Query 002520
Match_columns 913
No_of_seqs 158 out of 318
Neff 3.7
Searched_HMMs 29240
Date Tue Mar 26 16:30:47 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002520.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1239-1242//hhsearch_pdb/002520hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1i84_S Smooth muscle myosin he 1.0 1 1 78.2 10.0 47 663-709 860-906 (1184)
2 1i84_S Smooth muscle myosin he 1.0 1 1 74.6 10.5 16 506-521 704-719 (1184)
3 1c1g_A Tropomyosin; contractIl 1.0 1 1 58.6 30.7 63 664-726 3-65 (284)
4 1c1g_A Tropomyosin; contractIl 1.0 1 1 53.6 31.1 59 666-724 26-84 (284)
5 3na7_A HP0958; flagellar bioge 1.0 1 1 52.6 21.2 56 669-724 13-68 (256)
6 3na7_A HP0958; flagellar bioge 1.0 1 1 48.1 25.3 93 683-779 13-106 (256)
7 3vkg_A Dynein heavy chain, cyt 1.0 1 1 44.5 25.9 24 20-43 1015-1040(3245)
8 3vkg_A Dynein heavy chain, cyt 1.0 1 1 42.8 26.6 24 20-43 1036-1059(3245)
9 3oja_B Anopheles plasmodium-re 1.0 1 1 41.8 14.1 60 801-860 527-586 (597)
10 2dfs_A Myosin-5A; myosin-V, in 1.0 1 1 40.2 19.3 43 797-839 977-1019(1080)
No 1
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=1.00 E-value=1 Score=78.17 Aligned_cols=47 Identities=11% Similarity=0.175 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 68999999999899999999999999999999999999999999999
Q 002520 663 ENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAIS 709 (913)
Q Consensus 663 PeLKaKIeeLekEIEeLkkqREEInaELqeLReKRdELeSeLKkLVS 709 (913)
..++.++..++..+..+...+.++...+..++.++..+..++.....
T Consensus 860 ~~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~~~L~~e~~ 906 (1184)
T 1i84_S 860 QAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETE 906 (1184)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999999999999999
No 2
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=1.00 E-value=1 Score=74.60 Aligned_cols=16 Identities=50% Similarity=0.704 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHCCC
Q ss_conf 2589986432220269
Q 002520 506 LVCKEVLENARIQFTG 521 (913)
Q Consensus 506 ~~~~~~~~~~~~~~~~ 521 (913)
|-|-.|||+.||.-.|
T Consensus 704 Lr~~GvlE~iri~r~G 719 (1184)
T 1i84_S 704 LRCNGVLEGIRICRQG 719 (1184)
T ss_dssp HHHTTHHHHHHHHHHS
T ss_pred HHHCCCHHHHHHHHHC
T ss_conf 8506864777768635
No 3
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=1.00 E-value=1 Score=58.55 Aligned_cols=63 Identities=8% Similarity=0.196 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 899999999989999999999999999999999999999999999999999999999999899
Q 002520 664 NLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEID 726 (913)
Q Consensus 664 eLKaKIeeLekEIEeLkkqREEInaELqeLReKRdELeSeLKkLVSEIkrLReEIkEKrKEIe 726 (913)
.|++++..+..+++.+...+..+...+..++.....+...+..+...+..++..+.....++.
T Consensus 3 ~~~~~~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (284)
T 1c1g_A 3 AIKKKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALK 65 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 789999998876888999999999999999988988899999999999999999999999999
No 4
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=1.00 E-value=1 Score=53.60 Aligned_cols=59 Identities=14% Similarity=0.218 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999899999999999999999999999999999999999999999999999998
Q 002520 666 REQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQE 724 (913)
Q Consensus 666 KaKIeeLekEIEeLkkqREEInaELqeLReKRdELeSeLKkLVSEIkrLReEIkEKrKE 724 (913)
..++..+...+..+...+..+...+..++..+..+...+..+...+..+...+.....+
T Consensus 26 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (284)
T 1c1g_A 26 EADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKDAQEKLELAEKKATDAEAD 84 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999889888999999999999999999999999999999999999989877988
No 5
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=1.00 E-value=1 Score=52.56 Aligned_cols=56 Identities=9% Similarity=0.087 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999899999999999999999999999999999999999999999999999998
Q 002520 669 IKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQE 724 (913)
Q Consensus 669 IeeLekEIEeLkkqREEInaELqeLReKRdELeSeLKkLVSEIkrLReEIkEKrKE 724 (913)
+..++.++..+...+..+-.++..+......+...+..+...+..+..++..+..+
T Consensus 13 LQ~lD~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~ 68 (256)
T 3na7_A 13 ISHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQT 68 (256)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999987589999999999999999999999999999999999978
No 6
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=1.00 E-value=1 Score=48.06 Aligned_cols=93 Identities=13% Similarity=0.260 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 99999999999999999999999999999999999999999899999999740279998889999999999873067892
Q 002520 683 RDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKNAISVDDIDGSIRNMEHRIAHETLPL 762 (913)
Q Consensus 683 REEInaELqeLReKRdELeSeLKkLVSEIkrLReEIkEKrKEIesLQSeLsKlrSakSVEEIQeEIkkLEeKIQtlSLsL 762 (913)
+..++..+..++..+..+..+|..+..++..++..+.....++..+...+.... ..++++..+|.+...++...+ -
T Consensus 13 LQ~lD~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e--~~i~~~~~ri~~~~~~l~~v~--~ 88 (256)
T 3na7_A 13 ISHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNE--QTLQDTNAKIASIQKKMSEIK--S 88 (256)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHCS--S
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHCCC--C
T ss_conf 999999999999999875899999999999999999999999999999999999--789999999999999987258--9
Q ss_pred HHHHH-HHHHHHHHHHHH
Q ss_conf 89999-999999999999
Q 002520 763 KEEKQ-IIREIKQLKQRR 779 (913)
Q Consensus 763 qEEKQ-lIKEISqLEkeR 779 (913)
..|-+ +.++|..++..+
T Consensus 89 ~kE~~aL~kEie~~~~~i 106 (256)
T 3na7_A 89 ERELRSLNIEEDIAKERS 106 (256)
T ss_dssp SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999
No 7
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=1.00 E-value=1 Score=44.45 Aligned_cols=24 Identities=33% Similarity=0.444 Sum_probs=11.2
Q ss_pred CCCCCCCCCCCC--EEEEEECCCCCC
Q ss_conf 999987544561--279996057778
Q 002520 20 DLPNGNAIADSS--CVFVEVSGNDVG 43 (913)
Q Consensus 20 ~~~~~~~~~~~~--~~~~~~~~~~~~ 43 (913)
-||||.-|.=+. ..+.||.--.+.
T Consensus 1015 tL~nGErI~l~~~~~liFEv~dL~~A 1040 (3245)
T 3vkg_A 1015 TLPNGERLALPNNVRVMFEVQDLKYA 1040 (3245)
T ss_dssp CCTTSCCEECCTTEEEEEEESCCTTC
T ss_pred ECCCCCEEECCCCCEEEEEECCCCCC
T ss_conf 35898844369987799981520216
No 8
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=1.00 E-value=1 Score=42.83 Aligned_cols=24 Identities=25% Similarity=0.179 Sum_probs=13.5
Q ss_pred CCCCCCCCCCCCEEEEEECCCCCC
Q ss_conf 999987544561279996057778
Q 002520 20 DLPNGNAIADSSCVFVEVSGNDVG 43 (913)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~ 43 (913)
||-+.-.-.-|.|-.|-++..++|
T Consensus 1036 dL~~ASPATVSRcGmVy~~~~~l~ 1059 (3245)
T 3vkg_A 1036 DLKYATLATISRCGMVWFSEEILT 1059 (3245)
T ss_dssp CCTTCCHHHHHTSEEEECCTTSSC
T ss_pred CCCCCCHHHHEEEEEEEECCCCCC
T ss_conf 202167232100258997444357
No 9
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=1.00 E-value=1 Score=41.80 Aligned_cols=60 Identities=12% Similarity=0.084 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999999999999999999999999999999999999999999999
Q 002520 801 QIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYK 860 (913)
Q Consensus 801 sIqEQIKELKKEIDELReKIeeLekEIEeLkkKIeEAqaELdELqeE~eAaeEkRQEAye 860 (913)
.++.++++++++++.+++++..++..++..+.++.+.+.++..+..+.....++.++.++
T Consensus 527 ~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~~~~~ 586 (597)
T 3oja_B 527 ARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKNRNPD 586 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 887765542011136776648899987310147899888899999999999987437976
No 10
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=1.00 E-value=1 Score=40.17 Aligned_cols=43 Identities=9% Similarity=0.262 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 7699999999999999999999999999999999999999999
Q 002520 797 DQKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESE 839 (913)
Q Consensus 797 eeKesIqEQIKELKKEIDELReKIeeLekEIEeLkkKIeEAqa 839 (913)
.++...+++++.+.++++++++.+.++.++.+.+..++.....
T Consensus 977 ~e~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~ 1019 (1080)
T 2dfs_A 977 EEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKH 1019 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999999999999999999999999999
Done!