BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002521
(913 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3KX2|B Chain B, Crystal Structure Of Prp43p In Complex With Adp
pdb|3KX2|A Chain A, Crystal Structure Of Prp43p In Complex With Adp
Length = 767
Score = 288 bits (736), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 203/678 (29%), Positives = 324/678 (47%), Gaps = 90/678 (13%)
Query: 236 SPEGNKMLDFRKSLPSFKEKERLLQAIARNQVIVISGETGCGKTTQLPQYILESEIESGR 295
+P+ +L R+ LP +++ L+ NQ++V GETG GKTTQ+PQ++L E+
Sbjct: 80 TPKYVDILKIRRELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLE 139
Query: 296 GAFCNIICTQPRRISAMAVSERVSAERGEPLGETVGYKVRLEGMKGKNTHLLFCTSGILL 355
+ CTQPRR++AM+V++RV+ E LGE VGY +R E T L + T G+LL
Sbjct: 140 N--TQVACTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFENKTSNKTILKYMTDGMLL 197
Query: 356 RRLLSDHNLNGVTHVFVDEIHERGMNEDFLLIVXXXXXXXXXXXXXXXMSATLNAELFSN 415
R + DH+L+ + + +DE HER + D L+ + MSATL+AE F
Sbjct: 198 REAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQR 257
Query: 416 YFGGAPTIHIPGFTYPVQAH----FLEDVLEMTGYKLTSLNQVDDYGQEKLWKTQRQLLP 471
YF AP + +PG TYPV+ + F D L+ + ++ ++ G L+ T
Sbjct: 258 YFNDAPLLAVPGRTYPVELYYTPEFQRDYLDSAIRTVLQIHATEEAGDILLFLTGED--- 314
Query: 472 RKRKNQITALVEDALHKSNFENYSSRARDSLASWTADCIGFNLIEAVLCHICRKECPGAV 531
+EDA+ K + E + R+E G +
Sbjct: 315 ---------EIEDAVRKISLEG--------------------------DQLVREEGCGPL 339
Query: 532 LVFMTGWEDISCLRDQLKSHPLLGDPNRVLLLTCHGSMPTSEQKFIFEKAPPNI-----R 586
V+ PL +GS+P +Q+ IFE AP + R
Sbjct: 340 SVY-----------------PL------------YGSLPPHQQQRIFEPAPESHNGRPGR 370
Query: 587 KIVLATNMAEASITINDIVFVVDCGKAKETTYDALNNTPCLLPSWIXXXXXXXXXXXXXX 646
K+V++TN+AE S+TI+ IV+VVD G +K+ Y+ LL S I
Sbjct: 371 KVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGR 430
Query: 647 VQPGQCYHLYPRCVYEA-FAEYQLPELLRTPLNSLCLQIKSLQVGSIGEFLSAALQPPEP 705
+PG+C+ LY ++ E PE+LR+ L+S L++K L + + F + PP P
Sbjct: 431 TRPGKCFRLYTEEAFQKELIEQSYPEILRSNLSSTVLELKKLGIDDLVHF--DFMDPPAP 488
Query: 706 LAVQNAVDFLKRIGALDEKENLTNLGKFLSMLPVDPKLGKMLVMGAIFRCFDPVLTIVSG 765
+ A++ L + LD++ NLT LG+ S P+DP L ML+ F+C +LTIV+
Sbjct: 489 ETMMRALEELNYLACLDDEGNLTPLGRLASQFPLDPMLAVMLIGSFEFQCSQEILTIVAM 548
Query: 766 LSVRDPFLLPQEKKNLAEIAKSRFSAKDYSDHMALVRAYEGWKDAEREGSG-YEYCWRNF 824
LSV + F+ P + K A+ AK+ F+ D DH+ L+ Y +K E G +++C ++
Sbjct: 549 LSVPNVFIRPTKDKKRADDAKNIFAHPD-GDHITLLNVYHAFKSDEAYEYGIHKWCRDHY 607
Query: 825 LSAQTLQAIHSLRKQFTFILR--DAGLLDEDGGNNKLSHNQSLVRAVICSGLFPGITSVV 882
L+ ++L A ++R Q ++ + L D + K N +R + SG F +
Sbjct: 608 LNYRSLSAADNIRSQLERLMNRYNLELNTTDYESPKYFDN---IRKALASGFFMQVAK-- 662
Query: 883 HRETSMSFKTMDDGQVFL 900
R + + T+ D Q L
Sbjct: 663 KRSGAKGYITVKDNQDVL 680
>pdb|2XAU|A Chain A, Crystal Structure Of The Prp43p Deah-Box Rna Helicase In
Complex With Adp
pdb|2XAU|B Chain B, Crystal Structure Of The Prp43p Deah-Box Rna Helicase In
Complex With Adp
Length = 773
Score = 288 bits (736), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 203/678 (29%), Positives = 324/678 (47%), Gaps = 90/678 (13%)
Query: 236 SPEGNKMLDFRKSLPSFKEKERLLQAIARNQVIVISGETGCGKTTQLPQYILESEIESGR 295
+P+ +L R+ LP +++ L+ NQ++V GETG GKTTQ+PQ++L E+
Sbjct: 80 TPKYVDILKIRRELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLE 139
Query: 296 GAFCNIICTQPRRISAMAVSERVSAERGEPLGETVGYKVRLEGMKGKNTHLLFCTSGILL 355
+ CTQPRR++AM+V++RV+ E LGE VGY +R E T L + T G+LL
Sbjct: 140 N--TQVACTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFENKTSNKTILKYMTDGMLL 197
Query: 356 RRLLSDHNLNGVTHVFVDEIHERGMNEDFLLIVXXXXXXXXXXXXXXXMSATLNAELFSN 415
R + DH+L+ + + +DE HER + D L+ + MSATL+AE F
Sbjct: 198 REAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQR 257
Query: 416 YFGGAPTIHIPGFTYPVQAH----FLEDVLEMTGYKLTSLNQVDDYGQEKLWKTQRQLLP 471
YF AP + +PG TYPV+ + F D L+ + ++ ++ G L+ T
Sbjct: 258 YFNDAPLLAVPGRTYPVELYYTPEFQRDYLDSAIRTVLQIHATEEAGDILLFLTGED--- 314
Query: 472 RKRKNQITALVEDALHKSNFENYSSRARDSLASWTADCIGFNLIEAVLCHICRKECPGAV 531
+EDA+ K + E + R+E G +
Sbjct: 315 ---------EIEDAVRKISLEG--------------------------DQLVREEGCGPL 339
Query: 532 LVFMTGWEDISCLRDQLKSHPLLGDPNRVLLLTCHGSMPTSEQKFIFEKAPPNI-----R 586
V+ PL +GS+P +Q+ IFE AP + R
Sbjct: 340 SVY-----------------PL------------YGSLPPHQQQRIFEPAPESHNGRPGR 370
Query: 587 KIVLATNMAEASITINDIVFVVDCGKAKETTYDALNNTPCLLPSWIXXXXXXXXXXXXXX 646
K+V++TN+AE S+TI+ IV+VVD G +K+ Y+ LL S I
Sbjct: 371 KVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGR 430
Query: 647 VQPGQCYHLYPRCVYEA-FAEYQLPELLRTPLNSLCLQIKSLQVGSIGEFLSAALQPPEP 705
+PG+C+ LY ++ E PE+LR+ L+S L++K L + + F + PP P
Sbjct: 431 TRPGKCFRLYTEEAFQKELIEQSYPEILRSNLSSTVLELKKLGIDDLVHF--DFMDPPAP 488
Query: 706 LAVQNAVDFLKRIGALDEKENLTNLGKFLSMLPVDPKLGKMLVMGAIFRCFDPVLTIVSG 765
+ A++ L + LD++ NLT LG+ S P+DP L ML+ F+C +LTIV+
Sbjct: 489 ETMMRALEELNYLACLDDEGNLTPLGRLASQFPLDPMLAVMLIGSFEFQCSQEILTIVAM 548
Query: 766 LSVRDPFLLPQEKKNLAEIAKSRFSAKDYSDHMALVRAYEGWKDAEREGSG-YEYCWRNF 824
LSV + F+ P + K A+ AK+ F+ D DH+ L+ Y +K E G +++C ++
Sbjct: 549 LSVPNVFIRPTKDKKRADDAKNIFAHPD-GDHITLLNVYHAFKSDEAYEYGIHKWCRDHY 607
Query: 825 LSAQTLQAIHSLRKQFTFILR--DAGLLDEDGGNNKLSHNQSLVRAVICSGLFPGITSVV 882
L+ ++L A ++R Q ++ + L D + K N +R + SG F +
Sbjct: 608 LNYRSLSAADNIRSQLERLMNRYNLELNTTDYESPKYFDN---IRKALASGFFMQVAK-- 662
Query: 883 HRETSMSFKTMDDGQVFL 900
R + + T+ D Q L
Sbjct: 663 KRSGAKGYITVKDNQDVL 680
>pdb|3LLM|A Chain A, Crystal Structure Analysis Of A Rna Helicase
pdb|3LLM|B Chain B, Crystal Structure Analysis Of A Rna Helicase
Length = 235
Score = 168 bits (426), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 84/185 (45%), Positives = 120/185 (64%), Gaps = 3/185 (1%)
Query: 242 MLDFRKSLPSFKEKERLLQAIARNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNI 301
+L R+ LP K + +L+AI++N V++I G TGCGKTTQ+PQ+IL+ I++ R A CNI
Sbjct: 53 ILQERELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNI 112
Query: 302 ICTQPRRISAMAVSERVSAERGEPLGETVGYKVRLEGMKGK-NTHLLFCTSGILLRRLLS 360
+ TQPRRISA++V+ERV+ ERGE G++ GY VR E + + + + FCT G+LLR+L
Sbjct: 113 VVTQPRRISAVSVAERVAFERGEEPGKSCGYSVRFESILPRPHASIXFCTVGVLLRKL-- 170
Query: 361 DHNLNGVTHVFVDEIHERGMNEDFLLIVXXXXXXXXXXXXXXXMSATLNAELFSNYFGGA 420
+ + G++HV VDEIHER +N DFLL+V SAT++ F YF
Sbjct: 171 EAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRIVLXSATIDTSXFCEYFFNC 230
Query: 421 PTIHI 425
P I +
Sbjct: 231 PIIEV 235
>pdb|3I4U|A Chain A, Crystal Structure Analysis Of A Helicase Associated Domain
Length = 270
Score = 97.8 bits (242), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 64/191 (33%), Positives = 106/191 (55%), Gaps = 16/191 (8%)
Query: 710 NAVDFLKRIGALDEKENLTNLGKFLSMLPVDPKLGKMLVMGAIFRCFDPVLTIVSGLSVR 769
A++ L +GALD++ LT LG+ ++ P++P L KML+M C + +LTIVS LSV+
Sbjct: 22 TAMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQ 81
Query: 770 DPFLLPQEKKNLAEIAKSRFSAKDYSDHMALVRAYEGWKDAEREGSGYEYCWRNFLSAQT 829
+ F P++K+ LA+ K++F + DH+ L+ Y WK+ + +C+ NF+ A++
Sbjct: 82 NVFYRPKDKQALADQKKAKFHQTE-GDHLTLLAVYNSWKNNKFSNP---WCYENFIQARS 137
Query: 830 LQAIHSLRKQFTFILRDAGLLDEDGGNNKLSHNQSLVRA--VICSGLFPGITSVVHRETS 887
L+ +RKQ I+ D LD +S +S VR ICSG F + ++
Sbjct: 138 LRRAQDIRKQMLGIM-DRHKLD------VVSCGKSTVRVQKAICSGFF---RNAAKKDPQ 187
Query: 888 MSFKTMDDGQV 898
++T+ D QV
Sbjct: 188 EGYRTLIDQQV 198
>pdb|3BER|A Chain A, Human Dead-Box Rna-Helicase Ddx47, Conserved Domain I In
Complex With Amp
Length = 249
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 59/129 (45%), Gaps = 20/129 (15%)
Query: 268 IVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVSAERGEPLG 327
I+ ETG GKT IL + +E+ + F ++ P R A +SE+ E LG
Sbjct: 83 IIGLAETGSGKTGAFALPILNALLETPQRLFALVLT--PTRELAFQISEQF-----EALG 135
Query: 328 ETVGYK--VRLEGMK--------GKNTHLLFCTSGILLRRL--LSDHNLNGVTHVFVDEI 375
++G + V + G+ K H++ T G L+ L NL + ++ +DE
Sbjct: 136 SSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDE- 194
Query: 376 HERGMNEDF 384
+R +N DF
Sbjct: 195 ADRILNMDF 203
>pdb|4B3F|X Chain X, Crystal Structure Of 1ghmbp2 Helicase
Length = 646
Score = 34.7 bits (78), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 42/77 (54%), Gaps = 5/77 (6%)
Query: 243 LDFRKSLPSFKEKERLLQAIARNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNII 302
L F + +KE +L A+++ ++ +I G G GKTT + + IL++ ++ G ++
Sbjct: 183 LTFFNTCLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQA-VKQG----LKVL 237
Query: 303 CTQPRRISAMAVSERVS 319
C P I+ + ER++
Sbjct: 238 CCAPSNIAVDNLVERLA 254
>pdb|4B3G|A Chain A, Crystal Structure Of Ighmbp2 Helicase In Complex With Rna
pdb|4B3G|B Chain B, Crystal Structure Of Ighmbp2 Helicase In Complex With Rna
Length = 646
Score = 34.7 bits (78), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 42/77 (54%), Gaps = 5/77 (6%)
Query: 243 LDFRKSLPSFKEKERLLQAIARNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNII 302
L F + +KE +L A+++ ++ +I G G GKTT + + IL++ ++ G ++
Sbjct: 183 LTFFNTCLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQA-VKQG----LKVL 237
Query: 303 CTQPRRISAMAVSERVS 319
C P I+ + ER++
Sbjct: 238 CCAPSNIAVDNLVERLA 254
>pdb|2GZA|A Chain A, Crystal Structure Of The Virb11 Atpase From The Brucella
Suis Type Iv Secretion System In Complex With Sulphate
pdb|2GZA|B Chain B, Crystal Structure Of The Virb11 Atpase From The Brucella
Suis Type Iv Secretion System In Complex With Sulphate
pdb|2GZA|C Chain C, Crystal Structure Of The Virb11 Atpase From The Brucella
Suis Type Iv Secretion System In Complex With Sulphate
Length = 361
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 5/73 (6%)
Query: 213 SVMEKVLQRRSLQMRNMQRAWQE-SPEGNKMLDFRKSLPSFKEK----ERLLQAIARNQV 267
++ + RR+L+ Q ++ P + F + L + KE L +A+ +V
Sbjct: 118 TIRKPSFTRRTLEDYAQQGFFKHVRPMSKSLTPFEQELLALKEAGDYMSFLRRAVQLERV 177
Query: 268 IVISGETGCGKTT 280
IV++GETG GKTT
Sbjct: 178 IVVAGETGSGKTT 190
>pdb|2DF4|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab
Complexed With Mn2+
pdb|2DQN|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab
Complexed With Asn
pdb|2G5H|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab
pdb|2G5I|A Chain A, Structure Of Trna-dependent Amidotransferase Gatcab
Complexed With Adp-alf4
pdb|3IP4|A Chain A, The High Resolution Structure Of Gatcab
pdb|2F2A|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab
Complexed With Gln
Length = 485
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%)
Query: 684 IKSLQVGSIGEFLSAALQPPEPLAVQNAVDFLKRIGALDEKENLTN 729
IK L+V E+L + AVQNAV+ LK +GA+ E+ +L N
Sbjct: 256 IKGLKVALPKEYLGEGVADDVKEAVQNAVETLKSLGAVVEEVSLPN 301
>pdb|3G9X|A Chain A, Structure Of Haloalkane Dehalogenase Dhaa14 Mutant I135f
From Rhodococcus Rhodochrous
Length = 299
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%)
Query: 747 LVMGAIFRCFDPVLTIVSGLSVRDPFLLPQEKKNLAEIAKSRFSAKDYSDHMALVRAYEG 806
+ GA+ +C LT V R+PFL P +++ L A + ++ +ALV AY
Sbjct: 168 FIEGALPKCVVRPLTEVEMDHYREPFLKPVDREPLWRFPNELPIAGEPANIVALVEAYMN 227
Query: 807 W 807
W
Sbjct: 228 W 228
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 30.8 bits (68), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 43/95 (45%), Gaps = 11/95 (11%)
Query: 460 EKLWKTQRQL--LPRKRKNQITALVEDALHKSNFENYSSRARDSLASWTADCIGFNLIEA 517
E LW T +L LP +Q+ L E L ++ ++ R DSL T +G+N +++
Sbjct: 88 ETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQS 147
Query: 518 VLCHICRKECPGAVLVFMTGWEDISCLRDQLKSHP 552
+ P V +T +++ +QLK P
Sbjct: 148 L---------PKGVFDKLTSLKELRLYNNQLKRVP 173
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 30.4 bits (67), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 6/45 (13%)
Query: 262 IARNQVIVISGETGCGKTTQLPQYILESE------IESGRGAFCN 300
I R Q++ ++G TG GKT+ L + E E SGR +FC+
Sbjct: 61 IERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCS 105
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 30.4 bits (67), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 6/45 (13%)
Query: 262 IARNQVIVISGETGCGKTTQLPQYILESE------IESGRGAFCN 300
I R Q++ ++G TG GKT+ L + E E SGR +FC+
Sbjct: 61 IERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCS 105
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 30.4 bits (67), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 6/45 (13%)
Query: 262 IARNQVIVISGETGCGKTTQLPQYILESE------IESGRGAFCN 300
I R Q++ ++G TG GKT+ L + E E SGR +FC+
Sbjct: 31 IERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCS 75
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 30.4 bits (67), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 6/45 (13%)
Query: 262 IARNQVIVISGETGCGKTTQLPQYILESE------IESGRGAFCN 300
I R Q++ ++G TG GKT+ L + E E SGR +FC+
Sbjct: 61 IERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCS 105
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 30.4 bits (67), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 6/45 (13%)
Query: 262 IARNQVIVISGETGCGKTTQLPQYILESE------IESGRGAFCN 300
I R Q++ ++G TG GKT+ L + E E SGR +FC+
Sbjct: 43 IERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCS 87
>pdb|2BBO|A Chain A, Human Nbd1 With Phe508
Length = 291
Score = 30.0 bits (66), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 6/45 (13%)
Query: 262 IARNQVIVISGETGCGKTTQLPQYILESE------IESGRGAFCN 300
I R Q++ ++G TG GKT+ L + E E SGR +FC+
Sbjct: 61 IERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCS 105
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 30.0 bits (66), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 6/45 (13%)
Query: 262 IARNQVIVISGETGCGKTTQLPQYILESE------IESGRGAFCN 300
I R Q++ ++G TG GKT+ L + E E SGR +FC+
Sbjct: 31 IERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCS 75
>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain
With Atp
Length = 290
Score = 30.0 bits (66), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 6/45 (13%)
Query: 262 IARNQVIVISGETGCGKTTQLPQYILESE------IESGRGAFCN 300
I R Q++ ++G TG GKT+ L + E E SGR +FC+
Sbjct: 61 IERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCS 105
>pdb|2QR6|A Chain A, Crystal Structure Of Imp DehydrogenaseGMP REDUCTASE-Like
Protein (Np_599840.1) From Corynebacterium Glutamicum
Atcc 13032 Kitasato At 1.50 A Resolution
Length = 393
Score = 29.6 bits (65), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 41/96 (42%), Gaps = 5/96 (5%)
Query: 662 EAFAEYQLPELLRTPLNSLCLQIKSLQVGSIGEFLSAALQPPE-----PLAVQNAVDFLK 716
+A A L EL PL++ L + QV GE ++ + P P+ ++ D L
Sbjct: 124 QAAATRTLQELHAAPLDTELLSERIAQVRDSGEIVAVRVSPQNVREIAPIVIKAGADLLV 183
Query: 717 RIGALDEKENLTNLGKFLSMLPVDPKLGKMLVMGAI 752
G L E++ G+ L++ L ++ G +
Sbjct: 184 IQGTLISAEHVNTGGEALNLKEFIGSLDVPVIAGGV 219
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,037,253
Number of Sequences: 62578
Number of extensions: 973573
Number of successful extensions: 2297
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 2271
Number of HSP's gapped (non-prelim): 24
length of query: 913
length of database: 14,973,337
effective HSP length: 108
effective length of query: 805
effective length of database: 8,214,913
effective search space: 6613004965
effective search space used: 6613004965
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)