ss_pred hHHHHHHHHHHHHH-HHHcCcchHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444433 222346777777777776655444332 1112234555556677777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 820 VIKAEAATQAVKKLHREESEKLKRLLGQFKAAD 852 (913)
Q Consensus 820 IkkLekELEeLkkKIeEAqaELdELqeElrAae 852 (913)
+.+.++++.+++.++.+.+.+|..+..+...+.
T Consensus 216 L~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~ 248 (269)
T PF05278_consen 216 LKQKEKEVKEIKERITEMKGRLGELEMESTRLS 248 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777666666666665555444433
No 260
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=87.58 E-value=48 Score=36.30 Aligned_cols=46 Identities=11% Similarity=0.125 Sum_probs=21.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 797 DQKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLK 842 (913)
Q Consensus 797 eEKenIqEQIKELKKEIDELReKIkkLekELEeLkkKIeEAqaELd 842 (913)
.+|..++..++.++.-+...+.....+..+++.+..+++.+.+.++
T Consensus 156 k~R~~~Q~~le~k~e~l~k~~~dr~~~~~ev~~~e~kve~a~~~~k 201 (243)
T cd07666 156 KRRDQIQAELDSKVEALANKKADRDLLKEEIEKLEDKVECANNALK 201 (243)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444433333333344334555566666666666654433
No 261
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=87.20 E-value=20 Score=42.33 Aligned_cols=53 Identities=6% Similarity=0.190 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 675 KVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDS 727 (913)
Q Consensus 675 EIEeL~kqRdEInaELqeLReERdELeSeLKkLVeEIkrLReEInEKrKEIes 727 (913)
+++..++.......++..++.+...+++.-+.....+.+++..+++..++++.
T Consensus 348 qlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~ 400 (493)
T KOG0804|consen 348 QLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKE 400 (493)
T ss_pred HHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444442222233344444444444444433
No 262
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=87.13 E-value=88 Score=38.87 Aligned_cols=33 Identities=18% Similarity=0.213 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 842 KRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQ 874 (913)
Q Consensus 842 dELqeElrAaeEeRQEAyekIkELRkQ~DeLNs 874 (913)
..|..-...+...+.+..++++.++.+...+++
T Consensus 229 ~~L~~~v~~l~~~k~qr~~kl~~l~~~~~~LWn 261 (660)
T KOG4302|consen 229 DRLDKMVKKLKEEKKQRLQKLQDLRTKLLELWN 261 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444445555556666666666666555
No 263
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=87.12 E-value=33 Score=43.58 Aligned_cols=46 Identities=9% Similarity=0.135 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 665 LREQIKAAQSKVDEKTRSRDA-----IRDDIQTIRASYKEYAEKLEAAISD 710 (913)
Q Consensus 665 LKaKIdeLekEIEeL~kqRdE-----InaELqeLReERdELeSeLKkLVeE 710 (913)
....+..++.+++.+...+-. +.++++.++.+-..+..+++++..+
T Consensus 328 ~~~~~~~lK~ql~~l~~ell~~~~~~~~~ei~sl~~e~~~l~~~~d~~~~e 378 (913)
T KOG0244|consen 328 KSFEMLKLKAQLEPLQVELLSKAGDELDAEINSLPFENVTLEETLDALLQE 378 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccchhHHhhhhhhhhhhhhhHHHHhcc
Confidence 334444444444444444433 3356666776666666666666544
No 264
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=87.05 E-value=56 Score=36.47 Aligned_cols=44 Identities=14% Similarity=0.103 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002520 848 FKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKDDTKQANDLAS 891 (913)
Q Consensus 848 lrAaeEeRQEAyekIkELRkQ~DeLNsEFyq~Rr~l~kARdLAa 891 (913)
+....++++.++++..=|-.++++....+..-+|+-..||||..
T Consensus 135 leDfeqrLnqAIErnAfLESELdEke~llesvqRLkdEardlrq 178 (333)
T KOG1853|consen 135 LEDFEQRLNQAIERNAFLESELDEKEVLLESVQRLKDEARDLRQ 178 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677777777777888888888888888888888888754
No 265
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=86.98 E-value=4 Score=44.21 Aligned_cols=63 Identities=10% Similarity=0.159 Sum_probs=30.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 663 ENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEI 725 (913)
Q Consensus 663 PeLKaKIdeLekEIEeL~kqRdEInaELqeLReERdELeSeLKkLVeEIkrLReEInEKrKEI 725 (913)
..++.+++.++++.+.+.+++..+.+++.+.+.+...++.++..+-+.++++-.++.++++..
T Consensus 138 ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~ 200 (290)
T COG4026 138 EELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRW 200 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHH
Confidence 445555555555555555555555555555444444444444444444444444444444433
No 266
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=86.70 E-value=15 Score=41.98 Aligned_cols=47 Identities=21% Similarity=0.339 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 686 IRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRI 732 (913)
Q Consensus 686 InaELqeLReERdELeSeLKkLVeEIkrLReEInEKrKEIesLQSeL 732 (913)
+...+.++..+-+.++++|..++.+.+..+.++.+.+.+.+.++...
T Consensus 250 i~~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V 296 (359)
T PF10498_consen 250 ISKTLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEGV 296 (359)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 34444455556666666677777666666666666666655544433
No 267
>PF15294 Leu_zip: Leucine zipper
Probab=86.61 E-value=11 Score=41.91 Aligned_cols=50 Identities=10% Similarity=0.154 Sum_probs=41.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 663 ENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDER 712 (913)
Q Consensus 663 PeLKaKIdeLekEIEeL~kqRdEInaELqeLReERdELeSeLKkLVeEIk 712 (913)
+-|..+|..|+.+-+.++.++..+.........++..+..+|+.++....
T Consensus 128 ~ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~~~~ 177 (278)
T PF15294_consen 128 ELLNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQDEQG 177 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55888999999998888888888888888888888888888888876433
No 268
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=86.56 E-value=41 Score=37.51 Aligned_cols=172 Identities=10% Similarity=0.202 Sum_probs=0.0
Q ss_pred ceeeccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHH
Q 002520 651 FYFLVKVPRYDDENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISD-------------ERSARES 717 (913)
Q Consensus 651 fYf~Vr~rRLdDPeLKaKIdeLekEIEeL~kqRdEInaELqeLReERdELeSeLKkLVeE-------------IkrLReE 717 (913)
+| |.--+.....|+.+...+...-.-+..++..-..+++...+...++.+++.+.+.. +.+++.+
T Consensus 108 d~--i~nLk~se~~lkqQ~~~a~RrE~ilv~rlA~kEQEmqe~~sqi~~lK~qq~Ps~~qlR~~llDPAinl~F~rlK~e 185 (330)
T KOG2991|consen 108 DD--ITNLKESEEKLKQQQQEAARRENILVMRLATKEQEMQECTSQIQYLKQQQQPSVAQLRSTLLDPAINLFFLRLKGE 185 (330)
T ss_pred HH--HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHhhChHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHhccCC-----------CCHHHHHHHHHHHHHHHhhcCC-CcHHHHH-HHHHHHHHHHHHHHhhh
Q 002520 718 LKSKRQEIDSVQSRINMMKNA-----------ISVDDIDGSIRNMEHRIAHETL-PLKEEKQ-IIREIKQLKQRREQISS 784 (913)
Q Consensus 718 InEKrKEIesLQSeLsKLrS~-----------KSVEELQeEIkeLE~QIQheSL-sLqEEKQ-lIrEISQLEkeRKdV~s 784 (913)
+......|+.++.+|+-.. | ---.-|+.+=.+|.++...++| .|.-|-- -...-..|+..-..+-.
T Consensus 186 le~tk~Klee~QnelsAwk-FTPdS~tGK~LMAKCR~L~qENeElG~q~s~Gria~Le~eLAmQKs~seElkssq~eL~d 264 (330)
T KOG2991|consen 186 LEQTKDKLEEAQNELSAWK-FTPDSKTGKMLMAKCRTLQQENEELGHQASEGRIAELEIELAMQKSQSEELKSSQEELYD 264 (330)
T ss_pred HHHHHHHHHHHHhhhheee-ecCCCcchHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHHhhHHHHHHhHHHHHH
Q ss_pred cccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 785 SIGEHDEVQLAFDQKDQIEEKMKFLRKEADSLRENVIKAEAATQAVK 831 (913)
Q Consensus 785 nIs~kakIEqSLeEKenIqEQIKELKKEIDELReKIkkLekELEeLk 831 (913)
++. ++. ...+..+..|=.+..++.+-|++|+.+.+.+.-++
T Consensus 265 fm~---eLd---edVEgmqsTiliLQq~Lketr~~Iq~l~k~~~q~s 305 (330)
T KOG2991|consen 265 FME---ELD---EDVEGMQSTILILQQKLKETRKEIQRLKKGLEQVS 305 (330)
T ss_pred HHH---HHH---HHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
No 269
>PTZ00440 reticulocyte binding protein 2-like protein; Provisional
Probab=86.29 E-value=1.5e+02 Score=42.13 Aligned_cols=259 Identities=12% Similarity=0.155 Sum_probs=0.0
Q ss_pred hhhhhcccccccc-CcceeeccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH
Q 002520 636 ASESRNIGVEVVK-QPFYFLVKVPRYDDENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAA----ISD 710 (913)
Q Consensus 636 aVEe~kE~Ld~LR-r~fYf~Vr~rRLdDPeLKaKIdeLekEIEeL~kqRdEInaELqeLReERdELeSeLKkL----VeE 710 (913)
.+.+.++-|..+. .-+| .....+..+.+|..++..+..+.+..+....++..++..-..+....+.- ...
T Consensus 1050 ~ln~ik~KL~~~~~neD~-----kk~~N~~~~~eI~~i~~~i~~l~~~Id~~~~kl~~iK~~s~~~~~e~k~ek~~~~e~ 1124 (2722)
T PTZ00440 1050 LLEKMKTKLSSFHFNIDI-----KKYKNPKIKEEIKLLEEKVEALLKKIDENKNKLIEIKNKSHEHVVNADKEKNKQTEH 1124 (2722)
T ss_pred hHHHHHHHHhcccchhHh-----hhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccchhHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHHHHhhcCC-CcHHHHH----HHHHHHHHHHHHHHhhh
Q 002520 711 ERSARESLKSKRQEIDSVQSRINMMKN-AISVDDIDGSIRNMEHRIAHETL-PLKEEKQ----IIREIKQLKQRREQISS 784 (913)
Q Consensus 711 IkrLReEInEKrKEIesLQSeLsKLrS-~KSVEELQeEIkeLE~QIQheSL-sLqEEKQ----lIrEISQLEkeRKdV~s 784 (913)
...-+..+.+.-.+|..+..+|...-. -.+.++++.-.=+.+.-+-+.=+ .+.+||+ .+.+|..+...+..+..
T Consensus 1125 ~n~~kk~ie~IYe~m~kl~~El~e~~~~~~~l~~v~~iel~Yek~li~~~l~~I~~Ek~Ka~~~ie~iesyk~~Id~ikk 1204 (2722)
T PTZ00440 1125 YNKKKKSLEKIYKQMEKTLKELENMNLEDITLNEVNEIEIEYERILIDHIVEQINNEAKKSKTIMEEIESYKKDIDQVKK 1204 (2722)
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred cccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Q 002520 785 SIGEHDEVQLAFDQKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESE--KLKRLLGQFKAADEIRQEAYKHW 862 (913)
Q Consensus 785 nIs~kakIEqSLeEKenIqEQIKELKKEIDELReKIkkLekELEeLkkKIeEAqa--ELdELqeElrAaeEeRQEAyekI 862 (913)
... ...+...-....+.+........+.|..+...--.|..+...... ++..+..++..--+..+..+..+
T Consensus 1205 k~~-------~~~~~~~~~~~y~~~~~~a~~~~~~I~~i~~~S~~l~~~a~~~~~i~eik~Ik~~v~~nlq~~~~~nn~i 1277 (2722)
T PTZ00440 1205 NMS-------KERNDHLTTFEYNAYYDKATASYENIEELTTEAKGLKGEANRSTNVDELKEIKLQVFSYLQQVIKENNKM 1277 (2722)
T ss_pred cCC-------hhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhhHHH
Q ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHhhhcCCHHHHHHHHHHHHHh
Q 002520 863 QSLKKQAYDKNQHFW--KYKDDTKQANDLASKGDREALQHLCVNQVRS 908 (913)
Q Consensus 863 kELRkQ~DeLNsEFy--q~Rr~l~kARdLAa~~dv~eLqelc~~QVEk 908 (913)
...+.++..++.=+. .+...+......++ +....-.++..|..+
T Consensus 1278 ~~~L~~ikn~~~iL~s~n~~~I~~~I~~~t~--~~e~~~~~~k~El~K 1323 (2722)
T PTZ00440 1278 ENALHEIKNMYEFLISIDSEKILKEILNSTK--KAEEFSNDAKKELEK 1323 (2722)
T ss_pred HHHHHHHHHHHHHHHHccHHHHHHHHHHHHH--HHHHHHHHHHHHHhh
No 270
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=86.22 E-value=29 Score=42.00 Aligned_cols=28 Identities=4% Similarity=-0.063 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002520 864 SLKKQAYDKNQHFWKYKDDTKQANDLAS 891 (913)
Q Consensus 864 ELRkQ~DeLNsEFyq~Rr~l~kARdLAa 891 (913)
+++.-.......|.+.+..+...+..++
T Consensus 289 ~i~~~~~~~~~~y~~~~p~i~~~~~~~~ 316 (555)
T TIGR03545 289 EIRKYLQKFLKYYDQAEPLLNKSKKEPK 316 (555)
T ss_pred HHHHHHHHHHHHHHHHhHhhccchhccc
Confidence 4445555666666677777766654433
No 271
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []. This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=86.15 E-value=44 Score=36.44 Aligned_cols=57 Identities=19% Similarity=0.351 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 664 NLREQIKAAQSKVDEKTRSRDAIRDDIQTI--RASYKEYAEKLEAAISDERSARESLKS 720 (913)
Q Consensus 664 eLKaKIdeLekEIEeL~kqRdEInaELqeL--ReERdELeSeLKkLVeEIkrLReEInE 720 (913)
+|..+|+..-+.+.+-....+.+-.++... .+.+..+++.|++-+-++.|+|..|+.
T Consensus 5 KLQ~Eid~~lKkv~EG~~~F~~i~~K~~~~~n~~QKEK~E~DLKkEIKKLQR~RdQIK~ 63 (233)
T PF04065_consen 5 KLQQEIDRTLKKVQEGVEEFDEIYEKVESATNQNQKEKLEADLKKEIKKLQRLRDQIKT 63 (233)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777777777766666666665555542 345566666666665555666555553
No 272
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=86.12 E-value=41 Score=39.60 Aligned_cols=23 Identities=17% Similarity=0.302 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 002520 668 QIKAAQSKVDEKTRSRDAIRDDI 690 (913)
Q Consensus 668 KIdeLekEIEeL~kqRdEInaEL 690 (913)
.+..+...++.++..++.....+
T Consensus 86 ~~~~l~~~i~~lk~~l~~~~~~~ 108 (424)
T PF03915_consen 86 GIGGLSEEIEELKQELDEQQETI 108 (424)
T ss_dssp -----------------------
T ss_pred chhHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444443333
No 273
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=86.10 E-value=48 Score=37.24 Aligned_cols=25 Identities=28% Similarity=0.553 Sum_probs=15.0
Q ss_pred CcHHHHH-HHHHHHHHHHHHHHhhhc
Q 002520 761 PLKEEKQ-IIREIKQLKQRREQISSS 785 (913)
Q Consensus 761 sLqEEKQ-lIrEISQLEkeRKdV~sn 785 (913)
.|..|.+ ++..-..|++.|..+..-
T Consensus 64 ~LkREnq~l~e~c~~lek~rqKlshd 89 (307)
T PF10481_consen 64 ALKRENQSLMESCENLEKTRQKLSHD 89 (307)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHhhHH
Confidence 5566666 666666777776654333
No 274
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=85.91 E-value=17 Score=37.63 Aligned_cols=51 Identities=16% Similarity=0.242 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 808 FLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEA 858 (913)
Q Consensus 808 ELKKEIDELReKIkkLekELEeLkkKIeEAqaELdELqeElrAaeEeRQEA 858 (913)
.++.+...++..+.++..+++.|.+++..+..++..+++.++.+...++++
T Consensus 101 ~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~RA 151 (161)
T TIGR02894 101 ALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDRA 151 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444455555444444455555555555555555544
No 275
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=85.82 E-value=50 Score=40.19 Aligned_cols=24 Identities=13% Similarity=0.137 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 858 AYKHWQSLKKQAYDKNQHFWKYKD 881 (913)
Q Consensus 858 AyekIkELRkQ~DeLNsEFyq~Rr 881 (913)
.-..+..++.++...-..+-+.|+
T Consensus 347 Le~~~~~l~~~~~~~A~~Ls~~R~ 370 (557)
T COG0497 347 LEKEVKKLKAELLEAAEALSAIRK 370 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555544
No 276
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=85.76 E-value=38 Score=41.74 Aligned_cols=37 Identities=16% Similarity=0.213 Sum_probs=20.7
Q ss_pred Cchhhhhhhccccccc-c--CcceeeccCCCCCchHHHHHH
Q 002520 632 STVDASESRNIGVEVV-K--QPFYFLVKVPRYDDENLREQI 669 (913)
Q Consensus 632 sLKDaVEe~kE~Ld~L-R--r~fYf~Vr~rRLdDPeLKaKI 669 (913)
.....++.+...|.+. + .+.++-++|.. .||.+-+.|
T Consensus 206 ~~~~~~~~l~~~l~V~~~~~~s~ii~Is~~~-~dP~~Aa~i 245 (726)
T PRK09841 206 TELEAINALQETFTVSERSKESGMLELTMTG-DDPQLITRI 245 (726)
T ss_pred CHHHHHHHHHhcCeEEecCCCCCeEEEEEeC-CCHHHHHHH
Confidence 3446666677777752 2 44442344444 567777666
No 277
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=85.68 E-value=54 Score=34.98 Aligned_cols=17 Identities=0% Similarity=0.341 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHhh
Q 002520 741 VDDIDGSIRNMEHRIAH 757 (913)
Q Consensus 741 VEELQeEIkeLE~QIQh 757 (913)
..+...++..++.++..
T Consensus 122 l~~~~~~l~ei~~~L~~ 138 (240)
T PF12795_consen 122 LSEARQRLQEIRNQLQN 138 (240)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 34444444455554444
No 278
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=85.58 E-value=20 Score=35.51 Aligned_cols=10 Identities=20% Similarity=0.647 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 002520 682 SRDAIRDDIQ 691 (913)
Q Consensus 682 qRdEInaELq 691 (913)
.++.+...+.
T Consensus 53 ~~e~l~~~~~ 62 (151)
T PF11559_consen 53 QREDLSDKLR 62 (151)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 279
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=85.58 E-value=65 Score=40.00 Aligned_cols=51 Identities=24% Similarity=0.181 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 827 TQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFW 877 (913)
Q Consensus 827 LEeLkkKIeEAqaELdELqeElrAaeEeRQEAyekIkELRkQ~DeLNsEFy 877 (913)
+..|+.++..++..+..+..+.....+..++.+..+..+..++...+..|+
T Consensus 243 i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~ 293 (670)
T KOG0239|consen 243 IQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLV 293 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333444444444444444555555555555444444444444
No 280
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=85.44 E-value=9.7 Score=45.82 Aligned_cols=52 Identities=15% Similarity=0.231 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 809 LRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQ 863 (913)
Q Consensus 809 LKKEIDELReKIkkLekELEeLkkKIeEAqaELdELqeElrAaeEeRQEAyekIk 863 (913)
.++++++|+++++...+.++.++.+++.. ...++.++.++.+..++.|+.|.
T Consensus 217 ~~~e~d~lk~e~~~~~~~i~~~~~~l~~~---~~~~~~~~~~lk~ap~~D~~~L~ 268 (555)
T TIGR03545 217 IKEEFDKLKKEGKADKQKIKSAKNDLQND---KKQLKADLAELKKAPQNDLKRLE 268 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHhccHhHHHHHH
Confidence 34444444444444444444444322222 23444555555555555555555
No 281
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=85.44 E-value=43 Score=33.65 Aligned_cols=25 Identities=32% Similarity=0.363 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 814 DSLRENVIKAEAATQAVKKLHREES 838 (913)
Q Consensus 814 DELReKIkkLekELEeLkkKIeEAq 838 (913)
+.++.++..++..+..+...++.+.
T Consensus 148 ~~l~~~i~~~e~~~~~~~~~~~~i~ 172 (218)
T cd07596 148 EELEEELEEAESALEEARKRYEEIS 172 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333444443333333
No 282
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=85.40 E-value=91 Score=37.37 Aligned_cols=20 Identities=20% Similarity=0.067 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 002520 813 ADSLRENVIKAEAATQAVKK 832 (913)
Q Consensus 813 IDELReKIkkLekELEeLkk 832 (913)
+.-+++++...++.++.+..
T Consensus 142 l~Pl~e~l~~f~~~v~~~~~ 161 (475)
T PRK10361 142 LSPLREQLDGFRRQVQDSFG 161 (475)
T ss_pred HhhHHHHHHHHHHHHHHHHH
Confidence 33344444444444444443
No 283
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=85.40 E-value=11 Score=42.21 Aligned_cols=20 Identities=25% Similarity=0.355 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 002520 708 ISDERSARESLKSKRQEIDS 727 (913)
Q Consensus 708 VeEIkrLReEInEKrKEIes 727 (913)
...+..++.++..++.+|..
T Consensus 146 K~~~d~L~~e~~~Lre~L~~ 165 (302)
T PF09738_consen 146 KRAHDSLREELDELREQLKQ 165 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444433
No 284
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=85.38 E-value=49 Score=34.22 Aligned_cols=109 Identities=17% Similarity=0.234 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CC--CCHHHHHHHHH
Q 002520 673 QSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMK-NA--ISVDDIDGSIR 749 (913)
Q Consensus 673 ekEIEeL~kqRdEInaELqeLReERdELeSeLKkLVeEIkrLReEInEKrKEIesLQSeLsKLr-S~--KSVEELQeEIk 749 (913)
++-+..+....+++.......|.+...+..+|..+..++...=.++..+...-...+..|.... +| =|.++|...-.
T Consensus 5 ~~ti~~ie~sK~qIf~I~E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f~~ysE~dik~AYe 84 (159)
T PF05384_consen 5 KKTIDTIESSKEQIFEIAEQARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNFDRYSEEDIKEAYE 84 (159)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCHHHHHHHHH
Confidence 3445555556666666666667777777776666666666666666665555555555553221 23 37888887766
Q ss_pred HHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHH
Q 002520 750 NMEHRIAHETLPLKEEKQIIREIKQLKQRREQ 781 (913)
Q Consensus 750 eLE~QIQheSLsLqEEKQlIrEISQLEkeRKd 781 (913)
....-+-.+.+.-..|++++..=..|+..++.
T Consensus 85 ~A~~lQ~~L~~~re~E~qLr~rRD~LErrl~~ 116 (159)
T PF05384_consen 85 EAHELQVRLAMLREREKQLRERRDELERRLRN 116 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65554333333444455555555555555543
No 285
>PRK10884 SH3 domain-containing protein; Provisional
Probab=85.21 E-value=8.2 Score=40.99 Aligned_cols=20 Identities=20% Similarity=0.396 Sum_probs=9.8
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 002520 663 ENLREQIKAAQSKVDEKTRS 682 (913)
Q Consensus 663 PeLKaKIdeLekEIEeL~kq 682 (913)
|+|+.++++++.++..+..+
T Consensus 96 p~le~el~~l~~~l~~~~~~ 115 (206)
T PRK10884 96 PDLENQVKTLTDKLNNIDNT 115 (206)
T ss_pred HHHHHHHHHHHHHHHHHHhH
Confidence 55555555555444444433
No 286
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=85.21 E-value=35 Score=36.61 Aligned_cols=92 Identities=18% Similarity=0.296 Sum_probs=53.4
Q ss_pred CCHHHHHHHHHHHHHHHhhcC--C-CcHHHHH-HHHHHHHHHHHHHHhhhcccchhHHHHHHHhHHHHHHHHHHHHHHHH
Q 002520 739 ISVDDIDGSIRNMEHRIAHET--L-PLKEEKQ-IIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKFLRKEAD 814 (913)
Q Consensus 739 KSVEELQeEIkeLE~QIQheS--L-sLqEEKQ-lIrEISQLEkeRKdV~snIs~kakIEqSLeEKenIqEQIKELKKEID 814 (913)
.+++.+...+++....-+... + .+.+|++ +..+|.+|+.++..+..+. +.++..+...++++.
T Consensus 21 ~~~~~~~~~~~~~~~~~~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~-------------~~l~~~v~~q~~el~ 87 (251)
T PF11932_consen 21 ATLDQAQQVQQQWVQAAQQSQKRIDQWDDEKQELLAEYRQLEREIENLEVYN-------------EQLERQVASQEQELA 87 (251)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHH
Confidence 455555554444333222222 4 7888888 8888888888876543332 234455556666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 815 SLRENVIKAEAATQAVKKLHREESEKLKR 843 (913)
Q Consensus 815 ELReKIkkLekELEeLkkKIeEAqaELdE 843 (913)
+|..++..+......|.+-....-+.|..
T Consensus 88 ~L~~qi~~~~~~~~~l~p~m~~m~~~L~~ 116 (251)
T PF11932_consen 88 SLEQQIEQIEETRQELVPLMEQMIDELEQ 116 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666555555555554
No 287
>cd07667 BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX30 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=85.04 E-value=65 Score=35.37 Aligned_cols=58 Identities=14% Similarity=0.205 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 816 LRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKY 879 (913)
Q Consensus 816 LReKIkkLekELEeLkkKIeEAqaELdELqeElrAaeEeRQEAyekIkELRkQ~DeLNsEFyq~ 879 (913)
-|+++.+++.+++++..+++...+.+..-.++++.. ++ ..++.....+-..|-+||+.
T Consensus 172 rre~~~kLe~~ie~~~~~ve~f~~~~~~E~~~Fe~~---K~---~e~k~~l~~~Ad~~i~fy~~ 229 (240)
T cd07667 172 RKEERPKVPTDVEKCQDRVECFNADLKADMERWQNN---KR---QDFRQLLMGMADKNIQYYEK 229 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH---HHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666655555554444333333322 11 23444444455556666654
No 288
>PF06009 Laminin_II: Laminin Domain II; InterPro: IPR010307 It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure [].; GO: 0007155 cell adhesion, 0005604 basement membrane; PDB: 2WJS_A.
Probab=84.99 E-value=0.28 Score=48.29 Aligned_cols=92 Identities=10% Similarity=0.201 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
Q 002520 801 QIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYD---KNQHFW 877 (913)
Q Consensus 801 nIqEQIKELKKEIDELReKIkkLekELEeLkkKIeEAqaELdELqeElrAaeEeRQEAyekIkELRkQ~De---LNsEFy 877 (913)
.+.+.+..+...+...+..+..+...++.+...+..+...+.........+.+......+++..+...... +....-
T Consensus 14 ~v~~~~~~i~~~l~~~~~~~~~~~~~v~~t~~~~~~~~~~l~~a~~~v~~L~~~~~~L~~kl~~l~~~~~~~~~ls~nI~ 93 (138)
T PF06009_consen 14 NVLDRLDPISENLENWSENLGEINSDVEETNQDISDANKALDDANNSVKNLEQLAPDLLDKLKPLENLSENNSNLSRNIS 93 (138)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHH
Confidence 33344445555555555555555555555555555555555555555555555555555555555555555 888888
Q ss_pred HHHHHHHHHHHhhhc
Q 002520 878 KYKDDTKQANDLASK 892 (913)
Q Consensus 878 q~Rr~l~kARdLAa~ 892 (913)
+.|..+..||+.|++
T Consensus 94 ~IrelI~qAR~~An~ 108 (138)
T PF06009_consen 94 RIRELIAQARDAANR 108 (138)
T ss_dssp ---------------
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999999875
No 289
>smart00283 MA Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.
Probab=84.89 E-value=48 Score=33.76 Aligned_cols=6 Identities=33% Similarity=0.805 Sum_probs=2.4
Q ss_pred HHHHHH
Q 002520 771 EIKQLK 776 (913)
Q Consensus 771 EISQLE 776 (913)
+|+.|-
T Consensus 134 ~I~~la 139 (262)
T smart00283 134 EVRKLA 139 (262)
T ss_pred HHHHHH
Confidence 444443
No 290
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=84.77 E-value=1.2e+02 Score=39.71 Aligned_cols=13 Identities=38% Similarity=0.613 Sum_probs=7.6
Q ss_pred ccCCCcccccccc
Q 002520 363 ETETGFDSVDAEE 375 (913)
Q Consensus 363 ~~~~~~~~~~~~e 375 (913)
|.+|.|||-+++.
T Consensus 667 EkdTEFH~Td~~a 679 (1439)
T PF12252_consen 667 EKDTEFHSTDPKA 679 (1439)
T ss_pred cccccCCCCCCcc
Confidence 4556666666554
No 291
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=84.68 E-value=13 Score=36.30 Aligned_cols=44 Identities=23% Similarity=0.345 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 802 IEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLL 845 (913)
Q Consensus 802 IqEQIKELKKEIDELReKIkkLekELEeLkkKIeEAqaELdELq 845 (913)
+.+.++.+++.++.+.+.++.+...+..+...++.+...+.++.
T Consensus 92 ~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~ 135 (140)
T PRK03947 92 LDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQ 135 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555544444444444443
No 292
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=84.60 E-value=45 Score=41.82 Aligned_cols=13 Identities=31% Similarity=0.424 Sum_probs=9.4
Q ss_pred CCCCCchhHHHHh
Q 002520 500 GEESDDLVCKEVL 512 (913)
Q Consensus 500 ~~~~~~~~~~~~~ 512 (913)
..|.|-|-|+|..
T Consensus 247 ~KEadLLkCiQt~ 259 (861)
T PF15254_consen 247 PKEADLLKCIQTH 259 (861)
T ss_pred cchHHHHHHHHHH
Confidence 3457789999873
No 293
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=84.53 E-value=32 Score=42.02 Aligned_cols=6 Identities=17% Similarity=0.235 Sum_probs=2.9
Q ss_pred CCCCCh
Q 002520 608 RTFQDV 613 (913)
Q Consensus 608 RsFede 613 (913)
|.|...
T Consensus 273 r~~~~~ 278 (652)
T COG2433 273 RGIDRS 278 (652)
T ss_pred ccCCHH
Confidence 444444
No 294
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=84.47 E-value=95 Score=36.77 Aligned_cols=58 Identities=16% Similarity=0.335 Sum_probs=44.2
Q ss_pred CCHHHHHHHHHHHHHHHhhcCC-CcHHHHH-HHHHHHHHHHHHHHhhhcccchhHHHHHH
Q 002520 739 ISVDDIDGSIRNMEHRIAHETL-PLKEEKQ-IIREIKQLKQRREQISSSIGEHDEVQLAF 796 (913)
Q Consensus 739 KSVEELQeEIkeLE~QIQheSL-sLqEEKQ-lIrEISQLEkeRKdV~snIs~kakIEqSL 796 (913)
.-+++||.-|..|-.-.-+-.. ++...-+ +.++|+.+++.++.+..++....-+|..+
T Consensus 224 tkVDDLQD~vE~LRkDV~~RgVRp~~~qLe~v~kdi~~a~keL~~m~~~i~~eKP~WkKi 283 (426)
T smart00806 224 TKVDDLQDIIEALRKDVAQRGVRPSKKQLETVQKELETARKELKKMEEYIDIEKPIWKKI 283 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcChHHHHH
Confidence 4678888888888777766665 5555555 99999999999999888888666665444
No 295
>TIGR01612 235kDa-fam reticulocyte binding/rhoptry protein. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Probab=84.47 E-value=2e+02 Score=40.65 Aligned_cols=46 Identities=11% Similarity=0.308 Sum_probs=37.0
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 661 DDENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEA 706 (913)
Q Consensus 661 dDPeLKaKIdeLekEIEeL~kqRdEInaELqeLReERdELeSeLKk 706 (913)
...+...+|..++..+..+.++.+....+|..++..-+.+..+++.
T Consensus 1105 ~N~k~~~eI~kik~~i~~l~~~ID~~i~kl~~ikkks~~~~~e~~~ 1150 (2757)
T TIGR01612 1105 ENIKYADEINKIKDDIKNLDQKIDHHIKALEEIKKKSENYIDEIKA 1150 (2757)
T ss_pred hccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhh
Confidence 3477888888888888999898888888888888877777666655
No 296
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=84.45 E-value=61 Score=34.57 Aligned_cols=21 Identities=5% Similarity=0.321 Sum_probs=15.1
Q ss_pred CCCHHHHHHHHHHHHHHHhhc
Q 002520 738 AISVDDIDGSIRNMEHRIAHE 758 (913)
Q Consensus 738 ~KSVEELQeEIkeLE~QIQhe 758 (913)
..|.++|..+|......+...
T Consensus 77 ~~s~~eLeq~l~~~~~~L~~~ 97 (240)
T PF12795_consen 77 NLSLEELEQRLSQEQAQLQEL 97 (240)
T ss_pred cCCHHHHHHHHHHHHHHHHHH
Confidence 468888888887777665543
No 297
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=84.27 E-value=13 Score=33.36 Aligned_cols=57 Identities=14% Similarity=0.162 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 824 EAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYK 880 (913)
Q Consensus 824 ekELEeLkkKIeEAqaELdELqeElrAaeEeRQEAyekIkELRkQ~DeLNsEFyq~R 880 (913)
+..++.+..++......++.+..+++.+...+..+|..+.+|+.+...+..++-.+|
T Consensus 11 r~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~r 67 (69)
T PF14197_consen 11 RNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEELR 67 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333444444455555677777788888888888888888888888888877754443
No 298
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=84.11 E-value=22 Score=32.23 Aligned_cols=15 Identities=20% Similarity=0.102 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHH
Q 002520 854 IRQEAYKHWQSLKKQ 868 (913)
Q Consensus 854 eRQEAyekIkELRkQ 868 (913)
.+.....+|..+...
T Consensus 54 e~~~~~~rl~~LL~k 68 (72)
T PF06005_consen 54 ERNAWQERLRSLLGK 68 (72)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 333333344444333
No 299
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=84.10 E-value=42 Score=38.75 Aligned_cols=41 Identities=15% Similarity=0.177 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Q 002520 693 IRASYKEYAEKLEAAISDERSARES----LKSKRQEIDSVQSRIN 733 (913)
Q Consensus 693 LReERdELeSeLKkLVeEIkrLReE----InEKrKEIesLQSeLs 733 (913)
+..+...+...|.+-++...++-.+ ...++++-+.|++++.
T Consensus 112 aE~khrKli~dLE~dRe~haqdaaeGDDlt~~LEKEReqL~QQiE 156 (561)
T KOG1103|consen 112 AEKKHRKLIKDLEADREAHAQDAAEGDDLTAHLEKEREQLQQQIE 156 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhccchHHHHHHHHHHHHHHHHH
Confidence 3333344444455555444444333 3445555556666553
No 300
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=84.09 E-value=35 Score=31.50 Aligned_cols=27 Identities=11% Similarity=0.188 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 859 YKHWQSLKKQAYDKNQHFWKYKDDTKQ 885 (913)
Q Consensus 859 yekIkELRkQ~DeLNsEFyq~Rr~l~k 885 (913)
......|...|.....+|...++..++
T Consensus 88 ~~q~~~L~~~f~~~m~~fq~~Q~~~~~ 114 (117)
T smart00503 88 KAQTEKLRKKFKEVMNEFQRLQRKYRE 114 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666777788888888877776653
No 301
>COG5293 Predicted ATPase [General function prediction only]
Probab=83.96 E-value=1.1e+02 Score=36.91 Aligned_cols=27 Identities=15% Similarity=0.447 Sum_probs=20.1
Q ss_pred CcHHHHH--HHHHHHHHHHHHHHhhhccc
Q 002520 761 PLKEEKQ--IIREIKQLKQRREQISSSIG 787 (913)
Q Consensus 761 sLqEEKQ--lIrEISQLEkeRKdV~snIs 787 (913)
-++++|. +..+|..+++.++.+...+.
T Consensus 331 ~~~e~R~~yl~~ei~~i~~dLk~~n~~~~ 359 (591)
T COG5293 331 AITEERHDYLQEEIAEIEGDLKEVNAELD 359 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677776 88888888888887766554
No 302
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=83.66 E-value=85 Score=35.58 Aligned_cols=8 Identities=25% Similarity=0.609 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q 002520 743 DIDGSIRN 750 (913)
Q Consensus 743 ELQeEIke 750 (913)
.|+..|..
T Consensus 99 ~l~~~i~~ 106 (301)
T PF06120_consen 99 SLKDQIKN 106 (301)
T ss_pred HHHHHHHH
Confidence 33334433
No 303
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=83.60 E-value=32 Score=33.37 Aligned_cols=118 Identities=12% Similarity=0.114 Sum_probs=0.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------
Q 002520 796 FDQKDQIEEKMKFLRKEADSLRENVIKAEAATQ---AVKKLHREESEKLKRLLGQFKAADEIRQEA-------------- 858 (913)
Q Consensus 796 LeEKenIqEQIKELKKEIDELReKIkkLekELE---eLkkKIeEAqaELdELqeElrAaeEeRQEA-------------- 858 (913)
+.....|...|..++..++.|+.....+-.... .+..+++.+.+....+........+.+...
T Consensus 5 ~~~v~~I~~~i~~i~~~v~~l~~l~~~~~t~~~~~~~~~~~l~~~~~~~~~~~~~ik~~lk~l~~~~~~~~~~~~s~~~r 84 (151)
T cd00179 5 FEEVEEIRGNIDKISEDVEELQKLHSQLLTAPDADPELKQELESLVQEIKKLAKEIKGKLKELEESNEQNEALNGSSVDR 84 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcHHHH
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCHHHHH-HHHHHHHHhhhhcC
Q 002520 859 --YKHWQSLKKQAYDKNQHFWKYKDDTKQANDLASKGDREALQ-HLCVNQVRSRTLLL 913 (913)
Q Consensus 859 --yekIkELRkQ~DeLNsEFyq~Rr~l~kARdLAa~~dv~eLq-elc~~QVEkfm~lw 913 (913)
......|...|.....+|...++..+..---......+-+. .+.-.||+.+|.-+
T Consensus 85 ~~~~q~~~L~~~f~~~m~~fq~~Q~~~~~~~k~~i~Rq~~i~~~~~tdeei~~~~~~~ 142 (151)
T cd00179 85 IRKTQHSGLSKKFVEVMTEFNKAQRKYRERYKERIQRQLEITGGEATDEELEDMLESG 142 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHcC
No 304
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=83.16 E-value=11 Score=39.46 Aligned_cols=114 Identities=17% Similarity=0.274 Sum_probs=65.5
Q ss_pred CCCCChhhhhhhhccccCCCCcCCCchhhhhhhccc--ccccc--CcceeeccCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 002520 608 RTFQDVEGIERSDRCETQTSTPEGSTVDASESRNIG--VEVVK--QPFYFLVKVPRYDDENLREQIKAAQSKVDEKTRSR 683 (913)
Q Consensus 608 RsFedeeefkkFLkkeklDk~~eesLKDaVEe~kE~--Ld~LR--r~fYf~Vr~rRLdDPeLKaKIdeLekEIEeL~kqR 683 (913)
+.|-+-.++.++.-+ .......++|+-++.+=.+ +..-| .+.|| =.+|.-.-..++.++..++++++.+..++
T Consensus 9 ~~~y~lKELEK~~pK--~~gI~~~~VKdvlq~LvDDglV~~EKiGssn~Y-WsFps~~~~~~~~~~~~l~~~~~~~~~~i 85 (188)
T PF03962_consen 9 KDFYTLKELEKLAPK--EKGIVSMSVKDVLQSLVDDGLVHVEKIGSSNYY-WSFPSQAKQKRQNKLEKLQKEIEELEKKI 85 (188)
T ss_pred CCcccHHHHHHHccc--ccCCchhhHHHHHHHHhccccchhhhccCeeEE-EecChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444433 2233345666666655442 11113 33342 45555344778889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 684 DAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEI 725 (913)
Q Consensus 684 dEInaELqeLReERdELeSeLKkLVeEIkrLReEInEKrKEI 725 (913)
..+...+...+..|.+-.. -..+.+++..++.++..+.+++
T Consensus 86 ~~l~~~i~~~~~~r~~~~e-R~~~l~~l~~l~~~~~~l~~el 126 (188)
T PF03962_consen 86 EELEEKIEEAKKGREESEE-REELLEELEELKKELKELKKEL 126 (188)
T ss_pred HHHHHHHHHHHhcccccHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988888877766633 3334444444444444444444
No 305
>PF14992 TMCO5: TMCO5 family
Probab=82.87 E-value=66 Score=36.16 Aligned_cols=95 Identities=18% Similarity=0.230 Sum_probs=46.1
Q ss_pred CCCHHHHHHHHHHHHHHHhhcC--C--CcHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHhHHHHH-HHHHHHHHH
Q 002520 738 AISVDDIDGSIRNMEHRIAHET--L--PLKEEKQIIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIE-EKMKFLRKE 812 (913)
Q Consensus 738 ~KSVEELQeEIkeLE~QIQheS--L--sLqEEKQlIrEISQLEkeRKdV~snIs~kakIEqSLeEKenIq-EQIKELKKE 812 (913)
.+++.++|.+|.+-+..+++.. + +|+.=|- .+++|....-.....+. ++++...+...+. ++...+++-
T Consensus 83 ~~~~~elq~k~~e~~~~~~~e~~~~~~~lq~sk~---~lqql~~~~~~qE~ei~---kve~d~~~v~~l~eDq~~~i~kl 156 (280)
T PF14992_consen 83 SKSVQELQRKQDEQETNVQCEDPQLSQSLQFSKN---KLQQLLESCASQEKEIA---KVEDDYQQVHQLCEDQANEIKKL 156 (280)
T ss_pred hhhhhhhhhhhccccCCCCCCccchhcccHHhhh---hHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 5889999999988887776665 3 4444442 22222222222222222 3443444433343 222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 813 ADSLRENVIKAEAATQAVKKLHREESEK 840 (913)
Q Consensus 813 IDELReKIkkLekELEeLkkKIeEAqaE 840 (913)
.+.| .+|+. +.++.-|..++..++..
T Consensus 157 kE~L-~rmE~-ekE~~lLe~el~k~q~~ 182 (280)
T PF14992_consen 157 KEKL-RRMEE-EKEMLLLEKELSKYQMQ 182 (280)
T ss_pred HHHH-HHHHH-HHHHHHHHHHHHHHhch
Confidence 2222 45555 55556666555555543
No 306
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=82.78 E-value=59 Score=34.12 Aligned_cols=32 Identities=19% Similarity=0.254 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002520 858 AYKHWQSLKKQAYDKNQHFWKYKDDTKQANDLAS 891 (913)
Q Consensus 858 AyekIkELRkQ~DeLNsEFyq~Rr~l~kARdLAa 891 (913)
.+..|-.|=.++-.+...|-.+|...- |||+.
T Consensus 139 eh~rll~LWr~v~~lRr~f~elr~~Te--rdL~~ 170 (182)
T PF15035_consen 139 EHSRLLSLWREVVALRRQFAELRTATE--RDLSD 170 (182)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHH--hhHHH
Confidence 345555555666666666666655443 55544
No 307
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=82.67 E-value=28 Score=38.64 Aligned_cols=81 Identities=11% Similarity=0.163 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 799 KDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWK 878 (913)
Q Consensus 799 KenIqEQIKELKKEIDELReKIkkLekELEeLkkKIeEAqaELdELqeElrAaeEeRQEAyekIkELRkQ~DeLNsEFyq 878 (913)
.+.++.++..+...-..|..+|++-+.+++..++.+..++.--....++++.++.++++.|+....-...++-+...+-.
T Consensus 178 ~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~lY~~Y~~kfRNl~yLe~qle~ 257 (267)
T PF10234_consen 178 LQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKLYEIYVEKFRNLDYLEHQLEE 257 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 34445555566666666666666666666666666666666666777788888888887777666655555555554444
Q ss_pred H
Q 002520 879 Y 879 (913)
Q Consensus 879 ~ 879 (913)
+
T Consensus 258 ~ 258 (267)
T PF10234_consen 258 Y 258 (267)
T ss_pred H
Confidence 3
No 308
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=82.49 E-value=62 Score=35.04 Aligned_cols=14 Identities=14% Similarity=0.237 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHH
Q 002520 768 IIREIKQLKQRREQ 781 (913)
Q Consensus 768 lIrEISQLEkeRKd 781 (913)
++.++..|+..++.
T Consensus 90 al~~~~~le~~~~~ 103 (225)
T COG1842 90 ALEEKQSLEDLAKA 103 (225)
T ss_pred HHHHHHHHHHHHHH
Confidence 55555555555543
No 309
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=82.16 E-value=30 Score=31.40 Aligned_cols=27 Identities=19% Similarity=0.359 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 805 KMKFLRKEADSLRENVIKAEAATQAVK 831 (913)
Q Consensus 805 QIKELKKEIDELReKIkkLekELEeLk 831 (913)
.|..++.++.+|+.+-..+..+...|.
T Consensus 19 ti~~Lq~e~eeLke~n~~L~~e~~~L~ 45 (72)
T PF06005_consen 19 TIALLQMENEELKEKNNELKEENEELK 45 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 333344444444444333333344443
No 310
>PRK11519 tyrosine kinase; Provisional
Probab=82.14 E-value=71 Score=39.46 Aligned_cols=37 Identities=11% Similarity=0.079 Sum_probs=19.1
Q ss_pred chhhhhhhcccccccc---CcceeeccCCCCCchHHHHHHH
Q 002520 633 TVDASESRNIGVEVVK---QPFYFLVKVPRYDDENLREQIK 670 (913)
Q Consensus 633 LKDaVEe~kE~Ld~LR---r~fYf~Vr~rRLdDPeLKaKId 670 (913)
....+..+...|.+-+ .+.++-++|.. .||.+-+.|-
T Consensus 207 ~~~~~~~l~~~l~V~~~~k~S~ii~Is~~~-~dP~~Aa~ia 246 (719)
T PRK11519 207 TLGMINNLQNNLTVTENGKDTGVLSLTYTG-EDREQIRDIL 246 (719)
T ss_pred HHHHHHHHHhcceEEecCCCceEEEEEEEc-CCHHHHHHHH
Confidence 3455555555555532 23342344444 5677776663
No 311
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=82.11 E-value=21 Score=37.68 Aligned_cols=91 Identities=20% Similarity=0.294 Sum_probs=48.8
Q ss_pred cHHHHH-HHHHHHHHHHHHHHhhhcccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 762 LKEEKQ-IIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEK 840 (913)
Q Consensus 762 LqEEKQ-lIrEISQLEkeRKdV~snIs~kakIEqSLeEKenIqEQIKELKKEIDELReKIkkLekELEeLkkKIeEAqaE 840 (913)
|++-++ +.+.++-.+..++.+.+.+. ...+++.|.+++++....++++..+++-+..+.|
T Consensus 91 l~ek~q~l~~t~s~veaEik~L~s~Lt-----------~eemQe~i~~L~kev~~~~erl~~~k~g~~~vtp-------- 151 (201)
T KOG4603|consen 91 LTEKVQSLQQTCSYVEAEIKELSSALT-----------TEEMQEEIQELKKEVAGYRERLKNIKAGTNHVTP-------- 151 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC-----------hHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCH--------
Confidence 344444 66777777777776655544 1245556666666666666665555544443332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 841 LKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHF 876 (913)
Q Consensus 841 LdELqeElrAaeEeRQEAyekIkELRkQ~DeLNsEF 876 (913)
+...++...++++...|.+.+.-|+++...+
T Consensus 152 -----edk~~v~~~y~~~~~~wrk~krmf~ei~d~~ 182 (201)
T KOG4603|consen 152 -----EDKEQVYREYQKYCKEWRKRKRMFREIIDKL 182 (201)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2333444555555555555555444444433
No 312
>cd09236 V_AnPalA_UmRIM20_like Protein-interacting V-domains of Aspergillus nidulans PalA/RIM20, Ustilago maydis RIM20, and related proteins. This family belongs to the V_Alix_like superfamily which includes the V-shaped (V) domains of Bro1 and Rim20 from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Aspergillus nidulas PalA/RIM20 and Ustilago maydis RIM20, like Saccharomyces cerevisiae Rim20, participate in the response to the external pH via the Pal/Rim101 pathway; however, Saccharomyces cerevisiae Rim20 does not belong to this family. This pathway is a signaling cascade resulting in the activation of the transcription factor PacC/Rim101. The mammalian Alix V-domain (belonging to a different family) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. Aspergillus nidulas Pa
Probab=82.11 E-value=97 Score=35.15 Aligned_cols=37 Identities=8% Similarity=0.055 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 844 LLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYK 880 (913)
Q Consensus 844 LqeElrAaeEeRQEAyekIkELRkQ~DeLNsEFyq~R 880 (913)
...++..+.+.+..+|..+.++...+.+..+-|....
T Consensus 300 ~~~~re~~lq~L~~ay~~y~el~~nl~eG~kFY~dL~ 336 (353)
T cd09236 300 ATKERERALQSLDLAYFKYKEIVSNLDEGRKFYNDLA 336 (353)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666777777777777777666555443
No 313
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=82.09 E-value=32 Score=32.17 Aligned_cols=23 Identities=26% Similarity=0.644 Sum_probs=11.0
Q ss_pred CcHHHHH-HHHHHHHHHHHHHHhh
Q 002520 761 PLKEEKQ-IIREIKQLKQRREQIS 783 (913)
Q Consensus 761 sLqEEKQ-lIrEISQLEkeRKdV~ 783 (913)
.|..+++ ++.++..|+..+..+.
T Consensus 33 ~ld~~~r~l~~~~e~lr~~rN~~s 56 (108)
T PF02403_consen 33 ELDQERRELQQELEELRAERNELS 56 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3444444 5555555555554433
No 314
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=82.08 E-value=57 Score=34.55 Aligned_cols=31 Identities=13% Similarity=0.105 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 002520 863 QSLKKQAYDKNQHFWKYKDDTKQANDLASKG 893 (913)
Q Consensus 863 kELRkQ~DeLNsEFyq~Rr~l~kARdLAa~~ 893 (913)
....+.+...++.|.+.+|..+..-+-...|
T Consensus 155 ~~v~~~y~~~~~~wrk~krmf~ei~d~~~e~ 185 (201)
T KOG4603|consen 155 EQVYREYQKYCKEWRKRKRMFREIIDKLLEG 185 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3444555666777777777666555544443
No 315
>cd09234 V_HD-PTP_like Protein-interacting V-domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains. This family contains the V-shaped (V) domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23) and related domains. It belongs to the V_Alix_like superfamily which includes the V domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X/ also known as apoptosis-linked gene-2 interacting protein 1, AIP1), and related domains. HD_PTP interacts with the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in cell migration and endosomal trafficking. The related Alix V-domain (belonging to a different family in this superfamily) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. The Alix V-domain is also a dimerization domain. In addi
Probab=82.06 E-value=94 Score=34.98 Aligned_cols=63 Identities=13% Similarity=0.002 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002520 828 QAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKDDTKQANDLA 890 (913)
Q Consensus 828 EeLkkKIeEAqaELdELqeElrAaeEeRQEAyekIkELRkQ~DeLNsEFyq~Rr~l~kARdLA 890 (913)
+.|-+.+.++++++...+........+|...+..+......+.++.+..-+-+.+++.-...+
T Consensus 261 ~~ll~~i~~an~~f~~~r~~~~~~~~~Re~~l~~L~~ay~~y~el~~~l~eG~~FY~dL~~~v 323 (337)
T cd09234 261 ENILKALTEANAKYAPVRKALSETKQKRESTISSLIASYEAYEDLLKKSQKGIDFYKKLEGNV 323 (337)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 334444444444444333333444555555555555555555555555555555555444433
No 316
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=82.04 E-value=25 Score=35.09 Aligned_cols=51 Identities=8% Similarity=0.163 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 799 KDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFK 849 (913)
Q Consensus 799 KenIqEQIKELKKEIDELReKIkkLekELEeLkkKIeEAqaELdELqeElr 849 (913)
|+.|..+|..+-..+++..+-.+..+.++.+++..+..+..+++.++.-..
T Consensus 63 KkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~ 113 (126)
T PF07889_consen 63 KKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVE 113 (126)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444444444433333
No 317
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=81.95 E-value=1.6e+02 Score=37.44 Aligned_cols=62 Identities=16% Similarity=0.328 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 002520 666 REQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISD-ERSARESLKSKRQEIDS 727 (913)
Q Consensus 666 KaKIdeLekEIEeL~kqRdEInaELqeLReERdELeSeLKkLVeE-IkrLReEInEKrKEIes 727 (913)
+++...++.+++....+.-.+...+.-+-.-+++.-.||+-.+++ -.++...+..+-.+.+.
T Consensus 23 e~e~~~lk~~l~~~~~~~~~~e~r~~hld~aLkec~~qlr~~ree~eq~i~~~~~~~s~e~e~ 85 (769)
T PF05911_consen 23 EAEAASLKQQLEAATQQKLALEDRVSHLDGALKECMRQLRQVREEQEQKIHEAVAKKSKEWEK 85 (769)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHH
Confidence 334444444444444444444444444444444444444444433 23333333333344333
No 318
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=81.76 E-value=84 Score=34.20 Aligned_cols=13 Identities=8% Similarity=0.223 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHH
Q 002520 872 KNQHFWKYKDDTK 884 (913)
Q Consensus 872 LNsEFyq~Rr~l~ 884 (913)
+...+...|..+.
T Consensus 108 lq~el~~ar~~~~ 120 (246)
T PF00769_consen 108 LQEELEEAREDEE 120 (246)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 319
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=81.54 E-value=29 Score=32.60 Aligned_cols=59 Identities=5% Similarity=0.066 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 674 SKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRI 732 (913)
Q Consensus 674 kEIEeL~kqRdEInaELqeLReERdELeSeLKkLVeEIkrLReEInEKrKEIesLQSeL 732 (913)
.++..+..+.......+..+..+...++..+.++..++.+...++....+.++.|..++
T Consensus 3 ~EL~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~ 61 (96)
T PF08647_consen 3 TELVSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEM 61 (96)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 34455555555555555555555555555555555555555555555555554444443
No 320
>cd09237 V_ScBro1_like Protein-interacting V-domain of Saccharomyces cerevisiae Bro1 and related domains. This family contains the V-shaped (V) domain of Saccharomyces cerevisiae Bro1, and related domains. It belongs to the V_Alix_like superfamily which also includes the V-domain of Saccharomyces cerevisiae Rim20 (also known as PalA), mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Bro1 interacts with the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in endosomal trafficking. The mammalian Alix V-domain (belonging to a different family) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. The Alix V-domain is also a dimerization domain. Bro1 also has an N-terminal Bro1-like domain, which binds Snf7, a component of the ESCRT-III complex, and a C-terminal proline-rich
Probab=81.46 E-value=1e+02 Score=34.91 Aligned_cols=33 Identities=12% Similarity=0.046 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 844 LLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHF 876 (913)
Q Consensus 844 LqeElrAaeEeRQEAyekIkELRkQ~DeLNsEF 876 (913)
...++....+....+|..+.++...+....+-|
T Consensus 303 ~~~~R~~~l~~l~~ay~~y~el~~~l~~G~~FY 335 (356)
T cd09237 303 KQKLRKEFFEKLKKAYNSFKKFSAGLPKGLEFY 335 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHH
Confidence 344444444555555555555555555544433
No 321
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=81.28 E-value=1.3e+02 Score=36.03 Aligned_cols=51 Identities=18% Similarity=0.117 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 830 VKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYK 880 (913)
Q Consensus 830 LkkKIeEAqaELdELqeElrAaeEeRQEAyekIkELRkQ~DeLNsEFyq~R 880 (913)
|--.+.++.....-.+.++..++++..++|..|.+|++.++.-..-..+|-
T Consensus 432 llvrl~eaeea~~~a~~r~~~~eqe~ek~~kqiekLK~kh~~Ei~t~kq~l 482 (488)
T PF06548_consen 432 LLVRLREAEEAASVAQERAMDAEQENEKAKKQIEKLKRKHKMEISTMKQYL 482 (488)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333455666666666777888888888899999999988777655555443
No 322
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=81.24 E-value=70 Score=39.06 Aligned_cols=86 Identities=15% Similarity=0.140 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCHHH
Q 002520 818 ENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKDDTKQANDLASKGDREA 897 (913)
Q Consensus 818 eKIkkLekELEeLkkKIeEAqaELdELqeElrAaeEeRQEAyekIkELRkQ~DeLNsEFyq~Rr~l~kARdLAa~~dv~e 897 (913)
...+.+.+++..|..+.+....+++...+-...+..++.+.-+.+...+..+..+..+.|..+.....|++= -+.-..+
T Consensus 414 ~~~~~~~e~~~~L~qqlD~kd~~~n~~sqL~~~lk~q~~~qee~~s~~~~~~e~~q~e~~~~Q~~~e~~~~e-~~e~~~a 492 (607)
T KOG0240|consen 414 EEEDILTERIESLYQQLDQKDDQINKQSQLMEKLKEQLLDQEELLSSTRRLYEDIQQELSEIQEENEAAKDE-VKEVLTA 492 (607)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 334444455555555555555666666666666666666666666666666666666666666655555544 3345556
Q ss_pred HHHHHHH
Q 002520 898 LQHLCVN 904 (913)
Q Consensus 898 Lqelc~~ 904 (913)
|.+||++
T Consensus 493 l~el~~~ 499 (607)
T KOG0240|consen 493 LEELAVN 499 (607)
T ss_pred HHHHHHh
Confidence 6666653
No 323
>cd07624 BAR_SNX7_30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 7 and 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX7, SNX30, and similar proteins. The specific functions of SNX7 and SNX30 have not been elucidated. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=81.21 E-value=74 Score=33.24 Aligned_cols=17 Identities=12% Similarity=0.198 Sum_probs=8.0
Q ss_pred hHHHHHHHHHHHHHHHH
Q 002520 663 ENLREQIKAAQSKVDEK 679 (913)
Q Consensus 663 PeLKaKIdeLekEIEeL 679 (913)
.+++..++.|+..+..+
T Consensus 17 ~e~~eyi~~L~~~l~~~ 33 (200)
T cd07624 17 DKMNEYLTLFGEKLGTI 33 (200)
T ss_pred HHHHHHHHHHHHHhHHH
Confidence 44555555555444333
No 324
>cd09237 V_ScBro1_like Protein-interacting V-domain of Saccharomyces cerevisiae Bro1 and related domains. This family contains the V-shaped (V) domain of Saccharomyces cerevisiae Bro1, and related domains. It belongs to the V_Alix_like superfamily which also includes the V-domain of Saccharomyces cerevisiae Rim20 (also known as PalA), mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Bro1 interacts with the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in endosomal trafficking. The mammalian Alix V-domain (belonging to a different family) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. The Alix V-domain is also a dimerization domain. Bro1 also has an N-terminal Bro1-like domain, which binds Snf7, a component of the ESCRT-III complex, and a C-terminal proline-rich
Probab=81.03 E-value=1e+02 Score=34.80 Aligned_cols=40 Identities=8% Similarity=0.016 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002520 850 AADEIRQEAYKHWQSLKKQAYDKNQHFWKYKDDTKQANDL 889 (913)
Q Consensus 850 AaeEeRQEAyekIkELRkQ~DeLNsEFyq~Rr~l~kARdL 889 (913)
.....|+..+..|......+.++.+..-+-+.+++.-.++
T Consensus 302 ~~~~~R~~~l~~l~~ay~~y~el~~~l~~G~~FY~dL~~~ 341 (356)
T cd09237 302 SKQKLRKEFFEKLKKAYNSFKKFSAGLPKGLEFYDDLLKM 341 (356)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHH
Confidence 3444445555555555555555555444444444444433
No 325
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=80.81 E-value=1.8e+02 Score=37.31 Aligned_cols=36 Identities=19% Similarity=0.099 Sum_probs=19.4
Q ss_pred CCCCCcccccCCcccccCCCC----Ccccccccccccccc
Q 002520 286 DTTAKPDVDFRDSVVTESSPS----GEVDDMERDNEVGKL 321 (913)
Q Consensus 286 d~~~~~~v~~~ds~~~~~~~~----~~~d~~~~~~~v~~l 321 (913)
|++.+-+-+..|-||-|--|- -+||.-.--+.+-+|
T Consensus 573 dIa~edik~Lqd~cPsElePFLkVpLlcd~e~L~qh~lal 612 (1424)
T KOG4572|consen 573 DIAKEDIKDLQDACPSELEPFLKVPLLCDAEKLAQHGLAL 612 (1424)
T ss_pred hhhHHHHHHHHHhChhhccchhcCccccchHHHHHHHHhh
Confidence 566666667777777554442 345543333444443
No 326
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=80.80 E-value=55 Score=38.57 Aligned_cols=108 Identities=16% Similarity=0.235 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH---
Q 002520 801 QIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKR-------LLGQFKAADEIRQEAYKHWQSLKKQAY--- 870 (913)
Q Consensus 801 nIqEQIKELKKEIDELReKIkkLekELEeLkkKIeEAqaELdE-------LqeElrAaeEeRQEAyekIkELRkQ~D--- 870 (913)
.+.+|...++++...++.++...+.+|..|+.+...++.+.-. +......++..+-....++.+++.+.-
T Consensus 31 ~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~~~a~~~~~t~~~~~~en~~~r~~~eir~~~~q~~e~~ 110 (459)
T KOG0288|consen 31 RLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVREEATEKTLTVDVLIAENLRIRSLNEIRELREQKAEFE 110 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 3444444555555555555555555555555544444444433 222222233333333445555555433
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHh
Q 002520 871 DKNQHFWKYKDDTKQANDLASKGDREALQHLCVNQVRS 908 (913)
Q Consensus 871 eLNsEFyq~Rr~l~kARdLAa~~dv~eLqelc~~QVEk 908 (913)
...-....-|+.++-+..||....--.|+.+.-.+|..
T Consensus 111 n~~~~l~~~~~~~r~~e~la~~~~~l~~~~~r~~s~~g 148 (459)
T KOG0288|consen 111 NAELALREMRRKMRIAERLAEALKDLGLKDLRRQSVDG 148 (459)
T ss_pred cchhhHHHHHHHHHHHHHHHHHhhhcchhhhhhhhhcC
Confidence 33335556677777777777654434444444444443
No 327
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=80.75 E-value=1.2e+02 Score=35.32 Aligned_cols=67 Identities=21% Similarity=0.293 Sum_probs=28.5
Q ss_pred ccCCCC--Cc--hHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 655 VKVPRY--DD--ENLREQIKAAQSKVDEK------TRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQE 724 (913)
Q Consensus 655 Vr~rRL--dD--PeLKaKIdeLekEIEeL------~kqRdEInaELqeLReERdELeSeLKkLVeEIkrLReEInEKrKE 724 (913)
.+|-+| .| -+|+....-+..+++.- ...++.++.-+..-+.-....-+.|-++ -++-++.|.+++.+
T Consensus 50 ~kYGK~NinDP~~ALqRDf~~l~Ek~D~EK~p~ct~spl~iL~~mM~qcKnmQe~~~s~LaAa---E~khrKli~dLE~d 126 (561)
T KOG1103|consen 50 AKYGKLNINDPFAALQRDFAILGEKIDEEKIPQCTESPLDILDKMMAQCKNMQENAASLLAAA---EKKHRKLIKDLEAD 126 (561)
T ss_pred HhhcccccCChHHHHHHHHHHHhccccccccceeccChhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 345555 34 34544444444443332 2345555554444444333333333333 33334444444443
No 328
>cd09238 V_Alix_like_1 Protein-interacting V-domain of an uncharacterized family of the V_Alix_like superfamily. This domain family is comprised of uncharacterized plant proteins. It belongs to the V_Alix_like superfamily which includes the V-shaped (V) domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X), (His-Domain) type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. Alix, HD-PTP, Bro1, a
Probab=80.56 E-value=1.1e+02 Score=34.66 Aligned_cols=33 Identities=6% Similarity=0.071 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 845 LGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFW 877 (913)
Q Consensus 845 qeElrAaeEeRQEAyekIkELRkQ~DeLNsEFy 877 (913)
+.++....+....+|..+.++...+.+..+-|.
T Consensus 287 ~~~re~~l~~L~~ay~~y~el~~~l~eG~kFY~ 319 (339)
T cd09238 287 RAATESHATQIRAAVAKYRELREGMEEGLRFYS 319 (339)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHchHHHHHHHH
Confidence 344455556666667777777766666655444
No 329
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=80.38 E-value=4.3 Score=46.97 Aligned_cols=27 Identities=33% Similarity=0.647 Sum_probs=18.5
Q ss_pred CcHHHHH-HHHHHHHHHHHHHHhhhccc
Q 002520 761 PLKEEKQ-IIREIKQLKQRREQISSSIG 787 (913)
Q Consensus 761 sLqEEKQ-lIrEISQLEkeRKdV~snIs 787 (913)
.|..+++ ++.++.+|+.+++.+...++
T Consensus 32 ~ld~~~r~l~~~~~~lr~~rn~~sk~i~ 59 (425)
T PRK05431 32 ELDEERRELQTELEELQAERNALSKEIG 59 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556655 88888888888876555544
No 330
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=80.24 E-value=45 Score=37.44 Aligned_cols=16 Identities=19% Similarity=0.245 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 002520 711 ERSARESLKSKRQEID 726 (913)
Q Consensus 711 IkrLReEInEKrKEIe 726 (913)
-.+|+..|.++..++.
T Consensus 48 ~~q~~~~i~~k~~e~r 63 (338)
T KOG3647|consen 48 RDQYRSLIGDKIEELR 63 (338)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4556666777766664
No 331
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=80.16 E-value=1.2e+02 Score=34.96 Aligned_cols=27 Identities=15% Similarity=0.148 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 697 YKEYAEKLEAAISDERSARESLKSKRQ 723 (913)
Q Consensus 697 RdELeSeLKkLVeEIkrLReEInEKrK 723 (913)
...+..+|+.+++-..++..++.+|..
T Consensus 139 l~~~~eQl~~lr~ar~~Le~Dl~dK~~ 165 (384)
T PF03148_consen 139 LEQAEEQLRLLRAARYRLEKDLSDKFE 165 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444445555544
No 332
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=80.09 E-value=1.8e+02 Score=36.83 Aligned_cols=14 Identities=43% Similarity=0.553 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHH
Q 002520 804 EKMKFLRKEADSLR 817 (913)
Q Consensus 804 EQIKELKKEIDELR 817 (913)
..+..++.++++|+
T Consensus 244 ~d~E~Lr~e~~qL~ 257 (916)
T KOG0249|consen 244 TDIEDLRGELDQLR 257 (916)
T ss_pred hhHHHHHHHHHHHH
Confidence 33334444444444
No 333
>COG5283 Phage-related tail protein [Function unknown]
Probab=80.03 E-value=2.1e+02 Score=37.82 Aligned_cols=47 Identities=11% Similarity=0.223 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhhcC
Q 002520 711 ERSARESLKSKRQEIDSVQSRINMMKNAISVDDIDGSIRNMEHRIAHET 759 (913)
Q Consensus 711 IkrLReEInEKrKEIesLQSeLsKLrS~KSVEELQeEIkeLE~QIQheS 759 (913)
....+.-+.++.+++..+.......+ +...+++.++.+.+...+..+
T Consensus 66 meK~k~~~~~~kqe~~evn~at~a~~--kay~e~~~q~tqae~~~~sas 112 (1213)
T COG5283 66 MEKQKKAYEDLKQEVKEVNRATQASK--KAYQEYNAQYTQAENKLRSLS 112 (1213)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444443333 566777777777777777555
No 334
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=80.02 E-value=28 Score=33.11 Aligned_cols=35 Identities=20% Similarity=0.293 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 815 SLRENVIKAEAATQAVKKLHREESEKLKRLLGQFK 849 (913)
Q Consensus 815 ELReKIkkLekELEeLkkKIeEAqaELdELqeElr 849 (913)
.|.++++.++..++.+.++...++.++.+++.+++
T Consensus 71 ~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~ 105 (110)
T TIGR02338 71 ELKEKKETLELRVKTLQRQEERLREQLKELQEKIQ 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444333
No 335
>PLN02939 transferase, transferring glycosyl groups
Probab=79.57 E-value=2.1e+02 Score=37.35 Aligned_cols=23 Identities=9% Similarity=0.166 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 002520 710 DERSARESLKSKRQEIDSVQSRI 732 (913)
Q Consensus 710 EIkrLReEInEKrKEIesLQSeL 732 (913)
++.-++.+-.-+...|+.|+.++
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~ 249 (977)
T PLN02939 227 ELDVLKEENMLLKDDIQFLKAEL 249 (977)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHH
Confidence 34444444444445555555544
No 336
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=79.44 E-value=51 Score=34.59 Aligned_cols=20 Identities=10% Similarity=0.109 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHhhhccc
Q 002520 768 IIREIKQLKQRREQISSSIG 787 (913)
Q Consensus 768 lIrEISQLEkeRKdV~snIs 787 (913)
--..|+.|...+.+.+...+
T Consensus 14 qa~Lv~~LQ~KV~qYr~rc~ 33 (182)
T PF15035_consen 14 QAQLVQRLQAKVLQYRKRCA 33 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555444443
No 337
>PRK09343 prefoldin subunit beta; Provisional
Probab=79.20 E-value=37 Score=33.13 Aligned_cols=21 Identities=29% Similarity=0.417 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 002520 826 ATQAVKKLHREESEKLKRLLG 846 (913)
Q Consensus 826 ELEeLkkKIeEAqaELdELqe 846 (913)
.|+.|.++...++..+.+++.
T Consensus 86 ~ik~lekq~~~l~~~l~e~q~ 106 (121)
T PRK09343 86 RSRTLEKQEKKLREKLKELQA 106 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 338
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=79.19 E-value=1.5e+02 Score=35.52 Aligned_cols=34 Identities=18% Similarity=0.225 Sum_probs=21.7
Q ss_pred HHHHHHHHhhcCCCcHHHHH-HHHHHHHHHHHHHH
Q 002520 748 IRNMEHRIAHETLPLKEEKQ-IIREIKQLKQRREQ 781 (913)
Q Consensus 748 IkeLE~QIQheSLsLqEEKQ-lIrEISQLEkeRKd 781 (913)
|..|...|-.++..-..|++ +.++...|+.++++
T Consensus 387 ~~slaaEiSalr~erEkEr~~l~~eNk~L~~QLrD 421 (488)
T PF06548_consen 387 INSLAAEISALRAEREKERRFLKDENKGLQIQLRD 421 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHh
Confidence 55555555555554455555 77788888888776
No 339
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=78.93 E-value=1.9e+02 Score=36.44 Aligned_cols=114 Identities=12% Similarity=0.325 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHH
Q 002520 665 LREQIKAAQSKVDEKTRSRD-AIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKNAISVDD 743 (913)
Q Consensus 665 LKaKIdeLekEIEeL~kqRd-EInaELqeLReERdELeSeLKkLVeEIkrLReEInEKrKEIesLQSeLsKLrS~KSVEE 743 (913)
.+.+++.+++..+.-...+. ++..++..+.++-..+...|+.+-........++.....+-+-|+.+|+ ++-++
T Consensus 138 ~q~ELee~q~~Hqeql~~Lt~aHq~~l~sL~~k~~~Le~~L~~le~~r~~e~~~La~~q~e~d~L~~qLs-----k~~~~ 212 (739)
T PF07111_consen 138 SQRELEEAQRLHQEQLSSLTQAHQEALASLTSKAEELEKSLESLETRRAGEAKELAEAQREADLLREQLS-----KTQEE 212 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HhHHH
Confidence 34444444443333222222 3555556666666666666655555444444555555555555555554 23344
Q ss_pred HHHH---HHHHHHHHhhcC----C--CcHHHHH-HHHHHHHHHHHHHHhh
Q 002520 744 IDGS---IRNMEHRIAHET----L--PLKEEKQ-IIREIKQLKQRREQIS 783 (913)
Q Consensus 744 LQeE---IkeLE~QIQheS----L--sLqEEKQ-lIrEISQLEkeRKdV~ 783 (913)
|..+ ...|-.-|.... . ...-||+ +...++.|+..|..+.
T Consensus 213 le~q~tlv~~LR~YvGeq~p~~~~~~~we~Er~~L~~tVq~L~edR~~L~ 262 (739)
T PF07111_consen 213 LEAQVTLVEQLRKYVGEQVPPEVHSQAWEPEREELLETVQHLQEDRDALQ 262 (739)
T ss_pred HHHHHHHHHHHHHHHhhhCCcccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4443 222222221111 1 2345555 7777777776665443
No 340
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=78.62 E-value=48 Score=39.03 Aligned_cols=54 Identities=13% Similarity=0.208 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 664 NLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARES 717 (913)
Q Consensus 664 eLKaKIdeLekEIEeL~kqRdEInaELqeLReERdELeSeLKkLVeEIkrLReE 717 (913)
.|+.++.+-.+....+..++..+.++-.+++++....+..|+.+..+..+++.+
T Consensus 17 ~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~ 70 (459)
T KOG0288|consen 17 DLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEE 70 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444444444444444443
No 341
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=78.59 E-value=63 Score=37.25 Aligned_cols=49 Identities=8% Similarity=0.080 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 671 AAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLK 719 (913)
Q Consensus 671 eLekEIEeL~kqRdEInaELqeLReERdELeSeLKkLVeEIkrLReEIn 719 (913)
+|+.+-+++..++-....-+.+.+.+.+.++.-++.+.++..++.-.++
T Consensus 103 qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~ 151 (401)
T PF06785_consen 103 QLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQLD 151 (401)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHH
Confidence 3333333444444444444444444444444444444444333333333
No 342
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=78.49 E-value=30 Score=35.22 Aligned_cols=45 Identities=11% Similarity=0.278 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhh
Q 002520 707 AISDERSARESLKSKRQEIDSVQSRINMMKNAISVDDIDGSIRNMEHRIAH 757 (913)
Q Consensus 707 LVeEIkrLReEInEKrKEIesLQSeLsKLrS~KSVEELQeEIkeLE~QIQh 757 (913)
..+++..++..+....++|+.|+. +...+++|+.+|..|......
T Consensus 25 ~~~e~~~~k~ql~~~d~~i~~Lk~------~~~d~eeLk~~i~~lq~~~~~ 69 (155)
T PF06810_consen 25 VKEERDNLKTQLKEADKQIKDLKK------SAKDNEELKKQIEELQAKNKT 69 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh------ccCCHHHHHHHHHHHHHHHHH
Confidence 344555555556666666665554 357888999888888877543
No 343
>PRK09343 prefoldin subunit beta; Provisional
Probab=78.49 E-value=37 Score=33.17 Aligned_cols=40 Identities=18% Similarity=0.243 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 807 KFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLG 846 (913)
Q Consensus 807 KELKKEIDELReKIkkLekELEeLkkKIeEAqaELdELqe 846 (913)
+.+++.++-+..+|+.+++..+.+.+++.+.+..|.++..
T Consensus 74 ~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll~ 113 (121)
T PRK09343 74 KELKERKELLELRSRTLEKQEKKLREKLKELQAKINEMLS 113 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444455555555555555555555555555443
No 344
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=78.31 E-value=34 Score=31.16 Aligned_cols=27 Identities=26% Similarity=0.279 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 817 RENVIKAEAATQAVKKLHREESEKLKR 843 (913)
Q Consensus 817 ReKIkkLekELEeLkkKIeEAqaELdE 843 (913)
.+++..+..+++.+.+++..+..++.+
T Consensus 68 ~~~~~~~~~~i~~l~~~~~~l~~~l~~ 94 (106)
T PF01920_consen 68 EERIEKLEKEIKKLEKQLKYLEKKLKE 94 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333
No 345
>PLN02678 seryl-tRNA synthetase
Probab=77.91 E-value=5.7 Score=46.58 Aligned_cols=27 Identities=15% Similarity=0.281 Sum_probs=19.2
Q ss_pred CcHHHHH-HHHHHHHHHHHHHHhhhccc
Q 002520 761 PLKEEKQ-IIREIKQLKQRREQISSSIG 787 (913)
Q Consensus 761 sLqEEKQ-lIrEISQLEkeRKdV~snIs 787 (913)
.|.++++ ++.++.+|+..|..+...++
T Consensus 37 ~ld~~~r~l~~~~e~lr~erN~~sk~I~ 64 (448)
T PLN02678 37 ALDKEWRQRQFELDSLRKEFNKLNKEVA 64 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666656 88888888888877655554
No 346
>cd07656 F-BAR_srGAP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Slit-Robo GTPase Activating Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Slit-Robo GTPase Activating Proteins (srGAPs) are Rho GAPs that interact with Robo1, the transmembrane receptor of Slit proteins. Slit proteins are secreted proteins that control axon guidance and the migration of neurons and leukocytes. Vertebrates contain three isoforms of srGAPs, all of which are expressed during embryonic and early development in the nervous system but with different localization and timing. srGAPs contain an N-terminal F-BAR domain, a Rho GAP domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=77.85 E-value=1.1e+02 Score=33.26 Aligned_cols=76 Identities=13% Similarity=0.160 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 812 EADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQ----------EAYKHWQSLKKQAYDKNQHFWKYKD 881 (913)
Q Consensus 812 EIDELReKIkkLekELEeLkkKIeEAqaELdELqeElrAaeEeRQ----------EAyekIkELRkQ~DeLNsEFyq~Rr 881 (913)
....+...+...-.++...++.+..+..+-......++.++..+. ..+.++..+...++.....|.....
T Consensus 118 ~~~~lq~el~~~~~eL~k~kK~Y~~~~~ea~~A~~K~~~ae~~~~k~~~~~~~~~~~~~~~~~~~~~~eK~k~k~~~~~~ 197 (241)
T cd07656 118 IGSQLHDELLRVLNELQTAMKTYHTYHAESKSAERKLKEAEKQEEKQEQSPEKKLERSRSSKKIEKEVEKRQAKYSEAKL 197 (241)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444445555555555555555544555554444443 1233344455555555555655555
Q ss_pred HHHHHH
Q 002520 882 DTKQAN 887 (913)
Q Consensus 882 ~l~kAR 887 (913)
.+.+||
T Consensus 198 k~~~ak 203 (241)
T cd07656 198 KCTKAR 203 (241)
T ss_pred HHHHHH
Confidence 555555
No 347
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=77.75 E-value=37 Score=31.98 Aligned_cols=15 Identities=33% Similarity=0.651 Sum_probs=6.6
Q ss_pred CcHHHHHHHHHHHHH
Q 002520 761 PLKEEKQIIREIKQL 775 (913)
Q Consensus 761 sLqEEKQlIrEISQL 775 (913)
.+.+=+.++.+|..|
T Consensus 28 ~~~E~~~v~~EL~~l 42 (105)
T cd00632 28 QLNENKKALEELEKL 42 (105)
T ss_pred HHHHHHHHHHHHHcC
Confidence 333333355555444
No 348
>cd07657 F-BAR_Fes_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) and Fer (Fes related) tyrosine kinases. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), and Fer (Fes related) are cytoplasmic (or nonreceptor) tyrosine kinases that play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Although Fes and Fer show redundancy in their biological functions, they show differences in their expression patterns. Fer is ubiquitously expressed while Fes is expressed predominantly in myeloid and endothelial cells. Fes and Fer contain an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a posit
Probab=77.69 E-value=1.1e+02 Score=33.15 Aligned_cols=17 Identities=18% Similarity=0.130 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 002520 826 ATQAVKKLHREESEKLK 842 (913)
Q Consensus 826 ELEeLkkKIeEAqaELd 842 (913)
+++..++.+..+..+..
T Consensus 127 el~k~Kk~Y~~~~~e~e 143 (237)
T cd07657 127 EVEKLKSEYQKLLEDYK 143 (237)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 349
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=77.67 E-value=1.2e+02 Score=33.63 Aligned_cols=87 Identities=2% Similarity=0.080 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHH
Q 002520 671 AAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKNAISVDDIDGSIRN 750 (913)
Q Consensus 671 eLekEIEeL~kqRdEInaELqeLReERdELeSeLKkLVeEIkrLReEInEKrKEIesLQSeLsKLrS~KSVEELQeEIke 750 (913)
.|+.-|.+..-++.+...-.....-+.......|=..-+.|..|..++.+..-.-+.|-..|.-+- +.-.||..-...
T Consensus 75 ~LeeliNkWs~el~~Qe~vF~~q~~qvNaWDr~LI~ngekI~~Ly~e~~~vk~~qkrLdq~L~~I~--sqQ~ELE~~L~~ 152 (254)
T KOG2196|consen 75 TLEELINKWSLELEEQERVFLQQATQVNAWDRTLIENGEKISGLYNEVVKVKLDQKRLDQELEFIL--SQQQELEDLLDP 152 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHhHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 333334444444444444333333333333333434444555555555544433333333333221 234455555666
Q ss_pred HHHHHhhcC
Q 002520 751 MEHRIAHET 759 (913)
Q Consensus 751 LE~QIQheS 759 (913)
||.+++...
T Consensus 153 lE~k~~~~~ 161 (254)
T KOG2196|consen 153 LETKLELQS 161 (254)
T ss_pred HHHHHhccc
Confidence 666655533
No 350
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=77.60 E-value=17 Score=44.04 Aligned_cols=48 Identities=10% Similarity=0.253 Sum_probs=24.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 798 QKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLL 845 (913)
Q Consensus 798 EKenIqEQIKELKKEIDELReKIkkLekELEeLkkKIeEAqaELdELq 845 (913)
+++.++..|.+++..+++++..|.....++..|+..++.++-.+.++.
T Consensus 101 krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~ 148 (907)
T KOG2264|consen 101 KRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELR 148 (907)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHH
Confidence 444555555555555555555555555555555555554444444443
No 351
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=77.40 E-value=58 Score=38.65 Aligned_cols=22 Identities=27% Similarity=0.191 Sum_probs=12.4
Q ss_pred CCccccCcccccccccccccCC
Q 002520 459 GSVSSIPEDVNVENVGIQHAGG 480 (913)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~ 480 (913)
|...++..---+-|+.+-|||.
T Consensus 21 Gr~~~~sas~~at~~aa~~agd 42 (575)
T KOG4403|consen 21 GRSLWISASELATNVAAVVAGD 42 (575)
T ss_pred chhhhhHHHHhhcchhhhhcCC
Confidence 4444444444556667777765
No 352
>PF14992 TMCO5: TMCO5 family
Probab=76.52 E-value=1.4e+02 Score=33.70 Aligned_cols=22 Identities=23% Similarity=0.360 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc
Q 002520 714 ARESLKSKRQEIDSVQSRINMM 735 (913)
Q Consensus 714 LReEInEKrKEIesLQSeLsKL 735 (913)
+-..|+.+...|++|.+++.++
T Consensus 23 lL~ki~~~E~~iq~Le~Eit~~ 44 (280)
T PF14992_consen 23 LLQKIQEKEGAIQSLEREITKM 44 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334555555555555555443
No 353
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=76.52 E-value=63 Score=35.35 Aligned_cols=10 Identities=40% Similarity=0.750 Sum_probs=4.4
Q ss_pred HHHHHHHHHH
Q 002520 771 EIKQLKQRRE 780 (913)
Q Consensus 771 EISQLEkeRK 780 (913)
||+.|+++-+
T Consensus 44 e~~eLk~qnk 53 (230)
T PF03904_consen 44 EIQELKRQNK 53 (230)
T ss_pred HHHHHHHhhH
Confidence 4444444444
No 354
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=76.49 E-value=30 Score=32.29 Aligned_cols=26 Identities=19% Similarity=0.302 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 806 MKFLRKEADSLRENVIKAEAATQAVK 831 (913)
Q Consensus 806 IKELKKEIDELReKIkkLekELEeLk 831 (913)
|..++-++++++++-..+..++..+.
T Consensus 20 I~LLqmEieELKekn~~L~~e~~~~~ 45 (79)
T PRK15422 20 ITLLQMEIEELKEKNNSLSQEVQNAQ 45 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444433
No 355
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=76.09 E-value=2.3e+02 Score=36.12 Aligned_cols=25 Identities=24% Similarity=0.209 Sum_probs=14.4
Q ss_pred hhccccCCCCccccccccccccccc
Q 002520 391 VLQGGIDGVDERSISVDNAAVESCT 415 (913)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (913)
|.|..-.|+-.+-|-|---+-|+|.
T Consensus 395 vMqtt~GG~kGTvIrVPLK~~eA~n 419 (1259)
T KOG0163|consen 395 VMQTTKGGFKGTVIRVPLKIHEASN 419 (1259)
T ss_pred HHHhccCCccceEEEeeccHHhhcc
Confidence 4454445555566666666666663
No 356
>TIGR00020 prfB peptide chain release factor 2. In many but not all taxa, there is a conserved real translational frameshift at a TGA codon. RF-2 helps terminate translation at TGA codons and can therefore regulate its own production by readthrough when RF-2 is insufficient. There is a Pfam model called "RF-1" for the superfamily of RF-1, RF-2, mitochondrial, RF-H, etc.
Probab=76.00 E-value=48 Score=38.34 Aligned_cols=64 Identities=11% Similarity=0.339 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhhcCC--CcHHHHHHHHHHHHHHHHHHH
Q 002520 718 LKSKRQEIDSVQSRINMMKNAISVDDIDGSIRNMEHRIAHETL--PLKEEKQIIREIKQLKQRREQ 781 (913)
Q Consensus 718 InEKrKEIesLQSeLsKLrS~KSVEELQeEIkeLE~QIQheSL--sLqEEKQlIrEISQLEkeRKd 781 (913)
|....+.++.|...+..++.+..++.+..++..|+.++..-.+ ....=+++.++++.|+..+..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~le~~~~~p~~w~d~~~~~~~~ke~~~l~~~v~~ 67 (364)
T TIGR00020 2 INEVNNRIEDLTSRLDTVRGSLDPEKKKARLEELEKEMEDPNFWNDQERAQAVIKERSSLEAVLDT 67 (364)
T ss_pred chHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666777777777788999999999999999877665 444444577888888777765
No 357
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=75.65 E-value=1.8e+02 Score=34.49 Aligned_cols=15 Identities=27% Similarity=0.494 Sum_probs=8.4
Q ss_pred ccCCCCCccchhHHh
Q 002520 477 HAGGEKDDHRSKELE 491 (913)
Q Consensus 477 ~~~~~~~~~~~~~~~ 491 (913)
.+|..+-||...-|+
T Consensus 158 r~~~~k~D~QrQ~Ld 172 (593)
T KOG4807|consen 158 RGGPRKADGQRQALD 172 (593)
T ss_pred ccCccccccHHHHHH
Confidence 355566666655544
No 358
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=75.56 E-value=1.2e+02 Score=32.64 Aligned_cols=64 Identities=19% Similarity=0.344 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 669 IKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRI 732 (913)
Q Consensus 669 IdeLekEIEeL~kqRdEInaELqeLReERdELeSeLKkLVeEIkrLReEInEKrKEIesLQSeL 732 (913)
|.-|+.++.+...++..-..+|-.+|...+++.+.++..-..+..++..+..+..+++....+|
T Consensus 12 IsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~EL 75 (202)
T PF06818_consen 12 ISLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENEL 75 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHH
Confidence 3333333333333333333444444445555555455554455555555555555544444443
No 359
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=75.47 E-value=57 Score=37.56 Aligned_cols=24 Identities=42% Similarity=0.585 Sum_probs=12.4
Q ss_pred CcHHHHHHHHHHHHHHHHHHHhhhccc
Q 002520 761 PLKEEKQIIREIKQLKQRREQISSSIG 787 (913)
Q Consensus 761 sLqEEKQlIrEISQLEkeRKdV~snIs 787 (913)
+|..=|+++ ++|+..+++....|+
T Consensus 329 Plv~IKqAl---~kLk~EI~qMdvrIG 352 (359)
T PF10498_consen 329 PLVKIKQAL---TKLKQEIKQMDVRIG 352 (359)
T ss_pred HHHHHHHHH---HHHHHHHHHhhhhhh
Confidence 454444433 566666665544444
No 360
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=75.39 E-value=45 Score=30.39 Aligned_cols=64 Identities=13% Similarity=0.156 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 810 RKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKN 873 (913)
Q Consensus 810 KKEIDELReKIkkLekELEeLkkKIeEAqaELdELqeElrAaeEeRQEAyekIkELRkQ~DeLN 873 (913)
++-++++++.++.+..++..+..+....-.+.+.+.+..+...+..+..+..+..+-.....++
T Consensus 25 ~~~l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~k~~~v~~~~~~v~~~g~~v~~l~ 88 (90)
T PF06103_consen 25 KKTLDEVNKTIDTLQEQVDPITKEINDLLHNTNELLEDVNEKLEKVDPVFEAVADLGESVSELN 88 (90)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444444455555444444455555555555555555555555555555444443
No 361
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=75.29 E-value=74 Score=32.48 Aligned_cols=84 Identities=12% Similarity=0.263 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhccC
Q 002520 664 NLREQIKAAQSKVDEKTRSRDAIRDDIQTIRA---SYKEYAEKLEAAISDERSARESLKSKRQEID---SVQSRINMMKN 737 (913)
Q Consensus 664 eLKaKIdeLekEIEeL~kqRdEInaELqeLRe---ERdELeSeLKkLVeEIkrLReEInEKrKEIe---sLQSeLsKLrS 737 (913)
..+.+...+..+++.++.++...+..|..++. .-.+|..++..+..++.....++.....++. .|...|...+
T Consensus 17 ~~K~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~~~~~~~e~~l~~~~~~~ai~~al~~ak- 95 (155)
T PF06810_consen 17 APKAKVDKVKEERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNKTAKEEYEAKLAQMKKDSAIKSALKGAK- 95 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-
Confidence 35666666677777777777777777777766 5556666666666666655555554444443 4555555554
Q ss_pred CCCHHHHHHHH
Q 002520 738 AISVDDIDGSI 748 (913)
Q Consensus 738 ~KSVEELQeEI 748 (913)
++...-|-..|
T Consensus 96 akn~~av~all 106 (155)
T PF06810_consen 96 AKNPKAVKALL 106 (155)
T ss_pred CCCHHHHHHhc
Confidence 56655555443
No 362
>cd08915 V_Alix_like Protein-interacting V-domain of mammalian Alix and related domains. This superfamily contains the V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Bro1, and Rim20 all interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. The Alix V-domain contains
Probab=75.10 E-value=1.5e+02 Score=33.27 Aligned_cols=35 Identities=11% Similarity=0.054 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 852 DEIRQEAYKHWQSLKKQAYDKNQHFWKYKDDTKQA 886 (913)
Q Consensus 852 eEeRQEAyekIkELRkQ~DeLNsEFyq~Rr~l~kA 886 (913)
...|+..+..|......+.++.+..-+-+.+++..
T Consensus 290 ~~~r~~~l~~L~~ay~~y~el~~~l~eG~~FY~dL 324 (342)
T cd08915 290 LDPREEALQDLEASYKKYLELKENLNEGSKFYNDL 324 (342)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 34444444555444444444444444444444433
No 363
>cd07657 F-BAR_Fes_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) and Fer (Fes related) tyrosine kinases. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), and Fer (Fes related) are cytoplasmic (or nonreceptor) tyrosine kinases that play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Although Fes and Fer show redundancy in their biological functions, they show differences in their expression patterns. Fer is ubiquitously expressed while Fes is expressed predominantly in myeloid and endothelial cells. Fes and Fer contain an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a posit
Probab=75.05 E-value=1.3e+02 Score=32.63 Aligned_cols=67 Identities=15% Similarity=0.153 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 811 KEADSLRENVIKAEAATQAVKKLHREESE-------KLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFW 877 (913)
Q Consensus 811 KEIDELReKIkkLekELEeLkkKIeEAqa-------ELdELqeElrAaeEeRQEAyekIkELRkQ~DeLNsEFy 877 (913)
.+++..+++..++..+.+..+.+++++.. ++...+..+.....++..+.....-....++.....||
T Consensus 126 ~el~k~Kk~Y~~~~~e~e~Ar~k~e~a~~~~~~~~~~~eKak~k~~~~~~k~~~akNeY~l~l~~aN~~q~~yY 199 (237)
T cd07657 126 DEVEKLKSEYQKLLEDYKAAKSKFEEAVVKGGRGGRKLDKARDKYQKACRKLHLCHNDYVLALLEAQEHEEDYR 199 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444433 33344444444444444444444444444444444333
No 364
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=74.50 E-value=51 Score=29.91 Aligned_cols=30 Identities=23% Similarity=0.306 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 813 ADSLRENVIKAEAATQAVKKLHREESEKLK 842 (913)
Q Consensus 813 IDELReKIkkLekELEeLkkKIeEAqaELd 842 (913)
|..||.++..+...+..+..+++....++.
T Consensus 35 IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~ 64 (74)
T PF12329_consen 35 IKKLRAKIKELEKQIKELKKKLEELEKELE 64 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333
No 365
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=74.46 E-value=36 Score=30.21 Aligned_cols=49 Identities=12% Similarity=0.224 Sum_probs=28.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 797 DQKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLL 845 (913)
Q Consensus 797 eEKenIqEQIKELKKEIDELReKIkkLekELEeLkkKIeEAqaELdELq 845 (913)
.-|+.|++++...+...-....+++.++....+|..++..++.++.+++
T Consensus 11 rakQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 11 RAKQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455666666666666666666666666666666655555555555443
No 366
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=74.43 E-value=1.7e+02 Score=35.42 Aligned_cols=19 Identities=32% Similarity=0.141 Sum_probs=9.9
Q ss_pred ccccCCCCCCCccCCCccc
Q 002520 352 VSVFHNSDAKSETETGFDS 370 (913)
Q Consensus 352 ~~~~~~~d~k~~~~~~~~~ 370 (913)
-|.+-++-+++-++..|-+
T Consensus 73 gs~~~~s~~t~~g~g~fgs 91 (508)
T KOG3091|consen 73 GSGFGTSTATGAGGGFFGS 91 (508)
T ss_pred ccccccCCccCCccCcccc
Confidence 4455555555555554443
No 367
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=74.41 E-value=51 Score=35.74 Aligned_cols=55 Identities=18% Similarity=0.254 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 814 DSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQ 868 (913)
Q Consensus 814 DELReKIkkLekELEeLkkKIeEAqaELdELqeElrAaeEeRQEAyekIkELRkQ 868 (913)
+...+...+++.++++..++.+.++.+...++.+.+....+-+...++-+.|+++
T Consensus 154 ~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~ 208 (216)
T KOG1962|consen 154 DKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQ 208 (216)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333333333333333333333333
No 368
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=74.37 E-value=45 Score=33.34 Aligned_cols=54 Identities=13% Similarity=0.383 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Q 002520 697 YKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKNAISVDDIDGSIRNME 752 (913)
Q Consensus 697 RdELeSeLKkLVeEIkrLReEInEKrKEIesLQSeLsKLrS~KSVEELQeEIkeLE 752 (913)
.+.+..+|....+-.+..++++.+.+..+..+...+.... ..+..|+.+|..++
T Consensus 70 Id~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~--~~V~~Le~ki~~ie 123 (126)
T PF07889_consen 70 IDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQ--QMVEGLEGKIDEIE 123 (126)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH--HHHHHHHHHHHHHh
Confidence 3333333333333334444444444444444433333222 33444444444443
No 369
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=74.33 E-value=2.3e+02 Score=36.13 Aligned_cols=94 Identities=18% Similarity=0.231 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHH-------HHHHHHH
Q 002520 799 KDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFK-------AADEIRQE-------AYKHWQS 864 (913)
Q Consensus 799 KenIqEQIKELKKEIDELReKIkkLekELEeLkkKIeEAqaELdELqeElr-------AaeEeRQE-------AyekIkE 864 (913)
+++++..-+.+++....++++-.++......-.+.++.+-.+|.+++.... .++..+.. -++.+..
T Consensus 187 ~~r~q~~~r~~~kqa~~~~~~we~l~~~~~~w~k~v~~~le~l~elq~a~~el~~~l~~ae~~~~~w~pvgdl~idsl~~ 266 (966)
T KOG4286|consen 187 EERAQNVTRLLRKQAEEVNTEWEKLNLHSADWQRKIDETLERLQELQEATDELDLKLRQAEVIKGSWQPVGDLLIDSLQD 266 (966)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhccccHHHHHHhHHHH
Confidence 334444444455555555555554444444444444444444444333333 33332221 2566667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 002520 865 LKKQAYDKNQHFWKYKDDTKQANDLASK 892 (913)
Q Consensus 865 LRkQ~DeLNsEFyq~Rr~l~kARdLAa~ 892 (913)
-+...+.+..+|--.+....-+.|||++
T Consensus 267 h~e~~~~~~~ei~p~~~~v~~vndla~q 294 (966)
T KOG4286|consen 267 HLEKVKALRGEIAPLKENVSHVNDLARQ 294 (966)
T ss_pred HHHHHHHHHhhcchHhhchhhHHHHHHH
Confidence 7777777777777777778888888875
No 370
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=74.29 E-value=1.1e+02 Score=31.68 Aligned_cols=62 Identities=18% Similarity=0.175 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 807 KFLRKEADSLRENVIK----AEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQ 868 (913)
Q Consensus 807 KELKKEIDELReKIkk----LekELEeLkkKIeEAqaELdELqeElrAaeEeRQEAyekIkELRkQ 868 (913)
.+-.+.+..++..+.. .++++.-+.++|+.++.+|.-+..-....+.+...+.+.+++..++
T Consensus 62 eEetkrLa~ireeLE~l~dP~RkEv~~vRkkID~vNreLkpl~~~cqKKEkEykealea~nEknke 127 (159)
T PF04949_consen 62 EEETKRLAEIREELEVLADPMRKEVEMVRKKIDSVNRELKPLGQSCQKKEKEYKEALEAFNEKNKE 127 (159)
T ss_pred HHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555554444 3345666666666666666665555555555544444444444333
No 371
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=73.91 E-value=90 Score=30.31 Aligned_cols=40 Identities=3% Similarity=0.055 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Q 002520 715 RESLKSKRQEIDSVQSRINMMKNAISVDDIDGSIRNMEHR 754 (913)
Q Consensus 715 ReEInEKrKEIesLQSeLsKLrS~KSVEELQeEIkeLE~Q 754 (913)
...+.....=|......|.......++.+++..++.++.-
T Consensus 6 ~~~~~~l~~Wl~~~e~~l~~~~~~~d~~~~~~~l~~~~~~ 45 (213)
T cd00176 6 LRDADELEAWLSEKEELLSSTDYGDDLESVEALLKKHEAL 45 (213)
T ss_pred HHhHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHHH
Confidence 3334444444444344443332223566666666555443
No 372
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=73.62 E-value=1.8e+02 Score=33.76 Aligned_cols=35 Identities=11% Similarity=0.170 Sum_probs=16.9
Q ss_pred hhhhcccccccc--CcceeeccCCCCCchHHHHHHHHH
Q 002520 637 SESRNIGVEVVK--QPFYFLVKVPRYDDENLREQIKAA 672 (913)
Q Consensus 637 VEe~kE~Ld~LR--r~fYf~Vr~rRLdDPeLKaKIdeL 672 (913)
++...+.|.+.+ +++|..++|.. .+|.+-+++...
T Consensus 140 ~~~~~~~l~V~~~~~s~vi~~~~~~-~~p~~aa~v~~~ 176 (458)
T COG3206 140 LDDLLESLKVLRAGRSRVIELSYTS-NDPKLAAKLANA 176 (458)
T ss_pred HHHHHhhcEEeecCceEEEEEEeec-CChHHHHHHHHH
Confidence 455555555555 55552223322 356555555433
No 373
>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=73.55 E-value=2.7e+02 Score=35.55 Aligned_cols=211 Identities=9% Similarity=0.059 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhhcC-------
Q 002520 687 RDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKNAISVDDIDGSIRNMEHRIAHET------- 759 (913)
Q Consensus 687 naELqeLReERdELeSeLKkLVeEIkrLReEInEKrKEIesLQSeLsKLrS~KSVEELQeEIkeLE~QIQheS------- 759 (913)
..++..+++.++.+.+...-+..+|.+.+.++.+++.+.+.|+.-+.-.-....+.-++.+|..|..++..++
T Consensus 615 ~~Kv~TL~~~~k~~~~~~~~~~~~i~~~q~e~~klqeq~~Al~~i~~~~fa~ID~~Sa~rqIael~~~lE~L~~t~~~~~ 694 (1104)
T COG4913 615 DAKVETLRETVKAMLSREDFYMIKIMRQQGEYIKLQEQANALAHIQALNFASIDLPSAQRQIAELQARLERLTHTQSDIA 694 (1104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcchhhcchhhHHHHHHHHHHHHHHhcCChhHHH
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHhHHHHHHHHHHH------------------HHHHHHHHHHHH
Q 002520 760 LPLKEEKQIIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKFL------------------RKEADSLRENVI 821 (913)
Q Consensus 760 LsLqEEKQlIrEISQLEkeRKdV~snIs~kakIEqSLeEKenIqEQIKEL------------------KKEIDELReKIk 821 (913)
+.-..+-.+....+-|+.+.+.-...-. .+.+.+.+-+.+-.++..+ ..-..++-...+
T Consensus 695 ~~~~~l~aaQT~~~vler~~~~~~~e~~---~~k~~lkrA~~~~~k~~si~~~~~t~~~q~~~~a~f~q~a~~~h~~~vd 771 (1104)
T COG4913 695 IAKAALDAAQTRQKVLERQYQQEVTECA---GLKKDLKRAAMLSRKVHSIAKQGMTGALQALGAAHFPQVAPEQHDDIVD 771 (1104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhhhhhChHhhhhhhh
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCHHHHHH
Q 002520 822 KAE-AATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKDDTKQANDLASKGDREALQH 900 (913)
Q Consensus 822 kLe-kELEeLkkKIeEAqaELdELqeElrAaeEeRQEAyekIkELRkQ~DeLNsEFyq~Rr~l~kARdLAa~~dv~eLqe 900 (913)
.-+ +-.+.|+++|++.++.|. .-.+.+.-.+....+.+..-+.++..--...=+|-+-+...+.-+--.-.+-.++
T Consensus 772 ~~~~~~r~~LqkrIDa~na~Lr---rl~~~Iig~m~~~k~~~~a~~~e~~ael~~ipey~~rL~~L~~D~Lpef~arF~~ 848 (1104)
T COG4913 772 IERIEHRRQLQKRIDAVNARLR---RLREEIIGRMSDAKKEDTAALSEVGAELDDIPEYLARLQTLTEDALPEFLARFQE 848 (1104)
T ss_pred HHHHHHHHHHHHhhhhhHHHHH---HHHHHHHHHHHHHHhcchhhhhhhccCHhHHHHHHHHHHhhhhhhHHHHHHHHHH
Q ss_pred HHH
Q 002520 901 LCV 903 (913)
Q Consensus 901 lc~ 903 (913)
|.+
T Consensus 849 llN 851 (1104)
T COG4913 849 LLN 851 (1104)
T ss_pred Hhh
No 374
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=73.55 E-value=24 Score=33.24 Aligned_cols=26 Identities=4% Similarity=0.118 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 805 KMKFLRKEADSLRENVIKAEAATQAV 830 (913)
Q Consensus 805 QIKELKKEIDELReKIkkLekELEeL 830 (913)
+++.+...+..+.+++..+.+++.++
T Consensus 71 ~~e~le~~i~~l~~~~~~l~~~~~el 96 (105)
T cd00632 71 RLETIELRIKRLERQEEDLQEKLKEL 96 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333
No 375
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=73.17 E-value=25 Score=40.78 Aligned_cols=73 Identities=14% Similarity=0.353 Sum_probs=53.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 002520 663 ENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASY------KEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMM 735 (913)
Q Consensus 663 PeLKaKIdeLekEIEeL~kqRdEInaELqeLReER------dELeSeLKkLVeEIkrLReEInEKrKEIesLQSeLsKL 735 (913)
|.|..++..+..++..+..++..++..+..++... .+....+..+......+..++.++..++..|+..+...
T Consensus 330 ~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 330 PELKEKLEELEEELEELKEELEKLKKNLKKLKKLKKQGKLPPEKKEQLKKLKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 88999999999999999988888888877776532 23344466666667777777777777777777666544
No 376
>TIGR01612 235kDa-fam reticulocyte binding/rhoptry protein. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Probab=73.11 E-value=4.3e+02 Score=37.82 Aligned_cols=64 Identities=16% Similarity=0.240 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhcCCHHHHH
Q 002520 836 EESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKDDTKQAND-LASKGDREALQ 899 (913)
Q Consensus 836 EAqaELdELqeElrAaeEeRQEAyekIkELRkQ~DeLNsEFyq~Rr~l~kARd-LAa~~dv~eLq 899 (913)
+...++..++.....+.+..+....+|..+.+.-+....+|......+.+..+ -.+.-++++++
T Consensus 1108 k~~~eI~kik~~i~~l~~~ID~~i~kl~~ikkks~~~~~e~~~~~~~~ek~~~kt~~n~~~k~Ie 1172 (2757)
T TIGR01612 1108 KYADEINKIKDDIKNLDQKIDHHIKALEEIKKKSENYIDEIKAQINDLEDVADKAISNDDPEEIE 1172 (2757)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhcchhhhhcchhhcccCHHHHH
Confidence 34455666777777778888888888888888888887777776666666655 44455666665
No 377
>PF10368 YkyA: Putative cell-wall binding lipoprotein; InterPro: IPR019454 The YkyA family of proteins contain a lipoprotein signal and a hydrolase domain. They are similar to cell wall binding proteins and might also be recognisable by a host immune defence system. It is thus likely that they function in pathways important for pathogenicity []. ; PDB: 2AP3_A.
Probab=73.05 E-value=1.3e+02 Score=31.93 Aligned_cols=39 Identities=13% Similarity=0.123 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002520 853 EIRQEAYKHWQSLKKQAYDKNQHFWKYKDDTKQANDLAS 891 (913)
Q Consensus 853 EeRQEAyekIkELRkQ~DeLNsEFyq~Rr~l~kARdLAa 891 (913)
..+++.+..++...+++......|.++....++.+.--+
T Consensus 160 ~~l~~ki~~iN~~y~~~~~~~~~fn~~t~~yN~~K~~~y 198 (204)
T PF10368_consen 160 KQLDEKIKAINQSYKEVNKQKEKFNEYTKKYNEEKQDFY 198 (204)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666788888888888888888888888888876554
No 378
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=73.02 E-value=1.2 Score=53.62 Aligned_cols=36 Identities=11% Similarity=0.047 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhc-CCHHHHHHHH
Q 002520 867 KQAYDKNQHFWKYKDDTKQANDLASK-GDREALQHLC 902 (913)
Q Consensus 867 kQ~DeLNsEFyq~Rr~l~kARdLAa~-~dv~eLqelc 902 (913)
.++..+...|..++..+........- .+..+|++.+
T Consensus 330 ~Ei~~Lk~~~~~~k~Il~~v~k~~~l~~~~~~Le~~~ 366 (619)
T PF03999_consen 330 EEIERLKEEYESRKPILELVEKWESLWEEMEELEESS 366 (619)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444555544444443332 3444444433
No 379
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=72.87 E-value=60 Score=29.46 Aligned_cols=18 Identities=17% Similarity=0.431 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 002520 713 SARESLKSKRQEIDSVQS 730 (913)
Q Consensus 713 rLReEInEKrKEIesLQS 730 (913)
.++..+.....++..|+.
T Consensus 51 ~l~~~~~~~e~~~~~l~~ 68 (74)
T PF12329_consen 51 ELKKKLEELEKELESLEE 68 (74)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333334444444444443
No 380
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=72.81 E-value=1.8e+02 Score=33.32 Aligned_cols=28 Identities=18% Similarity=0.361 Sum_probs=17.9
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 661 DDENLREQIKAAQSKVDEKTRSRDAIRD 688 (913)
Q Consensus 661 dDPeLKaKIdeLekEIEeL~kqRdEIna 688 (913)
+++.+..++..++..+..+..++..+..
T Consensus 90 ~~~~~~~~~~~~~~~l~~~~~q~~~l~~ 117 (421)
T TIGR03794 90 FQPELRERLQESYQKLTQLQEQLEEVRN 117 (421)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466667777777777766666655544
No 381
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=72.77 E-value=48 Score=37.32 Aligned_cols=61 Identities=18% Similarity=0.260 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhcc
Q 002520 676 VDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISD-------ERSARESLKSKRQEIDSVQSRINMMK 736 (913)
Q Consensus 676 IEeL~kqRdEInaELqeLReERdELeSeLKkLVeE-------IkrLReEInEKrKEIesLQSeLsKLr 736 (913)
|.-|+.++.+-...+.....+..+|.+||...+++ ....+-.+++-++||++|++.+..++
T Consensus 70 iRHLkakLkes~~~l~dRetEI~eLksQL~RMrEDWIEEECHRVEAQLALKEARkEIkQLkQvieTmr 137 (305)
T PF15290_consen 70 IRHLKAKLKESENRLHDRETEIDELKSQLARMREDWIEEECHRVEAQLALKEARKEIKQLKQVIETMR 137 (305)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444445555555555555432 22333345566666666666555554
No 382
>COG5244 NIP100 Dynactin complex subunit involved in mitotic spindle partitioning in anaphase B [Cell division and chromosome partitioning]
Probab=72.68 E-value=24 Score=41.98 Aligned_cols=107 Identities=8% Similarity=0.039 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHhhhcccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 768 IIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQ 847 (913)
Q Consensus 768 lIrEISQLEkeRKdV~snIs~kakIEqSLeEKenIqEQIKELKKEIDELReKIkkLekELEeLkkKIeEAqaELdELqeE 847 (913)
....|..|...++......+ .++.+..+...-...+..+--..-.|...|+++..+++.|++++--++..+.--.
T Consensus 182 ~~~d~v~l~~~~~~t~n~~g---s~~~~~~~~~~r~~~~d~L~~~N~~L~~~Id~ln~eLE~l~~Ql~~L~s~~~iev-- 256 (669)
T COG5244 182 QVYDMVELVSDISETLNRNG---SIQRSSVRECERSNIHDVLFLVNGILDGVIDELNGELERLRRQLVSLMSSHGIEV-- 256 (669)
T ss_pred HHHHHHHHHhhhhhccccch---HHHHHHHHHHHhccchHHHhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHhccccc--
Confidence 66667777777666544443 3333332211112234444445555666666666666666654444443332111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 848 FKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKD 881 (913)
Q Consensus 848 lrAaeEeRQEAyekIkELRkQ~DeLNsEFyq~Rr 881 (913)
...-++.+..+++..+..+..-+..+.||+|.
T Consensus 257 --e~N~R~~~~L~KF~sle~~v~~L~~~~~Q~k~ 288 (669)
T COG5244 257 --EENSRLKATLEKFQSLELKVNTLQEELYQNKL 288 (669)
T ss_pred --cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 11123333455666666666666666665553
No 383
>PRK00578 prfB peptide chain release factor 2; Validated
Probab=72.62 E-value=87 Score=36.30 Aligned_cols=62 Identities=10% Similarity=0.354 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhhcCC--CcHHHHHHHHHHHHHHHHHHH
Q 002520 720 SKRQEIDSVQSRINMMKNAISVDDIDGSIRNMEHRIAHETL--PLKEEKQIIREIKQLKQRREQ 781 (913)
Q Consensus 720 EKrKEIesLQSeLsKLrS~KSVEELQeEIkeLE~QIQheSL--sLqEEKQlIrEISQLEkeRKd 781 (913)
...+.++.|...+..++++..++.+..++..|+..+..-.+ ....=+++.++++.|+..+..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~p~~~~d~~~~~~l~ke~~~L~~iv~~ 67 (367)
T PRK00578 4 EISERLKDLDEKLENIRGVLDVDALKERLEELEAEAEDPDFWNDQERAQKVTKELSSLKAKLDT 67 (367)
T ss_pred HHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666678899999999999998876654 344334477777777776654
No 384
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=72.58 E-value=2.7e+02 Score=35.15 Aligned_cols=20 Identities=30% Similarity=0.225 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 002520 808 FLRKEADSLRENVIKAEAAT 827 (913)
Q Consensus 808 ELKKEIDELReKIkkLekEL 827 (913)
.+..++..+|+..+.+..++
T Consensus 475 dL~~ELqqLReERdRl~aeL 494 (739)
T PF07111_consen 475 DLSLELQQLREERDRLDAEL 494 (739)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555544
No 385
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=72.57 E-value=46 Score=31.44 Aligned_cols=36 Identities=25% Similarity=0.421 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 806 MKFLRKEADSLRENVIKAEAATQAVKKLHREESEKL 841 (913)
Q Consensus 806 IKELKKEIDELReKIkkLekELEeLkkKIeEAqaEL 841 (913)
++.+++.++.+++++..+++.+..+..++..+...+
T Consensus 89 ~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l 124 (129)
T cd00890 89 IEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEEL 124 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444443333333333
No 386
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=72.06 E-value=20 Score=33.88 Aligned_cols=32 Identities=13% Similarity=0.273 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 803 EEKMKFLRKEADSLRENVIKAEAATQAVKKLH 834 (913)
Q Consensus 803 qEQIKELKKEIDELReKIkkLekELEeLkkKI 834 (913)
..+++.+++.++.+.+.+..+..++..+...+
T Consensus 93 ~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l 124 (129)
T cd00890 93 KKRLETLEKQIEKLEKQLEKLQDQITELQEEL 124 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444333
No 387
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=72.01 E-value=41 Score=36.44 Aligned_cols=44 Identities=18% Similarity=0.264 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 839 EKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKDD 882 (913)
Q Consensus 839 aELdELqeElrAaeEeRQEAyekIkELRkQ~DeLNsEFyq~Rr~ 882 (913)
+++..++.+.+....+...+-.+...+++|.+.++.+|.+...+
T Consensus 158 ~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee 201 (216)
T KOG1962|consen 158 ADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEE 201 (216)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 34444444444444444444444445555555555555544433
No 388
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=71.98 E-value=2.3e+02 Score=34.05 Aligned_cols=49 Identities=14% Similarity=0.175 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 801 QIEEKMKFLRKEADSLRENVIKAE--------AATQAVKKLHREESEKLKRLLGQFK 849 (913)
Q Consensus 801 nIqEQIKELKKEIDELReKIkkLe--------kELEeLkkKIeEAqaELdELqeElr 849 (913)
+-..|++..+...+.|+++...+- ..+..+.-+|-+++..|.++...++
T Consensus 358 naekql~~Ake~~eklkKKrssv~gtl~vahgsslDdVD~kIleak~al~evtt~lr 414 (575)
T KOG4403|consen 358 NAEKQLKEAKEMAEKLKKKRSSVFGTLHVAHGSSLDDVDHKILEAKSALSEVTTLLR 414 (575)
T ss_pred hHHHHHHHHHHHHHHHHHhhcchheeeeeccccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 333445555555555555544322 2356666666666666666555444
No 389
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=71.89 E-value=78 Score=35.70 Aligned_cols=36 Identities=11% Similarity=0.271 Sum_probs=15.7
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 796 FDQKDQIEEKMKFLRKEADSLRENVIKAEAATQAVK 831 (913)
Q Consensus 796 LeEKenIqEQIKELKKEIDELReKIkkLekELEeLk 831 (913)
|.+......+|..++.++...+-.+.....+.+.+-
T Consensus 7 L~KL~et~~~V~~m~~~L~~~~~~L~~k~~e~e~ll 42 (344)
T PF12777_consen 7 LDKLKETEEQVEEMQEELEEKQPELEEKQKEAEELL 42 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444444444444444444443
No 390
>PF00015 MCPsignal: Methyl-accepting chemotaxis protein (MCP) signalling domain; InterPro: IPR004089 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the signalling domain found in several methyl-accepting chemotaxis proteins. This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016020 membrane; PDB: 2CH7_A 3ZX6_B 1QU7_A 3G6B_B 3UR1_C 3G67_B.
Probab=71.81 E-value=1.1e+02 Score=30.55 Aligned_cols=18 Identities=11% Similarity=0.237 Sum_probs=9.7
Q ss_pred CCHHHHHHHHHHHHHHHh
Q 002520 739 ISVDDIDGSIRNMEHRIA 756 (913)
Q Consensus 739 KSVEELQeEIkeLE~QIQ 756 (913)
+...-|=.+|+.|-.+..
T Consensus 75 ~gF~vvA~eir~LA~~t~ 92 (213)
T PF00015_consen 75 RGFAVVADEIRKLAEQTS 92 (213)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhhhh
Confidence 445555556666655533
No 391
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=71.77 E-value=2e+02 Score=33.27 Aligned_cols=30 Identities=7% Similarity=0.303 Sum_probs=16.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 663 ENLREQIKAAQSKVDEKTRSRDAIRDDIQT 692 (913)
Q Consensus 663 PeLKaKIdeLekEIEeL~kqRdEInaELqe 692 (913)
..|+..+..+..+++.|...+..+...+..
T Consensus 60 ~eL~~~l~~~~~Ei~~L~~~K~~le~aL~~ 89 (384)
T PF03148_consen 60 NELERELEELDEEIDLLEEEKRRLEKALEA 89 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555666666666665555555554444
No 392
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=71.27 E-value=2.1e+02 Score=33.33 Aligned_cols=16 Identities=13% Similarity=0.023 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 002520 862 WQSLKKQAYDKNQHFW 877 (913)
Q Consensus 862 IkELRkQ~DeLNsEFy 877 (913)
|.+|....+.++-+|.
T Consensus 203 I~~LEsKVqDLm~Eir 218 (401)
T PF06785_consen 203 IGKLESKVQDLMYEIR 218 (401)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444444443
No 393
>PF06717 DUF1202: Protein of unknown function (DUF1202); InterPro: IPR009592 This family consists of several hypothetical bacterial proteins of around 335 residues in length. Members of this family are found exclusively in Escherichia coli and Salmonella species and are often referred to as YggM proteins. The function of this family is unknown.
Probab=70.79 E-value=1.9e+02 Score=32.81 Aligned_cols=46 Identities=9% Similarity=0.232 Sum_probs=31.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 662 DENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAA 707 (913)
Q Consensus 662 DPeLKaKIdeLekEIEeL~kqRdEInaELqeLReERdELeSeLKkL 707 (913)
+..+..+|..++..+...+..+..++..+.++...+..+..++...
T Consensus 133 ~~~F~~rf~~Ied~~~~kK~~I~~L~~qisaLdkqi~ai~Kkid~y 178 (308)
T PF06717_consen 133 DQDFNYRFNQIEDEYNRKKNKIPGLNKQISALDKQIVAINKKIDRY 178 (308)
T ss_pred chhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3677778877777777777777777777776666666666655443
No 394
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=70.77 E-value=1.1e+02 Score=34.81 Aligned_cols=98 Identities=18% Similarity=0.372 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhhcC--C--
Q 002520 685 AIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKNAISVDDIDGSIRNMEHRIAHET--L-- 760 (913)
Q Consensus 685 EInaELqeLReERdELeSeLKkLVeEIkrLReEInEKrKEIesLQSeLsKLrS~KSVEELQeEIkeLE~QIQheS--L-- 760 (913)
++...+.++.++-+.++++|++++++++++...+.+++...++++.-..+ ...+.+++-.+|..+-.+|...- |
T Consensus 256 eit~~LEkI~SREK~lNnqL~~l~q~fr~a~~~lse~~e~y~q~~~gv~~--rT~~L~eVm~e~E~~KqemEe~G~~msD 333 (384)
T KOG0972|consen 256 EITKALEKIASREKSLNNQLASLMQKFRRATDTLSELREKYKQASVGVSS--RTETLDEVMDEIEQLKQEMEEQGAKMSD 333 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHH--HHHHHHHHHHHHHHHHHHHHHhcccccC
Confidence 46667777888888999999999999998888887776655444322211 12455555555555544443322 2
Q ss_pred --CcHHHHHHHHHHHHHHHHHHHhhhccc
Q 002520 761 --PLKEEKQIIREIKQLKQRREQISSSIG 787 (913)
Q Consensus 761 --sLqEEKQlIrEISQLEkeRKdV~snIs 787 (913)
+|+.=|+. |+.|+...-+....++
T Consensus 334 GaplvkIkqa---vsKLk~et~~mnv~ig 359 (384)
T KOG0972|consen 334 GAPLVKIKQA---VSKLKEETQTMNVQIG 359 (384)
T ss_pred CchHHHHHHH---HHHHHHHHHhhhhhee
Confidence 56554443 3555555555444444
No 395
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=70.60 E-value=3e+02 Score=34.94 Aligned_cols=39 Identities=13% Similarity=0.202 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 807 KFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLL 845 (913)
Q Consensus 807 KELKKEIDELReKIkkLekELEeLkkKIeEAqaELdELq 845 (913)
..+-.++..+++++..+...-+.|...++.++.+++.+.
T Consensus 219 n~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~ 257 (916)
T KOG0249|consen 219 NRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLR 257 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 333344444444444444444444444444445555554
No 396
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=70.50 E-value=82 Score=33.29 Aligned_cols=35 Identities=23% Similarity=0.525 Sum_probs=17.7
Q ss_pred CCHHHHHHHHHHHHHHHhhcCCCcHHHHH-HHHHHHHHHHHHHH
Q 002520 739 ISVDDIDGSIRNMEHRIAHETLPLKEEKQ-IIREIKQLKQRREQ 781 (913)
Q Consensus 739 KSVEELQeEIkeLE~QIQheSLsLqEEKQ-lIrEISQLEkeRKd 781 (913)
-+|.-++.+|.+| |+|..... ++.+...|+..+.+
T Consensus 86 FnV~~l~~RL~kL--------L~lk~~~~~~~e~~k~le~~~~~ 121 (190)
T PF05266_consen 86 FNVKFLRSRLNKL--------LSLKDDQEKLLEERKKLEKKIEE 121 (190)
T ss_pred CccHHHHHHHHHH--------HHHHHhHHHHHHHHHHHHHHHHH
Confidence 5666666666552 23333333 44444555555443
No 397
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=70.46 E-value=81 Score=39.65 Aligned_cols=11 Identities=27% Similarity=0.474 Sum_probs=5.9
Q ss_pred ccccccCCCCC
Q 002520 596 RGIQLTGGEDG 606 (913)
Q Consensus 596 ~~~~~~~~~~~ 606 (913)
+.+-|||-..|
T Consensus 328 ~~~iITGpN~g 338 (782)
T PRK00409 328 TVLVITGPNTG 338 (782)
T ss_pred eEEEEECCCCC
Confidence 45566664443
No 398
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=70.39 E-value=1.4e+02 Score=30.97 Aligned_cols=34 Identities=9% Similarity=0.214 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 829 AVKKLHREESEKLKRLLGQFKAADEIRQEAYKHW 862 (913)
Q Consensus 829 eLkkKIeEAqaELdELqeElrAaeEeRQEAyekI 862 (913)
.+..++.++...+..++.++..+.......+..+
T Consensus 167 ~~~~ei~~~~~~~~~~~~~~~~is~~~k~E~~rf 200 (236)
T PF09325_consen 167 QAENEIEEAERRVEQAKDEFEEISENIKKELERF 200 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333444444444444444444433333
No 399
>PHA01750 hypothetical protein
Probab=70.19 E-value=24 Score=32.10 Aligned_cols=41 Identities=15% Similarity=0.277 Sum_probs=19.5
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 799 KDQIEEKMKFL-RKEADSLRENVIKAEAATQAVKKLHREESE 839 (913)
Q Consensus 799 KenIqEQIKEL-KKEIDELReKIkkLekELEeLkkKIeEAqa 839 (913)
|+.+++.++++ +++++.|+.+++.+......|+.++.++..
T Consensus 29 Kq~lkdAvkeIV~~ELdNL~~ei~~~kikqDnl~~qv~eik~ 70 (75)
T PHA01750 29 KQALKDAVKEIVNSELDNLKTEIEELKIKQDELSRQVEEIKR 70 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 34444445444 455555555555554444444433333333
No 400
>PLN03188 kinesin-12 family protein; Provisional
Probab=70.10 E-value=3.8e+02 Score=35.96 Aligned_cols=50 Identities=20% Similarity=0.191 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 829 AVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWK 878 (913)
Q Consensus 829 eLkkKIeEAqaELdELqeElrAaeEeRQEAyekIkELRkQ~DeLNsEFyq 878 (913)
+|--++.++...+.-.+.++..++++..++|.+|.+|++.++.-..-..+
T Consensus 1201 ellvrl~eaeea~~~a~~r~~~~eqe~~~~~k~~~klkrkh~~e~~t~~q 1250 (1320)
T PLN03188 1201 ELLVRLKEAEEALTVAQKRAMDAEQEAAEAYKQIDKLKRKHENEISTLNQ 1250 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445667777777778888888888888999999998887554444333
No 401
>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.01 E-value=1.4e+02 Score=32.37 Aligned_cols=86 Identities=7% Similarity=0.239 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHhhhcccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 768 IIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQ 847 (913)
Q Consensus 768 lIrEISQLEkeRKdV~snIs~kakIEqSLeEKenIqEQIKELKKEIDELReKIkkLekELEeLkkKIeEAqaELdELqeE 847 (913)
++++-+.++.++..+....-.-..+....+-.++.+..|..+|.-..+++...++.. | .+|+.++.++..+.+.
T Consensus 68 VLkQKK~yE~q~d~L~~QsfNMeQa~~t~e~LKdtq~Tv~AmK~~~k~mK~~ykkvn--I----d~IedlQDem~Dlmd~ 141 (218)
T KOG1655|consen 68 VLKQKKMYENQKDSLDQQSFNMEQANFTAESLKDTQATVAAMKDTNKEMKKQYKKVN--I----DKIEDLQDEMEDLMDQ 141 (218)
T ss_pred HHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC--H----HHHHHHHHHHHHHHHH
Confidence 455556666666554432221112222223333444455555655555555555443 1 1223334555555555
Q ss_pred HHHHHHHHHHHH
Q 002520 848 FKAADEIRQEAY 859 (913)
Q Consensus 848 lrAaeEeRQEAy 859 (913)
..++.+.+-..|
T Consensus 142 a~EiQE~Lgr~y 153 (218)
T KOG1655|consen 142 ADEIQEVLGRNY 153 (218)
T ss_pred HHHHHHHHhhcc
Confidence 555555555444
No 402
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=70.00 E-value=3e+02 Score=34.67 Aligned_cols=38 Identities=18% Similarity=0.419 Sum_probs=22.0
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 661 DDENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYK 698 (913)
Q Consensus 661 dDPeLKaKIdeLekEIEeL~kqRdEInaELqeLReERd 698 (913)
.+..+...++.--.++..+.+++.+...++..+|+.+.
T Consensus 238 ele~i~~~~~dqlqel~~l~~a~~q~~ee~~~~re~~~ 275 (716)
T KOG4593|consen 238 ELEAINKNMKDQLQELEELERALSQLREELATLRENRE 275 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34556666655555566666666666666665554443
No 403
>PF15294 Leu_zip: Leucine zipper
Probab=69.96 E-value=1.3e+02 Score=33.99 Aligned_cols=27 Identities=22% Similarity=0.286 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 800 DQIEEKMKFLRKEADSLRENVIKAEAA 826 (913)
Q Consensus 800 enIqEQIKELKKEIDELReKIkkLekE 826 (913)
+++++.+..++.++-.++..+..+.++
T Consensus 218 k~L~e~L~~~KhelL~~QeqL~~aeke 244 (278)
T PF15294_consen 218 KALEETLQSCKHELLRVQEQLSLAEKE 244 (278)
T ss_pred HHHHHHHHHHHHHHHhcchhhhcchhh
Confidence 445555555555555555554444433
No 404
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=69.54 E-value=94 Score=31.83 Aligned_cols=48 Identities=17% Similarity=0.290 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 801 QIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQF 848 (913)
Q Consensus 801 nIqEQIKELKKEIDELReKIkkLekELEeLkkKIeEAqaELdELqeEl 848 (913)
++.+-|+.+++.+++|.+.+.++...|.+|...+..+...+..+..+.
T Consensus 91 ~~~eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~q~~ 138 (145)
T COG1730 91 SADEAIEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQQKQ 138 (145)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566677777777777777777777777666666666555554433
No 405
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=69.47 E-value=57 Score=37.93 Aligned_cols=27 Identities=33% Similarity=0.770 Sum_probs=17.3
Q ss_pred CcHHHHH-HHHHHHHHHHHHHHhhhccc
Q 002520 761 PLKEEKQ-IIREIKQLKQRREQISSSIG 787 (913)
Q Consensus 761 sLqEEKQ-lIrEISQLEkeRKdV~snIs 787 (913)
.|..+++ ++.++.+|+.+|..+...++
T Consensus 34 ~ld~~~r~~~~~~~~l~~erN~~sk~i~ 61 (418)
T TIGR00414 34 ALDDERKKLLSEIEELQAKRNELSKQIG 61 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666655 77777777777766544443
No 406
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=69.25 E-value=1.6e+02 Score=31.21 Aligned_cols=20 Identities=10% Similarity=0.149 Sum_probs=10.5
Q ss_pred CCHHHHHHHHHHHHHHHhhc
Q 002520 739 ISVDDIDGSIRNMEHRIAHE 758 (913)
Q Consensus 739 KSVEELQeEIkeLE~QIQhe 758 (913)
.+...++..++.|.+--.++
T Consensus 66 d~~~~f~~~~~tl~~LE~~G 85 (190)
T PF05266_consen 66 DSRSSFESLMKTLSELEEHG 85 (190)
T ss_pred CcHHHHHHHHHHHHHHHHcC
Confidence 45555665555555543333
No 407
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=69.21 E-value=72 Score=28.39 Aligned_cols=47 Identities=17% Similarity=0.445 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 684 DAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQS 730 (913)
Q Consensus 684 dEInaELqeLReERdELeSeLKkLVeEIkrLReEInEKrKEIesLQS 730 (913)
..+..++.+.++.--.+.++|+..-..++.+..+|..++++|+.+++
T Consensus 14 Q~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~ 60 (61)
T PF08826_consen 14 QAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELRS 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34555555566666666666777766777777777777777766553
No 408
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=69.13 E-value=1.5e+02 Score=33.26 Aligned_cols=59 Identities=8% Similarity=0.161 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhhcCCCcHHHHH-HHHHHHHHHHHHHHhhhc
Q 002520 723 QEIDSVQSRINMMKNAISVDDIDGSIRNMEHRIAHETLPLKEEKQ-IIREIKQLKQRREQISSS 785 (913)
Q Consensus 723 KEIesLQSeLsKLrS~KSVEELQeEIkeLE~QIQheSLsLqEEKQ-lIrEISQLEkeRKdV~sn 785 (913)
..++-++.++...+ ..+++.+.++.. ++-++.-+.+..+-. ....|+.|+.++-+++..
T Consensus 170 ~a~~fl~~ql~~~~--~~l~~ae~~l~~--fr~~~~~~d~~~~~~~~~~~i~~L~~~l~~~~~~ 229 (362)
T TIGR01010 170 DTIAFAENEVKEAE--QRLNATKAELLK--YQIKNKVFDPKAQSSAQLSLISTLEGELIRVQAQ 229 (362)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHH--HHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555444 344444444433 444555567766555 777788887777654433
No 409
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=69.11 E-value=3.5e+02 Score=35.07 Aligned_cols=47 Identities=9% Similarity=0.275 Sum_probs=29.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 663 ENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAIS 709 (913)
Q Consensus 663 PeLKaKIdeLekEIEeL~kqRdEInaELqeLReERdELeSeLKkLVe 709 (913)
|.+.-.|=.+-+.+.++.+...+++..+.-++.++..+...+..+..
T Consensus 609 ~~~~~d~ls~mkd~~~~~q~~~EL~~q~~~L~ee~~af~~~v~~l~~ 655 (984)
T COG4717 609 PEQQLDILSTMKDLKKLMQKKAELTHQVARLREEQAAFEERVEGLLA 655 (984)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34444444555566666666777777777777777777766655543
No 410
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=69.01 E-value=29 Score=33.06 Aligned_cols=27 Identities=15% Similarity=0.217 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 817 RENVIKAEAATQAVKKLHREESEKLKR 843 (913)
Q Consensus 817 ReKIkkLekELEeLkkKIeEAqaELdE 843 (913)
...++.+.+.++.+.+++.+++..|.+
T Consensus 80 e~~i~~lek~~~~l~~~l~e~q~~l~~ 106 (110)
T TIGR02338 80 ELRVKTLQRQEERLREQLKELQEKIQE 106 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344444444444444443
No 411
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=68.89 E-value=43 Score=39.56 Aligned_cols=28 Identities=21% Similarity=0.144 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 810 RKEADSLRENVIKAEAATQAVKKLHREE 837 (913)
Q Consensus 810 KKEIDELReKIkkLekELEeLkkKIeEA 837 (913)
..++.+++.++.++..+++++..++.++
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l 164 (525)
T TIGR02231 137 GSEIERLLTEDREAERRIRELEKQLSEL 164 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444333333344443333333
No 412
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=68.75 E-value=10 Score=42.99 Aligned_cols=48 Identities=13% Similarity=0.116 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 805 KMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAAD 852 (913)
Q Consensus 805 QIKELKKEIDELReKIkkLekELEeLkkKIeEAqaELdELqeElrAae 852 (913)
.+......+..|+..+..+...+-.|+..+......+..|+.+.++++
T Consensus 106 ~ls~h~ssIS~Lqs~v~~lsTdvsNLksdVSt~aL~ItdLe~RV~~LE 153 (326)
T PF04582_consen 106 TLSDHSSSISDLQSSVSALSTDVSNLKSDVSTQALNITDLESRVKALE 153 (326)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhcchHhhHHHHHHHHh
Confidence 333344444445555555555555555555555555555555555544
No 413
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=68.34 E-value=1.9e+02 Score=35.91 Aligned_cols=40 Identities=13% Similarity=0.345 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHhhcCCCcHHHHH-HHHHHHHHHHHHHHh
Q 002520 741 VDDIDGSIRNMEHRIAHETLPLKEEKQ-IIREIKQLKQRREQI 782 (913)
Q Consensus 741 VEELQeEIkeLE~QIQheSLsLqEEKQ-lIrEISQLEkeRKdV 782 (913)
++..+.++.. ++.++..+.+..|-+ .+.++..|+.++.++
T Consensus 283 L~~aE~~l~~--fr~~~~~~d~~~ea~~~l~~~~~l~~ql~~l 323 (726)
T PRK09841 283 LDQAEEKLNV--YRQQRDSVDLNLEAKAVLEQIVNVDNQLNEL 323 (726)
T ss_pred HHHHHHHHHH--HHHHcCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3344444433 455555567776666 777787777776553
No 414
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=68.33 E-value=64 Score=38.13 Aligned_cols=13 Identities=15% Similarity=0.432 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHH
Q 002520 768 IIREIKQLKQRRE 780 (913)
Q Consensus 768 lIrEISQLEkeRK 780 (913)
+.++|.+|+..+.
T Consensus 76 l~~~l~~l~~~~~ 88 (525)
T TIGR02231 76 LRKQIRELEAELR 88 (525)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444433
No 415
>PF03114 BAR: BAR domain; InterPro: IPR004148 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. ; GO: 0005515 protein binding, 0005737 cytoplasm; PDB: 4AVM_A 2D4C_C 1X03_A 1X04_A 2RND_A 2RMY_A 2FIC_A 2C08_A 2Z0V_A 3SOG_A ....
Probab=68.30 E-value=1.3e+02 Score=29.94 Aligned_cols=36 Identities=11% Similarity=0.280 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 687 RDDIQTIRASYKEYAEKLEAAISDERSARESLKSKR 722 (913)
Q Consensus 687 naELqeLReERdELeSeLKkLVeEIkrLReEInEKr 722 (913)
+.....+..+...+...++.+...++.+...+....
T Consensus 25 D~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 60 (229)
T PF03114_consen 25 DEEFEELEEKFKQLEESIKKLQKSLKKYLDSIKKLS 60 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 455555555555555555555555555444444333
No 416
>PF11172 DUF2959: Protein of unknown function (DUF2959); InterPro: IPR021342 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=68.25 E-value=70 Score=34.42 Aligned_cols=59 Identities=15% Similarity=0.297 Sum_probs=34.7
Q ss_pred CCchhhhhhhccccccccCcceeeccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 631 GSTVDASESRNIGVEVVKQPFYFLVKVPRYDDENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRAS 696 (913)
Q Consensus 631 esLKDaVEe~kE~Ld~LRr~fYf~Vr~rRLdDPeLKaKIdeLekEIEeL~kqRdEInaELqeLReE 696 (913)
+.+.++.+.+..-|+.+ -.+-.++.-+|+...+.+..+.+.....-+++...+.++..-
T Consensus 35 dsq~eaqeQF~sALe~f-------~sl~~~~ggdLe~~Y~~ln~~ye~s~~~A~~V~~RI~~vE~V 93 (201)
T PF11172_consen 35 DSQQEAQEQFKSALEQF-------KSLVNFDGGDLEDKYNALNDEYESSEDAAEEVSDRIDAVEDV 93 (201)
T ss_pred HHHHHHHHHHHHHHHHH-------HHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666652 333444556677777777777766666666555555554433
No 417
>PLN02320 seryl-tRNA synthetase
Probab=68.18 E-value=55 Score=39.37 Aligned_cols=25 Identities=20% Similarity=0.446 Sum_probs=13.2
Q ss_pred CcHHHHH-HHHHHHHHHHHHHHhhhc
Q 002520 761 PLKEEKQ-IIREIKQLKQRREQISSS 785 (913)
Q Consensus 761 sLqEEKQ-lIrEISQLEkeRKdV~sn 785 (913)
.|.++++ ++.++.+|+..|..+...
T Consensus 97 ~ld~~~r~~~~~~~~lr~ern~~sk~ 122 (502)
T PLN02320 97 ELYENMLALQKEVERLRAERNAVANK 122 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555544 566666666555544333
No 418
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=68.11 E-value=1.2e+02 Score=29.42 Aligned_cols=94 Identities=18% Similarity=0.234 Sum_probs=47.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 002520 663 ENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASY----KEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKNA 738 (913)
Q Consensus 663 PeLKaKIdeLekEIEeL~kqRdEInaELqeLReER----dELeSeLKkLVeEIkrLReEInEKrKEIesLQSeLsKLrS~ 738 (913)
+.+..+++.+..++......++.+......+.... ..+...+..+...-..+...+.++...++.....+..+
T Consensus 36 ~~~l~~~~~~~~e~~~~~~~~~~l~~~~~~L~~~~~~~~~~i~~~~~~l~~~w~~l~~~~~~r~~~L~~~~~~~~~~--- 112 (213)
T cd00176 36 EALLKKHEALEAELAAHEERVEALNELGEQLIEEGHPDAEEIQERLEELNQRWEELRELAEERRQRLEEALDLQQFF--- 112 (213)
T ss_pred HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 34445556666666666666666666666655532 34444444444444555555555555554433333222
Q ss_pred CCHHHHHHHHHHHHHHHhhcC
Q 002520 739 ISVDDIDGSIRNMEHRIAHET 759 (913)
Q Consensus 739 KSVEELQeEIkeLE~QIQheS 759 (913)
...-++..-+...+..+....
T Consensus 113 ~~~~~l~~wl~~~e~~l~~~~ 133 (213)
T cd00176 113 RDADDLEQWLEEKEAALASED 133 (213)
T ss_pred HHHHHHHHHHHHHHHHhcCcc
Confidence 222225555666555555433
No 419
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=67.66 E-value=1.3e+02 Score=37.99 Aligned_cols=8 Identities=38% Similarity=0.596 Sum_probs=3.8
Q ss_pred ccccccCC
Q 002520 596 RGIQLTGG 603 (913)
Q Consensus 596 ~~~~~~~~ 603 (913)
+.+-|||-
T Consensus 323 ~~liItGp 330 (771)
T TIGR01069 323 RVLAITGP 330 (771)
T ss_pred eEEEEECC
Confidence 34455553
No 420
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=67.50 E-value=1.6e+02 Score=37.16 Aligned_cols=14 Identities=14% Similarity=0.207 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHH
Q 002520 768 IIREIKQLKQRREQ 781 (913)
Q Consensus 768 lIrEISQLEkeRKd 781 (913)
+-+-|..|+.++++
T Consensus 518 ~~~li~~l~~~~~~ 531 (782)
T PRK00409 518 LNELIASLEELERE 531 (782)
T ss_pred HHHHHHHHHHHHHH
Confidence 44455555555443
No 421
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=67.30 E-value=1.3e+02 Score=30.14 Aligned_cols=15 Identities=27% Similarity=0.465 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHh
Q 002520 768 IIREIKQLKQRREQI 782 (913)
Q Consensus 768 lIrEISQLEkeRKdV 782 (913)
+..+.++|+.+...+
T Consensus 25 v~~~l~~LEae~q~L 39 (126)
T PF09403_consen 25 VESELNQLEAEYQQL 39 (126)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 455555555555543
No 422
>KOG2150 consensus CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=67.01 E-value=1.9e+02 Score=35.44 Aligned_cols=56 Identities=21% Similarity=0.342 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 664 NLREQIKAAQSKVDEKTRSRDAIRDDIQTI--RASYKEYAEKLEAAISDERSARESLK 719 (913)
Q Consensus 664 eLKaKIdeLekEIEeL~kqRdEInaELqeL--ReERdELeSeLKkLVeEIkrLReEIn 719 (913)
+|..+|+..-+++.+-....+.+=.++... -+.|+.+++-|++-+-++.|||+.|+
T Consensus 5 KLq~eIdr~lkKv~Egve~Fd~i~ek~~~~~n~sqkeK~e~DLKkEIKKLQRlRdQIK 62 (575)
T KOG2150|consen 5 KLQQEIDRCLKKVDEGVEIFDEIYEKLHSANNVSQKEKLESDLKKEIKKLQRLRDQIK 62 (575)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666666666555555555444444332 24555566656655555555555554
No 423
>PF01496 V_ATPase_I: V-type ATPase 116kDa subunit family ; InterPro: IPR002490 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents the 116kDa subunit (or subunit a) and subunit I found in the V0 or A0 complex of V- or A-ATPases, respectively. The 116kDa subunit is a transmembrane glycoprotein required for the assembly and proton transport activity of the ATPase complex. Several isoforms of the 116kDa subunit exist, providing a potential role in the differential targeting and regulation of the V-ATPase for specific organelles []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 2RPW_X 2NVJ_A 2JTW_A 3RRK_A.
Probab=66.70 E-value=18 Score=44.58 Aligned_cols=7 Identities=43% Similarity=0.591 Sum_probs=2.6
Q ss_pred CHHHHHH
Q 002520 894 DREALQH 900 (913)
Q Consensus 894 dv~eLqe 900 (913)
+++.++.
T Consensus 301 ~~~~l~~ 307 (759)
T PF01496_consen 301 DVEELKK 307 (759)
T ss_dssp THHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 424
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=66.69 E-value=3.7e+02 Score=34.47 Aligned_cols=221 Identities=10% Similarity=0.184 Sum_probs=0.0
Q ss_pred eccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 654 LVKVPRYDDENLREQIKAAQSKVDEKTRSRDAIR------DDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDS 727 (913)
Q Consensus 654 ~Vr~rRLdDPeLKaKIdeLekEIEeL~kqRdEIn------aELqeLReERdELeSeLKkLVeEIkrLReEInEKrKEIes 727 (913)
+-.+.-+.|+.|...+.++..+++.+.+.--=|. .++..+.+-++.==.+...+.+...+.....+..+.++=.
T Consensus 880 iPql~ll~dE~L~dRveE~~E~L~~a~e~~~fI~qhG~tls~LEpia~~LqsDPe~~e~L~~~y~qA~~~q~q~~qq~FA 959 (1480)
T COG3096 880 IPQLNLLADESLADRVEEIRERLDEAQEAARFIQQHGNTLSKLEPIASVLQSDPEQFEQLKEDYAQAQQMQRQARQQAFA 959 (1480)
T ss_pred hhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHhhhhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHhccCCCCHHHHH--HHHHHHHHHHhhcCCCcHHHHH-HHHHHHHHHHHHHHhhhcccchhHHHHHHHhHHHHHH
Q 002520 728 VQSRINMMKNAISVDDID--GSIRNMEHRIAHETLPLKEEKQ-IIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEE 804 (913)
Q Consensus 728 LQSeLsKLrS~KSVEELQ--eEIkeLE~QIQheSLsLqEEKQ-lIrEISQLEkeRKdV~snIs~kakIEqSLeEKenIqE 804 (913)
|.+-+..-..|.-.+-.+ .+-..|+.+++..--....||. ...++.+-..+..+.+..+. .++.
T Consensus 960 L~dv~qRr~HF~Y~ds~~~l~e~sdLnekLr~rL~q~eaeR~~~reqlrQ~Q~Q~sqYnqvl~-------------~Lks 1026 (1480)
T COG3096 960 LTEVVQRRAHFSYSDSAEMLSENSDLNEKLRQRLEQAEAERTRAREQLRQHQAQLSQYNQVLA-------------SLKS 1026 (1480)
T ss_pred HHHHHHhhcccccchhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHh
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 805 KMKFLRKEADSLRENVIKAEA-----ATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKY 879 (913)
Q Consensus 805 QIKELKKEIDELReKIkkLek-----ELEeLkkKIeEAqaELdELqeElrAaeEeRQEAyekIkELRkQ~DeLNsEFyq~ 879 (913)
....+..-++++..++..+-- -.+..+...+++.+.|..-+.++...++.+.-.-..+..|.+.++.+...|...
T Consensus 1027 S~~~K~~~l~El~qEl~d~GV~AD~gAeeRA~~RRDELh~~Lst~RsRr~~~EkqlT~~E~E~~~L~~~~rK~ErDY~~~ 1106 (1480)
T COG3096 1027 SYDTKKELLNELQQELQDIGVRADSGAEERARIRRDELHAQLSTNRSRRNQLEKQLTFCEAEMDNLTRKLRKLERDYFEM 1106 (1480)
T ss_pred hhhHHHHHHHHHHHHHHHhCCCcCcchHHHHHHHHHHHHHHHhccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q ss_pred HHHHHHHH
Q 002520 880 KDDTKQAN 887 (913)
Q Consensus 880 Rr~l~kAR 887 (913)
|...-.|+
T Consensus 1107 Re~VV~AK 1114 (1480)
T COG3096 1107 REQVVTAK 1114 (1480)
T ss_pred HHHHHHhh
No 425
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=66.51 E-value=1.1e+02 Score=28.14 Aligned_cols=110 Identities=16% Similarity=0.261 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH--------HHHHHHh
Q 002520 664 NLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSA-RESLKSKRQEIDS--------VQSRINM 734 (913)
Q Consensus 664 eLKaKIdeLekEIEeL~kqRdEInaELqeLReERdELeSeLKkLVeEIkrL-ReEInEKrKEIes--------LQSeLsK 734 (913)
.|...+..+...+..+...+..+...+..+......+..+++.....+..+ ...-..+..+|+. |...+..
T Consensus 4 ~L~~~l~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~I~~~f~~l~~~L~~~e~~ll~~l~~~~~~~~~~l~~q~~~ 83 (127)
T smart00502 4 ALEELLTKLRKKAAELEDALKQLISIIQEVEENAADVEAQIKAAFDELRNALNKRKKQLLEDLEEQKENKLKVLEQQLES 83 (127)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555555555555544444444443333221111 1111111222221 2222222
Q ss_pred ccCCCCHHHHHHHHHHHHHHHhhcC-C-CcHHHHHHHHHHHHH
Q 002520 735 MKNAISVDDIDGSIRNMEHRIAHET-L-PLKEEKQIIREIKQL 775 (913)
Q Consensus 735 LrS~KSVEELQeEIkeLE~QIQheS-L-sLqEEKQlIrEISQL 775 (913)
+. .....+...|..++..+.++. + -|..-+.+...+..|
T Consensus 84 l~--~~l~~l~~~~~~~e~~l~~~~~~e~L~~~~~i~~rl~~l 124 (127)
T smart00502 84 LT--QKQEKLSHAINFTEEALNSGDPTELLLSKKLIIERLQNL 124 (127)
T ss_pred HH--HHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Confidence 22 456666667777777766655 3 344334455444433
No 426
>KOG2150 consensus CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=66.26 E-value=2.9e+02 Score=34.03 Aligned_cols=69 Identities=16% Similarity=0.215 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHH
Q 002520 671 AAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKNAISVDDIDGS 747 (913)
Q Consensus 671 eLekEIEeL~kqRdEInaELqeLReERdELeSeLKkLVeEIkrLReEInEKrKEIesLQSeLsKLrS~KSVEELQeE 747 (913)
+|+.+|+...+++.+-.......-++.....+ +++...|...++.-++.+++||+++. +-.+-.||...
T Consensus 5 KLq~eIdr~lkKv~Egve~Fd~i~ek~~~~~n-----~sqkeK~e~DLKkEIKKLQRlRdQIK---tW~ss~dIKDK 73 (575)
T KOG2150|consen 5 KLQQEIDRCLKKVDEGVEIFDEIYEKLHSANN-----VSQKEKLESDLKKEIKKLQRLRDQIK---TWQSSSDIKDK 73 (575)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCC-----hhHHHHHHHHHHHHHHHHHHHHHHHH---hhhcccccccH
Confidence 45666666666655555555554444444432 34555566666655566666666554 33455555555
No 427
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=66.09 E-value=31 Score=32.40 Aligned_cols=49 Identities=8% Similarity=0.192 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 673 QSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSK 721 (913)
Q Consensus 673 ekEIEeL~kqRdEInaELqeLReERdELeSeLKkLVeEIkrLReEInEK 721 (913)
..++..++..+++|+..+..+..+.+.|.++|+.+.+..++.|.++...
T Consensus 25 ~~E~~~ins~LD~Lns~LD~LE~rnD~l~~~L~~LLesnrq~R~e~~~~ 73 (83)
T PF03670_consen 25 EEEYAAINSMLDQLNSCLDHLEQRNDHLHAQLQELLESNRQIRLEFQEQ 73 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466777888888888899999999999999999988877777766543
No 428
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=65.94 E-value=1.1e+02 Score=29.93 Aligned_cols=69 Identities=9% Similarity=0.105 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 665 LREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRIN 733 (913)
Q Consensus 665 LKaKIdeLekEIEeL~kqRdEInaELqeLReERdELeSeLKkLVeEIkrLReEInEKrKEIesLQSeLs 733 (913)
|-.+..+|+++...|++..-+-.+....++..+......|+++.+++..+.=.-..+.+.|..|+.++.
T Consensus 3 la~eYsKLraQ~~vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~ 71 (102)
T PF10205_consen 3 LAQEYSKLRAQNQVLKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELE 71 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556778888888888888887777777788888877777777777776666666666677777777664
No 429
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=65.81 E-value=71 Score=38.19 Aligned_cols=19 Identities=16% Similarity=0.156 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 002520 850 AADEIRQEAYKHWQSLKKQ 868 (913)
Q Consensus 850 AaeEeRQEAyekIkELRkQ 868 (913)
++..++++....+..|..+
T Consensus 120 ql~~~~~~~~~~l~~l~~~ 138 (472)
T TIGR03752 120 QLKSERQQLQGLIDQLQRR 138 (472)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 430
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=65.59 E-value=57 Score=33.08 Aligned_cols=13 Identities=46% Similarity=0.754 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHh
Q 002520 770 REIKQLKQRREQI 782 (913)
Q Consensus 770 rEISQLEkeRKdV 782 (913)
.||-+|+..|+.+
T Consensus 47 eEVvrlKQrRRTL 59 (135)
T KOG4196|consen 47 EEVVRLKQRRRTL 59 (135)
T ss_pred HHHHHHHHHHHHH
Confidence 3555666666553
No 431
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=65.44 E-value=2.2e+02 Score=31.32 Aligned_cols=30 Identities=10% Similarity=0.113 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 834 HREESEKLKRLLGQFKAADEIRQEAYKHWQ 863 (913)
Q Consensus 834 IeEAqaELdELqeElrAaeEeRQEAyekIk 863 (913)
+..++..++..+.++..+..+++.....+.
T Consensus 184 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~ 213 (301)
T PF14362_consen 184 YKEKRAQLDAAQAELDTLQAQIDAAIAALD 213 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 344444444444444444444444333333
No 432
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=65.18 E-value=2.4e+02 Score=31.72 Aligned_cols=38 Identities=11% Similarity=-0.060 Sum_probs=19.9
Q ss_pred hhhhhhhcccccccc--CcceeeccCCCCCchHHHHHHHHH
Q 002520 634 VDASESRNIGVEVVK--QPFYFLVKVPRYDDENLREQIKAA 672 (913)
Q Consensus 634 KDaVEe~kE~Ld~LR--r~fYf~Vr~rRLdDPeLKaKIdeL 672 (913)
.+.++.|...+.+-. .+.++-+++.. .||++-.+|...
T Consensus 112 e~~~~~~~~~v~v~~~~~s~ii~I~~~~-~dP~~A~~ian~ 151 (362)
T TIGR01010 112 EAFYRYYKKRLSVDVDSVSGILTLNVTA-FDAEEAQKINQR 151 (362)
T ss_pred HHHHHHHHhceEEeecCCCCeEEEEEEe-cCHHHHHHHHHH
Confidence 345555666555432 34443355444 567776666443
No 433
>PLN02678 seryl-tRNA synthetase
Probab=65.12 E-value=68 Score=38.00 Aligned_cols=10 Identities=20% Similarity=0.298 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 002520 770 REIKQLKQRR 779 (913)
Q Consensus 770 rEISQLEkeR 779 (913)
.+|-+|..++
T Consensus 33 d~il~ld~~~ 42 (448)
T PLN02678 33 DEVIALDKEW 42 (448)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 434
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=65.03 E-value=27 Score=35.96 Aligned_cols=70 Identities=21% Similarity=0.338 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhhcccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 768 IIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLK 842 (913)
Q Consensus 768 lIrEISQLEkeRKdV~snIs~kakIEqSLeEKenIqEQIKELKKEIDELReKIkkLekELEeLkkKIeEAqaELd 842 (913)
+++++-.++...+..........+..+.. ..+..+.+++++.++++++++.+.+++.|+++.+...++++
T Consensus 123 li~~l~~~~~~~~~~~kq~~~~~~~~~~~-----~~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~eyd 192 (192)
T PF05529_consen 123 LIKELIKLEEKLEALKKQAESASEAAEKL-----LKEENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQKEYD 192 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhh-----hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
No 435
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=64.93 E-value=1.6e+02 Score=30.94 Aligned_cols=30 Identities=17% Similarity=0.223 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002520 862 WQSLKKQAYDKNQHFWKYKDDTKQANDLAS 891 (913)
Q Consensus 862 IkELRkQ~DeLNsEFyq~Rr~l~kARdLAa 891 (913)
+..|.++...+..+|...-..+..||.|+.
T Consensus 127 ~~~L~~~~~~~~eDY~~L~~Im~RARkl~~ 156 (161)
T TIGR02894 127 LEKLRQRLSTIEEDYQTLIDIMDRARKLAV 156 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444555555666666666666666664
No 436
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=64.92 E-value=3.4e+02 Score=33.49 Aligned_cols=50 Identities=16% Similarity=0.092 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 681 RSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQS 730 (913)
Q Consensus 681 kqRdEInaELqeLReERdELeSeLKkLVeEIkrLReEInEKrKEIesLQS 730 (913)
..+-+....+..+....+.+..++..+-..+..|..++.....+|+.+.+
T Consensus 23 ~~l~~s~~~v~~l~~~ld~a~~e~d~le~~l~~y~~~L~~~~~di~~IE~ 72 (701)
T PF09763_consen 23 HSLLESEKQVNSLMEYLDEALAECDELESWLSLYDVELNSVRDDIEYIES 72 (701)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444445555555566666666666655666666666665555554443
No 437
>KOG0517 consensus Beta-spectrin [Cytoskeleton]
Probab=64.56 E-value=5.8e+02 Score=35.95 Aligned_cols=115 Identities=12% Similarity=0.169 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH-HhccCCCCHHHHHH
Q 002520 669 IKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEI-DSVQSRI-NMMKNAISVDDIDG 746 (913)
Q Consensus 669 IdeLekEIEeL~kqRdEInaELqeLReERdELeSeLKkLVeEIkrLReEInEKrKEI-esLQSeL-sKLrS~KSVEELQe 746 (913)
-....+++-.-+..++.+.++-..+-.++=++...+.+.+.++.+.-.++...-.+- ..|.+.- ..+- .+|.+++++
T Consensus 1311 HqAFeaELaank~~l~~i~~eG~~L~~ekpe~~~~V~~kl~~L~~~W~~Le~~t~~Kg~~L~qA~~q~~~-~qs~~D~~~ 1389 (2473)
T KOG0517|consen 1311 HQAFEAELAANKEWLEKIEKEGQELVSEKPELKALVEKKLRELHKQWDELEKTTQEKGRKLFQANRQELL-LQSLADAKK 1389 (2473)
T ss_pred HHHHHHHHHhChHHHHHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-HHHHHHHHH
Confidence 344445555555556666666665555553333323333333333222222222111 0111110 1111 367778888
Q ss_pred HHHHHHHHHhhcCC--CcHHHHHHHHHHHHHHHHHHHhhh
Q 002520 747 SIRNMEHRIAHETL--PLKEEKQIIREIKQLKQRREQISS 784 (913)
Q Consensus 747 EIkeLE~QIQheSL--sLqEEKQlIrEISQLEkeRKdV~s 784 (913)
.+..|+.+++..-- .|+-=+.+++..+.|+.+......
T Consensus 1390 ~l~~le~qL~S~D~G~DL~Svn~llkKqq~lEsem~~~~~ 1429 (2473)
T KOG0517|consen 1390 KLDELESQLQSDDTGKDLTSVNDLLKKQQVLESEMEVRAQ 1429 (2473)
T ss_pred HHHHHHHHhcCCCCCcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888777762 666666666666666666544333
No 438
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=64.43 E-value=1.5e+02 Score=29.21 Aligned_cols=46 Identities=17% Similarity=0.167 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 805 KMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKA 850 (913)
Q Consensus 805 QIKELKKEIDELReKIkkLekELEeLkkKIeEAqaELdELqeElrA 850 (913)
.+.++.++.++|+.....|..+.......+.++++++.++...++.
T Consensus 31 S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~ 76 (107)
T PF09304_consen 31 SQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLED 76 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555555555555555555555555555555554444433
No 439
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=64.17 E-value=2.7e+02 Score=32.00 Aligned_cols=44 Identities=7% Similarity=0.164 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHhccC-------CCCHHHHHHHHHHHHHHHhhcC
Q 002520 716 ESLKSKRQEIDSVQSRINMMKN-------AISVDDIDGSIRNMEHRIAHET 759 (913)
Q Consensus 716 eEInEKrKEIesLQSeLsKLrS-------~KSVEELQeEIkeLE~QIQheS 759 (913)
..+.++.+.|..|...++.... ..+.-.|-..+..|..++..+.
T Consensus 209 a~~a~LE~RL~~LE~~lG~~~~~~~~l~~~~~~~~l~~~l~~L~~~lslL~ 259 (388)
T PF04912_consen 209 ARAADLEKRLARLESALGIDSDKMSSLDSDTSSSPLLPALNELERQLSLLD 259 (388)
T ss_pred HHHHHHHHHHHHHHHHhCCCccccccccccCCcchHHHHHHHHHHHHHhcC
Confidence 3455666666666666654110 1233455566666666666554
No 440
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=64.05 E-value=2e+02 Score=30.57 Aligned_cols=26 Identities=15% Similarity=0.275 Sum_probs=12.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 663 ENLREQIKAAQSKVDEKTRSRDAIRD 688 (913)
Q Consensus 663 PeLKaKIdeLekEIEeL~kqRdEIna 688 (913)
...+..|..|+.++..+.++.+.+..
T Consensus 15 ~~~k~~i~~Le~~Lk~l~~~~e~lv~ 40 (224)
T cd07623 15 EEKQQQIENLDQQLRKLHASVESLVN 40 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555444444333
No 441
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=64.03 E-value=4.3e+02 Score=34.31 Aligned_cols=14 Identities=36% Similarity=0.145 Sum_probs=10.0
Q ss_pred cccccccccccccc
Q 002520 339 VNEVGNGPVRDDLV 352 (913)
Q Consensus 339 v~~v~~~~~~d~~~ 352 (913)
+.++.+.||+|=+.
T Consensus 122 ~vely~e~v~dl~~ 135 (913)
T KOG0244|consen 122 FVELYNEEVLDLLK 135 (913)
T ss_pred eeeccchhhhhhcC
Confidence 44888888888544
No 442
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=63.97 E-value=3.1e+02 Score=32.68 Aligned_cols=35 Identities=20% Similarity=0.439 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 665 LREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKE 699 (913)
Q Consensus 665 LKaKIdeLekEIEeL~kqRdEInaELqeLReERdE 699 (913)
+...|..+...++.++..++.....++.++.....
T Consensus 83 ~d~~i~~l~~~i~~~k~~~~~q~~~~~~~~~~~~~ 117 (426)
T smart00806 83 IDDEIDTLQNELDEVKQALESQREAIQRLKERQQN 117 (426)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhh
Confidence 44555555555555555555555555544444333
No 443
>cd07686 F-BAR_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fer (Fes related) tyrosine kinase. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fer (Fes related) is a cytoplasmic (or nonreceptor) tyrosine kinase expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-cell interactions mediated by adherens junctions and focal adhesions. Fer kinase also regulates cell cycle progression in malignant cells. It contains an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membran
Probab=63.85 E-value=2.3e+02 Score=31.07 Aligned_cols=17 Identities=18% Similarity=0.276 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHhhhhcC
Q 002520 897 ALQHLCVNQVRSRTLLL 913 (913)
Q Consensus 897 eLqelc~~QVEkfm~lw 913 (913)
.||.++..=|-....+|
T Consensus 206 ~lQ~l~E~rv~~ln~i~ 222 (234)
T cd07686 206 SLQKMQEEMIKALKGIL 222 (234)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44555555554444444
No 444
>KOG4451 consensus Uncharacterized conserved protein (tumor-associated antigen HCA127 in humans) [Function unknown]
Probab=63.79 E-value=2.2e+02 Score=31.55 Aligned_cols=46 Identities=11% Similarity=0.081 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 827 TQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDK 872 (913)
Q Consensus 827 LEeLkkKIeEAqaELdELqeElrAaeEeRQEAyekIkELRkQ~DeL 872 (913)
|..+.+.+++.++.++..++-......--...|+....++.+.+.+
T Consensus 73 lr~iHadiN~men~ikq~k~~~~~~~~~~~r~~eey~~lk~h~d~l 118 (286)
T KOG4451|consen 73 LREIHADINEMENDIKQVKALEQHITSCNGRKGEEYMELKSHADEL 118 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH
Confidence 3344444444444444333333333333333333333444433333
No 445
>PF15233 SYCE1: Synaptonemal complex central element protein 1
Probab=63.69 E-value=1.8e+02 Score=29.72 Aligned_cols=11 Identities=9% Similarity=-0.000 Sum_probs=4.4
Q ss_pred HHHHHHHHHHh
Q 002520 879 YKDDTKQANDL 889 (913)
Q Consensus 879 ~Rr~l~kARdL 889 (913)
-++..+.-+.|
T Consensus 114 ~erLa~EI~~l 124 (134)
T PF15233_consen 114 PERLAREICAL 124 (134)
T ss_pred HHHHHHHHHHH
Confidence 44444433333
No 446
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=63.18 E-value=66 Score=28.34 Aligned_cols=11 Identities=27% Similarity=0.510 Sum_probs=3.9
Q ss_pred HHHHHHHHHHH
Q 002520 809 LRKEADSLREN 819 (913)
Q Consensus 809 LKKEIDELReK 819 (913)
|..++++|...
T Consensus 15 L~~kvdqLs~d 25 (56)
T PF04728_consen 15 LNSKVDQLSSD 25 (56)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 447
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=63.12 E-value=2.3e+02 Score=30.77 Aligned_cols=40 Identities=25% Similarity=0.319 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 804 EKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKR 843 (913)
Q Consensus 804 EQIKELKKEIDELReKIkkLekELEeLkkKIeEAqaELdE 843 (913)
+.+..+...+..|...-..+....+....++..+..+|.+
T Consensus 116 Ee~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLkE 155 (205)
T KOG1003|consen 116 EDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTDKLKE 155 (205)
T ss_pred HHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh
Confidence 3444444444444444444444444444333333343333
No 448
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=63.04 E-value=3.5e+02 Score=32.90 Aligned_cols=86 Identities=13% Similarity=0.284 Sum_probs=40.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-----
Q 002520 663 ENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKN----- 737 (913)
Q Consensus 663 PeLKaKIdeLekEIEeL~kqRdEInaELqeLReERdELeSeLKkLVeEIkrLReEInEKrKEIesLQSeLsKLrS----- 737 (913)
++|..+++--..++...+..++.+-..+..+... + -..+.+|.+++....++...|=+|--++.-++.
T Consensus 337 ~dL~~R~K~Q~q~~~~~r~ri~~i~e~v~eLqk~--~-----ad~~~KI~~~k~r~~~Ls~RiLRv~ikqeilr~~G~~L 409 (508)
T KOG3091|consen 337 EDLRQRLKVQDQEVKQHRIRINAIGERVTELQKH--H-----ADAVAKIEEAKNRHVELSHRILRVMIKQEILRKRGYAL 409 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--h-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcC
Confidence 5566666544444444444444444444433311 1 112345555555555555554333333322221
Q ss_pred CCCHHHHHHHHHHHHHHH
Q 002520 738 AISVDDIDGSIRNMEHRI 755 (913)
Q Consensus 738 ~KSVEELQeEIkeLE~QI 755 (913)
....|+|..+.+.|-.++
T Consensus 410 ~~~EE~Lr~Kldtll~~l 427 (508)
T KOG3091|consen 410 TPDEEELRAKLDTLLAQL 427 (508)
T ss_pred CccHHHHHHHHHHHHHHh
Confidence 256777777776666553
No 449
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=62.92 E-value=1.5e+02 Score=36.76 Aligned_cols=48 Identities=15% Similarity=0.255 Sum_probs=25.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 797 DQKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRL 844 (913)
Q Consensus 797 eEKenIqEQIKELKKEIDELReKIkkLekELEeLkkKIeEAqaELdEL 844 (913)
.+|..++.+|..++.++..+++.|+....++..-...++....++.+.
T Consensus 79 ~~r~~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~~~~~~~ 126 (632)
T PF14817_consen 79 RRRRELEKEVERLRAEIQELDKEIESREREVSRQEASREQMLDKISDS 126 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555556666666666666665555555555554444444444433
No 450
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=62.30 E-value=2.1e+02 Score=34.53 Aligned_cols=13 Identities=15% Similarity=0.261 Sum_probs=4.9
Q ss_pred CHHHHHHHHHHHH
Q 002520 740 SVDDIDGSIRNME 752 (913)
Q Consensus 740 SVEELQeEIkeLE 752 (913)
+..+|..+.+.+.
T Consensus 47 ~~~~L~~~~~~l~ 59 (593)
T PF06248_consen 47 SAKDLIERSKSLA 59 (593)
T ss_pred hHHHHHHHHHHHH
Confidence 3333333333333
No 451
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=62.09 E-value=2.9e+02 Score=31.68 Aligned_cols=37 Identities=16% Similarity=0.270 Sum_probs=22.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 663 ENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKE 699 (913)
Q Consensus 663 PeLKaKIdeLekEIEeL~kqRdEInaELqeLReERdE 699 (913)
+.|...+..|+.+-..++.+++..+.....+..+...
T Consensus 23 ~~l~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~ 59 (310)
T PF09755_consen 23 EQLRKRIESLQQENRVLKRELETEKARCKHLQEENRA 59 (310)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777777777777666666555555544444443333
No 452
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=61.58 E-value=75 Score=28.03 Aligned_cols=14 Identities=14% Similarity=0.280 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHHH
Q 002520 812 EADSLRENVIKAEA 825 (913)
Q Consensus 812 EIDELReKIkkLek 825 (913)
.+..|..++.+|..
T Consensus 11 dVq~L~~kvdqLs~ 24 (56)
T PF04728_consen 11 DVQTLNSKVDQLSS 24 (56)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 453
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=61.57 E-value=4.7e+02 Score=33.96 Aligned_cols=59 Identities=19% Similarity=0.355 Sum_probs=27.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 663 ENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEI 725 (913)
Q Consensus 663 PeLKaKIdeLekEIEeL~kqRdEInaELqeLReERdELeSeLKkLVeEIkrLReEInEKrKEI 725 (913)
..+.+++++...+++...++.+.....+..++ ....+|..+..+++..+..|..++..+
T Consensus 184 Nq~l~klkq~~~ei~e~eke~a~yh~lLe~r~----~~~~rl~~l~~elr~~~~~i~~~~~~v 242 (984)
T COG4717 184 NQLLEKLKQERNEIDEAEKEYATYHKLLESRR----AEHARLAELRSELRADRDHIRALRDAV 242 (984)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555555555555555444333 223334444444444444444444433
No 454
>PRK11546 zraP zinc resistance protein; Provisional
Probab=61.38 E-value=97 Score=31.76 Aligned_cols=7 Identities=57% Similarity=0.923 Sum_probs=3.3
Q ss_pred CcHHHHH
Q 002520 761 PLKEEKQ 767 (913)
Q Consensus 761 sLqEEKQ 767 (913)
.|+.|++
T Consensus 43 ~LT~EQQ 49 (143)
T PRK11546 43 PLTTEQQ 49 (143)
T ss_pred cCCHHHH
Confidence 3444544
No 455
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=61.36 E-value=2.6e+02 Score=30.84 Aligned_cols=41 Identities=20% Similarity=0.200 Sum_probs=28.3
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 839 EKLKRLLGQFK-AADEIRQEAYKHWQSLKKQAYDKNQHFWKY 879 (913)
Q Consensus 839 aELdELqeElr-AaeEeRQEAyekIkELRkQ~DeLNsEFyq~ 879 (913)
..+..+-..++ ........+|.-+.+...-.+.++..|.+.
T Consensus 186 ~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~dkl~~~f~~~ 227 (291)
T PF10475_consen 186 SDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAMDKLQMHFTSA 227 (291)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 33444444555 356788889988888877788888877743
No 456
>PRK11519 tyrosine kinase; Provisional
Probab=61.04 E-value=3.2e+02 Score=34.00 Aligned_cols=39 Identities=10% Similarity=0.298 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHhhcCCCcHHHHH-HHHHHHHHHHHHHH
Q 002520 741 VDDIDGSIRNMEHRIAHETLPLKEEKQ-IIREIKQLKQRREQ 781 (913)
Q Consensus 741 VEELQeEIkeLE~QIQheSLsLqEEKQ-lIrEISQLEkeRKd 781 (913)
.++.+.++.. ++.++..+.+..|-+ .+..+..|+.++.+
T Consensus 283 L~~aE~~l~~--fr~~~~~vd~~~ea~~~l~~~~~l~~ql~~ 322 (719)
T PRK11519 283 LDVAENKLNA--FRQDKDSVDLPLEAKAVLDSMVNIDAQLNE 322 (719)
T ss_pred HHHHHHHHHH--HHHHcCCCCchHHHHHHHHHHHHHHHHHHH
Confidence 3444444444 455566567877766 66677666666554
No 457
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=60.68 E-value=1.9e+02 Score=32.87 Aligned_cols=29 Identities=14% Similarity=0.304 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 799 KDQIEEKMKFLRKEADSLRENVIKAEAAT 827 (913)
Q Consensus 799 KenIqEQIKELKKEIDELReKIkkLekEL 827 (913)
|.++.=+|+.|+..+.++.+.+..+..++
T Consensus 107 k~~l~yqvd~Lkd~lee~eE~~~~~~re~ 135 (302)
T PF09738_consen 107 KSALMYQVDLLKDKLEELEETLAQLQREY 135 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555566666666665555555554444
No 458
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=60.35 E-value=3.3e+02 Score=31.74 Aligned_cols=6 Identities=33% Similarity=0.739 Sum_probs=2.2
Q ss_pred HHHHHH
Q 002520 773 KQLKQR 778 (913)
Q Consensus 773 SQLEke 778 (913)
+.|+.+
T Consensus 288 ~~Lr~~ 293 (458)
T COG3206 288 QDLRQQ 293 (458)
T ss_pred HHHHHH
Confidence 333333
No 459
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=60.31 E-value=1.9e+02 Score=34.42 Aligned_cols=40 Identities=10% Similarity=0.140 Sum_probs=27.8
Q ss_pred HHHHHHHHhhcCCCcHHHHH-HHHHHHHHHHHHHHhhhccc
Q 002520 748 IRNMEHRIAHETLPLKEEKQ-IIREIKQLKQRREQISSSIG 787 (913)
Q Consensus 748 IkeLE~QIQheSLsLqEEKQ-lIrEISQLEkeRKdV~snIs 787 (913)
.+-+.++-+++-+++..+=. .+..|.+|+.++-+++..+.
T Consensus 263 ~aL~~fRn~~gvlDP~~~a~~~~~lI~~Le~qLa~~~aeL~ 303 (434)
T PRK15178 263 LELLKIQHIQKDIDPKETITAIYQLIAGFETQLAEAKAEYA 303 (434)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445666666677777777 88999999998876544433
No 460
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=60.17 E-value=1.3e+02 Score=29.02 Aligned_cols=27 Identities=22% Similarity=0.420 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 806 MKFLRKEADSLRENVIKAEAATQAVKK 832 (913)
Q Consensus 806 IKELKKEIDELReKIkkLekELEeLkk 832 (913)
++.+++.++.+++.++++...+..++.
T Consensus 89 ~~~l~~r~~~l~~~~~~l~~~l~~l~~ 115 (129)
T cd00584 89 IEFLDKKIEELTKQIEKLQKELAKLKD 115 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444443
No 461
>PLN02320 seryl-tRNA synthetase
Probab=60.14 E-value=51 Score=39.64 Aligned_cols=18 Identities=17% Similarity=0.423 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 002520 803 EEKMKFLRKEADSLRENV 820 (913)
Q Consensus 803 qEQIKELKKEIDELReKI 820 (913)
+.++..++++.+.+.++|
T Consensus 106 ~~~~~~lr~ern~~sk~i 123 (502)
T PLN02320 106 QKEVERLRAERNAVANKM 123 (502)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444444444333
No 462
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=60.04 E-value=1.5e+02 Score=27.80 Aligned_cols=51 Identities=14% Similarity=0.186 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 814 DSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQS 864 (913)
Q Consensus 814 DELReKIkkLekELEeLkkKIeEAqaELdELqeElrAaeEeRQEAyekIkE 864 (913)
+++..+++.+......|..+++.+.+....+..-..++..++..+++.|..
T Consensus 35 ~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a~e~Ir~ 85 (89)
T PF13747_consen 35 DELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSAIETIRA 85 (89)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444455554445444555555555554443
No 463
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=59.62 E-value=2.2e+02 Score=34.36 Aligned_cols=21 Identities=29% Similarity=0.452 Sum_probs=13.9
Q ss_pred CCHHHHHHHHHHHHHHHhhcC
Q 002520 739 ISVDDIDGSIRNMEHRIAHET 759 (913)
Q Consensus 739 KSVEELQeEIkeLE~QIQheS 759 (913)
-+.++|+..|.+|..++....
T Consensus 7 l~~edl~~~I~~L~~~i~~~k 27 (593)
T PF06248_consen 7 LSKEDLRKSISRLSRRIEELK 27 (593)
T ss_pred CCHhHHHHHHHHHHHHHHHHH
Confidence 566777777777776655443
No 464
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=59.59 E-value=66 Score=39.10 Aligned_cols=34 Identities=21% Similarity=0.138 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 840 KLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKN 873 (913)
Q Consensus 840 ELdELqeElrAaeEeRQEAyekIkELRkQ~DeLN 873 (913)
++.++..++.++..++.+.|..|.++-.++.+++
T Consensus 599 ~~~~~~~~~~~~~~~l~~~~~~w~~l~~~~~~~~ 632 (638)
T PRK10636 599 ELTACLQQQASAKSGLEECEMAWLEAQEQLEQML 632 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566666666666666667777766666555443
No 465
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=59.49 E-value=86 Score=32.60 Aligned_cols=20 Identities=10% Similarity=-0.047 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 002520 862 WQSLKKQAYDKNQHFWKYKD 881 (913)
Q Consensus 862 IkELRkQ~DeLNsEFyq~Rr 881 (913)
+.++.+|...+...|-+..+
T Consensus 117 veel~eqV~el~~i~emv~~ 136 (157)
T COG3352 117 VEELEEQVNELKMIVEMVIK 136 (157)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 33444444444444433333
No 466
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=59.36 E-value=2.7e+02 Score=30.34 Aligned_cols=80 Identities=10% Similarity=0.137 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Q 002520 805 KMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQE----AYKHWQSLKKQAYDKNQHFWKYK 880 (913)
Q Consensus 805 QIKELKKEIDELReKIkkLekELEeLkkKIeEAqaELdELqeElrAaeEeRQE----AyekIkELRkQ~DeLNsEFyq~R 880 (913)
.|..+|+.+.++...+..++..+...+..+..+.......+.+...+-+++.. ..+.+..|...=......--+.+
T Consensus 33 ~Ie~LK~~i~~~E~~l~~~r~~~~~aK~~Y~~ai~~Rs~sQrEvn~LLqRK~sWs~~DleRFT~Lyr~dH~~e~~e~~ak 112 (207)
T PF05546_consen 33 EIEKLKKSIEELEDELEAARQEVREAKAAYDDAIQQRSSSQREVNELLQRKHSWSPADLERFTELYRNDHENEQAEEEAK 112 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 55566666666666666666666666666666666666555555555554322 34555555554444444433333
Q ss_pred HHHH
Q 002520 881 DDTK 884 (913)
Q Consensus 881 r~l~ 884 (913)
..+.
T Consensus 113 ~~l~ 116 (207)
T PF05546_consen 113 EALE 116 (207)
T ss_pred HHHH
Confidence 3333
No 467
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=59.25 E-value=29 Score=39.77 Aligned_cols=131 Identities=13% Similarity=0.249 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHhhhcccchhH
Q 002520 712 RSARESLKSKRQEIDSVQSRINMMKNAISVDDIDGSIRNMEHRIAHETLPLKEEKQIIREIKQLKQRREQISSSIGEHDE 791 (913)
Q Consensus 712 krLReEInEKrKEIesLQSeLsKLrS~KSVEELQeEIkeLE~QIQheSLsLqEEKQlIrEISQLEkeRKdV~snIs~kak 791 (913)
..++.......++++.....+...- .+.++.+.........++....-.+.+ +.++|..|++........+. +
T Consensus 58 ~qLrE~~et~~KE~~~~eKe~kE~~-~K~~~~~~e~~ek~~k~l~el~~~~~e---lkkEie~IKk~q~e~~~~i~---~ 130 (370)
T PF02994_consen 58 NQLREQDETPEKELKNKEKELKENI-IKNLEVLKEEKEKSIKELNELKKRIKE---LKKEIENIKKNQSEMKLEIE---N 130 (370)
T ss_dssp ----------------------------------------------------------------H---------------
T ss_pred HHHHHhhhhhhhhhhhhhhhhhHhh-hhhcccccchhhhhHHHHHHHHHHHHH---HHHHHHHHhhhHHHHHHHHH---H
Q ss_pred HHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 792 VQLAFDQK-DQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFK 849 (913)
Q Consensus 792 IEqSLeEK-enIqEQIKELKKEIDELReKIkkLekELEeLkkKIeEAqaELdELqeElr 849 (913)
+...+... ..|..+|.++...+..+..++..+...+..+.+.+..+...+.++..+.+
T Consensus 131 ~~~~~~~~~~~l~~Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlEnrsR 189 (370)
T PF02994_consen 131 LKKKLENIDESLNSRIDELEERISELEDRIEEIEQAIKELEKRIKKLEDKLDDLENRSR 189 (370)
T ss_dssp -------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcc
No 468
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=59.23 E-value=2.9e+02 Score=30.74 Aligned_cols=80 Identities=13% Similarity=0.165 Sum_probs=40.6
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 002520 661 DDENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKNAIS 740 (913)
Q Consensus 661 dDPeLKaKIdeLekEIEeL~kqRdEInaELqeLReERdELeSeLKkLVeEIkrLReEInEKrKEIesLQSeLsKLrS~KS 740 (913)
+...++.++.+++.++.....+++.....+...+.. +....+++...+..+...+++++..+... +. ++-|
T Consensus 80 d~~~~~~~l~~a~a~l~~a~a~l~~~~~~~~~~~~~-------~~~~~~~i~~a~~~l~~a~~~~~R~~~L~-~~-g~vS 150 (346)
T PRK10476 80 DPRPYELTVAQAQADLALADAQIMTTQRSVDAERSN-------AASANEQVERARANAKLATRTLERLEPLL-AK-GYVS 150 (346)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HC-CCcC
Confidence 446677788888887777776666655444333222 22223334444444444444444433222 22 2566
Q ss_pred HHHHHHHHH
Q 002520 741 VDDIDGSIR 749 (913)
Q Consensus 741 VEELQeEIk 749 (913)
..+++....
T Consensus 151 ~~~~~~a~~ 159 (346)
T PRK10476 151 AQQVDQART 159 (346)
T ss_pred HHHHHHHHH
Confidence 666665443
No 469
>TIGR00833 actII Transport protein. Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. This sub-family includes the S. coelicolor ActII3 protein, which may play a role in drug resistance, and the M. tuberculosis MmpL7 protein, which catalyzes export of an outer membrane lipid, phthiocerol dimycocerosate.
Probab=59.22 E-value=4.9e+02 Score=33.37 Aligned_cols=58 Identities=16% Similarity=0.086 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 675 KVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRI 732 (913)
Q Consensus 675 EIEeL~kqRdEInaELqeLReERdELeSeLKkLVeEIkrLReEInEKrKEIesLQSeL 732 (913)
.+.+....+.+...-+....++.+.+.++|+.+..-+++...-..+....++.+++.+
T Consensus 478 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (910)
T TIGR00833 478 QLDEFSDQLTSRQAYLLQDAEKIAEAIAGLRLVQAGMRLDGENLGQVSLAVRLMQQAI 535 (910)
T ss_pred hHHhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333344444444444443333333333333333333333333
No 470
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=59.12 E-value=3.5e+02 Score=33.17 Aligned_cols=29 Identities=21% Similarity=0.326 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 704 LEAAISDERSARESLKSKRQEIDSVQSRI 732 (913)
Q Consensus 704 LKkLVeEIkrLReEInEKrKEIesLQSeL 732 (913)
+.++.+++..+.+++.+++.+++.++.++
T Consensus 95 ~~~~~~~i~~l~~~~~~L~~~~~~l~~~~ 123 (646)
T PRK05771 95 LEKIEKEIKELEEEISELENEIKELEQEI 123 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444433
No 471
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=58.79 E-value=1e+02 Score=32.87 Aligned_cols=40 Identities=10% Similarity=0.189 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 694 RASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRIN 733 (913)
Q Consensus 694 ReERdELeSeLKkLVeEIkrLReEInEKrKEIesLQSeLs 733 (913)
..++..|+.+-+.++.+.-.+...+..++.+|..++.+..
T Consensus 174 ~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~~~ 213 (221)
T PF05700_consen 174 GEELRYLEQRWKELVSKNLEIEVACEELEQEIEQLKRKAA 213 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555566666666677777777777777777777665543
No 472
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=58.63 E-value=2.5e+02 Score=29.72 Aligned_cols=202 Identities=15% Similarity=0.128 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhccCCCCHHHHHHHHHH
Q 002520 673 QSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEI--DSVQSRINMMKNAISVDDIDGSIRN 750 (913)
Q Consensus 673 ekEIEeL~kqRdEInaELqeLReERdELeSeLKkLVeEIkrLReEInEKrKEI--esLQSeLsKLrS~KSVEELQeEIke 750 (913)
+..+...+..++.+...+..+......+..+-+.+......+-..+..+-.-= ..|...|..+. ...+.+..-+..
T Consensus 3 D~~F~~~k~~i~~Le~~Lk~l~~~~~~l~~~r~ela~~~~efa~~~~~L~~~E~~~~l~~~l~~~a--~~~~~~~~~~~~ 80 (216)
T cd07627 3 DEWFIEKKQYLDSLESQLKQLYKSLELVSSQRKELASATEEFAETLEALSSLELSKSLSDLLAALA--EVQKRIKESLER 80 (216)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHhHHHHHHHH--HHHHHHHHHHHH
Q ss_pred HHHH-HhhcCCCcHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHhHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Q 002520 751 MEHR-IAHETLPLKEEKQIIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKF----LRKEADSLRENVIKAEA 825 (913)
Q Consensus 751 LE~Q-IQheSLsLqEEKQlIrEISQLEkeRKdV~snIs~kakIEqSLeEKenIqEQIKE----LKKEIDELReKIkkLek 825 (913)
...+ .-+...+|.+=-..+.=++.+-..|.++-.... .+...|.++..-.+++.. ....+..+...|+.++.
T Consensus 81 ~a~~e~~~l~~~L~ey~r~~~Svk~~~~~R~~~~~~~~---~~~~~L~k~~~~~~Kl~~~~~s~~~K~~~~~~ei~~~e~ 157 (216)
T cd07627 81 QALQDVLTLGVTLDEYIRSIGSVRAAFAQRQKLWQYWQ---SAESELSKKKAQLEKLKRQGKTQQEKLNSLLSELEEAER 157 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 826 ATQAVKKLHREESEKLKRL-----LGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKY 879 (913)
Q Consensus 826 ELEeLkkKIeEAqaELdEL-----qeElrAaeEeRQEAyekIkELRkQ~DeLNsEFyq~ 879 (913)
.....+.+++.+.+.+..- ..+.......+..-.+..-+..++.-+++..||+.
T Consensus 158 ~~~~a~~~~e~is~~~k~El~rF~~~r~~dfk~~l~~~~e~~ie~~k~~ie~We~f~~~ 216 (216)
T cd07627 158 RASELKKEFEEVSELIKSELERFERERVEDFRNSVEIYLESAIESQKELIELWETFYQR 216 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
No 473
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=58.57 E-value=28 Score=35.49 Aligned_cols=132 Identities=13% Similarity=0.225 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhhc---C-C-CcHHHHHHHHHHHHHHHHHHHhhh
Q 002520 710 DERSARESLKSKRQEIDSVQSRINMMKNAISVDDIDGSIRNMEHRIAHE---T-L-PLKEEKQIIREIKQLKQRREQISS 784 (913)
Q Consensus 710 EIkrLReEInEKrKEIesLQSeLsKLrS~KSVEELQeEIkeLE~QIQhe---S-L-sLqEEKQlIrEISQLEkeRKdV~s 784 (913)
++.++...++-+..+|+.|+.++..++ .+..+++.-+..|+.--.-. . | |+.-.=.+.-.+....+-+=.+-+
T Consensus 7 ~le~l~a~lq~l~~qie~L~~~i~~l~--~~~~e~~~~~~tl~~lk~~~~g~E~LVpvGag~fv~~kv~~~~kviV~iGs 84 (145)
T COG1730 7 ELEELAAQLQILQSQIESLQAQIAALN--AAISELQTAIETLENLKGAGEGKEVLVPVGAGLFVKAKVKDMDKVIVSIGS 84 (145)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCceEEEEeccCceEEEEcCC
Q ss_pred cccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 785 SIGEHDEVQLAFDQKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLG 846 (913)
Q Consensus 785 nIs~kakIEqSLeEKenIqEQIKELKKEIDELReKIkkLekELEeLkkKIeEAqaELdELqe 846 (913)
.+...-.+...++ .|+++++.+.+.+..+...+.++...+..+..+...+..+...-+.
T Consensus 85 g~~ae~~~~eAie---~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~q~~~~~~~ 143 (145)
T COG1730 85 GYYAEKSADEAIE---FLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQQKQAAAQK 143 (145)
T ss_pred ceeeeecHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
No 474
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=58.26 E-value=1.3e+02 Score=27.43 Aligned_cols=71 Identities=14% Similarity=0.324 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 002520 665 LREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAE--KLEAAISDERSARESLKSKRQEIDSVQSRINMMK 736 (913)
Q Consensus 665 LKaKIdeLekEIEeL~kqRdEInaELqeLReERdELeS--eLKkLVeEIkrLReEInEKrKEIesLQSeLsKLr 736 (913)
++-.++.++..+.++...-..+...+.....+.+++.. .+..++.... |...+...++.|..+...+.++.
T Consensus 12 l~P~l~~~~~~l~el~~sQ~~L~~~i~~~~~~L~~~~~~~~~~~~~~~~~-y~~KL~~ikkrm~~l~~~l~~lk 84 (92)
T PF14712_consen 12 LEPDLDRLDQQLQELRQSQEELLQQIDRLNEKLKELNEVEQINEPFDLDP-YVKKLVNIKKRMSNLHERLQKLK 84 (92)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhH-HHHHHHHHHHHHHHHHHHHHHHH
No 475
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=57.93 E-value=2.7e+02 Score=33.34 Aligned_cols=115 Identities=13% Similarity=0.194 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhcC-C-CcHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 002520 741 VDDIDGSIRNMEHRIAHET-L-PLKEEKQIIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKFLRKEADSLRE 818 (913)
Q Consensus 741 VEELQeEIkeLE~QIQheS-L-sLqEEKQlIrEISQLEkeRKdV~snIs~kakIEqSLeEKenIqEQIKELKKEIDELRe 818 (913)
++.+..+++..+.-++-+- . +.+.++.++.+..+|..+=+. .+.+++.+.++-..+...+.+++.
T Consensus 152 ~~~~~~e~~~Y~~~l~~Le~~~~~~~~~~~~~e~~~l~~eE~~-------------L~q~lk~le~~~~~l~~~l~e~~~ 218 (447)
T KOG2751|consen 152 VEDAEDEVDTYKACLQRLEQQNQDVSEEDLLKELKNLKEEEER-------------LLQQLEELEKEEAELDHQLKELEF 218 (447)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 819 NVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQ 868 (913)
Q Consensus 819 KIkkLekELEeLkkKIeEAqaELdELqeElrAaeEeRQEAyekIkELRkQ 868 (913)
+...+..+......++..-+-.+-+.+.+++.++.++.-+..++..|++.
T Consensus 219 ~~~~~~e~~~~~~~ey~~~~~q~~~~~del~Sle~q~~~s~~qldkL~kt 268 (447)
T KOG2751|consen 219 KAERLNEEEDQYWREYNNFQRQLIEHQDELDSLEAQIEYSQAQLDKLRKT 268 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhh
No 476
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=57.89 E-value=55 Score=38.10 Aligned_cols=78 Identities=21% Similarity=0.299 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 801 QIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKY 879 (913)
Q Consensus 801 nIqEQIKELKKEIDELReKIkkLekELEeLkkKIeEAqaELdELqeElrAaeEeRQEAyekIkELRkQ~DeLNsEFyq~ 879 (913)
.+..+++.+++++.+++.++.+++..+..+.+... ....-.+..+.+..+.+.+.+....+.++..++..+.+.+.+.
T Consensus 331 ~l~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~-~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 331 ELKEKLEELEEELEELKEELEKLKKNLKKLKKLKK-QGKLPPEKKEQLKKLKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc-cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 477
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=57.87 E-value=84 Score=28.61 Aligned_cols=69 Identities=13% Similarity=0.299 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHH
Q 002520 676 VDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKNAISVDDIDG 746 (913)
Q Consensus 676 IEeL~kqRdEInaELqeLReERdELeSeLKkLVeEIkrLReEInEKrKEIesLQSeLsKLrS~KSVEELQe 746 (913)
+.++.+-+++++..+..+..+.+.+..+...+..+...+...++.+...++++-+.....+ .++.+|..
T Consensus 21 l~~l~~~l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~k~~~v~~~~~~v~~~g--~~v~~l~~ 89 (90)
T PF06103_consen 21 LKKLKKTLDEVNKTIDTLQEQVDPITKEINDLLHNTNELLEDVNEKLEKVDPVFEAVADLG--ESVSELNS 89 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH--HHHHHHhc
No 478
>smart00283 MA Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.
Probab=57.68 E-value=2.2e+02 Score=28.97 Aligned_cols=219 Identities=14% Similarity=0.149 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHH
Q 002520 663 ENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKNAISVD 742 (913)
Q Consensus 663 PeLKaKIdeLekEIEeL~kqRdEInaELqeLReERdELeSeLKkLVeEIkrLReEInEKrKEIesLQSeLsKLrS~KSVE 742 (913)
..+...+......+........++...+......-..+.................+......+..+......+. ...+
T Consensus 21 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~i~--~~~~ 98 (262)
T smart00283 21 EELAERMEELSASIEEVAANADEIAATAQSAAEAAEEGREAVEDAITAMDQIREVVEEAVSAVEELEESSDEIG--EIVS 98 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH
Q ss_pred HHHHHHHHHH-------------------HHHhhcCC-CcHHHHH-HHHHHHHHHHHHHHhhhcccchhHHHHHHHhHHH
Q 002520 743 DIDGSIRNME-------------------HRIAHETL-PLKEEKQ-IIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQ 801 (913)
Q Consensus 743 ELQeEIkeLE-------------------~QIQheSL-sLqEEKQ-lIrEISQLEkeRKdV~snIs~kakIEqSLeEKen 801 (913)
+|.....+.+ +..-...| .|.+.=. ...+|..|-..... .+......-..
T Consensus 99 ~i~~~a~~~~~la~na~ieA~~ag~~g~~~~~va~~I~~la~~t~~~~~ev~~~~~~~~~---------~~~~~~~~~~~ 169 (262)
T smart00283 99 VIDDIADQTNLLALNAAIEAARAGEAGRGFAVVADEVRKLAERSAESAKEIESLIKEIQE---------ETNEAVAAMEE 169 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 802 IEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKD 881 (913)
Q Consensus 802 IqEQIKELKKEIDELReKIkkLekELEeLkkKIeEAqaELdELqeElrAaeEeRQEAyekIkELRkQ~DeLNsEFyq~Rr 881 (913)
+...+......+......+..+...+..+...+.++......+.................+..+..........+.+...
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~l~~ 249 (262)
T smart00283 170 SSSEVEEGVELVEETGEALEEIVDSVEEIADLVQEIAAATDEQAAGSEEVNAAIDEIAQVTQETAAMSEEISAAAEELSG 249 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHhhhc
Q 002520 882 DTKQANDLASK 892 (913)
Q Consensus 882 ~l~kARdLAa~ 892 (913)
.....+.++.+
T Consensus 250 ~~~~l~~~~~~ 260 (262)
T smart00283 250 LAEELKELVEQ 260 (262)
T ss_pred HHHHHHHHHhh
No 479
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=57.64 E-value=1.7e+02 Score=29.36 Aligned_cols=85 Identities=19% Similarity=0.313 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhhcccchhHHHHHHHhHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHH
Q 002520 767 QIIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKFL-------------------RKEADSLRENVIKAEAAT 827 (913)
Q Consensus 767 QlIrEISQLEkeRKdV~snIs~kakIEqSLeEKenIqEQIKEL-------------------KKEIDELReKIkkLekEL 827 (913)
+....+.++.....++...+-.+.+++.+|.+-+...+.+..+ .+-.++|++++..++..+
T Consensus 7 ~~q~~l~q~QqLq~ql~~~~~qk~~le~qL~E~~~al~Ele~l~eD~~vYk~VG~llvk~~k~~~~~eL~er~E~Le~ri 86 (119)
T COG1382 7 EVQAQLAQLQQLQQQLQKVILQKQQLEAQLKEIEKALEELEKLDEDAPVYKKVGNLLVKVSKEEAVDELEERKETLELRI 86 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHhhhHHhhhhHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 828 QAVKKLHREESEKLKRLLGQFKAA 851 (913)
Q Consensus 828 EeLkkKIeEAqaELdELqeElrAa 851 (913)
+.|.++-..++.++.+++.....+
T Consensus 87 ~tLekQe~~l~e~l~eLq~~i~~~ 110 (119)
T COG1382 87 KTLEKQEEKLQERLEELQSEIQKA 110 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
No 480
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=56.95 E-value=4.7e+02 Score=32.45 Aligned_cols=154 Identities=12% Similarity=0.092 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHH--H
Q 002520 670 KAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKNAISVDDIDG--S 747 (913)
Q Consensus 670 deLekEIEeL~kqRdEInaELqeLReERdELeSeLKkLVeEIkrLReEInEKrKEIesLQSeLsKLrS~KSVEELQe--E 747 (913)
.+++..+..+..+.++.-..++..+++|..+...-..+...+......-..+.+.++.|...-.......+..|++- +
T Consensus 584 ~e~qrH~~~l~~~k~~QlQ~l~~~~eer~~i~e~a~~La~R~eea~e~qe~L~~~~~~L~~~~~~~lp~l~~AErdFk~E 663 (741)
T KOG4460|consen 584 EEIQRHVKLLCDQKKKQLQDLSYCREERKSLREMAERLADRYEEAKEKQEDLMNRMKKLLHSFHSELPVLSDAERDFKKE 663 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcccccCCcchhHHHHHHHH
Q ss_pred HHHHHHHHhhcCCCcHHHHH-HHHHHHHHHHHHHHhhhcccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 748 IRNMEHRIAHETLPLKEEKQ-IIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKFLRKEADSLRENVIKAEAA 826 (913)
Q Consensus 748 IkeLE~QIQheSLsLqEEKQ-lIrEISQLEkeRKdV~snIs~kakIEqSLeEKenIqEQIKELKKEIDELReKIkkLekE 826 (913)
.+.+..+.+++.-.+.--|. +-++-+-..+....+..+.= ...--+...|+.-++.+-.+++..-++.+.++..
T Consensus 664 lq~~~~~~~~L~~~iET~~~~~~KQ~~H~~~v~~al~K~~Y-----~l~~~Q~~~iqsiL~~L~~~i~~~~k~VK~i~~~ 738 (741)
T KOG4460|consen 664 LQLIPDQLRHLGNAIETVTMKKDKQQQHMEKVLSALPKPTY-----ILSAYQRKCIQSILKELGEHIREMVKQVKDIRNH 738 (741)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcc-----cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred HH
Q 002520 827 TQ 828 (913)
Q Consensus 827 LE 828 (913)
++
T Consensus 739 v~ 740 (741)
T KOG4460|consen 739 VN 740 (741)
T ss_pred hc
No 481
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=56.52 E-value=73 Score=28.35 Aligned_cols=50 Identities=22% Similarity=0.286 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 800 DQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFK 849 (913)
Q Consensus 800 enIqEQIKELKKEIDELReKIkkLekELEeLkkKIeEAqaELdELqeElr 849 (913)
..|++++..++..++.+.+++..++.........+..+...|.++.....
T Consensus 2 ~~i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n~k 51 (71)
T PF10779_consen 2 QDIKEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKSNTK 51 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 482
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=56.46 E-value=89 Score=29.93 Aligned_cols=89 Identities=16% Similarity=0.214 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhhcccchhHHHHHHHhHHHHHHHHHHHHHH----H-----------------------------
Q 002520 767 QIIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKFLRKE----A----------------------------- 813 (913)
Q Consensus 767 QlIrEISQLEkeRKdV~snIs~kakIEqSLeEKenIqEQIKELKKE----I----------------------------- 813 (913)
++..++++|+.++..+...+. .+..++.+.....+-|+.++.. +
T Consensus 3 ql~~q~~ql~~~i~~l~~~i~---~l~~~i~e~~~~~~~L~~l~~~~~~~~lv~lg~~~~v~~~v~~~~~v~v~iG~g~~ 79 (126)
T TIGR00293 3 QLAAELQILQQQVESLQAQIA---ALRALIAELETAIETLEDLKGAEGKETLVPVGAGSFVKAKVKDTDKVLVSIGSGYY 79 (126)
T ss_pred hHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhccccCCCeEEEEcCCCeEEEEEeCCCCEEEEEcCCCEE
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 814 --DSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEA 858 (913)
Q Consensus 814 --DELReKIkkLekELEeLkkKIeEAqaELdELqeElrAaeEeRQEA 858 (913)
..+.+.++-++..++.|.+.++.+...+..++++...+...++.+
T Consensus 80 vE~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~i~~~l~~~ 126 (126)
T TIGR00293 80 VEKDAEEAIEFLKKRIEELEKAIEKLQEALAELASRAQQLEQEAQQL 126 (126)
T ss_pred EEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
No 483
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=56.29 E-value=5.2e+02 Score=32.77 Aligned_cols=182 Identities=12% Similarity=0.154 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC--HHHHHHH
Q 002520 670 KAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKNAIS--VDDIDGS 747 (913)
Q Consensus 670 deLekEIEeL~kqRdEInaELqeLReERdELeSeLKkLVeEIkrLReEInEKrKEIesLQSeLsKLrS~KS--VEELQeE 747 (913)
+.+.............+...+++.+.....++..++.++....+++..+.+.+.+|..+... . +.+ =..+...
T Consensus 228 ~~l~~~~~~~L~~i~~l~~~~~~~~~~L~~v~~~~~~L~~~~~qL~~~L~~vK~~L~~~l~~-~----C~~~~C~~i~~~ 302 (806)
T PF05478_consen 228 DQLGSNVYPALDSILDLAQAMQETKELLQNVNSSLKDLQEYQSQLRDGLRGVKRDLNNTLQD-L----CTNRECNSILSS 302 (806)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-h----CCChhhHHHHHh
Q ss_pred HHHHHHHHhhcCC-CcHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 002520 748 IRNMEHRIAHETL-PLKEEKQIIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMK-FLRKEADSLRENVIKAEA 825 (913)
Q Consensus 748 IkeLE~QIQheSL-sLqEEKQlIrEISQLEkeRKdV~snIs~kakIEqSLeEKenIqEQIK-ELKKEIDELReKIkkLek 825 (913)
...++--+.-.+| ++...-..++++ ++..... .+++....-.+|...|+ ..+.-+..++..++++..
T Consensus 303 ~~~l~l~~~~~qLP~v~~~l~~l~~v--~~~nl~~---------~v~~~~~~~~~ip~~v~~qt~~~v~~ik~~l~~~~~ 371 (806)
T PF05478_consen 303 LDILQLDADFSQLPNVTSQLNNLEEV--IKTNLSS---------IVQEGNSRFNDIPEKVQNQTSDVVPPIKRDLDSIGK 371 (806)
T ss_pred ccccccCCCcccCCChHHHHHHHHHH--HhccHHH---------HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 826 ATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYK 880 (913)
Q Consensus 826 ELEeLkkKIeEAqaELdELqeElrAaeEeRQEAyekIkELRkQ~DeLNsEFyq~R 880 (913)
.+.... +.+... +.......+.......+.+....+.|-.||
T Consensus 372 ~i~~~a----------~~i~~~---~~~~~s~~~~~~~~~~~~~~~~~~~y~~yR 413 (806)
T PF05478_consen 372 QIRSQA----------KQIPNQ---IDSNISDILNNTERSSRSFEDEYEKYDSYR 413 (806)
T ss_pred HHHHHH----------HHhHHH---HHHHHHHHHHHHHHHhhcchhHHHHHHHHH
No 484
>PRK11546 zraP zinc resistance protein; Provisional
Probab=56.16 E-value=54 Score=33.54 Aligned_cols=67 Identities=18% Similarity=0.216 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 667 EQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRIN 733 (913)
Q Consensus 667 aKIdeLekEIEeL~kqRdEInaELqeLReERdELeSeLKkLVeEIkrLReEInEKrKEIesLQSeLs 733 (913)
++.+.+++-.++...+-..++..+-.++.+++.+...=++-.+.|+.+..||.+++.++..++-++.
T Consensus 47 EQQa~~q~I~~~f~~~t~~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL~e~r~~~~ 113 (143)
T PRK11546 47 EQQAAWQKIHNDFYAQTSALRQQLVSKRYEYNALLTANPPDSSKINAVAKEMENLRQSLDELRVKRD 113 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
No 485
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=55.78 E-value=2.7e+02 Score=32.15 Aligned_cols=90 Identities=13% Similarity=0.177 Sum_probs=0.0
Q ss_pred chhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 788 EHDEVQLAFDQKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKK 867 (913)
Q Consensus 788 ~kakIEqSLeEKenIqEQIKELKKEIDELReKIkkLekELEeLkkKIeEAqaELdELqeElrAaeEeRQEAyekIkELRk 867 (913)
.+.-+...+.....++.++..+.++.+.|+..++++.++++.+.....+.. .+|..+|-.+-+++...+..+..+..
T Consensus 128 i~el~d~~l~~~~~l~~~~~~L~~enerL~~e~~~~~~qlE~~v~~K~~~E---~~L~~KF~~vLNeKK~KIR~lq~~L~ 204 (342)
T PF06632_consen 128 IRELFDWCLDANSRLQAENEHLQKENERLESEANKLLKQLEKFVNAKEEHE---EDLYAKFVLVLNEKKAKIRELQRLLA 204 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHH
Q 002520 868 QAYDKNQHFWKYK 880 (913)
Q Consensus 868 Q~DeLNsEFyq~R 880 (913)
.+........+.+
T Consensus 205 ~~~~~~~~~~~~~ 217 (342)
T PF06632_consen 205 SAKEEEKSPKQER 217 (342)
T ss_dssp HHHHHHHHHH---
T ss_pred Hhhccccchhhhh
No 486
>PF01496 V_ATPase_I: V-type ATPase 116kDa subunit family ; InterPro: IPR002490 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents the 116kDa subunit (or subunit a) and subunit I found in the V0 or A0 complex of V- or A-ATPases, respectively. The 116kDa subunit is a transmembrane glycoprotein required for the assembly and proton transport activity of the ATPase complex. Several isoforms of the 116kDa subunit exist, providing a potential role in the differential targeting and regulation of the V-ATPase for specific organelles []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 2RPW_X 2NVJ_A 2JTW_A 3RRK_A.
Probab=55.50 E-value=34 Score=42.32 Aligned_cols=216 Identities=10% Similarity=0.109 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHhccCCC
Q 002520 675 KVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLK---------------SKRQEIDSVQSRINMMKNAI 739 (913)
Q Consensus 675 EIEeL~kqRdEInaELqeLReERdELeSeLKkLVeEIkrLReEIn---------------EKrKEIesLQSeLsKLrS~K 739 (913)
++..++............--.+++++..+|+.+.++++.+...+. +++.+++.+.+++.... .
T Consensus 11 qF~Dln~~~~~fqr~f~~ev~r~de~erkL~~le~~I~k~~~~~~~~~~~~~~~~~~~i~~le~~l~~le~~l~e~~--~ 88 (759)
T PF01496_consen 11 QFRDLNEDVSAFQRKFVNEVRRCDEMERKLRFLEEEIKKLKIPLPEKNDKPDAPKPKEIDELEEELEELEEELRELN--E 88 (759)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEECccchhHHHHHhhhccccHHHHHHHHHHHHHHHHHhcCcccccccccccchhhHHHHHHHHHHHHHHHHHHHH--H
Q ss_pred CHHHHHHHHHHHHHHHhhcC--C-CcHHH-HHHHHHHHHHHHHHHHhh-------hcccchhHHHHHHHhHHHHHHHHHH
Q 002520 740 SVDDIDGSIRNMEHRIAHET--L-PLKEE-KQIIREIKQLKQRREQIS-------SSIGEHDEVQLAFDQKDQIEEKMKF 808 (913)
Q Consensus 740 SVEELQeEIkeLE~QIQheS--L-sLqEE-KQlIrEISQLEkeRKdV~-------snIs~kakIEqSLeEKenIqEQIKE 808 (913)
+.+.|++++.++..+..... . .+.+. .+.+...+.|......+. .++.-.-...+.-.=+..+....+.
T Consensus 89 ~~e~L~~~~~~L~E~~~~L~~~~~~l~~~~~~~l~~~~~l~~~~~~l~~~~~~~~~f~~G~I~~~~~~~f~~~l~r~~~~ 168 (759)
T PF01496_consen 89 NLEKLEEELNELEEEKNVLEEEIEFLEELKLEELEPWKNLDIDLEELESSKFLNLGFIAGVIPREKIESFERILWRATRG 168 (759)
T ss_dssp ---------------------------------------------------------------HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcccchhhhccccceeeeEEEEEEehhhHHHHHHHHHHhccC
Q ss_pred ------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 809 ------------------------------LRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEA 858 (913)
Q Consensus 809 ------------------------------LKKEIDELReKIkkLekELEeLkkKIeEAqaELdELqeElrAaeEeRQEA 858 (913)
.+...+++++-++.+....-.+-..-...++.+.+++++.+.+++++++.
T Consensus 169 N~fi~~~~Ie~~~~d~~e~~~k~v~vv~~~~~~~~~kv~~il~~~~f~~~~~p~~~~~p~e~~~~l~~~i~~l~~~~~~~ 248 (759)
T PF01496_consen 169 NIFIRFSEIEEILEDPKEEVEKEVFVVFFSGKELEEKVKKILRSFGFERYDLPEDEGTPEEAIKELEEEIEELEKELEEL 248 (759)
T ss_dssp -----S------EEEE-EE-SSSEEEEEEEEGGGHHHHHHHHHTTT--B----GGGGG-HHHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEeeecccccccceeeeeeEEEEEEchhhHHHHHHHhhccCceecCCCCccccHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 002520 859 YKHWQSLKKQAYDKNQHFWKYKDDTKQANDLASK 892 (913)
Q Consensus 859 yekIkELRkQ~DeLNsEFyq~Rr~l~kARdLAa~ 892 (913)
.+++.++.++.......++.+-+..++..+...+
T Consensus 249 ~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~ 282 (759)
T PF01496_consen 249 EEELKKLLEKYAEELEAWYEYLRKEKEIYEALNK 282 (759)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 487
>PHA02414 hypothetical protein
Probab=55.06 E-value=93 Score=30.34 Aligned_cols=84 Identities=12% Similarity=0.268 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHH--HhccCCCCHHHHHHHHHHHHHHHhhcC--CCcHHHHH--HHHHHHHHHHHHHHhhhcccch
Q 002520 716 ESLKSKRQEIDSVQSRI--NMMKNAISVDDIDGSIRNMEHRIAHET--LPLKEEKQ--IIREIKQLKQRREQISSSIGEH 789 (913)
Q Consensus 716 eEInEKrKEIesLQSeL--sKLrS~KSVEELQeEIkeLE~QIQheS--LsLqEEKQ--lIrEISQLEkeRKdV~snIs~k 789 (913)
.+|+.+..+++.|.+++ +.+-...+-.||...+.+|..-+-..- +-+..||+ +-=+|.+|+..+..+...-..+
T Consensus 4 ~~in~Lv~~v~~ledKiQ~Gelt~kgdn~eL~~av~ELRdivvslDKd~Av~sEKqshi~yQi~~Lee~i~aL~~~n~ke 83 (111)
T PHA02414 4 KEINNLVSQVETLEDKIQEGELTDKGDNKELEVAVAELRDIVVSLDKDVAVNSEKQSHIYYQIERLEEKISALAESNKKE 83 (111)
T ss_pred hHHHHHHHHHHHHHHHHhcCccccCCchHHHHHHHHHHHHHHHHhhhHhhhhHHHhhHHHHHHHHHHHHHHHHHhccccc
Q ss_pred hHHHHHHHhH
Q 002520 790 DEVQLAFDQK 799 (913)
Q Consensus 790 akIEqSLeEK 799 (913)
..-++.+-++
T Consensus 84 d~~KkD~vEk 93 (111)
T PHA02414 84 DTEKKDTVEK 93 (111)
T ss_pred cchhhHHHHH
No 488
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=54.94 E-value=97 Score=30.11 Aligned_cols=70 Identities=11% Similarity=0.143 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHH
Q 002520 799 KDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADE------------IRQEAYKHWQSLK 866 (913)
Q Consensus 799 KenIqEQIKELKKEIDELReKIkkLekELEeLkkKIeEAqaELdELqeElrAaeE------------eRQEAyekIkELR 866 (913)
|.+|=++|..+...+..+-.++..++..+..|-.+-.+++-+...|+.++..... ...+.++.|..|.
T Consensus 3 k~~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~~~~~~~~~~~~~~~~~g~~NL~~LY 82 (107)
T PF06156_consen 3 KKELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQEEEEKEEKKTKKKLGEGRDNLARLY 82 (107)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccchHHHHHHHH
Q ss_pred HH
Q 002520 867 KQ 868 (913)
Q Consensus 867 kQ 868 (913)
.+
T Consensus 83 ~E 84 (107)
T PF06156_consen 83 QE 84 (107)
T ss_pred hc
No 489
>PRK14011 prefoldin subunit alpha; Provisional
Probab=54.80 E-value=23 Score=35.88 Aligned_cols=133 Identities=14% Similarity=0.192 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhhcC--C-CcHHHHHHHHHHHHHHHHHHHhhhc
Q 002520 709 SDERSARESLKSKRQEIDSVQSRINMMKNAISVDDIDGSIRNMEHRIAHET--L-PLKEEKQIIREIKQLKQRREQISSS 785 (913)
Q Consensus 709 eEIkrLReEInEKrKEIesLQSeLsKLrS~KSVEELQeEIkeLE~QIQheS--L-sLqEEKQlIrEISQLEkeRKdV~sn 785 (913)
.++.++-..++.+..+++.|+.++..++ ....+++.-|..|+ .+.... | ||..=-.+--.|..-.+-+=++-.-
T Consensus 3 ~elq~~~~~l~~~~~qie~L~~si~~L~--~a~~e~~~~ie~L~-~l~~~~eiLVPLg~s~yV~g~i~d~dkVlVdIGtG 79 (144)
T PRK14011 3 EELQNQFMALEVYNQQVQKLQEELSSID--MMKMELLKSIESME-GLKTSEEILIPLGPGAFLKAKIVDPDKAILGVGSD 79 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH-ccCCCCeEEEEcCCCcEEeEEecCCCeEEEEccCC
Q ss_pred ccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 786 IGEHDEVQLAFDQKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQE 857 (913)
Q Consensus 786 Is~kakIEqSLeEKenIqEQIKELKKEIDELReKIkkLekELEeLkkKIeEAqaELdELqeElrAaeEeRQE 857 (913)
+...-.+.+++. .+..+|+.+.+.++.+...++++...+..|. ..++.+.+++..+.+.
T Consensus 80 y~VEk~~~eA~~---~~~~ri~~l~~~~~~l~~~i~~~~~~~~~l~----------~~L~~k~~~~~~~~~~ 138 (144)
T PRK14011 80 IYLEKDVSEVIE---DFKKSVEELDKTKKEGNKKIEELNKEITKLR----------KELEKRAQAIEQRQAQ 138 (144)
T ss_pred eEEEecHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHhhh
No 490
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=54.76 E-value=1.4e+02 Score=35.75 Aligned_cols=80 Identities=13% Similarity=0.135 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 797 DQKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKR-LLGQFKAADEIRQEAYKHWQSLKKQAYDKNQH 875 (913)
Q Consensus 797 eEKenIqEQIKELKKEIDELReKIkkLekELEeLkkKIeEAqaELdE-LqeElrAaeEeRQEAyekIkELRkQ~DeLNsE 875 (913)
+-...+-.+++++++++..+...-+.+.++-+.|+++-..+...+.. +.....++.+++++.-..+..+...++.+...
T Consensus 59 DTlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~~~ 138 (472)
T TIGR03752 59 DTLRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQLQRR 138 (472)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred H
Q 002520 876 F 876 (913)
Q Consensus 876 F 876 (913)
+
T Consensus 139 l 139 (472)
T TIGR03752 139 L 139 (472)
T ss_pred H
No 491
>PTZ00440 reticulocyte binding protein 2-like protein; Provisional
Probab=54.75 E-value=9.3e+02 Score=35.20 Aligned_cols=242 Identities=14% Similarity=0.144 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 002520 664 NLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAA------ISDERSARESLKSKRQEIDSVQSRINMMKN 737 (913)
Q Consensus 664 eLKaKIdeLekEIEeL~kqRdEInaELqeLReERdELeSeLKkL------VeEIkrLReEInEKrKEIesLQSeLsKLrS 737 (913)
.|+.++..|...+..+.++...+...-..++.-..++...|+-. +-++-.|+.++.....+| .+|.+...
T Consensus 533 ~Lk~ei~~L~~~I~~~~~ki~~L~~~ek~~~~lk~eik~kik~IseK~~~lKkiI~Lk~~i~~~i~~I----deL~~~~p 608 (2722)
T PTZ00440 533 GLKNEIEGLIELIKYYLQSIETLIKDEKLKRSMKNDIKNKIKYIEENVDHIKDIISLNDEIDNIIQQI----EELINEAL 608 (2722)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH----HHHHccCC
Q ss_pred C------CCHHHHHHHHHHHHHHHhhcCC-CcHHHHH-HHHHHHHHHHHHHHhhhcccchhHHHHHHHhHH-----HHHH
Q 002520 738 A------ISVDDIDGSIRNMEHRIAHETL-PLKEEKQ-IIREIKQLKQRREQISSSIGEHDEVQLAFDQKD-----QIEE 804 (913)
Q Consensus 738 ~------KSVEELQeEIkeLE~QIQheSL-sLqEEKQ-lIrEISQLEkeRKdV~snIs~kakIEqSLeEKe-----nIqE 804 (913)
+ .....|+..|..+-..+-.+-| .|..|-- ++++-..+-.........-....++.....+.+ .+..
T Consensus 609 y~~~~fi~kK~~i~n~Iksi~~~~Y~gdi~~L~~els~fv~e~~~~i~e~~~~e~le~ll~~ik~ey~Ki~~mk~d~i~~ 688 (2722)
T PTZ00440 609 FNKEKFINEKNDLQEKVKYILNKFYKGDLQELLDELSHFLDDHKYLYHEAKSKEDLQTLLNTSKNEYEKLEFMKSDNIDN 688 (2722)
T ss_pred chHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHhhhccHHHHHHHHHHHHHHHHHHhhchHhhHHH
Q ss_pred HHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Q 002520 805 KMKFLRKEADSLRENVI--------KAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQA------- 869 (913)
Q Consensus 805 QIKELKKEIDELReKIk--------kLekELEeLkkKIeEAqaELdELqeElrAaeEeRQEAyekIkELRkQ~------- 869 (913)
-+..++.++..+..-.+ -+...+...-.++......|..-..++.+...++..-...+.+.+.++
T Consensus 689 ~l~~lk~el~~l~~lKk~I~k~~~~~i~~~m~~~ln~~~~k~~~L~~~i~~Y~~e~~~Le~YK~~I~e~kn~y~~~l~~~ 768 (2722)
T PTZ00440 689 IIKNLKKELQNLLSLKENIIKKQLNNIEQDISNSLNQYTIKYNDLKSSIEEYKEEEEKLEVYKHQIINRKNEFILHLYEN 768 (2722)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q ss_pred -------HHHHHHHHHHHHHHHHHHHhhhc--CCHHHHHHHHHHHHHhh
Q 002520 870 -------YDKNQHFWKYKDDTKQANDLASK--GDREALQHLCVNQVRSR 909 (913)
Q Consensus 870 -------DeLNsEFyq~Rr~l~kARdLAa~--~dv~eLqelc~~QVEkf 909 (913)
.....+|.+++..+..-+.=-++ ..+.+...=..++|+.|
T Consensus 769 d~~~~e~k~~y~e~~ehk~~i~~kE~eIs~~In~~ke~~~~i~~~l~~Y 817 (2722)
T PTZ00440 769 DKDLPDGKNTYEEFLQYKDTILNKENKISNDINILKENKKNNQDLLNSY 817 (2722)
T ss_pred cccchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
No 492
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=54.58 E-value=2.6e+02 Score=30.08 Aligned_cols=78 Identities=13% Similarity=0.188 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 798 QKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQH 875 (913)
Q Consensus 798 EKenIqEQIKELKKEIDELReKIkkLekELEeLkkKIeEAqaELdELqeElrAaeEeRQEAyekIkELRkQ~DeLNsE 875 (913)
++..|+.+..-+...|..-..+...|...+.--...-......-...+.+..++..++..+-..|..|..++..++..
T Consensus 106 rR~~LeAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq~q 183 (192)
T PF11180_consen 106 RRAQLEAQKAQLERLIAESEARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQLQRQVRQLQRQ 183 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 493
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=54.57 E-value=6e+02 Score=32.96 Aligned_cols=217 Identities=14% Similarity=0.157 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHH
Q 002520 663 ENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKNAISVD 742 (913)
Q Consensus 663 PeLKaKIdeLekEIEeL~kqRdEInaELqeLReERdELeSeLKkLVeEIkrLReEInEKrKEIesLQSeLsKLrS~KSVE 742 (913)
+.-.+.|=.-++-|+.-+..++.++.+...-.+..+.... -..-.++-+++..+.++.++ +.++.+....+ .+++.
T Consensus 560 ~~E~krilaRk~liE~rKe~~E~~~~~re~Eea~~q~~e~-~~~r~aE~kRl~ee~~Ere~--~R~l~E~e~i~-~k~~k 635 (988)
T KOG2072|consen 560 DKEHKRILARKSLIEKRKEDLEKQNVEREAEEAQEQAKEQ-RQAREAEEKRLIEEKKEREA--KRILREKEAIR-KKELK 635 (988)
T ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH-HHHHH
Q ss_pred HHHHHHHHHHHHHhhcC------C-CcHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHhHHHHHHHHHHHHHHHHH
Q 002520 743 DIDGSIRNMEHRIAHET------L-PLKEEKQIIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKFLRKEADS 815 (913)
Q Consensus 743 ELQeEIkeLE~QIQheS------L-sLqEEKQlIrEISQLEkeRKdV~snIs~kakIEqSLeEKenIqEQIKELKKEIDE 815 (913)
|...++..-+.....+. + +|.-+.=+.++|.+|.++++. ++.+++-..+.++-
T Consensus 636 e~~~~~~~te~~aK~~k~~d~ed~e~lD~d~i~~~q~eel~Ke~kE--------------------lq~rL~~q~KkiDh 695 (988)
T KOG2072|consen 636 ERLEQLKQTEVGAKGGKEKDLEDLEKLDADQIKARQIEELEKERKE--------------------LQSRLQYQEKKIDH 695 (988)
T ss_pred HHHHHHHHHHHHHhccccCChHHhhhcCHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHhhhhH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 002520 816 LRENVIKAEAATQAVKKLHREESEKLKRLLG-QFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKDDTKQANDLASKGD 894 (913)
Q Consensus 816 LReKIkkLekELEeLkkKIeEAqaELdELqe-ElrAaeEeRQEAyekIkELRkQ~DeLNsEFyq~Rr~l~kARdLAa~~d 894 (913)
+. ...-..+|-.+.+.+++...+=.++-. .-++.......++++-.+.++.+.....++..+...+...|+=.+..-
T Consensus 696 ~E--RA~R~EeiPL~e~~~~~~~~~d~e~~e~~Ek~Ri~~~~ae~e~~vk~k~~l~rm~~d~~~f~e~vk~~rqs~~~e~ 773 (988)
T KOG2072|consen 696 LE--RAKRLEEIPLIEKAYDERQEEDRELYEAREKQRIEAAIAERESAVKDKKRLSRMYDDRDKFKEHVKGERQSEYEEK 773 (988)
T ss_pred HH--HHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhHHHHHHH
Q ss_pred HHHHHHHHHHH
Q 002520 895 REALQHLCVNQ 905 (913)
Q Consensus 895 v~eLqelc~~Q 905 (913)
....++-..++
T Consensus 774 ~~~~ea~leae 784 (988)
T KOG2072|consen 774 LKQFEARLEAE 784 (988)
T ss_pred HHHHHHHHHHH
No 494
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=54.56 E-value=3.5e+02 Score=30.27 Aligned_cols=224 Identities=11% Similarity=0.121 Sum_probs=0.0
Q ss_pred ccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH-
Q 002520 655 VKVPRYDDENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARES-LKSKRQEIDSVQSRI- 732 (913)
Q Consensus 655 Vr~rRLdDPeLKaKIdeLekEIEeL~kqRdEInaELqeLReERdELeSeLKkLVeEIkrLReE-InEKrKEIesLQSeL- 732 (913)
++.++-.-..|+.....|.+.-..+.+.+..........-..+=.-...+..+++-+...... +...+.+++......
T Consensus 1 i~~rr~sl~el~~h~~~L~~~N~~L~~~IqdtE~st~~~Vr~lLqqy~~~~~~i~~le~~~~~~l~~ak~eLqe~eek~e 80 (258)
T PF15397_consen 1 IRNRRTSLQELKKHEDFLTKLNKELIKEIQDTEDSTALKVRKLLQQYDIYRTAIDILEYSNHKQLQQAKAELQEWEEKEE 80 (258)
T ss_pred CccHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHH
Q ss_pred ---HhccCCCCHHHHHHHHHHHHHHHhhcCCCcHHHHH-HHHHHHHHHHHHHHhhhcccchhHHHHHHHhHHHHHHHHHH
Q 002520 733 ---NMMKNAISVDDIDGSIRNMEHRIAHETLPLKEEKQ-IIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKF 808 (913)
Q Consensus 733 ---sKLrS~KSVEELQeEIkeLE~QIQheSLsLqEEKQ-lIrEISQLEkeRKdV~snIs~kakIEqSLeEKenIqEQIKE 808 (913)
+.+. +-+++|+++|......+..++-=-..|=- ..-.|..|.+++..++.. +...+.+--..
T Consensus 81 ~~l~~Lq--~ql~~l~akI~k~~~el~~L~TYkD~EYPvK~vqIa~L~rqlq~lk~~------------qqdEldel~e~ 146 (258)
T PF15397_consen 81 SKLSKLQ--QQLEQLDAKIQKTQEELNFLSTYKDHEYPVKAVQIANLVRQLQQLKDS------------QQDELDELNEM 146 (258)
T ss_pred hHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 809 LRKEADSLRENVIKAEAAT--QAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKDDTKQA 886 (913)
Q Consensus 809 LKKEIDELReKIkkLekEL--EeLkkKIeEAqaELdELqeElrAaeEeRQEAyekIkELRkQ~DeLNsEFyq~Rr~l~kA 886 (913)
++.++..+..++.....++ ....+-+......+-............+..-...+..+..+...+.++.-+-+......
T Consensus 147 ~~~el~~l~~~~q~k~~~il~~~~~k~~~~~~~~l~~~~~~N~~m~kei~~~re~i~el~e~I~~L~~eV~~L~~~~~~~ 226 (258)
T PF15397_consen 147 RQMELASLSRKIQEKKEEILSSAAEKTQSPMQPALLQRTLENQVMQKEIVQFREEIDELEEEIPQLRAEVEQLQAQAQDP 226 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch
Q ss_pred HHhhhc
Q 002520 887 NDLASK 892 (913)
Q Consensus 887 RdLAa~ 892 (913)
|+..+.
T Consensus 227 Re~iF~ 232 (258)
T PF15397_consen 227 REVIFA 232 (258)
T ss_pred HHHhhH
No 495
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=54.43 E-value=3e+02 Score=29.47 Aligned_cols=165 Identities=15% Similarity=0.212 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHH
Q 002520 663 ENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKNAISVD 742 (913)
Q Consensus 663 PeLKaKIdeLekEIEeL~kqRdEInaELqeLReERdELeSeLKkLVeEIkrLReEInEKrKEIesLQSeLsKLrS~KSVE 742 (913)
..+......++.+.+.+..........+...=..+....+.|+.-...++.++..-.....+|+.|+.++.+.+ ....+
T Consensus 25 ~q~~~~~~~i~~~r~~l~s~y~~q~~~Lq~qLlq~~k~~~~l~~eLq~l~~~~~~k~~qe~eI~~Le~e~~~~~-~e~~~ 103 (206)
T PF14988_consen 25 KQYIQQLEEIQRERQELVSRYAKQTSELQDQLLQKEKEQAKLQQELQALKEFRRLKEQQEREIQTLEEELEKMR-AEHAE 103 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q ss_pred HHHH-------HHHHHHHHHhhcCC-CcHHHHH--HHHHHHHHHHHHHHhhhcccchhHHHHHHHhHHHHHHHHHHHHHH
Q 002520 743 DIDG-------SIRNMEHRIAHETL-PLKEEKQ--IIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKFLRKE 812 (913)
Q Consensus 743 ELQe-------EIkeLE~QIQheSL-sLqEEKQ--lIrEISQLEkeRKdV~snIs~kakIEqSLeEKenIqEQIKELKKE 812 (913)
.++. +-..|+.++....+ .|.+... +.+.+..|+..-...-..+. ..|...-..++++
T Consensus 104 ~l~~~~~qfl~EK~~LEke~~e~~i~~l~e~a~~el~~k~~ale~~A~~~l~e~~------------~~i~~EN~~L~k~ 171 (206)
T PF14988_consen 104 KLQEAESQFLQEKARLEKEASELKILQLGERAHKELKKKAQALELAAKKSLDEFT------------RSIKRENQQLRKE 171 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHhHHHhhHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 813 ADSLRENVIKAEAATQAVKKLHREESEK 840 (913)
Q Consensus 813 IDELReKIkkLekELEeLkkKIeEAqaE 840 (913)
+..+-.+...+.+....|......+..+
T Consensus 172 L~~l~~e~~~L~~~~~~Le~qk~~L~~e 199 (206)
T PF14988_consen 172 LLQLIQEAQKLEARKSQLEKQKQQLQQE 199 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 496
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=54.32 E-value=36 Score=34.70 Aligned_cols=64 Identities=23% Similarity=0.319 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 763 KEEKQIIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLH 834 (913)
Q Consensus 763 qEEKQlIrEISQLEkeRKdV~snIs~kakIEqSLeEKenIqEQIKELKKEIDELReKIkkLekELEeLkkKI 834 (913)
.+++++++||.+|+++...+ .+++.+++-..++-++..+.++++++.+.....+..+...-...
T Consensus 40 ~~~~~l~~Ei~~l~~E~~~i--------S~qDeFAkwaKl~Rk~~kl~~el~~~~~~~~~~~~~~~~~~~~~ 103 (161)
T PF04420_consen 40 KEQRQLRKEILQLKRELNAI--------SAQDEFAKWAKLNRKLDKLEEELEKLNKSLSSEKSSFDKSLSKV 103 (161)
T ss_dssp HHHHHHHHHHHHHHHHHTTS---------TTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcC--------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 497
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=54.26 E-value=89 Score=38.34 Aligned_cols=70 Identities=13% Similarity=0.167 Sum_probs=0.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 792 VQLAFDQKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKH 861 (913)
Q Consensus 792 IEqSLeEKenIqEQIKELKKEIDELReKIkkLekELEeLkkKIeEAqaELdELqeElrAaeEeRQEAyek 861 (913)
+.+...-+......+.++....++|...|.++...+++++..+..++.+|..++....++.....+..+.
T Consensus 81 ~~e~~RI~~sVs~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~~ 150 (907)
T KOG2264|consen 81 LREQKRILASVSLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELRET 150 (907)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHhh
No 498
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=54.24 E-value=2.1e+02 Score=27.69 Aligned_cols=113 Identities=14% Similarity=0.137 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhhcccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
Q 002520 768 IIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESE-------- 839 (913)
Q Consensus 768 lIrEISQLEkeRKdV~snIs~kakIEqSLeEKenIqEQIKELKKEIDELReKIkkLekELEeLkkKIeEAqa-------- 839 (913)
+..++..+...+..+..++. .++......-+..++-..++..++.+...+..+-..++..-+.+.....
T Consensus 4 F~~~v~~I~~~i~~i~~~v~---~l~~l~~~~~t~~~~~~~~~~~l~~~~~~~~~~~~~ik~~lk~l~~~~~~~~~~~~s 80 (151)
T cd00179 4 FFEEVEEIRGNIDKISEDVE---ELQKLHSQLLTAPDADPELKQELESLVQEIKKLAKEIKGKLKELEESNEQNEALNGS 80 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCc
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 840 -KLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKDDT 883 (913)
Q Consensus 840 -ELdELqeElrAaeEeRQEAyekIkELRkQ~DeLNsEFyq~Rr~l 883 (913)
....-+.++..+......+...+......+.....+....+..+
T Consensus 81 ~~~r~~~~q~~~L~~~f~~~m~~fq~~Q~~~~~~~k~~i~Rq~~i 125 (151)
T cd00179 81 SVDRIRKTQHSGLSKKFVEVMTEFNKAQRKYRERYKERIQRQLEI 125 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 499
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=54.24 E-value=2.3e+02 Score=27.94 Aligned_cols=84 Identities=13% Similarity=0.150 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 801 QIEEKMKFLRKEADSLRENVIKAEA-----------ATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQA 869 (913)
Q Consensus 801 nIqEQIKELKKEIDELReKIkkLek-----------ELEeLkkKIeEAqaELdELqeElrAaeEeRQEAyekIkELRkQ~ 869 (913)
.+...++.+...++++.++|..+-. .++.+..-...++..+..++..++.+..+..+-|+++.....++
T Consensus 30 d~~~~l~kL~~~i~eld~~i~~~v~~~~~~LL~q~~~~~~~~~~l~~v~~~v~~L~~s~~RL~~eV~~Py~~~~~~~~~L 109 (132)
T PF10392_consen 30 DISTPLKKLNFDIQELDKRIRSQVTSNHEDLLSQASSIEELESVLQAVRSSVESLQSSYERLRSEVIEPYEKIQKLTSQL 109 (132)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHH
Q 002520 870 YDKNQHFWKYKDDTK 884 (913)
Q Consensus 870 DeLNsEFyq~Rr~l~ 884 (913)
..++..-.--|+..+
T Consensus 110 ~rl~~t~~LLR~~~r 124 (132)
T PF10392_consen 110 ERLHQTSDLLRSVSR 124 (132)
T ss_pred HHHHHHHHHHHHHHH
No 500
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=54.08 E-value=3.4e+02 Score=31.22 Aligned_cols=126 Identities=13% Similarity=0.203 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhcC------CCcHHHHH-HHHHHHHHHHHHHHhhhcccchhHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 002520 744 IDGSIRNMEHRIAHET------LPLKEEKQ-IIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKFLRKEADSL 816 (913)
Q Consensus 744 LQeEIkeLE~QIQheS------LsLqEEKQ-lIrEISQLEkeRKdV~snIs~kakIEqSLeEKenIqEQIKELKKEIDEL 816 (913)
++.--...+|.+.-+| +.+...-+ -+--|.|+...++.+..+.+ ++.-.|+ .-.+++-.-+..+
T Consensus 194 l~s~tDa~eW~lEvERVlPQLKVt~k~DakDWR~H~~QM~s~~~nIe~~~~---~~~~~Ld------klh~eit~~LEkI 264 (384)
T KOG0972|consen 194 LQSNTDAIEWKLEVERVLPQLKVTLKQDAKDWRLHLEQMNSMHKNIEQKVG---NVGPYLD------KLHKEITKALEKI 264 (384)
T ss_pred HhhcchHHHHHHHHHHhhhhheehhccccHHHHHHHHHHHHHHHHHHHhhc---chhHHHH------HHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002520 817 RENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWK 878 (913)
Q Consensus 817 ReKIkkLekELEeLkkKIeEAqaELdELqeElrAaeEeRQEAyekIkELRkQ~DeLNsEFyq 878 (913)
..+-+.+..+++.|-.++.++...+.+++.+.+++..-..+.-+.+.+...++..+.++.-+
T Consensus 265 ~SREK~lNnqL~~l~q~fr~a~~~lse~~e~y~q~~~gv~~rT~~L~eVm~e~E~~KqemEe 326 (384)
T KOG0972|consen 265 ASREKSLNNQLASLMQKFRRATDTLSELREKYKQASVGVSSRTETLDEVMDEIEQLKQEMEE 326 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH
Done!