Query 002521
Match_columns 913
No_of_seqs 589 out of 3342
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 01:39:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002521.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002521hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0920 ATP-dependent RNA heli 100.0 9E-130 2E-134 1150.6 51.8 775 75-910 17-808 (924)
2 KOG0922 DEAH-box RNA helicase 100.0 5E-120 1E-124 1015.6 49.8 591 236-911 37-631 (674)
3 KOG0924 mRNA splicing factor A 100.0 8E-116 2E-120 965.6 44.2 584 240-909 346-934 (1042)
4 KOG0923 mRNA splicing factor A 100.0 7E-115 2E-119 958.3 43.9 588 240-911 255-847 (902)
5 KOG0925 mRNA splicing factor A 100.0 2E-109 5E-114 887.8 42.0 592 234-911 31-632 (699)
6 PRK11131 ATP-dependent RNA hel 100.0 1E-103 3E-108 964.5 59.7 588 242-911 66-661 (1294)
7 TIGR01967 DEAH_box_HrpA ATP-de 100.0 4E-100 9E-105 937.3 60.4 588 240-910 57-650 (1283)
8 COG1643 HrpA HrpA-like helicas 100.0 5.4E-99 1E-103 895.7 50.6 593 235-905 35-657 (845)
9 KOG0926 DEAH-box RNA helicase 100.0 9.4E-96 2E-100 818.2 37.8 595 239-910 245-985 (1172)
10 TIGR01970 DEAH_box_HrpB ATP-de 100.0 5.2E-82 1.1E-86 763.6 52.1 538 249-909 1-539 (819)
11 PRK11664 ATP-dependent RNA hel 100.0 1.4E-80 3.1E-85 753.1 52.7 527 248-909 3-532 (812)
12 KOG0921 Dosage compensation co 100.0 1.8E-73 3.9E-78 644.8 26.2 661 235-912 363-1031(1282)
13 PHA02653 RNA helicase NPH-II; 100.0 1.3E-55 2.7E-60 522.5 35.8 401 253-752 167-595 (675)
14 PRK01172 ski2-like helicase; P 100.0 1.2E-40 2.5E-45 405.6 44.8 436 248-764 20-505 (674)
15 PRK02362 ski2-like helicase; P 100.0 4.4E-40 9.5E-45 403.4 42.6 439 250-764 23-529 (737)
16 KOG0330 ATP-dependent RNA heli 100.0 7.8E-42 1.7E-46 360.6 20.4 326 239-662 73-410 (476)
17 KOG0331 ATP-dependent RNA heli 100.0 1.8E-39 3.8E-44 365.4 26.1 326 246-663 110-452 (519)
18 PRK11776 ATP-dependent RNA hel 100.0 1.3E-38 2.8E-43 371.8 30.1 312 251-662 27-352 (460)
19 PRK04837 ATP-dependent RNA hel 100.0 3.1E-38 6.8E-43 364.6 31.6 318 245-662 26-365 (423)
20 PRK00254 ski2-like helicase; P 100.0 7.6E-37 1.7E-41 373.9 42.3 445 239-765 12-522 (720)
21 PRK11192 ATP-dependent RNA hel 100.0 6.3E-38 1.4E-42 363.6 30.9 321 250-664 23-357 (434)
22 PRK10590 ATP-dependent RNA hel 100.0 1.1E-37 2.4E-42 362.8 32.1 314 252-662 25-355 (456)
23 PTZ00110 helicase; Provisional 100.0 1.1E-37 2.3E-42 368.5 31.0 320 252-662 154-487 (545)
24 PRK11634 ATP-dependent RNA hel 100.0 2.3E-37 5.1E-42 368.8 33.4 310 250-661 28-354 (629)
25 PRK04537 ATP-dependent RNA hel 100.0 4.5E-37 9.8E-42 364.4 33.5 311 252-661 33-366 (572)
26 COG0513 SrmB Superfamily II DN 100.0 3.1E-37 6.7E-42 361.3 29.4 320 246-659 48-380 (513)
27 PRK01297 ATP-dependent RNA hel 100.0 5.5E-37 1.2E-41 359.1 31.1 327 236-660 95-443 (475)
28 PLN00206 DEAD-box ATP-dependen 100.0 2E-36 4.4E-41 356.6 31.1 310 252-662 145-478 (518)
29 PTZ00424 helicase 45; Provisio 100.0 3.8E-36 8.2E-41 345.5 29.2 314 252-664 52-379 (401)
30 KOG0333 U5 snRNP-like RNA heli 100.0 3.5E-36 7.5E-41 327.7 22.1 336 226-662 240-627 (673)
31 TIGR03817 DECH_helic helicase/ 100.0 6.6E-36 1.4E-40 363.0 26.7 328 250-658 36-385 (742)
32 KOG0342 ATP-dependent RNA heli 100.0 1.4E-35 3E-40 322.4 25.9 319 247-660 101-438 (543)
33 COG1202 Superfamily II helicas 100.0 6.8E-35 1.5E-39 319.9 30.8 459 234-789 200-702 (830)
34 KOG0338 ATP-dependent RNA heli 100.0 1.3E-35 2.8E-40 321.8 21.4 336 235-662 189-536 (691)
35 KOG0345 ATP-dependent RNA heli 100.0 5.6E-35 1.2E-39 315.3 25.5 328 251-676 29-384 (567)
36 TIGR00614 recQ_fam ATP-depende 100.0 2.9E-34 6.2E-39 335.2 31.1 308 252-663 13-337 (470)
37 KOG0340 ATP-dependent RNA heli 100.0 7.5E-35 1.6E-39 304.5 20.7 319 246-662 28-364 (442)
38 COG1204 Superfamily II helicas 100.0 5.8E-34 1.3E-38 342.3 30.7 420 253-752 35-526 (766)
39 PRK11057 ATP-dependent DNA hel 100.0 5.2E-34 1.1E-38 341.6 28.2 304 252-663 27-347 (607)
40 PRK13767 ATP-dependent helicas 100.0 6.9E-34 1.5E-38 351.9 30.1 392 251-720 33-477 (876)
41 PLN03137 ATP-dependent DNA hel 100.0 6E-34 1.3E-38 343.0 28.0 308 250-663 460-791 (1195)
42 TIGR00580 mfd transcription-re 100.0 1.7E-33 3.6E-38 344.9 28.4 316 233-659 434-770 (926)
43 KOG0343 RNA Helicase [RNA proc 100.0 1.1E-33 2.5E-38 309.1 23.8 323 249-663 90-426 (758)
44 KOG0328 Predicted ATP-dependen 100.0 1.6E-33 3.5E-38 285.8 22.1 331 239-665 39-379 (400)
45 KOG0348 ATP-dependent RNA heli 100.0 3E-33 6.5E-38 305.2 24.6 363 252-677 161-574 (708)
46 KOG0347 RNA helicase [RNA proc 100.0 1.4E-34 3E-39 316.4 12.2 352 239-660 193-571 (731)
47 KOG0326 ATP-dependent RNA heli 100.0 1.9E-33 4.1E-38 289.5 17.2 325 238-661 96-431 (459)
48 TIGR01389 recQ ATP-dependent D 100.0 1.7E-32 3.8E-37 329.2 28.4 302 252-663 15-335 (591)
49 COG1201 Lhr Lhr-like helicases 100.0 3.8E-32 8.3E-37 322.1 30.2 386 238-717 11-438 (814)
50 KOG0335 ATP-dependent RNA heli 100.0 7.5E-33 1.6E-37 306.7 19.1 311 253-657 99-442 (482)
51 PRK10689 transcription-repair 100.0 1.9E-32 4.1E-37 342.4 24.6 331 217-658 567-918 (1147)
52 PRK09751 putative ATP-dependen 100.0 4.6E-32 1E-36 340.0 26.3 313 270-653 1-379 (1490)
53 COG1111 MPH1 ERCC4-like helica 100.0 3.5E-31 7.5E-36 290.6 25.8 381 249-659 14-481 (542)
54 KOG0336 ATP-dependent RNA heli 100.0 2.4E-32 5.2E-37 289.0 16.2 322 246-663 241-576 (629)
55 PRK10917 ATP-dependent DNA hel 100.0 8.7E-31 1.9E-35 317.1 28.8 302 246-657 257-587 (681)
56 KOG0332 ATP-dependent RNA heli 100.0 5.1E-31 1.1E-35 277.3 22.2 323 239-658 102-442 (477)
57 TIGR00643 recG ATP-dependent D 100.0 9.5E-31 2.1E-35 314.8 27.0 302 248-657 233-564 (630)
58 KOG0339 ATP-dependent RNA heli 100.0 2.7E-31 5.8E-36 287.8 18.2 314 254-662 249-578 (731)
59 KOG0350 DEAD-box ATP-dependent 100.0 5.1E-31 1.1E-35 286.3 18.5 324 250-660 159-541 (620)
60 KOG0346 RNA helicase [RNA proc 100.0 3.1E-30 6.8E-35 276.1 19.4 318 238-659 30-410 (569)
61 KOG0354 DEAD-box like helicase 100.0 1.7E-29 3.8E-34 292.5 26.5 389 245-659 57-529 (746)
62 TIGR02621 cas3_GSU0051 CRISPR- 100.0 3.8E-29 8.3E-34 298.3 29.9 349 247-695 12-428 (844)
63 KOG0341 DEAD-box protein abstr 100.0 3.7E-31 8.1E-36 278.3 10.7 311 253-660 195-529 (610)
64 TIGR01587 cas3_core CRISPR-ass 100.0 1.7E-29 3.7E-34 285.9 24.1 300 267-660 1-337 (358)
65 KOG0952 DNA/RNA helicase MER3/ 100.0 7.5E-29 1.6E-33 288.9 24.8 482 253-806 113-683 (1230)
66 KOG0344 ATP-dependent RNA heli 100.0 4E-28 8.6E-33 270.4 21.5 325 246-662 155-498 (593)
67 PHA02558 uvsW UvsW helicase; P 100.0 1.6E-27 3.4E-32 280.1 27.3 318 249-651 113-443 (501)
68 COG0514 RecQ Superfamily II DN 100.0 1.2E-27 2.6E-32 274.8 23.8 298 255-662 22-340 (590)
69 KOG0327 Translation initiation 100.0 3.9E-28 8.5E-33 258.4 17.2 327 238-664 37-375 (397)
70 KOG4284 DEAD box protein [Tran 100.0 2.6E-28 5.6E-33 270.8 15.2 321 247-659 45-379 (980)
71 PRK13766 Hef nuclease; Provisi 100.0 1.4E-26 3.1E-31 287.2 32.3 382 247-660 12-480 (773)
72 KOG0334 RNA helicase [RNA proc 100.0 6.6E-28 1.4E-32 284.2 18.7 333 230-659 364-720 (997)
73 TIGR03158 cas3_cyano CRISPR-as 100.0 1.3E-26 2.9E-31 260.8 27.0 306 254-645 1-357 (357)
74 KOG0948 Nuclear exosomal RNA h 100.0 1E-27 2.2E-32 270.1 16.5 366 247-660 126-540 (1041)
75 COG1205 Distinct helicase fami 99.9 6.5E-27 1.4E-31 285.4 24.3 332 247-657 67-420 (851)
76 KOG0947 Cytoplasmic exosomal R 99.9 5E-27 1.1E-31 270.5 21.2 371 245-659 292-723 (1248)
77 COG1197 Mfd Transcription-repa 99.9 1.7E-26 3.8E-31 277.2 24.8 355 193-659 538-913 (1139)
78 PRK09401 reverse gyrase; Revie 99.9 3.7E-26 8E-31 286.7 27.5 298 225-615 55-411 (1176)
79 KOG0921 Dosage compensation co 99.9 2.5E-28 5.5E-33 278.7 0.0 566 239-844 395-964 (1282)
80 PRK14701 reverse gyrase; Provi 99.9 2.5E-25 5.3E-30 284.6 26.0 341 225-662 54-459 (1638)
81 COG4581 Superfamily II RNA hel 99.9 2.7E-25 5.9E-30 267.1 24.2 370 245-657 114-535 (1041)
82 KOG0337 ATP-dependent RNA heli 99.9 7.8E-26 1.7E-30 241.6 16.4 326 238-659 32-368 (529)
83 KOG0951 RNA helicase BRR2, DEA 99.9 3.7E-24 8.1E-29 252.2 29.2 433 252-757 311-836 (1674)
84 TIGR00603 rad25 DNA repair hel 99.9 1.3E-24 2.9E-29 257.2 22.8 323 246-662 251-610 (732)
85 TIGR01054 rgy reverse gyrase. 99.9 3.2E-24 7E-29 269.7 26.8 293 233-617 61-412 (1171)
86 COG1200 RecG RecG-like helicas 99.9 3.1E-24 6.6E-29 245.7 24.0 303 247-659 259-591 (677)
87 PRK05580 primosome assembly pr 99.9 7.8E-24 1.7E-28 255.7 28.8 362 247-655 141-545 (679)
88 TIGR03714 secA2 accessory Sec 99.9 4.3E-23 9.3E-28 244.4 27.4 106 526-659 422-537 (762)
89 KOG0352 ATP-dependent DNA heli 99.9 1.6E-23 3.4E-28 223.6 20.4 319 254-664 25-367 (641)
90 PRK09694 helicase Cas3; Provis 99.9 7.8E-23 1.7E-27 248.8 28.7 325 248-647 284-662 (878)
91 COG1061 SSL2 DNA or RNA helica 99.9 6.2E-23 1.3E-27 236.8 26.3 328 245-647 31-376 (442)
92 TIGR00595 priA primosomal prot 99.9 4.3E-24 9.3E-29 249.3 16.8 332 269-654 1-376 (505)
93 PRK12898 secA preprotein trans 99.9 2.4E-22 5.3E-27 235.6 30.3 106 528-660 473-587 (656)
94 COG4098 comFA Superfamily II D 99.9 1.8E-22 3.9E-27 211.3 25.7 286 256-647 107-401 (441)
95 KOG0351 ATP-dependent DNA heli 99.9 5.5E-23 1.2E-27 249.2 24.2 307 253-665 267-598 (941)
96 TIGR00963 secA preprotein tran 99.9 1.2E-22 2.5E-27 239.2 25.6 107 526-659 403-517 (745)
97 PRK09200 preprotein translocas 99.9 8.3E-22 1.8E-26 235.8 31.4 107 526-659 426-541 (790)
98 PRK11448 hsdR type I restricti 99.9 2.6E-22 5.7E-27 250.8 28.2 368 249-666 412-823 (1123)
99 KOG0950 DNA polymerase theta/e 99.9 2E-21 4.2E-26 226.9 20.7 348 244-661 217-613 (1008)
100 KOG0353 ATP-dependent DNA heli 99.8 4.2E-20 9.1E-25 194.5 20.1 303 253-659 97-467 (695)
101 PRK04914 ATP-dependent helicas 99.8 1.3E-19 2.7E-24 222.2 26.8 123 513-659 478-605 (956)
102 KOG0349 Putative DEAD-box RNA 99.8 2E-20 4.3E-25 200.0 13.7 306 300-657 288-613 (725)
103 PRK13104 secA preprotein trans 99.8 1.3E-18 2.7E-23 207.9 21.1 125 247-377 77-213 (896)
104 KOG0329 ATP-dependent RNA heli 99.8 1E-18 2.2E-23 176.0 14.5 170 238-411 53-230 (387)
105 COG1203 CRISPR-associated heli 99.8 3.6E-18 7.8E-23 208.6 21.7 314 250-657 195-548 (733)
106 PRK12906 secA preprotein trans 99.8 2.6E-17 5.6E-22 196.0 23.8 107 526-659 438-553 (796)
107 COG4096 HsdR Type I site-speci 99.8 1.2E-17 2.7E-22 193.7 20.2 364 259-686 178-575 (875)
108 KOG0949 Predicted helicase, DE 99.8 8.2E-17 1.8E-21 187.1 23.9 164 249-418 510-682 (1330)
109 PRK12904 preprotein translocas 99.7 4.3E-17 9.4E-22 194.8 20.3 105 526-657 428-571 (830)
110 PF00270 DEAD: DEAD/DEAH box h 99.7 2.8E-17 6.2E-22 165.1 15.0 157 253-414 2-167 (169)
111 COG1198 PriA Primosomal protei 99.7 1.1E-16 2.4E-21 189.9 19.3 354 248-655 196-599 (730)
112 cd00268 DEADc DEAD-box helicas 99.7 1.3E-16 2.9E-21 165.7 17.2 156 251-410 22-186 (203)
113 TIGR00348 hsdR type I site-spe 99.7 4.6E-16 1E-20 188.3 24.1 350 247-651 236-639 (667)
114 COG1110 Reverse gyrase [DNA re 99.7 5.6E-16 1.2E-20 182.4 23.7 296 226-615 58-418 (1187)
115 PF04408 HA2: Helicase associa 99.7 3.1E-17 6.7E-22 150.7 7.2 92 710-801 1-102 (102)
116 PRK13107 preprotein translocas 99.7 3.1E-15 6.7E-20 178.6 25.0 123 248-376 78-212 (908)
117 PRK12899 secA preprotein trans 99.7 8E-15 1.7E-19 175.3 24.7 127 245-377 85-226 (970)
118 KOG0953 Mitochondrial RNA heli 99.6 6.3E-15 1.4E-19 163.4 19.8 276 264-659 190-477 (700)
119 PLN03142 Probable chromatin-re 99.6 7E-14 1.5E-18 172.6 26.9 111 527-662 486-602 (1033)
120 TIGR01407 dinG_rel DnaQ family 99.6 2.9E-13 6.4E-18 168.9 26.6 130 519-655 666-811 (850)
121 smart00847 HA2 Helicase associ 99.6 3.2E-15 7E-20 134.9 6.4 91 710-801 1-92 (92)
122 smart00487 DEXDc DEAD-like hel 99.5 3.8E-13 8.2E-18 137.5 16.3 156 248-409 6-171 (201)
123 KOG4150 Predicted ATP-dependen 99.5 2E-13 4.2E-18 151.0 10.5 324 246-652 282-633 (1034)
124 COG0556 UvrB Helicase subunit 99.5 1.5E-11 3.3E-16 136.7 25.1 110 527-656 445-554 (663)
125 cd00046 DEXDc DEAD-like helica 99.5 8.5E-13 1.9E-17 126.9 13.5 137 266-408 1-144 (144)
126 TIGR02562 cas3_yersinia CRISPR 99.4 9.8E-12 2.1E-16 150.1 24.3 98 531-650 759-882 (1110)
127 cd00079 HELICc Helicase superf 99.4 7.3E-13 1.6E-17 126.8 11.0 104 527-655 27-131 (131)
128 TIGR00631 uvrb excinuclease AB 99.4 9.2E-13 2E-17 158.1 12.2 125 515-659 428-553 (655)
129 PF00271 Helicase_C: Helicase 99.4 4.4E-13 9.5E-18 116.8 5.9 72 559-648 7-78 (78)
130 PF07652 Flavi_DEAD: Flaviviru 99.4 3.6E-12 7.9E-17 121.3 11.5 135 264-411 3-139 (148)
131 KOG1123 RNA polymerase II tran 99.4 8.5E-12 1.8E-16 136.9 15.7 329 250-660 302-654 (776)
132 PRK12326 preprotein translocas 99.4 5.6E-11 1.2E-15 139.5 23.5 122 247-376 75-208 (764)
133 PRK07246 bifunctional ATP-depe 99.4 1.6E-10 3.5E-15 142.7 28.5 152 518-681 639-812 (820)
134 PF04851 ResIII: Type III rest 99.3 6.4E-12 1.4E-16 127.6 12.8 147 249-409 2-183 (184)
135 PRK13103 secA preprotein trans 99.3 3.1E-11 6.7E-16 144.9 20.1 123 248-376 78-212 (913)
136 PRK05298 excinuclease ABC subu 99.3 4.2E-12 9.1E-17 153.5 12.8 123 516-658 433-556 (652)
137 KOG0385 Chromatin remodeling c 99.3 2.6E-10 5.7E-15 131.3 22.7 376 250-662 167-602 (971)
138 PRK08074 bifunctional ATP-depe 99.2 1.2E-09 2.6E-14 137.4 26.4 159 519-683 744-923 (928)
139 KOG0951 RNA helicase BRR2, DEA 99.2 3.3E-10 7.1E-15 135.9 18.2 322 263-670 1157-1508(1674)
140 smart00490 HELICc helicase sup 99.2 2.7E-11 5.9E-16 105.7 6.9 79 544-647 3-81 (82)
141 PRK12900 secA preprotein trans 99.2 7.1E-11 1.5E-15 142.2 11.5 107 527-660 597-712 (1025)
142 PRK14873 primosome assembly pr 99.2 2.3E-10 5E-15 137.3 15.9 131 273-416 168-311 (665)
143 KOG0387 Transcription-coupled 99.1 1.8E-08 4E-13 117.0 28.0 116 527-663 545-662 (923)
144 PF02399 Herpes_ori_bp: Origin 99.1 2E-09 4.2E-14 127.6 20.0 320 264-659 48-388 (824)
145 PRK12903 secA preprotein trans 99.1 2.2E-09 4.8E-14 127.8 19.6 103 526-655 424-535 (925)
146 CHL00122 secA preprotein trans 99.1 2.9E-09 6.4E-14 127.6 18.9 118 253-376 77-206 (870)
147 PRK12902 secA preprotein trans 99.0 4E-08 8.6E-13 117.8 23.4 123 248-376 81-215 (939)
148 KOG0384 Chromodomain-helicase 99.0 4.3E-08 9.3E-13 118.6 23.3 115 527-663 698-815 (1373)
149 KOG0390 DNA repair protein, SN 98.9 7.7E-08 1.7E-12 114.6 22.9 103 534-660 600-708 (776)
150 COG4889 Predicted helicase [Ge 98.9 2.2E-09 4.7E-14 124.6 8.5 106 530-653 462-578 (1518)
151 PF07717 OB_NTP_bind: Oligonuc 98.9 1.5E-09 3.2E-14 102.0 4.5 71 838-911 1-80 (114)
152 PRK11747 dinG ATP-dependent DN 98.8 5.1E-07 1.1E-11 110.5 25.1 128 516-655 524-671 (697)
153 COG1199 DinG Rad3-related DNA 98.8 6.4E-07 1.4E-11 109.9 24.2 137 527-672 478-635 (654)
154 KOG1000 Chromatin remodeling p 98.6 8.6E-06 1.9E-10 90.6 25.0 83 526-615 490-574 (689)
155 KOG0392 SNF2 family DNA-depend 98.6 7.4E-06 1.6E-10 99.5 25.5 115 529-662 1341-1457(1549)
156 TIGR03117 cas_csf4 CRISPR-asso 98.5 6.1E-07 1.3E-11 106.8 13.5 62 256-320 7-68 (636)
157 PF00176 SNF2_N: SNF2 family N 98.4 2E-06 4.2E-11 94.7 12.7 132 264-409 24-173 (299)
158 KOG0389 SNF2 family DNA-depend 98.4 1.5E-05 3.3E-10 93.3 18.7 114 527-662 776-891 (941)
159 COG0610 Type I site-specific r 98.3 1.9E-05 4.1E-10 99.5 20.7 135 266-408 274-413 (962)
160 KOG1002 Nucleotide excision re 98.1 0.0002 4.3E-09 79.9 19.9 126 514-661 621-751 (791)
161 PF06862 DUF1253: Protein of u 98.0 0.00053 1.2E-08 78.3 22.0 116 525-662 297-418 (442)
162 KOG0386 Chromatin remodeling c 98.0 3.9E-05 8.5E-10 92.0 12.7 125 513-662 709-841 (1157)
163 PF13245 AAA_19: Part of AAA d 97.9 3.3E-05 7E-10 66.8 7.5 60 258-318 3-62 (76)
164 PRK12723 flagellar biosynthesi 97.9 0.00013 2.8E-09 82.7 13.4 132 264-418 173-307 (388)
165 PF13401 AAA_22: AAA domain; P 97.9 2.8E-05 6.1E-10 74.4 6.6 118 263-406 2-124 (131)
166 COG0653 SecA Preprotein transl 97.8 0.00014 3E-09 87.8 13.1 120 251-376 79-210 (822)
167 TIGR00596 rad1 DNA repair prot 97.8 8.6E-05 1.9E-09 91.3 11.5 65 343-410 7-74 (814)
168 COG0553 HepA Superfamily II DN 97.8 0.0013 2.8E-08 83.6 22.2 111 530-662 713-825 (866)
169 PF02562 PhoH: PhoH-like prote 97.8 0.00012 2.7E-09 75.4 9.8 57 250-309 4-60 (205)
170 PF00448 SRP54: SRP54-type pro 97.7 9.8E-05 2.1E-09 76.2 8.6 127 266-413 2-130 (196)
171 COG1419 FlhF Flagellar GTP-bin 97.7 0.001 2.2E-08 74.5 16.7 130 265-418 203-333 (407)
172 PF13604 AAA_30: AAA domain; P 97.7 0.00021 4.6E-09 73.9 10.6 61 252-317 3-65 (196)
173 PRK12901 secA preprotein trans 97.7 0.00017 3.7E-09 88.2 10.7 102 527-655 627-737 (1112)
174 PRK10875 recD exonuclease V su 97.6 0.0017 3.6E-08 78.2 17.3 140 253-407 155-301 (615)
175 PRK11889 flhF flagellar biosyn 97.6 0.00088 1.9E-08 75.1 13.6 125 265-412 241-366 (436)
176 TIGR01447 recD exodeoxyribonuc 97.6 0.00074 1.6E-08 81.0 14.0 141 253-407 148-295 (586)
177 KOG1803 DNA helicase [Replicat 97.6 0.00016 3.5E-09 83.2 7.9 64 251-319 186-250 (649)
178 PRK10536 hypothetical protein; 97.5 0.00026 5.6E-09 75.1 8.5 60 247-309 56-115 (262)
179 PRK14722 flhF flagellar biosyn 97.5 0.00096 2.1E-08 75.2 13.4 127 263-413 135-262 (374)
180 smart00488 DEXDc2 DEAD-like he 97.5 0.00027 5.8E-09 77.6 8.3 76 245-320 3-83 (289)
181 smart00489 DEXDc3 DEAD-like he 97.5 0.00027 5.8E-09 77.6 8.3 76 245-320 3-83 (289)
182 KOG4439 RNA polymerase II tran 97.5 0.0099 2.1E-07 69.6 20.3 109 532-662 749-861 (901)
183 PRK05703 flhF flagellar biosyn 97.4 0.0025 5.5E-08 73.6 14.7 128 264-415 220-349 (424)
184 PRK12726 flagellar biosynthesi 97.4 0.0015 3.1E-08 73.1 11.9 131 264-417 205-336 (407)
185 PF09848 DUF2075: Uncharacteri 97.3 0.00053 1.1E-08 77.7 7.5 92 266-377 2-94 (352)
186 TIGR01448 recD_rel helicase, p 97.2 0.0021 4.6E-08 79.2 12.6 128 246-407 319-452 (720)
187 cd00009 AAA The AAA+ (ATPases 97.2 0.0032 7E-08 60.4 11.3 33 255-287 7-41 (151)
188 KOG0952 DNA/RNA helicase MER3/ 97.2 0.00016 3.5E-09 87.3 2.2 153 266-422 944-1108(1230)
189 PF07517 SecA_DEAD: SecA DEAD- 97.2 0.0029 6.2E-08 68.1 11.4 121 248-376 75-207 (266)
190 PF13307 Helicase_C_2: Helicas 97.2 0.00059 1.3E-08 68.7 5.8 120 527-654 8-144 (167)
191 PRK15483 type III restriction- 97.2 0.00098 2.1E-08 82.4 8.7 139 264-410 58-240 (986)
192 PF12340 DUF3638: Protein of u 97.1 0.0019 4.1E-08 67.4 9.2 129 242-376 15-182 (229)
193 PRK06526 transposase; Provisio 97.1 0.007 1.5E-07 65.1 13.7 30 260-289 93-122 (254)
194 PRK12727 flagellar biosynthesi 97.0 0.0043 9.3E-08 72.3 11.4 128 263-414 348-475 (559)
195 KOG0391 SNF2 family DNA-depend 97.0 0.005 1.1E-07 75.2 11.9 114 527-662 1275-1390(1958)
196 PF05729 NACHT: NACHT domain 96.9 0.0017 3.8E-08 64.3 6.8 61 369-429 84-151 (166)
197 PF13086 AAA_11: AAA domain; P 96.9 0.0016 3.5E-08 68.4 6.9 69 252-320 3-75 (236)
198 PRK14974 cell division protein 96.9 0.0051 1.1E-07 68.7 11.0 125 265-410 140-266 (336)
199 PF13872 AAA_34: P-loop contai 96.9 0.0031 6.8E-08 68.2 8.7 139 265-408 62-220 (303)
200 PRK04296 thymidine kinase; Pro 96.9 0.0061 1.3E-07 62.7 10.2 26 265-290 2-27 (190)
201 KOG2340 Uncharacterized conser 96.8 0.011 2.4E-07 67.1 12.6 112 528-661 552-670 (698)
202 PRK12724 flagellar biosynthesi 96.8 0.0096 2.1E-07 67.8 12.1 122 265-412 223-348 (432)
203 PF00580 UvrD-helicase: UvrD/R 96.8 0.002 4.3E-08 71.2 6.6 69 252-323 2-70 (315)
204 TIGR02768 TraA_Ti Ti-type conj 96.8 0.017 3.7E-07 71.7 15.1 123 248-405 350-474 (744)
205 PRK08181 transposase; Validate 96.8 0.045 9.7E-07 59.4 16.4 115 261-419 102-219 (269)
206 PF05970 PIF1: PIF1-like helic 96.7 0.0047 1E-07 70.2 9.0 58 252-314 3-66 (364)
207 PRK13889 conjugal transfer rel 96.7 0.013 2.8E-07 73.9 13.4 126 247-407 343-470 (988)
208 PRK06731 flhF flagellar biosyn 96.7 0.021 4.7E-07 61.8 13.0 127 264-413 74-201 (270)
209 PRK14723 flhF flagellar biosyn 96.7 0.019 4E-07 70.1 13.6 127 264-414 184-311 (767)
210 PRK14721 flhF flagellar biosyn 96.6 0.017 3.8E-07 66.2 12.6 129 263-415 189-318 (420)
211 PRK09183 transposase/IS protei 96.5 0.051 1.1E-06 58.7 14.6 27 262-288 99-125 (259)
212 TIGR00604 rad3 DNA repair heli 96.5 0.0078 1.7E-07 74.6 9.3 131 518-651 513-665 (705)
213 PRK06995 flhF flagellar biosyn 96.4 0.04 8.6E-07 64.3 13.8 127 264-414 255-382 (484)
214 smart00382 AAA ATPases associa 96.4 0.0067 1.5E-07 57.5 6.3 24 265-288 2-25 (148)
215 TIGR03499 FlhF flagellar biosy 96.3 0.015 3.2E-07 63.8 8.9 89 264-375 193-281 (282)
216 PHA03333 putative ATPase subun 96.3 0.11 2.5E-06 61.9 16.4 148 257-419 180-343 (752)
217 TIGR00376 DNA helicase, putati 96.2 0.011 2.3E-07 72.1 8.1 66 250-320 157-223 (637)
218 TIGR03015 pepcterm_ATPase puta 96.2 0.023 4.9E-07 61.6 9.6 22 265-286 43-64 (269)
219 PRK06835 DNA replication prote 96.1 0.037 8.1E-07 61.8 11.3 27 264-291 182-208 (329)
220 PF05127 Helicase_RecD: Helica 96.1 0.0011 2.4E-08 66.7 -0.8 117 269-409 1-124 (177)
221 PRK07952 DNA replication prote 96.1 0.29 6.2E-06 52.3 17.1 115 266-419 100-215 (244)
222 COG1875 NYN ribonuclease and A 96.0 0.037 8.1E-07 60.8 10.2 59 248-308 226-286 (436)
223 PRK00771 signal recognition pa 96.0 0.034 7.4E-07 64.3 10.5 124 265-410 95-219 (437)
224 PRK10416 signal recognition pa 95.9 0.072 1.6E-06 59.3 12.4 128 264-411 113-247 (318)
225 TIGR03420 DnaA_homol_Hda DnaA 95.9 0.058 1.3E-06 56.8 11.0 25 264-288 37-61 (226)
226 PRK14956 DNA polymerase III su 95.9 0.021 4.6E-07 66.2 8.1 31 258-288 30-63 (484)
227 TIGR01425 SRP54_euk signal rec 95.9 0.058 1.3E-06 62.0 11.4 124 266-409 101-225 (429)
228 PRK07003 DNA polymerase III su 95.9 0.041 9E-07 66.6 10.5 31 258-288 28-61 (830)
229 TIGR00064 ftsY signal recognit 95.8 0.049 1.1E-06 59.3 10.3 127 265-412 72-206 (272)
230 PF01695 IstB_IS21: IstB-like 95.8 0.022 4.8E-07 57.9 7.0 29 262-290 44-72 (178)
231 PF13173 AAA_14: AAA domain 95.8 0.06 1.3E-06 51.4 9.6 26 264-289 1-26 (128)
232 PRK11054 helD DNA helicase IV; 95.8 0.061 1.3E-06 66.0 11.8 119 236-376 182-302 (684)
233 PRK13826 Dtr system oriT relax 95.7 0.094 2E-06 66.8 13.5 125 248-407 379-505 (1102)
234 PRK07994 DNA polymerase III su 95.7 0.035 7.6E-07 67.0 9.3 32 257-288 27-61 (647)
235 PRK14949 DNA polymerase III su 95.7 0.033 7.1E-07 68.7 9.0 31 258-288 28-61 (944)
236 COG1484 DnaC DNA replication p 95.7 0.27 5.8E-06 53.0 15.0 117 259-418 99-218 (254)
237 PRK07764 DNA polymerase III su 95.6 0.067 1.4E-06 66.7 11.6 31 258-288 27-60 (824)
238 PRK10867 signal recognition pa 95.6 0.066 1.4E-06 61.8 10.8 124 266-408 101-225 (433)
239 PRK08727 hypothetical protein; 95.5 0.059 1.3E-06 57.3 9.4 22 266-287 42-63 (233)
240 PRK08116 hypothetical protein; 95.5 0.075 1.6E-06 57.7 10.3 27 265-292 114-140 (268)
241 PRK06893 DNA replication initi 95.5 0.049 1.1E-06 57.8 8.4 24 265-288 39-62 (229)
242 PRK00149 dnaA chromosomal repl 95.5 0.11 2.4E-06 60.9 12.2 36 266-304 149-184 (450)
243 KOG1802 RNA helicase nonsense 95.4 0.026 5.7E-07 65.8 6.5 65 252-320 412-476 (935)
244 PRK14961 DNA polymerase III su 95.4 0.083 1.8E-06 60.1 10.6 31 258-288 28-61 (363)
245 PRK05642 DNA replication initi 95.4 0.045 9.7E-07 58.3 7.8 18 266-283 46-63 (234)
246 COG3587 Restriction endonuclea 95.4 0.049 1.1E-06 65.5 8.6 52 585-654 483-537 (985)
247 PRK12323 DNA polymerase III su 95.4 0.12 2.6E-06 61.8 11.9 32 257-288 27-61 (700)
248 PF05621 TniB: Bacterial TniB 95.3 0.062 1.3E-06 58.5 8.6 122 266-408 62-189 (302)
249 TIGR02881 spore_V_K stage V sp 95.3 0.11 2.4E-06 56.3 10.7 22 265-286 42-63 (261)
250 KOG0388 SNF2 family DNA-depend 95.3 0.076 1.7E-06 62.3 9.4 114 527-662 1043-1157(1185)
251 KOG0989 Replication factor C, 95.2 0.076 1.6E-06 57.2 8.8 24 265-288 57-80 (346)
252 cd01124 KaiC KaiC is a circadi 95.2 0.028 6.1E-07 57.2 5.5 46 267-318 1-46 (187)
253 PRK00411 cdc6 cell division co 95.2 0.11 2.4E-06 59.7 11.0 22 266-287 56-77 (394)
254 PRK14964 DNA polymerase III su 95.2 0.071 1.5E-06 62.5 9.3 28 260-287 27-57 (491)
255 PRK14958 DNA polymerase III su 95.2 0.044 9.4E-07 65.0 7.6 32 257-288 27-61 (509)
256 PRK09112 DNA polymerase III su 95.2 0.06 1.3E-06 60.8 8.3 33 255-287 32-67 (351)
257 PRK14952 DNA polymerase III su 95.1 0.11 2.5E-06 62.2 10.9 31 258-288 25-58 (584)
258 PRK08691 DNA polymerase III su 95.1 0.1 2.2E-06 63.2 10.3 32 257-288 27-61 (709)
259 PRK08939 primosomal protein Dn 95.1 0.35 7.6E-06 53.6 14.0 26 264-289 155-180 (306)
260 PRK08084 DNA replication initi 95.1 0.1 2.3E-06 55.5 9.5 24 265-288 45-68 (235)
261 PRK14951 DNA polymerase III su 95.1 0.066 1.4E-06 64.5 8.7 30 258-287 28-60 (618)
262 PTZ00112 origin recognition co 95.1 0.25 5.5E-06 60.6 13.4 20 267-286 783-802 (1164)
263 PHA02533 17 large terminase pr 95.0 0.45 9.8E-06 56.7 15.5 161 247-417 56-219 (534)
264 cd03115 SRP The signal recogni 95.0 0.21 4.6E-06 50.3 11.2 123 267-410 2-126 (173)
265 PRK14957 DNA polymerase III su 95.0 0.1 2.2E-06 62.1 10.0 31 257-287 27-60 (546)
266 TIGR00362 DnaA chromosomal rep 95.0 0.14 3.1E-06 59.1 11.2 36 266-304 137-172 (405)
267 TIGR00604 rad3 DNA repair heli 95.0 0.043 9.3E-07 68.1 7.1 68 251-320 11-82 (705)
268 TIGR00959 ffh signal recogniti 95.0 0.15 3.3E-06 58.9 11.0 125 266-409 100-225 (428)
269 PRK12377 putative replication 94.9 0.36 7.7E-06 51.8 13.1 24 265-288 101-124 (248)
270 PRK08903 DnaA regulatory inact 94.9 0.19 4.1E-06 53.0 10.9 25 264-288 41-65 (227)
271 PRK12402 replication factor C 94.9 0.11 2.4E-06 58.2 9.6 34 255-288 24-59 (337)
272 COG1474 CDC6 Cdc6-related prot 94.8 0.15 3.3E-06 57.8 10.5 119 267-408 44-166 (366)
273 PRK14960 DNA polymerase III su 94.8 0.11 2.4E-06 62.3 9.5 33 256-288 25-60 (702)
274 KOG1805 DNA replication helica 94.8 0.063 1.4E-06 65.4 7.5 118 253-378 673-808 (1100)
275 COG1444 Predicted P-loop ATPas 94.8 0.12 2.7E-06 62.7 9.9 121 267-409 233-357 (758)
276 PF00308 Bac_DnaA: Bacterial d 94.8 0.32 6.9E-06 51.2 12.0 103 267-409 36-141 (219)
277 PF13177 DNA_pol3_delta2: DNA 94.8 0.076 1.6E-06 53.1 7.0 53 354-408 90-142 (162)
278 PF00004 AAA: ATPase family as 94.7 0.25 5.4E-06 46.7 10.3 19 268-286 1-19 (132)
279 COG2804 PulE Type II secretory 94.7 0.086 1.9E-06 60.8 8.0 39 250-288 241-281 (500)
280 KOG0391 SNF2 family DNA-depend 94.7 0.11 2.3E-06 64.2 9.0 148 252-408 617-775 (1958)
281 PRK06921 hypothetical protein; 94.7 0.34 7.4E-06 52.6 12.4 23 264-286 116-138 (266)
282 TIGR02880 cbbX_cfxQ probable R 94.7 0.23 5E-06 54.5 11.1 22 265-286 58-79 (284)
283 TIGR02782 TrbB_P P-type conjug 94.6 0.071 1.5E-06 58.9 7.0 54 255-311 122-175 (299)
284 PRK14087 dnaA chromosomal repl 94.6 0.24 5.3E-06 57.9 11.7 48 266-317 142-189 (450)
285 PRK11331 5-methylcytosine-spec 94.6 0.11 2.4E-06 59.7 8.5 32 255-286 184-215 (459)
286 PRK14963 DNA polymerase III su 94.6 0.047 1E-06 64.6 5.7 22 267-288 38-59 (504)
287 PRK14962 DNA polymerase III su 94.6 0.19 4.2E-06 59.0 10.7 30 258-287 26-58 (472)
288 TIGR02928 orc1/cdc6 family rep 94.6 0.2 4.4E-06 56.8 10.8 21 266-286 41-61 (365)
289 TIGR00678 holB DNA polymerase 94.5 0.12 2.6E-06 52.9 8.0 32 257-288 3-37 (188)
290 PRK07940 DNA polymerase III su 94.4 0.37 8E-06 55.3 12.3 22 266-287 37-58 (394)
291 PRK09111 DNA polymerase III su 94.4 0.25 5.5E-06 59.6 11.3 50 354-405 120-169 (598)
292 PRK07471 DNA polymerase III su 94.3 0.3 6.5E-06 55.5 11.3 63 344-408 119-181 (365)
293 cd01120 RecA-like_NTPases RecA 94.3 0.14 3E-06 50.2 7.8 24 267-290 1-24 (165)
294 PRK13833 conjugal transfer pro 94.3 0.077 1.7E-06 59.0 6.3 53 256-311 135-187 (323)
295 PLN03025 replication factor C 94.3 0.17 3.7E-06 56.5 9.3 23 266-288 35-57 (319)
296 COG2256 MGS1 ATPase related to 94.3 0.13 2.7E-06 57.6 7.8 27 260-286 41-69 (436)
297 PRK14969 DNA polymerase III su 94.3 0.24 5.2E-06 59.1 10.8 49 355-405 108-156 (527)
298 CHL00181 cbbX CbbX; Provisiona 94.2 0.15 3.2E-06 56.0 8.4 23 265-287 59-81 (287)
299 COG3421 Uncharacterized protei 94.2 0.21 4.5E-06 58.1 9.5 70 341-410 79-167 (812)
300 PRK10919 ATP-dependent DNA hel 94.2 0.088 1.9E-06 64.8 7.2 107 251-376 3-112 (672)
301 TIGR02760 TraI_TIGR conjugativ 94.2 0.36 7.9E-06 65.9 13.5 138 248-407 427-566 (1960)
302 PRK06645 DNA polymerase III su 94.1 0.17 3.7E-06 59.8 9.0 28 261-288 36-66 (507)
303 KOG2373 Predicted mitochondria 94.1 0.016 3.5E-07 62.8 0.4 134 255-395 263-413 (514)
304 PF05496 RuvB_N: Holliday junc 94.1 0.11 2.3E-06 54.3 6.4 21 266-286 51-71 (233)
305 PRK12900 secA preprotein trans 94.1 0.06 1.3E-06 66.7 5.3 114 257-376 143-268 (1025)
306 COG1435 Tdk Thymidine kinase [ 94.0 0.19 4.1E-06 51.1 7.8 118 265-411 4-121 (201)
307 PRK08451 DNA polymerase III su 94.0 0.2 4.4E-06 59.3 9.3 33 256-288 24-59 (535)
308 PRK14959 DNA polymerase III su 94.0 0.27 5.8E-06 59.1 10.3 32 257-288 27-61 (624)
309 COG3973 Superfamily I DNA and 93.9 0.1 2.2E-06 60.8 6.4 64 254-318 216-280 (747)
310 TIGR03878 thermo_KaiC_2 KaiC d 93.9 0.15 3.2E-06 55.2 7.4 40 263-305 34-73 (259)
311 PRK05707 DNA polymerase III su 93.9 0.12 2.7E-06 57.7 6.9 37 251-287 4-44 (328)
312 PRK08533 flagellar accessory p 93.8 0.13 2.7E-06 54.7 6.6 41 262-305 21-61 (230)
313 PRK13894 conjugal transfer ATP 93.8 0.12 2.6E-06 57.6 6.6 53 255-310 138-190 (319)
314 PRK07133 DNA polymerase III su 93.8 0.22 4.9E-06 60.7 9.4 31 257-287 29-62 (725)
315 KOG2028 ATPase related to the 93.7 0.82 1.8E-05 50.4 12.4 28 259-286 154-183 (554)
316 COG0470 HolB ATPase involved i 93.7 0.19 4.1E-06 55.9 8.1 52 352-405 95-146 (325)
317 PRK14088 dnaA chromosomal repl 93.6 0.7 1.5E-05 54.0 12.9 38 266-306 131-168 (440)
318 PRK13851 type IV secretion sys 93.6 0.093 2E-06 58.9 5.4 49 257-311 154-202 (344)
319 PRK12422 chromosomal replicati 93.5 0.22 4.9E-06 58.0 8.4 20 266-285 142-161 (445)
320 PHA02544 44 clamp loader, smal 93.4 0.43 9.3E-06 53.1 10.3 30 257-286 32-64 (316)
321 PRK00440 rfc replication facto 93.3 0.75 1.6E-05 51.0 12.1 20 267-286 40-59 (319)
322 PRK05896 DNA polymerase III su 93.3 0.21 4.6E-06 59.7 7.9 31 257-287 27-60 (605)
323 PRK14955 DNA polymerase III su 93.2 0.12 2.5E-06 59.6 5.6 31 258-288 28-61 (397)
324 PF01637 Arch_ATPase: Archaeal 93.2 0.12 2.7E-06 54.0 5.4 31 256-286 9-41 (234)
325 PRK14965 DNA polymerase III su 93.2 0.44 9.5E-06 57.6 10.5 33 256-288 26-61 (576)
326 PRK09087 hypothetical protein; 93.1 0.51 1.1E-05 49.9 9.8 20 265-284 44-63 (226)
327 TIGR01074 rep ATP-dependent DN 93.1 0.19 4.1E-06 62.1 7.5 106 252-376 3-111 (664)
328 PTZ00293 thymidine kinase; Pro 93.1 0.37 8.1E-06 50.1 8.4 27 264-290 3-29 (211)
329 PF01443 Viral_helicase1: Vira 93.0 0.052 1.1E-06 57.4 2.2 20 268-287 1-20 (234)
330 PHA03368 DNA packaging termina 93.0 0.94 2E-05 54.3 12.4 161 241-418 233-400 (738)
331 TIGR01547 phage_term_2 phage t 93.0 0.63 1.4E-05 53.6 11.2 134 266-409 2-141 (396)
332 PF03354 Terminase_1: Phage Te 93.0 0.26 5.7E-06 58.2 8.2 135 267-408 24-164 (477)
333 PRK14712 conjugal transfer nic 93.0 1.1 2.4E-05 59.3 14.2 62 250-314 835-900 (1623)
334 PRK12901 secA preprotein trans 92.9 0.13 2.8E-06 64.0 5.5 114 257-376 174-300 (1112)
335 TIGR02397 dnaX_nterm DNA polym 92.9 0.87 1.9E-05 51.4 12.0 37 354-392 105-141 (355)
336 PRK11773 uvrD DNA-dependent he 92.8 0.2 4.3E-06 62.4 7.1 70 251-323 10-79 (721)
337 PRK05563 DNA polymerase III su 92.8 0.31 6.7E-06 58.6 8.5 22 266-287 39-60 (559)
338 PRK14948 DNA polymerase III su 92.8 0.38 8.3E-06 58.4 9.3 31 258-288 28-61 (620)
339 TIGR01075 uvrD DNA helicase II 92.7 0.18 3.9E-06 62.8 6.5 70 251-323 5-74 (715)
340 PRK14086 dnaA chromosomal repl 92.7 0.69 1.5E-05 55.5 11.0 44 266-313 315-358 (617)
341 PRK14950 DNA polymerase III su 92.7 0.31 6.8E-06 59.0 8.3 30 258-287 28-60 (585)
342 PF00931 NB-ARC: NB-ARC domain 92.6 0.2 4.2E-06 54.8 6.1 68 256-325 6-77 (287)
343 cd02641 R3H_Smubp-2_like R3H d 92.6 0.29 6.3E-06 40.2 5.4 55 83-137 2-60 (60)
344 PF00437 T2SE: Type II/IV secr 92.4 0.11 2.5E-06 56.3 3.8 47 258-309 120-166 (270)
345 TIGR02688 conserved hypothetic 92.4 0.23 4.9E-06 56.6 6.2 29 260-288 204-232 (449)
346 PRK04195 replication factor C 92.4 0.8 1.7E-05 54.2 11.2 23 265-287 39-61 (482)
347 COG4962 CpaF Flp pilus assembl 92.4 0.2 4.4E-06 55.2 5.5 49 258-312 166-214 (355)
348 KOG1132 Helicase of the DEAD s 92.3 0.46 1E-05 57.8 8.8 135 515-650 549-712 (945)
349 PRK14953 DNA polymerase III su 92.3 0.34 7.4E-06 57.2 7.8 31 257-287 27-60 (486)
350 PRK13900 type IV secretion sys 92.2 0.2 4.3E-06 56.2 5.5 48 258-311 153-200 (332)
351 KOG1015 Transcription regulato 92.2 0.61 1.3E-05 56.9 9.5 130 515-659 1127-1277(1567)
352 PRK14971 DNA polymerase III su 92.2 0.8 1.7E-05 55.7 10.9 30 257-286 28-60 (614)
353 COG1618 Predicted nucleotide k 92.2 0.69 1.5E-05 45.6 8.2 111 266-395 6-129 (179)
354 PHA00729 NTP-binding motif con 92.1 0.37 8E-06 50.6 6.9 21 267-287 19-39 (226)
355 TIGR03345 VI_ClpV1 type VI sec 92.0 0.83 1.8E-05 57.7 11.1 19 267-285 598-616 (852)
356 cd01130 VirB11-like_ATPase Typ 91.9 0.22 4.7E-06 51.0 5.0 28 257-284 17-44 (186)
357 COG2255 RuvB Holliday junction 91.9 0.57 1.2E-05 50.3 8.0 21 266-286 53-73 (332)
358 PRK13709 conjugal transfer nic 91.9 2.4 5.2E-05 57.0 15.4 65 249-314 966-1032(1747)
359 TIGR01073 pcrA ATP-dependent D 91.7 0.48 1E-05 59.2 8.6 106 251-376 5-113 (726)
360 TIGR02760 TraI_TIGR conjugativ 91.6 0.82 1.8E-05 62.6 11.2 62 249-314 1018-1084(1960)
361 COG4626 Phage terminase-like p 91.5 1.2 2.6E-05 52.2 10.8 152 246-407 57-224 (546)
362 TIGR02655 circ_KaiC circadian 91.4 0.31 6.7E-06 57.7 6.2 51 263-319 261-311 (484)
363 cd02640 R3H_NRF R3H domain of 91.2 0.47 1E-05 38.9 5.2 52 86-137 5-60 (60)
364 PRK11823 DNA repair protein Ra 91.2 0.35 7.6E-06 56.5 6.3 87 262-376 77-166 (446)
365 PRK06647 DNA polymerase III su 91.2 0.71 1.5E-05 55.5 9.0 32 257-288 27-61 (563)
366 COG0541 Ffh Signal recognition 91.2 1.5 3.2E-05 50.0 10.7 134 266-418 101-236 (451)
367 TIGR02785 addA_Gpos recombinat 91.1 0.26 5.5E-06 65.0 5.5 133 253-390 4-139 (1232)
368 PF06745 KaiC: KaiC; InterPro 91.1 0.29 6.3E-06 51.6 5.0 39 264-304 18-56 (226)
369 cd01122 GP4d_helicase GP4d_hel 91.0 0.61 1.3E-05 50.6 7.6 32 259-290 24-55 (271)
370 PF03266 NTPase_1: NTPase; In 91.0 0.74 1.6E-05 46.3 7.6 23 267-290 1-23 (168)
371 cd01393 recA_like RecA is a b 91.0 0.33 7.1E-06 51.1 5.3 29 262-290 16-44 (226)
372 TIGR02524 dot_icm_DotB Dot/Icm 90.9 0.46 9.9E-06 53.8 6.6 32 258-290 126-158 (358)
373 PRK14970 DNA polymerase III su 90.9 1 2.2E-05 51.3 9.6 30 256-285 27-59 (367)
374 COG0593 DnaA ATPase involved i 90.8 2.2 4.7E-05 48.8 11.9 37 265-304 113-149 (408)
375 TIGR00767 rho transcription te 90.8 0.58 1.3E-05 53.2 7.2 28 262-290 165-192 (415)
376 PF13555 AAA_29: P-loop contai 90.8 0.26 5.7E-06 40.7 3.3 19 265-283 23-41 (62)
377 PRK13342 recombination factor 90.7 1 2.2E-05 52.3 9.5 20 267-286 38-57 (413)
378 TIGR03877 thermo_KaiC_1 KaiC d 90.5 0.47 1E-05 50.6 6.0 51 263-319 19-69 (237)
379 COG0552 FtsY Signal recognitio 90.3 1.7 3.6E-05 48.0 9.9 124 266-409 140-270 (340)
380 TIGR02788 VirB11 P-type DNA tr 90.3 0.41 8.9E-06 53.2 5.5 26 259-284 138-163 (308)
381 PRK14954 DNA polymerase III su 90.2 0.65 1.4E-05 56.3 7.4 30 258-287 28-60 (620)
382 PRK08058 DNA polymerase III su 90.1 0.96 2.1E-05 50.7 8.3 21 267-287 30-50 (329)
383 KOG2228 Origin recognition com 90.1 4.2 9.1E-05 44.8 12.6 129 264-410 48-183 (408)
384 PRK08769 DNA polymerase III su 90.1 1.5 3.2E-05 48.8 9.6 52 353-407 100-152 (319)
385 PRK07399 DNA polymerase III su 90.0 1.5 3.2E-05 48.9 9.6 60 345-407 103-162 (314)
386 PRK10865 protein disaggregatio 89.9 2.5 5.4E-05 53.6 12.6 23 267-290 600-622 (857)
387 cd01129 PulE-GspE PulE/GspE Th 89.9 0.41 8.8E-06 52.0 4.9 30 257-286 71-101 (264)
388 COG3267 ExeA Type II secretory 89.9 1.8 3.9E-05 45.9 9.4 59 257-320 42-101 (269)
389 cd03247 ABCC_cytochrome_bd The 89.8 1.2 2.5E-05 45.1 7.9 22 263-284 26-47 (178)
390 COG2805 PilT Tfp pilus assembl 89.7 0.22 4.9E-06 53.6 2.7 26 264-290 124-149 (353)
391 smart00491 HELICc2 helicase su 89.7 0.44 9.6E-06 46.5 4.5 77 575-651 34-130 (142)
392 COG1110 Reverse gyrase [DNA re 89.6 0.68 1.5E-05 57.3 6.8 68 526-594 123-190 (1187)
393 PRK06871 DNA polymerase III su 89.4 1.4 3E-05 49.2 8.7 32 256-287 12-46 (325)
394 PRK04328 hypothetical protein; 89.3 0.78 1.7E-05 49.3 6.5 38 264-304 22-59 (249)
395 PF12846 AAA_10: AAA-like doma 89.3 0.44 9.5E-06 52.1 4.8 42 265-311 1-42 (304)
396 PRK10917 ATP-dependent DNA hel 89.3 0.99 2.1E-05 55.8 8.3 79 527-608 309-388 (681)
397 TIGR02012 tigrfam_recA protein 89.2 0.71 1.5E-05 51.3 6.2 30 261-290 51-80 (321)
398 PRK05973 replicative DNA helic 89.2 0.62 1.3E-05 49.5 5.5 60 255-320 54-113 (237)
399 cd01121 Sms Sms (bacterial rad 89.2 0.89 1.9E-05 51.8 7.1 29 262-290 79-107 (372)
400 PF13207 AAA_17: AAA domain; P 89.1 0.31 6.6E-06 45.7 2.9 20 267-286 1-20 (121)
401 TIGR02525 plasmid_TraJ plasmid 89.1 0.78 1.7E-05 52.2 6.6 42 263-307 147-188 (372)
402 PF05894 Podovirus_Gp16: Podov 89.0 5.4 0.00012 43.6 12.4 133 265-407 17-160 (333)
403 TIGR02639 ClpA ATP-dependent C 88.9 1.9 4.1E-05 53.9 10.4 23 265-287 203-225 (731)
404 PRK11034 clpA ATP-dependent Cl 88.8 3.5 7.6E-05 51.3 12.5 22 265-286 207-228 (758)
405 PRK04301 radA DNA repair and r 88.8 0.8 1.7E-05 51.1 6.4 29 262-290 99-127 (317)
406 cd01131 PilT Pilus retraction 88.7 0.34 7.4E-06 50.1 3.1 20 266-285 2-21 (198)
407 PF00265 TK: Thymidine kinase; 88.7 0.77 1.7E-05 46.6 5.6 37 266-307 2-38 (176)
408 TIGR01420 pilT_fam pilus retra 88.6 0.59 1.3E-05 52.8 5.2 21 264-284 121-141 (343)
409 COG0467 RAD55 RecA-superfamily 88.6 0.79 1.7E-05 49.5 6.0 57 262-325 20-76 (260)
410 TIGR02640 gas_vesic_GvpN gas v 88.5 0.56 1.2E-05 50.8 4.8 34 253-286 9-42 (262)
411 PF05876 Terminase_GpA: Phage 88.5 0.36 7.7E-06 58.1 3.6 71 248-322 14-87 (557)
412 TIGR03117 cas_csf4 CRISPR-asso 88.5 1.5 3.2E-05 53.3 8.7 122 527-658 469-616 (636)
413 PRK06964 DNA polymerase III su 88.4 1.2 2.6E-05 50.0 7.4 60 346-407 112-171 (342)
414 cd00267 ABC_ATPase ABC (ATP-bi 88.2 0.73 1.6E-05 45.5 5.0 22 263-284 23-44 (157)
415 PLN03187 meiotic recombination 88.2 0.77 1.7E-05 51.6 5.7 29 263-291 124-152 (344)
416 COG1074 RecB ATP-dependent exo 88.1 0.64 1.4E-05 60.7 5.7 61 263-323 14-74 (1139)
417 cd01128 rho_factor Transcripti 88.0 0.37 8E-06 51.7 3.0 22 262-283 13-34 (249)
418 PRK05564 DNA polymerase III su 88.0 2.9 6.2E-05 46.6 10.1 31 256-286 14-47 (313)
419 PRK05580 primosome assembly pr 88.0 0.94 2E-05 55.9 6.8 74 528-608 190-263 (679)
420 KOG2543 Origin recognition com 87.9 2 4.4E-05 47.9 8.5 144 247-412 6-162 (438)
421 PRK10436 hypothetical protein; 87.7 0.69 1.5E-05 54.1 5.2 30 255-284 206-237 (462)
422 PRK06305 DNA polymerase III su 87.7 1.8 3.9E-05 50.8 8.5 32 257-288 28-62 (451)
423 KOG0739 AAA+-type ATPase [Post 87.6 4.7 0.0001 43.6 10.6 39 239-283 141-184 (439)
424 PRK13341 recombination factor 87.5 3.2 7E-05 51.4 11.0 21 266-286 53-73 (725)
425 PHA00149 DNA encapsidation pro 87.4 6.5 0.00014 42.4 11.5 132 269-408 21-160 (331)
426 TIGR00595 priA primosomal prot 87.3 1.1 2.5E-05 53.2 6.7 75 527-608 24-98 (505)
427 KOG0741 AAA+-type ATPase [Post 87.3 3 6.4E-05 48.4 9.5 36 267-309 540-575 (744)
428 PHA02244 ATPase-like protein 87.3 1.3 2.8E-05 49.9 6.7 34 253-286 107-140 (383)
429 TIGR03881 KaiC_arch_4 KaiC dom 87.3 1.1 2.4E-05 47.2 6.1 29 262-290 17-45 (229)
430 COG0630 VirB11 Type IV secreto 87.2 0.59 1.3E-05 52.0 4.0 47 257-309 135-181 (312)
431 PRK08699 DNA polymerase III su 87.2 4 8.7E-05 45.7 10.7 22 266-287 22-43 (325)
432 PRK03992 proteasome-activating 87.2 2.2 4.7E-05 49.1 8.8 21 265-285 165-185 (389)
433 COG1222 RPT1 ATP-dependent 26S 87.2 3.5 7.6E-05 45.8 9.7 20 263-282 183-202 (406)
434 PF03237 Terminase_6: Terminas 87.2 6.6 0.00014 44.0 12.8 100 269-376 1-107 (384)
435 TIGR02974 phageshock_pspF psp 87.1 4.2 9.1E-05 45.6 10.8 29 255-283 12-40 (329)
436 PRK13764 ATPase; Provisional 87.1 0.91 2E-05 54.6 5.8 32 258-290 249-281 (602)
437 cd03221 ABCF_EF-3 ABCF_EF-3 E 87.0 2.1 4.6E-05 41.7 7.5 22 263-284 24-45 (144)
438 cd03228 ABCC_MRP_Like The MRP 87.0 1.4 3E-05 44.3 6.3 21 263-283 26-46 (171)
439 KOG2036 Predicted P-loop ATPas 86.9 6.4 0.00014 47.0 12.0 147 242-409 249-412 (1011)
440 TIGR03346 chaperone_ClpB ATP-d 86.8 5.4 0.00012 50.7 12.8 20 267-286 597-616 (852)
441 TIGR02538 type_IV_pilB type IV 86.8 0.75 1.6E-05 55.5 4.9 28 257-284 307-335 (564)
442 KOG0733 Nuclear AAA ATPase (VC 86.8 0.88 1.9E-05 53.5 5.1 19 265-283 545-563 (802)
443 smart00492 HELICc3 helicase su 86.8 1.2 2.6E-05 43.5 5.4 83 569-651 31-129 (141)
444 PF13238 AAA_18: AAA domain; P 86.7 0.4 8.6E-06 45.1 2.1 18 268-285 1-18 (129)
445 cd00544 CobU Adenosylcobinamid 86.6 1.6 3.6E-05 43.9 6.5 45 268-320 2-46 (169)
446 COG1219 ClpX ATP-dependent pro 86.5 0.37 8E-06 52.3 1.9 20 264-283 96-115 (408)
447 COG2204 AtoC Response regulato 86.5 3.6 7.8E-05 47.9 9.9 99 255-383 154-252 (464)
448 COG2812 DnaX DNA polymerase II 86.5 0.47 1E-05 55.8 2.8 51 354-408 107-157 (515)
449 cd03222 ABC_RNaseL_inhibitor T 86.4 2.1 4.5E-05 43.5 7.2 24 261-284 21-44 (177)
450 TIGR02655 circ_KaiC circadian 86.3 1.2 2.5E-05 52.9 6.1 40 263-304 19-58 (484)
451 COG1126 GlnQ ABC-type polar am 86.3 0.4 8.8E-06 49.5 1.9 21 262-282 25-45 (240)
452 TIGR03263 guanyl_kin guanylate 86.2 0.58 1.3E-05 47.2 3.1 22 265-286 1-22 (180)
453 PRK06067 flagellar accessory p 86.1 1.3 2.9E-05 46.9 5.9 39 263-304 23-61 (234)
454 PRK06090 DNA polymerase III su 85.9 4 8.8E-05 45.4 9.7 32 256-287 13-47 (319)
455 PRK13695 putative NTPase; Prov 85.9 3.8 8.2E-05 41.2 8.8 20 267-286 2-21 (174)
456 PF13671 AAA_33: AAA domain; P 85.6 0.63 1.4E-05 44.8 2.9 20 267-286 1-20 (143)
457 PRK07993 DNA polymerase III su 85.6 1.5 3.3E-05 49.2 6.2 52 353-407 95-146 (334)
458 TIGR00643 recG ATP-dependent D 85.5 2.4 5.3E-05 51.9 8.5 79 527-608 283-362 (630)
459 TIGR03880 KaiC_arch_3 KaiC dom 85.3 1.5 3.3E-05 46.1 5.9 50 264-319 15-64 (224)
460 PRK08760 replicative DNA helic 85.3 1.6 3.6E-05 51.4 6.6 60 256-320 220-279 (476)
461 TIGR00631 uvrb excinuclease AB 85.3 2.7 5.8E-05 51.6 8.6 51 267-325 31-81 (655)
462 PRK09376 rho transcription ter 85.1 1.6 3.5E-05 49.6 6.1 29 262-291 166-194 (416)
463 PRK04841 transcriptional regul 85.1 3 6.6E-05 53.4 9.5 33 255-287 19-54 (903)
464 cd02034 CooC The accessory pro 85.0 5 0.00011 37.7 8.6 36 268-306 2-37 (116)
465 KOG0388 SNF2 family DNA-depend 85.0 3.4 7.3E-05 49.3 8.7 145 253-408 570-733 (1185)
466 TIGR02533 type_II_gspE general 85.0 1 2.2E-05 53.2 4.7 33 253-285 228-262 (486)
467 COG0513 SrmB Superfamily II DN 85.0 2.5 5.3E-05 50.5 8.0 72 531-608 102-179 (513)
468 TIGR02237 recomb_radB DNA repa 85.0 1.7 3.6E-05 45.2 5.9 38 264-304 11-48 (209)
469 PRK14873 primosome assembly pr 84.9 1.4 3.1E-05 53.9 6.0 76 527-608 187-262 (665)
470 PF12775 AAA_7: P-loop contain 84.8 1.1 2.4E-05 48.7 4.7 25 262-286 30-54 (272)
471 TIGR03819 heli_sec_ATPase heli 84.7 1.3 2.9E-05 49.8 5.3 50 255-310 167-217 (340)
472 COG2909 MalT ATP-dependent tra 84.7 2.8 6.1E-05 51.4 8.2 36 252-287 21-59 (894)
473 PRK00300 gmk guanylate kinase; 84.7 0.76 1.6E-05 47.5 3.1 23 264-286 4-26 (205)
474 TIGR01650 PD_CobS cobaltochela 84.5 1.2 2.6E-05 49.5 4.7 33 256-288 55-87 (327)
475 cd01394 radB RadB. The archaea 84.5 1.1 2.3E-05 47.0 4.2 28 263-290 17-44 (218)
476 KOG0780 Signal recognition par 84.4 5.5 0.00012 44.6 9.5 134 265-417 101-236 (483)
477 PLN02165 adenylate isopentenyl 84.2 0.81 1.7E-05 50.9 3.2 21 264-284 42-62 (334)
478 cd00984 DnaB_C DnaB helicase C 84.1 0.74 1.6E-05 48.9 2.9 33 260-292 8-40 (242)
479 cd00071 GMPK Guanosine monopho 84.0 0.79 1.7E-05 44.4 2.7 19 268-286 2-20 (137)
480 CHL00176 ftsH cell division pr 83.9 4.6 0.0001 49.3 9.8 22 265-286 216-237 (638)
481 COG3598 RepA RecA-family ATPas 83.8 5.7 0.00012 43.6 9.1 117 257-376 80-204 (402)
482 PF07728 AAA_5: AAA domain (dy 83.8 0.86 1.9E-05 43.9 2.9 20 267-286 1-20 (139)
483 TIGR01243 CDC48 AAA family ATP 83.7 2.5 5.4E-05 52.9 7.6 22 265-286 487-508 (733)
484 cd06007 R3H_DEXH_helicase R3H 83.7 2.1 4.6E-05 35.0 4.6 43 88-131 7-49 (59)
485 TIGR03689 pup_AAA proteasome A 83.6 3.2 7E-05 49.1 8.0 19 265-283 216-234 (512)
486 TIGR00602 rad24 checkpoint pro 83.6 4 8.6E-05 49.7 8.9 22 265-286 110-131 (637)
487 PRK14729 miaA tRNA delta(2)-is 83.5 0.93 2E-05 49.9 3.3 22 264-285 3-24 (300)
488 TIGR01817 nifA Nif-specific re 83.5 5.4 0.00012 47.9 10.2 29 255-283 209-237 (534)
489 COG0542 clpA ATP-binding subun 83.2 6.9 0.00015 48.3 10.7 120 266-416 522-651 (786)
490 TIGR00763 lon ATP-dependent pr 83.2 4.6 9.9E-05 50.8 9.7 22 265-286 347-368 (775)
491 KOG0737 AAA+-type ATPase [Post 83.1 1.7 3.6E-05 48.4 5.0 20 264-283 126-145 (386)
492 PRK05022 anaerobic nitric oxid 83.0 5.5 0.00012 47.6 9.8 32 254-285 199-230 (509)
493 PRK14530 adenylate kinase; Pro 83.0 0.97 2.1E-05 47.3 3.1 22 265-286 3-24 (215)
494 PF13871 Helicase_C_4: Helicas 83.0 5.2 0.00011 43.5 8.6 122 577-750 53-177 (278)
495 TIGR00750 lao LAO/AO transport 82.9 1.6 3.5E-05 48.3 5.0 40 264-306 33-72 (300)
496 TIGR00580 mfd transcription-re 82.7 3.6 7.8E-05 52.4 8.4 79 527-608 499-578 (926)
497 PRK08233 hypothetical protein; 82.7 0.99 2.1E-05 45.5 3.0 22 265-286 3-24 (182)
498 COG1136 SalX ABC-type antimicr 82.5 0.85 1.9E-05 47.9 2.4 22 262-283 28-49 (226)
499 cd01125 repA Hexameric Replica 82.3 5.2 0.00011 42.6 8.4 25 265-289 1-25 (239)
500 CHL00095 clpC Clp protease ATP 82.3 5.9 0.00013 50.2 10.2 20 267-286 541-560 (821)
No 1
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=100.00 E-value=9.2e-130 Score=1150.61 Aligned_cols=775 Identities=47% Similarity=0.749 Sum_probs=694.0
Q ss_pred cccccccHHHHHHHHhhhhccCCCceEEeccccCcccHHHHHHHHHHcccceeecc--cEEEEecCCCCCCCCCCCCCC-
Q 002521 75 ASSTVANINEWKWKLGMLLRSETDQEVTSWDKRDRRDYEQISFLAKRMGLYSQVYG--KAVVVSKFPLPNYRPDLDDRR- 151 (913)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~- 151 (913)
++....++..|.|+.++.......+|++....++|++++.++.+...++.+.+.|. +..++++.+.|+|..+++.+.
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 96 (924)
T KOG0920|consen 17 GEFLSMDSHAWLRDSSSSKEMTDDDEVIRALTQSRLPKNLLEKLIQIARSSSTAKNLMKFHTVSKITEPSRLLDLSPKPM 96 (924)
T ss_pred cccccccccccccCccccccccCcceeehhccccCcccccchHHHHHHHhhhhhhhcccceeeeccCCCCceeeeccccc
Confidence 55555599999999997777788899999999999999999999999999988775 578999999999999999988
Q ss_pred -CccccccchhhhHHHHHHHHHHHhhccCCCCCCcccccCCCCccccccccccCCCCCCCchHHHHHHHHHHHHHHHHHH
Q 002521 152 -PQREVVIPLSLQRRVEGLLQEHLDRTQLSSGKISEKSEESKPIDLAENVNMKENTDSFLDGSVMEKVLQRRSLQMRNMQ 230 (913)
Q Consensus 152 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (913)
++.+..+..+...+...++..+..... ..+.....-+.+ . .. ..+...... ... .+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~--~~--~~d~~~~~~---s~~-------------~~ 153 (924)
T KOG0920|consen 97 TLQAKLKLKAEAENKAAALVCKLLESLK-LVDRNNENLLLP--T--TG--QKDEPLLKK---SIS-------------RQ 153 (924)
T ss_pred chhhhheecccccchhHHHHHHHHHHhc-cCCCcccccccc--c--cc--ccccccCcc---hhh-------------hh
Confidence 788888999999998888888776655 322211111111 0 00 111111111 000 45
Q ss_pred HHhhcCchhhhHHhhhcCCCcHHHHHHHHHHHHcCCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHH
Q 002521 231 RAWQESPEGNKMLDFRKSLPSFKEKERLLQAIARNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRIS 310 (913)
Q Consensus 231 ~~~~~~~~~~~l~~~r~~lP~~~~q~~il~~i~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~L 310 (913)
..+..+..+++++++|.+||+++++++|++++.++++++|+|+||||||||+||+|++..+.++ +.|+|+||||||+.
T Consensus 154 ~~~~~s~~~~~~~~~R~~LPa~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~--~~~~IicTQPRRIs 231 (924)
T KOG0920|consen 154 SEPKKSESYKEMLRFRESLPAYKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESG--AACNIICTQPRRIS 231 (924)
T ss_pred chhhhhhHHHHHHHHHHhCccHHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcC--CCCeEEecCCchHH
Confidence 5567789999999999999999999999999999999999999999999999999999988766 78999999999999
Q ss_pred HHHHHHHHHHHhCCCcccEeeeEEeccccCCCCceEEEEecHHHHHHHhcCCCCCCceEEEeccccccCcchHHHHHHHH
Q 002521 311 AMAVSERVSAERGEPLGETVGYKVRLEGMKGKNTHLLFCTSGILLRRLLSDHNLNGVTHVFVDEIHERGMNEDFLLIVLK 390 (913)
Q Consensus 311 a~qva~rv~~~~~~~~g~~vGy~v~~e~~~~~~~~Ivv~T~g~Ll~~l~~~~~L~~~s~IIIDEaHer~~~~d~ll~llk 390 (913)
|+++|+||+.|+++..|..|||++|.++..+..+.++|||+|+|++.|..++.+.+++|||+||+|||++++|+++.++|
T Consensus 232 AIsvAeRVa~ER~~~~g~~VGYqvrl~~~~s~~t~L~fcTtGvLLr~L~~~~~l~~vthiivDEVHER~i~~DflLi~lk 311 (924)
T KOG0920|consen 232 AISVAERVAKERGESLGEEVGYQVRLESKRSRETRLLFCTTGVLLRRLQSDPTLSGVTHIIVDEVHERSINTDFLLILLK 311 (924)
T ss_pred HHHHHHHHHHHhccccCCeeeEEEeeecccCCceeEEEecHHHHHHHhccCcccccCceeeeeeEEEccCCcccHHHHHH
Confidence 99999999999999999999999999999998999999999999999999999999999999999999999999999999
Q ss_pred HhCccCccceEEEeccccCHHHHHhhhCCCCeeccCCccccceeeehhhHHhhhcccccccccccchhhhhHHHHhhhhc
Q 002521 391 DLLPRRRDLRLILMSATLNAELFSNYFGGAPTIHIPGFTYPVQAHFLEDVLEMTGYKLTSLNQVDDYGQEKLWKTQRQLL 470 (913)
Q Consensus 391 ~ll~~~~~~kiIlmSATl~~~~~~~yf~~~~~i~i~g~~~pv~~~yl~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (913)
.++..+|++|+|+||||++++.|+.||+++|+++|+|++|||..+|++|++..++|........ .+.+.
T Consensus 312 ~lL~~~p~LkvILMSAT~dae~fs~YF~~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~--~~~~~--------- 380 (924)
T KOG0920|consen 312 DLLPRNPDLKVILMSATLDAELFSDYFGGCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSAR--SGPER--------- 380 (924)
T ss_pred HHhhhCCCceEEEeeeecchHHHHHHhCCCceEeecCCCcchHHHHHHHHHHHhcccccccccc--ccccc---------
Confidence 9999999999999999999999999999999999999999999999999999998876644322 00000
Q ss_pred hhhhhhhHHHHHHHHHhhccccccchhhhhhhccccccccchhhHHHHHHHHhhhcCCCcEEEEcCChHHHHHHHHHHHc
Q 002521 471 PRKRKNQITALVEDALHKSNFENYSSRARDSLASWTADCIGFNLIEAVLCHICRKECPGAVLVFMTGWEDISCLRDQLKS 550 (913)
Q Consensus 471 ~~~~~~~i~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~li~~ll~~i~~~~~~g~iLVF~~~~~~i~~l~~~L~~ 550 (913)
. .+.. ..+..|.++ ++++++..++++|+.....|.||||+||+++|..+.+.|..
T Consensus 381 -----~--------~~~~-----------~~~~~~~~~-id~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~ 435 (924)
T KOG0920|consen 381 -----S--------QLRL-----------ARLKLWEPE-IDYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEV 435 (924)
T ss_pred -----C--------cccc-----------ccchhcccc-ccHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhh
Confidence 0 0000 002223333 89999999999999998899999999999999999999998
Q ss_pred CCCCCCCCCeEEEEecCCCChHHHHHHhccCCCCccEEEEecchhhhcCCCCCeEEEEeCCCCcceeecCCCCCCcCCcc
Q 002521 551 HPLLGDPNRVLLLTCHGSMPTSEQKFIFEKAPPNIRKIVLATNMAEASITINDIVFVVDCGKAKETTYDALNNTPCLLPS 630 (913)
Q Consensus 551 ~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~g~~kVLVATniae~GIdIp~v~~VId~g~~k~~~yd~~~~~~~l~~~ 630 (913)
+..+.+..++.+.++||.|+..+|+.||...+.|.+|||+||||||+|||||||.||||+|+.|++.||+..++.++...
T Consensus 436 ~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g~RKIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~ 515 (924)
T KOG0920|consen 436 NLPFADSLKFAILPLHSSIPSEEQQAVFKRPPKGTRKIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLS 515 (924)
T ss_pred ccccccccceEEEeccccCChHHHHHhcCCCCCCcchhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhhee
Confidence 77676667899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCHhhHHHHhcccCCCCCcEEEEecChhhHHhhhh-CCCCcccccChhhHHHHHhhcCCCCHHHHHHhccCCCchHHHH
Q 002521 631 WISQASARQRRGRAGRVQPGQCYHLYPRCVYEAFAE-YQLPELLRTPLNSLCLQIKSLQVGSIGEFLSAALQPPEPLAVQ 709 (913)
Q Consensus 631 ~iSka~~~QR~GRAGR~~~G~c~~L~t~~~~~~l~~-~~~pEi~r~~L~~~~L~lk~l~~~~~~~fl~~~l~pP~~~~i~ 709 (913)
|+|++++.||+|||||+++|.||+||++..|+.+.. +++|||+|.+|+++||++|.++.+++..||+.+++||+..++.
T Consensus 516 wvSkAna~QR~GRAGRv~~G~cy~L~~~~~~~~~~~~~q~PEilR~pL~~l~L~iK~l~~~~~~~fLskaldpP~~~~v~ 595 (924)
T KOG0920|consen 516 WVSKANAKQRRGRAGRVRPGICYHLYTRSRYEKLMLAYQLPEILRTPLEELCLHIKVLEQGSIKAFLSKALDPPPADAVD 595 (924)
T ss_pred eccccchHHhcccccCccCCeeEEeechhhhhhcccccCChHHHhChHHHhhheeeeccCCCHHHHHHHhcCCCChHHHH
Confidence 999999999999999999999999999999999887 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCCCCcccccccccccCCChHHHHHHHHhhhccChHHHHHHHhhccCCCCCcCChhhHHHHHHHhccc
Q 002521 710 NAVDFLKRIGALDEKENLTNLGKFLSMLPVDPKLGKMLVMGAIFRCFDPVLTIVSGLSVRDPFLLPQEKKNLAEIAKSRF 789 (913)
Q Consensus 710 ~al~~L~~~gald~~~~lT~lG~~ls~lpl~p~~~k~ll~~~~~~cl~~~l~i~a~ls~~~~f~~p~~~~~~~~~~~~~~ 789 (913)
.|++.|..+|||+.+++||+||++++.||+||++|||+++|++|+|+||+++|||+|++++||+.|.++++.+++++..|
T Consensus 596 ~a~~~L~~igaL~~~e~LT~LG~~la~lPvd~~igK~ll~g~if~cLdp~l~iaa~Ls~k~PF~~~~~~~~~~~~~~~~~ 675 (924)
T KOG0920|consen 596 LAIERLKQIGALDESEELTPLGLHLASLPVDVRIGKLLLFGAIFGCLDPALTIAAALSFKSPFVSPLGKREEADKAKKLL 675 (924)
T ss_pred HHHHHHHHhccccCcccchHHHHHHHhCCCccccchhheehhhccccchhhhHHHHhccCCCcccCCCchhHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhhHHHHHHHHHHHHHHhhc--CCcHHHHHHhccChhhHHHHHHHHHHHHHHHHHcCCCCCC-------CCCCCCC
Q 002521 790 SAKDYSDHMALVRAYEGWKDAERE--GSGYEYCWRNFLSAQTLQAIHSLRKQFTFILRDAGLLDED-------GGNNKLS 860 (913)
Q Consensus 790 ~~~~~sDhl~ll~af~~w~~~~~~--~~~~~~c~~~~l~~~~l~~~~~~r~ql~~~l~~~~l~~~~-------~~~~~~s 860 (913)
+.+..|||||+++||++|++.... ...++||++||||..+|+++..+|.|+...|.+.|++..+ ..+|.++
T Consensus 676 ~~~~~SD~la~~~ay~~w~~~~~~~~~~~~~fc~~~fLs~~~l~~i~~l~~q~~~~l~~~g~~~~~~~~~~~~~~~n~~s 755 (924)
T KOG0920|consen 676 ALDSISDHLAVVRAYAGWREILRSGPSAEKDFCEENFLSSNTLQEISSLRVQFLELLSDIGLIPISSTAALTDSECNHNS 755 (924)
T ss_pred ccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhcccccCCcccccCchhhhhcC
Confidence 877789999999999999998876 4678999999999999999999999999999999998753 5678889
Q ss_pred CCHHHHHHHHHHhcccccccccc---cCCcccEEeecCCeEEEcCCCccCcCC
Q 002521 861 HNQSLVRAVICSGLFPGITSVVH---RETSMSFKTMDDGQVFLYAVSVQVIVS 910 (913)
Q Consensus 861 ~~~~li~~~l~aGl~pnva~~~~---~~~~~~y~t~~~~~v~iHPsSv~~~~~ 910 (913)
.++++++++||||||||++.+.. ..+...|.|..+++|+|||+|||.+..
T Consensus 756 ~~~~~iravl~a~lyP~i~~~~~~~~~~~~~~~~~~~~~~v~i~~~sv~~~~~ 808 (924)
T KOG0920|consen 756 QNPELVRAVLCAGLYPNIAFVRRMEPKSKSVTFVTKADGRVIIHPSSVNEQST 808 (924)
T ss_pred CCHHHHHHHHhccCCCceeeeecccCCcCcceeecCCceeEEEecchhhcccc
Confidence 99999999999999999999875 555667888888999999999998654
No 2
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.7e-120 Score=1015.63 Aligned_cols=591 Identities=38% Similarity=0.666 Sum_probs=543.5
Q ss_pred CchhhhHHhhhcCCCcHHHHHHHHHHHHcCCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHH
Q 002521 236 SPEGNKMLDFRKSLPSFKEKERLLQAIARNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVS 315 (913)
Q Consensus 236 ~~~~~~l~~~r~~lP~~~~q~~il~~i~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva 315 (913)
......+.+.|..||+++++.+|+.++.+|+++||.|+||||||||+||++++..+. ..++|.||||||++|+++|
T Consensus 37 ~~~~~~i~~qR~~LPI~~~r~~il~~ve~nqvlIviGeTGsGKSTQipQyL~eaG~~----~~g~I~~TQPRRVAavslA 112 (674)
T KOG0922|consen 37 KSTNLSIQEQRESLPIYKYRDQILYAVEDNQVLIVIGETGSGKSTQIPQYLAEAGFA----SSGKIACTQPRRVAAVSLA 112 (674)
T ss_pred cccccCHHHhhccCCHHHHHHHHHHHHHHCCEEEEEcCCCCCccccHhHHHHhcccc----cCCcEEeecCchHHHHHHH
Confidence 345567788999999999999999999999999999999999999999999986543 3346999999999999999
Q ss_pred HHHHHHhCCCcccEeeeEEeccccCCCCceEEEEecHHHHHHHhcCCCCCCceEEEeccccccCcchHHHHHHHHHhCcc
Q 002521 316 ERVSAERGEPLGETVGYKVRLEGMKGKNTHLLFCTSGILLRRLLSDHNLNGVTHVFVDEIHERGMNEDFLLIVLKDLLPR 395 (913)
Q Consensus 316 ~rv~~~~~~~~g~~vGy~v~~e~~~~~~~~Ivv~T~g~Ll~~l~~~~~L~~~s~IIIDEaHer~~~~d~ll~llk~ll~~ 395 (913)
+||+.|+|..+|..|||.+||++..+..|.|.|+|+|+|+|.+..|+.|++|++|||||||||++++|+++++||+++++
T Consensus 113 ~RVAeE~~~~lG~~VGY~IRFed~ts~~TrikymTDG~LLRE~l~Dp~LskYsvIIlDEAHERsl~TDiLlGlLKki~~~ 192 (674)
T KOG0922|consen 113 KRVAEEMGCQLGEEVGYTIRFEDSTSKDTRIKYMTDGMLLREILKDPLLSKYSVIILDEAHERSLHTDILLGLLKKILKK 192 (674)
T ss_pred HHHHHHhCCCcCceeeeEEEecccCCCceeEEEecchHHHHHHhcCCccccccEEEEechhhhhhHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccceEEEeccccCHHHHHhhhCCCCeeccCCccccceeeehhhHHhhhcccccccccccchhhhhHHHHhhhhchhhhh
Q 002521 396 RRDLRLILMSATLNAELFSNYFGGAPTIHIPGFTYPVQAHFLEDVLEMTGYKLTSLNQVDDYGQEKLWKTQRQLLPRKRK 475 (913)
Q Consensus 396 ~~~~kiIlmSATl~~~~~~~yf~~~~~i~i~g~~~pv~~~yl~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (913)
++++|+|+||||++++.|++||+++|++.|+||+|||+++|+...
T Consensus 193 R~~LklIimSATlda~kfS~yF~~a~i~~i~GR~fPVei~y~~~p----------------------------------- 237 (674)
T KOG0922|consen 193 RPDLKLIIMSATLDAEKFSEYFNNAPILTIPGRTFPVEILYLKEP----------------------------------- 237 (674)
T ss_pred CCCceEEEEeeeecHHHHHHHhcCCceEeecCCCCceeEEeccCC-----------------------------------
Confidence 999999999999999999999999999999999999999997521
Q ss_pred hhHHHHHHHHHhhccccccchhhhhhhccccccccchhhHHHHHHHHhhhcCCCcEEEEcCChHHHHHHHHHHHcCC-CC
Q 002521 476 NQITALVEDALHKSNFENYSSRARDSLASWTADCIGFNLIEAVLCHICRKECPGAVLVFMTGWEDISCLRDQLKSHP-LL 554 (913)
Q Consensus 476 ~~i~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~li~~ll~~i~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~-~~ 554 (913)
..+++++++. .+..|+.++++|.||||++|.++|+.+++.|.+.. ..
T Consensus 238 --~~dYv~a~~~------------------------------tv~~Ih~~E~~GDILvFLtGqeEIe~~~~~l~e~~~~~ 285 (674)
T KOG0922|consen 238 --TADYVDAALI------------------------------TVIQIHLTEPPGDILVFLTGQEEIEAACELLRERAKSL 285 (674)
T ss_pred --chhhHHHHHH------------------------------HHHHHHccCCCCCEEEEeCCHHHHHHHHHHHHHHhhhc
Confidence 1233333332 35667888999999999999999999999998642 11
Q ss_pred CCCCCeEEEEecCCCChHHHHHHhccCCCCccEEEEecchhhhcCCCCCeEEEEeCCCCcceeecCCCCCCcCCccccCH
Q 002521 555 GDPNRVLLLTCHGSMPTSEQKFIFEKAPPNIRKIVLATNMAEASITINDIVFVVDCGKAKETTYDALNNTPCLLPSWISQ 634 (913)
Q Consensus 555 ~~~~~~~v~~lHs~l~~~er~~v~~~f~~g~~kVLVATniae~GIdIp~v~~VId~g~~k~~~yd~~~~~~~l~~~~iSk 634 (913)
.+.....+.++||.|+.++|.+||+..+.|.+|||+||||||++||||+|.||||+|+.|.+.|++.+++..|...|||+
T Consensus 286 ~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~~g~~~L~v~~ISk 365 (674)
T KOG0922|consen 286 PEDCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNPRTGLDSLIVVPISK 365 (674)
T ss_pred cccCcceeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceEEEeeccccCccceeEEechH
Confidence 21112378999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhcccCCCCCcEEEEecChhhHHhhhhCCCCcccccChhhHHHHHhhcCCCCHHHHHHhccCCCchHHHHHHHHH
Q 002521 635 ASARQRRGRAGRVQPGQCYHLYPRCVYEAFAEYQLPELLRTPLNSLCLQIKSLQVGSIGEFLSAALQPPEPLAVQNAVDF 714 (913)
Q Consensus 635 a~~~QR~GRAGR~~~G~c~~L~t~~~~~~l~~~~~pEi~r~~L~~~~L~lk~l~~~~~~~fl~~~l~pP~~~~i~~al~~ 714 (913)
+++.||+|||||.+||+|||||++.+|+.|++.+.|||+|++|..++|++|++|++++..| .|++||+++++..|++.
T Consensus 366 asA~QRaGRAGRt~pGkcyRLYte~~~~~~~~~~~PEI~R~~Ls~~vL~Lkalgi~d~l~F--~f~d~P~~~~l~~AL~~ 443 (674)
T KOG0922|consen 366 ASANQRAGRAGRTGPGKCYRLYTESAYDKMPLQTVPEIQRVNLSSAVLQLKALGINDPLRF--PFIDPPPPEALEEALEE 443 (674)
T ss_pred HHHhhhcccCCCCCCceEEEeeeHHHHhhcccCCCCceeeechHHHHHHHHhcCCCCcccC--CCCCCCChHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred HHHcCCCCCCCCccc-ccccccccCCChHHHHHHHHhhhccChHHHHHHHhhccCCCCCcCChhhHHH-HHHHhcccCCC
Q 002521 715 LKRIGALDEKENLTN-LGKFLSMLPVDPKLGKMLVMGAIFRCFDPVLTIVSGLSVRDPFLLPQEKKNL-AEIAKSRFSAK 792 (913)
Q Consensus 715 L~~~gald~~~~lT~-lG~~ls~lpl~p~~~k~ll~~~~~~cl~~~l~i~a~ls~~~~f~~p~~~~~~-~~~~~~~~~~~ 792 (913)
|..+||||++|.||. +|+.|+.+|++|.++|||+.+..+||++++++|||+||+.++|..|.+++.. +...|.+|. +
T Consensus 444 L~~lgald~~g~lt~p~G~~ma~~Pl~p~lsk~ll~s~~~gc~~e~l~i~a~Lsv~~~f~~p~~~~~~~a~~~~~kf~-~ 522 (674)
T KOG0922|consen 444 LYSLGALDDRGKLTSPLGRQMAELPLEPHLSKMLLKSSELGCSEEILTIAAMLSVQSVFSRPKDKKAEDADRKRAKFA-N 522 (674)
T ss_pred HHhcCcccCcCCcCchHHhhhhhcCCCcchhhhhhhccccCCcchhhhheeeeeccceecCccchhhhhhhHHHHhhc-C
Confidence 999999999999999 9999999999999999999999999999999999999999999999988776 888999998 7
Q ss_pred ChhhHHHHHHHHHHHHHHhhcCCcHHHHHHhccChhhHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHH
Q 002521 793 DYSDHMALVRAYEGWKDAEREGSGYEYCWRNFLSAQTLQAIHSLRKQFTFILRDAGLLDEDGGNNKLSHNQSLVRAVICS 872 (913)
Q Consensus 793 ~~sDhl~ll~af~~w~~~~~~~~~~~~c~~~~l~~~~l~~~~~~r~ql~~~l~~~~l~~~~~~~~~~s~~~~li~~~l~a 872 (913)
..+||++++++|+.|... +...+||++|||+.++|+.+.++|+||..++.+.++...+ ...|.+.|++|||+
T Consensus 523 ~eGDh~tlL~vy~~~~~~---~~~~~wC~en~i~~r~l~~a~~ir~QL~~i~~~~~~~~~s-----~~~d~~~i~k~l~a 594 (674)
T KOG0922|consen 523 PEGDHLTLLNVYESWKEN---GTSKKWCKENFINARSLKRAKDIRKQLRRILDKFGLPVSS-----CGGDMEKIRKCLCA 594 (674)
T ss_pred cccCHHHHHHHHHHHHhc---CChhhHHHHhcccHHHHHHHHHHHHHHHHHHHHcCCCccC-----CCCCHHHHHHHHHH
Confidence 889999999999999874 4668999999999999999999999999999888876532 35677899999999
Q ss_pred hcccccccccccCCcccEEeecCCe-EEEcCCCccCcCCC
Q 002521 873 GLFPGITSVVHRETSMSFKTMDDGQ-VFLYAVSVQVIVSN 911 (913)
Q Consensus 873 Gl~pnva~~~~~~~~~~y~t~~~~~-v~iHPsSv~~~~~~ 911 (913)
|||.|+|.+... .+ |+|+.+++ |+||||||+++.++
T Consensus 595 Gff~N~A~~~~~--~~-Yrti~~~~~v~IHPSS~l~~~~p 631 (674)
T KOG0922|consen 595 GFFRNVAERDYQ--DG-YRTIRGGQPVYIHPSSVLFRRKP 631 (674)
T ss_pred HHHHHHHHhhcC--CC-eEEccCCcEEEEechHHhhcCCC
Confidence 999999987632 23 99988766 89999999998873
No 3
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.6e-116 Score=965.63 Aligned_cols=584 Identities=38% Similarity=0.614 Sum_probs=539.2
Q ss_pred hhHHhhhcCCCcHHHHHHHHHHHHcCCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHHH
Q 002521 240 NKMLDFRKSLPSFKEKERLLQAIARNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVS 319 (913)
Q Consensus 240 ~~l~~~r~~lP~~~~q~~il~~i~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv~ 319 (913)
+.+.++|..||++..+++++..|..|++|||.|+||||||||++||+++. +.+..+.|.||||||.+|+++|++++
T Consensus 346 k~i~eqrq~LPvf~~R~~ll~~ir~n~vvvivgETGSGKTTQl~QyL~ed----GY~~~GmIGcTQPRRvAAiSVAkrVa 421 (1042)
T KOG0924|consen 346 KSIREQRQYLPVFACRDQLLSVIRENQVVVIVGETGSGKTTQLAQYLYED----GYADNGMIGCTQPRRVAAISVAKRVA 421 (1042)
T ss_pred chHHHHHhhcchHHHHHHHHHHHhhCcEEEEEecCCCCchhhhHHHHHhc----ccccCCeeeecCchHHHHHHHHHHHH
Confidence 45778999999999999999999999999999999999999999999985 45556799999999999999999999
Q ss_pred HHhCCCcccEeeeEEeccccCCCCceEEEEecHHHHHHHhcCCCCCCceEEEeccccccCcchHHHHHHHHHhCccCccc
Q 002521 320 AERGEPLGETVGYKVRLEGMKGKNTHLLFCTSGILLRRLLSDHNLNGVTHVFVDEIHERGMNEDFLLIVLKDLLPRRRDL 399 (913)
Q Consensus 320 ~~~~~~~g~~vGy~v~~e~~~~~~~~Ivv~T~g~Ll~~l~~~~~L~~~s~IIIDEaHer~~~~d~ll~llk~ll~~~~~~ 399 (913)
.|+|..+|..|||.+||++.+++.|.|-|+|.|+||+....+..|..|++||+||||||++++|++++++|.++..+.++
T Consensus 422 ~EM~~~lG~~VGYsIRFEdvT~~~T~IkymTDGiLLrEsL~d~~L~kYSviImDEAHERslNtDilfGllk~~larRrdl 501 (1042)
T KOG0924|consen 422 EEMGVTLGDTVGYSIRFEDVTSEDTKIKYMTDGILLRESLKDRDLDKYSVIIMDEAHERSLNTDILFGLLKKVLARRRDL 501 (1042)
T ss_pred HHhCCccccccceEEEeeecCCCceeEEEeccchHHHHHhhhhhhhheeEEEechhhhcccchHHHHHHHHHHHHhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEeccccCHHHHHhhhCCCCeeccCCccccceeeehhhHHhhhcccccccccccchhhhhHHHHhhhhchhhhhhhHH
Q 002521 400 RLILMSATLNAELFSNYFGGAPTIHIPGFTYPVQAHFLEDVLEMTGYKLTSLNQVDDYGQEKLWKTQRQLLPRKRKNQIT 479 (913)
Q Consensus 400 kiIlmSATl~~~~~~~yf~~~~~i~i~g~~~pv~~~yl~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 479 (913)
|+|++|||++++.|++|||+||.+.||||+|||++.|... ...
T Consensus 502 KliVtSATm~a~kf~nfFgn~p~f~IpGRTyPV~~~~~k~-------------------------------------p~e 544 (1042)
T KOG0924|consen 502 KLIVTSATMDAQKFSNFFGNCPQFTIPGRTYPVEIMYTKT-------------------------------------PVE 544 (1042)
T ss_pred eEEEeeccccHHHHHHHhCCCceeeecCCccceEEEeccC-------------------------------------chH
Confidence 9999999999999999999999999999999999998642 123
Q ss_pred HHHHHHHhhccccccchhhhhhhccccccccchhhHHHHHHHHhhhcCCCcEEEEcCChHHHHHHHHHHHcCC---CCCC
Q 002521 480 ALVEDALHKSNFENYSSRARDSLASWTADCIGFNLIEAVLCHICRKECPGAVLVFMTGWEDISCLRDQLKSHP---LLGD 556 (913)
Q Consensus 480 ~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~li~~ll~~i~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~---~~~~ 556 (913)
++++.++.. ...|+.....|.||||++|.++++..+..+.... ....
T Consensus 545 DYVeaavkq------------------------------~v~Ihl~~~~GdilIfmtGqediE~t~~~i~~~l~ql~~~~ 594 (1042)
T KOG0924|consen 545 DYVEAAVKQ------------------------------AVQIHLSGPPGDILIFMTGQEDIECTCDIIKEKLEQLDSAP 594 (1042)
T ss_pred HHHHHHHhh------------------------------heEeeccCCCCCEEEecCCCcchhHHHHHHHHHHHhhhcCC
Confidence 444444432 2234445678999999999999998887776421 1112
Q ss_pred CCCeEEEEecCCCChHHHHHHhccCCCCccEEEEecchhhhcCCCCCeEEEEeCCCCcceeecCCCCCCcCCccccCHhh
Q 002521 557 PNRVLLLTCHGSMPTSEQKFIFEKAPPNIRKIVLATNMAEASITINDIVFVVDCGKAKETTYDALNNTPCLLPSWISQAS 636 (913)
Q Consensus 557 ~~~~~v~~lHs~l~~~er~~v~~~f~~g~~kVLVATniae~GIdIp~v~~VId~g~~k~~~yd~~~~~~~l~~~~iSka~ 636 (913)
..++.|+++++.||.+-|.++|+..+.|.+||||||||||+++|||++.||||+|+.|.+.|++..+++.|...|||+|+
T Consensus 595 ~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~An 674 (1042)
T KOG0924|consen 595 TTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQAN 674 (1042)
T ss_pred CCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCceeeeecccccccceeEEEechhcc
Confidence 23789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcccCCCCCcEEEEecChhhHH-hhhhCCCCcccccChhhHHHHHhhcCCCCHHHHHHhccCCCchHHHHHHHHHH
Q 002521 637 ARQRRGRAGRVQPGQCYHLYPRCVYE-AFAEYQLPELLRTPLNSLCLQIKSLQVGSIGEFLSAALQPPEPLAVQNAVDFL 715 (913)
Q Consensus 637 ~~QR~GRAGR~~~G~c~~L~t~~~~~-~l~~~~~pEi~r~~L~~~~L~lk~l~~~~~~~fl~~~l~pP~~~~i~~al~~L 715 (913)
+.||+|||||++||.||+|||+..|. .|.+.++|||+|++|.+++|.+|+++++++..| .|+|||+.+.+.+++..|
T Consensus 675 A~QRaGRAGRt~pG~cYRlYTe~ay~~eml~stvPEIqRTNl~nvVLlLkslgV~dll~F--dFmD~Pped~~~~sly~L 752 (1042)
T KOG0924|consen 675 ADQRAGRAGRTGPGTCYRLYTEDAYKNEMLPSTVPEIQRTNLSNVVLLLKSLGVDDLLKF--DFMDPPPEDNLLNSLYQL 752 (1042)
T ss_pred chhhccccCCCCCcceeeehhhhHHHhhcccCCCchhhhcchhhHHHHHHhcChhhhhCC--CcCCCCHHHHHHHHHHHH
Confidence 99999999999999999999998885 699999999999999999999999999999999 999999999999999999
Q ss_pred HHcCCCCCCCCcccccccccccCCChHHHHHHHHhhhccChHHHHHHHhhccCCCCCcCChhhHHHHHHHhcccCCCChh
Q 002521 716 KRIGALDEKENLTNLGKFLSMLPVDPKLGKMLVMGAIFRCFDPVLTIVSGLSVRDPFLLPQEKKNLAEIAKSRFSAKDYS 795 (913)
Q Consensus 716 ~~~gald~~~~lT~lG~~ls~lpl~p~~~k~ll~~~~~~cl~~~l~i~a~ls~~~~f~~p~~~~~~~~~~~~~~~~~~~s 795 (913)
-.+|||+..|.||++|+.|++||+||.++||||.++.+||.+++|+|+++||+...|+.|.++.+.+..+|.+|. ...|
T Consensus 753 w~LGAl~~~g~LT~lG~~MvefpLDP~lsKmll~a~~~Gc~dEilsIvSmLSvp~VF~rpker~eead~ar~Kf~-~~~s 831 (1042)
T KOG0924|consen 753 WTLGALDNTGQLTPLGRKMVEFPLDPPLSKMLLMAARMGCSDEILSIVSMLSVPAVFYRPKEREEEADAAREKFQ-VPES 831 (1042)
T ss_pred HHhhccccCCccchhhHHhhhCCCCchHHHHHHHHhccCcHHHHHHHHHHhcccceeeccccchhhhhhHHhhhc-CCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998 7899
Q ss_pred hHHHHHHHHHHHHHHhhcCCcHHHHHHhccChhhHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHhcc
Q 002521 796 DHMALVRAYEGWKDAEREGSGYEYCWRNFLSAQTLQAIHSLRKQFTFILRDAGLLDEDGGNNKLSHNQSLVRAVICSGLF 875 (913)
Q Consensus 796 Dhl~ll~af~~w~~~~~~~~~~~~c~~~~l~~~~l~~~~~~r~ql~~~l~~~~l~~~~~~~~~~s~~~~li~~~l~aGl~ 875 (913)
|||++||+|++|++.+ ....||.+|+|+.++|+.+.++|.||+.+|++.+++..+ +.+|++|++|||+|+|
T Consensus 832 DhLTlLNVf~qw~~~~---~~~~WCnd~~l~~kaL~~arevR~ql~~il~~l~~~l~S------~~dwdivrKCIcs~~f 902 (1042)
T KOG0924|consen 832 DHLTLLNVFNQWRKNK---YSSMWCNDHYLQVKALKKAREVRRQLLEILKQLKLPLIS------SDDWDIVRKCICSAYF 902 (1042)
T ss_pred chhhHHHHHHHHHhcC---CchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHcCCCccc------CchHHHHHHHHHHHHH
Confidence 9999999999998764 567999999999999999999999999999999997543 3799999999999999
Q ss_pred cccccccccCCcccEEeecCCe-EEEcCCCccCcC
Q 002521 876 PGITSVVHRETSMSFKTMDDGQ-VFLYAVSVQVIV 909 (913)
Q Consensus 876 pnva~~~~~~~~~~y~t~~~~~-v~iHPsSv~~~~ 909 (913)
-|+|++. +.+.|.++..+. ++||||||+++.
T Consensus 903 hn~Arlk---g~g~YV~~~tg~~c~lHPsS~L~g~ 934 (1042)
T KOG0924|consen 903 HNAARLK---GIGEYVNLSTGIPCHLHPSSVLHGL 934 (1042)
T ss_pred HHHHHhc---cCceEEEccCCcceeecchHhhhcC
Confidence 9999774 345788888776 899999999986
No 4
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.2e-115 Score=958.26 Aligned_cols=588 Identities=36% Similarity=0.604 Sum_probs=534.8
Q ss_pred hhHHhhhcCCCcHHHHHHHHHHHHcCCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHHH
Q 002521 240 NKMLDFRKSLPSFKEKERLLQAIARNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVS 319 (913)
Q Consensus 240 ~~l~~~r~~lP~~~~q~~il~~i~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv~ 319 (913)
..+.+.|+.||+|.++++++.++..++++||.|+||||||||+|||+.+..+..+ ..+|-||||||++|+++|.||+
T Consensus 255 ~~iee~RksLPVy~ykdell~av~e~QVLiI~GeTGSGKTTQiPQyL~EaGytk~---gk~IgcTQPRRVAAmSVAaRVA 331 (902)
T KOG0923|consen 255 ESIEEVRKSLPVYPYKDELLKAVKEHQVLIIVGETGSGKTTQIPQYLYEAGYTKG---GKKIGCTQPRRVAAMSVAARVA 331 (902)
T ss_pred HHHHHHHhcCCchhhHHHHHHHHHhCcEEEEEcCCCCCccccccHHHHhcccccC---CceEeecCcchHHHHHHHHHHH
Confidence 4566789999999999999999999999999999999999999999999765432 2259999999999999999999
Q ss_pred HHhCCCcccEeeeEEeccccCCCCceEEEEecHHHHHHHhcCCCCCCceEEEeccccccCcchHHHHHHHHHhCccCccc
Q 002521 320 AERGEPLGETVGYKVRLEGMKGKNTHLLFCTSGILLRRLLSDHNLNGVTHVFVDEIHERGMNEDFLLIVLKDLLPRRRDL 399 (913)
Q Consensus 320 ~~~~~~~g~~vGy~v~~e~~~~~~~~Ivv~T~g~Ll~~l~~~~~L~~~s~IIIDEaHer~~~~d~ll~llk~ll~~~~~~ 399 (913)
+++|..+|..|||+++|+++++..|.|.|+|+|+|++.+..++.|..|++|||||||||.+++|+|.++++++.+.||++
T Consensus 332 ~EMgvkLG~eVGYsIRFEdcTSekTvlKYMTDGmLlREfL~epdLasYSViiiDEAHERTL~TDILfgLvKDIar~RpdL 411 (902)
T KOG0923|consen 332 EEMGVKLGHEVGYSIRFEDCTSEKTVLKYMTDGMLLREFLSEPDLASYSVIIVDEAHERTLHTDILFGLVKDIARFRPDL 411 (902)
T ss_pred HHhCcccccccceEEEeccccCcceeeeeecchhHHHHHhccccccceeEEEeehhhhhhhhhhHHHHHHHHHHhhCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEeccccCHHHHHhhhCCCCeeccCCccccceeeehhhHHhhhcccccccccccchhhhhHHHHhhhhchhhhhhhHH
Q 002521 400 RLILMSATLNAELFSNYFGGAPTIHIPGFTYPVQAHFLEDVLEMTGYKLTSLNQVDDYGQEKLWKTQRQLLPRKRKNQIT 479 (913)
Q Consensus 400 kiIlmSATl~~~~~~~yf~~~~~i~i~g~~~pv~~~yl~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 479 (913)
|++++|||++++.|+.||+++|++.+||+.|||+++|.... -.
T Consensus 412 KllIsSAT~DAekFS~fFDdapIF~iPGRRyPVdi~Yt~~P-------------------------------------EA 454 (902)
T KOG0923|consen 412 KLLISSATMDAEKFSAFFDDAPIFRIPGRRYPVDIFYTKAP-------------------------------------EA 454 (902)
T ss_pred eEEeeccccCHHHHHHhccCCcEEeccCcccceeeecccCC-------------------------------------ch
Confidence 99999999999999999999999999999999999996421 11
Q ss_pred HHHHHHHhhccccccchhhhhhhccccccccchhhHHHHHHHHhhhcCCCcEEEEcCChHHHHHHHHHHHcCC--CCCCC
Q 002521 480 ALVEDALHKSNFENYSSRARDSLASWTADCIGFNLIEAVLCHICRKECPGAVLVFMTGWEDISCLRDQLKSHP--LLGDP 557 (913)
Q Consensus 480 ~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~li~~ll~~i~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~--~~~~~ 557 (913)
++++.++. .+..|+...+.|.||||+.+.++|+.+.+.|.... +....
T Consensus 455 dYldAai~------------------------------tVlqIH~tqp~GDILVFltGQeEIEt~~e~l~~~~~~LGski 504 (902)
T KOG0923|consen 455 DYLDAAIV------------------------------TVLQIHLTQPLGDILVFLTGQEEIETVKENLKERCRRLGSKI 504 (902)
T ss_pred hHHHHHHh------------------------------hheeeEeccCCccEEEEeccHHHHHHHHHHHHHHHHHhcccc
Confidence 23333322 14456667788999999999999999888886531 12223
Q ss_pred CCeEEEEecCCCChHHHHHHhccCCCCccEEEEecchhhhcCCCCCeEEEEeCCCCcceeecCCCCCCcCCccccCHhhH
Q 002521 558 NRVLLLTCHGSMPTSEQKFIFEKAPPNIRKIVLATNMAEASITINDIVFVVDCGKAKETTYDALNNTPCLLPSWISQASA 637 (913)
Q Consensus 558 ~~~~v~~lHs~l~~~er~~v~~~f~~g~~kVLVATniae~GIdIp~v~~VId~g~~k~~~yd~~~~~~~l~~~~iSka~~ 637 (913)
..+.++++|+.||.+.|.+||+..++|.+|||+||||||++|||++|.||||.|++|.+.|++.+|+.+|...||||+++
T Consensus 505 ~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf~K~nsynprtGmesL~v~piSKAsA 584 (902)
T KOG0923|consen 505 RELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPGFVKQNSYNPRTGMESLLVTPISKASA 584 (902)
T ss_pred ceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecCccccccCcCCCcCceeEEEeeechhhh
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcccCCCCCcEEEEecChhhHHh-hhhCCCCcccccChhhHHHHHhhcCCCCHHHHHHhccCCCchHHHHHHHHHHH
Q 002521 638 RQRRGRAGRVQPGQCYHLYPRCVYEA-FAEYQLPELLRTPLNSLCLQIKSLQVGSIGEFLSAALQPPEPLAVQNAVDFLK 716 (913)
Q Consensus 638 ~QR~GRAGR~~~G~c~~L~t~~~~~~-l~~~~~pEi~r~~L~~~~L~lk~l~~~~~~~fl~~~l~pP~~~~i~~al~~L~ 716 (913)
.||+|||||++||+|||||+...|.. +.+.+.|||+|++|.+++|.+|+||+.++..| +|++||+.+++..||+.|+
T Consensus 585 ~QRaGRAGRtgPGKCfRLYt~~aY~~eLE~~t~PEIqRtnL~nvVL~LkSLGI~Dl~~F--dFmDpPp~etL~~aLE~Ly 662 (902)
T KOG0923|consen 585 NQRAGRAGRTGPGKCFRLYTAWAYEHELEEMTVPEIQRTNLGNVVLLLKSLGIHDLIHF--DFLDPPPTETLLKALEQLY 662 (902)
T ss_pred hhhccccCCCCCCceEEeechhhhhhhhccCCCcceeeccchhHHHHHHhcCcchhccc--ccCCCCChHHHHHHHHHHH
Confidence 99999999999999999999999975 77778899999999999999999999999999 9999999999999999999
Q ss_pred HcCCCCCCCCcccccccccccCCChHHHHHHHHhhhccChHHHHHHHhhccCC-CCCcCChhhHHHHHHHhcccCCCChh
Q 002521 717 RIGALDEKENLTNLGKFLSMLPVDPKLGKMLVMGAIFRCFDPVLTIVSGLSVR-DPFLLPQEKKNLAEIAKSRFSAKDYS 795 (913)
Q Consensus 717 ~~gald~~~~lT~lG~~ls~lpl~p~~~k~ll~~~~~~cl~~~l~i~a~ls~~-~~f~~p~~~~~~~~~~~~~~~~~~~s 795 (913)
.+|||+..|.||.+|+.|++||+||.++|||+.+..++|.+++++|||+||+. ++|..|.++.-.+++++..|. ...|
T Consensus 663 aLGALn~~GeLTk~GrrMaEfP~dPmlsKmi~as~ky~cs~EiitiaamlS~~~svfyrpk~~~v~ad~a~~~f~-~~~g 741 (902)
T KOG0923|consen 663 ALGALNHLGELTKLGRRMAEFPVDPMLSKMIVASEKYKCSEEIITIAAMLSVGASVFYRPKDKQVHADNARKNFE-EPVG 741 (902)
T ss_pred HhhccccccchhhhhhhhhhcCCCHHHHhHHhhhccccchHHHHHHHHHHhcCchheecchhhhhhhhhhhhccC-CCCc
Confidence 99999999999999999999999999999999999999999999999999985 689999998888899999998 5689
Q ss_pred hHHHHHHHHHHHHHHhhcCCcHHHHHHhccChhhHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHhcc
Q 002521 796 DHMALVRAYEGWKDAEREGSGYEYCWRNFLSAQTLQAIHSLRKQFTFILRDAGLLDEDGGNNKLSHNQSLVRAVICSGLF 875 (913)
Q Consensus 796 Dhl~ll~af~~w~~~~~~~~~~~~c~~~~l~~~~l~~~~~~r~ql~~~l~~~~l~~~~~~~~~~s~~~~li~~~l~aGl~ 875 (913)
||++++++|+.|.... ....||++||+.+.+|+.+.++|.||..+|.+.+.-..+ +..+...||++|.+|||
T Consensus 742 Dhi~~L~vyn~w~es~---~s~~wC~e~~iq~~sm~rardir~qL~gll~~v~~~~~s-----~~~~~~~irk~i~aGff 813 (902)
T KOG0923|consen 742 DHIVLLNVYNQWKESK---YSTQWCYENFIQYRSMKRARDIRDQLEGLLERVEIDLSS-----NQNDLDKIRKAITAGFF 813 (902)
T ss_pred chhhhhHHHHHHhhcc---hhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhccccccC-----ChHHHHHHHHHHhcccc
Confidence 9999999999998764 567999999999999999999999999999988775432 11255679999999999
Q ss_pred cccccccccCCcccEEeecCCe-EEEcCCCccCcCCC
Q 002521 876 PGITSVVHRETSMSFKTMDDGQ-VFLYAVSVQVIVSN 911 (913)
Q Consensus 876 pnva~~~~~~~~~~y~t~~~~~-v~iHPsSv~~~~~~ 911 (913)
+|+|.+. +.++|+|+...+ |++||.|+++...+
T Consensus 814 ~h~a~l~---~~g~y~tvk~~~tv~~hp~S~l~~~~P 847 (902)
T KOG0923|consen 814 YHTAKLS---KGGHYRTVKHPQTVSIHPNSGLFEQLP 847 (902)
T ss_pred ccceecc---CCCcceeeccCcceeecCcccccccCC
Confidence 9999774 456899988776 89999999997543
No 5
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.2e-109 Score=887.76 Aligned_cols=592 Identities=36% Similarity=0.593 Sum_probs=541.1
Q ss_pred hcCchhhhHHhhhcCCCcHHHHHHHHHHHHcCCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHH
Q 002521 234 QESPEGNKMLDFRKSLPSFKEKERLLQAIARNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMA 313 (913)
Q Consensus 234 ~~~~~~~~l~~~r~~lP~~~~q~~il~~i~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~q 313 (913)
.-++.|.++++.|..||+|.+++++++.+.+|+.++++|+||||||||+|||+++...... ..|.||||+|..|++
T Consensus 31 p~s~rY~~ilk~R~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~~----~~v~CTQprrvaams 106 (699)
T KOG0925|consen 31 PYSQRYYDILKKRRELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSHL----TGVACTQPRRVAAMS 106 (699)
T ss_pred cCcHHHHHHHHHHhcCchHHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhhc----cceeecCchHHHHHH
Confidence 3477899999999999999999999999999999999999999999999999999887544 469999999999999
Q ss_pred HHHHHHHHhCCCcccEeeeEEeccccCCCCceEEEEecHHHHHHHhcCCCCCCceEEEeccccccCcchHHHHHHHHHhC
Q 002521 314 VSERVSAERGEPLGETVGYKVRLEGMKGKNTHLLFCTSGILLRRLLSDHNLNGVTHVFVDEIHERGMNEDFLLIVLKDLL 393 (913)
Q Consensus 314 va~rv~~~~~~~~g~~vGy~v~~e~~~~~~~~Ivv~T~g~Ll~~l~~~~~L~~~s~IIIDEaHer~~~~d~ll~llk~ll 393 (913)
+|.|++.|++..+|..|||.++++++.+.+|-+.|||+|+|++...+++.+..|++||+||||||++.+|++++++|+++
T Consensus 107 va~RVadEMDv~lG~EVGysIrfEdC~~~~T~Lky~tDgmLlrEams~p~l~~y~viiLDeahERtlATDiLmGllk~v~ 186 (699)
T KOG0925|consen 107 VAQRVADEMDVTLGEEVGYSIRFEDCTSPNTLLKYCTDGMLLREAMSDPLLGRYGVIILDEAHERTLATDILMGLLKEVV 186 (699)
T ss_pred HHHHHHHHhccccchhccccccccccCChhHHHHHhcchHHHHHHhhCcccccccEEEechhhhhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCccceEEEeccccCHHHHHhhhCCCCeeccCCccccceeeehhhHHhhhcccccccccccchhhhhHHHHhhhhchhh
Q 002521 394 PRRRDLRLILMSATLNAELFSNYFGGAPTIHIPGFTYPVQAHFLEDVLEMTGYKLTSLNQVDDYGQEKLWKTQRQLLPRK 473 (913)
Q Consensus 394 ~~~~~~kiIlmSATl~~~~~~~yf~~~~~i~i~g~~~pv~~~yl~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (913)
..+|++|+|+||||+++.+|+.||+++|+++||| ++||+++|....
T Consensus 187 ~~rpdLk~vvmSatl~a~Kfq~yf~n~Pll~vpg-~~PvEi~Yt~e~--------------------------------- 232 (699)
T KOG0925|consen 187 RNRPDLKLVVMSATLDAEKFQRYFGNAPLLAVPG-THPVEIFYTPEP--------------------------------- 232 (699)
T ss_pred hhCCCceEEEeecccchHHHHHHhCCCCeeecCC-CCceEEEecCCC---------------------------------
Confidence 9999999999999999999999999999999999 999999997542
Q ss_pred hhhhHHHHHHHHHhhccccccchhhhhhhccccccccchhhHHHHHHHHhhhcCCCcEEEEcCChHHHHHHHHHHHcC--
Q 002521 474 RKNQITALVEDALHKSNFENYSSRARDSLASWTADCIGFNLIEAVLCHICRKECPGAVLVFMTGWEDISCLRDQLKSH-- 551 (913)
Q Consensus 474 ~~~~i~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~li~~ll~~i~~~~~~g~iLVF~~~~~~i~~l~~~L~~~-- 551 (913)
-.++++.++. .+..|+..+.+|.||||+++.++|+..++.+...
T Consensus 233 ----erDylEaair------------------------------tV~qih~~ee~GDilvFLtgeeeIe~aC~~i~re~~ 278 (699)
T KOG0925|consen 233 ----ERDYLEAAIR------------------------------TVLQIHMCEEPGDILVFLTGEEEIEDACRKISREVD 278 (699)
T ss_pred ----ChhHHHHHHH------------------------------HHHHHHhccCCCCEEEEecCHHHHHHHHHHHHHHHH
Confidence 0123333333 3566777788999999999999999999988732
Q ss_pred CCCCCCCCeEEEEecCCCChHHHHHHhccCCCC-----ccEEEEecchhhhcCCCCCeEEEEeCCCCcceeecCCCCCCc
Q 002521 552 PLLGDPNRVLLLTCHGSMPTSEQKFIFEKAPPN-----IRKIVLATNMAEASITINDIVFVVDCGKAKETTYDALNNTPC 626 (913)
Q Consensus 552 ~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~g-----~~kVLVATniae~GIdIp~v~~VId~g~~k~~~yd~~~~~~~ 626 (913)
.+..+.....|+++| +.+|..+|+..+.. .+||+|+||+||++++|++|.+|||.|+.|++.|++.-...+
T Consensus 279 ~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~~RkvVvstniaetsltidgiv~VIDpGf~kqkVYNPRIRves 354 (699)
T KOG0925|consen 279 NLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAYGRKVVVSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVES 354 (699)
T ss_pred hhccccCCceEEecC----chhhccccCCCCcccCCCccceEEEEecchheeeeeccEEEEecCchhhhcccCcceeeee
Confidence 223344567899999 77888899887643 479999999999999999999999999999999999999999
Q ss_pred CCccccCHhhHHHHhcccCCCCCcEEEEecChhhHH-hhhhCCCCcccccChhhHHHHHhhcCCCCHHHHHHhccCCCch
Q 002521 627 LLPSWISQASARQRRGRAGRVQPGQCYHLYPRCVYE-AFAEYQLPELLRTPLNSLCLQIKSLQVGSIGEFLSAALQPPEP 705 (913)
Q Consensus 627 l~~~~iSka~~~QR~GRAGR~~~G~c~~L~t~~~~~-~l~~~~~pEi~r~~L~~~~L~lk~l~~~~~~~fl~~~l~pP~~ 705 (913)
++..||||+++.||+|||||.+||+||+||+++.|+ .|.+.+.|||+|.+|.+++|++|.+|++++..| +|++||.+
T Consensus 355 llv~PISkasA~qR~gragrt~pGkcfrLYte~~~~~em~~~typeilrsNL~s~VL~LKklgI~dlvhf--dfmDpPAP 432 (699)
T KOG0925|consen 355 LLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEAFEKEMQPQTYPEILRSNLSSTVLQLKKLGIDDLVHF--DFMDPPAP 432 (699)
T ss_pred eeeccchHhHHHHHhhhccCCCCCceEEeecHHhhhhcCCCCCcHHHHHHhhHHHHHHHHhcCcccccCC--cCCCCCCh
Confidence 999999999999999999999999999999999997 599999999999999999999999999999999 99999999
Q ss_pred HHHHHHHHHHHHcCCCCCCCCcccccccccccCCChHHHHHHHHhhhccChHHHHHHHhhccCCCCCcCCh-hhHHHHHH
Q 002521 706 LAVQNAVDFLKRIGALDEKENLTNLGKFLSMLPVDPKLGKMLVMGAIFRCFDPVLTIVSGLSVRDPFLLPQ-EKKNLAEI 784 (913)
Q Consensus 706 ~~i~~al~~L~~~gald~~~~lT~lG~~ls~lpl~p~~~k~ll~~~~~~cl~~~l~i~a~ls~~~~f~~p~-~~~~~~~~ 784 (913)
+++.+|++.|..++|||++|+||++|..|++||+||.++||||.++.|+|.+++|+|+|+||+.+.|+.|. +.++.|..
T Consensus 433 EtLMrALE~LnYLaaLdDdGnLT~lG~imSEFPLdPqLAkmLi~S~efnCsnEiLsisAMLsvPncFvRp~~~a~kaAde 512 (699)
T KOG0925|consen 433 ETLMRALEVLNYLAALDDDGNLTSLGEIMSEFPLDPQLAKMLIGSCEFNCSNEILSISAMLSVPNCFVRPTSSASKAADE 512 (699)
T ss_pred HHHHHHHHHhhhhhhhCCCcccchhhhhhhcCCCChHHHHHHhhcCCCCchHHHHHHHhcccCCccccCCChhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998 77889999
Q ss_pred HhcccCCCChhhHHHHHHHHHHHHHHhhcCCcHHHHHHhccChhhHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCHH
Q 002521 785 AKSRFSAKDYSDHMALVRAYEGWKDAEREGSGYEYCWRNFLSAQTLQAIHSLRKQFTFILRDAGLLDEDGGNNKLSHNQS 864 (913)
Q Consensus 785 ~~~~~~~~~~sDhl~ll~af~~w~~~~~~~~~~~~c~~~~l~~~~l~~~~~~r~ql~~~l~~~~l~~~~~~~~~~s~~~~ 864 (913)
+|..|+ +..|||++|+|+|++|++.. ....||+.||||+.+|+.++++|.||.++|.+.++......++.. .+..
T Consensus 513 ak~~fa-H~dGDHlTLlnVYhAfkq~~---~~~~WC~~~flN~ral~~Ad~vR~qL~rim~R~~L~~~st~F~S~-~y~~ 587 (699)
T KOG0925|consen 513 AKETFA-HIDGDHLTLLNVYHAFKQNN---EDPNWCYDNFLNYRALKSADNVRQQLLRIMDRFNLPLCSTDFGSR-DYYV 587 (699)
T ss_pred HHHHhc-cCCcchHHHHHHHHHHHhcC---CChhHHHHhcccHHHHHhHHHHHHHHHHHHHHhcCcccCCCCCCh-hHHH
Confidence 999999 78999999999999998754 457899999999999999999999999999999998766555531 2334
Q ss_pred HHHHHHHHhcccccccccccCCcccEEeecCCe-EEEcCCCccCcCCC
Q 002521 865 LVRAVICSGLFPGITSVVHRETSMSFKTMDDGQ-VFLYAVSVQVIVSN 911 (913)
Q Consensus 865 li~~~l~aGl~pnva~~~~~~~~~~y~t~~~~~-v~iHPsSv~~~~~~ 911 (913)
-||++|.+|||++||+..+ .++|.|+.+++ |.+||++|+.+.|+
T Consensus 588 nirKALvsgyFmqVA~~~~---~~~Ylt~kdnqvvqLhps~~l~~~Pe 632 (699)
T KOG0925|consen 588 NIRKALVSGYFMQVAHLER---GGHYLTVKDNQVVQLHPSTCLDHKPE 632 (699)
T ss_pred HHHHHHHHHHHHHHHhhcc---CCceEEEecCceEEeccccccCCCCC
Confidence 5899999999999997653 34899999999 58999999997764
No 6
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=100.00 E-value=1.2e-103 Score=964.48 Aligned_cols=588 Identities=33% Similarity=0.526 Sum_probs=524.4
Q ss_pred HHhhhcCCCcHHHHHHHHHHHHcCCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHHHHH
Q 002521 242 MLDFRKSLPSFKEKERLLQAIARNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVSAE 321 (913)
Q Consensus 242 l~~~r~~lP~~~~q~~il~~i~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv~~~ 321 (913)
...++..||++.++++|+++|.+|+++||+|+|||||||++|+++++. +.+..++|+||||||.+|.++|++++.+
T Consensus 66 ~~~~~~~LPi~~~r~~Il~ai~~~~VviI~GeTGSGKTTqlPq~lle~----g~g~~g~I~~TQPRRlAArsLA~RVA~E 141 (1294)
T PRK11131 66 EITYPENLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICLEL----GRGVKGLIGHTQPRRLAARTVANRIAEE 141 (1294)
T ss_pred ccCCCCCCCHHHHHHHHHHHHHhCCeEEEECCCCCCHHHHHHHHHHHc----CCCCCCceeeCCCcHHHHHHHHHHHHHH
Confidence 456788999999999999999999999999999999999999998873 4555678999999999999999999999
Q ss_pred hCCCcccEeeeEEeccccCCCCceEEEEecHHHHHHHhcCCCCCCceEEEeccccccCcchHHHHHHHHHhCccCccceE
Q 002521 322 RGEPLGETVGYKVRLEGMKGKNTHLLFCTSGILLRRLLSDHNLNGVTHVFVDEIHERGMNEDFLLIVLKDLLPRRRDLRL 401 (913)
Q Consensus 322 ~~~~~g~~vGy~v~~e~~~~~~~~Ivv~T~g~Ll~~l~~~~~L~~~s~IIIDEaHer~~~~d~ll~llk~ll~~~~~~ki 401 (913)
++..+|..|||.++++...+.+++|+|||||+|++.+..++.|++|++|||||||||++++|+++++++.+++.++++|+
T Consensus 142 l~~~lG~~VGY~vrf~~~~s~~t~I~v~TpG~LL~~l~~d~~Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~~rpdlKv 221 (1294)
T PRK11131 142 LETELGGCVGYKVRFNDQVSDNTMVKLMTDGILLAEIQQDRLLMQYDTIIIDEAHERSLNIDFILGYLKELLPRRPDLKV 221 (1294)
T ss_pred HhhhhcceeceeecCccccCCCCCEEEEChHHHHHHHhcCCccccCcEEEecCccccccccchHHHHHHHhhhcCCCceE
Confidence 99999999999999999888899999999999999999999999999999999999999999999999999998899999
Q ss_pred EEeccccCHHHHHhhhCCCCeeccCCccccceeeehhhHHhhhcccccccccccchhhhhHHHHhhhhchhhhhhhHHHH
Q 002521 402 ILMSATLNAELFSNYFGGAPTIHIPGFTYPVQAHFLEDVLEMTGYKLTSLNQVDDYGQEKLWKTQRQLLPRKRKNQITAL 481 (913)
Q Consensus 402 IlmSATl~~~~~~~yf~~~~~i~i~g~~~pv~~~yl~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 481 (913)
|+||||++.+.|++||+++|++.++|+.|||+.+|...... ++ .. ..+.
T Consensus 222 ILmSATid~e~fs~~F~~apvI~V~Gr~~pVei~y~p~~~~------------~~---------------~~----~~d~ 270 (1294)
T PRK11131 222 IITSATIDPERFSRHFNNAPIIEVSGRTYPVEVRYRPIVEE------------AD---------------DT----ERDQ 270 (1294)
T ss_pred EEeeCCCCHHHHHHHcCCCCEEEEcCccccceEEEeecccc------------cc---------------hh----hHHH
Confidence 99999999999999999999999999999999998642100 00 00 0001
Q ss_pred HHHHHhhccccccchhhhhhhccccccccchhhHHHHHHHHhhhcCCCcEEEEcCChHHHHHHHHHHHcCCCCCCCCCeE
Q 002521 482 VEDALHKSNFENYSSRARDSLASWTADCIGFNLIEAVLCHICRKECPGAVLVFMTGWEDISCLRDQLKSHPLLGDPNRVL 561 (913)
Q Consensus 482 v~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~li~~ll~~i~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~ 561 (913)
+...+ ..+..++ ....|+|||||||..+|+.+++.|..... ....
T Consensus 271 l~~ll------------------------------~~V~~l~-~~~~GdILVFLpg~~EIe~lae~L~~~~~----~~~~ 315 (1294)
T PRK11131 271 LQAIF------------------------------DAVDELG-REGPGDILIFMSGEREIRDTADALNKLNL----RHTE 315 (1294)
T ss_pred HHHHH------------------------------HHHHHHh-cCCCCCEEEEcCCHHHHHHHHHHHHhcCC----Ccce
Confidence 11111 1122233 24578999999999999999999987521 2456
Q ss_pred EEEecCCCChHHHHHHhccCCCCccEEEEecchhhhcCCCCCeEEEEeCCCCcceeecCCCCCCcCCccccCHhhHHHHh
Q 002521 562 LLTCHGSMPTSEQKFIFEKAPPNIRKIVLATNMAEASITINDIVFVVDCGKAKETTYDALNNTPCLLPSWISQASARQRR 641 (913)
Q Consensus 562 v~~lHs~l~~~er~~v~~~f~~g~~kVLVATniae~GIdIp~v~~VId~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~ 641 (913)
+.++||+|++++|..+|+. .|.++|||||||||+|||||+|+||||+|+.|.+.||+.+++..+...|||+++|.||+
T Consensus 316 VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRa 393 (1294)
T PRK11131 316 ILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRK 393 (1294)
T ss_pred EeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEECCCccccccccccCcccCCeeecCHhhHhhhc
Confidence 8999999999999999986 57899999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCcEEEEecChhhHHhhhhCCCCcccccChhhHHHHHhhcCCCCHHHHHHhccCCCchHHHHHHHHHHHHcCCC
Q 002521 642 GRAGRVQPGQCYHLYPRCVYEAFAEYQLPELLRTPLNSLCLQIKSLQVGSIGEFLSAALQPPEPLAVQNAVDFLKRIGAL 721 (913)
Q Consensus 642 GRAGR~~~G~c~~L~t~~~~~~l~~~~~pEi~r~~L~~~~L~lk~l~~~~~~~fl~~~l~pP~~~~i~~al~~L~~~gal 721 (913)
|||||.++|.||+||++++|..+++++.|||+|++|.++||+++++|++++..| .|++||+..+|.+|++.|..+|||
T Consensus 394 GRAGR~~~G~c~rLyte~d~~~~~~~~~PEIlR~~L~~viL~lk~lgl~di~~F--~fldpP~~~~i~~al~~L~~LgAl 471 (1294)
T PRK11131 394 GRCGRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAF--PFVEAPDKRNIQDGVRLLEELGAI 471 (1294)
T ss_pred cccCCCCCcEEEEeCCHHHHHhhhcccCCccccCCHHHHHHHHHHcCCCCccee--eCCCCCCHHHHHHHHHHHHHCCCC
Confidence 999999999999999999999999999999999999999999999999999999 899999999999999999999999
Q ss_pred CCC-----CCcccccccccccCCChHHHHHHHHhhhccChHHHHHHHhhccCCCCCcCChhhHHHHHHHhcccCCCChhh
Q 002521 722 DEK-----ENLTNLGKFLSMLPVDPKLGKMLVMGAIFRCFDPVLTIVSGLSVRDPFLLPQEKKNLAEIAKSRFSAKDYSD 796 (913)
Q Consensus 722 d~~-----~~lT~lG~~ls~lpl~p~~~k~ll~~~~~~cl~~~l~i~a~ls~~~~f~~p~~~~~~~~~~~~~~~~~~~sD 796 (913)
|.+ ++||++|+.|++||+||++||||+.|+.++|++++++|||+||+++||..|.++++.++.++++|+ +..||
T Consensus 472 d~~~~~~~~~LT~lG~~la~LPldPrlakmLl~a~~~~c~~evl~IaA~Lsv~dpf~~p~~~~~~a~~~~~~f~-~~~sD 550 (1294)
T PRK11131 472 TTDEQASAYKLTPLGRQLAQLPVDPRLARMVLEAQKHGCVREVMIITSALSIQDPRERPMDKQQASDEKHRRFA-DKESD 550 (1294)
T ss_pred CccccCCCccCcHHHHHHHhCCCChHHHHHHHHhhhcCCHHHHHHHHHHHcCCCcccCCchhHHHHHHHHHhhC-CCCCC
Confidence 864 479999999999999999999999999999999999999999999999999999999999999998 78999
Q ss_pred HHHHHHHHHHHHHHhhc---CCcHHHHHHhccChhhHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHh
Q 002521 797 HMALVRAYEGWKDAERE---GSGYEYCWRNFLSAQTLQAIHSLRKQFTFILRDAGLLDEDGGNNKLSHNQSLVRAVICSG 873 (913)
Q Consensus 797 hl~ll~af~~w~~~~~~---~~~~~~c~~~~l~~~~l~~~~~~r~ql~~~l~~~~l~~~~~~~~~~s~~~~li~~~l~aG 873 (913)
|++++|+|+.|.+.... +..++||++||||+.+|+++.++|.||..++++.|+... ....+++.|++|||+|
T Consensus 551 ~lt~ln~~~~~~~~~~~~s~~~~~~~C~~~~L~~~~l~e~~~i~~QL~~~~~~~g~~~~-----~~~~~~~~i~~all~G 625 (1294)
T PRK11131 551 FLAFVNLWNYLQEQQKALSSNQFRRLCRTDYLNYLRVREWQDIYTQLRQVVKELGIPVN-----SEPAEYREIHTALLTG 625 (1294)
T ss_pred HHHHHHHHHHHHHHHhhhcchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHcCCCCC-----CCcccHHHHHHHHHhh
Confidence 99999999999865431 224689999999999999999999999999999998643 2345788999999999
Q ss_pred cccccccccccCCcccEEeecCCeEEEcCCCccCcCCC
Q 002521 874 LFPGITSVVHRETSMSFKTMDDGQVFLYAVSVQVIVSN 911 (913)
Q Consensus 874 l~pnva~~~~~~~~~~y~t~~~~~v~iHPsSv~~~~~~ 911 (913)
||+|||.... ..+.|.+..+..|+|||+|++++.++
T Consensus 626 ~~~nva~~~~--~~~~y~~~~~~~~~ihP~S~L~~~~p 661 (1294)
T PRK11131 626 LLSHIGMKDA--EKQEYTGARNARFSIFPGSGLFKKPP 661 (1294)
T ss_pred cHHHHeeccC--CCCeEEccCCcEEEEcCCccccCCCC
Confidence 9999997642 23468888878899999999998643
No 7
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=4.1e-100 Score=937.27 Aligned_cols=588 Identities=36% Similarity=0.566 Sum_probs=524.1
Q ss_pred hhHHhhhcCCCcHHHHHHHHHHHHcCCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHHH
Q 002521 240 NKMLDFRKSLPSFKEKERLLQAIARNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVS 319 (913)
Q Consensus 240 ~~l~~~r~~lP~~~~q~~il~~i~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv~ 319 (913)
.....++..||++.++++|+++|.+|+++||+|+|||||||++|+++++. +.+..++|+|+||||.+|.+++++++
T Consensus 57 ~~~~~~~~~LPi~~~~~~Il~~l~~~~vvii~g~TGSGKTTqlPq~lle~----~~~~~~~I~~tQPRRlAA~svA~RvA 132 (1283)
T TIGR01967 57 VPEIRYPDNLPVSAKREDIAEAIAENQVVIIAGETGSGKTTQLPKICLEL----GRGSHGLIGHTQPRRLAARTVAQRIA 132 (1283)
T ss_pred cccccCCCCCCHHHHHHHHHHHHHhCceEEEeCCCCCCcHHHHHHHHHHc----CCCCCceEecCCccHHHHHHHHHHHH
Confidence 34566888999999999999999999999999999999999999999874 44556799999999999999999999
Q ss_pred HHhCCCcccEeeeEEeccccCCCCceEEEEecHHHHHHHhcCCCCCCceEEEeccccccCcchHHHHHHHHHhCccCccc
Q 002521 320 AERGEPLGETVGYKVRLEGMKGKNTHLLFCTSGILLRRLLSDHNLNGVTHVFVDEIHERGMNEDFLLIVLKDLLPRRRDL 399 (913)
Q Consensus 320 ~~~~~~~g~~vGy~v~~e~~~~~~~~Ivv~T~g~Ll~~l~~~~~L~~~s~IIIDEaHer~~~~d~ll~llk~ll~~~~~~ 399 (913)
+++|..+|..|||.+++++..+.+++|+|+|+|+|++.+..++.|.+|++|||||||||++++|+++.+++.++..++++
T Consensus 133 ~elg~~lG~~VGY~vR~~~~~s~~T~I~~~TdGiLLr~l~~d~~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~rpdL 212 (1283)
T TIGR01967 133 EELGTPLGEKVGYKVRFHDQVSSNTLVKLMTDGILLAETQQDRFLSRYDTIIIDEAHERSLNIDFLLGYLKQLLPRRPDL 212 (1283)
T ss_pred HHhCCCcceEEeeEEcCCcccCCCceeeeccccHHHHHhhhCcccccCcEEEEcCcchhhccchhHHHHHHHHHhhCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEeccccCHHHHHhhhCCCCeeccCCccccceeeehhhHHhhhcccccccccccchhhhhHHHHhhhhchhhhhhhHH
Q 002521 400 RLILMSATLNAELFSNYFGGAPTIHIPGFTYPVQAHFLEDVLEMTGYKLTSLNQVDDYGQEKLWKTQRQLLPRKRKNQIT 479 (913)
Q Consensus 400 kiIlmSATl~~~~~~~yf~~~~~i~i~g~~~pv~~~yl~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 479 (913)
|+|+||||++.+.|++||+++|++.++|+.|||+.+|...... . ++ .. .
T Consensus 213 KlIlmSATld~~~fa~~F~~apvI~V~Gr~~PVev~Y~~~~~~----------~-~~----------------~~----~ 261 (1283)
T TIGR01967 213 KIIITSATIDPERFSRHFNNAPIIEVSGRTYPVEVRYRPLVEE----------Q-ED----------------DD----L 261 (1283)
T ss_pred eEEEEeCCcCHHHHHHHhcCCCEEEECCCcccceeEEeccccc----------c-cc----------------hh----h
Confidence 9999999999999999999999999999999999988531000 0 00 00 0
Q ss_pred HHHHHHHhhccccccchhhhhhhccccccccchhhHHHHHHHHhhhcCCCcEEEEcCChHHHHHHHHHHHcCCCCCCCCC
Q 002521 480 ALVEDALHKSNFENYSSRARDSLASWTADCIGFNLIEAVLCHICRKECPGAVLVFMTGWEDISCLRDQLKSHPLLGDPNR 559 (913)
Q Consensus 480 ~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~li~~ll~~i~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~ 559 (913)
..++ .+...+..++.. ..|+||||+||..+|+.+++.|.... ..+
T Consensus 262 ~~~~------------------------------~i~~~I~~l~~~-~~GdILVFLpg~~EI~~l~~~L~~~~----~~~ 306 (1283)
T TIGR01967 262 DQLE------------------------------AILDAVDELFAE-GPGDILIFLPGEREIRDAAEILRKRN----LRH 306 (1283)
T ss_pred hHHH------------------------------HHHHHHHHHHhh-CCCCEEEeCCCHHHHHHHHHHHHhcC----CCC
Confidence 0000 011123333332 46899999999999999999998752 125
Q ss_pred eEEEEecCCCChHHHHHHhccCCCCccEEEEecchhhhcCCCCCeEEEEeCCCCcceeecCCCCCCcCCccccCHhhHHH
Q 002521 560 VLLLTCHGSMPTSEQKFIFEKAPPNIRKIVLATNMAEASITINDIVFVVDCGKAKETTYDALNNTPCLLPSWISQASARQ 639 (913)
Q Consensus 560 ~~v~~lHs~l~~~er~~v~~~f~~g~~kVLVATniae~GIdIp~v~~VId~g~~k~~~yd~~~~~~~l~~~~iSka~~~Q 639 (913)
+.+.++||+|+.++|.++|+.+ +.++|||||||||+|||||+|+||||+|+++.+.||+.+++..+...|||+++|.|
T Consensus 307 ~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~~~L~~~~ISkasa~Q 384 (1283)
T TIGR01967 307 TEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYRTKVQRLPIEPISQASANQ 384 (1283)
T ss_pred cEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeCCCccccccccccCccccCCccCCHHHHHH
Confidence 6799999999999999999865 35899999999999999999999999999999999999999999999999999999
Q ss_pred HhcccCCCCCcEEEEecChhhHHhhhhCCCCcccccChhhHHHHHhhcCCCCHHHHHHhccCCCchHHHHHHHHHHHHcC
Q 002521 640 RRGRAGRVQPGQCYHLYPRCVYEAFAEYQLPELLRTPLNSLCLQIKSLQVGSIGEFLSAALQPPEPLAVQNAVDFLKRIG 719 (913)
Q Consensus 640 R~GRAGR~~~G~c~~L~t~~~~~~l~~~~~pEi~r~~L~~~~L~lk~l~~~~~~~fl~~~l~pP~~~~i~~al~~L~~~g 719 (913)
|+|||||.++|.||+||++++|+.+++++.|||+|++|.+++|+++++|++++.+| .|++||+..++..|++.|..+|
T Consensus 385 RaGRAGR~~~G~cyRLyte~~~~~~~~~~~PEIlR~~L~~viL~l~~lg~~di~~f--~fldpP~~~~i~~A~~~L~~LG 462 (1283)
T TIGR01967 385 RKGRCGRVAPGICIRLYSEEDFNSRPEFTDPEILRTNLASVILQMLALRLGDIAAF--PFIEAPDPRAIRDGFRLLEELG 462 (1283)
T ss_pred HhhhhCCCCCceEEEecCHHHHHhhhhccCcccccccHHHHHHHHHhcCCCCcccc--cCCCCCCHHHHHHHHHHHHHCC
Confidence 99999999999999999999999999999999999999999999999999999999 8999999999999999999999
Q ss_pred CCCCCC---CcccccccccccCCChHHHHHHHHhhhccChHHHHHHHhhccCCCCCcCChhhHHHHHHHhcccCCCChhh
Q 002521 720 ALDEKE---NLTNLGKFLSMLPVDPKLGKMLVMGAIFRCFDPVLTIVSGLSVRDPFLLPQEKKNLAEIAKSRFSAKDYSD 796 (913)
Q Consensus 720 ald~~~---~lT~lG~~ls~lpl~p~~~k~ll~~~~~~cl~~~l~i~a~ls~~~~f~~p~~~~~~~~~~~~~~~~~~~sD 796 (913)
|||+++ .||++|+.|+.||++|++||||+.|+.++|++++++|||+|++++||..|.++++.++.+++.|. +..||
T Consensus 463 Ald~~~~~~~LT~lGr~ma~LPldPrlarmLl~a~~~gcl~e~l~IaA~Ls~~dp~~~p~~~~~~a~~~~~~f~-~~~sD 541 (1283)
T TIGR01967 463 ALDDDEAEPQLTPIGRQLAQLPVDPRLARMLLEAHRLGCLQEVLIIASALSIQDPRERPMEKQQAADQAHARFK-DPRSD 541 (1283)
T ss_pred CCCCCCCCccccHHHHHHhhcCCChHHHHHHHHhhhcCCHHHHHHHHHHHcCCCcCCCcchhHHHHHHHHHHhc-CCCCC
Confidence 999988 79999999999999999999999999999999999999999999999999999999999999998 67899
Q ss_pred HHHHHHHHHHHHHHhhc---CCcHHHHHHhccChhhHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHh
Q 002521 797 HMALVRAYEGWKDAERE---GSGYEYCWRNFLSAQTLQAIHSLRKQFTFILRDAGLLDEDGGNNKLSHNQSLVRAVICSG 873 (913)
Q Consensus 797 hl~ll~af~~w~~~~~~---~~~~~~c~~~~l~~~~l~~~~~~r~ql~~~l~~~~l~~~~~~~~~~s~~~~li~~~l~aG 873 (913)
|++++|+|+.|.+.... +....||++||||+.+|+++.++++||..++++.|+... .+..+.+.|+++||+|
T Consensus 542 ~l~~L~~~~~~~~~~~~~~~~~~~~~C~~~fL~~~~l~~~~~i~~QL~~~~~~~~~~~~-----~~~~~~~~i~~~l~~g 616 (1283)
T TIGR01967 542 FLSRVNLWRHIEEQRQALSANQFRNACRKQYLNYLRVREWQDIYRQLTQVVKELGLKLN-----EEPADYDAIHKALLSG 616 (1283)
T ss_pred HHHHHHHHHHHHHhhhhccchHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHcCCCcC-----CCCccHHHHHHHHHHh
Confidence 99999999999865322 234689999999999999999999999999999988542 2234566799999999
Q ss_pred cccccccccccCCcccEEeecCCeEEEcCCCccCcCC
Q 002521 874 LFPGITSVVHRETSMSFKTMDDGQVFLYAVSVQVIVS 910 (913)
Q Consensus 874 l~pnva~~~~~~~~~~y~t~~~~~v~iHPsSv~~~~~ 910 (913)
||+|||+... .+.|.+..+..+.|||+|++++.+
T Consensus 617 ~~~~iA~~~~---~~~y~~~~g~~~~ihP~S~L~~~~ 650 (1283)
T TIGR01967 617 LLSQIGMKDE---KHEYDGARGRKFHIFPGSPLFKKP 650 (1283)
T ss_pred hHHHHheeCC---CCcEEecCCcEEEECCCccccCCC
Confidence 9999997542 247999887789999999998753
No 8
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=5.4e-99 Score=895.67 Aligned_cols=593 Identities=40% Similarity=0.612 Sum_probs=521.4
Q ss_pred cCchhhhHHhhhcCCCcHHHHHHHHHHHHcCCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHH
Q 002521 235 ESPEGNKMLDFRKSLPSFKEKERLLQAIARNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAV 314 (913)
Q Consensus 235 ~~~~~~~l~~~r~~lP~~~~q~~il~~i~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qv 314 (913)
.++.+..+..++..||++..+.+|++++.+++++||+||||||||||+|+++++..+ +..+.|+||||||.+|.++
T Consensus 35 ~~~~~~~~~~~~~~LPv~~~~~~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~----~~~g~I~~tQPRRlAArsv 110 (845)
T COG1643 35 RSANVPDILEYRSGLPVTAVRDEILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGL----GIAGKIGCTQPRRLAARSV 110 (845)
T ss_pred cccccchhhhccccCCcHHHHHHHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhc----ccCCeEEecCchHHHHHHH
Confidence 456677888899999999999999999999999999999999999999999999754 4456999999999999999
Q ss_pred HHHHHHHhCCCcccEeeeEEeccccCCCCceEEEEecHHHHHHHhcCCCCCCceEEEeccccccCcchHHHHHHHHHhCc
Q 002521 315 SERVSAERGEPLGETVGYKVRLEGMKGKNTHLLFCTSGILLRRLLSDHNLNGVTHVFVDEIHERGMNEDFLLIVLKDLLP 394 (913)
Q Consensus 315 a~rv~~~~~~~~g~~vGy~v~~e~~~~~~~~Ivv~T~g~Ll~~l~~~~~L~~~s~IIIDEaHer~~~~d~ll~llk~ll~ 394 (913)
|+|+++++|+.+|+.|||.+||++..+.+|.|.|+|+|+|++++++|+.|+.|++|||||||||++++|++++++++++.
T Consensus 111 A~RvAeel~~~~G~~VGY~iRfe~~~s~~Trik~mTdGiLlrei~~D~~Ls~ys~vIiDEaHERSl~tDilLgllk~~~~ 190 (845)
T COG1643 111 AERVAEELGEKLGETVGYSIRFESKVSPRTRIKVMTDGILLREIQNDPLLSGYSVVIIDEAHERSLNTDILLGLLKDLLA 190 (845)
T ss_pred HHHHHHHhCCCcCceeeEEEEeeccCCCCceeEEeccHHHHHHHhhCcccccCCEEEEcchhhhhHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred cCc-cceEEEeccccCHHHHHhhhCCCCeeccCCccccceeeehhhHHhhhcccccccccccchhhhhHHHHhhhhchhh
Q 002521 395 RRR-DLRLILMSATLNAELFSNYFGGAPTIHIPGFTYPVQAHFLEDVLEMTGYKLTSLNQVDDYGQEKLWKTQRQLLPRK 473 (913)
Q Consensus 395 ~~~-~~kiIlmSATl~~~~~~~yf~~~~~i~i~g~~~pv~~~yl~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (913)
.++ ++|+|+||||++.+.|++||+++|++.++|++|||+++|.+... .++
T Consensus 191 ~rr~DLKiIimSATld~~rfs~~f~~apvi~i~GR~fPVei~Y~~~~~-------------~d~---------------- 241 (845)
T COG1643 191 RRRDDLKLIIMSATLDAERFSAYFGNAPVIEIEGRTYPVEIRYLPEAE-------------ADY---------------- 241 (845)
T ss_pred hcCCCceEEEEecccCHHHHHHHcCCCCEEEecCCccceEEEecCCCC-------------cch----------------
Confidence 666 79999999999999999999999999999999999999975421 000
Q ss_pred hhhhHHHHHHHHHhhccccccchhhhhhhccccccccchhhHHHHHHHHhhhcCCCcEEEEcCChHHHHHHHHHHHcCCC
Q 002521 474 RKNQITALVEDALHKSNFENYSSRARDSLASWTADCIGFNLIEAVLCHICRKECPGAVLVFMTGWEDISCLRDQLKSHPL 553 (913)
Q Consensus 474 ~~~~i~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~li~~ll~~i~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~ 553 (913)
. +++++. ....++.....|.||||+||..+|+.+++.|.+..
T Consensus 242 ---~----l~~ai~------------------------------~~v~~~~~~~~GdILvFLpG~~EI~~~~~~L~~~~- 283 (845)
T COG1643 242 ---I----LLDAIV------------------------------AAVDIHLREGSGSILVFLPGQREIERTAEWLEKAE- 283 (845)
T ss_pred ---h----HHHHHH------------------------------HHHHHhccCCCCCEEEECCcHHHHHHHHHHHHhcc-
Confidence 0 111111 12233344568999999999999999999999821
Q ss_pred CCCCCCeEEEEecCCCChHHHHHHhccCCCCccEEEEecchhhhcCCCCCeEEEEeCCCCcceeecCCCCCCcCCccccC
Q 002521 554 LGDPNRVLLLTCHGSMPTSEQKFIFEKAPPNIRKIVLATNMAEASITINDIVFVVDCGKAKETTYDALNNTPCLLPSWIS 633 (913)
Q Consensus 554 ~~~~~~~~v~~lHs~l~~~er~~v~~~f~~g~~kVLVATniae~GIdIp~v~~VId~g~~k~~~yd~~~~~~~l~~~~iS 633 (913)
++ ..+.|+++||.|+.++|.++|+..+.|++|||+||||||+|||||+|+||||+|+.|.+.||+.+++..|.+.|||
T Consensus 284 l~--~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g~~~L~~~~IS 361 (845)
T COG1643 284 LG--DDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGLTRLETEPIS 361 (845)
T ss_pred cc--CCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCcccccccccccCceeeeEEEec
Confidence 21 3688999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhHHHHhcccCCCCCcEEEEecChhhHHhhhhCCCCcccccChhhHHHHHhhcCCC-CHHHHHHhccCCCchHHHHHHH
Q 002521 634 QASARQRRGRAGRVQPGQCYHLYPRCVYEAFAEYQLPELLRTPLNSLCLQIKSLQVG-SIGEFLSAALQPPEPLAVQNAV 712 (913)
Q Consensus 634 ka~~~QR~GRAGR~~~G~c~~L~t~~~~~~l~~~~~pEi~r~~L~~~~L~lk~l~~~-~~~~fl~~~l~pP~~~~i~~al 712 (913)
+|++.||+|||||++||+||+||++++|..|++++.|||+|++|+.++|+++++|++ ++..| .|+|||+..++..|+
T Consensus 362 qAsA~QRaGRAGR~~pGicyRLyse~~~~~~~~~t~PEIlrtdLs~~vL~l~~~G~~~d~~~f--~fld~P~~~~i~~A~ 439 (845)
T COG1643 362 KASADQRAGRAGRTGPGICYRLYSEEDFLAFPEFTLPEILRTDLSGLVLQLKSLGIGQDIAPF--PFLDPPPEAAIQAAL 439 (845)
T ss_pred hhhhhhhccccccCCCceEEEecCHHHHHhcccCCChhhhhcchHHHHHHHHhcCCCCCcccC--ccCCCCChHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999996 99999 999999999999999
Q ss_pred HHHHHcCCCCCCCCcccccccccccCCChHHHHHHHHhhhccChHHHHHHHhhccCCC---CCcCChhhHH---HHHHHh
Q 002521 713 DFLKRIGALDEKENLTNLGKFLSMLPVDPKLGKMLVMGAIFRCFDPVLTIVSGLSVRD---PFLLPQEKKN---LAEIAK 786 (913)
Q Consensus 713 ~~L~~~gald~~~~lT~lG~~ls~lpl~p~~~k~ll~~~~~~cl~~~l~i~a~ls~~~---~f~~p~~~~~---~~~~~~ 786 (913)
+.|..+||||.++.||++|+.|+.||+||++|+||+.+..++|++++++|||+|++++ .|..+.+.+. ....++
T Consensus 440 ~~L~~LGAld~~g~LT~lG~~ms~lpldprLA~mLl~a~~~g~~~e~~~Ias~Ls~~~~~s~~~~~~~~~~~~~~~~~~~ 519 (845)
T COG1643 440 TLLQELGALDDSGKLTPLGKQMSLLPLDPRLARMLLTAPEGGCLGEAATIASMLSEQDRESDFSRDVKLRKQRTAQDLLK 519 (845)
T ss_pred HHHHHcCCcCCCCCCCHHHHHHHhCCCChHHHHHHHhccccCcHHHHHHHHHhhccCCCcchhccccchhhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999 6887776555 333333
Q ss_pred -cccC--CCChhhHHHHHHHHHHHHHHhhcC---CcHHHHHHhccChhhHHHHHHHHHHHHHHHHH-cCCCCCCCCCC--
Q 002521 787 -SRFS--AKDYSDHMALVRAYEGWKDAEREG---SGYEYCWRNFLSAQTLQAIHSLRKQFTFILRD-AGLLDEDGGNN-- 857 (913)
Q Consensus 787 -~~~~--~~~~sDhl~ll~af~~w~~~~~~~---~~~~~c~~~~l~~~~l~~~~~~r~ql~~~l~~-~~l~~~~~~~~-- 857 (913)
..+. ....+||++++++|..|....... ....||+.++++.++|..+..++.+++..+.. .|.+......+
T Consensus 520 ~l~~~~~~~~~~d~~~ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~ 599 (845)
T COG1643 520 RLKRRNAADPRGDHLLLLEAFPDRIARKRAKGEYLRANGCRAMLFPTKALSRAPWIIAALLVQTSALAGRILAAAEIDED 599 (845)
T ss_pred HHHhccCCCcchHHHHHHHHHHHHHHhhhccchhhHhcChhhhcCChhHHHhhHHHHHHHHHhhhccccchhhhcccCcc
Confidence 2222 246899999999999998876321 35689999999999999999999999888877 55433211100
Q ss_pred ------------CCCCCHHHHHHHHHHhcccccccccccCCcccEEeecC-CeEEEcCCCc
Q 002521 858 ------------KLSHNQSLVRAVICSGLFPGITSVVHRETSMSFKTMDD-GQVFLYAVSV 905 (913)
Q Consensus 858 ------------~~s~~~~li~~~l~aGl~pnva~~~~~~~~~~y~t~~~-~~v~iHPsSv 905 (913)
.+. .|+.++.++++|++.|++.+.... ..|.+..+ ..|.+||+||
T Consensus 600 ~~~~~~~~~~~~~~~-~~d~~~~~l~a~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~~v 657 (845)
T COG1643 600 EWAAQHLPEHCYSEP-IWDDIRGALAAGRKLNIAQLQLDG--RPYVTLSDNTPVFAHPSSV 657 (845)
T ss_pred hhhhhhhhhhhccch-hHHHHhhhhhhheecceeeeeccc--cccccCCCCceeEecchhH
Confidence 111 468899999999999999876432 34778776 4599999996
No 9
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=9.4e-96 Score=818.21 Aligned_cols=595 Identities=36% Similarity=0.601 Sum_probs=512.7
Q ss_pred hhhHHhhhcCCCcHHHHHHHHHHHHcCCeEEEEcCCCchHHhHHHHHHHHHHHHhCCC-CceEEEEcchhHHHHHHHHHH
Q 002521 239 GNKMLDFRKSLPSFKEKERLLQAIARNQVIVISGETGCGKTTQLPQYILESEIESGRG-AFCNIICTQPRRISAMAVSER 317 (913)
Q Consensus 239 ~~~l~~~r~~lP~~~~q~~il~~i~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~-~~~~Ilv~qPrr~La~qva~r 317 (913)
-.++++.|..||+....++|+++|..|.+|||||+||||||||+|||+++....+... ..+.|-+|||||.+|+.+|+|
T Consensus 245 ~~EIQ~sR~~LPI~aeEq~IMEaIn~n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkR 324 (1172)
T KOG0926|consen 245 PAEIQESRLDLPIVAEEQRIMEAINENPVVIICGETGSGKTTQVPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKR 324 (1172)
T ss_pred cHHHHHHHhcCchhHHHHHHHHHhhcCCeEEEecCCCCCccccchHHHHHcccCCccCCCCCeeeecCchHHHHHHHHHH
Confidence 4578889999999999999999999999999999999999999999999976544321 145899999999999999999
Q ss_pred HHHHhCCCcccEeeeEEeccccCCCCceEEEEecHHHHHHHhcCCCCCCceEEEeccccccCcchHHHHHHHHHhCccC-
Q 002521 318 VSAERGEPLGETVGYKVRLEGMKGKNTHLLFCTSGILLRRLLSDHNLNGVTHVFVDEIHERGMNEDFLLIVLKDLLPRR- 396 (913)
Q Consensus 318 v~~~~~~~~g~~vGy~v~~e~~~~~~~~Ivv~T~g~Ll~~l~~~~~L~~~s~IIIDEaHer~~~~d~ll~llk~ll~~~- 396 (913)
|+.|+|. +|..|||++|+++..++++.|.|||+|+|++.+.+|..|..|+.|||||||||++++|+|.++|.++.+.|
T Consensus 325 Va~EL~~-~~~eVsYqIRfd~ti~e~T~IkFMTDGVLLrEi~~DflL~kYSvIIlDEAHERSvnTDILiGmLSRiV~LR~ 403 (1172)
T KOG0926|consen 325 VAFELGV-LGSEVSYQIRFDGTIGEDTSIKFMTDGVLLREIENDFLLTKYSVIILDEAHERSVNTDILIGMLSRIVPLRQ 403 (1172)
T ss_pred HHHHhcc-CccceeEEEEeccccCCCceeEEecchHHHHHHHHhHhhhhceeEEechhhhccchHHHHHHHHHHHHHHHH
Confidence 9999998 89999999999999999999999999999999999999999999999999999999999999999988754
Q ss_pred ---------ccceEEEeccccCHHHHH---hhhC-CCCeeccCCccccceeeehhhHHhhhcccccccccccchhhhhHH
Q 002521 397 ---------RDLRLILMSATLNAELFS---NYFG-GAPTIHIPGFTYPVQAHFLEDVLEMTGYKLTSLNQVDDYGQEKLW 463 (913)
Q Consensus 397 ---------~~~kiIlmSATl~~~~~~---~yf~-~~~~i~i~g~~~pv~~~yl~di~~~~~~~~~~~~~~~~~~~~~~~ 463 (913)
..+|+|+||||+..++|. .+|. .+|++.|+.|.|||.+||-... -+
T Consensus 404 k~~ke~~~~kpLKLIIMSATLRVsDFtenk~LFpi~pPlikVdARQfPVsIHF~krT-------------~~-------- 462 (1172)
T KOG0926|consen 404 KYYKEQCQIKPLKLIIMSATLRVSDFTENKRLFPIPPPLIKVDARQFPVSIHFNKRT-------------PD-------- 462 (1172)
T ss_pred HHhhhhcccCceeEEEEeeeEEecccccCceecCCCCceeeeecccCceEEEeccCC-------------Cc--------
Confidence 258999999999888887 3565 5789999999999999995320 01
Q ss_pred HHhhhhchhhhhhhHHHHHHHHHhhccccccchhhhhhhccccccccchhhHHHHHHHHhhhcCCCcEEEEcCChHHHHH
Q 002521 464 KTQRQLLPRKRKNQITALVEDALHKSNFENYSSRARDSLASWTADCIGFNLIEAVLCHICRKECPGAVLVFMTGWEDISC 543 (913)
Q Consensus 464 ~~~~~~~~~~~~~~i~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~li~~ll~~i~~~~~~g~iLVF~~~~~~i~~ 543 (913)
+++.+++.. .|.|+++.++|.||||+.|..+++.
T Consensus 463 ----------------DYi~eAfrK------------------------------tc~IH~kLP~G~ILVFvTGQqEV~q 496 (1172)
T KOG0926|consen 463 ----------------DYIAEAFRK------------------------------TCKIHKKLPPGGILVFVTGQQEVDQ 496 (1172)
T ss_pred ----------------hHHHHHHHH------------------------------HHHHhhcCCCCcEEEEEeChHHHHH
Confidence 233333332 5778899999999999999999999
Q ss_pred HHHHHHcCCC----------------------------------------------------------------C-----
Q 002521 544 LRDQLKSHPL----------------------------------------------------------------L----- 554 (913)
Q Consensus 544 l~~~L~~~~~----------------------------------------------------------------~----- 554 (913)
+++.|++... +
T Consensus 497 L~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~~~~~~raa~~~~~De~~ 576 (1172)
T KOG0926|consen 497 LCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELVDSGFASLRAAFNALADENG 576 (1172)
T ss_pred HHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhhhhcccchhhhhhhhccccccc
Confidence 9999876210 0
Q ss_pred -----------------------CCCCCeEEEEecCCCChHHHHHHhccCCCCccEEEEecchhhhcCCCCCeEEEEeCC
Q 002521 555 -----------------------GDPNRVLLLTCHGSMPTSEQKFIFEKAPPNIRKIVLATNMAEASITINDIVFVVDCG 611 (913)
Q Consensus 555 -----------------------~~~~~~~v~~lHs~l~~~er~~v~~~f~~g~~kVLVATniae~GIdIp~v~~VId~g 611 (913)
..+...-|++++|-|+.++|.+||+..+.|.+-+|||||+||+++|||+|.||||||
T Consensus 577 ~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAETSLTIPgIkYVVD~G 656 (1172)
T KOG0926|consen 577 SVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAETSLTIPGIKYVVDCG 656 (1172)
T ss_pred cccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEEeccchhcccccCCeeEEEecc
Confidence 001135699999999999999999999999999999999999999999999999999
Q ss_pred CCcceeecCCCCCCcCCccccCHhhHHHHhcccCCCCCcEEEEecChhhHH-hhhhCCCCcccccChhhHHHHHhhcCCC
Q 002521 612 KAKETTYDALNNTPCLLPSWISQASARQRRGRAGRVQPGQCYHLYPRCVYE-AFAEYQLPELLRTPLNSLCLQIKSLQVG 690 (913)
Q Consensus 612 ~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~~~G~c~~L~t~~~~~-~l~~~~~pEi~r~~L~~~~L~lk~l~~~ 690 (913)
..|++.||..++++.|...|||+|++-||+|||||.+||+|||||+...|+ .|.++..|||++.|.++++|++|+|++.
T Consensus 657 r~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtgpGHcYRLYSSAVf~~~Fe~fS~PEIlk~Pve~lvLqMKsMnI~ 736 (1172)
T KOG0926|consen 657 RVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTGPGHCYRLYSSAVFSNDFEEFSLPEILKKPVESLVLQMKSMNID 736 (1172)
T ss_pred chhhhccccccCceeEEEEeeeccccchhccccCCCCCCceeehhhhHHhhcchhhhccHHHhhCcHHHHHHHHHhcCcc
Confidence 999999999999999999999999999999999999999999999999998 6999999999999999999999999999
Q ss_pred CHHHHHHhccCCCchHHHHHHHHHHHHcCCCCCCCCcccccccccccCCChHHHHHHHHhhhccChHHHHHHHhhccCCC
Q 002521 691 SIGEFLSAALQPPEPLAVQNAVDFLKRIGALDEKENLTNLGKFLSMLPVDPKLGKMLVMGAIFRCFDPVLTIVSGLSVRD 770 (913)
Q Consensus 691 ~~~~fl~~~l~pP~~~~i~~al~~L~~~gald~~~~lT~lG~~ls~lpl~p~~~k~ll~~~~~~cl~~~l~i~a~ls~~~ 770 (913)
.+..| .|+.||...+++.|...|..+||||.+|.||+||+.||.+|+.|+++|||+.+-..+|+..++.++++||+.+
T Consensus 737 kVvnF--PFPtpPd~~~L~~Aer~L~~LgALd~~g~lT~lGk~mS~FPlsPrfsKmL~~~~Q~~~lpy~i~lvsaLsv~e 814 (1172)
T KOG0926|consen 737 KVVNF--PFPTPPDRSALEKAERRLKALGALDSNGGLTKLGKAMSLFPLSPRFSKMLATSDQHNLLPYNIALVSALSVYE 814 (1172)
T ss_pred ceecC--CCCCCccHHHHHHHHHHHHHhccccccCCcccccchhcccccChhHHHHHHHHHhhcchhHHHHHHHHHhccc
Confidence 99999 8999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCCh-------------hhH-------------------HHHHHHhcccCCCChhhHHHHHHHHHHHHHHhhcCCcHH
Q 002521 771 PFLLPQ-------------EKK-------------------NLAEIAKSRFSAKDYSDHMALVRAYEGWKDAEREGSGYE 818 (913)
Q Consensus 771 ~f~~p~-------------~~~-------------------~~~~~~~~~~~~~~~sDhl~ll~af~~w~~~~~~~~~~~ 818 (913)
||+.-. +++ .....++.+|. .-.||-|+++.|...+..+. +...
T Consensus 815 ~~i~~~~ll~n~~~r~~~~eE~d~~~~de~~~d~~~K~~rr~~~~aa~~rf~-~l~sd~l~Ll~Av~a~ey~~---~~~r 890 (1172)
T KOG0926|consen 815 VLIVAASLLPNPLIREFEPEEKDLIKDDETVEDKELKKRRREKSKAARSRFS-NLDSDALVLLSAVSAAEYAE---NGMR 890 (1172)
T ss_pred hhhhhhhcccccccccCCcchhhccccccccccHHHHHHHHHHHHHHHhhhc-cCCccHHHHHHHHHHHHhhh---hcch
Confidence 886311 111 11223455665 44589999999998887664 3346
Q ss_pred HHHHhccChhhHHHHHHHHHHHHHHHHHcCCCCCC----CCCC-CCCCCHHHHHHHHHHhcccccccccccCCcccEEe-
Q 002521 819 YCWRNFLSAQTLQAIHSLRKQFTFILRDAGLLDED----GGNN-KLSHNQSLVRAVICSGLFPGITSVVHRETSMSFKT- 892 (913)
Q Consensus 819 ~c~~~~l~~~~l~~~~~~r~ql~~~l~~~~l~~~~----~~~~-~~s~~~~li~~~l~aGl~pnva~~~~~~~~~~y~t- 892 (913)
||..|||..++|.++.++|+||.+++......... .... .......+++.+|||||-..||+.+... .|-+
T Consensus 891 fc~~ngLr~Kam~Ev~KLR~QL~~lv~~~~i~~v~~~~d~~l~ppt~~q~~lLrQ~i~Ag~~DrVArk~~~~---~y~~~ 967 (1172)
T KOG0926|consen 891 FCEANGLRLKAMEEVRKLRKQLTNLVNHGNIQDVEKSWDLTLKPPTDTQAKLLRQMICAGFADRVARKVDAT---EYDAA 967 (1172)
T ss_pred hHHhcchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCCCchHHHHHHHHHHHHHHHHHHHHhcccc---ccchh
Confidence 99999999999999999999999998844332111 0111 1122346899999999999999755332 3443
Q ss_pred ecCCeEEEcCCCccCcCC
Q 002521 893 MDDGQVFLYAVSVQVIVS 910 (913)
Q Consensus 893 ~~~~~v~iHPsSv~~~~~ 910 (913)
.-.++|+|||+||+....
T Consensus 968 ~i~~~~fl~~~svl~~~a 985 (1172)
T KOG0926|consen 968 KIQEPVFLHRWSVLINSA 985 (1172)
T ss_pred hhcCceeeeehhhhhccC
Confidence 446789999999988654
No 10
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=5.2e-82 Score=763.61 Aligned_cols=538 Identities=28% Similarity=0.409 Sum_probs=449.8
Q ss_pred CCcHHHHHHHHHHHHcCCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHHHHHhCCCccc
Q 002521 249 LPSFKEKERLLQAIARNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVSAERGEPLGE 328 (913)
Q Consensus 249 lP~~~~q~~il~~i~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv~~~~~~~~g~ 328 (913)
||++.+.++|+++|.+|+++||+|+|||||||++|+++++... ..++|+|++|||++|.|+++++++++++.+|.
T Consensus 1 LPi~~~~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~-----~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~ 75 (819)
T TIGR01970 1 LPIHAVLPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPG-----IGGKIIMLEPRRLAARSAAQRLASQLGEAVGQ 75 (819)
T ss_pred CCchHHHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhc-----cCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCc
Confidence 7999999999999999999999999999999999999998652 24589999999999999999999999999999
Q ss_pred EeeeEEeccccCCCCceEEEEecHHHHHHHhcCCCCCCceEEEeccccccCcchHHHHHHHHHhCc-cCccceEEEeccc
Q 002521 329 TVGYKVRLEGMKGKNTHLLFCTSGILLRRLLSDHNLNGVTHVFVDEIHERGMNEDFLLIVLKDLLP-RRRDLRLILMSAT 407 (913)
Q Consensus 329 ~vGy~v~~e~~~~~~~~Ivv~T~g~Ll~~l~~~~~L~~~s~IIIDEaHer~~~~d~ll~llk~ll~-~~~~~kiIlmSAT 407 (913)
.|||.++++...+.+++|+|+|+|+|++++..++.|+++++|||||+|||.+++|+++.+++.+.. .++++|+|+||||
T Consensus 76 ~VGy~vr~~~~~s~~t~I~v~T~G~Llr~l~~d~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlqlIlmSAT 155 (819)
T TIGR01970 76 TVGYRVRGENKVSRRTRLEVVTEGILTRMIQDDPELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLKILAMSAT 155 (819)
T ss_pred EEEEEEccccccCCCCcEEEECCcHHHHHHhhCcccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCceEEEEeCC
Confidence 999999999888888999999999999999988999999999999999999999999888777654 4678999999999
Q ss_pred cCHHHHHhhhCCCCeeccCCccccceeeehhhHHhhhcccccccccccchhhhhHHHHhhhhchhhhhhhHHHHHHHHHh
Q 002521 408 LNAELFSNYFGGAPTIHIPGFTYPVQAHFLEDVLEMTGYKLTSLNQVDDYGQEKLWKTQRQLLPRKRKNQITALVEDALH 487 (913)
Q Consensus 408 l~~~~~~~yf~~~~~i~i~g~~~pv~~~yl~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~~l~ 487 (913)
++.+.|.+||++++++.++|+.|||+.+|+.... ...+...+
T Consensus 156 l~~~~l~~~l~~~~vI~~~gr~~pVe~~y~~~~~---------------------------------~~~~~~~v----- 197 (819)
T TIGR01970 156 LDGERLSSLLPDAPVVESEGRSFPVEIRYLPLRG---------------------------------DQRLEDAV----- 197 (819)
T ss_pred CCHHHHHHHcCCCcEEEecCcceeeeeEEeecch---------------------------------hhhHHHHH-----
Confidence 9999999999999999999999999999864200 00000000
Q ss_pred hccccccchhhhhhhccccccccchhhHHHHHHHHhhhcCCCcEEEEcCChHHHHHHHHHHHcCCCCCCCCCeEEEEecC
Q 002521 488 KSNFENYSSRARDSLASWTADCIGFNLIEAVLCHICRKECPGAVLVFMTGWEDISCLRDQLKSHPLLGDPNRVLLLTCHG 567 (913)
Q Consensus 488 ~~~~~~~~~~~~~~l~~~~~~~~~~~li~~ll~~i~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lHs 567 (913)
...+.+++.. ..|++|||+||+.+|+.+++.|.... + .++.+.++||
T Consensus 198 ----------------------------~~~l~~~l~~-~~g~iLVFlpg~~eI~~l~~~L~~~~--~--~~~~v~pLHg 244 (819)
T TIGR01970 198 ----------------------------SRAVEHALAS-ETGSILVFLPGQAEIRRVQEQLAERL--D--SDVLICPLYG 244 (819)
T ss_pred ----------------------------HHHHHHHHHh-cCCcEEEEECCHHHHHHHHHHHHhhc--C--CCcEEEEecC
Confidence 0112222222 36889999999999999999998631 1 3688999999
Q ss_pred CCChHHHHHHhccCCCCccEEEEecchhhhcCCCCCeEEEEeCCCCcceeecCCCCCCcCCccccCHhhHHHHhcccCCC
Q 002521 568 SMPTSEQKFIFEKAPPNIRKIVLATNMAEASITINDIVFVVDCGKAKETTYDALNNTPCLLPSWISQASARQRRGRAGRV 647 (913)
Q Consensus 568 ~l~~~er~~v~~~f~~g~~kVLVATniae~GIdIp~v~~VId~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~ 647 (913)
+|+.++|..+++.|++|.++|||||||||+|||||+|++|||+|+++...||+.++++.|.+.|||+++|.||+|||||.
T Consensus 245 ~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~ 324 (819)
T TIGR01970 245 ELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGITRLETVRISQASATQRAGRAGRL 324 (819)
T ss_pred CCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCcccccccccccCCceeeEEEECHHHHHhhhhhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEecChhhHHhhhhCCCCcccccChhhHHHHHhhcCCCCHHHHHHhccCCCchHHHHHHHHHHHHcCCCCCCCCc
Q 002521 648 QPGQCYHLYPRCVYEAFAEYQLPELLRTPLNSLCLQIKSLQVGSIGEFLSAALQPPEPLAVQNAVDFLKRIGALDEKENL 727 (913)
Q Consensus 648 ~~G~c~~L~t~~~~~~l~~~~~pEi~r~~L~~~~L~lk~l~~~~~~~fl~~~l~pP~~~~i~~al~~L~~~gald~~~~l 727 (913)
++|.||+||++++|..|.++..|||++.+|.+++|+++.+|+.++.+| .|++||+..++..|++.|..+||||++++|
T Consensus 325 ~~G~cyrL~t~~~~~~l~~~~~PEI~r~~L~~~~L~l~~~g~~~~~~~--~~l~~P~~~~i~~a~~~L~~lgald~~~~l 402 (819)
T TIGR01970 325 EPGVCYRLWSEEQHQRLPAQDEPEILQADLSGLALELAQWGAKDPSDL--RWLDAPPSVALAAARQLLQRLGALDAQGRL 402 (819)
T ss_pred CCCEEEEeCCHHHHHhhhcCCCcceeccCcHHHHHHHHHcCCCChhhC--CCCCCcCHHHHHHHHHHHHHCCCCCCCCCc
Confidence 999999999999999999999999999999999999999999999888 899999999999999999999999999999
Q ss_pred ccccccccccCCChHHHHHHHHhhhccChHHHHHHHhhccCCCCCcCChhhHHHHHHHhcccCCCChhhHHHHHHHHHHH
Q 002521 728 TNLGKFLSMLPVDPKLGKMLVMGAIFRCFDPVLTIVSGLSVRDPFLLPQEKKNLAEIAKSRFSAKDYSDHMALVRAYEGW 807 (913)
Q Consensus 728 T~lG~~ls~lpl~p~~~k~ll~~~~~~cl~~~l~i~a~ls~~~~f~~p~~~~~~~~~~~~~~~~~~~sDhl~ll~af~~w 807 (913)
|++|+.|+.||++|++||||+.|+.++|.+++++|||+|+.++++-. ..+|....+.++...
T Consensus 403 T~~G~~~~~lp~~p~l~~~ll~~~~~~~~~~~~~iaa~ls~~~~~~~------------------~~~d~~~~~~~~~~~ 464 (819)
T TIGR01970 403 TAHGKAMAALGCHPRLAAMLLSAHSTGLAALACDLAALLEERGLPRQ------------------GGADLMNRLHRLQQG 464 (819)
T ss_pred CHHHHHHHhcCCCHHHHHHHHHhhhcCCHHHHHHHHHHHcCCCCCCC------------------CcccHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999987421 125765555544321
Q ss_pred HHHhhcCCcHHHHHHhccChhhHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHhcccccccccccCCc
Q 002521 808 KDAEREGSGYEYCWRNFLSAQTLQAIHSLRKQFTFILRDAGLLDEDGGNNKLSHNQSLVRAVICSGLFPGITSVVHRETS 887 (913)
Q Consensus 808 ~~~~~~~~~~~~c~~~~l~~~~l~~~~~~r~ql~~~l~~~~l~~~~~~~~~~s~~~~li~~~l~aGl~pnva~~~~~~~~ 887 (913)
. ...|. .+..+.+|+...+ +....... . ..+.. +-.+++.||-..||+.. ++.
T Consensus 465 ---~-----~~~~~----------~~~~~~~~~~~~~---~~~~~~~~-~--~~~~~-~g~lla~a~pdria~~r--~~~ 517 (819)
T TIGR01970 465 ---R-----QGRGQ----------RAQQLAKKLRRRL---RFSQADSG-A--IASHA-LGLLLALAFPDRIAKRR--GQP 517 (819)
T ss_pred ---c-----hhhHH----------HHHHHHHHHHHHh---CcCcCCCc-c--cccch-HhHHHhhhChHhheecc--CCC
Confidence 0 01121 1223334443322 22100000 0 01111 45577778777898643 333
Q ss_pred ccEEeecCCeEEEcCCCccCcC
Q 002521 888 MSFKTMDDGQVFLYAVSVQVIV 909 (913)
Q Consensus 888 ~~y~t~~~~~v~iHPsSv~~~~ 909 (913)
..|....+..+.++|+|.+++.
T Consensus 518 ~~y~l~~G~~~~l~~~~~l~~~ 539 (819)
T TIGR01970 518 GRYQLANGRGAVLSAEDALARE 539 (819)
T ss_pred CeEECCCCCeeEeCCCCcccCC
Confidence 4576666666999999988764
No 11
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=1.4e-80 Score=753.07 Aligned_cols=527 Identities=31% Similarity=0.435 Sum_probs=440.8
Q ss_pred CCCcHHHHHHHHHHHHcCCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHHHHHhCCCcc
Q 002521 248 SLPSFKEKERLLQAIARNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVSAERGEPLG 327 (913)
Q Consensus 248 ~lP~~~~q~~il~~i~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv~~~~~~~~g 327 (913)
.||++....+|++++.+++++|+.|+|||||||++|+++++... ..++|+|++|||++|.|++++++.++++.+|
T Consensus 3 ~LPi~~~~~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~-----~~~~ilvlqPrR~aA~qia~rva~~l~~~~g 77 (812)
T PRK11664 3 SLPVAAVLPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGG-----INGKIIMLEPRRLAARNVAQRLAEQLGEKPG 77 (812)
T ss_pred CCCHHHHHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCC-----cCCeEEEECChHHHHHHHHHHHHHHhCcccC
Confidence 59999999999999999999999999999999999999997531 2348999999999999999999999999999
Q ss_pred cEeeeEEeccccCCCCceEEEEecHHHHHHHhcCCCCCCceEEEeccccccCcchHHHHHHHHHhCc-cCccceEEEecc
Q 002521 328 ETVGYKVRLEGMKGKNTHLLFCTSGILLRRLLSDHNLNGVTHVFVDEIHERGMNEDFLLIVLKDLLP-RRRDLRLILMSA 406 (913)
Q Consensus 328 ~~vGy~v~~e~~~~~~~~Ivv~T~g~Ll~~l~~~~~L~~~s~IIIDEaHer~~~~d~ll~llk~ll~-~~~~~kiIlmSA 406 (913)
..|||.++++...+.+++|+|+|+|+|++++..++.++++++|||||+|||++++|+++.+++.++. .++++|+|+|||
T Consensus 78 ~~VGy~vr~~~~~~~~t~I~v~T~G~Llr~l~~d~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lqlilmSA 157 (812)
T PRK11664 78 ETVGYRMRAESKVGPNTRLEVVTEGILTRMIQRDPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSA 157 (812)
T ss_pred ceEEEEecCccccCCCCcEEEEChhHHHHHHhhCCCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccceEEEEec
Confidence 9999999999888888999999999999999988999999999999999999999999988877765 467899999999
Q ss_pred ccCHHHHHhhhCCCCeeccCCccccceeeehhhHHhhhcccccccccccchhhhhHHHHhhhhchhhhhhhHHHHHHHHH
Q 002521 407 TLNAELFSNYFGGAPTIHIPGFTYPVQAHFLEDVLEMTGYKLTSLNQVDDYGQEKLWKTQRQLLPRKRKNQITALVEDAL 486 (913)
Q Consensus 407 Tl~~~~~~~yf~~~~~i~i~g~~~pv~~~yl~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~~l 486 (913)
|++.+.+++||++++++.++|+.|||+.+|+.... ...+...+
T Consensus 158 Tl~~~~l~~~~~~~~~I~~~gr~~pV~~~y~~~~~---------------------------------~~~~~~~v---- 200 (812)
T PRK11664 158 TLDNDRLQQLLPDAPVIVSEGRSFPVERRYQPLPA---------------------------------HQRFDEAV---- 200 (812)
T ss_pred CCCHHHHHHhcCCCCEEEecCccccceEEeccCch---------------------------------hhhHHHHH----
Confidence 99999999999999999999999999999864200 00000000
Q ss_pred hhccccccchhhhhhhccccccccchhhHHHHHHHHhhhcCCCcEEEEcCChHHHHHHHHHHHcCCCCCCCCCeEEEEec
Q 002521 487 HKSNFENYSSRARDSLASWTADCIGFNLIEAVLCHICRKECPGAVLVFMTGWEDISCLRDQLKSHPLLGDPNRVLLLTCH 566 (913)
Q Consensus 487 ~~~~~~~~~~~~~~~l~~~~~~~~~~~li~~ll~~i~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lH 566 (913)
...+.+++. ...|.+|||+||+.+|+.+++.|.... ..++.+.++|
T Consensus 201 -----------------------------~~~l~~~l~-~~~g~iLVFlpg~~ei~~l~~~L~~~~----~~~~~v~~Lh 246 (812)
T PRK11664 201 -----------------------------ARATAELLR-QESGSLLLFLPGVGEIQRVQEQLASRV----ASDVLLCPLY 246 (812)
T ss_pred -----------------------------HHHHHHHHH-hCCCCEEEEcCCHHHHHHHHHHHHHhc----cCCceEEEee
Confidence 011222222 236899999999999999999998621 1267899999
Q ss_pred CCCChHHHHHHhccCCCCccEEEEecchhhhcCCCCCeEEEEeCCCCcceeecCCCCCCcCCccccCHhhHHHHhcccCC
Q 002521 567 GSMPTSEQKFIFEKAPPNIRKIVLATNMAEASITINDIVFVVDCGKAKETTYDALNNTPCLLPSWISQASARQRRGRAGR 646 (913)
Q Consensus 567 s~l~~~er~~v~~~f~~g~~kVLVATniae~GIdIp~v~~VId~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR 646 (913)
|+|+.++|.+++..|++|+++|||||||||+|||||+|++|||+|+++...||+.++++.|.+.|||+++|.||+|||||
T Consensus 247 g~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR 326 (812)
T PRK11664 247 GALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGR 326 (812)
T ss_pred CCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccCCcceeEEEeechhhhhhhccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEecChhhHHhhhhCCCCcccccChhhHHHHHhhcCCCCHHHHHHhccCCCchHHHHHHHHHHHHcCCCCCCCC
Q 002521 647 VQPGQCYHLYPRCVYEAFAEYQLPELLRTPLNSLCLQIKSLQVGSIGEFLSAALQPPEPLAVQNAVDFLKRIGALDEKEN 726 (913)
Q Consensus 647 ~~~G~c~~L~t~~~~~~l~~~~~pEi~r~~L~~~~L~lk~l~~~~~~~fl~~~l~pP~~~~i~~al~~L~~~gald~~~~ 726 (913)
.++|.||+||++..|+.|+++..|||+|.+|++++|+++++|+.++.+| .|++||+..++.+|++.|..+||||++++
T Consensus 327 ~~~G~cyrL~t~~~~~~l~~~~~PEI~r~dL~~~~L~l~~~g~~~~~~~--~~ld~P~~~~~~~A~~~L~~lgald~~g~ 404 (812)
T PRK11664 327 LEPGICLHLYSKEQAERAAAQSEPEILHSDLSGLLLELLQWGCHDPAQL--SWLDQPPAAALAAAKRLLQQLGALDGQGR 404 (812)
T ss_pred CCCcEEEEecCHHHHhhCccCCCCceeccchHHHHHHHHHcCCCCHHhC--CCCCCCCHHHHHHHHHHHHHCCCCCCCCC
Confidence 9999999999999999999999999999999999999999999999988 89999999999999999999999999999
Q ss_pred cccccccccccCCChHHHHHHHHhhhccChH--HHHHHHhhccCCCCCcCChhhHHHHHHHhcccCCCChhhHHHHHHHH
Q 002521 727 LTNLGKFLSMLPVDPKLGKMLVMGAIFRCFD--PVLTIVSGLSVRDPFLLPQEKKNLAEIAKSRFSAKDYSDHMALVRAY 804 (913)
Q Consensus 727 lT~lG~~ls~lpl~p~~~k~ll~~~~~~cl~--~~l~i~a~ls~~~~f~~p~~~~~~~~~~~~~~~~~~~sDhl~ll~af 804 (913)
||++|+.|+.||++|++|+||+.|+.++|.. .+..|||.|+.+++ - . ..+.+|++..+.
T Consensus 405 lT~~G~~m~~lp~~Prla~~ll~a~~~~~~~l~~a~~laall~e~~~-~-~---------------~~d~~~~l~~~~-- 465 (812)
T PRK11664 405 LTARGRKMAALGNDPRLAAMLVAAKEDDEAALATAAKLAAILEEPPR-S-G---------------SSDLGVALSRKQ-- 465 (812)
T ss_pred cCHHHHHHHhcCCchHHHHHHHHHHhcCchhhHHHHHHHHhhccCCC-C-C---------------cccHHHHHHHHH--
Confidence 9999999999999999999999999998653 56667777765421 0 0 112234443111
Q ss_pred HHHHHHhhcCCcHHHHHHhccChhhHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHhccccccccccc
Q 002521 805 EGWKDAEREGSGYEYCWRNFLSAQTLQAIHSLRKQFTFILRDAGLLDEDGGNNKLSHNQSLVRAVICSGLFPGITSVVHR 884 (913)
Q Consensus 805 ~~w~~~~~~~~~~~~c~~~~l~~~~l~~~~~~r~ql~~~l~~~~l~~~~~~~~~~s~~~~li~~~l~aGl~pnva~~~~~ 884 (913)
..|+. .+..+.+|+... .+ . .+.+.+..+||+||..+||+..
T Consensus 466 ------------~~~~~----------~~~~~~~~~~~~---~~--~---------~~~~~~~~~la~aypdriA~~r-- 507 (812)
T PRK11664 466 ------------PHWQQ----------RAQQLLKRLNVR---GG--E---------ADSSLIAPLLALAFPDRIARRR-- 507 (812)
T ss_pred ------------HHHHH----------HHHHHHHHHHhh---cc--c---------CChHHHHHHHHHHCHHHHhhhc--
Confidence 12322 233334443221 11 0 1234588899999999999753
Q ss_pred CCcccEEeecCCeEEEcCCCccCcC
Q 002521 885 ETSMSFKTMDDGQVFLYAVSVQVIV 909 (913)
Q Consensus 885 ~~~~~y~t~~~~~v~iHPsSv~~~~ 909 (913)
+....|....+..+.|||+|.+++.
T Consensus 508 ~~~~~~~l~~G~~a~l~~~~~l~~~ 532 (812)
T PRK11664 508 GQDGRYQLANGMGAMLDADDALSRH 532 (812)
T ss_pred CCCCeEEeeCCCeEEECCCCcccCC
Confidence 3333454444445999999998754
No 12
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=100.00 E-value=1.8e-73 Score=644.80 Aligned_cols=661 Identities=37% Similarity=0.653 Sum_probs=560.9
Q ss_pred cCchhhhHHhhhcCCCcHHHHHHHHHHHHcCCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHH
Q 002521 235 ESPEGNKMLDFRKSLPSFKEKERLLQAIARNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAV 314 (913)
Q Consensus 235 ~~~~~~~l~~~r~~lP~~~~q~~il~~i~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qv 314 (913)
..+++..++.+|..+|+..+.++|++++..|++++|.++|||||||++.++||+..+++..+....+.++||||+.|+.+
T Consensus 363 ~d~e~~~~~a~re~lpva~~~~~i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisi 442 (1282)
T KOG0921|consen 363 RDEALDKITAQREELPVAQYRSEILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISL 442 (1282)
T ss_pred cccchhhhhhhhhhCcHHHHHHHHHHHHhcCceeeEeecccccchhHHHHHHHHHHhhccccccccceeccccccchHHH
Confidence 46688889999999999999999999999999999999999999999999999999999988888999999999999999
Q ss_pred HHHHHHHhCCCcccEeeeEEeccccCCCC-ceEEEEecHHHHHHHhcCCCCCCceEEEeccccccCcchHHHHHHHHHhC
Q 002521 315 SERVSAERGEPLGETVGYKVRLEGMKGKN-THLLFCTSGILLRRLLSDHNLNGVTHVFVDEIHERGMNEDFLLIVLKDLL 393 (913)
Q Consensus 315 a~rv~~~~~~~~g~~vGy~v~~e~~~~~~-~~Ivv~T~g~Ll~~l~~~~~L~~~s~IIIDEaHer~~~~d~ll~llk~ll 393 (913)
+++|+.++++.+|..|||++|+++..+.. ..|.+||-|.+++++.+ -+..++|+|+||+|+|.+++||++.+++.+.
T Consensus 443 aerva~er~e~~g~tvgy~vRf~Sa~prpyg~i~fctvgvllr~~e~--glrg~sh~i~deiherdv~~dfll~~lr~m~ 520 (1282)
T KOG0921|consen 443 AERVANERGEEVGETCGYNVRFDSATPRPYGSIMFCTVGVLLRMMEN--GLRGISHVIIDEIHERDVDTDFVLIVLREMI 520 (1282)
T ss_pred HHHHHHhhHHhhcccccccccccccccccccceeeeccchhhhhhhh--cccccccccchhhhhhccchHHHHHHHHhhh
Confidence 99999999999999999999999987643 67999999999999864 5778999999999999999999999999999
Q ss_pred ccCccceEEEeccccCHHHHHhhhCCCCeeccCCccccceeeehhhHHhhhcccccccccccchhhhhHHHHhhhhchhh
Q 002521 394 PRRRDLRLILMSATLNAELFSNYFGGAPTIHIPGFTYPVQAHFLEDVLEMTGYKLTSLNQVDDYGQEKLWKTQRQLLPRK 473 (913)
Q Consensus 394 ~~~~~~kiIlmSATl~~~~~~~yf~~~~~i~i~g~~~pv~~~yl~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (913)
...+++++++||||++.+.|..||+.+|.+.+.|+++|+..+|++++..++.+.+........+..+... .....
T Consensus 521 ~ty~dl~v~lmsatIdTd~f~~~f~~~p~~~~~grt~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~~~-----~~~~d 595 (1282)
T KOG0921|consen 521 STYRDLRVVLMSATIDTDLFTNFFSSIPDVTVHGRTFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEE-----DEEVD 595 (1282)
T ss_pred ccchhhhhhhhhcccchhhhhhhhccccceeeccccccHHHHHHHHhhhhhhccCCCcCccchhhccccc-----Cchhh
Confidence 9999999999999999999999999999999999999999999999998877655443222111100000 00000
Q ss_pred hhhhHHHHHHHHHhhccccccchhhhhhhccccccccchhhHHHHHHHHhhhcCCCcEEEEcCChHHHHHHHHHHHcCCC
Q 002521 474 RKNQITALVEDALHKSNFENYSSRARDSLASWTADCIGFNLIEAVLCHICRKECPGAVLVFMTGWEDISCLRDQLKSHPL 553 (913)
Q Consensus 474 ~~~~i~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~li~~ll~~i~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~ 553 (913)
.+.. ......-..+...+...........+.+.++++++.+|....-.|.|+||+++|..+..|..+|..+..
T Consensus 596 dK~~-------n~n~~~dd~~~~~~~~am~~~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~ 668 (1282)
T KOG0921|consen 596 DKGR-------NMNILCDPSYNESTRTAMSRLSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQE 668 (1282)
T ss_pred hccc-------ccccccChhhcchhhhhhhcchhhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhh
Confidence 0000 000000111122222223333445667889999999999888899999999999999999999999888
Q ss_pred CCCCCCeEEEEecCCCChHHHHHHhccCCCCccEEEEecchhhhcCCCCCeEEEEeCCCCcceeecCCCCCCcCCccccC
Q 002521 554 LGDPNRVLLLTCHGSMPTSEQKFIFEKAPPNIRKIVLATNMAEASITINDIVFVVDCGKAKETTYDALNNTPCLLPSWIS 633 (913)
Q Consensus 554 ~~~~~~~~v~~lHs~l~~~er~~v~~~f~~g~~kVLVATniae~GIdIp~v~~VId~g~~k~~~yd~~~~~~~l~~~~iS 633 (913)
++....+.++++|+.++..+|.+|++..+.|..|+|++|++++++|+|.++++|||.+..+.+.|...+++..+.+.|.|
T Consensus 669 fg~~~~y~ilp~Hsq~~~~eqrkvf~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~s 748 (1282)
T KOG0921|consen 669 FGQANKYEILPLHSQLTSQEQRKVFEPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWAS 748 (1282)
T ss_pred hccchhcccccchhhcccHhhhhccCcccccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeeccc
Confidence 88888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhHHHHhcccCCCCCcEEEEecChhhHHhhhhCCCCcccccChhhHHHHHhhcCCCCHHHHHHhccCCCchHHHHHHHH
Q 002521 634 QASARQRRGRAGRVQPGQCYHLYPRCVYEAFAEYQLPELLRTPLNSLCLQIKSLQVGSIGEFLSAALQPPEPLAVQNAVD 713 (913)
Q Consensus 634 ka~~~QR~GRAGR~~~G~c~~L~t~~~~~~l~~~~~pEi~r~~L~~~~L~lk~l~~~~~~~fl~~~l~pP~~~~i~~al~ 713 (913)
+-+..||.||+||+++|.||++.++..|+.+.++..||+.|++|.++.|.+|.+.+.++..|+..+++||+..++..+-.
T Consensus 749 ktn~eqr~gr~grvR~G~~f~lcs~arF~~l~~~~t~em~r~plhemalTikll~l~SI~~fl~kal~~~p~dav~e~e~ 828 (1282)
T KOG0921|consen 749 KTNLEQRKGRAGRVRPGFCFHLCSRARFEALEDHGTAEMFRTPLHEIALTIKLLRLGSIGEFLGKALQPPPYDAVIEAEA 828 (1282)
T ss_pred ccchHhhcccCceecccccccccHHHHHHHHHhcCcHhhhcCccHHHHhhHHHHHhhhHHHHHhhccCCCchhhccCchH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCCCCCcccccccccccCCChHHHHHHHHhhhccChHHHHHHHhhccCCCCCcCChhhHHHHHHHhcccCCCC
Q 002521 714 FLKRIGALDEKENLTNLGKFLSMLPVDPKLGKMLVMGAIFRCFDPVLTIVSGLSVRDPFLLPQEKKNLAEIAKSRFSAKD 793 (913)
Q Consensus 714 ~L~~~gald~~~~lT~lG~~ls~lpl~p~~~k~ll~~~~~~cl~~~l~i~a~ls~~~~f~~p~~~~~~~~~~~~~~~~~~ 793 (913)
.|..++++|.++.+|++|+.++++|+.|.++||++.|..++|.+-+...|+.+++..||..-..........++.|++..
T Consensus 829 ~l~~m~~ld~n~elt~lg~~la~l~iep~~~k~~~lg~~~g~~~~m~~~as~~s~~~~~~~~~~~~~rl~g~q~~~~g~k 908 (1282)
T KOG0921|consen 829 VLREMGALDANDELTPLGRMLARLPIEPRIGKMMILGTALGAGSVMCDVASAMSFPTPFVPREKHHSRLSGTQRKFAGNK 908 (1282)
T ss_pred HHHHhhhhhccCcccchhhhhhhccCcccccceeeechhhccchhhhhhhcccccccccccccccccccccchhhccccc
Confidence 99999999999999999999999999999999999999999999999999999999888754322222223345566666
Q ss_pred hhhHHHHHHHHHHHHHHhhcC--CcHHHHHHhccChhhHHHHHHHHHHHHHHHHHcCCCCCC---CCCCCCCC--CHHHH
Q 002521 794 YSDHMALVRAYEGWKDAEREG--SGYEYCWRNFLSAQTLQAIHSLRKQFTFILRDAGLLDED---GGNNKLSH--NQSLV 866 (913)
Q Consensus 794 ~sDhl~ll~af~~w~~~~~~~--~~~~~c~~~~l~~~~l~~~~~~r~ql~~~l~~~~l~~~~---~~~~~~s~--~~~li 866 (913)
.|||.+...+-+.|..+...+ .+.+||.+.+++...|.+...+|.|++..|+.++++... -..+.|+. +..++
T Consensus 909 fsdhva~~~v~q~~r~~~q~ga~~e~efc~r~~l~~~~~~~t~~a~~ql~d~L~q~~fpe~~~~~~~v~~ng~d~~l~~~ 988 (1282)
T KOG0921|consen 909 FSDHVAIVSVIQGYREAVQMGAAAEREFCERYSLSNPVLKMTDGARRQLIDVLRQCSFPEDILFDISVNVNGPDRELNLM 988 (1282)
T ss_pred cccchhhhhhhhhhHHHhhhhhhhhhhHhHhhhhcchhhhhhhhhHHHHHHHHHhccCccccccceeeccCCCCchhHHH
Confidence 666666666665555544332 467999999999999999999999999999999887543 22234443 34678
Q ss_pred HHHHHHhcccccccccccCCcccEEeecCCeEEEcCCCccCcCCCC
Q 002521 867 RAVICSGLFPGITSVVHRETSMSFKTMDDGQVFLYAVSVQVIVSNQ 912 (913)
Q Consensus 867 ~~~l~aGl~pnva~~~~~~~~~~y~t~~~~~v~iHPsSv~~~~~~~ 912 (913)
+..||+++|||+|... ++++.+ |.+.+...||-.|||+.-+.|
T Consensus 989 ~~lL~~~lypn~~~y~--ekrkvL-tTe~~~alihk~Svncp~S~q 1031 (1282)
T KOG0921|consen 989 RSLLVMALYPNVAYYV--EKRKVL-TTEQSSALIHKYSVNCPNSRQ 1031 (1282)
T ss_pred HHHHHhhcCCccceec--cceeEE-eecchhhhhhhhcccCCCccc
Confidence 9999999999999654 444444 556777889999988854433
No 13
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=1.3e-55 Score=522.46 Aligned_cols=401 Identities=21% Similarity=0.335 Sum_probs=310.0
Q ss_pred HHHHHHHHHHHcCCeEEEEcCCCchHHhHHHHHHHHH-----HHHh-----CCCCceEEEEcchhHHHHHHHHHHHHHHh
Q 002521 253 KEKERLLQAIARNQVIVISGETGCGKTTQLPQYILES-----EIES-----GRGAFCNIICTQPRRISAMAVSERVSAER 322 (913)
Q Consensus 253 ~~q~~il~~i~~~~~vII~apTGSGKTt~~~~~ile~-----~~~~-----~~~~~~~Ilv~qPrr~La~qva~rv~~~~ 322 (913)
..|+++++.+.+++++|+.|+||||||+|+||++++. .+.. ..+..+.|+|++|||+||.|++.++.+..
T Consensus 167 ~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~qi~~~i~~~v 246 (675)
T PHA02653 167 DVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRLHSITLLKSL 246 (675)
T ss_pred HHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHHHHHHHHHHh
Confidence 4578999999999999999999999999999999874 1211 12234689999999999999999998877
Q ss_pred CCCcccEeeeEEeccccC-------CCCceEEEEecHHHHHHHhcCCCCCCceEEEeccccccCcchHHHHHHHHHhCcc
Q 002521 323 GEPLGETVGYKVRLEGMK-------GKNTHLLFCTSGILLRRLLSDHNLNGVTHVFVDEIHERGMNEDFLLIVLKDLLPR 395 (913)
Q Consensus 323 ~~~~g~~vGy~v~~e~~~-------~~~~~Ivv~T~g~Ll~~l~~~~~L~~~s~IIIDEaHer~~~~d~ll~llk~ll~~ 395 (913)
|......+.+.++++... ....+|+++|++.. .+.|+++++|||||||||...+|+++.+++.....
T Consensus 247 g~~~~~g~~v~v~~Gg~~~~~~~t~~k~~~Ilv~T~~L~------l~~L~~v~~VVIDEaHEr~~~~DllL~llk~~~~~ 320 (675)
T PHA02653 247 GFDEIDGSPISLKYGSIPDELINTNPKPYGLVFSTHKLT------LNKLFDYGTVIIDEVHEHDQIGDIIIAVARKHIDK 320 (675)
T ss_pred CccccCCceEEEEECCcchHHhhcccCCCCEEEEeCccc------ccccccCCEEEccccccCccchhHHHHHHHHhhhh
Confidence 643222223344443332 12457999998742 24688999999999999999999999998877654
Q ss_pred CccceEEEeccccC--HHHHHhhhCCCCeeccCCcc-ccceeeehhhHHhhhcccccccccccchhhhhHHHHhhhhchh
Q 002521 396 RRDLRLILMSATLN--AELFSNYFGGAPTIHIPGFT-YPVQAHFLEDVLEMTGYKLTSLNQVDDYGQEKLWKTQRQLLPR 472 (913)
Q Consensus 396 ~~~~kiIlmSATl~--~~~~~~yf~~~~~i~i~g~~-~pv~~~yl~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (913)
.+ |+++||||++ .+.|.+||++++.+.++|++ +||+.+|+++.... . ...+
T Consensus 321 ~r--q~ILmSATl~~dv~~l~~~~~~p~~I~I~grt~~pV~~~yi~~~~~~-------~-~~~~---------------- 374 (675)
T PHA02653 321 IR--SLFLMTATLEDDRDRIKEFFPNPAFVHIPGGTLFPISEVYVKNKYNP-------K-NKRA---------------- 374 (675)
T ss_pred cC--EEEEEccCCcHhHHHHHHHhcCCcEEEeCCCcCCCeEEEEeecCccc-------c-cchh----------------
Confidence 32 8999999995 45889999999999999986 99999997642100 0 0000
Q ss_pred hhhhhHHHHHHHHHhhccccccchhhhhhhccccccccchhhHHHHHHHHhh--hcCCCcEEEEcCChHHHHHHHHHHHc
Q 002521 473 KRKNQITALVEDALHKSNFENYSSRARDSLASWTADCIGFNLIEAVLCHICR--KECPGAVLVFMTGWEDISCLRDQLKS 550 (913)
Q Consensus 473 ~~~~~i~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~li~~ll~~i~~--~~~~g~iLVF~~~~~~i~~l~~~L~~ 550 (913)
.++.. ...++..+.. ...++++|||+||+.+++.+++.|..
T Consensus 375 --------y~~~~-----------------------------k~~~l~~L~~~~~~~~g~iLVFlpg~~ei~~l~~~L~~ 417 (675)
T PHA02653 375 --------YIEEE-----------------------------KKNIVTALKKYTPPKGSSGIVFVASVSQCEEYKKYLEK 417 (675)
T ss_pred --------hhHHH-----------------------------HHHHHHHHHHhhcccCCcEEEEECcHHHHHHHHHHHHh
Confidence 00000 0000111111 12357899999999999999999986
Q ss_pred CCCCCCCCCeEEEEecCCCChHHHHHHhccC-CCCccEEEEecchhhhcCCCCCeEEEEeCCCCcceeecCCCCCCcCCc
Q 002521 551 HPLLGDPNRVLLLTCHGSMPTSEQKFIFEKA-PPNIRKIVLATNMAEASITINDIVFVVDCGKAKETTYDALNNTPCLLP 629 (913)
Q Consensus 551 ~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f-~~g~~kVLVATniae~GIdIp~v~~VId~g~~k~~~yd~~~~~~~l~~ 629 (913)
.. +++.+.++||+|++.+ .+++.| ++|+++||||||+||+|||||+|++|||+|+++.+. +..+ ..
T Consensus 418 ~~-----~~~~v~~LHG~Lsq~e--q~l~~ff~~gk~kILVATdIAERGIDIp~V~~VID~G~~k~p~--~~~g----~~ 484 (675)
T PHA02653 418 RL-----PIYDFYIIHGKVPNID--EILEKVYSSKNPSIIISTPYLESSVTIRNATHVYDTGRVYVPE--PFGG----KE 484 (675)
T ss_pred hc-----CCceEEeccCCcCHHH--HHHHHHhccCceeEEeccChhhccccccCeeEEEECCCccCCC--cccC----cc
Confidence 41 2578999999999764 444555 789999999999999999999999999999876442 2222 35
Q ss_pred cccCHhhHHHHhcccCCCCCcEEEEecChhhHHhhhhCCCCcccccC---hhhHHHHHhhcCCCCHHHHHHhccCCCchH
Q 002521 630 SWISQASARQRRGRAGRVQPGQCYHLYPRCVYEAFAEYQLPELLRTP---LNSLCLQIKSLQVGSIGEFLSAALQPPEPL 706 (913)
Q Consensus 630 ~~iSka~~~QR~GRAGR~~~G~c~~L~t~~~~~~l~~~~~pEi~r~~---L~~~~L~lk~l~~~~~~~fl~~~l~pP~~~ 706 (913)
.|+|+++|.||+|||||.++|.||+||+++.+ .| |.+.+ |..++|+++++|++.+..+ |++||+..
T Consensus 485 ~~iSkasa~QRaGRAGR~~~G~c~rLyt~~~~-------~p-I~ri~~~~L~~~vL~lk~~g~~~~~~~---~ldpP~~~ 553 (675)
T PHA02653 485 MFISKSMRTQRKGRVGRVSPGTYVYFYDLDLL-------KP-IKRIDSEFLHNYILYAKYFNLTLPEDL---FVIPSNLD 553 (675)
T ss_pred cccCHHHHHHhccCcCCCCCCeEEEEECHHHh-------HH-HHHHhHHHHHHHHHHHHHcCCCCcccc---cCCCCCHH
Confidence 69999999999999999999999999999874 23 56666 8899999999999665543 89999999
Q ss_pred HHHHHHHHHHHcCCCCCCCCcccc--cccccccCCChHHHHHHHHhhh
Q 002521 707 AVQNAVDFLKRIGALDEKENLTNL--GKFLSMLPVDPKLGKMLVMGAI 752 (913)
Q Consensus 707 ~i~~al~~L~~~gald~~~~lT~l--G~~ls~lpl~p~~~k~ll~~~~ 752 (913)
++.+|++.|..+||+|+ +||.| |+.++.+ +.||++++|+.
T Consensus 554 ~l~~A~~~L~~lga~~~--~l~~l~~~~~~~~~----~~~k~~~~g~~ 595 (675)
T PHA02653 554 RLRKTEEYIDSFNISIE--KWYEILSNYYVNML----EYAKIYVKGGI 595 (675)
T ss_pred HHHHHHHHHHHcCCCch--hhhhhhccccHHHH----HHhHHHhcccH
Confidence 99999999999998865 79999 9999999 99999988764
No 14
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=1.2e-40 Score=405.63 Aligned_cols=436 Identities=22% Similarity=0.235 Sum_probs=291.3
Q ss_pred CCCcHHHHHHHHHHHHcCCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHHHHHhCCCcc
Q 002521 248 SLPSFKEKERLLQAIARNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVSAERGEPLG 327 (913)
Q Consensus 248 ~lP~~~~q~~il~~i~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv~~~~~~~~g 327 (913)
.+.++++|.++++.+.++++++++||||||||+++.+++++.+.. +. +++++.|+++||.|+++.+.+.. ..|
T Consensus 20 ~~~l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~---~~--k~v~i~P~raLa~q~~~~~~~l~--~~g 92 (674)
T PRK01172 20 DFELYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLA---GL--KSIYIVPLRSLAMEKYEELSRLR--SLG 92 (674)
T ss_pred CCCCCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHh---CC--cEEEEechHHHHHHHHHHHHHHh--hcC
Confidence 345788999999999999999999999999999999999987643 22 45555699999999999997632 234
Q ss_pred cEeeeEEecccc---CCCCceEEEEecHHHHHHHhcCC-CCCCceEEEeccccccC--cchHHHHHHHHHhCccCccceE
Q 002521 328 ETVGYKVRLEGM---KGKNTHLLFCTSGILLRRLLSDH-NLNGVTHVFVDEIHERG--MNEDFLLIVLKDLLPRRRDLRL 401 (913)
Q Consensus 328 ~~vGy~v~~e~~---~~~~~~Ivv~T~g~Ll~~l~~~~-~L~~~s~IIIDEaHer~--~~~d~ll~llk~ll~~~~~~ki 401 (913)
..++..+..... ....++|+|+||+.+...+...+ .+.++++|||||+|..+ .....+..++..+...+++.|+
T Consensus 93 ~~v~~~~G~~~~~~~~~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~l~d~~rg~~le~ll~~~~~~~~~~ri 172 (674)
T PRK01172 93 MRVKISIGDYDDPPDFIKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHIIGDEDRGPTLETVLSSARYVNPDARI 172 (674)
T ss_pred CeEEEEeCCCCCChhhhccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchhccCCCccHHHHHHHHHHHhcCcCCcE
Confidence 444443321111 11357999999999988877665 58999999999999653 1222333344444444567899
Q ss_pred EEecccc-CHHHHHhhhCCCCeeccCCccccceeeehhhHHhhhcccccccccccchhhhhHHHHhhhhchhhhhhhHHH
Q 002521 402 ILMSATL-NAELFSNYFGGAPTIHIPGFTYPVQAHFLEDVLEMTGYKLTSLNQVDDYGQEKLWKTQRQLLPRKRKNQITA 480 (913)
Q Consensus 402 IlmSATl-~~~~~~~yf~~~~~i~i~g~~~pv~~~yl~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 480 (913)
|+||||+ +...+++|++. +.+....+..|++....... ... .+.. ....
T Consensus 173 I~lSATl~n~~~la~wl~~-~~~~~~~r~vpl~~~i~~~~----~~~------~~~~--------------~~~~----- 222 (674)
T PRK01172 173 LALSATVSNANELAQWLNA-SLIKSNFRPVPLKLGILYRK----RLI------LDGY--------------ERSQ----- 222 (674)
T ss_pred EEEeCccCCHHHHHHHhCC-CccCCCCCCCCeEEEEEecC----eee------eccc--------------cccc-----
Confidence 9999999 78899999974 44555566666654321100 000 0000 0000
Q ss_pred HHHHHHhhccccccchhhhhhhccccccccchhhHHHHHHHHhhhcCCCcEEEEcCChHHHHHHHHHHHcCCCCC-C---
Q 002521 481 LVEDALHKSNFENYSSRARDSLASWTADCIGFNLIEAVLCHICRKECPGAVLVFMTGWEDISCLRDQLKSHPLLG-D--- 556 (913)
Q Consensus 481 ~v~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~li~~ll~~i~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~~-~--- 556 (913)
..+..++.... ..++++||||+++++++.++..|....... .
T Consensus 223 --------------------------------~~~~~~i~~~~--~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~ 268 (674)
T PRK01172 223 --------------------------------VDINSLIKETV--NDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKV 268 (674)
T ss_pred --------------------------------ccHHHHHHHHH--hCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccc
Confidence 00111122211 246789999999999999999886531100 0
Q ss_pred --------------CCCeEEEEecCCCChHHHHHHhccCCCCccEEEEecchhhhcCCCCCeEEEEeCCCCcceeecCCC
Q 002521 557 --------------PNRVLLLTCHGSMPTSEQKFIFEKAPPNIRKIVLATNMAEASITINDIVFVVDCGKAKETTYDALN 622 (913)
Q Consensus 557 --------------~~~~~v~~lHs~l~~~er~~v~~~f~~g~~kVLVATniae~GIdIp~v~~VId~g~~k~~~yd~~~ 622 (913)
.....+.++||+|+.++|..+++.|++|.++|||||+++++|||+|+..+||+ +.++ |+.
T Consensus 269 ~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~~f~~g~i~VLvaT~~la~Gvnipa~~VII~-~~~~---~~~-- 342 (674)
T PRK01172 269 SSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEEMFRNRYIKVIVATPTLAAGVNLPARLVIVR-DITR---YGN-- 342 (674)
T ss_pred cccccccccHHHHHHHhcCEEEecCCCCHHHHHHHHHHHHcCCCeEEEecchhhccCCCcceEEEEc-CceE---eCC--
Confidence 00135889999999999999999999999999999999999999999877774 3332 432
Q ss_pred CCCcCCccccCHhhHHHHhcccCCCC---CcEEEEec-ChhhHHhhhhC--CCCcccccChh------hHHHHHhhcC--
Q 002521 623 NTPCLLPSWISQASARQRRGRAGRVQ---PGQCYHLY-PRCVYEAFAEY--QLPELLRTPLN------SLCLQIKSLQ-- 688 (913)
Q Consensus 623 ~~~~l~~~~iSka~~~QR~GRAGR~~---~G~c~~L~-t~~~~~~l~~~--~~pEi~r~~L~------~~~L~lk~l~-- 688 (913)
....++|.++|.||+|||||.+ .|.++.+. +...++.+..+ ..|+...+.|. ..+|.....+
T Consensus 343 ----~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~~~~~~~~~~l~~~~~pi~S~l~~~~~~~~~~l~~i~~g~~ 418 (674)
T PRK01172 343 ----GGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASPASYDAAKKYLSGEPEPVISYMGSQRKVRFNTLAAISMGLA 418 (674)
T ss_pred ----CCceeCCHHHHHHHhhcCCCCCCCCcceEEEEecCcccHHHHHHHHcCCCCceeecCCCcccHHHHHHHHHHhccc
Confidence 2234689999999999999984 67777664 33323322111 12322222221 1123333333
Q ss_pred --CCCHHHHHHh-cc--CCC-c--hHHHHHHHHHHHHcCCCCCCC--CcccccccccccCCChHHHHHHHHhhhcc-ChH
Q 002521 689 --VGSIGEFLSA-AL--QPP-E--PLAVQNAVDFLKRIGALDEKE--NLTNLGKFLSMLPVDPKLGKMLVMGAIFR-CFD 757 (913)
Q Consensus 689 --~~~~~~fl~~-~l--~pP-~--~~~i~~al~~L~~~gald~~~--~lT~lG~~ls~lpl~p~~~k~ll~~~~~~-cl~ 757 (913)
..++.+|+.. |+ +++ . .+.++.|++.|.+.|+|+.++ .+|++|++++.+|++|..++++..+..-. ..+
T Consensus 419 ~~~~d~~~~l~~tf~~~~~~~~~l~~~v~~~l~~L~~~~~i~~~~~~~~t~lG~~~s~~~l~~~t~~~~~~~l~~~~~~~ 498 (674)
T PRK01172 419 SSMEDLILFYNETLMAIQNGVDEIDYYIESSLKFLKENGFIKGDVTLRATRLGKLTSDLYIDPESALILKSAFDHDYDED 498 (674)
T ss_pred CCHHHHHHHHHhhhhHhcCchHHHHHHHHHHHHHHHHCCCcccCCcEeECHHHHHHHHhCCCHHHHHHHHHHhhccCCHH
Confidence 3455666432 12 332 2 467999999999999998654 67999999999999999999988765432 333
Q ss_pred HHHHHHh
Q 002521 758 PVLTIVS 764 (913)
Q Consensus 758 ~~l~i~a 764 (913)
.+|.+++
T Consensus 499 ~~l~~~~ 505 (674)
T PRK01172 499 LALYYIS 505 (674)
T ss_pred HHHHHhh
Confidence 4444443
No 15
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=4.4e-40 Score=403.36 Aligned_cols=439 Identities=19% Similarity=0.208 Sum_probs=287.7
Q ss_pred CcHHHHHHHHHH-HHcCCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHHHHHh--CCCc
Q 002521 250 PSFKEKERLLQA-IARNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVSAER--GEPL 326 (913)
Q Consensus 250 P~~~~q~~il~~-i~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv~~~~--~~~~ 326 (913)
-.++.|.++++. +..+++++++||||||||+++.+++++.+.. + .++++++|+++||.|+++.+.... |..+
T Consensus 23 ~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~---~--~kal~i~P~raLa~q~~~~~~~~~~~g~~v 97 (737)
T PRK02362 23 ELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIAR---G--GKALYIVPLRALASEKFEEFERFEELGVRV 97 (737)
T ss_pred cCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhc---C--CcEEEEeChHHHHHHHHHHHHHhhcCCCEE
Confidence 355678888887 7889999999999999999999999987742 2 356666699999999999998532 3333
Q ss_pred ccEeeeEEeccccCCCCceEEEEecHHHHHHHhcCC-CCCCceEEEeccccccC--cchHHHHHHHHHhCccCccceEEE
Q 002521 327 GETVGYKVRLEGMKGKNTHLLFCTSGILLRRLLSDH-NLNGVTHVFVDEIHERG--MNEDFLLIVLKDLLPRRRDLRLIL 403 (913)
Q Consensus 327 g~~vGy~v~~e~~~~~~~~Ivv~T~g~Ll~~l~~~~-~L~~~s~IIIDEaHer~--~~~d~ll~llk~ll~~~~~~kiIl 403 (913)
+...|-..... ......+|+||||+.+..++.+.. ++.++++|||||+|..+ -....+..++.++....++.|+|+
T Consensus 98 ~~~tGd~~~~~-~~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H~l~d~~rg~~le~il~rl~~~~~~~qii~ 176 (737)
T PRK02362 98 GISTGDYDSRD-EWLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVHLIDSANRGPTLEVTLAKLRRLNPDLQVVA 176 (737)
T ss_pred EEEeCCcCccc-cccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECccccCCCcchHHHHHHHHHHHhcCCCCcEEE
Confidence 22223111111 111357999999999988876544 78999999999999532 122233333444444556789999
Q ss_pred ecccc-CHHHHHhhhCCCCeeccCCccccceeeeh-hhHHhhhcccccccccccchhhhhHHHHhhhhchhhhhhhHHHH
Q 002521 404 MSATL-NAELFSNYFGGAPTIHIPGFTYPVQAHFL-EDVLEMTGYKLTSLNQVDDYGQEKLWKTQRQLLPRKRKNQITAL 481 (913)
Q Consensus 404 mSATl-~~~~~~~yf~~~~~i~i~g~~~pv~~~yl-~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 481 (913)
||||+ +++.+++|++.. .+....++.|+..... .+... .. + ....
T Consensus 177 lSATl~n~~~la~wl~~~-~~~~~~rpv~l~~~v~~~~~~~-----~~------~---------~~~~------------ 223 (737)
T PRK02362 177 LSATIGNADELADWLDAE-LVDSEWRPIDLREGVFYGGAIH-----FD------D---------SQRE------------ 223 (737)
T ss_pred EcccCCCHHHHHHHhCCC-cccCCCCCCCCeeeEecCCeec-----cc------c---------cccc------------
Confidence 99999 778999999743 2222333333332110 00000 00 0 0000
Q ss_pred HHHHHhhccccccchhhhhhhccccccccchhhHHHHHHHHhhhcCCCcEEEEcCChHHHHHHHHHHHcCCC--C-----
Q 002521 482 VEDALHKSNFENYSSRARDSLASWTADCIGFNLIEAVLCHICRKECPGAVLVFMTGWEDISCLRDQLKSHPL--L----- 554 (913)
Q Consensus 482 v~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~li~~ll~~i~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~--~----- 554 (913)
+. . .........+.... ..++++||||+++.+++.++..|..... +
T Consensus 224 ----~~----------------~-----~~~~~~~~~~~~~~--~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~ 276 (737)
T PRK02362 224 ----VE----------------V-----PSKDDTLNLVLDTL--EEGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAER 276 (737)
T ss_pred ----CC----------------C-----ccchHHHHHHHHHH--HcCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHH
Confidence 00 0 00000111122222 2467899999999999999888865310 0
Q ss_pred -------------C---------CCCCeEEEEecCCCChHHHHHHhccCCCCccEEEEecchhhhcCCCCCeEEEEeCCC
Q 002521 555 -------------G---------DPNRVLLLTCHGSMPTSEQKFIFEKAPPNIRKIVLATNMAEASITINDIVFVVDCGK 612 (913)
Q Consensus 555 -------------~---------~~~~~~v~~lHs~l~~~er~~v~~~f~~g~~kVLVATniae~GIdIp~v~~VId~g~ 612 (913)
. ......|.+|||+|++.+|+.+++.|++|.++|||||+++++|||+|++++||+.
T Consensus 277 ~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~-- 354 (737)
T PRK02362 277 AELAELAEEIREVSDTETSKDLADCVAKGAAFHHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRD-- 354 (737)
T ss_pred HHHHHHHHHHHhccCccccHHHHHHHHhCEEeecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEec--
Confidence 0 0002468999999999999999999999999999999999999999999999963
Q ss_pred CcceeecCCCCCCcCCccccCHhhHHHHhcccCCCC---CcEEEEecChhh-----HHhhhhCCCCcccccC------hh
Q 002521 613 AKETTYDALNNTPCLLPSWISQASARQRRGRAGRVQ---PGQCYHLYPRCV-----YEAFAEYQLPELLRTP------LN 678 (913)
Q Consensus 613 ~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~~---~G~c~~L~t~~~-----~~~l~~~~~pEi~r~~------L~ 678 (913)
...||+..+ ..++|..+|.||+|||||.+ .|.|+.+..... |+.+.. ..|+-..+. |.
T Consensus 355 --~~~yd~~~g-----~~~~s~~~y~Qm~GRAGR~g~d~~G~~ii~~~~~~~~~~~~~~~l~-~~~~~i~S~l~~~~~l~ 426 (737)
T PRK02362 355 --YRRYDGGAG-----MQPIPVLEYHQMAGRAGRPGLDPYGEAVLLAKSYDELDELFERYIW-ADPEDVRSKLATEPALR 426 (737)
T ss_pred --ceeecCCCC-----ceeCCHHHHHHHhhcCCCCCCCCCceEEEEecCchhHHHHHHHHHh-CCCCceeecCCChhhHH
Confidence 234665432 24779999999999999983 499999986531 233322 123322222 34
Q ss_pred hHHHHHhhcCC----CCHHHHHHh-ccCCC------chHHHHHHHHHHHHcCCCCCCC---CcccccccccccCCChHHH
Q 002521 679 SLCLQIKSLQV----GSIGEFLSA-ALQPP------EPLAVQNAVDFLKRIGALDEKE---NLTNLGKFLSMLPVDPKLG 744 (913)
Q Consensus 679 ~~~L~lk~l~~----~~~~~fl~~-~l~pP------~~~~i~~al~~L~~~gald~~~---~lT~lG~~ls~lpl~p~~~ 744 (913)
..++...+.+. .++.+|+.. |+..+ -.+.++.+++.|.+.|+|+.++ .+|++|++++.++++|..+
T Consensus 427 ~~lla~I~~~~~~~~~d~~~~l~~Tf~~~~~~~~~~l~~~v~~~l~~L~~~~~i~~~~~~~~~t~lG~~~s~~~l~~~t~ 506 (737)
T PRK02362 427 THVLSTIASGFARTRDGLLEFLEATFYATQTDDTGRLERVVDDVLDFLERNGMIEEDGETLEATELGHLVSRLYIDPLSA 506 (737)
T ss_pred HHHHHHHHhCccCCHHHHHHHHHhChHHhhccchHHHHHHHHHHHHHHHHCCCeeecCCeEeEChHHHHHHHhcCCHHHH
Confidence 44444444442 244455432 12222 2345899999999999998765 4899999999999999999
Q ss_pred HHHHHhhhcc---ChHHHHHHHh
Q 002521 745 KMLVMGAIFR---CFDPVLTIVS 764 (913)
Q Consensus 745 k~ll~~~~~~---cl~~~l~i~a 764 (913)
+.+..+..-. ....+|.++|
T Consensus 507 ~~~~~~l~~~~~~~~~~~l~~i~ 529 (737)
T PRK02362 507 AEIIDGLEAAKKPTDLGLLHLVC 529 (737)
T ss_pred HHHHHHhhhcccCchHHHHHHhh
Confidence 9988765432 2234555544
No 16
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.8e-42 Score=360.63 Aligned_cols=326 Identities=20% Similarity=0.220 Sum_probs=239.2
Q ss_pred hhhHHhhhcCCCcHHHHHHHHHHHHcCCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHH
Q 002521 239 GNKMLDFRKSLPSFKEKERLLQAIARNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERV 318 (913)
Q Consensus 239 ~~~l~~~r~~lP~~~~q~~il~~i~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv 318 (913)
++.+.+.....|... |.+.++.+.+|++||..|+||||||.++.+||++.++...+...+.|+. |||+||.|+++.+
T Consensus 73 ~~ac~~l~~~~PT~I-Q~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~~~~~lVLt--PtRELA~QI~e~f 149 (476)
T KOG0330|consen 73 LEACQELGWKKPTKI-QSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEPKLFFALVLT--PTRELAQQIAEQF 149 (476)
T ss_pred HHHHHHhCcCCCchh-hhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCCCCceEEEec--CcHHHHHHHHHHH
Confidence 444555556667644 5667777889999999999999999999999999999876665555555 9999999999999
Q ss_pred HHHhCCCcccEeeeEEecc------ccCCCCceEEEEecHHHHHHHhcCC--CCCCceEEEeccccccCcchHHHHHHHH
Q 002521 319 SAERGEPLGETVGYKVRLE------GMKGKNTHLLFCTSGILLRRLLSDH--NLNGVTHVFVDEIHERGMNEDFLLIVLK 390 (913)
Q Consensus 319 ~~~~~~~~g~~vGy~v~~e------~~~~~~~~Ivv~T~g~Ll~~l~~~~--~L~~~s~IIIDEaHer~~~~d~ll~llk 390 (913)
.. +|..+|..+..-+... ....+.++|+|+|||.|.+++.+.. .+..++++|+|||| |-++.||...+-+
T Consensus 150 e~-Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEAD-rlLd~dF~~~ld~ 227 (476)
T KOG0330|consen 150 EA-LGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDEAD-RLLDMDFEEELDY 227 (476)
T ss_pred HH-hccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhchHH-hhhhhhhHHHHHH
Confidence 66 3333333322222221 2234678999999999999998544 88999999999999 6678787655433
Q ss_pred HhCccCccceEEEeccccCHH--HHH-hhhCCCCeeccCCccccceeeehhhHHhhhcccccccccccchhhhhHHHHhh
Q 002521 391 DLLPRRRDLRLILMSATLNAE--LFS-NYFGGAPTIHIPGFTYPVQAHFLEDVLEMTGYKLTSLNQVDDYGQEKLWKTQR 467 (913)
Q Consensus 391 ~ll~~~~~~kiIlmSATl~~~--~~~-~yf~~~~~i~i~g~~~pv~~~yl~di~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (913)
.+-...++.|.+++|||++.+ .+. .-+.++..+.++...
T Consensus 228 ILk~ip~erqt~LfsATMt~kv~kL~rasl~~p~~v~~s~ky-------------------------------------- 269 (476)
T KOG0330|consen 228 ILKVIPRERQTFLFSATMTKKVRKLQRASLDNPVKVAVSSKY-------------------------------------- 269 (476)
T ss_pred HHHhcCccceEEEEEeecchhhHHHHhhccCCCeEEeccchh--------------------------------------
Confidence 333344667999999999643 222 111121112221110
Q ss_pred hhchhhhhhhHHHHHHHHHhhccccccchhhhhhhccccccccchhhHHHHHHHHhhhcCCCcEEEEcCChHHHHHHHHH
Q 002521 468 QLLPRKRKNQITALVEDALHKSNFENYSSRARDSLASWTADCIGFNLIEAVLCHICRKECPGAVLVFMTGWEDISCLRDQ 547 (913)
Q Consensus 468 ~~~~~~~~~~i~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~li~~ll~~i~~~~~~g~iLVF~~~~~~i~~l~~~ 547 (913)
+..+.+.+. +-.+....+...+.+|++...++++||||++....+.++-.
T Consensus 270 ---------~tv~~lkQ~---------------------ylfv~~k~K~~yLV~ll~e~~g~s~iVF~~t~~tt~~la~~ 319 (476)
T KOG0330|consen 270 ---------QTVDHLKQT---------------------YLFVPGKDKDTYLVYLLNELAGNSVIVFCNTCNTTRFLALL 319 (476)
T ss_pred ---------cchHHhhhh---------------------eEeccccccchhHHHHHHhhcCCcEEEEEeccchHHHHHHH
Confidence 000000000 01111222233466777777788999999999999999999
Q ss_pred HHcCCCCCCCCCeEEEEecCCCChHHHHHHhccCCCCccEEEEecchhhhcCCCCCeEEEEeCCCCcceeecCCCCCCcC
Q 002521 548 LKSHPLLGDPNRVLLLTCHGSMPTSEQKFIFEKAPPNIRKIVLATNMAEASITINDIVFVVDCGKAKETTYDALNNTPCL 627 (913)
Q Consensus 548 L~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~g~~kVLVATniae~GIdIp~v~~VId~g~~k~~~yd~~~~~~~l 627 (913)
|+.. ++...++||.|++..|...++.|++|.+.||||||++++|+|||.|++|||+++|.
T Consensus 320 L~~l-------g~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd~VVNyDiP~------------- 379 (476)
T KOG0330|consen 320 LRNL-------GFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHVDVVVNYDIPT------------- 379 (476)
T ss_pred HHhc-------CcceecccchhhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCceEEEecCCCC-------------
Confidence 9987 89999999999999999999999999999999999999999999999999966665
Q ss_pred CccccCHhhHHHHhcccCCC-CCcEEEEecChhhHH
Q 002521 628 LPSWISQASARQRRGRAGRV-QPGQCYHLYPRCVYE 662 (913)
Q Consensus 628 ~~~~iSka~~~QR~GRAGR~-~~G~c~~L~t~~~~~ 662 (913)
+-.+|+||+||+||. ++|+++.|.+..+.+
T Consensus 380 -----~skDYIHRvGRtaRaGrsG~~ItlVtqyDve 410 (476)
T KOG0330|consen 380 -----HSKDYIHRVGRTARAGRSGKAITLVTQYDVE 410 (476)
T ss_pred -----cHHHHHHHcccccccCCCcceEEEEehhhhH
Confidence 334888999999999 899999999984433
No 17
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.8e-39 Score=365.39 Aligned_cols=326 Identities=19% Similarity=0.251 Sum_probs=230.7
Q ss_pred hcCCCcHHHHHHHHHHHHcCCeEEEEcCCCchHHhHHHHHHHHHHHHh----CCCCceEEEEcchhHHHHHHHHHHHHHH
Q 002521 246 RKSLPSFKEKERLLQAIARNQVIVISGETGCGKTTQLPQYILESEIES----GRGAFCNIICTQPRRISAMAVSERVSAE 321 (913)
Q Consensus 246 r~~lP~~~~q~~il~~i~~~~~vII~apTGSGKTt~~~~~ile~~~~~----~~~~~~~Ilv~qPrr~La~qva~rv~~~ 321 (913)
...-|. +.|.+.|+.+..++++|..|.||||||++|.++++..+... .++....++|+.|||+||.|+.+.+.+.
T Consensus 110 g~~~Pt-pIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~PTRELA~QV~~~~~~~ 188 (519)
T KOG0331|consen 110 GFEKPT-PIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLAPTRELAVQVQAEAREF 188 (519)
T ss_pred CCCCCc-hhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEEcCcHHHHHHHHHHHHHH
Confidence 334443 44788899999999999999999999999999999988751 1233345666669999999998877554
Q ss_pred hCCCcc--cEeeeE-----EeccccCCCCceEEEEecHHHHHHHhcCC-CCCCceEEEeccccccCcchHHHHHHHHHhC
Q 002521 322 RGEPLG--ETVGYK-----VRLEGMKGKNTHLLFCTSGILLRRLLSDH-NLNGVTHVFVDEIHERGMNEDFLLIVLKDLL 393 (913)
Q Consensus 322 ~~~~~g--~~vGy~-----v~~e~~~~~~~~Ivv~T~g~Ll~~l~~~~-~L~~~s~IIIDEaHer~~~~d~ll~llk~ll 393 (913)
+..++ ..+-|. .+. .......+|+|+|||+|++++.... .|++++|+|+||||.+ ++.+|-..+-+.+-
T Consensus 189 -~~~~~~~~~cvyGG~~~~~Q~-~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEADrM-ldmGFe~qI~~Il~ 265 (519)
T KOG0331|consen 189 -GKSLRLRSTCVYGGAPKGPQL-RDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEADRM-LDMGFEPQIRKILS 265 (519)
T ss_pred -cCCCCccEEEEeCCCCccHHH-HHHhcCCcEEEeCChHHHHHHHcCCccccceeEEEeccHHhh-hccccHHHHHHHHH
Confidence 33333 122121 111 1223568999999999999998776 8999999999999943 44444444333333
Q ss_pred cc-CccceEEEeccccCHH--HH-HhhhCCCCeeccCCccccceeeehhhHHhhhcccccccccccchhhhhHHHHhhhh
Q 002521 394 PR-RRDLRLILMSATLNAE--LF-SNYFGGAPTIHIPGFTYPVQAHFLEDVLEMTGYKLTSLNQVDDYGQEKLWKTQRQL 469 (913)
Q Consensus 394 ~~-~~~~kiIlmSATl~~~--~~-~~yf~~~~~i~i~g~~~pv~~~yl~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (913)
.. +++.|+++.|||++.+ .| ..|++++..+.+-+.. +.
T Consensus 266 ~i~~~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~---------~~----------------------------- 307 (519)
T KOG0331|consen 266 QIPRPDRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKK---------EL----------------------------- 307 (519)
T ss_pred hcCCCcccEEEEeeeccHHHHHHHHHHhcCceEEEecchh---------hh-----------------------------
Confidence 33 4445899999999765 33 3455532222222110 00
Q ss_pred chhhhhhhHHHHHHHHHhhccccccchhhhhhhccccccccchhhHHHHHHHHhhhcCCCcEEEEcCChHHHHHHHHHHH
Q 002521 470 LPRKRKNQITALVEDALHKSNFENYSSRARDSLASWTADCIGFNLIEAVLCHICRKECPGAVLVFMTGWEDISCLRDQLK 549 (913)
Q Consensus 470 ~~~~~~~~i~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~li~~ll~~i~~~~~~g~iLVF~~~~~~i~~l~~~L~ 549 (913)
.......++...++ ..-....+..+|..+. ...++++||||.++..|+.+...|.
T Consensus 308 ~a~~~i~qive~~~------------------------~~~K~~~l~~lL~~~~-~~~~~KvIIFc~tkr~~~~l~~~l~ 362 (519)
T KOG0331|consen 308 KANHNIRQIVEVCD------------------------ETAKLRKLGKLLEDIS-SDSEGKVIIFCETKRTCDELARNLR 362 (519)
T ss_pred hhhcchhhhhhhcC------------------------HHHHHHHHHHHHHHHh-ccCCCcEEEEecchhhHHHHHHHHH
Confidence 00000000000000 0111123344455554 4567899999999999999999999
Q ss_pred cCCCCCCCCCeEEEEecCCCChHHHHHHhccCCCCccEEEEecchhhhcCCCCCeEEEEeCCCCcceeecCCCCCCcCCc
Q 002521 550 SHPLLGDPNRVLLLTCHGSMPTSEQKFIFEKAPPNIRKIVLATNMAEASITINDIVFVVDCGKAKETTYDALNNTPCLLP 629 (913)
Q Consensus 550 ~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~g~~kVLVATniae~GIdIp~v~~VId~g~~k~~~yd~~~~~~~l~~ 629 (913)
.. ++.+..+||+.++.+|..+++.|++|+..||||||+|++|||||+|++||++++|.
T Consensus 363 ~~-------~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~dV~lVInydfP~--------------- 420 (519)
T KOG0331|consen 363 RK-------GWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLDVPDVDLVINYDFPN--------------- 420 (519)
T ss_pred hc-------CcceeeecccccHHHHHHHHHhcccCCcceEEEcccccccCCCccccEEEeCCCCC---------------
Confidence 85 57899999999999999999999999999999999999999999999999966555
Q ss_pred cccCHhhHHHHhcccCCC-CCcEEEEecChhhHHh
Q 002521 630 SWISQASARQRRGRAGRV-QPGQCYHLYPRCVYEA 663 (913)
Q Consensus 630 ~~iSka~~~QR~GRAGR~-~~G~c~~L~t~~~~~~ 663 (913)
+.++|+||+||+||. +.|.+|.+|+...+..
T Consensus 421 ---~vEdYVHRiGRTGRa~~~G~A~tfft~~~~~~ 452 (519)
T KOG0331|consen 421 ---NVEDYVHRIGRTGRAGKKGTAITFFTSDNAKL 452 (519)
T ss_pred ---CHHHHHhhcCccccCCCCceEEEEEeHHHHHH
Confidence 445888999999997 8899999999887653
No 18
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=1.3e-38 Score=371.76 Aligned_cols=312 Identities=17% Similarity=0.217 Sum_probs=223.1
Q ss_pred cHHHHHHHHHHHHcCCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHHHHHhCCCcccEe
Q 002521 251 SFKEKERLLQAIARNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVSAERGEPLGETV 330 (913)
Q Consensus 251 ~~~~q~~il~~i~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv~~~~~~~~g~~v 330 (913)
.++.|+++++.+..+++++++||||||||+++.+++++.+.....+ +.+++++|||+||.|+++.+........+..+
T Consensus 27 ~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~~~--~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~v 104 (460)
T PRK11776 27 MTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKRFR--VQALVLCPTRELADQVAKEIRRLARFIPNIKV 104 (460)
T ss_pred CCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhccCC--ceEEEEeCCHHHHHHHHHHHHHHHhhCCCcEE
Confidence 3467899999999999999999999999999999999887433323 34555559999999999988764321111122
Q ss_pred eeEE-------eccccCCCCceEEEEecHHHHHHHhcCC-CCCCceEEEeccccccCcchHHHHHHHHHhCccCccceEE
Q 002521 331 GYKV-------RLEGMKGKNTHLLFCTSGILLRRLLSDH-NLNGVTHVFVDEIHERGMNEDFLLIVLKDLLPRRRDLRLI 402 (913)
Q Consensus 331 Gy~v-------~~e~~~~~~~~Ivv~T~g~Ll~~l~~~~-~L~~~s~IIIDEaHer~~~~d~ll~llk~ll~~~~~~kiI 402 (913)
..-. ..+.. ..+++|+|+|||+|.+++.... .+.++++|||||||++ ....+...+...+....+..|++
T Consensus 105 ~~~~Gg~~~~~~~~~l-~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad~~-l~~g~~~~l~~i~~~~~~~~q~l 182 (460)
T PRK11776 105 LTLCGGVPMGPQIDSL-EHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEADRM-LDMGFQDAIDAIIRQAPARRQTL 182 (460)
T ss_pred EEEECCCChHHHHHHh-cCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECHHHH-hCcCcHHHHHHHHHhCCcccEEE
Confidence 1111 11112 2568999999999999987654 7899999999999953 22222222211122223456899
Q ss_pred EeccccCHH--HHHhhh-CCCCeeccCCcc--ccceeeehhhHHhhhcccccccccccchhhhhHHHHhhhhchhhhhhh
Q 002521 403 LMSATLNAE--LFSNYF-GGAPTIHIPGFT--YPVQAHFLEDVLEMTGYKLTSLNQVDDYGQEKLWKTQRQLLPRKRKNQ 477 (913)
Q Consensus 403 lmSATl~~~--~~~~yf-~~~~~i~i~g~~--~pv~~~yl~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (913)
++|||++.. .+...| ..+..+.+.... ..++.+|..
T Consensus 183 l~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~i~~~~~~--------------------------------------- 223 (460)
T PRK11776 183 LFSATYPEGIAAISQRFQRDPVEVKVESTHDLPAIEQRFYE--------------------------------------- 223 (460)
T ss_pred EEEecCcHHHHHHHHHhcCCCEEEEECcCCCCCCeeEEEEE---------------------------------------
Confidence 999999653 344433 333333332111 011111110
Q ss_pred HHHHHHHHHhhccccccchhhhhhhccccccccchhhHHHHHHHHhhhcCCCcEEEEcCChHHHHHHHHHHHcCCCCCCC
Q 002521 478 ITALVEDALHKSNFENYSSRARDSLASWTADCIGFNLIEAVLCHICRKECPGAVLVFMTGWEDISCLRDQLKSHPLLGDP 557 (913)
Q Consensus 478 i~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~li~~ll~~i~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~~~~ 557 (913)
.........+..++....++++||||++++.++.+++.|...
T Consensus 224 --------------------------------~~~~~k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~------ 265 (460)
T PRK11776 224 --------------------------------VSPDERLPALQRLLLHHQPESCVVFCNTKKECQEVADALNAQ------ 265 (460)
T ss_pred --------------------------------eCcHHHHHHHHHHHHhcCCCceEEEECCHHHHHHHHHHHHhC------
Confidence 000011223444555556788999999999999999999886
Q ss_pred CCeEEEEecCCCChHHHHHHhccCCCCccEEEEecchhhhcCCCCCeEEEEeCCCCcceeecCCCCCCcCCccccCHhhH
Q 002521 558 NRVLLLTCHGSMPTSEQKFIFEKAPPNIRKIVLATNMAEASITINDIVFVVDCGKAKETTYDALNNTPCLLPSWISQASA 637 (913)
Q Consensus 558 ~~~~v~~lHs~l~~~er~~v~~~f~~g~~kVLVATniae~GIdIp~v~~VId~g~~k~~~yd~~~~~~~l~~~~iSka~~ 637 (913)
++.+..+||+|++.+|+.+++.|++|..+|||||+++++|||||++++||+++.|. +..+|
T Consensus 266 -~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~VI~~d~p~------------------~~~~y 326 (460)
T PRK11776 266 -GFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEAVINYELAR------------------DPEVH 326 (460)
T ss_pred -CCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCeEEEecCCC------------------CHhHh
Confidence 77899999999999999999999999999999999999999999999999977765 55688
Q ss_pred HHHhcccCCC-CCcEEEEecChhhHH
Q 002521 638 RQRRGRAGRV-QPGQCYHLYPRCVYE 662 (913)
Q Consensus 638 ~QR~GRAGR~-~~G~c~~L~t~~~~~ 662 (913)
+||+|||||. +.|.||.|++..+..
T Consensus 327 iqR~GRtGR~g~~G~ai~l~~~~e~~ 352 (460)
T PRK11776 327 VHRIGRTGRAGSKGLALSLVAPEEMQ 352 (460)
T ss_pred hhhcccccCCCCcceEEEEEchhHHH
Confidence 8999999999 689999999987543
No 19
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=3.1e-38 Score=364.63 Aligned_cols=318 Identities=16% Similarity=0.165 Sum_probs=222.4
Q ss_pred hhcCCCcHHHHHHHHHHHHcCCeEEEEcCCCchHHhHHHHHHHHHHHHhCC-----CCceEEEEcchhHHHHHHHHHHHH
Q 002521 245 FRKSLPSFKEKERLLQAIARNQVIVISGETGCGKTTQLPQYILESEIESGR-----GAFCNIICTQPRRISAMAVSERVS 319 (913)
Q Consensus 245 ~r~~lP~~~~q~~il~~i~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~-----~~~~~Ilv~qPrr~La~qva~rv~ 319 (913)
....-| ++.|.++++.+..+++++++||||||||+++.+++++.+..... ...+.+++++|||+||.|+++.+.
T Consensus 26 ~g~~~p-t~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~lil~PtreLa~Qi~~~~~ 104 (423)
T PRK04837 26 KGFHNC-TPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRALIMAPTRELAVQIHADAE 104 (423)
T ss_pred CCCCCC-CHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceEEEECCcHHHHHHHHHHHH
Confidence 334434 35688888999999999999999999999999999988764321 123567777799999999988775
Q ss_pred HHhCCCcccEeeeEEeccc------cCCCCceEEEEecHHHHHHHhcCC-CCCCceEEEecccccc---CcchHHHHHHH
Q 002521 320 AERGEPLGETVGYKVRLEG------MKGKNTHLLFCTSGILLRRLLSDH-NLNGVTHVFVDEIHER---GMNEDFLLIVL 389 (913)
Q Consensus 320 ~~~~~~~g~~vGy~v~~e~------~~~~~~~Ivv~T~g~Ll~~l~~~~-~L~~~s~IIIDEaHer---~~~~d~ll~ll 389 (913)
.... ..+..++....... ....+++|+|+||++|++++.... .+.++++|||||||+. ++..++ ..++
T Consensus 105 ~l~~-~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViDEad~l~~~~f~~~i-~~i~ 182 (423)
T PRK04837 105 PLAQ-ATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMFDLGFIKDI-RWLF 182 (423)
T ss_pred HHhc-cCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccccEEEEecHHHHhhcccHHHH-HHHH
Confidence 5332 22333332222111 122457999999999999987654 7899999999999954 222222 1222
Q ss_pred HHhCccCccceEEEeccccCHHH---HHhhhCCCCeeccCCcccc---ceeeehhhHHhhhcccccccccccchhhhhHH
Q 002521 390 KDLLPRRRDLRLILMSATLNAEL---FSNYFGGAPTIHIPGFTYP---VQAHFLEDVLEMTGYKLTSLNQVDDYGQEKLW 463 (913)
Q Consensus 390 k~ll~~~~~~kiIlmSATl~~~~---~~~yf~~~~~i~i~g~~~p---v~~~yl~di~~~~~~~~~~~~~~~~~~~~~~~ 463 (913)
+. ++.....+.+++|||++... ...++.++..+.+...... +...+.
T Consensus 183 ~~-~~~~~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~~~~~~i~~~~~-------------------------- 235 (423)
T PRK04837 183 RR-MPPANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQKTGHRIKEELF-------------------------- 235 (423)
T ss_pred Hh-CCCccceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCCcCCCceeEEEE--------------------------
Confidence 22 22223446799999997542 2234444333332211100 000000
Q ss_pred HHhhhhchhhhhhhHHHHHHHHHhhccccccchhhhhhhccccccccchhhHHHHHHHHhhhcCCCcEEEEcCChHHHHH
Q 002521 464 KTQRQLLPRKRKNQITALVEDALHKSNFENYSSRARDSLASWTADCIGFNLIEAVLCHICRKECPGAVLVFMTGWEDISC 543 (913)
Q Consensus 464 ~~~~~~~~~~~~~~i~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~li~~ll~~i~~~~~~g~iLVF~~~~~~i~~ 543 (913)
......+...+..+......+++||||+++..++.
T Consensus 236 ---------------------------------------------~~~~~~k~~~l~~ll~~~~~~~~lVF~~t~~~~~~ 270 (423)
T PRK04837 236 ---------------------------------------------YPSNEEKMRLLQTLIEEEWPDRAIIFANTKHRCEE 270 (423)
T ss_pred ---------------------------------------------eCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHH
Confidence 00001111223334444456789999999999999
Q ss_pred HHHHHHcCCCCCCCCCeEEEEecCCCChHHHHHHhccCCCCccEEEEecchhhhcCCCCCeEEEEeCCCCcceeecCCCC
Q 002521 544 LRDQLKSHPLLGDPNRVLLLTCHGSMPTSEQKFIFEKAPPNIRKIVLATNMAEASITINDIVFVVDCGKAKETTYDALNN 623 (913)
Q Consensus 544 l~~~L~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~g~~kVLVATniae~GIdIp~v~~VId~g~~k~~~yd~~~~ 623 (913)
+++.|... ++.+..+||+|++++|..+++.|++|+++|||||+++++|||||+|++||++++|.
T Consensus 271 l~~~L~~~-------g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDip~v~~VI~~d~P~--------- 334 (423)
T PRK04837 271 IWGHLAAD-------GHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPD--------- 334 (423)
T ss_pred HHHHHHhC-------CCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCCccccCEEEEeCCCC---------
Confidence 99999875 77899999999999999999999999999999999999999999999999966554
Q ss_pred CCcCCccccCHhhHHHHhcccCCC-CCcEEEEecChhhHH
Q 002521 624 TPCLLPSWISQASARQRRGRAGRV-QPGQCYHLYPRCVYE 662 (913)
Q Consensus 624 ~~~l~~~~iSka~~~QR~GRAGR~-~~G~c~~L~t~~~~~ 662 (913)
|..+|.||+|||||. +.|.|+.++++++..
T Consensus 335 ---------s~~~yiqR~GR~gR~G~~G~ai~~~~~~~~~ 365 (423)
T PRK04837 335 ---------DCEDYVHRIGRTGRAGASGHSISLACEEYAL 365 (423)
T ss_pred ---------chhheEeccccccCCCCCeeEEEEeCHHHHH
Confidence 555777999999999 789999999987543
No 20
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=7.6e-37 Score=373.88 Aligned_cols=445 Identities=18% Similarity=0.163 Sum_probs=280.5
Q ss_pred hhhHHhhhcCCCcHHHHHHHHHH-HHcCCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHH
Q 002521 239 GNKMLDFRKSLPSFKEKERLLQA-IARNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSER 317 (913)
Q Consensus 239 ~~~l~~~r~~lP~~~~q~~il~~-i~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~r 317 (913)
..+.++.+.---.++.|.++++. +..++++++++|||||||+++.+++++.+... + .++++++|+++||.|++++
T Consensus 12 ~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~--~--~~~l~l~P~~aLa~q~~~~ 87 (720)
T PRK00254 12 IKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLRE--G--GKAVYLVPLKALAEEKYRE 87 (720)
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHhc--C--CeEEEEeChHHHHHHHHHH
Confidence 33333333333456678888875 88999999999999999999999999877542 2 3566677999999999999
Q ss_pred HHHHhCCCcccEeeeEEe-c--cccCCCCceEEEEecHHHHHHHhcCC-CCCCceEEEeccccccCc--chHHHHHHHHH
Q 002521 318 VSAERGEPLGETVGYKVR-L--EGMKGKNTHLLFCTSGILLRRLLSDH-NLNGVTHVFVDEIHERGM--NEDFLLIVLKD 391 (913)
Q Consensus 318 v~~~~~~~~g~~vGy~v~-~--e~~~~~~~~Ivv~T~g~Ll~~l~~~~-~L~~~s~IIIDEaHer~~--~~d~ll~llk~ 391 (913)
+.... .+|..++.... . ......+++|+|+||+.+..++.... +++++++|||||+|..+- ....+..++..
T Consensus 88 ~~~~~--~~g~~v~~~~Gd~~~~~~~~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H~l~~~~rg~~le~il~~ 165 (720)
T PRK00254 88 FKDWE--KLGLRVAMTTGDYDSTDEWLGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIHLIGSYDRGATLEMILTH 165 (720)
T ss_pred HHHHh--hcCCEEEEEeCCCCCchhhhccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcCccCCccchHHHHHHHHh
Confidence 87531 23333332211 1 11112457999999999988776543 789999999999995421 11222223333
Q ss_pred hCccCccceEEEecccc-CHHHHHhhhCCCCeeccCCccccceeeehhhHHhhhcccccccccccchhhhhHHHHhhhhc
Q 002521 392 LLPRRRDLRLILMSATL-NAELFSNYFGGAPTIHIPGFTYPVQAHFLEDVLEMTGYKLTSLNQVDDYGQEKLWKTQRQLL 470 (913)
Q Consensus 392 ll~~~~~~kiIlmSATl-~~~~~~~yf~~~~~i~i~g~~~pv~~~yl~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (913)
+ ..+.|+|+||||+ +++.+..|++.. .+....+..|+....... ++... .+
T Consensus 166 l---~~~~qiI~lSATl~n~~~la~wl~~~-~~~~~~rpv~l~~~~~~~-----~~~~~-----~~-------------- 217 (720)
T PRK00254 166 M---LGRAQILGLSATVGNAEELAEWLNAE-LVVSDWRPVKLRKGVFYQ-----GFLFW-----ED-------------- 217 (720)
T ss_pred c---CcCCcEEEEEccCCCHHHHHHHhCCc-cccCCCCCCcceeeEecC-----Ceeec-----cC--------------
Confidence 2 2457999999999 788999999753 232333333332111000 00000 00
Q ss_pred hhhhhhhHHHHHHHHHhhccccccchhhhhhhccccccccchhhHHHHHHHHhhhcCCCcEEEEcCChHHHHHHHHHHHc
Q 002521 471 PRKRKNQITALVEDALHKSNFENYSSRARDSLASWTADCIGFNLIEAVLCHICRKECPGAVLVFMTGWEDISCLRDQLKS 550 (913)
Q Consensus 471 ~~~~~~~i~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~li~~ll~~i~~~~~~g~iLVF~~~~~~i~~l~~~L~~ 550 (913)
... .... .....++..... .++++||||+++..++.++..|..
T Consensus 218 -~~~-~~~~---------------------------------~~~~~~~~~~i~--~~~~vLVF~~sr~~~~~~a~~l~~ 260 (720)
T PRK00254 218 -GKI-ERFP---------------------------------NSWESLVYDAVK--KGKGALVFVNTRRSAEKEALELAK 260 (720)
T ss_pred -cch-hcch---------------------------------HHHHHHHHHHHH--hCCCEEEEEcChHHHHHHHHHHHH
Confidence 000 0000 000011112221 357899999999999888766643
Q ss_pred CC--CCC------------------------CCCCeEEEEecCCCChHHHHHHhccCCCCccEEEEecchhhhcCCCCCe
Q 002521 551 HP--LLG------------------------DPNRVLLLTCHGSMPTSEQKFIFEKAPPNIRKIVLATNMAEASITINDI 604 (913)
Q Consensus 551 ~~--~~~------------------------~~~~~~v~~lHs~l~~~er~~v~~~f~~g~~kVLVATniae~GIdIp~v 604 (913)
.. .+. ......|.+|||+|++++|..+++.|++|.++|||||+++++|||+|++
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~~~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~ 340 (720)
T PRK00254 261 KIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLGRTERVLIEDAFREGLIKVITATPTLSAGINLPAF 340 (720)
T ss_pred HHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCCHHHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCce
Confidence 10 000 0012358999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCcceeecCCCCCCcCCccccCHhhHHHHhcccCCC---CCcEEEEecChhh----HHhhhhCCCCccccc--
Q 002521 605 VFVVDCGKAKETTYDALNNTPCLLPSWISQASARQRRGRAGRV---QPGQCYHLYPRCV----YEAFAEYQLPELLRT-- 675 (913)
Q Consensus 605 ~~VId~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~---~~G~c~~L~t~~~----~~~l~~~~~pEi~r~-- 675 (913)
++||... ..|+. +...+++..+|.||+|||||. ..|.|+.+.+... ++.+.. ..||-+..
T Consensus 341 ~vVI~~~----~~~~~------~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~~~~~~~~~~~~~~~-~~pe~l~s~l 409 (720)
T PRK00254 341 RVIIRDT----KRYSN------FGWEDIPVLEIQQMMGRAGRPKYDEVGEAIIVATTEEPSKLMERYIF-GKPEKLFSML 409 (720)
T ss_pred EEEECCc----eEcCC------CCceeCCHHHHHHhhhccCCCCcCCCceEEEEecCcchHHHHHHHHh-CCchhhhccC
Confidence 9999632 22431 112345678999999999997 4699999876433 333321 12222211
Q ss_pred ----ChhhHHHHHhhcC-CC---CHHHHHHhcc---CCCc----hHHHHHHHHHHHHcCCCCCC----CCcccccccccc
Q 002521 676 ----PLNSLCLQIKSLQ-VG---SIGEFLSAAL---QPPE----PLAVQNAVDFLKRIGALDEK----ENLTNLGKFLSM 736 (913)
Q Consensus 676 ----~L~~~~L~lk~l~-~~---~~~~fl~~~l---~pP~----~~~i~~al~~L~~~gald~~----~~lT~lG~~ls~ 736 (913)
.|...++.....+ +. ++.+||...+ ..|+ ...++.+++.|.+.|+|+.+ -.+|++|++++.
T Consensus 410 ~~es~l~~~ll~~i~~~~~~~~~~~~~~l~~Tf~~~~~~~~~~~~~~v~~~l~~L~~~~~i~~~~~~~~~~t~lG~~~s~ 489 (720)
T PRK00254 410 SNESAFRSQVLALITNFGVSNFKELVNFLERTFYAHQRKDLYSLEEKAKEIVYFLLENEFIDIDLEDRFIPLPLGIRTSQ 489 (720)
T ss_pred CchHHHHHHHHHHHHhCCCCCHHHHHHHHHhCHHHHhhcChHhHHHHHHHHHHHHHHCCCeEEcCCCCEeeChHHHHHHH
Confidence 1222333333322 33 3334443322 2344 24578889999999999643 257999999999
Q ss_pred cCCChHHHHHHHHhhh----ccChHHHHHHHhh
Q 002521 737 LPVDPKLGKMLVMGAI----FRCFDPVLTIVSG 765 (913)
Q Consensus 737 lpl~p~~~k~ll~~~~----~~cl~~~l~i~a~ 765 (913)
++++|..++++..+.. ......+|-+++.
T Consensus 490 ~~i~~~t~~~~~~~l~~~~~~~~~~~~l~~~~~ 522 (720)
T PRK00254 490 LYIDPLTAKKFKDAFPKIEKNPNPLGIFQLIAS 522 (720)
T ss_pred HhCCHHHHHHHHHHHHhhccCCCHHHHHHHhhC
Confidence 9999999999876643 1244455655543
No 21
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=6.3e-38 Score=363.61 Aligned_cols=321 Identities=18% Similarity=0.236 Sum_probs=227.2
Q ss_pred CcHHHHHHHHHHHHcCCeEEEEcCCCchHHhHHHHHHHHHHHHhC--CCCceEEEEcchhHHHHHHHHHHHHHHhCCCcc
Q 002521 250 PSFKEKERLLQAIARNQVIVISGETGCGKTTQLPQYILESEIESG--RGAFCNIICTQPRRISAMAVSERVSAERGEPLG 327 (913)
Q Consensus 250 P~~~~q~~il~~i~~~~~vII~apTGSGKTt~~~~~ile~~~~~~--~~~~~~Ilv~qPrr~La~qva~rv~~~~~~~~g 327 (913)
..+++|.++++++.++++++++||||||||+++.+++++.+.... .+...++++++||++||.|+++.+..... ..+
T Consensus 23 ~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~Pt~eLa~Q~~~~~~~l~~-~~~ 101 (434)
T PRK11192 23 RPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTPTRELAMQVADQARELAK-HTH 101 (434)
T ss_pred CCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECCcHHHHHHHHHHHHHHHc-cCC
Confidence 345678889999999999999999999999999999998775422 22345788888999999999988765432 122
Q ss_pred cEeeeEEe------ccccCCCCceEEEEecHHHHHHHhcCC-CCCCceEEEeccccccCcchHHHHHHHHHhCccCccce
Q 002521 328 ETVGYKVR------LEGMKGKNTHLLFCTSGILLRRLLSDH-NLNGVTHVFVDEIHERGMNEDFLLIVLKDLLPRRRDLR 400 (913)
Q Consensus 328 ~~vGy~v~------~e~~~~~~~~Ivv~T~g~Ll~~l~~~~-~L~~~s~IIIDEaHer~~~~d~ll~llk~ll~~~~~~k 400 (913)
..++.... .......+++|+|+|||+|++.+.... .+.++++|||||||.. ....+...+...........|
T Consensus 102 ~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah~~-l~~~~~~~~~~i~~~~~~~~q 180 (434)
T PRK11192 102 LDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEADRM-LDMGFAQDIETIAAETRWRKQ 180 (434)
T ss_pred cEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHHHH-hCCCcHHHHHHHHHhCccccE
Confidence 22221111 111223567999999999999987665 6889999999999953 121121111111112234458
Q ss_pred EEEeccccCHH---HHHhhhCCCCe-eccCCccccceeeehhhHHhhhcccccccccccchhhhhHHHHhhhhchhhhhh
Q 002521 401 LILMSATLNAE---LFSNYFGGAPT-IHIPGFTYPVQAHFLEDVLEMTGYKLTSLNQVDDYGQEKLWKTQRQLLPRKRKN 476 (913)
Q Consensus 401 iIlmSATl~~~---~~~~yf~~~~~-i~i~g~~~pv~~~yl~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (913)
+++||||++.. .|..++...++ +.+......
T Consensus 181 ~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~--------------------------------------------- 215 (434)
T PRK11192 181 TLLFSATLEGDAVQDFAERLLNDPVEVEAEPSRRE--------------------------------------------- 215 (434)
T ss_pred EEEEEeecCHHHHHHHHHHHccCCEEEEecCCccc---------------------------------------------
Confidence 99999999754 33333332221 111100000
Q ss_pred hHHHHHHHHHhhccccccchhhhhhhccccccccchhhHHHHHHHHhhhcCCCcEEEEcCChHHHHHHHHHHHcCCCCCC
Q 002521 477 QITALVEDALHKSNFENYSSRARDSLASWTADCIGFNLIEAVLCHICRKECPGAVLVFMTGWEDISCLRDQLKSHPLLGD 556 (913)
Q Consensus 477 ~i~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~li~~ll~~i~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~~~ 556 (913)
...+.++.........+..++.++......+++||||+++++++.+++.|...
T Consensus 216 ----------------------~~~i~~~~~~~~~~~~k~~~l~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~----- 268 (434)
T PRK11192 216 ----------------------RKKIHQWYYRADDLEHKTALLCHLLKQPEVTRSIVFVRTRERVHELAGWLRKA----- 268 (434)
T ss_pred ----------------------ccCceEEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCChHHHHHHHHHHHhC-----
Confidence 00000111111111223345566666556789999999999999999999875
Q ss_pred CCCeEEEEecCCCChHHHHHHhccCCCCccEEEEecchhhhcCCCCCeEEEEeCCCCcceeecCCCCCCcCCccccCHhh
Q 002521 557 PNRVLLLTCHGSMPTSEQKFIFEKAPPNIRKIVLATNMAEASITINDIVFVVDCGKAKETTYDALNNTPCLLPSWISQAS 636 (913)
Q Consensus 557 ~~~~~v~~lHs~l~~~er~~v~~~f~~g~~kVLVATniae~GIdIp~v~~VId~g~~k~~~yd~~~~~~~l~~~~iSka~ 636 (913)
++.+..+||+|++.+|..+++.|++|.++|||||+++++|||||+|++||+++.|. |...
T Consensus 269 --~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~~VI~~d~p~------------------s~~~ 328 (434)
T PRK11192 269 --GINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVSHVINFDMPR------------------SADT 328 (434)
T ss_pred --CCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCCEEEEECCCC------------------CHHH
Confidence 67899999999999999999999999999999999999999999999999966654 6678
Q ss_pred HHHHhcccCCC-CCcEEEEecChhhHHhh
Q 002521 637 ARQRRGRAGRV-QPGQCYHLYPRCVYEAF 664 (913)
Q Consensus 637 ~~QR~GRAGR~-~~G~c~~L~t~~~~~~l 664 (913)
|+||+|||||. ..|.++.+++..++..+
T Consensus 329 yiqr~GR~gR~g~~g~ai~l~~~~d~~~~ 357 (434)
T PRK11192 329 YLHRIGRTGRAGRKGTAISLVEAHDHLLL 357 (434)
T ss_pred HhhcccccccCCCCceEEEEecHHHHHHH
Confidence 99999999998 78999999988776543
No 22
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=1.1e-37 Score=362.81 Aligned_cols=314 Identities=18% Similarity=0.202 Sum_probs=222.1
Q ss_pred HHHHHHHHHHHHcCCeEEEEcCCCchHHhHHHHHHHHHHHHhCC----CCceEEEEcchhHHHHHHHHHHHHHHhCCC--
Q 002521 252 FKEKERLLQAIARNQVIVISGETGCGKTTQLPQYILESEIESGR----GAFCNIICTQPRRISAMAVSERVSAERGEP-- 325 (913)
Q Consensus 252 ~~~q~~il~~i~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~----~~~~~Ilv~qPrr~La~qva~rv~~~~~~~-- 325 (913)
++.|.++++.+..+++++++||||||||+++.+++++.+..... ....++|+++|||+||.|+.+.+.......
T Consensus 25 t~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~~~~~~~~~~~ 104 (456)
T PRK10590 25 TPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNI 104 (456)
T ss_pred CHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEEeCcHHHHHHHHHHHHHHhccCCC
Confidence 46788889999999999999999999999999999988754321 122456777799999999999987754321
Q ss_pred -cccEee-eEEecc-ccCCCCceEEEEecHHHHHHHhcCC-CCCCceEEEeccccccCcchHHHHHHHHHhCccCccceE
Q 002521 326 -LGETVG-YKVRLE-GMKGKNTHLLFCTSGILLRRLLSDH-NLNGVTHVFVDEIHERGMNEDFLLIVLKDLLPRRRDLRL 401 (913)
Q Consensus 326 -~g~~vG-y~v~~e-~~~~~~~~Ivv~T~g~Ll~~l~~~~-~L~~~s~IIIDEaHer~~~~d~ll~llk~ll~~~~~~ki 401 (913)
....+| .....+ ......++|+|+||++|++.+.... .++++++|||||||.. ....+...+...+.......++
T Consensus 105 ~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah~l-l~~~~~~~i~~il~~l~~~~q~ 183 (456)
T PRK10590 105 RSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRM-LDMGFIHDIRRVLAKLPAKRQN 183 (456)
T ss_pred EEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeecHHHH-hccccHHHHHHHHHhCCccCeE
Confidence 111111 110000 1123467999999999999886655 7899999999999953 2222222221112222345689
Q ss_pred EEeccccCHH--HHH-hhhCCCCeeccCCcccc---ceeeehhhHHhhhcccccccccccchhhhhHHHHhhhhchhhhh
Q 002521 402 ILMSATLNAE--LFS-NYFGGAPTIHIPGFTYP---VQAHFLEDVLEMTGYKLTSLNQVDDYGQEKLWKTQRQLLPRKRK 475 (913)
Q Consensus 402 IlmSATl~~~--~~~-~yf~~~~~i~i~g~~~p---v~~~yl~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (913)
++||||++.+ .+. .++.++..+.+...... +..++.
T Consensus 184 l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~~~~~-------------------------------------- 225 (456)
T PRK10590 184 LLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQVTQHVH-------------------------------------- 225 (456)
T ss_pred EEEeCCCcHHHHHHHHHHcCCCeEEEEecccccccceeEEEE--------------------------------------
Confidence 9999999753 333 44444333332211100 000000
Q ss_pred hhHHHHHHHHHhhccccccchhhhhhhccccccccchhhHHHHHHHHhhhcCCCcEEEEcCChHHHHHHHHHHHcCCCCC
Q 002521 476 NQITALVEDALHKSNFENYSSRARDSLASWTADCIGFNLIEAVLCHICRKECPGAVLVFMTGWEDISCLRDQLKSHPLLG 555 (913)
Q Consensus 476 ~~i~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~li~~ll~~i~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~~ 555 (913)
..+......++..+.......++||||+++.+++.+++.|...
T Consensus 226 ---------------------------------~~~~~~k~~~l~~l~~~~~~~~~lVF~~t~~~~~~l~~~L~~~---- 268 (456)
T PRK10590 226 ---------------------------------FVDKKRKRELLSQMIGKGNWQQVLVFTRTKHGANHLAEQLNKD---- 268 (456)
T ss_pred ---------------------------------EcCHHHHHHHHHHHHHcCCCCcEEEEcCcHHHHHHHHHHHHHC----
Confidence 0000111223444444455678999999999999999999875
Q ss_pred CCCCeEEEEecCCCChHHHHHHhccCCCCccEEEEecchhhhcCCCCCeEEEEeCCCCcceeecCCCCCCcCCccccCHh
Q 002521 556 DPNRVLLLTCHGSMPTSEQKFIFEKAPPNIRKIVLATNMAEASITINDIVFVVDCGKAKETTYDALNNTPCLLPSWISQA 635 (913)
Q Consensus 556 ~~~~~~v~~lHs~l~~~er~~v~~~f~~g~~kVLVATniae~GIdIp~v~~VId~g~~k~~~yd~~~~~~~l~~~~iSka 635 (913)
++.+..+||+|++.+|..+++.|++|+++|||||+++++|||||+|++||+++.|. +..
T Consensus 269 ---g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~~~~P~------------------~~~ 327 (456)
T PRK10590 269 ---GIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPN------------------VPE 327 (456)
T ss_pred ---CCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEEEEeCCCC------------------CHH
Confidence 67889999999999999999999999999999999999999999999999976665 566
Q ss_pred hHHHHhcccCCC-CCcEEEEecChhhHH
Q 002521 636 SARQRRGRAGRV-QPGQCYHLYPRCVYE 662 (913)
Q Consensus 636 ~~~QR~GRAGR~-~~G~c~~L~t~~~~~ 662 (913)
+|+||+|||||. ..|.|+.+++..+..
T Consensus 328 ~yvqR~GRaGR~g~~G~ai~l~~~~d~~ 355 (456)
T PRK10590 328 DYVHRIGRTGRAAATGEALSLVCVDEHK 355 (456)
T ss_pred HhhhhccccccCCCCeeEEEEecHHHHH
Confidence 889999999998 789999999876544
No 23
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=1.1e-37 Score=368.49 Aligned_cols=320 Identities=19% Similarity=0.222 Sum_probs=220.2
Q ss_pred HHHHHHHHHHHHcCCeEEEEcCCCchHHhHHHHHHHHHHHHhC---CCCceEEEEcchhHHHHHHHHHHHHHHhCC-Ccc
Q 002521 252 FKEKERLLQAIARNQVIVISGETGCGKTTQLPQYILESEIESG---RGAFCNIICTQPRRISAMAVSERVSAERGE-PLG 327 (913)
Q Consensus 252 ~~~q~~il~~i~~~~~vII~apTGSGKTt~~~~~ile~~~~~~---~~~~~~Ilv~qPrr~La~qva~rv~~~~~~-~~g 327 (913)
++.|.++++.+..++++|++||||||||+++.++++..+.... .+....+|+++|||+||.|+.+.+.+.... .+.
T Consensus 154 t~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LIL~PTreLa~Qi~~~~~~~~~~~~i~ 233 (545)
T PTZ00110 154 TPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLVLAPTRELAEQIREQCNKFGASSKIR 233 (545)
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEEECChHHHHHHHHHHHHHHhcccCcc
Confidence 4568888999999999999999999999999999887765421 122335666669999999999888764321 111
Q ss_pred cEeeeEEec----cccCCCCceEEEEecHHHHHHHhcCC-CCCCceEEEeccccccCcchHHHHHHHHHhCccCccceEE
Q 002521 328 ETVGYKVRL----EGMKGKNTHLLFCTSGILLRRLLSDH-NLNGVTHVFVDEIHERGMNEDFLLIVLKDLLPRRRDLRLI 402 (913)
Q Consensus 328 ~~vGy~v~~----e~~~~~~~~Ivv~T~g~Ll~~l~~~~-~L~~~s~IIIDEaHer~~~~d~ll~llk~ll~~~~~~kiI 402 (913)
..+.|.... .......++|+|+|||+|++++.... .+.++++|||||||.+ +...+...+.+.+...+++.|++
T Consensus 234 ~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lViDEAd~m-ld~gf~~~i~~il~~~~~~~q~l 312 (545)
T PTZ00110 234 NTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESNVTNLRRVTYLVLDEADRM-LDMGFEPQIRKIVSQIRPDRQTL 312 (545)
T ss_pred EEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcCCCChhhCcEEEeehHHhh-hhcchHHHHHHHHHhCCCCCeEE
Confidence 111111100 01112457999999999999997654 7899999999999953 33444333333333345778999
Q ss_pred EeccccCHH--HHHh-hhCCCCe-eccCCccccceeeehhhHHhhhcccccccccccchhhhhHHHHhhhhchhhhhhhH
Q 002521 403 LMSATLNAE--LFSN-YFGGAPT-IHIPGFTYPVQAHFLEDVLEMTGYKLTSLNQVDDYGQEKLWKTQRQLLPRKRKNQI 478 (913)
Q Consensus 403 lmSATl~~~--~~~~-yf~~~~~-i~i~g~~~pv~~~yl~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 478 (913)
++|||++.+ .+.. ++...++ +.+....... ...+ .+.....
T Consensus 313 ~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~l~~------------------~~~i------------~q~~~~~----- 357 (545)
T PTZ00110 313 MWSATWPKEVQSLARDLCKEEPVHVNVGSLDLTA------------------CHNI------------KQEVFVV----- 357 (545)
T ss_pred EEEeCCCHHHHHHHHHHhccCCEEEEECCCcccc------------------CCCe------------eEEEEEE-----
Confidence 999999654 3333 3332222 1111000000 0000 0000000
Q ss_pred HHHHHHHHhhccccccchhhhhhhccccccccchhhHHHHHHHHhhhcCCCcEEEEcCChHHHHHHHHHHHcCCCCCCCC
Q 002521 479 TALVEDALHKSNFENYSSRARDSLASWTADCIGFNLIEAVLCHICRKECPGAVLVFMTGWEDISCLRDQLKSHPLLGDPN 558 (913)
Q Consensus 479 ~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~li~~ll~~i~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~~~~~ 558 (913)
........+..++..+.. ..+++||||++++.++.++..|...
T Consensus 358 ----------------------------~~~~k~~~L~~ll~~~~~--~~~k~LIF~~t~~~a~~l~~~L~~~------- 400 (545)
T PTZ00110 358 ----------------------------EEHEKRGKLKMLLQRIMR--DGDKILIFVETKKGADFLTKELRLD------- 400 (545)
T ss_pred ----------------------------echhHHHHHHHHHHHhcc--cCCeEEEEecChHHHHHHHHHHHHc-------
Confidence 000000111122222221 4678999999999999999999875
Q ss_pred CeEEEEecCCCChHHHHHHhccCCCCccEEEEecchhhhcCCCCCeEEEEeCCCCcceeecCCCCCCcCCccccCHhhHH
Q 002521 559 RVLLLTCHGSMPTSEQKFIFEKAPPNIRKIVLATNMAEASITINDIVFVVDCGKAKETTYDALNNTPCLLPSWISQASAR 638 (913)
Q Consensus 559 ~~~v~~lHs~l~~~er~~v~~~f~~g~~kVLVATniae~GIdIp~v~~VId~g~~k~~~yd~~~~~~~l~~~~iSka~~~ 638 (913)
++.+..+||++++++|..+++.|++|+.+|||||+++++|||||+|++||++++|. +..+|+
T Consensus 401 g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~~v~~VI~~d~P~------------------s~~~yv 462 (545)
T PTZ00110 401 GWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKDVKYVINFDFPN------------------QIEDYV 462 (545)
T ss_pred CCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcccCCEEEEeCCCC------------------CHHHHH
Confidence 67788999999999999999999999999999999999999999999999977765 667899
Q ss_pred HHhcccCCC-CCcEEEEecChhhHH
Q 002521 639 QRRGRAGRV-QPGQCYHLYPRCVYE 662 (913)
Q Consensus 639 QR~GRAGR~-~~G~c~~L~t~~~~~ 662 (913)
||+|||||. ..|.||.+++..+..
T Consensus 463 qRiGRtGR~G~~G~ai~~~~~~~~~ 487 (545)
T PTZ00110 463 HRIGRTGRAGAKGASYTFLTPDKYR 487 (545)
T ss_pred HHhcccccCCCCceEEEEECcchHH
Confidence 999999999 789999999987543
No 24
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=2.3e-37 Score=368.82 Aligned_cols=310 Identities=17% Similarity=0.199 Sum_probs=224.1
Q ss_pred CcHHHHHHHHHHHHcCCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHHHHHhCCCcccE
Q 002521 250 PSFKEKERLLQAIARNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVSAERGEPLGET 329 (913)
Q Consensus 250 P~~~~q~~il~~i~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv~~~~~~~~g~~ 329 (913)
..+++|.++++.+..++++|+.||||||||+++.+++++.+.....+ ..+||++|||+||.|+++.+....+...+..
T Consensus 28 ~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~~~~--~~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~ 105 (629)
T PRK11634 28 KPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPELKA--PQILVLAPTRELAVQVAEAMTDFSKHMRGVN 105 (629)
T ss_pred CCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhccCC--CeEEEEeCcHHHHHHHHHHHHHHHhhcCCce
Confidence 34567888999999999999999999999999999999877543333 3566666999999999999877654322322
Q ss_pred eeeEEecc------ccCCCCceEEEEecHHHHHHHhcCC-CCCCceEEEecccccc---CcchHHHHHHHHHhCccCccc
Q 002521 330 VGYKVRLE------GMKGKNTHLLFCTSGILLRRLLSDH-NLNGVTHVFVDEIHER---GMNEDFLLIVLKDLLPRRRDL 399 (913)
Q Consensus 330 vGy~v~~e------~~~~~~~~Ivv~T~g~Ll~~l~~~~-~L~~~s~IIIDEaHer---~~~~d~ll~llk~ll~~~~~~ 399 (913)
+....... ......++|+|+||+.|++++.... .++++++|||||||++ ++..++. .+++. .....
T Consensus 106 v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd~ml~~gf~~di~-~Il~~---lp~~~ 181 (629)
T PRK11634 106 VVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVE-TIMAQ---IPEGH 181 (629)
T ss_pred EEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEeccHHHHhhcccHHHHH-HHHHh---CCCCC
Confidence 22111111 1122468999999999999987665 7899999999999975 3333322 22222 23456
Q ss_pred eEEEeccccCHH---HHHhhhCCCCeeccCCccc---cceeeehhhHHhhhcccccccccccchhhhhHHHHhhhhchhh
Q 002521 400 RLILMSATLNAE---LFSNYFGGAPTIHIPGFTY---PVQAHFLEDVLEMTGYKLTSLNQVDDYGQEKLWKTQRQLLPRK 473 (913)
Q Consensus 400 kiIlmSATl~~~---~~~~yf~~~~~i~i~g~~~---pv~~~yl~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (913)
++++||||++.. ....|+.++..+.+..... .+...|..
T Consensus 182 q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~~~~~~i~q~~~~----------------------------------- 226 (629)
T PRK11634 182 QTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWT----------------------------------- 226 (629)
T ss_pred eEEEEEccCChhHHHHHHHHcCCCeEEEccCccccCCceEEEEEE-----------------------------------
Confidence 899999999653 2344555544444432211 01111100
Q ss_pred hhhhHHHHHHHHHhhccccccchhhhhhhccccccccchhhHHHHHHHHhhhcCCCcEEEEcCChHHHHHHHHHHHcCCC
Q 002521 474 RKNQITALVEDALHKSNFENYSSRARDSLASWTADCIGFNLIEAVLCHICRKECPGAVLVFMTGWEDISCLRDQLKSHPL 553 (913)
Q Consensus 474 ~~~~i~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~li~~ll~~i~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~ 553 (913)
+....+...+..++......++||||+++..+..+++.|...
T Consensus 227 ------------------------------------v~~~~k~~~L~~~L~~~~~~~~IVF~~tk~~a~~l~~~L~~~-- 268 (629)
T PRK11634 227 ------------------------------------VWGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERN-- 268 (629)
T ss_pred ------------------------------------echhhHHHHHHHHHHhcCCCCEEEEeccHHHHHHHHHHHHhC--
Confidence 000001112333334445678999999999999999999886
Q ss_pred CCCCCCeEEEEecCCCChHHHHHHhccCCCCccEEEEecchhhhcCCCCCeEEEEeCCCCcceeecCCCCCCcCCccccC
Q 002521 554 LGDPNRVLLLTCHGSMPTSEQKFIFEKAPPNIRKIVLATNMAEASITINDIVFVVDCGKAKETTYDALNNTPCLLPSWIS 633 (913)
Q Consensus 554 ~~~~~~~~v~~lHs~l~~~er~~v~~~f~~g~~kVLVATniae~GIdIp~v~~VId~g~~k~~~yd~~~~~~~l~~~~iS 633 (913)
++.+..+||+|++.+|..+++.|++|+.+|||||+++++|||+|+|++||+++.|. +
T Consensus 269 -----g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~VI~~d~P~------------------~ 325 (629)
T PRK11634 269 -----GYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPM------------------D 325 (629)
T ss_pred -----CCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCEEEEeCCCC------------------C
Confidence 77899999999999999999999999999999999999999999999999966554 6
Q ss_pred HhhHHHHhcccCCC-CCcEEEEecChhhH
Q 002521 634 QASARQRRGRAGRV-QPGQCYHLYPRCVY 661 (913)
Q Consensus 634 ka~~~QR~GRAGR~-~~G~c~~L~t~~~~ 661 (913)
..+|+||+|||||. +.|.++.+++..+.
T Consensus 326 ~e~yvqRiGRtGRaGr~G~ai~~v~~~e~ 354 (629)
T PRK11634 326 SESYVHRIGRTGRAGRAGRALLFVENRER 354 (629)
T ss_pred HHHHHHHhccccCCCCcceEEEEechHHH
Confidence 66899999999999 67999999987543
No 25
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=4.5e-37 Score=364.38 Aligned_cols=311 Identities=15% Similarity=0.189 Sum_probs=221.8
Q ss_pred HHHHHHHHHHHHcCCeEEEEcCCCchHHhHHHHHHHHHHHHhC-----CCCceEEEEcchhHHHHHHHHHHHHHHhCCCc
Q 002521 252 FKEKERLLQAIARNQVIVISGETGCGKTTQLPQYILESEIESG-----RGAFCNIICTQPRRISAMAVSERVSAERGEPL 326 (913)
Q Consensus 252 ~~~q~~il~~i~~~~~vII~apTGSGKTt~~~~~ile~~~~~~-----~~~~~~Ilv~qPrr~La~qva~rv~~~~~~~~ 326 (913)
++.|.+.++.+..+++++++||||||||+++.+++++.+.... ....+++|+++|||+||.|+++.+... +...
T Consensus 33 tpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raLIl~PTreLa~Qi~~~~~~l-~~~~ 111 (572)
T PRK04537 33 TPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRALILAPTRELAIQIHKDAVKF-GADL 111 (572)
T ss_pred CHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEEEEeCcHHHHHHHHHHHHHH-hccC
Confidence 4678888999999999999999999999999999998876421 112356777779999999999987654 3333
Q ss_pred ccEeeeEEecc------ccCCCCceEEEEecHHHHHHHhcCC--CCCCceEEEecccccc---CcchHHHHHHHHHhCcc
Q 002521 327 GETVGYKVRLE------GMKGKNTHLLFCTSGILLRRLLSDH--NLNGVTHVFVDEIHER---GMNEDFLLIVLKDLLPR 395 (913)
Q Consensus 327 g~~vGy~v~~e------~~~~~~~~Ivv~T~g~Ll~~l~~~~--~L~~~s~IIIDEaHer---~~~~d~ll~llk~ll~~ 395 (913)
+..++...... .....+++|+|+||++|++.+.... .+..+++|||||||+. ++..++. .++ ..++.
T Consensus 112 ~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDEAh~lld~gf~~~i~-~il-~~lp~ 189 (572)
T PRK04537 112 GLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIR-FLL-RRMPE 189 (572)
T ss_pred CceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEecCHHHHhhcchHHHHH-HHH-Hhccc
Confidence 33333222111 1123457999999999999987643 6888999999999954 2222222 122 22333
Q ss_pred CccceEEEeccccCHHH---HHhhhCCCCeeccCCcccc---ceeeehhhHHhhhcccccccccccchhhhhHHHHhhhh
Q 002521 396 RRDLRLILMSATLNAEL---FSNYFGGAPTIHIPGFTYP---VQAHFLEDVLEMTGYKLTSLNQVDDYGQEKLWKTQRQL 469 (913)
Q Consensus 396 ~~~~kiIlmSATl~~~~---~~~yf~~~~~i~i~g~~~p---v~~~yl~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (913)
+.+.|+++||||++... ...++..+..+.+...... +...+.
T Consensus 190 ~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~-------------------------------- 237 (572)
T PRK04537 190 RGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIY-------------------------------- 237 (572)
T ss_pred ccCceEEEEeCCccHHHHHHHHHHhcCCcEEEeccccccccceeEEEE--------------------------------
Confidence 34679999999997542 2334433322222111100 000000
Q ss_pred chhhhhhhHHHHHHHHHhhccccccchhhhhhhccccccccchhhHHHHHHHHhhhcCCCcEEEEcCChHHHHHHHHHHH
Q 002521 470 LPRKRKNQITALVEDALHKSNFENYSSRARDSLASWTADCIGFNLIEAVLCHICRKECPGAVLVFMTGWEDISCLRDQLK 549 (913)
Q Consensus 470 ~~~~~~~~i~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~li~~ll~~i~~~~~~g~iLVF~~~~~~i~~l~~~L~ 549 (913)
. .........+..++......++||||+++..++.+++.|.
T Consensus 238 --------------------------------------~-~~~~~k~~~L~~ll~~~~~~k~LVF~nt~~~ae~l~~~L~ 278 (572)
T PRK04537 238 --------------------------------------F-PADEEKQTLLLGLLSRSEGARTMVFVNTKAFVERVARTLE 278 (572)
T ss_pred --------------------------------------e-cCHHHHHHHHHHHHhcccCCcEEEEeCCHHHHHHHHHHHH
Confidence 0 0000111223334444556789999999999999999998
Q ss_pred cCCCCCCCCCeEEEEecCCCChHHHHHHhccCCCCccEEEEecchhhhcCCCCCeEEEEeCCCCcceeecCCCCCCcCCc
Q 002521 550 SHPLLGDPNRVLLLTCHGSMPTSEQKFIFEKAPPNIRKIVLATNMAEASITINDIVFVVDCGKAKETTYDALNNTPCLLP 629 (913)
Q Consensus 550 ~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~g~~kVLVATniae~GIdIp~v~~VId~g~~k~~~yd~~~~~~~l~~ 629 (913)
.. ++.+..+||+|++.+|..+++.|++|+.+|||||+++++|||||+|++||+++.|.
T Consensus 279 ~~-------g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip~V~~VInyd~P~--------------- 336 (572)
T PRK04537 279 RH-------GYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVKYVYNYDLPF--------------- 336 (572)
T ss_pred Hc-------CCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCccCCCEEEEcCCCC---------------
Confidence 76 67899999999999999999999999999999999999999999999999966654
Q ss_pred cccCHhhHHHHhcccCCC-CCcEEEEecChhhH
Q 002521 630 SWISQASARQRRGRAGRV-QPGQCYHLYPRCVY 661 (913)
Q Consensus 630 ~~iSka~~~QR~GRAGR~-~~G~c~~L~t~~~~ 661 (913)
+..+|+||+|||||. ..|.|+.|++..+.
T Consensus 337 ---s~~~yvqRiGRaGR~G~~G~ai~~~~~~~~ 366 (572)
T PRK04537 337 ---DAEDYVHRIGRTARLGEEGDAISFACERYA 366 (572)
T ss_pred ---CHHHHhhhhcccccCCCCceEEEEecHHHH
Confidence 667899999999999 78999999887543
No 26
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.1e-37 Score=361.33 Aligned_cols=320 Identities=20% Similarity=0.284 Sum_probs=229.1
Q ss_pred hcCCCcHHHHHHHHHHHHcCCeEEEEcCCCchHHhHHHHHHHHHHHH-hCCCCceEEEEcchhHHHHHHHHHHHHHHhCC
Q 002521 246 RKSLPSFKEKERLLQAIARNQVIVISGETGCGKTTQLPQYILESEIE-SGRGAFCNIICTQPRRISAMAVSERVSAERGE 324 (913)
Q Consensus 246 r~~lP~~~~q~~il~~i~~~~~vII~apTGSGKTt~~~~~ile~~~~-~~~~~~~~Ilv~qPrr~La~qva~rv~~~~~~ 324 (913)
.+..|. +.|...++.+..++++++.|+||||||.++.+++++.+.. ....... .++++|||+||.|+++.+......
T Consensus 48 gf~~pt-~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~-aLil~PTRELA~Qi~~~~~~~~~~ 125 (513)
T COG0513 48 GFEEPT-PIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVS-ALILAPTRELAVQIAEELRKLGKN 125 (513)
T ss_pred CCCCCC-HHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcccccCCCc-eEEECCCHHHHHHHHHHHHHHHhh
Confidence 344443 4577788888899999999999999999999999999652 1211110 455559999999999988765432
Q ss_pred C--cc--cEee---eEEeccccCCCCceEEEEecHHHHHHHhcCC-CCCCceEEEeccccccCcchHHHHHHHHHhCccC
Q 002521 325 P--LG--ETVG---YKVRLEGMKGKNTHLLFCTSGILLRRLLSDH-NLNGVTHVFVDEIHERGMNEDFLLIVLKDLLPRR 396 (913)
Q Consensus 325 ~--~g--~~vG---y~v~~e~~~~~~~~Ivv~T~g~Ll~~l~~~~-~L~~~s~IIIDEaHer~~~~d~ll~llk~ll~~~ 396 (913)
. +. ..+| +..+..... ..++|+|+|||+|++++.... .++++.++|+|||+++ ++..|...+.+.+....
T Consensus 126 ~~~~~~~~i~GG~~~~~q~~~l~-~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEADrm-Ld~Gf~~~i~~I~~~~p 203 (513)
T COG0513 126 LGGLRVAVVYGGVSIRKQIEALK-RGVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEADRM-LDMGFIDDIEKILKALP 203 (513)
T ss_pred cCCccEEEEECCCCHHHHHHHHh-cCCCEEEECccHHHHHHHcCCcchhhcCEEEeccHhhh-hcCCCHHHHHHHHHhCC
Confidence 2 11 1122 111222222 258999999999999998774 8999999999999953 33333333322222333
Q ss_pred ccceEEEeccccCHH---HHHhhhCCCCeeccCCccccceeeehhhHHhhhcccccccccccchhhhhHHHHhhhhchhh
Q 002521 397 RDLRLILMSATLNAE---LFSNYFGGAPTIHIPGFTYPVQAHFLEDVLEMTGYKLTSLNQVDDYGQEKLWKTQRQLLPRK 473 (913)
Q Consensus 397 ~~~kiIlmSATl~~~---~~~~yf~~~~~i~i~g~~~pv~~~yl~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (913)
++.|++++|||++.. ....|+.++..+.+.....
T Consensus 204 ~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~------------------------------------------- 240 (513)
T COG0513 204 PDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKL------------------------------------------- 240 (513)
T ss_pred cccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccc-------------------------------------------
Confidence 478999999999763 2223444333333321000
Q ss_pred hhhhHHHHHHHHHhhccccccchhhhhhhccccccccchhhHHHHHHHHhhhcCCCcEEEEcCChHHHHHHHHHHHcCCC
Q 002521 474 RKNQITALVEDALHKSNFENYSSRARDSLASWTADCIGFNLIEAVLCHICRKECPGAVLVFMTGWEDISCLRDQLKSHPL 553 (913)
Q Consensus 474 ~~~~i~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~li~~ll~~i~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~ 553 (913)
..+...+.++.........+..++..++.....+.+||||+++..++.++..|...
T Consensus 241 ----------------------~~~~~~i~q~~~~v~~~~~k~~~L~~ll~~~~~~~~IVF~~tk~~~~~l~~~l~~~-- 296 (513)
T COG0513 241 ----------------------ERTLKKIKQFYLEVESEEEKLELLLKLLKDEDEGRVIVFVRTKRLVEELAESLRKR-- 296 (513)
T ss_pred ----------------------cccccCceEEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHHC--
Confidence 00001111111122222235566778888777788999999999999999999987
Q ss_pred CCCCCCeEEEEecCCCChHHHHHHhccCCCCccEEEEecchhhhcCCCCCeEEEEeCCCCcceeecCCCCCCcCCccccC
Q 002521 554 LGDPNRVLLLTCHGSMPTSEQKFIFEKAPPNIRKIVLATNMAEASITINDIVFVVDCGKAKETTYDALNNTPCLLPSWIS 633 (913)
Q Consensus 554 ~~~~~~~~v~~lHs~l~~~er~~v~~~f~~g~~kVLVATniae~GIdIp~v~~VId~g~~k~~~yd~~~~~~~l~~~~iS 633 (913)
++.+..+||+|++++|..+++.|++|..+||||||++++|||||+|.+|||++.|. +
T Consensus 297 -----g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v~~VinyD~p~------------------~ 353 (513)
T COG0513 297 -----GFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVSHVINYDLPL------------------D 353 (513)
T ss_pred -----CCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCccccceeEEccCCC------------------C
Confidence 78999999999999999999999999999999999999999999999999955554 4
Q ss_pred HhhHHHHhcccCCC-CCcEEEEecChh
Q 002521 634 QASARQRRGRAGRV-QPGQCYHLYPRC 659 (913)
Q Consensus 634 ka~~~QR~GRAGR~-~~G~c~~L~t~~ 659 (913)
...|+||+||+||. ..|.++.|++..
T Consensus 354 ~e~yvHRiGRTgRaG~~G~ai~fv~~~ 380 (513)
T COG0513 354 PEDYVHRIGRTGRAGRKGVAISFVTEE 380 (513)
T ss_pred HHHheeccCccccCCCCCeEEEEeCcH
Confidence 45777999999999 889999999864
No 27
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=5.5e-37 Score=359.13 Aligned_cols=327 Identities=17% Similarity=0.206 Sum_probs=227.7
Q ss_pred CchhhhHHhhhcCCCcHHHHHHHHHHHHcCCeEEEEcCCCchHHhHHHHHHHHHHHHhCCC-----CceEEEEcchhHHH
Q 002521 236 SPEGNKMLDFRKSLPSFKEKERLLQAIARNQVIVISGETGCGKTTQLPQYILESEIESGRG-----AFCNIICTQPRRIS 310 (913)
Q Consensus 236 ~~~~~~l~~~r~~lP~~~~q~~il~~i~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~-----~~~~Ilv~qPrr~L 310 (913)
++.....+....---.+++|.++++.+.+++++|+++|||||||+++.+++++.+...... ...++++++||++|
T Consensus 95 ~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~aLil~PtreL 174 (475)
T PRK01297 95 APELMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRALIIAPTREL 174 (475)
T ss_pred CHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceEEEEeCcHHH
Confidence 3334443333333345788999999999999999999999999999999999988654311 12456666699999
Q ss_pred HHHHHHHHHHHhCCCcccEeeeEEe-------ccccCCCCceEEEEecHHHHHHHhcCC-CCCCceEEEeccccccCcch
Q 002521 311 AMAVSERVSAERGEPLGETVGYKVR-------LEGMKGKNTHLLFCTSGILLRRLLSDH-NLNGVTHVFVDEIHERGMNE 382 (913)
Q Consensus 311 a~qva~rv~~~~~~~~g~~vGy~v~-------~e~~~~~~~~Ivv~T~g~Ll~~l~~~~-~L~~~s~IIIDEaHer~~~~ 382 (913)
|.|+++.+...... .+..+.-... ........++|+|+||++|+..+.... .++++++|||||+|.. ...
T Consensus 175 a~Q~~~~~~~l~~~-~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lViDEah~l-~~~ 252 (475)
T PRK01297 175 VVQIAKDAAALTKY-TGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRM-LDM 252 (475)
T ss_pred HHHHHHHHHHhhcc-CCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCCcccccCceEEechHHHH-Hhc
Confidence 99999988764322 2222211111 112223567999999999998876544 7899999999999953 122
Q ss_pred HHHHHH--HHHhCccCccceEEEeccccCHH--HHH-hhhCCCCeeccCCcccc---ceeeehhhHHhhhcccccccccc
Q 002521 383 DFLLIV--LKDLLPRRRDLRLILMSATLNAE--LFS-NYFGGAPTIHIPGFTYP---VQAHFLEDVLEMTGYKLTSLNQV 454 (913)
Q Consensus 383 d~ll~l--lk~ll~~~~~~kiIlmSATl~~~--~~~-~yf~~~~~i~i~g~~~p---v~~~yl~di~~~~~~~~~~~~~~ 454 (913)
.+...+ +........+.++|++|||++.+ .+. .|..++..+.+...... +..++.
T Consensus 253 ~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~----------------- 315 (475)
T PRK01297 253 GFIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPENVASDTVEQHVY----------------- 315 (475)
T ss_pred ccHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccCCEEEEeccCcCCCCcccEEEE-----------------
Confidence 222111 11223333456899999998643 233 34333333222211000 000000
Q ss_pred cchhhhhHHHHhhhhchhhhhhhHHHHHHHHHhhccccccchhhhhhhccccccccchhhHHHHHHHHhhhcCCCcEEEE
Q 002521 455 DDYGQEKLWKTQRQLLPRKRKNQITALVEDALHKSNFENYSSRARDSLASWTADCIGFNLIEAVLCHICRKECPGAVLVF 534 (913)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~li~~ll~~i~~~~~~g~iLVF 534 (913)
.+.......++..++......++|||
T Consensus 316 ------------------------------------------------------~~~~~~k~~~l~~ll~~~~~~~~IVF 341 (475)
T PRK01297 316 ------------------------------------------------------AVAGSDKYKLLYNLVTQNPWERVMVF 341 (475)
T ss_pred ------------------------------------------------------EecchhHHHHHHHHHHhcCCCeEEEE
Confidence 00000111233444444556789999
Q ss_pred cCChHHHHHHHHHHHcCCCCCCCCCeEEEEecCCCChHHHHHHhccCCCCccEEEEecchhhhcCCCCCeEEEEeCCCCc
Q 002521 535 MTGWEDISCLRDQLKSHPLLGDPNRVLLLTCHGSMPTSEQKFIFEKAPPNIRKIVLATNMAEASITINDIVFVVDCGKAK 614 (913)
Q Consensus 535 ~~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~g~~kVLVATniae~GIdIp~v~~VId~g~~k 614 (913)
|+++++++.+++.|... ++.+..+||+++.++|..+++.|++|+++|||||+++++|||||++++||++|+|.
T Consensus 342 ~~s~~~~~~l~~~L~~~-------~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi~~v~~VI~~~~P~ 414 (475)
T PRK01297 342 ANRKDEVRRIEERLVKD-------GINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVINFTLPE 414 (475)
T ss_pred eCCHHHHHHHHHHHHHc-------CCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCcccCCCEEEEeCCCC
Confidence 99999999999999875 67788999999999999999999999999999999999999999999999977775
Q ss_pred ceeecCCCCCCcCCccccCHhhHHHHhcccCCC-CCcEEEEecChhh
Q 002521 615 ETTYDALNNTPCLLPSWISQASARQRRGRAGRV-QPGQCYHLYPRCV 660 (913)
Q Consensus 615 ~~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~-~~G~c~~L~t~~~ 660 (913)
|.++|+||+|||||. +.|.++.++++++
T Consensus 415 ------------------s~~~y~Qr~GRaGR~g~~g~~i~~~~~~d 443 (475)
T PRK01297 415 ------------------DPDDYVHRIGRTGRAGASGVSISFAGEDD 443 (475)
T ss_pred ------------------CHHHHHHhhCccCCCCCCceEEEEecHHH
Confidence 778999999999999 6899999998764
No 28
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=2e-36 Score=356.59 Aligned_cols=310 Identities=16% Similarity=0.190 Sum_probs=216.2
Q ss_pred HHHHHHHHHHHHcCCeEEEEcCCCchHHhHHHHHHHHHHHHhC-----CCCceEEEEcchhHHHHHHHHHHHHHHhCCCc
Q 002521 252 FKEKERLLQAIARNQVIVISGETGCGKTTQLPQYILESEIESG-----RGAFCNIICTQPRRISAMAVSERVSAERGEPL 326 (913)
Q Consensus 252 ~~~q~~il~~i~~~~~vII~apTGSGKTt~~~~~ile~~~~~~-----~~~~~~Ilv~qPrr~La~qva~rv~~~~~~~~ 326 (913)
++.|.++++.+..+++++++||||||||+++.++++..+.... .+....+++++|||+||.|+.+.+.... ..+
T Consensus 145 tpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLIL~PTreLa~Qi~~~~~~l~-~~~ 223 (518)
T PLN00206 145 TPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVLTPTRELCVQVEDQAKVLG-KGL 223 (518)
T ss_pred CHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceEEEEeCCHHHHHHHHHHHHHHh-CCC
Confidence 4568888999999999999999999999999999998765321 1123456666699999999988776543 222
Q ss_pred ccEeeeEEeccc------cCCCCceEEEEecHHHHHHHhcCC-CCCCceEEEecccccc---CcchHHHHHHHHHhCccC
Q 002521 327 GETVGYKVRLEG------MKGKNTHLLFCTSGILLRRLLSDH-NLNGVTHVFVDEIHER---GMNEDFLLIVLKDLLPRR 396 (913)
Q Consensus 327 g~~vGy~v~~e~------~~~~~~~Ivv~T~g~Ll~~l~~~~-~L~~~s~IIIDEaHer---~~~~d~ll~llk~ll~~~ 396 (913)
+..+......+. ....+.+|+|+|||+|++.+.... .++++++|||||||.. ++..++. .++...
T Consensus 224 ~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~lViDEad~ml~~gf~~~i~-----~i~~~l 298 (518)
T PLN00206 224 PFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKHDIELDNVSVLVLDEVDCMLERGFRDQVM-----QIFQAL 298 (518)
T ss_pred CceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcCCccchheeEEEeecHHHHhhcchHHHHH-----HHHHhC
Confidence 221111111111 122457999999999999987654 7899999999999953 3332222 222223
Q ss_pred ccceEEEeccccCHH--HHHhhhCCCCe-eccCCcccc---ceeeehhhHHhhhcccccccccccchhhhhHHHHhhhhc
Q 002521 397 RDLRLILMSATLNAE--LFSNYFGGAPT-IHIPGFTYP---VQAHFLEDVLEMTGYKLTSLNQVDDYGQEKLWKTQRQLL 470 (913)
Q Consensus 397 ~~~kiIlmSATl~~~--~~~~yf~~~~~-i~i~g~~~p---v~~~yl~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (913)
++.|++++|||++.+ .+...+...++ +.+.....+ +...+..
T Consensus 299 ~~~q~l~~SATl~~~v~~l~~~~~~~~~~i~~~~~~~~~~~v~q~~~~-------------------------------- 346 (518)
T PLN00206 299 SQPQVLLFSATVSPEVEKFASSLAKDIILISIGNPNRPNKAVKQLAIW-------------------------------- 346 (518)
T ss_pred CCCcEEEEEeeCCHHHHHHHHHhCCCCEEEEeCCCCCCCcceeEEEEe--------------------------------
Confidence 567999999999653 45555543332 222211100 0000000
Q ss_pred hhhhhhhHHHHHHHHHhhccccccchhhhhhhccccccccchhhHHHHHHHHhhh--cCCCcEEEEcCChHHHHHHHHHH
Q 002521 471 PRKRKNQITALVEDALHKSNFENYSSRARDSLASWTADCIGFNLIEAVLCHICRK--ECPGAVLVFMTGWEDISCLRDQL 548 (913)
Q Consensus 471 ~~~~~~~i~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~li~~ll~~i~~~--~~~g~iLVF~~~~~~i~~l~~~L 548 (913)
... .+.. ..+..++.. ...+++||||+++..++.+++.|
T Consensus 347 -~~~-------------------------------------~~k~-~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L 387 (518)
T PLN00206 347 -VET-------------------------------------KQKK-QKLFDILKSKQHFKPPAVVFVSSRLGADLLANAI 387 (518)
T ss_pred -ccc-------------------------------------hhHH-HHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHH
Confidence 000 0000 001111111 12367999999999999999999
Q ss_pred HcCCCCCCCCCeEEEEecCCCChHHHHHHhccCCCCccEEEEecchhhhcCCCCCeEEEEeCCCCcceeecCCCCCCcCC
Q 002521 549 KSHPLLGDPNRVLLLTCHGSMPTSEQKFIFEKAPPNIRKIVLATNMAEASITINDIVFVVDCGKAKETTYDALNNTPCLL 628 (913)
Q Consensus 549 ~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~g~~kVLVATniae~GIdIp~v~~VId~g~~k~~~yd~~~~~~~l~ 628 (913)
... .++.+..+||+|+..+|..+++.|++|+.+|||||+++++|||+|+|++||+++.|.
T Consensus 388 ~~~------~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDip~v~~VI~~d~P~-------------- 447 (518)
T PLN00206 388 TVV------TGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRGVDLLRVRQVIIFDMPN-------------- 447 (518)
T ss_pred hhc------cCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhccCCcccCCEEEEeCCCC--------------
Confidence 753 267789999999999999999999999999999999999999999999999966654
Q ss_pred ccccCHhhHHHHhcccCCC-CCcEEEEecChhhHH
Q 002521 629 PSWISQASARQRRGRAGRV-QPGQCYHLYPRCVYE 662 (913)
Q Consensus 629 ~~~iSka~~~QR~GRAGR~-~~G~c~~L~t~~~~~ 662 (913)
|..+|+||+|||||. ..|.++.+++.++..
T Consensus 448 ----s~~~yihRiGRaGR~g~~G~ai~f~~~~~~~ 478 (518)
T PLN00206 448 ----TIKEYIHQIGRASRMGEKGTAIVFVNEEDRN 478 (518)
T ss_pred ----CHHHHHHhccccccCCCCeEEEEEEchhHHH
Confidence 677999999999999 689999999876543
No 29
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=3.8e-36 Score=345.54 Aligned_cols=314 Identities=15% Similarity=0.218 Sum_probs=218.8
Q ss_pred HHHHHHHHHHHHcCCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHHHHHhCCCcccEee
Q 002521 252 FKEKERLLQAIARNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVSAERGEPLGETVG 331 (913)
Q Consensus 252 ~~~q~~il~~i~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv~~~~~~~~g~~vG 331 (913)
++.|.++++.+..+++++++||||||||+++.+++++.+... ...+++++++|+++||.|+.+.+..... ..+..++
T Consensus 52 ~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~--~~~~~~lil~Pt~~L~~Q~~~~~~~~~~-~~~~~~~ 128 (401)
T PTZ00424 52 SAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYD--LNACQALILAPTRELAQQIQKVVLALGD-YLKVRCH 128 (401)
T ss_pred CHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCC--CCCceEEEECCCHHHHHHHHHHHHHHhh-hcCceEE
Confidence 456888899999999999999999999999999998765321 2234677777999999999887765432 2222221
Q ss_pred eEEec----c--ccCCCCceEEEEecHHHHHHHhcCC-CCCCceEEEeccccccCcchHHHHHHHHHhCccCccceEEEe
Q 002521 332 YKVRL----E--GMKGKNTHLLFCTSGILLRRLLSDH-NLNGVTHVFVDEIHERGMNEDFLLIVLKDLLPRRRDLRLILM 404 (913)
Q Consensus 332 y~v~~----e--~~~~~~~~Ivv~T~g~Ll~~l~~~~-~L~~~s~IIIDEaHer~~~~d~ll~llk~ll~~~~~~kiIlm 404 (913)
..... + .....+.+|+|+||+.|.+.+.... .++++++|||||||+.. ...+...+...+....++.|+|++
T Consensus 129 ~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah~~~-~~~~~~~~~~i~~~~~~~~~~i~~ 207 (401)
T PTZ00424 129 ACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEADEML-SRGFKGQIYDVFKKLPPDVQVALF 207 (401)
T ss_pred EEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEEecHHHHH-hcchHHHHHHHHhhCCCCcEEEEE
Confidence 11111 0 1112346999999999999887655 78999999999999532 111211122222234467899999
Q ss_pred ccccCHHH--HH-hhhCCCCeeccCCcccc---ceeeehhhHHhhhcccccccccccchhhhhHHHHhhhhchhhhhhhH
Q 002521 405 SATLNAEL--FS-NYFGGAPTIHIPGFTYP---VQAHFLEDVLEMTGYKLTSLNQVDDYGQEKLWKTQRQLLPRKRKNQI 478 (913)
Q Consensus 405 SATl~~~~--~~-~yf~~~~~i~i~g~~~p---v~~~yl~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 478 (913)
|||++.+. +. .|+..+..+.+...... +..+|..
T Consensus 208 SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------------- 247 (401)
T PTZ00424 208 SATMPNEILELTTKFMRDPKRILVKKDELTLEGIRQFYVA---------------------------------------- 247 (401)
T ss_pred EecCCHHHHHHHHHHcCCCEEEEeCCCCcccCCceEEEEe----------------------------------------
Confidence 99997642 22 33333222222111100 0000000
Q ss_pred HHHHHHHHhhccccccchhhhhhhccccccccchhhHHHHHHHHhhhcCCCcEEEEcCChHHHHHHHHHHHcCCCCCCCC
Q 002521 479 TALVEDALHKSNFENYSSRARDSLASWTADCIGFNLIEAVLCHICRKECPGAVLVFMTGWEDISCLRDQLKSHPLLGDPN 558 (913)
Q Consensus 479 ~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~li~~ll~~i~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~~~~~ 558 (913)
..........+..+.......++||||+++++++.+++.|...
T Consensus 248 ------------------------------~~~~~~~~~~l~~~~~~~~~~~~ivF~~t~~~~~~l~~~l~~~------- 290 (401)
T PTZ00424 248 ------------------------------VEKEEWKFDTLCDLYETLTITQAIIYCNTRRKVDYLTKKMHER------- 290 (401)
T ss_pred ------------------------------cChHHHHHHHHHHHHHhcCCCeEEEEecCcHHHHHHHHHHHHC-------
Confidence 0000001112233333344567999999999999999999875
Q ss_pred CeEEEEecCCCChHHHHHHhccCCCCccEEEEecchhhhcCCCCCeEEEEeCCCCcceeecCCCCCCcCCccccCHhhHH
Q 002521 559 RVLLLTCHGSMPTSEQKFIFEKAPPNIRKIVLATNMAEASITINDIVFVVDCGKAKETTYDALNNTPCLLPSWISQASAR 638 (913)
Q Consensus 559 ~~~v~~lHs~l~~~er~~v~~~f~~g~~kVLVATniae~GIdIp~v~~VId~g~~k~~~yd~~~~~~~l~~~~iSka~~~ 638 (913)
++.+..+||+|+.++|..+++.|++|+++|||||+++++|||+|++++||+++.|. |..+|.
T Consensus 291 ~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~VI~~~~p~------------------s~~~y~ 352 (401)
T PTZ00424 291 DFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSLVINYDLPA------------------SPENYI 352 (401)
T ss_pred CCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCCEEEEECCCC------------------CHHHEe
Confidence 67799999999999999999999999999999999999999999999999966654 677888
Q ss_pred HHhcccCCC-CCcEEEEecChhhHHhh
Q 002521 639 QRRGRAGRV-QPGQCYHLYPRCVYEAF 664 (913)
Q Consensus 639 QR~GRAGR~-~~G~c~~L~t~~~~~~l 664 (913)
||+|||||. ..|.|+.|+++++.+.+
T Consensus 353 qr~GRagR~g~~G~~i~l~~~~~~~~~ 379 (401)
T PTZ00424 353 HRIGRSGRFGRKGVAINFVTPDDIEQL 379 (401)
T ss_pred ecccccccCCCCceEEEEEcHHHHHHH
Confidence 999999998 68999999998876543
No 30
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=3.5e-36 Score=327.65 Aligned_cols=336 Identities=20% Similarity=0.244 Sum_probs=244.4
Q ss_pred HHHHHHHhhcCchhhh----HHhhhcCCCcHHHHHHHHHHHHcCCeEEEEcCCCchHHhHHHHHHHHHHHH---------
Q 002521 226 MRNMQRAWQESPEGNK----MLDFRKSLPSFKEKERLLQAIARNQVIVISGETGCGKTTQLPQYILESEIE--------- 292 (913)
Q Consensus 226 ~~~~~~~~~~~~~~~~----l~~~r~~lP~~~~q~~il~~i~~~~~vII~apTGSGKTt~~~~~ile~~~~--------- 292 (913)
+..+.+.|.+++-..+ +..-+...|.. .|..+++..++++++|..|+||||||.+++++++..+..
T Consensus 240 lpnplrnwEE~~~P~e~l~~I~~~~y~eptp-IqR~aipl~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en 318 (673)
T KOG0333|consen 240 LPNPLRNWEESGFPLELLSVIKKPGYKEPTP-IQRQAIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLEN 318 (673)
T ss_pred CCccccChhhcCCCHHHHHHHHhcCCCCCch-HHHhhccchhccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhh
Confidence 4556667877654333 33445566664 456677788899999999999999999999998876532
Q ss_pred hCCCCceEEEEcchhHHHHHHHHHHHHH---HhCCCcccEeeeEEeccc--cCCCCceEEEEecHHHHHHHhcCC-CCCC
Q 002521 293 SGRGAFCNIICTQPRRISAMAVSERVSA---ERGEPLGETVGYKVRLEG--MKGKNTHLLFCTSGILLRRLLSDH-NLNG 366 (913)
Q Consensus 293 ~~~~~~~~Ilv~qPrr~La~qva~rv~~---~~~~~~g~~vGy~v~~e~--~~~~~~~Ivv~T~g~Ll~~l~~~~-~L~~ 366 (913)
...|+.+.|+ .|||+||.|+.+.-.+ .+|..+...||-...-+. ..+..++|+|+|||.|++.|.+.. .+++
T Consensus 319 ~~~gpyaiil--aptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~fqls~gceiviatPgrLid~Lenr~lvl~q 396 (673)
T KOG0333|consen 319 NIEGPYAIIL--APTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQGFQLSMGCEIVIATPGRLIDSLENRYLVLNQ 396 (673)
T ss_pred cccCceeeee--chHHHHHHHHHHHHHHhcccccceEEEEecccchhhhhhhhhccceeeecCchHHHHHHHHHHHHhcc
Confidence 2234544444 4999999999665433 233333344443333233 345779999999999999886654 7899
Q ss_pred ceEEEeccccc---cCcchHHHHHHHHHhCcc---C--------------------ccceEEEeccccCHH---HHHhhh
Q 002521 367 VTHVFVDEIHE---RGMNEDFLLIVLKDLLPR---R--------------------RDLRLILMSATLNAE---LFSNYF 417 (913)
Q Consensus 367 ~s~IIIDEaHe---r~~~~d~ll~llk~ll~~---~--------------------~~~kiIlmSATl~~~---~~~~yf 417 (913)
+.+||+|||++ +|+..|+...+- .++. . .-.+.+++|||+++. ....||
T Consensus 397 ctyvvldeadrmiDmgfE~dv~~iL~--~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~verlar~yl 474 (673)
T KOG0333|consen 397 CTYVVLDEADRMIDMGFEPDVQKILE--QMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVERLARSYL 474 (673)
T ss_pred CceEeccchhhhhcccccHHHHHHHH--hCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHHHHHHHHh
Confidence 99999999995 467666654441 1110 0 115799999999763 566788
Q ss_pred CCCCeeccC--Cccccc-eeeehhhHHhhhcccccccccccchhhhhHHHHhhhhchhhhhhhHHHHHHHHHhhcccccc
Q 002521 418 GGAPTIHIP--GFTYPV-QAHFLEDVLEMTGYKLTSLNQVDDYGQEKLWKTQRQLLPRKRKNQITALVEDALHKSNFENY 494 (913)
Q Consensus 418 ~~~~~i~i~--g~~~pv-~~~yl~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~~l~~~~~~~~ 494 (913)
..+.++++. |+..|- +..+.
T Consensus 475 r~pv~vtig~~gk~~~rveQ~v~--------------------------------------------------------- 497 (673)
T KOG0333|consen 475 RRPVVVTIGSAGKPTPRVEQKVE--------------------------------------------------------- 497 (673)
T ss_pred hCCeEEEeccCCCCccchheEEE---------------------------------------------------------
Confidence 887777665 332221 11100
Q ss_pred chhhhhhhccccccccchhhHHHHHHHHhhhcCCCcEEEEcCChHHHHHHHHHHHcCCCCCCCCCeEEEEecCCCChHHH
Q 002521 495 SSRARDSLASWTADCIGFNLIEAVLCHICRKECPGAVLVFMTGWEDISCLRDQLKSHPLLGDPNRVLLLTCHGSMPTSEQ 574 (913)
Q Consensus 495 ~~~~~~~l~~~~~~~~~~~li~~ll~~i~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lHs~l~~~er 574 (913)
.+..+-...-|..++.+....++|||+|+++.|+.+++.|.+. ++.+..|||+-++++|
T Consensus 498 --------------m~~ed~k~kkL~eil~~~~~ppiIIFvN~kk~~d~lAk~LeK~-------g~~~~tlHg~k~qeQR 556 (673)
T KOG0333|consen 498 --------------MVSEDEKRKKLIEILESNFDPPIIIFVNTKKGADALAKILEKA-------GYKVTTLHGGKSQEQR 556 (673)
T ss_pred --------------EecchHHHHHHHHHHHhCCCCCEEEEEechhhHHHHHHHHhhc-------cceEEEeeCCccHHHH
Confidence 0000000112333444445678999999999999999999987 8999999999999999
Q ss_pred HHHhccCCCCccEEEEecchhhhcCCCCCeEEEEeCCCCcceeecCCCCCCcCCccccCHhhHHHHhcccCCC-CCcEEE
Q 002521 575 KFIFEKAPPNIRKIVLATNMAEASITINDIVFVVDCGKAKETTYDALNNTPCLLPSWISQASARQRRGRAGRV-QPGQCY 653 (913)
Q Consensus 575 ~~v~~~f~~g~~kVLVATniae~GIdIp~v~~VId~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~-~~G~c~ 653 (913)
..++..|++|...|+||||+|++|||||+|.+|||++++| |-..|.||+||+||. +.|.++
T Consensus 557 e~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVinydmak------------------sieDYtHRIGRTgRAGk~Gtai 618 (673)
T KOG0333|consen 557 ENALADFREGTGDILVATDVAGRGIDIPNVSLVINYDMAK------------------SIEDYTHRIGRTGRAGKSGTAI 618 (673)
T ss_pred HHHHHHHHhcCCCEEEEecccccCCCCCccceeeecchhh------------------hHHHHHHHhccccccccCceeE
Confidence 9999999999999999999999999999999999977777 666899999999999 789999
Q ss_pred EecChhhHH
Q 002521 654 HLYPRCVYE 662 (913)
Q Consensus 654 ~L~t~~~~~ 662 (913)
.++++.+-+
T Consensus 619 Sflt~~dt~ 627 (673)
T KOG0333|consen 619 SFLTPADTA 627 (673)
T ss_pred EEeccchhH
Confidence 999998733
No 31
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=6.6e-36 Score=363.01 Aligned_cols=328 Identities=18% Similarity=0.166 Sum_probs=220.1
Q ss_pred CcHHHHHHHHHHHHcCCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHHHHHhCCCcccE
Q 002521 250 PSFKEKERLLQAIARNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVSAERGEPLGET 329 (913)
Q Consensus 250 P~~~~q~~il~~i~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv~~~~~~~~g~~ 329 (913)
..+++|.++++.+.+++++++++|||||||+++.+++++.+... +.+.+|++.|||+||.|+.+.+.... ..+..
T Consensus 36 ~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~---~~~~aL~l~PtraLa~q~~~~l~~l~--~~~i~ 110 (742)
T TIGR03817 36 RPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADD---PRATALYLAPTKALAADQLRAVRELT--LRGVR 110 (742)
T ss_pred cCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhC---CCcEEEEEcChHHHHHHHHHHHHHhc--cCCeE
Confidence 45788999999999999999999999999999999999988653 23466666699999999999997753 11222
Q ss_pred eee----EEecc-ccCCCCceEEEEecHHHHHHHhcCC-----CCCCceEEEecccccc-Ccch---HHHHHHHHHhCcc
Q 002521 330 VGY----KVRLE-GMKGKNTHLLFCTSGILLRRLLSDH-----NLNGVTHVFVDEIHER-GMNE---DFLLIVLKDLLPR 395 (913)
Q Consensus 330 vGy----~v~~e-~~~~~~~~Ivv~T~g~Ll~~l~~~~-----~L~~~s~IIIDEaHer-~~~~---d~ll~llk~ll~~ 395 (913)
++. ....+ .....+++|+|+||++|...+.... .++++++|||||||.. +... ..++..++.+...
T Consensus 111 v~~~~Gdt~~~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~g~fg~~~~~il~rL~ri~~~ 190 (742)
T TIGR03817 111 PATYDGDTPTEERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYRGVFGSHVALVLRRLRRLCAR 190 (742)
T ss_pred EEEEeCCCCHHHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhccCccHHHHHHHHHHHHHHHHh
Confidence 211 10000 1112457999999999976443221 4889999999999963 3222 2223333333322
Q ss_pred -CccceEEEecccc-CHHHHHhhhCCCCeeccCCccccc---eeeehhhH-HhhhcccccccccccchhhhhHHHHhhhh
Q 002521 396 -RRDLRLILMSATL-NAELFSNYFGGAPTIHIPGFTYPV---QAHFLEDV-LEMTGYKLTSLNQVDDYGQEKLWKTQRQL 469 (913)
Q Consensus 396 -~~~~kiIlmSATl-~~~~~~~yf~~~~~i~i~g~~~pv---~~~yl~di-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (913)
..+.|+|++|||+ ++..+.+.+.+.++..+....-|. ...+.... ....+ . ..
T Consensus 191 ~g~~~q~i~~SATi~n~~~~~~~l~g~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~----------~-----------~~ 249 (742)
T TIGR03817 191 YGASPVFVLASATTADPAAAASRLIGAPVVAVTEDGSPRGARTVALWEPPLTELTG----------E-----------NG 249 (742)
T ss_pred cCCCCEEEEEecCCCCHHHHHHHHcCCCeEEECCCCCCcCceEEEEecCCcccccc----------c-----------cc
Confidence 2457999999999 455555554444444443221111 11111100 00000 0 00
Q ss_pred chhhhhhhHHHHHHHHHhhccccccchhhhhhhccccccccchhhHHHHHHHHhhhcCCCcEEEEcCChHHHHHHHHHHH
Q 002521 470 LPRKRKNQITALVEDALHKSNFENYSSRARDSLASWTADCIGFNLIEAVLCHICRKECPGAVLVFMTGWEDISCLRDQLK 549 (913)
Q Consensus 470 ~~~~~~~~i~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~li~~ll~~i~~~~~~g~iLVF~~~~~~i~~l~~~L~ 549 (913)
. ..+ .........++..+.. .+.++||||++++.++.++..|.
T Consensus 250 ~-~~r----------------------------------~~~~~~~~~~l~~l~~--~~~~~IVF~~sr~~ae~l~~~l~ 292 (742)
T TIGR03817 250 A-PVR----------------------------------RSASAEAADLLADLVA--EGARTLTFVRSRRGAELVAAIAR 292 (742)
T ss_pred c-ccc----------------------------------cchHHHHHHHHHHHHH--CCCCEEEEcCCHHHHHHHHHHHH
Confidence 0 000 0000011223333333 25689999999999999999886
Q ss_pred cCCC-CCCCCCeEEEEecCCCChHHHHHHhccCCCCccEEEEecchhhhcCCCCCeEEEEeCCCCcceeecCCCCCCcCC
Q 002521 550 SHPL-LGDPNRVLLLTCHGSMPTSEQKFIFEKAPPNIRKIVLATNMAEASITINDIVFVVDCGKAKETTYDALNNTPCLL 628 (913)
Q Consensus 550 ~~~~-~~~~~~~~v~~lHs~l~~~er~~v~~~f~~g~~kVLVATniae~GIdIp~v~~VId~g~~k~~~yd~~~~~~~l~ 628 (913)
.... .....+..+..+||++++++|+.+++.|++|++++|||||++|+|||||++++||++|.|.
T Consensus 293 ~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f~~G~i~vLVaTd~lerGIDI~~vd~VI~~~~P~-------------- 358 (742)
T TIGR03817 293 RLLGEVDPDLAERVAAYRAGYLPEDRRELERALRDGELLGVATTNALELGVDISGLDAVVIAGFPG-------------- 358 (742)
T ss_pred HHHHhhccccccchhheecCCCHHHHHHHHHHHHcCCceEEEECchHhccCCcccccEEEEeCCCC--------------
Confidence 5310 0111245688999999999999999999999999999999999999999999999988776
Q ss_pred ccccCHhhHHHHhcccCCC-CCcEEEEecCh
Q 002521 629 PSWISQASARQRRGRAGRV-QPGQCYHLYPR 658 (913)
Q Consensus 629 ~~~iSka~~~QR~GRAGR~-~~G~c~~L~t~ 658 (913)
|.++|+||+|||||. +.|.++.+.+.
T Consensus 359 ----s~~~y~qRiGRaGR~G~~g~ai~v~~~ 385 (742)
T TIGR03817 359 ----TRASLWQQAGRAGRRGQGALVVLVARD 385 (742)
T ss_pred ----CHHHHHHhccccCCCCCCcEEEEEeCC
Confidence 777999999999999 67999988763
No 32
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=1.4e-35 Score=322.36 Aligned_cols=319 Identities=17% Similarity=0.181 Sum_probs=230.9
Q ss_pred cCCCcHHHHHHHHHHHHcCCeEEEEcCCCchHHhHHHHHHHHHHHHhCCC--CceEEEEcchhHHHHHHHHHHHHHHhCC
Q 002521 247 KSLPSFKEKERLLQAIARNQVIVISGETGCGKTTQLPQYILESEIESGRG--AFCNIICTQPRRISAMAVSERVSAERGE 324 (913)
Q Consensus 247 ~~lP~~~~q~~il~~i~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~--~~~~Ilv~qPrr~La~qva~rv~~~~~~ 324 (913)
.-.-+...|+..+..+..++++++.|-||||||+++++++.+.++..... ....++++.|||+||+|++....+.+..
T Consensus 101 GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi~PTRELA~Q~~~eak~Ll~~ 180 (543)
T KOG0342|consen 101 GFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLIICPTRELAMQIFAEAKELLKY 180 (543)
T ss_pred CccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEEecccHHHHHHHHHHHHHHHhh
Confidence 33456778999999999999999999999999999999999998764321 2233444459999999999888877665
Q ss_pred CcccEeeeEEecccc------CCCCceEEEEecHHHHHHHhcCC--CCCCceEEEecccc---ccCcchHHHHHHHHHhC
Q 002521 325 PLGETVGYKVRLEGM------KGKNTHLLFCTSGILLRRLLSDH--NLNGVTHVFVDEIH---ERGMNEDFLLIVLKDLL 393 (913)
Q Consensus 325 ~~g~~vGy~v~~e~~------~~~~~~Ivv~T~g~Ll~~l~~~~--~L~~~s~IIIDEaH---er~~~~d~ll~llk~ll 393 (913)
.-+..+|+-+...+. ....++|+|+|||+|++++++.+ ...++.++|+|||+ ++|+..|+..++ .++
T Consensus 181 h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDEADrlLd~GF~~di~~Ii--~~l 258 (543)
T KOG0342|consen 181 HESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEADRLLDIGFEEDVEQII--KIL 258 (543)
T ss_pred CCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeEeecchhhhhcccHHHHHHHH--Hhc
Confidence 545556655544322 22478999999999999998876 56777999999999 467777766555 455
Q ss_pred ccCccceEEEeccccCHH--HHHhh-hCC-CCeeccCCccccceeeehhhHHhhhcccccccccccchhhhhHHHHhhhh
Q 002521 394 PRRRDLRLILMSATLNAE--LFSNY-FGG-APTIHIPGFTYPVQAHFLEDVLEMTGYKLTSLNQVDDYGQEKLWKTQRQL 469 (913)
Q Consensus 394 ~~~~~~kiIlmSATl~~~--~~~~y-f~~-~~~i~i~g~~~pv~~~yl~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (913)
+ ...|.+++|||.+.+ .++.- +.. +..+.+...
T Consensus 259 p--k~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~----------------------------------------- 295 (543)
T KOG0342|consen 259 P--KQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDG----------------------------------------- 295 (543)
T ss_pred c--ccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCC-----------------------------------------
Confidence 5 445899999999765 22211 111 111111000
Q ss_pred chhhhhhhHHHHHHHHHhhccccccchhhhhhhccccccccchhhHHHHHHHHhhh-cCCCcEEEEcCChHHHHHHHHHH
Q 002521 470 LPRKRKNQITALVEDALHKSNFENYSSRARDSLASWTADCIGFNLIEAVLCHICRK-ECPGAVLVFMTGWEDISCLRDQL 548 (913)
Q Consensus 470 ~~~~~~~~i~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~li~~ll~~i~~~-~~~g~iLVF~~~~~~i~~l~~~L 548 (913)
-...+.+.+++...-...... ..++..+++. ....+|+|||+|...+..+++.|
T Consensus 296 ------------------------~~~~The~l~Qgyvv~~~~~~-f~ll~~~LKk~~~~~KiiVF~sT~~~vk~~~~lL 350 (543)
T KOG0342|consen 296 ------------------------GERETHERLEQGYVVAPSDSR-FSLLYTFLKKNIKRYKIIVFFSTCMSVKFHAELL 350 (543)
T ss_pred ------------------------CCcchhhcccceEEeccccch-HHHHHHHHHHhcCCceEEEEechhhHHHHHHHHH
Confidence 001111122221111111111 1122333333 33378999999999999999999
Q ss_pred HcCCCCCCCCCeEEEEecCCCChHHHHHHhccCCCCccEEEEecchhhhcCCCCCeEEEEeCCCCcceeecCCCCCCcCC
Q 002521 549 KSHPLLGDPNRVLLLTCHGSMPTSEQKFIFEKAPPNIRKIVLATNMAEASITINDIVFVVDCGKAKETTYDALNNTPCLL 628 (913)
Q Consensus 549 ~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~g~~kVLVATniae~GIdIp~v~~VId~g~~k~~~yd~~~~~~~l~ 628 (913)
... .+.|..+||++++..|..++..|.+.+.-|||||||+++|+|+|+|++||.+|.|.
T Consensus 351 ~~~-------dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~P~V~~VvQ~~~P~-------------- 409 (543)
T KOG0342|consen 351 NYI-------DLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGLDIPDVDWVVQYDPPS-------------- 409 (543)
T ss_pred hhc-------CCchhhhhcCCcccccchHHHHHhhcccceEEecchhhccCCCCCceEEEEeCCCC--------------
Confidence 965 77899999999999999999999999999999999999999999999999977776
Q ss_pred ccccCHhhHHHHhcccCCC-CCcEEEEecChhh
Q 002521 629 PSWISQASARQRRGRAGRV-QPGQCYHLYPRCV 660 (913)
Q Consensus 629 ~~~iSka~~~QR~GRAGR~-~~G~c~~L~t~~~ 660 (913)
...+|+||+||+||. +.|+.+.+..+.+
T Consensus 410 ----d~~~YIHRvGRTaR~gk~G~alL~l~p~E 438 (543)
T KOG0342|consen 410 ----DPEQYIHRVGRTAREGKEGKALLLLAPWE 438 (543)
T ss_pred ----CHHHHHHHhccccccCCCceEEEEeChhH
Confidence 445999999999998 7899999877654
No 33
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=6.8e-35 Score=319.90 Aligned_cols=459 Identities=20% Similarity=0.250 Sum_probs=316.2
Q ss_pred hcCchhhhHHhhhcCCCcHHHHHHHH-HHHHcCCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHH
Q 002521 234 QESPEGNKMLDFRKSLPSFKEKERLL-QAIARNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAM 312 (913)
Q Consensus 234 ~~~~~~~~l~~~r~~lP~~~~q~~il-~~i~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~ 312 (913)
+-.++++.+++.+..--+.+.|.-.+ .-+.++.+.+|+.+|+||||++..++=+..++..+ .+.++++|..+||+
T Consensus 200 dipe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~~g----~KmlfLvPLVALAN 275 (830)
T COG1202 200 DIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLSGG----KKMLFLVPLVALAN 275 (830)
T ss_pred CCcHHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHhCC----CeEEEEehhHHhhc
Confidence 34556677777664433333354444 44789999999999999999999888777665422 36777779999999
Q ss_pred HHHHHHHHHhCCCcccEeeeEEecc----------ccCCCCceEEEEecHHHHHHHhcCCCCCCceEEEecccc-----c
Q 002521 313 AVSERVSAERGEPLGETVGYKVRLE----------GMKGKNTHLLFCTSGILLRRLLSDHNLNGVTHVFVDEIH-----E 377 (913)
Q Consensus 313 qva~rv~~~~~~~~g~~vGy~v~~e----------~~~~~~~~Ivv~T~g~Ll~~l~~~~~L~~~s~IIIDEaH-----e 377 (913)
|.++.|.... .++|..+...+... ...+.+.+|+|+|.+-+-.+|.....+.+++.|||||+| |
T Consensus 276 QKy~dF~~rY-s~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg~~lgdiGtVVIDEiHtL~deE 354 (830)
T COG1202 276 QKYEDFKERY-SKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTGKDLGDIGTVVIDEIHTLEDEE 354 (830)
T ss_pred chHHHHHHHh-hcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcCCcccccceEEeeeeeeccchh
Confidence 9999997765 44554444333221 223457899999999888888888899999999999999 7
Q ss_pred cCcchHHHHHHHHHhCccCccceEEEecccc-CHHHHHhhhCCCCeeccCCccccceeeehhhHHhhhcccccccccccc
Q 002521 378 RGMNEDFLLIVLKDLLPRRRDLRLILMSATL-NAELFSNYFGGAPTIHIPGFTYPVQAHFLEDVLEMTGYKLTSLNQVDD 456 (913)
Q Consensus 378 r~~~~d~ll~llk~ll~~~~~~kiIlmSATl-~~~~~~~yf~~~~~i~i~g~~~pv~~~yl~di~~~~~~~~~~~~~~~~ 456 (913)
||...|-+...++.+.+ +.|+|.+|||+ |++.++.+++ ...+...+|+.|++.|.+-.-
T Consensus 355 RG~RLdGLI~RLr~l~~---~AQ~i~LSATVgNp~elA~~l~-a~lV~y~~RPVplErHlvf~~---------------- 414 (830)
T COG1202 355 RGPRLDGLIGRLRYLFP---GAQFIYLSATVGNPEELAKKLG-AKLVLYDERPVPLERHLVFAR---------------- 414 (830)
T ss_pred cccchhhHHHHHHHhCC---CCeEEEEEeecCChHHHHHHhC-CeeEeecCCCCChhHeeeeec----------------
Confidence 89998888777776655 77999999999 8999999996 455666778888876653100
Q ss_pred hhhhhHHHHhhhhchhhhhhhHHHHHHHHHhhccccccchhhhhhhccccccccchhhHHHHHHHHhhhcCCCcEEEEcC
Q 002521 457 YGQEKLWKTQRQLLPRKRKNQITALVEDALHKSNFENYSSRARDSLASWTADCIGFNLIEAVLCHICRKECPGAVLVFMT 536 (913)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~i~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~li~~ll~~i~~~~~~g~iLVF~~ 536 (913)
....-|+ -+..+++.... ...+..-.|.+|||++
T Consensus 415 -~e~eK~~------------ii~~L~k~E~~---------------------------------~~sskg~rGQtIVFT~ 448 (830)
T COG1202 415 -NESEKWD------------IIARLVKREFS---------------------------------TESSKGYRGQTIVFTY 448 (830)
T ss_pred -CchHHHH------------HHHHHHHHHHh---------------------------------hhhccCcCCceEEEec
Confidence 0000111 11122221111 1112334689999999
Q ss_pred ChHHHHHHHHHHHcCCCCCCCCCeEEEEecCCCChHHHHHHhccCCCCccEEEEecchhhhcCCCCCeEEEEeCCCCcce
Q 002521 537 GWEDISCLRDQLKSHPLLGDPNRVLLLTCHGSMPTSEQKFIFEKAPPNIRKIVLATNMAEASITINDIVFVVDCGKAKET 616 (913)
Q Consensus 537 ~~~~i~~l~~~L~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~g~~kVLVATniae~GIdIp~v~~VId~g~~k~~ 616 (913)
++..|..+++.|... ++.+.++|+||+..+|+.+...|.++.+.++|+|..++.|+|+|.-.+|..+
T Consensus 449 SRrr~h~lA~~L~~k-------G~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTAAL~AGVDFPASQVIFEs------ 515 (830)
T COG1202 449 SRRRCHELADALTGK-------GLKAAPYHAGLPYKERKSVERAFAAQELAAVVTTAALAAGVDFPASQVIFES------ 515 (830)
T ss_pred chhhHHHHHHHhhcC-------CcccccccCCCcHHHHHHHHHHHhcCCcceEeehhhhhcCCCCchHHHHHHH------
Confidence 999999999999986 8889999999999999999999999999999999999999999987776541
Q ss_pred eecCCCCCCcCCccccCHhhHHHHhcccCCC---CCcEEEEecChh-hHHh-hhh----------CCCCccccc------
Q 002521 617 TYDALNNTPCLLPSWISQASARQRRGRAGRV---QPGQCYHLYPRC-VYEA-FAE----------YQLPELLRT------ 675 (913)
Q Consensus 617 ~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~---~~G~c~~L~t~~-~~~~-l~~----------~~~pEi~r~------ 675 (913)
-.+-..|+|..+|.||.|||||. ..|++|.|.... .|.. |.+ ...||-...
T Consensus 516 --------LaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg~~Y~~~m~~TEdevA~kLL~s~~e~V~vey~ee~ 587 (830)
T COG1202 516 --------LAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPGKKYHASMEETEDEVAFKLLESEPEPVIVEYDEED 587 (830)
T ss_pred --------HHcccccCCHHHHHHHhcccCCCCcccCceEEEEecCChhhcccccccHHHHHHHHhcCCCCcceeccCcHH
Confidence 12346899999999999999998 579999995432 2221 111 111221111
Q ss_pred ChhhHHHHHhhcCCCCHHHHHHhccCCC--chHHHHHHHHHHHHcCCCCCCC---CcccccccccccCCChHHHHHHHHh
Q 002521 676 PLNSLCLQIKSLQVGSIGEFLSAALQPP--EPLAVQNAVDFLKRIGALDEKE---NLTNLGKFLSMLPVDPKLGKMLVMG 750 (913)
Q Consensus 676 ~L~~~~L~lk~l~~~~~~~fl~~~l~pP--~~~~i~~al~~L~~~gald~~~---~lT~lG~~ls~lpl~p~~~k~ll~~ 750 (913)
.+++++. +.+..+-...+...-+-+ ..-....++..|+++|+|+.+| ++|+.|++++..-+.|..+-.|..+
T Consensus 588 e~e~vLA---~~~v~~s~~~i~~v~~~~~g~~~~~~k~l~~Lee~g~i~~~G~~v~~T~yGrava~~Fl~p~~a~~Ir~~ 664 (830)
T COG1202 588 EEENVLA---SAGVTNSLSVIERVNSLMLGAAFDPKKALSKLEEYGMIKKKGNIVRPTPYGRAVAMSFLGPSEAEFIREG 664 (830)
T ss_pred HHHHHHH---HhhhcCcHHHHhhcChhhccccCCHHHHHHHHHhcCCeeccCCEeeeccccceeEEeecCchHHHHHHHh
Confidence 1222222 222221111111111000 1124678999999999999776 6999999999999999999888776
Q ss_pred hhccChHHHHHHHhhc-cCCCCCcCChhhHHHHHHHhccc
Q 002521 751 AIFRCFDPVLTIVSGL-SVRDPFLLPQEKKNLAEIAKSRF 789 (913)
Q Consensus 751 ~~~~cl~~~l~i~a~l-s~~~~f~~p~~~~~~~~~~~~~~ 789 (913)
. ..-.+|. .|++.| -..+.++.++-++......+..+
T Consensus 665 v-~~~~~pl-~i~~~l~pfE~ayls~~l~r~i~~~~~~~v 702 (830)
T COG1202 665 V-LASMDPL-RIAAELEPFENAYLSGFLKRAIESALRGRV 702 (830)
T ss_pred h-hccCChH-hHhhccccccccccChHHHHHHHHHhcCCC
Confidence 5 4555655 455544 34455555554555444444444
No 34
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.3e-35 Score=321.85 Aligned_cols=336 Identities=19% Similarity=0.226 Sum_probs=235.4
Q ss_pred cCchhhhHHhhhcCCCcHHHHHHHHHHHHcCCeEEEEcCCCchHHhHHHHHHHHHHHHhCCC-CceEEEEcchhHHHHHH
Q 002521 235 ESPEGNKMLDFRKSLPSFKEKERLLQAIARNQVIVISGETGCGKTTQLPQYILESEIESGRG-AFCNIICTQPRRISAMA 313 (913)
Q Consensus 235 ~~~~~~~l~~~r~~lP~~~~q~~il~~i~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~-~~~~Ilv~qPrr~La~q 313 (913)
..|.++.+-...+.-|... |.+.++..+-+++++.+|.||||||.++.+|+++.++-..++ +..+|+|++|||+||+|
T Consensus 189 SRPlLka~~~lGy~~PTpI-Q~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL~PTRELaiQ 267 (691)
T KOG0338|consen 189 SRPLLKACSTLGYKKPTPI-QVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKKVAATRVLVLVPTRELAIQ 267 (691)
T ss_pred chHHHHHHHhcCCCCCCch-hhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCcccCcceeEEEEeccHHHHHH
Confidence 3455555555555556544 666777777899999999999999999999999998866543 44688888899999999
Q ss_pred HHHHHH---HHhCCCcccEee-eEEe-ccccCCCCceEEEEecHHHHHHHhcCC--CCCCceEEEeccccccCcchHHHH
Q 002521 314 VSERVS---AERGEPLGETVG-YKVR-LEGMKGKNTHLLFCTSGILLRRLLSDH--NLNGVTHVFVDEIHERGMNEDFLL 386 (913)
Q Consensus 314 va~rv~---~~~~~~~g~~vG-y~v~-~e~~~~~~~~Ivv~T~g~Ll~~l~~~~--~L~~~s~IIIDEaHer~~~~d~ll 386 (913)
++.... .+....+|..|| ..++ .+......++|+|+|||+|.++|.+.+ .++++.++|+|||+ |-+...|-.
T Consensus 268 v~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEAD-RMLeegFad 346 (691)
T KOG0338|consen 268 VHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEAD-RMLEEGFAD 346 (691)
T ss_pred HHHHHHHHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEechHH-HHHHHHHHH
Confidence 876554 444555555554 2222 123334678999999999999999887 78999999999999 434444433
Q ss_pred HHHHHhCc-cCccceEEEeccccCHH--HHHhhhCCCCeeccCCccccceeeehhhHHhhhcccccccccccchhhhhHH
Q 002521 387 IVLKDLLP-RRRDLRLILMSATLNAE--LFSNYFGGAPTIHIPGFTYPVQAHFLEDVLEMTGYKLTSLNQVDDYGQEKLW 463 (913)
Q Consensus 387 ~llk~ll~-~~~~~kiIlmSATl~~~--~~~~yf~~~~~i~i~g~~~pv~~~yl~di~~~~~~~~~~~~~~~~~~~~~~~ 463 (913)
.+ ..++. ...+.|.+++||||+.+ .+.+.--+ .||.++.-+.. .
T Consensus 347 em-nEii~lcpk~RQTmLFSATMteeVkdL~slSL~----------kPvrifvd~~~------------~---------- 393 (691)
T KOG0338|consen 347 EM-NEIIRLCPKNRQTMLFSATMTEEVKDLASLSLN----------KPVRIFVDPNK------------D---------- 393 (691)
T ss_pred HH-HHHHHhccccccceeehhhhHHHHHHHHHhhcC----------CCeEEEeCCcc------------c----------
Confidence 32 22222 22345899999999654 33332212 12222211000 0
Q ss_pred HHhhhhchhhhhhhHHHHHHHHHhhccccccchhhhhhhccccccccchhhHHHHHHHHhhhcCCCcEEEEcCChHHHHH
Q 002521 464 KTQRQLLPRKRKNQITALVEDALHKSNFENYSSRARDSLASWTADCIGFNLIEAVLCHICRKECPGAVLVFMTGWEDISC 543 (913)
Q Consensus 464 ~~~~~~~~~~~~~~i~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~li~~ll~~i~~~~~~g~iLVF~~~~~~i~~ 543 (913)
. ...+-++.+..- + -.-.+.+.++..++...-...++||+.+++.+.+
T Consensus 394 -----~--------a~~LtQEFiRIR-----------------~--~re~dRea~l~~l~~rtf~~~~ivFv~tKk~AHR 441 (691)
T KOG0338|consen 394 -----T--------APKLTQEFIRIR-----------------P--KREGDREAMLASLITRTFQDRTIVFVRTKKQAHR 441 (691)
T ss_pred -----c--------chhhhHHHheec-----------------c--ccccccHHHHHHHHHHhcccceEEEEehHHHHHH
Confidence 0 000000011000 0 0001123344444444446679999999999999
Q ss_pred HHHHHHcCCCCCCCCCeEEEEecCCCChHHHHHHhccCCCCccEEEEecchhhhcCCCCCeEEEEeCCCCcceeecCCCC
Q 002521 544 LRDQLKSHPLLGDPNRVLLLTCHGSMPTSEQKFIFEKAPPNIRKIVLATNMAEASITINDIVFVVDCGKAKETTYDALNN 623 (913)
Q Consensus 544 l~~~L~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~g~~kVLVATniae~GIdIp~v~~VId~g~~k~~~yd~~~~ 623 (913)
+.-+|--. ++.+.-+||+|++.+|...++.|+++.+.||||||+|++|+||++|..|||+..|+
T Consensus 442 l~IllGLl-------gl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV~tVINy~mP~--------- 505 (691)
T KOG0338|consen 442 LRILLGLL-------GLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGVQTVINYAMPK--------- 505 (691)
T ss_pred HHHHHHHh-------hchhhhhcccccHHHHHHHHHHHHhccCCEEEEechhhccCCccceeEEEeccCch---------
Confidence 98777654 77889999999999999999999999999999999999999999999999966665
Q ss_pred CCcCCccccCHhhHHHHhcccCCC-CCcEEEEecChhhHH
Q 002521 624 TPCLLPSWISQASARQRRGRAGRV-QPGQCYHLYPRCVYE 662 (913)
Q Consensus 624 ~~~l~~~~iSka~~~QR~GRAGR~-~~G~c~~L~t~~~~~ 662 (913)
|...|+||+||+.|. +.|..+.|..+.+-.
T Consensus 506 ---------t~e~Y~HRVGRTARAGRaGrsVtlvgE~dRk 536 (691)
T KOG0338|consen 506 ---------TIEHYLHRVGRTARAGRAGRSVTLVGESDRK 536 (691)
T ss_pred ---------hHHHHHHHhhhhhhcccCcceEEEeccccHH
Confidence 666899999999999 789999999887544
No 35
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.6e-35 Score=315.26 Aligned_cols=328 Identities=19% Similarity=0.241 Sum_probs=228.8
Q ss_pred cHHHHHHHHHHHHcCCeEEEEcCCCchHHhHHHHHHHHHHHHhC-C--CCceEEEEcchhHHHHHHHHHHHHHHhCC---
Q 002521 251 SFKEKERLLQAIARNQVIVISGETGCGKTTQLPQYILESEIESG-R--GAFCNIICTQPRRISAMAVSERVSAERGE--- 324 (913)
Q Consensus 251 ~~~~q~~il~~i~~~~~vII~apTGSGKTt~~~~~ile~~~~~~-~--~~~~~Ilv~qPrr~La~qva~rv~~~~~~--- 324 (913)
..+.|...++.+..+++|++.++||||||+++.+|+++-+.... + ....-.+++.|||+||.|+.+.+......
T Consensus 29 mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalIIsPTRELa~QI~~V~~~F~~~l~~ 108 (567)
T KOG0345|consen 29 MTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALIISPTRELARQIREVAQPFLEHLPN 108 (567)
T ss_pred cCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEEecCcHHHHHHHHHHHHHHHHhhhc
Confidence 35669999999999999999999999999999999999885432 2 22335667779999999998776554322
Q ss_pred -CcccEeeeE-Ee--ccccCCCCceEEEEecHHHHHHHhcCC---CCCCceEEEecccc---ccCcchHHHHHHHHHhCc
Q 002521 325 -PLGETVGYK-VR--LEGMKGKNTHLLFCTSGILLRRLLSDH---NLNGVTHVFVDEIH---ERGMNEDFLLIVLKDLLP 394 (913)
Q Consensus 325 -~~g~~vGy~-v~--~e~~~~~~~~Ivv~T~g~Ll~~l~~~~---~L~~~s~IIIDEaH---er~~~~d~ll~llk~ll~ 394 (913)
...-.||-. +. .......++.|+|+|||+|+++++... .+.+++++|+|||| ++|+...+-.++ ..++
T Consensus 109 l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVLDEADrLldmgFe~~~n~IL--s~LP 186 (567)
T KOG0345|consen 109 LNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVLDEADRLLDMGFEASVNTIL--SFLP 186 (567)
T ss_pred cceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEecchHhHhcccHHHHHHHHH--Hhcc
Confidence 222233321 11 122334678999999999999998743 45599999999999 344444332222 2233
Q ss_pred cCccceEEEeccccCHH--HHH-hhhCCCCeeccCCcc---cc--ceeeehhhHHhhhcccccccccccchhhhhHHHHh
Q 002521 395 RRRDLRLILMSATLNAE--LFS-NYFGGAPTIHIPGFT---YP--VQAHFLEDVLEMTGYKLTSLNQVDDYGQEKLWKTQ 466 (913)
Q Consensus 395 ~~~~~kiIlmSATl~~~--~~~-~yf~~~~~i~i~g~~---~p--v~~~yl~di~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (913)
...++=++|||.+.+ ++. ..+.++..+.+.... -| +..+|
T Consensus 187 --KQRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y------------------------------ 234 (567)
T KOG0345|consen 187 --KQRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEY------------------------------ 234 (567)
T ss_pred --cccccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhccee------------------------------
Confidence 234788999998543 332 223333333332211 11 11111
Q ss_pred hhhchhhhhhhHHHHHHHHHhhccccccchhhhhhhccccccccchhhHHHHHHHHhhhcCCCcEEEEcCChHHHHHHHH
Q 002521 467 RQLLPRKRKNQITALVEDALHKSNFENYSSRARDSLASWTADCIGFNLIEAVLCHICRKECPGAVLVFMTGWEDISCLRD 546 (913)
Q Consensus 467 ~~~~~~~~~~~i~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~li~~ll~~i~~~~~~g~iLVF~~~~~~i~~l~~ 546 (913)
-.+..+.+...+.+++.+...+++|||.+|-..++....
T Consensus 235 -----------------------------------------~v~~a~eK~~~lv~~L~~~~~kK~iVFF~TCasVeYf~~ 273 (567)
T KOG0345|consen 235 -----------------------------------------LVCEADEKLSQLVHLLNNNKDKKCIVFFPTCASVEYFGK 273 (567)
T ss_pred -----------------------------------------eEecHHHHHHHHHHHHhccccccEEEEecCcchHHHHHH
Confidence 122233344556677777778999999999999999888
Q ss_pred HHHcCCCCCCCCCeEEEEecCCCChHHHHHHhccCCCCccEEEEecchhhhcCCCCCeEEEEeCCCCcceeecCCCCCCc
Q 002521 547 QLKSHPLLGDPNRVLLLTCHGSMPTSEQKFIFEKAPPNIRKIVLATNMAEASITINDIVFVVDCGKAKETTYDALNNTPC 626 (913)
Q Consensus 547 ~L~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~g~~kVLVATniae~GIdIp~v~~VId~g~~k~~~yd~~~~~~~ 626 (913)
.+... .....++.+||.|.+.+|.++++.|......+++|||||++|||||+|++||+++.| ...+
T Consensus 274 ~~~~~-----l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGlDip~iD~VvQ~DpP--------~~~~- 339 (567)
T KOG0345|consen 274 LFSRL-----LKKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARGLDIPGIDLVVQFDPP--------KDPS- 339 (567)
T ss_pred HHHHH-----hCCCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhccCCCCCceEEEecCCC--------CChh-
Confidence 88764 136779999999999999999999999888999999999999999999999994444 4433
Q ss_pred CCccccCHhhHHHHhcccCCC-CCcEEEEec--ChhhHHhhhh-CCCCcccccC
Q 002521 627 LLPSWISQASARQRRGRAGRV-QPGQCYHLY--PRCVYEAFAE-YQLPELLRTP 676 (913)
Q Consensus 627 l~~~~iSka~~~QR~GRAGR~-~~G~c~~L~--t~~~~~~l~~-~~~pEi~r~~ 676 (913)
+|.||+||+||. +.|.++.+. .+..|..|.. ...|++-+..
T Consensus 340 ---------~FvHR~GRTaR~gr~G~Aivfl~p~E~aYveFl~i~~~v~le~~~ 384 (567)
T KOG0345|consen 340 ---------SFVHRCGRTARAGREGNAIVFLNPREEAYVEFLRIKGKVELERID 384 (567)
T ss_pred ---------HHHhhcchhhhccCccceEEEecccHHHHHHHHHhcCccchhhhc
Confidence 667999999999 677766654 4556666544 4457655543
No 36
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=2.9e-34 Score=335.15 Aligned_cols=308 Identities=20% Similarity=0.209 Sum_probs=211.4
Q ss_pred HHHHHHHHHHHHcCCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHHHHHhCCCcccEee
Q 002521 252 FKEKERLLQAIARNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVSAERGEPLGETVG 331 (913)
Q Consensus 252 ~~~q~~il~~i~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv~~~~~~~~g~~vG 331 (913)
.+.|.++++++..++++++++|||||||+++.++++.. +. ..+|+.|+++|+.|+.+++.. .|.......|
T Consensus 13 r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~------~~--~~lVi~P~~~L~~dq~~~l~~-~gi~~~~l~~ 83 (470)
T TIGR00614 13 RPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCS------DG--ITLVISPLISLMEDQVLQLKA-SGIPATFLNS 83 (470)
T ss_pred CHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHc------CC--cEEEEecHHHHHHHHHHHHHH-cCCcEEEEeC
Confidence 45799999999999999999999999999998887641 22 345556999999999888864 3332211111
Q ss_pred eEEe------ccccCCCCceEEEEecHHHHHHH--hcCC-CCCCceEEEeccccccCc-chHHHH--HHHHHhCccCccc
Q 002521 332 YKVR------LEGMKGKNTHLLFCTSGILLRRL--LSDH-NLNGVTHVFVDEIHERGM-NEDFLL--IVLKDLLPRRRDL 399 (913)
Q Consensus 332 y~v~------~e~~~~~~~~Ivv~T~g~Ll~~l--~~~~-~L~~~s~IIIDEaHer~~-~~d~ll--~llk~ll~~~~~~ 399 (913)
.... .........+|+|+||+.+.... .... ...++++|||||||..+- ..++.. ..+..+....++.
T Consensus 84 ~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~ 163 (470)
T TIGR00614 84 SQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPDYKALGSLKQKFPNV 163 (470)
T ss_pred CCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHHHHHHHHHHHHcCCC
Confidence 1100 01123355799999999875321 1111 467899999999996431 112211 1122333345678
Q ss_pred eEEEeccccCHH---HHHhhhC-CCCeeccCCccccceeeehhhHHhhhcccccccccccchhhhhHHHHhhhhchhhhh
Q 002521 400 RLILMSATLNAE---LFSNYFG-GAPTIHIPGFTYPVQAHFLEDVLEMTGYKLTSLNQVDDYGQEKLWKTQRQLLPRKRK 475 (913)
Q Consensus 400 kiIlmSATl~~~---~~~~yf~-~~~~i~i~g~~~pv~~~yl~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (913)
++++||||++.. ++..+++ ..+.+...+...|. .+|.- . ..
T Consensus 164 ~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s~~r~n-l~~~v----------~----------------------~~-- 208 (470)
T TIGR00614 164 PIMALTATASPSVREDILRQLNLKNPQIFCTSFDRPN-LYYEV----------R----------------------RK-- 208 (470)
T ss_pred ceEEEecCCCHHHHHHHHHHcCCCCCcEEeCCCCCCC-cEEEE----------E----------------------eC--
Confidence 999999999765 3334443 12222211111110 00000 0 00
Q ss_pred hhHHHHHHHHHhhccccccchhhhhhhccccccccchhhHHHHHHHHhhhcCCCcEEEEcCChHHHHHHHHHHHcCCCCC
Q 002521 476 NQITALVEDALHKSNFENYSSRARDSLASWTADCIGFNLIEAVLCHICRKECPGAVLVFMTGWEDISCLRDQLKSHPLLG 555 (913)
Q Consensus 476 ~~i~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~li~~ll~~i~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~~ 555 (913)
..+....++..+.....+..+||||+++++++.+++.|...
T Consensus 209 -----------------------------------~~~~~~~l~~~l~~~~~~~~~IIF~~s~~~~e~la~~L~~~---- 249 (470)
T TIGR00614 209 -----------------------------------TPKILEDLLRFIRKEFKGKSGIIYCPSRKKSEQVTASLQNL---- 249 (470)
T ss_pred -----------------------------------CccHHHHHHHHHHHhcCCCceEEEECcHHHHHHHHHHHHhc----
Confidence 00011122222222334556799999999999999999876
Q ss_pred CCCCeEEEEecCCCChHHHHHHhccCCCCccEEEEecchhhhcCCCCCeEEEEeCCCCcceeecCCCCCCcCCccccCHh
Q 002521 556 DPNRVLLLTCHGSMPTSEQKFIFEKAPPNIRKIVLATNMAEASITINDIVFVVDCGKAKETTYDALNNTPCLLPSWISQA 635 (913)
Q Consensus 556 ~~~~~~v~~lHs~l~~~er~~v~~~f~~g~~kVLVATniae~GIdIp~v~~VId~g~~k~~~yd~~~~~~~l~~~~iSka 635 (913)
++.+..+||+|++++|..+++.|++|..+|||||+++++|||+|+|++||+++.|+ |.+
T Consensus 250 ---g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~~~~P~------------------s~~ 308 (470)
T TIGR00614 250 ---GIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIHYSLPK------------------SME 308 (470)
T ss_pred ---CCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEEeCCCC------------------CHH
Confidence 77899999999999999999999999999999999999999999999999988776 677
Q ss_pred hHHHHhcccCCC-CCcEEEEecChhhHHh
Q 002521 636 SARQRRGRAGRV-QPGQCYHLYPRCVYEA 663 (913)
Q Consensus 636 ~~~QR~GRAGR~-~~G~c~~L~t~~~~~~ 663 (913)
+|+||+|||||. .+|.|+.+|+..+...
T Consensus 309 ~y~Qr~GRaGR~G~~~~~~~~~~~~d~~~ 337 (470)
T TIGR00614 309 SYYQESGRAGRDGLPSECHLFYAPADINR 337 (470)
T ss_pred HHHhhhcCcCCCCCCceEEEEechhHHHH
Confidence 999999999999 6899999999876654
No 37
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.5e-35 Score=304.54 Aligned_cols=319 Identities=23% Similarity=0.354 Sum_probs=230.0
Q ss_pred hcCCCcHHHHHHHHHHHHcCCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHHHHHhCCC
Q 002521 246 RKSLPSFKEKERLLQAIARNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVSAERGEP 325 (913)
Q Consensus 246 r~~lP~~~~q~~il~~i~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv~~~~~~~ 325 (913)
+...|+ |+..+++|+.|+++|-+|.||||||+++.+++++.+-+...|..+.|+- |||+||.|++++|.. +|..
T Consensus 28 ~~pTpi---Q~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP~giFalvlT--PTrELA~QiaEQF~a-lGk~ 101 (442)
T KOG0340|consen 28 KKPTPI---QQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDPYGIFALVLT--PTRELALQIAEQFIA-LGKL 101 (442)
T ss_pred CCCCch---HhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccCCCcceEEEec--chHHHHHHHHHHHHH-hccc
Confidence 344444 8899999999999999999999999999999999997777776665555 999999999999954 4444
Q ss_pred cccEeeeEEec------cccCCCCceEEEEecHHHHHHHhcCC-----CCCCceEEEeccccccCcchHH---HHHHHHH
Q 002521 326 LGETVGYKVRL------EGMKGKNTHLLFCTSGILLRRLLSDH-----NLNGVTHVFVDEIHERGMNEDF---LLIVLKD 391 (913)
Q Consensus 326 ~g~~vGy~v~~------e~~~~~~~~Ivv~T~g~Ll~~l~~~~-----~L~~~s~IIIDEaHer~~~~d~---ll~llk~ 391 (913)
.+..+..-+.+ ....+.+++++++|||+|-..+.++. .+.++.++|+|||+ |-...+| |.....
T Consensus 102 l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDEAD-rvL~~~f~d~L~~i~e- 179 (442)
T KOG0340|consen 102 LNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDEAD-RVLAGCFPDILEGIEE- 179 (442)
T ss_pred ccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEecchh-hhhccchhhHHhhhhc-
Confidence 44444333333 23345789999999999999998773 68899999999999 4233333 333322
Q ss_pred hCccCccceEEEeccccCHHHHHhhhCCCCeeccCCccccceeeehhhHHhhhcccccccccccchhhhhHHHHhhhhch
Q 002521 392 LLPRRRDLRLILMSATLNAELFSNYFGGAPTIHIPGFTYPVQAHFLEDVLEMTGYKLTSLNQVDDYGQEKLWKTQRQLLP 471 (913)
Q Consensus 392 ll~~~~~~kiIlmSATl~~~~~~~yf~~~~~i~i~g~~~pv~~~yl~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (913)
.++ ...|.+++|||++.. +...|+ +++-.- ..|-++. .++ .
T Consensus 180 ~lP--~~RQtLlfSATitd~-i~ql~~-~~i~k~--~a~~~e~--~~~------------v------------------- 220 (442)
T KOG0340|consen 180 CLP--KPRQTLLFSATITDT-IKQLFG-CPITKS--IAFELEV--IDG------------V------------------- 220 (442)
T ss_pred cCC--CccceEEEEeehhhH-HHHhhc-CCcccc--cceEEec--cCC------------C-------------------
Confidence 222 234899999999643 333443 111100 0000000 000 0
Q ss_pred hhhhhhHHHHHHHHHhhccccccchhhhhhhccccccccchhhHHHHHHHHhhh---cCCCcEEEEcCChHHHHHHHHHH
Q 002521 472 RKRKNQITALVEDALHKSNFENYSSRARDSLASWTADCIGFNLIEAVLCHICRK---ECPGAVLVFMTGWEDISCLRDQL 548 (913)
Q Consensus 472 ~~~~~~i~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~li~~ll~~i~~~---~~~g~iLVF~~~~~~i~~l~~~L 548 (913)
.+ + +.+.. .+-.++.+.++..+.++++. +..+.++||+++..+++.++..|
T Consensus 221 -----st---v-etL~q-----------------~yI~~~~~vkdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l 274 (442)
T KOG0340|consen 221 -----ST---V-ETLYQ-----------------GYILVSIDVKDAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTL 274 (442)
T ss_pred -----Cc---h-hhhhh-----------------heeecchhhhHHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHH
Confidence 00 0 00000 00111223333444554433 35689999999999999999999
Q ss_pred HcCCCCCCCCCeEEEEecCCCChHHHHHHhccCCCCccEEEEecchhhhcCCCCCeEEEEeCCCCcceeecCCCCCCcCC
Q 002521 549 KSHPLLGDPNRVLLLTCHGSMPTSEQKFIFEKAPPNIRKIVLATNMAEASITINDIVFVVDCGKAKETTYDALNNTPCLL 628 (913)
Q Consensus 549 ~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~g~~kVLVATniae~GIdIp~v~~VId~g~~k~~~yd~~~~~~~l~ 628 (913)
... ++.+..+||.|++.+|...+.+|+++..+||||||+|++|+|||.|..|||+++|+.
T Consensus 275 ~~l-------e~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGLDIP~V~LVvN~diPr~------------- 334 (442)
T KOG0340|consen 275 KNL-------EVRVVSLHSQMPQKERLAALSRFRSNAARILIATDVASRGLDIPTVELVVNHDIPRD------------- 334 (442)
T ss_pred hhh-------ceeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhhcCCCCCceeEEEecCCCCC-------------
Confidence 986 888999999999999999999999999999999999999999999999999887773
Q ss_pred ccccCHhhHHHHhcccCCC-CCcEEEEecChhhHH
Q 002521 629 PSWISQASARQRRGRAGRV-QPGQCYHLYPRCVYE 662 (913)
Q Consensus 629 ~~~iSka~~~QR~GRAGR~-~~G~c~~L~t~~~~~ 662 (913)
...|+||+||+.|. +.|..+.++++.+.+
T Consensus 335 -----P~~yiHRvGRtARAGR~G~aiSivt~rDv~ 364 (442)
T KOG0340|consen 335 -----PKDYIHRVGRTARAGRKGMAISIVTQRDVE 364 (442)
T ss_pred -----HHHHHHhhcchhcccCCcceEEEechhhHH
Confidence 34889999999999 789999999976554
No 38
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=5.8e-34 Score=342.33 Aligned_cols=420 Identities=21% Similarity=0.262 Sum_probs=277.6
Q ss_pred HHHHHHHHHHHcCCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHHH--HHhCCCcccEe
Q 002521 253 KEKERLLQAIARNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVS--AERGEPLGETV 330 (913)
Q Consensus 253 ~~q~~il~~i~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv~--~~~~~~~g~~v 330 (913)
++|.++-..+.+++|++|++|||||||.++.+.|+..+.+. ..++++++|+|+||.+.++.+. +.+|..++...
T Consensus 35 ~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~----~~k~vYivPlkALa~Ek~~~~~~~~~~GirV~~~T 110 (766)
T COG1204 35 PQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEG----GGKVVYIVPLKALAEEKYEEFSRLEELGIRVGIST 110 (766)
T ss_pred HHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhc----CCcEEEEeChHHHHHHHHHHhhhHHhcCCEEEEec
Confidence 45566666666789999999999999999999999988653 2367788899999999999998 45555555544
Q ss_pred ee-EEeccccCCCCceEEEEecHHHHHHHhcCC-CCCCceEEEecccc----c-cCcchHHHHHHHHHhCccCccceEEE
Q 002521 331 GY-KVRLEGMKGKNTHLLFCTSGILLRRLLSDH-NLNGVTHVFVDEIH----E-RGMNEDFLLIVLKDLLPRRRDLRLIL 403 (913)
Q Consensus 331 Gy-~v~~e~~~~~~~~Ivv~T~g~Ll~~l~~~~-~L~~~s~IIIDEaH----e-r~~~~d~ll~llk~ll~~~~~~kiIl 403 (913)
|- .... ..-.+++|+|+||+.+-..+.+.+ ++..+++|||||+| + ||.-.+.+.. +.....+.+|+|+
T Consensus 111 gD~~~~~--~~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~~RG~~lE~iv~---r~~~~~~~~rivg 185 (766)
T COG1204 111 GDYDLDD--ERLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDRTRGPVLESIVA---RMRRLNELIRIVG 185 (766)
T ss_pred CCcccch--hhhccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecCCcccCceehhHHH---HHHhhCcceEEEE
Confidence 41 1111 112568999999999998887766 78999999999999 3 6665555444 4444555689999
Q ss_pred ecccc-CHHHHHhhhCCCCeeccCCccccceee----ehhhHHhhhcccccccccccchhhhhHHHHhhhhchhhhhhhH
Q 002521 404 MSATL-NAELFSNYFGGAPTIHIPGFTYPVQAH----FLEDVLEMTGYKLTSLNQVDDYGQEKLWKTQRQLLPRKRKNQI 478 (913)
Q Consensus 404 mSATl-~~~~~~~yf~~~~~i~i~g~~~pv~~~----yl~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 478 (913)
+|||+ |.+.++.|++..++ .... +|+..+ +.... .+.. +..+.|. ...
T Consensus 186 LSATlpN~~evA~wL~a~~~-~~~~--rp~~l~~~v~~~~~~---~~~~----------~~~k~~~-------~~~---- 238 (766)
T COG1204 186 LSATLPNAEEVADWLNAKLV-ESDW--RPVPLRRGVPYVGAF---LGAD----------GKKKTWP-------LLI---- 238 (766)
T ss_pred EeeecCCHHHHHHHhCCccc-ccCC--CCcccccCCccceEE---EEec----------Ccccccc-------ccc----
Confidence 99999 88999999986655 2222 222110 00000 0000 0000000 000
Q ss_pred HHHHHHHHhhccccccchhhhhhhccccccccchhhHHHHHHHHhhhcCCCcEEEEcCChHHHHHHHHHHHc---C----
Q 002521 479 TALVEDALHKSNFENYSSRARDSLASWTADCIGFNLIEAVLCHICRKECPGAVLVFMTGWEDISCLRDQLKS---H---- 551 (913)
Q Consensus 479 ~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~li~~ll~~i~~~~~~g~iLVF~~~~~~i~~l~~~L~~---~---- 551 (913)
+......++. ....+|.+||||+++..+...+..|.. .
T Consensus 239 --------------------------------~~~~~~~v~~---~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~ 283 (766)
T COG1204 239 --------------------------------DNLALELVLE---SLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSD 283 (766)
T ss_pred --------------------------------hHHHHHHHHH---HHhcCCeEEEEEecCchHHHHHHHHHHHHhhcCCh
Confidence 0000011111 113578999999999999999988873 0
Q ss_pred -----------CCCC------------CCCCeEEEEecCCCChHHHHHHhccCCCCccEEEEecchhhhcCCCCCeEEEE
Q 002521 552 -----------PLLG------------DPNRVLLLTCHGSMPTSEQKFIFEKAPPNIRKIVLATNMAEASITINDIVFVV 608 (913)
Q Consensus 552 -----------~~~~------------~~~~~~v~~lHs~l~~~er~~v~~~f~~g~~kVLVATniae~GIdIp~v~~VI 608 (913)
+... ......+.+||+||+.++|..+.+.|+.|+++||+||++++.|+|.|.-++||
T Consensus 284 ~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAGL~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VII 363 (766)
T COG1204 284 DEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAGLPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVII 363 (766)
T ss_pred hhhhhccccccccccccccccchHHHHHHHHhCccccccCCCHHHHHHHHHHHhcCCceEEEechHHhhhcCCcceEEEE
Confidence 0010 00123588999999999999999999999999999999999999999888888
Q ss_pred eCCCCcceeecCCCCCCcCCccccCHhhHHHHhcccCCC---CCcEEEEec-Chhh---HHhhhhCCCCcccccC-----
Q 002521 609 DCGKAKETTYDALNNTPCLLPSWISQASARQRRGRAGRV---QPGQCYHLY-PRCV---YEAFAEYQLPELLRTP----- 676 (913)
Q Consensus 609 d~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~---~~G~c~~L~-t~~~---~~~l~~~~~pEi~r~~----- 676 (913)
- | ...||+..+ ...+++-++.||.|||||. .-|..+.+- +... +........||....-
T Consensus 364 k-~---~~~y~~~~g-----~~~i~~~dv~QM~GRAGRPg~d~~G~~~i~~~~~~~~~~~~~~~~~~~~e~~~s~l~~~~ 434 (766)
T COG1204 364 K-D---TRRYDPKGG-----IVDIPVLDVLQMAGRAGRPGYDDYGEAIILATSHDELEYLAELYIQSEPEPIESKLGDEL 434 (766)
T ss_pred e-e---eEEEcCCCC-----eEECchhhHhhccCcCCCCCcCCCCcEEEEecCccchhHHHHHhhccCcchHHHhhcccc
Confidence 4 2 344776222 4567999999999999998 335544443 3222 2233444555541111
Q ss_pred -hhhHHHHHhhcCC----CCHHHHHHhccCCCc-------hHHHHHHHHHHHHcC-CCCCC---CCcccccccccccCCC
Q 002521 677 -LNSLCLQIKSLQV----GSIGEFLSAALQPPE-------PLAVQNAVDFLKRIG-ALDEK---ENLTNLGKFLSMLPVD 740 (913)
Q Consensus 677 -L~~~~L~lk~l~~----~~~~~fl~~~l~pP~-------~~~i~~al~~L~~~g-ald~~---~~lT~lG~~ls~lpl~ 740 (913)
+...++.+.+.+. .....|+...+-.|. ...+..++..|.+.+ .++.. -..|.+|+.++++.++
T Consensus 435 ~~~~~l~~v~~~~~~v~~~~~~~f~~~t~~~~~~~~~~~~~~~i~~~~~~L~~~~~~~~~~~~~~~ate~g~~~s~~yi~ 514 (766)
T COG1204 435 NLRTFLLGVISVGDAVSWLELTDFYERTFYNPQTYGEGMLREEILASLRYLEENGLILDADWEALHATELGKLVSRLYID 514 (766)
T ss_pred cchheEEEEEeccchhhHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHHHhccceeeccccccchhHHHHHhhhccCC
Confidence 1111221222111 123445555554444 356788999999986 55543 2689999999999999
Q ss_pred hHHHHHHHHhhh
Q 002521 741 PKLGKMLVMGAI 752 (913)
Q Consensus 741 p~~~k~ll~~~~ 752 (913)
|..++.+.....
T Consensus 515 ~~sa~~~~~~l~ 526 (766)
T COG1204 515 PESAKIFRDLLA 526 (766)
T ss_pred HHHHHHHHHHHH
Confidence 999998876654
No 39
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=5.2e-34 Score=341.61 Aligned_cols=304 Identities=18% Similarity=0.229 Sum_probs=212.5
Q ss_pred HHHHHHHHHHHHcCCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHHHHHhCCCcccEee
Q 002521 252 FKEKERLLQAIARNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVSAERGEPLGETVG 331 (913)
Q Consensus 252 ~~~q~~il~~i~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv~~~~~~~~g~~vG 331 (913)
.+.|+++++++..++++++++|||+|||+++.++++.. . ..++|++|+++|+.|+.+.+.. .|.......+
T Consensus 27 r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~-----~---g~tlVisPl~sL~~dqv~~l~~-~gi~~~~~~s 97 (607)
T PRK11057 27 RPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL-----D---GLTLVVSPLISLMKDQVDQLLA-NGVAAACLNS 97 (607)
T ss_pred CHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc-----C---CCEEEEecHHHHHHHHHHHHHH-cCCcEEEEcC
Confidence 46799999999999999999999999999988887642 1 2456666999999999888865 3322211111
Q ss_pred eEEe------ccccCCCCceEEEEecHHHHHH-HhcCCCCCCceEEEeccccccC-----cchHHHHHHHHHhCccCccc
Q 002521 332 YKVR------LEGMKGKNTHLLFCTSGILLRR-LLSDHNLNGVTHVFVDEIHERG-----MNEDFLLIVLKDLLPRRRDL 399 (913)
Q Consensus 332 y~v~------~e~~~~~~~~Ivv~T~g~Ll~~-l~~~~~L~~~s~IIIDEaHer~-----~~~d~ll~llk~ll~~~~~~ 399 (913)
-... +........+|+|+||+.|... +.......++++|||||||+.. +..++ ..+..+....++.
T Consensus 98 ~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~~G~~fr~~y--~~L~~l~~~~p~~ 175 (607)
T PRK11057 98 TQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCISQWGHDFRPEY--AALGQLRQRFPTL 175 (607)
T ss_pred CCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCccccccccCcccHHH--HHHHHHHHhCCCC
Confidence 0000 1122335678999999998742 2222234578999999999643 22222 2233334445778
Q ss_pred eEEEeccccCHHH---HHhhhC-CCCeeccCCccccceeeehhhHHhhhcccccccccccchhhhhHHHHhhhhchhhhh
Q 002521 400 RLILMSATLNAEL---FSNYFG-GAPTIHIPGFTYPVQAHFLEDVLEMTGYKLTSLNQVDDYGQEKLWKTQRQLLPRKRK 475 (913)
Q Consensus 400 kiIlmSATl~~~~---~~~yf~-~~~~i~i~g~~~pv~~~yl~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (913)
++++||||++... +...++ ..|.+.+.....|. ..|. .. .
T Consensus 176 ~~v~lTAT~~~~~~~di~~~l~l~~~~~~~~~~~r~n-l~~~----------v~----------------------~--- 219 (607)
T PRK11057 176 PFMALTATADDTTRQDIVRLLGLNDPLIQISSFDRPN-IRYT----------LV----------------------E--- 219 (607)
T ss_pred cEEEEecCCChhHHHHHHHHhCCCCeEEEECCCCCCc-ceee----------ee----------------------e---
Confidence 9999999997653 333332 22333222211110 0000 00 0
Q ss_pred hhHHHHHHHHHhhccccccchhhhhhhccccccccchhhHHHHHHHHhhhcCCCcEEEEcCChHHHHHHHHHHHcCCCCC
Q 002521 476 NQITALVEDALHKSNFENYSSRARDSLASWTADCIGFNLIEAVLCHICRKECPGAVLVFMTGWEDISCLRDQLKSHPLLG 555 (913)
Q Consensus 476 ~~i~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~li~~ll~~i~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~~ 555 (913)
....... +..+.....++++||||+++++++.+++.|...
T Consensus 220 -----------------------------------~~~~~~~-l~~~l~~~~~~~~IIFc~tr~~~e~la~~L~~~---- 259 (607)
T PRK11057 220 -----------------------------------KFKPLDQ-LMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSR---- 259 (607)
T ss_pred -----------------------------------ccchHHH-HHHHHHhcCCCCEEEEECcHHHHHHHHHHHHhC----
Confidence 0000011 112223345678999999999999999999986
Q ss_pred CCCCeEEEEecCCCChHHHHHHhccCCCCccEEEEecchhhhcCCCCCeEEEEeCCCCcceeecCCCCCCcCCccccCHh
Q 002521 556 DPNRVLLLTCHGSMPTSEQKFIFEKAPPNIRKIVLATNMAEASITINDIVFVVDCGKAKETTYDALNNTPCLLPSWISQA 635 (913)
Q Consensus 556 ~~~~~~v~~lHs~l~~~er~~v~~~f~~g~~kVLVATniae~GIdIp~v~~VId~g~~k~~~yd~~~~~~~l~~~~iSka 635 (913)
++.+..+||+|++++|..+++.|+.|..+|||||+++++|||+|+|++||+++.|+ |..
T Consensus 260 ---g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~VI~~d~P~------------------s~~ 318 (607)
T PRK11057 260 ---GISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPR------------------NIE 318 (607)
T ss_pred ---CCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCEEEEeCCCC------------------CHH
Confidence 77899999999999999999999999999999999999999999999999977765 777
Q ss_pred hHHHHhcccCCC-CCcEEEEecChhhHHh
Q 002521 636 SARQRRGRAGRV-QPGQCYHLYPRCVYEA 663 (913)
Q Consensus 636 ~~~QR~GRAGR~-~~G~c~~L~t~~~~~~ 663 (913)
+|+||+|||||. .+|.|+.+|+..++..
T Consensus 319 ~y~Qr~GRaGR~G~~~~~ill~~~~d~~~ 347 (607)
T PRK11057 319 SYYQETGRAGRDGLPAEAMLFYDPADMAW 347 (607)
T ss_pred HHHHHhhhccCCCCCceEEEEeCHHHHHH
Confidence 999999999999 6899999999887543
No 40
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=6.9e-34 Score=351.95 Aligned_cols=392 Identities=21% Similarity=0.233 Sum_probs=242.0
Q ss_pred cHHHHHHHHHHHHcCCeEEEEcCCCchHHhHHHHHHHHHHHHhCC----CCceEEEEcchhHHHHHHHHHHHHHH-----
Q 002521 251 SFKEKERLLQAIARNQVIVISGETGCGKTTQLPQYILESEIESGR----GAFCNIICTQPRRISAMAVSERVSAE----- 321 (913)
Q Consensus 251 ~~~~q~~il~~i~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~----~~~~~Ilv~qPrr~La~qva~rv~~~----- 321 (913)
.++.|.++++.+.++++++|+||||||||+++.+++++.+..... ...+.+++++|+|+||.|+++++...
T Consensus 33 ~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraLa~di~~~L~~~l~~i~ 112 (876)
T PRK13767 33 FTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRALNNDIHRNLEEPLTEIR 112 (876)
T ss_pred CCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHHHHHHHHHHHHHHHHHH
Confidence 456788899999999999999999999999999999988765321 22456777789999999998866431
Q ss_pred -----hCCCc-ccEeeeEEec----c--ccCCCCceEEEEecHHHHHHHhcCC---CCCCceEEEecccccc-----Ccc
Q 002521 322 -----RGEPL-GETVGYKVRL----E--GMKGKNTHLLFCTSGILLRRLLSDH---NLNGVTHVFVDEIHER-----GMN 381 (913)
Q Consensus 322 -----~~~~~-g~~vGy~v~~----e--~~~~~~~~Ivv~T~g~Ll~~l~~~~---~L~~~s~IIIDEaHer-----~~~ 381 (913)
.|..+ +..++..... + ......++|+|+||+.|..++.+.. .+.++++|||||||+. |..
T Consensus 113 ~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~VVIDE~H~l~~~~RG~~ 192 (876)
T PRK13767 113 EIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTVKWVIVDEIHSLAENKRGVH 192 (876)
T ss_pred HHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCEEEEechhhhccCccHHH
Confidence 23333 2222211110 0 1122457999999999987765432 5789999999999953 333
Q ss_pred hHHHHHHHHHhCccCccceEEEecccc-CHHHHHhhhCCCCeeccCCcccccee---eehhhHHhhhcccccccccccch
Q 002521 382 EDFLLIVLKDLLPRRRDLRLILMSATL-NAELFSNYFGGAPTIHIPGFTYPVQA---HFLEDVLEMTGYKLTSLNQVDDY 457 (913)
Q Consensus 382 ~d~ll~llk~ll~~~~~~kiIlmSATl-~~~~~~~yf~~~~~i~i~g~~~pv~~---~yl~di~~~~~~~~~~~~~~~~~ 457 (913)
....+..+..+. .++.++|++|||+ +.+.+..|+.+.... +...++.. .+.... ... ...+. .+.
T Consensus 193 l~~~L~rL~~l~--~~~~q~IglSATl~~~~~va~~L~~~~~~---~~~r~~~iv~~~~~k~~-~i~--v~~p~---~~l 261 (876)
T PRK13767 193 LSLSLERLEELA--GGEFVRIGLSATIEPLEEVAKFLVGYEDD---GEPRDCEIVDARFVKPF-DIK--VISPV---DDL 261 (876)
T ss_pred HHHHHHHHHHhc--CCCCeEEEEecccCCHHHHHHHhcCcccc---CCCCceEEEccCCCccc-eEE--EeccC---ccc
Confidence 333444444443 2467999999999 557788888653110 00011110 000000 000 00000 000
Q ss_pred hhhhHHHHhhhhchhhhhhhHHHHHHHHHhhccccccchhhhhhhccccccccchhhHHHHHHHHhhhcCCCcEEEEcCC
Q 002521 458 GQEKLWKTQRQLLPRKRKNQITALVEDALHKSNFENYSSRARDSLASWTADCIGFNLIEAVLCHICRKECPGAVLVFMTG 537 (913)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~i~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~li~~ll~~i~~~~~~g~iLVF~~~ 537 (913)
.... . .... ..+...+..+.. ..+++||||++
T Consensus 262 ------------~~~~-~--------------------------------~~~~-~~l~~~L~~~i~--~~~~~LVF~nT 293 (876)
T PRK13767 262 ------------IHTP-A--------------------------------EEIS-EALYETLHELIK--EHRTTLIFTNT 293 (876)
T ss_pred ------------cccc-c--------------------------------chhH-HHHHHHHHHHHh--cCCCEEEEeCC
Confidence 0000 0 0000 001112222222 35689999999
Q ss_pred hHHHHHHHHHHHcCCCCCCCCCeEEEEecCCCChHHHHHHhccCCCCccEEEEecchhhhcCCCCCeEEEEeCCCCccee
Q 002521 538 WEDISCLRDQLKSHPLLGDPNRVLLLTCHGSMPTSEQKFIFEKAPPNIRKIVLATNMAEASITINDIVFVVDCGKAKETT 617 (913)
Q Consensus 538 ~~~i~~l~~~L~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~g~~kVLVATniae~GIdIp~v~~VId~g~~k~~~ 617 (913)
+..++.++..|...... ...+..+..+||+|+.++|..+++.|++|.++|||||+++++|||||+|++||+.|.|+
T Consensus 294 r~~ae~la~~L~~~~~~-~~~~~~i~~hHg~ls~~~R~~ve~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~~~~P~--- 369 (876)
T PRK13767 294 RSGAERVLYNLRKRFPE-EYDEDNIGAHHSSLSREVRLEVEEKLKRGELKVVVSSTSLELGIDIGYIDLVVLLGSPK--- 369 (876)
T ss_pred HHHHHHHHHHHHHhchh-hccccceeeeeCCCCHHHHHHHHHHHHcCCCeEEEECChHHhcCCCCCCcEEEEeCCCC---
Confidence 99999999999863110 01235689999999999999999999999999999999999999999999999977765
Q ss_pred ecCCCCCCcCCccccCHhhHHHHhcccCCC----CCcEEEEecChhhHHh------hhhCCC--CcccccChhhHHHHHh
Q 002521 618 YDALNNTPCLLPSWISQASARQRRGRAGRV----QPGQCYHLYPRCVYEA------FAEYQL--PELLRTPLNSLCLQIK 685 (913)
Q Consensus 618 yd~~~~~~~l~~~~iSka~~~QR~GRAGR~----~~G~c~~L~t~~~~~~------l~~~~~--pEi~r~~L~~~~L~lk 685 (913)
|.++|+||+|||||. ..|.++.+...+..+. ..+..+ ..+...+++-++-++.
T Consensus 370 ---------------sv~~ylQRiGRaGR~~g~~~~g~ii~~~~~~l~e~~~~~~~~~~~~ie~~~~~~~~~dvl~q~i~ 434 (876)
T PRK13767 370 ---------------SVSRLLQRIGRAGHRLGEVSKGRIIVVDRDDLVECAVLLKKAREGKIDRVHIPKNPLDVLAQHIV 434 (876)
T ss_pred ---------------CHHHHHHhcccCCCCCCCCCcEEEEEcCchhHHHHHHHHHHHHhCCCCCCCCCCCcHHHHHHHHH
Confidence 778999999999987 2477776543332221 111111 1122334544444444
Q ss_pred hcCC------CCHHHHHHhcc--CCCchHHHHHHHHHHHHcCC
Q 002521 686 SLQV------GSIGEFLSAAL--QPPEPLAVQNAVDFLKRIGA 720 (913)
Q Consensus 686 ~l~~------~~~~~fl~~~l--~pP~~~~i~~al~~L~~~ga 720 (913)
++-. +++.+++..+. .--+.+.+...++.|..-++
T Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~ 477 (876)
T PRK13767 435 GMAIERPWDIEEAYNIVRRAYPYRDLSDEDFESVLRYLAGDYG 477 (876)
T ss_pred HHHHcCCCCHHHHHHHHhccCCcccCCHHHHHHHHHHHhccCc
Confidence 4321 22333332211 11244678888999976643
No 41
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=6e-34 Score=343.00 Aligned_cols=308 Identities=18% Similarity=0.187 Sum_probs=209.4
Q ss_pred CcHHHHHHHHHHHHcCCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHHHHHhCCCcccE
Q 002521 250 PSFKEKERLLQAIARNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVSAERGEPLGET 329 (913)
Q Consensus 250 P~~~~q~~il~~i~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv~~~~~~~~g~~ 329 (913)
-..+.|.++++++..++++++++|||+|||+++.++++.. + +.+||+.|+++|+.++...+.. .|......
T Consensus 460 sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~------~--GiTLVISPLiSLmqDQV~~L~~-~GI~Aa~L 530 (1195)
T PLN03137 460 SFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALIC------P--GITLVISPLVSLIQDQIMNLLQ-ANIPAASL 530 (1195)
T ss_pred CCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc------C--CcEEEEeCHHHHHHHHHHHHHh-CCCeEEEE
Confidence 4457899999999999999999999999999999998752 1 2456666999999855555533 22221111
Q ss_pred eeeEEe------ccccC--CCCceEEEEecHHHHH------HHhcCCCCCCceEEEeccccccC-----cchHHHHHHHH
Q 002521 330 VGYKVR------LEGMK--GKNTHLLFCTSGILLR------RLLSDHNLNGVTHVFVDEIHERG-----MNEDFLLIVLK 390 (913)
Q Consensus 330 vGy~v~------~e~~~--~~~~~Ivv~T~g~Ll~------~l~~~~~L~~~s~IIIDEaHer~-----~~~d~ll~llk 390 (913)
.|.... +.... ....+|+|+||++|.. .+..-.....+++|||||||+.. +..++.. +.
T Consensus 531 ~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVIDEAHcVSqWGhDFRpdYr~--L~ 608 (1195)
T PLN03137 531 SAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVSQWGHDFRPDYQG--LG 608 (1195)
T ss_pred ECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccCcchhhhhcccchHHHHHH--HH
Confidence 111100 01111 1457999999998752 22211134558999999999642 2233321 11
Q ss_pred HhCccCccceEEEeccccCHH---HHHhhhCCC-CeeccCCccccceeeehhhHHhhhcccccccccccchhhhhHHHHh
Q 002521 391 DLLPRRRDLRLILMSATLNAE---LFSNYFGGA-PTIHIPGFTYPVQAHFLEDVLEMTGYKLTSLNQVDDYGQEKLWKTQ 466 (913)
Q Consensus 391 ~ll~~~~~~kiIlmSATl~~~---~~~~yf~~~-~~i~i~g~~~pv~~~yl~di~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (913)
.+....++.+++++|||++.. .+.+.++.. +++...+...| ..+|.-
T Consensus 609 ~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~Sf~Rp-NL~y~V---------------------------- 659 (1195)
T PLN03137 609 ILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFRQSFNRP-NLWYSV---------------------------- 659 (1195)
T ss_pred HHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEeecccCcc-ceEEEE----------------------------
Confidence 223344667899999999764 344444421 22222111111 111100
Q ss_pred hhhchhhhhhhHHHHHHHHHhhccccccchhhhhhhccccccccchhhHHHHHHHHhhhcCCCcEEEEcCChHHHHHHHH
Q 002521 467 RQLLPRKRKNQITALVEDALHKSNFENYSSRARDSLASWTADCIGFNLIEAVLCHICRKECPGAVLVFMTGWEDISCLRD 546 (913)
Q Consensus 467 ~~~~~~~~~~~i~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~li~~ll~~i~~~~~~g~iLVF~~~~~~i~~l~~ 546 (913)
.... . .....+...+.....++..||||.++++++.++.
T Consensus 660 ---v~k~-k-------------------------------------k~le~L~~~I~~~~~~esgIIYC~SRke~E~LAe 698 (1195)
T PLN03137 660 ---VPKT-K-------------------------------------KCLEDIDKFIKENHFDECGIIYCLSRMDCEKVAE 698 (1195)
T ss_pred ---eccc-h-------------------------------------hHHHHHHHHHHhcccCCCceeEeCchhHHHHHHH
Confidence 0000 0 0001111122222235678999999999999999
Q ss_pred HHHcCCCCCCCCCeEEEEecCCCChHHHHHHhccCCCCccEEEEecchhhhcCCCCCeEEEEeCCCCcceeecCCCCCCc
Q 002521 547 QLKSHPLLGDPNRVLLLTCHGSMPTSEQKFIFEKAPPNIRKIVLATNMAEASITINDIVFVVDCGKAKETTYDALNNTPC 626 (913)
Q Consensus 547 ~L~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~g~~kVLVATniae~GIdIp~v~~VId~g~~k~~~yd~~~~~~~ 626 (913)
.|... ++.+.++||+|++++|..+++.|..|+++|||||+++++|||+|+|++||++++|+
T Consensus 699 ~L~~~-------Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdAFGMGIDkPDVR~VIHydlPk------------ 759 (1195)
T PLN03137 699 RLQEF-------GHKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPK------------ 759 (1195)
T ss_pred HHHHC-------CCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEechhhcCCCccCCcEEEEcCCCC------------
Confidence 99876 78899999999999999999999999999999999999999999999999988887
Q ss_pred CCccccCHhhHHHHhcccCCC-CCcEEEEecChhhHHh
Q 002521 627 LLPSWISQASARQRRGRAGRV-QPGQCYHLYPRCVYEA 663 (913)
Q Consensus 627 l~~~~iSka~~~QR~GRAGR~-~~G~c~~L~t~~~~~~ 663 (913)
|..+|+||+|||||. .+|.|+.+|+..++..
T Consensus 760 ------SiEsYyQriGRAGRDG~~g~cILlys~~D~~~ 791 (1195)
T PLN03137 760 ------SIEGYHQECGRAGRDGQRSSCVLYYSYSDYIR 791 (1195)
T ss_pred ------CHHHHHhhhcccCCCCCCceEEEEecHHHHHH
Confidence 677999999999999 6899999999877653
No 42
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=1.7e-33 Score=344.95 Aligned_cols=316 Identities=20% Similarity=0.266 Sum_probs=217.0
Q ss_pred hhcCchhhhHHhhhcCCCcHHHHHHHHHHHHcC------CeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcch
Q 002521 233 WQESPEGNKMLDFRKSLPSFKEKERLLQAIARN------QVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQP 306 (913)
Q Consensus 233 ~~~~~~~~~l~~~r~~lP~~~~q~~il~~i~~~------~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qP 306 (913)
+.....+..-+....++..++.|.++++.+..+ .+++++||||||||.++..+++..+.. +. .+++++|
T Consensus 434 ~~~~~~~~~~~~~~~~f~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~---g~--qvlvLvP 508 (926)
T TIGR00580 434 FPPDLEWQQEFEDSFPFEETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLD---GK--QVAVLVP 508 (926)
T ss_pred CCCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHh---CC--eEEEEeC
Confidence 333444444444445555678888889888774 689999999999999999988876632 33 4555559
Q ss_pred hHHHHHHHHHHHHHHhCCCcccEeeeEEec----------cccCCCCceEEEEecHHHHHHHhcCCCCCCceEEEecccc
Q 002521 307 RRISAMAVSERVSAERGEPLGETVGYKVRL----------EGMKGKNTHLLFCTSGILLRRLLSDHNLNGVTHVFVDEIH 376 (913)
Q Consensus 307 rr~La~qva~rv~~~~~~~~g~~vGy~v~~----------e~~~~~~~~Ivv~T~g~Ll~~l~~~~~L~~~s~IIIDEaH 376 (913)
|++||.|+++.+.+.++. .+..++.-.++ +....+..+|+|+||..+ ..+..+.++++|||||+|
T Consensus 509 T~~LA~Q~~~~f~~~~~~-~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll----~~~v~f~~L~llVIDEah 583 (926)
T TIGR00580 509 TTLLAQQHFETFKERFAN-FPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLL----QKDVKFKDLGLLIIDEEQ 583 (926)
T ss_pred cHHHHHHHHHHHHHHhcc-CCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHh----hCCCCcccCCEEEeeccc
Confidence 999999999999876542 23333322211 112234689999999533 344478999999999999
Q ss_pred ccCcchHHHHHHHHHhCccCccceEEEeccccCHHHHHhhh-C--CCCeeccC-CccccceeeehhhHHhhhcccccccc
Q 002521 377 ERGMNEDFLLIVLKDLLPRRRDLRLILMSATLNAELFSNYF-G--GAPTIHIP-GFTYPVQAHFLEDVLEMTGYKLTSLN 452 (913)
Q Consensus 377 er~~~~d~ll~llk~ll~~~~~~kiIlmSATl~~~~~~~yf-~--~~~~i~i~-g~~~pv~~~yl~di~~~~~~~~~~~~ 452 (913)
+.+.... ..++ ...++.++++||||+.+..+...+ + +..++..+ ....|+..++.+.
T Consensus 584 rfgv~~~---~~L~---~~~~~~~vL~~SATpiprtl~~~l~g~~d~s~I~~~p~~R~~V~t~v~~~------------- 644 (926)
T TIGR00580 584 RFGVKQK---EKLK---ELRTSVDVLTLSATPIPRTLHMSMSGIRDLSIIATPPEDRLPVRTFVMEY------------- 644 (926)
T ss_pred ccchhHH---HHHH---hcCCCCCEEEEecCCCHHHHHHHHhcCCCcEEEecCCCCccceEEEEEec-------------
Confidence 7654321 1222 234567899999998766544322 2 22222222 1223343332110
Q ss_pred cccchhhhhHHHHhhhhchhhhhhhHHHHHHHHHhhccccccchhhhhhhccccccccchhhHHHHHHHHhhhcCCCcEE
Q 002521 453 QVDDYGQEKLWKTQRQLLPRKRKNQITALVEDALHKSNFENYSSRARDSLASWTADCIGFNLIEAVLCHICRKECPGAVL 532 (913)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~li~~ll~~i~~~~~~g~iL 532 (913)
.. ..+ ...+...+ ..+++++
T Consensus 645 ---------------------~~----~~i--------------------------------~~~i~~el---~~g~qv~ 664 (926)
T TIGR00580 645 ---------------------DP----ELV--------------------------------REAIRREL---LRGGQVF 664 (926)
T ss_pred ---------------------CH----HHH--------------------------------HHHHHHHH---HcCCeEE
Confidence 00 000 00111111 2467899
Q ss_pred EEcCChHHHHHHHHHHHcCCCCCCCCCeEEEEecCCCChHHHHHHhccCCCCccEEEEecchhhhcCCCCCeEEEEeCCC
Q 002521 533 VFMTGWEDISCLRDQLKSHPLLGDPNRVLLLTCHGSMPTSEQKFIFEKAPPNIRKIVLATNMAEASITINDIVFVVDCGK 612 (913)
Q Consensus 533 VF~~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~g~~kVLVATniae~GIdIp~v~~VId~g~ 612 (913)
||||++++++.+++.|.... +++.+..+||+|++.+|..+++.|++|+.+|||||+++|+|||||++++||..+.
T Consensus 665 if~n~i~~~e~l~~~L~~~~-----p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v~~VIi~~a 739 (926)
T TIGR00580 665 YVHNRIESIEKLATQLRELV-----PEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNANTIIIERA 739 (926)
T ss_pred EEECCcHHHHHHHHHHHHhC-----CCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcccccccCCEEEEecC
Confidence 99999999999999998741 2578999999999999999999999999999999999999999999999998443
Q ss_pred CcceeecCCCCCCcCCccccCHhhHHHHhcccCCC-CCcEEEEecChh
Q 002521 613 AKETTYDALNNTPCLLPSWISQASARQRRGRAGRV-QPGQCYHLYPRC 659 (913)
Q Consensus 613 ~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~-~~G~c~~L~t~~ 659 (913)
+. | +.+++.||+||+||. +.|.||.+++..
T Consensus 740 ~~---~--------------gls~l~Qr~GRvGR~g~~g~aill~~~~ 770 (926)
T TIGR00580 740 DK---F--------------GLAQLYQLRGRVGRSKKKAYAYLLYPHQ 770 (926)
T ss_pred CC---C--------------CHHHHHHHhcCCCCCCCCeEEEEEECCc
Confidence 32 1 344788999999999 789999998653
No 43
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=1.1e-33 Score=309.13 Aligned_cols=323 Identities=16% Similarity=0.206 Sum_probs=230.0
Q ss_pred CCcHHHHHHHHHHHHcCCeEEEEcCCCchHHhHHHHHHHHHHHHhC----CCCceEEEEcchhHHHHHHHHHHHHHH---
Q 002521 249 LPSFKEKERLLQAIARNQVIVISGETGCGKTTQLPQYILESEIESG----RGAFCNIICTQPRRISAMAVSERVSAE--- 321 (913)
Q Consensus 249 lP~~~~q~~il~~i~~~~~vII~apTGSGKTt~~~~~ile~~~~~~----~~~~~~Ilv~qPrr~La~qva~rv~~~--- 321 (913)
.-+...|...+...+.|.+|+..|-||||||++++.|+++.++..+ .|-.| +++.|||+||.|+++.+.+.
T Consensus 90 v~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGa--lIISPTRELA~QtFevL~kvgk~ 167 (758)
T KOG0343|consen 90 VKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGA--LIISPTRELALQTFEVLNKVGKH 167 (758)
T ss_pred ccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcCCCCCCCcee--EEecchHHHHHHHHHHHHHHhhc
Confidence 3446677778888889999999999999999999999999998754 23334 44459999999999988763
Q ss_pred hCCCcccEee-eEEeccccCCCCceEEEEecHHHHHHHhcCC--CCCCceEEEeccccccCcchHHHHHHHHHhCccCcc
Q 002521 322 RGEPLGETVG-YKVRLEGMKGKNTHLLFCTSGILLRRLLSDH--NLNGVTHVFVDEIHERGMNEDFLLIVLKDLLPRRRD 398 (913)
Q Consensus 322 ~~~~~g~~vG-y~v~~e~~~~~~~~Ivv~T~g~Ll~~l~~~~--~L~~~s~IIIDEaHer~~~~d~ll~llk~ll~~~~~ 398 (913)
.+...|..+| -.+.++...-...+|+|||||+|+++|...+ ...++..+|+|||+ |-++..|--.+-..+-...+.
T Consensus 168 h~fSaGLiiGG~~~k~E~eRi~~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDEAD-R~LDMGFk~tL~~Ii~~lP~~ 246 (758)
T KOG0343|consen 168 HDFSAGLIIGGKDVKFELERISQMNILVCTPGRLLQHMDENPNFSTSNLQMLVLDEAD-RMLDMGFKKTLNAIIENLPKK 246 (758)
T ss_pred cccccceeecCchhHHHHHhhhcCCeEEechHHHHHHhhhcCCCCCCcceEEEeccHH-HHHHHhHHHHHHHHHHhCChh
Confidence 2223333333 1233444444668999999999999998887 56789999999999 434444433332222233455
Q ss_pred ceEEEeccccC--HHHHHhhh-CCCCeeccCCccccceeeehhhHHhhhcccccccccccchhhhhHHHHhhhhchhhhh
Q 002521 399 LRLILMSATLN--AELFSNYF-GGAPTIHIPGFTYPVQAHFLEDVLEMTGYKLTSLNQVDDYGQEKLWKTQRQLLPRKRK 475 (913)
Q Consensus 399 ~kiIlmSATl~--~~~~~~yf-~~~~~i~i~g~~~pv~~~yl~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (913)
.|.+++|||.. ..++++.- .++..+.+-...
T Consensus 247 RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a---------------------------------------------- 280 (758)
T KOG0343|consen 247 RQTLLFSATQTKSVKDLARLSLKDPVYVSVHENA---------------------------------------------- 280 (758)
T ss_pred heeeeeecccchhHHHHHHhhcCCCcEEEEeccc----------------------------------------------
Confidence 68999999984 34555442 233222221000
Q ss_pred hhHHHHHHHHHhhccccccchhhhhhhccccccccchhhHHHHHHHHhhhcCCCcEEEEcCChHHHHHHHHHHHcCCCCC
Q 002521 476 NQITALVEDALHKSNFENYSSRARDSLASWTADCIGFNLIEAVLCHICRKECPGAVLVFMTGWEDISCLRDQLKSHPLLG 555 (913)
Q Consensus 476 ~~i~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~li~~ll~~i~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~~ 555 (913)
...+...+.+.. ..+....+...|....+.....++|||+.+.+++..+++.++..
T Consensus 281 -------------------~~atP~~L~Q~y-~~v~l~~Ki~~L~sFI~shlk~K~iVF~SscKqvkf~~e~F~rl---- 336 (758)
T KOG0343|consen 281 -------------------VAATPSNLQQSY-VIVPLEDKIDMLWSFIKSHLKKKSIVFLSSCKQVKFLYEAFCRL---- 336 (758)
T ss_pred -------------------cccChhhhhheE-EEEehhhHHHHHHHHHHhccccceEEEEehhhHHHHHHHHHHhc----
Confidence 000000011111 11122223334455556666788999999999999999999875
Q ss_pred CCCCeEEEEecCCCChHHHHHHhccCCCCccEEEEecchhhhcCCCCCeEEEEeCCCCcceeecCCCCCCcCCccccCHh
Q 002521 556 DPNRVLLLTCHGSMPTSEQKFIFEKAPPNIRKIVLATNMAEASITINDIVFVVDCGKAKETTYDALNNTPCLLPSWISQA 635 (913)
Q Consensus 556 ~~~~~~v~~lHs~l~~~er~~v~~~f~~g~~kVLVATniae~GIdIp~v~~VId~g~~k~~~yd~~~~~~~l~~~~iSka 635 (913)
.++..+..+||+|++..|-.++..|-...--|++||+++++|+|+|.|++||..+.|- ...
T Consensus 337 -rpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDFpaVdwViQ~DCPe------------------dv~ 397 (758)
T KOG0343|consen 337 -RPGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDFPAVDWVIQVDCPE------------------DVD 397 (758)
T ss_pred -CCCCceeeeccchhHHHHHHHHHHHHHhcceEEEeehhhhccCCCcccceEEEecCch------------------hHH
Confidence 2488899999999999999999999988889999999999999999999999955443 455
Q ss_pred hHHHHhcccCCC-CCcEEEEecChhhHHh
Q 002521 636 SARQRRGRAGRV-QPGQCYHLYPRCVYEA 663 (913)
Q Consensus 636 ~~~QR~GRAGR~-~~G~c~~L~t~~~~~~ 663 (913)
.|+||+||+.|. ..|.|+.+.+....+.
T Consensus 398 tYIHRvGRtAR~~~~G~sll~L~psEeE~ 426 (758)
T KOG0343|consen 398 TYIHRVGRTARYKERGESLLMLTPSEEEA 426 (758)
T ss_pred HHHHHhhhhhcccCCCceEEEEcchhHHH
Confidence 788999999999 7899999988766443
No 44
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.6e-33 Score=285.85 Aligned_cols=331 Identities=16% Similarity=0.216 Sum_probs=231.5
Q ss_pred hhhHHhhhcCCCcHHHHHHHHHHHHcCCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHH
Q 002521 239 GNKMLDFRKSLPSFKEKERLLQAIARNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERV 318 (913)
Q Consensus 239 ~~~l~~~r~~lP~~~~q~~il~~i~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv 318 (913)
.+.+..+.+.-|...+|.+ +..|.++++||..+..|+|||..+..-++..+-... ....++|+.|||+||.|+.+.+
T Consensus 39 LrgiY~yGfekPS~IQqrA-i~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~~--r~tQ~lilsPTRELa~Qi~~vi 115 (400)
T KOG0328|consen 39 LRGIYAYGFEKPSAIQQRA-IPQILKGRDVIAQAQSGTGKTATFSISVLQSLDISV--RETQALILSPTRELAVQIQKVI 115 (400)
T ss_pred HHHHHHhccCCchHHHhhh-hhhhhcccceEEEecCCCCceEEEEeeeeeeccccc--ceeeEEEecChHHHHHHHHHHH
Confidence 3445566677777666555 556679999999999999999777666665442222 2356777789999999998888
Q ss_pred HHHh---CCCcccEeeeEEeccc--cCCCCceEEEEecHHHHHHHhcCC-CCCCceEEEeccccccCcchHHHHHHHHHh
Q 002521 319 SAER---GEPLGETVGYKVRLEG--MKGKNTHLLFCTSGILLRRLLSDH-NLNGVTHVFVDEIHERGMNEDFLLIVLKDL 392 (913)
Q Consensus 319 ~~~~---~~~~g~~vGy~v~~e~--~~~~~~~Ivv~T~g~Ll~~l~~~~-~L~~~s~IIIDEaHer~~~~d~ll~llk~l 392 (913)
...- +..+...+|-..-.+. ....+.+++.+|||++++++.... ....+.++|+||++|+ ++..|-..+....
T Consensus 116 ~alg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr~~L~tr~vkmlVLDEaDem-L~kgfk~Qiydiy 194 (400)
T KOG0328|consen 116 LALGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRSLRTRAVKMLVLDEADEM-LNKGFKEQIYDIY 194 (400)
T ss_pred HHhcccccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHhccccccceeEEEeccHHHH-HHhhHHHHHHHHH
Confidence 6632 2222122221111111 122457999999999999997655 6788999999999975 2223333333333
Q ss_pred CccCccceEEEeccccCHHHHH---hhhCCCCeeccCCccccceeeehhhHHhhhcccccccccccchhhhhHHHHhhhh
Q 002521 393 LPRRRDLRLILMSATLNAELFS---NYFGGAPTIHIPGFTYPVQAHFLEDVLEMTGYKLTSLNQVDDYGQEKLWKTQRQL 469 (913)
Q Consensus 393 l~~~~~~kiIlmSATl~~~~~~---~yf~~~~~i~i~g~~~pv~~~yl~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (913)
....|+.|++++|||++.+.+. .|..++-.+.+.....+.
T Consensus 195 r~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrdeltl------------------------------------- 237 (400)
T KOG0328|consen 195 RYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILVKRDELTL------------------------------------- 237 (400)
T ss_pred HhCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEEecCCCch-------------------------------------
Confidence 3345789999999999876433 333332222221100000
Q ss_pred chhhhhhhHHHHHHHHHhhccccccchhhhhhhccccccccchhhHHHHHHHHhhhcCCCcEEEEcCChHHHHHHHHHHH
Q 002521 470 LPRKRKNQITALVEDALHKSNFENYSSRARDSLASWTADCIGFNLIEAVLCHICRKECPGAVLVFMTGWEDISCLRDQLK 549 (913)
Q Consensus 470 ~~~~~~~~i~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~li~~ll~~i~~~~~~g~iLVF~~~~~~i~~l~~~L~ 549 (913)
+.+.++....-.-+.+...+|.+.....-...+|||+|+..+..+.+.++
T Consensus 238 ------------------------------EgIKqf~v~ve~EewKfdtLcdLYd~LtItQavIFcnTk~kVdwLtekm~ 287 (400)
T KOG0328|consen 238 ------------------------------EGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMR 287 (400)
T ss_pred ------------------------------hhhhhheeeechhhhhHhHHHHHhhhhehheEEEEecccchhhHHHHHHH
Confidence 00011111111122334456666666666779999999999999999999
Q ss_pred cCCCCCCCCCeEEEEecCCCChHHHHHHhccCCCCccEEEEecchhhhcCCCCCeEEEEeCCCCcceeecCCCCCCcCCc
Q 002521 550 SHPLLGDPNRVLLLTCHGSMPTSEQKFIFEKAPPNIRKIVLATNMAEASITINDIVFVVDCGKAKETTYDALNNTPCLLP 629 (913)
Q Consensus 550 ~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~g~~kVLVATniae~GIdIp~v~~VId~g~~k~~~yd~~~~~~~l~~ 629 (913)
.. ++.|..+||+|+++||.+++..|++|+.+||++|++-++|||+|.|.+|||+++|.
T Consensus 288 ~~-------nftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv~qVslviNYDLP~--------------- 345 (400)
T KOG0328|consen 288 EA-------NFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGIDVQQVSLVINYDLPN--------------- 345 (400)
T ss_pred hh-------CceeeeccCCcchhHHHHHHHHhhcCCceEEEEechhhccCCcceeEEEEecCCCc---------------
Confidence 86 78999999999999999999999999999999999999999999999999966554
Q ss_pred cccCHhhHHHHhcccCCC-CCcEEEEecChhhHHhhh
Q 002521 630 SWISQASARQRRGRAGRV-QPGQCYHLYPRCVYEAFA 665 (913)
Q Consensus 630 ~~iSka~~~QR~GRAGR~-~~G~c~~L~t~~~~~~l~ 665 (913)
.+..|+||+||.||. +.|.++.+...++...+.
T Consensus 346 ---nre~YIHRIGRSGRFGRkGvainFVk~~d~~~lr 379 (400)
T KOG0328|consen 346 ---NRELYIHRIGRSGRFGRKGVAINFVKSDDLRILR 379 (400)
T ss_pred ---cHHHHhhhhccccccCCcceEEEEecHHHHHHHH
Confidence 345888999999999 899999999988765543
No 45
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3e-33 Score=305.15 Aligned_cols=363 Identities=20% Similarity=0.247 Sum_probs=236.1
Q ss_pred HHHHHHHHHHHHcCCeEEEEcCCCchHHhHHHHHHHHHHHHh------CCCCceEEEEcchhHHHHHHHHHHHHHHhCCC
Q 002521 252 FKEKERLLQAIARNQVIVISGETGCGKTTQLPQYILESEIES------GRGAFCNIICTQPRRISAMAVSERVSAERGEP 325 (913)
Q Consensus 252 ~~~q~~il~~i~~~~~vII~apTGSGKTt~~~~~ile~~~~~------~~~~~~~Ilv~qPrr~La~qva~rv~~~~~~~ 325 (913)
...|.+.++.|.++++++|-++||||||+++.++|.+.+... ..|..+.||+ |||+||.|+++.+.+.....
T Consensus 161 TsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~ALViv--PTREL~~Q~y~~~qKLl~~~ 238 (708)
T KOG0348|consen 161 TSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPYALVIV--PTRELALQIYETVQKLLKPF 238 (708)
T ss_pred chHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCceEEEEe--chHHHHHHHHHHHHHHhcCc
Confidence 466778888888999999999999999999999999988642 3455555555 99999999999999977653
Q ss_pred cccEeeeEEeccccCC------CCceEEEEecHHHHHHHhcCC--CCCCceEEEecccc---ccCcchHHHHHH--HHHh
Q 002521 326 LGETVGYKVRLEGMKG------KNTHLLFCTSGILLRRLLSDH--NLNGVTHVFVDEIH---ERGMNEDFLLIV--LKDL 392 (913)
Q Consensus 326 ~g~~vGy~v~~e~~~~------~~~~Ivv~T~g~Ll~~l~~~~--~L~~~s~IIIDEaH---er~~~~d~ll~l--lk~l 392 (913)
--..-|+-+..+...+ .+..|+|+|||+|+++|.+.. .++.+.+||+||++ +.|+..|+-.++ +...
T Consensus 239 hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LRwlVlDEaDrlleLGfekdit~Il~~v~~~ 318 (708)
T KOG0348|consen 239 HWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLRWLVLDEADRLLELGFEKDITQILKAVHSI 318 (708)
T ss_pred eEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeeeeeEEEecchhHHHhccchhhHHHHHHHHhhc
Confidence 3333455555665554 467999999999999998766 67889999999999 568877765443 2111
Q ss_pred Cc-------cCccceEEEeccccCH--HHHHhhhC-CCCeeccCCccccceeeehhhHHhhhcccccccccccchhhhhH
Q 002521 393 LP-------RRRDLRLILMSATLNA--ELFSNYFG-GAPTIHIPGFTYPVQAHFLEDVLEMTGYKLTSLNQVDDYGQEKL 462 (913)
Q Consensus 393 l~-------~~~~~kiIlmSATl~~--~~~~~yf~-~~~~i~i~g~~~pv~~~yl~di~~~~~~~~~~~~~~~~~~~~~~ 462 (913)
.. ..+..+-+++|||+.. ..++..-- ++..|. ++......+ +
T Consensus 319 ~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~------------ld~s~~~~~----p------------ 370 (708)
T KOG0348|consen 319 QNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYIS------------LDKSHSQLN----P------------ 370 (708)
T ss_pred cchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeee------------ccchhhhcC----c------------
Confidence 11 1123578999999953 33433211 111111 110000000 0
Q ss_pred HHHhhhhchhhhhhhHHHHHHHHHhhcccccc-chhhhhhhcc-c--cccccchhhHHHHHHHHhhhcCCCcEEEEcCCh
Q 002521 463 WKTQRQLLPRKRKNQITALVEDALHKSNFENY-SSRARDSLAS-W--TADCIGFNLIEAVLCHICRKECPGAVLVFMTGW 538 (913)
Q Consensus 463 ~~~~~~~~~~~~~~~i~~~v~~~l~~~~~~~~-~~~~~~~l~~-~--~~~~~~~~li~~ll~~i~~~~~~g~iLVF~~~~ 538 (913)
....+++......-..+ .....+.+.+ + .+.....--...+|...++.+...+++||+.+.
T Consensus 371 ---------------~~~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~ 435 (708)
T KOG0348|consen 371 ---------------KDKAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCS 435 (708)
T ss_pred ---------------chhhhhhcCCcccccccccccCcHHhhhceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEech
Confidence 00000000000000000 0000000111 0 111111122334566667777777999999999
Q ss_pred HHHHHHHHHHHcCCCC------------C---CCCCeEEEEecCCCChHHHHHHhccCCCCccEEEEecchhhhcCCCCC
Q 002521 539 EDISCLRDQLKSHPLL------------G---DPNRVLLLTCHGSMPTSEQKFIFEKAPPNIRKIVLATNMAEASITIND 603 (913)
Q Consensus 539 ~~i~~l~~~L~~~~~~------------~---~~~~~~v~~lHs~l~~~er~~v~~~f~~g~~kVLVATniae~GIdIp~ 603 (913)
+.++.-++++.....- + -..+..++-+||+|.+++|..+|+.|.....-|++|||||++|+|+|+
T Consensus 436 d~VeFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~ 515 (708)
T KOG0348|consen 436 DSVEFHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPH 515 (708)
T ss_pred hHHHHHHHHHHhhhhcccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCC
Confidence 9999988887652110 0 012457899999999999999999999999999999999999999999
Q ss_pred eEEEEeCCCCcceeecCCCCCCcCCccccCHhhHHHHhcccCCC-CCcEEEEe--cChhhHHhhhhCCCCcccccCh
Q 002521 604 IVFVVDCGKAKETTYDALNNTPCLLPSWISQASARQRRGRAGRV-QPGQCYHL--YPRCVYEAFAEYQLPELLRTPL 677 (913)
Q Consensus 604 v~~VId~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~-~~G~c~~L--~t~~~~~~l~~~~~pEi~r~~L 677 (913)
|.+||. ||++. |.++|+||+||+.|. +.|....+ -++.+|-.......+-++.-++
T Consensus 516 V~~vVQ--------Yd~P~----------s~adylHRvGRTARaG~kG~alLfL~P~Eaey~~~l~~~~~~l~q~~~ 574 (708)
T KOG0348|consen 516 VGLVVQ--------YDPPF----------STADYLHRVGRTARAGEKGEALLFLLPSEAEYVNYLKKHHIMLLQFDM 574 (708)
T ss_pred cCeEEE--------eCCCC----------CHHHHHHHhhhhhhccCCCceEEEecccHHHHHHHHHhhcchhhccch
Confidence 999999 55543 778999999999998 56665554 4455565544444333333333
No 46
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.4e-34 Score=316.45 Aligned_cols=352 Identities=20% Similarity=0.211 Sum_probs=224.2
Q ss_pred hhhHHhhhcCCCcHHHHHHHHHHHHcCCeEEEEcCCCchHHhHHHHHHHHHHHH---------h--CCCCceEEEEcchh
Q 002521 239 GNKMLDFRKSLPSFKEKERLLQAIARNQVIVISGETGCGKTTQLPQYILESEIE---------S--GRGAFCNIICTQPR 307 (913)
Q Consensus 239 ~~~l~~~r~~lP~~~~q~~il~~i~~~~~vII~apTGSGKTt~~~~~ile~~~~---------~--~~~~~~~Ilv~qPr 307 (913)
.+.+....+.-|...|...+..++....+|+-.|+||||||++|.++|++.+.. + .++.+..-+|+.||
T Consensus 193 L~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~~k~~k~~~LV~tPT 272 (731)
T KOG0347|consen 193 LRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTSAKYVKPIALVVTPT 272 (731)
T ss_pred HHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhhHHhccCcceeEEecCh
Confidence 344445556667655555555555555899999999999999999999994432 2 23334346677799
Q ss_pred HHHHHHHHHHHHHHhC---CCcccEee-eEE-eccccCCCCceEEEEecHHHHHHHhcCC----CCCCceEEEecccccc
Q 002521 308 RISAMAVSERVSAERG---EPLGETVG-YKV-RLEGMKGKNTHLLFCTSGILLRRLLSDH----NLNGVTHVFVDEIHER 378 (913)
Q Consensus 308 r~La~qva~rv~~~~~---~~~g~~vG-y~v-~~e~~~~~~~~Ivv~T~g~Ll~~l~~~~----~L~~~s~IIIDEaHer 378 (913)
|+||.|+.+.+..... ..+...+| ..+ ..+...+..++|+|+|||+|+.++..+. .+.+++++||||++.+
T Consensus 273 RELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l~~~k~vkcLVlDEaDRm 352 (731)
T KOG0347|consen 273 RELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHLGNFKKVKCLVLDEADRM 352 (731)
T ss_pred HHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhhhhhhhceEEEEccHHHH
Confidence 9999999998866332 22222222 111 1234455678999999999999997665 6889999999999943
Q ss_pred ---CcchHHHHHHHHHhC--ccCccceEEEeccccCHHHHHhhhCCCCeeccCCccccceeeehhhHHhhhccccccccc
Q 002521 379 ---GMNEDFLLIVLKDLL--PRRRDLRLILMSATLNAELFSNYFGGAPTIHIPGFTYPVQAHFLEDVLEMTGYKLTSLNQ 453 (913)
Q Consensus 379 ---~~~~d~ll~llk~ll--~~~~~~kiIlmSATl~~~~~~~yf~~~~~i~i~g~~~pv~~~yl~di~~~~~~~~~~~~~ 453 (913)
|... -+..+|+.+. +.++..|.+++|||++-..+...-... ...++.-.+ ..-++.++..+|+.-.+ .
T Consensus 353 vekghF~-Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~---k~~~k~~~~-~~kiq~Lmk~ig~~~kp--k 425 (731)
T KOG0347|consen 353 VEKGHFE-ELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSR---KKKDKEDEL-NAKIQHLMKKIGFRGKP--K 425 (731)
T ss_pred hhhccHH-HHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhh---hccchhhhh-hHHHHHHHHHhCccCCC--e
Confidence 3333 3344455544 244567999999998643221100000 000000000 00011111111211111 0
Q ss_pred ccchhhhhHHHHhhhhchhhhhhhHH-HHHHHHHhhccccccchhhhhhhccccccccchhhHHHHHHHHhhhcCCCcEE
Q 002521 454 VDDYGQEKLWKTQRQLLPRKRKNQIT-ALVEDALHKSNFENYSSRARDSLASWTADCIGFNLIEAVLCHICRKECPGAVL 532 (913)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~~i~-~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~li~~ll~~i~~~~~~g~iL 532 (913)
+.| ........ .+.+..+. +.+..-+ +-++++-..-+|++|
T Consensus 426 iiD---------------~t~q~~ta~~l~Es~I~-----------------C~~~eKD------~ylyYfl~ryPGrTl 467 (731)
T KOG0347|consen 426 IID---------------LTPQSATASTLTESLIE-----------------CPPLEKD------LYLYYFLTRYPGRTL 467 (731)
T ss_pred eEe---------------cCcchhHHHHHHHHhhc-----------------CCccccc------eeEEEEEeecCCceE
Confidence 000 00000011 11111111 0111111 111222234589999
Q ss_pred EEcCChHHHHHHHHHHHcCCCCCCCCCeEEEEecCCCChHHHHHHhccCCCCccEEEEecchhhhcCCCCCeEEEEeCCC
Q 002521 533 VFMTGWEDISCLRDQLKSHPLLGDPNRVLLLTCHGSMPTSEQKFIFEKAPPNIRKIVLATNMAEASITINDIVFVVDCGK 612 (913)
Q Consensus 533 VF~~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~g~~kVLVATniae~GIdIp~v~~VId~g~ 612 (913)
||||+++.+.+++-+|... ++..+++|+.|.+.+|.+.++.|++..-.||||||||++|+|||+|.+||++-.
T Consensus 468 VF~NsId~vKRLt~~L~~L-------~i~p~~LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqV 540 (731)
T KOG0347|consen 468 VFCNSIDCVKRLTVLLNNL-------DIPPLPLHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQV 540 (731)
T ss_pred EEechHHHHHHHHHHHhhc-------CCCCchhhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEEeec
Confidence 9999999999999999986 677889999999999999999999999999999999999999999999999666
Q ss_pred CcceeecCCCCCCcCCccccCHhhHHHHhcccCCC-CCcEEEEecChhh
Q 002521 613 AKETTYDALNNTPCLLPSWISQASARQRRGRAGRV-QPGQCYHLYPRCV 660 (913)
Q Consensus 613 ~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~-~~G~c~~L~t~~~ 660 (913)
|+ +-..|+||.||+.|. ..|....|+....
T Consensus 541 Pr------------------tseiYVHRSGRTARA~~~Gvsvml~~P~e 571 (731)
T KOG0347|consen 541 PR------------------TSEIYVHRSGRTARANSEGVSVMLCGPQE 571 (731)
T ss_pred CC------------------ccceeEecccccccccCCCeEEEEeChHH
Confidence 66 333666999999999 7899999988754
No 47
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.9e-33 Score=289.54 Aligned_cols=325 Identities=20% Similarity=0.206 Sum_probs=232.0
Q ss_pred hhhhHHhhhcCCCcHHHHHHHHHHHHcCCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHH
Q 002521 238 EGNKMLDFRKSLPSFKEKERLLQAIARNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSER 317 (913)
Q Consensus 238 ~~~~l~~~r~~lP~~~~q~~il~~i~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~r 317 (913)
....+++..+..|.. .|++.++....+++++.-|..|+|||-++.+++++.+-.....-++.|+| |||+||.|+.+.
T Consensus 96 LLmgIfe~G~ekPSP-iQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~~~~IQ~~ilV--PtrelALQtSqv 172 (459)
T KOG0326|consen 96 LLMGIFEKGFEKPSP-IQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDPKKNVIQAIILV--PTRELALQTSQV 172 (459)
T ss_pred HHHHHHHhccCCCCC-ccccccceeecchhhhhhccCCCCCccceechhhhhcCccccceeEEEEe--ecchhhHHHHHH
Confidence 344556666666653 37777888889999999999999999999999999875444444556666 999999997654
Q ss_pred HHHHhCCCccc----EeeeEE-ecccc-CCCCceEEEEecHHHHHHHhcCC-CCCCceEEEeccccccCcchHHHHHHHH
Q 002521 318 VSAERGEPLGE----TVGYKV-RLEGM-KGKNTHLLFCTSGILLRRLLSDH-NLNGVTHVFVDEIHERGMNEDFLLIVLK 390 (913)
Q Consensus 318 v~~~~~~~~g~----~vGy~v-~~e~~-~~~~~~Ivv~T~g~Ll~~l~~~~-~L~~~s~IIIDEaHer~~~~d~ll~llk 390 (913)
+ ++++..+|. .+|-.. +.+-. .+...+++|+|||+++++....- .+++...+|+|||+.. +..||-..+-+
T Consensus 173 c-~~lskh~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEADKl-Ls~~F~~~~e~ 250 (459)
T KOG0326|consen 173 C-KELSKHLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEADKL-LSVDFQPIVEK 250 (459)
T ss_pred H-HHHhcccCeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhcccccchhceEEEechhhhh-hchhhhhHHHH
Confidence 4 444433333 233211 11111 23567999999999999987665 8999999999999954 55566555433
Q ss_pred HhCccCccceEEEeccccCHH--HH-HhhhCCCCeeccCCccccceeeehhhHHhhhcccccccccccchhhhhHHHHhh
Q 002521 391 DLLPRRRDLRLILMSATLNAE--LF-SNYFGGAPTIHIPGFTYPVQAHFLEDVLEMTGYKLTSLNQVDDYGQEKLWKTQR 467 (913)
Q Consensus 391 ~ll~~~~~~kiIlmSATl~~~--~~-~~yf~~~~~i~i~g~~~pv~~~yl~di~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (913)
.+.-..++.|+++.|||.+-. .| .+|+.++-.|. .+++.- +.|
T Consensus 251 li~~lP~~rQillySATFP~tVk~Fm~~~l~kPy~IN-----------LM~eLt-l~G---------------------- 296 (459)
T KOG0326|consen 251 LISFLPKERQILLYSATFPLTVKGFMDRHLKKPYEIN-----------LMEELT-LKG---------------------- 296 (459)
T ss_pred HHHhCCccceeeEEecccchhHHHHHHHhccCcceee-----------hhhhhh-hcc----------------------
Confidence 333344556999999998642 22 23443322222 221100 000
Q ss_pred hhchhhhhhhHHHHHHHHHhhccccccchhhhhhhccccccccchhhHHHHHHHHhhhcCCCcEEEEcCChHHHHHHHHH
Q 002521 468 QLLPRKRKNQITALVEDALHKSNFENYSSRARDSLASWTADCIGFNLIEAVLCHICRKECPGAVLVFMTGWEDISCLRDQ 547 (913)
Q Consensus 468 ~~~~~~~~~~i~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~li~~ll~~i~~~~~~g~iLVF~~~~~~i~~l~~~ 547 (913)
-.+...+++ ...+...+..++.+..-...+|||++...++.++..
T Consensus 297 -------vtQyYafV~----------------------------e~qKvhCLntLfskLqINQsIIFCNS~~rVELLAkK 341 (459)
T KOG0326|consen 297 -------VTQYYAFVE----------------------------ERQKVHCLNTLFSKLQINQSIIFCNSTNRVELLAKK 341 (459)
T ss_pred -------hhhheeeec----------------------------hhhhhhhHHHHHHHhcccceEEEeccchHhHHHHHH
Confidence 000001111 111223344555555667799999999999999999
Q ss_pred HHcCCCCCCCCCeEEEEecCCCChHHHHHHhccCCCCccEEEEecchhhhcCCCCCeEEEEeCCCCcceeecCCCCCCcC
Q 002521 548 LKSHPLLGDPNRVLLLTCHGSMPTSEQKFIFEKAPPNIRKIVLATNMAEASITINDIVFVVDCGKAKETTYDALNNTPCL 627 (913)
Q Consensus 548 L~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~g~~kVLVATniae~GIdIp~v~~VId~g~~k~~~yd~~~~~~~l 627 (913)
+.+. ++.+..+|+.|.++.|.+||..|++|.++.+||||.+.+||||++|++|||+++||
T Consensus 342 ITel-------GyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvVINFDfpk------------- 401 (459)
T KOG0326|consen 342 ITEL-------GYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVVINFDFPK------------- 401 (459)
T ss_pred HHhc-------cchhhHHHHHHHHhhhhhhhhhhhccccceeeehhhhhcccccceeeEEEecCCCC-------------
Confidence 9986 88999999999999999999999999999999999999999999999999988888
Q ss_pred CccccCHhhHHHHhcccCCC-CCcEEEEecChhhH
Q 002521 628 LPSWISQASARQRRGRAGRV-QPGQCYHLYPRCVY 661 (913)
Q Consensus 628 ~~~~iSka~~~QR~GRAGR~-~~G~c~~L~t~~~~ 661 (913)
+.++|.||+||+||. ..|.++.|.+-++.
T Consensus 402 -----~aEtYLHRIGRsGRFGhlGlAInLityedr 431 (459)
T KOG0326|consen 402 -----NAETYLHRIGRSGRFGHLGLAINLITYEDR 431 (459)
T ss_pred -----CHHHHHHHccCCccCCCcceEEEEEehhhh
Confidence 556899999999999 68999999885543
No 48
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=1.7e-32 Score=329.19 Aligned_cols=302 Identities=20% Similarity=0.196 Sum_probs=209.9
Q ss_pred HHHHHHHHHHHHcCCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHHHHHhCCCcccEee
Q 002521 252 FKEKERLLQAIARNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVSAERGEPLGETVG 331 (913)
Q Consensus 252 ~~~q~~il~~i~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv~~~~~~~~g~~vG 331 (913)
.+.|.++++++..++++++++|||+|||+++.++++.. + ..++|+.|+++|+.|..+.+.. .|.. +.
T Consensus 15 r~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~------~--g~~lVisPl~sL~~dq~~~l~~-~gi~----~~ 81 (591)
T TIGR01389 15 RPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLL------K--GLTVVISPLISLMKDQVDQLRA-AGVA----AA 81 (591)
T ss_pred CHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHc------C--CcEEEEcCCHHHHHHHHHHHHH-cCCc----EE
Confidence 46799999999999999999999999999998887631 1 2355566999999999888865 3332 22
Q ss_pred eEEe----------ccccCCCCceEEEEecHHHHHHH-hcCCCCCCceEEEeccccccCcc-hHHH--HHHHHHhCccCc
Q 002521 332 YKVR----------LEGMKGKNTHLLFCTSGILLRRL-LSDHNLNGVTHVFVDEIHERGMN-EDFL--LIVLKDLLPRRR 397 (913)
Q Consensus 332 y~v~----------~e~~~~~~~~Ivv~T~g~Ll~~l-~~~~~L~~~s~IIIDEaHer~~~-~d~l--l~llk~ll~~~~ 397 (913)
+-.. .........+|+|+||+.|.... .......++++|||||||..+-. .|+- ...+..+....+
T Consensus 82 ~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~frp~y~~l~~l~~~~~ 161 (591)
T TIGR01389 82 YLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFRPEYQRLGSLAERFP 161 (591)
T ss_pred EEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCccHHHHHHHHHHHHhCC
Confidence 2111 01123356799999999986422 22224568999999999964321 1221 112223333445
Q ss_pred cceEEEeccccCHHH---HHhhhCC-CCeeccCCccccceeeehhhHHhhhcccccccccccchhhhhHHHHhhhhchhh
Q 002521 398 DLRLILMSATLNAEL---FSNYFGG-APTIHIPGFTYPVQAHFLEDVLEMTGYKLTSLNQVDDYGQEKLWKTQRQLLPRK 473 (913)
Q Consensus 398 ~~kiIlmSATl~~~~---~~~yf~~-~~~i~i~g~~~pv~~~yl~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (913)
+.++|++|||++... +..+++- .+...+.+...| ...|.. . .
T Consensus 162 ~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~-nl~~~v----------~-----------------------~ 207 (591)
T TIGR01389 162 QVPRIALTATADAETRQDIRELLRLADANEFITSFDRP-NLRFSV----------V-----------------------K 207 (591)
T ss_pred CCCEEEEEeCCCHHHHHHHHHHcCCCCCCeEecCCCCC-CcEEEE----------E-----------------------e
Confidence 556999999997653 4444431 111111111101 000000 0 0
Q ss_pred hhhhHHHHHHHHHhhccccccchhhhhhhccccccccchhhHHHHHHHHhhhcCCCcEEEEcCChHHHHHHHHHHHcCCC
Q 002521 474 RKNQITALVEDALHKSNFENYSSRARDSLASWTADCIGFNLIEAVLCHICRKECPGAVLVFMTGWEDISCLRDQLKSHPL 553 (913)
Q Consensus 474 ~~~~i~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~li~~ll~~i~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~ 553 (913)
..+.... +..+.....++++||||+++++++.+++.|...
T Consensus 208 -------------------------------------~~~~~~~-l~~~l~~~~~~~~IIf~~sr~~~e~la~~L~~~-- 247 (591)
T TIGR01389 208 -------------------------------------KNNKQKF-LLDYLKKHRGQSGIIYASSRKKVEELAERLESQ-- 247 (591)
T ss_pred -------------------------------------CCCHHHH-HHHHHHhcCCCCEEEEECcHHHHHHHHHHHHhC--
Confidence 0000011 112222233678999999999999999999875
Q ss_pred CCCCCCeEEEEecCCCChHHHHHHhccCCCCccEEEEecchhhhcCCCCCeEEEEeCCCCcceeecCCCCCCcCCccccC
Q 002521 554 LGDPNRVLLLTCHGSMPTSEQKFIFEKAPPNIRKIVLATNMAEASITINDIVFVVDCGKAKETTYDALNNTPCLLPSWIS 633 (913)
Q Consensus 554 ~~~~~~~~v~~lHs~l~~~er~~v~~~f~~g~~kVLVATniae~GIdIp~v~~VId~g~~k~~~yd~~~~~~~l~~~~iS 633 (913)
++.+..+||+|+.++|..+++.|.+|..+|||||+++++|||+|+|++||+++.|+ |
T Consensus 248 -----g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~~~~p~------------------s 304 (591)
T TIGR01389 248 -----GISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIHYDMPG------------------N 304 (591)
T ss_pred -----CCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEEcCCCC------------------C
Confidence 67789999999999999999999999999999999999999999999999977766 6
Q ss_pred HhhHHHHhcccCCC-CCcEEEEecChhhHHh
Q 002521 634 QASARQRRGRAGRV-QPGQCYHLYPRCVYEA 663 (913)
Q Consensus 634 ka~~~QR~GRAGR~-~~G~c~~L~t~~~~~~ 663 (913)
..+|.||+|||||. .+|.|+.+|+..++..
T Consensus 305 ~~~y~Q~~GRaGR~G~~~~~il~~~~~d~~~ 335 (591)
T TIGR01389 305 LESYYQEAGRAGRDGLPAEAILLYSPADIAL 335 (591)
T ss_pred HHHHhhhhccccCCCCCceEEEecCHHHHHH
Confidence 77899999999998 5899999999887653
No 49
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=3.8e-32 Score=322.10 Aligned_cols=386 Identities=22% Similarity=0.242 Sum_probs=266.8
Q ss_pred hhhhHHhhhcCCCcHHHHHHHHHHHHcCCeEEEEcCCCchHHhHHHHHHHHHHHHhCCC---CceEEEEcchhHHHHHHH
Q 002521 238 EGNKMLDFRKSLPSFKEKERLLQAIARNQVIVISGETGCGKTTQLPQYILESEIESGRG---AFCNIICTQPRRISAMAV 314 (913)
Q Consensus 238 ~~~~l~~~r~~lP~~~~q~~il~~i~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~---~~~~Ilv~qPrr~La~qv 314 (913)
..++.+..+..-|. +.|.++++.+.+|++++|+||||||||.++.++++..+...+.+ ....++++.|.|+|+..+
T Consensus 11 ~v~~~~~~~~~~~t-~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn~Di 89 (814)
T COG1201 11 RVREWFKRKFTSLT-PPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALNNDI 89 (814)
T ss_pred HHHHHHHHhcCCCC-HHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHHHHH
Confidence 34444444444343 55788899999999999999999999999999999999877422 247889999999999999
Q ss_pred HHHHHH---HhCCCcccEeeeEEeccc--cCCCCceEEEEecHHHHHHHhcCC---CCCCceEEEeccccc-----cCcc
Q 002521 315 SERVSA---ERGEPLGETVGYKVRLEG--MKGKNTHLLFCTSGILLRRLLSDH---NLNGVTHVFVDEIHE-----RGMN 381 (913)
Q Consensus 315 a~rv~~---~~~~~~g~~vGy~v~~e~--~~~~~~~Ivv~T~g~Ll~~l~~~~---~L~~~s~IIIDEaHe-----r~~~ 381 (913)
-.++.. ++|..+....|...+.+. +....++|+++||+.|.-++.+.. .|.++.+|||||+|+ ||..
T Consensus 90 ~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~sKRG~~ 169 (814)
T COG1201 90 RRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAESKRGVQ 169 (814)
T ss_pred HHHHHHHHHHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhccccchh
Confidence 988854 345555444443333222 233568999999999988776543 799999999999994 7877
Q ss_pred hHHHHHHHHHhCccCccceEEEecccc-CHHHHHhhhCCC----CeeccCCc-cccceeeehhhHHhhhccccccccccc
Q 002521 382 EDFLLIVLKDLLPRRRDLRLILMSATL-NAELFSNYFGGA----PTIHIPGF-TYPVQAHFLEDVLEMTGYKLTSLNQVD 455 (913)
Q Consensus 382 ~d~ll~llk~ll~~~~~~kiIlmSATl-~~~~~~~yf~~~----~~i~i~g~-~~pv~~~yl~di~~~~~~~~~~~~~~~ 455 (913)
..+.+..|+.+.. ++|.|++|||+ +++..++|+.+. .++.+.+. ...+++.....- ..
T Consensus 170 Lsl~LeRL~~l~~---~~qRIGLSATV~~~~~varfL~g~~~~~~Iv~~~~~k~~~i~v~~p~~~-------------~~ 233 (814)
T COG1201 170 LALSLERLRELAG---DFQRIGLSATVGPPEEVAKFLVGFGDPCEIVDVSAAKKLEIKVISPVED-------------LI 233 (814)
T ss_pred hhhhHHHHHhhCc---ccEEEeehhccCCHHHHHHHhcCCCCceEEEEcccCCcceEEEEecCCc-------------cc
Confidence 7777777766665 78999999999 788999999754 34444332 222222221110 00
Q ss_pred chhhhhHHHHhhhhchhhhhhhHHHHHHHHHhhccccccchhhhhhhccccccccchhhHHHHHHHHhhhcCCCcEEEEc
Q 002521 456 DYGQEKLWKTQRQLLPRKRKNQITALVEDALHKSNFENYSSRARDSLASWTADCIGFNLIEAVLCHICRKECPGAVLVFM 535 (913)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~i~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~li~~ll~~i~~~~~~g~iLVF~ 535 (913)
.. +..| ......+..+.++ ...+|||+
T Consensus 234 ~~--~~~~-------------------------------------------------~~~~~~i~~~v~~--~~ttLIF~ 260 (814)
T COG1201 234 YD--EELW-------------------------------------------------AALYERIAELVKK--HRTTLIFT 260 (814)
T ss_pred cc--cchh-------------------------------------------------HHHHHHHHHHHhh--cCcEEEEE
Confidence 00 0000 0001112222222 34799999
Q ss_pred CChHHHHHHHHHHHcCCCCCCCCCeEEEEecCCCChHHHHHHhccCCCCccEEEEecchhhhcCCCCCeEEEEeCCCCcc
Q 002521 536 TGWEDISCLRDQLKSHPLLGDPNRVLLLTCHGSMPTSEQKFIFEKAPPNIRKIVLATNMAEASITINDIVFVVDCGKAKE 615 (913)
Q Consensus 536 ~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~g~~kVLVATniae~GIdIp~v~~VId~g~~k~ 615 (913)
||+..++.++..|.... ...+..|||+++.++|..+.+.|++|..+++|||+.+|-||||.+|+.||+.+-|+
T Consensus 261 NTR~~aE~l~~~L~~~~------~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELGIDiG~vdlVIq~~SP~- 333 (814)
T COG1201 261 NTRSGAERLAFRLKKLG------PDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELGIDIGDIDLVIQLGSPK- 333 (814)
T ss_pred eChHHHHHHHHHHHHhc------CCceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhccccCCceEEEEeCCcH-
Confidence 99999999999999862 26789999999999999999999999999999999999999999999999977777
Q ss_pred eeecCCCCCCcCCccccCHhhHHHHhcccCCC----CCcEEEEecChhhHHhh--------hhCCCCcccccChhhHHHH
Q 002521 616 TTYDALNNTPCLLPSWISQASARQRRGRAGRV----QPGQCYHLYPRCVYEAF--------AEYQLPELLRTPLNSLCLQ 683 (913)
Q Consensus 616 ~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~----~~G~c~~L~t~~~~~~l--------~~~~~pEi~r~~L~~~~L~ 683 (913)
|.+.+.||+||+|+. ..|..|.....+..++. .....+++...+|+-+.-+
T Consensus 334 -----------------sV~r~lQRiGRsgHr~~~~Skg~ii~~~r~dllE~~vi~~~a~~g~le~~~i~~~~LDVLaq~ 396 (814)
T COG1201 334 -----------------SVNRFLQRIGRAGHRLGEVSKGIIIAEDRDDLLECLVLADLALEGKLERIKIPKNPLDVLAQQ 396 (814)
T ss_pred -----------------HHHHHhHhccccccccCCcccEEEEecCHHHHHHHHHHHHHHHhCCcccCCCCCcchhHHHHH
Confidence 777888999999987 33544444422222221 1123466777788766666
Q ss_pred HhhcCC------CCHHHHHHhcc--CCCchHHHHHHHHHHHH
Q 002521 684 IKSLQV------GSIGEFLSAAL--QPPEPLAVQNAVDFLKR 717 (913)
Q Consensus 684 lk~l~~------~~~~~fl~~~l--~pP~~~~i~~al~~L~~ 717 (913)
+-.+-+ +....++.++- ..-+.+.+.+.++.|..
T Consensus 397 ivg~~~~~~~~~~~~y~~vrraypy~~L~~e~f~~v~~~l~~ 438 (814)
T COG1201 397 IVGMALEKVWEVEEAYRVVRRAYPYADLSREDFRLVLRYLAG 438 (814)
T ss_pred HHHHHhhCcCCHHHHHHHHHhccccccCCHHHHHHHHHHHhh
Confidence 544322 22222222211 11244667888888877
No 50
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.5e-33 Score=306.68 Aligned_cols=311 Identities=18% Similarity=0.222 Sum_probs=220.0
Q ss_pred HHHHHHHHHHHcCCeEEEEcCCCchHHhHHHHHHHHHHHHhCC--------CCceEEEEcchhHHHHHHHHHHHHHHhCC
Q 002521 253 KEKERLLQAIARNQVIVISGETGCGKTTQLPQYILESEIESGR--------GAFCNIICTQPRRISAMAVSERVSAERGE 324 (913)
Q Consensus 253 ~~q~~il~~i~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~--------~~~~~Ilv~qPrr~La~qva~rv~~~~~~ 324 (913)
++|+-.++.+..+++++++|+||||||.++++++++.++..+. +....++++.|||+||.|++++..+..+.
T Consensus 99 pvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~nea~k~~~~ 178 (482)
T KOG0335|consen 99 PVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQIYNEARKFSYL 178 (482)
T ss_pred cceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhHHHHHHHhhccc
Confidence 3477788999999999999999999999999999999876432 11234555559999999999999887654
Q ss_pred Cc-ccEeeeEEe----ccccCCCCceEEEEecHHHHHHHhcCC-CCCCceEEEeccccc----cCcchHHHHHHHHHhCc
Q 002521 325 PL-GETVGYKVR----LEGMKGKNTHLLFCTSGILLRRLLSDH-NLNGVTHVFVDEIHE----RGMNEDFLLIVLKDLLP 394 (913)
Q Consensus 325 ~~-g~~vGy~v~----~e~~~~~~~~Ivv~T~g~Ll~~l~~~~-~L~~~s~IIIDEaHe----r~~~~d~ll~llk~ll~ 394 (913)
.. -..+.|.-+ ........++|+|||||.|.+.+.... .|.++.++|+|||+. +++..++-.++...-..
T Consensus 179 s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g~i~l~~~k~~vLDEADrMlD~mgF~p~Ir~iv~~~~~~ 258 (482)
T KOG0335|consen 179 SGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERGKISLDNCKFLVLDEADRMLDEMGFEPQIRKIVEQLGMP 258 (482)
T ss_pred ccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhcceeehhhCcEEEecchHHhhhhccccccHHHHhcccCCC
Confidence 32 222333321 111223569999999999999997766 899999999999994 34444443333222222
Q ss_pred cCccceEEEeccccCHH--HHHhhhCCC--CeeccC--CccccceeeehhhHHhhhcccccccccccchhhhhHHHHhhh
Q 002521 395 RRRDLRLILMSATLNAE--LFSNYFGGA--PTIHIP--GFTYPVQAHFLEDVLEMTGYKLTSLNQVDDYGQEKLWKTQRQ 468 (913)
Q Consensus 395 ~~~~~kiIlmSATl~~~--~~~~yf~~~--~~i~i~--g~~~pv~~~yl~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (913)
.....|.+++|||.+.+ .+..+|-.. -.+.|. |..
T Consensus 259 ~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rvg~~--------------------------------------- 299 (482)
T KOG0335|consen 259 PKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRVGST--------------------------------------- 299 (482)
T ss_pred CccceeEEEEeccCChhhhhhHHHHhhccceEEEEeeeccc---------------------------------------
Confidence 33467999999998654 344444211 111110 000
Q ss_pred hchhhhhhhHHHHHHHHHhhccccccchhhhhhhccccccccchhhHHHHHHHHhhhc---CCC-----cEEEEcCChHH
Q 002521 469 LLPRKRKNQITALVEDALHKSNFENYSSRARDSLASWTADCIGFNLIEAVLCHICRKE---CPG-----AVLVFMTGWED 540 (913)
Q Consensus 469 ~~~~~~~~~i~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~li~~ll~~i~~~~---~~g-----~iLVF~~~~~~ 540 (913)
.+.+.+....+...+++.+++..+.... ..+ .++|||.+++.
T Consensus 300 ------------------------------~~ni~q~i~~V~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~ 349 (482)
T KOG0335|consen 300 ------------------------------SENITQKILFVNEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRG 349 (482)
T ss_pred ------------------------------cccceeEeeeecchhhHHHHHHHhhcccCCcccCCcccceEEEEeeccch
Confidence 0000011111112222333333332221 233 79999999999
Q ss_pred HHHHHHHHHcCCCCCCCCCeEEEEecCCCChHHHHHHhccCCCCccEEEEecchhhhcCCCCCeEEEEeCCCCcceeecC
Q 002521 541 ISCLRDQLKSHPLLGDPNRVLLLTCHGSMPTSEQKFIFEKAPPNIRKIVLATNMAEASITINDIVFVVDCGKAKETTYDA 620 (913)
Q Consensus 541 i~~l~~~L~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~g~~kVLVATniae~GIdIp~v~~VId~g~~k~~~yd~ 620 (913)
+..++..|... ++....+||..++.+|...+..|++|...|+|||+|+++|+|||+|++||++++|.
T Consensus 350 ~d~l~~~l~~~-------~~~~~sIhg~~tq~er~~al~~Fr~g~~pvlVaT~VaaRGlDi~~V~hVInyDmP~------ 416 (482)
T KOG0335|consen 350 ADELAAFLSSN-------GYPAKSIHGDRTQIEREQALNDFRNGKAPVLVATNVAARGLDIPNVKHVINYDMPA------ 416 (482)
T ss_pred hhHHHHHHhcC-------CCCceeecchhhhhHHHHHHHHhhcCCcceEEEehhhhcCCCCCCCceeEEeecCc------
Confidence 99999999986 78889999999999999999999999999999999999999999999999955544
Q ss_pred CCCCCcCCccccCHhhHHHHhcccCCC-CCcEEEEecC
Q 002521 621 LNNTPCLLPSWISQASARQRRGRAGRV-QPGQCYHLYP 657 (913)
Q Consensus 621 ~~~~~~l~~~~iSka~~~QR~GRAGR~-~~G~c~~L~t 657 (913)
... +|+||+||+||. ..|.+..|+.
T Consensus 417 --d~d----------~YvHRIGRTGR~Gn~G~atsf~n 442 (482)
T KOG0335|consen 417 --DID----------DYVHRIGRTGRVGNGGRATSFFN 442 (482)
T ss_pred --chh----------hHHHhccccccCCCCceeEEEec
Confidence 333 677999999999 6799999998
No 51
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=1.9e-32 Score=342.40 Aligned_cols=331 Identities=17% Similarity=0.199 Sum_probs=219.7
Q ss_pred HHHHHHHHHHHHHHHHhhcCchhhhHHhhhcCCCcHHHHHHHHHHHHcC------CeEEEEcCCCchHHhHHHHHHHHHH
Q 002521 217 KVLQRRSLQMRNMQRAWQESPEGNKMLDFRKSLPSFKEKERLLQAIARN------QVIVISGETGCGKTTQLPQYILESE 290 (913)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~lP~~~~q~~il~~i~~~------~~vII~apTGSGKTt~~~~~ile~~ 290 (913)
++++-++.+.......+.....++.-+....++...+.|.++++.+..+ .+++++|+||+|||.++..+++..+
T Consensus 567 ~l~~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~ 646 (1147)
T PRK10689 567 ELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAV 646 (1147)
T ss_pred HHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHH
Confidence 3333344333333222333445555555566666778888888888776 7999999999999998877766543
Q ss_pred HHhCCCCceEEEEcchhHHHHHHHHHHHHHHhCCCcccEeeeEEec----------cccCCCCceEEEEecHHHHHHHhc
Q 002521 291 IESGRGAFCNIICTQPRRISAMAVSERVSAERGEPLGETVGYKVRL----------EGMKGKNTHLLFCTSGILLRRLLS 360 (913)
Q Consensus 291 ~~~~~~~~~~Ilv~qPrr~La~qva~rv~~~~~~~~g~~vGy~v~~----------e~~~~~~~~Ivv~T~g~Ll~~l~~ 360 (913)
. .+. .++|++||++||.|+++.+.+.++. .+..++.-.++ +.......+|+|+||+.+ ..
T Consensus 647 ~---~g~--qvlvLvPT~eLA~Q~~~~f~~~~~~-~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL----~~ 716 (1147)
T PRK10689 647 E---NHK--QVAVLVPTTLLAQQHYDNFRDRFAN-WPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLL----QS 716 (1147)
T ss_pred H---cCC--eEEEEeCcHHHHHHHHHHHHHhhcc-CCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHH----hC
Confidence 2 333 4555559999999999999875543 22223222211 111224679999999744 23
Q ss_pred CCCCCCceEEEeccccccCcchHHHHHHHHHhCccCccceEEEeccccCHHHHHh---hhCCCCeeccCCc-cccceeee
Q 002521 361 DHNLNGVTHVFVDEIHERGMNEDFLLIVLKDLLPRRRDLRLILMSATLNAELFSN---YFGGAPTIHIPGF-TYPVQAHF 436 (913)
Q Consensus 361 ~~~L~~~s~IIIDEaHer~~~~d~ll~llk~ll~~~~~~kiIlmSATl~~~~~~~---yf~~~~~i~i~g~-~~pv~~~y 436 (913)
+..+.++++|||||+|+.++... . .+....++.++++||||+.+..+.- .+.+..++..+.. ..++..++
T Consensus 717 ~v~~~~L~lLVIDEahrfG~~~~---e---~lk~l~~~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~~r~~v~~~~ 790 (1147)
T PRK10689 717 DVKWKDLGLLIVDEEHRFGVRHK---E---RIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFV 790 (1147)
T ss_pred CCCHhhCCEEEEechhhcchhHH---H---HHHhcCCCCcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCCCCCCceEEE
Confidence 34678999999999997765421 1 2222345779999999986653321 2223333332211 12222211
Q ss_pred hhhHHhhhcccccccccccchhhhhHHHHhhhhchhhhhhhHHHHHHHHHhhccccccchhhhhhhccccccccchhhHH
Q 002521 437 LEDVLEMTGYKLTSLNQVDDYGQEKLWKTQRQLLPRKRKNQITALVEDALHKSNFENYSSRARDSLASWTADCIGFNLIE 516 (913)
Q Consensus 437 l~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~li~ 516 (913)
.. ......+.
T Consensus 791 ~~----------------------------------------------------------------------~~~~~~k~ 800 (1147)
T PRK10689 791 RE----------------------------------------------------------------------YDSLVVRE 800 (1147)
T ss_pred Ee----------------------------------------------------------------------cCcHHHHH
Confidence 10 00000111
Q ss_pred HHHHHHhhhcCCCcEEEEcCChHHHHHHHHHHHcCCCCCCCCCeEEEEecCCCChHHHHHHhccCCCCccEEEEecchhh
Q 002521 517 AVLCHICRKECPGAVLVFMTGWEDISCLRDQLKSHPLLGDPNRVLLLTCHGSMPTSEQKFIFEKAPPNIRKIVLATNMAE 596 (913)
Q Consensus 517 ~ll~~i~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~g~~kVLVATniae 596 (913)
.++..+. .+|.++|||++++.++.+++.|.... ++..+..+||+|++.+|..++..|++|+.+|||||++++
T Consensus 801 ~il~el~---r~gqv~vf~n~i~~ie~la~~L~~~~-----p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIie 872 (1147)
T PRK10689 801 AILREIL---RGGQVYYLYNDVENIQKAAERLAELV-----PEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIE 872 (1147)
T ss_pred HHHHHHh---cCCeEEEEECCHHHHHHHHHHHHHhC-----CCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhh
Confidence 2223332 36789999999999999999998751 246788899999999999999999999999999999999
Q ss_pred hcCCCCCeEEEEeCCCCcceeecCCCCCCcCCccccCHhhHHHHhcccCCC-CCcEEEEecCh
Q 002521 597 ASITINDIVFVVDCGKAKETTYDALNNTPCLLPSWISQASARQRRGRAGRV-QPGQCYHLYPR 658 (913)
Q Consensus 597 ~GIdIp~v~~VId~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~-~~G~c~~L~t~ 658 (913)
+|||||++++||...... | +-++|.||+||+||. ..|.||.+++.
T Consensus 873 rGIDIP~v~~VIi~~ad~---f--------------glaq~~Qr~GRvGR~g~~g~a~ll~~~ 918 (1147)
T PRK10689 873 TGIDIPTANTIIIERADH---F--------------GLAQLHQLRGRVGRSHHQAYAWLLTPH 918 (1147)
T ss_pred cccccccCCEEEEecCCC---C--------------CHHHHHHHhhccCCCCCceEEEEEeCC
Confidence 999999999998421111 1 334688999999999 78999999864
No 52
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=4.6e-32 Score=340.00 Aligned_cols=313 Identities=22% Similarity=0.287 Sum_probs=204.4
Q ss_pred EEcCCCchHHhHHHHHHHHHHHHhC--------CCCceEEEEcchhHHHHHHHHHHHHHHh----------CC-CcccEe
Q 002521 270 ISGETGCGKTTQLPQYILESEIESG--------RGAFCNIICTQPRRISAMAVSERVSAER----------GE-PLGETV 330 (913)
Q Consensus 270 I~apTGSGKTt~~~~~ile~~~~~~--------~~~~~~Ilv~qPrr~La~qva~rv~~~~----------~~-~~g~~v 330 (913)
|++|||||||+++.+++++.++... ....+++|++.|+|+|+.|+.+++.... |. ..+..|
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 5789999999999999999887542 1234788888899999999999886421 11 123334
Q ss_pred eeEEec----c--ccCCCCceEEEEecHHHHHHHhcCC--CCCCceEEEeccccc-----cCcchHHHHHHHHHhCccCc
Q 002521 331 GYKVRL----E--GMKGKNTHLLFCTSGILLRRLLSDH--NLNGVTHVFVDEIHE-----RGMNEDFLLIVLKDLLPRRR 397 (913)
Q Consensus 331 Gy~v~~----e--~~~~~~~~Ivv~T~g~Ll~~l~~~~--~L~~~s~IIIDEaHe-----r~~~~d~ll~llk~ll~~~~ 397 (913)
+..... + ......++|+|+||+.|..++.+.. .++++++|||||+|. ||......+..++.++. .
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~--~ 158 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLH--T 158 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCC--C
Confidence 322211 1 1223468999999999998876542 789999999999994 45555555555555544 4
Q ss_pred cceEEEecccc-CHHHHHhhhCCC-Ceecc-CC--ccccceeeeh-hhHHhhhcccccccccccchhhhhHHHHhhhhch
Q 002521 398 DLRLILMSATL-NAELFSNYFGGA-PTIHI-PG--FTYPVQAHFL-EDVLEMTGYKLTSLNQVDDYGQEKLWKTQRQLLP 471 (913)
Q Consensus 398 ~~kiIlmSATl-~~~~~~~yf~~~-~~i~i-~g--~~~pv~~~yl-~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (913)
+.|+|++|||+ +.+.+.+|+++. ++..+ +. +..++.+..- ++.... .... ...+.. ..
T Consensus 159 ~~QrIgLSATI~n~eevA~~L~g~~pv~Iv~~~~~r~~~l~v~vp~~d~~~~---~~~~----~~~~~~---------~~ 222 (1490)
T PRK09751 159 SAQRIGLSATVRSASDVAAFLGGDRPVTVVNPPAMRHPQIRIVVPVANMDDV---SSVA----SGTGED---------SH 222 (1490)
T ss_pred CCeEEEEEeeCCCHHHHHHHhcCCCCEEEECCCCCcccceEEEEecCchhhc---cccc----cccccc---------cc
Confidence 57999999999 678899999753 32222 11 2222222110 000000 0000 000000 00
Q ss_pred hhhhhhHHHHHHHHHhhccccccchhhhhhhccccccccchhhHHHHHHHHhhhcCCCcEEEEcCChHHHHHHHHHHHcC
Q 002521 472 RKRKNQITALVEDALHKSNFENYSSRARDSLASWTADCIGFNLIEAVLCHICRKECPGAVLVFMTGWEDISCLRDQLKSH 551 (913)
Q Consensus 472 ~~~~~~i~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~li~~ll~~i~~~~~~g~iLVF~~~~~~i~~l~~~L~~~ 551 (913)
......+.. .....++..+ ...+++|||||++..++.++..|++.
T Consensus 223 ~~r~~~i~~--------------------------------~v~~~il~~i---~~~~stLVFvNSR~~AE~La~~L~~~ 267 (1490)
T PRK09751 223 AGREGSIWP--------------------------------YIETGILDEV---LRHRSTIVFTNSRGLAEKLTARLNEL 267 (1490)
T ss_pred hhhhhhhhH--------------------------------HHHHHHHHHH---hcCCCEEEECCCHHHHHHHHHHHHHh
Confidence 000000000 0001112222 23578999999999999999999753
Q ss_pred CCC-------------------C-------CCCCeEEEEecCCCChHHHHHHhccCCCCccEEEEecchhhhcCCCCCeE
Q 002521 552 PLL-------------------G-------DPNRVLLLTCHGSMPTSEQKFIFEKAPPNIRKIVLATNMAEASITINDIV 605 (913)
Q Consensus 552 ~~~-------------------~-------~~~~~~v~~lHs~l~~~er~~v~~~f~~g~~kVLVATniae~GIdIp~v~ 605 (913)
... + ....+.+..|||+|++++|..+++.|++|++++||||+++|.||||++|+
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~~IE~~fK~G~LrvLVATssLELGIDIg~VD 347 (1490)
T PRK09751 268 YAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRAITEQALKSGELRCVVATSSLELGIDMGAVD 347 (1490)
T ss_pred hhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHHHHHHHHHhCCceEEEeCcHHHccCCcccCC
Confidence 100 0 00123477899999999999999999999999999999999999999999
Q ss_pred EEEeCCCCcceeecCCCCCCcCCccccCHhhHHHHhcccCCCC--CcEEE
Q 002521 606 FVVDCGKAKETTYDALNNTPCLLPSWISQASARQRRGRAGRVQ--PGQCY 653 (913)
Q Consensus 606 ~VId~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~~--~G~c~ 653 (913)
+||+.|.|+ |.++|+||+|||||.. .++++
T Consensus 348 lVIq~gsP~------------------sVas~LQRiGRAGR~~gg~s~gl 379 (1490)
T PRK09751 348 LVIQVATPL------------------SVASGLQRIGRAGHQVGGVSKGL 379 (1490)
T ss_pred EEEEeCCCC------------------CHHHHHHHhCCCCCCCCCccEEE
Confidence 999977665 8889999999999983 34445
No 53
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.98 E-value=3.5e-31 Score=290.55 Aligned_cols=381 Identities=16% Similarity=0.190 Sum_probs=237.2
Q ss_pred CCcHHHHHHHHHHHHcCCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHHHHHhCCCccc
Q 002521 249 LPSFKEKERLLQAIARNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVSAERGEPLGE 328 (913)
Q Consensus 249 lP~~~~q~~il~~i~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv~~~~~~~~g~ 328 (913)
+-...||..+......+ +++|+.|||-|||+++.+.+...+... +. ++++++||+-|+.|.++.+.+.+|.+-..
T Consensus 14 ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~~---~~-kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~ 88 (542)
T COG1111 14 IEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRWF---GG-KVLFLAPTKPLVLQHAEFCRKVTGIPEDE 88 (542)
T ss_pred ccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHhc---CC-eEEEecCCchHHHHHHHHHHHHhCCChhh
Confidence 34456788777777666 777788999999999998888766322 22 78999999999999999999999886665
Q ss_pred EeeeEEe--ccc--cCCCCceEEEEecHHHHHHHhcCC-CCCCceEEEeccccccCcchHHHHHHHHHhCccCccceEEE
Q 002521 329 TVGYKVR--LEG--MKGKNTHLLFCTSGILLRRLLSDH-NLNGVTHVFVDEIHERGMNEDFLLIVLKDLLPRRRDLRLIL 403 (913)
Q Consensus 329 ~vGy~v~--~e~--~~~~~~~Ivv~T~g~Ll~~l~~~~-~L~~~s~IIIDEaHer~~~~d~ll~llk~ll~~~~~~kiIl 403 (913)
.+.+... -+. ......+|+|+||+++.+-|..+. ++.+++|||+|||| |....-..-.+.+..+....+..+++
T Consensus 89 i~~ltGev~p~~R~~~w~~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAH-RAvGnyAYv~Va~~y~~~~k~~~ilg 167 (542)
T COG1111 89 IAALTGEVRPEEREELWAKKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAH-RAVGNYAYVFVAKEYLRSAKNPLILG 167 (542)
T ss_pred eeeecCCCChHHHHHHHhhCCEEEeccHHHHhHHhcCccChHHceEEEechhh-hccCcchHHHHHHHHHHhccCceEEE
Confidence 4443321 111 112356899999999999888776 89999999999999 64444334444555666667778999
Q ss_pred ecccc--CHHHHHhhhCCCCeeccCC----------ccccceeeeh--------hhHHhhhcccccc----cc------c
Q 002521 404 MSATL--NAELFSNYFGGAPTIHIPG----------FTYPVQAHFL--------EDVLEMTGYKLTS----LN------Q 453 (913)
Q Consensus 404 mSATl--~~~~~~~yf~~~~~i~i~g----------~~~pv~~~yl--------~di~~~~~~~~~~----~~------~ 453 (913)
||||+ +.+.+.+-..+-.+-+|.- ....+++.++ .++.+..+..+.+ .. .
T Consensus 168 LTASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L~~~g~~~~ 247 (542)
T COG1111 168 LTASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPLKELGVIES 247 (542)
T ss_pred EecCCCCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcCceec
Confidence 99999 5566665554322222111 1122222221 1111111110000 00 0
Q ss_pred ccchhhhhHHHHh-hhhc--h--hhhhh-------------------------hHHHHHHHHHhhccccccchhhhh---
Q 002521 454 VDDYGQEKLWKTQ-RQLL--P--RKRKN-------------------------QITALVEDALHKSNFENYSSRARD--- 500 (913)
Q Consensus 454 ~~~~~~~~~~~~~-~~~~--~--~~~~~-------------------------~i~~~v~~~l~~~~~~~~~~~~~~--- 500 (913)
..+.......... .+.. . ..... ....+++..-..... +.+.....
T Consensus 248 ~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~-~~sk~a~~l~~ 326 (542)
T COG1111 248 SSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATK-GGSKAAKSLLA 326 (542)
T ss_pred cCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcc-cchHHHHHHhc
Confidence 0000001111100 0000 0 00000 001111111111111 00000000
Q ss_pred ------h---h---ccccccccchhhHHHHHHHHhhhcCCCcEEEEcCChHHHHHHHHHHHcCCCCCCCCCeEEEE----
Q 002521 501 ------S---L---ASWTADCIGFNLIEAVLCHICRKECPGAVLVFMTGWEDISCLRDQLKSHPLLGDPNRVLLLT---- 564 (913)
Q Consensus 501 ------~---l---~~~~~~~~~~~li~~ll~~i~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~v~~---- 564 (913)
. + ......-...+....++...+.+..+.++|||++-++.++.+.+.|..... ...+.+
T Consensus 327 d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~-----~~~~rFiGQa 401 (542)
T COG1111 327 DPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGI-----KARVRFIGQA 401 (542)
T ss_pred ChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCC-----cceeEEeecc
Confidence 0 0 011111223345556666667667778999999999999999999988621 111111
Q ss_pred ---ecCCCChHHHHHHhccCCCCccEEEEecchhhhcCCCCCeEEEEeCCCCcceeecCCCCCCcCCccccCHhhHHHHh
Q 002521 565 ---CHGSMPTSEQKFIFEKAPPNIRKIVLATNMAEASITINDIVFVVDCGKAKETTYDALNNTPCLLPSWISQASARQRR 641 (913)
Q Consensus 565 ---lHs~l~~~er~~v~~~f~~g~~kVLVATniae~GIdIp~v~~VId~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~ 641 (913)
...||++.+|.++++.|+.|..+|||||+|+|+|+|||++++||. |++.. |.--++||.
T Consensus 402 ~r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVif--------YEpvp----------SeIR~IQR~ 463 (542)
T COG1111 402 SREGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIF--------YEPVP----------SEIRSIQRK 463 (542)
T ss_pred ccccccccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEEE--------ecCCc----------HHHHHHHhh
Confidence 235899999999999999999999999999999999999999998 55533 555788999
Q ss_pred cccCCCCCcEEEEecChh
Q 002521 642 GRAGRVQPGQCYHLYPRC 659 (913)
Q Consensus 642 GRAGR~~~G~c~~L~t~~ 659 (913)
||+||.++|..|.|+++.
T Consensus 464 GRTGR~r~Grv~vLvt~g 481 (542)
T COG1111 464 GRTGRKRKGRVVVLVTEG 481 (542)
T ss_pred CccccCCCCeEEEEEecC
Confidence 999999999999999876
No 54
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.98 E-value=2.4e-32 Score=289.04 Aligned_cols=322 Identities=18% Similarity=0.204 Sum_probs=229.1
Q ss_pred hcCCCcHHHHHHHHHHHHcCCeEEEEcCCCchHHhHHHHHHHHHHHH----hCCCCceEEEEcchhHHHHHHHHHHHHHH
Q 002521 246 RKSLPSFKEKERLLQAIARNQVIVISGETGCGKTTQLPQYILESEIE----SGRGAFCNIICTQPRRISAMAVSERVSAE 321 (913)
Q Consensus 246 r~~lP~~~~q~~il~~i~~~~~vII~apTGSGKTt~~~~~ile~~~~----~~~~~~~~Ilv~qPrr~La~qva~rv~~~ 321 (913)
.++.|+ |.+.++.++++.+++.+|.||+|||++++++-+..+.. .+......++++.|||+||.|+.-.+.++
T Consensus 241 qKPtPI---qSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreLalqie~e~~ky 317 (629)
T KOG0336|consen 241 QKPTPI---QSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTRELALQIEGEVKKY 317 (629)
T ss_pred CCCCcc---hhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHHHHHHHHhHHhHh
Confidence 344555 77899999999999999999999999998875543321 12223456777789999999998777665
Q ss_pred hCCCcccEeeeE--Eeccc--cCCCCceEEEEecHHHHHHHhcCC-CCCCceEEEeccccccCcchHHHHHHHHHhCccC
Q 002521 322 RGEPLGETVGYK--VRLEG--MKGKNTHLLFCTSGILLRRLLSDH-NLNGVTHVFVDEIHERGMNEDFLLIVLKDLLPRR 396 (913)
Q Consensus 322 ~~~~~g~~vGy~--v~~e~--~~~~~~~Ivv~T~g~Ll~~l~~~~-~L~~~s~IIIDEaHer~~~~d~ll~llk~ll~~~ 396 (913)
.-...-..+-|. -|.+. .......|+++|||+|.++...+. .|..+.++|+|||+. -++..|-..+.+.++..+
T Consensus 318 syng~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n~i~l~siTYlVlDEADr-MLDMgFEpqIrkilldiR 396 (629)
T KOG0336|consen 318 SYNGLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDNVINLASITYLVLDEADR-MLDMGFEPQIRKILLDIR 396 (629)
T ss_pred hhcCcceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhcCeeeeeeeEEEEecchhh-hhcccccHHHHHHhhhcC
Confidence 432222222222 12111 123568999999999999887766 899999999999994 366666667777888899
Q ss_pred ccceEEEeccccCHH---HHHhhhCCCCeeccCCccccceeeehhhHHhhhcccccccccccchhhhhHHHHhhhhchhh
Q 002521 397 RDLRLILMSATLNAE---LFSNYFGGAPTIHIPGFTYPVQAHFLEDVLEMTGYKLTSLNQVDDYGQEKLWKTQRQLLPRK 473 (913)
Q Consensus 397 ~~~kiIlmSATl~~~---~~~~yf~~~~~i~i~g~~~pv~~~yl~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (913)
|+.++++.|||++.. +..+|+.++ ++..-|..--+..+-....+ ...
T Consensus 397 PDRqtvmTSATWP~~VrrLa~sY~Kep-~~v~vGsLdL~a~~sVkQ~i-----------------------------~v~ 446 (629)
T KOG0336|consen 397 PDRQTVMTSATWPEGVRRLAQSYLKEP-MIVYVGSLDLVAVKSVKQNI-----------------------------IVT 446 (629)
T ss_pred CcceeeeecccCchHHHHHHHHhhhCc-eEEEecccceeeeeeeeeeE-----------------------------Eec
Confidence 999999999999764 445666544 44333332111111111000 000
Q ss_pred hhhhHHHHHHHHHhhccccccchhhhhhhccccccccchhhHHHHHHHHh-hhcCCCcEEEEcCChHHHHHHHHHHHcCC
Q 002521 474 RKNQITALVEDALHKSNFENYSSRARDSLASWTADCIGFNLIEAVLCHIC-RKECPGAVLVFMTGWEDISCLRDQLKSHP 552 (913)
Q Consensus 474 ~~~~i~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~li~~ll~~i~-~~~~~g~iLVF~~~~~~i~~l~~~L~~~~ 552 (913)
.... +..++..+. ......++||||..+..+..|..-|.-.
T Consensus 447 ~d~~-------------------------------------k~~~~~~f~~~ms~ndKvIiFv~~K~~AD~LSSd~~l~- 488 (629)
T KOG0336|consen 447 TDSE-------------------------------------KLEIVQFFVANMSSNDKVIIFVSRKVMADHLSSDFCLK- 488 (629)
T ss_pred ccHH-------------------------------------HHHHHHHHHHhcCCCceEEEEEechhhhhhccchhhhc-
Confidence 0000 001111111 1234678999999988777776665543
Q ss_pred CCCCCCCeEEEEecCCCChHHHHHHhccCCCCccEEEEecchhhhcCCCCCeEEEEeCCCCcceeecCCCCCCcCCcccc
Q 002521 553 LLGDPNRVLLLTCHGSMPTSEQKFIFEKAPPNIRKIVLATNMAEASITINDIVFVVDCGKAKETTYDALNNTPCLLPSWI 632 (913)
Q Consensus 553 ~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~g~~kVLVATniae~GIdIp~v~~VId~g~~k~~~yd~~~~~~~l~~~~i 632 (913)
++....+||+-.+.+|+..++.|++|+++|||||++|.+|+|+|||++|+|+++|.
T Consensus 489 ------gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiTHV~NyDFP~------------------ 544 (629)
T KOG0336|consen 489 ------GISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRGLDVPDITHVYNYDFPR------------------ 544 (629)
T ss_pred ------ccchhhccCChhhhhHHHHHHhhhcCceEEEEEechhhcCCCchhcceeeccCCCc------------------
Confidence 77888899999999999999999999999999999999999999999999966655
Q ss_pred CHhhHHHHhcccCCC-CCcEEEEecChhhHHh
Q 002521 633 SQASARQRRGRAGRV-QPGQCYHLYPRCVYEA 663 (913)
Q Consensus 633 Ska~~~QR~GRAGR~-~~G~c~~L~t~~~~~~ 663 (913)
...+|+||+||+||. +.|..+.+++..++..
T Consensus 545 nIeeYVHRvGrtGRaGr~G~sis~lt~~D~~~ 576 (629)
T KOG0336|consen 545 NIEEYVHRVGRTGRAGRTGTSISFLTRNDWSM 576 (629)
T ss_pred cHHHHHHHhcccccCCCCcceEEEEehhhHHH
Confidence 334888999999999 7899999999988764
No 55
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.98 E-value=8.7e-31 Score=317.13 Aligned_cols=302 Identities=18% Similarity=0.247 Sum_probs=205.4
Q ss_pred hcCCCcHHHHHHHHHHHHcC------CeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHHH
Q 002521 246 RKSLPSFKEKERLLQAIARN------QVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVS 319 (913)
Q Consensus 246 r~~lP~~~~q~~il~~i~~~------~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv~ 319 (913)
..++..+..|+++++.|..+ .+++++||||||||.++..+++..+. .|. .+++++||++||.|+++.+.
T Consensus 257 ~l~f~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~---~g~--q~lilaPT~~LA~Q~~~~l~ 331 (681)
T PRK10917 257 SLPFELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIE---AGY--QAALMAPTEILAEQHYENLK 331 (681)
T ss_pred hCCCCCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHH---cCC--eEEEEeccHHHHHHHHHHHH
Confidence 34555678899999988776 47999999999999999999987653 233 45555699999999999998
Q ss_pred HHhCCCcccEeeeEEecc----------ccCCCCceEEEEecHHHHHHHhcCCCCCCceEEEeccccccCcchHHHHHHH
Q 002521 320 AERGEPLGETVGYKVRLE----------GMKGKNTHLLFCTSGILLRRLLSDHNLNGVTHVFVDEIHERGMNEDFLLIVL 389 (913)
Q Consensus 320 ~~~~~~~g~~vGy~v~~e----------~~~~~~~~Ivv~T~g~Ll~~l~~~~~L~~~s~IIIDEaHer~~~~d~ll~ll 389 (913)
+.+.. .|..++.-.... ....+.++|+|+||+.+.. ...+.++++|||||+|+.+..... .+
T Consensus 332 ~l~~~-~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~----~v~~~~l~lvVIDE~Hrfg~~qr~---~l 403 (681)
T PRK10917 332 KLLEP-LGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD----DVEFHNLGLVIIDEQHRFGVEQRL---AL 403 (681)
T ss_pred HHHhh-cCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc----cchhcccceEEEechhhhhHHHHH---HH
Confidence 76532 233333322211 2233568999999987643 236789999999999966543221 11
Q ss_pred HHhCccCccceEEEeccccCHHHHH-hhhCCCCeecc---CCccccceeeehhhHHhhhcccccccccccchhhhhHHHH
Q 002521 390 KDLLPRRRDLRLILMSATLNAELFS-NYFGGAPTIHI---PGFTYPVQAHFLEDVLEMTGYKLTSLNQVDDYGQEKLWKT 465 (913)
Q Consensus 390 k~ll~~~~~~kiIlmSATl~~~~~~-~yf~~~~~i~i---~g~~~pv~~~yl~di~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (913)
. ......++++||||+.+..+. .+++...+..+ +....|+...+...
T Consensus 404 ~---~~~~~~~iL~~SATp~prtl~~~~~g~~~~s~i~~~p~~r~~i~~~~~~~-------------------------- 454 (681)
T PRK10917 404 R---EKGENPHVLVMTATPIPRTLAMTAYGDLDVSVIDELPPGRKPITTVVIPD-------------------------- 454 (681)
T ss_pred H---hcCCCCCEEEEeCCCCHHHHHHHHcCCCceEEEecCCCCCCCcEEEEeCc--------------------------
Confidence 1 122346899999998665443 33443222222 11122333222110
Q ss_pred hhhhchhhhhhhHHHHHHHHHhhccccccchhhhhhhccccccccchhhHHHHHHHHhhhcCCCcEEEEcCChH------
Q 002521 466 QRQLLPRKRKNQITALVEDALHKSNFENYSSRARDSLASWTADCIGFNLIEAVLCHICRKECPGAVLVFMTGWE------ 539 (913)
Q Consensus 466 ~~~~~~~~~~~~i~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~li~~ll~~i~~~~~~g~iLVF~~~~~------ 539 (913)
.....+. ..+...+ ..+.+++||||..+
T Consensus 455 -------~~~~~~~-------------------------------------~~i~~~~--~~g~q~~v~~~~ie~s~~l~ 488 (681)
T PRK10917 455 -------SRRDEVY-------------------------------------ERIREEI--AKGRQAYVVCPLIEESEKLD 488 (681)
T ss_pred -------ccHHHHH-------------------------------------HHHHHHH--HcCCcEEEEEcccccccchh
Confidence 0000000 0111111 24568999999654
Q ss_pred --HHHHHHHHHHcCCCCCCCCCeEEEEecCCCChHHHHHHhccCCCCccEEEEecchhhhcCCCCCeEEEEeCCCCccee
Q 002521 540 --DISCLRDQLKSHPLLGDPNRVLLLTCHGSMPTSEQKFIFEKAPPNIRKIVLATNMAEASITINDIVFVVDCGKAKETT 617 (913)
Q Consensus 540 --~i~~l~~~L~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~g~~kVLVATniae~GIdIp~v~~VId~g~~k~~~ 617 (913)
.++.+++.|.... .++.+..+||+|++++|+.+++.|++|+.+|||||+++++|||+|++++||+.+.++
T Consensus 489 ~~~~~~~~~~L~~~~-----~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GiDip~v~~VIi~~~~r--- 560 (681)
T PRK10917 489 LQSAEETYEELQEAF-----PELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIEVGVDVPNATVMVIENAER--- 560 (681)
T ss_pred HHHHHHHHHHHHHHC-----CCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcceeeCcccCCCcEEEEeCCCC---
Confidence 4556677777541 136799999999999999999999999999999999999999999999999854443
Q ss_pred ecCCCCCCcCCccccCHhhHHHHhcccCCC-CCcEEEEecC
Q 002521 618 YDALNNTPCLLPSWISQASARQRRGRAGRV-QPGQCYHLYP 657 (913)
Q Consensus 618 yd~~~~~~~l~~~~iSka~~~QR~GRAGR~-~~G~c~~L~t 657 (913)
| +.+.+.||+||+||. .+|.||.+++
T Consensus 561 ~--------------gls~lhQ~~GRvGR~g~~g~~ill~~ 587 (681)
T PRK10917 561 F--------------GLAQLHQLRGRVGRGAAQSYCVLLYK 587 (681)
T ss_pred C--------------CHHHHHHHhhcccCCCCceEEEEEEC
Confidence 1 345788999999999 6899999985
No 56
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=5.1e-31 Score=277.26 Aligned_cols=323 Identities=21% Similarity=0.288 Sum_probs=237.3
Q ss_pred hhhHHhhhcCCCcHHHHHHHHHHHHcC--CeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHH
Q 002521 239 GNKMLDFRKSLPSFKEKERLLQAIARN--QVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSE 316 (913)
Q Consensus 239 ~~~l~~~r~~lP~~~~q~~il~~i~~~--~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~ 316 (913)
.+.+....++.|. +.|+..++.++.+ +++|..+..|+|||.++.+.+|...-.....++| +|+.|+|+||.|+.+
T Consensus 102 lkgly~M~F~kPs-kIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~~~~PQ~--iCLaPtrELA~Q~~e 178 (477)
T KOG0332|consen 102 LKGLYAMKFQKPS-KIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPDVVVPQC--ICLAPTRELAPQTGE 178 (477)
T ss_pred HhHHHHhccCCcc-hHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCccccCCCc--eeeCchHHHHHHHHH
Confidence 4556666677776 4567778888765 6999999999999999999999876444444444 556699999999988
Q ss_pred HHHHHhCCCcccEeeeEEeccccCCC---CceEEEEecHHHHHHHhcCC--CCCCceEEEecccccc----CcchHHHHH
Q 002521 317 RVSAERGEPLGETVGYKVRLEGMKGK---NTHLLFCTSGILLRRLLSDH--NLNGVTHVFVDEIHER----GMNEDFLLI 387 (913)
Q Consensus 317 rv~~~~~~~~g~~vGy~v~~e~~~~~---~~~Ivv~T~g~Ll~~l~~~~--~L~~~s~IIIDEaHer----~~~~d~ll~ 387 (913)
.| .++|.-.+....|.++......+ ..+|+++|||.+++++..-. .+..+.++|+|||+.+ |+..+-+.+
T Consensus 179 Vv-~eMGKf~~ita~yair~sk~~rG~~i~eqIviGTPGtv~Dlm~klk~id~~kikvfVlDEAD~Mi~tqG~~D~S~rI 257 (477)
T KOG0332|consen 179 VV-EEMGKFTELTASYAIRGSKAKRGNKLTEQIVIGTPGTVLDLMLKLKCIDLEKIKVFVLDEADVMIDTQGFQDQSIRI 257 (477)
T ss_pred HH-HHhcCceeeeEEEEecCcccccCCcchhheeeCCCccHHHHHHHHHhhChhhceEEEecchhhhhhcccccccchhh
Confidence 87 55666556677888886633322 25899999999999886522 7889999999999953 333222222
Q ss_pred HHHHhCccCccceEEEeccccCHH--HHHh-hhCCCCeeccCCc---cccceeeehhhHHhhhcccccccccccchhhhh
Q 002521 388 VLKDLLPRRRDLRLILMSATLNAE--LFSN-YFGGAPTIHIPGF---TYPVQAHFLEDVLEMTGYKLTSLNQVDDYGQEK 461 (913)
Q Consensus 388 llk~ll~~~~~~kiIlmSATl~~~--~~~~-yf~~~~~i~i~g~---~~pv~~~yl~di~~~~~~~~~~~~~~~~~~~~~ 461 (913)
. ..++ ++.|+|++|||.... .|.. ...++.++.+..+ .++|..+|+
T Consensus 258 ~--~~lP--~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~eel~L~~IkQlyv------------------------ 309 (477)
T KOG0332|consen 258 M--RSLP--RNQQLLLFSATFVEKVAAFALKIVPNANVIILKREELALDNIKQLYV------------------------ 309 (477)
T ss_pred h--hhcC--CcceEEeeechhHHHHHHHHHHhcCCCceeeeehhhccccchhhhee------------------------
Confidence 1 2333 578999999998532 3332 2233433333221 122322222
Q ss_pred HHHHhhhhchhhhhhhHHHHHHHHHhhccccccchhhhhhhccccccccchhhHHHHHHHHhhhcCCCcEEEEcCChHHH
Q 002521 462 LWKTQRQLLPRKRKNQITALVEDALHKSNFENYSSRARDSLASWTADCIGFNLIEAVLCHICRKECPGAVLVFMTGWEDI 541 (913)
Q Consensus 462 ~~~~~~~~~~~~~~~~i~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~li~~ll~~i~~~~~~g~iLVF~~~~~~i 541 (913)
.+..-+.+...++.+.....-|..+|||.+++.+
T Consensus 310 ----------------------------------------------~C~~~~~K~~~l~~lyg~~tigqsiIFc~tk~ta 343 (477)
T KOG0332|consen 310 ----------------------------------------------LCACRDDKYQALVNLYGLLTIGQSIIFCHTKATA 343 (477)
T ss_pred ----------------------------------------------eccchhhHHHHHHHHHhhhhhhheEEEEeehhhH
Confidence 2222233444566666666678999999999999
Q ss_pred HHHHHHHHcCCCCCCCCCeEEEEecCCCChHHHHHHhccCCCCccEEEEecchhhhcCCCCCeEEEEeCCCCcceeecCC
Q 002521 542 SCLRDQLKSHPLLGDPNRVLLLTCHGSMPTSEQKFIFEKAPPNIRKIVLATNMAEASITINDIVFVVDCGKAKETTYDAL 621 (913)
Q Consensus 542 ~~l~~~L~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~g~~kVLVATniae~GIdIp~v~~VId~g~~k~~~yd~~ 621 (913)
..++..+... |..|..+||.|..++|..+.+.|+.|.-+|||+||+.++|||++.|++|||+++|-. |+..
T Consensus 344 ~~l~~~m~~~-------Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGiDv~qVs~VvNydlP~~--~~~~ 414 (477)
T KOG0332|consen 344 MWLYEEMRAE-------GHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCARGIDVAQVSVVVNYDLPVK--YTGE 414 (477)
T ss_pred HHHHHHHHhc-------CceeEEeeccchhHHHHHHHHHHhcCcceEEEEechhhcccccceEEEEEecCCccc--cCCC
Confidence 9999999986 889999999999999999999999999999999999999999999999999776632 2111
Q ss_pred CCCCcCCccccCHhhHHHHhcccCCC-CCcEEEEecCh
Q 002521 622 NNTPCLLPSWISQASARQRRGRAGRV-QPGQCYHLYPR 658 (913)
Q Consensus 622 ~~~~~l~~~~iSka~~~QR~GRAGR~-~~G~c~~L~t~ 658 (913)
-..+.|.||+||+||. +.|.+|.|...
T Consensus 415 ----------pD~etYlHRiGRtGRFGkkG~a~n~v~~ 442 (477)
T KOG0332|consen 415 ----------PDYETYLHRIGRTGRFGKKGLAINLVDD 442 (477)
T ss_pred ----------CCHHHHHHHhcccccccccceEEEeecc
Confidence 2566899999999999 78999998654
No 57
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.97 E-value=9.5e-31 Score=314.82 Aligned_cols=302 Identities=20% Similarity=0.269 Sum_probs=202.0
Q ss_pred CCCcHHHHHHHHHHHHcC------CeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHHHHH
Q 002521 248 SLPSFKEKERLLQAIARN------QVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVSAE 321 (913)
Q Consensus 248 ~lP~~~~q~~il~~i~~~------~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv~~~ 321 (913)
++..+..|+++++.|..+ .+.+++||||||||.++.++++..+. .|. .+++++||++||.|+++.+.+.
T Consensus 233 pf~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~---~g~--qvlilaPT~~LA~Q~~~~~~~l 307 (630)
T TIGR00643 233 PFKLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIE---AGY--QVALMAPTEILAEQHYNSLRNL 307 (630)
T ss_pred CCCCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHH---cCC--cEEEECCHHHHHHHHHHHHHHH
Confidence 334567888888888665 36899999999999999988887653 233 4555669999999999999876
Q ss_pred hCCCcccEeeeEEe----------ccccCCCCceEEEEecHHHHHHHhcCCCCCCceEEEeccccccCcchHHHHHHHHH
Q 002521 322 RGEPLGETVGYKVR----------LEGMKGKNTHLLFCTSGILLRRLLSDHNLNGVTHVFVDEIHERGMNEDFLLIVLKD 391 (913)
Q Consensus 322 ~~~~~g~~vGy~v~----------~e~~~~~~~~Ivv~T~g~Ll~~l~~~~~L~~~s~IIIDEaHer~~~~d~ll~llk~ 391 (913)
++. .|..++.-.. .+....++.+|+|+|++.+.+ ...+.++++|||||+|..+....- . +..
T Consensus 308 ~~~-~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~----~~~~~~l~lvVIDEaH~fg~~qr~--~-l~~ 379 (630)
T TIGR00643 308 LAP-LGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE----KVEFKRLALVIIDEQHRFGVEQRK--K-LRE 379 (630)
T ss_pred hcc-cCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc----cccccccceEEEechhhccHHHHH--H-HHH
Confidence 542 2223322211 112234567999999987653 336789999999999976544321 1 112
Q ss_pred hCccCccceEEEeccccCHHHHH-hhhCCCCeec---cCCccccceeeehhhHHhhhcccccccccccchhhhhHHHHhh
Q 002521 392 LLPRRRDLRLILMSATLNAELFS-NYFGGAPTIH---IPGFTYPVQAHFLEDVLEMTGYKLTSLNQVDDYGQEKLWKTQR 467 (913)
Q Consensus 392 ll~~~~~~kiIlmSATl~~~~~~-~yf~~~~~i~---i~g~~~pv~~~yl~di~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (913)
........++++||||+.+..+. ..++...+.. .+....|+..++...
T Consensus 380 ~~~~~~~~~~l~~SATp~prtl~l~~~~~l~~~~i~~~p~~r~~i~~~~~~~---------------------------- 431 (630)
T TIGR00643 380 KGQGGFTPHVLVMSATPIPRTLALTVYGDLDTSIIDELPPGRKPITTVLIKH---------------------------- 431 (630)
T ss_pred hcccCCCCCEEEEeCCCCcHHHHHHhcCCcceeeeccCCCCCCceEEEEeCc----------------------------
Confidence 22211246899999998555433 2233211111 111122333322110
Q ss_pred hhchhhhhhhHHHHHHHHHhhccccccchhhhhhhccccccccchhhHHHHHHHHhhh-cCCCcEEEEcCCh--------
Q 002521 468 QLLPRKRKNQITALVEDALHKSNFENYSSRARDSLASWTADCIGFNLIEAVLCHICRK-ECPGAVLVFMTGW-------- 538 (913)
Q Consensus 468 ~~~~~~~~~~i~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~li~~ll~~i~~~-~~~g~iLVF~~~~-------- 538 (913)
... ..++..+... ..+..++|||+..
T Consensus 432 -----~~~----------------------------------------~~~~~~i~~~l~~g~q~~v~~~~i~~s~~~~~ 466 (630)
T TIGR00643 432 -----DEK----------------------------------------DIVYEFIEEEIAKGRQAYVVYPLIEESEKLDL 466 (630)
T ss_pred -----chH----------------------------------------HHHHHHHHHHHHhCCcEEEEEccccccccchH
Confidence 000 0011111111 2356799999976
Q ss_pred HHHHHHHHHHHcCCCCCCCCCeEEEEecCCCChHHHHHHhccCCCCccEEEEecchhhhcCCCCCeEEEEeCCCCcceee
Q 002521 539 EDISCLRDQLKSHPLLGDPNRVLLLTCHGSMPTSEQKFIFEKAPPNIRKIVLATNMAEASITINDIVFVVDCGKAKETTY 618 (913)
Q Consensus 539 ~~i~~l~~~L~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~g~~kVLVATniae~GIdIp~v~~VId~g~~k~~~y 618 (913)
..++.+++.|.... .++.+..+||+|++++|..+++.|++|+.+|||||+++|+|||+|++++||..+.++ |
T Consensus 467 ~~a~~~~~~L~~~~-----~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GvDiP~v~~VIi~~~~r---~ 538 (630)
T TIGR00643 467 KAAEALYERLKKAF-----PKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVIEVGVDVPNATVMVIEDAER---F 538 (630)
T ss_pred HHHHHHHHHHHhhC-----CCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECceeecCcccCCCcEEEEeCCCc---C
Confidence 34566777776531 367799999999999999999999999999999999999999999999999844443 1
Q ss_pred cCCCCCCcCCccccCHhhHHHHhcccCCC-CCcEEEEecC
Q 002521 619 DALNNTPCLLPSWISQASARQRRGRAGRV-QPGQCYHLYP 657 (913)
Q Consensus 619 d~~~~~~~l~~~~iSka~~~QR~GRAGR~-~~G~c~~L~t 657 (913)
+.+++.||+|||||. .+|.||.++.
T Consensus 539 --------------gls~lhQ~~GRvGR~g~~g~~il~~~ 564 (630)
T TIGR00643 539 --------------GLSQLHQLRGRVGRGDHQSYCLLVYK 564 (630)
T ss_pred --------------CHHHHHHHhhhcccCCCCcEEEEEEC
Confidence 346888999999998 6899999983
No 58
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=2.7e-31 Score=287.81 Aligned_cols=314 Identities=22% Similarity=0.274 Sum_probs=228.8
Q ss_pred HHHHHHHHHHcCCeEEEEcCCCchHHhHHHHHHHHHHHH-----hCCCCceEEEEcchhHHHHHHHHHHHHHHhCCCccc
Q 002521 254 EKERLLQAIARNQVIVISGETGCGKTTQLPQYILESEIE-----SGRGAFCNIICTQPRRISAMAVSERVSAERGEPLGE 328 (913)
Q Consensus 254 ~q~~il~~i~~~~~vII~apTGSGKTt~~~~~ile~~~~-----~~~~~~~~Ilv~qPrr~La~qva~rv~~~~~~~~g~ 328 (913)
.|.++++....+++|+-+|-||||||-++..+++.++.. .+.|+.+.|+| |||+||.|+.....+. +...|.
T Consensus 249 iq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi~vilv--PTrela~Qi~~eaKkf-~K~ygl 325 (731)
T KOG0339|consen 249 IQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVILV--PTRELASQIFSEAKKF-GKAYGL 325 (731)
T ss_pred ccccccccccccccchheeeccCcchhHHHHHHHHHhcchhhhcCCCCCeEEEEe--ccHHHHHHHHHHHHHh-hhhccc
Confidence 377888888999999999999999999999998877653 34566666766 9999999997766553 222221
Q ss_pred --EeeeEE--ec---cccCCCCceEEEEecHHHHHHHhcCC-CCCCceEEEeccccccCcchHHHHHHHHHhCccCccce
Q 002521 329 --TVGYKV--RL---EGMKGKNTHLLFCTSGILLRRLLSDH-NLNGVTHVFVDEIHERGMNEDFLLIVLKDLLPRRRDLR 400 (913)
Q Consensus 329 --~vGy~v--~~---e~~~~~~~~Ivv~T~g~Ll~~l~~~~-~L~~~s~IIIDEaHer~~~~d~ll~llk~ll~~~~~~k 400 (913)
..-|.. .+ ..+. ..+.|+|||||+|++++.-.. .+.+++++||||++ |-+...|...+-...-..+|+.|
T Consensus 326 ~~v~~ygGgsk~eQ~k~Lk-~g~EivVaTPgRlid~VkmKatn~~rvS~LV~DEad-rmfdmGfe~qVrSI~~hirpdrQ 403 (731)
T KOG0339|consen 326 RVVAVYGGGSKWEQSKELK-EGAEIVVATPGRLIDMVKMKATNLSRVSYLVLDEAD-RMFDMGFEPQVRSIKQHIRPDRQ 403 (731)
T ss_pred eEEEeecCCcHHHHHHhhh-cCCeEEEechHHHHHHHHhhcccceeeeEEEEechh-hhhccccHHHHHHHHhhcCCcce
Confidence 122221 11 1122 668999999999999986554 89999999999999 44666666555444445788999
Q ss_pred EEEeccccCH--HHHHhhhCCCCeeccCCccccceeeehhhHHhhhcccccccccccchhhhhHHHHhhhhchhhhhhhH
Q 002521 401 LILMSATLNA--ELFSNYFGGAPTIHIPGFTYPVQAHFLEDVLEMTGYKLTSLNQVDDYGQEKLWKTQRQLLPRKRKNQI 478 (913)
Q Consensus 401 iIlmSATl~~--~~~~~yf~~~~~i~i~g~~~pv~~~yl~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 478 (913)
.|++|||+.. +.+.+-+-..|+-.+.|.. .. ....+
T Consensus 404 tllFsaTf~~kIe~lard~L~dpVrvVqg~v---ge---------------------------------------an~dI 441 (731)
T KOG0339|consen 404 TLLFSATFKKKIEKLARDILSDPVRVVQGEV---GE---------------------------------------ANEDI 441 (731)
T ss_pred EEEeeccchHHHHHHHHHHhcCCeeEEEeeh---hc---------------------------------------cccch
Confidence 9999999954 3444333233333332210 00 00000
Q ss_pred HHHHHHHHhhccccccchhhhhhhccccccccchhhHHHHHHHHhhhcCCCcEEEEcCChHHHHHHHHHHHcCCCCCCCC
Q 002521 479 TALVEDALHKSNFENYSSRARDSLASWTADCIGFNLIEAVLCHICRKECPGAVLVFMTGWEDISCLRDQLKSHPLLGDPN 558 (913)
Q Consensus 479 ~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~li~~ll~~i~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~~~~~ 558 (913)
...+ ..-.........+++|+......|++|||+.-+..++.++..|.-.
T Consensus 442 TQ~V-----------------------~V~~s~~~Kl~wl~~~L~~f~S~gkvlifVTKk~~~e~i~a~Lklk------- 491 (731)
T KOG0339|consen 442 TQTV-----------------------SVCPSEEKKLNWLLRHLVEFSSEGKVLIFVTKKADAEEIAANLKLK------- 491 (731)
T ss_pred hhee-----------------------eeccCcHHHHHHHHHHhhhhccCCcEEEEEeccCCHHHHHHHhccc-------
Confidence 0000 0000112234456777777778899999999999999999999876
Q ss_pred CeEEEEecCCCChHHHHHHhccCCCCccEEEEecchhhhcCCCCCeEEEEeCCCCcceeecCCCCCCcCCccccCHhhHH
Q 002521 559 RVLLLTCHGSMPTSEQKFIFEKAPPNIRKIVLATNMAEASITINDIVFVVDCGKAKETTYDALNNTPCLLPSWISQASAR 638 (913)
Q Consensus 559 ~~~v~~lHs~l~~~er~~v~~~f~~g~~kVLVATniae~GIdIp~v~~VId~g~~k~~~yd~~~~~~~l~~~~iSka~~~ 638 (913)
++.|..+||+|.+.+|.+++..|+.+...|+|||+++++|+|||++..||++++.+ .+ ..+.
T Consensus 492 ~~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargldI~~ikTVvnyD~ar--------dI----------dtht 553 (731)
T KOG0339|consen 492 GFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIPSIKTVVNYDFAR--------DI----------DTHT 553 (731)
T ss_pred cceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCccccceeecccccc--------hh----------HHHH
Confidence 89999999999999999999999999999999999999999999999999955444 33 3566
Q ss_pred HHhcccCCC-CCcEEEEecChhhHH
Q 002521 639 QRRGRAGRV-QPGQCYHLYPRCVYE 662 (913)
Q Consensus 639 QR~GRAGR~-~~G~c~~L~t~~~~~ 662 (913)
||+||+||. ..|..|.|.|+.+-+
T Consensus 554 hrigrtgRag~kGvayTlvTeKDa~ 578 (731)
T KOG0339|consen 554 HRIGRTGRAGEKGVAYTLVTEKDAE 578 (731)
T ss_pred HHhhhcccccccceeeEEechhhHH
Confidence 999999999 679999999987644
No 59
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=5.1e-31 Score=286.25 Aligned_cols=324 Identities=18% Similarity=0.225 Sum_probs=212.7
Q ss_pred CcHHHHHHHHHHHH---------cCCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHHHH
Q 002521 250 PSFKEKERLLQAIA---------RNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVSA 320 (913)
Q Consensus 250 P~~~~q~~il~~i~---------~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv~~ 320 (913)
-.|+.|.++++.+. ..++|.|.||||||||+++.++|.+.+-.+ .-+..+.+|++|+|+|+.|++..|..
T Consensus 159 ~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R-~v~~LRavVivPtr~L~~QV~~~f~~ 237 (620)
T KOG0350|consen 159 RLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSR-PVKRLRAVVIVPTRELALQVYDTFKR 237 (620)
T ss_pred cccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccC-CccceEEEEEeeHHHHHHHHHHHHHH
Confidence 34455888888773 257899999999999999999999877433 22334555556999999999999977
Q ss_pred HhCCCcccEeeeEEeccc-------cCCC----CceEEEEecHHHHHHHhcCC--CCCCceEEEecccccc--CcchHHH
Q 002521 321 ERGEPLGETVGYKVRLEG-------MKGK----NTHLLFCTSGILLRRLLSDH--NLNGVTHVFVDEIHER--GMNEDFL 385 (913)
Q Consensus 321 ~~~~~~g~~vGy~v~~e~-------~~~~----~~~Ivv~T~g~Ll~~l~~~~--~L~~~s~IIIDEaHer--~~~~d~l 385 (913)
.... .|..|+......+ ..+. ..+|+|+|||+|.++|.+.+ .|+++.++|||||+.. -...+++
T Consensus 238 ~~~~-tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~LrfLVIDEADRll~qsfQ~Wl 316 (620)
T KOG0350|consen 238 LNSG-TGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKSFDLKHLRFLVIDEADRLLDQSFQEWL 316 (620)
T ss_pred hccC-CceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCCcchhhceEEEechHHHHHHHHHHHHH
Confidence 5432 3333443322211 1122 34999999999999998665 8999999999999942 1222333
Q ss_pred HHHHH------------HhCcc-------------------CccceEEEecccc--CHHHHHhhhCCCC-eeccCCcccc
Q 002521 386 LIVLK------------DLLPR-------------------RRDLRLILMSATL--NAELFSNYFGGAP-TIHIPGFTYP 431 (913)
Q Consensus 386 l~llk------------~ll~~-------------------~~~~kiIlmSATl--~~~~~~~yf~~~~-~i~i~g~~~p 431 (913)
..++- .+++. .+.+.-+.+|||+ ++..+.++--+.| .+++.+.
T Consensus 317 ~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~satLsqdP~Kl~~l~l~~Prl~~v~~~--- 393 (620)
T KOG0350|consen 317 DTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLVFSATLSQDPSKLKDLTLHIPRLFHVSKP--- 393 (620)
T ss_pred HHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhhcchhhhcChHHHhhhhcCCCceEEeecc---
Confidence 22211 11111 1233456667766 4445544433222 3333211
Q ss_pred ceeeehhhHHhhhcccccccccccchhhhhHHHHhhhhchhhhhhhHHHHHHHHHhhccccccchhhhhhhccccccccc
Q 002521 432 VQAHFLEDVLEMTGYKLTSLNQVDDYGQEKLWKTQRQLLPRKRKNQITALVEDALHKSNFENYSSRARDSLASWTADCIG 511 (913)
Q Consensus 432 v~~~yl~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~~~ 511 (913)
.-..| .+.+ .+.. ..-...
T Consensus 394 ~~~ry----------slp~------------------------------~l~~---------------------~~vv~~ 412 (620)
T KOG0350|consen 394 LIGRY----------SLPS------------------------------SLSH---------------------RLVVTE 412 (620)
T ss_pred cceee----------ecCh------------------------------hhhh---------------------ceeecc
Confidence 00000 0000 0000 000000
Q ss_pred hhhHHHHHHHHhhhcCCCcEEEEcCChHHHHHHHHHHHcCCCCCCCCCeEEEEecCCCChHHHHHHhccCCCCccEEEEe
Q 002521 512 FNLIEAVLCHICRKECPGAVLVFMTGWEDISCLRDQLKSHPLLGDPNRVLLLTCHGSMPTSEQKFIFEKAPPNIRKIVLA 591 (913)
Q Consensus 512 ~~li~~ll~~i~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~g~~kVLVA 591 (913)
.......+.++....+..++|+|+++.+.+.+++..|.-. ++ ..++.+-.+.|+++...|.+.++.|..|.++||||
T Consensus 413 ~~~kpl~~~~lI~~~k~~r~lcf~~S~~sa~Rl~~~L~v~--~~-~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIc 489 (620)
T KOG0350|consen 413 PKFKPLAVYALITSNKLNRTLCFVNSVSSANRLAHVLKVE--FC-SDNFKVSEFTGQLNGKRRYKMLEKFAKGDINVLIC 489 (620)
T ss_pred cccchHhHHHHHHHhhcceEEEEecchHHHHHHHHHHHHH--hc-cccchhhhhhhhhhHHHHHHHHHHHhcCCceEEEe
Confidence 1111223344445556678999999999999999999821 11 12555666899999999999999999999999999
Q ss_pred cchhhhcCCCCCeEEEEeCCCCcceeecCCCCCCcCCccccCHhhHHHHhcccCCC-CCcEEEEecChhh
Q 002521 592 TNMAEASITINDIVFVVDCGKAKETTYDALNNTPCLLPSWISQASARQRRGRAGRV-QPGQCYHLYPRCV 660 (913)
Q Consensus 592 Tniae~GIdIp~v~~VId~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~-~~G~c~~L~t~~~ 660 (913)
||++++|||+.+|+.||+ ||++. |--.|+||+||++|. +.|.||.|.++..
T Consensus 490 SD~laRGiDv~~v~~VIN--------Yd~P~----------~~ktyVHR~GRTARAgq~G~a~tll~~~~ 541 (620)
T KOG0350|consen 490 SDALARGIDVNDVDNVIN--------YDPPA----------SDKTYVHRAGRTARAGQDGYAITLLDKHE 541 (620)
T ss_pred hhhhhcCCcccccceEee--------cCCCc----------hhhHHHHhhcccccccCCceEEEeecccc
Confidence 999999999999999999 55554 444677999999999 8899999988654
No 60
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=99.97 E-value=3.1e-30 Score=276.14 Aligned_cols=318 Identities=19% Similarity=0.239 Sum_probs=225.7
Q ss_pred hhhhHHhhhcCCCcHHHHHHHHHHHHcCCeEEEEcCCCchHHhHHHHHHHHHHHHhC------CCCceEEEEcchhHHHH
Q 002521 238 EGNKMLDFRKSLPSFKEKERLLQAIARNQVIVISGETGCGKTTQLPQYILESEIESG------RGAFCNIICTQPRRISA 311 (913)
Q Consensus 238 ~~~~l~~~r~~lP~~~~q~~il~~i~~~~~vII~apTGSGKTt~~~~~ile~~~~~~------~~~~~~Ilv~qPrr~La 311 (913)
..+.+-+..+.-|.-. |+.+++.+++|++++.-|.||||||.++.+++++.++... .+..+.|++ |||+||
T Consensus 30 llkAi~~lG~ekpTlI-Qs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~iLv--PTkEL~ 106 (569)
T KOG0346|consen 30 LLKAITKLGWEKPTLI-QSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVILV--PTKELA 106 (569)
T ss_pred HHHHHHHhCcCCcchh-hhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEEEe--chHHHH
Confidence 4455555566666654 5667777789999999999999999999999999888643 344455555 999999
Q ss_pred HHHHHHHHHHhCC--------CcccEeeeEEeccccCCCCceEEEEecHHHHHHHhcCC--CCCCceEEEeccccc---c
Q 002521 312 MAVSERVSAERGE--------PLGETVGYKVRLEGMKGKNTHLLFCTSGILLRRLLSDH--NLNGVTHVFVDEIHE---R 378 (913)
Q Consensus 312 ~qva~rv~~~~~~--------~~g~~vGy~v~~e~~~~~~~~Ivv~T~g~Ll~~l~~~~--~L~~~s~IIIDEaHe---r 378 (913)
.|++..+.+..-. .+.....-.+.. ......++|+|+||+.+++++..+. .+..++++|+|||+- .
T Consensus 107 qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~-~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvDEADLllsf 185 (569)
T KOG0346|consen 107 QQVYKVIEKLVEYCSKDLRAINLASSMSDSVNS-VALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVDEADLLLSF 185 (569)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhcccchHHHH-HHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEechhhhhhhc
Confidence 9999988764211 111111100100 1223568999999999999998876 788999999999993 4
Q ss_pred CcchHHHHHHHHHhCccCccceEEEeccccC--HHHHHhhhCCCCee-ccCCccccc----eeeehhhHHhhhccccccc
Q 002521 379 GMNEDFLLIVLKDLLPRRRDLRLILMSATLN--AELFSNYFGGAPTI-HIPGFTYPV----QAHFLEDVLEMTGYKLTSL 451 (913)
Q Consensus 379 ~~~~d~ll~llk~ll~~~~~~kiIlmSATl~--~~~~~~yf~~~~~i-~i~g~~~pv----~~~yl~di~~~~~~~~~~~ 451 (913)
|++.|+... ...++ +..|.++||||++ ...+...|-..|++ .+.....|. ..+++
T Consensus 186 GYeedlk~l--~~~LP--r~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~el~~~dqL~Qy~v-------------- 247 (569)
T KOG0346|consen 186 GYEEDLKKL--RSHLP--RIYQCFLMSATLSDDVQALKKLFLHNPVILKLTEGELPNPDQLTQYQV-------------- 247 (569)
T ss_pred ccHHHHHHH--HHhCC--chhhheeehhhhhhHHHHHHHHhccCCeEEEeccccCCCcccceEEEE--------------
Confidence 665554332 24444 5569999999994 45677776544443 333222221 11111
Q ss_pred ccccchhhhhHHHHhhhhchhhhhhhHHHHHHHHHhhccccccchhhhhhhccccccccchhhHHHHHHHHhh-hcCCCc
Q 002521 452 NQVDDYGQEKLWKTQRQLLPRKRKNQITALVEDALHKSNFENYSSRARDSLASWTADCIGFNLIEAVLCHICR-KECPGA 530 (913)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~li~~ll~~i~~-~~~~g~ 530 (913)
.+-..+ +..++..+++ ..-.|+
T Consensus 248 --------------------------------------------------------~cse~D-KflllyallKL~LI~gK 270 (569)
T KOG0346|consen 248 --------------------------------------------------------KCSEED-KFLLLYALLKLRLIRGK 270 (569)
T ss_pred --------------------------------------------------------Eeccch-hHHHHHHHHHHHHhcCc
Confidence 000000 0011111111 123689
Q ss_pred EEEEcCChHHHHHHHHHHHcCCCCCCCCCeEEEEecCCCChHHHHHHhccCCCCccEEEEecc-----------------
Q 002521 531 VLVFMTGWEDISCLRDQLKSHPLLGDPNRVLLLTCHGSMPTSEQKFIFEKAPPNIRKIVLATN----------------- 593 (913)
Q Consensus 531 iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~g~~kVLVATn----------------- 593 (913)
+|||+|+.+.+.++.-.|+.. ++..+.+.|.||..-|..|++.|..|...||||||
T Consensus 271 sliFVNtIdr~YrLkLfLeqF-------GiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~eee~kgk~~ 343 (569)
T KOG0346|consen 271 SLIFVNTIDRCYRLKLFLEQF-------GIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEEEVKGKSD 343 (569)
T ss_pred eEEEEechhhhHHHHHHHHHh-------CcHhhhhcccccccchhhHHHHhhCcceeEEEEccCccchhhhhcccccccc
Confidence 999999999999999999986 78888999999999999999999999999999999
Q ss_pred ------------------hhhhcCCCCCeEEEEeCCCCcceeecCCCCCCcCCccccCHhhHHHHhcccCCC-CCcEEEE
Q 002521 594 ------------------MAEASITINDIVFVVDCGKAKETTYDALNNTPCLLPSWISQASARQRRGRAGRV-QPGQCYH 654 (913)
Q Consensus 594 ------------------iae~GIdIp~v~~VId~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~-~~G~c~~ 654 (913)
-+.+|||+..|..|||+++|. +..+|+||+||++|. .+|.+..
T Consensus 344 e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~------------------t~~sYIHRvGRTaRg~n~GtalS 405 (569)
T KOG0346|consen 344 EKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPE------------------TVTSYIHRVGRTARGNNKGTALS 405 (569)
T ss_pred ccCCCCccccccccCchhchhccccchheeeeeecCCCC------------------chHHHHHhccccccCCCCCceEE
Confidence 157899999999999976665 455888999999999 8899888
Q ss_pred ecChh
Q 002521 655 LYPRC 659 (913)
Q Consensus 655 L~t~~ 659 (913)
+....
T Consensus 406 fv~P~ 410 (569)
T KOG0346|consen 406 FVSPK 410 (569)
T ss_pred Eecch
Confidence 87654
No 61
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.97 E-value=1.7e-29 Score=292.51 Aligned_cols=389 Identities=19% Similarity=0.232 Sum_probs=220.7
Q ss_pred hhcCCCcHHHHHHHHHHHHcCCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHHHHHhCC
Q 002521 245 FRKSLPSFKEKERLLQAIARNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVSAERGE 324 (913)
Q Consensus 245 ~r~~lP~~~~q~~il~~i~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv~~~~~~ 324 (913)
.-..+++..||.++....+ ++++||++|||+|||.++...+++.+-. -+.++||+++|++-|+.|....+.. ++.
T Consensus 57 ~p~~~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw---~p~~KiVF~aP~~pLv~QQ~a~~~~-~~~ 131 (746)
T KOG0354|consen 57 YPTNLELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEW---RPKGKVVFLAPTRPLVNQQIACFSI-YLI 131 (746)
T ss_pred ccCcccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhc---CCcceEEEeeCCchHHHHHHHHHhh-ccC
Confidence 4477899999999999988 9999999999999999999888887632 3347999999999999998855544 332
Q ss_pred CcccEeeeEEecc-----ccCCCCceEEEEecHHHHHHHhcCC--CCCCceEEEeccccccCcchHHHHHHHHHhCc-cC
Q 002521 325 PLGETVGYKVRLE-----GMKGKNTHLLFCTSGILLRRLLSDH--NLNGVTHVFVDEIHERGMNEDFLLIVLKDLLP-RR 396 (913)
Q Consensus 325 ~~g~~vGy~v~~e-----~~~~~~~~Ivv~T~g~Ll~~l~~~~--~L~~~s~IIIDEaHer~~~~d~ll~llk~ll~-~~ 396 (913)
.. ...|...... ...-...+|.|+||++|.+.|.+.. .|+.++++||||||+-.-+.-+- .+++.++. ..
T Consensus 132 ~~-~~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~~Y~-~Vmr~~l~~k~ 209 (746)
T KOG0354|consen 132 PY-SVTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNHPYN-NIMREYLDLKN 209 (746)
T ss_pred cc-cceeeccCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEcccccccccccHH-HHHHHHHHhhh
Confidence 21 1111110000 0111357999999999999987654 57899999999999432222222 22222222 22
Q ss_pred ccceEEEecccc--CHHHHHhhhCCC-CeeccC--------------Cccccceeee------------hhhHHhhhc-c
Q 002521 397 RDLRLILMSATL--NAELFSNYFGGA-PTIHIP--------------GFTYPVQAHF------------LEDVLEMTG-Y 446 (913)
Q Consensus 397 ~~~kiIlmSATl--~~~~~~~yf~~~-~~i~i~--------------g~~~pv~~~y------------l~di~~~~~-~ 446 (913)
...|+|++|||+ +.+...++..+- ..+.+. -..+|++... ++.++.... .
T Consensus 210 ~~~qILgLTASpG~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~~i~p~l~~l~~~ 289 (746)
T KOG0354|consen 210 QGNQILGLTASPGSKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFGMIIEPLLQQLQEE 289 (746)
T ss_pred ccccEEEEecCCCccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHHHHHHHHHHHHHhc
Confidence 233999999999 444555555421 001110 1123333100 011111110 0
Q ss_pred ccccccccc-chhhhhHHHHhhhhch--hhh----------h----hhHHHHHH--HHH-------hhccccccchh---
Q 002521 447 KLTSLNQVD-DYGQEKLWKTQRQLLP--RKR----------K----NQITALVE--DAL-------HKSNFENYSSR--- 497 (913)
Q Consensus 447 ~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~----------~----~~i~~~v~--~~l-------~~~~~~~~~~~--- 497 (913)
.+.+..... .|.............. ... . ..+...+. .++ .......+...
T Consensus 290 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e~~~~k~~~~~~e 369 (746)
T KOG0354|consen 290 GLIEISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYEEVALKKYLKLELE 369 (746)
T ss_pred CccccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccccchhHHHHHHhc
Confidence 000000000 0000000000000000 000 0 00000000 000 00000000000
Q ss_pred ------hhh---hhccc--ccc--ccchhhHHHHHHHHhhhcCCCcEEEEcCChHHHHHHHHHHHcCCCCCCCCCeEEEE
Q 002521 498 ------ARD---SLASW--TAD--CIGFNLIEAVLCHICRKECPGAVLVFMTGWEDISCLRDQLKSHPLLGDPNRVLLLT 564 (913)
Q Consensus 498 ------~~~---~l~~~--~~~--~~~~~li~~ll~~i~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~v~~ 564 (913)
... .++.. ++. ...++.....+.......+...+|||+.+++.+..+..+|...-.++-.+...+..
T Consensus 370 ~~~~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq 449 (746)
T KOG0354|consen 370 ARLIRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELGIKAEIFIGQ 449 (746)
T ss_pred chhhHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhcccccceeeec
Confidence 000 00000 001 11122233333333445567789999999999999999998521121122333332
Q ss_pred ec----CCCChHHHHHHhccCCCCccEEEEecchhhhcCCCCCeEEEEeCCCCcceeecCCCCCCcCCccccCHhhHHHH
Q 002521 565 CH----GSMPTSEQKFIFEKAPPNIRKIVLATNMAEASITINDIVFVVDCGKAKETTYDALNNTPCLLPSWISQASARQR 640 (913)
Q Consensus 565 lH----s~l~~~er~~v~~~f~~g~~kVLVATniae~GIdIp~v~~VId~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR 640 (913)
-+ .+|++.+|+++++.|+.|..+|||||+|+|+|+||++|+.||- ||..++ ....+||
T Consensus 450 ~~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIc--------Yd~~sn----------pIrmIQr 511 (746)
T KOG0354|consen 450 GKSTQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVIC--------YDYSSN----------PIRMVQR 511 (746)
T ss_pred cccccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCcccccEEEE--------ecCCcc----------HHHHHHH
Confidence 22 3899999999999999999999999999999999999999998 555443 3366799
Q ss_pred hcccCCCCCcEEEEecChh
Q 002521 641 RGRAGRVQPGQCYHLYPRC 659 (913)
Q Consensus 641 ~GRAGR~~~G~c~~L~t~~ 659 (913)
+|| ||.+.|+|+.|++..
T Consensus 512 rGR-gRa~ns~~vll~t~~ 529 (746)
T KOG0354|consen 512 RGR-GRARNSKCVLLTTGS 529 (746)
T ss_pred hcc-ccccCCeEEEEEcch
Confidence 999 999999999999943
No 62
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.97 E-value=3.8e-29 Score=298.28 Aligned_cols=349 Identities=16% Similarity=0.136 Sum_probs=203.6
Q ss_pred cCCCcHHHHHHHHHHHHcCC-eEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHHHHHhCCC
Q 002521 247 KSLPSFKEKERLLQAIARNQ-VIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVSAERGEP 325 (913)
Q Consensus 247 ~~lP~~~~q~~il~~i~~~~-~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv~~~~~~~ 325 (913)
..+..+++|+++++.+..++ ++++.+|||||||.++..+++-.. ......-++++++|||+||.|+++.+.+.....
T Consensus 12 ~G~~PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~~--~~~~~~~rLv~~vPtReLa~Qi~~~~~~~~k~l 89 (844)
T TIGR02621 12 HGYSPFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAVE--IGAKVPRRLVYVVNRRTVVDQVTEEAEKIGERL 89 (844)
T ss_pred hCCCCCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhcccc--ccccccceEEEeCchHHHHHHHHHHHHHHHHHh
Confidence 34447788999999999987 677789999999987765555321 112122355556799999999999886643211
Q ss_pred c----------------------ccEeeeEEecc------ccCCCCceEEEEecHHHHHHHhcC-------------CCC
Q 002521 326 L----------------------GETVGYKVRLE------GMKGKNTHLLFCTSGILLRRLLSD-------------HNL 364 (913)
Q Consensus 326 ~----------------------g~~vGy~v~~e------~~~~~~~~Ivv~T~g~Ll~~l~~~-------------~~L 364 (913)
. ...+..-.... ......++|+|+|++.+.+..... ..+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~D~i~sr~L~~gYg~~~~~~pi~ag~L 169 (844)
T TIGR02621 90 PDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTVDMIGSRLLFSGYGCGFKSRPLHAGFL 169 (844)
T ss_pred cccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECHHHHcCCccccccccccccccchhhhh
Confidence 0 01111111110 112245799999975554433210 026
Q ss_pred CCceEEEeccccccCcchHHHHHHHHHhC-c-cCccceEEEeccccCHH--HHHhhhC-CCCeeccCCccccce--eeeh
Q 002521 365 NGVTHVFVDEIHERGMNEDFLLIVLKDLL-P-RRRDLRLILMSATLNAE--LFSNYFG-GAPTIHIPGFTYPVQ--AHFL 437 (913)
Q Consensus 365 ~~~s~IIIDEaHer~~~~d~ll~llk~ll-~-~~~~~kiIlmSATl~~~--~~~~yf~-~~~~i~i~g~~~pv~--~~yl 437 (913)
+++++||+||||......+.+..+++.+. + ...+.|+++||||++.+ .+...+. +...+.+.......+ .+|.
T Consensus 170 ~~v~~LVLDEADLd~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~~i~V~~~~l~a~ki~q~v 249 (844)
T TIGR02621 170 GQDALIVHDEAHLEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAEDYKHPVLKKRLAAKKIVKLV 249 (844)
T ss_pred ccceEEEEehhhhccccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccCCceeecccccccccceEEEE
Confidence 88999999999944333444444444321 1 11236999999999754 2222232 211111111000000 0000
Q ss_pred hhHHhhhcccccccccccchhhhhHHHHhhhhchhhhhhhHHHHHHHHHhhccccccchhhhhhhccccccccchhhHHH
Q 002521 438 EDVLEMTGYKLTSLNQVDDYGQEKLWKTQRQLLPRKRKNQITALVEDALHKSNFENYSSRARDSLASWTADCIGFNLIEA 517 (913)
Q Consensus 438 ~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~li~~ 517 (913)
. ......+.. ...
T Consensus 250 ~---------------------------------v~~e~Kl~~----------------------------------lv~ 262 (844)
T TIGR02621 250 P---------------------------------PSDEKFLST----------------------------------MVK 262 (844)
T ss_pred e---------------------------------cChHHHHHH----------------------------------HHH
Confidence 0 000000000 001
Q ss_pred HHHHHhhhcCCCcEEEEcCChHHHHHHHHHHHcCCCCCCCCCeEEEEecCCCChHHHH-----HHhccCCC----Cc---
Q 002521 518 VLCHICRKECPGAVLVFMTGWEDISCLRDQLKSHPLLGDPNRVLLLTCHGSMPTSEQK-----FIFEKAPP----NI--- 585 (913)
Q Consensus 518 ll~~i~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lHs~l~~~er~-----~v~~~f~~----g~--- 585 (913)
.+..+. ...++++||||+|++.++.+++.|... ++ ..+||+|++.+|. .+++.|++ |.
T Consensus 263 ~L~~ll-~e~g~~vLVF~NTv~~Aq~L~~~L~~~-------g~--~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~ 332 (844)
T TIGR02621 263 ELNLLM-KDSGGAILVFCRTVKHVRKVFAKLPKE-------KF--ELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRAR 332 (844)
T ss_pred HHHHHH-hhCCCcEEEEECCHHHHHHHHHHHHhc-------CC--eEeeCCCCHHHHhhHHHHHHHHHHhcccccccccc
Confidence 111122 234678999999999999999999875 33 7899999999999 78888987 44
Q ss_pred ----cEEEEecchhhhcCCCCCeEEEEeCCCCcceeecCCCCCCcCCccccCHhhHHHHhcccCCCCC--cEEEEecChh
Q 002521 586 ----RKIVLATNMAEASITINDIVFVVDCGKAKETTYDALNNTPCLLPSWISQASARQRRGRAGRVQP--GQCYHLYPRC 659 (913)
Q Consensus 586 ----~kVLVATniae~GIdIp~v~~VId~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~~~--G~c~~L~t~~ 659 (913)
.+|||||+++|+||||+. ++||+ ++. ..++|+||+||+||.+. |..+.+++.+
T Consensus 333 ~~~g~~ILVATdVaerGLDId~-d~VI~--------d~a------------P~esyIQRiGRtgR~G~~~~~~i~vv~~~ 391 (844)
T TIGR02621 333 PQQGTVYLVCTSAGEVGVNISA-DHLVC--------DLA------------PFESMQQRFGRVNRFGELQACQIAVVHLD 391 (844)
T ss_pred ccccceEEeccchhhhcccCCc-ceEEE--------CCC------------CHHHHHHHhcccCCCCCCCCceEEEEeec
Confidence 689999999999999987 67775 211 23689999999999833 3323333221
Q ss_pred hHHhh-hhCCCCcccccChhhHHHHHhhcCCCCHHHH
Q 002521 660 VYEAF-AEYQLPELLRTPLNSLCLQIKSLQVGSIGEF 695 (913)
Q Consensus 660 ~~~~l-~~~~~pEi~r~~L~~~~L~lk~l~~~~~~~f 695 (913)
.-..- ...--|+++...+..+.+..+..+..++..|
T Consensus 392 ~~~~~~~~vY~~~~l~~t~~~L~~~~~~~~~~~~~al 428 (844)
T TIGR02621 392 LGKDQDFDVYGKKIDKSTWSTLKKLQQLKGKNKRAAL 428 (844)
T ss_pred cCCCcccCCCCHHHHHHHHHHHHHHHhccccCCHHHH
Confidence 00000 0111356766666655555554555555555
No 63
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=99.97 E-value=3.7e-31 Score=278.30 Aligned_cols=311 Identities=21% Similarity=0.310 Sum_probs=213.4
Q ss_pred HHHHHHHHHHHcCCeEEEEcCCCchHHhHHHHHHHHHHHH--------hCCCCceEEEEcchhHHHHHHHHHHHHHHhC-
Q 002521 253 KEKERLLQAIARNQVIVISGETGCGKTTQLPQYILESEIE--------SGRGAFCNIICTQPRRISAMAVSERVSAERG- 323 (913)
Q Consensus 253 ~~q~~il~~i~~~~~vII~apTGSGKTt~~~~~ile~~~~--------~~~~~~~~Ilv~qPrr~La~qva~rv~~~~~- 323 (913)
+.|-+-++.++.+++.|-.|-||||||+.+.++++-.+++ .+.|+.+.|+| |.|+||.|.++-+.....
T Consensus 195 pIQvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~gLiic--PSRELArQt~~iie~~~~~ 272 (610)
T KOG0341|consen 195 PIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPYGLIIC--PSRELARQTHDIIEQYVAA 272 (610)
T ss_pred ceeecCcceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCCCeeEEEc--CcHHHHHHHHHHHHHHHHH
Confidence 3355667778899999999999999998877766554443 45788899999 999999999887765431
Q ss_pred --C---C---cccEe-eeEEecc-ccCCCCceEEEEecHHHHHHHhcCC-CCCCceEEEeccccc---cCcchHHHHHHH
Q 002521 324 --E---P---LGETV-GYKVRLE-GMKGKNTHLLFCTSGILLRRLLSDH-NLNGVTHVFVDEIHE---RGMNEDFLLIVL 389 (913)
Q Consensus 324 --~---~---~g~~v-Gy~v~~e-~~~~~~~~Ivv~T~g~Ll~~l~~~~-~L~~~s~IIIDEaHe---r~~~~d~ll~ll 389 (913)
+ + .+..+ |..++-. .......+|+|+|||+|.++|.... .|+-..++.+|||+. +|+..|+-.++
T Consensus 273 L~e~g~P~lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~KK~~sLd~CRyL~lDEADRmiDmGFEddir~iF- 351 (610)
T KOG0341|consen 273 LQEAGYPELRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAKKIMSLDACRYLTLDEADRMIDMGFEDDIRTIF- 351 (610)
T ss_pred HHhcCChhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHHhhccHHHHHHhhhhhHHHHhhccchhhHHHHH-
Confidence 1 0 00111 1112111 1223678999999999999997665 788899999999994 57777655443
Q ss_pred HHhCccCccceEEEeccccCHHHHHhhhCCCCeeccCCccccceeeehhhHHhhhcccccccccccchhhhhHHHHhhhh
Q 002521 390 KDLLPRRRDLRLILMSATLNAELFSNYFGGAPTIHIPGFTYPVQAHFLEDVLEMTGYKLTSLNQVDDYGQEKLWKTQRQL 469 (913)
Q Consensus 390 k~ll~~~~~~kiIlmSATl~~~~~~~yf~~~~~i~i~g~~~pv~~~yl~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (913)
...+ ...|.+++|||++.. ++.|-..+ -..||.+..=. .|.. .+ +..
T Consensus 352 -~~FK--~QRQTLLFSATMP~K-IQ~FAkSA-------LVKPvtvNVGR-----AGAA-----sl---------dVi--- 398 (610)
T KOG0341|consen 352 -SFFK--GQRQTLLFSATMPKK-IQNFAKSA-------LVKPVTVNVGR-----AGAA-----SL---------DVI--- 398 (610)
T ss_pred -HHHh--hhhheeeeeccccHH-HHHHHHhh-------cccceEEeccc-----cccc-----ch---------hHH---
Confidence 2222 234899999999764 22222111 01122111000 0000 00 000
Q ss_pred chhhhhhhHHHHHHHHHhhccccccchhhhhhhccccccccchhhHHHHHHHHhhhcCCCcEEEEcCChHHHHHHHHHHH
Q 002521 470 LPRKRKNQITALVEDALHKSNFENYSSRARDSLASWTADCIGFNLIEAVLCHICRKECPGAVLVFMTGWEDISCLRDQLK 549 (913)
Q Consensus 470 ~~~~~~~~i~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~li~~ll~~i~~~~~~g~iLVF~~~~~~i~~l~~~L~ 549 (913)
+-.+++.+. ..+..++..+ .....++|||+..+.++..+.++|-
T Consensus 399 -------QevEyVkqE---------------------------aKiVylLeCL--QKT~PpVLIFaEkK~DVD~IhEYLL 442 (610)
T KOG0341|consen 399 -------QEVEYVKQE---------------------------AKIVYLLECL--QKTSPPVLIFAEKKADVDDIHEYLL 442 (610)
T ss_pred -------HHHHHHHhh---------------------------hhhhhHHHHh--ccCCCceEEEeccccChHHHHHHHH
Confidence 000111110 1111222222 2345679999999999999999998
Q ss_pred cCCCCCCCCCeEEEEecCCCChHHHHHHhccCCCCccEEEEecchhhhcCCCCCeEEEEeCCCCcceeecCCCCCCcCCc
Q 002521 550 SHPLLGDPNRVLLLTCHGSMPTSEQKFIFEKAPPNIRKIVLATNMAEASITINDIVFVVDCGKAKETTYDALNNTPCLLP 629 (913)
Q Consensus 550 ~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~g~~kVLVATniae~GIdIp~v~~VId~g~~k~~~yd~~~~~~~l~~ 629 (913)
-. ++.++.+|||-.+++|...++.|+.|+.+|||||++|..|+|+|++.+|||++.|.
T Consensus 443 lK-------GVEavaIHGGKDQedR~~ai~afr~gkKDVLVATDVASKGLDFp~iqHVINyDMP~--------------- 500 (610)
T KOG0341|consen 443 LK-------GVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVATDVASKGLDFPDIQHVINYDMPE--------------- 500 (610)
T ss_pred Hc-------cceeEEeecCcchhHHHHHHHHHhcCCCceEEEecchhccCCCccchhhccCCChH---------------
Confidence 65 88999999999999999999999999999999999999999999999999966655
Q ss_pred cccCHhhHHHHhcccCCC-CCcEEEEecChhh
Q 002521 630 SWISQASARQRRGRAGRV-QPGQCYHLYPRCV 660 (913)
Q Consensus 630 ~~iSka~~~QR~GRAGR~-~~G~c~~L~t~~~ 660 (913)
...+|.||+||+||. ..|.+-.++.+..
T Consensus 501 ---eIENYVHRIGRTGRsg~~GiATTfINK~~ 529 (610)
T KOG0341|consen 501 ---EIENYVHRIGRTGRSGKTGIATTFINKNQ 529 (610)
T ss_pred ---HHHHHHHHhcccCCCCCcceeeeeecccc
Confidence 344889999999999 7899888887654
No 64
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.97 E-value=1.7e-29 Score=285.87 Aligned_cols=300 Identities=20% Similarity=0.241 Sum_probs=190.5
Q ss_pred eEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHHHHHhCCCcccEeeeEE------e-----
Q 002521 267 VIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVSAERGEPLGETVGYKV------R----- 335 (913)
Q Consensus 267 ~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv~~~~~~~~g~~vGy~v------~----- 335 (913)
+++|+||||||||+++++++++.+.. . ...+++++.|+++|+.|+++++...++..++...|... .
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~-~--~~~~ii~v~P~~~L~~q~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 77 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKS-Q--KADRVIIALPTRATINAMYRRAKELFGSNLGLLHSSSSFKRIKEMGDSEE 77 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhh-C--CCCeEEEEeehHHHHHHHHHHHHHHhCcccEEeeccHHHHHHhccCCchh
Confidence 47899999999999999999987532 2 23477888899999999999999987765543222110 0
Q ss_pred ccc---------cCCCCceEEEEecHHHHHHHhcCC-----CC--CCceEEEeccccccCcc-hHHHHHHHHHhCccCcc
Q 002521 336 LEG---------MKGKNTHLLFCTSGILLRRLLSDH-----NL--NGVTHVFVDEIHERGMN-EDFLLIVLKDLLPRRRD 398 (913)
Q Consensus 336 ~e~---------~~~~~~~Ivv~T~g~Ll~~l~~~~-----~L--~~~s~IIIDEaHer~~~-~d~ll~llk~ll~~~~~ 398 (913)
.+. ......+|+++||+.++..+.... .+ -..++|||||+|...-. .+++..+++.+. ..+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~l~~~l~~l~--~~~ 155 (358)
T TIGR01587 78 FEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLALILAVLEVLK--DND 155 (358)
T ss_pred HHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHHHHHHHHHHH--HcC
Confidence 000 001235799999999998776521 11 12389999999965422 233444444333 346
Q ss_pred ceEEEeccccCHHHHHhhhCCCCeeccCCccccceeeehhhHHhhhcccccccccccchhhhhHHHHhhhhchhhhhhhH
Q 002521 399 LRLILMSATLNAELFSNYFGGAPTIHIPGFTYPVQAHFLEDVLEMTGYKLTSLNQVDDYGQEKLWKTQRQLLPRKRKNQI 478 (913)
Q Consensus 399 ~kiIlmSATl~~~~~~~yf~~~~~i~i~g~~~pv~~~yl~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 478 (913)
.++|+||||++ +.+.+|+.......... .++.... .. ...+.. . .
T Consensus 156 ~~~i~~SATlp-~~l~~~~~~~~~~~~~~-~~~~~~~--~~---~~~~~~---------------------~-~------ 200 (358)
T TIGR01587 156 VPILLMSATLP-KFLKEYAEKIGYVEFNE-PLDLKEE--RR---FERHRF---------------------I-K------ 200 (358)
T ss_pred CCEEEEecCch-HHHHHHHhcCCCccccc-CCCCccc--cc---cccccc---------------------e-e------
Confidence 78999999997 44666664321110000 0000000 00 000000 0 0
Q ss_pred HHHHHHHHhhccccccchhhhhhhccccccccchhhHHHHHHHHhhhcCCCcEEEEcCChHHHHHHHHHHHcCCCCCCCC
Q 002521 479 TALVEDALHKSNFENYSSRARDSLASWTADCIGFNLIEAVLCHICRKECPGAVLVFMTGWEDISCLRDQLKSHPLLGDPN 558 (913)
Q Consensus 479 ~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~li~~ll~~i~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~~~~~ 558 (913)
.. .........+..++.. ...++++||||+++++++.+++.|.... .
T Consensus 201 ---~~----------------------~~~~~~~~~l~~l~~~---~~~~~~~lVf~~t~~~~~~~~~~L~~~~-----~ 247 (358)
T TIGR01587 201 ---IE----------------------SDKVGEISSLERLLEF---IKKGGKIAIIVNTVDRAQEFYQQLKENA-----P 247 (358)
T ss_pred ---ec----------------------cccccCHHHHHHHHHH---hhCCCeEEEEECCHHHHHHHHHHHHhhc-----C
Confidence 00 0000000111111111 1246789999999999999999998751 1
Q ss_pred CeEEEEecCCCChHHHHH----HhccCCCCccEEEEecchhhhcCCCCCeEEEEeCCCCcceeecCCCCCCcCCccccCH
Q 002521 559 RVLLLTCHGSMPTSEQKF----IFEKAPPNIRKIVLATNMAEASITINDIVFVVDCGKAKETTYDALNNTPCLLPSWISQ 634 (913)
Q Consensus 559 ~~~v~~lHs~l~~~er~~----v~~~f~~g~~kVLVATniae~GIdIp~v~~VId~g~~k~~~yd~~~~~~~l~~~~iSk 634 (913)
...+..+||++++.+|.. +++.|++|..+|||||+++++||||| +++||+ |+ .+.
T Consensus 248 ~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi~--------~~------------~~~ 306 (358)
T TIGR01587 248 EEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVMIT--------EL------------API 306 (358)
T ss_pred CCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEEEE--------cC------------CCH
Confidence 236899999999999976 48899999999999999999999996 677776 21 144
Q ss_pred hhHHHHhcccCCCC--C---cEEEEecChhh
Q 002521 635 ASARQRRGRAGRVQ--P---GQCYHLYPRCV 660 (913)
Q Consensus 635 a~~~QR~GRAGR~~--~---G~c~~L~t~~~ 660 (913)
.+|+||+||+||.+ . |.+|.++....
T Consensus 307 ~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~~ 337 (358)
T TIGR01587 307 DSLIQRLGRLHRYGRKNGENFEVYIITIAPE 337 (358)
T ss_pred HHHHHHhccccCCCCCCCCCCeEEEEeecCC
Confidence 68999999999973 2 37777776543
No 65
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.96 E-value=7.5e-29 Score=288.88 Aligned_cols=482 Identities=19% Similarity=0.232 Sum_probs=296.4
Q ss_pred HHHHHHHHHH-HcCCeEEEEcCCCchHHhHHHHHHHHHHHHhC-----CCCceEEEEcchhHHHHHHHHHHHHHHhC---
Q 002521 253 KEKERLLQAI-ARNQVIVISGETGCGKTTQLPQYILESEIESG-----RGAFCNIICTQPRRISAMAVSERVSAERG--- 323 (913)
Q Consensus 253 ~~q~~il~~i-~~~~~vII~apTGSGKTt~~~~~ile~~~~~~-----~~~~~~Ilv~qPrr~La~qva~rv~~~~~--- 323 (913)
..|.++.+.. ..+.+.+||||||||||-.+.+.|+..+-+.. ....-+|++++|.++||.++++.+.+.++
T Consensus 113 ~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~kkl~~~g 192 (1230)
T KOG0952|consen 113 RIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFSKKLAPLG 192 (1230)
T ss_pred HHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHhhhccccc
Confidence 3455555554 56889999999999999999999998775411 12346899999999999999999987654
Q ss_pred CCcccEeeeEEeccccCCCCceEEEEecHHHH---HHHhcCC-CCCCceEEEecccc----ccCcchHHHHHHHHHhCc-
Q 002521 324 EPLGETVGYKVRLEGMKGKNTHLLFCTSGILL---RRLLSDH-NLNGVTHVFVDEIH----ERGMNEDFLLIVLKDLLP- 394 (913)
Q Consensus 324 ~~~g~~vGy~v~~e~~~~~~~~Ivv~T~g~Ll---~~l~~~~-~L~~~s~IIIDEaH----er~~~~d~ll~llk~ll~- 394 (913)
..+++..|-.. +....-..++|+|+||+..- |.-..+. .++.+.+|||||+| +||.-.+.+...+.+...
T Consensus 193 i~v~ELTGD~q-l~~tei~~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVHlLhd~RGpvlEtiVaRtlr~ves 271 (1230)
T KOG0952|consen 193 ISVRELTGDTQ-LTKTEIADTQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVHLLHDDRGPVLETIVARTLRLVES 271 (1230)
T ss_pred ceEEEecCcch-hhHHHHHhcCEEEecccceeeeeeeeccchhhhhheeeEEeeeehhhcCcccchHHHHHHHHHHHHHh
Confidence 33333333111 11111256899999997652 2222222 67889999999999 688777766665444433
Q ss_pred cCccceEEEecccc-CHHHHHhhhCCC---CeeccCCccccc--eeeehhhHHhhhcccccccccccchhhhhHHHHhhh
Q 002521 395 RRRDLRLILMSATL-NAELFSNYFGGA---PTIHIPGFTYPV--QAHFLEDVLEMTGYKLTSLNQVDDYGQEKLWKTQRQ 468 (913)
Q Consensus 395 ~~~~~kiIlmSATl-~~~~~~~yf~~~---~~i~i~g~~~pv--~~~yl~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (913)
....+|+|++|||+ |-++++.|++-. .++...++-.|| +..++ |++..
T Consensus 272 sqs~IRivgLSATlPN~eDvA~fL~vn~~~glfsFd~~yRPvpL~~~~i-------G~k~~------------------- 325 (1230)
T KOG0952|consen 272 SQSMIRIVGLSATLPNYEDVARFLRVNPYAGLFSFDQRYRPVPLTQGFI-------GIKGK------------------- 325 (1230)
T ss_pred hhhheEEEEeeccCCCHHHHHHHhcCCCccceeeecccccccceeeeEE-------eeecc-------------------
Confidence 45578999999999 778999999853 344444443333 33332 11110
Q ss_pred hchhhhhhhHHHHHHHHHhhccccccchhhhhhhccccccccchhhHHHHHHHHhhhcCCCcEEEEcCChHHHHHHHHHH
Q 002521 469 LLPRKRKNQITALVEDALHKSNFENYSSRARDSLASWTADCIGFNLIEAVLCHICRKECPGAVLVFMTGWEDISCLRDQL 548 (913)
Q Consensus 469 ~~~~~~~~~i~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~li~~ll~~i~~~~~~g~iLVF~~~~~~i~~l~~~L 548 (913)
......+.+.+. .++ +++..+ ..+..++|||.++.+..+.++.|
T Consensus 326 -----~~~~~~~~~d~~-------------------------~~~---kv~e~~---~~g~qVlvFvhsR~~Ti~tA~~l 369 (1230)
T KOG0952|consen 326 -----KNRQQKKNIDEV-------------------------CYD---KVVEFL---QEGHQVLVFVHSRNETIRTAKKL 369 (1230)
T ss_pred -----cchhhhhhHHHH-------------------------HHH---HHHHHH---HcCCeEEEEEecChHHHHHHHHH
Confidence 000000011100 001 111111 24567999999999999998888
Q ss_pred HcCC--------CCCCC-CC-------eEEEEecCCCChHHHHHHhccCCCCccEEEEecchhhhcCCCCCeEEEEeCCC
Q 002521 549 KSHP--------LLGDP-NR-------VLLLTCHGSMPTSEQKFIFEKAPPNIRKIVLATNMAEASITINDIVFVVDCGK 612 (913)
Q Consensus 549 ~~~~--------~~~~~-~~-------~~v~~lHs~l~~~er~~v~~~f~~g~~kVLVATniae~GIdIp~v~~VId~g~ 612 (913)
.+.. +.... .+ ..+..+|+||..++|..+.+.|..|.++|++||.+++.|+|+|+-.++|- |
T Consensus 370 ~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~~G~i~vL~cTaTLAwGVNLPA~aViIK-G- 447 (1230)
T KOG0952|consen 370 RERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEFKEGHIKVLCCTATLAWGVNLPAYAVIIK-G- 447 (1230)
T ss_pred HHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHHHhcCCceEEEecceeeeccCCcceEEEec-C-
Confidence 6521 11111 12 46788999999999999999999999999999999999999998777763 3
Q ss_pred CcceeecCCCCCCcCCccccCHhhHHHHhcccCCC---CCcEEEEecChh---hHHhhhh---------------CCCCc
Q 002521 613 AKETTYDALNNTPCLLPSWISQASARQRRGRAGRV---QPGQCYHLYPRC---VYEAFAE---------------YQLPE 671 (913)
Q Consensus 613 ~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~---~~G~c~~L~t~~---~~~~l~~---------------~~~pE 671 (913)
...||+..+.-.- .+-....|..|||||. ..|..+.+-+.+ .|..|.. +-..|
T Consensus 448 --T~~ydsskg~f~d----lgilDVlQifGRAGRPqFd~~G~giIiTt~dkl~~Y~sLl~~~~piES~~~~~L~dnLnAE 521 (1230)
T KOG0952|consen 448 --TQVYDSSKGSFVD----LGILDVLQIFGRAGRPQFDSSGEGIIITTRDKLDHYESLLTGQNPIESQLLPCLIDNLNAE 521 (1230)
T ss_pred --CcccccccCceee----ehHHHHHHHHhccCCCCCCCCceEEEEecccHHHHHHHHHcCCChhHHHHHHHHHHhhhhh
Confidence 3448877653222 2556788999999998 467777765543 3444433 33334
Q ss_pred ccccChhhHHHHHhhcCC--------CCHHHHH--HhccCC-Cch-----HHHHHHHHHHHHcCCC--CCCC---Ccccc
Q 002521 672 LLRTPLNSLCLQIKSLQV--------GSIGEFL--SAALQP-PEP-----LAVQNAVDFLKRIGAL--DEKE---NLTNL 730 (913)
Q Consensus 672 i~r~~L~~~~L~lk~l~~--------~~~~~fl--~~~l~p-P~~-----~~i~~al~~L~~~gal--d~~~---~lT~l 730 (913)
|.-..+.++--.+..|+. .++..|= ...+.+ |.. +-+..++..|.....+ |... ..|.+
T Consensus 522 i~LgTVt~VdeAVeWL~yTylYVRm~KNP~~Ygi~~~~l~~dp~l~s~~~~l~~~~~~~L~~~qmi~~D~~t~~~~stdl 601 (1230)
T KOG0952|consen 522 ISLGTVTNVDEAVEWLKYTYLYVRMRKNPMAYGISYEELEPDPRLESHRRELCLVAAMELDKVQMIRFDERTGYLKSTDL 601 (1230)
T ss_pred eeeceeecHHHHHHHhhceeEEEEeccChHHhhhhhhcccCCchHHHHHHHHHHHHHHHhhhhheEEEecccceEcccch
Confidence 433222222111111110 1221110 011111 111 2244455666555333 3332 68999
Q ss_pred cccccccCCChHHHHHHHHhhh-ccChHHHHHHHhhccCCCCCcCChhhHHHHHH------HhcccCCCChhhHHHHHHH
Q 002521 731 GKFLSMLPVDPKLGKMLVMGAI-FRCFDPVLTIVSGLSVRDPFLLPQEKKNLAEI------AKSRFSAKDYSDHMALVRA 803 (913)
Q Consensus 731 G~~ls~lpl~p~~~k~ll~~~~-~~cl~~~l~i~a~ls~~~~f~~p~~~~~~~~~------~~~~~~~~~~sDhl~ll~a 803 (913)
||.++.+.+.-+..+.++.... +--.+++|.|++.-+.=+-.-...++++..+. .+..|.+ ..++--.++++
T Consensus 602 GR~aS~yYik~ETme~~nn~~k~~~se~~iL~lis~aeEfs~ik~R~eE~k~l~el~~~~~~~~~~~~-~~gk~nil~q~ 680 (1230)
T KOG0952|consen 602 GRVASNYYIKYETMETFNNLPKSFYSEDDILALISMAEEFSQIKVREEEKKELKELNEDSCEKYPFGG-EKGKVNILLQA 680 (1230)
T ss_pred hhhhhhhhhhhHHHHHHHhcccccCCHHHHHHHHHhhHhhhhhhhhhhhHHHHHHHHhcccccccccc-cchhHHHHHHh
Confidence 9999999999999999999887 77788888887764432211112222222222 1333443 35677777777
Q ss_pred HHH
Q 002521 804 YEG 806 (913)
Q Consensus 804 f~~ 806 (913)
|..
T Consensus 681 ~Is 683 (1230)
T KOG0952|consen 681 YIS 683 (1230)
T ss_pred hhh
Confidence 654
No 66
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.96 E-value=4e-28 Score=270.41 Aligned_cols=325 Identities=17% Similarity=0.202 Sum_probs=222.4
Q ss_pred hcCCCcHHHHHHHHHHHHcCCeEEEEcCCCchHHhHHHHHHHHHHHHhCC---CCceEEEEcchhHHHHHHHHHHHHHHh
Q 002521 246 RKSLPSFKEKERLLQAIARNQVIVISGETGCGKTTQLPQYILESEIESGR---GAFCNIICTQPRRISAMAVSERVSAER 322 (913)
Q Consensus 246 r~~lP~~~~q~~il~~i~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~---~~~~~Ilv~qPrr~La~qva~rv~~~~ 322 (913)
.+.-|... |..+++.+..+++++.|||||||||+++.++++..+....+ ....+.+++.|+|+||.|++..+.+..
T Consensus 155 ~F~~Pt~i-q~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~~~~gl~a~Il~ptreLa~Qi~re~~k~~ 233 (593)
T KOG0344|consen 155 GFDEPTPI-QKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQEKHKVGLRALILSPTRELAAQIYREMRKYS 233 (593)
T ss_pred CCCCCCcc-cchhhhhhhcccceEEeccCCCcchhhhhhHHHHHHHHhhcccCccceEEEEecchHHHHHHHHHHHHhcC
Confidence 34444433 55788899999999999999999999999999988865432 233466777799999999998887643
Q ss_pred C--CCcccEeeeEEe------ccccCCCCceEEEEecHHHHHHHhcCC---CCCCceEEEeccccccCcchHHHHHHHHH
Q 002521 323 G--EPLGETVGYKVR------LEGMKGKNTHLLFCTSGILLRRLLSDH---NLNGVTHVFVDEIHERGMNEDFLLIVLKD 391 (913)
Q Consensus 323 ~--~~~g~~vGy~v~------~e~~~~~~~~Ivv~T~g~Ll~~l~~~~---~L~~~s~IIIDEaHer~~~~d~ll~llk~ 391 (913)
- ..-....+.... ..-......+|++.||-.+...+...+ .+.++.++|+||++ +-+....+...+..
T Consensus 234 ~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~~~idl~~V~~lV~dEaD-~lfe~~~f~~Qla~ 312 (593)
T KOG0344|consen 234 IDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGKLNIDLSKVEWLVVDEAD-LLFEPEFFVEQLAD 312 (593)
T ss_pred CCCCCchhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCCccchhheeeeEeechHH-hhhChhhHHHHHHH
Confidence 1 111111111110 011112357999999999999987765 78999999999999 43333333333333
Q ss_pred hCc--cCccceEEEeccccCHH--HHHhhhCCCCeeccCCccccceeeehhhHHhhhcccccccccccchhhhhHHHHhh
Q 002521 392 LLP--RRRDLRLILMSATLNAE--LFSNYFGGAPTIHIPGFTYPVQAHFLEDVLEMTGYKLTSLNQVDDYGQEKLWKTQR 467 (913)
Q Consensus 392 ll~--~~~~~kiIlmSATl~~~--~~~~yf~~~~~i~i~g~~~pv~~~yl~di~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (913)
++. ..+++++=++|||++.. .++......++..+-|..
T Consensus 313 I~sac~s~~i~~a~FSat~~~~VEE~~~~i~~~~~~vivg~~-------------------------------------- 354 (593)
T KOG0344|consen 313 IYSACQSPDIRVALFSATISVYVEEWAELIKSDLKRVIVGLR-------------------------------------- 354 (593)
T ss_pred HHHHhcCcchhhhhhhccccHHHHHHHHHhhccceeEEEecc--------------------------------------
Confidence 333 34788899999998643 332222111111110100
Q ss_pred hhchhhhhhhHHHHHHHHHhhccccccchhhhhhhccccccccchhhHHHHHHHHhhhcCCCcEEEEcCChHHHHHHHHH
Q 002521 468 QLLPRKRKNQITALVEDALHKSNFENYSSRARDSLASWTADCIGFNLIEAVLCHICRKECPGAVLVFMTGWEDISCLRDQ 547 (913)
Q Consensus 468 ~~~~~~~~~~i~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~li~~ll~~i~~~~~~g~iLVF~~~~~~i~~l~~~ 547 (913)
+.....+++-+- |.. .-..+...+..+....-..++|||+.+.+.+..|...
T Consensus 355 --------~sa~~~V~Qelv---F~g-----------------se~~K~lA~rq~v~~g~~PP~lIfVQs~eRak~L~~~ 406 (593)
T KOG0344|consen 355 --------NSANETVDQELV---FCG-----------------SEKGKLLALRQLVASGFKPPVLIFVQSKERAKQLFEE 406 (593)
T ss_pred --------hhHhhhhhhhhe---eee-----------------cchhHHHHHHHHHhccCCCCeEEEEecHHHHHHHHHH
Confidence 000111111111 000 0011111233444444567899999999999999999
Q ss_pred HHcCCCCCCCCCeEEEEecCCCChHHHHHHhccCCCCccEEEEecchhhhcCCCCCeEEEEeCCCCcceeecCCCCCCcC
Q 002521 548 LKSHPLLGDPNRVLLLTCHGSMPTSEQKFIFEKAPPNIRKIVLATNMAEASITINDIVFVVDCGKAKETTYDALNNTPCL 627 (913)
Q Consensus 548 L~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~g~~kVLVATniae~GIdIp~v~~VId~g~~k~~~yd~~~~~~~l 627 (913)
|... .++.|..+||..++.+|..+++.|+.|++.|++||+++++|||+-+|+.||++++|.
T Consensus 407 L~~~------~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLicTdll~RGiDf~gvn~VInyD~p~------------- 467 (593)
T KOG0344|consen 407 LEIY------DNINVDVIHGERSQKQRDETMERFRIGKIWVLICTDLLARGIDFKGVNLVINYDFPQ------------- 467 (593)
T ss_pred hhhc------cCcceeeEecccchhHHHHHHHHHhccCeeEEEehhhhhccccccCcceEEecCCCc-------------
Confidence 9632 377899999999999999999999999999999999999999999999999977666
Q ss_pred CccccCHhhHHHHhcccCCC-CCcEEEEecChhhHH
Q 002521 628 LPSWISQASARQRRGRAGRV-QPGQCYHLYPRCVYE 662 (913)
Q Consensus 628 ~~~~iSka~~~QR~GRAGR~-~~G~c~~L~t~~~~~ 662 (913)
|..+|+||+||+||. +.|++|.+|+..+..
T Consensus 468 -----s~~syihrIGRtgRag~~g~Aitfytd~d~~ 498 (593)
T KOG0344|consen 468 -----SDLSYIHRIGRTGRAGRSGKAITFYTDQDMP 498 (593)
T ss_pred -----hhHHHHHHhhccCCCCCCcceEEEeccccch
Confidence 666999999999999 789999999985543
No 67
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.96 E-value=1.6e-27 Score=280.10 Aligned_cols=318 Identities=14% Similarity=0.071 Sum_probs=197.7
Q ss_pred CCcHHHHHHHHHHHHcCCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHHHHHhCCCccc
Q 002521 249 LPSFKEKERLLQAIARNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVSAERGEPLGE 328 (913)
Q Consensus 249 lP~~~~q~~il~~i~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv~~~~~~~~g~ 328 (913)
.....+|.+++..+..++..++++|||+|||.++...+ ...+... .++++|++||++|+.|+.+++.+........
T Consensus 113 ~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~-~~~~~~~---~~~vLilvpt~eL~~Q~~~~l~~~~~~~~~~ 188 (501)
T PHA02558 113 IEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLS-RYYLENY---EGKVLIIVPTTSLVTQMIDDFVDYRLFPREA 188 (501)
T ss_pred CCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHH-HHHHhcC---CCeEEEEECcHHHHHHHHHHHHHhccccccc
Confidence 45667888888888888889999999999998776433 3223222 2256666699999999999998754322111
Q ss_pred EeeeEEeccccCCCCceEEEEecHHHHHHHhcCCCCCCceEEEeccccccCcchHHHHHHHHHhCccCccceEEEecccc
Q 002521 329 TVGYKVRLEGMKGKNTHLLFCTSGILLRRLLSDHNLNGVTHVFVDEIHERGMNEDFLLIVLKDLLPRRRDLRLILMSATL 408 (913)
Q Consensus 329 ~vGy~v~~e~~~~~~~~Ivv~T~g~Ll~~l~~~~~L~~~s~IIIDEaHer~~~~d~ll~llk~ll~~~~~~kiIlmSATl 408 (913)
..+.. .......+.+|+|+|++.+.+... ..+.++++|||||||+... ..+ ..+++.+ .+..++++||||+
T Consensus 189 ~~~i~--~g~~~~~~~~I~VaT~qsl~~~~~--~~~~~~~~iIvDEaH~~~~-~~~-~~il~~~---~~~~~~lGLTATp 259 (501)
T PHA02558 189 MHKIY--SGTAKDTDAPIVVSTWQSAVKQPK--EWFDQFGMVIVDECHLFTG-KSL-TSIITKL---DNCKFKFGLTGSL 259 (501)
T ss_pred eeEEe--cCcccCCCCCEEEeeHHHHhhchh--hhccccCEEEEEchhcccc-hhH-HHHHHhh---hccceEEEEeccC
Confidence 11111 111222457899999999986542 2578999999999996532 222 2222222 1234689999999
Q ss_pred CHHH-----HHhhhCCCCeeccC-------CccccceeeehhhHHhhhcccccccccccchhhhhHHHHhhhhchhhhhh
Q 002521 409 NAEL-----FSNYFGGAPTIHIP-------GFTYPVQAHFLEDVLEMTGYKLTSLNQVDDYGQEKLWKTQRQLLPRKRKN 476 (913)
Q Consensus 409 ~~~~-----~~~yf~~~~~i~i~-------g~~~pv~~~yl~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (913)
.... +..+||+. ...+. |...+++..... ..+........ ...
T Consensus 260 ~~~~~~~~~~~~~fG~i-~~~v~~~~li~~g~l~~~~~~~v~----------------~~~~~~~~~~~--------~~~ 314 (501)
T PHA02558 260 RDGKANILQYVGLFGDI-FKPVTTSQLMEEGQVTDLKINSIF----------------LRYPDEDRVKL--------KGE 314 (501)
T ss_pred CCccccHHHHHHhhCCc-eEEecHHHHHhCCCcCCceEEEEe----------------ccCCHHHhhhh--------ccc
Confidence 4321 23345421 11110 111111110000 00000000000 000
Q ss_pred hHHHHHHHHHhhccccccchhhhhhhccccccccchhhHHHHHHHHhhhcCCCcEEEEcCChHHHHHHHHHHHcCCCCCC
Q 002521 477 QITALVEDALHKSNFENYSSRARDSLASWTADCIGFNLIEAVLCHICRKECPGAVLVFMTGWEDISCLRDQLKSHPLLGD 556 (913)
Q Consensus 477 ~i~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~li~~ll~~i~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~~~ 556 (913)
.....+..... ......++..++..+. ..++++|||+...++++.+++.|...
T Consensus 315 ~~~~~~~~l~~--------------------~~~Rn~~I~~~~~~~~--~~~~~~lV~~~~~~h~~~L~~~L~~~----- 367 (501)
T PHA02558 315 DYQEEIKYITS--------------------HTKRNKWIANLALKLA--KKGENTFVMFKYVEHGKPLYEMLKKV----- 367 (501)
T ss_pred chHHHHHHHhc--------------------cHHHHHHHHHHHHHHH--hcCCCEEEEEEEHHHHHHHHHHHHHc-----
Confidence 00000000000 0001122223333332 24567999999999999999999985
Q ss_pred CCCeEEEEecCCCChHHHHHHhccCCCCccEEEEec-chhhhcCCCCCeEEEEeCCCCcceeecCCCCCCcCCccccCHh
Q 002521 557 PNRVLLLTCHGSMPTSEQKFIFEKAPPNIRKIVLAT-NMAEASITINDIVFVVDCGKAKETTYDALNNTPCLLPSWISQA 635 (913)
Q Consensus 557 ~~~~~v~~lHs~l~~~er~~v~~~f~~g~~kVLVAT-niae~GIdIp~v~~VId~g~~k~~~yd~~~~~~~l~~~~iSka 635 (913)
+..+..+||+|+.++|..+++.|++|...||||| +++++|+|+|++++||....++ |+.
T Consensus 368 --g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~Dip~ld~vIl~~p~~------------------s~~ 427 (501)
T PHA02558 368 --YDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGISIKNLHHVIFAHPSK------------------SKI 427 (501)
T ss_pred --CCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceeccccccccccEEEEecCCc------------------chh
Confidence 6679999999999999999999999999999998 8999999999999999855554 667
Q ss_pred hHHHHhcccCCCCCcE
Q 002521 636 SARQRRGRAGRVQPGQ 651 (913)
Q Consensus 636 ~~~QR~GRAGR~~~G~ 651 (913)
.|.||+||+||..+|+
T Consensus 428 ~~~QriGR~~R~~~~K 443 (501)
T PHA02558 428 IVLQSIGRVLRKHGSK 443 (501)
T ss_pred hhhhhhhccccCCCCC
Confidence 8899999999996664
No 68
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.96 E-value=1.2e-27 Score=274.79 Aligned_cols=298 Identities=18% Similarity=0.202 Sum_probs=208.8
Q ss_pred HHHHHHHHHcCCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHHHHHhCCCcccEeeeEE
Q 002521 255 KERLLQAIARNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVSAERGEPLGETVGYKV 334 (913)
Q Consensus 255 q~~il~~i~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv~~~~~~~~g~~vGy~v 334 (913)
|+++++++.+++++++..|||.|||.++-+|.+-. . +..||+.|..+|-....+.+.. .|..+.+--
T Consensus 22 Q~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~-----~---G~TLVVSPLiSLM~DQV~~l~~-----~Gi~A~~ln 88 (590)
T COG0514 22 QQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL-----E---GLTLVVSPLISLMKDQVDQLEA-----AGIRAAYLN 88 (590)
T ss_pred HHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhc-----C---CCEEEECchHHHHHHHHHHHHH-----cCceeehhh
Confidence 89999999999999999999999998887776531 2 2566777999998777777644 232222111
Q ss_pred e----------ccccCCCCceEEEEecHHHHHHHhcCC-CCCCceEEEecccccc-----CcchHHHHHHHHHhCccCcc
Q 002521 335 R----------LEGMKGKNTHLLFCTSGILLRRLLSDH-NLNGVTHVFVDEIHER-----GMNEDFLLIVLKDLLPRRRD 398 (913)
Q Consensus 335 ~----------~e~~~~~~~~Ivv~T~g~Ll~~l~~~~-~L~~~s~IIIDEaHer-----~~~~d~ll~llk~ll~~~~~ 398 (913)
. .........+|+|.+|++|..--..+. .-..+++++|||||+- ++..++.. +..+....|+
T Consensus 89 S~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y~~--lg~l~~~~~~ 166 (590)
T COG0514 89 STLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDFRPDYRR--LGRLRAGLPN 166 (590)
T ss_pred cccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCccCHhHHH--HHHHHhhCCC
Confidence 0 112233457999999998864221111 2456899999999963 34455432 2345555668
Q ss_pred ceEEEeccccCHH---HHHhhhC-CCCeeccCCccccceeeehhhHHhhhcccccccccccchhhhhHHHHhhhhchhhh
Q 002521 399 LRLILMSATLNAE---LFSNYFG-GAPTIHIPGFTYPVQAHFLEDVLEMTGYKLTSLNQVDDYGQEKLWKTQRQLLPRKR 474 (913)
Q Consensus 399 ~kiIlmSATl~~~---~~~~yf~-~~~~i~i~g~~~pv~~~yl~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (913)
+.++.+|||.+.. ++.+.++ +.+.+.+.+...|. ++|
T Consensus 167 ~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~sfdRpN-i~~-------------------------------------- 207 (590)
T COG0514 167 PPVLALTATATPRVRDDIREQLGLQDANIFRGSFDRPN-LAL-------------------------------------- 207 (590)
T ss_pred CCEEEEeCCCChHHHHHHHHHhcCCCcceEEecCCCch-hhh--------------------------------------
Confidence 8999999999765 3333332 22222222211110 000
Q ss_pred hhhHHHHHHHHHhhccccccchhhhhhhccccccccchhhHHHHHHHHhhhcCCCcEEEEcCChHHHHHHHHHHHcCCCC
Q 002521 475 KNQITALVEDALHKSNFENYSSRARDSLASWTADCIGFNLIEAVLCHICRKECPGAVLVFMTGWEDISCLRDQLKSHPLL 554 (913)
Q Consensus 475 ~~~i~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~li~~ll~~i~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~ 554 (913)
. +..... ..+... .+.. ......++.||||.|++.++.+++.|...
T Consensus 208 -----~-v~~~~~-----------------------~~~q~~-fi~~-~~~~~~~~GIIYc~sRk~~E~ia~~L~~~--- 253 (590)
T COG0514 208 -----K-VVEKGE-----------------------PSDQLA-FLAT-VLPQLSKSGIIYCLTRKKVEELAEWLRKN--- 253 (590)
T ss_pred -----h-hhhccc-----------------------HHHHHH-HHHh-hccccCCCeEEEEeeHHhHHHHHHHHHHC---
Confidence 0 000000 000000 1111 11345677999999999999999999986
Q ss_pred CCCCCeEEEEecCCCChHHHHHHhccCCCCccEEEEecchhhhcCCCCCeEEEEeCCCCcceeecCCCCCCcCCccccCH
Q 002521 555 GDPNRVLLLTCHGSMPTSEQKFIFEKAPPNIRKIVLATNMAEASITINDIVFVVDCGKAKETTYDALNNTPCLLPSWISQ 634 (913)
Q Consensus 555 ~~~~~~~v~~lHs~l~~~er~~v~~~f~~g~~kVLVATniae~GIdIp~v~~VId~g~~k~~~yd~~~~~~~l~~~~iSk 634 (913)
++.+..+||||+.++|..+.+.|.++..+|+|||+.+.+|||.|||++||++++|+ |.
T Consensus 254 ----g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH~~lP~------------------s~ 311 (590)
T COG0514 254 ----GISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIHYDLPG------------------SI 311 (590)
T ss_pred ----CCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEEecCCC------------------CH
Confidence 88999999999999999999999999999999999999999999999999977777 77
Q ss_pred hhHHHHhcccCCC-CCcEEEEecChhhHH
Q 002521 635 ASARQRRGRAGRV-QPGQCYHLYPRCVYE 662 (913)
Q Consensus 635 a~~~QR~GRAGR~-~~G~c~~L~t~~~~~ 662 (913)
++|.|-+|||||. .+..|+.||+..+..
T Consensus 312 EsYyQE~GRAGRDG~~a~aill~~~~D~~ 340 (590)
T COG0514 312 ESYYQETGRAGRDGLPAEAILLYSPEDIR 340 (590)
T ss_pred HHHHHHHhhccCCCCcceEEEeeccccHH
Confidence 7999999999999 799999999987754
No 69
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=3.9e-28 Score=258.44 Aligned_cols=327 Identities=18% Similarity=0.294 Sum_probs=231.0
Q ss_pred hhhhHHhhhcCCCcHHHHHHHHHHHHcCCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHH
Q 002521 238 EGNKMLDFRKSLPSFKEKERLLQAIARNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSER 317 (913)
Q Consensus 238 ~~~~l~~~r~~lP~~~~q~~il~~i~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~r 317 (913)
....+..+.+.-|...||.+|++.+ ++.++++.+.+|+|||.++...+++.+-. ....+.++++.|+|+||.|+.+.
T Consensus 37 LLrgiy~yGFekPSaIQqraI~p~i-~G~dv~~qaqsgTgKt~af~i~iLq~iD~--~~ke~qalilaPtreLa~qi~~v 113 (397)
T KOG0327|consen 37 LLRGIYAYGFEKPSAIQQRAILPCI-KGHDVIAQAQSGTGKTAAFLISILQQIDM--SVKETQALILAPTRELAQQIQKV 113 (397)
T ss_pred HHhHHHhhccCCchHHHhccccccc-cCCceeEeeeccccchhhhHHHHHhhcCc--chHHHHHHHhcchHHHHHHHHHH
Confidence 4566778889999999999999888 77899999999999999998888876522 23345677777999999999855
Q ss_pred HHHHhCCCcc----cEeeeEEe---ccccCCCCceEEEEecHHHHHHHhcCC-CCCCceEEEeccccccCcchHHHHHHH
Q 002521 318 VSAERGEPLG----ETVGYKVR---LEGMKGKNTHLLFCTSGILLRRLLSDH-NLNGVTHVFVDEIHERGMNEDFLLIVL 389 (913)
Q Consensus 318 v~~~~~~~~g----~~vGy~v~---~e~~~~~~~~Ivv~T~g~Ll~~l~~~~-~L~~~s~IIIDEaHer~~~~d~ll~ll 389 (913)
+.. .|...+ ..+|.... ........++|+++|||.++.++.... ....+.++|+||++|+ +..++...+.
T Consensus 114 ~~~-lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDEaDEm-Ls~gfkdqI~ 191 (397)
T KOG0327|consen 114 VRA-LGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDEADEM-LSRGFKDQIY 191 (397)
T ss_pred HHh-hhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccccccccceeEEeecchHhh-hccchHHHHH
Confidence 543 333222 22332211 112233457999999999999997665 5667999999999975 2222222222
Q ss_pred HHhCccCccceEEEeccccCHHHH--Hhhh-CCCCeeccCCccccceeeehhhHHhhhcccccccccccchhhhhHHHHh
Q 002521 390 KDLLPRRRDLRLILMSATLNAELF--SNYF-GGAPTIHIPGFTYPVQAHFLEDVLEMTGYKLTSLNQVDDYGQEKLWKTQ 466 (913)
Q Consensus 390 k~ll~~~~~~kiIlmSATl~~~~~--~~yf-~~~~~i~i~g~~~pv~~~yl~di~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (913)
...-...++.|++++|||++.+.+ .+-| ..+-.+.+.. +-+...| +
T Consensus 192 ~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk-----------~~ltl~g--------------------i 240 (397)
T KOG0327|consen 192 DIFQELPSDVQVVLLSATMPSDVLEVTKKFMREPVRILVKK-----------DELTLEG--------------------I 240 (397)
T ss_pred HHHHHcCcchhheeecccCcHHHHHHHHHhccCceEEEecc-----------hhhhhhh--------------------e
Confidence 222334567899999999987633 2323 2221121110 0000000 0
Q ss_pred hhhchhhhhhhHHHHHHHHHhhccccccchhhhhhhccccccccchhhHHHHHHHHhhhcCCCcEEEEcCChHHHHHHHH
Q 002521 467 RQLLPRKRKNQITALVEDALHKSNFENYSSRARDSLASWTADCIGFNLIEAVLCHICRKECPGAVLVFMTGWEDISCLRD 546 (913)
Q Consensus 467 ~~~~~~~~~~~i~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~li~~ll~~i~~~~~~g~iLVF~~~~~~i~~l~~ 546 (913)
++.. .....+.+...++.++. .-...+|||+|+..+..+..
T Consensus 241 kq~~-------------------------------------i~v~k~~k~~~l~dl~~--~~~q~~if~nt~r~v~~l~~ 281 (397)
T KOG0327|consen 241 KQFY-------------------------------------INVEKEEKLDTLCDLYR--RVTQAVIFCNTRRKVDNLTD 281 (397)
T ss_pred eeee-------------------------------------eeccccccccHHHHHHH--hhhcceEEecchhhHHHHHH
Confidence 0000 00000002234555555 44668999999999999999
Q ss_pred HHHcCCCCCCCCCeEEEEecCCCChHHHHHHhccCCCCccEEEEecchhhhcCCCCCeEEEEeCCCCcceeecCCCCCCc
Q 002521 547 QLKSHPLLGDPNRVLLLTCHGSMPTSEQKFIFEKAPPNIRKIVLATNMAEASITINDIVFVVDCGKAKETTYDALNNTPC 626 (913)
Q Consensus 547 ~L~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~g~~kVLVATniae~GIdIp~v~~VId~g~~k~~~yd~~~~~~~ 626 (913)
.|..+ ++.+..+||.|.+.+|..++..|+.|..+|||.|+.+++|+|+-.+..||++.+|.
T Consensus 282 ~L~~~-------~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~slvinydlP~------------ 342 (397)
T KOG0327|consen 282 KLRAH-------GFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVSLVVNYDLPA------------ 342 (397)
T ss_pred HHhhC-------CceEEEeecccchhhhhHHHHHhhcCCceEEeeccccccccchhhcceeeeecccc------------
Confidence 99776 78899999999999999999999999999999999999999999999999955543
Q ss_pred CCccccCHhhHHHHhcccCCC-CCcEEEEecChhhHHhh
Q 002521 627 LLPSWISQASARQRRGRAGRV-QPGQCYHLYPRCVYEAF 664 (913)
Q Consensus 627 l~~~~iSka~~~QR~GRAGR~-~~G~c~~L~t~~~~~~l 664 (913)
-+.+|.||+||+||. ++|..+.+.++.+-..+
T Consensus 343 ------~~~~yihR~gr~gr~grkg~~in~v~~~d~~~l 375 (397)
T KOG0327|consen 343 ------RKENYIHRIGRAGRFGRKGVAINFVTEEDVRDL 375 (397)
T ss_pred ------chhhhhhhcccccccCCCceeeeeehHhhHHHH
Confidence 445888999999999 89999999998765543
No 70
>KOG4284 consensus DEAD box protein [Transcription]
Probab=99.95 E-value=2.6e-28 Score=270.79 Aligned_cols=321 Identities=18% Similarity=0.232 Sum_probs=233.7
Q ss_pred cCCCcHHHHHHHHHHHHcCCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHHHHHh----
Q 002521 247 KSLPSFKEKERLLQAIARNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVSAER---- 322 (913)
Q Consensus 247 ~~lP~~~~q~~il~~i~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv~~~~---- 322 (913)
+.+|. +.|.++++++..+-++||.+..|+|||+++..+.++.+..+.. ...+++++|||++|.|+.+.|.+..
T Consensus 45 f~~pt-kiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~~~~--~~q~~Iv~PTREiaVQI~~tv~~v~~sf~ 121 (980)
T KOG4284|consen 45 FALPT-KIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDSRSS--HIQKVIVTPTREIAVQIKETVRKVAPSFT 121 (980)
T ss_pred ccCCC-chhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCcccC--cceeEEEecchhhhhHHHHHHHHhccccc
Confidence 44554 4588899999999999999999999999998888887744333 3344445599999999999987643
Q ss_pred CCCcccEeeeE-EeccccCCCCceEEEEecHHHHHHHhcCC-CCCCceEEEeccccccCcchHHHHHHHHHhCc-cCccc
Q 002521 323 GEPLGETVGYK-VRLEGMKGKNTHLLFCTSGILLRRLLSDH-NLNGVTHVFVDEIHERGMNEDFLLIVLKDLLP-RRRDL 399 (913)
Q Consensus 323 ~~~~g~~vGy~-v~~e~~~~~~~~Ivv~T~g~Ll~~l~~~~-~L~~~s~IIIDEaHer~~~~d~ll~llk~ll~-~~~~~ 399 (913)
|..+...+|-. +..+...-..++|+|+|||+++.++..+. ..+.++++|+|||+.. +.+..+..-+..++. .....
T Consensus 122 g~~csvfIGGT~~~~d~~rlk~~rIvIGtPGRi~qL~el~~~n~s~vrlfVLDEADkL-~~t~sfq~~In~ii~slP~~r 200 (980)
T KOG4284|consen 122 GARCSVFIGGTAHKLDLIRLKQTRIVIGTPGRIAQLVELGAMNMSHVRLFVLDEADKL-MDTESFQDDINIIINSLPQIR 200 (980)
T ss_pred CcceEEEecCchhhhhhhhhhhceEEecCchHHHHHHHhcCCCccceeEEEeccHHhh-hchhhHHHHHHHHHHhcchhh
Confidence 33333344422 22333344678999999999999987765 8899999999999943 232222222222222 22344
Q ss_pred eEEEeccccCH---HHHHhhhCCCCeeccCCcc---ccceeeehhhHHhhhcccccccccccchhhhhHHHHhhhhchhh
Q 002521 400 RLILMSATLNA---ELFSNYFGGAPTIHIPGFT---YPVQAHFLEDVLEMTGYKLTSLNQVDDYGQEKLWKTQRQLLPRK 473 (913)
Q Consensus 400 kiIlmSATl~~---~~~~~yf~~~~~i~i~g~~---~pv~~~yl~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (913)
|++.+|||.+. +.+++|+.++..+....+. +-+..+|... ..+
T Consensus 201 Qv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d~~L~GikQyv~~~---------~s~---------------------- 249 (980)
T KOG4284|consen 201 QVAAFSATYPRNLDNLLSKFMRDPALVRFNADDVQLFGIKQYVVAK---------CSP---------------------- 249 (980)
T ss_pred eeeEEeccCchhHHHHHHHHhcccceeecccCCceeechhheeeec---------cCC----------------------
Confidence 89999999975 4788899887777665432 2222222110 000
Q ss_pred hhhhHHHHHHHHHhhccccccchhhhhhhccccccccchhhHHHHHHHHhhhcCCCcEEEEcCChHHHHHHHHHHHcCCC
Q 002521 474 RKNQITALVEDALHKSNFENYSSRARDSLASWTADCIGFNLIEAVLCHICRKECPGAVLVFMTGWEDISCLRDQLKSHPL 553 (913)
Q Consensus 474 ~~~~i~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~li~~ll~~i~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~ 553 (913)
+...-.+.++...|.++++.-+-...||||+....++.++..|...
T Consensus 250 --------------------------------nnsveemrlklq~L~~vf~~ipy~QAlVF~~~~sra~~~a~~L~ss-- 295 (980)
T KOG4284|consen 250 --------------------------------NNSVEEMRLKLQKLTHVFKSIPYVQALVFCDQISRAEPIATHLKSS-- 295 (980)
T ss_pred --------------------------------cchHHHHHHHHHHHHHHHhhCchHHHHhhhhhhhhhhHHHHHhhcc--
Confidence 0000012234455677777777778999999999999999999986
Q ss_pred CCCCCCeEEEEecCCCChHHHHHHhccCCCCccEEEEecchhhhcCCCCCeEEEEeCCCCcceeecCCCCCCcCCccccC
Q 002521 554 LGDPNRVLLLTCHGSMPTSEQKFIFEKAPPNIRKIVLATNMAEASITINDIVFVVDCGKAKETTYDALNNTPCLLPSWIS 633 (913)
Q Consensus 554 ~~~~~~~~v~~lHs~l~~~er~~v~~~f~~g~~kVLVATniae~GIdIp~v~~VId~g~~k~~~yd~~~~~~~l~~~~iS 633 (913)
|+.+.++.|.|++.+|..+++..+.-.++|||+||..++|||-|+|++|||.+.|- .
T Consensus 296 -----G~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsTDLtaRGIDa~~vNLVVNiD~p~------------------d 352 (980)
T KOG4284|consen 296 -----GLDVTFISGAMSQKDRLLAVDQLRAFRVRILVSTDLTARGIDADNVNLVVNIDAPA------------------D 352 (980)
T ss_pred -----CCCeEEeccccchhHHHHHHHHhhhceEEEEEecchhhccCCccccceEEecCCCc------------------c
Confidence 88899999999999999999999999999999999999999999999999955543 3
Q ss_pred HhhHHHHhcccCCC-CCcEEEEecChh
Q 002521 634 QASARQRRGRAGRV-QPGQCYHLYPRC 659 (913)
Q Consensus 634 ka~~~QR~GRAGR~-~~G~c~~L~t~~ 659 (913)
-..|.||+|||||. ..|.++.++...
T Consensus 353 ~eTY~HRIGRAgRFG~~G~aVT~~~~~ 379 (980)
T KOG4284|consen 353 EETYFHRIGRAGRFGAHGAAVTLLEDE 379 (980)
T ss_pred hHHHHHHhhhcccccccceeEEEeccc
Confidence 34778999999999 679888886543
No 71
>PRK13766 Hef nuclease; Provisional
Probab=99.95 E-value=1.4e-26 Score=287.16 Aligned_cols=382 Identities=15% Similarity=0.169 Sum_probs=220.6
Q ss_pred cCCCcHHHHHHHHHHHHcCCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHHHHHhCCCc
Q 002521 247 KSLPSFKEKERLLQAIARNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVSAERGEPL 326 (913)
Q Consensus 247 ~~lP~~~~q~~il~~i~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv~~~~~~~~ 326 (913)
..+....||.++...+..+ +++|++|||+|||.++.+++...+. .. ..+++++.|+++|+.|+++.+...++...
T Consensus 12 ~~~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~--~~--~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~ 86 (773)
T PRK13766 12 NTIEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLH--KK--GGKVLILAPTKPLVEQHAEFFRKFLNIPE 86 (773)
T ss_pred CcCCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHH--hC--CCeEEEEeCcHHHHHHHHHHHHHHhCCCC
Confidence 3456678899988887776 7899999999999988887776552 22 23666777999999999999988766531
Q ss_pred ccEeeeEEeccc----cCCCCceEEEEecHHHHHHHhcCC-CCCCceEEEeccccccCcchHHHHHHHHHhCccCccceE
Q 002521 327 GETVGYKVRLEG----MKGKNTHLLFCTSGILLRRLLSDH-NLNGVTHVFVDEIHERGMNEDFLLIVLKDLLPRRRDLRL 401 (913)
Q Consensus 327 g~~vGy~v~~e~----~~~~~~~Ivv~T~g~Ll~~l~~~~-~L~~~s~IIIDEaHer~~~~d~ll~llk~ll~~~~~~ki 401 (913)
...+.+...... ....+.+|+|+||+++...+.... .+.++++|||||||+..-... ...+.+......+...+
T Consensus 87 ~~v~~~~g~~~~~~r~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~~~~~-~~~i~~~~~~~~~~~~i 165 (773)
T PRK13766 87 EKIVVFTGEVSPEKRAELWEKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHRAVGNYA-YVYIAERYHEDAKNPLV 165 (773)
T ss_pred ceEEEEeCCCCHHHHHHHHhCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCcccccccc-HHHHHHHHHhcCCCCEE
Confidence 111222111100 011346899999999988776554 688999999999995422211 11223333344445679
Q ss_pred EEeccccC--HHHHHhhhCC--CCeeccCCc--------cccceeeeh----hh----H-------Hh-------hhccc
Q 002521 402 ILMSATLN--AELFSNYFGG--APTIHIPGF--------TYPVQAHFL----ED----V-------LE-------MTGYK 447 (913)
Q Consensus 402 IlmSATl~--~~~~~~yf~~--~~~i~i~g~--------~~pv~~~yl----~d----i-------~~-------~~~~~ 447 (913)
++||||+. .+.+.....+ ...+.+... ..+.+..++ .+ + +. ..+..
T Consensus 166 l~lTaTP~~~~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~l~~l~~~~~~ 245 (773)
T PRK13766 166 LGLTASPGSDEEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKDRLKKLKELGVI 245 (773)
T ss_pred EEEEcCCCCCHHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHCCCc
Confidence 99999983 2333332221 111111110 111111110 00 0 00 00100
Q ss_pred cccccccc--chhhhhHHHHhhhhchh-h----hh---------------------hhHHHHHHHHHhhccccccchh--
Q 002521 448 LTSLNQVD--DYGQEKLWKTQRQLLPR-K----RK---------------------NQITALVEDALHKSNFENYSSR-- 497 (913)
Q Consensus 448 ~~~~~~~~--~~~~~~~~~~~~~~~~~-~----~~---------------------~~i~~~v~~~l~~~~~~~~~~~-- 497 (913)
.......+ ++.... .......... . .. .....+++..............
T Consensus 246 ~~~~~~~~~~~l~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~~~~~~~~~~ 324 (773)
T PRK13766 246 VSISPDVSKKELLGLQ-KKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEARSSGGSKASK 324 (773)
T ss_pred ccCCCCcCHHHHHHHH-HHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhccccCCcHHHH
Confidence 00000000 000000 0000000000 0 00 0000001000000000000000
Q ss_pred ----------hhhhhccccccccchhhHHHHHHHHhhhcCCCcEEEEcCChHHHHHHHHHHHcCCCCCCCCCeEEEEecC
Q 002521 498 ----------ARDSLASWTADCIGFNLIEAVLCHICRKECPGAVLVFMTGWEDISCLRDQLKSHPLLGDPNRVLLLTCHG 567 (913)
Q Consensus 498 ----------~~~~l~~~~~~~~~~~li~~ll~~i~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lHs 567 (913)
....+..........+.+..++..+.....++++||||+++..++.+.+.|... ++.+..+||
T Consensus 325 ~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~-------~~~~~~~~g 397 (773)
T PRK13766 325 RLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKE-------GIKAVRFVG 397 (773)
T ss_pred HHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhC-------CCceEEEEc
Confidence 000000111111223444555555555567889999999999999999999764 455666776
Q ss_pred C--------CChHHHHHHhccCCCCccEEEEecchhhhcCCCCCeEEEEeCCCCcceeecCCCCCCcCCccccCHhhHHH
Q 002521 568 S--------MPTSEQKFIFEKAPPNIRKIVLATNMAEASITINDIVFVVDCGKAKETTYDALNNTPCLLPSWISQASARQ 639 (913)
Q Consensus 568 ~--------l~~~er~~v~~~f~~g~~kVLVATniae~GIdIp~v~~VId~g~~k~~~yd~~~~~~~l~~~~iSka~~~Q 639 (913)
. |++.+|..+++.|++|..+|||||+++++|+|+|++++||+ ||+.. +...++|
T Consensus 398 ~~~~~~~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~--------yd~~~----------s~~r~iQ 459 (773)
T PRK13766 398 QASKDGDKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIF--------YEPVP----------SEIRSIQ 459 (773)
T ss_pred cccccccCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEE--------eCCCC----------CHHHHHH
Confidence 5 99999999999999999999999999999999999999999 55432 5557889
Q ss_pred HhcccCCCCCcEEEEecChhh
Q 002521 640 RRGRAGRVQPGQCYHLYPRCV 660 (913)
Q Consensus 640 R~GRAGR~~~G~c~~L~t~~~ 660 (913)
|+||+||.++|.+|.|+++..
T Consensus 460 R~GR~gR~~~~~v~~l~~~~t 480 (773)
T PRK13766 460 RKGRTGRQEEGRVVVLIAKGT 480 (773)
T ss_pred HhcccCcCCCCEEEEEEeCCC
Confidence 999999999999999987543
No 72
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=99.95 E-value=6.6e-28 Score=284.15 Aligned_cols=333 Identities=20% Similarity=0.284 Sum_probs=227.2
Q ss_pred HHHhhcCchhhhHHhhhc---CCCcHHHHHHHHHHHHcCCeEEEEcCCCchHHhHHHHHHHHHHHH-----hCCCCceEE
Q 002521 230 QRAWQESPEGNKMLDFRK---SLPSFKEKERLLQAIARNQVIVISGETGCGKTTQLPQYILESEIE-----SGRGAFCNI 301 (913)
Q Consensus 230 ~~~~~~~~~~~~l~~~r~---~lP~~~~q~~il~~i~~~~~vII~apTGSGKTt~~~~~ile~~~~-----~~~~~~~~I 301 (913)
...|.+......++..-+ .-+..+.|.++|++|..+++||.+|.||||||.++.++++..... .+.|+-+.|
T Consensus 364 v~sW~q~gl~~~il~tlkkl~y~k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gdGPi~li 443 (997)
T KOG0334|consen 364 VTSWTQCGLSSKILETLKKLGYEKPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGPIALI 443 (997)
T ss_pred cchHhhCCchHHHHHHHHHhcCCCCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCChhhCCCceEEE
Confidence 334666554444433221 125556689999999999999999999999999999998866542 345666667
Q ss_pred EEcchhHHHHHHHHHHHHHHhCCCcccE----eee---EEeccccCCCCceEEEEecHHHHHHHhcCC----CCCCceEE
Q 002521 302 ICTQPRRISAMAVSERVSAERGEPLGET----VGY---KVRLEGMKGKNTHLLFCTSGILLRRLLSDH----NLNGVTHV 370 (913)
Q Consensus 302 lv~qPrr~La~qva~rv~~~~~~~~g~~----vGy---~v~~e~~~~~~~~Ivv~T~g~Ll~~l~~~~----~L~~~s~I 370 (913)
++ |||+||.|+.+.+..+... ++.. +|- .-...... ..+.|+|||||+.++.+..+. .|..+.++
T Consensus 444 ~a--Ptrela~QI~r~~~kf~k~-l~ir~v~vygg~~~~~qiaelk-Rg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~l 519 (997)
T KOG0334|consen 444 LA--PTRELAMQIHREVRKFLKL-LGIRVVCVYGGSGISQQIAELK-RGAEIVVCTPGRMIDILCANSGRVTNLRRVTYL 519 (997)
T ss_pred Ec--CCHHHHHHHHHHHHHHHhh-cCceEEEecCCccHHHHHHHHh-cCCceEEeccchhhhhHhhcCCcccccccccee
Confidence 66 9999999999888775433 2221 111 11112222 448999999999999885443 56677799
Q ss_pred EeccccccCcchHHHHHHHHHhCccCccceEEEeccccCHH--HHHhhhCCCCee-ccCCccccceeeehhhHHhhhccc
Q 002521 371 FVDEIHERGMNEDFLLIVLKDLLPRRRDLRLILMSATLNAE--LFSNYFGGAPTI-HIPGFTYPVQAHFLEDVLEMTGYK 447 (913)
Q Consensus 371 IIDEaHer~~~~d~ll~llk~ll~~~~~~kiIlmSATl~~~--~~~~yf~~~~~i-~i~g~~~pv~~~yl~di~~~~~~~ 447 (913)
|+||++.+ +..-|.....+.+-..+|+.|++++|||.+.. .++.-.-..|+- .+.++..-. .+
T Consensus 520 v~deaDrm-fdmgfePq~~~Ii~nlrpdrQtvlfSatfpr~m~~la~~vl~~Pveiiv~~~svV~-----k~-------- 585 (997)
T KOG0334|consen 520 VLDEADRM-FDMGFEPQITRILQNLRPDRQTVLFSATFPRSMEALARKVLKKPVEIIVGGRSVVC-----KE-------- 585 (997)
T ss_pred eechhhhh-heeccCcccchHHhhcchhhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEccceeEe-----cc--------
Confidence 99999943 23333322222333347888999999999765 122111112221 111111000 00
Q ss_pred ccccccccchhhhhHHHHhhhhchhhhhhhHHHHHHHHHhhccccccchhhhhhhccccccc-cchhhHHHHHHHHhhhc
Q 002521 448 LTSLNQVDDYGQEKLWKTQRQLLPRKRKNQITALVEDALHKSNFENYSSRARDSLASWTADC-IGFNLIEAVLCHICRKE 526 (913)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~-~~~~li~~ll~~i~~~~ 526 (913)
+.+....+ +..+.+.+++.-+-...
T Consensus 586 ------------------------------------------------------V~q~v~V~~~e~eKf~kL~eLl~e~~ 611 (997)
T KOG0334|consen 586 ------------------------------------------------------VTQVVRVCAIENEKFLKLLELLGERY 611 (997)
T ss_pred ------------------------------------------------------ceEEEEEecCchHHHHHHHHHHHHHh
Confidence 00000000 01122333333343444
Q ss_pred CCCcEEEEcCChHHHHHHHHHHHcCCCCCCCCCeEEEEecCCCChHHHHHHhccCCCCccEEEEecchhhhcCCCCCeEE
Q 002521 527 CPGAVLVFMTGWEDISCLRDQLKSHPLLGDPNRVLLLTCHGSMPTSEQKFIFEKAPPNIRKIVLATNMAEASITINDIVF 606 (913)
Q Consensus 527 ~~g~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~g~~kVLVATniae~GIdIp~v~~ 606 (913)
..+++||||...+.+..+.+.|.+. ++.+..+||+.++.+|..+++.|++|.+++||||+++++|+|++++.+
T Consensus 612 e~~~tiiFv~~qe~~d~l~~~L~~a-------g~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsvvarGLdv~~l~L 684 (997)
T KOG0334|consen 612 EDGKTIIFVDKQEKADALLRDLQKA-------GYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSVVARGLDVKELIL 684 (997)
T ss_pred hcCCEEEEEcCchHHHHHHHHHHhc-------CcchhhhcCCCchHHHHhHHHHHhccCceEEEehhhhhcccccccceE
Confidence 5899999999999999999999975 777778999999999999999999999999999999999999999999
Q ss_pred EEeCCCCcceeecCCCCCCcCCccccCHhhHHHHhcccCCC-CCcEEEEecChh
Q 002521 607 VVDCGKAKETTYDALNNTPCLLPSWISQASARQRRGRAGRV-QPGQCYHLYPRC 659 (913)
Q Consensus 607 VId~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~-~~G~c~~L~t~~ 659 (913)
||++++| +.+ +.|.||+||+||+ +.|.||.+.+.+
T Consensus 685 vvnyd~p--------nh~----------edyvhR~gRTgragrkg~AvtFi~p~ 720 (997)
T KOG0334|consen 685 VVNYDFP--------NHY----------EDYVHRVGRTGRAGRKGAAVTFITPD 720 (997)
T ss_pred EEEcccc--------hhH----------HHHHHHhcccccCCccceeEEEeChH
Confidence 9995444 433 3578999999999 679999998874
No 73
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.95 E-value=1.3e-26 Score=260.78 Aligned_cols=306 Identities=16% Similarity=0.177 Sum_probs=180.6
Q ss_pred HHHHHHHHHHcCC--eEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHHHHHhCC-------
Q 002521 254 EKERLLQAIARNQ--VIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVSAERGE------- 324 (913)
Q Consensus 254 ~q~~il~~i~~~~--~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv~~~~~~------- 324 (913)
+|.++++++.+++ +++++||||||||.++.++++.. +.. .+++.|+++|+.|+++++...+..
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~------~~~--~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~~ 72 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHG------END--TIALYPTNALIEDQTEAIKEFVDVFKPERDV 72 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHc------CCC--EEEEeChHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 4788899998776 48899999999999998888741 123 355559999999999998876521
Q ss_pred CcccEeeeEEe----c----------c--------ccCCCCceEEEEecHHHHHHHhc---CC------CCCCceEEEec
Q 002521 325 PLGETVGYKVR----L----------E--------GMKGKNTHLLFCTSGILLRRLLS---DH------NLNGVTHVFVD 373 (913)
Q Consensus 325 ~~g~~vGy~v~----~----------e--------~~~~~~~~Ivv~T~g~Ll~~l~~---~~------~L~~~s~IIID 373 (913)
.+....|-... . + ......+.|+++||++|...+.. .+ .+.++++||||
T Consensus 73 ~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~iV~D 152 (357)
T TIGR03158 73 NLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVIFD 152 (357)
T ss_pred eEEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEEEEe
Confidence 11111111000 0 0 00112467888889888765432 11 36899999999
Q ss_pred cccccCcchH-HHH---HHHHHhCccCccceEEEeccccCHHHHH---hh-hCCCCeeccCCccccceeeehhhHH-hh-
Q 002521 374 EIHERGMNED-FLL---IVLKDLLPRRRDLRLILMSATLNAELFS---NY-FGGAPTIHIPGFTYPVQAHFLEDVL-EM- 443 (913)
Q Consensus 374 EaHer~~~~d-~ll---~llk~ll~~~~~~kiIlmSATl~~~~~~---~y-f~~~~~i~i~g~~~pv~~~yl~di~-~~- 443 (913)
|+|..+.... .++ .....+.......++|+||||++..... .. +-+.++..++|+.+.-..+ .+.. ..
T Consensus 153 E~H~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~--~~~~~~~~ 230 (357)
T TIGR03158 153 EFHLYDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKIAPIDGEKYQFPDN--PELEADNK 230 (357)
T ss_pred cccccCcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHhccccCceeeeecCcccccCCC--hhhhcccc
Confidence 9997654221 122 2222211122246999999999875333 22 1245667777763211000 0000 00
Q ss_pred -hcccccccccccchhhhhHHHHhhhhchhhhhhhHHHHHHHHHhhccccccchhhhhhhccccccccchhhHHHHHHHH
Q 002521 444 -TGYKLTSLNQVDDYGQEKLWKTQRQLLPRKRKNQITALVEDALHKSNFENYSSRARDSLASWTADCIGFNLIEAVLCHI 522 (913)
Q Consensus 444 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~li~~ll~~i 522 (913)
.+++..... +. ..... ........+. ...+.+...
T Consensus 231 ~~~~~~~~~~-i~-----------~~~~~--~~~~~~~~l~------------------------------~l~~~i~~~ 266 (357)
T TIGR03158 231 TQSFRPVLPP-VE-----------LELIP--APDFKEEELS------------------------------ELAEEVIER 266 (357)
T ss_pred ccccceeccc-eE-----------EEEEe--CCchhHHHHH------------------------------HHHHHHHHH
Confidence 000000000 00 00000 0000000000 001112222
Q ss_pred hhhcCCCcEEEEcCChHHHHHHHHHHHcCCCCCCCCCeEEEEecCCCChHHHHHHhccCCCCccEEEEecchhhhcCCCC
Q 002521 523 CRKECPGAVLVFMTGWEDISCLRDQLKSHPLLGDPNRVLLLTCHGSMPTSEQKFIFEKAPPNIRKIVLATNMAEASITIN 602 (913)
Q Consensus 523 ~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~g~~kVLVATniae~GIdIp 602 (913)
.+...++++||||+++..++.++..|+... .++.+..+||.+++.+|.++. +..|||||+++++|||||
T Consensus 267 ~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~-----~~~~~~~l~g~~~~~~R~~~~------~~~iLVaTdv~~rGiDi~ 335 (357)
T TIGR03158 267 FRQLPGERGAIILDSLDEVNRLSDLLQQQG-----LGDDIGRITGFAPKKDRERAM------QFDILLGTSTVDVGVDFK 335 (357)
T ss_pred HhccCCCeEEEEECCHHHHHHHHHHHhhhC-----CCceEEeeecCCCHHHHHHhc------cCCEEEEecHHhcccCCC
Confidence 223356789999999999999999998741 145678899999999987653 678999999999999999
Q ss_pred CeEEEEeCCCCcceeecCCCCCCcCCccccCHhhHHHHhcccC
Q 002521 603 DIVFVVDCGKAKETTYDALNNTPCLLPSWISQASARQRRGRAG 645 (913)
Q Consensus 603 ~v~~VId~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRAG 645 (913)
++ +||. . |. +.++|+||+||+|
T Consensus 336 ~~-~vi~-~-p~------------------~~~~yiqR~GR~g 357 (357)
T TIGR03158 336 RD-WLIF-S-AR------------------DAAAFWQRLGRLG 357 (357)
T ss_pred Cc-eEEE-C-CC------------------CHHHHhhhcccCC
Confidence 87 4552 1 22 5679999999998
No 74
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.95 E-value=1e-27 Score=270.15 Aligned_cols=366 Identities=19% Similarity=0.185 Sum_probs=252.4
Q ss_pred cCCCcHHHHHHHHHHHHcCCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHHHHHhCCCc
Q 002521 247 KSLPSFKEKERLLQAIARNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVSAERGEPL 326 (913)
Q Consensus 247 ~~lP~~~~q~~il~~i~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv~~~~~~~~ 326 (913)
.++-+.++|...+.+|.+++.|+|+|.|.+|||.++.-+|...+-+. -+||+|.|-++|.+|.++.+..|++. +
T Consensus 126 YPF~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~k-----QRVIYTSPIKALSNQKYREl~~EF~D-V 199 (1041)
T KOG0948|consen 126 YPFTLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLREK-----QRVIYTSPIKALSNQKYRELLEEFKD-V 199 (1041)
T ss_pred CCcccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHHhc-----CeEEeeChhhhhcchhHHHHHHHhcc-c
Confidence 45566789999999999999999999999999998888777765322 28999999999999999999998874 4
Q ss_pred ccEeeeEEeccccCCCCceEEEEecHHHHHHHhcCC-CCCCceEEEecccc-----ccCcchHHHHHHHHHhCccCccce
Q 002521 327 GETVGYKVRLEGMKGKNTHLLFCTSGILLRRLLSDH-NLNGVTHVFVDEIH-----ERGMNEDFLLIVLKDLLPRRRDLR 400 (913)
Q Consensus 327 g~~vGy~v~~e~~~~~~~~Ivv~T~g~Ll~~l~~~~-~L~~~s~IIIDEaH-----er~~~~d~ll~llk~ll~~~~~~k 400 (913)
|-..| +-..+++...+|||+++|..+|-.+. .+..+..||+||+| |||+-.+--++ -..++++
T Consensus 200 GLMTG-----DVTInP~ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIHYMRDkERGVVWEETII------llP~~vr 268 (1041)
T KOG0948|consen 200 GLMTG-----DVTINPDASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDKERGVVWEETII------LLPDNVR 268 (1041)
T ss_pred ceeec-----ceeeCCCCceeeeHHHHHHHHHhccchHhheeeeEEeeeehhccccccceeeeeeEE------eccccce
Confidence 55444 33345778999999999999997665 78999999999999 67764433222 2346789
Q ss_pred EEEecccc-CHHHHHhhhC-----CCCeeccCCccccceeeehhhHHhhhcccccccccccchhhhhHHHHhhhhchhhh
Q 002521 401 LILMSATL-NAELFSNYFG-----GAPTIHIPGFTYPVQAHFLEDVLEMTGYKLTSLNQVDDYGQEKLWKTQRQLLPRKR 474 (913)
Q Consensus 401 iIlmSATl-~~~~~~~yf~-----~~~~i~i~g~~~pv~~~yl~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (913)
.+++|||+ |+..|++|.. .|.++...-|+.|...+...- .|..+- ...|+-+ .-+
T Consensus 269 ~VFLSATiPNA~qFAeWI~~ihkQPcHVVYTdyRPTPLQHyifP~----ggdGly--lvVDek~-------------~Fr 329 (1041)
T KOG0948|consen 269 FVFLSATIPNARQFAEWICHIHKQPCHVVYTDYRPTPLQHYIFPA----GGDGLY--LVVDEKG-------------KFR 329 (1041)
T ss_pred EEEEeccCCCHHHHHHHHHHHhcCCceEEeecCCCCcceeeeecC----CCCeeE--EEEeccc-------------ccc
Confidence 99999999 7889999985 577888888888876552220 000000 0000000 000
Q ss_pred hhhHHHHHHHHHhhccccccchhhhhhhcc--ccccccchhhHHHHHHHHhhhcCCCcEEEEcCChHHHHHHHHHHHcCC
Q 002521 475 KNQITALVEDALHKSNFENYSSRARDSLAS--WTADCIGFNLIEAVLCHICRKECPGAVLVFMTGWEDISCLRDQLKSHP 552 (913)
Q Consensus 475 ~~~i~~~v~~~l~~~~~~~~~~~~~~~l~~--~~~~~~~~~li~~ll~~i~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~ 552 (913)
.+................+....... -.. ......+...+.+++..|..+ ...++|||+-++++|+..+-.+....
T Consensus 330 ednF~~am~~l~~~~~~~~~~~~~~k-~~kG~~~~~~~~~s~i~kiVkmi~~~-~~~PVIvFSFSkkeCE~~Alqm~kld 407 (1041)
T KOG0948|consen 330 EDNFQKAMSVLRKAGESDGKKKANKK-GRKGGTGGKGPGDSDIYKIVKMIMER-NYLPVIVFSFSKKECEAYALQMSKLD 407 (1041)
T ss_pred hHHHHHHHHHhhccCCCccccccccc-cccCCcCCCCCCcccHHHHHHHHHhh-cCCceEEEEecHhHHHHHHHhhccCc
Confidence 11111111111111111111000000 000 000111223455666666654 35789999999999999988876532
Q ss_pred CC-------------------CCC-------------CCeEEEEecCCCChHHHHHHhccCCCCccEEEEecchhhhcCC
Q 002521 553 LL-------------------GDP-------------NRVLLLTCHGSMPTSEQKFIFEKAPPNIRKIVLATNMAEASIT 600 (913)
Q Consensus 553 ~~-------------------~~~-------------~~~~v~~lHs~l~~~er~~v~~~f~~g~~kVLVATniae~GId 600 (913)
+. .+. ..-.|..|||||-+--.+.|.-.|.+|-+|+|+||.+++.|+|
T Consensus 408 fN~deEk~~V~~iF~nAi~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLN 487 (1041)
T KOG0948|consen 408 FNTDEEKELVETIFNNAIDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLN 487 (1041)
T ss_pred CCChhHHHHHHHHHHHHHHhcChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccC
Confidence 21 000 0125888999999999999999999999999999999999999
Q ss_pred CCCeEEEEeCCCCcceeecCCCCCCcCCccccCHhhHHHHhcccCCC---CCcEEEEecChhh
Q 002521 601 INDIVFVVDCGKAKETTYDALNNTPCLLPSWISQASARQRRGRAGRV---QPGQCYHLYPRCV 660 (913)
Q Consensus 601 Ip~v~~VId~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~---~~G~c~~L~t~~~ 660 (913)
+|+-++|. .....++.-...|||-.+|+||.|||||. ..|.|+.+..+..
T Consensus 488 MPAkTVvF----------T~~rKfDG~~fRwissGEYIQMSGRAGRRG~DdrGivIlmiDekm 540 (1041)
T KOG0948|consen 488 MPAKTVVF----------TAVRKFDGKKFRWISSGEYIQMSGRAGRRGIDDRGIVILMIDEKM 540 (1041)
T ss_pred CcceeEEE----------eeccccCCcceeeecccceEEecccccccCCCCCceEEEEecCcC
Confidence 99888774 33344444556899999999999999998 5699999987654
No 75
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.95 E-value=6.5e-27 Score=285.38 Aligned_cols=332 Identities=22% Similarity=0.243 Sum_probs=223.4
Q ss_pred cCCCcHHHHHHHHHHHHcCCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHHHHHhCCCc
Q 002521 247 KSLPSFKEKERLLQAIARNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVSAERGEPL 326 (913)
Q Consensus 247 ~~lP~~~~q~~il~~i~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv~~~~~~~~ 326 (913)
....+|.+|.+.++.+.++++|||+.+||||||.++.++|++.++..... .+.+|+ ||++||..+.+++.+.....
T Consensus 67 g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~~a-~AL~lY--PtnALa~DQ~~rl~~~~~~~- 142 (851)
T COG1205 67 GIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDPSA-RALLLY--PTNALANDQAERLRELISDL- 142 (851)
T ss_pred ccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCcCc-cEEEEe--chhhhHhhHHHHHHHHHHhC-
Confidence 34448999999999999999999999999999999999999999865443 445556 99999999999998765432
Q ss_pred ccEeeeEEe-----cc---ccCCCCceEEEEecHHHHHHHhcCC-----CCCCceEEEecccc-ccCcchHHHHHHHHHh
Q 002521 327 GETVGYKVR-----LE---GMKGKNTHLLFCTSGILLRRLLSDH-----NLNGVTHVFVDEIH-ERGMNEDFLLIVLKDL 392 (913)
Q Consensus 327 g~~vGy~v~-----~e---~~~~~~~~Ivv~T~g~Ll~~l~~~~-----~L~~~s~IIIDEaH-er~~~~d~ll~llk~l 392 (913)
+..++.... .+ .....+++|+++||.+|-.++.... .+.++++|||||+| -||....-+..+++++
T Consensus 143 ~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrGv~GS~vA~llRRL 222 (851)
T COG1205 143 PGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRGVQGSEVALLLRRL 222 (851)
T ss_pred CCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceeccccchhHHHHHHHHH
Confidence 223322221 11 1234678999999999988665433 57889999999999 4776665555555555
Q ss_pred Ccc----CccceEEEecccc-CH-HHHHhhhCCCCeeccCCccccceeeehhhHHhhhcccccccccccchhhhhHHHHh
Q 002521 393 LPR----RRDLRLILMSATL-NA-ELFSNYFGGAPTIHIPGFTYPVQAHFLEDVLEMTGYKLTSLNQVDDYGQEKLWKTQ 466 (913)
Q Consensus 393 l~~----~~~~kiIlmSATl-~~-~~~~~yf~~~~~i~i~g~~~pv~~~yl~di~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (913)
+.. ..++++|.+|||+ ++ +...++++..-...+.+...|-...+.. ...+.... .+..
T Consensus 223 ~~~~~~~~~~~q~i~~SAT~~np~e~~~~l~~~~f~~~v~~~g~~~~~~~~~--------~~~p~~~~-------~~~~- 286 (851)
T COG1205 223 LRRLRRYGSPLQIICTSATLANPGEFAEELFGRDFEVPVDEDGSPRGLRYFV--------RREPPIRE-------LAES- 286 (851)
T ss_pred HHHHhccCCCceEEEEeccccChHHHHHHhcCCcceeeccCCCCCCCceEEE--------EeCCcchh-------hhhh-
Confidence 442 2368999999999 44 4455566532222143332222211110 00000000 0000
Q ss_pred hhhchhhhhhhHHHHHHHHHhhccccccchhhhhhhccccccccchhhHHHHHHHHhhhcCCCcEEEEcCChHHHHHHHH
Q 002521 467 RQLLPRKRKNQITALVEDALHKSNFENYSSRARDSLASWTADCIGFNLIEAVLCHICRKECPGAVLVFMTGWEDISCLRD 546 (913)
Q Consensus 467 ~~~~~~~~~~~i~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~li~~ll~~i~~~~~~g~iLVF~~~~~~i~~l~~ 546 (913)
........... ++.... .++-++|||+.++..++.+..
T Consensus 287 ---~r~s~~~~~~~-------------------------------------~~~~~~--~~~~~tL~F~~sr~~~e~~~~ 324 (851)
T COG1205 287 ---IRRSALAELAT-------------------------------------LAALLV--RNGIQTLVFFRSRKQVELLYL 324 (851)
T ss_pred ---cccchHHHHHH-------------------------------------HHHHHH--HcCceEEEEEehhhhhhhhhh
Confidence 00000000000 011111 135679999999999999873
Q ss_pred HHHcCCC-CCCCCCeEEEEecCCCChHHHHHHhccCCCCccEEEEecchhhhcCCCCCeEEEEeCCCCcceeecCCCCCC
Q 002521 547 QLKSHPL-LGDPNRVLLLTCHGSMPTSEQKFIFEKAPPNIRKIVLATNMAEASITINDIVFVVDCGKAKETTYDALNNTP 625 (913)
Q Consensus 547 ~L~~~~~-~~~~~~~~v~~lHs~l~~~er~~v~~~f~~g~~kVLVATniae~GIdIp~v~~VId~g~~k~~~yd~~~~~~ 625 (913)
....... .+......+..++|+|..++|.++...|+.|+..++++||.+|-||||.++..||.+|.|..
T Consensus 325 ~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~~~~st~AlelgidiG~ldavi~~g~P~~---------- 394 (851)
T COG1205 325 SPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGELLGVIATNALELGIDIGSLDAVIAYGYPGV---------- 394 (851)
T ss_pred chhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcCCccEEecchhhhhceeehhhhhHhhcCCCCc----------
Confidence 3322110 11111345889999999999999999999999999999999999999999999999998862
Q ss_pred cCCccccCHhhHHHHhcccCCCC-CcEEEEecC
Q 002521 626 CLLPSWISQASARQRRGRAGRVQ-PGQCYHLYP 657 (913)
Q Consensus 626 ~l~~~~iSka~~~QR~GRAGR~~-~G~c~~L~t 657 (913)
|..+++||+|||||.. .+..+..+.
T Consensus 395 -------s~~~~~Q~~GRaGR~~~~~l~~~v~~ 420 (851)
T COG1205 395 -------SVLSFRQRAGRAGRRGQESLVLVVLR 420 (851)
T ss_pred -------hHHHHHHhhhhccCCCCCceEEEEeC
Confidence 5669999999999994 666555544
No 76
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.95 E-value=5e-27 Score=270.52 Aligned_cols=371 Identities=19% Similarity=0.197 Sum_probs=243.1
Q ss_pred hhcCCCcHHHHHHHHHHHHcCCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHHHHHhCC
Q 002521 245 FRKSLPSFKEKERLLQAIARNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVSAERGE 324 (913)
Q Consensus 245 ~r~~lP~~~~q~~il~~i~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv~~~~~~ 324 (913)
...++-+..+|++++.++.++..|+|+|+|.+|||.++.-+|.-. .....+.++|.|-++|.+|.++.|...+|.
T Consensus 292 ~~~pFelD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAiala-----q~h~TR~iYTSPIKALSNQKfRDFk~tF~D 366 (1248)
T KOG0947|consen 292 LIYPFELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALA-----QKHMTRTIYTSPIKALSNQKFRDFKETFGD 366 (1248)
T ss_pred hhCCCCccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHH-----HhhccceEecchhhhhccchHHHHHHhccc
Confidence 346677889999999999999999999999999998887665432 223468999999999999999999886654
Q ss_pred CcccEeeeEEeccccCCCCceEEEEecHHHHHHHhcCC-CCCCceEEEecccc-----ccCcchHHHHHHHHHhCccCcc
Q 002521 325 PLGETVGYKVRLEGMKGKNTHLLFCTSGILLRRLLSDH-NLNGVTHVFVDEIH-----ERGMNEDFLLIVLKDLLPRRRD 398 (913)
Q Consensus 325 ~~g~~vGy~v~~e~~~~~~~~Ivv~T~g~Ll~~l~~~~-~L~~~s~IIIDEaH-----er~~~~d~ll~llk~ll~~~~~ 398 (913)
+|... .+...++...++|||+++|..+|-++. .+.++.+||+||+| |||+-.+-.+++ ..++
T Consensus 367 -vgLlT-----GDvqinPeAsCLIMTTEILRsMLYrgadliRDvE~VIFDEVHYiND~eRGvVWEEViIM------lP~H 434 (1248)
T KOG0947|consen 367 -VGLLT-----GDVQINPEASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYINDVERGVVWEEVIIM------LPRH 434 (1248)
T ss_pred -cceee-----cceeeCCCcceEeehHHHHHHHHhcccchhhccceEEEeeeeecccccccccceeeeee------cccc
Confidence 23223 355566788999999999999997766 78999999999999 687655433333 3467
Q ss_pred ceEEEecccc-CHHHHHhhhCC-----CCeeccCCccccceeeehhh--HH---hhhcccccccccccchhhhhHHHHhh
Q 002521 399 LRLILMSATL-NAELFSNYFGG-----APTIHIPGFTYPVQAHFLED--VL---EMTGYKLTSLNQVDDYGQEKLWKTQR 467 (913)
Q Consensus 399 ~kiIlmSATl-~~~~~~~yf~~-----~~~i~i~g~~~pv~~~yl~d--i~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (913)
+++|++|||+ |+..|+.|.|. .-++....|+.|.+.++.-+ .. ...+.-+. ..+.. .+
T Consensus 435 V~~IlLSATVPN~~EFA~WIGRtK~K~IyViST~kRPVPLEh~l~t~~~l~kiidq~g~fl~-----~~~~~------a~ 503 (1248)
T KOG0947|consen 435 VNFILLSATVPNTLEFADWIGRTKQKTIYVISTSKRPVPLEHYLYTKKSLFKIIDQNGIFLL-----KGIKD------AK 503 (1248)
T ss_pred ceEEEEeccCCChHHHHHHhhhccCceEEEEecCCCccceEEEEEeccceehhhcccchhhh-----hcchh------hh
Confidence 8999999998 77899999983 22444556777777654322 11 00000000 00000 00
Q ss_pred hhchhhhhhhHHHHHHHHH--------hhccccccchhhhhhhcccccccc-chhhHHHHHHHHhhhcCCCcEEEEcCCh
Q 002521 468 QLLPRKRKNQITALVEDAL--------HKSNFENYSSRARDSLASWTADCI-GFNLIEAVLCHICRKECPGAVLVFMTGW 538 (913)
Q Consensus 468 ~~~~~~~~~~i~~~v~~~l--------~~~~~~~~~~~~~~~l~~~~~~~~-~~~li~~ll~~i~~~~~~g~iLVF~~~~ 538 (913)
... +...... .++..- ....-..+... .+...+..... ....+..++.++.+. .--+++|||-++
T Consensus 504 ~~~--~~~ak~~-~~~~~~~~~~rgs~~~ggk~~~~~g--~~r~~~~~~nrr~~~~~l~lin~L~k~-~lLP~VvFvFSk 577 (1248)
T KOG0947|consen 504 DSL--KKEAKFV-DVEKSDARGGRGSQKRGGKTNYHNG--GSRGSGIGKNRRKQPTWLDLINHLRKK-NLLPVVVFVFSK 577 (1248)
T ss_pred hhh--ccccccc-ccccccccccccccccCCcCCCCCC--CcccccccccccccchHHHHHHHHhhc-ccCceEEEEEcc
Confidence 000 0000000 000000 00000000000 00000000000 012345555555433 356899999999
Q ss_pred HHHHHHHHHHHcCCCCCCC-------------------C-------------CeEEEEecCCCChHHHHHHhccCCCCcc
Q 002521 539 EDISCLRDQLKSHPLLGDP-------------------N-------------RVLLLTCHGSMPTSEQKFIFEKAPPNIR 586 (913)
Q Consensus 539 ~~i~~l~~~L~~~~~~~~~-------------------~-------------~~~v~~lHs~l~~~er~~v~~~f~~g~~ 586 (913)
+.|++.++.|....+..+. . .-.++.||||+-+--..-|...|..|-+
T Consensus 578 krCde~a~~L~~~nL~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlV 657 (1248)
T KOG0947|consen 578 KRCDEYADYLTNLNLTDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLV 657 (1248)
T ss_pred ccHHHHHHHHhccCcccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCce
Confidence 9999999999864321110 0 1248889999999999999999999999
Q ss_pred EEEEecchhhhcCCCCCeEEEEeCCCCcceeecCCCCCCcCCccccCHhhHHHHhcccCCC---CCcEEEEecChh
Q 002521 587 KIVLATNMAEASITINDIVFVVDCGKAKETTYDALNNTPCLLPSWISQASARQRRGRAGRV---QPGQCYHLYPRC 659 (913)
Q Consensus 587 kVLVATniae~GIdIp~v~~VId~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~---~~G~c~~L~t~~ 659 (913)
|||+||.++++|||.|.-++|+++ +.| +|.. ....+...+|.||+|||||. ..|.++.+....
T Consensus 658 KVLFATETFAMGVNMPARtvVF~S-l~K---hDG~------efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~ 723 (1248)
T KOG0947|consen 658 KVLFATETFAMGVNMPARTVVFSS-LRK---HDGN------EFRELLPGEYTQMAGRAGRRGLDETGTVIIMCKDS 723 (1248)
T ss_pred EEEeehhhhhhhcCCCceeEEeee-hhh---ccCc------ceeecCChhHHhhhccccccccCcCceEEEEecCC
Confidence 999999999999999998888763 222 3322 22345778999999999998 568888876543
No 77
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.95 E-value=1.7e-26 Score=277.15 Aligned_cols=355 Identities=17% Similarity=0.205 Sum_probs=255.5
Q ss_pred CccccccccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHhhcCchhhhHHhhhcCCCcHHHHHHHHHHHHcC------C
Q 002521 193 PIDLAENVNMKENTDSFLDGSVMEKVLQRRSLQMRNMQRAWQESPEGNKMLDFRKSLPSFKEKERLLQAIARN------Q 266 (913)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~lP~~~~q~~il~~i~~~------~ 266 (913)
..+.+.|.. ...+....-.+...++++-++.+-....-++....+++..+...+++--++-|...++.+.+. .
T Consensus 538 kLG~~~W~k-~K~K~~~~v~diA~eLi~lyA~R~~~~G~af~~d~~~q~~F~~~FPyeET~DQl~AI~eVk~DM~~~kpM 616 (1139)
T COG1197 538 KLGGGAWKK-AKAKARKKVRDIAAELIKLYAKRQAKKGFAFPPDTEWQEEFEASFPYEETPDQLKAIEEVKRDMESGKPM 616 (1139)
T ss_pred ccCcHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCChHHHHHHHhcCCCcCCHHHHHHHHHHHHHhccCCcc
Confidence 444445554 222222333444555666666665555555667778888888888888888888888888653 3
Q ss_pred eEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHHHHHhCCCcccEeeeEEecc---------
Q 002521 267 VIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVSAERGEPLGETVGYKVRLE--------- 337 (913)
Q Consensus 267 ~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv~~~~~~~~g~~vGy~v~~e--------- 337 (913)
+=+|||..|-|||.++.-++..... .|+++.|+| ||..||.|.++.|.+.+ ..+...|+.-.||.
T Consensus 617 DRLiCGDVGFGKTEVAmRAAFkAV~---~GKQVAvLV--PTTlLA~QHy~tFkeRF-~~fPV~I~~LSRF~s~kE~~~il 690 (1139)
T COG1197 617 DRLICGDVGFGKTEVAMRAAFKAVM---DGKQVAVLV--PTTLLAQQHYETFKERF-AGFPVRIEVLSRFRSAKEQKEIL 690 (1139)
T ss_pred hheeecCcCCcHHHHHHHHHHHHhc---CCCeEEEEc--ccHHhHHHHHHHHHHHh-cCCCeeEEEecccCCHHHHHHHH
Confidence 7799999999999999988887663 345555555 99999999999996644 34556666656653
Q ss_pred -ccCCCCceEEEEecHHHHHHHhcCCCCCCceEEEeccccccCcchHHHHHHHHHhCccCccceEEEecccc-CHHHHHh
Q 002521 338 -GMKGKNTHLLFCTSGILLRRLLSDHNLNGVTHVFVDEIHERGMNEDFLLIVLKDLLPRRRDLRLILMSATL-NAELFSN 415 (913)
Q Consensus 338 -~~~~~~~~Ivv~T~g~Ll~~l~~~~~L~~~s~IIIDEaHer~~~~d~ll~llk~ll~~~~~~kiIlmSATl-~~~~~~~ 415 (913)
....+..+|+|+|. ++|..+-.+.+++++||||-|+.|+..---+ ...+.++-++-||||+ +...-.+
T Consensus 691 ~~la~G~vDIvIGTH----rLL~kdv~FkdLGLlIIDEEqRFGVk~KEkL------K~Lr~~VDvLTLSATPIPRTL~Ms 760 (1139)
T COG1197 691 KGLAEGKVDIVIGTH----RLLSKDVKFKDLGLLIIDEEQRFGVKHKEKL------KELRANVDVLTLSATPIPRTLNMS 760 (1139)
T ss_pred HHHhcCCccEEEech----HhhCCCcEEecCCeEEEechhhcCccHHHHH------HHHhccCcEEEeeCCCCcchHHHH
Confidence 33457789999998 5556666899999999999998888764222 2234678899999998 4443333
Q ss_pred hhC--CCCeecc-CCccccceeeehhhHHhhhcccccccccccchhhhhHHHHhhhhchhhhhhhHHHHHHHHHhhcccc
Q 002521 416 YFG--GAPTIHI-PGFTYPVQAHFLEDVLEMTGYKLTSLNQVDDYGQEKLWKTQRQLLPRKRKNQITALVEDALHKSNFE 492 (913)
Q Consensus 416 yf~--~~~~i~i-~g~~~pv~~~yl~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~~l~~~~~~ 492 (913)
..| +-.+|.. |...+||..+..+.- ...+.++
T Consensus 761 m~GiRdlSvI~TPP~~R~pV~T~V~~~d--------------------------------------~~~ireA------- 795 (1139)
T COG1197 761 LSGIRDLSVIATPPEDRLPVKTFVSEYD--------------------------------------DLLIREA------- 795 (1139)
T ss_pred HhcchhhhhccCCCCCCcceEEEEecCC--------------------------------------hHHHHHH-------
Confidence 333 2333433 456678877664310 0112221
Q ss_pred ccchhhhhhhccccccccchhhHHHHHHHHhhhcCCCcEEEEcCChHHHHHHHHHHHcCCCCCCCCCeEEEEecCCCChH
Q 002521 493 NYSSRARDSLASWTADCIGFNLIEAVLCHICRKECPGAVLVFMTGWEDISCLRDQLKSHPLLGDPNRVLLLTCHGSMPTS 572 (913)
Q Consensus 493 ~~~~~~~~~l~~~~~~~~~~~li~~ll~~i~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lHs~l~~~ 572 (913)
++..+ .++|.+....|..+.|+.+++.|+.. .+...|...||.|+..
T Consensus 796 -------------------------I~REl---~RgGQvfYv~NrV~~Ie~~~~~L~~L-----VPEarI~vaHGQM~e~ 842 (1139)
T COG1197 796 -------------------------ILREL---LRGGQVFYVHNRVESIEKKAERLREL-----VPEARIAVAHGQMRER 842 (1139)
T ss_pred -------------------------HHHHH---hcCCEEEEEecchhhHHHHHHHHHHh-----CCceEEEEeecCCCHH
Confidence 12222 36899999999999999999999986 2467799999999999
Q ss_pred HHHHHhccCCCCccEEEEecchhhhcCCCCCeEEEEeCCCCcceeecCCCCCCcCCccccCHhhHHHHhcccCCC-CCcE
Q 002521 573 EQKFIFEKAPPNIRKIVLATNMAEASITINDIVFVVDCGKAKETTYDALNNTPCLLPSWISQASARQRRGRAGRV-QPGQ 651 (913)
Q Consensus 573 er~~v~~~f~~g~~kVLVATniae~GIdIp~v~~VId~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~-~~G~ 651 (913)
+-+.++..|-+|..+|||||.|.|+|||||+++.+|--..- .- .-++..|.+||+||. ..|+
T Consensus 843 eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiIIe~AD-------~f----------GLsQLyQLRGRVGRS~~~AY 905 (1139)
T COG1197 843 ELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTIIIERAD-------KF----------GLAQLYQLRGRVGRSNKQAY 905 (1139)
T ss_pred HHHHHHHHHHcCCCCEEEEeeeeecCcCCCCCceEEEeccc-------cc----------cHHHHHHhccccCCccceEE
Confidence 99999999999999999999999999999999666631111 11 345777999999999 8899
Q ss_pred EEEecChh
Q 002521 652 CYHLYPRC 659 (913)
Q Consensus 652 c~~L~t~~ 659 (913)
||.||+..
T Consensus 906 AYfl~p~~ 913 (1139)
T COG1197 906 AYFLYPPQ 913 (1139)
T ss_pred EEEeecCc
Confidence 99999853
No 78
>PRK09401 reverse gyrase; Reviewed
Probab=99.95 E-value=3.7e-26 Score=286.71 Aligned_cols=298 Identities=15% Similarity=0.143 Sum_probs=191.5
Q ss_pred HHHHHHHHhhcCchhhhHHhhhcCCCcHHHHHHHHHHHHcCCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEc
Q 002521 225 QMRNMQRAWQESPEGNKMLDFRKSLPSFKEKERLLQAIARNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICT 304 (913)
Q Consensus 225 ~~~~~~~~~~~~~~~~~l~~~r~~lP~~~~q~~il~~i~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~ 304 (913)
.+......|..-.++.++++.......+++|.++++.+..+++++++||||||||+.+ +++...+. .++.. ++++
T Consensus 55 ~~~~~~~~~~~~~~~~~~f~~~~G~~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~f~-l~~~~~l~--~~g~~--alIL 129 (1176)
T PRK09401 55 EYEELYNLEEEYKEFEKFFKKKTGSKPWSLQRTWAKRLLLGESFAIIAPTGVGKTTFG-LVMSLYLA--KKGKK--SYII 129 (1176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHCCCcEEEEcCCCCCHHHHH-HHHHHHHH--hcCCe--EEEE
Confidence 3444555555666777777777677888999999999999999999999999999643 33333332 23444 4444
Q ss_pred chhHHHHHHHHHHHHHHhCCCcccEeeeEEec------------cccCCCCceEEEEecHHHHHHHhcCCCCCCceEEEe
Q 002521 305 QPRRISAMAVSERVSAERGEPLGETVGYKVRL------------EGMKGKNTHLLFCTSGILLRRLLSDHNLNGVTHVFV 372 (913)
Q Consensus 305 qPrr~La~qva~rv~~~~~~~~g~~vGy~v~~------------e~~~~~~~~Ivv~T~g~Ll~~l~~~~~L~~~s~III 372 (913)
+|||+||.|+++++..... ..+..+...... +......++|+|+|||.|.+.+. ......+++|||
T Consensus 130 ~PTreLa~Qi~~~l~~l~~-~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~-~l~~~~~~~lVv 207 (1176)
T PRK09401 130 FPTRLLVEQVVEKLEKFGE-KVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD-ELPKKKFDFVFV 207 (1176)
T ss_pred eccHHHHHHHHHHHHHHhh-hcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH-hccccccCEEEE
Confidence 5999999999999976543 222222111111 11123458999999999998875 234566999999
Q ss_pred cccccc--------------CcchHHHHHHHHHhCc---------------------cCccceEEEeccccCHHHHH-hh
Q 002521 373 DEIHER--------------GMNEDFLLIVLKDLLP---------------------RRRDLRLILMSATLNAELFS-NY 416 (913)
Q Consensus 373 DEaHer--------------~~~~d~ll~llk~ll~---------------------~~~~~kiIlmSATl~~~~~~-~y 416 (913)
||||.. |+..+.+...+..+-. ...+.+++++|||+++.... .+
T Consensus 208 DEaD~~L~~~k~id~~l~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~~l 287 (1176)
T PRK09401 208 DDVDAVLKSSKNIDKLLYLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRVKL 287 (1176)
T ss_pred EChHHhhhcccchhhHHHhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHHHH
Confidence 999952 2322212111211110 01156899999999754221 22
Q ss_pred hCCCCeeccCCccc---cceeeehhhHHhhhcccccccccccchhhhhHHHHhhhhchhhhhhhHHHHHHHHHhhccccc
Q 002521 417 FGGAPTIHIPGFTY---PVQAHFLEDVLEMTGYKLTSLNQVDDYGQEKLWKTQRQLLPRKRKNQITALVEDALHKSNFEN 493 (913)
Q Consensus 417 f~~~~~i~i~g~~~---pv~~~yl~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~~l~~~~~~~ 493 (913)
|...-.+.+..... .+...|..
T Consensus 288 ~~~ll~~~v~~~~~~~rnI~~~yi~------------------------------------------------------- 312 (1176)
T PRK09401 288 FRELLGFEVGSPVFYLRNIVDSYIV------------------------------------------------------- 312 (1176)
T ss_pred hhccceEEecCcccccCCceEEEEE-------------------------------------------------------
Confidence 32211122211100 01111100
Q ss_pred cchhhhhhhccccccccchhhHHHHHHHHhhhcCCCcEEEEcCChHH---HHHHHHHHHcCCCCCCCCCeEEEEecCCCC
Q 002521 494 YSSRARDSLASWTADCIGFNLIEAVLCHICRKECPGAVLVFMTGWED---ISCLRDQLKSHPLLGDPNRVLLLTCHGSMP 570 (913)
Q Consensus 494 ~~~~~~~~l~~~~~~~~~~~li~~ll~~i~~~~~~g~iLVF~~~~~~---i~~l~~~L~~~~~~~~~~~~~v~~lHs~l~ 570 (913)
.. + ....+..+.... +..+||||++... ++.+++.|... ++.+..+||+|
T Consensus 313 ----------------~~-~-k~~~L~~ll~~l-~~~~LIFv~t~~~~~~ae~l~~~L~~~-------gi~v~~~hg~l- 365 (1176)
T PRK09401 313 ----------------DE-D-SVEKLVELVKRL-GDGGLIFVPSDKGKEYAEELAEYLEDL-------GINAELAISGF- 365 (1176)
T ss_pred ----------------cc-c-HHHHHHHHHHhc-CCCEEEEEecccChHHHHHHHHHHHHC-------CCcEEEEeCcH-
Confidence 00 0 011122222222 3469999999777 99999999986 78899999999
Q ss_pred hHHHHHHhccCCCCccEEEEe----cchhhhcCCCCC-eEEEEeCCCCcc
Q 002521 571 TSEQKFIFEKAPPNIRKIVLA----TNMAEASITIND-IVFVVDCGKAKE 615 (913)
Q Consensus 571 ~~er~~v~~~f~~g~~kVLVA----Tniae~GIdIp~-v~~VId~g~~k~ 615 (913)
++.++.|++|+.+|||| ||++++|||||+ |++||++|.|+-
T Consensus 366 ----~~~l~~F~~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~~ 411 (1176)
T PRK09401 366 ----ERKFEKFEEGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPKF 411 (1176)
T ss_pred ----HHHHHHHHCCCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCCE
Confidence 23459999999999999 699999999999 899999999983
No 79
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=99.94 E-value=2.5e-28 Score=278.72 Aligned_cols=566 Identities=9% Similarity=-0.177 Sum_probs=437.1
Q ss_pred hhhHHhhhcCCCcHHHHHHHHHHHHcCCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHH
Q 002521 239 GNKMLDFRKSLPSFKEKERLLQAIARNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERV 318 (913)
Q Consensus 239 ~~~l~~~r~~lP~~~~q~~il~~i~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv 318 (913)
...+...+.-+|+....+.|++++..|.++++.+.||||||++.++.++++........-|.+++++||++.|.....+.
T Consensus 395 v~~I~getgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiaerva~er~e~~g~tvgy~vRf~Sa~prpyg~ 474 (1282)
T KOG0921|consen 395 VVIIKGETGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAERVANERGEEVGETCGYNVRFDSATPRPYGS 474 (1282)
T ss_pred eeeEeecccccchhHHHHHHHHHHhhccccccccceeccccccchHHHHHHHHHhhHHhhcccccccccccccccccccc
Confidence 34455566778999999999999999999999999999999999999999998877777789999999999999999998
Q ss_pred HHHhCCCcccEeeeEEeccccCC-CCceEEEEecHHHHHHHhcCCCCCCceEEEeccccccCcchHHHHHHHHHhCccCc
Q 002521 319 SAERGEPLGETVGYKVRLEGMKG-KNTHLLFCTSGILLRRLLSDHNLNGVTHVFVDEIHERGMNEDFLLIVLKDLLPRRR 397 (913)
Q Consensus 319 ~~~~~~~~g~~vGy~v~~e~~~~-~~~~Ivv~T~g~Ll~~l~~~~~L~~~s~IIIDEaHer~~~~d~ll~llk~ll~~~~ 397 (913)
.-++++.++...+|.++++.... .+.-+-++|.+.|+..+.. .+.+..+.+.||.|++++++|++..++..+ +
T Consensus 475 i~fctvgvllr~~e~glrg~sh~i~deiherdv~~dfll~~lr--~m~~ty~dl~v~lmsatIdTd~f~~~f~~~----p 548 (1282)
T KOG0921|consen 475 IMFCTVGVLLRMMENGLRGISHVIIDEIHERDVDTDFVLIVLR--EMISTYRDLRVVLMSATIDTDLFTNFFSSI----P 548 (1282)
T ss_pred eeeeccchhhhhhhhcccccccccchhhhhhccchHHHHHHHH--hhhccchhhhhhhhhcccchhhhhhhhccc----c
Confidence 88888888888888877654432 3345678999988887754 345677899999999999999999887654 2
Q ss_pred cceEEEeccccCHHHHHhhhCCCCeeccCCccccceeeehhhHHhhhcc-cccccccccchhhhhHHHHhhhhch-hhhh
Q 002521 398 DLRLILMSATLNAELFSNYFGGAPTIHIPGFTYPVQAHFLEDVLEMTGY-KLTSLNQVDDYGQEKLWKTQRQLLP-RKRK 475 (913)
Q Consensus 398 ~~kiIlmSATl~~~~~~~yf~~~~~i~i~g~~~pv~~~yl~di~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 475 (913)
++.++++|.+...|-.++-.++..++++++++++.++.++-...... +....+...+ ............ ...+
T Consensus 549 --~~~~~grt~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~n~n~~~d---d~~~~~~~~am~~~se~ 623 (1282)
T KOG0921|consen 549 --DVTVHGRTFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGRNMNILCD---PSYNESTRTAMSRLSEK 623 (1282)
T ss_pred --ceeeccccccHHHHHHHHhhhhhhccCCCcCccchhhcccccCchhhhcccccccccC---hhhcchhhhhhhcchhh
Confidence 46999999999999988889999999999999988875543211100 0000111100 000000000000 0001
Q ss_pred hhHHHHHHHHHhhccccccchhhhhhhccccccccchhhHHHHHHHHhhhcCCCcEEEEcCChHHHHHHHHHHHcCCCCC
Q 002521 476 NQITALVEDALHKSNFENYSSRARDSLASWTADCIGFNLIEAVLCHICRKECPGAVLVFMTGWEDISCLRDQLKSHPLLG 555 (913)
Q Consensus 476 ~~i~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~li~~ll~~i~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~~ 555 (913)
.....+++..+.. .+...+...|..-.+++..|+|++++.-+......+...+.++
T Consensus 624 d~~f~l~Eal~~~------------------------i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp 679 (1282)
T KOG0921|consen 624 DIPFGLIEALLND------------------------IASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILP 679 (1282)
T ss_pred cchhHHHHHHHhh------------------------hcccCCccceeeecCchHHhhhhhhhhhhhhhhccchhccccc
Confidence 1111222222111 1111122233333478899999999999988888888776665
Q ss_pred CCCCeEEEEecCCCChHHHHHHhccCCCCccEEEEecchhhhcCCCCCeEEEEeCCCCcceeecCCCCCCcCCccccCHh
Q 002521 556 DPNRVLLLTCHGSMPTSEQKFIFEKAPPNIRKIVLATNMAEASITINDIVFVVDCGKAKETTYDALNNTPCLLPSWISQA 635 (913)
Q Consensus 556 ~~~~~~v~~lHs~l~~~er~~v~~~f~~g~~kVLVATniae~GIdIp~v~~VId~g~~k~~~yd~~~~~~~l~~~~iSka 635 (913)
.. ...+...|..+...+++.+++....+.++++..|...++.|.+.++.+|++++..+.+.+-+...++.+-+.|-+..
T Consensus 680 ~H-sq~~~~eqrkvf~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr 758 (1282)
T KOG0921|consen 680 LH-SQLTSQEQRKVFEPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGR 758 (1282)
T ss_pred ch-hhcccHhhhhccCcccccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhccc
Confidence 43 56778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhcccCCCCCcEEEEecChhhHHhhhhCCCCcccccChhhHHHHHhhcCCCCHHHHHHhccCCCchHHHHHHHHHH
Q 002521 636 SARQRRGRAGRVQPGQCYHLYPRCVYEAFAEYQLPELLRTPLNSLCLQIKSLQVGSIGEFLSAALQPPEPLAVQNAVDFL 715 (913)
Q Consensus 636 ~~~QR~GRAGR~~~G~c~~L~t~~~~~~l~~~~~pEi~r~~L~~~~L~lk~l~~~~~~~fl~~~l~pP~~~~i~~al~~L 715 (913)
...||.|||+|...+.||.++....+..|..+.++||.++++....+.++.+-.+.+..++.++..+|+......+.-.+
T Consensus 759 ~grvR~G~~f~lcs~arF~~l~~~~t~em~r~plhemalTikll~l~SI~~fl~kal~~~p~dav~e~e~~l~~m~~ld~ 838 (1282)
T KOG0921|consen 759 AGRVRPGFCFHLCSRARFEALEDHGTAEMFRTPLHEIALTIKLLRLGSIGEFLGKALQPPPYDAVIEAEAVLREMGALDA 838 (1282)
T ss_pred CceecccccccccHHHHHHHHHhcCcHhhhcCccHHHHhhHHHHHhhhHHHHHhhccCCCchhhccCchHHHHHhhhhhc
Confidence 99999999999999999999999999999999999999999888888888877777777877888888776665554444
Q ss_pred HHcCCCCCCCCcccccccccccCCChHHHHHHHHhhhccChHHHHHHHhhccCCCCCcCChhhHHHHHHHhcccCCCChh
Q 002521 716 KRIGALDEKENLTNLGKFLSMLPVDPKLGKMLVMGAIFRCFDPVLTIVSGLSVRDPFLLPQEKKNLAEIAKSRFSAKDYS 795 (913)
Q Consensus 716 ~~~gald~~~~lT~lG~~ls~lpl~p~~~k~ll~~~~~~cl~~~l~i~a~ls~~~~f~~p~~~~~~~~~~~~~~~~~~~s 795 (913)
...-+.+.+..+|++|+.....|+.|..|++...++.+-..+...+++++-....+|...-.++. -+...|+++-.+
T Consensus 839 n~elt~lg~~la~l~iep~~~k~~~lg~~~g~~~~m~~~as~~s~~~~~~~~~~~~~rl~g~q~~---~~g~kfsdhva~ 915 (1282)
T KOG0921|consen 839 NDELTPLGRMLARLPIEPRIGKMMILGTALGAGSVMCDVASAMSFPTPFVPREKHHSRLSGTQRK---FAGNKFSDHVAI 915 (1282)
T ss_pred cCcccchhhhhhhccCcccccceeeechhhccchhhhhhhcccccccccccccccccccccchhh---ccccccccchhh
Confidence 44444455557899999999999999999998888777666666666666566677765443333 356789999999
Q ss_pred hHHHHHHHHHHHHHHhhc-CCcHHHHHHhccChhhHHHHHHHHHHHHHHH
Q 002521 796 DHMALVRAYEGWKDAERE-GSGYEYCWRNFLSAQTLQAIHSLRKQFTFIL 844 (913)
Q Consensus 796 Dhl~ll~af~~w~~~~~~-~~~~~~c~~~~l~~~~l~~~~~~r~ql~~~l 844 (913)
||.+++..|+.|..+... .....||..+-+...++.+-.++..||. ++
T Consensus 916 ~~v~q~~r~~~q~ga~~e~efc~r~~l~~~~~~~t~~a~~ql~d~L~-q~ 964 (1282)
T KOG0921|consen 916 VSVIQGYREAVQMGAAAEREFCERYSLSNPVLKMTDGARRQLIDVLR-QC 964 (1282)
T ss_pred hhhhhhhHHHhhhhhhhhhhHhHhhhhcchhhhhhhhhHHHHHHHHH-hc
Confidence 999999999999977643 3466899999999999998888888877 44
No 80
>PRK14701 reverse gyrase; Provisional
Probab=99.94 E-value=2.5e-25 Score=284.63 Aligned_cols=341 Identities=15% Similarity=0.104 Sum_probs=213.1
Q ss_pred HHHHHHHHhhcCchhhhHHhhhcCCCcHHHHHHHHHHHHcCCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEc
Q 002521 225 QMRNMQRAWQESPEGNKMLDFRKSLPSFKEKERLLQAIARNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICT 304 (913)
Q Consensus 225 ~~~~~~~~~~~~~~~~~l~~~r~~lP~~~~q~~il~~i~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~ 304 (913)
.+......|..-.++.++++.-..+..+..|.++++.+..++++++.||||||||+.+..+.+.. ..++. .++++
T Consensus 54 ~~~~~~~~~~~~~~~~~~f~~~~G~~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~---~~~g~--~aLVl 128 (1638)
T PRK14701 54 FWEDFYILWNEVEEFEEFFEKITGFEFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFL---ALKGK--KCYII 128 (1638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHH---HhcCC--eEEEE
Confidence 34445555666667777776645556788999999999999999999999999998433333322 12333 45555
Q ss_pred chhHHHHHHHHHHHHHHhCC-CcccEeeeEEec----------cccCCCCceEEEEecHHHHHHHhcCCCCCCceEEEec
Q 002521 305 QPRRISAMAVSERVSAERGE-PLGETVGYKVRL----------EGMKGKNTHLLFCTSGILLRRLLSDHNLNGVTHVFVD 373 (913)
Q Consensus 305 qPrr~La~qva~rv~~~~~~-~~g~~vGy~v~~----------e~~~~~~~~Ivv~T~g~Ll~~l~~~~~L~~~s~IIID 373 (913)
.|||+|+.|+++.+...... .++..+.+-... +....+..+|+|+|||.|.+.+..... .++++||||
T Consensus 129 ~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l~~-~~i~~iVVD 207 (1638)
T PRK14701 129 LPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEMKH-LKFDFIFVD 207 (1638)
T ss_pred ECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHHhh-CCCCEEEEE
Confidence 59999999999999764321 112222221110 112234589999999999876643222 679999999
Q ss_pred ccccc--------------CcchHHHHH---HH------------------HHhCcc-Cccce-EEEeccccCH-HHHHh
Q 002521 374 EIHER--------------GMNEDFLLI---VL------------------KDLLPR-RRDLR-LILMSATLNA-ELFSN 415 (913)
Q Consensus 374 EaHer--------------~~~~d~ll~---ll------------------k~ll~~-~~~~k-iIlmSATl~~-~~~~~ 415 (913)
|||+. |+..++... ++ ...+.. ....+ ++++|||+++ .....
T Consensus 208 EAD~ml~~~knid~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~~~~~ 287 (1638)
T PRK14701 208 DVDAFLKASKNIDRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKGDRVK 287 (1638)
T ss_pred CceeccccccccchhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchhHHHH
Confidence 99954 444444321 11 011111 12223 6779999975 34445
Q ss_pred hhCCCCeeccCCcccc---ceeeehhhHHhhhcccccccccccchhhhhHHHHhhhhchhhhhhhHHHHHHHHHhhcccc
Q 002521 416 YFGGAPTIHIPGFTYP---VQAHFLEDVLEMTGYKLTSLNQVDDYGQEKLWKTQRQLLPRKRKNQITALVEDALHKSNFE 492 (913)
Q Consensus 416 yf~~~~~i~i~g~~~p---v~~~yl~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~~l~~~~~~ 492 (913)
+|...-.+.+...... +...|..
T Consensus 288 l~~~~l~f~v~~~~~~lr~i~~~yi~------------------------------------------------------ 313 (1638)
T PRK14701 288 LYRELLGFEVGSGRSALRNIVDVYLN------------------------------------------------------ 313 (1638)
T ss_pred HhhcCeEEEecCCCCCCCCcEEEEEE------------------------------------------------------
Confidence 5543333333211100 1111100
Q ss_pred ccchhhhhhhccccccccchhhHHHHHHHHhhhcCCCcEEEEcCChHH---HHHHHHHHHcCCCCCCCCCeEEEEecCCC
Q 002521 493 NYSSRARDSLASWTADCIGFNLIEAVLCHICRKECPGAVLVFMTGWED---ISCLRDQLKSHPLLGDPNRVLLLTCHGSM 569 (913)
Q Consensus 493 ~~~~~~~~~l~~~~~~~~~~~li~~ll~~i~~~~~~g~iLVF~~~~~~---i~~l~~~L~~~~~~~~~~~~~v~~lHs~l 569 (913)
....... .+..+.... +..+||||++++. ++.+++.|... ++.+..+||+
T Consensus 314 -----------------~~~~~k~-~L~~ll~~~-g~~gIVF~~t~~~~e~ae~la~~L~~~-------Gi~a~~~h~~- 366 (1638)
T PRK14701 314 -----------------PEKIIKE-HVRELLKKL-GKGGLIFVPIDEGAEKAEEIEKYLLED-------GFKIELVSAK- 366 (1638)
T ss_pred -----------------CCHHHHH-HHHHHHHhC-CCCeEEEEeccccchHHHHHHHHHHHC-------CCeEEEecch-
Confidence 0000000 122222222 3568999999875 58999999986 8899999995
Q ss_pred ChHHHHHHhccCCCCccEEEEec----chhhhcCCCCC-eEEEEeCCCCccee----ecCCCCCCcCCccccCHhhHHHH
Q 002521 570 PTSEQKFIFEKAPPNIRKIVLAT----NMAEASITIND-IVFVVDCGKAKETT----YDALNNTPCLLPSWISQASARQR 640 (913)
Q Consensus 570 ~~~er~~v~~~f~~g~~kVLVAT----niae~GIdIp~-v~~VId~g~~k~~~----yd~~~~~~~l~~~~iSka~~~QR 640 (913)
|..+++.|++|+.+||||| +++++|||+|+ |+|||++|.|+-.. |...... + +. .....++
T Consensus 367 ----R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~--~---~~-~~~~~~~ 436 (1638)
T PRK14701 367 ----NKKGFDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYR--I---LG-LLSEILK 436 (1638)
T ss_pred ----HHHHHHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhh--h---hc-chHHHHH
Confidence 8899999999999999999 59999999999 89999999999321 1110000 0 01 2234577
Q ss_pred hcccCCC-CCcEEEEecChhhHH
Q 002521 641 RGRAGRV-QPGQCYHLYPRCVYE 662 (913)
Q Consensus 641 ~GRAGR~-~~G~c~~L~t~~~~~ 662 (913)
.|||||. .++.|+..+....+.
T Consensus 437 ~~~a~~~g~~~~~~~~~~~~~~~ 459 (1638)
T PRK14701 437 IEEELKEGIPIEGVLDVFPEDVE 459 (1638)
T ss_pred hhhhcccCCcchhHHHhHHHHHH
Confidence 8999999 577887666555544
No 81
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.94 E-value=2.7e-25 Score=267.11 Aligned_cols=370 Identities=18% Similarity=0.237 Sum_probs=248.0
Q ss_pred hhcCCCcHHHHHHHHHHHHcCCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHHHHHhCC
Q 002521 245 FRKSLPSFKEKERLLQAIARNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVSAERGE 324 (913)
Q Consensus 245 ~r~~lP~~~~q~~il~~i~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv~~~~~~ 324 (913)
....+.++.+|++.+.+|.++..|+|+||||||||.++.-++...+.. + .++++|.|.++|.+|.+..+...+|.
T Consensus 114 ~~~~F~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~~-~----qrviYTsPIKALsNQKyrdl~~~fgd 188 (1041)
T COG4581 114 REYPFELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALRD-G----QRVIYTSPIKALSNQKYRDLLAKFGD 188 (1041)
T ss_pred HhCCCCcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHHc-C----CceEeccchhhhhhhHHHHHHHHhhh
Confidence 357788899999999999999999999999999999888777665532 2 24899999999999999999998885
Q ss_pred CcccEeeeEEeccccCCCCceEEEEecHHHHHHHhcC-CCCCCceEEEecccc-----ccCcchHHHHHHHHHhCccCcc
Q 002521 325 PLGETVGYKVRLEGMKGKNTHLLFCTSGILLRRLLSD-HNLNGVTHVFVDEIH-----ERGMNEDFLLIVLKDLLPRRRD 398 (913)
Q Consensus 325 ~~g~~vGy~v~~e~~~~~~~~Ivv~T~g~Ll~~l~~~-~~L~~~s~IIIDEaH-----er~~~~d~ll~llk~ll~~~~~ 398 (913)
- ...+|.-.+ +-..++++.++|+|+++|.+++..+ ..+.++.+||+||+| +||+-.+..+++ ...+
T Consensus 189 v-~~~vGL~TG-Dv~IN~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D~eRG~VWEE~Ii~------lP~~ 260 (1041)
T COG4581 189 V-ADMVGLMTG-DVSINPDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDRERGVVWEEVIIL------LPDH 260 (1041)
T ss_pred h-hhhccceec-ceeeCCCCceEEeeHHHHHHHhccCcccccccceEEEEeeeeccccccchhHHHHHHh------cCCC
Confidence 4 223343222 3345678899999999999999776 489999999999999 566655444433 2356
Q ss_pred ceEEEecccc-CHHHHHhhhC-----CCCeeccCCccccceeeehhh--HHhhhcccccccccccchhhhhHHHHhhhhc
Q 002521 399 LRLILMSATL-NAELFSNYFG-----GAPTIHIPGFTYPVQAHFLED--VLEMTGYKLTSLNQVDDYGQEKLWKTQRQLL 470 (913)
Q Consensus 399 ~kiIlmSATl-~~~~~~~yf~-----~~~~i~i~g~~~pv~~~yl~d--i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (913)
+++|+||||+ |++.|+.|++ ++.++..+.|..|...++... +..+...... ...+ ..
T Consensus 261 v~~v~LSATv~N~~EF~~Wi~~~~~~~~~vv~t~~RpvPL~~~~~~~~~l~~lvde~~~-------~~~~-----~~--- 325 (1041)
T COG4581 261 VRFVFLSATVPNAEEFAEWIQRVHSQPIHVVSTEHRPVPLEHFVYVGKGLFDLVDEKKK-------FNAE-----NF--- 325 (1041)
T ss_pred CcEEEEeCCCCCHHHHHHHHHhccCCCeEEEeecCCCCCeEEEEecCCceeeeeccccc-------chhh-----cc---
Confidence 7999999999 8899999997 466777888889988887653 1011100000 0000 00
Q ss_pred hhhhhhhHHHHHHHHHhhccccc-cchhhhhhhccccccccchhhHHHHHHHHhhhcCCCcEEEEcCChHHHHHHHHHHH
Q 002521 471 PRKRKNQITALVEDALHKSNFEN-YSSRARDSLASWTADCIGFNLIEAVLCHICRKECPGAVLVFMTGWEDISCLRDQLK 549 (913)
Q Consensus 471 ~~~~~~~i~~~v~~~l~~~~~~~-~~~~~~~~l~~~~~~~~~~~li~~ll~~i~~~~~~g~iLVF~~~~~~i~~l~~~L~ 549 (913)
......+....+......+... ......... ...........+++.++.. .+.-++++|+=++..|+..+..+.
T Consensus 326 -~~a~~~l~~~~~~~~~~~~~~~~~~a~~~~~~---~~~~~~~~~~~~iv~~l~~-~~~lP~I~F~FSr~~Ce~~a~~~~ 400 (1041)
T COG4581 326 -PSANRSLSCFSEKVRETDDGDVGRYARRTKAL---RGSAKGPAGRPEIVNKLDK-DNLLPAIVFSFSRRGCEEAAQILS 400 (1041)
T ss_pred -hhhhhhhhccchhccccCcccccccccccccc---CCcccccccchHHHhhhhh-hcCCceEEEEEchhhHHHHHHHhc
Confidence 0000000000000000000000 000000000 0011122222333444432 345689999999999988887776
Q ss_pred cCCC--------------------CCCC-C-------------CeEEEEecCCCChHHHHHHhccCCCCccEEEEecchh
Q 002521 550 SHPL--------------------LGDP-N-------------RVLLLTCHGSMPTSEQKFIFEKAPPNIRKIVLATNMA 595 (913)
Q Consensus 550 ~~~~--------------------~~~~-~-------------~~~v~~lHs~l~~~er~~v~~~f~~g~~kVLVATnia 595 (913)
...+ +... . .-.+..||+||-+..+..+...|..|-+||++||.++
T Consensus 401 ~ldl~~~~~~e~~i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~ 480 (1041)
T COG4581 401 TLDLVLTEEKERAIREIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETF 480 (1041)
T ss_pred ccccccCCcHHHHHHHHHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhh
Confidence 3211 0000 0 1135689999999999999999999999999999999
Q ss_pred hhcCCCCCeEEEEeCCCCcceeecCCCCCCcCCccccCHhhHHHHhcccCCC---CCcEEEEecC
Q 002521 596 EASITINDIVFVVDCGKAKETTYDALNNTPCLLPSWISQASARQRRGRAGRV---QPGQCYHLYP 657 (913)
Q Consensus 596 e~GIdIp~v~~VId~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~---~~G~c~~L~t 657 (913)
+.|+|+|.-++|+ +++.| ||.. ...|++..+|.|+.|||||. ..|.++.+.+
T Consensus 481 s~GiNmPartvv~-~~l~K---~dG~------~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~ 535 (1041)
T COG4581 481 AIGINMPARTVVF-TSLSK---FDGN------GHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEP 535 (1041)
T ss_pred hhhcCCcccceee-eeeEE---ecCC------ceeecChhHHHHhhhhhccccccccceEEEecC
Confidence 9999999776665 55555 5532 35688999999999999998 5688888843
No 82
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.93 E-value=7.8e-26 Score=241.62 Aligned_cols=326 Identities=20% Similarity=0.179 Sum_probs=221.1
Q ss_pred hhhhHHhhhcCCCcHHHHHHHHHHHHcCCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHH
Q 002521 238 EGNKMLDFRKSLPSFKEKERLLQAIARNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSER 317 (913)
Q Consensus 238 ~~~~l~~~r~~lP~~~~q~~il~~i~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~r 317 (913)
.++.+.+.-.+.|... |...++.|+++++++-.|-||||||.++.+++++.+.... ....+.+++.|+|+||.|..+.
T Consensus 32 v~raI~kkg~~~ptpi-qRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s-~~g~RalilsptreLa~qtlkv 109 (529)
T KOG0337|consen 32 VLRAIHKKGFNTPTPI-QRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHS-QTGLRALILSPTRELALQTLKV 109 (529)
T ss_pred HHHHHHHhhcCCCCch-hcccccceeeccccceeeecCCcchhhHHHHHHHHHhhcc-ccccceeeccCcHHHHHHHHHH
Confidence 4455555556666543 5667888899999999999999999999999999886544 2334555555999999999888
Q ss_pred HHHHhCCCcc----cEeeeEEecc--ccCCCCceEEEEecHHHHHHHhcC-CCCCCceEEEeccccccCcchHHHHHHHH
Q 002521 318 VSAERGEPLG----ETVGYKVRLE--GMKGKNTHLLFCTSGILLRRLLSD-HNLNGVTHVFVDEIHERGMNEDFLLIVLK 390 (913)
Q Consensus 318 v~~~~~~~~g----~~vGy~v~~e--~~~~~~~~Ivv~T~g~Ll~~l~~~-~~L~~~s~IIIDEaHer~~~~d~ll~llk 390 (913)
++. +|.-.+ ..+|+..-.+ ...+.+++|+++|||+++.....- ..|+.+.+||+||++ |-+...|...+-+
T Consensus 110 vkd-lgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVfdEad-rlfemgfqeql~e 187 (529)
T KOG0337|consen 110 VKD-LGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEAD-RLFEMGFQEQLHE 187 (529)
T ss_pred HHH-hccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehheeccccceeeeeehhhh-HHHhhhhHHHHHH
Confidence 765 322111 1233221111 223467899999999998765433 378999999999999 3233323333333
Q ss_pred HhCccCccceEEEeccccCHH--HHHhhhCCCCeeccCCccccceeeehhhHHhhhcccccccccccchhhhhHHHHhhh
Q 002521 391 DLLPRRRDLRLILMSATLNAE--LFSNYFGGAPTIHIPGFTYPVQAHFLEDVLEMTGYKLTSLNQVDDYGQEKLWKTQRQ 468 (913)
Q Consensus 391 ~ll~~~~~~kiIlmSATl~~~--~~~~yf~~~~~i~i~g~~~pv~~~yl~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (913)
.+-....+.|.++||||++.. .|.+ .|...|+-+.. + +
T Consensus 188 ~l~rl~~~~QTllfSatlp~~lv~fak----------aGl~~p~lVRl-d-v---------------------------- 227 (529)
T KOG0337|consen 188 ILSRLPESRQTLLFSATLPRDLVDFAK----------AGLVPPVLVRL-D-V---------------------------- 227 (529)
T ss_pred HHHhCCCcceEEEEeccCchhhHHHHH----------ccCCCCceEEe-e-h----------------------------
Confidence 333344456999999999865 2322 23333433331 0 0
Q ss_pred hchhhhhhhHHHHHHHHHhhccccccchhhhhhhccccccccchhhHHHHHHHHhhhc-CCCcEEEEcCChHHHHHHHHH
Q 002521 469 LLPRKRKNQITALVEDALHKSNFENYSSRARDSLASWTADCIGFNLIEAVLCHICRKE-CPGAVLVFMTGWEDISCLRDQ 547 (913)
Q Consensus 469 ~~~~~~~~~i~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~li~~ll~~i~~~~-~~g~iLVF~~~~~~i~~l~~~ 547 (913)
.+.+.+.++... ..+....+...|.+++... .+..++||+++..+++.+...
T Consensus 228 ------etkise~lk~~f---------------------~~~~~a~K~aaLl~il~~~~~~~~t~vf~~tk~hve~~~~l 280 (529)
T KOG0337|consen 228 ------ETKISELLKVRF---------------------FRVRKAEKEAALLSILGGRIKDKQTIVFVATKHHVEYVRGL 280 (529)
T ss_pred ------hhhcchhhhhhe---------------------eeeccHHHHHHHHHHHhccccccceeEEecccchHHHHHHH
Confidence 000000000000 0011112223344444332 345799999999999999999
Q ss_pred HHcCCCCCCCCCeEEEEecCCCChHHHHHHhccCCCCccEEEEecchhhhcCCCCCeEEEEeCCCCcceeecCCCCCCcC
Q 002521 548 LKSHPLLGDPNRVLLLTCHGSMPTSEQKFIFEKAPPNIRKIVLATNMAEASITINDIVFVVDCGKAKETTYDALNNTPCL 627 (913)
Q Consensus 548 L~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~g~~kVLVATniae~GIdIp~v~~VId~g~~k~~~yd~~~~~~~l 627 (913)
|... ++.+..++|+|.+..|..-+..|..++..++|.|++|++|+|||-..-||++++|. .-..
T Consensus 281 l~~~-------g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldnvinyd~p~--------~~kl- 344 (529)
T KOG0337|consen 281 LRDF-------GGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDNVINYDFPP--------DDKL- 344 (529)
T ss_pred HHhc-------CCCccccccccChHhhhhccccccCCccceEEEehhhhccCCCccccccccccCCC--------CCce-
Confidence 9986 77788899999999999999999999999999999999999999999999966543 3233
Q ss_pred CccccCHhhHHHHhcccCCC-CCcEEEEecChh
Q 002521 628 LPSWISQASARQRRGRAGRV-QPGQCYHLYPRC 659 (913)
Q Consensus 628 ~~~~iSka~~~QR~GRAGR~-~~G~c~~L~t~~ 659 (913)
|.||+||+.|. +.|..|.+....
T Consensus 345 ---------FvhRVgr~aragrtg~aYs~V~~~ 368 (529)
T KOG0337|consen 345 ---------FVHRVGRVARAGRTGRAYSLVAST 368 (529)
T ss_pred ---------EEEEecchhhccccceEEEEEecc
Confidence 34999999998 589999997654
No 83
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.93 E-value=3.7e-24 Score=252.20 Aligned_cols=433 Identities=19% Similarity=0.196 Sum_probs=267.3
Q ss_pred HHHHHHHHHHHHc-CCeEEEEcCCCchHHhHHHHHHHHHHHHhCC------CCceEEEEcchhHHHHHHHHHHHHHHhCC
Q 002521 252 FKEKERLLQAIAR-NQVIVISGETGCGKTTQLPQYILESEIESGR------GAFCNIICTQPRRISAMAVSERVSAERGE 324 (913)
Q Consensus 252 ~~~q~~il~~i~~-~~~vII~apTGSGKTt~~~~~ile~~~~~~~------~~~~~Ilv~qPrr~La~qva~rv~~~~~~ 324 (913)
...|-.+..+... ..++++|||||+|||-.+.+-+++.+-.+.+ -...+|+++.|.++|+..+...+++.+ .
T Consensus 311 NrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLvqE~VgsfSkRl-a 389 (1674)
T KOG0951|consen 311 NRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQEMVGSFSKRL-A 389 (1674)
T ss_pred hHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHHHHHHHHHHhhc-c
Confidence 4456666665544 5699999999999999999999987744322 123489999999999999988776643 2
Q ss_pred CcccEeeeEEeccc---cCCCCceEEEEecHHHHHHHhcC---CCCCCceEEEecccc----ccCcchHHHHH-HHHHhC
Q 002521 325 PLGETVGYKVRLEG---MKGKNTHLLFCTSGILLRRLLSD---HNLNGVTHVFVDEIH----ERGMNEDFLLI-VLKDLL 393 (913)
Q Consensus 325 ~~g~~vGy~v~~e~---~~~~~~~Ivv~T~g~Ll~~l~~~---~~L~~~s~IIIDEaH----er~~~~d~ll~-llk~ll 393 (913)
.+|..|+=..+... ..-..++|+||||+..--.-..+ ...+-++++||||+| +||.-.+-.-. ..++.-
T Consensus 390 ~~GI~V~ElTgD~~l~~~qieeTqVIV~TPEK~DiITRk~gdraY~qlvrLlIIDEIHLLhDdRGpvLESIVaRt~r~se 469 (1674)
T KOG0951|consen 390 PLGITVLELTGDSQLGKEQIEETQVIVTTPEKWDIITRKSGDRAYEQLVRLLIIDEIHLLHDDRGPVLESIVARTFRRSE 469 (1674)
T ss_pred ccCcEEEEecccccchhhhhhcceeEEeccchhhhhhcccCchhHHHHHHHHhhhhhhhcccccchHHHHHHHHHHHHhh
Confidence 23444432222111 11256899999998652211221 144568999999998 47654433322 233333
Q ss_pred ccCccceEEEecccc-CHHHHHhhhCCCC--eecc--CCccccceeeehhhHHhhhcccccccccccchhhhhHHHHhhh
Q 002521 394 PRRRDLRLILMSATL-NAELFSNYFGGAP--TIHI--PGFTYPVQAHFLEDVLEMTGYKLTSLNQVDDYGQEKLWKTQRQ 468 (913)
Q Consensus 394 ~~~~~~kiIlmSATl-~~~~~~~yf~~~~--~i~i--~g~~~pv~~~yl~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (913)
....+.+++++|||+ |-++.+.|++-.+ ++.. .-|+.|++..|+.- .
T Consensus 470 s~~e~~RlVGLSATLPNy~DV~~Fl~v~~~glf~fd~syRpvPL~qq~Igi-------~--------------------- 521 (1674)
T KOG0951|consen 470 STEEGSRLVGLSATLPNYEDVASFLRVDPEGLFYFDSSYRPVPLKQQYIGI-------T--------------------- 521 (1674)
T ss_pred hcccCceeeeecccCCchhhhHHHhccCcccccccCcccCcCCccceEecc-------c---------------------
Confidence 345578999999999 6677888776322 2222 33445555555320 0
Q ss_pred hchhhhhhhHHHHHHHHHhhccccccchhhhhhhccccccccchhhHHHHHHHHhhhcCCCcEEEEcCChHHHHHHHHHH
Q 002521 469 LLPRKRKNQITALVEDALHKSNFENYSSRARDSLASWTADCIGFNLIEAVLCHICRKECPGAVLVFMTGWEDISCLRDQL 548 (913)
Q Consensus 469 ~~~~~~~~~i~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~li~~ll~~i~~~~~~g~iLVF~~~~~~i~~l~~~L 548 (913)
.+..... -+++. +.....+......+++|||+.++++..+.++.+
T Consensus 522 -----ek~~~~~--~qamN----------------------------e~~yeKVm~~agk~qVLVFVHsRkET~ktA~aI 566 (1674)
T KOG0951|consen 522 -----EKKPLKR--FQAMN----------------------------EACYEKVLEHAGKNQVLVFVHSRKETAKTARAI 566 (1674)
T ss_pred -----cCCchHH--HHHHH----------------------------HHHHHHHHHhCCCCcEEEEEEechHHHHHHHHH
Confidence 0000000 00000 011222333445688999999999998888887
Q ss_pred HcC------------------------------CCCCCCCCeEEEEecCCCChHHHHHHhccCCCCccEEEEecchhhhc
Q 002521 549 KSH------------------------------PLLGDPNRVLLLTCHGSMPTSEQKFIFEKAPPNIRKIVLATNMAEAS 598 (913)
Q Consensus 549 ~~~------------------------------~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~g~~kVLVATniae~G 598 (913)
+.. +.+.+...+.++.||+||+..+|..+.+.|..|.++|+|+|.++++|
T Consensus 567 Rd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLpygfaIHhAGl~R~dR~~~EdLf~~g~iqvlvstatlawg 646 (1674)
T KOG0951|consen 567 RDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLPYGFAIHHAGLNRKDRELVEDLFADGHIQVLVSTATLAWG 646 (1674)
T ss_pred HHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhhccceeeccCCCcchHHHHHHHHhcCceeEEEeehhhhhh
Confidence 731 11222335678999999999999999999999999999999999999
Q ss_pred CCCCCeEEEEeCCCCcceeecCCCCCCcCCccccCHhhHHHHhcccCCCC-----CcEEEEecChhhHH-hhhhCCCC-c
Q 002521 599 ITINDIVFVVDCGKAKETTYDALNNTPCLLPSWISQASARQRRGRAGRVQ-----PGQCYHLYPRCVYE-AFAEYQLP-E 671 (913)
Q Consensus 599 IdIp~v~~VId~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~~-----~G~c~~L~t~~~~~-~l~~~~~p-E 671 (913)
+|+|+-+++|- ....||+..+.- ..+|.-+-+||.|||||.+ .|..+.=+++-.|. .+...++| |
T Consensus 647 vnlpahtViik----gtqvy~pekg~w----~elsp~dv~qmlgragrp~~D~~gegiiit~~se~qyyls~mn~qLpie 718 (1674)
T KOG0951|consen 647 VNLPAHTVIIK----GTQVYDPEKGRW----TELSPLDVMQMLGRAGRPQYDTCGEGIIITDHSELQYYLSLMNQQLPIE 718 (1674)
T ss_pred cCCCcceEEec----CccccCcccCcc----ccCCHHHHHHHHhhcCCCccCcCCceeeccCchHhhhhHHhhhhcCCCh
Confidence 99999888884 345588887753 4568999999999999983 34444444444432 22222222 2
Q ss_pred cccc-ChhhHHHH-HhhcCCCCHH---HHHH------hccCCCc-----------------hHHHHHHHHHHHHcCCCCC
Q 002521 672 LLRT-PLNSLCLQ-IKSLQVGSIG---EFLS------AALQPPE-----------------PLAVQNAVDFLKRIGALDE 723 (913)
Q Consensus 672 i~r~-~L~~~~L~-lk~l~~~~~~---~fl~------~~l~pP~-----------------~~~i~~al~~L~~~gald~ 723 (913)
-+.. .|.+ ||. =+.+|+.+.. ++|. +.+..|. ..-++.|.-.|.+.|.|--
T Consensus 719 sq~~~rl~d-~lnaeiv~Gv~~~~d~~~wl~yTylyvRm~~~p~ly~~~~~~~d~~le~~r~~lvhsa~~ll~~~~li~y 797 (1674)
T KOG0951|consen 719 SQFVSRLAD-CLNAEIVLGVRSARDAVDWLGYTYLYVRMVRNPTLYGVSPEASDRLLEQRRADLVHSAATLLDKAGLIKY 797 (1674)
T ss_pred HHHHHHhhh-hhhhhhhcchhhHHHHHhhhcceeeEEeeccCchhccCCcccchHHHHHHHhhhHHHHHhhHhhcCcccc
Confidence 1111 1111 111 1223332222 1110 1111111 1457888999999998853
Q ss_pred C-----CCcccccccccccCCChHHHHHHHHhhhccChH
Q 002521 724 K-----ENLTNLGKFLSMLPVDPKLGKMLVMGAIFRCFD 757 (913)
Q Consensus 724 ~-----~~lT~lG~~ls~lpl~p~~~k~ll~~~~~~cl~ 757 (913)
+ -..|.+|+..+.+.+.-......-....-.|.+
T Consensus 798 d~~s~~~~~telg~ias~yyi~~~s~~~yn~~L~~~~~~ 836 (1674)
T KOG0951|consen 798 DRKSGAIQATELGRIASSYYITHGSMATYNELLKETMSE 836 (1674)
T ss_pred ccccCcccchhhccccceeeeecchHHHHHhhhhhhhcc
Confidence 3 268999999999999776655444443334443
No 84
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.93 E-value=1.3e-24 Score=257.23 Aligned_cols=323 Identities=16% Similarity=0.126 Sum_probs=192.1
Q ss_pred hcCCCcHHHHHHHHHHHHcC---CeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHHHHHh
Q 002521 246 RKSLPSFKEKERLLQAIARN---QVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVSAER 322 (913)
Q Consensus 246 r~~lP~~~~q~~il~~i~~~---~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv~~~~ 322 (913)
+....+.+||++.+..+..+ +..+|++|||+|||.++...+.. + +..+.||| |+..|+.|+.+.+.+..
T Consensus 251 ~~~~~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~~-l-----~k~tLILv--ps~~Lv~QW~~ef~~~~ 322 (732)
T TIGR00603 251 KPTTQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAACT-V-----KKSCLVLC--TSAVSVEQWKQQFKMWS 322 (732)
T ss_pred ccCCCcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHHH-h-----CCCEEEEe--CcHHHHHHHHHHHHHhc
Confidence 34556789999999988743 36788899999999988765533 1 23455666 99999999999998765
Q ss_pred CCCcccEeeeEEeccccCCCCceEEEEecHHHHHHHhcC-------CCC--CCceEEEeccccccCcchHHHHHHHHHhC
Q 002521 323 GEPLGETVGYKVRLEGMKGKNTHLLFCTSGILLRRLLSD-------HNL--NGVTHVFVDEIHERGMNEDFLLIVLKDLL 393 (913)
Q Consensus 323 ~~~~g~~vGy~v~~e~~~~~~~~Ivv~T~g~Ll~~l~~~-------~~L--~~~s~IIIDEaHer~~~~d~ll~llk~ll 393 (913)
....+....|.............|+|+|.+++....... ..+ ..+++||+||||.-. ... ...++..+
T Consensus 323 ~l~~~~I~~~tg~~k~~~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lp-A~~-fr~il~~l- 399 (732)
T TIGR00603 323 TIDDSQICRFTSDAKERFHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVP-AAM-FRRVLTIV- 399 (732)
T ss_pred CCCCceEEEEecCcccccccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEcccccc-HHH-HHHHHHhc-
Confidence 433222222221111111224689999999875422111 122 468999999999542 222 22222222
Q ss_pred ccCccceEEEeccccCHH-----HHHhhhCCCCeecc-------CCccccceee--ehhhHHhhhcccccccccccchhh
Q 002521 394 PRRRDLRLILMSATLNAE-----LFSNYFGGAPTIHI-------PGFTYPVQAH--FLEDVLEMTGYKLTSLNQVDDYGQ 459 (913)
Q Consensus 394 ~~~~~~kiIlmSATl~~~-----~~~~yf~~~~~i~i-------~g~~~pv~~~--yl~di~~~~~~~~~~~~~~~~~~~ 459 (913)
.....+++|||+..+ .+..++| +.+... .|..-|+... +.+ ...
T Consensus 400 ---~a~~RLGLTATP~ReD~~~~~L~~LiG-P~vye~~~~eLi~~G~LA~~~~~ev~v~------------------~t~ 457 (732)
T TIGR00603 400 ---QAHCKLGLTATLVREDDKITDLNFLIG-PKLYEANWMELQKKGFIANVQCAEVWCP------------------MTP 457 (732)
T ss_pred ---CcCcEEEEeecCcccCCchhhhhhhcC-CeeeecCHHHHHhCCccccceEEEEEec------------------CCH
Confidence 223579999999322 2223333 232222 1222121110 000 000
Q ss_pred hhHHHHhhhhchhhhhhhHHHHHHHHHhhccccccchhhhhhhccccccccchhhHHHHHHHHhhh--cCCCcEEEEcCC
Q 002521 460 EKLWKTQRQLLPRKRKNQITALVEDALHKSNFENYSSRARDSLASWTADCIGFNLIEAVLCHICRK--ECPGAVLVFMTG 537 (913)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~i~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~li~~ll~~i~~~--~~~g~iLVF~~~ 537 (913)
+. ...++ .... .....+..++ .. +...+..+... ..+.++||||..
T Consensus 458 ~~----------------~~~yl----~~~~------~~k~~l~~~n-----p~-K~~~~~~Li~~he~~g~kiLVF~~~ 505 (732)
T TIGR00603 458 EF----------------YREYL----RENS------RKRMLLYVMN-----PN-KFRACQFLIRFHEQRGDKIIVFSDN 505 (732)
T ss_pred HH----------------HHHHH----Hhcc------hhhhHHhhhC-----hH-HHHHHHHHHHHHhhcCCeEEEEeCC
Confidence 00 00000 0000 0000000000 01 11112222221 256799999999
Q ss_pred hHHHHHHHHHHHcCCCCCCCCCeEEEEecCCCChHHHHHHhccCCCC-ccEEEEecchhhhcCCCCCeEEEEeCCCCcce
Q 002521 538 WEDISCLRDQLKSHPLLGDPNRVLLLTCHGSMPTSEQKFIFEKAPPN-IRKIVLATNMAEASITINDIVFVVDCGKAKET 616 (913)
Q Consensus 538 ~~~i~~l~~~L~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~g-~~kVLVATniae~GIdIp~v~~VId~g~~k~~ 616 (913)
...+..+++.|. +..+||+++..+|..+++.|+.| .+++||+|+++.+|||+|++++||....+
T Consensus 506 ~~~l~~~a~~L~------------~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~SkVgdeGIDlP~a~vvI~~s~~--- 570 (732)
T TIGR00603 506 VFALKEYAIKLG------------KPFIYGPTSQQERMQILQNFQHNPKVNTIFLSKVGDTSIDLPEANVLIQISSH--- 570 (732)
T ss_pred HHHHHHHHHHcC------------CceEECCCCHHHHHHHHHHHHhCCCccEEEEecccccccCCCCCCEEEEeCCC---
Confidence 999888888773 23479999999999999999865 78999999999999999999999983322
Q ss_pred eecCCCCCCcCCccccCHhhHHHHhcccCCCCCc-EE-------EEecChhhHH
Q 002521 617 TYDALNNTPCLLPSWISQASARQRRGRAGRVQPG-QC-------YHLYPRCVYE 662 (913)
Q Consensus 617 ~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~~~G-~c-------~~L~t~~~~~ 662 (913)
. -|+.+|.||+||++|.++| .+ |.|.+++..+
T Consensus 571 -----~---------gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~E 610 (732)
T TIGR00603 571 -----Y---------GSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQE 610 (732)
T ss_pred -----C---------CCHHHHHHHhcccccCCCCCccccccceEEEEecCCchH
Confidence 1 1778999999999999543 33 8887765433
No 85
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.92 E-value=3.2e-24 Score=269.72 Aligned_cols=293 Identities=19% Similarity=0.224 Sum_probs=184.3
Q ss_pred hhcCchhhhHHhhhcCCCcHHHHHHHHHHHHcCCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHH
Q 002521 233 WQESPEGNKMLDFRKSLPSFKEKERLLQAIARNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAM 312 (913)
Q Consensus 233 ~~~~~~~~~l~~~r~~lP~~~~q~~il~~i~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~ 312 (913)
|+...++.+.+........++.|..+++.+..+++++++||||||||+ +.+++...+. .++. +++++.|||+||.
T Consensus 61 ~~~~~~f~~~f~~~~g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~--~~g~--~vLIL~PTreLa~ 135 (1171)
T TIGR01054 61 DEELKEFEEFFKKAVGSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLA--KKGK--RCYIILPTTLLVI 135 (1171)
T ss_pred HHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHH--hcCC--eEEEEeCHHHHHH
Confidence 334445566665556667788999999999999999999999999997 4344444332 2333 4555559999999
Q ss_pred HHHHHHHHHhCC-Cccc-Eee-eEEe---------ccccCCCCceEEEEecHHHHHHHhcCCCCCCceEEEecccccc--
Q 002521 313 AVSERVSAERGE-PLGE-TVG-YKVR---------LEGMKGKNTHLLFCTSGILLRRLLSDHNLNGVTHVFVDEIHER-- 378 (913)
Q Consensus 313 qva~rv~~~~~~-~~g~-~vG-y~v~---------~e~~~~~~~~Ivv~T~g~Ll~~l~~~~~L~~~s~IIIDEaHer-- 378 (913)
|+++.+...... .+.. .++ |... .+.....+++|+|+||+.|.+.+..-. .++++|||||||+.
T Consensus 136 Qi~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~--~~~~~iVvDEaD~~L~ 213 (1171)
T TIGR01054 136 QVAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELG--PKFDFIFVDDVDALLK 213 (1171)
T ss_pred HHHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhc--CCCCEEEEeChHhhhh
Confidence 999999775421 1111 121 1111 111223458999999999998775421 18999999999953
Q ss_pred ------------CcchHHHHHHHHH------------------hCcc-Cccc--eEEEecccc-CHHHHHhhhCCCCeec
Q 002521 379 ------------GMNEDFLLIVLKD------------------LLPR-RRDL--RLILMSATL-NAELFSNYFGGAPTIH 424 (913)
Q Consensus 379 ------------~~~~d~ll~llk~------------------ll~~-~~~~--kiIlmSATl-~~~~~~~yf~~~~~i~ 424 (913)
|+..+.+...+.. .+.. .... .++++|||+ +...-..+|...-.+.
T Consensus 214 ~~k~vd~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~~l~r~ll~~~ 293 (1171)
T TIGR01054 214 ASKNVDKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRAKLFRELLGFE 293 (1171)
T ss_pred ccccHHHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHHHHcccccceE
Confidence 2332222111110 0111 1222 367789995 3322122333221122
Q ss_pred cCCccc---cceeeehhhHHhhhcccccccccccchhhhhHHHHhhhhchhhhhhhHHHHHHHHHhhccccccchhhhhh
Q 002521 425 IPGFTY---PVQAHFLEDVLEMTGYKLTSLNQVDDYGQEKLWKTQRQLLPRKRKNQITALVEDALHKSNFENYSSRARDS 501 (913)
Q Consensus 425 i~g~~~---pv~~~yl~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~~l~~~~~~~~~~~~~~~ 501 (913)
+..... .+...|..
T Consensus 294 v~~~~~~~r~I~~~~~~--------------------------------------------------------------- 310 (1171)
T TIGR01054 294 VGGGSDTLRNVVDVYVE--------------------------------------------------------------- 310 (1171)
T ss_pred ecCccccccceEEEEEe---------------------------------------------------------------
Confidence 211100 01111100
Q ss_pred hccccccccchhhHHHHHHHHhhhcCCCcEEEEcCCh---HHHHHHHHHHHcCCCCCCCCCeEEEEecCCCChHHHHHHh
Q 002521 502 LASWTADCIGFNLIEAVLCHICRKECPGAVLVFMTGW---EDISCLRDQLKSHPLLGDPNRVLLLTCHGSMPTSEQKFIF 578 (913)
Q Consensus 502 l~~~~~~~~~~~li~~ll~~i~~~~~~g~iLVF~~~~---~~i~~l~~~L~~~~~~~~~~~~~v~~lHs~l~~~er~~v~ 578 (913)
... .. ..+..+.+.. +..+||||++. +.++.+++.|... ++.+..+||+++ +.++
T Consensus 311 -------~~~--~~-~~L~~ll~~l-~~~~IVFv~t~~~~~~a~~l~~~L~~~-------g~~a~~lhg~~~----~~~l 368 (1171)
T TIGR01054 311 -------DED--LK-ETLLEIVKKL-GTGGIVYVSIDYGKEKAEEIAEFLENH-------GVKAVAYHATKP----KEDY 368 (1171)
T ss_pred -------ccc--HH-HHHHHHHHHc-CCCEEEEEeccccHHHHHHHHHHHHhC-------CceEEEEeCCCC----HHHH
Confidence 000 00 0122222222 35689999999 9999999999986 788999999997 2688
Q ss_pred ccCCCCccEEEEe----cchhhhcCCCCC-eEEEEeCCCCccee
Q 002521 579 EKAPPNIRKIVLA----TNMAEASITIND-IVFVVDCGKAKETT 617 (913)
Q Consensus 579 ~~f~~g~~kVLVA----Tniae~GIdIp~-v~~VId~g~~k~~~ 617 (913)
+.|++|+++|||| ||++++|||||+ |+|||++|.|+.+.
T Consensus 369 ~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P~~~~ 412 (1171)
T TIGR01054 369 EKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVPKFKV 412 (1171)
T ss_pred HHHHcCCCCEEEEeccccCcccccCCCCccccEEEEECCCCEEE
Confidence 9999999999999 599999999999 79999999998643
No 86
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.92 E-value=3.1e-24 Score=245.70 Aligned_cols=303 Identities=20% Similarity=0.272 Sum_probs=215.7
Q ss_pred cCCCcHHHHHHHHHHHHcC------CeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHHHH
Q 002521 247 KSLPSFKEKERLLQAIARN------QVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVSA 320 (913)
Q Consensus 247 ~~lP~~~~q~~il~~i~~~------~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv~~ 320 (913)
-++.++..|+.++.-|... .+=++.|..|||||.++.+.++..+ ..|.++..+. ||-+||.|.+..+.+
T Consensus 259 LPF~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai---~~G~Q~ALMA--PTEILA~QH~~~~~~ 333 (677)
T COG1200 259 LPFKLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAI---EAGYQAALMA--PTEILAEQHYESLRK 333 (677)
T ss_pred CCCCccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHH---HcCCeeEEec--cHHHHHHHHHHHHHH
Confidence 3445678888888887653 3568999999999999999988766 3445555555 999999999999987
Q ss_pred HhCCCcccEeeeEEe----------ccccCCCCceEEEEecHHHHHHHhcCCCCCCceEEEeccccccCcchHHHHHHHH
Q 002521 321 ERGEPLGETVGYKVR----------LEGMKGKNTHLLFCTSGILLRRLLSDHNLNGVTHVFVDEIHERGMNEDFLLIVLK 390 (913)
Q Consensus 321 ~~~~~~g~~vGy~v~----------~e~~~~~~~~Ivv~T~g~Ll~~l~~~~~L~~~s~IIIDEaHer~~~~d~ll~llk 390 (913)
.+.. +|..|++-+. .+...++..+|+|+|... ++.+-.+.++.+|||||=|..|+..-..+.
T Consensus 334 ~l~~-~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHAL----iQd~V~F~~LgLVIiDEQHRFGV~QR~~L~--- 405 (677)
T COG1200 334 WLEP-LGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHAL----IQDKVEFHNLGLVIIDEQHRFGVHQRLALR--- 405 (677)
T ss_pred Hhhh-cCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchh----hhcceeecceeEEEEeccccccHHHHHHHH---
Confidence 6542 3334444332 234456779999999843 334448999999999999988877643322
Q ss_pred HhCccCc-cceEEEecccc-CHHHHHhhhCCCCeecc---CCccccceeeehhhHHhhhcccccccccccchhhhhHHHH
Q 002521 391 DLLPRRR-DLRLILMSATL-NAELFSNYFGGAPTIHI---PGFTYPVQAHFLEDVLEMTGYKLTSLNQVDDYGQEKLWKT 465 (913)
Q Consensus 391 ~ll~~~~-~~kiIlmSATl-~~~~~~~yf~~~~~i~i---~g~~~pv~~~yl~di~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (913)
.+.. ...++.||||+ +....-..|++-.+-.| |.-.-|+....+.+
T Consensus 406 ---~KG~~~Ph~LvMTATPIPRTLAlt~fgDldvS~IdElP~GRkpI~T~~i~~-------------------------- 456 (677)
T COG1200 406 ---EKGEQNPHVLVMTATPIPRTLALTAFGDLDVSIIDELPPGRKPITTVVIPH-------------------------- 456 (677)
T ss_pred ---HhCCCCCcEEEEeCCCchHHHHHHHhccccchhhccCCCCCCceEEEEecc--------------------------
Confidence 1222 45799999998 66666678886554443 43445666665432
Q ss_pred hhhhchhhhhhhHHHHHHHHHhhccccccchhhhhhhccccccccchhhHHHHHHHHhhhcCCCcEEEEcCChHHH----
Q 002521 466 QRQLLPRKRKNQITALVEDALHKSNFENYSSRARDSLASWTADCIGFNLIEAVLCHICRKECPGAVLVFMTGWEDI---- 541 (913)
Q Consensus 466 ~~~~~~~~~~~~i~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~li~~ll~~i~~~~~~g~iLVF~~~~~~i---- 541 (913)
.....+.+.+...+. .+..+.|.||-.++-
T Consensus 457 -------~~~~~v~e~i~~ei~---------------------------------------~GrQaY~VcPLIeESE~l~ 490 (677)
T COG1200 457 -------ERRPEVYERIREEIA---------------------------------------KGRQAYVVCPLIEESEKLE 490 (677)
T ss_pred -------ccHHHHHHHHHHHHH---------------------------------------cCCEEEEEeccccccccch
Confidence 111122222222221 355678888866554
Q ss_pred ----HHHHHHHHcCCCCCCCCCeEEEEecCCCChHHHHHHhccCCCCccEEEEecchhhhcCCCCCeEEEEeCCCCccee
Q 002521 542 ----SCLRDQLKSHPLLGDPNRVLLLTCHGSMPTSEQKFIFEKAPPNIRKIVLATNMAEASITINDIVFVVDCGKAKETT 617 (913)
Q Consensus 542 ----~~l~~~L~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~g~~kVLVATniae~GIdIp~v~~VId~g~~k~~~ 617 (913)
..+++.|... .+++.+..+||.|+.+|++.|++.|++|+.+|||||.+.|-|||+|+.++.|.
T Consensus 491 l~~a~~~~~~L~~~-----~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTVIEVGVdVPnATvMVI-------- 557 (677)
T COG1200 491 LQAAEELYEELKSF-----LPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATTVIEVGVDVPNATVMVI-------- 557 (677)
T ss_pred hhhHHHHHHHHHHH-----cccceeEEEecCCChHHHHHHHHHHHcCCCcEEEEeeEEEecccCCCCeEEEE--------
Confidence 4556666632 23677999999999999999999999999999999999999999999988776
Q ss_pred ecCCCCCCcCCccccCHhhHHHHhcccCCC-CCcEEEEecChh
Q 002521 618 YDALNNTPCLLPSWISQASARQRRGRAGRV-QPGQCYHLYPRC 659 (913)
Q Consensus 618 yd~~~~~~~l~~~~iSka~~~QR~GRAGR~-~~G~c~~L~t~~ 659 (913)
+|+.+ ..-++..|-+||+||. .++.|+.+|...
T Consensus 558 e~AER---------FGLaQLHQLRGRVGRG~~qSyC~Ll~~~~ 591 (677)
T COG1200 558 ENAER---------FGLAQLHQLRGRVGRGDLQSYCVLLYKPP 591 (677)
T ss_pred echhh---------hhHHHHHHhccccCCCCcceEEEEEeCCC
Confidence 44332 2456788999999999 789999998754
No 87
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.92 E-value=7.8e-24 Score=255.70 Aligned_cols=362 Identities=16% Similarity=0.153 Sum_probs=211.5
Q ss_pred cCCCcHHHHHHHHHHHHc---CCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHHHHHhC
Q 002521 247 KSLPSFKEKERLLQAIAR---NQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVSAERG 323 (913)
Q Consensus 247 ~~lP~~~~q~~il~~i~~---~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv~~~~~ 323 (913)
....++..|+++++.+.. ++++++.|+||||||.++..++.+.+. .|. .++++.|+++|+.|+++++.+.+|
T Consensus 141 ~~~~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~---~g~--~vLvLvPt~~L~~Q~~~~l~~~fg 215 (679)
T PRK05580 141 EPPTLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLA---QGK--QALVLVPEIALTPQMLARFRARFG 215 (679)
T ss_pred CCCCCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHH---cCC--eEEEEeCcHHHHHHHHHHHHHHhC
Confidence 344567889999999987 478999999999999999887766542 233 455555999999999999998777
Q ss_pred CCcccEeeeEEe------ccccCCCCceEEEEecHHHHHHHhcCCCCCCceEEEeccccccCcchHHH-----HHHHHHh
Q 002521 324 EPLGETVGYKVR------LEGMKGKNTHLLFCTSGILLRRLLSDHNLNGVTHVFVDEIHERGMNEDFL-----LIVLKDL 392 (913)
Q Consensus 324 ~~~g~~vGy~v~------~e~~~~~~~~Ivv~T~g~Ll~~l~~~~~L~~~s~IIIDEaHer~~~~d~l-----l~llk~l 392 (913)
..+....|.... +.....+..+|+|+|++.++ ..+.++++|||||+|+.+...+-- ..+ ...
T Consensus 216 ~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~------~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~v-a~~ 288 (679)
T PRK05580 216 APVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF------LPFKNLGLIIVDEEHDSSYKQQEGPRYHARDL-AVV 288 (679)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc------ccccCCCEEEEECCCccccccCcCCCCcHHHH-HHH
Confidence 554433332111 11123356799999998775 257889999999999655432210 010 111
Q ss_pred CccCccceEEEeccccCHHHHHhhhCC-CCeeccCCcc----ccceeeehhhHHhhhcccccccccccchhhhhHHHHhh
Q 002521 393 LPRRRDLRLILMSATLNAELFSNYFGG-APTIHIPGFT----YPVQAHFLEDVLEMTGYKLTSLNQVDDYGQEKLWKTQR 467 (913)
Q Consensus 393 l~~~~~~kiIlmSATl~~~~~~~yf~~-~~~i~i~g~~----~pv~~~yl~di~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (913)
.....+.++|++|||++.+.+.....+ ...+.++.+. .| .+..++--....+
T Consensus 289 ra~~~~~~~il~SATps~~s~~~~~~g~~~~~~l~~r~~~~~~p-~v~~id~~~~~~~---------------------- 345 (679)
T PRK05580 289 RAKLENIPVVLGSATPSLESLANAQQGRYRLLRLTKRAGGARLP-EVEIIDMRELLRG---------------------- 345 (679)
T ss_pred HhhccCCCEEEEcCCCCHHHHHHHhccceeEEEeccccccCCCC-eEEEEechhhhhh----------------------
Confidence 223456799999999988876654332 2333333322 22 1111110000000
Q ss_pred hhchhhhhhhHHHHHHHHHhhc-------cccccchh-----hhhhhcc--ccccccchhhHHHHHHHHhhhcCC-----
Q 002521 468 QLLPRKRKNQITALVEDALHKS-------NFENYSSR-----ARDSLAS--WTADCIGFNLIEAVLCHICRKECP----- 528 (913)
Q Consensus 468 ~~~~~~~~~~i~~~v~~~l~~~-------~~~~~~~~-----~~~~l~~--~~~~~~~~~li~~ll~~i~~~~~~----- 528 (913)
.........+.+.+++.+... +..++... +.....+ ......-......+.||.|.....
T Consensus 346 -~~~~~ls~~l~~~i~~~l~~g~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~C 424 (679)
T PRK05580 346 -ENGSFLSPPLLEAIKQRLERGEQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKAC 424 (679)
T ss_pred -cccCCCCHHHHHHHHHHHHcCCeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCC
Confidence 000000111222333333221 11111110 0000000 000000001122345666543321
Q ss_pred --CcEEEEcCChHHHHHHHHHHHcCCCCCCCCCeEEEEecCCCC--hHHHHHHhccCCCCccEEEEecchhhhcCCCCCe
Q 002521 529 --GAVLVFMTGWEDISCLRDQLKSHPLLGDPNRVLLLTCHGSMP--TSEQKFIFEKAPPNIRKIVLATNMAEASITINDI 604 (913)
Q Consensus 529 --g~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lHs~l~--~~er~~v~~~f~~g~~kVLVATniae~GIdIp~v 604 (913)
-.-..|......++++++.|.... ++..+..+|++++ ..+++++++.|++|+.+|||+|+++++|+|+|+|
T Consensus 425 p~Cg~~~l~~~g~G~e~~~e~l~~~f-----p~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v 499 (679)
T PRK05580 425 PECGSTDLVPVGPGTERLEEELAELF-----PEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNV 499 (679)
T ss_pred CCCcCCeeEEeeccHHHHHHHHHHhC-----CCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCc
Confidence 001224444556777888887752 2567889999987 4678999999999999999999999999999999
Q ss_pred EEEEeCCCCcceeecCCCCCCcCCccccCHhhHHHHhcccCCC-CCcEEEEe
Q 002521 605 VFVVDCGKAKETTYDALNNTPCLLPSWISQASARQRRGRAGRV-QPGQCYHL 655 (913)
Q Consensus 605 ~~VId~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~-~~G~c~~L 655 (913)
++|+..+ .|...+.+.|....-....+.|++|||||. .+|.|+..
T Consensus 500 ~lV~il~------aD~~l~~pdfra~Er~~~~l~q~~GRagR~~~~g~viiq 545 (679)
T PRK05580 500 TLVGVLD------ADLGLFSPDFRASERTFQLLTQVAGRAGRAEKPGEVLIQ 545 (679)
T ss_pred CEEEEEc------CchhccCCccchHHHHHHHHHHHHhhccCCCCCCEEEEE
Confidence 8874211 333444444443333456889999999996 78988854
No 88
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.91 E-value=4.3e-23 Score=244.44 Aligned_cols=106 Identities=21% Similarity=0.220 Sum_probs=92.0
Q ss_pred cCCCcEEEEcCChHHHHHHHHHHHcCCCCCCCCCeEEEEecCCCChHHHHHHhccCCCCccEEEEecchhhhcCCCC---
Q 002521 526 ECPGAVLVFMTGWEDISCLRDQLKSHPLLGDPNRVLLLTCHGSMPTSEQKFIFEKAPPNIRKIVLATNMAEASITIN--- 602 (913)
Q Consensus 526 ~~~g~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~g~~kVLVATniae~GIdIp--- 602 (913)
..+.++||||++++.++.+...|... ++.+..+||.+...++..+...++.| .|+||||+|++|+|||
T Consensus 422 ~~~~pvLIft~s~~~se~ls~~L~~~-------gi~~~~L~a~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~ 492 (762)
T TIGR03714 422 ETGQPVLLITGSVEMSEIYSELLLRE-------GIPHNLLNAQNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGK 492 (762)
T ss_pred hCCCCEEEEECcHHHHHHHHHHHHHC-------CCCEEEecCCChHHHHHHHHHcCCCC--eEEEEccccccccCCCCCc
Confidence 45678999999999999999999986 77888999999999999898888877 7999999999999999
Q ss_pred ------CeEEEEeCCCCcceeecCCCCCCcCCccccCHhhHHHHhcccCCC-CCcEEEEecChh
Q 002521 603 ------DIVFVVDCGKAKETTYDALNNTPCLLPSWISQASARQRRGRAGRV-QPGQCYHLYPRC 659 (913)
Q Consensus 603 ------~v~~VId~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~-~~G~c~~L~t~~ 659 (913)
++.+|+++..|. .+.. .||+|||||. .+|.++.+++.+
T Consensus 493 ~v~~~GGL~vIit~~~ps------------------~rid-~qr~GRtGRqG~~G~s~~~is~e 537 (762)
T TIGR03714 493 GVAELGGLAVIGTERMEN------------------SRVD-LQLRGRSGRQGDPGSSQFFVSLE 537 (762)
T ss_pred cccccCCeEEEEecCCCC------------------cHHH-HHhhhcccCCCCceeEEEEEccc
Confidence 999999955543 2223 7999999999 799999998764
No 89
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.91 E-value=1.6e-23 Score=223.62 Aligned_cols=319 Identities=18% Similarity=0.176 Sum_probs=200.9
Q ss_pred HHHHHHHHHHcCCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHHHHHhCCCc---ccEe
Q 002521 254 EKERLLQAIARNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVSAERGEPL---GETV 330 (913)
Q Consensus 254 ~q~~il~~i~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv~~~~~~~~---g~~v 330 (913)
|..++.-++..+++|.|++|||+|||+++.++.|-. .| .-||+.|..+|.....+.+... ..++ ....
T Consensus 25 QE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~-----~g---ITIV~SPLiALIkDQiDHL~~L-KVp~~SLNSKl 95 (641)
T KOG0352|consen 25 QEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH-----GG---ITIVISPLIALIKDQIDHLKRL-KVPCESLNSKL 95 (641)
T ss_pred HHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh-----CC---eEEEehHHHHHHHHHHHHHHhc-CCchhHhcchh
Confidence 344555556788999999999999999998887642 12 5566679999987776666442 1111 1111
Q ss_pred eeEEec----c-ccCCCCceEEEEecHHHHH-----HHhcCCCCCCceEEEeccccc-----cCcchHHH-HHHHHHhCc
Q 002521 331 GYKVRL----E-GMKGKNTHLLFCTSGILLR-----RLLSDHNLNGVTHVFVDEIHE-----RGMNEDFL-LIVLKDLLP 394 (913)
Q Consensus 331 Gy~v~~----e-~~~~~~~~Ivv~T~g~Ll~-----~l~~~~~L~~~s~IIIDEaHe-----r~~~~d~l-l~llk~ll~ 394 (913)
.-..|. + .....++.++|.||+.... .|..-..-+.++++||||||. .++..|+| ++-| ..
T Consensus 96 St~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVDEAHCVSQWGHDFRPDYL~LG~L---RS 172 (641)
T KOG0352|consen 96 STVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVDEAHCVSQWGHDFRPDYLTLGSL---RS 172 (641)
T ss_pred hHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEechhhhHhhhccccCcchhhhhhH---Hh
Confidence 111110 0 1122567999999965422 221112335678999999995 45666665 3333 34
Q ss_pred cCccceEEEeccccCHHHHHhhhC----CCCeeccCCccccceeeehhhHHhhhcccccccccccchhhhhHHHHhhhhc
Q 002521 395 RRRDLRLILMSATLNAELFSNYFG----GAPTIHIPGFTYPVQAHFLEDVLEMTGYKLTSLNQVDDYGQEKLWKTQRQLL 470 (913)
Q Consensus 395 ~~~~~kiIlmSATl~~~~~~~yf~----~~~~i~i~g~~~pv~~~yl~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (913)
..+++..+.++||.+++.-.+.|. ..|+-....-.|.-..+|-...-+. .
T Consensus 173 ~~~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~FR~NLFYD~~~K~~--------------------------I 226 (641)
T KOG0352|consen 173 VCPGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTPTFRDNLFYDNHMKSF--------------------------I 226 (641)
T ss_pred hCCCCceEEeecccChhHHHHHHHHHhhcCcHHhccCcchhhhhhHHHHHHHH--------------------------h
Confidence 556778999999998764333221 2222211111111111221000000 0
Q ss_pred hhhhhhhHHHHHHHHHhhccccccchhhhhhhccccccccchhhHHHHHHHHhhhcCCCcEEEEcCChHHHHHHHHHHHc
Q 002521 471 PRKRKNQITALVEDALHKSNFENYSSRARDSLASWTADCIGFNLIEAVLCHICRKECPGAVLVFMTGWEDISCLRDQLKS 550 (913)
Q Consensus 471 ~~~~~~~i~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~li~~ll~~i~~~~~~g~iLVF~~~~~~i~~l~~~L~~ 550 (913)
......+.++....+-... . ..-..+...|..||+|.|+++++.++-.|..
T Consensus 227 -~D~~~~LaDF~~~~LG~~~------------------~----------~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~ 277 (641)
T KOG0352|consen 227 -TDCLTVLADFSSSNLGKHE------------------K----------ASQNKKTFTGCGIVYCRTRNECEQVAIMLEI 277 (641)
T ss_pred -hhHhHhHHHHHHHhcCChh------------------h----------hhcCCCCcCcceEEEeccHHHHHHHHHHhhh
Confidence 0000001111111111000 0 0000112357899999999999999999987
Q ss_pred CCCCCCCCCeEEEEecCCCChHHHHHHhccCCCCccEEEEecchhhhcCCCCCeEEEEeCCCCcceeecCCCCCCcCCcc
Q 002521 551 HPLLGDPNRVLLLTCHGSMPTSEQKFIFEKAPPNIRKIVLATNMAEASITINDIVFVVDCGKAKETTYDALNNTPCLLPS 630 (913)
Q Consensus 551 ~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~g~~kVLVATniae~GIdIp~v~~VId~g~~k~~~yd~~~~~~~l~~~ 630 (913)
. ++....+|+||...||.+|.+.+-+|+..||+||+.+.+|+|-|+|++||+...++
T Consensus 278 ~-------Gi~A~AYHAGLK~~ERTeVQe~WM~~~~PvI~AT~SFGMGVDKp~VRFViHW~~~q---------------- 334 (641)
T KOG0352|consen 278 A-------GIPAMAYHAGLKKKERTEVQEKWMNNEIPVIAATVSFGMGVDKPDVRFVIHWSPSQ---------------- 334 (641)
T ss_pred c-------CcchHHHhcccccchhHHHHHHHhcCCCCEEEEEeccccccCCcceeEEEecCchh----------------
Confidence 6 88899999999999999999999999999999999999999999999999944443
Q ss_pred ccCHhhHHHHhcccCCC-CCcEEEEecChhhHHhh
Q 002521 631 WISQASARQRRGRAGRV-QPGQCYHLYPRCVYEAF 664 (913)
Q Consensus 631 ~iSka~~~QR~GRAGR~-~~G~c~~L~t~~~~~~l 664 (913)
+.+-|.|-.|||||. .+..|-..|++++-+.+
T Consensus 335 --n~AgYYQESGRAGRDGk~SyCRLYYsR~D~~~i 367 (641)
T KOG0352|consen 335 --NLAGYYQESGRAGRDGKRSYCRLYYSRQDKNAL 367 (641)
T ss_pred --hhHHHHHhccccccCCCccceeeeecccchHHH
Confidence 556788999999999 67888888888776543
No 90
>PRK09694 helicase Cas3; Provisional
Probab=99.91 E-value=7.8e-23 Score=248.76 Aligned_cols=325 Identities=22% Similarity=0.212 Sum_probs=185.4
Q ss_pred CCCcHHHHHHHHHHHHcCCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHHHHHh----C
Q 002521 248 SLPSFKEKERLLQAIARNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVSAER----G 323 (913)
Q Consensus 248 ~lP~~~~q~~il~~i~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv~~~~----~ 323 (913)
....++.|+.+......+..+||.||||+|||.++..++.. +...+ ....|++..||+++++++++|+.+.. +
T Consensus 284 ~~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~-l~~~~--~~~gi~~aLPT~Atan~m~~Rl~~~~~~~f~ 360 (878)
T PRK09694 284 GYQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWR-LIDQG--LADSIIFALPTQATANAMLSRLEALASKLFP 360 (878)
T ss_pred CCCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHH-HHHhC--CCCeEEEECcHHHHHHHHHHHHHHHHHHhcC
Confidence 34567888877655455778999999999999998776654 33222 23467777799999999999997522 2
Q ss_pred -CCcccEeeeEE---ecc---------------------c-----cCCCCceEEEEecHHHHHHHhcCC--CCCC----c
Q 002521 324 -EPLGETVGYKV---RLE---------------------G-----MKGKNTHLLFCTSGILLRRLLSDH--NLNG----V 367 (913)
Q Consensus 324 -~~~g~~vGy~v---~~e---------------------~-----~~~~~~~Ivv~T~g~Ll~~l~~~~--~L~~----~ 367 (913)
..+....|... .+. . ...--.+|+|||...++......+ .+.. -
T Consensus 361 ~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~La~ 440 (878)
T PRK09694 361 SPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFGLGR 440 (878)
T ss_pred CCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHhhcc
Confidence 11222222110 000 0 000126899999977775443322 2222 3
Q ss_pred eEEEeccccccCcchH-HHHHHHHHhCccCccceEEEeccccCHHHHHhhh---CCCCeeccCCccccceeeehhhHHhh
Q 002521 368 THVFVDEIHERGMNED-FLLIVLKDLLPRRRDLRLILMSATLNAELFSNYF---GGAPTIHIPGFTYPVQAHFLEDVLEM 443 (913)
Q Consensus 368 s~IIIDEaHer~~~~d-~ll~llk~ll~~~~~~kiIlmSATl~~~~~~~yf---~~~~~i~i~g~~~pv~~~yl~di~~~ 443 (913)
++|||||+|--+..+. ++..+++.+.. .+.++|+||||++...-..++ ++...+ .....||.-...-.. ..
T Consensus 441 svvIiDEVHAyD~ym~~lL~~~L~~l~~--~g~~vIllSATLP~~~r~~L~~a~~~~~~~-~~~~~YPlvt~~~~~--~~ 515 (878)
T PRK09694 441 SVLIVDEVHAYDAYMYGLLEAVLKAQAQ--AGGSVILLSATLPATLKQKLLDTYGGHDPV-ELSSAYPLITWRGVN--GA 515 (878)
T ss_pred CeEEEechhhCCHHHHHHHHHHHHHHHh--cCCcEEEEeCCCCHHHHHHHHHHhcccccc-ccccccccccccccc--cc
Confidence 5899999996554433 33334444323 345799999999875433332 221111 011123321100000 00
Q ss_pred hcccccccccccchhhhhHHHHhhhhchhhhhhhHHHHHHHHHhhccccccchhhhhhhcccc-ccccchhhHHHHHHHH
Q 002521 444 TGYKLTSLNQVDDYGQEKLWKTQRQLLPRKRKNQITALVEDALHKSNFENYSSRARDSLASWT-ADCIGFNLIEAVLCHI 522 (913)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~~l~~~~~~~~~~~~~~~l~~~~-~~~~~~~li~~ll~~i 522 (913)
....... ..+ ... .... + .+.... ..... ...++..+
T Consensus 516 ~~~~~~~-------~~~-------~~~-~~~~----------v--------------~v~~~~~~~~~~---~~~~l~~i 553 (878)
T PRK09694 516 QRFDLSA-------HPE-------QLP-ARFT----------I--------------QLEPICLADMLP---DLTLLQRM 553 (878)
T ss_pred eeeeccc-------ccc-------ccC-cceE----------E--------------EEEeeccccccC---HHHHHHHH
Confidence 0000000 000 000 0000 0 000000 00000 01112222
Q ss_pred hhh-cCCCcEEEEcCChHHHHHHHHHHHcCCCCCCCCCeEEEEecCCCChHHH----HHHhccC-CCCc---cEEEEecc
Q 002521 523 CRK-ECPGAVLVFMTGWEDISCLRDQLKSHPLLGDPNRVLLLTCHGSMPTSEQ----KFIFEKA-PPNI---RKIVLATN 593 (913)
Q Consensus 523 ~~~-~~~g~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lHs~l~~~er----~~v~~~f-~~g~---~kVLVATn 593 (913)
... ..++++||||||++.++.+++.|+... + ....+..+||.++..+| +++++.| ++|+ .+|||||+
T Consensus 554 ~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~--~--~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQ 629 (878)
T PRK09694 554 IAAANAGAQVCLICNLVDDAQKLYQRLKELN--N--TQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQ 629 (878)
T ss_pred HHHHhcCCEEEEEECCHHHHHHHHHHHHhhC--C--CCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECc
Confidence 221 346789999999999999999998641 1 13568999999999999 4567777 6676 47999999
Q ss_pred hhhhcCCCCCeEEEEeCCCCcceeecCCCCCCcCCccccCHhhHHHHhcccCCC
Q 002521 594 MAEASITINDIVFVVDCGKAKETTYDALNNTPCLLPSWISQASARQRRGRAGRV 647 (913)
Q Consensus 594 iae~GIdIp~v~~VId~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~ 647 (913)
++|+|||| +++++|..-. ...+++||+||+||.
T Consensus 630 ViE~GLDI-d~DvlItdla--------------------PidsLiQRaGR~~R~ 662 (878)
T PRK09694 630 VVEQSLDL-DFDWLITQLC--------------------PVDLLFQRLGRLHRH 662 (878)
T ss_pred chhheeec-CCCeEEECCC--------------------CHHHHHHHHhccCCC
Confidence 99999999 5788875211 345888999999998
No 91
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.91 E-value=6.2e-23 Score=236.82 Aligned_cols=328 Identities=17% Similarity=0.146 Sum_probs=196.4
Q ss_pred hhcCCCcHHHHHHHHHHHHc----CCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHHHH
Q 002521 245 FRKSLPSFKEKERLLQAIAR----NQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVSA 320 (913)
Q Consensus 245 ~r~~lP~~~~q~~il~~i~~----~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv~~ 320 (913)
.........+|+++++++.. ++..+|++|||+|||..+...+.+. +.. ++|++||++|+.|+++++..
T Consensus 31 ~~~~~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~------~~~--~Lvlv~~~~L~~Qw~~~~~~ 102 (442)
T COG1061 31 VAFEFELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAEL------KRS--TLVLVPTKELLDQWAEALKK 102 (442)
T ss_pred cccCCCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHh------cCC--EEEEECcHHHHHHHHHHHHH
Confidence 44566688999999999988 8899999999999999888776542 122 44444999999999988888
Q ss_pred HhCCCcccEeeeEEeccccCCCCceEEEEecHHHHHHH-hcCCCCCCceEEEeccccccCcchHHHHHHHHHhCccCccc
Q 002521 321 ERGEPLGETVGYKVRLEGMKGKNTHLLFCTSGILLRRL-LSDHNLNGVTHVFVDEIHERGMNEDFLLIVLKDLLPRRRDL 399 (913)
Q Consensus 321 ~~~~~~g~~vGy~v~~e~~~~~~~~Ivv~T~g~Ll~~l-~~~~~L~~~s~IIIDEaHer~~~~d~ll~llk~ll~~~~~~ 399 (913)
..+.. ..+|.-......... ..|+|+|.+.+.+.. ......+.+++||+||||+.+..... .++..+ ...
T Consensus 103 ~~~~~--~~~g~~~~~~~~~~~-~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~~~~--~~~~~~----~~~ 173 (442)
T COG1061 103 FLLLN--DEIGIYGGGEKELEP-AKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAPSYR--RILELL----SAA 173 (442)
T ss_pred hcCCc--cccceecCceeccCC-CcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCcHHHH--HHHHhh----hcc
Confidence 76653 122211111111111 479999999998862 22224447999999999976543211 111122 222
Q ss_pred e-EEEeccccCHH---HHHhhhC--CCCeeccC-------CccccceeeehhhHHhhhcccccccccccchhhhhHHHHh
Q 002521 400 R-LILMSATLNAE---LFSNYFG--GAPTIHIP-------GFTYPVQAHFLEDVLEMTGYKLTSLNQVDDYGQEKLWKTQ 466 (913)
Q Consensus 400 k-iIlmSATl~~~---~~~~yf~--~~~~i~i~-------g~~~pv~~~yl~di~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (913)
. +++||||+... ....+|. +..+..++ |..-|......... .... ....+...
T Consensus 174 ~~~LGLTATp~R~D~~~~~~l~~~~g~~vy~~~~~~li~~g~Lap~~~~~i~~~-------------~t~~-~~~~~~~~ 239 (442)
T COG1061 174 YPRLGLTATPEREDGGRIGDLFDLIGPIVYEVSLKELIDEGYLAPYKYVEIKVT-------------LTED-EEREYAKE 239 (442)
T ss_pred cceeeeccCceeecCCchhHHHHhcCCeEeecCHHHHHhCCCccceEEEEEEec-------------cchH-HHHHhhhh
Confidence 3 89999997432 2222222 22222222 22222221111100 0000 00000000
Q ss_pred hhhchhhhhhhHHHHHHHHHhhccccccchhhhhhhccccccccchhhHHHHHHHHhhhcCCCcEEEEcCChHHHHHHHH
Q 002521 467 RQLLPRKRKNQITALVEDALHKSNFENYSSRARDSLASWTADCIGFNLIEAVLCHICRKECPGAVLVFMTGWEDISCLRD 546 (913)
Q Consensus 467 ~~~~~~~~~~~i~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~li~~ll~~i~~~~~~g~iLVF~~~~~~i~~l~~ 546 (913)
...................... ........+..+-.++.....+.+++||+....++..++.
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~ 301 (442)
T COG1061 240 SARFRELLRARGTLRAENEARR------------------IAIASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAK 301 (442)
T ss_pred hhhhhhhhhhhhhhhHHHHHHH------------------HhhccHHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHH
Confidence 0000000000000000000000 0000001111122222222246789999999999999999
Q ss_pred HHHcCCCCCCCCCeEEEEecCCCChHHHHHHhccCCCCccEEEEecchhhhcCCCCCeEEEEeCCCCcceeecCCCCCCc
Q 002521 547 QLKSHPLLGDPNRVLLLTCHGSMPTSEQKFIFEKAPPNIRKIVLATNMAEASITINDIVFVVDCGKAKETTYDALNNTPC 626 (913)
Q Consensus 547 ~L~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~g~~kVLVATniae~GIdIp~v~~VId~g~~k~~~yd~~~~~~~ 626 (913)
.+... +. +..+.+..+..+|..+++.|+.|.+++|+++.++.+|+|+|++.++|......
T Consensus 302 ~~~~~-------~~-~~~it~~t~~~eR~~il~~fr~g~~~~lv~~~vl~EGvDiP~~~~~i~~~~t~------------ 361 (442)
T COG1061 302 LFLAP-------GI-VEAITGETPKEEREAILERFRTGGIKVLVTVKVLDEGVDIPDADVLIILRPTG------------ 361 (442)
T ss_pred HhcCC-------Cc-eEEEECCCCHHHHHHHHHHHHcCCCCEEEEeeeccceecCCCCcEEEEeCCCC------------
Confidence 99874 34 77899999999999999999999999999999999999999999998754443
Q ss_pred CCccccCHhhHHHHhcccCCC
Q 002521 627 LLPSWISQASARQRRGRAGRV 647 (913)
Q Consensus 627 l~~~~iSka~~~QR~GRAGR~ 647 (913)
|+..|.||+||.-|.
T Consensus 362 ------S~~~~~Q~lGR~LR~ 376 (442)
T COG1061 362 ------SRRLFIQRLGRGLRP 376 (442)
T ss_pred ------cHHHHHHHhhhhccC
Confidence 788999999999996
No 92
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.91 E-value=4.3e-24 Score=249.33 Aligned_cols=332 Identities=17% Similarity=0.188 Sum_probs=185.8
Q ss_pred EEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHHHHHhCCCcccEeeeEEe------ccccCCC
Q 002521 269 VISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVSAERGEPLGETVGYKVR------LEGMKGK 342 (913)
Q Consensus 269 II~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv~~~~~~~~g~~vGy~v~------~e~~~~~ 342 (913)
++.|+||||||.++...+.+.+ . .|. .++++.|+++|+.|+++++.+.++..+....|.... +.....+
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l-~--~g~--~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g 75 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVL-A--LGK--SVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNG 75 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHH-H--cCC--eEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcC
Confidence 4689999999999877765543 2 233 455555999999999999998776543322221111 1122335
Q ss_pred CceEEEEecHHHHHHHhcCCCCCCceEEEeccccccCcchHHHHH----HHHHhCccCccceEEEeccccCHHHHHhhhC
Q 002521 343 NTHLLFCTSGILLRRLLSDHNLNGVTHVFVDEIHERGMNEDFLLI----VLKDLLPRRRDLRLILMSATLNAELFSNYFG 418 (913)
Q Consensus 343 ~~~Ivv~T~g~Ll~~l~~~~~L~~~s~IIIDEaHer~~~~d~ll~----llk~ll~~~~~~kiIlmSATl~~~~~~~yf~ 418 (913)
..+|+|+|+..++. .+.++++|||||+|+-++..+-... -+........+.++|++|||++.+.+.....
T Consensus 76 ~~~IVVGTrsalf~------p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~~~~~~vil~SATPsles~~~~~~ 149 (505)
T TIGR00595 76 EILVVIGTRSALFL------PFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAKKFNCPVVLGSATPSLESYHNAKQ 149 (505)
T ss_pred CCCEEECChHHHcC------cccCCCEEEEECCCccccccccCCCCcHHHHHHHHHHhcCCCEEEEeCCCCHHHHHHHhc
Confidence 67999999987752 5788999999999965433221000 0011122335678999999998887766544
Q ss_pred CC-CeeccCC----ccccceeeehhhHHhhhcccccccccccchhhhhHHHHhhhhchhhhhhhHHHHHHHHHhhc----
Q 002521 419 GA-PTIHIPG----FTYPVQAHFLEDVLEMTGYKLTSLNQVDDYGQEKLWKTQRQLLPRKRKNQITALVEDALHKS---- 489 (913)
Q Consensus 419 ~~-~~i~i~g----~~~pv~~~yl~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~~l~~~---- 489 (913)
+. ..+.++. ...| .+..++ . . .+ .........+...+.+.+...
T Consensus 150 g~~~~~~l~~r~~~~~~p-~v~vid-~------~-----------~~--------~~~~~ls~~l~~~i~~~l~~g~qvL 202 (505)
T TIGR00595 150 KAYRLLVLTRRVSGRKPP-EVKLID-M------R-----------KE--------PRQSFLSPELITAIEQTLAAGEQSI 202 (505)
T ss_pred CCeEEeechhhhcCCCCC-eEEEEe-c------c-----------cc--------cccCCccHHHHHHHHHHHHcCCcEE
Confidence 32 2222221 1111 111110 0 0 00 000000111223333333221
Q ss_pred ---cccccchh-----hhhhhcc--ccccccchhhHHHHHHHHhhhcCC---------C-cEEEEcCChHHHHHHHHHHH
Q 002521 490 ---NFENYSSR-----ARDSLAS--WTADCIGFNLIEAVLCHICRKECP---------G-AVLVFMTGWEDISCLRDQLK 549 (913)
Q Consensus 490 ---~~~~~~~~-----~~~~l~~--~~~~~~~~~li~~ll~~i~~~~~~---------g-~iLVF~~~~~~i~~l~~~L~ 549 (913)
+..+|.+. +.....+ ......-......+.||.|..... + .+..+-.| ++++.+.|.
T Consensus 203 vflnrrGya~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~G---te~~~e~l~ 279 (505)
T TIGR00595 203 LFLNRRGYSKNLLCRSCGYILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYG---TEQVEEELA 279 (505)
T ss_pred EEEeCCcCCCeeEhhhCcCccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeeccc---HHHHHHHHH
Confidence 11111110 0000000 000000001112334555543211 1 12222222 456666666
Q ss_pred cCCCCCCCCCeEEEEecCCCChHHH--HHHhccCCCCccEEEEecchhhhcCCCCCeEEE--EeCCCCcceeecCCCCCC
Q 002521 550 SHPLLGDPNRVLLLTCHGSMPTSEQ--KFIFEKAPPNIRKIVLATNMAEASITINDIVFV--VDCGKAKETTYDALNNTP 625 (913)
Q Consensus 550 ~~~~~~~~~~~~v~~lHs~l~~~er--~~v~~~f~~g~~kVLVATniae~GIdIp~v~~V--Id~g~~k~~~yd~~~~~~ 625 (913)
... ++..+..+|++++..++ +.+++.|++|+.+|||+|++++.|+|+|+|+.| +| +|...+.+
T Consensus 280 ~~f-----p~~~v~~~d~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~--------aD~~l~~p 346 (505)
T TIGR00595 280 KLF-----PGARIARIDSDTTSRKGAHEALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLD--------ADSGLHSP 346 (505)
T ss_pred hhC-----CCCcEEEEecccccCccHHHHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEc--------CcccccCc
Confidence 541 25678999999987765 889999999999999999999999999999877 46 44444444
Q ss_pred cCCccccCHhhHHHHhcccCCC-CCcEEEE
Q 002521 626 CLLPSWISQASARQRRGRAGRV-QPGQCYH 654 (913)
Q Consensus 626 ~l~~~~iSka~~~QR~GRAGR~-~~G~c~~ 654 (913)
.|....-....+.|++|||||. .+|.++.
T Consensus 347 d~ra~E~~~~ll~q~~GRagR~~~~g~vii 376 (505)
T TIGR00595 347 DFRAAERGFQLLTQVAGRAGRAEDPGQVII 376 (505)
T ss_pred ccchHHHHHHHHHHHHhccCCCCCCCEEEE
Confidence 4433333456789999999997 7788874
No 93
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.91 E-value=2.4e-22 Score=235.57 Aligned_cols=106 Identities=22% Similarity=0.206 Sum_probs=89.6
Q ss_pred CCcEEEEcCChHHHHHHHHHHHcCCCCCCCCCeEEEEecCCCChHHHHHHhccCCCCccEEEEecchhhhcCCCC---Ce
Q 002521 528 PGAVLVFMTGWEDISCLRDQLKSHPLLGDPNRVLLLTCHGSMPTSEQKFIFEKAPPNIRKIVLATNMAEASITIN---DI 604 (913)
Q Consensus 528 ~g~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~g~~kVLVATniae~GIdIp---~v 604 (913)
+.++||||++.+.++.++..|... ++.+..+||.+...++..+... .+...|+||||+|++|+||+ +|
T Consensus 473 ~~pvLIft~t~~~se~L~~~L~~~-------gi~~~~Lhg~~~~rE~~ii~~a--g~~g~VlVATdmAgRGtDI~l~~~V 543 (656)
T PRK12898 473 GRPVLVGTRSVAASERLSALLREA-------GLPHQVLNAKQDAEEAAIVARA--GQRGRITVATNMAGRGTDIKLEPGV 543 (656)
T ss_pred CCCEEEEeCcHHHHHHHHHHHHHC-------CCCEEEeeCCcHHHHHHHHHHc--CCCCcEEEEccchhcccCcCCccch
Confidence 568999999999999999999986 7889999999776665555444 44456999999999999999 77
Q ss_pred E-----EEEeCCCCcceeecCCCCCCcCCccccCHhhHHHHhcccCCC-CCcEEEEecChhh
Q 002521 605 V-----FVVDCGKAKETTYDALNNTPCLLPSWISQASARQRRGRAGRV-QPGQCYHLYPRCV 660 (913)
Q Consensus 605 ~-----~VId~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~-~~G~c~~L~t~~~ 660 (913)
. +||++++|. |...|.||+||+||. .+|.|+.+++.++
T Consensus 544 ~~~GGLhVI~~d~P~------------------s~r~y~hr~GRTGRqG~~G~s~~~is~eD 587 (656)
T PRK12898 544 AARGGLHVILTERHD------------------SARIDRQLAGRCGRQGDPGSYEAILSLED 587 (656)
T ss_pred hhcCCCEEEEcCCCC------------------CHHHHHHhcccccCCCCCeEEEEEechhH
Confidence 6 999977776 566888999999999 7999999998643
No 94
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.91 E-value=1.8e-22 Score=211.34 Aligned_cols=286 Identities=19% Similarity=0.256 Sum_probs=193.8
Q ss_pred HHHHHHHHcCCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHHHHHhC-CCcccEeeeEE
Q 002521 256 ERLLQAIARNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVSAERG-EPLGETVGYKV 334 (913)
Q Consensus 256 ~~il~~i~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv~~~~~-~~~g~~vGy~v 334 (913)
.+++..+.+.+..+|.|-||+|||..+.+.|-..+ +. | .+|.+..||...+.+++.|++..+. +.+....|
T Consensus 107 ~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al-~~--G--~~vciASPRvDVclEl~~Rlk~aF~~~~I~~Lyg--- 178 (441)
T COG4098 107 NQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQAL-NQ--G--GRVCIASPRVDVCLELYPRLKQAFSNCDIDLLYG--- 178 (441)
T ss_pred HHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHH-hc--C--CeEEEecCcccchHHHHHHHHHhhccCCeeeEec---
Confidence 35677788899999999999999988887765544 22 2 3677788999999999999998765 43333332
Q ss_pred eccccCCCCceEEEEecHHHHHHHhcCCCCCCceEEEeccccccCcchHHHHHH-HHHhCccCccceEEEeccccCHHHH
Q 002521 335 RLEGMKGKNTHLLFCTSGILLRRLLSDHNLNGVTHVFVDEIHERGMNEDFLLIV-LKDLLPRRRDLRLILMSATLNAELF 413 (913)
Q Consensus 335 ~~e~~~~~~~~Ivv~T~g~Ll~~l~~~~~L~~~s~IIIDEaHer~~~~d~ll~l-lk~ll~~~~~~kiIlmSATl~~~~~ 413 (913)
++..-..++++|+|+-.|++.- +.++++||||+|...+..|-.+.+ ++...+ +.--+|.||||++.+.-
T Consensus 179 --~S~~~fr~plvVaTtHQLlrFk------~aFD~liIDEVDAFP~~~d~~L~~Av~~ark--~~g~~IylTATp~k~l~ 248 (441)
T COG4098 179 --DSDSYFRAPLVVATTHQLLRFK------QAFDLLIIDEVDAFPFSDDQSLQYAVKKARK--KEGATIYLTATPTKKLE 248 (441)
T ss_pred --CCchhccccEEEEehHHHHHHH------hhccEEEEeccccccccCCHHHHHHHHHhhc--ccCceEEEecCChHHHH
Confidence 2222233789999999999865 568999999999876666655544 333333 23358999999987765
Q ss_pred HhhhCC-CCeeccCCc----cccceeee-hhhHHhhhcccccccccccchhhhhHHHHhhhhchhhhhhhHHHHHHHHHh
Q 002521 414 SNYFGG-APTIHIPGF----TYPVQAHF-LEDVLEMTGYKLTSLNQVDDYGQEKLWKTQRQLLPRKRKNQITALVEDALH 487 (913)
Q Consensus 414 ~~yf~~-~~~i~i~g~----~~pv~~~y-l~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~~l~ 487 (913)
.+...+ ...+.+|.| +.|+..+. ..+ |+ +.+...
T Consensus 249 r~~~~g~~~~~klp~RfH~~pLpvPkf~w~~~-----------------------~~--k~l~r~--------------- 288 (441)
T COG4098 249 RKILKGNLRILKLPARFHGKPLPVPKFVWIGN-----------------------WN--KKLQRN--------------- 288 (441)
T ss_pred HHhhhCCeeEeecchhhcCCCCCCCceEEecc-----------------------HH--HHhhhc---------------
Confidence 555443 334555533 33443321 110 00 000000
Q ss_pred hccccccchhhhhhhccccccccchhhHHHHHHHHhhh-cCCCcEEEEcCChHHHHHHHHHHHcCCCCCCCCCeEEEEec
Q 002521 488 KSNFENYSSRARDSLASWTADCIGFNLIEAVLCHICRK-ECPGAVLVFMTGWEDISCLRDQLKSHPLLGDPNRVLLLTCH 566 (913)
Q Consensus 488 ~~~~~~~~~~~~~~l~~~~~~~~~~~li~~ll~~i~~~-~~~g~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lH 566 (913)
.+.. .++..|-+. ..+.++|||+|+.+..+.++..|+... +...+...|
T Consensus 289 ---------------------kl~~----kl~~~lekq~~~~~P~liF~p~I~~~eq~a~~lk~~~-----~~~~i~~Vh 338 (441)
T COG4098 289 ---------------------KLPL----KLKRWLEKQRKTGRPVLIFFPEIETMEQVAAALKKKL-----PKETIASVH 338 (441)
T ss_pred ---------------------cCCH----HHHHHHHHHHhcCCcEEEEecchHHHHHHHHHHHhhC-----Cccceeeee
Confidence 0000 111112111 235689999999999999999996541 245677888
Q ss_pred CCCChHHHHHHhccCCCCccEEEEecchhhhcCCCCCeEEEEeCCCCcceeecCCCCCCcCCccccCHhhHHHHhcccCC
Q 002521 567 GSMPTSEQKFIFEKAPPNIRKIVLATNMAEASITINDIVFVVDCGKAKETTYDALNNTPCLLPSWISQASARQRRGRAGR 646 (913)
Q Consensus 567 s~l~~~er~~v~~~f~~g~~kVLVATniae~GIdIp~v~~VId~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR 646 (913)
|.- ..|.+..+.|++|+.++|++|.|+|+|+|+|+|+++|- ++...+ .|.++.+|.+||+||
T Consensus 339 s~d--~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vl---------gaeh~v-------fTesaLVQIaGRvGR 400 (441)
T COG4098 339 SED--QHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVL---------GAEHRV-------FTESALVQIAGRVGR 400 (441)
T ss_pred ccC--ccHHHHHHHHHcCceEEEEEeehhhcccccccceEEEe---------cCCccc-------ccHHHHHHHhhhccC
Confidence 874 56888889999999999999999999999999966552 111111 288899999999999
Q ss_pred C
Q 002521 647 V 647 (913)
Q Consensus 647 ~ 647 (913)
.
T Consensus 401 s 401 (441)
T COG4098 401 S 401 (441)
T ss_pred C
Confidence 8
No 95
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.91 E-value=5.5e-23 Score=249.18 Aligned_cols=307 Identities=17% Similarity=0.180 Sum_probs=209.6
Q ss_pred HHHHHHHHHHHcCCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHHHHHhCCCcccEeee
Q 002521 253 KEKERLLQAIARNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVSAERGEPLGETVGY 332 (913)
Q Consensus 253 ~~q~~il~~i~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv~~~~~~~~g~~vGy 332 (913)
+-|.+++.+++.|++++|.+|||.||++++.+|.+-. + ...+|+.|...|...+...+.. .+......-+-
T Consensus 267 ~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l~------~--gitvVISPL~SLm~DQv~~L~~-~~I~a~~L~s~ 337 (941)
T KOG0351|consen 267 PNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALLL------G--GVTVVISPLISLMQDQVTHLSK-KGIPACFLSSI 337 (941)
T ss_pred hhHHHHHHHHHcCCceEEEeecCCceeeEeecccccc------C--CceEEeccHHHHHHHHHHhhhh-cCcceeecccc
Confidence 5578888899999999999999999998887766421 1 1567777999998876666622 22211111111
Q ss_pred EEe------ccccCCC--CceEEEEecHHHHHHHh---cCCCCCC---ceEEEeccccc-----cCcchHHHHHHHHHhC
Q 002521 333 KVR------LEGMKGK--NTHLLFCTSGILLRRLL---SDHNLNG---VTHVFVDEIHE-----RGMNEDFLLIVLKDLL 393 (913)
Q Consensus 333 ~v~------~e~~~~~--~~~Ivv~T~g~Ll~~l~---~~~~L~~---~s~IIIDEaHe-----r~~~~d~ll~llk~ll 393 (913)
+.. +.....+ ..+|+|.||+.+...-. ....|.. +.++||||||. +++..++... ..+.
T Consensus 338 q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqWgHdFRp~Yk~l--~~l~ 415 (941)
T KOG0351|consen 338 QTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQWGHDFRPSYKRL--GLLR 415 (941)
T ss_pred ccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhhcccccHHHHHH--HHHH
Confidence 111 1122223 57999999988754211 1113444 89999999996 3344444322 2334
Q ss_pred ccCccceEEEeccccCHH---HHHhhhC--CCCeeccCCccccceeeehhhHHhhhcccccccccccchhhhhHHHHhhh
Q 002521 394 PRRRDLRLILMSATLNAE---LFSNYFG--GAPTIHIPGFTYPVQAHFLEDVLEMTGYKLTSLNQVDDYGQEKLWKTQRQ 468 (913)
Q Consensus 394 ~~~~~~kiIlmSATl~~~---~~~~yf~--~~~~i~i~g~~~pv~~~yl~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (913)
.+.+.+.+|.+|||.+.. ++.+-++ ++.+ ......-|- .+|-
T Consensus 416 ~~~~~vP~iALTATAT~~v~~DIi~~L~l~~~~~-~~~sfnR~N-L~ye------------------------------- 462 (941)
T KOG0351|consen 416 IRFPGVPFIALTATATERVREDVIRSLGLRNPEL-FKSSFNRPN-LKYE------------------------------- 462 (941)
T ss_pred hhCCCCCeEEeehhccHHHHHHHHHHhCCCCcce-ecccCCCCC-ceEE-------------------------------
Confidence 455667899999998653 3333333 1221 111110000 0000
Q ss_pred hchhhhhhhHHHHHHHHHhhccccccchhhhhhhccccccccchhhHHHHHHHHhhhcCCCcEEEEcCChHHHHHHHHHH
Q 002521 469 LLPRKRKNQITALVEDALHKSNFENYSSRARDSLASWTADCIGFNLIEAVLCHICRKECPGAVLVFMTGWEDISCLRDQL 548 (913)
Q Consensus 469 ~~~~~~~~~i~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~li~~ll~~i~~~~~~g~iLVF~~~~~~i~~l~~~L 548 (913)
..+.. +.+....++..+-...+.+.+||+|.++.+++.+...|
T Consensus 463 V~~k~-------------------------------------~~~~~~~~~~~~~~~~~~~s~IIYC~sr~~ce~vs~~L 505 (941)
T KOG0351|consen 463 VSPKT-------------------------------------DKDALLDILEESKLRHPDQSGIIYCLSRKECEQVSAVL 505 (941)
T ss_pred EEecc-------------------------------------CccchHHHHHHhhhcCCCCCeEEEeCCcchHHHHHHHH
Confidence 00000 00111122333334456789999999999999999999
Q ss_pred HcCCCCCCCCCeEEEEecCCCChHHHHHHhccCCCCccEEEEecchhhhcCCCCCeEEEEeCCCCcceeecCCCCCCcCC
Q 002521 549 KSHPLLGDPNRVLLLTCHGSMPTSEQKFIFEKAPPNIRKIVLATNMAEASITINDIVFVVDCGKAKETTYDALNNTPCLL 628 (913)
Q Consensus 549 ~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~g~~kVLVATniae~GIdIp~v~~VId~g~~k~~~yd~~~~~~~l~ 628 (913)
... +.....+|+||+..+|..|...|-.++++|||||=++++|||.|||++||++++||
T Consensus 506 ~~~-------~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~ViH~~lPk-------------- 564 (941)
T KOG0351|consen 506 RSL-------GKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDVRFVIHYSLPK-------------- 564 (941)
T ss_pred HHh-------chhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCceeEEEECCCch--------------
Confidence 987 67889999999999999999999999999999999999999999999999999999
Q ss_pred ccccCHhhHHHHhcccCCC-CCcEEEEecChhhHHhhh
Q 002521 629 PSWISQASARQRRGRAGRV-QPGQCYHLYPRCVYEAFA 665 (913)
Q Consensus 629 ~~~iSka~~~QR~GRAGR~-~~G~c~~L~t~~~~~~l~ 665 (913)
|-..|.|-+|||||. .+..|..+|.-.++..+.
T Consensus 565 ----s~E~YYQE~GRAGRDG~~s~C~l~y~~~D~~~l~ 598 (941)
T KOG0351|consen 565 ----SFEGYYQEAGRAGRDGLPSSCVLLYGYADISELR 598 (941)
T ss_pred ----hHHHHHHhccccCcCCCcceeEEecchhHHHHHH
Confidence 777999999999999 789999999988776543
No 96
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.90 E-value=1.2e-22 Score=239.22 Aligned_cols=107 Identities=23% Similarity=0.233 Sum_probs=95.4
Q ss_pred cCCCcEEEEcCChHHHHHHHHHHHcCCCCCCCCCeEEEEecCCCChHHHHHHhccCCCCccEEEEecchhhhcCCCCC--
Q 002521 526 ECPGAVLVFMTGWEDISCLRDQLKSHPLLGDPNRVLLLTCHGSMPTSEQKFIFEKAPPNIRKIVLATNMAEASITIND-- 603 (913)
Q Consensus 526 ~~~g~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~g~~kVLVATniae~GIdIp~-- 603 (913)
..+.++||||++.+.++.+...|... ++....+|+. +.+|+..+..|..+...|+||||+|++|+||+.
T Consensus 403 ~~grpvLV~t~si~~se~ls~~L~~~-------gi~~~~Lna~--q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~ 473 (745)
T TIGR00963 403 AKGQPVLVGTTSVEKSELLSNLLKER-------GIPHNVLNAK--NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEE 473 (745)
T ss_pred hcCCCEEEEeCcHHHHHHHHHHHHHc-------CCCeEEeeCC--hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccc
Confidence 35678999999999999999999986 7778889998 778899999999999999999999999999998
Q ss_pred -----eEEEEeCCCCcceeecCCCCCCcCCccccCHhhHHHHhcccCCC-CCcEEEEecChh
Q 002521 604 -----IVFVVDCGKAKETTYDALNNTPCLLPSWISQASARQRRGRAGRV-QPGQCYHLYPRC 659 (913)
Q Consensus 604 -----v~~VId~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~-~~G~c~~L~t~~ 659 (913)
..+||++.+|. |...+.||+||+||. .||.+..+.+.+
T Consensus 474 V~~~GGl~VI~t~~p~------------------s~ri~~q~~GRtGRqG~~G~s~~~ls~e 517 (745)
T TIGR00963 474 VKELGGLYVIGTERHE------------------SRRIDNQLRGRSGRQGDPGSSRFFLSLE 517 (745)
T ss_pred hhhcCCcEEEecCCCC------------------cHHHHHHHhccccCCCCCcceEEEEecc
Confidence 45999977776 667899999999999 789988887765
No 97
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.90 E-value=8.3e-22 Score=235.77 Aligned_cols=107 Identities=22% Similarity=0.255 Sum_probs=95.6
Q ss_pred cCCCcEEEEcCChHHHHHHHHHHHcCCCCCCCCCeEEEEecCCCChHHHHHHhccCCCCccEEEEecchhhhcCCC---C
Q 002521 526 ECPGAVLVFMTGWEDISCLRDQLKSHPLLGDPNRVLLLTCHGSMPTSEQKFIFEKAPPNIRKIVLATNMAEASITI---N 602 (913)
Q Consensus 526 ~~~g~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~g~~kVLVATniae~GIdI---p 602 (913)
..+.++||||++.+.++.++..|... ++.+..+||.+...++..+...+..| .|+||||+|++|+|| |
T Consensus 426 ~~~~pvLIf~~t~~~se~l~~~L~~~-------gi~~~~L~~~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~ 496 (790)
T PRK09200 426 ETGRPVLIGTGSIEQSETFSKLLDEA-------GIPHNLLNAKNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGE 496 (790)
T ss_pred hcCCCEEEEeCcHHHHHHHHHHHHHC-------CCCEEEecCCccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCccc
Confidence 35678999999999999999999986 78899999999999998888888777 799999999999999 7
Q ss_pred CeE-----EEEeCCCCcceeecCCCCCCcCCccccCHhhHHHHhcccCCC-CCcEEEEecChh
Q 002521 603 DIV-----FVVDCGKAKETTYDALNNTPCLLPSWISQASARQRRGRAGRV-QPGQCYHLYPRC 659 (913)
Q Consensus 603 ~v~-----~VId~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~-~~G~c~~L~t~~ 659 (913)
+|. +||++++|. |...|.||+|||||. .+|.|+.+++.+
T Consensus 497 ~V~~~GGL~VI~~d~p~------------------s~r~y~qr~GRtGR~G~~G~s~~~is~e 541 (790)
T PRK09200 497 GVHELGGLAVIGTERME------------------SRRVDLQLRGRSGRQGDPGSSQFFISLE 541 (790)
T ss_pred ccccccCcEEEeccCCC------------------CHHHHHHhhccccCCCCCeeEEEEEcch
Confidence 998 999977776 666889999999999 689999988754
No 98
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.90 E-value=2.6e-22 Score=250.77 Aligned_cols=368 Identities=18% Similarity=0.224 Sum_probs=203.6
Q ss_pred CCcHHHHHHHHHHHH-----cCCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHHHHHhC
Q 002521 249 LPSFKEKERLLQAIA-----RNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVSAERG 323 (913)
Q Consensus 249 lP~~~~q~~il~~i~-----~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv~~~~~ 323 (913)
+....||.+++.++. .++.++|+++||||||..+...+.. ++.... ..+|++++||++|+.|..+.|.....
T Consensus 412 ~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li~~-L~~~~~--~~rVLfLvDR~~L~~Qa~~~F~~~~~ 488 (1123)
T PRK11448 412 LGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALMYR-LLKAKR--FRRILFLVDRSALGEQAEDAFKDTKI 488 (1123)
T ss_pred CCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHH-HHhcCc--cCeEEEEecHHHHHHHHHHHHHhccc
Confidence 456778888877664 2467889999999999776554433 333322 34788888999999999998876421
Q ss_pred CC---cccEeeeEEeccccCCCCceEEEEecHHHHHHHhcC------CCCCCceEEEeccccccCcchH-------H---
Q 002521 324 EP---LGETVGYKVRLEGMKGKNTHLLFCTSGILLRRLLSD------HNLNGVTHVFVDEIHERGMNED-------F--- 384 (913)
Q Consensus 324 ~~---~g~~vGy~v~~e~~~~~~~~Ivv~T~g~Ll~~l~~~------~~L~~~s~IIIDEaHer~~~~d-------~--- 384 (913)
.. +....+...-.+.....+..|+|+|.+.|.+.+... ..+..+++||||||| |+...| .
T Consensus 489 ~~~~~~~~i~~i~~L~~~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaH-Rs~~~d~~~~~~~~~~~ 567 (1123)
T PRK11448 489 EGDQTFASIYDIKGLEDKFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAH-RGYTLDKEMSEGELQFR 567 (1123)
T ss_pred ccccchhhhhchhhhhhhcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCC-CCCccccccccchhccc
Confidence 11 111111100011122345799999999998875321 357889999999999 654211 0
Q ss_pred ----HHHHHHHhCccCccceEEEeccccCHHHHHhhhCCCCeecc-------CCccccc--eeeehhhHHhhhccccccc
Q 002521 385 ----LLIVLKDLLPRRRDLRLILMSATLNAELFSNYFGGAPTIHI-------PGFTYPV--QAHFLEDVLEMTGYKLTSL 451 (913)
Q Consensus 385 ----ll~llk~ll~~~~~~kiIlmSATl~~~~~~~yf~~~~~i~i-------~g~~~pv--~~~yl~di~~~~~~~~~~~ 451 (913)
.....+.++... +..+|+||||+... ...+||. |+... .|...+. ...|.. .+...|......
T Consensus 568 ~~~~~~~~yr~iL~yF-dA~~IGLTATP~r~-t~~~FG~-pv~~Ysl~eAI~DG~Lv~~~~p~~i~t-~~~~~gi~~~~~ 643 (1123)
T PRK11448 568 DQLDYVSKYRRVLDYF-DAVKIGLTATPALH-TTEIFGE-PVYTYSYREAVIDGYLIDHEPPIRIET-RLSQEGIHFEKG 643 (1123)
T ss_pred hhhhHHHHHHHHHhhc-CccEEEEecCCccc-hhHHhCC-eeEEeeHHHHHhcCCcccCcCCEEEEE-Eecccccccccc
Confidence 012344555533 45789999999643 3467763 33221 1222100 000000 000000000000
Q ss_pred ccccchhhhhHHHHhhhhchhhhhhhHHHHHHHHHhhccccccchhhhhhhccccccccchhhHHHHHHHHhhhcCCCcE
Q 002521 452 NQVDDYGQEKLWKTQRQLLPRKRKNQITALVEDALHKSNFENYSSRARDSLASWTADCIGFNLIEAVLCHICRKECPGAV 531 (913)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~li~~ll~~i~~~~~~g~i 531 (913)
.....+.... ..................+....+ .... .-..+..++.++ ....++++
T Consensus 644 e~~~~~~~~~-~~i~~~~l~d~~~~~~~~~~~~vi-------------------~~~~-~~~i~~~l~~~l-~~~~~~Kt 701 (1123)
T PRK11448 644 EEVEVINTQT-GEIDLATLEDEVDFEVEDFNRRVI-------------------TESF-NRVVCEELAKYL-DPTGEGKT 701 (1123)
T ss_pred chhhhcchhh-hhhhhccCcHHHhhhHHHHHHHHh-------------------hHHH-HHHHHHHHHHHH-hccCCCcE
Confidence 0000000000 000000000000000000000000 0000 001112233333 33345899
Q ss_pred EEEcCChHHHHHHHHHHHcCCC--CCCCCCeEEEEecCCCChHHHHHHhccCCCCcc-EEEEecchhhhcCCCCCeEEEE
Q 002521 532 LVFMTGWEDISCLRDQLKSHPL--LGDPNRVLLLTCHGSMPTSEQKFIFEKAPPNIR-KIVLATNMAEASITINDIVFVV 608 (913)
Q Consensus 532 LVF~~~~~~i~~l~~~L~~~~~--~~~~~~~~v~~lHs~l~~~er~~v~~~f~~g~~-kVLVATniae~GIdIp~v~~VI 608 (913)
||||.+.++++.+++.|..... .+......+..+||+.+ ++..+++.|+++.. +|+|+++++.+|+|+|.|.+||
T Consensus 702 iIF~~s~~HA~~i~~~L~~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~vV 779 (1123)
T PRK11448 702 LIFAATDAHADMVVRLLKEAFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSICNLV 779 (1123)
T ss_pred EEEEcCHHHHHHHHHHHHHHHHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCcccccEEE
Confidence 9999999999999998875310 11112334566888885 45679999999886 7999999999999999999999
Q ss_pred eCCCCcceeecCCCCCCcCCccccCHhhHHHHhcccCCCCC--cE-EEEecCh-hhHHhhhh
Q 002521 609 DCGKAKETTYDALNNTPCLLPSWISQASARQRRGRAGRVQP--GQ-CYHLYPR-CVYEAFAE 666 (913)
Q Consensus 609 d~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~~~--G~-c~~L~t~-~~~~~l~~ 666 (913)
....++ |+..|+||+||+.|..+ |+ ++.+|.- ..++.+..
T Consensus 780 f~rpvk------------------S~~lf~QmIGRgtR~~~~~~K~~f~I~D~vg~~~~l~~ 823 (1123)
T PRK11448 780 FLRRVR------------------SRILYEQMLGRATRLCPEIGKTHFRIFDAVDIYEALES 823 (1123)
T ss_pred EecCCC------------------CHHHHHHHHhhhccCCccCCCceEEEEehHHHHHhccc
Confidence 865555 88899999999999977 44 4555542 33444443
No 99
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.87 E-value=2e-21 Score=226.92 Aligned_cols=348 Identities=19% Similarity=0.218 Sum_probs=214.9
Q ss_pred hhhcCCCcHHHHHHHH--HHHHcCCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHHHHH
Q 002521 244 DFRKSLPSFKEKERLL--QAIARNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVSAE 321 (913)
Q Consensus 244 ~~r~~lP~~~~q~~il--~~i~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv~~~ 321 (913)
+....+..|..|.+-+ ..++++.+.|.++||+.|||+++.+.++...+...+ .++.+.|-...+..-...++.+
T Consensus 217 ~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~rr----~~llilp~vsiv~Ek~~~l~~~ 292 (1008)
T KOG0950|consen 217 KDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCRRR----NVLLILPYVSIVQEKISALSPF 292 (1008)
T ss_pred HhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHHhh----ceeEecceeehhHHHHhhhhhh
Confidence 3444556677777764 456789999999999999999999999988876544 2333347766666555444332
Q ss_pred hCCCcccEe-eeEEeccc-cCCCCceEEEEecHHH---HHHHhcCCCCCCceEEEecccc-----ccCcchHHHHHHHHH
Q 002521 322 RGEPLGETV-GYKVRLEG-MKGKNTHLLFCTSGIL---LRRLLSDHNLNGVTHVFVDEIH-----ERGMNEDFLLIVLKD 391 (913)
Q Consensus 322 ~~~~~g~~v-Gy~v~~e~-~~~~~~~Ivv~T~g~L---l~~l~~~~~L~~~s~IIIDEaH-----er~~~~d~ll~llk~ 391 (913)
...+|-.| +|..++.. .......+.+||.+.- .+.+.....+..++.|||||.| +||...+.++.-+..
T Consensus 293 -~~~~G~~ve~y~g~~~p~~~~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d~~rg~~lE~~l~k~~y 371 (1008)
T KOG0950|consen 293 -SIDLGFPVEEYAGRFPPEKRRKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGDKGRGAILELLLAKILY 371 (1008)
T ss_pred -ccccCCcchhhcccCCCCCcccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeeccccchHHHHHHHHHHH
Confidence 22223222 23322221 1224578999998654 4455555578889999999999 466655544443221
Q ss_pred hCccCccceEEEecccc-CHHHHHhhhCCCCeeccCCccccceeeehhhHHhhhcccccccccccchhhhhHHHHhhhhc
Q 002521 392 LLPRRRDLRLILMSATL-NAELFSNYFGGAPTIHIPGFTYPVQAHFLEDVLEMTGYKLTSLNQVDDYGQEKLWKTQRQLL 470 (913)
Q Consensus 392 ll~~~~~~kiIlmSATl-~~~~~~~yf~~~~~i~i~g~~~pv~~~yl~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (913)
. .....+++|+||||+ |..+++.|++. .+....-|+.|...+... | . ..
T Consensus 372 ~-~~~~~~~iIGMSATi~N~~lL~~~L~A-~~y~t~fRPv~L~E~ik~------G-------------~---------~i 421 (1008)
T KOG0950|consen 372 E-NLETSVQIIGMSATIPNNSLLQDWLDA-FVYTTRFRPVPLKEYIKP------G-------------S---------LI 421 (1008)
T ss_pred h-ccccceeEeeeecccCChHHHHHHhhh-hheecccCcccchhccCC------C-------------c---------cc
Confidence 1 122337899999999 77889999872 222222222222222100 0 0 00
Q ss_pred hhhhhhhHHHHHHHHHhhccccccchhhhhhhccccccccchhhHHHHHHHHh-hhc-CCCcEEEEcCChHHHHHHHHHH
Q 002521 471 PRKRKNQITALVEDALHKSNFENYSSRARDSLASWTADCIGFNLIEAVLCHIC-RKE-CPGAVLVFMTGWEDISCLRDQL 548 (913)
Q Consensus 471 ~~~~~~~i~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~li~~ll~~i~-~~~-~~g~iLVF~~~~~~i~~l~~~L 548 (913)
+......+..-+..... .+ . ...+.+.+ ..+| +.. ++..+|||||++..++.++..+
T Consensus 422 ~~~~r~~~lr~ia~l~~-~~-----------~-----g~~dpD~~----v~L~tet~~e~~~~lvfc~sk~~ce~~a~~~ 480 (1008)
T KOG0950|consen 422 YESSRNKVLREIANLYS-SN-----------L-----GDEDPDHL----VGLCTETAPEGSSVLVFCPSKKNCENVASLI 480 (1008)
T ss_pred ccchhhHHHHHhhhhhh-hh-----------c-----ccCCCcce----eeehhhhhhcCCeEEEEcCcccchHHHHHHH
Confidence 00000000000000000 00 0 00000111 1111 111 2345999999999999888665
Q ss_pred HcC-------------------------------CCCCCCCCeEEEEecCCCChHHHHHHhccCCCCccEEEEecchhhh
Q 002521 549 KSH-------------------------------PLLGDPNRVLLLTCHGSMPTSEQKFIFEKAPPNIRKIVLATNMAEA 597 (913)
Q Consensus 549 ~~~-------------------------------~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~g~~kVLVATniae~ 597 (913)
... +.+...-.+.+.++|+|++.++|+.|...|++|...|++||++++.
T Consensus 481 ~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld~Vl~~ti~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaa 560 (1008)
T KOG0950|consen 481 AKKVPKHIKSEKRLGLWELLSISNLLRRIPGILDPVLAKTIPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAA 560 (1008)
T ss_pred HHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcccchHHheeccccceecccccccchHHHHHHHHHhcCeEEEEecchhhc
Confidence 431 0011122457899999999999999999999999999999999999
Q ss_pred cCCCCCeEEEEeCCCCcceeecCCCCCCcCCccccCHhhHHHHhcccCCC---CCcEEEEecChhhH
Q 002521 598 SITINDIVFVVDCGKAKETTYDALNNTPCLLPSWISQASARQRRGRAGRV---QPGQCYHLYPRCVY 661 (913)
Q Consensus 598 GIdIp~v~~VId~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~---~~G~c~~L~t~~~~ 661 (913)
|++.|..+++|-+-. +....+++.+|.||+|||||+ .-|.++..+.+..-
T Consensus 561 GVNLPArRVIiraP~--------------~g~~~l~~~~YkQM~GRAGR~gidT~GdsiLI~k~~e~ 613 (1008)
T KOG0950|consen 561 GVNLPARRVIIRAPY--------------VGREFLTRLEYKQMVGRAGRTGIDTLGDSILIIKSSEK 613 (1008)
T ss_pred cCcCCcceeEEeCCc--------------cccchhhhhhHHhhhhhhhhcccccCcceEEEeeccch
Confidence 999999999996333 233456888999999999999 56999999887653
No 100
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.85 E-value=4.2e-20 Score=194.46 Aligned_cols=303 Identities=18% Similarity=0.183 Sum_probs=201.8
Q ss_pred HHHHHHHHHHHcCCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHHHHHhCCCcccEeee
Q 002521 253 KEKERLLQAIARNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVSAERGEPLGETVGY 332 (913)
Q Consensus 253 ~~q~~il~~i~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv~~~~~~~~g~~vGy 332 (913)
+.|.+.+.+...+.++++..|||.||++++.++.+-. ...+.|+| |...|.....-.+.. +|......-.-
T Consensus 97 plq~~ain~~ma~ed~~lil~tgggkslcyqlpal~a------dg~alvi~--plislmedqil~lkq-lgi~as~lnan 167 (695)
T KOG0353|consen 97 PLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCA------DGFALVIC--PLISLMEDQILQLKQ-LGIDASMLNAN 167 (695)
T ss_pred hhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHhc------CCceEeec--hhHHHHHHHHHHHHH-hCcchhhccCc
Confidence 3488899999999999999999999999998887642 23456667 999888766555543 22211100000
Q ss_pred EE-----ecc---ccCCCCceEEEEecHHHHH------HHhcCCCCCCceEEEeccccc-----cCcchHHH-HHHHHHh
Q 002521 333 KV-----RLE---GMKGKNTHLLFCTSGILLR------RLLSDHNLNGVTHVFVDEIHE-----RGMNEDFL-LIVLKDL 392 (913)
Q Consensus 333 ~v-----~~e---~~~~~~~~Ivv~T~g~Ll~------~l~~~~~L~~~s~IIIDEaHe-----r~~~~d~l-l~llk~l 392 (913)
.. +.+ ........++|.||+.+.. .|........+.+|-|||+|. .++.+|+. +.+|++
T Consensus 168 sske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~iaidevhccsqwghdfr~dy~~l~ilkr- 246 (695)
T KOG0353|consen 168 SSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIAIDEVHCCSQWGHDFRPDYKALGILKR- 246 (695)
T ss_pred ccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEEeecceeehhhhCcccCcchHHHHHHHH-
Confidence 00 000 1223457899999987753 333333567789999999995 45666653 455554
Q ss_pred CccCccceEEEeccccCHHHH---HhhhCCCCee-ccCCccccceeeehhhHHhhhcccccccccccchhhhhHHHHhhh
Q 002521 393 LPRRRDLRLILMSATLNAELF---SNYFGGAPTI-HIPGFTYPVQAHFLEDVLEMTGYKLTSLNQVDDYGQEKLWKTQRQ 468 (913)
Q Consensus 393 l~~~~~~kiIlmSATl~~~~~---~~yf~~~~~i-~i~g~~~pv~~~yl~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (913)
..++..+|+++||.....+ ...+.-...+ ...|...|. .+|--
T Consensus 247 --qf~~~~iigltatatn~vl~d~k~il~ie~~~tf~a~fnr~n-l~yev------------------------------ 293 (695)
T KOG0353|consen 247 --QFKGAPIIGLTATATNHVLDDAKDILCIEAAFTFRAGFNRPN-LKYEV------------------------------ 293 (695)
T ss_pred --hCCCCceeeeehhhhcchhhHHHHHHhHHhhheeecccCCCC-ceeEe------------------------------
Confidence 4556779999999743311 1111100000 000000000 00000
Q ss_pred hchhhhhhhHHHHHHHHHhhccccccchhhhhhhccccccccchhhHHHHHHHHhhhcCCCcEEEEcCChHHHHHHHHHH
Q 002521 469 LLPRKRKNQITALVEDALHKSNFENYSSRARDSLASWTADCIGFNLIEAVLCHICRKECPGAVLVFMTGWEDISCLRDQL 548 (913)
Q Consensus 469 ~~~~~~~~~i~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~li~~ll~~i~~~~~~g~iLVF~~~~~~i~~l~~~L 548 (913)
........+-++++...|.....+...||||-++++++.++..|
T Consensus 294 ------------------------------------~qkp~n~dd~~edi~k~i~~~f~gqsgiiyc~sq~d~ekva~al 337 (695)
T KOG0353|consen 294 ------------------------------------RQKPGNEDDCIEDIAKLIKGDFAGQSGIIYCFSQKDCEKVAKAL 337 (695)
T ss_pred ------------------------------------eeCCCChHHHHHHHHHHhccccCCCcceEEEeccccHHHHHHHH
Confidence 00000001122333333434445667899999999999999999
Q ss_pred HcCCCCCCCCCeEEEEecCCCChHHHHHHhccCCCCccEEEEecchhhhcCCCCCeEEEEeCCCCcceeecCCCCCCcCC
Q 002521 549 KSHPLLGDPNRVLLLTCHGSMPTSEQKFIFEKAPPNIRKIVLATNMAEASITINDIVFVVDCGKAKETTYDALNNTPCLL 628 (913)
Q Consensus 549 ~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~g~~kVLVATniae~GIdIp~v~~VId~g~~k~~~yd~~~~~~~l~ 628 (913)
+.+ ++....+|+.|.++++..+-+.+-.|++.|||||-.+.+|||-|+|++||+-.+||
T Consensus 338 kn~-------gi~a~~yha~lep~dks~~hq~w~a~eiqvivatvafgmgidkpdvrfvihhsl~k-------------- 396 (695)
T KOG0353|consen 338 KNH-------GIHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATVAFGMGIDKPDVRFVIHHSLPK-------------- 396 (695)
T ss_pred Hhc-------CccccccccccCccccccccccccccceEEEEEEeeecccCCCCCeeEEEecccch--------------
Confidence 998 88889999999999999999999999999999999999999999999999988887
Q ss_pred ccccCHhhHHH-------------------------------------------HhcccCCC-CCcEEEEecChh
Q 002521 629 PSWISQASARQ-------------------------------------------RRGRAGRV-QPGQCYHLYPRC 659 (913)
Q Consensus 629 ~~~iSka~~~Q-------------------------------------------R~GRAGR~-~~G~c~~L~t~~ 659 (913)
|..+|.| -.|||||. .+..|+..|.-.
T Consensus 397 ----sienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesgragrd~~~a~cilyy~~~ 467 (695)
T KOG0353|consen 397 ----SIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDDMKADCILYYGFA 467 (695)
T ss_pred ----hHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccCCCcccEEEEechH
Confidence 5557777 78999999 788999888643
No 101
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.85 E-value=1.3e-19 Score=222.20 Aligned_cols=123 Identities=15% Similarity=0.088 Sum_probs=100.5
Q ss_pred hhHHHHHHHHhhhcCCCcEEEEcCChHHHHHHHHHHHcCCCCCCCCCeEEEEecCCCChHHHHHHhccCCCC--ccEEEE
Q 002521 513 NLIEAVLCHICRKECPGAVLVFMTGWEDISCLRDQLKSHPLLGDPNRVLLLTCHGSMPTSEQKFIFEKAPPN--IRKIVL 590 (913)
Q Consensus 513 ~li~~ll~~i~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~g--~~kVLV 590 (913)
+-+...+..+++...+.++||||.++..+..+.+.|... .++.+..+||+|+..+|.++++.|+++ ..+|+|
T Consensus 478 d~Ki~~L~~~L~~~~~~KvLVF~~~~~t~~~L~~~L~~~------~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLI 551 (956)
T PRK04914 478 DPRVEWLIDFLKSHRSEKVLVICAKAATALQLEQALRER------EGIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLL 551 (956)
T ss_pred CHHHHHHHHHHHhcCCCeEEEEeCcHHHHHHHHHHHhhc------cCeeEEEEECCCCHHHHHHHHHHHhcCCCCccEEE
Confidence 334445566666666789999999999999999999543 278899999999999999999999874 589999
Q ss_pred ecchhhhcCCCCCeEEEEeCCCCcceeecCCCCCCcCCccccCHhhHHHHhcccCCC-CCc--EEEEecChh
Q 002521 591 ATNMAEASITINDIVFVVDCGKAKETTYDALNNTPCLLPSWISQASARQRRGRAGRV-QPG--QCYHLYPRC 659 (913)
Q Consensus 591 ATniae~GIdIp~v~~VId~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~-~~G--~c~~L~t~~ 659 (913)
||+++++|+|++.+++||++++|. +...|.||+||+||. +.| .+|.++.+.
T Consensus 552 sTdvgseGlNlq~a~~VInfDlP~------------------nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~~ 605 (956)
T PRK04914 552 CSEIGSEGRNFQFASHLVLFDLPF------------------NPDLLEQRIGRLDRIGQKHDIQIHVPYLEG 605 (956)
T ss_pred echhhccCCCcccccEEEEecCCC------------------CHHHHHHHhcccccCCCCceEEEEEccCCC
Confidence 999999999999999999966654 555788999999998 333 455665543
No 102
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=99.83 E-value=2e-20 Score=199.97 Aligned_cols=306 Identities=18% Similarity=0.201 Sum_probs=178.7
Q ss_pred EEEEcchhHHHHHHHHHHHHHHhCCC----cc--cEee-eEEecc-ccCCCCceEEEEecHHHHHHHhcCC-CCCCceEE
Q 002521 300 NIICTQPRRISAMAVSERVSAERGEP----LG--ETVG-YKVRLE-GMKGKNTHLLFCTSGILLRRLLSDH-NLNGVTHV 370 (913)
Q Consensus 300 ~Ilv~qPrr~La~qva~rv~~~~~~~----~g--~~vG-y~v~~e-~~~~~~~~Ivv~T~g~Ll~~l~~~~-~L~~~s~I 370 (913)
..+++.|.|+||.|....+.+..-.. +. ..+| ...+.. ......++|+|+|||+|++.+.... .+..+.++
T Consensus 288 ~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g~~~lt~crFl 367 (725)
T KOG0349|consen 288 EAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKGLVTLTHCRFL 367 (725)
T ss_pred ceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhccceeeeeeEEE
Confidence 35566799999999999776543211 11 0111 111111 1122568999999999999997766 78899999
Q ss_pred Eecccccc-C-cchHHHHHHHHHhCc---cCccceEEEeccccCHH---HHHh-hhCCCCeeccCCc-cccceeeehhhH
Q 002521 371 FVDEIHER-G-MNEDFLLIVLKDLLP---RRRDLRLILMSATLNAE---LFSN-YFGGAPTIHIPGF-TYPVQAHFLEDV 440 (913)
Q Consensus 371 IIDEaHer-~-~~~d~ll~llk~ll~---~~~~~kiIlmSATl~~~---~~~~-yf~~~~~i~i~g~-~~pv~~~yl~di 440 (913)
|+||++-. + .+.|++..+...+-. ....++.+++|||+..- .+.+ .+.-+..+...|. ..|-+.|.....
T Consensus 368 vlDead~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD~vpetvHhvv~l 447 (725)
T KOG0349|consen 368 VLDEADLLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGEDLVPETVHHVVKL 447 (725)
T ss_pred EecchhhhhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeEecccccccchhhccceee
Confidence 99999942 2 456666555444433 22347899999998431 1111 1000001111110 111111111000
Q ss_pred HhhhcccccccccccchhhhhHHHHhhhhchhhhhhhHHHHHHHHHhhccccccchhhhhhhccccccccchhhHHHHHH
Q 002521 441 LEMTGYKLTSLNQVDDYGQEKLWKTQRQLLPRKRKNQITALVEDALHKSNFENYSSRARDSLASWTADCIGFNLIEAVLC 520 (913)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~li~~ll~ 520 (913)
. ..+++ ..|...++.... .+... .+.+. ..+.+++. +... +..-.-+.-+.
T Consensus 448 v---------~p~~d-----~sw~~lr~~i~t-d~vh~----kdn~~---pg~~Spe~------~s~a-~kilkgEy~v~ 498 (725)
T KOG0349|consen 448 V---------CPSVD-----GSWCDLRQFIET-DKVHT----KDNLL---PGQVSPEN------PSSA-TKILKGEYGVV 498 (725)
T ss_pred c---------CCccC-----ccHHHHhhhhcc-CCccc----ccccc---cccCCCCC------hhhh-hHHhcCchhhh
Confidence 0 00000 011100000000 00000 00000 00000000 0000 00000000111
Q ss_pred HHhhhcCCCcEEEEcCChHHHHHHHHHHHcCCCCCCCCCeEEEEecCCCChHHHHHHhccCCCCccEEEEecchhhhcCC
Q 002521 521 HICRKECPGAVLVFMTGWEDISCLRDQLKSHPLLGDPNRVLLLTCHGSMPTSEQKFIFEKAPPNIRKIVLATNMAEASIT 600 (913)
Q Consensus 521 ~i~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~g~~kVLVATniae~GId 600 (913)
. .+...-.+.+|||.++.+|..+.+++.... ...+.+..+||+..+.||+..++.|+.+..+.+|||++|++|||
T Consensus 499 a-i~~h~mdkaiifcrtk~dcDnLer~~~qkg----g~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargld 573 (725)
T KOG0349|consen 499 A-IRRHAMDKAIIFCRTKQDCDNLERMMNQKG----GKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLD 573 (725)
T ss_pred h-hhhhccCceEEEEeccccchHHHHHHHHcC----CccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhcccc
Confidence 1 123345679999999999999999998752 13688999999999999999999999999999999999999999
Q ss_pred CCCeEEEEeCCCCcceeecCCCCCCcCCccccCHhhHHHHhcccCCC-CCcEEEEecC
Q 002521 601 INDIVFVVDCGKAKETTYDALNNTPCLLPSWISQASARQRRGRAGRV-QPGQCYHLYP 657 (913)
Q Consensus 601 Ip~v~~VId~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~-~~G~c~~L~t 657 (913)
|.++-++|+..+|. .|.+|.||+||+||. +-|.++.|..
T Consensus 574 i~g~p~~invtlpd------------------~k~nyvhrigrvgraermglaislva 613 (725)
T KOG0349|consen 574 ITGLPFMINVTLPD------------------DKTNYVHRIGRVGRAERMGLAISLVA 613 (725)
T ss_pred ccCCceEEEEecCc------------------ccchhhhhhhccchhhhcceeEEEee
Confidence 99999999977776 455999999999999 7899998864
No 103
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.80 E-value=1.3e-18 Score=207.94 Aligned_cols=125 Identities=18% Similarity=0.125 Sum_probs=88.8
Q ss_pred cCCCcHHHHHHHHHHHHcCCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHHHHHhCCCc
Q 002521 247 KSLPSFKEKERLLQAIARNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVSAERGEPL 326 (913)
Q Consensus 247 ~~lP~~~~q~~il~~i~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv~~~~~~~~ 326 (913)
+.+-...+--+++-.+.=++--|..++||+|||+++.++++..++. |.. +.|++|++.||.|.++.+..... .+
T Consensus 77 R~lg~~~ydvQliGg~~Lh~G~Iaem~TGeGKTL~a~Lpa~~~al~---G~~--V~VvTpn~yLA~qd~e~m~~l~~-~l 150 (896)
T PRK13104 77 RTLGLRHFDVQLIGGMVLHEGNIAEMRTGEGKTLVATLPAYLNAIS---GRG--VHIVTVNDYLAKRDSQWMKPIYE-FL 150 (896)
T ss_pred HHcCCCcchHHHhhhhhhccCccccccCCCCchHHHHHHHHHHHhc---CCC--EEEEcCCHHHHHHHHHHHHHHhc-cc
Confidence 3455555555667766656666788999999999999999876653 233 44555999999999998876543 35
Q ss_pred ccEeeeEEeccc----cCCCCceEEEEecHHH-HHHHhcCC--CC-----CCceEEEeccccc
Q 002521 327 GETVGYKVRLEG----MKGKNTHLLFCTSGIL-LRRLLSDH--NL-----NGVTHVFVDEIHE 377 (913)
Q Consensus 327 g~~vGy~v~~e~----~~~~~~~Ivv~T~g~L-l~~l~~~~--~L-----~~~s~IIIDEaHe 377 (913)
|..||....... ...-.++|+|+||+.| +++|..+. .+ ..+.++||||||.
T Consensus 151 GLtv~~i~gg~~~~~r~~~y~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDs 213 (896)
T PRK13104 151 GLTVGVIYPDMSHKEKQEAYKADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDS 213 (896)
T ss_pred CceEEEEeCCCCHHHHHHHhCCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhh
Confidence 556665433211 1123579999999999 88887663 23 5899999999993
No 104
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.79 E-value=1e-18 Score=175.99 Aligned_cols=170 Identities=22% Similarity=0.204 Sum_probs=112.9
Q ss_pred hhhhHHhhhcCCCcHHHHHHHHHHHHcCCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHH-
Q 002521 238 EGNKMLDFRKSLPSFKEKERLLQAIARNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSE- 316 (913)
Q Consensus 238 ~~~~l~~~r~~lP~~~~q~~il~~i~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~- 316 (913)
..+.+..-.+.-|.--+++-|.++| -+.+|+..|..|-|||.++.+..++.+- .-...+.++|...||+||.|+.+
T Consensus 53 llraivdcgfehpsevqhecipqai-lgmdvlcqaksgmgktavfvl~tlqqie--pv~g~vsvlvmchtrelafqi~~e 129 (387)
T KOG0329|consen 53 LLRAIVDCGFEHPSEVQHECIPQAI-LGMDVLCQAKSGMGKTAVFVLATLQQIE--PVDGQVSVLVMCHTRELAFQISKE 129 (387)
T ss_pred HHHHHHhccCCCchHhhhhhhhHHh-hcchhheecccCCCceeeeehhhhhhcC--CCCCeEEEEEEeccHHHHHHHHHH
Confidence 3455556677788877777777777 5667889999999999999888887663 23335666666699999999965
Q ss_pred --HHHHHhCC-CcccEe-eeEEec--cccCCCCceEEEEecHHHHHHHhcCC-CCCCceEEEeccccccCcchHHHHHHH
Q 002521 317 --RVSAERGE-PLGETV-GYKVRL--EGMKGKNTHLLFCTSGILLRRLLSDH-NLNGVTHVFVDEIHERGMNEDFLLIVL 389 (913)
Q Consensus 317 --rv~~~~~~-~~g~~v-Gy~v~~--e~~~~~~~~Ivv~T~g~Ll~~l~~~~-~L~~~s~IIIDEaHer~~~~d~ll~ll 389 (913)
|+++.+.. ++.... |..+.. +... .-++|+|+|||+++.+.++.. .|+++.++|+|||+.+--..|....+-
T Consensus 130 y~rfskymP~vkvaVFfGG~~Ikkdee~lk-~~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEcdkmle~lDMrRDvQ 208 (387)
T KOG0329|consen 130 YERFSKYMPSVKVSVFFGGLFIKKDEELLK-NCPHIVVGTPGRILALVRNRSLNLKNVKHFVLDECDKMLEQLDMRRDVQ 208 (387)
T ss_pred HHHHHhhCCCceEEEEEcceeccccHHHHh-CCCeEEEcCcHHHHHHHHhccCchhhcceeehhhHHHHHHHHHHHHHHH
Confidence 44444422 211111 122221 2222 358999999999999887765 899999999999995422222222221
Q ss_pred HHhCccCccceEEEeccccCHH
Q 002521 390 KDLLPRRRDLRLILMSATLNAE 411 (913)
Q Consensus 390 k~ll~~~~~~kiIlmSATl~~~ 411 (913)
........+-|+..+|||++.+
T Consensus 209 Eifr~tp~~KQvmmfsatlske 230 (387)
T KOG0329|consen 209 EIFRMTPHEKQVMMFSATLSKE 230 (387)
T ss_pred HHhhcCcccceeeeeeeecchh
Confidence 1111223455899999999755
No 105
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.79 E-value=3.6e-18 Score=208.59 Aligned_cols=314 Identities=21% Similarity=0.175 Sum_probs=183.1
Q ss_pred CcHHHHHHHHHHHHc---CC-eEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHHHHHhCCC
Q 002521 250 PSFKEKERLLQAIAR---NQ-VIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVSAERGEP 325 (913)
Q Consensus 250 P~~~~q~~il~~i~~---~~-~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv~~~~~~~ 325 (913)
+.+..|..+++.+.. .+ .+++.||||+|||++...+.+...... .....+++.+.|+|.++.++++++....+..
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~-~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~ 273 (733)
T COG1203 195 EGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEK-IKLKSRVIYVLPFRTIIEDMYRRAKEIFGLF 273 (733)
T ss_pred hhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhcc-ccccceEEEEccHHHHHHHHHHHHHhhhccc
Confidence 445667777777654 34 889999999999999988877655432 2245689999999999999999998755432
Q ss_pred --ccc-EeeeEEec----c------------ccCCCCceEEEEecHHHHHHHhcCCCC-----CCceEEEeccccccCcc
Q 002521 326 --LGE-TVGYKVRL----E------------GMKGKNTHLLFCTSGILLRRLLSDHNL-----NGVTHVFVDEIHERGMN 381 (913)
Q Consensus 326 --~g~-~vGy~v~~----e------------~~~~~~~~Ivv~T~g~Ll~~l~~~~~L-----~~~s~IIIDEaHer~~~ 381 (913)
.+. ..|..... . .....-..+.++||-..+......... -..+++|+||+|-..-+
T Consensus 274 ~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~~~~ 353 (733)
T COG1203 274 SVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLYADE 353 (733)
T ss_pred ccccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHhhccc
Confidence 122 12211100 0 000011233344443333211111111 23589999999954443
Q ss_pred --hHHHHHHHHHhCccCccceEEEeccccCHH---HHHhhhCCCCeeccCCccccceeeehhhHHhhhcccccccccccc
Q 002521 382 --EDFLLIVLKDLLPRRRDLRLILMSATLNAE---LFSNYFGGAPTIHIPGFTYPVQAHFLEDVLEMTGYKLTSLNQVDD 456 (913)
Q Consensus 382 --~d~ll~llk~ll~~~~~~kiIlmSATl~~~---~~~~yf~~~~~i~i~g~~~pv~~~yl~di~~~~~~~~~~~~~~~~ 456 (913)
.-++..++..+. .-+.++|+||||++.. .+..+++....+.......|....+.
T Consensus 354 ~~~~~l~~~i~~l~--~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~------------------- 412 (733)
T COG1203 354 TMLAALLALLEALA--EAGVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPG------------------- 412 (733)
T ss_pred chHHHHHHHHHHHH--hCCCCEEEEecCCCHHHHHHHHHHHhcccceeccccccccccccc-------------------
Confidence 222333333222 2356899999999875 34444442221111100000000000
Q ss_pred hhhhhHHHHhhhhchhhhhhhHHHHHHHHHhhccccccchhhhhhhccccccccchhhHHHHHHHHhhhcCCCcEEEEcC
Q 002521 457 YGQEKLWKTQRQLLPRKRKNQITALVEDALHKSNFENYSSRARDSLASWTADCIGFNLIEAVLCHICRKECPGAVLVFMT 536 (913)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~i~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~li~~ll~~i~~~~~~g~iLVF~~ 536 (913)
. .......+..... . ... .........+++++|.||
T Consensus 413 --~-----------~~~~~~~~~~~~~--~--------------------------~~~---~~~~~~~~~~~kvlvI~N 448 (733)
T COG1203 413 --L-----------KRKERVDVEDGPQ--E--------------------------ELI---ELISEEVKEGKKVLVIVN 448 (733)
T ss_pred --c-----------ccccchhhhhhhh--H--------------------------hhh---hcchhhhccCCcEEEEEe
Confidence 0 0000000000000 0 000 000111235678999999
Q ss_pred ChHHHHHHHHHHHcCCCCCCCCCeEEEEecCCCChHHHHHHhccC----CCCccEEEEecchhhhcCCCCCeEEEEeCCC
Q 002521 537 GWEDISCLRDQLKSHPLLGDPNRVLLLTCHGSMPTSEQKFIFEKA----PPNIRKIVLATNMAEASITINDIVFVVDCGK 612 (913)
Q Consensus 537 ~~~~i~~l~~~L~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f----~~g~~kVLVATniae~GIdIp~v~~VId~g~ 612 (913)
|+..+.++++.|+... ..+..+||.+...+|.+.++.. +.+...|+|||++.|.|+|| +.+++|
T Consensus 449 TV~~Aie~Y~~Lk~~~-------~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDi-dfd~mI---- 516 (733)
T COG1203 449 TVDRAIELYEKLKEKG-------PKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDI-DFDVLI---- 516 (733)
T ss_pred cHHHHHHHHHHHHhcC-------CCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEecc-ccCeee----
Confidence 9999999999999862 2689999999999998776632 45678999999999999999 476666
Q ss_pred CcceeecCCCCCCcCCccccCHhhHHHHhcccCCCC---CcEEEEecC
Q 002521 613 AKETTYDALNNTPCLLPSWISQASARQRRGRAGRVQ---PGQCYHLYP 657 (913)
Q Consensus 613 ~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~~---~G~c~~L~t 657 (913)
+...+-.+.+||+||++|.+ +|..|..-.
T Consensus 517 ----------------Te~aPidSLIQR~GRv~R~g~~~~~~~~v~~~ 548 (733)
T COG1203 517 ----------------TELAPIDSLIQRAGRVNRHGKKENGKIYVYND 548 (733)
T ss_pred ----------------ecCCCHHHHHHHHHHHhhcccccCCceeEeec
Confidence 22335567889999999996 566665533
No 106
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.77 E-value=2.6e-17 Score=196.00 Aligned_cols=107 Identities=22% Similarity=0.251 Sum_probs=94.6
Q ss_pred cCCCcEEEEcCChHHHHHHHHHHHcCCCCCCCCCeEEEEecCCCChHHHHHHhccCCCCccEEEEecchhhhcCCCC---
Q 002521 526 ECPGAVLVFMTGWEDISCLRDQLKSHPLLGDPNRVLLLTCHGSMPTSEQKFIFEKAPPNIRKIVLATNMAEASITIN--- 602 (913)
Q Consensus 526 ~~~g~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~g~~kVLVATniae~GIdIp--- 602 (913)
..+.++||||+++..++.++..|... ++....+|+++...|+..+..+++.|. |+||||+|+||+||+
T Consensus 438 ~~g~pvLI~t~si~~se~ls~~L~~~-------gi~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~ 508 (796)
T PRK12906 438 AKGQPVLVGTVAIESSERLSHLLDEA-------GIPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGP 508 (796)
T ss_pred hCCCCEEEEeCcHHHHHHHHHHHHHC-------CCCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCc
Confidence 35679999999999999999999986 677889999999888888888888886 999999999999994
Q ss_pred CeE-----EEEeCCCCcceeecCCCCCCcCCccccCHhhHHHHhcccCCC-CCcEEEEecChh
Q 002521 603 DIV-----FVVDCGKAKETTYDALNNTPCLLPSWISQASARQRRGRAGRV-QPGQCYHLYPRC 659 (913)
Q Consensus 603 ~v~-----~VId~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~-~~G~c~~L~t~~ 659 (913)
+|. +||++.+|. |...+.||+|||||. .||.+..+++-+
T Consensus 509 ~V~~~GGLhVI~te~pe------------------s~ri~~Ql~GRtGRqG~~G~s~~~~sle 553 (796)
T PRK12906 509 GVKELGGLAVIGTERHE------------------SRRIDNQLRGRSGRQGDPGSSRFYLSLE 553 (796)
T ss_pred chhhhCCcEEEeeecCC------------------cHHHHHHHhhhhccCCCCcceEEEEecc
Confidence 898 999977776 666889999999999 789988877654
No 107
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.77 E-value=1.2e-17 Score=193.75 Aligned_cols=364 Identities=15% Similarity=0.211 Sum_probs=201.2
Q ss_pred HHHHHcC-CeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHHHHHhCCCcccEeeeEEecc
Q 002521 259 LQAIARN-QVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVSAERGEPLGETVGYKVRLE 337 (913)
Q Consensus 259 l~~i~~~-~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv~~~~~~~~g~~vGy~v~~e 337 (913)
.+++.+| +.+++++.||+|||..+.++|. .++..+ ...+||+++-|++|..|.+..+...+.. +..+... .+
T Consensus 178 ~Eaf~~g~~raLlvMATGTGKTrTAiaii~-rL~r~~--~~KRVLFLaDR~~Lv~QA~~af~~~~P~--~~~~n~i--~~ 250 (875)
T COG4096 178 IEAFSKGQNRALLVMATGTGKTRTAIAIID-RLIKSG--WVKRVLFLADRNALVDQAYGAFEDFLPF--GTKMNKI--ED 250 (875)
T ss_pred HHHHhcCCceEEEEEecCCCcceeHHHHHH-HHHhcc--hhheeeEEechHHHHHHHHHHHHHhCCC--ccceeee--ec
Confidence 3444444 4688999999999977776654 344433 3457888889999999998888775432 2222111 11
Q ss_pred ccCCCCceEEEEecHHHHHHHhcC-C-----CCCCceEEEeccccccCcchHHHHHHHHHhCccCccceEEEeccccCHH
Q 002521 338 GMKGKNTHLLFCTSGILLRRLLSD-H-----NLNGVTHVFVDEIHERGMNEDFLLIVLKDLLPRRRDLRLILMSATLNAE 411 (913)
Q Consensus 338 ~~~~~~~~Ivv~T~g~Ll~~l~~~-~-----~L~~~s~IIIDEaHer~~~~d~ll~llk~ll~~~~~~kiIlmSATl~~~ 411 (913)
......++|.++|.+.+...+... . ....+++||||||| ||+..+.-.++ ..... -+++++||+..+
T Consensus 251 ~~~~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaH-Rgi~~~~~~I~-----dYFdA-~~~gLTATP~~~ 323 (875)
T COG4096 251 KKGDTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAH-RGIYSEWSSIL-----DYFDA-ATQGLTATPKET 323 (875)
T ss_pred ccCCcceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhh-hhHHhhhHHHH-----HHHHH-HHHhhccCcccc
Confidence 122235799999999998877654 1 45669999999999 88776654221 11111 245559998442
Q ss_pred ---HHHhhhCCCCeecc-------CCccccceeeehhhHHhhhcccccccccccchhhhhHHHHhhhhchhhhhhhHHHH
Q 002521 412 ---LFSNYFGGAPTIHI-------PGFTYPVQAHFLEDVLEMTGYKLTSLNQVDDYGQEKLWKTQRQLLPRKRKNQITAL 481 (913)
Q Consensus 412 ---~~~~yf~~~~~i~i-------~g~~~pv~~~yl~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 481 (913)
.-..||+|.|+..- .|...|-.+.-.+--....|+.+.....-.+. ..+.
T Consensus 324 ~d~~T~~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~serek~--------------------~g~~ 383 (875)
T COG4096 324 IDRSTYGFFNGEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGSEREKL--------------------QGEA 383 (875)
T ss_pred cccccccccCCCcceeecHHHHhhccccCCCCceEEeeeccccCcCcCccchhhhh--------------------hccc
Confidence 23357765554332 12222211111111111222222211100000 0000
Q ss_pred HHHHHhhccccccchhhhhhhccccccccchhhHHHHHHHHhhh--c--CCCcEEEEcCChHHHHHHHHHHHcCCCCCCC
Q 002521 482 VEDALHKSNFENYSSRARDSLASWTADCIGFNLIEAVLCHICRK--E--CPGAVLVFMTGWEDISCLRDQLKSHPLLGDP 557 (913)
Q Consensus 482 v~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~li~~ll~~i~~~--~--~~g~iLVF~~~~~~i~~l~~~L~~~~~~~~~ 557 (913)
+.. ....+... .......-....+.+...+.+.+.. . ..+++||||.+..|++.+...|..... +.
T Consensus 384 i~~--dd~~~~~~------d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~yp--e~ 453 (875)
T COG4096 384 IDE--DDQNFEAR------DFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYP--EY 453 (875)
T ss_pred cCc--cccccccc------ccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCc--cc
Confidence 000 00000000 0000000111223444555555554 2 257999999999999999999987522 22
Q ss_pred CCeEEEEecCCCChHHHHHHhccCC--CCccEEEEecchhhhcCCCCCeEEEEeCCCCcceeecCCCCCCcCCccccCHh
Q 002521 558 NRVLLLTCHGSMPTSEQKFIFEKAP--PNIRKIVLATNMAEASITINDIVFVVDCGKAKETTYDALNNTPCLLPSWISQA 635 (913)
Q Consensus 558 ~~~~v~~lHs~l~~~er~~v~~~f~--~g~~kVLVATniae~GIdIp~v~~VId~g~~k~~~yd~~~~~~~l~~~~iSka 635 (913)
.+--+..+.|.-...+ .. ++.|. +.--+|.++.+++.+|||+|.|..+|..-..+ |+.
T Consensus 454 ~~~~a~~IT~d~~~~q-~~-Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF~r~Vr------------------Skt 513 (875)
T COG4096 454 NGRYAMKITGDAEQAQ-AL-IDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVFDRKVR------------------SKT 513 (875)
T ss_pred cCceEEEEeccchhhH-HH-HHHHHhcCCCCceEEehhhhhcCCCchheeeeeehhhhh------------------hHH
Confidence 2334555566543332 22 33333 33458999999999999999998887644443 899
Q ss_pred hHHHHhcccCCCCC--c------EEEEecCh---hhHHhhhhCCCCcccccChhhHHHHHhh
Q 002521 636 SARQRRGRAGRVQP--G------QCYHLYPR---CVYEAFAEYQLPELLRTPLNSLCLQIKS 686 (913)
Q Consensus 636 ~~~QR~GRAGR~~~--G------~c~~L~t~---~~~~~l~~~~~pEi~r~~L~~~~L~lk~ 686 (913)
-|+||+||+-|..+ | ..|.+|.- -.|-.+.....++-.+.+|+.=++....
T Consensus 514 kF~QMvGRGTRl~~~~~~~~~dK~~F~ifDf~~~~~~~~~~~~~~e~~~~~~l~~rLF~~~~ 575 (875)
T COG4096 514 KFKQMVGRGTRLCPDLGGPEQDKEFFTIFDFVDNTEYFEMDPEMREGRVRVSLEQRLFADRL 575 (875)
T ss_pred HHHHHhcCccccCccccCccccceeEEEEEhhhhhhhhccCcccccccccchHHHHHhhhhh
Confidence 99999999999844 2 23445432 1222344444455555555554443333
No 108
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.75 E-value=8.2e-17 Score=187.11 Aligned_cols=164 Identities=24% Similarity=0.234 Sum_probs=114.4
Q ss_pred CCcHHHHHHHHHHHHcCCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHHHHHhCCC-cc
Q 002521 249 LPSFKEKERLLQAIARNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVSAERGEP-LG 327 (913)
Q Consensus 249 lP~~~~q~~il~~i~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv~~~~~~~-~g 327 (913)
+--...|.+.+..+..+..++|+|||.+|||++-+-++ |..++... ...||+..|+++|+.|++..+...++.. +-
T Consensus 510 F~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfisfY~i-EKVLResD--~~VVIyvaPtKaLVnQvsa~VyaRF~~~t~~ 586 (1330)
T KOG0949|consen 510 FCPDEWQRELLDSVDRNESAVIVAPTSAGKTFISFYAI-EKVLRESD--SDVVIYVAPTKALVNQVSANVYARFDTKTFL 586 (1330)
T ss_pred cCCcHHHHHHhhhhhcccceEEEeeccCCceeccHHHH-HHHHhhcC--CCEEEEecchHHHhhhhhHHHHHhhccCccc
Confidence 44467899999999999999999999999998766544 55544322 2367788899999999988876655322 11
Q ss_pred cE---eeeEEeccccCCCCceEEEEecHHHHHHHhcCC----CCCCceEEEeccccccCcchHHHHHHHHHhCccCccce
Q 002521 328 ET---VGYKVRLEGMKGKNTHLLFCTSGILLRRLLSDH----NLNGVTHVFVDEIHERGMNEDFLLIVLKDLLPRRRDLR 400 (913)
Q Consensus 328 ~~---vGy~v~~e~~~~~~~~Ivv~T~g~Ll~~l~~~~----~L~~~s~IIIDEaHer~~~~d~ll~llk~ll~~~~~~k 400 (913)
.. .|--.+--+...-+++|+|+-|+.|-..|.+.+ +...+.+||+||+|.-|-..|-++.. ++ ...-.+.
T Consensus 587 rg~sl~g~ltqEYsinp~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~E--ql-l~li~CP 663 (1330)
T KOG0949|consen 587 RGVSLLGDLTQEYSINPWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWE--QL-LLLIPCP 663 (1330)
T ss_pred cchhhHhhhhHHhcCCchhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHH--HH-HHhcCCC
Confidence 11 111111111223468999999999988887643 78999999999999766544433222 11 1112346
Q ss_pred EEEecccc-CHHHHHhhhC
Q 002521 401 LILMSATL-NAELFSNYFG 418 (913)
Q Consensus 401 iIlmSATl-~~~~~~~yf~ 418 (913)
+|++|||+ |++.|..|++
T Consensus 664 ~L~LSATigN~~l~qkWln 682 (1330)
T KOG0949|consen 664 FLVLSATIGNPNLFQKWLN 682 (1330)
T ss_pred eeEEecccCCHHHHHHHHH
Confidence 99999999 8899999986
No 109
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.74 E-value=4.3e-17 Score=194.84 Aligned_cols=105 Identities=23% Similarity=0.218 Sum_probs=85.2
Q ss_pred cCCCcEEEEcCChHHHHHHHHHHHcCCCCCCCCCeEEEEecCCCChHHHHHHhccCCCCccEEEEecchhhhcCCCCCe-
Q 002521 526 ECPGAVLVFMTGWEDISCLRDQLKSHPLLGDPNRVLLLTCHGSMPTSEQKFIFEKAPPNIRKIVLATNMAEASITINDI- 604 (913)
Q Consensus 526 ~~~g~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~g~~kVLVATniae~GIdIp~v- 604 (913)
..+.++||||++++.++.++..|... ++....+||. +.+|+..+..|+.+...|+||||+|+||+||+==
T Consensus 428 ~~grpVLIft~Si~~se~Ls~~L~~~-------gi~~~vLnak--q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~LgG 498 (830)
T PRK12904 428 KKGQPVLVGTVSIEKSELLSKLLKKA-------GIPHNVLNAK--NHEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGG 498 (830)
T ss_pred hcCCCEEEEeCcHHHHHHHHHHHHHC-------CCceEeccCc--hHHHHHHHHHhcCCCceEEEecccccCCcCccCCC
Confidence 45679999999999999999999986 7788899996 7789999999999999999999999999999621
Q ss_pred -------------------------------------EEEEeCCCCcceeecCCCCCCcCCccccCHhhHHHHhcccCCC
Q 002521 605 -------------------------------------VFVVDCGKAKETTYDALNNTPCLLPSWISQASARQRRGRAGRV 647 (913)
Q Consensus 605 -------------------------------------~~VId~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~ 647 (913)
-+||-+..+. |+--=.|-+|||||.
T Consensus 499 n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTerhe------------------srRid~QlrGRagRQ 560 (830)
T PRK12904 499 NPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTERHE------------------SRRIDNQLRGRSGRQ 560 (830)
T ss_pred chhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEecccCc------------------hHHHHHHhhcccccC
Confidence 3455444444 444446999999999
Q ss_pred -CCcEEEEecC
Q 002521 648 -QPGQCYHLYP 657 (913)
Q Consensus 648 -~~G~c~~L~t 657 (913)
.||.+-.+.+
T Consensus 561 GdpGss~f~lS 571 (830)
T PRK12904 561 GDPGSSRFYLS 571 (830)
T ss_pred CCCCceeEEEE
Confidence 6887655544
No 110
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.74 E-value=2.8e-17 Score=165.14 Aligned_cols=157 Identities=22% Similarity=0.261 Sum_probs=111.9
Q ss_pred HHHHHHHHHHHcCCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHHHHHhCCCcccEeee
Q 002521 253 KEKERLLQAIARNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVSAERGEPLGETVGY 332 (913)
Q Consensus 253 ~~q~~il~~i~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv~~~~~~~~g~~vGy 332 (913)
+.|.++++.+.+++++++.||||+|||+++..+++..+.+. + ...++++.|+++++.|+++++...++..-.....+
T Consensus 2 ~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~-~--~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~ 78 (169)
T PF00270_consen 2 PLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEG-K--DARVLIIVPTRALAEQQFERLRKFFSNTNVRVVLL 78 (169)
T ss_dssp HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTT-S--SSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEEE
T ss_pred HHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccC-C--CceEEEEeecccccccccccccccccccccccccc
Confidence 57999999999999999999999999999999999877543 2 23666666999999999999988766521111111
Q ss_pred EE----e--ccccCCCCceEEEEecHHHHHHHhcCC-CCCCceEEEeccccccCcc--hHHHHHHHHHhCccCccceEEE
Q 002521 333 KV----R--LEGMKGKNTHLLFCTSGILLRRLLSDH-NLNGVTHVFVDEIHERGMN--EDFLLIVLKDLLPRRRDLRLIL 403 (913)
Q Consensus 333 ~v----~--~e~~~~~~~~Ivv~T~g~Ll~~l~~~~-~L~~~s~IIIDEaHer~~~--~d~ll~llk~ll~~~~~~kiIl 403 (913)
.- . .......+++|+|+||+.|++.+.... .+.++++|||||+|..+.. .+.+..+++. +...++.++|+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~-~~~~~~~~~i~ 157 (169)
T PF00270_consen 79 HGGQSISEDQREVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDETFRAMLKSILRR-LKRFKNIQIIL 157 (169)
T ss_dssp STTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHTTHHHHHHHHHHH-SHTTTTSEEEE
T ss_pred cccccccccccccccccccccccCcchhhccccccccccccceeeccCcccccccccHHHHHHHHHHH-hcCCCCCcEEE
Confidence 10 0 001112458999999999999997643 5666999999999965432 2223333333 33334679999
Q ss_pred eccccCHHHHH
Q 002521 404 MSATLNAELFS 414 (913)
Q Consensus 404 mSATl~~~~~~ 414 (913)
||||++ ..+.
T Consensus 158 ~SAT~~-~~~~ 167 (169)
T PF00270_consen 158 LSATLP-SNVE 167 (169)
T ss_dssp EESSST-HHHH
T ss_pred EeeCCC-hhHh
Confidence 999998 5443
No 111
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.72 E-value=1.1e-16 Score=189.90 Aligned_cols=354 Identities=17% Similarity=0.197 Sum_probs=213.4
Q ss_pred CCCcHHHHHHHHHHHHcC----CeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHHHHHhC
Q 002521 248 SLPSFKEKERLLQAIARN----QVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVSAERG 323 (913)
Q Consensus 248 ~lP~~~~q~~il~~i~~~----~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv~~~~~ 323 (913)
.+.....|+.+.+.|... ...++.|.||||||.++...|.+.+ .+|+.+.|+| |-..|..|+.++|...+|
T Consensus 196 ~~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L---~~GkqvLvLV--PEI~Ltpq~~~rf~~rFg 270 (730)
T COG1198 196 WLALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVL---AQGKQVLVLV--PEIALTPQLLARFKARFG 270 (730)
T ss_pred ccccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHH---HcCCEEEEEe--ccccchHHHHHHHHHHhC
Confidence 456677788888888665 7899999999999999999888766 3455666666 999999999999999999
Q ss_pred CCcccEeeeE---Ee---ccccCCCCceEEEEecHHHHHHHhcCCCCCCceEEEeccccccCcchHH-------HHHHHH
Q 002521 324 EPLGETVGYK---VR---LEGMKGKNTHLLFCTSGILLRRLLSDHNLNGVTHVFVDEIHERGMNEDF-------LLIVLK 390 (913)
Q Consensus 324 ~~~g~~vGy~---v~---~e~~~~~~~~Ivv~T~g~Ll~~l~~~~~L~~~s~IIIDEaHer~~~~d~-------ll~llk 390 (913)
.+++...+.- .+ +....++..+|+++|-..++- .+.++++|||||-|+-++..+- -.+++
T Consensus 271 ~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAlF~------Pf~~LGLIIvDEEHD~sYKq~~~prYhARdvA~~- 343 (730)
T COG1198 271 AKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSALFL------PFKNLGLIIVDEEHDSSYKQEDGPRYHARDVAVL- 343 (730)
T ss_pred CChhhhcccCChHHHHHHHHHHhcCCceEEEEechhhcC------chhhccEEEEeccccccccCCcCCCcCHHHHHHH-
Confidence 7765433211 11 223345778999999876653 6789999999999964332211 01111
Q ss_pred HhCccCccceEEEeccccCHHHHHhhhCC-CCeeccCCccc---cceeeehhhHHhhhcccccccccccchhhhhHHHHh
Q 002521 391 DLLPRRRDLRLILMSATLNAELFSNYFGG-APTIHIPGFTY---PVQAHFLEDVLEMTGYKLTSLNQVDDYGQEKLWKTQ 466 (913)
Q Consensus 391 ~ll~~~~~~kiIlmSATl~~~~~~~yf~~-~~~i~i~g~~~---pv~~~yl~di~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (913)
.....+..+|+-|||+..+.+.+-..+ ...+.+..|.. +-.+..++. .++.....
T Consensus 344 --Ra~~~~~pvvLgSATPSLES~~~~~~g~y~~~~L~~R~~~a~~p~v~iiDm----r~e~~~~~--------------- 402 (730)
T COG1198 344 --RAKKENAPVVLGSATPSLESYANAESGKYKLLRLTNRAGRARLPRVEIIDM----RKEPLETG--------------- 402 (730)
T ss_pred --HHHHhCCCEEEecCCCCHHHHHhhhcCceEEEEccccccccCCCcceEEec----cccccccC---------------
Confidence 122345689999999998876665443 23333433322 222222221 00000000
Q ss_pred hhhchhhhhhhHHHHHHHHHhhc-------cccccchhhhhh-------hccccccccchhhHHHHHHHHhhhcC-----
Q 002521 467 RQLLPRKRKNQITALVEDALHKS-------NFENYSSRARDS-------LASWTADCIGFNLIEAVLCHICRKEC----- 527 (913)
Q Consensus 467 ~~~~~~~~~~~i~~~v~~~l~~~-------~~~~~~~~~~~~-------l~~~~~~~~~~~li~~ll~~i~~~~~----- 527 (913)
......+.+.+++.+... +..+|.+..... ..+.+....-......+.||.|....
T Consensus 403 -----~~lS~~Ll~~i~~~l~~geQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~ 477 (730)
T COG1198 403 -----RSLSPALLEAIRKTLERGEQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQS 477 (730)
T ss_pred -----ccCCHHHHHHHHHHHhcCCeEEEEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCC
Confidence 001112223333333322 222232211111 11111111111222456677775431
Q ss_pred ----CCcEEE-EcCChHHHHHHHHHHHcCCCCCCCCCeEEEEecCCCChHH--HHHHhccCCCCccEEEEecchhhhcCC
Q 002521 528 ----PGAVLV-FMTGWEDISCLRDQLKSHPLLGDPNRVLLLTCHGSMPTSE--QKFIFEKAPPNIRKIVLATNMAEASIT 600 (913)
Q Consensus 528 ----~g~iLV-F~~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lHs~l~~~e--r~~v~~~f~~g~~kVLVATniae~GId 600 (913)
++..|+ |..|.+ ++.+.|.... ++..++.+.++.+... -+..+..|.+|+..|||.|.+++.|.|
T Consensus 478 Cp~Cgs~~L~~~G~Gte---rieeeL~~~F-----P~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~ 549 (730)
T COG1198 478 CPECGSEHLRAVGPGTE---RIEEELKRLF-----PGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHD 549 (730)
T ss_pred CCCCCCCeeEEecccHH---HHHHHHHHHC-----CCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCC
Confidence 233344 445544 4555555542 3566888888776533 467789999999999999999999999
Q ss_pred CCCeEEE--EeCCCCcceeecCCCCCCcCCccccCHhhHHHHhcccCCC-CCcEEEEe
Q 002521 601 INDIVFV--VDCGKAKETTYDALNNTPCLLPSWISQASARQRRGRAGRV-QPGQCYHL 655 (913)
Q Consensus 601 Ip~v~~V--Id~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~-~~G~c~~L 655 (913)
+|+++.| +| -|...+...|....-+-.-+.|-+|||||. .+|..+.=
T Consensus 550 fp~vtLVgvl~--------aD~~L~~~DfRA~Er~fqll~QvaGRAgR~~~~G~VvIQ 599 (730)
T COG1198 550 FPNVTLVGVLD--------ADTGLGSPDFRASERTFQLLMQVAGRAGRAGKPGEVVIQ 599 (730)
T ss_pred cccceEEEEEe--------chhhhcCCCcchHHHHHHHHHHHHhhhccCCCCCeEEEE
Confidence 9999665 45 333444455554444556778999999999 88876543
No 112
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.72 E-value=1.3e-16 Score=165.68 Aligned_cols=156 Identities=22% Similarity=0.186 Sum_probs=110.1
Q ss_pred cHHHHHHHHHHHHcCCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHHHHHhCCCcccEe
Q 002521 251 SFKEKERLLQAIARNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVSAERGEPLGETV 330 (913)
Q Consensus 251 ~~~~q~~il~~i~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv~~~~~~~~g~~v 330 (913)
.+.+|.++++.+..++++++++|||+|||..+.+++++.+.........+++++.|+++|+.|+++.+...... .+..+
T Consensus 22 ~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~L~~q~~~~~~~~~~~-~~~~~ 100 (203)
T cd00268 22 PTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELALQIAEVARKLGKH-TNLKV 100 (203)
T ss_pred CCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHHHHHHHHHHHHHHhcc-CCceE
Confidence 57789999999999999999999999999999999998876652123346666679999999999888765432 12222
Q ss_pred eeEEec------cccCCCCceEEEEecHHHHHHHhcCC-CCCCceEEEeccccccC-c-chHHHHHHHHHhCccCccceE
Q 002521 331 GYKVRL------EGMKGKNTHLLFCTSGILLRRLLSDH-NLNGVTHVFVDEIHERG-M-NEDFLLIVLKDLLPRRRDLRL 401 (913)
Q Consensus 331 Gy~v~~------e~~~~~~~~Ivv~T~g~Ll~~l~~~~-~L~~~s~IIIDEaHer~-~-~~d~ll~llk~ll~~~~~~ki 401 (913)
+..... ......+.+|+|+||+.|++.+.... .+.++++|||||+|+.. . ....+..+.+. ...+.++
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~~~~~~~~~~~~~~~~---l~~~~~~ 177 (203)
T cd00268 101 VVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRMLDMGFEDQIREILKL---LPKDRQT 177 (203)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHhhccChHHHHHHHHHh---CCcccEE
Confidence 211110 01112367999999999999887654 78899999999999643 1 11222222222 2346799
Q ss_pred EEeccccCH
Q 002521 402 ILMSATLNA 410 (913)
Q Consensus 402 IlmSATl~~ 410 (913)
++||||++.
T Consensus 178 ~~~SAT~~~ 186 (203)
T cd00268 178 LLFSATMPK 186 (203)
T ss_pred EEEeccCCH
Confidence 999999974
No 113
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.71 E-value=4.6e-16 Score=188.31 Aligned_cols=350 Identities=13% Similarity=0.111 Sum_probs=175.6
Q ss_pred cCCCcHHHHHHHHH---HHHc------CCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHH
Q 002521 247 KSLPSFKEKERLLQ---AIAR------NQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSER 317 (913)
Q Consensus 247 ~~lP~~~~q~~il~---~i~~------~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~r 317 (913)
+..|.+.|..++-. .+.+ .+..+|..+||||||..+...+.. ++... ...+||+++||+.|..|+.+.
T Consensus 236 k~~~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~-l~~~~--~~~~vl~lvdR~~L~~Q~~~~ 312 (667)
T TIGR00348 236 KPYQRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARK-ALELL--KNPKVFFVVDRRELDYQLMKE 312 (667)
T ss_pred eeehHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHH-HHhhc--CCCeEEEEECcHHHHHHHHHH
Confidence 44555555444333 3333 357899999999999777655543 22222 234677777999999999999
Q ss_pred HHHHhCCCcccEeeeEEec-cccCCCCceEEEEecHHHHHHHhcC---CCCCCc-eEEEeccccccCcchHHHHHHHHHh
Q 002521 318 VSAERGEPLGETVGYKVRL-EGMKGKNTHLLFCTSGILLRRLLSD---HNLNGV-THVFVDEIHERGMNEDFLLIVLKDL 392 (913)
Q Consensus 318 v~~~~~~~~g~~vGy~v~~-e~~~~~~~~Ivv~T~g~Ll~~l~~~---~~L~~~-s~IIIDEaHer~~~~d~ll~llk~l 392 (913)
+........ ..++....+ .........|+|+|.+.|.+.+... ...... .+||+|||| |+....+... ++.
T Consensus 313 f~~~~~~~~-~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaH-rs~~~~~~~~-l~~- 388 (667)
T TIGR00348 313 FQSLQKDCA-ERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAH-RSQYGELAKN-LKK- 388 (667)
T ss_pred HHhhCCCCC-cccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCc-cccchHHHHH-HHh-
Confidence 977542211 111110001 1112234689999999998654321 111111 389999999 6555443322 222
Q ss_pred CccCccceEEEeccccCH----HHHHhhhC---CCCeecc-------CCccccceeeehhhHHhhhcccccccccccchh
Q 002521 393 LPRRRDLRLILMSATLNA----ELFSNYFG---GAPTIHI-------PGFTYPVQAHFLEDVLEMTGYKLTSLNQVDDYG 458 (913)
Q Consensus 393 l~~~~~~kiIlmSATl~~----~~~~~yf~---~~~~i~i-------~g~~~pv~~~yl~di~~~~~~~~~~~~~~~~~~ 458 (913)
..|+...|+||||+-. ..+ ..|+ +.++... .|...|+ .|....... ..++..
T Consensus 389 --~~p~a~~lGfTaTP~~~~d~~t~-~~f~~~fg~~i~~Y~~~~AI~dG~~~~i--~Y~~~~~~~---------~~~~~~ 454 (667)
T TIGR00348 389 --ALKNASFFGFTGTPIFKKDRDTS-LTFAYVFGRYLHRYFITDAIRDGLTVKI--DYEDRLPED---------HLDRKK 454 (667)
T ss_pred --hCCCCcEEEEeCCCccccccccc-ccccCCCCCeEEEeeHHHHhhcCCeeeE--EEEecchhh---------ccChHH
Confidence 2355689999999932 111 2222 1111110 1322222 221110000 000000
Q ss_pred hhhHHHHhhhhchhhhhhhHHHHHHHHHhhccccccchhhhhhhccccc-cccchhhHHHHHHHHhhhc--CCCcEEEEc
Q 002521 459 QEKLWKTQRQLLPRKRKNQITALVEDALHKSNFENYSSRARDSLASWTA-DCIGFNLIEAVLCHICRKE--CPGAVLVFM 535 (913)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~i~~~v~~~l~~~~~~~~~~~~~~~l~~~~~-~~~~~~li~~ll~~i~~~~--~~g~iLVF~ 535 (913)
.+.....................++...... ..+.. ...-......++.|..... .+++.+|||
T Consensus 455 l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------------~~~~~~~~~~~~ia~~i~~h~~~~~~~~~~kamvv~ 521 (667)
T TIGR00348 455 LDAFFDEIFELLPERIREITKESLKEKLQKT-------------KKILFNEDRLESIAKDIAEHYAKFKELFKFKAMVVA 521 (667)
T ss_pred HHHHHHHHHHhhhccccHHHHHHHHHHHHHH-------------HhhhcChHHHHHHHHHHHHHHHHhhhcccCceeEEE
Confidence 0000000000000000000000011000000 00000 0000112223344443322 258999999
Q ss_pred CChHHHHHHHHHHHcCCCCCCCCCeEEEEecCCCChH---------------------HHHHHhccCCC-CccEEEEecc
Q 002521 536 TGWEDISCLRDQLKSHPLLGDPNRVLLLTCHGSMPTS---------------------EQKFIFEKAPP-NIRKIVLATN 593 (913)
Q Consensus 536 ~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lHs~l~~~---------------------er~~v~~~f~~-g~~kVLVATn 593 (913)
.++.+|..+++.|.... ....+...+.++++.+.+ ....+.+.|++ +..+|||.++
T Consensus 522 ~sr~~a~~~~~~l~~~~--~~~~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ilIVvd 599 (667)
T TIGR00348 522 ISRYACVEEKNALDEEL--NEKFEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPKLLIVVD 599 (667)
T ss_pred ecHHHHHHHHHHHHhhc--ccccCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCceEEEEEc
Confidence 99999999999887641 111012344445543322 12367778865 6789999999
Q ss_pred hhhhcCCCCCeEEEEeCCCCcceeecCCCCCCcCCccccCHhhHHHHhcccCCC-CCcE
Q 002521 594 MAEASITINDIVFVVDCGKAKETTYDALNNTPCLLPSWISQASARQRRGRAGRV-QPGQ 651 (913)
Q Consensus 594 iae~GIdIp~v~~VId~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~-~~G~ 651 (913)
++-+|+|.|.+.+++- |.+ +.-..++|.+||+-|. .+|+
T Consensus 600 mllTGFDaP~l~tLyl---------dKp----------lk~h~LlQai~R~nR~~~~~K 639 (667)
T TIGR00348 600 MLLTGFDAPILNTLYL---------DKP----------LKYHGLLQAIARTNRIDGKDK 639 (667)
T ss_pred ccccccCCCccceEEE---------ecc----------ccccHHHHHHHHhccccCCCC
Confidence 9999999999977663 211 1222567999999995 5544
No 114
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.71 E-value=5.6e-16 Score=182.40 Aligned_cols=296 Identities=22% Similarity=0.243 Sum_probs=195.5
Q ss_pred HHHHHHHhhcCchhhhHHhhhcCCCcHHHHHHHHHHHHcCCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcc
Q 002521 226 MRNMQRAWQESPEGNKMLDFRKSLPSFKEKERLLQAIARNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQ 305 (913)
Q Consensus 226 ~~~~~~~~~~~~~~~~l~~~r~~lP~~~~q~~il~~i~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~q 305 (913)
+......|..-.++.++++.....+.|..|.-+...+..|+..-+.||||.||||-...+.+-. ..+|+.+.|++
T Consensus 58 ~~~~~~~~~e~e~~~~fF~k~~G~~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~sl~~---a~kgkr~yii~-- 132 (1187)
T COG1110 58 LEFFRRYLWEYEEFEEFFKKATGFRPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMSLYL---AKKGKRVYIIV-- 132 (1187)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCceEEEcCCCCchhHHHHHHHHHH---HhcCCeEEEEe--
Confidence 3444445556667778888888889999999999999999999999999999998776555433 24566667777
Q ss_pred hhHHHHHHHHHHHHHHhCC--CcccEeeeEEec---------cccCCCCceEEEEecHHHHHHHhcCCCCCCceEEEecc
Q 002521 306 PRRISAMAVSERVSAERGE--PLGETVGYKVRL---------EGMKGKNTHLLFCTSGILLRRLLSDHNLNGVTHVFVDE 374 (913)
Q Consensus 306 Prr~La~qva~rv~~~~~~--~~g~~vGy~v~~---------e~~~~~~~~Ivv~T~g~Ll~~l~~~~~L~~~s~IIIDE 374 (913)
||+.|+.|+++++.+.... .+...+.|.... +...+++.+|+|+|.+.|.+.+..-.. -++++|+||+
T Consensus 133 PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L~~-~kFdfifVDD 211 (1187)
T COG1110 133 PTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEELSK-LKFDFIFVDD 211 (1187)
T ss_pred cCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHhcc-cCCCEEEEcc
Confidence 9999999999999775421 222333344332 234456799999999999877643222 3699999999
Q ss_pred ccc---cCcchHHHHHH----------------HHHhCc----------------------cCccceEEEeccccCH---
Q 002521 375 IHE---RGMNEDFLLIV----------------LKDLLP----------------------RRRDLRLILMSATLNA--- 410 (913)
Q Consensus 375 aHe---r~~~~d~ll~l----------------lk~ll~----------------------~~~~~kiIlmSATl~~--- 410 (913)
+|. .+-+.|-++.+ ++..+. ....-.+|.+|||..+
T Consensus 212 VDA~LkaskNvDriL~LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~ 291 (1187)
T COG1110 212 VDAILKASKNVDRLLRLLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGS 291 (1187)
T ss_pred HHHHHhccccHHHHHHHcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCc
Confidence 992 22233322211 111111 1123478999999844
Q ss_pred --HHHHhhhCCCCeeccCCccccceeeehhhHHhhhcccccccccccchhhhhHHHHhhhhchhhhhhhHHHHHHHHHhh
Q 002521 411 --ELFSNYFGGAPTIHIPGFTYPVQAHFLEDVLEMTGYKLTSLNQVDDYGQEKLWKTQRQLLPRKRKNQITALVEDALHK 488 (913)
Q Consensus 411 --~~~~~yf~~~~~i~i~g~~~pv~~~yl~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~~l~~ 488 (913)
..|...++-. +.+. ..++.++ .|.|. .
T Consensus 292 R~~LfReLlgFe----vG~~-----~~~LRNI-------------vD~y~----------------------------~- 320 (1187)
T COG1110 292 RLKLFRELLGFE----VGSG-----GEGLRNI-------------VDIYV----------------------------E- 320 (1187)
T ss_pred hHHHHHHHhCCc----cCcc-----chhhhhe-------------eeeec----------------------------c-
Confidence 2455555410 0000 0000000 00000 0
Q ss_pred ccccccchhhhhhhccccccccchhhHHHHHHHHhhhcCCCcEEEEcCC---hHHHHHHHHHHHcCCCCCCCCCeEEEEe
Q 002521 489 SNFENYSSRARDSLASWTADCIGFNLIEAVLCHICRKECPGAVLVFMTG---WEDISCLRDQLKSHPLLGDPNRVLLLTC 565 (913)
Q Consensus 489 ~~~~~~~~~~~~~l~~~~~~~~~~~li~~ll~~i~~~~~~g~iLVF~~~---~~~i~~l~~~L~~~~~~~~~~~~~v~~l 565 (913)
. .-+.. +..+.+.. +...|||++. ++.++.+++.|+.+ ++.+..+
T Consensus 321 -------------------~----~~~e~-~~elvk~l-G~GgLIfV~~d~G~e~aeel~e~Lr~~-------Gi~a~~~ 368 (1187)
T COG1110 321 -------------------S----ESLEK-VVELVKKL-GDGGLIFVPIDYGREKAEELAEYLRSH-------GINAELI 368 (1187)
T ss_pred -------------------C----ccHHH-HHHHHHHh-CCCeEEEEEcHHhHHHHHHHHHHHHhc-------CceEEEe
Confidence 0 00011 11222222 3348999998 99999999999997 8889988
Q ss_pred cCCCChHHHHHHhccCCCCccEEEEec----chhhhcCCCCCe-EEEEeCCCCcc
Q 002521 566 HGSMPTSEQKFIFEKAPPNIRKIVLAT----NMAEASITINDI-VFVVDCGKAKE 615 (913)
Q Consensus 566 Hs~l~~~er~~v~~~f~~g~~kVLVAT----niae~GIdIp~v-~~VId~g~~k~ 615 (913)
|+. .++.++.|..|+++|+|.. +++-+|||+|.. +|+|.+|.||.
T Consensus 369 ~a~-----~~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvPk~ 418 (1187)
T COG1110 369 HAE-----KEEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVPKF 418 (1187)
T ss_pred ecc-----chhhhhhhccCceeEEEEecccccceeecCCchhheeEEEEecCCce
Confidence 873 2678899999999999875 589999999966 99999999964
No 115
>PF04408 HA2: Helicase associated domain (HA2); InterPro: IPR007502 This presumed domain is about 90 amino acid residues in length. It is found as a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding.; GO: 0004386 helicase activity; PDB: 3I4U_A 2XAU_B 3KX2_B.
Probab=99.69 E-value=3.1e-17 Score=150.72 Aligned_cols=92 Identities=50% Similarity=0.819 Sum_probs=68.2
Q ss_pred HHHHHHHHcCCCCCCCCcccccccccccCCChHHHHHHHHhhhccChHHHHHHHhhccCCCCCcCChhhHHHHH--HHhc
Q 002521 710 NAVDFLKRIGALDEKENLTNLGKFLSMLPVDPKLGKMLVMGAIFRCFDPVLTIVSGLSVRDPFLLPQEKKNLAE--IAKS 787 (913)
Q Consensus 710 ~al~~L~~~gald~~~~lT~lG~~ls~lpl~p~~~k~ll~~~~~~cl~~~l~i~a~ls~~~~f~~p~~~~~~~~--~~~~ 787 (913)
+|++.|+.+||||++++||++|+.|+.||++|++||||+.|+.++|++++++|||+|++++||..|.++++..+ ..+.
T Consensus 1 ~A~~~L~~Lgald~~~~lT~lG~~~~~lPl~p~~a~~Ll~~~~~~~~~~~~~iaa~ls~~~~f~~~~~~~~~~~~~~~~~ 80 (102)
T PF04408_consen 1 KALELLKSLGALDENGNLTPLGRKMSQLPLDPRLAKMLLYGIQFGCLDEALIIAAILSVRSPFINPDDKEENAEQDNAKK 80 (102)
T ss_dssp -HHHHHHHTTSB-TTS-B-HHHHHHTTSSS-HHHHHHHHHHHHCT-HHHHHHHHHHHTSS--B---CCGHHHHHH--HHH
T ss_pred CHHHHHHHCCCCCCCCCcCHHHHHHHHCCCchHhHhHhhhccccccHHHHHHHHHHHcCCCcccCccHHHHHHHHHHHHH
Confidence 48899999999999999999999999999999999999999999999999999999999999999865443322 2333
Q ss_pred cc--------CCCChhhHHHHH
Q 002521 788 RF--------SAKDYSDHMALV 801 (913)
Q Consensus 788 ~~--------~~~~~sDhl~ll 801 (913)
+| ..+..|||++++
T Consensus 81 ~~~~~~~~~~~~~~~sDhltlL 102 (102)
T PF04408_consen 81 KFRIKQARKKFSDDESDHLTLL 102 (102)
T ss_dssp TT----------BTTBHHHHHH
T ss_pred HhhhhhcccccCCCCCCHHhcC
Confidence 33 237889999986
No 116
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.68 E-value=3.1e-15 Score=178.60 Aligned_cols=123 Identities=18% Similarity=0.118 Sum_probs=84.8
Q ss_pred CCCcHHHHHHHHHHHHcCCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHHHHHhCCCcc
Q 002521 248 SLPSFKEKERLLQAIARNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVSAERGEPLG 327 (913)
Q Consensus 248 ~lP~~~~q~~il~~i~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv~~~~~~~~g 327 (913)
.+-...+--+++-.+.=++--|..++||.|||+++.++++...+. |.. |.|++|++.||.+.++.+...+.. +|
T Consensus 78 ~lgm~~ydVQliGgl~L~~G~IaEm~TGEGKTL~a~lp~~l~al~---g~~--VhIvT~ndyLA~RD~e~m~~l~~~-lG 151 (908)
T PRK13107 78 VFEMRHFDVQLLGGMVLDSNRIAEMRTGEGKTLTATLPAYLNALT---GKG--VHVITVNDYLARRDAENNRPLFEF-LG 151 (908)
T ss_pred HhCCCcCchHHhcchHhcCCccccccCCCCchHHHHHHHHHHHhc---CCC--EEEEeCCHHHHHHHHHHHHHHHHh-cC
Confidence 333333334466666556666888999999999999998876542 333 444559999999999888765433 45
Q ss_pred cEeeeEEe----ccccCCCCceEEEEecHHH-HHHHhcCC-------CCCCceEEEecccc
Q 002521 328 ETVGYKVR----LEGMKGKNTHLLFCTSGIL-LRRLLSDH-------NLNGVTHVFVDEIH 376 (913)
Q Consensus 328 ~~vGy~v~----~e~~~~~~~~Ivv~T~g~L-l~~l~~~~-------~L~~~s~IIIDEaH 376 (913)
..||.... .+....-.++|+|+|++.| ++.|..+- ....+.++||||||
T Consensus 152 lsv~~i~~~~~~~~r~~~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvD 212 (908)
T PRK13107 152 LTVGINVAGLGQQEKKAAYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVD 212 (908)
T ss_pred CeEEEecCCCCHHHHHhcCCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchh
Confidence 55553322 1222223689999999999 88776552 23778999999999
No 117
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.66 E-value=8e-15 Score=175.25 Aligned_cols=127 Identities=17% Similarity=0.112 Sum_probs=93.9
Q ss_pred hhcCCC--cHHHHHHHHHHHHcCCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHHHHHh
Q 002521 245 FRKSLP--SFKEKERLLQAIARNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVSAER 322 (913)
Q Consensus 245 ~r~~lP--~~~~q~~il~~i~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv~~~~ 322 (913)
.....| ..++|.+++..+..++++|..++||+|||+++.++++..++.. .. +++++|+++||.|.++.+....
T Consensus 85 ~G~~~p~~~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~g---~~--v~IVTpTrELA~Qdae~m~~L~ 159 (970)
T PRK12899 85 SGYHQQWDMVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALTG---KP--VHLVTVNDYLAQRDCEWVGSVL 159 (970)
T ss_pred ccccCCCCCChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhhc---CC--eEEEeCCHHHHHHHHHHHHHHH
Confidence 345566 8899999999999999999999999999999999999877532 22 3444599999999998886643
Q ss_pred CCCcccEeeeEEecc----ccCCCCceEEEEecHHH-HHHHhcCC-CCC-------CceEEEeccccc
Q 002521 323 GEPLGETVGYKVRLE----GMKGKNTHLLFCTSGIL-LRRLLSDH-NLN-------GVTHVFVDEIHE 377 (913)
Q Consensus 323 ~~~~g~~vGy~v~~e----~~~~~~~~Ivv~T~g~L-l~~l~~~~-~L~-------~~s~IIIDEaHe 377 (913)
..+|..+|...... ....-.++|+|+|||.| ++++.... .++ .+.++||||||.
T Consensus 160 -k~lGLsV~~i~GG~~~~eq~~~y~~DIVygTPgRLgfDyLrd~~~~~~~~~~vqr~~~~~IIDEADs 226 (970)
T PRK12899 160 -RWLGLTTGVLVSGSPLEKRKEIYQCDVVYGTASEFGFDYLRDNSIATRKEEQVGRGFYFAIIDEVDS 226 (970)
T ss_pred -hhcCCeEEEEeCCCCHHHHHHHcCCCEEEECCChhHHHHhhCCCCCcCHHHhhcccccEEEEechhh
Confidence 22344444332211 11112489999999999 99887663 333 568999999993
No 118
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.64 E-value=6.3e-15 Score=163.44 Aligned_cols=276 Identities=21% Similarity=0.245 Sum_probs=174.1
Q ss_pred cCCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHHHHHhCCCcccEeeeEEeccccCCCC
Q 002521 264 RNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVSAERGEPLGETVGYKVRLEGMKGKN 343 (913)
Q Consensus 264 ~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv~~~~~~~~g~~vGy~v~~e~~~~~~ 343 (913)
+.++++-+|||.||||.-+++-+.+ .+.| ++.-|.|.||.++++++. ..|..+.-..|-..++..-....
T Consensus 190 ~RkIi~H~GPTNSGKTy~ALqrl~~----aksG-----vycGPLrLLA~EV~~r~n-a~gipCdL~TGeE~~~~~~~~~~ 259 (700)
T KOG0953|consen 190 RRKIIMHVGPTNSGKTYRALQRLKS----AKSG-----VYCGPLRLLAHEVYDRLN-ALGIPCDLLTGEERRFVLDNGNP 259 (700)
T ss_pred hheEEEEeCCCCCchhHHHHHHHhh----hccc-----eecchHHHHHHHHHHHhh-hcCCCccccccceeeecCCCCCc
Confidence 4456888999999999988776543 2333 333499999999999995 45665555566555444333445
Q ss_pred ceEEEEecHHHHHHHhcCCCCCCceEEEeccccc-----cCcc-hHHHHHHHHHhCccCccceEEEeccccCHHHHHhhh
Q 002521 344 THLLFCTSGILLRRLLSDHNLNGVTHVFVDEIHE-----RGMN-EDFLLIVLKDLLPRRRDLRLILMSATLNAELFSNYF 417 (913)
Q Consensus 344 ~~Ivv~T~g~Ll~~l~~~~~L~~~s~IIIDEaHe-----r~~~-~d~ll~llk~ll~~~~~~kiIlmSATl~~~~~~~yf 417 (913)
+..+=||-++.- .-..|++.||||++. ||+. +.-++++..+-+....+ -|-+
T Consensus 260 a~hvScTVEM~s-------v~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~AdEiHLCGe------psvl--------- 317 (700)
T KOG0953|consen 260 AQHVSCTVEMVS-------VNTPYEVAVIDEIQMMRDPSRGWAWTRALLGLAADEIHLCGE------PSVL--------- 317 (700)
T ss_pred ccceEEEEEEee-------cCCceEEEEehhHHhhcCcccchHHHHHHHhhhhhhhhccCC------chHH---------
Confidence 778888887654 235689999999993 4432 33334432222111110 0110
Q ss_pred CCCCeeccCCccccceeeehhhHHhhhcccccccccccchhhhhHHHHhhhhchhhhhhhHHHHHHHHHhhccccccchh
Q 002521 418 GGAPTIHIPGFTYPVQAHFLEDVLEMTGYKLTSLNQVDDYGQEKLWKTQRQLLPRKRKNQITALVEDALHKSNFENYSSR 497 (913)
Q Consensus 418 ~~~~~i~i~g~~~pv~~~yl~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~~l~~~~~~~~~~~ 497 (913)
..+.+++.++|...+
T Consensus 318 -----------------dlV~~i~k~TGd~ve------------------------------------------------ 332 (700)
T KOG0953|consen 318 -----------------DLVRKILKMTGDDVE------------------------------------------------ 332 (700)
T ss_pred -----------------HHHHHHHhhcCCeeE------------------------------------------------
Confidence 011122222221111
Q ss_pred hhhhhccccccccchhhHHHHHHHHhhhcCCCcEEEEcCChHHHHHHHHHHHcCCCCCCCCCeEEEEecCCCChHHHHHH
Q 002521 498 ARDSLASWTADCIGFNLIEAVLCHICRKECPGAVLVFMTGWEDISCLRDQLKSHPLLGDPNRVLLLTCHGSMPTSEQKFI 577 (913)
Q Consensus 498 ~~~~l~~~~~~~~~~~li~~ll~~i~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lHs~l~~~er~~v 577 (913)
...++....-.+++.+..-+++-.+|.++|- =++++|-.+...++.. .+..+..++|+||++.|..-
T Consensus 333 ------v~~YeRl~pL~v~~~~~~sl~nlk~GDCvV~-FSkk~I~~~k~kIE~~------g~~k~aVIYGsLPPeTr~aQ 399 (700)
T KOG0953|consen 333 ------VREYERLSPLVVEETALGSLSNLKPGDCVVA-FSKKDIFTVKKKIEKA------GNHKCAVIYGSLPPETRLAQ 399 (700)
T ss_pred ------EEeecccCcceehhhhhhhhccCCCCCeEEE-eehhhHHHHHHHHHHh------cCcceEEEecCCCCchhHHH
Confidence 0000000000011111222234467777663 3788999999999886 24458889999999987666
Q ss_pred hccCCC--CccEEEEecchhhhcCCCCCeEEEEeCCCCcceeecCCCCCCcCCccccCHhhHHHHhcccCCC----CCcE
Q 002521 578 FEKAPP--NIRKIVLATNMAEASITINDIVFVVDCGKAKETTYDALNNTPCLLPSWISQASARQRRGRAGRV----QPGQ 651 (913)
Q Consensus 578 ~~~f~~--g~~kVLVATniae~GIdIp~v~~VId~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~----~~G~ 651 (913)
-..|.+ +..+|+||||..++|+|+ +|+-||.+.+.| |+ .-.+..|+.++..|-+|||||. ..|.
T Consensus 400 A~~FNd~~~e~dvlVAsDAIGMGLNL-~IrRiiF~sl~K---ys------g~e~~~it~sqikQIAGRAGRf~s~~~~G~ 469 (700)
T KOG0953|consen 400 AALFNDPSNECDVLVASDAIGMGLNL-NIRRIIFYSLIK---YS------GRETEDITVSQIKQIAGRAGRFGSKYPQGE 469 (700)
T ss_pred HHHhCCCCCccceEEeeccccccccc-ceeEEEEeeccc---CC------cccceeccHHHHHHHhhcccccccCCcCce
Confidence 666655 899999999999999999 788888777666 54 2345678999999999999998 3577
Q ss_pred EEEecChh
Q 002521 652 CYHLYPRC 659 (913)
Q Consensus 652 c~~L~t~~ 659 (913)
+-.|+.++
T Consensus 470 vTtl~~eD 477 (700)
T KOG0953|consen 470 VTTLHSED 477 (700)
T ss_pred EEEeeHhh
Confidence 77777664
No 119
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.62 E-value=7e-14 Score=172.59 Aligned_cols=111 Identities=18% Similarity=0.159 Sum_probs=91.1
Q ss_pred CCCcEEEEcCChHHHHHHHHHHHcCCCCCCCCCeEEEEecCCCChHHHHHHhccCCC---CccEEEEecchhhhcCCCCC
Q 002521 527 CPGAVLVFMTGWEDISCLRDQLKSHPLLGDPNRVLLLTCHGSMPTSEQKFIFEKAPP---NIRKIVLATNMAEASITIND 603 (913)
Q Consensus 527 ~~g~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~---g~~kVLVATniae~GIdIp~ 603 (913)
.+.++|||+........+.+.|... ++....+||+++..+|..+++.|.. +..-+|++|.+++.|||+..
T Consensus 486 ~g~KVLIFSQft~~LdiLed~L~~~-------g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINLt~ 558 (1033)
T PLN03142 486 RDSRVLIFSQMTRLLDILEDYLMYR-------GYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLAT 558 (1033)
T ss_pred cCCeEEeehhHHHHHHHHHHHHHHc-------CCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCchhh
Confidence 4678999999988888888888765 6778899999999999999999964 33467899999999999999
Q ss_pred eEEEEeCCCCcceeecCCCCCCcCCccccCHhhHHHHhcccCCCC---CcEEEEecChhhHH
Q 002521 604 IVFVVDCGKAKETTYDALNNTPCLLPSWISQASARQRRGRAGRVQ---PGQCYHLYPRCVYE 662 (913)
Q Consensus 604 v~~VId~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~~---~G~c~~L~t~~~~~ 662 (913)
+++||. ||+..+ .+...|+.|||-|.+ +-.+|+|+++...+
T Consensus 559 Ad~VIi--------yD~dWN----------P~~d~QAidRaHRIGQkk~V~VyRLIt~gTIE 602 (1033)
T PLN03142 559 ADIVIL--------YDSDWN----------PQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIE 602 (1033)
T ss_pred CCEEEE--------eCCCCC----------hHHHHHHHHHhhhcCCCceEEEEEEEeCCcHH
Confidence 999999 555543 345669999999984 34688998876543
No 120
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.57 E-value=2.9e-13 Score=168.93 Aligned_cols=130 Identities=18% Similarity=0.142 Sum_probs=86.3
Q ss_pred HHHHhhhcCCCcEEEEcCChHHHHHHHHHHHcCCCCCCCCCeEEEEecCCCChHHHHHHhccCCCCccEEEEecchhhhc
Q 002521 519 LCHICRKECPGAVLVFMTGWEDISCLRDQLKSHPLLGDPNRVLLLTCHGSMPTSEQKFIFEKAPPNIRKIVLATNMAEAS 598 (913)
Q Consensus 519 l~~i~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~g~~kVLVATniae~G 598 (913)
+..++.. .+|++|||+++.+..+.+++.|...... .++.+. ..+.. ..|..+++.|++|+..||++|+.+.+|
T Consensus 666 i~~l~~~-~~g~~LVlftS~~~l~~v~~~L~~~~~~---~~~~~l--~q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EG 738 (850)
T TIGR01407 666 IIEITAI-TSPKILVLFTSYEMLHMVYDMLNELPEF---EGYEVL--AQGIN-GSRAKIKKRFNNGEKAILLGTSSFWEG 738 (850)
T ss_pred HHHHHHh-cCCCEEEEeCCHHHHHHHHHHHhhhccc---cCceEE--ecCCC-ccHHHHHHHHHhCCCeEEEEcceeecc
Confidence 3344333 4588999999999999999999753111 123332 22332 478889999999999999999999999
Q ss_pred CCCCCe--EEEEeCCCCcceeecCC----------CCCCcCCc--cccCHhhHHHHhcccCCCC--CcEEEEe
Q 002521 599 ITINDI--VFVVDCGKAKETTYDAL----------NNTPCLLP--SWISQASARQRRGRAGRVQ--PGQCYHL 655 (913)
Q Consensus 599 IdIp~v--~~VId~g~~k~~~yd~~----------~~~~~l~~--~~iSka~~~QR~GRAGR~~--~G~c~~L 655 (913)
||+|+. ..||-.++|...--|+. .+-..+.. .|-..-.+.|-+||.=|.. .|..+.|
T Consensus 739 VD~~g~~l~~viI~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~il 811 (850)
T TIGR01407 739 VDFPGNGLVCLVIPRLPFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALGRLIRRENDRGSIVIL 811 (850)
T ss_pred cccCCCceEEEEEeCCCCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhccccccCCceEEEEEE
Confidence 999977 67888898843211110 01111111 1223356889999999983 4666655
No 121
>smart00847 HA2 Helicase associated domain (HA2) Add an annotation. This presumed domain is about 90 amino acid residues in length. It is found is a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding.
Probab=99.57 E-value=3.2e-15 Score=134.85 Aligned_cols=91 Identities=45% Similarity=0.754 Sum_probs=80.4
Q ss_pred HHHHHHHHcCCCCCCCCcccccccccccCCChHHHHHHHHhhhc-cChHHHHHHHhhccCCCCCcCChhhHHHHHHHhcc
Q 002521 710 NAVDFLKRIGALDEKENLTNLGKFLSMLPVDPKLGKMLVMGAIF-RCFDPVLTIVSGLSVRDPFLLPQEKKNLAEIAKSR 788 (913)
Q Consensus 710 ~al~~L~~~gald~~~~lT~lG~~ls~lpl~p~~~k~ll~~~~~-~cl~~~l~i~a~ls~~~~f~~p~~~~~~~~~~~~~ 788 (913)
+|++.|+.+||||.+++||++|+.|+.||++|++||||+.|+.+ +|.+++++|+|++++.++|..+ ..+......+..
T Consensus 1 ~A~~~L~~LgAld~~~~lT~lG~~m~~lPl~Prla~~Ll~a~~~~~c~~~~~~i~a~ls~~~~~~~~-~~~~~~~~~~~~ 79 (92)
T smart00847 1 AALELLYELGALDDDGRLTPLGRKMAELPLDPRLAKMLLAAAELFGCLDEILTIAAMLSVGDPFPRP-EKRAEADAARRR 79 (92)
T ss_pred CHHHHHHHCCCcCCCCCcCHHHHHHHHCCCChHHHHHHHHHHhhcCcHHHHHHHHHHhcCCCCcCCc-hHHHHHHHHHHH
Confidence 37899999999999999999999999999999999999999999 9999999999999999999877 455666677778
Q ss_pred cCCCChhhHHHHH
Q 002521 789 FSAKDYSDHMALV 801 (913)
Q Consensus 789 ~~~~~~sDhl~ll 801 (913)
|.....|||++++
T Consensus 80 ~~~~~~~D~~~~l 92 (92)
T smart00847 80 FASGRESDHLTLL 92 (92)
T ss_pred ccCCCCCChhhhC
Confidence 8743279999863
No 122
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.50 E-value=3.8e-13 Score=137.51 Aligned_cols=156 Identities=25% Similarity=0.211 Sum_probs=111.0
Q ss_pred CCCcHHHHHHHHHHHHcC-CeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHHHHHhCCCc
Q 002521 248 SLPSFKEKERLLQAIARN-QVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVSAERGEPL 326 (913)
Q Consensus 248 ~lP~~~~q~~il~~i~~~-~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv~~~~~~~~ 326 (913)
..+..++|.+++..+... +++++.|+||+|||+.+..++++..... ....++++.|++.++.|+.+++........
T Consensus 6 ~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~---~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~ 82 (201)
T smart00487 6 FEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRG---KGKRVLVLVPTRELAEQWAEELKKLGPSLG 82 (201)
T ss_pred CCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhccc---CCCcEEEEeCCHHHHHHHHHHHHHHhccCC
Confidence 345678999999999988 9999999999999999999988876432 134677777999999999999987664322
Q ss_pred ccEeeeEEecc------ccCCCCceEEEEecHHHHHHHhcCC-CCCCceEEEeccccccC--cchHHHHHHHHHhCccCc
Q 002521 327 GETVGYKVRLE------GMKGKNTHLLFCTSGILLRRLLSDH-NLNGVTHVFVDEIHERG--MNEDFLLIVLKDLLPRRR 397 (913)
Q Consensus 327 g~~vGy~v~~e------~~~~~~~~Ivv~T~g~Ll~~l~~~~-~L~~~s~IIIDEaHer~--~~~d~ll~llk~ll~~~~ 397 (913)
.....+..... .......+++++|++.+.+.+.... ....+++|||||+|... ...+.+..++..+ .+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~---~~ 159 (201)
T smart00487 83 LKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDGGFGDQLEKLLKLL---PK 159 (201)
T ss_pred eEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcCCcHHHHHHHHHhC---Cc
Confidence 12221111111 1222334999999999999887655 67788999999999654 2333333333332 45
Q ss_pred cceEEEeccccC
Q 002521 398 DLRLILMSATLN 409 (913)
Q Consensus 398 ~~kiIlmSATl~ 409 (913)
..++++||||++
T Consensus 160 ~~~~v~~saT~~ 171 (201)
T smart00487 160 NVQLLLLSATPP 171 (201)
T ss_pred cceEEEEecCCc
Confidence 668999999994
No 123
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.46 E-value=2e-13 Score=150.99 Aligned_cols=324 Identities=12% Similarity=0.033 Sum_probs=196.0
Q ss_pred hcCCCcHHHHHHHHHHHHcCCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHHHHHhCCC
Q 002521 246 RKSLPSFKEKERLLQAIARNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVSAERGEP 325 (913)
Q Consensus 246 r~~lP~~~~q~~il~~i~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv~~~~~~~ 325 (913)
...-.-+++|.+++..+.+++++++.-.|.+||+++......+.... .+....++..|+.+++....+-+.-... .
T Consensus 282 ~~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~---~~~s~~~~~~~~~~~~~~~~~~~~V~~~-~ 357 (1034)
T KOG4150|consen 282 NTGESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTL---CHATNSLLPSEMVEHLRNGSKGQVVHVE-V 357 (1034)
T ss_pred ccccchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhc---CcccceecchhHHHHhhccCCceEEEEE-e
Confidence 34445678899999999999999999999999998877666554432 2234566666888887653221100000 0
Q ss_pred ccc-EeeeEEeccc--------cCCCCceEEEEecHHHHHHHhcCC-----CCCCceEEEeccccc-cCcchHHHHHHHH
Q 002521 326 LGE-TVGYKVRLEG--------MKGKNTHLLFCTSGILLRRLLSDH-----NLNGVTHVFVDEIHE-RGMNEDFLLIVLK 390 (913)
Q Consensus 326 ~g~-~vGy~v~~e~--------~~~~~~~Ivv~T~g~Ll~~l~~~~-----~L~~~s~IIIDEaHe-r~~~~d~ll~llk 390 (913)
+-. .-.|-...+. ....+.+++|+.|......+..+. .+-...++++||+|- .+.........++
T Consensus 358 I~~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~R 437 (1034)
T KOG4150|consen 358 IKARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFPTKALAQDQLR 437 (1034)
T ss_pred hhhhhcceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecchhhHHHHHHH
Confidence 000 0001000111 112356889998877765543322 344567899999993 2332222222233
Q ss_pred HhCc------cCccceEEEecccc--CHHHHHhhhC--CCCeeccCCccccceeeehhhHHhhhcccccccccccchhhh
Q 002521 391 DLLP------RRRDLRLILMSATL--NAELFSNYFG--GAPTIHIPGFTYPVQAHFLEDVLEMTGYKLTSLNQVDDYGQE 460 (913)
Q Consensus 391 ~ll~------~~~~~kiIlmSATl--~~~~~~~yf~--~~~~i~i~g~~~pv~~~yl~di~~~~~~~~~~~~~~~~~~~~ 460 (913)
.++. ...+++++-.|||+ +....++.|+ ....+++.|.+..-+...+
T Consensus 438 ~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~~DGSPs~~K~~V~----------------------- 494 (1034)
T KOG4150|consen 438 ALSDLIKGFEASINMGVYDGDTPYKDRTRLRSELANLSELELVTIDGSPSSEKLFVL----------------------- 494 (1034)
T ss_pred HHHHHHHHHHhhcCcceEeCCCCcCCHHHHHHHhcCCcceEEEEecCCCCccceEEE-----------------------
Confidence 3222 34578999999999 3345566666 3456667665533222211
Q ss_pred hHHHHhhhhc-hhhhhhhHHHHHHHHHhhccccccchhhhhhhccccccccchhhHHHHHHHHhhhcCCCcEEEEcCChH
Q 002521 461 KLWKTQRQLL-PRKRKNQITALVEDALHKSNFENYSSRARDSLASWTADCIGFNLIEAVLCHICRKECPGAVLVFMTGWE 539 (913)
Q Consensus 461 ~~~~~~~~~~-~~~~~~~i~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~li~~ll~~i~~~~~~g~iLVF~~~~~ 539 (913)
|+...... ..++.+.+.+. .+++..+.. .+-++|-||+.+.
T Consensus 495 --WNP~~~P~~~~~~~~~i~E~----------------------------------s~~~~~~i~--~~~R~IAFC~~R~ 536 (1034)
T KOG4150|consen 495 --WNPSAPPTSKSEKSSKVVEV----------------------------------SHLFAEMVQ--HGLRCIAFCPSRK 536 (1034)
T ss_pred --eCCCCCCcchhhhhhHHHHH----------------------------------HHHHHHHHH--cCCcEEEeccHHH
Confidence 11000000 00111111100 011111111 3457999999999
Q ss_pred HHHHHHHHHHcCCCC-CCCCCeEEEEecCCCChHHHHHHhccCCCCccEEEEecchhhhcCCCCCeEEEEeCCCCcceee
Q 002521 540 DISCLRDQLKSHPLL-GDPNRVLLLTCHGSMPTSEQKFIFEKAPPNIRKIVLATNMAEASITINDIVFVVDCGKAKETTY 618 (913)
Q Consensus 540 ~i~~l~~~L~~~~~~-~~~~~~~v~~lHs~l~~~er~~v~~~f~~g~~kVLVATniae~GIdIp~v~~VId~g~~k~~~y 618 (913)
-|+.+....++.... +...-..|..+.||...++|++|....-.|+.+-|||||.+|-||||...+.|+.+|+|.
T Consensus 537 ~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~giIaTNALELGIDIG~LDAVl~~GFP~---- 612 (1034)
T KOG4150|consen 537 LCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKLCGIIATNALELGIDIGHLDAVLHLGFPG---- 612 (1034)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCeeeEEEecchhhhccccccceeEEEccCch----
Confidence 988776555432100 000012355678999999999999999999999999999999999999999999999986
Q ss_pred cCCCCCCcCCccccCHhhHHHHhcccCCC-CCcEE
Q 002521 619 DALNNTPCLLPSWISQASARQRRGRAGRV-QPGQC 652 (913)
Q Consensus 619 d~~~~~~~l~~~~iSka~~~QR~GRAGR~-~~G~c 652 (913)
|-++++|..|||||. .+...
T Consensus 613 --------------S~aNl~QQ~GRAGRRNk~SLa 633 (1034)
T KOG4150|consen 613 --------------SIANLWQQAGRAGRRNKPSLA 633 (1034)
T ss_pred --------------hHHHHHHHhccccccCCCceE
Confidence 889999999999998 55543
No 124
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.45 E-value=1.5e-11 Score=136.71 Aligned_cols=110 Identities=20% Similarity=0.138 Sum_probs=94.8
Q ss_pred CCCcEEEEcCChHHHHHHHHHHHcCCCCCCCCCeEEEEecCCCChHHHHHHhccCCCCccEEEEecchhhhcCCCCCeEE
Q 002521 527 CPGAVLVFMTGWEDISCLRDQLKSHPLLGDPNRVLLLTCHGSMPTSEQKFIFEKAPPNIRKIVLATNMAEASITINDIVF 606 (913)
Q Consensus 527 ~~g~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~g~~kVLVATniae~GIdIp~v~~ 606 (913)
.+.++||-+-|++.++.+.++|.+. ++.+..+||++..-||.+++...+.|...|||.-|.+-+|+|+|.|.+
T Consensus 445 ~~eRvLVTtLTKkmAEdLT~Yl~e~-------gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsL 517 (663)
T COG0556 445 KNERVLVTTLTKKMAEDLTEYLKEL-------GIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSL 517 (663)
T ss_pred cCCeEEEEeehHHHHHHHHHHHHhc-------CceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeE
Confidence 4578999999999999999999997 899999999999999999999999999999999999999999999977
Q ss_pred EEeCCCCcceeecCCCCCCcCCccccCHhhHHHHhcccCCCCCcEEEEec
Q 002521 607 VVDCGKAKETTYDALNNTPCLLPSWISQASARQRRGRAGRVQPGQCYHLY 656 (913)
Q Consensus 607 VId~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~~~G~c~~L~ 656 (913)
|...+.-|+-. .-|-.+.+|-+|||.|.-.|+++...
T Consensus 518 VAIlDADKeGF-------------LRse~SLIQtIGRAARN~~GkvIlYA 554 (663)
T COG0556 518 VAILDADKEGF-------------LRSERSLIQTIGRAARNVNGKVILYA 554 (663)
T ss_pred EEEeecCcccc-------------ccccchHHHHHHHHhhccCCeEEEEc
Confidence 76433333211 11666888999999999999987653
No 125
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.45 E-value=8.5e-13 Score=126.85 Aligned_cols=137 Identities=31% Similarity=0.298 Sum_probs=93.9
Q ss_pred CeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHHHHHhCCCcccEeeeEEeccccC-----
Q 002521 266 QVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVSAERGEPLGETVGYKVRLEGMK----- 340 (913)
Q Consensus 266 ~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv~~~~~~~~g~~vGy~v~~e~~~----- 340 (913)
+++++.||||+|||+++..++.+.... +...++++++|++.++.|..+.+...... +..+.+........
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~---~~~~~~lv~~p~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 75 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDS---LKGGQVLVLAPTRELANQVAERLKELFGE--GIKVGYLIGGTSIKQQEKL 75 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhc---ccCCCEEEEcCcHHHHHHHHHHHHHHhhC--CcEEEEEecCcchhHHHHH
Confidence 368999999999999999888876543 22346677779999999999998886653 33333333322222
Q ss_pred -CCCceEEEEecHHHHHHHhcCC-CCCCceEEEeccccccCcchHHHHHHHHHhCccCccceEEEecccc
Q 002521 341 -GKNTHLLFCTSGILLRRLLSDH-NLNGVTHVFVDEIHERGMNEDFLLIVLKDLLPRRRDLRLILMSATL 408 (913)
Q Consensus 341 -~~~~~Ivv~T~g~Ll~~l~~~~-~L~~~s~IIIDEaHer~~~~d~ll~llk~ll~~~~~~kiIlmSATl 408 (913)
..+.+|+++|++.+.+.+.... ....+++|||||+|.-......... ........+..+++++|||+
T Consensus 76 ~~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~-~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 76 LSGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGLLG-LKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred hcCCCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcchHHHH-HHHHhhCCccceEEEEeccC
Confidence 3568999999999988776543 4567899999999954222211111 12223334566899999996
No 126
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.44 E-value=9.8e-12 Score=150.08 Aligned_cols=98 Identities=21% Similarity=0.136 Sum_probs=69.3
Q ss_pred EEEEcCChHHHHHHHHHHHcCCCCCCCCCeEEEEecCCCChHHHHHHhccC--------------------------CCC
Q 002521 531 VLVFMTGWEDISCLRDQLKSHPLLGDPNRVLLLTCHGSMPTSEQKFIFEKA--------------------------PPN 584 (913)
Q Consensus 531 iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f--------------------------~~g 584 (913)
.||-+.+++.+-.++..|.......+ ..+.+..+||..+...|..+++.. ..+
T Consensus 759 GliR~anI~p~V~~A~~L~~~~~~~~-~~i~~~~yHSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~ 837 (1110)
T TIGR02562 759 GLIRVANIDPLIRLAQFLYALLAEEK-YQIHLCCYHAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALN 837 (1110)
T ss_pred EEEEEcCchHHHHHHHHHHhhccccC-CceeEEEecccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccC
Confidence 47778888888888888876532222 356788899998777665554321 135
Q ss_pred ccEEEEecchhhhcCCCCCeEEEEeCCCCcceeecCCCCCCcCCccccCHhhHHHHhcccCCCCCc
Q 002521 585 IRKIVLATNMAEASITINDIVFVVDCGKAKETTYDALNNTPCLLPSWISQASARQRRGRAGRVQPG 650 (913)
Q Consensus 585 ~~kVLVATniae~GIdIp~v~~VId~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~~~G 650 (913)
...|+|||.+.|.|+|+ |.+++|- .+.+..+.+||+||+.|.+..
T Consensus 838 ~~~i~v~Tqv~E~g~D~-dfd~~~~--------------------~~~~~~sliQ~aGR~~R~~~~ 882 (1110)
T TIGR02562 838 HLFIVLATPVEEVGRDH-DYDWAIA--------------------DPSSMRSIIQLAGRVNRHRLE 882 (1110)
T ss_pred CCeEEEEeeeEEEEecc-cCCeeee--------------------ccCcHHHHHHHhhcccccccC
Confidence 77999999999999999 5655552 122455778999999998543
No 127
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.43 E-value=7.3e-13 Score=126.80 Aligned_cols=104 Identities=23% Similarity=0.318 Sum_probs=92.2
Q ss_pred CCCcEEEEcCChHHHHHHHHHHHcCCCCCCCCCeEEEEecCCCChHHHHHHhccCCCCccEEEEecchhhhcCCCCCeEE
Q 002521 527 CPGAVLVFMTGWEDISCLRDQLKSHPLLGDPNRVLLLTCHGSMPTSEQKFIFEKAPPNIRKIVLATNMAEASITINDIVF 606 (913)
Q Consensus 527 ~~g~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~g~~kVLVATniae~GIdIp~v~~ 606 (913)
.++++|||+++...++.+++.|... ...+..+||+++..+|..+++.|.+|..+||++|+++++|+|+|+++.
T Consensus 27 ~~~~~lvf~~~~~~~~~~~~~l~~~-------~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~G~d~~~~~~ 99 (131)
T cd00079 27 KGGKVLIFCPSKKMLDELAELLRKP-------GIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIARGIDLPNVSV 99 (131)
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhc-------CCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhcCcChhhCCE
Confidence 4689999999999999999999873 567899999999999999999999999999999999999999999999
Q ss_pred EEeCCCCcceeecCCCCCCcCCccccCHhhHHHHhcccCCCC-CcEEEEe
Q 002521 607 VVDCGKAKETTYDALNNTPCLLPSWISQASARQRRGRAGRVQ-PGQCYHL 655 (913)
Q Consensus 607 VId~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~~-~G~c~~L 655 (913)
||..+.+. +...+.|++||+||.+ .|.|+.+
T Consensus 100 vi~~~~~~------------------~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 100 VINYDLPW------------------SPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred EEEeCCCC------------------CHHHheecccccccCCCCceEEeC
Confidence 99855432 6668889999999994 7887753
No 128
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.40 E-value=9.2e-13 Score=158.09 Aligned_cols=125 Identities=19% Similarity=0.160 Sum_probs=103.5
Q ss_pred HHHHHHHHhhh-cCCCcEEEEcCChHHHHHHHHHHHcCCCCCCCCCeEEEEecCCCChHHHHHHhccCCCCccEEEEecc
Q 002521 515 IEAVLCHICRK-ECPGAVLVFMTGWEDISCLRDQLKSHPLLGDPNRVLLLTCHGSMPTSEQKFIFEKAPPNIRKIVLATN 593 (913)
Q Consensus 515 i~~ll~~i~~~-~~~g~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~g~~kVLVATn 593 (913)
+..++..+... ..+.++||||+++..++.+++.|... ++.+..+||+++..+|..++..|+.|...|+|||+
T Consensus 428 i~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~-------gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~ 500 (655)
T TIGR00631 428 VDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKEL-------GIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGIN 500 (655)
T ss_pred HHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhh-------ccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcC
Confidence 34445555432 34668999999999999999999986 67889999999999999999999999999999999
Q ss_pred hhhhcCCCCCeEEEEeCCCCcceeecCCCCCCcCCccccCHhhHHHHhcccCCCCCcEEEEecChh
Q 002521 594 MAEASITINDIVFVVDCGKAKETTYDALNNTPCLLPSWISQASARQRRGRAGRVQPGQCYHLYPRC 659 (913)
Q Consensus 594 iae~GIdIp~v~~VId~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~~~G~c~~L~t~~ 659 (913)
++++|+|+|++++||.++.-. | ..+-|..+|+||+|||||..+|+|+.+++..
T Consensus 501 ~L~rGfDiP~v~lVvi~Dadi---f----------G~p~~~~~~iqriGRagR~~~G~vi~~~~~~ 553 (655)
T TIGR00631 501 LLREGLDLPEVSLVAILDADK---E----------GFLRSERSLIQTIGRAARNVNGKVIMYADKI 553 (655)
T ss_pred hhcCCeeeCCCcEEEEeCccc---c----------cCCCCHHHHHHHhcCCCCCCCCEEEEEEcCC
Confidence 999999999999999854211 0 1122667899999999999999999887753
No 129
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.38 E-value=4.4e-13 Score=116.84 Aligned_cols=72 Identities=26% Similarity=0.358 Sum_probs=67.1
Q ss_pred CeEEEEecCCCChHHHHHHhccCCCCccEEEEecchhhhcCCCCCeEEEEeCCCCcceeecCCCCCCcCCccccCHhhHH
Q 002521 559 RVLLLTCHGSMPTSEQKFIFEKAPPNIRKIVLATNMAEASITINDIVFVVDCGKAKETTYDALNNTPCLLPSWISQASAR 638 (913)
Q Consensus 559 ~~~v~~lHs~l~~~er~~v~~~f~~g~~kVLVATniae~GIdIp~v~~VId~g~~k~~~yd~~~~~~~l~~~~iSka~~~ 638 (913)
++.+..+||+++..+|..+++.|.+|..+|||||+++++|||+|++++||.++.+. |...|.
T Consensus 7 ~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~------------------~~~~~~ 68 (78)
T PF00271_consen 7 GIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPW------------------SPEEYI 68 (78)
T ss_dssp TSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSES------------------SHHHHH
T ss_pred CCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCC------------------CHHHHH
Confidence 77899999999999999999999999999999999999999999999999977654 777999
Q ss_pred HHhcccCCCC
Q 002521 639 QRRGRAGRVQ 648 (913)
Q Consensus 639 QR~GRAGR~~ 648 (913)
|++||+||.+
T Consensus 69 Q~~GR~~R~g 78 (78)
T PF00271_consen 69 QRIGRAGRIG 78 (78)
T ss_dssp HHHTTSSTTT
T ss_pred HHhhcCCCCC
Confidence 9999999963
No 130
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.37 E-value=3.6e-12 Score=121.29 Aligned_cols=135 Identities=19% Similarity=0.228 Sum_probs=88.6
Q ss_pred cCCeEEEEcCCCchHHhH-HHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHHHHHhCCCcccEeeeEEecc-ccCC
Q 002521 264 RNQVIVISGETGCGKTTQ-LPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVSAERGEPLGETVGYKVRLE-GMKG 341 (913)
Q Consensus 264 ~~~~vII~apTGSGKTt~-~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv~~~~~~~~g~~vGy~v~~e-~~~~ 341 (913)
+++..+|-..+|+|||+. .|..+.+.+ .. ..++|++.|||.++..+++.+.. ..+.+....- ....
T Consensus 3 kg~~~~~d~hpGaGKTr~vlp~~~~~~i-~~----~~rvLvL~PTRvva~em~~aL~~-------~~~~~~t~~~~~~~~ 70 (148)
T PF07652_consen 3 KGELTVLDLHPGAGKTRRVLPEIVREAI-KR----RLRVLVLAPTRVVAEEMYEALKG-------LPVRFHTNARMRTHF 70 (148)
T ss_dssp TTEEEEEE--TTSSTTTTHHHHHHHHHH-HT----T--EEEEESSHHHHHHHHHHTTT-------SSEEEESTTSS----
T ss_pred CCceeEEecCCCCCCcccccHHHHHHHH-Hc----cCeEEEecccHHHHHHHHHHHhc-------CCcccCceeeecccc
Confidence 567788999999999985 566555544 22 24778888999999998887743 1233332221 1223
Q ss_pred CCceEEEEecHHHHHHHhcCCCCCCceEEEeccccccCcchHHHHHHHHHhCccCccceEEEeccccCHH
Q 002521 342 KNTHLLFCTSGILLRRLLSDHNLNGVTHVFVDEIHERGMNEDFLLIVLKDLLPRRRDLRLILMSATLNAE 411 (913)
Q Consensus 342 ~~~~Ivv~T~g~Ll~~l~~~~~L~~~s~IIIDEaHer~~~~d~ll~llk~ll~~~~~~kiIlmSATl~~~ 411 (913)
.+.-|.++|.+.+.+.+.+...+.+|++||+||||-.+..+-...+.++.... ....++|+||||++..
T Consensus 71 g~~~i~vMc~at~~~~~~~p~~~~~yd~II~DEcH~~Dp~sIA~rg~l~~~~~-~g~~~~i~mTATPPG~ 139 (148)
T PF07652_consen 71 GSSIIDVMCHATYGHFLLNPCRLKNYDVIIMDECHFTDPTSIAARGYLRELAE-SGEAKVIFMTATPPGS 139 (148)
T ss_dssp SSSSEEEEEHHHHHHHHHTSSCTTS-SEEEECTTT--SHHHHHHHHHHHHHHH-TTS-EEEEEESS-TT-
T ss_pred CCCcccccccHHHHHHhcCcccccCccEEEEeccccCCHHHHhhheeHHHhhh-ccCeeEEEEeCCCCCC
Confidence 56789999999999988876688999999999999665555555566665533 3456899999998643
No 131
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.37 E-value=8.5e-12 Score=136.87 Aligned_cols=329 Identities=15% Similarity=0.150 Sum_probs=180.7
Q ss_pred CcHHHHHHHHHHHHcCC---eEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHHHHHhCCCc
Q 002521 250 PSFKEKERLLQAIARNQ---VIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVSAERGEPL 326 (913)
Q Consensus 250 P~~~~q~~il~~i~~~~---~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv~~~~~~~~ 326 (913)
-+.+||+.-+..+-.|. .-||+-|-|+|||++..-++. .-.+.|.|+| ..-..+.|+..++.......-
T Consensus 302 ~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~------tikK~clvLc--ts~VSVeQWkqQfk~wsti~d 373 (776)
T KOG1123|consen 302 QIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAAC------TIKKSCLVLC--TSAVSVEQWKQQFKQWSTIQD 373 (776)
T ss_pred ccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeee------eecccEEEEe--cCccCHHHHHHHHHhhcccCc
Confidence 34689999999987763 556777999999976654432 2235678888 667888999888866544443
Q ss_pred ccEeeeEEeccccCCCCceEEEEecHHHHHHHhcCC---------CCCCceEEEeccccccCcchHHHHHHHHHhCccCc
Q 002521 327 GETVGYKVRLEGMKGKNTHLLFCTSGILLRRLLSDH---------NLNGVTHVFVDEIHERGMNEDFLLIVLKDLLPRRR 397 (913)
Q Consensus 327 g~~vGy~v~~e~~~~~~~~Ivv~T~g~Ll~~l~~~~---------~L~~~s~IIIDEaHer~~~~d~ll~llk~ll~~~~ 397 (913)
...+-+..........++.|+|+|..++...-.... .-..++++|+||+|-- .... +++++..-.
T Consensus 374 ~~i~rFTsd~Ke~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvv--PA~M----FRRVlsiv~ 447 (776)
T KOG1123|consen 374 DQICRFTSDAKERFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVV--PAKM----FRRVLSIVQ 447 (776)
T ss_pred cceEEeeccccccCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccc--hHHH----HHHHHHHHH
Confidence 344444444344444567899999876642111100 2356899999999932 2211 222222111
Q ss_pred cceEEEeccccCHH--HHH--hhhCCCCeeccCCccccceeeehhhHHhhhcccccccccccchhhhhHHHHhhhhchhh
Q 002521 398 DLRLILMSATLNAE--LFS--NYFGGAPTIHIPGFTYPVQAHFLEDVLEMTGYKLTSLNQVDDYGQEKLWKTQRQLLPRK 473 (913)
Q Consensus 398 ~~kiIlmSATl~~~--~~~--~yf~~~~~i~i~g~~~pv~~~yl~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (913)
.---++++||+-.+ .+. +|+-|+.+.... |++ +...|+... .+ -..+|=. -
T Consensus 448 aHcKLGLTATLvREDdKI~DLNFLIGPKlYEAn---------Wmd--L~~kGhIA~--Vq-----CaEVWCp-------M 502 (776)
T KOG1123|consen 448 AHCKLGLTATLVREDDKITDLNFLIGPKLYEAN---------WMD--LQKKGHIAK--VQ-----CAEVWCP-------M 502 (776)
T ss_pred HHhhccceeEEeeccccccccceeecchhhhcc---------HHH--HHhCCceeE--Ee-----eeeeecC-------C
Confidence 11248999998332 121 122222111100 000 000000000 00 0000000 0
Q ss_pred hhhhHHHHHHHHHhhccccccchhhhhhhccccccccchhhHHHHHHHHhhhcCCCcEEEEcCChHHHHHHHHHHHcCCC
Q 002521 474 RKNQITALVEDALHKSNFENYSSRARDSLASWTADCIGFNLIEAVLCHICRKECPGAVLVFMTGWEDISCLRDQLKSHPL 553 (913)
Q Consensus 474 ~~~~i~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~li~~ll~~i~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~ 553 (913)
.......++..... -+..+..+++.. +. ....|...+.. ++.+||||....-.....+-.|.+-
T Consensus 503 t~eFy~eYL~~~t~----------kr~lLyvMNP~K--Fr-aCqfLI~~HE~-RgDKiIVFsDnvfALk~YAikl~Kp-- 566 (776)
T KOG1123|consen 503 TPEFYREYLRENTR----------KRMLLYVMNPNK--FR-ACQFLIKFHER-RGDKIIVFSDNVFALKEYAIKLGKP-- 566 (776)
T ss_pred CHHHHHHHHhhhhh----------hhheeeecCcch--hH-HHHHHHHHHHh-cCCeEEEEeccHHHHHHHHHHcCCc--
Confidence 00000011110000 000011111111 11 11223333433 5778999998877666666555542
Q ss_pred CCCCCCeEEEEecCCCChHHHHHHhccCCCC-ccEEEEecchhhhcCCCCCeEEEEeCCCCcceeecCCCCCCcCCcccc
Q 002521 554 LGDPNRVLLLTCHGSMPTSEQKFIFEKAPPN-IRKIVLATNMAEASITINDIVFVVDCGKAKETTYDALNNTPCLLPSWI 632 (913)
Q Consensus 554 ~~~~~~~~v~~lHs~l~~~er~~v~~~f~~g-~~kVLVATniae~GIdIp~v~~VId~g~~k~~~yd~~~~~~~l~~~~i 632 (913)
+++|..++.||.+|++.|+-+ .++-|+-+-++.++||+|..+++|...- ..+
T Consensus 567 ----------fIYG~Tsq~ERm~ILqnFq~n~~vNTIFlSKVgDtSiDLPEAnvLIQISS--------H~G--------- 619 (776)
T KOG1123|consen 567 ----------FIYGPTSQNERMKILQNFQTNPKVNTIFLSKVGDTSIDLPEANVLIQISS--------HGG--------- 619 (776)
T ss_pred ----------eEECCCchhHHHHHHHhcccCCccceEEEeeccCccccCCcccEEEEEcc--------ccc---------
Confidence 468999999999999999854 5688999999999999999999997221 111
Q ss_pred CHhhHHHHhcccCCCCC-------cEEEEecChhh
Q 002521 633 SQASARQRRGRAGRVQP-------GQCYHLYPRCV 660 (913)
Q Consensus 633 Ska~~~QR~GRAGR~~~-------G~c~~L~t~~~ 660 (913)
|+-+=.||.||.-|.+. ...|.|.+++.
T Consensus 620 SRRQEAQRLGRILRAKk~~de~fnafFYSLVS~DT 654 (776)
T KOG1123|consen 620 SRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSKDT 654 (776)
T ss_pred chHHHHHHHHHHHHHhhcCccccceeeeeeeecch
Confidence 55566799999988732 35666766543
No 132
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.37 E-value=5.6e-11 Score=139.47 Aligned_cols=122 Identities=18% Similarity=0.127 Sum_probs=77.8
Q ss_pred cCCCcHHHHHHHHHHHHcCCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHHHHHhCCCc
Q 002521 247 KSLPSFKEKERLLQAIARNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVSAERGEPL 326 (913)
Q Consensus 247 ~~lP~~~~q~~il~~i~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv~~~~~~~~ 326 (913)
..+..|..|---.-.+..|+ |....||+|||+++.++++-..+ .|..+-| ++|+-.||.+-++.+...+.. +
T Consensus 75 lg~r~ydvQlig~l~Ll~G~--VaEM~TGEGKTLvA~l~a~l~AL---~G~~Vhv--vT~NdyLA~RDae~m~~ly~~-L 146 (764)
T PRK12326 75 LGLRPFDVQLLGALRLLAGD--VIEMATGEGKTLAGAIAAAGYAL---QGRRVHV--ITVNDYLARRDAEWMGPLYEA-L 146 (764)
T ss_pred cCCCcchHHHHHHHHHhCCC--cccccCCCCHHHHHHHHHHHHHH---cCCCeEE--EcCCHHHHHHHHHHHHHHHHh-c
Confidence 34444555544444445554 56889999999999888876554 2333333 349999999999988765543 5
Q ss_pred ccEeeeEEeccc----cCCCCceEEEEecHH-----HHHHHhcCC---CCCCceEEEecccc
Q 002521 327 GETVGYKVRLEG----MKGKNTHLLFCTSGI-----LLRRLLSDH---NLNGVTHVFVDEIH 376 (913)
Q Consensus 327 g~~vGy~v~~e~----~~~~~~~Ivv~T~g~-----Ll~~l~~~~---~L~~~s~IIIDEaH 376 (913)
|..||+-..... ...-.++|+|+|..- |.+.+.... ....+.+.||||||
T Consensus 147 GLsvg~i~~~~~~~err~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvD 208 (764)
T PRK12326 147 GLTVGWITEESTPEERRAAYACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEAD 208 (764)
T ss_pred CCEEEEECCCCCHHHHHHHHcCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchh
Confidence 666665432111 111357999999854 333332222 45678999999999
No 133
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.36 E-value=1.6e-10 Score=142.75 Aligned_cols=152 Identities=13% Similarity=0.074 Sum_probs=93.9
Q ss_pred HHHHHhhhcCCCcEEEEcCChHHHHHHHHHHHcCCCCCCCCCeEEEEecCCCChHHHHHHhccCCCCccEEEEecchhhh
Q 002521 518 VLCHICRKECPGAVLVFMTGWEDISCLRDQLKSHPLLGDPNRVLLLTCHGSMPTSEQKFIFEKAPPNIRKIVLATNMAEA 597 (913)
Q Consensus 518 ll~~i~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~g~~kVLVATniae~ 597 (913)
.+..+. ..+|++||++++.+..+.+++.|... ...+ ...|.-. .+..+.+.|+.+...||++|+.+-+
T Consensus 639 ~i~~~~--~~~g~~LVLFtS~~~l~~v~~~l~~~-------~~~~-l~Qg~~~--~~~~l~~~F~~~~~~vLlG~~sFwE 706 (820)
T PRK07246 639 RLEELK--QLQQPILVLFNSKKHLLAVSDLLDQW-------QVSH-LAQEKNG--TAYNIKKRFDRGEQQILLGLGSFWE 706 (820)
T ss_pred HHHHHH--hcCCCEEEEECcHHHHHHHHHHHhhc-------CCcE-EEeCCCc--cHHHHHHHHHcCCCeEEEecchhhC
Confidence 344444 34789999999999999999999653 1223 2333211 2355788898888899999999999
Q ss_pred cCCCC--CeEEEEeCCCCcceeecCC----------CCCCcCCc--cccCHhhHHHHhcccCCCC--CcEEEEecC---h
Q 002521 598 SITIN--DIVFVVDCGKAKETTYDAL----------NNTPCLLP--SWISQASARQRRGRAGRVQ--PGQCYHLYP---R 658 (913)
Q Consensus 598 GIdIp--~v~~VId~g~~k~~~yd~~----------~~~~~l~~--~~iSka~~~QR~GRAGR~~--~G~c~~L~t---~ 658 (913)
|||+| +...||-.++|...--||. .+-..+.. .|-..-.+.|-+||.=|.. .|..+.|=+ .
T Consensus 707 GVD~p~~~~~~viI~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~Gvv~ilD~R~~~ 786 (820)
T PRK07246 707 GVDFVQADRMIEVITRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKSAVLILDRRILT 786 (820)
T ss_pred CCCCCCCCeEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcEEEEEECCcccc
Confidence 99997 4566777888843222211 11122221 1223456889999999984 577666522 2
Q ss_pred hhHHhhhhCCCCc---ccccChhhHH
Q 002521 659 CVYEAFAEYQLPE---LLRTPLNSLC 681 (913)
Q Consensus 659 ~~~~~l~~~~~pE---i~r~~L~~~~ 681 (913)
..|...--..+|+ +...++.++.
T Consensus 787 k~Yg~~~l~sLP~~~~~~~~~~~~~~ 812 (820)
T PRK07246 787 KSYGKQILASLAEEFLISQQNFSDVL 812 (820)
T ss_pred cHHHHHHHHhCCCCCccccCCHHHHH
Confidence 3453322333343 4445666653
No 134
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.35 E-value=6.4e-12 Score=127.62 Aligned_cols=147 Identities=14% Similarity=0.110 Sum_probs=94.3
Q ss_pred CCcHHHHHHHHHHHHc-------CCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHHHHH
Q 002521 249 LPSFKEKERLLQAIAR-------NQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVSAE 321 (913)
Q Consensus 249 lP~~~~q~~il~~i~~-------~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv~~~ 321 (913)
+.+.++|.+++..+.. ++.+++.+|||||||..+..++.+.. . ++++++|+..++.|..+.+...
T Consensus 2 ~~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~---~-----~~l~~~p~~~l~~Q~~~~~~~~ 73 (184)
T PF04851_consen 2 YKLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELA---R-----KVLIVAPNISLLEQWYDEFDDF 73 (184)
T ss_dssp -EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHH---C-----EEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhccc---c-----ceeEecCHHHHHHHHHHHHHHh
Confidence 3467889988888873 68999999999999998887676643 1 5666669999999999998443
Q ss_pred hCCCcccEe--------e--------eEEeccccCCCCceEEEEecHHHHHHHhcCC------------CCCCceEEEec
Q 002521 322 RGEPLGETV--------G--------YKVRLEGMKGKNTHLLFCTSGILLRRLLSDH------------NLNGVTHVFVD 373 (913)
Q Consensus 322 ~~~~~g~~v--------G--------y~v~~e~~~~~~~~Ivv~T~g~Ll~~l~~~~------------~L~~~s~IIID 373 (913)
......... + .............+++++|.+.|........ ....+++||+|
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~D 153 (184)
T PF04851_consen 74 GSEKYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVIID 153 (184)
T ss_dssp STTSEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEEE
T ss_pred hhhhhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEEe
Confidence 322111100 0 0000111123457899999999987764311 34577999999
Q ss_pred cccccCcchHHHHHHHHHhCccCccceEEEeccccC
Q 002521 374 EIHERGMNEDFLLIVLKDLLPRRRDLRLILMSATLN 409 (913)
Q Consensus 374 EaHer~~~~d~ll~llk~ll~~~~~~kiIlmSATl~ 409 (913)
|||+-..... ...+++ .+...+|+||||+.
T Consensus 154 EaH~~~~~~~-~~~i~~-----~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 154 EAHHYPSDSS-YREIIE-----FKAAFILGLTATPF 183 (184)
T ss_dssp TGGCTHHHHH-HHHHHH-----SSCCEEEEEESS-S
T ss_pred hhhhcCCHHH-HHHHHc-----CCCCeEEEEEeCcc
Confidence 9995433332 222222 45567999999975
No 135
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.34 E-value=3.1e-11 Score=144.88 Aligned_cols=123 Identities=14% Similarity=0.115 Sum_probs=82.1
Q ss_pred CCCcHHHHHHHHHHHHcCCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHHHHHhCCCcc
Q 002521 248 SLPSFKEKERLLQAIARNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVSAERGEPLG 327 (913)
Q Consensus 248 ~lP~~~~q~~il~~i~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv~~~~~~~~g 327 (913)
.+-...|--+++-.+.=++--|..+.||+|||+++.++++-..+ .|..+.|+. |+..||.+-++.+...+.. +|
T Consensus 78 ~lGm~~ydVQliGg~~Lh~G~iaEM~TGEGKTLvA~l~a~l~al---~G~~VhvvT--~ndyLA~RD~e~m~~l~~~-lG 151 (913)
T PRK13103 78 VMGMRHFDVQLIGGMTLHEGKIAEMRTGEGKTLVGTLAVYLNAL---SGKGVHVVT--VNDYLARRDANWMRPLYEF-LG 151 (913)
T ss_pred HhCCCcchhHHHhhhHhccCccccccCCCCChHHHHHHHHHHHH---cCCCEEEEe--CCHHHHHHHHHHHHHHhcc-cC
Confidence 33344444456666655666678899999999998888875543 344444444 9999999999998876543 45
Q ss_pred cEeeeEEec----cccCCCCceEEEEecHHH-HHHHhcCC-------CCCCceEEEecccc
Q 002521 328 ETVGYKVRL----EGMKGKNTHLLFCTSGIL-LRRLLSDH-------NLNGVTHVFVDEIH 376 (913)
Q Consensus 328 ~~vGy~v~~----e~~~~~~~~Ivv~T~g~L-l~~l~~~~-------~L~~~s~IIIDEaH 376 (913)
..||.-... +....-.++|+|+|..-| ++.|+.+- ...++.++||||+|
T Consensus 152 l~v~~i~~~~~~~err~~Y~~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvD 212 (913)
T PRK13103 152 LSVGIVTPFQPPEEKRAAYAADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVD 212 (913)
T ss_pred CEEEEECCCCCHHHHHHHhcCCEEEEcccccccchhhccceechhhhcccccceeEechhh
Confidence 566643221 111112479999999776 34443332 34889999999999
No 136
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.34 E-value=4.2e-12 Score=153.50 Aligned_cols=123 Identities=20% Similarity=0.161 Sum_probs=103.5
Q ss_pred HHHHHHHhhh-cCCCcEEEEcCChHHHHHHHHHHHcCCCCCCCCCeEEEEecCCCChHHHHHHhccCCCCccEEEEecch
Q 002521 516 EAVLCHICRK-ECPGAVLVFMTGWEDISCLRDQLKSHPLLGDPNRVLLLTCHGSMPTSEQKFIFEKAPPNIRKIVLATNM 594 (913)
Q Consensus 516 ~~ll~~i~~~-~~~g~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~g~~kVLVATni 594 (913)
..++..+... ..+.++||||++...++.+++.|... ++.+..+||+++..+|..++..|+.|...|+|||++
T Consensus 433 ~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~-------gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~ 505 (652)
T PRK05298 433 DDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKEL-------GIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINL 505 (652)
T ss_pred HHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhc-------ceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCH
Confidence 3444444432 24568999999999999999999986 788999999999999999999999999999999999
Q ss_pred hhhcCCCCCeEEEEeCCCCcceeecCCCCCCcCCccccCHhhHHHHhcccCCCCCcEEEEecCh
Q 002521 595 AEASITINDIVFVVDCGKAKETTYDALNNTPCLLPSWISQASARQRRGRAGRVQPGQCYHLYPR 658 (913)
Q Consensus 595 ae~GIdIp~v~~VId~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~~~G~c~~L~t~ 658 (913)
+++|+|+|++++||.++... |. .|-+..+|+||+||+||...|.|+.+++.
T Consensus 506 L~rGfdlp~v~lVii~d~ei---fG----------~~~~~~~yiqr~GR~gR~~~G~~i~~~~~ 556 (652)
T PRK05298 506 LREGLDIPEVSLVAILDADK---EG----------FLRSERSLIQTIGRAARNVNGKVILYADK 556 (652)
T ss_pred HhCCccccCCcEEEEeCCcc---cc----------cCCCHHHHHHHhccccCCCCCEEEEEecC
Confidence 99999999999999855432 11 12367789999999999999999999874
No 137
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.29 E-value=2.6e-10 Score=131.29 Aligned_cols=376 Identities=18% Similarity=0.115 Sum_probs=197.5
Q ss_pred CcHHHHHHHHHHH----HcCCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHHHHHhC-C
Q 002521 250 PSFKEKERLLQAI----ARNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVSAERG-E 324 (913)
Q Consensus 250 P~~~~q~~il~~i----~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv~~~~~-~ 324 (913)
.+..||-+=+..+ ..+-+.|+.-+.|-|||.|..-++.-.... ++..+..+|+.|.-.|.. +...+++... .
T Consensus 167 ~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQtIs~l~yl~~~--~~~~GPfLVi~P~StL~N-W~~Ef~rf~P~l 243 (971)
T KOG0385|consen 167 ELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQTISLLGYLKGR--KGIPGPFLVIAPKSTLDN-WMNEFKRFTPSL 243 (971)
T ss_pred ccchhhhccHHHHHHHHhcCcccEeehhcccchHHHHHHHHHHHHHh--cCCCCCeEEEeeHhhHHH-HHHHHHHhCCCc
Confidence 3445666555444 456689999999999998876555432211 222223444449877654 3444544332 1
Q ss_pred CcccEeeeEE-----eccccCCCCceEEEEecHHHHHHHhcCCCCCCceEEEeccccccCcchH-HHHHHHHHhCccCcc
Q 002521 325 PLGETVGYKV-----RLEGMKGKNTHLLFCTSGILLRRLLSDHNLNGVTHVFVDEIHERGMNED-FLLIVLKDLLPRRRD 398 (913)
Q Consensus 325 ~~g~~vGy~v-----~~e~~~~~~~~Ivv~T~g~Ll~~l~~~~~L~~~s~IIIDEaHer~~~~d-~ll~llk~ll~~~~~ 398 (913)
.+-..+|-.- +-+-......+|+++|.++.++.-. -..--+.+++||||+| |--+.. .|...++.+...
T Consensus 244 ~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~dk~-~lk~~~W~ylvIDEaH-RiKN~~s~L~~~lr~f~~~--- 318 (971)
T KOG0385|consen 244 NVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKDKS-FLKKFNWRYLVIDEAH-RIKNEKSKLSKILREFKTD--- 318 (971)
T ss_pred ceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhhHH-HHhcCCceEEEechhh-hhcchhhHHHHHHHHhccc---
Confidence 1112222110 0112223468999999999987421 0122357999999999 433333 333344444332
Q ss_pred ceEEEecccc---------------------CHHHHHhhhCCCCeec---cCCccccceeee-hhhHHhhhccccccccc
Q 002521 399 LRLILMSATL---------------------NAELFSNYFGGAPTIH---IPGFTYPVQAHF-LEDVLEMTGYKLTSLNQ 453 (913)
Q Consensus 399 ~kiIlmSATl---------------------~~~~~~~yf~~~~~i~---i~g~~~pv~~~y-l~di~~~~~~~~~~~~~ 453 (913)
.-+++|.|+ +.+.|.+||....... +-.+.++|-..| +..+-.-.-..+.|...
T Consensus 319 -nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~dVe~sLppKkE 397 (971)
T KOG0385|consen 319 -NRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRIKSDVEKSLPPKKE 397 (971)
T ss_pred -ceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHHHHHHHhHhhcCCCcce
Confidence 347888885 1245666775321000 000111111111 11111111112222222
Q ss_pred ccchhh----hhHH-HH--hhhhc-----hhhhhhhHHHHHHHHHhhccccccchhhhhhhcccccccc---------ch
Q 002521 454 VDDYGQ----EKLW-KT--QRQLL-----PRKRKNQITALVEDALHKSNFENYSSRARDSLASWTADCI---------GF 512 (913)
Q Consensus 454 ~~~~~~----~~~~-~~--~~~~~-----~~~~~~~i~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~~---------~~ 512 (913)
+.-|.. +.-| +. .+.+. ....+..+.+.+-+.-+..+.+-+-. .++...+... ..
T Consensus 398 ~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~----g~ePg~pyttdehLv~nSGKm 473 (971)
T KOG0385|consen 398 LIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFD----GAEPGPPYTTDEHLVTNSGKM 473 (971)
T ss_pred eeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccC----CCCCCCCCCcchHHHhcCcce
Confidence 222110 0000 00 00000 00012223333332222211111000 0000001111 11
Q ss_pred hhHHHHHHHHhhhcCCCcEEEEcCChHHHHHHHHHHHcCCCCCCCCCeEEEEecCCCChHHHHHHhccCCCC---ccEEE
Q 002521 513 NLIEAVLCHICRKECPGAVLVFMTGWEDISCLRDQLKSHPLLGDPNRVLLLTCHGSMPTSEQKFIFEKAPPN---IRKIV 589 (913)
Q Consensus 513 ~li~~ll~~i~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~g---~~kVL 589 (913)
-+..++|..+. ..+.+||||-.-.....-+.++..-. ++...-+.|+++.++|...++.|... +.-.+
T Consensus 474 ~vLDkLL~~Lk--~~GhRVLIFSQmt~mLDILeDyc~~R-------~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFl 544 (971)
T KOG0385|consen 474 LVLDKLLPKLK--EQGHRVLIFSQMTRMLDILEDYCMLR-------GYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFL 544 (971)
T ss_pred ehHHHHHHHHH--hCCCeEEEeHHHHHHHHHHHHHHHhc-------CceeEeecCCCCcHHHHHHHHhcCCCCcceEEEE
Confidence 12233333332 35678999976665555555555443 78889999999999999999998653 44567
Q ss_pred EecchhhhcCCCCCeEEEEeCCCCcceeecCCCCCCcCCccccCHhhHHHHhcccCCCCCcEEEEecChhhHH
Q 002521 590 LATNMAEASITINDIVFVVDCGKAKETTYDALNNTPCLLPSWISQASARQRRGRAGRVQPGQCYHLYPRCVYE 662 (913)
Q Consensus 590 VATniae~GIdIp~v~~VId~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~~~G~c~~L~t~~~~~ 662 (913)
++|-+.+-|||+-..+.||- ||...|...-. ++.+|+-|.|-..+=++|||++...-+
T Consensus 545 LSTRAGGLGINL~aADtVIl--------yDSDWNPQ~DL-------QAmDRaHRIGQ~K~V~V~RLitentVE 602 (971)
T KOG0385|consen 545 LSTRAGGLGINLTAADTVIL--------YDSDWNPQVDL-------QAMDRAHRIGQKKPVVVYRLITENTVE 602 (971)
T ss_pred EeccccccccccccccEEEE--------ecCCCCchhhh-------HHHHHHHhhCCcCceEEEEEeccchHH
Confidence 89999999999999999998 77766655333 788999999999999999999976544
No 138
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.23 E-value=1.2e-09 Score=137.43 Aligned_cols=159 Identities=17% Similarity=0.162 Sum_probs=97.3
Q ss_pred HHHHhhhcCCCcEEEEcCChHHHHHHHHHHHcCCCCCCCCCeEEEEecCCCChHHHHHHhccCCCCccEEEEecchhhhc
Q 002521 519 LCHICRKECPGAVLVFMTGWEDISCLRDQLKSHPLLGDPNRVLLLTCHGSMPTSEQKFIFEKAPPNIRKIVLATNMAEAS 598 (913)
Q Consensus 519 l~~i~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~g~~kVLVATniae~G 598 (913)
+..++.. .+|++|||+++.+..+.+++.|..... ..++.+.. . ++....|.++++.|+.+...||++|..+.+|
T Consensus 744 i~~l~~~-~~g~~LVLFtSy~~l~~v~~~l~~~~~---~~~~~ll~-Q-g~~~~~r~~l~~~F~~~~~~iLlG~~sFwEG 817 (928)
T PRK08074 744 IAKIAKA-TKGRMLVLFTSYEMLKKTYYNLKNEEE---LEGYVLLA-Q-GVSSGSRARLTKQFQQFDKAILLGTSSFWEG 817 (928)
T ss_pred HHHHHHh-CCCCEEEEECCHHHHHHHHHHHhhccc---ccCceEEe-c-CCCCCCHHHHHHHHHhcCCeEEEecCcccCc
Confidence 3344333 467899999999999999999976421 01232222 2 3433456788888988888999999999999
Q ss_pred CCCCCe--EEEEeCCCCcceeecCC----------CCCCcCCc--cccCHhhHHHHhcccCCC--CCcEEEEe---cChh
Q 002521 599 ITINDI--VFVVDCGKAKETTYDAL----------NNTPCLLP--SWISQASARQRRGRAGRV--QPGQCYHL---YPRC 659 (913)
Q Consensus 599 IdIp~v--~~VId~g~~k~~~yd~~----------~~~~~l~~--~~iSka~~~QR~GRAGR~--~~G~c~~L---~t~~ 659 (913)
||+|+- .+||-.++|...--|+. .+-..+.. .|...-.+.|-+||.=|. ..|..+.| +...
T Consensus 818 VD~pg~~l~~viI~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~v~ilD~R~~~k 897 (928)
T PRK08074 818 IDIPGDELSCLVIVRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGTVFVLDRRLTTT 897 (928)
T ss_pred cccCCCceEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEEEEEecCccccc
Confidence 999964 88988898842111110 11111211 133345678999999998 34666655 2233
Q ss_pred hHHhhhhCCCCc--ccccChhhHHHH
Q 002521 660 VYEAFAEYQLPE--LLRTPLNSLCLQ 683 (913)
Q Consensus 660 ~~~~l~~~~~pE--i~r~~L~~~~L~ 683 (913)
.|...--...|. +.+.++.++.-.
T Consensus 898 ~Yg~~~l~sLP~~~~~~~~~~~~~~~ 923 (928)
T PRK08074 898 SYGKYFLESLPTVPVYEGTLEELLEE 923 (928)
T ss_pred hHHHHHHHhCCCCCcccCCHHHHHHH
Confidence 454322333333 333455555433
No 139
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.20 E-value=3.3e-10 Score=135.93 Aligned_cols=322 Identities=15% Similarity=0.173 Sum_probs=194.9
Q ss_pred HcCCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHHHHHhCCCcccEeeeE---Eecccc
Q 002521 263 ARNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVSAERGEPLGETVGYK---VRLEGM 339 (913)
Q Consensus 263 ~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv~~~~~~~~g~~vGy~---v~~e~~ 339 (913)
..|++++|.+|+|||||.++-++++. .....+++++.|.-+.+..++..+.+.++...|..+--. ...+..
T Consensus 1157 ~~nd~v~vga~~gsgkt~~ae~a~l~------~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~G~~~~~l~ge~s~~lk 1230 (1674)
T KOG0951|consen 1157 NTNDNVLVGAPNGSGKTACAELALLR------PDTIGRAVYIAPLEEIADEQYRDWEKKFSKLLGLRIVKLTGETSLDLK 1230 (1674)
T ss_pred cccceEEEecCCCCchhHHHHHHhcC------CccceEEEEecchHHHHHHHHHHHHHhhccccCceEEecCCccccchH
Confidence 45789999999999999999888874 445678999999999999888887776655444333211 111222
Q ss_pred CCCCceEEEEecHHHHHHHhcCCCCCCceEEEeccccccC-cchHHHHHH--HHH-hCccCccceEEEecccc-CHHHHH
Q 002521 340 KGKNTHLLFCTSGILLRRLLSDHNLNGVTHVFVDEIHERG-MNEDFLLIV--LKD-LLPRRRDLRLILMSATL-NAELFS 414 (913)
Q Consensus 340 ~~~~~~Ivv~T~g~Ll~~l~~~~~L~~~s~IIIDEaHer~-~~~d~ll~l--lk~-ll~~~~~~kiIlmSATl-~~~~~~ 414 (913)
.-...+|+++||+..-.. + ....+++.|.||.|.-| .+...+..+ .+. ....-.++|++.+|..+ ++.++
T Consensus 1231 l~~~~~vii~tpe~~d~l-q---~iQ~v~l~i~d~lh~igg~~g~v~evi~S~r~ia~q~~k~ir~v~ls~~lana~d~- 1305 (1674)
T KOG0951|consen 1231 LLQKGQVIISTPEQWDLL-Q---SIQQVDLFIVDELHLIGGVYGAVYEVICSMRYIASQLEKKIRVVALSSSLANARDL- 1305 (1674)
T ss_pred HhhhcceEEechhHHHHH-h---hhhhcceEeeehhhhhcccCCceEEEEeeHHHHHHHHHhheeEEEeehhhccchhh-
Confidence 234579999999987544 2 67889999999999543 221111100 111 11123467899999887 66666
Q ss_pred hhhCCCCeeccC--CccccceeeehhhHHhhhcccccccccccchhhhhHHHHhhhhchhhhhhhHHHHHHHHHhhcccc
Q 002521 415 NYFGGAPTIHIP--GFTYPVQAHFLEDVLEMTGYKLTSLNQVDDYGQEKLWKTQRQLLPRKRKNQITALVEDALHKSNFE 492 (913)
Q Consensus 415 ~yf~~~~~i~i~--g~~~pv~~~yl~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~~l~~~~~~ 492 (913)
-++....++..+ .|..|.+++.-. .. + .+.. ....+..+..+.
T Consensus 1306 ig~s~~~v~Nf~p~~R~~Pl~i~i~~-------~~------~-~~~~----------------~~~~am~~~~~~----- 1350 (1674)
T KOG0951|consen 1306 IGASSSGVFNFSPSVRPVPLEIHIQS-------VD------I-SHFE----------------SRMLAMTKPTYT----- 1350 (1674)
T ss_pred ccccccceeecCcccCCCceeEEEEE-------ec------c-chhH----------------HHHHHhhhhHHH-----
Confidence 333344444443 445555544210 00 0 0000 000000000000
Q ss_pred ccchhhhhhhccccccccchhhHHHHHHHHhhhcCCCcEEEEcCChHHHHHHHHHHHcCCC-----------------CC
Q 002521 493 NYSSRARDSLASWTADCIGFNLIEAVLCHICRKECPGAVLVFMTGWEDISCLRDQLKSHPL-----------------LG 555 (913)
Q Consensus 493 ~~~~~~~~~l~~~~~~~~~~~li~~ll~~i~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~-----------------~~ 555 (913)
++..+. ..+.+.+||+|+++++..++.-+-.... +.
T Consensus 1351 ------------------------ai~~~a---~~~k~~~vf~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~ 1403 (1674)
T KOG0951|consen 1351 ------------------------AIVRHA---GNRKPAIVFLPTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLR 1403 (1674)
T ss_pred ------------------------HHHHHh---cCCCCeEEEeccchhhhhhhhccchhhccCcHHHHHHHHhcchHhhh
Confidence 111111 2467899999999999877655433111 11
Q ss_pred CCCCeEEEEecCCCChHHHHHHhccCCCCccEEEEecchhhhcCCCCCeEEEEeCCCCcceeecCCCCCCcCCccccCHh
Q 002521 556 DPNRVLLLTCHGSMPTSEQKFIFEKAPPNIRKIVLATNMAEASITINDIVFVVDCGKAKETTYDALNNTPCLLPSWISQA 635 (913)
Q Consensus 556 ~~~~~~v~~lHs~l~~~er~~v~~~f~~g~~kVLVATniae~GIdIp~v~~VId~g~~k~~~yd~~~~~~~l~~~~iSka 635 (913)
......|. |-+|+..++..+-..|..|.+.|+|...- -.|+-... ..||-.|. ..||...+... ..+-+
T Consensus 1404 e~l~~gvg--~e~~s~~d~~iv~~l~e~g~i~v~v~s~~-~~~~~~~~-~lVvvmgt---~~ydg~e~~~~----~y~i~ 1472 (1674)
T KOG0951|consen 1404 ESLKHGVG--HEGLSSNDQEIVQQLFEAGAIQVCVMSRD-CYGTKLKA-HLVVVMGT---QYYDGKEHSYE----DYPIA 1472 (1674)
T ss_pred hccccccc--ccccCcchHHHHHHHHhcCcEEEEEEEcc-cccccccc-eEEEEecc---eeecccccccc----cCchh
Confidence 11122333 88999999999999999999999887655 66766543 44444443 34877655432 23677
Q ss_pred hHHHHhcccCCCCCcEEEEecCh---hhHHhhhhCCCC
Q 002521 636 SARQRRGRAGRVQPGQCYHLYPR---CVYEAFAEYQLP 670 (913)
Q Consensus 636 ~~~QR~GRAGR~~~G~c~~L~t~---~~~~~l~~~~~p 670 (913)
...|++|+|.| .|+|+.+... ..|..+.....|
T Consensus 1473 ~ll~m~G~a~~--~~k~vi~~~~~~k~yykkfl~e~lP 1508 (1674)
T KOG0951|consen 1473 ELLQMVGLASG--AGKCVIMCHTPKKEYYKKFLYEPLP 1508 (1674)
T ss_pred HHHHHhhhhcC--CccEEEEecCchHHHHHHhccCcCc
Confidence 99999999998 7888888653 334555555554
No 140
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.20 E-value=2.7e-11 Score=105.72 Aligned_cols=79 Identities=32% Similarity=0.393 Sum_probs=70.0
Q ss_pred HHHHHHcCCCCCCCCCeEEEEecCCCChHHHHHHhccCCCCccEEEEecchhhhcCCCCCeEEEEeCCCCcceeecCCCC
Q 002521 544 LRDQLKSHPLLGDPNRVLLLTCHGSMPTSEQKFIFEKAPPNIRKIVLATNMAEASITINDIVFVVDCGKAKETTYDALNN 623 (913)
Q Consensus 544 l~~~L~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~g~~kVLVATniae~GIdIp~v~~VId~g~~k~~~yd~~~~ 623 (913)
+++.|... ++.+..+||+++..+|..+++.|.+|..+||++|+++++|+|+|+++.||..+.+.
T Consensus 3 l~~~l~~~-------~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~--------- 66 (82)
T smart00490 3 LAELLKEL-------GIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPW--------- 66 (82)
T ss_pred HHHHHHHC-------CCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCC---------
Confidence 45566654 67899999999999999999999999999999999999999999999999866543
Q ss_pred CCcCCccccCHhhHHHHhcccCCC
Q 002521 624 TPCLLPSWISQASARQRRGRAGRV 647 (913)
Q Consensus 624 ~~~l~~~~iSka~~~QR~GRAGR~ 647 (913)
+...+.|++||+||.
T Consensus 67 ---------~~~~~~Q~~gR~~R~ 81 (82)
T smart00490 67 ---------SPASYIQRIGRAGRA 81 (82)
T ss_pred ---------CHHHHHHhhcccccC
Confidence 778999999999996
No 141
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.18 E-value=7.1e-11 Score=142.22 Aligned_cols=107 Identities=23% Similarity=0.267 Sum_probs=91.4
Q ss_pred CCCcEEEEcCChHHHHHHHHHHHcCCCCCCCCCeEEEEecCCCChHHHHHHhccCCCCccEEEEecchhhhcCCCC---C
Q 002521 527 CPGAVLVFMTGWEDISCLRDQLKSHPLLGDPNRVLLLTCHGSMPTSEQKFIFEKAPPNIRKIVLATNMAEASITIN---D 603 (913)
Q Consensus 527 ~~g~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~g~~kVLVATniae~GIdIp---~ 603 (913)
.+.++||||++++.++.+.+.|... ++....+|+ .+.+|+..+..|..+...|+||||+|+||+||+ +
T Consensus 597 ~grpVLIft~Sve~sE~Ls~~L~~~-------gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATNMAGRGtDIkl~~~ 667 (1025)
T PRK12900 597 KGQPVLVGTASVEVSETLSRMLRAK-------RIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATNMAGRGTDIKLGEG 667 (1025)
T ss_pred CCCCEEEEeCcHHHHHHHHHHHHHc-------CCCceeecC--CHHHhHHHHHHhcCCCCeEEEeccCcCCCCCcCCccc
Confidence 4678999999999999999999986 677788897 577888999999999999999999999999999 5
Q ss_pred eE-----EEEeCCCCcceeecCCCCCCcCCccccCHhhHHHHhcccCCC-CCcEEEEecChhh
Q 002521 604 IV-----FVVDCGKAKETTYDALNNTPCLLPSWISQASARQRRGRAGRV-QPGQCYHLYPRCV 660 (913)
Q Consensus 604 v~-----~VId~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~-~~G~c~~L~t~~~ 660 (913)
|. +||.+..+. |...+.||+|||||. .||.+..+++.++
T Consensus 668 V~~vGGL~VIgterhe------------------s~Rid~Ql~GRtGRqGdpGsS~ffvSleD 712 (1025)
T PRK12900 668 VRELGGLFILGSERHE------------------SRRIDRQLRGRAGRQGDPGESVFYVSLED 712 (1025)
T ss_pred hhhhCCceeeCCCCCc------------------hHHHHHHHhhhhhcCCCCcceEEEechhH
Confidence 53 447655554 566788999999999 7999998888654
No 142
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.18 E-value=2.3e-10 Score=137.25 Aligned_cols=131 Identities=11% Similarity=0.015 Sum_probs=85.8
Q ss_pred CCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHHHHHhC-CCcccEeeeE---Ee---ccccCCCCce
Q 002521 273 ETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVSAERG-EPLGETVGYK---VR---LEGMKGKNTH 345 (913)
Q Consensus 273 pTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv~~~~~-~~~g~~vGy~---v~---~e~~~~~~~~ 345 (913)
-+|||||.++...+.+.+. .|+++.|++ |...++.|+.+++...+| ..+....+.. .+ +.....+..+
T Consensus 168 ~~GSGKTevyl~~i~~~l~---~Gk~vLvLv--PEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~ 242 (665)
T PRK14873 168 LPGEDWARRLAAAAAATLR---AGRGALVVV--PDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQAR 242 (665)
T ss_pred CCCCcHHHHHHHHHHHHHH---cCCeEEEEe--cchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCc
Confidence 3699999999988876552 344555555 999999999999998886 3322211110 11 1223446689
Q ss_pred EEEEecHHHHHHHhcCCCCCCceEEEeccccccCcchH------HHHHHHHHhCccCccceEEEeccccCHHHHHhh
Q 002521 346 LLFCTSGILLRRLLSDHNLNGVTHVFVDEIHERGMNED------FLLIVLKDLLPRRRDLRLILMSATLNAELFSNY 416 (913)
Q Consensus 346 Ivv~T~g~Ll~~l~~~~~L~~~s~IIIDEaHer~~~~d------~ll~llk~ll~~~~~~kiIlmSATl~~~~~~~y 416 (913)
|+|+|-..++- .+.++++|||||-|+-++..+ .-... .......+..+|+.|||++.+.+...
T Consensus 243 IViGtRSAvFa------P~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA--~~Ra~~~~~~lvLgSaTPSles~~~~ 311 (665)
T PRK14873 243 VVVGTRSAVFA------PVEDLGLVAIWDDGDDLLAEPRAPYPHAREVA--LLRAHQHGCALLIGGHARTAEAQALV 311 (665)
T ss_pred EEEEcceeEEe------ccCCCCEEEEEcCCchhhcCCCCCCccHHHHH--HHHHHHcCCcEEEECCCCCHHHHHHH
Confidence 99999866653 678999999999995332222 11111 11122346789999999998876543
No 143
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=99.14 E-value=1.8e-08 Score=117.00 Aligned_cols=116 Identities=18% Similarity=0.217 Sum_probs=94.1
Q ss_pred CCCcEEEEcCChHHHHHHHHHHHcCCCCCCCCCeEEEEecCCCChHHHHHHhccCCCCcc--EEEEecchhhhcCCCCCe
Q 002521 527 CPGAVLVFMTGWEDISCLRDQLKSHPLLGDPNRVLLLTCHGSMPTSEQKFIFEKAPPNIR--KIVLATNMAEASITINDI 604 (913)
Q Consensus 527 ~~g~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~g~~--kVLVATniae~GIdIp~v 604 (913)
.+.++|+|..++....-+...|... .++..+-+.|..+...|..+.+.|.++.. -.|++|-+.+-|+|+-+.
T Consensus 545 qg~rvllFsqs~~mLdilE~fL~~~------~~ysylRmDGtT~~~~R~~lVd~Fne~~s~~VFLLTTrvGGLGlNLTgA 618 (923)
T KOG0387|consen 545 QGDRVLLFSQSRQMLDILESFLRRA------KGYSYLRMDGTTPAALRQKLVDRFNEDESIFVFLLTTRVGGLGLNLTGA 618 (923)
T ss_pred CCCEEEEehhHHHHHHHHHHHHHhc------CCceEEEecCCCccchhhHHHHhhcCCCceEEEEEEecccccccccccC
Confidence 3458999999999999998888842 38899999999999999999999997764 457899999999999999
Q ss_pred EEEEeCCCCcceeecCCCCCCcCCccccCHhhHHHHhcccCCCCCcEEEEecChhhHHh
Q 002521 605 VFVVDCGKAKETTYDALNNTPCLLPSWISQASARQRRGRAGRVQPGQCYHLYPRCVYEA 663 (913)
Q Consensus 605 ~~VId~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~~~G~c~~L~t~~~~~~ 663 (913)
+-||. |||..|.++-. ++.-|+=|-|-.+.=.+|||.+....+.
T Consensus 619 nRVII--------fDPdWNPStD~-------QAreRawRiGQkkdV~VYRL~t~gTIEE 662 (923)
T KOG0387|consen 619 NRVII--------FDPDWNPSTDN-------QARERAWRIGQKKDVVVYRLMTAGTIEE 662 (923)
T ss_pred ceEEE--------ECCCCCCccch-------HHHHHHHhhcCccceEEEEEecCCcHHH
Confidence 87777 77777766433 5666777777777788999988765443
No 144
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=99.13 E-value=2e-09 Score=127.59 Aligned_cols=320 Identities=18% Similarity=0.203 Sum_probs=175.0
Q ss_pred cCCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHHHHHhCCCcccEeeeEEeccccC-CC
Q 002521 264 RNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVSAERGEPLGETVGYKVRLEGMK-GK 342 (913)
Q Consensus 264 ~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv~~~~~~~~g~~vGy~v~~e~~~-~~ 342 (913)
.+.+.+|-+|.|||||+++..++.+.+ ..+..+|+++.-|+.|+.+++.++.... +.+.+-|....+... ..
T Consensus 48 ~~~V~vVRSpMGTGKTtaLi~wLk~~l----~~~~~~VLvVShRrSL~~sL~~rf~~~~---l~gFv~Y~d~~~~~i~~~ 120 (824)
T PF02399_consen 48 KRGVLVVRSPMGTGKTTALIRWLKDAL----KNPDKSVLVVSHRRSLTKSLAERFKKAG---LSGFVNYLDSDDYIIDGR 120 (824)
T ss_pred CCCeEEEECCCCCCcHHHHHHHHHHhc----cCCCCeEEEEEhHHHHHHHHHHHHhhcC---CCcceeeecccccccccc
Confidence 667899999999999999988886643 1334578888999999999999997521 223333332222211 12
Q ss_pred CceEEEEecHHHHHHHhcCCCCCCceEEEecccccc--Cc------chHHHHHHHHHhCccCccceEEEeccccCHH--H
Q 002521 343 NTHLLFCTSGILLRRLLSDHNLNGVTHVFVDEIHER--GM------NEDFLLIVLKDLLPRRRDLRLILMSATLNAE--L 412 (913)
Q Consensus 343 ~~~Ivv~T~g~Ll~~l~~~~~L~~~s~IIIDEaHer--~~------~~d~ll~llk~ll~~~~~~kiIlmSATl~~~--~ 412 (913)
..+-++++.+.|.+.. ...+.++++|||||+-.- .+ .......+++.++...+ ++|+|-||++.. +
T Consensus 121 ~~~rLivqIdSL~R~~--~~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak--~VI~~DA~ln~~tvd 196 (824)
T PF02399_consen 121 PYDRLIVQIDSLHRLD--GSLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAK--TVIVMDADLNDQTVD 196 (824)
T ss_pred ccCeEEEEehhhhhcc--cccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCC--eEEEecCCCCHHHHH
Confidence 3466677777776653 336788999999999820 01 11223445556666555 799999999875 2
Q ss_pred HHhhhCCCCeecc-CCc----cccceee-ehhhHHhhhcccccccccccchhhhhHHHHhhhhchhhhhhhHHHHHHHHH
Q 002521 413 FSNYFGGAPTIHI-PGF----TYPVQAH-FLEDVLEMTGYKLTSLNQVDDYGQEKLWKTQRQLLPRKRKNQITALVEDAL 486 (913)
Q Consensus 413 ~~~yf~~~~~i~i-~g~----~~pv~~~-yl~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~~l 486 (913)
|-+.+.+..-+++ .+. .|.-..- ++.. .+. +.+...+
T Consensus 197 Fl~~~Rp~~~i~vI~n~y~~~~fs~R~~~~~~~-----------------l~~--------------------~~l~~~~ 239 (824)
T PF02399_consen 197 FLASCRPDENIHVIVNTYASPGFSNRRCTFLRS-----------------LGT--------------------DTLAAAL 239 (824)
T ss_pred HHHHhCCCCcEEEEEeeeecCCcccceEEEecc-----------------cCc--------------------HHHHHHh
Confidence 3333443222222 110 0111100 0000 000 0011111
Q ss_pred hhccccccch----hhhhhhccccccccchhhHHHHHHHHhhhcCCCcEEEEcCChHHHHHHHHHHHcCCCCCCCCCeEE
Q 002521 487 HKSNFENYSS----RARDSLASWTADCIGFNLIEAVLCHICRKECPGAVLVFMTGWEDISCLRDQLKSHPLLGDPNRVLL 562 (913)
Q Consensus 487 ~~~~~~~~~~----~~~~~l~~~~~~~~~~~li~~ll~~i~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~v 562 (913)
...+...... .....................++..+ ..+.+|-||+.+....+.+++..... ...|
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tF~~~L~~~L---~~gknIcvfsSt~~~~~~v~~~~~~~-------~~~V 309 (824)
T PF02399_consen 240 NPEDENADTSPTPKHSPDPTATAAISNDETTFFSELLARL---NAGKNICVFSSTVSFAEIVARFCARF-------TKKV 309 (824)
T ss_pred CCcccccccCCCcCCCCccccccccccchhhHHHHHHHHH---hCCCcEEEEeChHHHHHHHHHHHHhc-------CCeE
Confidence 1000000000 00000000000000111122222222 24556888999999998888888775 5567
Q ss_pred EEecCCCChHHHHHHhccCCCCccEEEEecchhhhcCCCCCeEEEEeCCCCcceeecCCCCCCcCCccccCHhhHHHHhc
Q 002521 563 LTCHGSMPTSEQKFIFEKAPPNIRKIVLATNMAEASITINDIVFVVDCGKAKETTYDALNNTPCLLPSWISQASARQRRG 642 (913)
Q Consensus 563 ~~lHs~l~~~er~~v~~~f~~g~~kVLVATniae~GIdIp~v~~VId~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~G 642 (913)
..++|.-+.. .+ +. =++.+|++=|++...|+++.+..+=-.++..+... +-. +..+..|+.|
T Consensus 310 l~l~s~~~~~---dv-~~--W~~~~VviYT~~itvG~Sf~~~HF~~~f~yvk~~~-----~gp-------d~~s~~Q~lg 371 (824)
T PF02399_consen 310 LVLNSTDKLE---DV-ES--WKKYDVVIYTPVITVGLSFEEKHFDSMFAYVKPMS-----YGP-------DMVSVYQMLG 371 (824)
T ss_pred EEEcCCCCcc---cc-cc--ccceeEEEEeceEEEEeccchhhceEEEEEecCCC-----CCC-------cHHHHHHHHH
Confidence 7788766554 22 12 34679999999999999997653321122222111 111 2335779999
Q ss_pred ccCCCCCcEEEEecChh
Q 002521 643 RAGRVQPGQCYHLYPRC 659 (913)
Q Consensus 643 RAGR~~~G~c~~L~t~~ 659 (913)
|+-.......|.-+...
T Consensus 372 RvR~l~~~ei~v~~d~~ 388 (824)
T PF02399_consen 372 RVRSLLDNEIYVYIDAS 388 (824)
T ss_pred HHHhhccCeEEEEEecc
Confidence 99776777766665543
No 145
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.12 E-value=2.2e-09 Score=127.83 Aligned_cols=103 Identities=23% Similarity=0.277 Sum_probs=71.9
Q ss_pred cCCCcEEEEcCChHHHHHHHHHHHcCCCCCCCCCeEEEEecCCCChHHHHHHhccCCCCccEEEEecchhhhcCCCCCe-
Q 002521 526 ECPGAVLVFMTGWEDISCLRDQLKSHPLLGDPNRVLLLTCHGSMPTSEQKFIFEKAPPNIRKIVLATNMAEASITINDI- 604 (913)
Q Consensus 526 ~~~g~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~g~~kVLVATniae~GIdIp~v- 604 (913)
..+.||||.|.+.+..+.+...|... ++....+++.-...|-..|-++-+. -.|.||||+|++|.||.=-
T Consensus 424 ~~gqPVLVgT~SIe~SE~ls~~L~~~-------gi~h~vLNAk~~e~EA~IIa~AG~~--GaVTIATNMAGRGTDI~Lg~ 494 (925)
T PRK12903 424 KKGQPILIGTAQVEDSETLHELLLEA-------NIPHTVLNAKQNAREAEIIAKAGQK--GAITIATNMAGRGTDIKLSK 494 (925)
T ss_pred hcCCCEEEEeCcHHHHHHHHHHHHHC-------CCCceeecccchhhHHHHHHhCCCC--CeEEEecccccCCcCccCch
Confidence 35679999999999999999999986 4555556665333333333332223 3699999999999999622
Q ss_pred -------EEEEeCCCCcceeecCCCCCCcCCccccCHhhHHHHhcccCCC-CCcEEEEe
Q 002521 605 -------VFVVDCGKAKETTYDALNNTPCLLPSWISQASARQRRGRAGRV-QPGQCYHL 655 (913)
Q Consensus 605 -------~~VId~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~-~~G~c~~L 655 (913)
-+||-+..+...+ -=.|-+|||||. .||.+-.+
T Consensus 495 ~V~~~GGLhVIgTerheSrR------------------IDnQLrGRaGRQGDpGss~f~ 535 (925)
T PRK12903 495 EVLELGGLYVLGTDKAESRR------------------IDNQLRGRSGRQGDVGESRFF 535 (925)
T ss_pred hHHHcCCcEEEecccCchHH------------------HHHHHhcccccCCCCCcceEE
Confidence 2788766655333 334999999999 67864443
No 146
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.08 E-value=2.9e-09 Score=127.59 Aligned_cols=118 Identities=19% Similarity=0.118 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHcCCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHHHHHhCCCcccEeee
Q 002521 253 KEKERLLQAIARNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVSAERGEPLGETVGY 332 (913)
Q Consensus 253 ~~q~~il~~i~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv~~~~~~~~g~~vGy 332 (913)
.+--+++-++.-++--|..+.||.|||+++.++++-..+ .|..+-|+. ++..||..-++.+...+. -+|.+||.
T Consensus 77 ~ydvQlig~l~L~~G~IaEm~TGEGKTL~a~l~ayl~aL---~G~~VhVvT--~NdyLA~RD~e~m~pvy~-~LGLsvg~ 150 (870)
T CHL00122 77 HFDVQLIGGLVLNDGKIAEMKTGEGKTLVATLPAYLNAL---TGKGVHIVT--VNDYLAKRDQEWMGQIYR-FLGLTVGL 150 (870)
T ss_pred CCchHhhhhHhhcCCccccccCCCCchHHHHHHHHHHHh---cCCceEEEe--CCHHHHHHHHHHHHHHHH-HcCCceee
Confidence 334456676666777888999999999988888754333 344444444 899999888777655332 24455554
Q ss_pred EEec----cccCCCCceEEEEecH-----HHHHHHhcCC---CCCCceEEEecccc
Q 002521 333 KVRL----EGMKGKNTHLLFCTSG-----ILLRRLLSDH---NLNGVTHVFVDEIH 376 (913)
Q Consensus 333 ~v~~----e~~~~~~~~Ivv~T~g-----~Ll~~l~~~~---~L~~~s~IIIDEaH 376 (913)
.... +....-.++|+|+|.. .|.+.+...+ ....+.+.||||||
T Consensus 151 i~~~~~~~err~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvD 206 (870)
T CHL00122 151 IQEGMSSEERKKNYLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVD 206 (870)
T ss_pred eCCCCChHHHHHhcCCCCEecCCccccccchhhccCcChHHhhccccceeeeecch
Confidence 3221 1122235799999984 3444432221 45778999999999
No 147
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=98.99 E-value=4e-08 Score=117.83 Aligned_cols=123 Identities=17% Similarity=0.129 Sum_probs=79.4
Q ss_pred CCCcHHHHHHHHHHHHcCCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHHHHHhCCCcc
Q 002521 248 SLPSFKEKERLLQAIARNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVSAERGEPLG 327 (913)
Q Consensus 248 ~lP~~~~q~~il~~i~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv~~~~~~~~g 327 (913)
.+-...+--+++-++.=++--|..+.||-|||+++.++++-..+ .|..+.|+- +..-||..=++.+...+.. +|
T Consensus 81 ~lG~r~ydVQliGgl~Lh~G~IAEM~TGEGKTL~atlpaylnAL---~GkgVhVVT--vNdYLA~RDae~m~~vy~~-LG 154 (939)
T PRK12902 81 VLGMRHFDVQLIGGMVLHEGQIAEMKTGEGKTLVATLPSYLNAL---TGKGVHVVT--VNDYLARRDAEWMGQVHRF-LG 154 (939)
T ss_pred HhCCCcchhHHHhhhhhcCCceeeecCCCChhHHHHHHHHHHhh---cCCCeEEEe--CCHHHHHhHHHHHHHHHHH-hC
Confidence 34444444557777766777788999999999998888776554 334444444 7888887766666543322 45
Q ss_pred cEeeeEEe----ccccCCCCceEEEEecHHH-----HHHHhcCC---CCCCceEEEecccc
Q 002521 328 ETVGYKVR----LEGMKGKNTHLLFCTSGIL-----LRRLLSDH---NLNGVTHVFVDEIH 376 (913)
Q Consensus 328 ~~vGy~v~----~e~~~~~~~~Ivv~T~g~L-----l~~l~~~~---~L~~~s~IIIDEaH 376 (913)
..||.... .+....-.++|+|+|..-| .+.+..+. ....+.+.||||||
T Consensus 155 Ltvg~i~~~~~~~err~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvD 215 (939)
T PRK12902 155 LSVGLIQQDMSPEERKKNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVD 215 (939)
T ss_pred CeEEEECCCCChHHHHHhcCCCeEEecCCcccccchhhhhcccccccccCccceEEEeccc
Confidence 55554322 1122234689999999665 55544322 56788999999999
No 148
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=98.99 E-value=4.3e-08 Score=118.59 Aligned_cols=115 Identities=18% Similarity=0.157 Sum_probs=90.4
Q ss_pred CCCcEEEEcCChHHHHHHHHHHHcCCCCCCCCCeEEEEecCCCChHHHHHHhccCCC---CccEEEEecchhhhcCCCCC
Q 002521 527 CPGAVLVFMTGWEDISCLRDQLKSHPLLGDPNRVLLLTCHGSMPTSEQKFIFEKAPP---NIRKIVLATNMAEASITIND 603 (913)
Q Consensus 527 ~~g~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~---g~~kVLVATniae~GIdIp~ 603 (913)
.+-+||||-.-+....-|+++|... +|..--+.|++..+.|+..++.|.. ...-.|+||-+.+-|||+-.
T Consensus 698 ~GHrVLIFSQMVRmLDIL~eYL~~r-------~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGINLat 770 (1373)
T KOG0384|consen 698 GGHRVLIFSQMVRMLDILAEYLSLR-------GYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINLAT 770 (1373)
T ss_pred CCceEEEhHHHHHHHHHHHHHHHHc-------CCcceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCcccccccc
Confidence 4568999999999999999999876 7777889999999999999999864 45688999999999999998
Q ss_pred eEEEEeCCCCcceeecCCCCCCcCCccccCHhhHHHHhcccCCCCCcEEEEecChhhHHh
Q 002521 604 IVFVVDCGKAKETTYDALNNTPCLLPSWISQASARQRRGRAGRVQPGQCYHLYPRCVYEA 663 (913)
Q Consensus 604 v~~VId~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~~~G~c~~L~t~~~~~~ 663 (913)
.+.||. ||...|...-+ ++.=|+-|.|-...=.+|||.|+..|+.
T Consensus 771 ADTVII--------FDSDWNPQNDL-------QAqARaHRIGQkk~VnVYRLVTk~TvEe 815 (1373)
T KOG0384|consen 771 ADTVII--------FDSDWNPQNDL-------QAQARAHRIGQKKHVNVYRLVTKNTVEE 815 (1373)
T ss_pred cceEEE--------eCCCCCcchHH-------HHHHHHHhhcccceEEEEEEecCCchHH
Confidence 877776 66655544333 3334444445445667999999988764
No 149
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=98.94 E-value=7.7e-08 Score=114.65 Aligned_cols=103 Identities=15% Similarity=0.147 Sum_probs=74.1
Q ss_pred EcCChHHHHHHHHHHHcCCCCCCCCCeEEEEecCCCChHHHHHHhccCCCC--c-cEEEEecchhhhcCCCCCeEEEEeC
Q 002521 534 FMTGWEDISCLRDQLKSHPLLGDPNRVLLLTCHGSMPTSEQKFIFEKAPPN--I-RKIVLATNMAEASITINDIVFVVDC 610 (913)
Q Consensus 534 F~~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~g--~-~kVLVATniae~GIdIp~v~~VId~ 610 (913)
.+........+.+.+... .++.++.+||.|+..+|+.+++.|.+- . .-.+++|-+-+.||++-+..-||.
T Consensus 600 ~Isny~~tldl~e~~~~~------~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil- 672 (776)
T KOG0390|consen 600 LISNYTQTLDLFEQLCRW------RGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLIL- 672 (776)
T ss_pred EeccHHHHHHHHHHHHhh------cCceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEE-
Confidence 334444455555555443 288999999999999999999999653 3 345677888999999999988887
Q ss_pred CCCcceeecCCCCCCcCCccccCHhhHHHHhcccCCC---CCcEEEEecChhh
Q 002521 611 GKAKETTYDALNNTPCLLPSWISQASARQRRGRAGRV---QPGQCYHLYPRCV 660 (913)
Q Consensus 611 g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~---~~G~c~~L~t~~~ 660 (913)
||+..|...- .|-++||=|. ++-+.|+|.+...
T Consensus 673 -------~D~dWNPa~d----------~QAmaR~~RdGQKk~v~iYrLlatGt 708 (776)
T KOG0390|consen 673 -------FDPDWNPAVD----------QQAMARAWRDGQKKPVYIYRLLATGT 708 (776)
T ss_pred -------eCCCCCchhH----------HHHHHHhccCCCcceEEEEEeecCCC
Confidence 7766655433 3666776665 6778899987654
No 150
>COG4889 Predicted helicase [General function prediction only]
Probab=98.92 E-value=2.2e-09 Score=124.64 Aligned_cols=106 Identities=17% Similarity=0.230 Sum_probs=73.6
Q ss_pred cEEEEcCChHHHHHHHHHHHcC------CCCC--CCCCeEEEEecCCCChHHHHHHhc---cCCCCccEEEEecchhhhc
Q 002521 530 AVLVFMTGWEDISCLRDQLKSH------PLLG--DPNRVLLLTCHGSMPTSEQKFIFE---KAPPNIRKIVLATNMAEAS 598 (913)
Q Consensus 530 ~iLVF~~~~~~i~~l~~~L~~~------~~~~--~~~~~~v~~lHs~l~~~er~~v~~---~f~~g~~kVLVATniae~G 598 (913)
+.+-||.+.++-..+++.+..- .+.. ....+.+-...|.|+..+|...+. .|.+..++||-.--.+.+|
T Consensus 462 RAIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaRcLSEG 541 (1518)
T COG4889 462 RAIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPNECKILSNARCLSEG 541 (1518)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcchheeeccchhhhcC
Confidence 3456777766665555544320 0001 112344555668899888865543 5678899999999999999
Q ss_pred CCCCCeEEEEeCCCCcceeecCCCCCCcCCccccCHhhHHHHhcccCCCCCcEEE
Q 002521 599 ITINDIVFVVDCGKAKETTYDALNNTPCLLPSWISQASARQRRGRAGRVQPGQCY 653 (913)
Q Consensus 599 IdIp~v~~VId~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~~~G~c~ 653 (913)
||+|..+-||. ||+.+.+ ...+|-+||+-|..+|+-|
T Consensus 542 VDVPaLDsViF--------f~pr~sm----------VDIVQaVGRVMRKa~gK~y 578 (1518)
T COG4889 542 VDVPALDSVIF--------FDPRSSM----------VDIVQAVGRVMRKAKGKKY 578 (1518)
T ss_pred CCccccceEEE--------ecCchhH----------HHHHHHHHHHHHhCcCCcc
Confidence 99999999998 7766644 4667999999999887643
No 151
>PF07717 OB_NTP_bind: Oligonucleotide/oligosaccharide-binding (OB)-fold; InterPro: IPR011709 This domain is found towards the C terminus of the DEAD-box helicases (IPR011545 from INTERPRO). In these helicases it appears to be always found in association with IPR007502 from INTERPRO. ; PDB: 3I4U_A 2XAU_B 3KX2_B.
Probab=98.88 E-value=1.5e-09 Score=102.04 Aligned_cols=71 Identities=27% Similarity=0.459 Sum_probs=47.5
Q ss_pred HHHHHHHHHcCCCCCCC---C-----CCCCCCCHHHHHHHHHHhcccccccccccCCcccEEeecC-CeEEEcCCCccCc
Q 002521 838 KQFTFILRDAGLLDEDG---G-----NNKLSHNQSLVRAVICSGLFPGITSVVHRETSMSFKTMDD-GQVFLYAVSVQVI 908 (913)
Q Consensus 838 ~ql~~~l~~~~l~~~~~---~-----~~~~s~~~~li~~~l~aGl~pnva~~~~~~~~~~y~t~~~-~~v~iHPsSv~~~ 908 (913)
+||.++|++.|++.... . .+.+..+..+|+++||+|||||||+.. +.+.|+|..+ ..|+|||+||+++
T Consensus 1 ~QL~~il~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~aG~~~nvA~~~---~~~~y~~~~~~~~v~iHPsS~l~~ 77 (114)
T PF07717_consen 1 KQLLRILERIGFVPQSASSQSISQRPPNENRDQWELIRAALCAGFYPNVARRD---NKGSYKTLSNGQPVFIHPSSVLFK 77 (114)
T ss_dssp HHHHHHHHHTT----------TTST-----HTHCHHHHHHHHHHHCCCEEEE----TTSSEEETTTG-EEEE-TTSTTTT
T ss_pred CHHHHHHHHcCCCCCccccccccccccccccccHHHHHHHHHHhhhhheEEeC---CCCCEEEecCCCEEEEecCccccc
Confidence 59999999999976542 1 111225668999999999999999765 3467999854 4599999999977
Q ss_pred CCC
Q 002521 909 VSN 911 (913)
Q Consensus 909 ~~~ 911 (913)
.++
T Consensus 78 ~~p 80 (114)
T PF07717_consen 78 KPP 80 (114)
T ss_dssp TT-
T ss_pred ccc
Confidence 655
No 152
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=98.82 E-value=5.1e-07 Score=110.46 Aligned_cols=128 Identities=13% Similarity=0.138 Sum_probs=81.2
Q ss_pred HHHHHHHhhhcCCCcEEEEcCChHHHHHHHHHHHcCCCCCCCCCeEEEEecCCCChHHHHHHhccC----CCCccEEEEe
Q 002521 516 EAVLCHICRKECPGAVLVFMTGWEDISCLRDQLKSHPLLGDPNRVLLLTCHGSMPTSEQKFIFEKA----PPNIRKIVLA 591 (913)
Q Consensus 516 ~~ll~~i~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f----~~g~~kVLVA 591 (913)
...+..++. . +|.+|||+++....+.++..|.... +..+ ..+|.. .+..+++.| ..|...||++
T Consensus 524 ~~~i~~l~~-~-~gg~LVlFtSy~~l~~v~~~l~~~~------~~~l-l~Q~~~---~~~~ll~~f~~~~~~~~~~VL~g 591 (697)
T PRK11747 524 AEFLPELLE-K-HKGSLVLFASRRQMQKVADLLPRDL------RLML-LVQGDQ---PRQRLLEKHKKRVDEGEGSVLFG 591 (697)
T ss_pred HHHHHHHHh-c-CCCEEEEeCcHHHHHHHHHHHHHhc------CCcE-EEeCCc---hHHHHHHHHHHHhccCCCeEEEE
Confidence 334455555 3 4558999999999999999987531 2223 335543 345566444 4577789999
Q ss_pred cchhhhcCCCCC--eEEEEeCCCCcceeecCC----------CCCCcCC--ccccCHhhHHHHhcccCCC--CCcEEEEe
Q 002521 592 TNMAEASITIND--IVFVVDCGKAKETTYDAL----------NNTPCLL--PSWISQASARQRRGRAGRV--QPGQCYHL 655 (913)
Q Consensus 592 Tniae~GIdIp~--v~~VId~g~~k~~~yd~~----------~~~~~l~--~~~iSka~~~QR~GRAGR~--~~G~c~~L 655 (913)
|..+.+|||+|+ +++||..++|...--|+. .+-..+. ..|-..-.+.|-+||.=|. -.|..+.|
T Consensus 592 ~~sf~EGVD~pGd~l~~vII~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~~D~G~i~il 671 (697)
T PRK11747 592 LQSFAEGLDLPGDYLTQVIITKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSEQDRGRVTIL 671 (697)
T ss_pred eccccccccCCCCceEEEEEEcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCCceEEEEEE
Confidence 999999999996 699999998843111111 0111111 1122233578999999998 44766665
No 153
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=98.78 E-value=6.4e-07 Score=109.89 Aligned_cols=137 Identities=20% Similarity=0.159 Sum_probs=88.5
Q ss_pred CCCcEEEEcCChHHHHHHHHHHHcCCCCCCCCCeEEEEecCCCChHHHHHHhccCCCCcc-EEEEecchhhhcCCCCCe-
Q 002521 527 CPGAVLVFMTGWEDISCLRDQLKSHPLLGDPNRVLLLTCHGSMPTSEQKFIFEKAPPNIR-KIVLATNMAEASITINDI- 604 (913)
Q Consensus 527 ~~g~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~g~~-kVLVATniae~GIdIp~v- 604 (913)
.+|++|||+++.+..+.+.+.+..... ......+|..+.. ..++.|+.+.- -++|+|..+.+|||+|+=
T Consensus 478 ~~~~~lvlF~Sy~~l~~~~~~~~~~~~------~~~v~~q~~~~~~---~~l~~f~~~~~~~~lv~~gsf~EGVD~~g~~ 548 (654)
T COG1199 478 SPGGVLVLFPSYEYLKRVAERLKDERS------TLPVLTQGEDERE---ELLEKFKASGEGLILVGGGSFWEGVDFPGDA 548 (654)
T ss_pred cCCCEEEEeccHHHHHHHHHHHhhcCc------cceeeecCCCcHH---HHHHHHHHhcCCeEEEeeccccCcccCCCCC
Confidence 356899999999999999999987521 1234556666555 44555554433 899999999999999965
Q ss_pred -EEEEeCCCCcceeecCC----------CC--CCcCCccccCHhhHHHHhcccCCC--CCcEEEEe---cChhhHHh-hh
Q 002521 605 -VFVVDCGKAKETTYDAL----------NN--TPCLLPSWISQASARQRRGRAGRV--QPGQCYHL---YPRCVYEA-FA 665 (913)
Q Consensus 605 -~~VId~g~~k~~~yd~~----------~~--~~~l~~~~iSka~~~QR~GRAGR~--~~G~c~~L---~t~~~~~~-l~ 665 (913)
..||..|+|-...-|+. .+ .-.+...+..--...|-+||+=|. .-|.++.| |....|.. ++
T Consensus 549 l~~vvI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ivllD~R~~~~~y~~~l~ 628 (654)
T COG1199 549 LRLVVIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIVLLDKRYATKRYGKLLL 628 (654)
T ss_pred eeEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEEEecccchhhhHHHHHH
Confidence 78888898854222221 11 111222334456778999999998 45777766 33444433 44
Q ss_pred hCCCCcc
Q 002521 666 EYQLPEL 672 (913)
Q Consensus 666 ~~~~pEi 672 (913)
+.-.+.+
T Consensus 629 ~~l~~~~ 635 (654)
T COG1199 629 DSLPPFP 635 (654)
T ss_pred HhCCCCc
Confidence 4443333
No 154
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=98.64 E-value=8.6e-06 Score=90.60 Aligned_cols=83 Identities=17% Similarity=0.207 Sum_probs=69.2
Q ss_pred cCCCcEEEEcCChHHHHHHHHHHHcCCCCCCCCCeEEEEecCCCChHHHHHHhccCCCCc-cE-EEEecchhhhcCCCCC
Q 002521 526 ECPGAVLVFMTGWEDISCLRDQLKSHPLLGDPNRVLLLTCHGSMPTSEQKFIFEKAPPNI-RK-IVLATNMAEASITIND 603 (913)
Q Consensus 526 ~~~g~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~g~-~k-VLVATniae~GIdIp~ 603 (913)
.++.+.+||+.-....+.+...+... ++..+-+.|..+..+|....+.|.... .+ -|++-..+..|+|+..
T Consensus 490 ~~~~KflVFaHH~~vLd~Iq~~~~~r-------~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tA 562 (689)
T KOG1000|consen 490 APPRKFLVFAHHQIVLDTIQVEVNKR-------KVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTA 562 (689)
T ss_pred CCCceEEEEehhHHHHHHHHHHHHHc-------CCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeec
Confidence 45678999999999999999999886 677788999999999999999997543 34 4678889999999999
Q ss_pred eEEEEeCCCCcc
Q 002521 604 IVFVVDCGKAKE 615 (913)
Q Consensus 604 v~~VId~g~~k~ 615 (913)
...||..-++.+
T Consensus 563 a~~VVFaEL~wn 574 (689)
T KOG1000|consen 563 ASVVVFAELHWN 574 (689)
T ss_pred cceEEEEEecCC
Confidence 999997666543
No 155
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=98.62 E-value=7.4e-06 Score=99.47 Aligned_cols=115 Identities=18% Similarity=0.268 Sum_probs=82.7
Q ss_pred CcEEEEcCChHHHHHHHHHHHcCCCCCCCCCeEEEEecCCCChHHHHHHhccCCCC-ccEEE-EecchhhhcCCCCCeEE
Q 002521 529 GAVLVFMTGWEDISCLRDQLKSHPLLGDPNRVLLLTCHGSMPTSEQKFIFEKAPPN-IRKIV-LATNMAEASITINDIVF 606 (913)
Q Consensus 529 g~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~g-~~kVL-VATniae~GIdIp~v~~ 606 (913)
.++||||.=+..+.-+.+-|.+.. .+.+.-..+.|+.++.+|.++.++|.++ .++|+ ++|-|.+-|+|+-+.+.
T Consensus 1341 HRiLIFcQlK~mlDlVekDL~k~~----mpsVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADT 1416 (1549)
T KOG0392|consen 1341 HRILIFCQLKSMLDLVEKDLFKKY----MPSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADT 1416 (1549)
T ss_pred ceeEEeeeHHHHHHHHHHHHhhhh----cCceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCce
Confidence 479999999998888877665431 1345566899999999999999999998 67765 68899999999999999
Q ss_pred EEeCCCCcceeecCCCCCCcCCccccCHhhHHHHhcccCCCCCcEEEEecChhhHH
Q 002521 607 VVDCGKAKETTYDALNNTPCLLPSWISQASARQRRGRAGRVQPGQCYHLYPRCVYE 662 (913)
Q Consensus 607 VId~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~~~G~c~~L~t~~~~~ 662 (913)
||...- .|+|-+.+ +++-|+-|.|-.+-=-+|||+++...+
T Consensus 1417 VVFvEH----DWNPMrDL-----------QAMDRAHRIGQKrvVNVyRlItrGTLE 1457 (1549)
T KOG0392|consen 1417 VVFVEH----DWNPMRDL-----------QAMDRAHRIGQKRVVNVYRLITRGTLE 1457 (1549)
T ss_pred EEEEec----CCCchhhH-----------HHHHHHHhhcCceeeeeeeehhcccHH
Confidence 886221 13333221 333444444444555689998887554
No 156
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=98.53 E-value=6.1e-07 Score=106.84 Aligned_cols=62 Identities=16% Similarity=0.120 Sum_probs=50.6
Q ss_pred HHHHHHHHcCCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHHHH
Q 002521 256 ERLLQAIARNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVSA 320 (913)
Q Consensus 256 ~~il~~i~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv~~ 320 (913)
+.+.+++.+++.+++.|+||+|||.+++++++..+... ...+|+|++||++|+.|+.+.+..
T Consensus 7 ~~i~~al~~~~~lliEA~TGtGKTlAYLlpal~~~~~~---~~~rvlIstpT~~Lq~Ql~~~l~~ 68 (636)
T TIGR03117 7 LNCLTSLRQKRIGMLEASTGVGKTLAMIMAALTMLKER---PDQKIAIAVPTLALMGQLWSELER 68 (636)
T ss_pred HHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHHHHhc---cCceEEEECCcHHHHHHHHHHHHH
Confidence 56777888899999999999999999999998766421 124778888999999999886644
No 157
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=98.41 E-value=2e-06 Score=94.68 Aligned_cols=132 Identities=17% Similarity=0.056 Sum_probs=73.6
Q ss_pred cCCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCC---ceEEEEcchhHHHHHHHHHHHHHHhCC-CcccEeeeEEec---
Q 002521 264 RNQVIVISGETGCGKTTQLPQYILESEIESGRGA---FCNIICTQPRRISAMAVSERVSAERGE-PLGETVGYKVRL--- 336 (913)
Q Consensus 264 ~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~---~~~Ilv~qPrr~La~qva~rv~~~~~~-~~g~~vGy~v~~--- 336 (913)
..+..+++-++|+|||.++..++.. +....... .+.|+| |. .+..++...+.+.... .. ..+-|....
T Consensus 24 ~~~g~lL~de~GlGKT~~~i~~~~~-l~~~~~~~~~~~~LIv~--P~-~l~~~W~~E~~~~~~~~~~-~v~~~~~~~~~~ 98 (299)
T PF00176_consen 24 PPRGGLLADEMGLGKTITAIALISY-LKNEFPQRGEKKTLIVV--PS-SLLSQWKEEIEKWFDPDSL-RVIIYDGDSERR 98 (299)
T ss_dssp TT-EEEE---TTSSHHHHHHHHHHH-HHHCCTTSS-S-EEEEE---T-TTHHHHHHHHHHHSGT-TS--EEEESSSCHHH
T ss_pred CCCCEEEEECCCCCchhhhhhhhhh-hhhccccccccceeEee--cc-chhhhhhhhhccccccccc-cccccccccccc
Confidence 4467888999999999888777653 22222221 245555 99 6667888888776632 22 111111111
Q ss_pred --cccCCCCceEEEEecHHHH--------HHHhcCCCCCCceEEEecccccc-CcchHHHHHHHHHhCccCccceEEEec
Q 002521 337 --EGMKGKNTHLLFCTSGILL--------RRLLSDHNLNGVTHVFVDEIHER-GMNEDFLLIVLKDLLPRRRDLRLILMS 405 (913)
Q Consensus 337 --e~~~~~~~~Ivv~T~g~Ll--------~~l~~~~~L~~~s~IIIDEaHer-~~~~d~ll~llk~ll~~~~~~kiIlmS 405 (913)
........+++++|.+.+. ..+. . -++++|||||+|.. +..+.....+ .. +. ....++||
T Consensus 99 ~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~---~-~~~~~vIvDEaH~~k~~~s~~~~~l-~~-l~---~~~~~lLS 169 (299)
T PF00176_consen 99 RLSKNQLPKYDVVITTYETLRKARKKKDKEDLK---Q-IKWDRVIVDEAHRLKNKDSKRYKAL-RK-LR---ARYRWLLS 169 (299)
T ss_dssp HTTSSSCCCSSEEEEEHHHHH--TSTHTTHHHH---T-SEEEEEEETTGGGGTTTTSHHHHHH-HC-CC---ECEEEEE-
T ss_pred cccccccccceeeeccccccccccccccccccc---c-ccceeEEEecccccccccccccccc-cc-cc---cceEEeec
Confidence 1222356789999999998 2222 1 34899999999964 3333333332 22 22 34688999
Q ss_pred cccC
Q 002521 406 ATLN 409 (913)
Q Consensus 406 ATl~ 409 (913)
||+-
T Consensus 170 gTP~ 173 (299)
T PF00176_consen 170 GTPI 173 (299)
T ss_dssp SS-S
T ss_pred cccc
Confidence 9983
No 158
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=98.37 E-value=1.5e-05 Score=93.30 Aligned_cols=114 Identities=18% Similarity=0.223 Sum_probs=89.3
Q ss_pred CCCcEEEEcCChHHHHHHHHHHHcCCCCCCCCCeEEEEecCCCChHHHHHHhccCCCCc--cEEEEecchhhhcCCCCCe
Q 002521 527 CPGAVLVFMTGWEDISCLRDQLKSHPLLGDPNRVLLLTCHGSMPTSEQKFIFEKAPPNI--RKIVLATNMAEASITINDI 604 (913)
Q Consensus 527 ~~g~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~g~--~kVLVATniae~GIdIp~v 604 (913)
.+.+||||-.-.....-+...|... ++...-+.|+..-.+|+.+++.|...+ .-+|++|-..+-|||+-..
T Consensus 776 ~G~RVLiFSQFTqmLDILE~~L~~l-------~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~A 848 (941)
T KOG0389|consen 776 KGDRVLIFSQFTQMLDILEVVLDTL-------GYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCA 848 (941)
T ss_pred cCCEEEEeeHHHHHHHHHHHHHHhc-------CceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceeccccc
Confidence 3468999977666666666667665 788889999999999999999997654 3568999999999999999
Q ss_pred EEEEeCCCCcceeecCCCCCCcCCccccCHhhHHHHhcccCCCCCcEEEEecChhhHH
Q 002521 605 VFVVDCGKAKETTYDALNNTPCLLPSWISQASARQRRGRAGRVQPGQCYHLYPRCVYE 662 (913)
Q Consensus 605 ~~VId~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~~~G~c~~L~t~~~~~ 662 (913)
+.||-.+.- |+|... -++.-|+-|.|-++|=.+|+|+++..-+
T Consensus 849 n~VIihD~d----FNP~dD-----------~QAEDRcHRvGQtkpVtV~rLItk~TIE 891 (941)
T KOG0389|consen 849 NTVIIHDID----FNPYDD-----------KQAEDRCHRVGQTKPVTVYRLITKSTIE 891 (941)
T ss_pred ceEEEeecC----CCCccc-----------chhHHHHHhhCCcceeEEEEEEecCcHH
Confidence 888874443 222222 2566788888888999999999987654
No 159
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.35 E-value=1.9e-05 Score=99.55 Aligned_cols=135 Identities=16% Similarity=0.104 Sum_probs=82.4
Q ss_pred CeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHHHHHhCCCcccE-eeeEEe-ccccCCCC
Q 002521 266 QVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVSAERGEPLGET-VGYKVR-LEGMKGKN 343 (913)
Q Consensus 266 ~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv~~~~~~~~g~~-vGy~v~-~e~~~~~~ 343 (913)
+.-+|.--||||||.....+. ..+... .....|++++-|+.|-.|+.+.++..-....-.. ..-.-. .+......
T Consensus 274 ~~G~IWHtqGSGKTlTm~~~A-~~l~~~--~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~~~~s~~~Lk~~l~~~~ 350 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFKLA-RLLLEL--PKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDPKAESTSELKELLEDGK 350 (962)
T ss_pred CceEEEeecCCchHHHHHHHH-HHHHhc--cCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcccccCHHHHHHHHhcCC
Confidence 358999999999996554332 333332 3345677777999999999999977432211100 000000 01112234
Q ss_pred ceEEEEecHHHHHHHhcCC---CCCCceEEEeccccccCcchHHHHHHHHHhCccCccceEEEecccc
Q 002521 344 THLLFCTSGILLRRLLSDH---NLNGVTHVFVDEIHERGMNEDFLLIVLKDLLPRRRDLRLILMSATL 408 (913)
Q Consensus 344 ~~Ivv~T~g~Ll~~l~~~~---~L~~~s~IIIDEaHer~~~~d~ll~llk~ll~~~~~~kiIlmSATl 408 (913)
..|+|+|-+.|-....... .-..==+||+|||| |+.....- ..++..++ +...+++|.|+
T Consensus 351 ~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaH-RSQ~G~~~-~~~~~~~~---~a~~~gFTGTP 413 (962)
T COG0610 351 GKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAH-RSQYGELA-KLLKKALK---KAIFIGFTGTP 413 (962)
T ss_pred CcEEEEEecccchhhhcccccccCCCcEEEEEechh-hccccHHH-HHHHHHhc---cceEEEeeCCc
Confidence 5899999999987775541 12223478999999 76655433 33344444 35799999998
No 160
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=98.12 E-value=0.0002 Score=79.86 Aligned_cols=126 Identities=15% Similarity=0.169 Sum_probs=84.9
Q ss_pred hHHHHHHHHh---hhcCCCcEEEEcCChHHHHHHHHHHHcCCCCCCCCCeEEEEecCCCChHHHHHHhccCCCCc--cEE
Q 002521 514 LIEAVLCHIC---RKECPGAVLVFMTGWEDISCLRDQLKSHPLLGDPNRVLLLTCHGSMPTSEQKFIFEKAPPNI--RKI 588 (913)
Q Consensus 514 li~~ll~~i~---~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~g~--~kV 588 (913)
.|+++...+. .+...-+.|||..-......+.-.|.+. |+.++.+-|+|++..|...++.|++.. +-.
T Consensus 621 KIEAL~EEl~~l~~rd~t~KsIVFSQFTSmLDLi~~rL~ka-------GfscVkL~GsMs~~ardatik~F~nd~~c~vf 693 (791)
T KOG1002|consen 621 KIEALVEELYFLRERDRTAKSIVFSQFTSMLDLIEWRLGKA-------GFSCVKLVGSMSPAARDATIKYFKNDIDCRVF 693 (791)
T ss_pred HHHHHHHHHHHHHHcccchhhhhHHHHHHHHHHHHHHhhcc-------CceEEEeccCCChHHHHHHHHHhccCCCeEEE
Confidence 4555544443 2333446788876666666666666664 899999999999999999999998752 344
Q ss_pred EEecchhhhcCCCCCeEEEEeCCCCcceeecCCCCCCcCCccccCHhhHHHHhcccCCCCCcEEEEecChhhH
Q 002521 589 VLATNMAEASITINDIVFVVDCGKAKETTYDALNNTPCLLPSWISQASARQRRGRAGRVQPGQCYHLYPRCVY 661 (913)
Q Consensus 589 LVATniae~GIdIp~v~~VId~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~~~G~c~~L~t~~~~ 661 (913)
|++-...+-.+|+-....|+. .||=.+.. -.-++.-|+-|.|..+|=++++++-+...
T Consensus 694 LvSLkAGGVALNLteASqVFm--------mDPWWNpa-------Ve~Qa~DRiHRIGQ~rPvkvvrf~iEnsi 751 (791)
T KOG1002|consen 694 LVSLKAGGVALNLTEASQVFM--------MDPWWNPA-------VEWQAQDRIHRIGQYRPVKVVRFCIENSI 751 (791)
T ss_pred EEEeccCceEeeechhceeEe--------ecccccHH-------HHhhhhhhHHhhcCccceeEEEeehhccH
Confidence 566677777788888888876 33322221 11134457777777789899998766543
No 161
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=98.04 E-value=0.00053 Score=78.29 Aligned_cols=116 Identities=15% Similarity=0.129 Sum_probs=88.5
Q ss_pred hcCCCcEEEEcCChHHHHHHHHHHHcCCCCCCCCCeEEEEecCCCChHHHHHHhccCCCCccEEEEecchh--hhcCCCC
Q 002521 525 KECPGAVLVFMTGWEDISCLRDQLKSHPLLGDPNRVLLLTCHGSMPTSEQKFIFEKAPPNIRKIVLATNMA--EASITIN 602 (913)
Q Consensus 525 ~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~g~~kVLVATnia--e~GIdIp 602 (913)
....+.+|||+|+.=+--++.+.|... ++....+|--.+..+-.++-..|..|+.+||+-|-=+ =+=..|.
T Consensus 297 ~~~~~~~LIfIPSYfDfVRlRN~lk~~-------~~sF~~i~EYts~~~isRAR~~F~~G~~~iLL~TER~HFfrRy~ir 369 (442)
T PF06862_consen 297 DSKMSGTLIFIPSYFDFVRLRNYLKKE-------NISFVQISEYTSNSDISRARSQFFHGRKPILLYTERFHFFRRYRIR 369 (442)
T ss_pred ccCCCcEEEEecchhhhHHHHHHHHhc-------CCeEEEecccCCHHHHHHHHHHHHcCCceEEEEEhHHhhhhhceec
Confidence 345678999999999999999999865 6778888888889998899999999999999999733 3446788
Q ss_pred CeEEEEeCCCCcceeecCCCCCCcCCccccCHhhHHHHhcccCC----CCCcEEEEecChhhHH
Q 002521 603 DIVFVVDCGKAKETTYDALNNTPCLLPSWISQASARQRRGRAGR----VQPGQCYHLYPRCVYE 662 (913)
Q Consensus 603 ~v~~VId~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR----~~~G~c~~L~t~~~~~ 662 (913)
++..||-+|+|..+.| .+++..+.+.... ...+.|..||++-+.-
T Consensus 370 Gi~~viFY~~P~~p~f---------------Y~El~n~~~~~~~~~~~~~~~~~~~lysk~D~~ 418 (442)
T PF06862_consen 370 GIRHVIFYGPPENPQF---------------YSELLNMLDESSGGEVDAADATVTVLYSKYDAL 418 (442)
T ss_pred CCcEEEEECCCCChhH---------------HHHHHhhhcccccccccccCceEEEEecHhHHH
Confidence 9999999998875553 1233333333322 2568999999986543
No 162
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=98.01 E-value=3.9e-05 Score=92.02 Aligned_cols=125 Identities=19% Similarity=0.124 Sum_probs=92.2
Q ss_pred hhHHHHHHHHhhh--cCCCcEEEEcCChHHHHHHHHHHHcCCCCCCCCCeEEEEecCCCChHHHHHHhccCC---CCccE
Q 002521 513 NLIEAVLCHICRK--ECPGAVLVFMTGWEDISCLRDQLKSHPLLGDPNRVLLLTCHGSMPTSEQKFIFEKAP---PNIRK 587 (913)
Q Consensus 513 ~li~~ll~~i~~~--~~~g~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~---~g~~k 587 (913)
..+..++..|+.+ ..++.||.|+....-..-+.++|.-. ++.-.-+.|....++|-..++.|. +....
T Consensus 709 sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~-------~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~ 781 (1157)
T KOG0386|consen 709 SGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIR-------EYKYLRLDGQTKVEERGDLLEIFNAPDSPYFI 781 (1157)
T ss_pred ccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhh-------hhheeeecCCcchhhHHHHHHHhcCCCCceee
Confidence 3445566666543 35688999999888888888888765 677778899999999877766664 44568
Q ss_pred EEEecchhhhcCCCCCeEEEEeCCCCcceeecCCCCCCcCCccccCHhhHHHHhcccCCC---CCcEEEEecChhhHH
Q 002521 588 IVLATNMAEASITINDIVFVVDCGKAKETTYDALNNTPCLLPSWISQASARQRRGRAGRV---QPGQCYHLYPRCVYE 662 (913)
Q Consensus 588 VLVATniae~GIdIp~v~~VId~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~---~~G~c~~L~t~~~~~ 662 (913)
.|++|-....|+|+.-.+.||. ||...+... ..|+.-||-|. +.-.+++|.+-..++
T Consensus 782 FllstragglglNlQtadtvii--------fdsdwnp~~----------d~qaqdrahrigq~~evRv~rl~tv~sve 841 (1157)
T KOG0386|consen 782 FLLSTRAGGLGLNLQTADTVII--------FDSDWNPHQ----------DLQAQDRAHRIGQKKEVRVLRLITVNSVE 841 (1157)
T ss_pred eeeeecccccccchhhcceEEE--------ecCCCCchh----------HHHHHHHHHHhhchhheeeeeeehhhHHH
Confidence 8999999999999998877776 666555443 34666666665 567788888876554
No 163
>PF13245 AAA_19: Part of AAA domain
Probab=97.93 E-value=3.3e-05 Score=66.84 Aligned_cols=60 Identities=28% Similarity=0.371 Sum_probs=45.4
Q ss_pred HHHHHHcCCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHH
Q 002521 258 LLQAIARNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERV 318 (913)
Q Consensus 258 il~~i~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv 318 (913)
+..++.+++.++|.||.|||||+.+...+.+........ ...|+|+.|++.++..+.+++
T Consensus 3 v~~al~~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~-~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 3 VRRALAGSPLFVVQGPPGTGKTTTLAARIAELLAARADP-GKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHHHhhCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCC-CCeEEEECCCHHHHHHHHHHH
Confidence 334666577788899999999988887777665322222 447888889999999998888
No 164
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.88 E-value=0.00013 Score=82.71 Aligned_cols=132 Identities=23% Similarity=0.255 Sum_probs=81.4
Q ss_pred cCCeEEEEcCCCchHHhHHHHHHHHHHHHh-CCCCceEEEEcchhHHHHHHHHHHHHHHhCCCcccEeeeEEeccccCCC
Q 002521 264 RNQVIVISGETGCGKTTQLPQYILESEIES-GRGAFCNIICTQPRRISAMAVSERVSAERGEPLGETVGYKVRLEGMKGK 342 (913)
Q Consensus 264 ~~~~vII~apTGSGKTt~~~~~ile~~~~~-~~~~~~~Ilv~qPrr~La~qva~rv~~~~~~~~g~~vGy~v~~e~~~~~ 342 (913)
...++++.||||+||||.+........... ..+....++.+=+.|..|....+.+++.+|.++
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv---------------- 236 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPV---------------- 236 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcce----------------
Confidence 346899999999999998877665433322 245566677777778888776666666444332
Q ss_pred CceEEEEecHHHHHHHhcCCCCCCceEEEeccccccCcchHHHHHHHHHhCc-cCcc-ceEEEeccccCHHHHHhhhC
Q 002521 343 NTHLLFCTSGILLRRLLSDHNLNGVTHVFVDEIHERGMNEDFLLIVLKDLLP-RRRD-LRLILMSATLNAELFSNYFG 418 (913)
Q Consensus 343 ~~~Ivv~T~g~Ll~~l~~~~~L~~~s~IIIDEaHer~~~~d~ll~llk~ll~-~~~~-~kiIlmSATl~~~~~~~yf~ 418 (913)
..+-++..+...+. .+.++++||||++. |.......+.-++.++. ..++ -.++.+|||.....+.+.|.
T Consensus 237 ---~~~~~~~~l~~~L~---~~~~~DlVLIDTaG-r~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~~ 307 (388)
T PRK12723 237 ---KAIESFKDLKEEIT---QSKDFDLVLVDTIG-KSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIFH 307 (388)
T ss_pred ---EeeCcHHHHHHHHH---HhCCCCEEEEcCCC-CCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHH
Confidence 11113444444443 24689999999999 43322222333334433 2223 36789999998776665553
No 165
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.85 E-value=2.8e-05 Score=74.39 Aligned_cols=118 Identities=24% Similarity=0.319 Sum_probs=64.8
Q ss_pred HcCCeEEEEcCCCchHHhHHHHHHHHHHHHh-CCCCceEEEEcchhHHHHHHHHHHHHHHhCCCcccEeeeEEeccccCC
Q 002521 263 ARNQVIVISGETGCGKTTQLPQYILESEIES-GRGAFCNIICTQPRRISAMAVSERVSAERGEPLGETVGYKVRLEGMKG 341 (913)
Q Consensus 263 ~~~~~vII~apTGSGKTt~~~~~ile~~~~~-~~~~~~~Ilv~qPrr~La~qva~rv~~~~~~~~g~~vGy~v~~e~~~~ 341 (913)
.+++.++|.|++|+|||+.+-.++.+..... .......+.+..|...-...++..+...++.....
T Consensus 2 ~~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~------------- 68 (131)
T PF13401_consen 2 QSQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS------------- 68 (131)
T ss_dssp -----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS-------------
T ss_pred CCCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc-------------
Confidence 3567899999999999998888776543211 01122334454465555666777777766654322
Q ss_pred CCceEEEEecH----HHHHHHhcCCCCCCceEEEeccccccCcchHHHHHHHHHhCccCccceEEEecc
Q 002521 342 KNTHLLFCTSG----ILLRRLLSDHNLNGVTHVFVDEIHERGMNEDFLLIVLKDLLPRRRDLRLILMSA 406 (913)
Q Consensus 342 ~~~~Ivv~T~g----~Ll~~l~~~~~L~~~s~IIIDEaHer~~~~d~ll~llk~ll~~~~~~kiIlmSA 406 (913)
-.|.. .+.+.+... ...+|||||+|+.. . +-.+..++.+.. ..++++|+..-
T Consensus 69 ------~~~~~~l~~~~~~~l~~~----~~~~lviDe~~~l~-~-~~~l~~l~~l~~-~~~~~vvl~G~ 124 (131)
T PF13401_consen 69 ------RQTSDELRSLLIDALDRR----RVVLLVIDEADHLF-S-DEFLEFLRSLLN-ESNIKVVLVGT 124 (131)
T ss_dssp ------TS-HHHHHHHHHHHHHHC----TEEEEEEETTHHHH-T-HHHHHHHHHHTC-SCBEEEEEEES
T ss_pred ------cCCHHHHHHHHHHHHHhc----CCeEEEEeChHhcC-C-HHHHHHHHHHHh-CCCCeEEEEEC
Confidence 11233 333333322 22799999999652 3 445555566666 56666666543
No 166
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=97.83 E-value=0.00014 Score=87.79 Aligned_cols=120 Identities=19% Similarity=0.122 Sum_probs=69.4
Q ss_pred cHHHHHHHHHHHHcCCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHHHHHhCCCcccEe
Q 002521 251 SFKEKERLLQAIARNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVSAERGEPLGETV 330 (913)
Q Consensus 251 ~~~~q~~il~~i~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv~~~~~~~~g~~v 330 (913)
...+--+++-.+.-+..-|.-.-||=|||+.+.+++.=..+. |.. .-+||+- -=||.--++.+...+. -+|.+|
T Consensus 79 ~~~~dVQliG~i~lh~g~iaEM~TGEGKTL~atlp~ylnaL~---gkg-VhvVTvN-dYLA~RDae~m~~l~~-~LGlsv 152 (822)
T COG0653 79 MRHFDVQLLGGIVLHLGDIAEMRTGEGKTLVATLPAYLNALA---GKG-VHVVTVN-DYLARRDAEWMGPLYE-FLGLSV 152 (822)
T ss_pred CChhhHHHhhhhhhcCCceeeeecCCchHHHHHHHHHHHhcC---CCC-cEEeeeh-HHhhhhCHHHHHHHHH-HcCCce
Confidence 334445677787777777889999999999888877654432 222 3444433 3333322333322221 245556
Q ss_pred eeEEec----cccCCCCceEEEEecHHH-----HHHHhc---CCCCCCceEEEecccc
Q 002521 331 GYKVRL----EGMKGKNTHLLFCTSGIL-----LRRLLS---DHNLNGVTHVFVDEIH 376 (913)
Q Consensus 331 Gy~v~~----e~~~~~~~~Ivv~T~g~L-----l~~l~~---~~~L~~~s~IIIDEaH 376 (913)
|..... +....-.++|+|+|..-| .+.+.. +.....+.+-||||++
T Consensus 153 G~~~~~m~~~ek~~aY~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvD 210 (822)
T COG0653 153 GVILAGMSPEEKRAAYACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVD 210 (822)
T ss_pred eeccCCCChHHHHHHHhcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchh
Confidence 554433 222334589999998443 332322 1255678888999988
No 167
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=97.82 E-value=8.6e-05 Score=91.29 Aligned_cols=65 Identities=20% Similarity=0.178 Sum_probs=45.6
Q ss_pred CceEEEEecHHHHHHHhcCC-CCCCceEEEecccccc--CcchHHHHHHHHHhCccCccceEEEeccccCH
Q 002521 343 NTHLLFCTSGILLRRLLSDH-NLNGVTHVFVDEIHER--GMNEDFLLIVLKDLLPRRRDLRLILMSATLNA 410 (913)
Q Consensus 343 ~~~Ivv~T~g~Ll~~l~~~~-~L~~~s~IIIDEaHer--~~~~d~ll~llk~ll~~~~~~kiIlmSATl~~ 410 (913)
...|+++||.+|..-|..+. .++.++.|||||||.- +...-|+..+ ....++..-|.+|||.+..
T Consensus 7 ~ggi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ahr~~~~~~eaFI~rl---yr~~n~~gfIkafSdsP~~ 74 (814)
T TIGR00596 7 EGGIFSITSRILVVDLLTGIIPPELITGILVLRADRIIESSQEAFILRL---YRQKNKTGFIKAFSDNPEA 74 (814)
T ss_pred cCCEEEEechhhHhHHhcCCCCHHHccEEEEeecccccccccHHHHHHH---HHHhCCCcceEEecCCCcc
Confidence 45799999999987776655 8999999999999942 2222333333 3334445568999999853
No 168
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=97.79 E-value=0.0013 Score=83.55 Aligned_cols=111 Identities=21% Similarity=0.301 Sum_probs=90.8
Q ss_pred cEEEEcCChHHHHHHHHHHHcCCCCCCCCCeEEEEecCCCChHHHHHHhccCCCC--ccEEEEecchhhhcCCCCCeEEE
Q 002521 530 AVLVFMTGWEDISCLRDQLKSHPLLGDPNRVLLLTCHGSMPTSEQKFIFEKAPPN--IRKIVLATNMAEASITINDIVFV 607 (913)
Q Consensus 530 ~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~g--~~kVLVATniae~GIdIp~v~~V 607 (913)
++|||.+-.....-+...+... ++....++|+++...|...++.|.++ ..-++++|-..+.|+|.-..+.|
T Consensus 713 kvlifsq~t~~l~il~~~l~~~-------~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~kagg~glnLt~a~~v 785 (866)
T COG0553 713 KVLIFSQFTPVLDLLEDYLKAL-------GIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLNLTGADTV 785 (866)
T ss_pred cEEEEeCcHHHHHHHHHHHHhc-------CCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecccccceeecccceE
Confidence 7999999999999999999886 46788999999999999999999986 55677888899999999999999
Q ss_pred EeCCCCcceeecCCCCCCcCCccccCHhhHHHHhcccCCCCCcEEEEecChhhHH
Q 002521 608 VDCGKAKETTYDALNNTPCLLPSWISQASARQRRGRAGRVQPGQCYHLYPRCVYE 662 (913)
Q Consensus 608 Id~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~~~G~c~~L~t~~~~~ 662 (913)
|. ||+..+.. -..++..|+-|.|+.++=..|++.++...+
T Consensus 786 i~--------~d~~wnp~-------~~~Qa~dRa~RigQ~~~v~v~r~i~~~tiE 825 (866)
T COG0553 786 IL--------FDPWWNPA-------VELQAIDRAHRIGQKRPVKVYRLITRGTIE 825 (866)
T ss_pred EE--------eccccChH-------HHHHHHHHHHHhcCcceeEEEEeecCCcHH
Confidence 98 55544433 223566666777777888999999987654
No 169
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.76 E-value=0.00012 Score=75.42 Aligned_cols=57 Identities=32% Similarity=0.443 Sum_probs=41.6
Q ss_pred CcHHHHHHHHHHHHcCCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHH
Q 002521 250 PSFKEKERLLQAIARNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRI 309 (913)
Q Consensus 250 P~~~~q~~il~~i~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~ 309 (913)
|....|..+++++..++.+++.||.|||||+.+....++.+.. +...+|+++-|...
T Consensus 4 p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~---g~~~kiii~Rp~v~ 60 (205)
T PF02562_consen 4 PKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKE---GEYDKIIITRPPVE 60 (205)
T ss_dssp --SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHT---TS-SEEEEEE-S--
T ss_pred CCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHh---CCCcEEEEEecCCC
Confidence 6778899999999999999999999999999999888887643 44568888777643
No 170
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.73 E-value=9.8e-05 Score=76.22 Aligned_cols=127 Identities=26% Similarity=0.341 Sum_probs=78.7
Q ss_pred CeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHHHHHhCCCcccEeeeEEeccccCCCCce
Q 002521 266 QVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVSAERGEPLGETVGYKVRLEGMKGKNTH 345 (913)
Q Consensus 266 ~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv~~~~~~~~g~~vGy~v~~e~~~~~~~~ 345 (913)
++++++||||+||||.+.......... +....++++-..|+-|.++-+.+++.++.++.. .+ .. .
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~---~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~-----~~---~~-~--- 66 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLK---GKKVALISADTYRIGAVEQLKTYAEILGVPFYV-----AR---TE-S--- 66 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHT---T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEE-----SS---TT-S---
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhc---cccceeecCCCCCccHHHHHHHHHHHhccccch-----hh---cc-h---
Confidence 478899999999999998877665432 566778888888999999889998876644211 00 00 0
Q ss_pred EEEEecHHHH-HHHhcCCCCCCceEEEeccccccCcchHHHHHHHHHhCcc-CccceEEEeccccCHHHH
Q 002521 346 LLFCTSGILL-RRLLSDHNLNGVTHVFVDEIHERGMNEDFLLIVLKDLLPR-RRDLRLILMSATLNAELF 413 (913)
Q Consensus 346 Ivv~T~g~Ll-~~l~~~~~L~~~s~IIIDEaHer~~~~d~ll~llk~ll~~-~~~~kiIlmSATl~~~~~ 413 (913)
.|..++ +.+. ....+++++|+||-+. |+.....++.-++.+... .+.--++.||||...+.+
T Consensus 67 ----~~~~~~~~~l~-~~~~~~~D~vlIDT~G-r~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~ 130 (196)
T PF00448_consen 67 ----DPAEIAREALE-KFRKKGYDLVLIDTAG-RSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDL 130 (196)
T ss_dssp ----CHHHHHHHHHH-HHHHTTSSEEEEEE-S-SSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHH
T ss_pred ----hhHHHHHHHHH-HHhhcCCCEEEEecCC-cchhhHHHHHHHHHHhhhcCCccceEEEecccChHHH
Confidence 122222 2221 1123568999999998 544443333334443332 455568889999965543
No 171
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.72 E-value=0.001 Score=74.54 Aligned_cols=130 Identities=24% Similarity=0.282 Sum_probs=94.1
Q ss_pred CCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHHHHHhCCCcccEeeeEEeccccCCCCc
Q 002521 265 NQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVSAERGEPLGETVGYKVRLEGMKGKNT 344 (913)
Q Consensus 265 ~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv~~~~~~~~g~~vGy~v~~e~~~~~~~ 344 (913)
++++.+.||||.||||.+........+. .+.....||-+=-.|+-|..+-+..++.+|.++
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~-~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~------------------ 263 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVML-KKKKKVAIITTDTYRIGAVEQLKTYADIMGVPL------------------ 263 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhh-ccCcceEEEEeccchhhHHHHHHHHHHHhCCce------------------
Confidence 6799999999999999888776665532 233455666676779988888888888776542
Q ss_pred eEEEEecHHHHHHHhcCCCCCCceEEEeccccccCcchHHHHHHHHHhCccCccc-eEEEeccccCHHHHHhhhC
Q 002521 345 HLLFCTSGILLRRLLSDHNLNGVTHVFVDEIHERGMNEDFLLIVLKDLLPRRRDL-RLILMSATLNAELFSNYFG 418 (913)
Q Consensus 345 ~Ivv~T~g~Ll~~l~~~~~L~~~s~IIIDEaHer~~~~d~ll~llk~ll~~~~~~-kiIlmSATl~~~~~~~yf~ 418 (913)
.++-+|.-|...+. .+.++++|.||=+- |+........-++.+.....++ -.+.+|||...+++..-+.
T Consensus 264 -~vv~~~~el~~ai~---~l~~~d~ILVDTaG-rs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlkei~~ 333 (407)
T COG1419 264 -EVVYSPKELAEAIE---ALRDCDVILVDTAG-RSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDLKEIIK 333 (407)
T ss_pred -EEecCHHHHHHHHH---HhhcCCEEEEeCCC-CCccCHHHHHHHHHHHhccccceEEEEEecCcchHHHHHHHH
Confidence 34556666666654 57888999999998 7766666666677766655444 4578999998777665543
No 172
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.70 E-value=0.00021 Score=73.89 Aligned_cols=61 Identities=30% Similarity=0.416 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHcC--CeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHH
Q 002521 252 FKEKERLLQAIARN--QVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSER 317 (913)
Q Consensus 252 ~~~q~~il~~i~~~--~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~r 317 (913)
...|.+++..+..+ +.++|.|+.|+|||+.+-. +.+.+... + ..|+++.||..++..+.+.
T Consensus 3 ~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l~~-~~~~~~~~--g--~~v~~~apT~~Aa~~L~~~ 65 (196)
T PF13604_consen 3 NEEQREAVRAILTSGDRVSVLQGPAGTGKTTLLKA-LAEALEAA--G--KRVIGLAPTNKAAKELREK 65 (196)
T ss_dssp -HHHHHHHHHHHHCTCSEEEEEESTTSTHHHHHHH-HHHHHHHT--T----EEEEESSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcCCeEEEEEECCCCCHHHHHHH-HHHHHHhC--C--CeEEEECCcHHHHHHHHHh
Confidence 45677777777543 4788999999999986544 44444332 2 4677778999988776655
No 173
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=97.67 E-value=0.00017 Score=88.23 Aligned_cols=102 Identities=27% Similarity=0.342 Sum_probs=73.2
Q ss_pred CCCcEEEEcCChHHHHHHHHHHHcCCCCCCCCCeEEEEecCCCChHHHHHHhccCCCCccEEEEecchhhhcCCCC----
Q 002521 527 CPGAVLVFMTGWEDISCLRDQLKSHPLLGDPNRVLLLTCHGSMPTSEQKFIFEKAPPNIRKIVLATNMAEASITIN---- 602 (913)
Q Consensus 527 ~~g~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~g~~kVLVATniae~GIdIp---- 602 (913)
.+.||||-+.+.+..+.+.++|... ++....|++.....|-..|-++-..| .|.||||+|++|-||.
T Consensus 627 ~GrPVLVGT~SVe~SE~lS~~L~~~-------gI~H~VLNAK~h~~EAeIVA~AG~~G--aVTIATNMAGRGTDIkLg~~ 697 (1112)
T PRK12901 627 AGRPVLVGTTSVEISELLSRMLKMR-------KIPHNVLNAKLHQKEAEIVAEAGQPG--TVTIATNMAGRGTDIKLSPE 697 (1112)
T ss_pred CCCCEEEEeCcHHHHHHHHHHHHHc-------CCcHHHhhccchhhHHHHHHhcCCCC--cEEEeccCcCCCcCcccchh
Confidence 5678999999999999999999986 44444455554444444444544444 5889999999999996
Q ss_pred ----CeEEEEeCCCCcceeecCCCCCCcCCccccCHhhHHHHhcccCCC-CCcEEEEe
Q 002521 603 ----DIVFVVDCGKAKETTYDALNNTPCLLPSWISQASARQRRGRAGRV-QPGQCYHL 655 (913)
Q Consensus 603 ----~v~~VId~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~-~~G~c~~L 655 (913)
+=-+||-+..+. |+---.|-+|||||. .||.+-.+
T Consensus 698 V~e~GGL~VIgTerhe------------------SrRID~QLrGRaGRQGDPGsS~f~ 737 (1112)
T PRK12901 698 VKAAGGLAIIGTERHE------------------SRRVDRQLRGRAGRQGDPGSSQFY 737 (1112)
T ss_pred hHHcCCCEEEEccCCC------------------cHHHHHHHhcccccCCCCCcceEE
Confidence 225677655555 444556999999999 67864433
No 174
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.58 E-value=0.0017 Score=78.19 Aligned_cols=140 Identities=21% Similarity=0.230 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHcCCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHHHHHhCCCcccEeee
Q 002521 253 KEKERLLQAIARNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVSAERGEPLGETVGY 332 (913)
Q Consensus 253 ~~q~~il~~i~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv~~~~~~~~g~~vGy 332 (913)
..|++.+.....++.++|+|++|+||||.+...+.. +.....+....|+++.||.-+|..+.+.+...... ++ .
T Consensus 155 d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v~~ll~~-l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~-~~----~ 228 (615)
T PRK10875 155 DWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAA-LIQLADGERCRIRLAAPTGKAAARLTESLGKALRQ-LP----L 228 (615)
T ss_pred HHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHH-HHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhhc-cc----c
Confidence 566667777778899999999999999987655543 22222233467888899999998887777542211 11 0
Q ss_pred EEeccccCCCCceEEEEecHHHHHHHhc-------CCCCCCceEEEeccccccCcchHHHHHHHHHhCccCccceEEEec
Q 002521 333 KVRLEGMKGKNTHLLFCTSGILLRRLLS-------DHNLNGVTHVFVDEIHERGMNEDFLLIVLKDLLPRRRDLRLILMS 405 (913)
Q Consensus 333 ~v~~e~~~~~~~~Ivv~T~g~Ll~~l~~-------~~~L~~~s~IIIDEaHer~~~~d~ll~llk~ll~~~~~~kiIlmS 405 (913)
. +... .....-..|--.|+..... ....-.+++|||||+- | ++...+..+++. + .++.|+|++.
T Consensus 229 ~---~~~~-~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaS-M-vd~~lm~~ll~a-l--~~~~rlIlvG 299 (615)
T PRK10875 229 T---DEQK-KRIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEAS-M-VDLPMMARLIDA-L--PPHARVIFLG 299 (615)
T ss_pred c---hhhh-hcCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHh-c-ccHHHHHHHHHh-c--ccCCEEEEec
Confidence 0 0000 0000112222222221110 1123456899999998 3 344444444443 2 3556888875
Q ss_pred cc
Q 002521 406 AT 407 (913)
Q Consensus 406 AT 407 (913)
=.
T Consensus 300 D~ 301 (615)
T PRK10875 300 DR 301 (615)
T ss_pred ch
Confidence 43
No 175
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.57 E-value=0.00088 Score=75.07 Aligned_cols=125 Identities=18% Similarity=0.196 Sum_probs=72.7
Q ss_pred CCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHHHHHhCCCcccEeeeEEeccccCCCCc
Q 002521 265 NQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVSAERGEPLGETVGYKVRLEGMKGKNT 344 (913)
Q Consensus 265 ~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv~~~~~~~~g~~vGy~v~~e~~~~~~~ 344 (913)
.+++.++||||+||||.+........ ..+....++-+=|-|+.+.+.....+...+..
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~---~~GkkVglI~aDt~RiaAvEQLk~yae~lgip------------------- 298 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFH---GKKKTVGFITTDHSRIGTVQQLQDYVKTIGFE------------------- 298 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHH---HcCCcEEEEecCCcchHHHHHHHHHhhhcCCc-------------------
Confidence 46889999999999998877665432 33445555555577766654444443322211
Q ss_pred eEEEEecHHHHHHHhcCCCCCCceEEEeccccccCcchHHHHHHHHHhC-ccCccceEEEeccccCHHH
Q 002521 345 HLLFCTSGILLRRLLSDHNLNGVTHVFVDEIHERGMNEDFLLIVLKDLL-PRRRDLRLILMSATLNAEL 412 (913)
Q Consensus 345 ~Ivv~T~g~Ll~~l~~~~~L~~~s~IIIDEaHer~~~~d~ll~llk~ll-~~~~~~kiIlmSATl~~~~ 412 (913)
-+...++..+.+.+..-..-.++++||||-+-....+.+.+..+ +.++ ...|+-.++.+|||.....
T Consensus 299 v~v~~d~~~L~~aL~~lk~~~~~DvVLIDTaGRs~kd~~lm~EL-~~~lk~~~PdevlLVLsATtk~~d 366 (436)
T PRK11889 299 VIAVRDEAAMTRALTYFKEEARVDYILIDTAGKNYRASETVEEM-IETMGQVEPDYICLTLSASMKSKD 366 (436)
T ss_pred EEecCCHHHHHHHHHHHHhccCCCEEEEeCccccCcCHHHHHHH-HHHHhhcCCCeEEEEECCccChHH
Confidence 12233666666655322222368999999998333333333333 3333 3345545677999985543
No 176
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.56 E-value=0.00074 Score=80.95 Aligned_cols=141 Identities=20% Similarity=0.212 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHcCCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHHHHHhCCCcccEeee
Q 002521 253 KEKERLLQAIARNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVSAERGEPLGETVGY 332 (913)
Q Consensus 253 ~~q~~il~~i~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv~~~~~~~~g~~vGy 332 (913)
..|+..+.....++.++|+|+.|+||||.+...+.............+|+++.||--+|..+.+.+...... +...
T Consensus 148 ~~Qk~A~~~al~~~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~~~~~-l~~~--- 223 (586)
T TIGR01447 148 NWQKVAVALALKSNFSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRKAVKN-LAAA--- 223 (586)
T ss_pred HHHHHHHHHHhhCCeEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHhhhcc-cccc---
Confidence 567778888888999999999999999987665433211111111247888899999998877776543211 1100
Q ss_pred EEeccccCCCCceEEEEecHHHHHHHhc-------CCCCCCceEEEeccccccCcchHHHHHHHHHhCccCccceEEEec
Q 002521 333 KVRLEGMKGKNTHLLFCTSGILLRRLLS-------DHNLNGVTHVFVDEIHERGMNEDFLLIVLKDLLPRRRDLRLILMS 405 (913)
Q Consensus 333 ~v~~e~~~~~~~~Ivv~T~g~Ll~~l~~-------~~~L~~~s~IIIDEaHer~~~~d~ll~llk~ll~~~~~~kiIlmS 405 (913)
.... ....+-..|-..|+..... ......+++|||||+= | ++...+..+++. + .++.|+|++.
T Consensus 224 ----~~~~-~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaS-M-vd~~l~~~ll~a-l--~~~~rlIlvG 293 (586)
T TIGR01447 224 ----EALI-AALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEAS-M-VDLPLMAKLLKA-L--PPNTKLILLG 293 (586)
T ss_pred ----hhhh-hccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccc-c-CCHHHHHHHHHh-c--CCCCEEEEEC
Confidence 0000 0001123333333322111 1123468999999998 2 344444444443 2 3456777765
Q ss_pred cc
Q 002521 406 AT 407 (913)
Q Consensus 406 AT 407 (913)
=.
T Consensus 294 D~ 295 (586)
T TIGR01447 294 DK 295 (586)
T ss_pred Ch
Confidence 43
No 177
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=97.56 E-value=0.00016 Score=83.20 Aligned_cols=64 Identities=19% Similarity=0.321 Sum_probs=51.1
Q ss_pred cHHHHHHHHHHHHcC-CeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHHH
Q 002521 251 SFKEKERLLQAIARN-QVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVS 319 (913)
Q Consensus 251 ~~~~q~~il~~i~~~-~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv~ 319 (913)
...+|.+++.....+ ...+|.||+|+|||+.+...|.+.+.. + .+|+|+.|+.+++..+.+|+.
T Consensus 186 ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~---~--k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 186 LNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVKQ---K--KRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred ccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHHc---C--CeEEEEcCchHHHHHHHHHhc
Confidence 346788888887777 678899999999998888777766532 1 379999999999999988754
No 178
>PRK10536 hypothetical protein; Provisional
Probab=97.54 E-value=0.00026 Score=75.15 Aligned_cols=60 Identities=32% Similarity=0.385 Sum_probs=48.1
Q ss_pred cCCCcHHHHHHHHHHHHcCCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHH
Q 002521 247 KSLPSFKEKERLLQAIARNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRI 309 (913)
Q Consensus 247 ~~lP~~~~q~~il~~i~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~ 309 (913)
.--|....|...+.++.++..+++.||+|||||+.+..+.++.+.. +...+|+++-|...
T Consensus 56 ~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~---~~~~kIiI~RP~v~ 115 (262)
T PRK10536 56 PILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIH---KDVDRIIVTRPVLQ 115 (262)
T ss_pred cccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhc---CCeeEEEEeCCCCC
Confidence 3457889999999999999999999999999999998888876643 22557777767643
No 179
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.53 E-value=0.00096 Score=75.17 Aligned_cols=127 Identities=22% Similarity=0.241 Sum_probs=76.7
Q ss_pred HcCCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHHHHHhCCCcccEeeeEEeccccCCC
Q 002521 263 ARNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVSAERGEPLGETVGYKVRLEGMKGK 342 (913)
Q Consensus 263 ~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv~~~~~~~~g~~vGy~v~~e~~~~~ 342 (913)
.++.+++++||||+||||.+..+........+. ....++.+-+.|+.+.+..+.+++.+|..+
T Consensus 135 ~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~-~~V~lit~D~~R~ga~EqL~~~a~~~gv~~---------------- 197 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFGA-SKVALLTTDSYRIGGHEQLRIFGKILGVPV---------------- 197 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCC-CeEEEEecccccccHHHHHHHHHHHcCCce----------------
Confidence 457899999999999999988777654432221 233444444556667766666666544321
Q ss_pred CceEEEEecHHHHHHHhcCCCCCCceEEEeccccccCcchHHHHHHHHHhCc-cCccceEEEeccccCHHHH
Q 002521 343 NTHLLFCTSGILLRRLLSDHNLNGVTHVFVDEIHERGMNEDFLLIVLKDLLP-RRRDLRLILMSATLNAELF 413 (913)
Q Consensus 343 ~~~Ivv~T~g~Ll~~l~~~~~L~~~s~IIIDEaHer~~~~d~ll~llk~ll~-~~~~~kiIlmSATl~~~~~ 413 (913)
..+.+++.+...+. .+.+.++|+||++- +....+.+...+..+.. ..+.-.++.+|||...+.+
T Consensus 198 ---~~~~~~~~l~~~l~---~l~~~DlVLIDTaG-~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l 262 (374)
T PRK14722 198 ---HAVKDGGDLQLALA---ELRNKHMVLIDTIG-MSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTL 262 (374)
T ss_pred ---EecCCcccHHHHHH---HhcCCCEEEEcCCC-CCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHH
Confidence 12233434433332 34678999999998 44444445455554433 2234468899999866543
No 180
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=97.49 E-value=0.00027 Score=77.62 Aligned_cols=76 Identities=16% Similarity=0.108 Sum_probs=55.1
Q ss_pred hhcCCCcHHHHHH----HHHHHHcCCeEEEEcCCCchHHhHHHHHHHHHHHHhCCC-CceEEEEcchhHHHHHHHHHHHH
Q 002521 245 FRKSLPSFKEKER----LLQAIARNQVIVISGETGCGKTTQLPQYILESEIESGRG-AFCNIICTQPRRISAMAVSERVS 319 (913)
Q Consensus 245 ~r~~lP~~~~q~~----il~~i~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~-~~~~Ilv~qPrr~La~qva~rv~ 319 (913)
+.++++.++.|.+ +...+..++.+++.+|||+|||++++.+++......+.. ...+|+++.+|..+..|....+.
T Consensus 3 ~~FPy~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~ 82 (289)
T smart00488 3 FYFPYEPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELR 82 (289)
T ss_pred ccCCCCCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHH
Confidence 3456666888888 666677899999999999999999999988665433321 12367777799888777655554
Q ss_pred H
Q 002521 320 A 320 (913)
Q Consensus 320 ~ 320 (913)
+
T Consensus 83 ~ 83 (289)
T smart00488 83 K 83 (289)
T ss_pred h
Confidence 3
No 181
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=97.49 E-value=0.00027 Score=77.62 Aligned_cols=76 Identities=16% Similarity=0.108 Sum_probs=55.1
Q ss_pred hhcCCCcHHHHHH----HHHHHHcCCeEEEEcCCCchHHhHHHHHHHHHHHHhCCC-CceEEEEcchhHHHHHHHHHHHH
Q 002521 245 FRKSLPSFKEKER----LLQAIARNQVIVISGETGCGKTTQLPQYILESEIESGRG-AFCNIICTQPRRISAMAVSERVS 319 (913)
Q Consensus 245 ~r~~lP~~~~q~~----il~~i~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~-~~~~Ilv~qPrr~La~qva~rv~ 319 (913)
+.++++.++.|.+ +...+..++.+++.+|||+|||++++.+++......+.. ...+|+++.+|..+..|....+.
T Consensus 3 ~~FPy~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~ 82 (289)
T smart00489 3 FYFPYEPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELR 82 (289)
T ss_pred ccCCCCCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHH
Confidence 3456666888888 666677899999999999999999999988665433321 12367777799888777655554
Q ss_pred H
Q 002521 320 A 320 (913)
Q Consensus 320 ~ 320 (913)
+
T Consensus 83 ~ 83 (289)
T smart00489 83 K 83 (289)
T ss_pred h
Confidence 3
No 182
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=97.45 E-value=0.0099 Score=69.62 Aligned_cols=109 Identities=12% Similarity=0.206 Sum_probs=74.6
Q ss_pred EEEcCChHHH-HHHHHHHHcCCCCCCCCCeEEEEecCCCChHHHHHHhccCC---CCccEEEEecchhhhcCCCCCeEEE
Q 002521 532 LVFMTGWEDI-SCLRDQLKSHPLLGDPNRVLLLTCHGSMPTSEQKFIFEKAP---PNIRKIVLATNMAEASITINDIVFV 607 (913)
Q Consensus 532 LVF~~~~~~i-~~l~~~L~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~---~g~~kVLVATniae~GIdIp~v~~V 607 (913)
+|.+.-|..+ .-+...|... ++....+||.....+|+.+++.|. .|.+-.|++-...+-|+|+-+.+++
T Consensus 749 ~viVSQwtsvLniv~~hi~~~-------g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHl 821 (901)
T KOG4439|consen 749 VVIVSQWTSVLNIVRKHIQKG-------GHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHL 821 (901)
T ss_pred eeehhHHHHHHHHHHHHHhhC-------CeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceE
Confidence 3444555443 3344555554 677888999999999999999884 3456667788888999999999999
Q ss_pred EeCCCCcceeecCCCCCCcCCccccCHhhHHHHhcccCCCCCcEEEEecChhhHH
Q 002521 608 VDCGKAKETTYDALNNTPCLLPSWISQASARQRRGRAGRVQPGQCYHLYPRCVYE 662 (913)
Q Consensus 608 Id~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~~~G~c~~L~t~~~~~ 662 (913)
|..|+. |++. =-.++--|+=|.|-..+-+.|++..+..-+
T Consensus 822 ilvDlH----WNPa-----------LEqQAcDRIYR~GQkK~V~IhR~~~~gTvE 861 (901)
T KOG4439|consen 822 ILVDLH----WNPA-----------LEQQACDRIYRMGQKKDVFIHRLMCKGTVE 861 (901)
T ss_pred EEEecc----cCHH-----------HHHHHHHHHHHhcccCceEEEEEEecCcHH
Confidence 986554 2221 123444566677777777888887665443
No 183
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.37 E-value=0.0025 Score=73.61 Aligned_cols=128 Identities=20% Similarity=0.231 Sum_probs=75.9
Q ss_pred cCCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHHHHHhCCCcccEeeeEEeccccCCCC
Q 002521 264 RNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVSAERGEPLGETVGYKVRLEGMKGKN 343 (913)
Q Consensus 264 ~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv~~~~~~~~g~~vGy~v~~e~~~~~~ 343 (913)
.+.++++.||||+||||.+..++...... ..+..+.++-+-|.|..+......++..++..+
T Consensus 220 ~~~~i~~vGptGvGKTTt~~kLA~~~~~~-~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~----------------- 281 (424)
T PRK05703 220 QGGVVALVGPTGVGKTTTLAKLAARYALL-YGKKKVALITLDTYRIGAVEQLKTYAKIMGIPV----------------- 281 (424)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHh-cCCCeEEEEECCccHHHHHHHHHHHHHHhCCce-----------------
Confidence 46789999999999999888766554311 234455666666778776655555555444221
Q ss_pred ceEEEEecHHHHHHHhcCCCCCCceEEEeccccccCcchHHHHHHHHHhCc--cCccceEEEeccccCHHHHHh
Q 002521 344 THLLFCTSGILLRRLLSDHNLNGVTHVFVDEIHERGMNEDFLLIVLKDLLP--RRRDLRLILMSATLNAELFSN 415 (913)
Q Consensus 344 ~~Ivv~T~g~Ll~~l~~~~~L~~~s~IIIDEaHer~~~~d~ll~llk~ll~--~~~~~kiIlmSATl~~~~~~~ 415 (913)
....++.-+...+. .+.++++||||.+-....+... ...++.++. ..+.-..+++|||.....+..
T Consensus 282 --~~~~~~~~l~~~l~---~~~~~DlVlIDt~G~~~~d~~~-~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~ 349 (424)
T PRK05703 282 --EVVYDPKELAKALE---QLRDCDVILIDTAGRSQRDKRL-IEELKALIEFSGEPIDVYLVLSATTKYEDLKD 349 (424)
T ss_pred --EccCCHHhHHHHHH---HhCCCCEEEEeCCCCCCCCHHH-HHHHHHHHhccCCCCeEEEEEECCCCHHHHHH
Confidence 11234444555443 2457899999999733333222 222333333 233345788999997665543
No 184
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.36 E-value=0.0015 Score=73.14 Aligned_cols=131 Identities=17% Similarity=0.186 Sum_probs=77.9
Q ss_pred cCCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHHHHHhCCCcccEeeeEEeccccCCCC
Q 002521 264 RNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVSAERGEPLGETVGYKVRLEGMKGKN 343 (913)
Q Consensus 264 ~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv~~~~~~~~g~~vGy~v~~e~~~~~~ 343 (913)
.+++++++||||+||||.+........ .++..+.++.+=|.|..|...-+..++..+..
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~---~~g~~V~lItaDtyR~gAveQLk~yae~lgvp------------------ 263 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLL---KQNRTVGFITTDTFRSGAVEQFQGYADKLDVE------------------ 263 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---HcCCeEEEEeCCccCccHHHHHHHHhhcCCCC------------------
Confidence 367889999999999998887765432 23455666667677876655444444432221
Q ss_pred ceEEEEecHHHHHHHhcCCCCCCceEEEeccccccCcchHHHHHHHHHhCc-cCccceEEEeccccCHHHHHhhh
Q 002521 344 THLLFCTSGILLRRLLSDHNLNGVTHVFVDEIHERGMNEDFLLIVLKDLLP-RRRDLRLILMSATLNAELFSNYF 417 (913)
Q Consensus 344 ~~Ivv~T~g~Ll~~l~~~~~L~~~s~IIIDEaHer~~~~d~ll~llk~ll~-~~~~~kiIlmSATl~~~~~~~yf 417 (913)
-.+..+|.-+.+.+..-....++++||||=+-....+.+.+.. ++.+.. ..++.-++.+|||.......+.+
T Consensus 264 -v~~~~dp~dL~~al~~l~~~~~~D~VLIDTAGr~~~d~~~l~E-L~~l~~~~~p~~~~LVLsag~~~~d~~~i~ 336 (407)
T PRK12726 264 -LIVATSPAELEEAVQYMTYVNCVDHILIDTVGRNYLAEESVSE-ISAYTDVVHPDLTCFTFSSGMKSADVMTIL 336 (407)
T ss_pred -EEecCCHHHHHHHHHHHHhcCCCCEEEEECCCCCccCHHHHHH-HHHHhhccCCceEEEECCCcccHHHHHHHH
Confidence 1112356666554432223457899999998733333333333 333332 34555677889988766555543
No 185
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.27 E-value=0.00053 Score=77.67 Aligned_cols=92 Identities=24% Similarity=0.266 Sum_probs=59.8
Q ss_pred CeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHHHHHhCCCcccEeeeEEeccccCCCCce
Q 002521 266 QVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVSAERGEPLGETVGYKVRLEGMKGKNTH 345 (913)
Q Consensus 266 ~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv~~~~~~~~g~~vGy~v~~e~~~~~~~~ 345 (913)
++++|.|..|||||+.+...+.+. .....+....++| +...+...+.+.+.... ......
T Consensus 2 ~v~~I~G~aGTGKTvla~~l~~~l-~~~~~~~~~~~l~--~n~~l~~~l~~~l~~~~-----------------~~~~~~ 61 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALNLAKEL-QNSEEGKKVLYLC--GNHPLRNKLREQLAKKY-----------------NPKLKK 61 (352)
T ss_pred eEEEEEecCCcCHHHHHHHHHHHh-hccccCCceEEEE--ecchHHHHHHHHHhhhc-----------------ccchhh
Confidence 578999999999998887666554 1123344445555 88888888877776533 001122
Q ss_pred EEEEecHHHHHHHh-cCCCCCCceEEEeccccc
Q 002521 346 LLFCTSGILLRRLL-SDHNLNGVTHVFVDEIHE 377 (913)
Q Consensus 346 Ivv~T~g~Ll~~l~-~~~~L~~~s~IIIDEaHe 377 (913)
..+..+..+...+. .......+++|||||||.
T Consensus 62 ~~~~~~~~~i~~~~~~~~~~~~~DviivDEAqr 94 (352)
T PF09848_consen 62 SDFRKPTSFINNYSESDKEKNKYDVIIVDEAQR 94 (352)
T ss_pred hhhhhhHHHHhhcccccccCCcCCEEEEehhHh
Confidence 33445555554443 334678899999999994
No 186
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.22 E-value=0.0021 Score=79.19 Aligned_cols=128 Identities=23% Similarity=0.239 Sum_probs=76.5
Q ss_pred hcCCCcHHHHHHHHHHHHcCCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHHHHHhCCC
Q 002521 246 RKSLPSFKEKERLLQAIARNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVSAERGEP 325 (913)
Q Consensus 246 r~~lP~~~~q~~il~~i~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv~~~~~~~ 325 (913)
.....+...|.+++..+..++.++|+|+.|+||||.+-. +++.+... +....|+++.||--+|..+ .+..|..
T Consensus 319 ~~~~~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l~~-i~~~~~~~--~~~~~v~l~ApTg~AA~~L----~e~~g~~ 391 (720)
T TIGR01448 319 KLRKGLSEEQKQALDTAIQHKVVILTGGPGTGKTTITRA-IIELAEEL--GGLLPVGLAAPTGRAAKRL----GEVTGLT 391 (720)
T ss_pred hcCCCCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHHHH-HHHHHHHc--CCCceEEEEeCchHHHHHH----HHhcCCc
Confidence 345667888999999999999999999999999987753 33333222 2124677778998888644 3322211
Q ss_pred cccEeeeEEeccccCCCCceEEEEecHHHHHHHh------cCCCCCCceEEEeccccccCcchHHHHHHHHHhCccCccc
Q 002521 326 LGETVGYKVRLEGMKGKNTHLLFCTSGILLRRLL------SDHNLNGVTHVFVDEIHERGMNEDFLLIVLKDLLPRRRDL 399 (913)
Q Consensus 326 ~g~~vGy~v~~e~~~~~~~~Ivv~T~g~Ll~~l~------~~~~L~~~s~IIIDEaHer~~~~d~ll~llk~ll~~~~~~ 399 (913)
-.|-..++.... ........++|||||++. +....+..+++. + .++.
T Consensus 392 ----------------------a~Tih~lL~~~~~~~~~~~~~~~~~~~llIvDEaSM--vd~~~~~~Ll~~-~--~~~~ 444 (720)
T TIGR01448 392 ----------------------ASTIHRLLGYGPDTFRHNHLEDPIDCDLLIVDESSM--MDTWLALSLLAA-L--PDHA 444 (720)
T ss_pred ----------------------cccHHHHhhccCCccchhhhhccccCCEEEEecccc--CCHHHHHHHHHh-C--CCCC
Confidence 011111211100 001234578999999993 344444444442 2 3466
Q ss_pred eEEEeccc
Q 002521 400 RLILMSAT 407 (913)
Q Consensus 400 kiIlmSAT 407 (913)
|+|++.=+
T Consensus 445 rlilvGD~ 452 (720)
T TIGR01448 445 RLLLVGDT 452 (720)
T ss_pred EEEEECcc
Confidence 88877544
No 187
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.20 E-value=0.0032 Score=60.37 Aligned_cols=33 Identities=27% Similarity=0.304 Sum_probs=23.6
Q ss_pred HHHHHHHHHc--CCeEEEEcCCCchHHhHHHHHHH
Q 002521 255 KERLLQAIAR--NQVIVISGETGCGKTTQLPQYIL 287 (913)
Q Consensus 255 q~~il~~i~~--~~~vII~apTGSGKTt~~~~~il 287 (913)
..++...+.. +..++|.||+|+|||+.+-..+.
T Consensus 7 ~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~ 41 (151)
T cd00009 7 IEALREALELPPPKNLLLYGPPGTGKTTLARAIAN 41 (151)
T ss_pred HHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 3445555555 77899999999999976654443
No 188
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=97.18 E-value=0.00016 Score=87.31 Aligned_cols=153 Identities=16% Similarity=0.153 Sum_probs=96.8
Q ss_pred CeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHHHHHhCCCcccEeeeE---EeccccCCC
Q 002521 266 QVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVSAERGEPLGETVGYK---VRLEGMKGK 342 (913)
Q Consensus 266 ~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv~~~~~~~~g~~vGy~---v~~e~~~~~ 342 (913)
.++++-+|||+|||..+...+..... ..+.++++++.|-.+|...-.++..+..... |..++-. +.-+-..-.
T Consensus 944 ~~~~~g~ptgsgkt~~ae~a~~~~~~---~~p~~kvvyIap~kalvker~~Dw~~r~~~~-g~k~ie~tgd~~pd~~~v~ 1019 (1230)
T KOG0952|consen 944 LNFLLGAPTGSGKTVVAELAIFRALS---YYPGSKVVYIAPDKALVKERSDDWSKRDELP-GIKVIELTGDVTPDVKAVR 1019 (1230)
T ss_pred hhhhhcCCccCcchhHHHHHHHHHhc---cCCCccEEEEcCCchhhcccccchhhhcccC-CceeEeccCccCCChhhee
Confidence 45677899999999999988876553 3344789999999999988887776654433 3222210 111111124
Q ss_pred CceEEEEecHHHHHHHh---cCCCCCCceEEEeccccccCcc----hHHHHHHHHH-hCccCccceEEEecccc-CHHHH
Q 002521 343 NTHLLFCTSGILLRRLL---SDHNLNGVTHVFVDEIHERGMN----EDFLLIVLKD-LLPRRRDLRLILMSATL-NAELF 413 (913)
Q Consensus 343 ~~~Ivv~T~g~Ll~~l~---~~~~L~~~s~IIIDEaHer~~~----~d~ll~llk~-ll~~~~~~kiIlmSATl-~~~~~ 413 (913)
+++|+++||+....... +...+.+++.+|+||.|.-|-. .+.+...... -....+.++++++|--+ ++.++
T Consensus 1020 ~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~~rgPVle~ivsr~n~~s~~t~~~vr~~glsta~~na~dl 1099 (1230)
T KOG0952|consen 1020 EADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGEDRGPVLEVIVSRMNYISSQTEEPVRYLGLSTALANANDL 1099 (1230)
T ss_pred cCceEEcccccccCccccccchhhhccccceeecccccccCCCcceEEEEeeccccCccccCcchhhhhHhhhhhccHHH
Confidence 57999999987765443 3347889999999999943322 1111111111 01122346777766544 88899
Q ss_pred HhhhCCCCe
Q 002521 414 SNYFGGAPT 422 (913)
Q Consensus 414 ~~yf~~~~~ 422 (913)
++|++-.+.
T Consensus 1100 a~wl~~~~~ 1108 (1230)
T KOG0952|consen 1100 ADWLNIKDM 1108 (1230)
T ss_pred HHHhCCCCc
Confidence 999985444
No 189
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=97.17 E-value=0.0029 Score=68.12 Aligned_cols=121 Identities=17% Similarity=0.127 Sum_probs=70.9
Q ss_pred CCCcHHHHHHHHHHHHcCCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHHHHHhCCCcc
Q 002521 248 SLPSFKEKERLLQAIARNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVSAERGEPLG 327 (913)
Q Consensus 248 ~lP~~~~q~~il~~i~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv~~~~~~~~g 327 (913)
.+..+..|--..-++..|+ |+...||=|||+++.++..-.. -.|..+-|++ ...-||..=++.+...+. .+|
T Consensus 75 g~~p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~A---L~G~~V~vvT--~NdyLA~RD~~~~~~~y~-~LG 146 (266)
T PF07517_consen 75 GLRPYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNA---LQGKGVHVVT--SNDYLAKRDAEEMRPFYE-FLG 146 (266)
T ss_dssp S----HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHH---TTSS-EEEEE--SSHHHHHHHHHHHHHHHH-HTT
T ss_pred CCcccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHH---HhcCCcEEEe--ccHHHhhccHHHHHHHHH-Hhh
Confidence 3444444443333444444 7788999999988877765444 3556666666 666787766666655433 356
Q ss_pred cEeeeEEecccc----CCCCceEEEEecHHHH-HHHhcC----C---CCCCceEEEecccc
Q 002521 328 ETVGYKVRLEGM----KGKNTHLLFCTSGILL-RRLLSD----H---NLNGVTHVFVDEIH 376 (913)
Q Consensus 328 ~~vGy~v~~e~~----~~~~~~Ivv~T~g~Ll-~~l~~~----~---~L~~~s~IIIDEaH 376 (913)
..||+....... ..-..+|+|+|...+. +.|... . ....+.++||||||
T Consensus 147 lsv~~~~~~~~~~~r~~~Y~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvD 207 (266)
T PF07517_consen 147 LSVGIITSDMSSEERREAYAADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVD 207 (266)
T ss_dssp --EEEEETTTEHHHHHHHHHSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHH
T ss_pred hccccCccccCHHHHHHHHhCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccc
Confidence 666655432221 1123689999997664 334322 1 35789999999999
No 190
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=97.17 E-value=0.00059 Score=68.68 Aligned_cols=120 Identities=18% Similarity=0.145 Sum_probs=73.4
Q ss_pred CCCcEEEEcCChHHHHHHHHHHHcCCCCCCCCCeEEEEecCCCChHHHHHHhccCCCCccEEEEecc--hhhhcCCCCC-
Q 002521 527 CPGAVLVFMTGWEDISCLRDQLKSHPLLGDPNRVLLLTCHGSMPTSEQKFIFEKAPPNIRKIVLATN--MAEASITIND- 603 (913)
Q Consensus 527 ~~g~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~g~~kVLVATn--iae~GIdIp~- 603 (913)
.+|.+|||+|+....+.+.+.+...... .++.+.. . ...+...+++.|+.+.-.|++|+. .+.+|||+|+
T Consensus 8 ~~g~~lv~f~Sy~~l~~~~~~~~~~~~~---~~~~v~~-q---~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~~ 80 (167)
T PF13307_consen 8 VPGGVLVFFPSYRRLEKVYERLKERLEE---KGIPVFV-Q---GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPGD 80 (167)
T ss_dssp CSSEEEEEESSHHHHHHHHTT-TSS-E----ETSCEEE-S---TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--ECE
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhhccc---ccceeee-c---CcchHHHHHHHHHhccCeEEEEEecccEEEeecCCCc
Confidence 3588999999999999999988764210 1222222 2 355778888999999999999998 9999999996
Q ss_pred -eEEEEeCCCCcceeecCCC-------------CCCcCCccccCHhhHHHHhcccCCCCCcEEEE
Q 002521 604 -IVFVVDCGKAKETTYDALN-------------NTPCLLPSWISQASARQRRGRAGRVQPGQCYH 654 (913)
Q Consensus 604 -v~~VId~g~~k~~~yd~~~-------------~~~~l~~~~iSka~~~QR~GRAGR~~~G~c~~ 654 (913)
++.||-.|+|....-|+.. ... ....+-.--...|-+||+=|.....+..
T Consensus 81 ~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~a~~~l~Qa~GR~iR~~~D~g~i 144 (167)
T PF13307_consen 81 LLRAVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFR-DWYLPPAIRKLKQAIGRLIRSEDDYGVI 144 (167)
T ss_dssp SEEEEEEES-----TTCHHHHHHHHHHHHCCTTCHH-HHTHHHHHHHHHHHHHCC--STT-EEEE
T ss_pred hhheeeecCCCCCCCCCHHHHHHHHHHHHHhccchh-hHhhHHHHHHHhhhcCcceeccCCcEEE
Confidence 6899999998533222210 011 1112223345779999999995544333
No 191
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=97.17 E-value=0.00098 Score=82.38 Aligned_cols=139 Identities=19% Similarity=0.225 Sum_probs=78.5
Q ss_pred cCCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHHH-----HHhCCCcc-cEeeeEEecc
Q 002521 264 RNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVS-----AERGEPLG-ETVGYKVRLE 337 (913)
Q Consensus 264 ~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv~-----~~~~~~~g-~~vGy~v~~e 337 (913)
.+.++.+.++||+|||..+...|++..... +..++|+++|+.+.-..+.+.+. ..+....+ ..+-+.+--.
T Consensus 58 ~~~n~~~~M~TGtGKT~~~~~~i~~l~~~~---~~~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~~~~S 134 (986)
T PRK15483 58 DKANIDIKMETGTGKTYVYTRLMYELHQKY---GLFKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELYVINA 134 (986)
T ss_pred ccceEEEEeCCCCCHHHHHHHHHHHHHHHc---CCcEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEEEEec
Confidence 346889999999999999888887754322 23467777799888777765543 12222121 1122221110
Q ss_pred c----------------------cCCCCceEEEEecHHHHHHHhc-----------C--C--CCCC-ceEEEeccccccC
Q 002521 338 G----------------------MKGKNTHLLFCTSGILLRRLLS-----------D--H--NLNG-VTHVFVDEIHERG 379 (913)
Q Consensus 338 ~----------------------~~~~~~~Ivv~T~g~Ll~~l~~-----------~--~--~L~~-~s~IIIDEaHer~ 379 (913)
. .......|+|+|.+.|-..... . + .+.. =-+|||||.|...
T Consensus 135 ~k~~k~gr~~~~~~i~~Fa~~~~~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiDEPh~~~ 214 (986)
T PRK15483 135 GDKKKSGRKNFPAQLSNFVKASRQNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIIDEPHRFP 214 (986)
T ss_pred CcccccccccChHHHHHHHhccccCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHhCCCEEEEECCCCCC
Confidence 0 0011468999999988653210 0 0 1111 1379999999653
Q ss_pred cchHHHHHHHHHhCccCccceEEEeccccCH
Q 002521 380 MNEDFLLIVLKDLLPRRRDLRLILMSATLNA 410 (913)
Q Consensus 380 ~~~d~ll~llk~ll~~~~~~kiIlmSATl~~ 410 (913)
-.... .+.+...+|.. ++.+|||.+.
T Consensus 215 ~~~k~----~~~i~~lnpl~-~lrysAT~~~ 240 (986)
T PRK15483 215 RDNKF----YQAIEALKPQM-IIRFGATFPD 240 (986)
T ss_pred cchHH----HHHHHhcCccc-EEEEeeecCC
Confidence 22111 12333444433 6779999864
No 192
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=97.13 E-value=0.0019 Score=67.38 Aligned_cols=129 Identities=15% Similarity=0.245 Sum_probs=82.8
Q ss_pred HHhhhcCCCcHHHHHHHHHHHHc---CCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHH
Q 002521 242 MLDFRKSLPSFKEKERLLQAIAR---NQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERV 318 (913)
Q Consensus 242 l~~~r~~lP~~~~q~~il~~i~~---~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv 318 (913)
+++...++=+.+.|.++...+.+ +.+.+...-+|.|||+++. |++-..+.++. .-++++| |. .|..|..+.+
T Consensus 15 l~E~e~~iliR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsVI~-Pmla~~LAdg~-~LvrviV--pk-~Ll~q~~~~L 89 (229)
T PF12340_consen 15 LFEIESNILIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSVIV-PMLALALADGS-RLVRVIV--PK-ALLEQMRQML 89 (229)
T ss_pred HHHHHcCceeeHHHHHHHHHHhCCCCCCCeEeeecccCCccchHH-HHHHHHHcCCC-cEEEEEc--CH-HHHHHHHHHH
Confidence 55677888888899999998876 4688999999999998765 44444443332 2334444 74 6788888888
Q ss_pred HHHhCCCcccEeeeEEeccccCC-----------------CCceEEEEecHHHHHHHhc-------CC------------
Q 002521 319 SAERGEPLGETVGYKVRLEGMKG-----------------KNTHLLFCTSGILLRRLLS-------DH------------ 362 (913)
Q Consensus 319 ~~~~~~~~g~~vGy~v~~e~~~~-----------------~~~~Ivv~T~g~Ll~~l~~-------~~------------ 362 (913)
...+|.-++..+ |...|+.... ....|+++||+.++..... ..
T Consensus 90 ~~~lg~l~~r~i-~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~L~~le~l~~~~~~~~~~l~~~q~ 168 (229)
T PF12340_consen 90 RSRLGGLLNRRI-YHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFKLKGLERLQDGKPEEARELLKIQK 168 (229)
T ss_pred HHHHHHHhCCee-EEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 776665444433 3333332211 2456999999887653311 10
Q ss_pred CCCCceEEEecccc
Q 002521 363 NLNGVTHVFVDEIH 376 (913)
Q Consensus 363 ~L~~~s~IIIDEaH 376 (913)
++.....=|+||+|
T Consensus 169 ~l~~~~rdilDEsD 182 (229)
T PF12340_consen 169 WLDEHSRDILDESD 182 (229)
T ss_pred HHHhcCCeEeECch
Confidence 34445566888888
No 193
>PRK06526 transposase; Provisional
Probab=97.11 E-value=0.007 Score=65.11 Aligned_cols=30 Identities=20% Similarity=0.276 Sum_probs=23.5
Q ss_pred HHHHcCCeEEEEcCCCchHHhHHHHHHHHH
Q 002521 260 QAIARNQVIVISGETGCGKTTQLPQYILES 289 (913)
Q Consensus 260 ~~i~~~~~vII~apTGSGKTt~~~~~ile~ 289 (913)
+.+..+.+++++||+|+|||+.+.....+.
T Consensus 93 ~fi~~~~nlll~Gp~GtGKThLa~al~~~a 122 (254)
T PRK06526 93 DFVTGKENVVFLGPPGTGKTHLAIGLGIRA 122 (254)
T ss_pred chhhcCceEEEEeCCCCchHHHHHHHHHHH
Confidence 445677899999999999998776655443
No 194
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.00 E-value=0.0043 Score=72.26 Aligned_cols=128 Identities=20% Similarity=0.202 Sum_probs=68.7
Q ss_pred HcCCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHHHHHhCCCcccEeeeEEeccccCCC
Q 002521 263 ARNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVSAERGEPLGETVGYKVRLEGMKGK 342 (913)
Q Consensus 263 ~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv~~~~~~~~g~~vGy~v~~e~~~~~ 342 (913)
..+++++++||||+||||.+..+....... ..+....++-+-+.|..+..........+ |..+.
T Consensus 348 ~~G~vIaLVGPtGvGKTTtaakLAa~la~~-~~gkkVaLIdtDtyRigA~EQLk~ya~iL--------gv~v~------- 411 (559)
T PRK12727 348 ERGGVIALVGPTGAGKTTTIAKLAQRFAAQ-HAPRDVALVTTDTQRVGGREQLHSYGRQL--------GIAVH------- 411 (559)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHHHHh-cCCCceEEEecccccccHHHHHHHhhccc--------CceeE-------
Confidence 357899999999999999887666543322 22233444445455665544333332211 11111
Q ss_pred CceEEEEecHHHHHHHhcCCCCCCceEEEeccccccCcchHHHHHHHHHhCccCccceEEEeccccCHHHHH
Q 002521 343 NTHLLFCTSGILLRRLLSDHNLNGVTHVFVDEIHERGMNEDFLLIVLKDLLPRRRDLRLILMSATLNAELFS 414 (913)
Q Consensus 343 ~~~Ivv~T~g~Ll~~l~~~~~L~~~s~IIIDEaHer~~~~d~ll~llk~ll~~~~~~kiIlmSATl~~~~~~ 414 (913)
...+++.+...+. .+.++++||||.+-....+ ..+...+..+........+++++++.....+.
T Consensus 412 ----~a~d~~~L~~aL~---~l~~~DLVLIDTaG~s~~D-~~l~eeL~~L~aa~~~a~lLVLpAtss~~Dl~ 475 (559)
T PRK12727 412 ----EADSAESLLDLLE---RLRDYKLVLIDTAGMGQRD-RALAAQLNWLRAARQVTSLLVLPANAHFSDLD 475 (559)
T ss_pred ----ecCcHHHHHHHHH---HhccCCEEEecCCCcchhh-HHHHHHHHHHHHhhcCCcEEEEECCCChhHHH
Confidence 0123444555543 3457899999999833222 22222222222222334688889988655443
No 195
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=96.98 E-value=0.005 Score=75.19 Aligned_cols=114 Identities=23% Similarity=0.277 Sum_probs=97.8
Q ss_pred CCCcEEEEcCChHHHHHHHHHHHcCCCCCCCCCeEEEEecCCCChHHHHHHhccCCCCcc--EEEEecchhhhcCCCCCe
Q 002521 527 CPGAVLVFMTGWEDISCLRDQLKSHPLLGDPNRVLLLTCHGSMPTSEQKFIFEKAPPNIR--KIVLATNMAEASITINDI 604 (913)
Q Consensus 527 ~~g~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~g~~--kVLVATniae~GIdIp~v 604 (913)
.+.++|||..-.....-|...|..+ ++.-+-+.|....++|+..++.|....+ ..|++|-.-..|||+-+.
T Consensus 1275 eghRvLIfTQMtkmLDVLeqFLnyH-------gylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSggvGiNLtgA 1347 (1958)
T KOG0391|consen 1275 EGHRVLIFTQMTKMLDVLEQFLNYH-------GYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGGVGINLTGA 1347 (1958)
T ss_pred cCceEEehhHHHHHHHHHHHHHhhc-------ceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCccccccccC
Confidence 4568999999999888888888887 8889999999999999999999987654 678999999999999999
Q ss_pred EEEEeCCCCcceeecCCCCCCcCCccccCHhhHHHHhcccCCCCCcEEEEecChhhHH
Q 002521 605 VFVVDCGKAKETTYDALNNTPCLLPSWISQASARQRRGRAGRVQPGQCYHLYPRCVYE 662 (913)
Q Consensus 605 ~~VId~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~~~G~c~~L~t~~~~~ 662 (913)
+.||. ||...|-. --+.+.-|+-|.|+++.=+.|||+++...+
T Consensus 1348 DTVvF--------YDsDwNPt-------MDaQAQDrChRIGqtRDVHIYRLISe~TIE 1390 (1958)
T KOG0391|consen 1348 DTVVF--------YDSDWNPT-------MDAQAQDRCHRIGQTRDVHIYRLISERTIE 1390 (1958)
T ss_pred ceEEE--------ecCCCCch-------hhhHHHHHHHhhcCccceEEEEeeccchHH
Confidence 99998 77665533 345788899999999999999999987654
No 196
>PF05729 NACHT: NACHT domain
Probab=96.94 E-value=0.0017 Score=64.33 Aligned_cols=61 Identities=21% Similarity=0.314 Sum_probs=38.4
Q ss_pred EEEeccccccCcchH-----HHHHHHHHhCcc--CccceEEEeccccCHHHHHhhhCCCCeeccCCcc
Q 002521 369 HVFVDEIHERGMNED-----FLLIVLKDLLPR--RRDLRLILMSATLNAELFSNYFGGAPTIHIPGFT 429 (913)
Q Consensus 369 ~IIIDEaHer~~~~d-----~ll~llk~ll~~--~~~~kiIlmSATl~~~~~~~yf~~~~~i~i~g~~ 429 (913)
+||||=++|...... .....+..++.. .++.++++.|.+-....+..++.....+.+++..
T Consensus 84 llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~ 151 (166)
T PF05729_consen 84 LLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFS 151 (166)
T ss_pred EEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCC
Confidence 488888886543222 234445555544 6778888888776666677777766666665543
No 197
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=96.94 E-value=0.0016 Score=68.41 Aligned_cols=69 Identities=20% Similarity=0.248 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHcCCe-EEEEcCCCchHHhHHHHHHHHHHHH---hCCCCceEEEEcchhHHHHHHHHHHHHH
Q 002521 252 FKEKERLLQAIARNQV-IVISGETGCGKTTQLPQYILESEIE---SGRGAFCNIICTQPRRISAMAVSERVSA 320 (913)
Q Consensus 252 ~~~q~~il~~i~~~~~-vII~apTGSGKTt~~~~~ile~~~~---~~~~~~~~Ilv~qPrr~La~qva~rv~~ 320 (913)
...|.+++..+..... .+|.||.|+|||+.+...+...... .......+|+++.|+..++..+.+++.+
T Consensus 3 n~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 3 NESQREAIQSALSSNGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp -HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHcCCCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 4678888888888886 9999999999998777666554110 0122345788888999999999999877
No 198
>PRK14974 cell division protein FtsY; Provisional
Probab=96.94 E-value=0.0051 Score=68.68 Aligned_cols=125 Identities=18% Similarity=0.214 Sum_probs=68.3
Q ss_pred CCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHHHHHhCCCcccEeeeEEeccccCCCCc
Q 002521 265 NQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVSAERGEPLGETVGYKVRLEGMKGKNT 344 (913)
Q Consensus 265 ~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv~~~~~~~~g~~vGy~v~~e~~~~~~~ 344 (913)
..+++++|++|+||||.+..+... +. ..+..+.++.+-+.|..+....+..+..+|..+.. + ....
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~-l~--~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~--~-------~~g~-- 205 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYY-LK--KNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIK--H-------KYGA-- 205 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH-HH--HcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceec--c-------cCCC--
Confidence 458899999999999987766532 22 22333333333345666655555555655543211 0 0001
Q ss_pred eEEEEec-HHHHHHHhcCCCCCCceEEEeccccccCcchHHHHHHHHHhCc-cCccceEEEeccccCH
Q 002521 345 HLLFCTS-GILLRRLLSDHNLNGVTHVFVDEIHERGMNEDFLLIVLKDLLP-RRRDLRLILMSATLNA 410 (913)
Q Consensus 345 ~Ivv~T~-g~Ll~~l~~~~~L~~~s~IIIDEaHer~~~~d~ll~llk~ll~-~~~~~kiIlmSATl~~ 410 (913)
.| .++.+.+... ...++++||||.++....+.+++..+ +.+.. ..|+..++.++||...
T Consensus 206 -----dp~~v~~~ai~~~-~~~~~DvVLIDTaGr~~~~~~lm~eL-~~i~~~~~pd~~iLVl~a~~g~ 266 (336)
T PRK14974 206 -----DPAAVAYDAIEHA-KARGIDVVLIDTAGRMHTDANLMDEL-KKIVRVTKPDLVIFVGDALAGN 266 (336)
T ss_pred -----CHHHHHHHHHHHH-HhCCCCEEEEECCCccCCcHHHHHHH-HHHHHhhCCceEEEeeccccch
Confidence 11 1122222110 22467899999999443344444343 33322 4577788999998743
No 199
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=96.91 E-value=0.0031 Score=68.18 Aligned_cols=139 Identities=17% Similarity=0.132 Sum_probs=78.1
Q ss_pred CCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHHHHHhCCCcccEeeeEEeccccCCCCc
Q 002521 265 NQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVSAERGEPLGETVGYKVRLEGMKGKNT 344 (913)
Q Consensus 265 ~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv~~~~~~~~g~~vGy~v~~e~~~~~~~ 344 (913)
..-.++--.||.||--++.-.|++..+.. .. +.|.+...-.|-....+.+...-+..+-..--..........-..
T Consensus 62 R~Gf~lGDGtGvGKGR~iAgiI~~n~l~G---r~-r~vwvS~s~dL~~Da~RDl~DIG~~~i~v~~l~~~~~~~~~~~~~ 137 (303)
T PF13872_consen 62 RAGFFLGDGTGVGKGRQIAGIILENWLRG---RK-RAVWVSVSNDLKYDAERDLRDIGADNIPVHPLNKFKYGDIIRLKE 137 (303)
T ss_pred CcEEEeccCCCcCccchhHHHHHHHHHcC---CC-ceEEEECChhhhhHHHHHHHHhCCCcccceechhhccCcCCCCCC
Confidence 45677777899999999999999987642 22 333334566676666666665322221110000111111112234
Q ss_pred eEEEEecHHHHHHHhcCC-----------CC--CCceEEEeccccccC-cch------HHHHHHHHHhCccCccceEEEe
Q 002521 345 HLLFCTSGILLRRLLSDH-----------NL--NGVTHVFVDEIHERG-MNE------DFLLIVLKDLLPRRRDLRLILM 404 (913)
Q Consensus 345 ~Ivv~T~g~Ll~~l~~~~-----------~L--~~~s~IIIDEaHer~-~~~------d~ll~llk~ll~~~~~~kiIlm 404 (913)
.|+|+|...|...-.... ++ +-=.+||+||||... ... ..-.. ...+...-|+.+++.+
T Consensus 138 GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~akn~~~~~~~~sk~g~a-vl~LQ~~LP~ARvvY~ 216 (303)
T PF13872_consen 138 GVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHKAKNLSSGSKKPSKTGIA-VLELQNRLPNARVVYA 216 (303)
T ss_pred CccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccchhcCCCCccCccccHHHHH-HHHHHHhCCCCcEEEe
Confidence 699999988876643211 11 112589999999532 211 11111 1233344567789999
Q ss_pred cccc
Q 002521 405 SATL 408 (913)
Q Consensus 405 SATl 408 (913)
|||-
T Consensus 217 SATg 220 (303)
T PF13872_consen 217 SATG 220 (303)
T ss_pred cccc
Confidence 9996
No 200
>PRK04296 thymidine kinase; Provisional
Probab=96.86 E-value=0.0061 Score=62.69 Aligned_cols=26 Identities=31% Similarity=0.372 Sum_probs=21.8
Q ss_pred CCeEEEEcCCCchHHhHHHHHHHHHH
Q 002521 265 NQVIVISGETGCGKTTQLPQYILESE 290 (913)
Q Consensus 265 ~~~vII~apTGSGKTt~~~~~ile~~ 290 (913)
+..++++||+|+||||.+..++.+..
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~~~ 27 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYNYE 27 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHHH
Confidence 45789999999999999988877654
No 201
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.85 E-value=0.011 Score=67.12 Aligned_cols=112 Identities=13% Similarity=0.105 Sum_probs=75.3
Q ss_pred CCcEEEEcCChHHHHHHHHHHHcCCCCCCCCCeEEEEecCCCChHHHHHHhccCCCCccEEEEecchh--hhcCCCCCeE
Q 002521 528 PGAVLVFMTGWEDISCLRDQLKSHPLLGDPNRVLLLTCHGSMPTSEQKFIFEKAPPNIRKIVLATNMA--EASITINDIV 605 (913)
Q Consensus 528 ~g~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~g~~kVLVATnia--e~GIdIp~v~ 605 (913)
...|||+.|+.-+--++...+... .+....+|--.+.+.-.+.-+-|-.|...|++-|.-+ =+--+|.+|.
T Consensus 552 ~s~~LiyIPSYfDFVRvRNy~K~e-------~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER~hffrR~~ikGVk 624 (698)
T KOG2340|consen 552 ESGILIYIPSYFDFVRVRNYMKKE-------EISFVMINEYSSKSKVSRARELFFQGRKSVLLYTERAHFFRRYHIKGVK 624 (698)
T ss_pred cCceEEEecchhhHHHHHHHhhhh-------hcchHHHhhhhhHhhhhHHHHHHHhcCceEEEEehhhhhhhhheeccee
Confidence 345999999999999998888775 2222233333333333444556778999999999744 3567899999
Q ss_pred EEEeCCCCcceeecCCCCCCcCCccccCHhhHHHHhcccCCCC-----CcEEEEecChhhH
Q 002521 606 FVVDCGKAKETTYDALNNTPCLLPSWISQASARQRRGRAGRVQ-----PGQCYHLYPRCVY 661 (913)
Q Consensus 606 ~VId~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~~-----~G~c~~L~t~~~~ 661 (913)
-||.+++|..+.| .++.+.+.||+.-.+ .-.|-.||++-+-
T Consensus 625 ~vVfYqpP~~P~F---------------YsEiinm~~k~~~~gn~d~d~~t~~ilytKyD~ 670 (698)
T KOG2340|consen 625 NVVFYQPPNNPHF---------------YSEIINMSDKTTSQGNTDLDIFTVRILYTKYDR 670 (698)
T ss_pred eEEEecCCCCcHH---------------HHHHHhhhhhhhccCCccccceEEEEEeechhh
Confidence 9999666654432 346777887764332 2478889998543
No 202
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.83 E-value=0.0096 Score=67.75 Aligned_cols=122 Identities=20% Similarity=0.235 Sum_probs=73.4
Q ss_pred CCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHHHHHhCCCcccEeeeEEeccccCCCCc
Q 002521 265 NQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVSAERGEPLGETVGYKVRLEGMKGKNT 344 (913)
Q Consensus 265 ~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv~~~~~~~~g~~vGy~v~~e~~~~~~~ 344 (913)
+.+++++||||+||||.+..++..... ..|..+.++-+-+.|..+.....+.+...+..+.
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~--~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~----------------- 283 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFL--HMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFY----------------- 283 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH--hcCCeEEEecccchhhhHHHHHHHHHHhcCCCee-----------------
Confidence 457889999999999999988865433 2344556666778888888877777665443210
Q ss_pred eEEEEecHHHHHHHhcCCCCCCceEEEeccccccCcchHHHHHHHHHhCc----cCccceEEEeccccCHHH
Q 002521 345 HLLFCTSGILLRRLLSDHNLNGVTHVFVDEIHERGMNEDFLLIVLKDLLP----RRRDLRLILMSATLNAEL 412 (913)
Q Consensus 345 ~Ivv~T~g~Ll~~l~~~~~L~~~s~IIIDEaHer~~~~d~ll~llk~ll~----~~~~~kiIlmSATl~~~~ 412 (913)
.+.....+...+. -.++++||||=+-....+.+.+.. +..++. ..+.-.++.+|||...+.
T Consensus 284 --~~~~~~~l~~~l~----~~~~D~VLIDTaGr~~rd~~~l~e-L~~~~~~~~~~~~~e~~LVLsAt~~~~~ 348 (432)
T PRK12724 284 --PVKDIKKFKETLA----RDGSELILIDTAGYSHRNLEQLER-MQSFYSCFGEKDSVENLLVLSSTSSYHH 348 (432)
T ss_pred --ehHHHHHHHHHHH----hCCCCEEEEeCCCCCccCHHHHHH-HHHHHHhhcCCCCCeEEEEEeCCCCHHH
Confidence 0111233444442 157899999976522122222222 222222 123346889999996643
No 203
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=96.81 E-value=0.002 Score=71.21 Aligned_cols=69 Identities=20% Similarity=0.232 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHcCCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHHHHHhC
Q 002521 252 FKEKERLLQAIARNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVSAERG 323 (913)
Q Consensus 252 ~~~q~~il~~i~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv~~~~~ 323 (913)
...|.+++.. .++.++|.|..|||||+++..-+...+. .+....-.|+|+++|+.+|..+.+|+...++
T Consensus 2 ~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~-~~~~~~~~Il~lTft~~aa~e~~~ri~~~l~ 70 (315)
T PF00580_consen 2 TDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLY-EGGVPPERILVLTFTNAAAQEMRERIRELLE 70 (315)
T ss_dssp -HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHH-TSSSTGGGEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhc-cccCChHHheecccCHHHHHHHHHHHHHhcC
Confidence 3567777777 6778889999999999988876665543 3324455799999999999999999988544
No 204
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=96.79 E-value=0.017 Score=71.66 Aligned_cols=123 Identities=20% Similarity=0.191 Sum_probs=73.5
Q ss_pred CCCcHHHHHHHHHHHHc-CCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHHHHHhCCCc
Q 002521 248 SLPSFKEKERLLQAIAR-NQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVSAERGEPL 326 (913)
Q Consensus 248 ~lP~~~~q~~il~~i~~-~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv~~~~~~~~ 326 (913)
...+...|.+++..+.. ++.++|.|+.|+||||.+-. +.+.+.. .| ..|+++.||--+|..+. ...|..
T Consensus 350 ~~~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll~~-i~~~~~~--~g--~~V~~~ApTg~Aa~~L~----~~~g~~- 419 (744)
T TIGR02768 350 HYRLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTMLKA-AREAWEA--AG--YRVIGAALSGKAAEGLQ----AESGIE- 419 (744)
T ss_pred cCCCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHHHH-HHHHHHh--CC--CeEEEEeCcHHHHHHHH----hccCCc-
Confidence 35567788888888776 57999999999999987654 3333322 22 35777789987775543 211210
Q ss_pred ccEeeeEEeccccCCCCceEEEEecHHHHHHHhcC-CCCCCceEEEeccccccCcchHHHHHHHHHhCccCccceEEEec
Q 002521 327 GETVGYKVRLEGMKGKNTHLLFCTSGILLRRLLSD-HNLNGVTHVFVDEIHERGMNEDFLLIVLKDLLPRRRDLRLILMS 405 (913)
Q Consensus 327 g~~vGy~v~~e~~~~~~~~Ivv~T~g~Ll~~l~~~-~~L~~~s~IIIDEaHer~~~~d~ll~llk~ll~~~~~~kiIlmS 405 (913)
-.|-..++..+..+ ..+...++|||||+--. ..+.+..+++.... .+.++|++.
T Consensus 420 ---------------------a~Ti~~~~~~~~~~~~~~~~~~llIvDEasMv--~~~~~~~Ll~~~~~--~~~kliLVG 474 (744)
T TIGR02768 420 ---------------------SRTLASLEYAWANGRDLLSDKDVLVIDEAGMV--GSRQMARVLKEAEE--AGAKVVLVG 474 (744)
T ss_pred ---------------------eeeHHHHHhhhccCcccCCCCcEEEEECcccC--CHHHHHHHHHHHHh--cCCEEEEEC
Confidence 11333332222222 24678899999999833 33444444443332 345777765
No 205
>PRK08181 transposase; Validated
Probab=96.78 E-value=0.045 Score=59.37 Aligned_cols=115 Identities=15% Similarity=0.176 Sum_probs=61.2
Q ss_pred HHHcCCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHHHHHhCCCcccEeeeEEeccccC
Q 002521 261 AIARNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVSAERGEPLGETVGYKVRLEGMK 340 (913)
Q Consensus 261 ~i~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv~~~~~~~~g~~vGy~v~~e~~~ 340 (913)
.+..++++++.||+|+|||..+..+..+.+ . .|. .++++ +...|..++.....
T Consensus 102 ~~~~~~nlll~Gp~GtGKTHLa~Aia~~a~-~--~g~--~v~f~-~~~~L~~~l~~a~~--------------------- 154 (269)
T PRK08181 102 WLAKGANLLLFGPPGGGKSHLAAAIGLALI-E--NGW--RVLFT-RTTDLVQKLQVARR--------------------- 154 (269)
T ss_pred HHhcCceEEEEecCCCcHHHHHHHHHHHHH-H--cCC--ceeee-eHHHHHHHHHHHHh---------------------
Confidence 456788999999999999977665444332 2 222 34443 33344443321100
Q ss_pred CCCceEEEEecHHHHHHHhcCCCCCCceEEEeccccccCcch---HHHHHHHHHhCccCccceEEEeccccCHHHHHhhh
Q 002521 341 GKNTHLLFCTSGILLRRLLSDHNLNGVTHVFVDEIHERGMNE---DFLLIVLKDLLPRRRDLRLILMSATLNAELFSNYF 417 (913)
Q Consensus 341 ~~~~~Ivv~T~g~Ll~~l~~~~~L~~~s~IIIDEaHer~~~~---d~ll~llk~ll~~~~~~kiIlmSATl~~~~~~~yf 417 (913)
. .+...+++. +.++++|||||++...... +.+..++..... . +-+++|.-.+...+...|
T Consensus 155 -~------~~~~~~l~~------l~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~---~-~s~IiTSN~~~~~w~~~~ 217 (269)
T PRK08181 155 -E------LQLESAIAK------LDKFDLLILDDLAYVTKDQAETSVLFELISARYE---R-RSILITANQPFGEWNRVF 217 (269)
T ss_pred -C------CcHHHHHHH------HhcCCEEEEeccccccCCHHHHHHHHHHHHHHHh---C-CCEEEEcCCCHHHHHHhc
Confidence 0 122223333 3568999999999543322 223333332222 2 235555555666666666
Q ss_pred CC
Q 002521 418 GG 419 (913)
Q Consensus 418 ~~ 419 (913)
++
T Consensus 218 ~D 219 (269)
T PRK08181 218 PD 219 (269)
T ss_pred CC
Confidence 54
No 206
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.74 E-value=0.0047 Score=70.22 Aligned_cols=58 Identities=21% Similarity=0.347 Sum_probs=41.7
Q ss_pred HHHHHHHHHHH------HcCCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHH
Q 002521 252 FKEKERLLQAI------ARNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAV 314 (913)
Q Consensus 252 ~~~q~~il~~i------~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qv 314 (913)
...|+.+++.+ ..+.++.|.|+-|+|||+.+-.++- .+ +.....+++++||-.+|..+
T Consensus 3 n~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~-~~----~~~~~~~~~~a~tg~AA~~i 66 (364)
T PF05970_consen 3 NEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIID-YL----RSRGKKVLVTAPTGIAAFNI 66 (364)
T ss_pred CHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHH-Hh----ccccceEEEecchHHHHHhc
Confidence 34577776666 6788999999999999986654332 22 11234688888999999766
No 207
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=96.73 E-value=0.013 Score=73.90 Aligned_cols=126 Identities=19% Similarity=0.175 Sum_probs=75.5
Q ss_pred cCCCcHHHHHHHHHHHHc-CCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHHHHHhCCC
Q 002521 247 KSLPSFKEKERLLQAIAR-NQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVSAERGEP 325 (913)
Q Consensus 247 ~~lP~~~~q~~il~~i~~-~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv~~~~~~~ 325 (913)
..+.+...|.+++..+.. ++.++|.|..|+||||.. ..+.+.+ +. .| ..|+.+.||-.+|..+. ...
T Consensus 343 ~g~~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~l-~~~~~~~-e~-~G--~~V~~~ApTGkAA~~L~----e~t--- 410 (988)
T PRK13889 343 RGLVLSGEQADALAHVTDGRDLGVVVGYAGTGKSAML-GVAREAW-EA-AG--YEVRGAALSGIAAENLE----GGS--- 410 (988)
T ss_pred cCCCCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHHH-HHHHHHH-HH-cC--CeEEEecCcHHHHHHHh----hcc---
Confidence 346677888888887776 568899999999999974 3444433 22 12 35777789987775442 211
Q ss_pred cccEeeeEEeccccCCCCceEEEEecHHHHHHHhcC-CCCCCceEEEeccccccCcchHHHHHHHHHhCccCccceEEEe
Q 002521 326 LGETVGYKVRLEGMKGKNTHLLFCTSGILLRRLLSD-HNLNGVTHVFVDEIHERGMNEDFLLIVLKDLLPRRRDLRLILM 404 (913)
Q Consensus 326 ~g~~vGy~v~~e~~~~~~~~Ivv~T~g~Ll~~l~~~-~~L~~~s~IIIDEaHer~~~~d~ll~llk~ll~~~~~~kiIlm 404 (913)
|.. -.|-..|+..+..+ ..+...++|||||+- + +....+..+++.... .+.|+|++
T Consensus 411 -----Gi~--------------a~TI~sll~~~~~~~~~l~~~~vlIVDEAS-M-v~~~~m~~LL~~a~~--~garvVLV 467 (988)
T PRK13889 411 -----GIA--------------SRTIASLEHGWGQGRDLLTSRDVLVIDEAG-M-VGTRQLERVLSHAAD--AGAKVVLV 467 (988)
T ss_pred -----Ccc--------------hhhHHHHHhhhcccccccccCcEEEEECcc-c-CCHHHHHHHHHhhhh--CCCEEEEE
Confidence 110 01333333222222 256678999999998 3 344444455544332 45688887
Q ss_pred ccc
Q 002521 405 SAT 407 (913)
Q Consensus 405 SAT 407 (913)
.=+
T Consensus 468 GD~ 470 (988)
T PRK13889 468 GDP 470 (988)
T ss_pred CCH
Confidence 654
No 208
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.68 E-value=0.021 Score=61.77 Aligned_cols=127 Identities=18% Similarity=0.232 Sum_probs=68.9
Q ss_pred cCCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHHHHHhCCCcccEeeeEEeccccCCCC
Q 002521 264 RNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVSAERGEPLGETVGYKVRLEGMKGKN 343 (913)
Q Consensus 264 ~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv~~~~~~~~g~~vGy~v~~e~~~~~~ 343 (913)
.++.+.+.|++|+||||.+........ ..+....++.+=+.|+.+.+.....+... |+
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~---~~~~~v~~i~~D~~ri~~~~ql~~~~~~~--------~~----------- 131 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFH---GKKKTVGFITTDHSRIGTVQQLQDYVKTI--------GF----------- 131 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHH---HcCCeEEEEecCCCCHHHHHHHHHHhhhc--------Cc-----------
Confidence 457999999999999997776554322 23344455555466644433222222211 11
Q ss_pred ceEEE-EecHHHHHHHhcCCCCCCceEEEeccccccCcchHHHHHHHHHhCccCccceEEEeccccCHHHH
Q 002521 344 THLLF-CTSGILLRRLLSDHNLNGVTHVFVDEIHERGMNEDFLLIVLKDLLPRRRDLRLILMSATLNAELF 413 (913)
Q Consensus 344 ~~Ivv-~T~g~Ll~~l~~~~~L~~~s~IIIDEaHer~~~~d~ll~llk~ll~~~~~~kiIlmSATl~~~~~ 413 (913)
.+.. .++..+.+.+..-....++++||||-+=....+.+.+..+.+.+-...|+..++.+|||...+..
T Consensus 132 -~~~~~~~~~~l~~~l~~l~~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d~ 201 (270)
T PRK06731 132 -EVIAVRDEAAMTRALTYFKEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDM 201 (270)
T ss_pred -eEEecCCHHHHHHHHHHHHhcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHHHH
Confidence 1111 24444544442211234689999999973323344444433322233455567789999865443
No 209
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.65 E-value=0.019 Score=70.13 Aligned_cols=127 Identities=20% Similarity=0.225 Sum_probs=77.8
Q ss_pred cCCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHHHHHhCCCcccEeeeEEeccccCCCC
Q 002521 264 RNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVSAERGEPLGETVGYKVRLEGMKGKN 343 (913)
Q Consensus 264 ~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv~~~~~~~~g~~vGy~v~~e~~~~~~ 343 (913)
.++++.++||||+||||.+...........+ +....++-+-+.|+.+....+.+++..+..+
T Consensus 184 ~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G-~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv----------------- 245 (767)
T PRK14723 184 QGGVLALVGPTGVGKTTTTAKLAARCVAREG-ADQLALLTTDSFRIGALEQLRIYGRILGVPV----------------- 245 (767)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHhhHHHHcC-CCeEEEecCcccchHHHHHHHHHHHhCCCCc-----------------
Confidence 3578999999999999988776654322221 1233344444557766665566655444321
Q ss_pred ceEEEEecHHHHHHHhcCCCCCCceEEEeccccccCcchHHHHHHHHHhC-ccCccceEEEeccccCHHHHH
Q 002521 344 THLLFCTSGILLRRLLSDHNLNGVTHVFVDEIHERGMNEDFLLIVLKDLL-PRRRDLRLILMSATLNAELFS 414 (913)
Q Consensus 344 ~~Ivv~T~g~Ll~~l~~~~~L~~~s~IIIDEaHer~~~~d~ll~llk~ll-~~~~~~kiIlmSATl~~~~~~ 414 (913)
.++.++..+.+.+. .+.++++|+||=+= |+....-+...+..+. ...+.-.++.+|||...+.+.
T Consensus 246 --~~~~~~~~l~~al~---~~~~~D~VLIDTAG-Rs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~ 311 (767)
T PRK14723 246 --HAVKDAADLRFALA---ALGDKHLVLIDTVG-MSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLN 311 (767)
T ss_pred --cccCCHHHHHHHHH---HhcCCCEEEEeCCC-CCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHH
Confidence 11236776666664 45678999999988 4433333444444444 234556788999998766554
No 210
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.64 E-value=0.017 Score=66.18 Aligned_cols=129 Identities=20% Similarity=0.221 Sum_probs=75.9
Q ss_pred HcCCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHHHHHhCCCcccEeeeEEeccccCCC
Q 002521 263 ARNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVSAERGEPLGETVGYKVRLEGMKGK 342 (913)
Q Consensus 263 ~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv~~~~~~~~g~~vGy~v~~e~~~~~ 342 (913)
..+.++.+.||||+||||.+...........+ .....++..-..|.-+.+....+++.+|..+.
T Consensus 189 ~~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~-~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~--------------- 252 (420)
T PRK14721 189 EQGGVYALIGPTGVGKTTTTAKLAARAVIRHG-ADKVALLTTDSYRIGGHEQLRIYGKLLGVSVR--------------- 252 (420)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcC-CCeEEEEecCCcchhHHHHHHHHHHHcCCcee---------------
Confidence 35778999999999999988766554332222 22344555556677777766666665543221
Q ss_pred CceEEEEecHHHHHHHhcCCCCCCceEEEeccccccCcchHHHHHHHHHhCccC-ccceEEEeccccCHHHHHh
Q 002521 343 NTHLLFCTSGILLRRLLSDHNLNGVTHVFVDEIHERGMNEDFLLIVLKDLLPRR-RDLRLILMSATLNAELFSN 415 (913)
Q Consensus 343 ~~~Ivv~T~g~Ll~~l~~~~~L~~~s~IIIDEaHer~~~~d~ll~llk~ll~~~-~~~kiIlmSATl~~~~~~~ 415 (913)
.+-++.-+...+. .+.+.++|+||.+- |......+...++.+.... +.-.++.+|||...+.+.+
T Consensus 253 ----~v~~~~dl~~al~---~l~~~d~VLIDTaG-rsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~ 318 (420)
T PRK14721 253 ----SIKDIADLQLMLH---ELRGKHMVLIDTVG-MSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDE 318 (420)
T ss_pred ----cCCCHHHHHHHHH---HhcCCCEEEecCCC-CCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHH
Confidence 1112322333232 35778999999975 4443344444555554322 3335778999986665444
No 211
>PRK09183 transposase/IS protein; Provisional
Probab=96.50 E-value=0.051 Score=58.74 Aligned_cols=27 Identities=41% Similarity=0.492 Sum_probs=22.5
Q ss_pred HHcCCeEEEEcCCCchHHhHHHHHHHH
Q 002521 262 IARNQVIVISGETGCGKTTQLPQYILE 288 (913)
Q Consensus 262 i~~~~~vII~apTGSGKTt~~~~~ile 288 (913)
+..+.++++.||+|+|||+.+..+...
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~~ 125 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGYE 125 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 567889999999999999887766544
No 212
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.50 E-value=0.0078 Score=74.56 Aligned_cols=131 Identities=15% Similarity=0.175 Sum_probs=78.1
Q ss_pred HHHHHhhhcCCCcEEEEcCChHHHHHHHHHHHcCCCCCCC-CCeEEEEecCCCChHHHHHHhccCCC----CccEEEEec
Q 002521 518 VLCHICRKECPGAVLVFMTGWEDISCLRDQLKSHPLLGDP-NRVLLLTCHGSMPTSEQKFIFEKAPP----NIRKIVLAT 592 (913)
Q Consensus 518 ll~~i~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~~~~-~~~~v~~lHs~l~~~er~~v~~~f~~----g~~kVLVAT 592 (913)
.+..++... +|.+|||.|+....+.+.+.+......... ....+. .-+. ...++..+++.|+. |.-.|++|+
T Consensus 513 ~i~~~~~~~-pgg~lvfFpSy~~l~~v~~~~~~~~~~~~i~~~k~i~-~E~~-~~~~~~~~l~~f~~~~~~~~gavL~av 589 (705)
T TIGR00604 513 LLVEFSKII-PDGIVVFFPSYSYLENIVSTWKEMGILENIEKKKLIF-VETK-DAQETSDALERYKQAVSEGRGAVLLSV 589 (705)
T ss_pred HHHHHhhcC-CCcEEEEccCHHHHHHHHHHHHhcCHHHHHhcCCCEE-EeCC-CcchHHHHHHHHHHHHhcCCceEEEEe
Confidence 344444443 578999999999999999887753211000 011111 1111 11466778888843 455699999
Q ss_pred --chhhhcCCCCC--eEEEEeCCCCcceeecCCC-------------CCCcCCccccCHhhHHHHhcccCCCCCcE
Q 002521 593 --NMAEASITIND--IVFVVDCGKAKETTYDALN-------------NTPCLLPSWISQASARQRRGRAGRVQPGQ 651 (913)
Q Consensus 593 --niae~GIdIp~--v~~VId~g~~k~~~yd~~~-------------~~~~l~~~~iSka~~~QR~GRAGR~~~G~ 651 (913)
..+.+|||+++ ++.||-.|+|.....|+.. +-......+-.--...|-+||+=|.....
T Consensus 590 ~gGk~sEGIDf~~~~~r~ViivGlPf~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~a~~~v~QaiGR~IR~~~D~ 665 (705)
T TIGR00604 590 AGGKVSEGIDFCDDLGRAVIMVGIPYEYTESRILLARLEFLRDQYPIRENQDFYEFDAMRAVNQAIGRVIRHKDDY 665 (705)
T ss_pred cCCcccCccccCCCCCcEEEEEccCCCCCCCHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHhCccccCcCce
Confidence 89999999997 4888889999632222110 00000001112235679999999995533
No 213
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.41 E-value=0.04 Score=64.31 Aligned_cols=127 Identities=21% Similarity=0.249 Sum_probs=72.3
Q ss_pred cCCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHHHHHhCCCcccEeeeEEeccccCCCC
Q 002521 264 RNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVSAERGEPLGETVGYKVRLEGMKGKN 343 (913)
Q Consensus 264 ~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv~~~~~~~~g~~vGy~v~~e~~~~~~ 343 (913)
.++++.+.||||+||||.+..+........+ +....++..-+-|+.+.+..+.+++.+|..+..
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G-~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~--------------- 318 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAARCVMRHG-ASKVALLTTDSYRIGGHEQLRIYGKILGVPVHA--------------- 318 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHHHHHHHhcC-CCeEEEEeCCccchhHHHHHHHHHHHhCCCeec---------------
Confidence 4678999999999999988877654433222 123445555666788877777777765532110
Q ss_pred ceEEEEecHHHHHHHhcCCCCCCceEEEeccccccCcchHHHHHHHHHhCcc-CccceEEEeccccCHHHHH
Q 002521 344 THLLFCTSGILLRRLLSDHNLNGVTHVFVDEIHERGMNEDFLLIVLKDLLPR-RRDLRLILMSATLNAELFS 414 (913)
Q Consensus 344 ~~Ivv~T~g~Ll~~l~~~~~L~~~s~IIIDEaHer~~~~d~ll~llk~ll~~-~~~~kiIlmSATl~~~~~~ 414 (913)
+-+..-+...+ ..+.+.++++||.+= |+.....+...+..+... .+.-.++.++||.....+.
T Consensus 319 ----~~~~~Dl~~aL---~~L~d~d~VLIDTaG-r~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~~~l~ 382 (484)
T PRK06995 319 ----VKDAADLRLAL---SELRNKHIVLIDTIG-MSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHGDTLN 382 (484)
T ss_pred ----cCCchhHHHHH---HhccCCCeEEeCCCC-cChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcHHHHH
Confidence 01111122222 155677899999976 433322222222222211 1333678899998665444
No 214
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.38 E-value=0.0067 Score=57.52 Aligned_cols=24 Identities=42% Similarity=0.538 Sum_probs=19.7
Q ss_pred CCeEEEEcCCCchHHhHHHHHHHH
Q 002521 265 NQVIVISGETGCGKTTQLPQYILE 288 (913)
Q Consensus 265 ~~~vII~apTGSGKTt~~~~~ile 288 (913)
++.+++.||+|||||+.+...+..
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~ 25 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARE 25 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhc
Confidence 568999999999999987766543
No 215
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.28 E-value=0.015 Score=63.76 Aligned_cols=89 Identities=25% Similarity=0.295 Sum_probs=55.1
Q ss_pred cCCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHHHHHhCCCcccEeeeEEeccccCCCC
Q 002521 264 RNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVSAERGEPLGETVGYKVRLEGMKGKN 343 (913)
Q Consensus 264 ~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv~~~~~~~~g~~vGy~v~~e~~~~~~ 343 (913)
.+.+++++||||+||||.+..++....... .+..+.++-+-|.|..+......++...+..+.
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~-g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~---------------- 255 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEH-GNKKVALITTDTYRIGAVEQLKTYAKILGVPVK---------------- 255 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHc-CCCeEEEEECCccchhHHHHHHHHHHHhCCcee----------------
Confidence 356899999999999998887665543221 124566666777777666555555554332210
Q ss_pred ceEEEEecHHHHHHHhcCCCCCCceEEEeccc
Q 002521 344 THLLFCTSGILLRRLLSDHNLNGVTHVFVDEI 375 (913)
Q Consensus 344 ~~Ivv~T~g~Ll~~l~~~~~L~~~s~IIIDEa 375 (913)
...++..+...+. .+.++++||||.+
T Consensus 256 ---~~~~~~~l~~~l~---~~~~~d~vliDt~ 281 (282)
T TIGR03499 256 ---VARDPKELRKALD---RLRDKDLILIDTA 281 (282)
T ss_pred ---ccCCHHHHHHHHH---HccCCCEEEEeCC
Confidence 1124445555543 3456899999975
No 216
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=96.26 E-value=0.11 Score=61.94 Aligned_cols=148 Identities=19% Similarity=0.164 Sum_probs=87.1
Q ss_pred HHHHHHHcCCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHHHHHhCC--------Cccc
Q 002521 257 RLLQAIARNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVSAERGE--------PLGE 328 (913)
Q Consensus 257 ~il~~i~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv~~~~~~--------~~g~ 328 (913)
++++.. +.+-.++.+|=|.|||+++.+++.-.+.. .+ .+|++|.|+...+.++.+++...+.. ..+.
T Consensus 180 ~~~~~f-kq~~tV~taPRqrGKS~iVgi~l~~La~f--~G--i~IlvTAH~~~ts~evF~rv~~~le~lg~~~~fp~~~~ 254 (752)
T PHA03333 180 RIFDEY-GKCYTAATVPRRCGKTTIMAIILAAMISF--LE--IDIVVQAQRKTMCLTLYNRVETVVHAYQHKPWFPEEFK 254 (752)
T ss_pred HHHHHH-hhcceEEEeccCCCcHHHHHHHHHHHHHh--cC--CeEEEECCChhhHHHHHHHHHHHHHHhccccccCCCce
Confidence 344443 44566677899999999888766643321 22 47999999999999998887765531 0111
Q ss_pred EeeeE-----EeccccCC---CCceEEEEecHHHHHHHhcCCCCCCceEEEeccccccCcchHHHHHHHHHhCccCccce
Q 002521 329 TVGYK-----VRLEGMKG---KNTHLLFCTSGILLRRLLSDHNLNGVTHVFVDEIHERGMNEDFLLIVLKDLLPRRRDLR 400 (913)
Q Consensus 329 ~vGy~-----v~~e~~~~---~~~~Ivv~T~g~Ll~~l~~~~~L~~~s~IIIDEaHer~~~~d~ll~llk~ll~~~~~~k 400 (913)
.+... +.+..... ..+.|.|++.+ .+...-.++++||||||+.- ..+.+..++-.+.. .+-+
T Consensus 255 iv~vkgg~E~I~f~~p~gak~G~sti~F~Ars------~~s~RG~~~DLLIVDEAAfI--~~~~l~aIlP~l~~--~~~k 324 (752)
T PHA03333 255 IVTLKGTDENLEYISDPAAKEGKTTAHFLASS------PNAARGQNPDLVIVDEAAFV--NPGALLSVLPLMAV--KGTK 324 (752)
T ss_pred EEEeeCCeeEEEEecCcccccCcceeEEeccc------CCCcCCCCCCEEEEECcccC--CHHHHHHHHHHHcc--CCCc
Confidence 11100 11111001 11456665443 11112235799999999943 33555555444443 2458
Q ss_pred EEEeccccCHHHHHhhhCC
Q 002521 401 LILMSATLNAELFSNYFGG 419 (913)
Q Consensus 401 iIlmSATl~~~~~~~yf~~ 419 (913)
+|++|.+-+++.+-.++.+
T Consensus 325 ~IiISS~~~~~s~tS~L~n 343 (752)
T PHA03333 325 QIHISSPVDADSWISRVGE 343 (752)
T ss_pred eEEEeCCCCcchHHHHhhh
Confidence 8999999888777776654
No 217
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=96.22 E-value=0.011 Score=72.10 Aligned_cols=66 Identities=23% Similarity=0.364 Sum_probs=51.0
Q ss_pred CcHHHHHHHHHHHHcC-CeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHHHH
Q 002521 250 PSFKEKERLLQAIARN-QVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVSA 320 (913)
Q Consensus 250 P~~~~q~~il~~i~~~-~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv~~ 320 (913)
.+...|.+++..+..+ ..++|.||+|+|||+.+...+...+ . .|. +|+|+.|+..++.++.+++..
T Consensus 157 ~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~~-~--~g~--~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 157 NLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQLV-K--RGL--RVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHHH-H--cCC--CEEEEcCcHHHHHHHHHHHHh
Confidence 3456666666666655 7899999999999988877666544 2 222 788889999999999999976
No 218
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=96.15 E-value=0.023 Score=61.61 Aligned_cols=22 Identities=41% Similarity=0.715 Sum_probs=18.1
Q ss_pred CCeEEEEcCCCchHHhHHHHHH
Q 002521 265 NQVIVISGETGCGKTTQLPQYI 286 (913)
Q Consensus 265 ~~~vII~apTGSGKTt~~~~~i 286 (913)
...++|.||+|+||||.+-.+.
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~ 64 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLL 64 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHH
Confidence 3478999999999998877654
No 219
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.15 E-value=0.037 Score=61.77 Aligned_cols=27 Identities=26% Similarity=0.322 Sum_probs=19.9
Q ss_pred cCCeEEEEcCCCchHHhHHHHHHHHHHH
Q 002521 264 RNQVIVISGETGCGKTTQLPQYILESEI 291 (913)
Q Consensus 264 ~~~~vII~apTGSGKTt~~~~~ile~~~ 291 (913)
.+..+++.|+||+|||+.+... ...++
T Consensus 182 ~~~~Lll~G~~GtGKThLa~aI-a~~l~ 208 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLSNCI-AKELL 208 (329)
T ss_pred cCCcEEEECCCCCcHHHHHHHH-HHHHH
Confidence 4578999999999999866543 33343
No 220
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=96.12 E-value=0.0011 Score=66.73 Aligned_cols=117 Identities=21% Similarity=0.260 Sum_probs=55.8
Q ss_pred EEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHHHHHhCCCcccEeeeEEec-------cccCC
Q 002521 269 VISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVSAERGEPLGETVGYKVRL-------EGMKG 341 (913)
Q Consensus 269 II~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv~~~~~~~~g~~vGy~v~~-------e~~~~ 341 (913)
||+|+-|-|||+++-+.+.... .. ...+|+||.|+...+..+.+.+...+. ..||.... .....
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~---~~-~~~~I~vtAP~~~~~~~lf~~~~~~l~-----~~~~~~~~~~~~~~~~~~~~ 71 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALI---QK-GKIRILVTAPSPENVQTLFEFAEKGLK-----ALGYKEEKKKRIGQIIKLRF 71 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSS---S------EEEE-SS--S-HHHHHCC------------------------------
T ss_pred CccCCCCCCHHHHHHHHHHHHH---Hh-cCceEEEecCCHHHHHHHHHHHHhhcc-----cccccccccccccccccccc
Confidence 5789999999998887765422 11 126899999999999888776654222 22322210 01112
Q ss_pred CCceEEEEecHHHHHHHhcCCCCCCceEEEeccccccCcchHHHHHHHHHhCccCccceEEEeccccC
Q 002521 342 KNTHLLFCTSGILLRRLLSDHNLNGVTHVFVDEIHERGMNEDFLLIVLKDLLPRRRDLRLILMSATLN 409 (913)
Q Consensus 342 ~~~~Ivv~T~g~Ll~~l~~~~~L~~~s~IIIDEaHer~~~~d~ll~llk~ll~~~~~~kiIlmSATl~ 409 (913)
....|-|..|..+... -...+++|||||= .+... +|+.++... ..++||.|+.
T Consensus 72 ~~~~i~f~~Pd~l~~~------~~~~DlliVDEAA--aIp~p----~L~~ll~~~---~~vv~stTi~ 124 (177)
T PF05127_consen 72 NKQRIEFVAPDELLAE------KPQADLLIVDEAA--AIPLP----LLKQLLRRF---PRVVFSTTIH 124 (177)
T ss_dssp -CCC--B--HHHHCCT----------SCEEECTGG--GS-HH----HHHHHHCCS---SEEEEEEEBS
T ss_pred ccceEEEECCHHHHhC------cCCCCEEEEechh--cCCHH----HHHHHHhhC---CEEEEEeecc
Confidence 3467888888766532 1245899999997 33333 344445444 3577888874
No 221
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.06 E-value=0.29 Score=52.35 Aligned_cols=115 Identities=19% Similarity=0.277 Sum_probs=61.0
Q ss_pred CeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHHHHHhCCCcccEeeeEEeccccCCCCce
Q 002521 266 QVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVSAERGEPLGETVGYKVRLEGMKGKNTH 345 (913)
Q Consensus 266 ~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv~~~~~~~~g~~vGy~v~~e~~~~~~~~ 345 (913)
..+++.|++|+|||+.+...+.+ +.. .+. .++++ +...+. ..+...+. . . .
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~-l~~--~g~--~v~~i-t~~~l~----~~l~~~~~----------------~-~--~ 150 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNE-LLL--RGK--SVLII-TVADIM----SAMKDTFS----------------N-S--E 150 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHH-HHh--cCC--eEEEE-EHHHHH----HHHHHHHh----------------h-c--c
Confidence 47899999999999877654443 322 232 33442 222232 23322110 0 0 0
Q ss_pred EEEEecHHHHHHHhcCCCCCCceEEEeccccccCcchHHHHHHHHHhCccCc-cceEEEeccccCHHHHHhhhCC
Q 002521 346 LLFCTSGILLRRLLSDHNLNGVTHVFVDEIHERGMNEDFLLIVLKDLLPRRR-DLRLILMSATLNAELFSNYFGG 419 (913)
Q Consensus 346 Ivv~T~g~Ll~~l~~~~~L~~~s~IIIDEaHer~~~~d~ll~llk~ll~~~~-~~kiIlmSATl~~~~~~~yf~~ 419 (913)
.+...+++. +.++++|||||++... .+++-..++-.++..|- +.+-+++|.-++.+.+.+++++
T Consensus 151 ---~~~~~~l~~------l~~~dlLvIDDig~~~-~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl~~~~l~~~~g~ 215 (244)
T PRK07952 151 ---TSEEQLLND------LSNVDLLVIDEIGVQT-ESRYEKVIINQIVDRRSSSKRPTGMLTNSNMEEMTKLLGE 215 (244)
T ss_pred ---ccHHHHHHH------hccCCEEEEeCCCCCC-CCHHHHHHHHHHHHHHHhCCCCEEEeCCCCHHHHHHHhCh
Confidence 123334443 4578999999999543 34444334434443321 2244555666677777777653
No 222
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.03 E-value=0.037 Score=60.81 Aligned_cols=59 Identities=25% Similarity=0.354 Sum_probs=46.8
Q ss_pred CCCcHHHHHHHHHHHHcCC--eEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhH
Q 002521 248 SLPSFKEKERLLQAIARNQ--VIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRR 308 (913)
Q Consensus 248 ~lP~~~~q~~il~~i~~~~--~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr 308 (913)
-.|...+|.-.+++++... .|.+.|..|||||..++.+-++..+..+ ...+|+|+-|+.
T Consensus 226 i~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~--~y~KiiVtRp~v 286 (436)
T COG1875 226 IRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERK--RYRKIIVTRPTV 286 (436)
T ss_pred cCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHh--hhceEEEecCCc
Confidence 3477888999999998765 5778999999999888888888776644 345899977763
No 223
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.01 E-value=0.034 Score=64.35 Aligned_cols=124 Identities=21% Similarity=0.299 Sum_probs=68.5
Q ss_pred CCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHHHHHhCCCcccEeeeEEeccccCCCCc
Q 002521 265 NQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVSAERGEPLGETVGYKVRLEGMKGKNT 344 (913)
Q Consensus 265 ~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv~~~~~~~~g~~vGy~v~~e~~~~~~~ 344 (913)
..+++++|++|+||||.+..+... +. ..+..+.++.+=+.|..|......++...+.++. + .... .
T Consensus 95 p~vI~lvG~~GsGKTTtaakLA~~-L~--~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~---~-----~~~~-~-- 160 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAAKLARY-FK--KKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFY---G-----DPDN-K-- 160 (437)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHH-HH--HcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEE---e-----cCCc-c--
Confidence 457889999999999988766643 22 2345566666666677666655666554443210 0 0000 0
Q ss_pred eEEEEecHHHHHHHhcCCCCCCceEEEeccccccCcchHHHHHHHHHhC-ccCccceEEEeccccCH
Q 002521 345 HLLFCTSGILLRRLLSDHNLNGVTHVFVDEIHERGMNEDFLLIVLKDLL-PRRRDLRLILMSATLNA 410 (913)
Q Consensus 345 ~Ivv~T~g~Ll~~l~~~~~L~~~s~IIIDEaHer~~~~d~ll~llk~ll-~~~~~~kiIlmSATl~~ 410 (913)
+ ....+.+.+.. +...++||||.+-....+.+.+.. ++.+. ...++.-++.++||...
T Consensus 161 d----~~~i~~~al~~---~~~~DvVIIDTAGr~~~d~~lm~E-l~~l~~~~~pdevlLVvda~~gq 219 (437)
T PRK00771 161 D----AVEIAKEGLEK---FKKADVIIVDTAGRHALEEDLIEE-MKEIKEAVKPDEVLLVIDATIGQ 219 (437)
T ss_pred C----HHHHHHHHHHH---hhcCCEEEEECCCcccchHHHHHH-HHHHHHHhcccceeEEEeccccH
Confidence 0 11223333321 233589999999743444444322 22222 22456678888988743
No 224
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.94 E-value=0.072 Score=59.29 Aligned_cols=128 Identities=18% Similarity=0.239 Sum_probs=67.9
Q ss_pred cCCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHHHHHhCCCcccEeeeEEeccccCCCC
Q 002521 264 RNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVSAERGEPLGETVGYKVRLEGMKGKN 343 (913)
Q Consensus 264 ~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv~~~~~~~~g~~vGy~v~~e~~~~~~ 343 (913)
.+.++.++||+|+||||.+........ ..+....++-.=+.|..|.+.....+...+. ++... .. ..+
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~---~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i------~~~~~--~~-~~d 180 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYK---AQGKKVLLAAGDTFRAAAIEQLQVWGERVGV------PVIAQ--KE-GAD 180 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH---hcCCeEEEEecCccchhhHHHHHHHHHHcCc------eEEEe--CC-CCC
Confidence 457889999999999988776554322 2344444444445576665555555554432 11111 00 011
Q ss_pred ceEEEEecHHHHHHHhcCCCCCCceEEEeccccccCcchHHHHHHHHH-------hCccCccceEEEeccccCHH
Q 002521 344 THLLFCTSGILLRRLLSDHNLNGVTHVFVDEIHERGMNEDFLLIVLKD-------LLPRRRDLRLILMSATLNAE 411 (913)
Q Consensus 344 ~~Ivv~T~g~Ll~~l~~~~~L~~~s~IIIDEaHer~~~~d~ll~llk~-------ll~~~~~~kiIlmSATl~~~ 411 (913)
+ .....+.+.. ....++++||||=+-.. ...+.++.-++. ..+..|+-.++.++||...+
T Consensus 181 p------a~~v~~~l~~-~~~~~~D~ViIDTaGr~-~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~ 247 (318)
T PRK10416 181 P------ASVAFDAIQA-AKARGIDVLIIDTAGRL-HNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQN 247 (318)
T ss_pred H------HHHHHHHHHH-HHhCCCCEEEEeCCCCC-cCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChH
Confidence 1 0111121110 12367999999999833 333332222222 22345666789999997544
No 225
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=95.89 E-value=0.058 Score=56.77 Aligned_cols=25 Identities=24% Similarity=0.413 Sum_probs=20.1
Q ss_pred cCCeEEEEcCCCchHHhHHHHHHHH
Q 002521 264 RNQVIVISGETGCGKTTQLPQYILE 288 (913)
Q Consensus 264 ~~~~vII~apTGSGKTt~~~~~ile 288 (913)
.+..+++.||+|+|||+.+-.+..+
T Consensus 37 ~~~~lll~G~~G~GKT~la~~~~~~ 61 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQAACAA 61 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999888665544
No 226
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.88 E-value=0.021 Score=66.18 Aligned_cols=31 Identities=26% Similarity=0.315 Sum_probs=22.4
Q ss_pred HHHHHHcCC---eEEEEcCCCchHHhHHHHHHHH
Q 002521 258 LLQAIARNQ---VIVISGETGCGKTTQLPQYILE 288 (913)
Q Consensus 258 il~~i~~~~---~vII~apTGSGKTt~~~~~ile 288 (913)
+..++..++ .++++||.|+||||.+-.++..
T Consensus 30 L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~ 63 (484)
T PRK14956 30 LQNALKSGKIGHAYIFFGPRGVGKTTIARILAKR 63 (484)
T ss_pred HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 344455554 3699999999999988766543
No 227
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.86 E-value=0.058 Score=62.00 Aligned_cols=124 Identities=16% Similarity=0.186 Sum_probs=68.7
Q ss_pred CeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHHHHHhCCCcccEeeeEEeccccCCCCce
Q 002521 266 QVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVSAERGEPLGETVGYKVRLEGMKGKNTH 345 (913)
Q Consensus 266 ~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv~~~~~~~~g~~vGy~v~~e~~~~~~~~ 345 (913)
.++.++|++|+||||.+....... . .+|..+.++.+=|.|..|..+.+..+...+.++. ....+ .
T Consensus 101 ~vi~lvG~~GvGKTTtaaKLA~~l--~-~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~-----~~~~~----~--- 165 (429)
T TIGR01425 101 NVIMFVGLQGSGKTTTCTKLAYYY--Q-RKGFKPCLVCADTFRAGAFDQLKQNATKARIPFY-----GSYTE----S--- 165 (429)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH--H-HCCCCEEEEcCcccchhHHHHHHHHhhccCCeEE-----eecCC----C---
Confidence 578899999999998887665432 1 3455566666667787777665555543332211 00000 0
Q ss_pred EEEEec-HHHHHHHhcCCCCCCceEEEeccccccCcchHHHHHHHHHhCccCccceEEEeccccC
Q 002521 346 LLFCTS-GILLRRLLSDHNLNGVTHVFVDEIHERGMNEDFLLIVLKDLLPRRRDLRLILMSATLN 409 (913)
Q Consensus 346 Ivv~T~-g~Ll~~l~~~~~L~~~s~IIIDEaHer~~~~d~ll~llk~ll~~~~~~kiIlmSATl~ 409 (913)
.| .+..+.+..- .-.++++||||=+-....+.+.+..+.+..-...|+..++.++||..
T Consensus 166 ----dp~~i~~~~l~~~-~~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~G 225 (429)
T TIGR01425 166 ----DPVKIASEGVEKF-KKENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIG 225 (429)
T ss_pred ----CHHHHHHHHHHHH-HhCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccC
Confidence 11 1111111100 11468999999998433444444333322222346667888999873
No 228
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=95.85 E-value=0.041 Score=66.60 Aligned_cols=31 Identities=26% Similarity=0.397 Sum_probs=22.1
Q ss_pred HHHHHHcCC---eEEEEcCCCchHHhHHHHHHHH
Q 002521 258 LLQAIARNQ---VIVISGETGCGKTTQLPQYILE 288 (913)
Q Consensus 258 il~~i~~~~---~vII~apTGSGKTt~~~~~ile 288 (913)
+...+..++ .+|++|+.|+||||.+-.+...
T Consensus 28 L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKa 61 (830)
T PRK07003 28 LTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKA 61 (830)
T ss_pred HHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 334444543 5689999999999988766544
No 229
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.83 E-value=0.049 Score=59.29 Aligned_cols=127 Identities=18% Similarity=0.257 Sum_probs=68.9
Q ss_pred CCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHHHHHhCCCcccEeeeEEeccccCCCCc
Q 002521 265 NQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVSAERGEPLGETVGYKVRLEGMKGKNT 344 (913)
Q Consensus 265 ~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv~~~~~~~~g~~vGy~v~~e~~~~~~~ 344 (913)
.++++++|++|+||||.+........ ..+....++.+=+.|..+.+....++..++..+ + ... . ..+
T Consensus 72 ~~vi~l~G~~G~GKTTt~akLA~~l~---~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~---~--~~~--~--~~d- 138 (272)
T TIGR00064 72 PNVILFVGVNGVGKTTTIAKLANKLK---KQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDV---I--KQK--E--GAD- 138 (272)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHH---hcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEE---E--eCC--C--CCC-
Confidence 46788899999999998877664432 334445555555667776665555655444211 0 000 0 010
Q ss_pred eEEEEec-HHHHHHHhcCCCCCCceEEEeccccccCcchHHHHHHHHHhC-------ccCccceEEEeccccCHHH
Q 002521 345 HLLFCTS-GILLRRLLSDHNLNGVTHVFVDEIHERGMNEDFLLIVLKDLL-------PRRRDLRLILMSATLNAEL 412 (913)
Q Consensus 345 ~Ivv~T~-g~Ll~~l~~~~~L~~~s~IIIDEaHer~~~~d~ll~llk~ll-------~~~~~~kiIlmSATl~~~~ 412 (913)
| ....+.+.. ....++++||||=+-....+...+ .-++.+. ...++-.++.++||...+.
T Consensus 139 ------p~~~~~~~l~~-~~~~~~D~ViIDT~G~~~~d~~~~-~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~ 206 (272)
T TIGR00064 139 ------PAAVAFDAIQK-AKARNIDVVLIDTAGRLQNKVNLM-DELKKIKRVIKKVDKDAPDEVLLVLDATTGQNA 206 (272)
T ss_pred ------HHHHHHHHHHH-HHHCCCCEEEEeCCCCCcchHHHH-HHHHHHHHHHhcccCCCCceEEEEEECCCCHHH
Confidence 1 122222211 123679999999887333333322 2222221 2335667899999975543
No 230
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=95.80 E-value=0.022 Score=57.93 Aligned_cols=29 Identities=24% Similarity=0.323 Sum_probs=20.5
Q ss_pred HHcCCeEEEEcCCCchHHhHHHHHHHHHH
Q 002521 262 IARNQVIVISGETGCGKTTQLPQYILESE 290 (913)
Q Consensus 262 i~~~~~vII~apTGSGKTt~~~~~ile~~ 290 (913)
+.+++++++.|+||+|||..+...+.+.+
T Consensus 44 ~~~~~~l~l~G~~G~GKThLa~ai~~~~~ 72 (178)
T PF01695_consen 44 IENGENLILYGPPGTGKTHLAVAIANEAI 72 (178)
T ss_dssp -SC--EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred cccCeEEEEEhhHhHHHHHHHHHHHHHhc
Confidence 45678999999999999987766554433
No 231
>PF13173 AAA_14: AAA domain
Probab=95.77 E-value=0.06 Score=51.44 Aligned_cols=26 Identities=35% Similarity=0.592 Sum_probs=21.9
Q ss_pred cCCeEEEEcCCCchHHhHHHHHHHHH
Q 002521 264 RNQVIVISGETGCGKTTQLPQYILES 289 (913)
Q Consensus 264 ~~~~vII~apTGSGKTt~~~~~ile~ 289 (913)
+++.++|.||.|+||||.+-+++-+.
T Consensus 1 n~~~~~l~G~R~vGKTtll~~~~~~~ 26 (128)
T PF13173_consen 1 NRKIIILTGPRGVGKTTLLKQLAKDL 26 (128)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 36789999999999999988877553
No 232
>PRK11054 helD DNA helicase IV; Provisional
Probab=95.76 E-value=0.061 Score=65.98 Aligned_cols=119 Identities=16% Similarity=0.111 Sum_probs=77.0
Q ss_pred CchhhhHHhhhcCCCcHHHHHHHHHHHHcCCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHH
Q 002521 236 SPEGNKMLDFRKSLPSFKEKERLLQAIARNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVS 315 (913)
Q Consensus 236 ~~~~~~l~~~r~~lP~~~~q~~il~~i~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva 315 (913)
...|+.++..-...|+...|.+++.. ....++|.|..|||||+.+.--+...+ ..+....-.|+++..++.+|..+.
T Consensus 182 l~~~~~~f~~~e~~~L~~~Q~~av~~--~~~~~lV~agaGSGKT~vl~~r~ayLl-~~~~~~~~~IL~ltft~~AA~em~ 258 (684)
T PRK11054 182 LEEYADFFSQVESSPLNPSQARAVVN--GEDSLLVLAGAGSGKTSVLVARAGWLL-ARGQAQPEQILLLAFGRQAAEEMD 258 (684)
T ss_pred HHHHHHHHHhccCCCCCHHHHHHHhC--CCCCeEEEEeCCCCHHHHHHHHHHHHH-HhCCCCHHHeEEEeccHHHHHHHH
Confidence 34566666666668899888877754 445678899999999987765544333 223233457888889999999999
Q ss_pred HHHHHHhCCCcccEeeeEEeccccCCCCceEEEEecHHHHHHH-hcC-CCCCCceEEEecccc
Q 002521 316 ERVSAERGEPLGETVGYKVRLEGMKGKNTHLLFCTSGILLRRL-LSD-HNLNGVTHVFVDEIH 376 (913)
Q Consensus 316 ~rv~~~~~~~~g~~vGy~v~~e~~~~~~~~Ivv~T~g~Ll~~l-~~~-~~L~~~s~IIIDEaH 376 (913)
+|+....| ...|.+.|--.|...+ ... .....++.+..|+-.
T Consensus 259 eRL~~~lg-------------------~~~v~v~TFHSlal~Il~~~~~~~p~~s~~~~d~~~ 302 (684)
T PRK11054 259 ERIRERLG-------------------TEDITARTFHALALHIIQQGSKKVPVISKLENDSKA 302 (684)
T ss_pred HHHHHhcC-------------------CCCcEEEeHHHHHHHHHHHhhhcCCCcCccccchHH
Confidence 99987543 0257788876555433 221 122334445556543
No 233
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=95.72 E-value=0.094 Score=66.78 Aligned_cols=125 Identities=18% Similarity=0.214 Sum_probs=75.7
Q ss_pred CCCcHHHHHHHHHHHH-cCCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHHHHHhCCCc
Q 002521 248 SLPSFKEKERLLQAIA-RNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVSAERGEPL 326 (913)
Q Consensus 248 ~lP~~~~q~~il~~i~-~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv~~~~~~~~ 326 (913)
.+.+..-|.+.+..+. .++.++|.|+.|+||||.+-.. .+.+ +. .| ..|+.+.||--.|..+ .+..|..
T Consensus 379 ~~~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l~~~-~~~~-e~-~G--~~V~g~ApTgkAA~~L----~e~~Gi~- 448 (1102)
T PRK13826 379 HARLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTMMKAA-REAW-EA-AG--YRVVGGALAGKAAEGL----EKEAGIQ- 448 (1102)
T ss_pred CCCCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHHHHHH-HHHH-HH-cC--CeEEEEcCcHHHHHHH----HHhhCCC-
Confidence 4667888888888774 5789999999999999877643 3322 22 22 3677778997777544 3322221
Q ss_pred ccEeeeEEeccccCCCCceEEEEecHHHHHHH-hcCCCCCCceEEEeccccccCcchHHHHHHHHHhCccCccceEEEec
Q 002521 327 GETVGYKVRLEGMKGKNTHLLFCTSGILLRRL-LSDHNLNGVTHVFVDEIHERGMNEDFLLIVLKDLLPRRRDLRLILMS 405 (913)
Q Consensus 327 g~~vGy~v~~e~~~~~~~~Ivv~T~g~Ll~~l-~~~~~L~~~s~IIIDEaHer~~~~d~ll~llk~ll~~~~~~kiIlmS 405 (913)
-.|-..++..+ .....+..-++|||||+. + +.+..+..+++.+.. .+.|+|++.
T Consensus 449 ---------------------a~TIas~ll~~~~~~~~l~~~~vlVIDEAs-M-v~~~~m~~Ll~~~~~--~garvVLVG 503 (1102)
T PRK13826 449 ---------------------SRTLSSWELRWNQGRDQLDNKTVFVLDEAG-M-VASRQMALFVEAVTR--AGAKLVLVG 503 (1102)
T ss_pred ---------------------eeeHHHHHhhhccCccCCCCCcEEEEECcc-c-CCHHHHHHHHHHHHh--cCCEEEEEC
Confidence 11222222111 112356677899999999 3 444445555544432 356788876
Q ss_pred cc
Q 002521 406 AT 407 (913)
Q Consensus 406 AT 407 (913)
=+
T Consensus 504 D~ 505 (1102)
T PRK13826 504 DP 505 (1102)
T ss_pred CH
Confidence 54
No 234
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=95.72 E-value=0.035 Score=67.01 Aligned_cols=32 Identities=28% Similarity=0.335 Sum_probs=24.0
Q ss_pred HHHHHHHcCCe---EEEEcCCCchHHhHHHHHHHH
Q 002521 257 RLLQAIARNQV---IVISGETGCGKTTQLPQYILE 288 (913)
Q Consensus 257 ~il~~i~~~~~---vII~apTGSGKTt~~~~~ile 288 (913)
.+..++..++. ++++||.|+||||.+-.+...
T Consensus 27 ~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~ 61 (647)
T PRK07994 27 ALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKG 61 (647)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 44555666654 799999999999988776543
No 235
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.70 E-value=0.033 Score=68.70 Aligned_cols=31 Identities=23% Similarity=0.425 Sum_probs=21.7
Q ss_pred HHHHHHcCC---eEEEEcCCCchHHhHHHHHHHH
Q 002521 258 LLQAIARNQ---VIVISGETGCGKTTQLPQYILE 288 (913)
Q Consensus 258 il~~i~~~~---~vII~apTGSGKTt~~~~~ile 288 (913)
+..++..++ .+|++||.|+||||.+-.+...
T Consensus 28 LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~ 61 (944)
T PRK14949 28 LTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKG 61 (944)
T ss_pred HHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 334444443 4589999999999988766543
No 236
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=95.66 E-value=0.27 Score=53.02 Aligned_cols=117 Identities=21% Similarity=0.284 Sum_probs=65.5
Q ss_pred HHHHHcCCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHHHHHhCCCcccEeeeEEeccc
Q 002521 259 LQAIARNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVSAERGEPLGETVGYKVRLEG 338 (913)
Q Consensus 259 l~~i~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv~~~~~~~~g~~vGy~v~~e~ 338 (913)
.+.+.++.++++.|++|+|||..+.....+.+ . .|.. .+++ +..+++.++...+.. |
T Consensus 99 ~~~~~~~~nl~l~G~~G~GKThLa~Ai~~~l~-~--~g~s-v~f~--~~~el~~~Lk~~~~~----------~------- 155 (254)
T COG1484 99 VEFFERGENLVLLGPPGVGKTHLAIAIGNELL-K--AGIS-VLFI--TAPDLLSKLKAAFDE----------G------- 155 (254)
T ss_pred HHHhccCCcEEEECCCCCcHHHHHHHHHHHHH-H--cCCe-EEEE--EHHHHHHHHHHHHhc----------C-------
Confidence 33455788999999999999987765555543 2 2322 2333 666666665444321 0
Q ss_pred cCCCCceEEEEecHHHHHHHhcCCCCCCceEEEeccccccCc---chHHHHHHHHHhCccCccceEEEeccccCHHHHHh
Q 002521 339 MKGKNTHLLFCTSGILLRRLLSDHNLNGVTHVFVDEIHERGM---NEDFLLIVLKDLLPRRRDLRLILMSATLNAELFSN 415 (913)
Q Consensus 339 ~~~~~~~Ivv~T~g~Ll~~l~~~~~L~~~s~IIIDEaHer~~---~~d~ll~llk~ll~~~~~~kiIlmSATl~~~~~~~ 415 (913)
...+.|.+. +.+++++||||+=-... ..+.+..++......+ .. ++|.-.+.+.+..
T Consensus 156 ----------~~~~~l~~~------l~~~dlLIiDDlG~~~~~~~~~~~~~q~I~~r~~~~---~~-~~tsN~~~~~~~~ 215 (254)
T COG1484 156 ----------RLEEKLLRE------LKKVDLLIIDDIGYEPFSQEEADLLFQLISRRYESR---SL-IITSNLSFGEWDE 215 (254)
T ss_pred ----------chHHHHHHH------hhcCCEEEEecccCccCCHHHHHHHHHHHHHHHhhc---cc-eeecCCChHHHHh
Confidence 012334443 46899999999984222 2233333433333322 23 5555556565655
Q ss_pred hhC
Q 002521 416 YFG 418 (913)
Q Consensus 416 yf~ 418 (913)
.|+
T Consensus 216 ~~~ 218 (254)
T COG1484 216 LFG 218 (254)
T ss_pred hcc
Confidence 554
No 237
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=95.63 E-value=0.067 Score=66.71 Aligned_cols=31 Identities=29% Similarity=0.472 Sum_probs=22.5
Q ss_pred HHHHHHcC---CeEEEEcCCCchHHhHHHHHHHH
Q 002521 258 LLQAIARN---QVIVISGETGCGKTTQLPQYILE 288 (913)
Q Consensus 258 il~~i~~~---~~vII~apTGSGKTt~~~~~ile 288 (913)
+..++..+ ..+|++||.|+|||+.+..+...
T Consensus 27 L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~ 60 (824)
T PRK07764 27 LSTALDSGRINHAYLFSGPRGCGKTSSARILARS 60 (824)
T ss_pred HHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 44445554 34789999999999988766544
No 238
>PRK10867 signal recognition particle protein; Provisional
Probab=95.62 E-value=0.066 Score=61.85 Aligned_cols=124 Identities=20% Similarity=0.219 Sum_probs=69.5
Q ss_pred CeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHHHHHhCCCcccEeeeEEeccccCCCCce
Q 002521 266 QVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVSAERGEPLGETVGYKVRLEGMKGKNTH 345 (913)
Q Consensus 266 ~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv~~~~~~~~g~~vGy~v~~e~~~~~~~~ 345 (913)
.+++++|++|+||||.+..++.... . ..|..+.++.+=+.|..|....+.++...+..+.. . . .
T Consensus 101 ~vI~~vG~~GsGKTTtaakLA~~l~-~-~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~-----~---~-~----- 164 (433)
T PRK10867 101 TVIMMVGLQGAGKTTTAGKLAKYLK-K-KKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFP-----S---G-D----- 164 (433)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHH-H-hcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEe-----c---C-C-----
Confidence 4788999999999998877665432 1 22556677777788888875555555544322110 0 0 0
Q ss_pred EEEEecHHHHHHHhcCCCCCCceEEEeccccccCcchHHHHHHHHHhCc-cCccceEEEecccc
Q 002521 346 LLFCTSGILLRRLLSDHNLNGVTHVFVDEIHERGMNEDFLLIVLKDLLP-RRRDLRLILMSATL 408 (913)
Q Consensus 346 Ivv~T~g~Ll~~l~~~~~L~~~s~IIIDEaHer~~~~d~ll~llk~ll~-~~~~~kiIlmSATl 408 (913)
-..|..+...........++++||||=+=....+.+.... +..+.. ..|+--++.++||.
T Consensus 165 --~~dp~~i~~~a~~~a~~~~~DvVIIDTaGrl~~d~~lm~e-L~~i~~~v~p~evllVlda~~ 225 (433)
T PRK10867 165 --GQDPVDIAKAALEEAKENGYDVVIVDTAGRLHIDEELMDE-LKAIKAAVNPDEILLVVDAMT 225 (433)
T ss_pred --CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcccCHHHHHH-HHHHHHhhCCCeEEEEEeccc
Confidence 0123333322211112356899999988743333333322 222222 23444577788886
No 239
>PRK08727 hypothetical protein; Validated
Probab=95.54 E-value=0.059 Score=57.35 Aligned_cols=22 Identities=27% Similarity=0.338 Sum_probs=17.0
Q ss_pred CeEEEEcCCCchHHhHHHHHHH
Q 002521 266 QVIVISGETGCGKTTQLPQYIL 287 (913)
Q Consensus 266 ~~vII~apTGSGKTt~~~~~il 287 (913)
+.+++.|++|+|||..+-.+..
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~ 63 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCA 63 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4589999999999976654433
No 240
>PRK08116 hypothetical protein; Validated
Probab=95.54 E-value=0.075 Score=57.74 Aligned_cols=27 Identities=33% Similarity=0.374 Sum_probs=19.3
Q ss_pred CCeEEEEcCCCchHHhHHHHHHHHHHHH
Q 002521 265 NQVIVISGETGCGKTTQLPQYILESEIE 292 (913)
Q Consensus 265 ~~~vII~apTGSGKTt~~~~~ile~~~~ 292 (913)
+..+++.|++|+|||..+.. +...+..
T Consensus 114 ~~gl~l~G~~GtGKThLa~a-ia~~l~~ 140 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAAC-IANELIE 140 (268)
T ss_pred CceEEEECCCCCCHHHHHHH-HHHHHHH
Confidence 34589999999999977664 4444433
No 241
>PRK06893 DNA replication initiation factor; Validated
Probab=95.46 E-value=0.049 Score=57.75 Aligned_cols=24 Identities=21% Similarity=0.206 Sum_probs=18.4
Q ss_pred CCeEEEEcCCCchHHhHHHHHHHH
Q 002521 265 NQVIVISGETGCGKTTQLPQYILE 288 (913)
Q Consensus 265 ~~~vII~apTGSGKTt~~~~~ile 288 (913)
+..+++.||+|+|||..+-...-+
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~ 62 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNH 62 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 456899999999999866555444
No 242
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=95.46 E-value=0.11 Score=60.90 Aligned_cols=36 Identities=22% Similarity=0.281 Sum_probs=22.7
Q ss_pred CeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEc
Q 002521 266 QVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICT 304 (913)
Q Consensus 266 ~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~ 304 (913)
+.+++.||+|+|||..+-.+ ...+... .+...++++
T Consensus 149 ~~l~l~G~~G~GKThL~~ai-~~~~~~~--~~~~~v~yi 184 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAI-GNYILEK--NPNAKVVYV 184 (450)
T ss_pred CeEEEECCCCCCHHHHHHHH-HHHHHHh--CCCCeEEEE
Confidence 45899999999999766443 3333332 223456664
No 243
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=95.43 E-value=0.026 Score=65.75 Aligned_cols=65 Identities=14% Similarity=0.276 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHcCCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHHHH
Q 002521 252 FKEKERLLQAIARNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVSA 320 (913)
Q Consensus 252 ~~~q~~il~~i~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv~~ 320 (913)
...|..++++++.+...+|.||+|+|||....-.++... +.. ...|+|.+|..+++.|+|+.+.+
T Consensus 412 N~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~IVyhl~-~~~---~~~VLvcApSNiAVDqLaeKIh~ 476 (935)
T KOG1802|consen 412 NASQSNAVKHVLQRPLSLIQGPPGTGKTVTSATIVYHLA-RQH---AGPVLVCAPSNIAVDQLAEKIHK 476 (935)
T ss_pred chHHHHHHHHHHcCCceeeecCCCCCceehhHHHHHHHH-Hhc---CCceEEEcccchhHHHHHHHHHh
Confidence 578999999999999999999999999966655555433 222 34789999999999999999965
No 244
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.41 E-value=0.083 Score=60.11 Aligned_cols=31 Identities=23% Similarity=0.324 Sum_probs=21.8
Q ss_pred HHHHHHcCC---eEEEEcCCCchHHhHHHHHHHH
Q 002521 258 LLQAIARNQ---VIVISGETGCGKTTQLPQYILE 288 (913)
Q Consensus 258 il~~i~~~~---~vII~apTGSGKTt~~~~~ile 288 (913)
+..++..++ .++++||.|+||||.+-.++-.
T Consensus 28 l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~ 61 (363)
T PRK14961 28 ISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKS 61 (363)
T ss_pred HHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHH
Confidence 344445543 4689999999999988765543
No 245
>PRK05642 DNA replication initiation factor; Validated
Probab=95.38 E-value=0.045 Score=58.29 Aligned_cols=18 Identities=28% Similarity=0.584 Sum_probs=15.1
Q ss_pred CeEEEEcCCCchHHhHHH
Q 002521 266 QVIVISGETGCGKTTQLP 283 (913)
Q Consensus 266 ~~vII~apTGSGKTt~~~ 283 (913)
..+++.|++|+|||..+-
T Consensus 46 ~~l~l~G~~G~GKTHLl~ 63 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQ 63 (234)
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 568899999999997643
No 246
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=95.35 E-value=0.049 Score=65.52 Aligned_cols=52 Identities=13% Similarity=0.157 Sum_probs=38.6
Q ss_pred ccEEEEecchhhhcCCCCCeEEEEeCCCCcceeecCCCCCCcCCccccCHhhHHHHhcccCCC---CCcEEEE
Q 002521 585 IRKIVLATNMAEASITINDIVFVVDCGKAKETTYDALNNTPCLLPSWISQASARQRRGRAGRV---QPGQCYH 654 (913)
Q Consensus 585 ~~kVLVATniae~GIdIp~v~~VId~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~---~~G~c~~ 654 (913)
.++.|++--++-+|-|=|+|=.++- ..+.. |-.+=.|-+||.-|. ..|.-++
T Consensus 483 plRFIFS~waLrEGWDNPNVFtIck--------L~~S~----------SeiSK~QeVGRGLRLaVNe~G~RV~ 537 (985)
T COG3587 483 PLRFIFSKWALREGWDNPNVFTICK--------LRSSG----------SEISKLQEVGRGLRLAVNENGERVT 537 (985)
T ss_pred cceeeeehhHHhhcCCCCCeeEEEE--------ecCCC----------cchHHHHHhccceeeeeccccceec
Confidence 4899999999999999999865553 11111 445667999999997 6676555
No 247
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.35 E-value=0.12 Score=61.84 Aligned_cols=32 Identities=25% Similarity=0.360 Sum_probs=23.2
Q ss_pred HHHHHHHcCC---eEEEEcCCCchHHhHHHHHHHH
Q 002521 257 RLLQAIARNQ---VIVISGETGCGKTTQLPQYILE 288 (913)
Q Consensus 257 ~il~~i~~~~---~vII~apTGSGKTt~~~~~ile 288 (913)
.+..++..++ -++++||.|+||||.+-.+.-.
T Consensus 27 ~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAka 61 (700)
T PRK12323 27 ALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKS 61 (700)
T ss_pred HHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 4455555554 5699999999999988765543
No 248
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=95.32 E-value=0.062 Score=58.47 Aligned_cols=122 Identities=19% Similarity=0.191 Sum_probs=65.7
Q ss_pred CeEEEEcCCCchHHhHHHHHHHHHHHHhC-CCCc-eEEEEcchhHHHHHHHHHHHHHHhCCCcccEeeeEEeccccCCCC
Q 002521 266 QVIVISGETGCGKTTQLPQYILESEIESG-RGAF-CNIICTQPRRISAMAVSERVSAERGEPLGETVGYKVRLEGMKGKN 343 (913)
Q Consensus 266 ~~vII~apTGSGKTt~~~~~ile~~~~~~-~~~~-~~Ilv~qPrr~La~qva~rv~~~~~~~~g~~vGy~v~~e~~~~~~ 343 (913)
.+++|+|+||.|||+.+-.|.-.+-.... .+.. ..+++-.|...-....+..+-..+|......-
T Consensus 62 p~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~------------- 128 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRPRD------------- 128 (302)
T ss_pred CceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCCCC-------------
Confidence 58999999999999988777654321111 1111 23444456666666677777776665533211
Q ss_pred ceEEEEecHHHHHHHhcCCCCCCceEEEecccccc--C--cchHHHHHHHHHhCccCccceEEEecccc
Q 002521 344 THLLFCTSGILLRRLLSDHNLNGVTHVFVDEIHER--G--MNEDFLLIVLKDLLPRRRDLRLILMSATL 408 (913)
Q Consensus 344 ~~Ivv~T~g~Ll~~l~~~~~L~~~s~IIIDEaHer--~--~~~d~ll~llk~ll~~~~~~kiIlmSATl 408 (913)
.+--.+. ..++.+. --++.++||||+|.. | ......+..+|.+.. .-.+.+|+. .|.
T Consensus 129 -~~~~~~~-~~~~llr----~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~N-eL~ipiV~v-Gt~ 189 (302)
T PF05621_consen 129 -RVAKLEQ-QVLRLLR----RLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGN-ELQIPIVGV-GTR 189 (302)
T ss_pred -CHHHHHH-HHHHHHH----HcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhh-ccCCCeEEe-ccH
Confidence 0000011 1112221 236889999999952 2 223344555666533 223445544 454
No 249
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=95.31 E-value=0.11 Score=56.26 Aligned_cols=22 Identities=27% Similarity=0.296 Sum_probs=18.0
Q ss_pred CCeEEEEcCCCchHHhHHHHHH
Q 002521 265 NQVIVISGETGCGKTTQLPQYI 286 (913)
Q Consensus 265 ~~~vII~apTGSGKTt~~~~~i 286 (913)
..++++.||+|||||+.+-.+.
T Consensus 42 ~~~vll~GppGtGKTtlA~~ia 63 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVARILG 63 (261)
T ss_pred cceEEEEcCCCCCHHHHHHHHH
Confidence 3578999999999998876554
No 250
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=95.25 E-value=0.076 Score=62.33 Aligned_cols=114 Identities=21% Similarity=0.191 Sum_probs=94.1
Q ss_pred CCCcEEEEcCChHHHHHHHHHHHcCCCCCCCCCeEEEEecCCCChHHHHHHhccCCCCcc-EEEEecchhhhcCCCCCeE
Q 002521 527 CPGAVLVFMTGWEDISCLRDQLKSHPLLGDPNRVLLLTCHGSMPTSEQKFIFEKAPPNIR-KIVLATNMAEASITINDIV 605 (913)
Q Consensus 527 ~~g~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~g~~-kVLVATniae~GIdIp~v~ 605 (913)
.+..+|+|..-.+.+.-+.++|... ++.-+-+.|+....+|+.+...|....+ -.|++|-..+-||++...+
T Consensus 1043 egHRvL~yfQMTkM~dl~EdYl~yr-------~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGGLGINLTAAD 1115 (1185)
T KOG0388|consen 1043 EGHRVLMYFQMTKMIDLIEDYLVYR-------GYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGGLGINLTAAD 1115 (1185)
T ss_pred CCceEEehhHHHHHHHHHHHHHHhh-------ccceEEecCcchhhHHHHHHhhccCCceEEEEEecccCcccccccccc
Confidence 4568999999999999999999876 7888899999999999999999987554 5678999999999999999
Q ss_pred EEEeCCCCcceeecCCCCCCcCCccccCHhhHHHHhcccCCCCCcEEEEecChhhHH
Q 002521 606 FVVDCGKAKETTYDALNNTPCLLPSWISQASARQRRGRAGRVQPGQCYHLYPRCVYE 662 (913)
Q Consensus 606 ~VId~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~~~G~c~~L~t~~~~~ 662 (913)
.||. ||...+...- .++.-|+-|-|.++.-.+|+|.++...+
T Consensus 1116 TViF--------YdSDWNPT~D-------~QAMDRAHRLGQTrdvtvyrl~~rgTvE 1157 (1185)
T KOG0388|consen 1116 TVIF--------YDSDWNPTAD-------QQAMDRAHRLGQTRDVTVYRLITRGTVE 1157 (1185)
T ss_pred eEEE--------ecCCCCcchh-------hHHHHHHHhccCccceeeeeecccccHH
Confidence 9998 7766554432 3566777777777888999999987654
No 251
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=95.24 E-value=0.076 Score=57.24 Aligned_cols=24 Identities=21% Similarity=0.272 Sum_probs=20.2
Q ss_pred CCeEEEEcCCCchHHhHHHHHHHH
Q 002521 265 NQVIVISGETGCGKTTQLPQYILE 288 (913)
Q Consensus 265 ~~~vII~apTGSGKTt~~~~~ile 288 (913)
..+.+..||.|+|||..+..+..+
T Consensus 57 lp~~LFyGPpGTGKTStalafar~ 80 (346)
T KOG0989|consen 57 LPHYLFYGPPGTGKTSTALAFARA 80 (346)
T ss_pred CceEEeeCCCCCcHhHHHHHHHHH
Confidence 468899999999999888776654
No 252
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.22 E-value=0.028 Score=57.16 Aligned_cols=46 Identities=26% Similarity=0.316 Sum_probs=30.9
Q ss_pred eEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHH
Q 002521 267 VIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERV 318 (913)
Q Consensus 267 ~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv 318 (913)
.++|.||+|+|||+.+.+++.+.+ ..|..+.++-+.. ...++.+++
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~---~~g~~v~~~s~e~---~~~~~~~~~ 46 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGL---ARGEPGLYVTLEE---SPEELIENA 46 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH---HCCCcEEEEECCC---CHHHHHHHH
Confidence 378999999999999999988765 2344455454433 344444444
No 253
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=95.21 E-value=0.11 Score=59.71 Aligned_cols=22 Identities=32% Similarity=0.457 Sum_probs=18.1
Q ss_pred CeEEEEcCCCchHHhHHHHHHH
Q 002521 266 QVIVISGETGCGKTTQLPQYIL 287 (913)
Q Consensus 266 ~~vII~apTGSGKTt~~~~~il 287 (913)
.+++|+||+|+|||+.+-..+-
T Consensus 56 ~~~lI~G~~GtGKT~l~~~v~~ 77 (394)
T PRK00411 56 LNVLIYGPPGTGKTTTVKKVFE 77 (394)
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999987765543
No 254
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.20 E-value=0.071 Score=62.50 Aligned_cols=28 Identities=39% Similarity=0.480 Sum_probs=20.8
Q ss_pred HHHHcC---CeEEEEcCCCchHHhHHHHHHH
Q 002521 260 QAIARN---QVIVISGETGCGKTTQLPQYIL 287 (913)
Q Consensus 260 ~~i~~~---~~vII~apTGSGKTt~~~~~il 287 (913)
.++..+ +..+++||.|+||||.+-.+..
T Consensus 27 ~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk 57 (491)
T PRK14964 27 NAFTLNKIPQSILLVGASGVGKTTCARIISL 57 (491)
T ss_pred HHHHcCCCCceEEEECCCCccHHHHHHHHHH
Confidence 344444 4689999999999998765543
No 255
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.19 E-value=0.044 Score=64.97 Aligned_cols=32 Identities=25% Similarity=0.273 Sum_probs=22.5
Q ss_pred HHHHHHHcCC---eEEEEcCCCchHHhHHHHHHHH
Q 002521 257 RLLQAIARNQ---VIVISGETGCGKTTQLPQYILE 288 (913)
Q Consensus 257 ~il~~i~~~~---~vII~apTGSGKTt~~~~~ile 288 (913)
.+..++..++ ..+++||.|+|||+.+-.+...
T Consensus 27 ~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~ 61 (509)
T PRK14958 27 ALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKC 61 (509)
T ss_pred HHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHH
Confidence 3444454443 4799999999999988765543
No 256
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=95.15 E-value=0.06 Score=60.78 Aligned_cols=33 Identities=24% Similarity=0.284 Sum_probs=24.6
Q ss_pred HHHHHHHHHcCC---eEEEEcCCCchHHhHHHHHHH
Q 002521 255 KERLLQAIARNQ---VIVISGETGCGKTTQLPQYIL 287 (913)
Q Consensus 255 q~~il~~i~~~~---~vII~apTGSGKTt~~~~~il 287 (913)
.+.+..++..++ .++++||+|+|||+.+-.++.
T Consensus 32 ~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~ 67 (351)
T PRK09112 32 EAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLAN 67 (351)
T ss_pred HHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHH
Confidence 345566666666 589999999999998865543
No 257
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.13 E-value=0.11 Score=62.24 Aligned_cols=31 Identities=29% Similarity=0.473 Sum_probs=22.3
Q ss_pred HHHHHHcCC---eEEEEcCCCchHHhHHHHHHHH
Q 002521 258 LLQAIARNQ---VIVISGETGCGKTTQLPQYILE 288 (913)
Q Consensus 258 il~~i~~~~---~vII~apTGSGKTt~~~~~ile 288 (913)
+...+..++ .++++||.|+||||.+-.+...
T Consensus 25 L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~ 58 (584)
T PRK14952 25 LSSALDAGRINHAYLFSGPRGCGKTSSARILARS 58 (584)
T ss_pred HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 344455543 4689999999999988776643
No 258
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=95.12 E-value=0.1 Score=63.16 Aligned_cols=32 Identities=25% Similarity=0.359 Sum_probs=22.9
Q ss_pred HHHHHHHcCC---eEEEEcCCCchHHhHHHHHHHH
Q 002521 257 RLLQAIARNQ---VIVISGETGCGKTTQLPQYILE 288 (913)
Q Consensus 257 ~il~~i~~~~---~vII~apTGSGKTt~~~~~ile 288 (913)
.+..++..++ .+|++||.|+|||+.+-.+...
T Consensus 27 ~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~ 61 (709)
T PRK08691 27 ALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKS 61 (709)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 3444455554 5799999999999988766543
No 259
>PRK08939 primosomal protein DnaI; Reviewed
Probab=95.11 E-value=0.35 Score=53.56 Aligned_cols=26 Identities=23% Similarity=0.308 Sum_probs=20.1
Q ss_pred cCCeEEEEcCCCchHHhHHHHHHHHH
Q 002521 264 RNQVIVISGETGCGKTTQLPQYILES 289 (913)
Q Consensus 264 ~~~~vII~apTGSGKTt~~~~~ile~ 289 (913)
.++.+++.|++|+|||..+.....+.
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l 180 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANEL 180 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 35689999999999998776555443
No 260
>PRK08084 DNA replication initiation factor; Provisional
Probab=95.08 E-value=0.1 Score=55.50 Aligned_cols=24 Identities=21% Similarity=0.275 Sum_probs=18.6
Q ss_pred CCeEEEEcCCCchHHhHHHHHHHH
Q 002521 265 NQVIVISGETGCGKTTQLPQYILE 288 (913)
Q Consensus 265 ~~~vII~apTGSGKTt~~~~~ile 288 (913)
+..+++.||+|||||+.+-.+..+
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~ 68 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAE 68 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999876654443
No 261
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.05 E-value=0.066 Score=64.49 Aligned_cols=30 Identities=27% Similarity=0.390 Sum_probs=21.3
Q ss_pred HHHHHHcCC---eEEEEcCCCchHHhHHHHHHH
Q 002521 258 LLQAIARNQ---VIVISGETGCGKTTQLPQYIL 287 (913)
Q Consensus 258 il~~i~~~~---~vII~apTGSGKTt~~~~~il 287 (913)
+..++..++ -++++||.|+||||.+-.+..
T Consensus 28 L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk 60 (618)
T PRK14951 28 LTNALTQQRLHHAYLFTGTRGVGKTTVSRILAK 60 (618)
T ss_pred HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 334444443 469999999999998876543
No 262
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=95.05 E-value=0.25 Score=60.58 Aligned_cols=20 Identities=40% Similarity=0.609 Sum_probs=15.7
Q ss_pred eEEEEcCCCchHHhHHHHHH
Q 002521 267 VIVISGETGCGKTTQLPQYI 286 (913)
Q Consensus 267 ~vII~apTGSGKTt~~~~~i 286 (913)
.+.|.|+||+|||+.+-..+
T Consensus 783 vLYIyG~PGTGKTATVK~VL 802 (1164)
T PTZ00112 783 ILYISGMPGTGKTATVYSVI 802 (1164)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 35699999999997776544
No 263
>PHA02533 17 large terminase protein; Provisional
Probab=95.04 E-value=0.45 Score=56.74 Aligned_cols=161 Identities=14% Similarity=0.093 Sum_probs=90.5
Q ss_pred cCCCcHHHHHHHHHHHHcCCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHHHHHhCCCc
Q 002521 247 KSLPSFKEKERLLQAIARNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVSAERGEPL 326 (913)
Q Consensus 247 ~~lP~~~~q~~il~~i~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv~~~~~~~~ 326 (913)
.++++.++|..++..+..++-.++..+=..|||+.+..+++..++.. . ...|+++.|++.-|..+.+++.......-
T Consensus 56 ~Pf~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~~-~--~~~v~i~A~~~~QA~~vF~~ik~~ie~~P 132 (534)
T PHA02533 56 IKVQMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCFN-K--DKNVGILAHKASMAAEVLDRTKQAIELLP 132 (534)
T ss_pred eecCCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHhC-C--CCEEEEEeCCHHHHHHHHHHHHHHHHhCH
Confidence 56888999999999987777777888999999998886665544432 2 34788888999999999888865332100
Q ss_pred c-cEeeeEE--eccccCCCCceEEEEecHHHHHHHhcCCCCCCceEEEeccccccCcchHHHHHHHHHhCccCccceEEE
Q 002521 327 G-ETVGYKV--RLEGMKGKNTHLLFCTSGILLRRLLSDHNLNGVTHVFVDEIHERGMNEDFLLIVLKDLLPRRRDLRLIL 403 (913)
Q Consensus 327 g-~~vGy~v--~~e~~~~~~~~Ivv~T~g~Ll~~l~~~~~L~~~s~IIIDEaHer~~~~d~ll~llk~ll~~~~~~kiIl 403 (913)
. ...+... +..-....+..|.+.|... +.. .=.+.+++|+||+|...-..++...+. ..+......++++
T Consensus 133 ~l~~~~i~~~~~~~I~l~NGS~I~~lss~~--~t~----rG~~~~~liiDE~a~~~~~~e~~~ai~-p~lasg~~~r~ii 205 (534)
T PHA02533 133 DFLQPGIVEWNKGSIELENGSKIGAYASSP--DAV----RGNSFAMIYIDECAFIPNFIDFWLAIQ-PVISSGRSSKIII 205 (534)
T ss_pred HHhhcceeecCccEEEeCCCCEEEEEeCCC--Ccc----CCCCCceEEEeccccCCCHHHHHHHHH-HHHHcCCCceEEE
Confidence 0 0011000 0000012334555555421 111 112456899999995432223333332 2233223345666
Q ss_pred eccccCHHHHHhhh
Q 002521 404 MSATLNAELFSNYF 417 (913)
Q Consensus 404 mSATl~~~~~~~yf 417 (913)
.|..-....|.+.+
T Consensus 206 iSTp~G~n~fye~~ 219 (534)
T PHA02533 206 TSTPNGLNHFYDIW 219 (534)
T ss_pred EECCCchhhHHHHH
Confidence 66554333354443
No 264
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.04 E-value=0.21 Score=50.27 Aligned_cols=123 Identities=21% Similarity=0.241 Sum_probs=60.0
Q ss_pred eEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHHHHHhCCCcccEeeeEEeccccCCCCceE
Q 002521 267 VIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVSAERGEPLGETVGYKVRLEGMKGKNTHL 346 (913)
Q Consensus 267 ~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv~~~~~~~~g~~vGy~v~~e~~~~~~~~I 346 (913)
++++.|++|+||||.+..++.... ..+....++-+-++|..............+ ..+..... .
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~---~~g~~v~~i~~D~~~~~~~~~l~~~~~~~~--------~~~~~~~~--~---- 64 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLK---KKGKKVLLVAADTYRPAAIEQLRVLGEQVG--------VPVFEEGE--G---- 64 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH---HCCCcEEEEEcCCCChHHHHHHHHhcccCC--------eEEEecCC--C----
Confidence 578899999999998776654422 223344444455665444332222222211 11110000 0
Q ss_pred EEEecHHHH-HHHhcCCCCCCceEEEeccccccCcchHHHHHHHHHhCc-cCccceEEEeccccCH
Q 002521 347 LFCTSGILL-RRLLSDHNLNGVTHVFVDEIHERGMNEDFLLIVLKDLLP-RRRDLRLILMSATLNA 410 (913)
Q Consensus 347 vv~T~g~Ll-~~l~~~~~L~~~s~IIIDEaHer~~~~d~ll~llk~ll~-~~~~~kiIlmSATl~~ 410 (913)
..+..++ +.+.. ..-.++++||||.........+.+.. +..+.. ..++--++.++|+...
T Consensus 65 --~~~~~~~~~~~~~-~~~~~~d~viiDt~g~~~~~~~~l~~-l~~l~~~~~~~~~~lVv~~~~~~ 126 (173)
T cd03115 65 --KDPVSIAKRAIEH-AREENFDVVIVDTAGRLQIDENLMEE-LKKIKRVVKPDEVLLVVDAMTGQ 126 (173)
T ss_pred --CCHHHHHHHHHHH-HHhCCCCEEEEECcccchhhHHHHHH-HHHHHhhcCCCeEEEEEECCCCh
Confidence 0122222 11111 12257889999999854443344332 233332 2355567777776543
No 265
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.02 E-value=0.1 Score=62.10 Aligned_cols=31 Identities=26% Similarity=0.367 Sum_probs=22.9
Q ss_pred HHHHHHHcCC---eEEEEcCCCchHHhHHHHHHH
Q 002521 257 RLLQAIARNQ---VIVISGETGCGKTTQLPQYIL 287 (913)
Q Consensus 257 ~il~~i~~~~---~vII~apTGSGKTt~~~~~il 287 (913)
.+..++..++ .++++||.|+||||.+-.++.
T Consensus 27 ~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk 60 (546)
T PRK14957 27 SLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAK 60 (546)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3555565554 378999999999998876654
No 266
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=95.01 E-value=0.14 Score=59.11 Aligned_cols=36 Identities=25% Similarity=0.354 Sum_probs=23.3
Q ss_pred CeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEc
Q 002521 266 QVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICT 304 (913)
Q Consensus 266 ~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~ 304 (913)
+.+++.|++|+|||..+ +.+...+.... +...++++
T Consensus 137 n~l~l~G~~G~GKThL~-~ai~~~l~~~~--~~~~v~yi 172 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLL-HAIGNEILENN--PNAKVVYV 172 (405)
T ss_pred CeEEEECCCCCcHHHHH-HHHHHHHHHhC--CCCcEEEE
Confidence 45789999999999876 44444444332 23456665
No 267
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.99 E-value=0.043 Score=68.06 Aligned_cols=68 Identities=19% Similarity=0.291 Sum_probs=50.1
Q ss_pred cHHHHHHHH----HHHHcCCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHHHH
Q 002521 251 SFKEKERLL----QAIARNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVSA 320 (913)
Q Consensus 251 ~~~~q~~il----~~i~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv~~ 320 (913)
+++.|.+++ +++..+++.++.+|||+|||++++-+.+...... +...+|+++..|..-..|+.+.+++
T Consensus 11 ~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~--~~~~kIiy~sRThsQl~q~i~Elk~ 82 (705)
T TIGR00604 11 IYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEK--PEVRKIIYASRTHSQLEQATEELRK 82 (705)
T ss_pred CCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhc--cccccEEEEcccchHHHHHHHHHHh
Confidence 466676555 4557789999999999999999888888765322 2234788877887777777776665
No 268
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=94.96 E-value=0.15 Score=58.92 Aligned_cols=125 Identities=24% Similarity=0.289 Sum_probs=68.6
Q ss_pred CeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHHHHHhCCCcccEeeeEEeccccCCCCce
Q 002521 266 QVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVSAERGEPLGETVGYKVRLEGMKGKNTH 345 (913)
Q Consensus 266 ~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv~~~~~~~~g~~vGy~v~~e~~~~~~~~ 345 (913)
.+++++|++|+||||.+..++.... ...|..+.++.+=++|..|....++++...+.++.. .. ...
T Consensus 100 ~vi~~vG~~GsGKTTtaakLA~~l~--~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~--------~~-~~~--- 165 (428)
T TIGR00959 100 TVILMVGLQGSGKTTTCGKLAYYLK--KKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFA--------LG-KGQ--- 165 (428)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHH--HhCCCeEEEEeccccchHHHHHHHHHHHhcCCceEe--------cC-CCC---
Confidence 4788999999999998887765522 123556677777788887776666665544432111 00 001
Q ss_pred EEEEecHHHHHHHhcCCCCCCceEEEeccccccCcchHHHHHHHHHhCc-cCccceEEEeccccC
Q 002521 346 LLFCTSGILLRRLLSDHNLNGVTHVFVDEIHERGMNEDFLLIVLKDLLP-RRRDLRLILMSATLN 409 (913)
Q Consensus 346 Ivv~T~g~Ll~~l~~~~~L~~~s~IIIDEaHer~~~~d~ll~llk~ll~-~~~~~kiIlmSATl~ 409 (913)
.|..+...........++++||||=+-....+.+ +..-+..+.. ..|+--++.++||..
T Consensus 166 ----~P~~i~~~al~~~~~~~~DvVIIDTaGr~~~d~~-l~~eL~~i~~~~~p~e~lLVvda~tg 225 (428)
T TIGR00959 166 ----SPVEIARRALEYAKENGFDVVIVDTAGRLQIDEE-LMEELAAIKEILNPDEILLVVDAMTG 225 (428)
T ss_pred ----CHHHHHHHHHHHHHhcCCCEEEEeCCCccccCHH-HHHHHHHHHHhhCCceEEEEEeccch
Confidence 1222211111111235689999998873333333 3333333222 234445777888753
No 269
>PRK12377 putative replication protein; Provisional
Probab=94.95 E-value=0.36 Score=51.77 Aligned_cols=24 Identities=25% Similarity=0.239 Sum_probs=18.7
Q ss_pred CCeEEEEcCCCchHHhHHHHHHHH
Q 002521 265 NQVIVISGETGCGKTTQLPQYILE 288 (913)
Q Consensus 265 ~~~vII~apTGSGKTt~~~~~ile 288 (913)
...+++.|++|+|||..+.....+
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~ 124 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNR 124 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999876654443
No 270
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=94.89 E-value=0.19 Score=53.04 Aligned_cols=25 Identities=20% Similarity=0.497 Sum_probs=19.5
Q ss_pred cCCeEEEEcCCCchHHhHHHHHHHH
Q 002521 264 RNQVIVISGETGCGKTTQLPQYILE 288 (913)
Q Consensus 264 ~~~~vII~apTGSGKTt~~~~~ile 288 (913)
.++.+++.||+|+|||+.+-.+..+
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~ 65 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVAD 65 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999877655443
No 271
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=94.88 E-value=0.11 Score=58.22 Aligned_cols=34 Identities=29% Similarity=0.468 Sum_probs=24.5
Q ss_pred HHHHHHHHHcCC--eEEEEcCCCchHHhHHHHHHHH
Q 002521 255 KERLLQAIARNQ--VIVISGETGCGKTTQLPQYILE 288 (913)
Q Consensus 255 q~~il~~i~~~~--~vII~apTGSGKTt~~~~~ile 288 (913)
.+.+...+..++ .+++.||+|+|||+.+-.+..+
T Consensus 24 ~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~ 59 (337)
T PRK12402 24 VERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARE 59 (337)
T ss_pred HHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 344445555555 7999999999999988766543
No 272
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=94.85 E-value=0.15 Score=57.81 Aligned_cols=119 Identities=22% Similarity=0.257 Sum_probs=56.7
Q ss_pred eEEEEcCCCchHHhHHHHHHHHHHHHhCCCC-ceEEEEcchhHHHHHHHHHHHHHHhCCCcccEeeeEEeccccCCCCce
Q 002521 267 VIVISGETGCGKTTQLPQYILESEIESGRGA-FCNIICTQPRRISAMAVSERVSAERGEPLGETVGYKVRLEGMKGKNTH 345 (913)
Q Consensus 267 ~vII~apTGSGKTt~~~~~ile~~~~~~~~~-~~~Ilv~qPrr~La~qva~rv~~~~~~~~g~~vGy~v~~e~~~~~~~~ 345 (913)
+++|.|+||+|||..+ .++.+.+.....+. .+-|=| ..----.|+...+...++. ....|
T Consensus 44 n~~iyG~~GTGKT~~~-~~v~~~l~~~~~~~~~~yINc--~~~~t~~~i~~~i~~~~~~--~p~~g-------------- 104 (366)
T COG1474 44 NIIIYGPTGTGKTATV-KFVMEELEESSANVEVVYINC--LELRTPYQVLSKILNKLGK--VPLTG-------------- 104 (366)
T ss_pred cEEEECCCCCCHhHHH-HHHHHHHHhhhccCceEEEee--eeCCCHHHHHHHHHHHcCC--CCCCC--------------
Confidence 5899999999998654 56666665443333 122222 1111122333444443330 00011
Q ss_pred EEEEecHHHHHHHhcCCCCCCceEEEeccccccCc-chHHHHHHHHHhCccCccce--EEEecccc
Q 002521 346 LLFCTSGILLRRLLSDHNLNGVTHVFVDEIHERGM-NEDFLLIVLKDLLPRRRDLR--LILMSATL 408 (913)
Q Consensus 346 Ivv~T~g~Ll~~l~~~~~L~~~s~IIIDEaHer~~-~~d~ll~llk~ll~~~~~~k--iIlmSATl 408 (913)
..+.+.+-.....-......-+||+||++...- ..+.+..+++..-.. +.+ +|+.+-++
T Consensus 105 --~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~--~~~v~vi~i~n~~ 166 (366)
T COG1474 105 --DSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGEN--KVKVSIIAVSNDD 166 (366)
T ss_pred --CchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhcccc--ceeEEEEEEeccH
Confidence 122222322222222456677899999995421 225666665443332 334 44444443
No 273
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.82 E-value=0.11 Score=62.34 Aligned_cols=33 Identities=27% Similarity=0.338 Sum_probs=23.6
Q ss_pred HHHHHHHHcCC---eEEEEcCCCchHHhHHHHHHHH
Q 002521 256 ERLLQAIARNQ---VIVISGETGCGKTTQLPQYILE 288 (913)
Q Consensus 256 ~~il~~i~~~~---~vII~apTGSGKTt~~~~~ile 288 (913)
..+..++..++ .++++||.|+|||+.+-.+...
T Consensus 25 ~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~ 60 (702)
T PRK14960 25 RALSSALERGRLHHAYLFTGTRGVGKTTIARILAKC 60 (702)
T ss_pred HHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34455555554 5699999999999988765543
No 274
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=94.81 E-value=0.063 Score=65.43 Aligned_cols=118 Identities=19% Similarity=0.178 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHcCCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHHHHHhCC--CcccEe
Q 002521 253 KEKERLLQAIARNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVSAERGE--PLGETV 330 (913)
Q Consensus 253 ~~q~~il~~i~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv~~~~~~--~~g~~v 330 (913)
.|++++..++....-.+|.|=+|+||||.+...|--.. ..+ .+|+.|.=|-.++..+-.++....-. .+|..-
T Consensus 673 dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~LIkiL~-~~g----kkVLLtsyThsAVDNILiKL~~~~i~~lRLG~~~ 747 (1100)
T KOG1805|consen 673 DQRQALLKALAAEDYALILGMPGTGKTTTISLLIKILV-ALG----KKVLLTSYTHSAVDNILIKLKGFGIYILRLGSEE 747 (1100)
T ss_pred HHHHHHHHHHhccchheeecCCCCCchhhHHHHHHHHH-HcC----CeEEEEehhhHHHHHHHHHHhccCcceeecCCcc
Confidence 57788888888999999999999999998876654332 222 26888888888888777666542111 112110
Q ss_pred eeE--Ee----ccc----------cCCCCceEEEEecHHHHHHHhcCCCCCCceEEEecccccc
Q 002521 331 GYK--VR----LEG----------MKGKNTHLLFCTSGILLRRLLSDHNLNGVTHVFVDEIHER 378 (913)
Q Consensus 331 Gy~--v~----~e~----------~~~~~~~Ivv~T~g~Ll~~l~~~~~L~~~s~IIIDEaHer 378 (913)
... ++ ... ..-..+.||.||-=-+-.-+. ....+++.|||||-..
T Consensus 748 kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~plf---~~R~FD~cIiDEASQI 808 (1100)
T KOG1805|consen 748 KIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINHPLF---VNRQFDYCIIDEASQI 808 (1100)
T ss_pred ccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCchhh---hccccCEEEEcccccc
Confidence 000 00 000 011456788887411111111 3456999999999843
No 275
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=94.80 E-value=0.12 Score=62.66 Aligned_cols=121 Identities=21% Similarity=0.242 Sum_probs=72.7
Q ss_pred eEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHHHHHhCCCccc--EeeeEEecc--ccCCC
Q 002521 267 VIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVSAERGEPLGE--TVGYKVRLE--GMKGK 342 (913)
Q Consensus 267 ~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv~~~~~~~~g~--~vGy~v~~e--~~~~~ 342 (913)
.++|+|.-|=|||.++-+.+.-.. ...+ ...|+||.|+.+.+..+.+...+-+.. +|. .|-+....+ ....+
T Consensus 233 ~~vlTAdRGRGKSA~lGi~~~~~~--~~~~-~~~iiVTAP~~~nv~~Lf~fa~~~l~~-lg~~~~v~~d~~g~~~~~~~~ 308 (758)
T COG1444 233 ALVLTADRGRGKSAALGIALAAAA--RLAG-SVRIIVTAPTPANVQTLFEFAGKGLEF-LGYKRKVAPDALGEIREVSGD 308 (758)
T ss_pred eEEEEcCCCCcHhHHHhHHHHHHH--HhcC-CceEEEeCCCHHHHHHHHHHHHHhHHH-hCCccccccccccceeeecCC
Confidence 899999999999999887773322 1111 568999999999998887766542211 111 011110000 11112
Q ss_pred CceEEEEecHHHHHHHhcCCCCCCceEEEeccccccCcchHHHHHHHHHhCccCccceEEEeccccC
Q 002521 343 NTHLLFCTSGILLRRLLSDHNLNGVTHVFVDEIHERGMNEDFLLIVLKDLLPRRRDLRLILMSATLN 409 (913)
Q Consensus 343 ~~~Ivv~T~g~Ll~~l~~~~~L~~~s~IIIDEaHer~~~~d~ll~llk~ll~~~~~~kiIlmSATl~ 409 (913)
...|-|.+|.... ..-++||||||= ++...++. .++... +.++||.|+.
T Consensus 309 ~~~i~y~~P~~a~---------~~~DllvVDEAA--aIplplL~----~l~~~~---~rv~~sTTIh 357 (758)
T COG1444 309 GFRIEYVPPDDAQ---------EEADLLVVDEAA--AIPLPLLH----KLLRRF---PRVLFSTTIH 357 (758)
T ss_pred ceeEEeeCcchhc---------ccCCEEEEehhh--cCChHHHH----HHHhhc---CceEEEeeec
Confidence 3346677775443 126899999997 34444443 333332 4689999984
No 276
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=94.78 E-value=0.32 Score=51.24 Aligned_cols=103 Identities=17% Similarity=0.187 Sum_probs=55.2
Q ss_pred eEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHHHHHhCCCcccEeeeEEeccccCCCCceE
Q 002521 267 VIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVSAERGEPLGETVGYKVRLEGMKGKNTHL 346 (913)
Q Consensus 267 ~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv~~~~~~~~g~~vGy~v~~e~~~~~~~~I 346 (913)
-++|.||+|+|||. ..+.+...+..... ..+|+++.. ..........+..
T Consensus 36 ~l~l~G~~G~GKTH-LL~Ai~~~~~~~~~--~~~v~y~~~-~~f~~~~~~~~~~-------------------------- 85 (219)
T PF00308_consen 36 PLFLYGPSGLGKTH-LLQAIANEAQKQHP--GKRVVYLSA-EEFIREFADALRD-------------------------- 85 (219)
T ss_dssp EEEEEESTTSSHHH-HHHHHHHHHHHHCT--TS-EEEEEH-HHHHHHHHHHHHT--------------------------
T ss_pred ceEEECCCCCCHHH-HHHHHHHHHHhccc--cccceeecH-HHHHHHHHHHHHc--------------------------
Confidence 58999999999997 34555555443322 345666532 2333333332211
Q ss_pred EEEecHHHHHHHhcCCCCCCceEEEeccccccCcc---hHHHHHHHHHhCccCccceEEEeccccC
Q 002521 347 LFCTSGILLRRLLSDHNLNGVTHVFVDEIHERGMN---EDFLLIVLKDLLPRRRDLRLILMSATLN 409 (913)
Q Consensus 347 vv~T~g~Ll~~l~~~~~L~~~s~IIIDEaHer~~~---~d~ll~llk~ll~~~~~~kiIlmSATl~ 409 (913)
.....+...+ ..+++||||++|.-.-. .+.+..++..+.... -++|+.|...+
T Consensus 86 --~~~~~~~~~~------~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~--k~li~ts~~~P 141 (219)
T PF00308_consen 86 --GEIEEFKDRL------RSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESG--KQLILTSDRPP 141 (219)
T ss_dssp --TSHHHHHHHH------CTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTT--SEEEEEESS-T
T ss_pred --ccchhhhhhh------hcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhC--CeEEEEeCCCC
Confidence 0122333333 57899999999964322 344455555544432 26666665543
No 277
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=94.77 E-value=0.076 Score=53.11 Aligned_cols=53 Identities=17% Similarity=0.184 Sum_probs=29.2
Q ss_pred HHHHHhcCCCCCCceEEEeccccccCcchHHHHHHHHHhCccCccceEEEecccc
Q 002521 354 LLRRLLSDHNLNGVTHVFVDEIHERGMNEDFLLIVLKDLLPRRRDLRLILMSATL 408 (913)
Q Consensus 354 Ll~~l~~~~~L~~~s~IIIDEaHer~~~~d~ll~llk~ll~~~~~~kiIlmSATl 408 (913)
+...+...+.-..+.++||||||.+ ..+..-.+||.+=.-..+..+|++|-.+
T Consensus 90 i~~~~~~~~~~~~~KviiI~~ad~l--~~~a~NaLLK~LEepp~~~~fiL~t~~~ 142 (162)
T PF13177_consen 90 IIEFLSLSPSEGKYKVIIIDEADKL--TEEAQNALLKTLEEPPENTYFILITNNP 142 (162)
T ss_dssp HHHHCTSS-TTSSSEEEEEETGGGS---HHHHHHHHHHHHSTTTTEEEEEEES-G
T ss_pred HHHHHHHHHhcCCceEEEeehHhhh--hHHHHHHHHHHhcCCCCCEEEEEEECCh
Confidence 3333334445578999999999954 3344445554443333455566655543
No 278
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=94.74 E-value=0.25 Score=46.73 Aligned_cols=19 Identities=37% Similarity=0.541 Sum_probs=15.6
Q ss_pred EEEEcCCCchHHhHHHHHH
Q 002521 268 IVISGETGCGKTTQLPQYI 286 (913)
Q Consensus 268 vII~apTGSGKTt~~~~~i 286 (913)
+++.||.|+|||+.+-..+
T Consensus 1 ill~G~~G~GKT~l~~~la 19 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALA 19 (132)
T ss_dssp EEEESSTTSSHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHH
Confidence 6899999999998775544
No 279
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.72 E-value=0.086 Score=60.84 Aligned_cols=39 Identities=36% Similarity=0.457 Sum_probs=25.3
Q ss_pred CcHHHHH-HHHHHHHc-CCeEEEEcCCCchHHhHHHHHHHH
Q 002521 250 PSFKEKE-RLLQAIAR-NQVIVISGETGCGKTTQLPQYILE 288 (913)
Q Consensus 250 P~~~~q~-~il~~i~~-~~~vII~apTGSGKTt~~~~~ile 288 (913)
..+..+. .+...+.. +..++|+|||||||||....++-+
T Consensus 241 g~~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTTLY~~L~~ 281 (500)
T COG2804 241 GMSPFQLARLLRLLNRPQGLILVTGPTGSGKTTTLYAALSE 281 (500)
T ss_pred CCCHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 3344444 44444443 447889999999999877655543
No 280
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=94.71 E-value=0.11 Score=64.23 Aligned_cols=148 Identities=17% Similarity=0.144 Sum_probs=81.2
Q ss_pred HHHHHHHHHHH----HcCCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHHHHHh-CCCc
Q 002521 252 FKEKERLLQAI----ARNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVSAER-GEPL 326 (913)
Q Consensus 252 ~~~q~~il~~i----~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv~~~~-~~~~ 326 (913)
..||..=++.+ .+|=+-|+.-+.|-|||.|.+-++.....+.+.-+.-.||| ||-.+.+ +-..+++.+ |.++
T Consensus 617 ReYQkiGLdWLatLYeknlNGILADEmGLGKTIQtISllAhLACeegnWGPHLIVV--pTsviLn-WEMElKRwcPglKI 693 (1958)
T KOG0391|consen 617 REYQKIGLDWLATLYEKNLNGILADEMGLGKTIQTISLLAHLACEEGNWGPHLIVV--PTSVILN-WEMELKRWCPGLKI 693 (1958)
T ss_pred HHHHHhhHHHHHHHHHhcccceehhhhcccchhHHHHHHHHHHhcccCCCCceEEe--echhhhh-hhHHHhhhCCcceE
Confidence 35666555554 45668899999999999888766665444433322336777 8866543 222222211 1111
Q ss_pred ccEeeeE-----EeccccCCCCceEEEEecHHHHHHHhcCCCCCCceEEEecccccc-CcchHHHHHHHHHhCccCccce
Q 002521 327 GETVGYK-----VRLEGMKGKNTHLLFCTSGILLRRLLSDHNLNGVTHVFVDEIHER-GMNEDFLLIVLKDLLPRRRDLR 400 (913)
Q Consensus 327 g~~vGy~-----v~~e~~~~~~~~Ivv~T~g~Ll~~l~~~~~L~~~s~IIIDEaHer-~~~~d~ll~llk~ll~~~~~~k 400 (913)
-...|-. -|.++......+|.|+....+++-+.. ..-.++.++|+||+|.- ++... ....++..+.. |
T Consensus 694 LTYyGs~kErkeKRqgW~kPnaFHVCItSYklv~qd~~A-FkrkrWqyLvLDEaqnIKnfksq----rWQAllnfnsq-r 767 (1958)
T KOG0391|consen 694 LTYYGSHKERKEKRQGWAKPNAFHVCITSYKLVFQDLTA-FKRKRWQYLVLDEAQNIKNFKSQ----RWQALLNFNSQ-R 767 (1958)
T ss_pred eeecCCHHHHHHHhhcccCCCeeEEeehhhHHHHhHHHH-HHhhccceeehhhhhhhcchhHH----HHHHHhccchh-h
Confidence 1112211 122333444568888888777664421 13357899999999942 22222 22233333322 5
Q ss_pred EEEecccc
Q 002521 401 LILMSATL 408 (913)
Q Consensus 401 iIlmSATl 408 (913)
-++++.|+
T Consensus 768 RLLLtgTP 775 (1958)
T KOG0391|consen 768 RLLLTGTP 775 (1958)
T ss_pred eeeecCCc
Confidence 57777774
No 281
>PRK06921 hypothetical protein; Provisional
Probab=94.71 E-value=0.34 Score=52.60 Aligned_cols=23 Identities=35% Similarity=0.528 Sum_probs=18.5
Q ss_pred cCCeEEEEcCCCchHHhHHHHHH
Q 002521 264 RNQVIVISGETGCGKTTQLPQYI 286 (913)
Q Consensus 264 ~~~~vII~apTGSGKTt~~~~~i 286 (913)
.+..+++.|+||+|||..+..++
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia 138 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAA 138 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHH
Confidence 46789999999999998765443
No 282
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=94.70 E-value=0.23 Score=54.49 Aligned_cols=22 Identities=27% Similarity=0.379 Sum_probs=17.8
Q ss_pred CCeEEEEcCCCchHHhHHHHHH
Q 002521 265 NQVIVISGETGCGKTTQLPQYI 286 (913)
Q Consensus 265 ~~~vII~apTGSGKTt~~~~~i 286 (913)
+..+++.||+|||||+.+-.+.
T Consensus 58 ~~~vll~G~pGTGKT~lA~~ia 79 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVALRMA 79 (284)
T ss_pred CceEEEEcCCCCCHHHHHHHHH
Confidence 4479999999999998875443
No 283
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=94.63 E-value=0.071 Score=58.88 Aligned_cols=54 Identities=22% Similarity=0.306 Sum_probs=37.1
Q ss_pred HHHHHHHHHcCCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHH
Q 002521 255 KERLLQAIARNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISA 311 (913)
Q Consensus 255 q~~il~~i~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La 311 (913)
.+.+..++..+.+++|+|+|||||||.+-. ++..+.. ..+..+|+++.-..++.
T Consensus 122 ~~~L~~~v~~~~~ilI~G~tGSGKTTll~a-l~~~i~~--~~~~~ri~tiEd~~El~ 175 (299)
T TIGR02782 122 RDVLREAVLARKNILVVGGTGSGKTTLANA-LLAEIAK--NDPTDRVVIIEDTRELQ 175 (299)
T ss_pred HHHHHHHHHcCCeEEEECCCCCCHHHHHHH-HHHHhhc--cCCCceEEEECCchhhc
Confidence 445666677888999999999999997754 3343321 12245788887777763
No 284
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=94.61 E-value=0.24 Score=57.90 Aligned_cols=48 Identities=19% Similarity=0.073 Sum_probs=28.2
Q ss_pred CeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHH
Q 002521 266 QVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSER 317 (913)
Q Consensus 266 ~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~r 317 (913)
+.+++.|++|+|||..+ +.+...+.... +..+++++.+ ..+...+...
T Consensus 142 npl~i~G~~G~GKTHLl-~Ai~~~l~~~~--~~~~v~yv~~-~~f~~~~~~~ 189 (450)
T PRK14087 142 NPLFIYGESGMGKTHLL-KAAKNYIESNF--SDLKVSYMSG-DEFARKAVDI 189 (450)
T ss_pred CceEEECCCCCcHHHHH-HHHHHHHHHhC--CCCeEEEEEH-HHHHHHHHHH
Confidence 45889999999999765 45555443322 2346666544 4444444333
No 285
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=94.58 E-value=0.11 Score=59.74 Aligned_cols=32 Identities=25% Similarity=0.420 Sum_probs=26.7
Q ss_pred HHHHHHHHHcCCeEEEEcCCCchHHhHHHHHH
Q 002521 255 KERLLQAIARNQVIVISGETGCGKTTQLPQYI 286 (913)
Q Consensus 255 q~~il~~i~~~~~vII~apTGSGKTt~~~~~i 286 (913)
.+.++.++..++++++.||+|+|||+.+-...
T Consensus 184 le~l~~~L~~~~~iil~GppGtGKT~lA~~la 215 (459)
T PRK11331 184 IETILKRLTIKKNIILQGPPGVGKTFVARRLA 215 (459)
T ss_pred HHHHHHHHhcCCCEEEECCCCCCHHHHHHHHH
Confidence 45677888889999999999999998886543
No 286
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.57 E-value=0.047 Score=64.56 Aligned_cols=22 Identities=32% Similarity=0.445 Sum_probs=17.4
Q ss_pred eEEEEcCCCchHHhHHHHHHHH
Q 002521 267 VIVISGETGCGKTTQLPQYILE 288 (913)
Q Consensus 267 ~vII~apTGSGKTt~~~~~ile 288 (913)
.++++||.|+||||.+-.+...
T Consensus 38 a~Lf~GppGtGKTTlA~~lA~~ 59 (504)
T PRK14963 38 AYLFSGPRGVGKTTTARLIAMA 59 (504)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3499999999999988655433
No 287
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.57 E-value=0.19 Score=58.96 Aligned_cols=30 Identities=27% Similarity=0.454 Sum_probs=21.5
Q ss_pred HHHHHHcCC---eEEEEcCCCchHHhHHHHHHH
Q 002521 258 LLQAIARNQ---VIVISGETGCGKTTQLPQYIL 287 (913)
Q Consensus 258 il~~i~~~~---~vII~apTGSGKTt~~~~~il 287 (913)
+..++..++ .++++||+|+||||.+-.+.-
T Consensus 26 L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~ 58 (472)
T PRK14962 26 IINALKKNSISHAYIFAGPRGTGKTTVARILAK 58 (472)
T ss_pred HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 344455554 369999999999998876554
No 288
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=94.56 E-value=0.2 Score=56.85 Aligned_cols=21 Identities=33% Similarity=0.460 Sum_probs=17.2
Q ss_pred CeEEEEcCCCchHHhHHHHHH
Q 002521 266 QVIVISGETGCGKTTQLPQYI 286 (913)
Q Consensus 266 ~~vII~apTGSGKTt~~~~~i 286 (913)
..++|+||+|+|||+.+-.++
T Consensus 41 ~~i~I~G~~GtGKT~l~~~~~ 61 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAVTKYVM 61 (365)
T ss_pred CcEEEECCCCCCHHHHHHHHH
Confidence 589999999999998765443
No 289
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=94.54 E-value=0.12 Score=52.93 Aligned_cols=32 Identities=19% Similarity=0.319 Sum_probs=23.6
Q ss_pred HHHHHHHcC---CeEEEEcCCCchHHhHHHHHHHH
Q 002521 257 RLLQAIARN---QVIVISGETGCGKTTQLPQYILE 288 (913)
Q Consensus 257 ~il~~i~~~---~~vII~apTGSGKTt~~~~~ile 288 (913)
.+...+..+ ..+++.||+|+|||+.+-.++..
T Consensus 3 ~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~ 37 (188)
T TIGR00678 3 QLKRALEKGRLAHAYLFAGPEGVGKELLALALAKA 37 (188)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 355566665 35889999999999888766543
No 290
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=94.41 E-value=0.37 Score=55.29 Aligned_cols=22 Identities=14% Similarity=0.427 Sum_probs=17.9
Q ss_pred CeEEEEcCCCchHHhHHHHHHH
Q 002521 266 QVIVISGETGCGKTTQLPQYIL 287 (913)
Q Consensus 266 ~~vII~apTGSGKTt~~~~~il 287 (913)
..+++.||.|+|||+.+..+..
T Consensus 37 ha~Lf~Gp~G~GKt~lA~~lA~ 58 (394)
T PRK07940 37 HAWLFTGPPGSGRSVAARAFAA 58 (394)
T ss_pred eEEEEECCCCCcHHHHHHHHHH
Confidence 3588999999999988776543
No 291
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=94.37 E-value=0.25 Score=59.61 Aligned_cols=50 Identities=14% Similarity=0.174 Sum_probs=29.1
Q ss_pred HHHHHhcCCCCCCceEEEeccccccCcchHHHHHHHHHhCccCccceEEEec
Q 002521 354 LLRRLLSDHNLNGVTHVFVDEIHERGMNEDFLLIVLKDLLPRRRDLRLILMS 405 (913)
Q Consensus 354 Ll~~l~~~~~L~~~s~IIIDEaHer~~~~d~ll~llk~ll~~~~~~kiIlmS 405 (913)
++..+...+....+.+|||||+|..+. .-...+++.+-.-.+...+|+.+
T Consensus 120 Iie~~~~~P~~a~~KVvIIDEad~Ls~--~a~naLLKtLEePp~~~~fIl~t 169 (598)
T PRK09111 120 IIESVRYRPVSARYKVYIIDEVHMLST--AAFNALLKTLEEPPPHVKFIFAT 169 (598)
T ss_pred HHHHHHhchhcCCcEEEEEEChHhCCH--HHHHHHHHHHHhCCCCeEEEEEe
Confidence 344444456778899999999996542 22334444433333455566644
No 292
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=94.35 E-value=0.3 Score=55.47 Aligned_cols=63 Identities=19% Similarity=0.057 Sum_probs=36.1
Q ss_pred ceEEEEecHHHHHHHhcCCCCCCceEEEeccccccCcchHHHHHHHHHhCccCccceEEEecccc
Q 002521 344 THLLFCTSGILLRRLLSDHNLNGVTHVFVDEIHERGMNEDFLLIVLKDLLPRRRDLRLILMSATL 408 (913)
Q Consensus 344 ~~Ivv~T~g~Ll~~l~~~~~L~~~s~IIIDEaHer~~~~d~ll~llk~ll~~~~~~kiIlmSATl 408 (913)
..|.|-..-.+.+.+...+......+|||||+|.++ ......++|.+-.-.++..+|++|...
T Consensus 119 ~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~--~~aanaLLK~LEepp~~~~~IL~t~~~ 181 (365)
T PRK07471 119 TVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMN--ANAANALLKVLEEPPARSLFLLVSHAP 181 (365)
T ss_pred ccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcC--HHHHHHHHHHHhcCCCCeEEEEEECCc
Confidence 345444444445555445566788999999999554 344445555543333344555555544
No 293
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=94.35 E-value=0.14 Score=50.22 Aligned_cols=24 Identities=42% Similarity=0.527 Sum_probs=19.5
Q ss_pred eEEEEcCCCchHHhHHHHHHHHHH
Q 002521 267 VIVISGETGCGKTTQLPQYILESE 290 (913)
Q Consensus 267 ~vII~apTGSGKTt~~~~~ile~~ 290 (913)
.++|.|++|+|||+.+..++....
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~ 24 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIA 24 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHH
Confidence 368999999999998887766543
No 294
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=94.32 E-value=0.077 Score=58.98 Aligned_cols=53 Identities=26% Similarity=0.270 Sum_probs=36.0
Q ss_pred HHHHHHHHcCCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHH
Q 002521 256 ERLLQAIARNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISA 311 (913)
Q Consensus 256 ~~il~~i~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La 311 (913)
+-+..++..+.+++|+|+|||||||.+-. ++..+... .+..+|+++..+.++.
T Consensus 135 ~~L~~~v~~~~nilI~G~tGSGKTTll~a-L~~~i~~~--~~~~rivtiEd~~El~ 187 (323)
T PRK13833 135 SVIRSAIDSRLNIVISGGTGSGKTTLANA-VIAEIVAS--APEDRLVILEDTAEIQ 187 (323)
T ss_pred HHHHHHHHcCCeEEEECCCCCCHHHHHHH-HHHHHhcC--CCCceEEEecCCcccc
Confidence 44566677788999999999999987743 44433211 1234788877777753
No 295
>PLN03025 replication factor C subunit; Provisional
Probab=94.32 E-value=0.17 Score=56.48 Aligned_cols=23 Identities=35% Similarity=0.537 Sum_probs=18.5
Q ss_pred CeEEEEcCCCchHHhHHHHHHHH
Q 002521 266 QVIVISGETGCGKTTQLPQYILE 288 (913)
Q Consensus 266 ~~vII~apTGSGKTt~~~~~ile 288 (913)
.++++.||+|+|||+.+-.+..+
T Consensus 35 ~~lll~Gp~G~GKTtla~~la~~ 57 (319)
T PLN03025 35 PNLILSGPPGTGKTTSILALAHE 57 (319)
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999887665443
No 296
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=94.30 E-value=0.13 Score=57.62 Aligned_cols=27 Identities=26% Similarity=0.401 Sum_probs=20.4
Q ss_pred HHHHcCC--eEEEEcCCCchHHhHHHHHH
Q 002521 260 QAIARNQ--VIVISGETGCGKTTQLPQYI 286 (913)
Q Consensus 260 ~~i~~~~--~vII~apTGSGKTt~~~~~i 286 (913)
.++..++ ..|+.||+|+||||.+-+..
T Consensus 41 r~v~~~~l~SmIl~GPPG~GKTTlA~liA 69 (436)
T COG2256 41 RAVEAGHLHSMILWGPPGTGKTTLARLIA 69 (436)
T ss_pred HHHhcCCCceeEEECCCCCCHHHHHHHHH
Confidence 4455444 78999999999999876544
No 297
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.28 E-value=0.24 Score=59.13 Aligned_cols=49 Identities=18% Similarity=0.200 Sum_probs=28.2
Q ss_pred HHHHhcCCCCCCceEEEeccccccCcchHHHHHHHHHhCccCccceEEEec
Q 002521 355 LRRLLSDHNLNGVTHVFVDEIHERGMNEDFLLIVLKDLLPRRRDLRLILMS 405 (913)
Q Consensus 355 l~~l~~~~~L~~~s~IIIDEaHer~~~~d~ll~llk~ll~~~~~~kiIlmS 405 (913)
+..+...+....+.++||||+|..+. .-...+++.+-...+...+|+.+
T Consensus 108 ~~~~~~~p~~~~~kVvIIDEad~ls~--~a~naLLK~LEepp~~~~fIL~t 156 (527)
T PRK14969 108 LDNAQYAPTRGRFKVYIIDEVHMLSK--SAFNAMLKTLEEPPEHVKFILAT 156 (527)
T ss_pred HHHHhhCcccCCceEEEEcCcccCCH--HHHHHHHHHHhCCCCCEEEEEEe
Confidence 33334445667899999999996543 22334444443333445555544
No 298
>CHL00181 cbbX CbbX; Provisional
Probab=94.24 E-value=0.15 Score=56.01 Aligned_cols=23 Identities=26% Similarity=0.293 Sum_probs=18.7
Q ss_pred CCeEEEEcCCCchHHhHHHHHHH
Q 002521 265 NQVIVISGETGCGKTTQLPQYIL 287 (913)
Q Consensus 265 ~~~vII~apTGSGKTt~~~~~il 287 (913)
+-++++.||+|+|||+.+-....
T Consensus 59 ~~~ill~G~pGtGKT~lAr~la~ 81 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKMAD 81 (287)
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999998876543
No 299
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.23 E-value=0.21 Score=58.08 Aligned_cols=70 Identities=24% Similarity=0.260 Sum_probs=43.6
Q ss_pred CCCceEEEEecHHHHHHHhcCC-------CCCCceEE-EeccccccCcc-----hHH------HHHHHHHhCccCccceE
Q 002521 341 GKNTHLLFCTSGILLRRLLSDH-------NLNGVTHV-FVDEIHERGMN-----EDF------LLIVLKDLLPRRRDLRL 401 (913)
Q Consensus 341 ~~~~~Ivv~T~g~Ll~~l~~~~-------~L~~~s~I-IIDEaHer~~~-----~d~------ll~llk~ll~~~~~~ki 401 (913)
+....|.|+|.+.|...+.... .|.+..+| +-||+|+.... .|- +...++-.+..+++--+
T Consensus 79 nd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~v~la~~~nkd~~~ 158 (812)
T COG3421 79 NDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESVVKLALEQNKDNLL 158 (812)
T ss_pred CCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHHHHHHHhcCCCcee
Confidence 3557899999999987775432 45555554 56999953111 111 12233444556677668
Q ss_pred EEeccccCH
Q 002521 402 ILMSATLNA 410 (913)
Q Consensus 402 IlmSATl~~ 410 (913)
+.+|||.+.
T Consensus 159 lef~at~~k 167 (812)
T COG3421 159 LEFSATIPK 167 (812)
T ss_pred ehhhhcCCc
Confidence 889999863
No 300
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=94.22 E-value=0.088 Score=64.83 Aligned_cols=107 Identities=16% Similarity=0.144 Sum_probs=68.1
Q ss_pred cHHHHHHHHHHHHcCCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHHHHHhCCCcccEe
Q 002521 251 SFKEKERLLQAIARNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVSAERGEPLGETV 330 (913)
Q Consensus 251 ~~~~q~~il~~i~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv~~~~~~~~g~~v 330 (913)
+.+.|.+++.. .+..++|.|..|||||+.+..-+...+...+ -...+|++++.|+.+|..+.+|+...++..
T Consensus 3 Ln~~Q~~av~~--~~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~-v~p~~IL~lTFT~kAA~em~~Rl~~~l~~~----- 74 (672)
T PRK10919 3 LNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCG-YQARHIAAVTFTNKAAREMKERVAQTLGRK----- 74 (672)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcC-CCHHHeeeEechHHHHHHHHHHHHHHhCcc-----
Confidence 34567776665 3456778899999999888776665443222 234579999999999999999998765421
Q ss_pred eeEEeccccCCCCceEEEEecHHHHHHHhcCC--CCC-CceEEEecccc
Q 002521 331 GYKVRLEGMKGKNTHLLFCTSGILLRRLLSDH--NLN-GVTHVFVDEIH 376 (913)
Q Consensus 331 Gy~v~~e~~~~~~~~Ivv~T~g~Ll~~l~~~~--~L~-~~s~IIIDEaH 376 (913)
....+.|+|--.+...+.... .+. .-++-|+|+.+
T Consensus 75 -----------~~~~v~i~TfHS~~~~iLr~~~~~~g~~~~~~i~d~~~ 112 (672)
T PRK10919 75 -----------EARGLMISTFHTLGLDIIKREYAALGMKSNFSLFDDTD 112 (672)
T ss_pred -----------cccCcEEEcHHHHHHHHHHHHHHHhCCCCCCeeCCHHH
Confidence 012477899765543332211 111 12355778765
No 301
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=94.19 E-value=0.36 Score=65.92 Aligned_cols=138 Identities=16% Similarity=0.206 Sum_probs=77.0
Q ss_pred CCCcHHHHHHHHHHHHcC--CeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHHHHHhCCC
Q 002521 248 SLPSFKEKERLLQAIARN--QVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVSAERGEP 325 (913)
Q Consensus 248 ~lP~~~~q~~il~~i~~~--~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv~~~~~~~ 325 (913)
.+++..-|.+.+..+..+ ++.+|.|+.|+||||.+-.. .+.+ +. .| ..|+++.|+--.|..+.+.. |..
T Consensus 427 ~~~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~l~~l-~~~~-~~-~G--~~V~~lAPTgrAA~~L~e~~----g~~ 497 (1960)
T TIGR02760 427 EFALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEIAQLL-LHLA-SE-QG--YEIQIITAGSLSAQELRQKI----PRL 497 (1960)
T ss_pred cCCCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHHHHHH-HHHH-Hh-cC--CeEEEEeCCHHHHHHHHHHh----cch
Confidence 456677777777777654 79999999999999876543 3322 21 22 36777789988776655432 211
Q ss_pred cccEeeeEEeccccCCCCceEEEEecHHHHHHHhcCCCCCCceEEEeccccccCcchHHHHHHHHHhCccCccceEEEec
Q 002521 326 LGETVGYKVRLEGMKGKNTHLLFCTSGILLRRLLSDHNLNGVTHVFVDEIHERGMNEDFLLIVLKDLLPRRRDLRLILMS 405 (913)
Q Consensus 326 ~g~~vGy~v~~e~~~~~~~~Ivv~T~g~Ll~~l~~~~~L~~~s~IIIDEaHer~~~~d~ll~llk~ll~~~~~~kiIlmS 405 (913)
-.....+. ..... .....|...++ ..+..+..-++|||||+-. +....+..+++.... .+.|+|++.
T Consensus 498 A~Ti~~~l---~~l~~---~~~~~tv~~fl---~~~~~l~~~~vlIVDEAsM--l~~~~~~~Ll~~a~~--~garvVlvG 564 (1960)
T TIGR02760 498 ASTFITWV---KNLFN---DDQDHTVQGLL---DKSSPFSNKDIFVVDEANK--LSNNELLKLIDKAEQ--HNSKLILLN 564 (1960)
T ss_pred hhhHHHHH---Hhhcc---cccchhHHHhh---cccCCCCCCCEEEEECCCC--CCHHHHHHHHHHHhh--cCCEEEEEc
Confidence 00000000 00000 01122323333 2233566789999999993 344445555554433 346888776
Q ss_pred cc
Q 002521 406 AT 407 (913)
Q Consensus 406 AT 407 (913)
=+
T Consensus 565 D~ 566 (1960)
T TIGR02760 565 DS 566 (1960)
T ss_pred Ch
Confidence 54
No 302
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=94.11 E-value=0.17 Score=59.78 Aligned_cols=28 Identities=25% Similarity=0.325 Sum_probs=21.2
Q ss_pred HHHcCC---eEEEEcCCCchHHhHHHHHHHH
Q 002521 261 AIARNQ---VIVISGETGCGKTTQLPQYILE 288 (913)
Q Consensus 261 ~i~~~~---~vII~apTGSGKTt~~~~~ile 288 (913)
++..++ .++++||.|+||||.+-.+...
T Consensus 36 ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~ 66 (507)
T PRK06645 36 TILNDRLAGGYLLTGIRGVGKTTSARIIAKA 66 (507)
T ss_pred HHHcCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 344554 6899999999999988766543
No 303
>KOG2373 consensus Predicted mitochondrial DNA helicase twinkle [Replication, recombination and repair]
Probab=94.10 E-value=0.016 Score=62.76 Aligned_cols=134 Identities=19% Similarity=0.256 Sum_probs=71.2
Q ss_pred HHHHHHHHHcCCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHHHHHhC-CCcccEeeeE
Q 002521 255 KERLLQAIARNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVSAERG-EPLGETVGYK 333 (913)
Q Consensus 255 q~~il~~i~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv~~~~~-~~~g~~vGy~ 333 (913)
-..++.-...+.-.|+.|||||||||-+.-+.++.+...-+.-.|..=+ |..-||.-+-.+++..+- ..+...--|.
T Consensus 263 LNk~LkGhR~GElTvlTGpTGsGKTTFlsEYsLDL~~QGVnTLwgSFEi--~n~rla~~mL~Qyagyrl~drl~~y~HWa 340 (514)
T KOG2373|consen 263 LNKYLKGHRPGELTVLTGPTGSGKTTFLSEYSLDLFTQGVNTLWGSFEI--PNKRLAHWMLVQYAGYRLLDRLNSYKHWA 340 (514)
T ss_pred HHHHhccCCCCceEEEecCCCCCceeEehHhhHHHHhhhhhheeeeeec--chHHHHHHHHHHHccCchHhhhhhhhHHH
Confidence 4455556667789999999999999988888887664322222233333 544444433333321100 0000101122
Q ss_pred EeccccCCCCceEEEEec------HHHHHHHhcCCCCCCceEEEeccccc----------cCcchHHHHHHHHHhCcc
Q 002521 334 VRLEGMKGKNTHLLFCTS------GILLRRLLSDHNLNGVTHVFVDEIHE----------RGMNEDFLLIVLKDLLPR 395 (913)
Q Consensus 334 v~~e~~~~~~~~Ivv~T~------g~Ll~~l~~~~~L~~~s~IIIDEaHe----------r~~~~d~ll~llk~ll~~ 395 (913)
.+|+. ..+.++|- ...++.+.......++.|||||-.+- |-...|.+.+.++++...
T Consensus 341 drFEr-----lplyfmtfhgqq~~~~vi~~i~ha~yV~di~HViIDNLQFmmg~~~~~~Drf~~QD~iig~fR~fAT~ 413 (514)
T KOG2373|consen 341 DRFER-----LPLYFMTFHGQQFMEKVINEIAHAIYVEDIQHVIIDNLQFMMGQGMMALDRFHLQDRIIGYFRQFATQ 413 (514)
T ss_pred HHHhc-----cchHhhhhcccchHHHHHHHHHHHHHHHhhhhhhhhhHHHHhccchhccchhhhHHHHHHHHHHHhhc
Confidence 33333 23555552 23344444434566788999998871 223455566666655443
No 304
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=94.10 E-value=0.11 Score=54.34 Aligned_cols=21 Identities=29% Similarity=0.339 Sum_probs=16.7
Q ss_pred CeEEEEcCCCchHHhHHHHHH
Q 002521 266 QVIVISGETGCGKTTQLPQYI 286 (913)
Q Consensus 266 ~~vII~apTGSGKTt~~~~~i 286 (913)
..+++.||+|+||||.+-+..
T Consensus 51 ~h~lf~GPPG~GKTTLA~IIA 71 (233)
T PF05496_consen 51 DHMLFYGPPGLGKTTLARIIA 71 (233)
T ss_dssp -EEEEESSTTSSHHHHHHHHH
T ss_pred ceEEEECCCccchhHHHHHHH
Confidence 479999999999998775443
No 305
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=94.07 E-value=0.06 Score=66.72 Aligned_cols=114 Identities=18% Similarity=0.104 Sum_probs=65.8
Q ss_pred HHHHHHHcCCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHHHHHhCCCcccEeeeEEe-
Q 002521 257 RLLQAIARNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVSAERGEPLGETVGYKVR- 335 (913)
Q Consensus 257 ~il~~i~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv~~~~~~~~g~~vGy~v~- 335 (913)
+++-.+.=++--|..+.||=|||+++.++++-..+. |..+-| ||+. --||.-=++.+...+. -+|.+||....
T Consensus 143 QLiGgivLh~G~IAEM~TGEGKTLvatlp~yLnAL~---G~gVHv-VTvN-DYLA~RDaewm~p~y~-flGLtVg~i~~~ 216 (1025)
T PRK12900 143 QLIGGIVLHSGKISEMATGEGKTLVSTLPTFLNALT---GRGVHV-VTVN-DYLAQRDKEWMNPVFE-FHGLSVGVILNT 216 (1025)
T ss_pred HHhhhHHhhcCCccccCCCCCcchHhHHHHHHHHHc---CCCcEE-Eeec-hHhhhhhHHHHHHHHH-HhCCeeeeeCCC
Confidence 466666556666788999999999998888665543 333343 4333 3344332333322211 14445553321
Q ss_pred ---ccccCCCCceEEEEecHH-----HHHHHhcCC---CCCCceEEEecccc
Q 002521 336 ---LEGMKGKNTHLLFCTSGI-----LLRRLLSDH---NLNGVTHVFVDEIH 376 (913)
Q Consensus 336 ---~e~~~~~~~~Ivv~T~g~-----Ll~~l~~~~---~L~~~s~IIIDEaH 376 (913)
.+....-.++|+|+|..- |.+.+...+ ....+.+.|||||+
T Consensus 217 ~~~~~Rr~aY~~DItYgTn~EfGFDYLRDnma~~~~~~vqR~~~faIVDEvD 268 (1025)
T PRK12900 217 MRPEERREQYLCDITYGTNNEFGFDYLRDNMAGTPEEMVQRDFYFAIVDEVD 268 (1025)
T ss_pred CCHHHHHHhCCCcceecCCCccccccchhccccchhhhhccCCceEEEechh
Confidence 111223468999999843 333333222 45788999999999
No 306
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=94.02 E-value=0.19 Score=51.08 Aligned_cols=118 Identities=18% Similarity=0.242 Sum_probs=64.6
Q ss_pred CCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHHHHHhCCCcccEeeeEEeccccCCCCc
Q 002521 265 NQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVSAERGEPLGETVGYKVRLEGMKGKNT 344 (913)
Q Consensus 265 ~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv~~~~~~~~g~~vGy~v~~e~~~~~~~ 344 (913)
++..+++||-.||||+-+++-+..... .| .++++..|... .|+.. ..+....| ....
T Consensus 4 g~l~~i~gpM~SGKT~eLl~r~~~~~~---~g--~~v~vfkp~iD------~R~~~---~~V~Sr~G---------~~~~ 60 (201)
T COG1435 4 GWLEFIYGPMFSGKTEELLRRARRYKE---AG--MKVLVFKPAID------TRYGV---GKVSSRIG---------LSSE 60 (201)
T ss_pred EEEEEEEccCcCcchHHHHHHHHHHHH---cC--CeEEEEecccc------ccccc---ceeeeccC---------Cccc
Confidence 456789999999999987776655432 12 24555445311 11100 00111111 1123
Q ss_pred eEEEEecHHHHHHHhcCCCCCCceEEEeccccccCcchHHHHHHHHHhCccCccceEEEeccccCHH
Q 002521 345 HLLFCTSGILLRRLLSDHNLNGVTHVFVDEIHERGMNEDFLLIVLKDLLPRRRDLRLILMSATLNAE 411 (913)
Q Consensus 345 ~Ivv~T~g~Ll~~l~~~~~L~~~s~IIIDEaHer~~~~d~ll~llk~ll~~~~~~kiIlmSATl~~~ 411 (913)
-++|-.+.-++..+........+++|.||||+ +..+-+...+.++.... -+-.+-+.++.+
T Consensus 61 A~~i~~~~~i~~~i~~~~~~~~~~~v~IDEaQ---F~~~~~v~~l~~lad~l---gi~Vi~~GL~~D 121 (201)
T COG1435 61 AVVIPSDTDIFDEIAALHEKPPVDCVLIDEAQ---FFDEELVYVLNELADRL---GIPVICYGLDTD 121 (201)
T ss_pred ceecCChHHHHHHHHhcccCCCcCEEEEehhH---hCCHHHHHHHHHHHhhc---CCEEEEeccccc
Confidence 45566777777777655444448999999999 44444444455544421 234445566544
No 307
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=94.02 E-value=0.2 Score=59.34 Aligned_cols=33 Identities=27% Similarity=0.391 Sum_probs=23.2
Q ss_pred HHHHHHHHcCC---eEEEEcCCCchHHhHHHHHHHH
Q 002521 256 ERLLQAIARNQ---VIVISGETGCGKTTQLPQYILE 288 (913)
Q Consensus 256 ~~il~~i~~~~---~vII~apTGSGKTt~~~~~ile 288 (913)
+.+...+..++ ..+++||.|+|||+.+-.++..
T Consensus 24 ~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~ 59 (535)
T PRK08451 24 KTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARA 59 (535)
T ss_pred HHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHH
Confidence 34445555554 3489999999999988765543
No 308
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.97 E-value=0.27 Score=59.13 Aligned_cols=32 Identities=31% Similarity=0.381 Sum_probs=22.9
Q ss_pred HHHHHHHcCC---eEEEEcCCCchHHhHHHHHHHH
Q 002521 257 RLLQAIARNQ---VIVISGETGCGKTTQLPQYILE 288 (913)
Q Consensus 257 ~il~~i~~~~---~vII~apTGSGKTt~~~~~ile 288 (913)
.+..++.+++ .++++||.|+|||+.+-.+...
T Consensus 27 ~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~ 61 (624)
T PRK14959 27 ILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKA 61 (624)
T ss_pred HHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHh
Confidence 3444455543 5889999999999988766543
No 309
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=93.92 E-value=0.1 Score=60.76 Aligned_cols=64 Identities=19% Similarity=0.293 Sum_probs=43.1
Q ss_pred HHHHHHHHHHcCCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceE-EEEcchhHHHHHHHHHHH
Q 002521 254 EKERLLQAIARNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCN-IICTQPRRISAMAVSERV 318 (913)
Q Consensus 254 ~q~~il~~i~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~-Ilv~qPrr~La~qva~rv 318 (913)
-|.+|+.. ..+..+||.|..||||||+++.=+.-.+.........+ |+++.|.+....-++..+
T Consensus 216 EQneIIR~-ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~vlvl~PN~vFleYis~VL 280 (747)
T COG3973 216 EQNEIIRF-EKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPVLVLGPNRVFLEYISRVL 280 (747)
T ss_pred hHHHHHhc-cCCCeEEEecCCCCCchhHHHHHHHHHHhccccccccCceEEEcCcHHHHHHHHHhc
Confidence 35666554 46789999999999999999876554443322111122 677779999987665544
No 310
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=93.89 E-value=0.15 Score=55.17 Aligned_cols=40 Identities=23% Similarity=0.351 Sum_probs=30.1
Q ss_pred HcCCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcc
Q 002521 263 ARNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQ 305 (913)
Q Consensus 263 ~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~q 305 (913)
..+..++|+|++|+|||+.+.+++.+.+. +|..+.++-+.
T Consensus 34 p~gs~~lI~G~pGtGKT~l~~qf~~~~a~---~Ge~vlyis~E 73 (259)
T TIGR03878 34 PAYSVINITGVSDTGKSLMVEQFAVTQAS---RGNPVLFVTVE 73 (259)
T ss_pred ECCcEEEEEcCCCCCHHHHHHHHHHHHHh---CCCcEEEEEec
Confidence 36789999999999999999999887552 34455555544
No 311
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=93.85 E-value=0.12 Score=57.70 Aligned_cols=37 Identities=19% Similarity=0.300 Sum_probs=26.1
Q ss_pred cHHHHHHHHHHHHcCC----eEEEEcCCCchHHhHHHHHHH
Q 002521 251 SFKEKERLLQAIARNQ----VIVISGETGCGKTTQLPQYIL 287 (913)
Q Consensus 251 ~~~~q~~il~~i~~~~----~vII~apTGSGKTt~~~~~il 287 (913)
+|+.+...+..+...+ -.+++||.|+|||+.+..+..
T Consensus 4 ~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~A~ 44 (328)
T PRK05707 4 IYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAERLAA 44 (328)
T ss_pred CCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHHHHH
Confidence 3555666666665433 578999999999988776554
No 312
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=93.83 E-value=0.13 Score=54.69 Aligned_cols=41 Identities=22% Similarity=0.293 Sum_probs=29.2
Q ss_pred HHcCCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcc
Q 002521 262 IARNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQ 305 (913)
Q Consensus 262 i~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~q 305 (913)
+..+..+++.|++|||||+.+.+++...+ .++..+..+.+.
T Consensus 21 i~~g~~~~i~G~~G~GKTtl~~~~~~~~~---~~g~~~~yi~~e 61 (230)
T PRK08533 21 IPAGSLILIEGDESTGKSILSQRLAYGFL---QNGYSVSYVSTQ 61 (230)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHH---hCCCcEEEEeCC
Confidence 34678999999999999999888887643 233444444433
No 313
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=93.81 E-value=0.12 Score=57.59 Aligned_cols=53 Identities=21% Similarity=0.334 Sum_probs=35.2
Q ss_pred HHHHHHHHHcCCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHH
Q 002521 255 KERLLQAIARNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRIS 310 (913)
Q Consensus 255 q~~il~~i~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~L 310 (913)
.+.+..++..+.+++|+|+|||||||.+-. ++..... ..+..+|+++..+.++
T Consensus 138 ~~~L~~~v~~~~~ilI~G~tGSGKTTll~a-L~~~~~~--~~~~~rivtIEd~~El 190 (319)
T PRK13894 138 REAIIAAVRAHRNILVIGGTGSGKTTLVNA-IINEMVI--QDPTERVFIIEDTGEI 190 (319)
T ss_pred HHHHHHHHHcCCeEEEECCCCCCHHHHHHH-HHHhhhh--cCCCceEEEEcCCCcc
Confidence 344555678889999999999999986643 3333221 1234577777776655
No 314
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=93.80 E-value=0.22 Score=60.71 Aligned_cols=31 Identities=29% Similarity=0.395 Sum_probs=22.3
Q ss_pred HHHHHHHcCC---eEEEEcCCCchHHhHHHHHHH
Q 002521 257 RLLQAIARNQ---VIVISGETGCGKTTQLPQYIL 287 (913)
Q Consensus 257 ~il~~i~~~~---~vII~apTGSGKTt~~~~~il 287 (913)
.+..++..++ ..+++||.|+|||+.+-.+.-
T Consensus 29 ~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk 62 (725)
T PRK07133 29 TLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFAN 62 (725)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHH
Confidence 3455555553 468999999999998876543
No 315
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=93.72 E-value=0.82 Score=50.44 Aligned_cols=28 Identities=29% Similarity=0.382 Sum_probs=21.1
Q ss_pred HHHHHcCC--eEEEEcCCCchHHhHHHHHH
Q 002521 259 LQAIARNQ--VIVISGETGCGKTTQLPQYI 286 (913)
Q Consensus 259 l~~i~~~~--~vII~apTGSGKTt~~~~~i 286 (913)
...|.+|+ .+|+.||.|+|||+.+-+.+
T Consensus 154 rs~ieq~~ipSmIlWGppG~GKTtlArlia 183 (554)
T KOG2028|consen 154 RSLIEQNRIPSMILWGPPGTGKTTLARLIA 183 (554)
T ss_pred HHHHHcCCCCceEEecCCCCchHHHHHHHH
Confidence 34455554 78999999999999776554
No 316
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=93.70 E-value=0.19 Score=55.93 Aligned_cols=52 Identities=27% Similarity=0.271 Sum_probs=29.2
Q ss_pred HHHHHHHhcCCCCCCceEEEeccccccCcchHHHHHHHHHhCccCccceEEEec
Q 002521 352 GILLRRLLSDHNLNGVTHVFVDEIHERGMNEDFLLIVLKDLLPRRRDLRLILMS 405 (913)
Q Consensus 352 g~Ll~~l~~~~~L~~~s~IIIDEaHer~~~~d~ll~llk~ll~~~~~~kiIlmS 405 (913)
..+.+.....+....+.+||||||+.+ ..|-.-.+++.+-....+..+|+.+
T Consensus 95 r~~~~~~~~~~~~~~~kviiidead~m--t~~A~nallk~lEep~~~~~~il~~ 146 (325)
T COG0470 95 RELAEFLSESPLEGGYKVVIIDEADKL--TEDAANALLKTLEEPPKNTRFILIT 146 (325)
T ss_pred HHHHHHhccCCCCCCceEEEeCcHHHH--hHHHHHHHHHHhccCCCCeEEEEEc
Confidence 333333333344578999999999954 3344555554444444444444444
No 317
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=93.63 E-value=0.7 Score=53.98 Aligned_cols=38 Identities=21% Similarity=0.249 Sum_probs=23.7
Q ss_pred CeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcch
Q 002521 266 QVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQP 306 (913)
Q Consensus 266 ~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qP 306 (913)
+.+++.||+|+|||..+- .+...+.... +..+++++..
T Consensus 131 n~l~lyG~~G~GKTHLl~-ai~~~l~~~~--~~~~v~yi~~ 168 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQ-SIGNYVVQNE--PDLRVMYITS 168 (440)
T ss_pred CeEEEEcCCCCcHHHHHH-HHHHHHHHhC--CCCeEEEEEH
Confidence 358999999999997664 3333333322 2346666543
No 318
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=93.61 E-value=0.093 Score=58.93 Aligned_cols=49 Identities=18% Similarity=0.212 Sum_probs=33.4
Q ss_pred HHHHHHHcCCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHH
Q 002521 257 RLLQAIARNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISA 311 (913)
Q Consensus 257 ~il~~i~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La 311 (913)
-+..++..+.+++|+|+|||||||.+-. ++..+ ....+|+.+..+.++.
T Consensus 154 ~l~~~v~~~~nilI~G~tGSGKTTll~a-Ll~~i-----~~~~rivtiEd~~El~ 202 (344)
T PRK13851 154 FLHACVVGRLTMLLCGPTGSGKTTMSKT-LISAI-----PPQERLITIEDTLELV 202 (344)
T ss_pred HHHHHHHcCCeEEEECCCCccHHHHHHH-HHccc-----CCCCCEEEECCCcccc
Confidence 3444567788999999999999987643 33322 2234677777776653
No 319
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=93.47 E-value=0.22 Score=58.04 Aligned_cols=20 Identities=30% Similarity=0.419 Sum_probs=15.9
Q ss_pred CeEEEEcCCCchHHhHHHHH
Q 002521 266 QVIVISGETGCGKTTQLPQY 285 (913)
Q Consensus 266 ~~vII~apTGSGKTt~~~~~ 285 (913)
+.+++.||+|+|||+.+-.+
T Consensus 142 npl~L~G~~G~GKTHLl~Ai 161 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAA 161 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHH
Confidence 45889999999999765533
No 320
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=93.40 E-value=0.43 Score=53.09 Aligned_cols=30 Identities=20% Similarity=0.308 Sum_probs=19.4
Q ss_pred HHHHHHHcCC---eEEEEcCCCchHHhHHHHHH
Q 002521 257 RLLQAIARNQ---VIVISGETGCGKTTQLPQYI 286 (913)
Q Consensus 257 ~il~~i~~~~---~vII~apTGSGKTt~~~~~i 286 (913)
.+...+..++ .+++.||+|+|||+.+-.+.
T Consensus 32 ~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~ 64 (316)
T PHA02544 32 TFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALC 64 (316)
T ss_pred HHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHH
Confidence 3444444443 45559999999998765543
No 321
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=93.31 E-value=0.75 Score=51.03 Aligned_cols=20 Identities=30% Similarity=0.453 Sum_probs=16.8
Q ss_pred eEEEEcCCCchHHhHHHHHH
Q 002521 267 VIVISGETGCGKTTQLPQYI 286 (913)
Q Consensus 267 ~vII~apTGSGKTt~~~~~i 286 (913)
.+++.||+|+|||+.+-.+.
T Consensus 40 ~~ll~G~~G~GKt~~~~~l~ 59 (319)
T PRK00440 40 HLLFAGPPGTGKTTAALALA 59 (319)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 58999999999998776544
No 322
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=93.30 E-value=0.21 Score=59.65 Aligned_cols=31 Identities=32% Similarity=0.454 Sum_probs=22.2
Q ss_pred HHHHHHHcC---CeEEEEcCCCchHHhHHHHHHH
Q 002521 257 RLLQAIARN---QVIVISGETGCGKTTQLPQYIL 287 (913)
Q Consensus 257 ~il~~i~~~---~~vII~apTGSGKTt~~~~~il 287 (913)
.+..++..+ +.++++||.|+|||+.+-.+..
T Consensus 27 ~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk 60 (605)
T PRK05896 27 ILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAK 60 (605)
T ss_pred HHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 344455454 3578999999999998876553
No 323
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.25 E-value=0.12 Score=59.64 Aligned_cols=31 Identities=23% Similarity=0.336 Sum_probs=22.4
Q ss_pred HHHHHHcCC---eEEEEcCCCchHHhHHHHHHHH
Q 002521 258 LLQAIARNQ---VIVISGETGCGKTTQLPQYILE 288 (913)
Q Consensus 258 il~~i~~~~---~vII~apTGSGKTt~~~~~ile 288 (913)
+..++.+++ .++++||.|+||||.+-.+.-.
T Consensus 28 L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~ 61 (397)
T PRK14955 28 IQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKA 61 (397)
T ss_pred HHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHH
Confidence 444555553 4889999999999988766543
No 324
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=93.23 E-value=0.12 Score=54.00 Aligned_cols=31 Identities=35% Similarity=0.630 Sum_probs=22.3
Q ss_pred HHHHHHHHc--CCeEEEEcCCCchHHhHHHHHH
Q 002521 256 ERLLQAIAR--NQVIVISGETGCGKTTQLPQYI 286 (913)
Q Consensus 256 ~~il~~i~~--~~~vII~apTGSGKTt~~~~~i 286 (913)
+++.+.+.. ++.++|.||-|+|||+.+-.++
T Consensus 9 ~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~ 41 (234)
T PF01637_consen 9 EKLKELLESGPSQHILLYGPRGSGKTSLLKEFI 41 (234)
T ss_dssp HHHHHCHHH--SSEEEEEESTTSSHHHHHHHHH
T ss_pred HHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHH
Confidence 445555555 4799999999999998554433
No 325
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.20 E-value=0.44 Score=57.61 Aligned_cols=33 Identities=24% Similarity=0.369 Sum_probs=23.5
Q ss_pred HHHHHHHHcCC---eEEEEcCCCchHHhHHHHHHHH
Q 002521 256 ERLLQAIARNQ---VIVISGETGCGKTTQLPQYILE 288 (913)
Q Consensus 256 ~~il~~i~~~~---~vII~apTGSGKTt~~~~~ile 288 (913)
..+..++..++ ..+++||.|+|||+.+-.+...
T Consensus 26 ~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~ 61 (576)
T PRK14965 26 RTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKA 61 (576)
T ss_pred HHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 34455555654 4689999999999988765543
No 326
>PRK09087 hypothetical protein; Validated
Probab=93.14 E-value=0.51 Score=49.94 Aligned_cols=20 Identities=35% Similarity=0.584 Sum_probs=16.4
Q ss_pred CCeEEEEcCCCchHHhHHHH
Q 002521 265 NQVIVISGETGCGKTTQLPQ 284 (913)
Q Consensus 265 ~~~vII~apTGSGKTt~~~~ 284 (913)
++.+++.||+|||||+.+-.
T Consensus 44 ~~~l~l~G~~GsGKThLl~~ 63 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASI 63 (226)
T ss_pred CCeEEEECCCCCCHHHHHHH
Confidence 45689999999999986653
No 327
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=93.12 E-value=0.19 Score=62.08 Aligned_cols=106 Identities=18% Similarity=0.157 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHcCCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHHHHHhCCCcccEee
Q 002521 252 FKEKERLLQAIARNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVSAERGEPLGETVG 331 (913)
Q Consensus 252 ~~~q~~il~~i~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv~~~~~~~~g~~vG 331 (913)
.+.|.+++.. ....++|.|..|||||+.+..-+...+...+. ....|+++..|+.+|.++-+|+.+.++..
T Consensus 3 n~~Q~~av~~--~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~-~p~~IL~vTFt~~Aa~em~~Rl~~~l~~~------ 73 (664)
T TIGR01074 3 NPQQQEAVEY--VTGPCLVLAGAGSGKTRVITNKIAYLIQNCGY-KARNIAAVTFTNKAAREMKERVAKTLGKG------ 73 (664)
T ss_pred CHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCC-CHHHeEEEeccHHHHHHHHHHHHHHhCcc------
Confidence 3456666654 45678899999999999888777665532222 34578888899999999999998755421
Q ss_pred eEEeccccCCCCceEEEEecHHHHHHHhcCC--CCC-CceEEEecccc
Q 002521 332 YKVRLEGMKGKNTHLLFCTSGILLRRLLSDH--NLN-GVTHVFVDEIH 376 (913)
Q Consensus 332 y~v~~e~~~~~~~~Ivv~T~g~Ll~~l~~~~--~L~-~~s~IIIDEaH 376 (913)
....+.|.|-..|...+.... .+. .-.+-|+|+..
T Consensus 74 ----------~~~~v~v~TfHs~a~~il~~~~~~~g~~~~~~il~~~~ 111 (664)
T TIGR01074 74 ----------EARGLTISTFHTLGLDIIKREYNALGYKSNFSLFDETD 111 (664)
T ss_pred ----------ccCCeEEEeHHHHHHHHHHHHHHHhCCCCCCEEeCHHH
Confidence 123578889766654443221 000 12245788876
No 328
>PTZ00293 thymidine kinase; Provisional
Probab=93.10 E-value=0.37 Score=50.05 Aligned_cols=27 Identities=33% Similarity=0.378 Sum_probs=22.0
Q ss_pred cCCeEEEEcCCCchHHhHHHHHHHHHH
Q 002521 264 RNQVIVISGETGCGKTTQLPQYILESE 290 (913)
Q Consensus 264 ~~~~vII~apTGSGKTt~~~~~ile~~ 290 (913)
.|...++.||.+||||+.++..+....
T Consensus 3 ~G~i~vi~GpMfSGKTteLLr~i~~y~ 29 (211)
T PTZ00293 3 RGTISVIIGPMFSGKTTELMRLVKRFT 29 (211)
T ss_pred ceEEEEEECCCCChHHHHHHHHHHHHH
Confidence 466788999999999998888776544
No 329
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=93.04 E-value=0.052 Score=57.35 Aligned_cols=20 Identities=35% Similarity=0.640 Sum_probs=16.2
Q ss_pred EEEEcCCCchHHhHHHHHHH
Q 002521 268 IVISGETGCGKTTQLPQYIL 287 (913)
Q Consensus 268 vII~apTGSGKTt~~~~~il 287 (913)
++|.|+.|||||+.+...+-
T Consensus 1 ~vv~G~pGsGKSt~i~~~~~ 20 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKLLK 20 (234)
T ss_pred CEEEcCCCCCHHHHHHHHHH
Confidence 47899999999997766554
No 330
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=93.02 E-value=0.94 Score=54.26 Aligned_cols=161 Identities=19% Similarity=0.208 Sum_probs=91.0
Q ss_pred hHHhhhcCCCcHHHHHHHHHHHHcCCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHHHH
Q 002521 241 KMLDFRKSLPSFKEKERLLQAIARNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVSA 320 (913)
Q Consensus 241 ~l~~~r~~lP~~~~q~~il~~i~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv~~ 320 (913)
.+++.-+.+|.+. +++++...+ +-.++..|==.|||..+. +++-.++..-. ..+|+++.|.+..+..+.+++..
T Consensus 233 ~~lk~~Fdi~~~s--~~~~~~fkq-k~tVflVPRR~GKTwivv-~iI~~ll~s~~--Gi~IgytAH~~~ts~~vF~eI~~ 306 (738)
T PHA03368 233 RFLRTVFNTPLFS--DAAVRHFRQ-RATVFLVPRRHGKTWFLV-PLIALALATFR--GIKIGYTAHIRKATEPVFEEIGA 306 (738)
T ss_pred HHHHHHcCCcccc--HHHHHHhhc-cceEEEecccCCchhhHH-HHHHHHHHhCC--CCEEEEEcCcHHHHHHHHHHHHH
Confidence 3444445555543 456666544 455556699999998666 33333332222 35899999999999999999877
Q ss_pred HhCCCcc-cEe----e--eEEeccccCCCCceEEEEecHHHHHHHhcCCCCCCceEEEeccccccCcchHHHHHHHHHhC
Q 002521 321 ERGEPLG-ETV----G--YKVRLEGMKGKNTHLLFCTSGILLRRLLSDHNLNGVTHVFVDEIHERGMNEDFLLIVLKDLL 393 (913)
Q Consensus 321 ~~~~~~g-~~v----G--y~v~~e~~~~~~~~Ivv~T~g~Ll~~l~~~~~L~~~s~IIIDEaHer~~~~d~ll~llk~ll 393 (913)
.+....+ ..+ | +...+.+ .....|.|.+.. + .+...=.+++++|||||+.- ..+.+..++-.+.
T Consensus 307 ~le~~f~~~~v~~vkGe~I~i~f~n--G~kstI~FaSar---n--tNsiRGqtfDLLIVDEAqFI--k~~al~~ilp~l~ 377 (738)
T PHA03368 307 RLRQWFGASRVDHVKGETISFSFPD--GSRSTIVFASSH---N--TNGIRGQDFNLLFVDEANFI--RPDAVQTIMGFLN 377 (738)
T ss_pred HHhhhcchhheeeecCcEEEEEecC--CCccEEEEEecc---C--CCCccCCcccEEEEechhhC--CHHHHHHHHHHHh
Confidence 4331111 111 1 1111111 122366666431 0 00012247899999999943 3344445543333
Q ss_pred ccCccceEEEeccccCHHHHHhhhC
Q 002521 394 PRRRDLRLILMSATLNAELFSNYFG 418 (913)
Q Consensus 394 ~~~~~~kiIlmSATl~~~~~~~yf~ 418 (913)
.. +.++|.+|.|-+.+.-.+|+.
T Consensus 378 ~~--n~k~I~ISS~Ns~~~sTSFL~ 400 (738)
T PHA03368 378 QT--NCKIIFVSSTNTGKASTSFLY 400 (738)
T ss_pred cc--CccEEEEecCCCCccchHHHH
Confidence 33 669999999976655445543
No 331
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=93.02 E-value=0.63 Score=53.64 Aligned_cols=134 Identities=13% Similarity=0.136 Sum_probs=73.0
Q ss_pred CeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHH-HHHHHHHHHHHHhCCCcccEeeeEEecc--c--cC
Q 002521 266 QVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRI-SAMAVSERVSAERGEPLGETVGYKVRLE--G--MK 340 (913)
Q Consensus 266 ~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~-La~qva~rv~~~~~~~~g~~vGy~v~~e--~--~~ 340 (913)
+..++.|..|||||..+.+.++..++... +..+++|+-|+.. +...+...+...... +|...-+..... . ..
T Consensus 2 ~~~i~~GgrgSGKS~~~~~~~~~~~~~~~--~~~~~~~~r~~~~sl~~sv~~~l~~~i~~-~g~~~~~~~~~~~~~i~~~ 78 (396)
T TIGR01547 2 EEIIAKGGRRSGKTFAIALKLVEKLAINK--KQQNILAARKVQNSIRDSVFKDIENLLSI-EGINYEFKKSKSSMEIKIL 78 (396)
T ss_pred ceEEEeCCCCcccHHHHHHHHHHHHHhcC--CCcEEEEEehhhhHHHHHHHHHHHHHHHH-cCChhheeecCCccEEEec
Confidence 45788999999999888888777776541 3467888877766 566666666543321 121111111100 0 01
Q ss_pred CCCceEEEEec-HHHHHHHhcCCCCCCceEEEeccccccCcchHHHHHHHHHhCccCccceEEEeccccC
Q 002521 341 GKNTHLLFCTS-GILLRRLLSDHNLNGVTHVFVDEIHERGMNEDFLLIVLKDLLPRRRDLRLILMSATLN 409 (913)
Q Consensus 341 ~~~~~Ivv~T~-g~Ll~~l~~~~~L~~~s~IIIDEaHer~~~~d~ll~llk~ll~~~~~~kiIlmSATl~ 409 (913)
+.+..|+|..- +.--+ +. ....+..+.+|||.+.+ .+....++.++ +.......|++|.|+.
T Consensus 79 ~~g~~i~f~g~~d~~~~-ik---~~~~~~~~~idEa~~~~--~~~~~~l~~rl-r~~~~~~~i~~t~NP~ 141 (396)
T TIGR01547 79 NTGKKFIFKGLNDKPNK-LK---SGAGIAIIWFEEASQLT--FEDIKELIPRL-RETGGKKFIIFSSNPE 141 (396)
T ss_pred CCCeEEEeecccCChhH-hh---CcceeeeehhhhhhhcC--HHHHHHHHHHh-hccCCccEEEEEcCcC
Confidence 11344555443 11111 11 33447999999999763 33444444343 2112212478888884
No 332
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=93.00 E-value=0.26 Score=58.22 Aligned_cols=135 Identities=19% Similarity=0.209 Sum_probs=74.1
Q ss_pred eEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHHHHHhCCC--cccEeeeEEeccccCCCCc
Q 002521 267 VIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVSAERGEP--LGETVGYKVRLEGMKGKNT 344 (913)
Q Consensus 267 ~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv~~~~~~~--~g~~vGy~v~~e~~~~~~~ 344 (913)
.+++.-|=|.|||+.+....+-.++..+ .....|+++.+++.-|..+.+.+....... +....+..+ ......
T Consensus 24 ~~~l~v~RkNGKS~l~a~i~ly~l~~~g-~~~~~i~~~A~~~~QA~~~f~~~~~~i~~~~~l~~~~~~~~----~~~~~~ 98 (477)
T PF03354_consen 24 EVYLEVPRKNGKSTLAAAIALYMLFLDG-EPGAEIYCAANTRDQAKIVFDEAKKMIEASPELRKRKKPKI----IKSNKK 98 (477)
T ss_pred EEEEEEcCccCccHHHHHHHHHHHhcCC-ccCceEEEEeCCHHHHHHHHHHHHHHHHhChhhccchhhhh----hhhhce
Confidence 4666669999999776655554443222 233578999999999999998887754331 111111000 011112
Q ss_pred eEEEEecHHHHHHHhcCC---CCCCceEEEeccccccCcchHHHHHHHHHhCccCccceEE-Eecccc
Q 002521 345 HLLFCTSGILLRRLLSDH---NLNGVTHVFVDEIHERGMNEDFLLIVLKDLLPRRRDLRLI-LMSATL 408 (913)
Q Consensus 345 ~Ivv~T~g~Ll~~l~~~~---~L~~~s~IIIDEaHer~~~~d~ll~llk~ll~~~~~~kiI-lmSATl 408 (913)
.|.+-.++.+++.+..+. .=.+.+++|+||+|+.. +.+ +...++.-...+++..++ +.||..
T Consensus 99 ~i~~~~~~s~~~~~s~~~~~~dG~~~~~~i~DE~h~~~-~~~-~~~~l~~g~~~r~~pl~~~ISTag~ 164 (477)
T PF03354_consen 99 EIEFPKTGSFFKALSSDADSLDGLNPSLAIFDELHAHK-DDE-LYDALESGMGARPNPLIIIISTAGD 164 (477)
T ss_pred EEEEcCCCcEEEEEecCCCCccCCCCceEEEeCCCCCC-CHH-HHHHHHhhhccCCCceEEEEeCCCC
Confidence 333333343333333332 12256899999999653 222 444455555556655544 445544
No 333
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=92.95 E-value=1.1 Score=59.26 Aligned_cols=62 Identities=18% Similarity=0.210 Sum_probs=41.9
Q ss_pred CcHHHHHHHHHHHHc--CCeEEEEcCCCchHHhHHHHHH--HHHHHHhCCCCceEEEEcchhHHHHHHH
Q 002521 250 PSFKEKERLLQAIAR--NQVIVISGETGCGKTTQLPQYI--LESEIESGRGAFCNIICTQPRRISAMAV 314 (913)
Q Consensus 250 P~~~~q~~il~~i~~--~~~vII~apTGSGKTt~~~~~i--le~~~~~~~~~~~~Ilv~qPrr~La~qv 314 (913)
.+..-|.+.+..+.. ++.++|.|..|+||||.+-..+ +..+.+ .....|+.+.||--+|..+
T Consensus 835 ~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e---~~g~~V~glAPTgkAa~~L 900 (1623)
T PRK14712 835 KLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPE---SERPRVVGLGPTHRAVGEM 900 (1623)
T ss_pred ccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHHHHHHHHHHHHhh---ccCceEEEEechHHHHHHH
Confidence 566778888887774 5899999999999998854322 222211 1223577778998877655
No 334
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=92.94 E-value=0.13 Score=63.98 Aligned_cols=114 Identities=18% Similarity=0.117 Sum_probs=65.7
Q ss_pred HHHHHHHcCCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHHHHHhCCCcccEeeeEEe-
Q 002521 257 RLLQAIARNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVSAERGEPLGETVGYKVR- 335 (913)
Q Consensus 257 ~il~~i~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv~~~~~~~~g~~vGy~v~- 335 (913)
+++-.+.=++--|..+.||=|||+++.++++-..+. |..+.| || ..--||.-=++.+...+. -+|..||....
T Consensus 174 QliGgivLh~G~IAEM~TGEGKTLvAtlp~yLnAL~---GkgVHv-VT-VNDYLA~RDaewmgply~-fLGLsvg~i~~~ 247 (1112)
T PRK12901 174 QLIGGVVLHQGKIAEMATGEGKTLVATLPVYLNALT---GNGVHV-VT-VNDYLAKRDSEWMGPLYE-FHGLSVDCIDKH 247 (1112)
T ss_pred HHhhhhhhcCCceeeecCCCCchhHHHHHHHHHHHc---CCCcEE-EE-echhhhhccHHHHHHHHH-HhCCceeecCCC
Confidence 467776666767889999999999998888765543 333333 33 333344322333322111 13444443221
Q ss_pred ----ccccCCCCceEEEEecHH-----HHHHHhcCC---CCCCceEEEecccc
Q 002521 336 ----LEGMKGKNTHLLFCTSGI-----LLRRLLSDH---NLNGVTHVFVDEIH 376 (913)
Q Consensus 336 ----~e~~~~~~~~Ivv~T~g~-----Ll~~l~~~~---~L~~~s~IIIDEaH 376 (913)
.+....-.++|+|+|..- |.+.+..++ ....+.+.|||||+
T Consensus 248 ~~~~~~rr~aY~~DItYgTn~EfGFDYLRDnm~~~~~~~vqR~~~fAIVDEvD 300 (1112)
T PRK12901 248 QPNSEARRKAYNADITYGTNNEFGFDYLRDNMAHSPEDLVQRKHNYAIVDEVD 300 (1112)
T ss_pred CCCHHHHHHhCCCcceecCCCccccccchhccccchHhhhCcCCceeEeechh
Confidence 112222468999999743 333332222 45778999999999
No 335
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=92.93 E-value=0.87 Score=51.45 Aligned_cols=37 Identities=19% Similarity=0.231 Sum_probs=23.2
Q ss_pred HHHHHhcCCCCCCceEEEeccccccCcchHHHHHHHHHh
Q 002521 354 LLRRLLSDHNLNGVTHVFVDEIHERGMNEDFLLIVLKDL 392 (913)
Q Consensus 354 Ll~~l~~~~~L~~~s~IIIDEaHer~~~~d~ll~llk~l 392 (913)
+...+...+...+..+|||||+|..+ .+....+++.+
T Consensus 105 l~~~~~~~p~~~~~~vviidea~~l~--~~~~~~Ll~~l 141 (355)
T TIGR02397 105 ILDNVKYAPSSGKYKVYIIDEVHMLS--KSAFNALLKTL 141 (355)
T ss_pred HHHHHhcCcccCCceEEEEeChhhcC--HHHHHHHHHHH
Confidence 44555555677888999999999543 23333444444
No 336
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=92.83 E-value=0.2 Score=62.43 Aligned_cols=70 Identities=16% Similarity=0.131 Sum_probs=51.2
Q ss_pred cHHHHHHHHHHHHcCCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHHHHHhC
Q 002521 251 SFKEKERLLQAIARNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVSAERG 323 (913)
Q Consensus 251 ~~~~q~~il~~i~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv~~~~~ 323 (913)
+.+.|.+++.. ....++|.|..|||||+.+..-+...+ ....-..-.|++++-|+.+|.++.+|+.+..+
T Consensus 10 Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~vl~~Ria~Li-~~~~v~p~~IL~lTFT~kAA~Em~~Rl~~~~~ 79 (721)
T PRK11773 10 LNDKQREAVAA--PLGNMLVLAGAGSGKTRVLVHRIAWLM-QVENASPYSIMAVTFTNKAAAEMRHRIEQLLG 79 (721)
T ss_pred cCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHH-HcCCCChhHeEeeeccHHHHHHHHHHHHHHhc
Confidence 45667776664 345788889999999988776555433 22222345799999999999999999988654
No 337
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=92.82 E-value=0.31 Score=58.64 Aligned_cols=22 Identities=27% Similarity=0.451 Sum_probs=17.9
Q ss_pred CeEEEEcCCCchHHhHHHHHHH
Q 002521 266 QVIVISGETGCGKTTQLPQYIL 287 (913)
Q Consensus 266 ~~vII~apTGSGKTt~~~~~il 287 (913)
+..+++||.|+|||+.+-.+..
T Consensus 39 hayLf~Gp~GtGKTt~Ak~lAk 60 (559)
T PRK05563 39 HAYLFSGPRGTGKTSAAKIFAK 60 (559)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3578899999999998876653
No 338
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.79 E-value=0.38 Score=58.42 Aligned_cols=31 Identities=26% Similarity=0.360 Sum_probs=22.0
Q ss_pred HHHHHHcC---CeEEEEcCCCchHHhHHHHHHHH
Q 002521 258 LLQAIARN---QVIVISGETGCGKTTQLPQYILE 288 (913)
Q Consensus 258 il~~i~~~---~~vII~apTGSGKTt~~~~~ile 288 (913)
+..++..+ ..++++||.|+|||+.+-.++-.
T Consensus 28 L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~ 61 (620)
T PRK14948 28 LKNALISNRIAPAYLFTGPRGTGKTSSARILAKS 61 (620)
T ss_pred HHHHHHcCCCCceEEEECCCCCChHHHHHHHHHH
Confidence 33444444 35699999999999988766543
No 339
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=92.72 E-value=0.18 Score=62.82 Aligned_cols=70 Identities=17% Similarity=0.150 Sum_probs=51.2
Q ss_pred cHHHHHHHHHHHHcCCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHHHHHhC
Q 002521 251 SFKEKERLLQAIARNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVSAERG 323 (913)
Q Consensus 251 ~~~~q~~il~~i~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv~~~~~ 323 (913)
+.+.|.+++.. ....++|.|..|||||+++..-+...+ ....-....|++++.|+-+|..+.+|+.+..+
T Consensus 5 Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~L~~Ria~Li-~~~~v~p~~IL~lTFTnkAA~em~~Rl~~~~~ 74 (715)
T TIGR01075 5 LNDKQREAVAA--PPGNLLVLAGAGSGKTRVLTHRIAWLL-SVENASPHSIMAVTFTNKAAAEMRHRIGALLG 74 (715)
T ss_pred cCHHHHHHHcC--CCCCEEEEecCCCCHHHHHHHHHHHHH-HcCCCCHHHeEeeeccHHHHHHHHHHHHHHhc
Confidence 34567776654 346788899999999988776665443 32222345799999999999999999988554
No 340
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=92.72 E-value=0.69 Score=55.49 Aligned_cols=44 Identities=18% Similarity=0.027 Sum_probs=24.8
Q ss_pred CeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHH
Q 002521 266 QVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMA 313 (913)
Q Consensus 266 ~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~q 313 (913)
+.++|.|++|+|||..+-.+..+ +..... ..+|+++ +...++.+
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~-a~~~~~--g~~V~Yi-taeef~~e 358 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHY-ARRLYP--GTRVRYV-SSEEFTNE 358 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHH-HHHhCC--CCeEEEe-eHHHHHHH
Confidence 34899999999999755433332 322112 2355554 44444443
No 341
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.66 E-value=0.31 Score=59.04 Aligned_cols=30 Identities=30% Similarity=0.409 Sum_probs=21.9
Q ss_pred HHHHHHcCC---eEEEEcCCCchHHhHHHHHHH
Q 002521 258 LLQAIARNQ---VIVISGETGCGKTTQLPQYIL 287 (913)
Q Consensus 258 il~~i~~~~---~vII~apTGSGKTt~~~~~il 287 (913)
+..++..++ .+|++||.|+|||+.+-.++-
T Consensus 28 L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~ 60 (585)
T PRK14950 28 LRNAIAEGRVAHAYLFTGPRGVGKTSTARILAK 60 (585)
T ss_pred HHHHHHhCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 444555553 458999999999998876653
No 342
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=92.63 E-value=0.2 Score=54.77 Aligned_cols=68 Identities=26% Similarity=0.251 Sum_probs=41.3
Q ss_pred HHHHHHHHc----CCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHHHHHhCCC
Q 002521 256 ERLLQAIAR----NQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVSAERGEP 325 (913)
Q Consensus 256 ~~il~~i~~----~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv~~~~~~~ 325 (913)
+++.+.+.. .+++.|.|..|+|||+.+..++.+... .....+.+.+.........++.+.+...++..
T Consensus 6 ~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~--~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~ 77 (287)
T PF00931_consen 6 EKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRI--KNRFDGVIWVSLSKNPSLEQLLEQILRQLGEP 77 (287)
T ss_dssp HHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHH--CCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC
T ss_pred HHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeeccccccc--cccccccccccccccccccccccccccccccc
Confidence 456666665 468899999999999999877755332 22223444444344433355555666655543
No 343
>cd02641 R3H_Smubp-2_like R3H domain of Smubp-2_like proteins. Smubp-2_like proteins also contain a helicase_like and an AN1-like Zinc finger domain and have been shown to bind single-stranded DNA. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA.
Probab=92.58 E-value=0.29 Score=40.17 Aligned_cols=55 Identities=20% Similarity=0.227 Sum_probs=43.5
Q ss_pred HHHHHHHhhhhccCCCceEEeccccCcccHHHHHHHHHHcccceeeccc----EEEEec
Q 002521 83 NEWKWKLGMLLRSETDQEVTSWDKRDRRDYEQISFLAKRMGLYSQVYGK----AVVVSK 137 (913)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 137 (913)
+++...|..++.++..+++.-.-..+--+-..||++|..+||+++++|. .++++|
T Consensus 2 ~~~~~~i~~F~~~~~~~~l~F~p~ls~~eR~~vH~lA~~~gL~s~S~G~g~~R~v~v~k 60 (60)
T cd02641 2 KHLKAMVKAFMKDPKATELEFPPTLSSHDRLLVHELAEELGLRHESTGEGSDRVITVSK 60 (60)
T ss_pred hhHHHHHHHHHcCCCcCcEECCCCCCHHHHHHHHHHHHHcCCceEeeCCCCceEEEeeC
Confidence 5678899999988766776655556666777899999999999999985 566654
No 344
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=92.43 E-value=0.11 Score=56.35 Aligned_cols=47 Identities=34% Similarity=0.313 Sum_probs=30.6
Q ss_pred HHHHHHcCCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHH
Q 002521 258 LLQAIARNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRI 309 (913)
Q Consensus 258 il~~i~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~ 309 (913)
+..++..+.+++++|+|||||||..-.+ ++.+-.. ..+|++++...+
T Consensus 120 l~~~v~~~~~ili~G~tGSGKTT~l~al-l~~i~~~----~~~iv~iEd~~E 166 (270)
T PF00437_consen 120 LRSAVRGRGNILISGPTGSGKTTLLNAL-LEEIPPE----DERIVTIEDPPE 166 (270)
T ss_dssp HHHCHHTTEEEEEEESTTSSHHHHHHHH-HHHCHTT----TSEEEEEESSS-
T ss_pred HhhccccceEEEEECCCccccchHHHHH-hhhcccc----ccceEEeccccc
Confidence 3334466889999999999999988544 4433211 246777665444
No 345
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=92.41 E-value=0.23 Score=56.64 Aligned_cols=29 Identities=17% Similarity=0.170 Sum_probs=23.4
Q ss_pred HHHHcCCeEEEEcCCCchHHhHHHHHHHH
Q 002521 260 QAIARNQVIVISGETGCGKTTQLPQYILE 288 (913)
Q Consensus 260 ~~i~~~~~vII~apTGSGKTt~~~~~ile 288 (913)
+.+.++.+++..||+|+|||..+...-..
T Consensus 204 ~fve~~~Nli~lGp~GTGKThla~~l~~~ 232 (449)
T TIGR02688 204 PLVEPNYNLIELGPKGTGKSYIYNNLSPY 232 (449)
T ss_pred HHHhcCCcEEEECCCCCCHHHHHHHHhHH
Confidence 56788999999999999999776654443
No 346
>PRK04195 replication factor C large subunit; Provisional
Probab=92.41 E-value=0.8 Score=54.23 Aligned_cols=23 Identities=22% Similarity=0.387 Sum_probs=18.8
Q ss_pred CCeEEEEcCCCchHHhHHHHHHH
Q 002521 265 NQVIVISGETGCGKTTQLPQYIL 287 (913)
Q Consensus 265 ~~~vII~apTGSGKTt~~~~~il 287 (913)
.+.+++.||+|+|||+.+-.++-
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~ 61 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALAN 61 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999988765543
No 347
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=92.36 E-value=0.2 Score=55.16 Aligned_cols=49 Identities=29% Similarity=0.214 Sum_probs=32.8
Q ss_pred HHHHHHcCCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHH
Q 002521 258 LLQAIARNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAM 312 (913)
Q Consensus 258 il~~i~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~ 312 (913)
++.++....+++|+|.|||||||.+-.+... ....-+|+|+.-+.+|-.
T Consensus 166 L~~av~~r~NILisGGTGSGKTTlLNal~~~------i~~~eRvItiEDtaELql 214 (355)
T COG4962 166 LRRAVGIRCNILISGGTGSGKTTLLNALSGF------IDSDERVITIEDTAELQL 214 (355)
T ss_pred HHHHHhhceeEEEeCCCCCCHHHHHHHHHhc------CCCcccEEEEeehhhhcc
Confidence 3444455569999999999999866543321 122338999888877653
No 348
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=92.31 E-value=0.46 Score=57.81 Aligned_cols=135 Identities=16% Similarity=0.160 Sum_probs=78.2
Q ss_pred HHHHHHHHhhhcCCCcEEEEcCChHHHHHHHHHHHcCCCC---CCCCCeEEEEecCCCChHHH----HHHhccCCCCccE
Q 002521 515 IEAVLCHICRKECPGAVLVFMTGWEDISCLRDQLKSHPLL---GDPNRVLLLTCHGSMPTSEQ----KFIFEKAPPNIRK 587 (913)
Q Consensus 515 i~~ll~~i~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~---~~~~~~~v~~lHs~l~~~er----~~v~~~f~~g~~k 587 (913)
+.+.+...++.-+.| +|||+|+....+++....+...+. .....+.+.+=-+.--.+-. +.+...-..|..-
T Consensus 549 lg~~i~~v~rvVp~G-~L~FfPSY~vmdk~~tfw~~~~~we~~~~vk~l~vEPr~k~~f~e~m~~y~~~i~~pes~ga~~ 627 (945)
T KOG1132|consen 549 LGEAILNVARVVPYG-LLIFFPSYPVMDKLITFWQNRGLWERMEKVKKLVVEPRSKSEFTEVMSRYYNAIADPESSGAVF 627 (945)
T ss_pred HHHHHHHHHhhcccc-eEEeccchHHHHHHHHHHHcchHHHHhhcccCceeccCCccchHHHHHHHHHHhhCccccceEE
Confidence 445555566666666 999999998877775555442110 01112223222111111111 2233332345566
Q ss_pred EEEecchhhhcCCCCCe--EEEEeCCCCcceeecCC-----------CCCC----cC--CccccCHhh---HHHHhcccC
Q 002521 588 IVLATNMAEASITINDI--VFVVDCGKAKETTYDAL-----------NNTP----CL--LPSWISQAS---ARQRRGRAG 645 (913)
Q Consensus 588 VLVATniae~GIdIp~v--~~VId~g~~k~~~yd~~-----------~~~~----~l--~~~~iSka~---~~QR~GRAG 645 (913)
.-||---+.+|+|+-|- +.||-.|+|-.+.-|+. .+.. .+ ...|.+... ..|-+||+-
T Consensus 628 ~aVcRGKVSEGlDFsD~~~RaVI~tGlPyP~~~D~~V~lK~~y~D~~~~~~g~~s~~lsg~eWY~~qA~RAvNQAiGRvi 707 (945)
T KOG1132|consen 628 FAVCRGKVSEGLDFSDDNGRAVIITGLPYPPVMDPRVKLKKQYLDENSSLKGAKSQLLSGQEWYSQQAYRAVNQAIGRVI 707 (945)
T ss_pred EEEecccccCCCCccccCCceeEEecCCCCCCCCHHHHHHHHhhhhhccccccccccccchHHHHhhHHHHHHHHHHHHH
Confidence 77888899999999866 88999999976665543 1111 12 245666443 458899999
Q ss_pred CCCCc
Q 002521 646 RVQPG 650 (913)
Q Consensus 646 R~~~G 650 (913)
|.+..
T Consensus 708 RHR~D 712 (945)
T KOG1132|consen 708 RHRND 712 (945)
T ss_pred hhhcc
Confidence 98653
No 349
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.30 E-value=0.34 Score=57.18 Aligned_cols=31 Identities=26% Similarity=0.302 Sum_probs=21.4
Q ss_pred HHHHHHHcCC---eEEEEcCCCchHHhHHHHHHH
Q 002521 257 RLLQAIARNQ---VIVISGETGCGKTTQLPQYIL 287 (913)
Q Consensus 257 ~il~~i~~~~---~vII~apTGSGKTt~~~~~il 287 (913)
.+..++..++ ..+++||.|+|||+.+-.+..
T Consensus 27 ~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk 60 (486)
T PRK14953 27 ILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAK 60 (486)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4445555543 357899999999987765543
No 350
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=92.25 E-value=0.2 Score=56.16 Aligned_cols=48 Identities=31% Similarity=0.317 Sum_probs=32.2
Q ss_pred HHHHHHcCCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHH
Q 002521 258 LLQAIARNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISA 311 (913)
Q Consensus 258 il~~i~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La 311 (913)
+..++..+.+++|+|+|||||||.+-. ++..+ ...-+|+++.-+.++.
T Consensus 153 L~~~v~~~~nili~G~tgSGKTTll~a-L~~~i-----p~~~ri~tiEd~~El~ 200 (332)
T PRK13900 153 LEHAVISKKNIIISGGTSTGKTTFTNA-ALREI-----PAIERLITVEDAREIV 200 (332)
T ss_pred HHHHHHcCCcEEEECCCCCCHHHHHHH-HHhhC-----CCCCeEEEecCCCccc
Confidence 444567788999999999999987743 34433 1234677765555544
No 351
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=92.20 E-value=0.61 Score=56.88 Aligned_cols=130 Identities=19% Similarity=0.173 Sum_probs=89.9
Q ss_pred HHHHHHHHhhh--cCCCcEEEEcCChHHHHHHHHHHHcCCCCCC---------------CCCeEEEEecCCCChHHHHHH
Q 002521 515 IEAVLCHICRK--ECPGAVLVFMTGWEDISCLRDQLKSHPLLGD---------------PNRVLLLTCHGSMPTSEQKFI 577 (913)
Q Consensus 515 i~~ll~~i~~~--~~~g~iLVF~~~~~~i~~l~~~L~~~~~~~~---------------~~~~~v~~lHs~l~~~er~~v 577 (913)
+..+|..|++. .-+.+.|||-.+......+..+|...+..+. ..+.--..+.|.....+|+..
T Consensus 1127 KmiLLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~ 1206 (1567)
T KOG1015|consen 1127 KMILLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKW 1206 (1567)
T ss_pred ceehHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHHH
Confidence 33455555543 2467899999998888888777764221111 013345678899999999999
Q ss_pred hccCCCC----ccEEEEecchhhhcCCCCCeEEEEeCCCCcceeecCCCCCCcCCccccCHhhHHHHhcccCCCCCcEEE
Q 002521 578 FEKAPPN----IRKIVLATNMAEASITINDIVFVVDCGKAKETTYDALNNTPCLLPSWISQASARQRRGRAGRVQPGQCY 653 (913)
Q Consensus 578 ~~~f~~g----~~kVLVATniae~GIdIp~v~~VId~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~~~G~c~ 653 (913)
.+.|.+- .+-.||+|-+..-|||+=+.+-||.++..-++.|| + +.+=|+=|-|-..|-+.|
T Consensus 1207 ~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyD--------t-------QSIFRvyRfGQtKPvyiY 1271 (1567)
T KOG1015|consen 1207 AEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYD--------T-------QSIFRVYRFGQTKPVYIY 1271 (1567)
T ss_pred HHHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccc--------h-------HHHHHHHhhcCcCceeeh
Confidence 8888652 34689999999999999988888874444333333 2 334567777777999999
Q ss_pred EecChh
Q 002521 654 HLYPRC 659 (913)
Q Consensus 654 ~L~t~~ 659 (913)
||.-..
T Consensus 1272 RfiAqG 1277 (1567)
T KOG1015|consen 1272 RFIAQG 1277 (1567)
T ss_pred hhhhcc
Confidence 996543
No 352
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.18 E-value=0.8 Score=55.70 Aligned_cols=30 Identities=37% Similarity=0.488 Sum_probs=21.5
Q ss_pred HHHHHHHcCC---eEEEEcCCCchHHhHHHHHH
Q 002521 257 RLLQAIARNQ---VIVISGETGCGKTTQLPQYI 286 (913)
Q Consensus 257 ~il~~i~~~~---~vII~apTGSGKTt~~~~~i 286 (913)
.+..++..++ .++++||.|+|||+.+..+.
T Consensus 28 ~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lA 60 (614)
T PRK14971 28 TLKNAIATNKLAHAYLFCGPRGVGKTTCARIFA 60 (614)
T ss_pred HHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHH
Confidence 4555666653 47899999999999555443
No 353
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=92.16 E-value=0.69 Score=45.61 Aligned_cols=111 Identities=23% Similarity=0.287 Sum_probs=56.4
Q ss_pred CeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHHHHHhCCCcccEeeeEEec-cccC----
Q 002521 266 QVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVSAERGEPLGETVGYKVRL-EGMK---- 340 (913)
Q Consensus 266 ~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv~~~~~~~~g~~vGy~v~~-e~~~---- 340 (913)
-.+.|+|++|+||||.+.. +.+.+...+. +-+-+++ |- +.. -|..+||.+-. ++-.
T Consensus 6 mki~ITG~PGvGKtTl~~k-i~e~L~~~g~-kvgGf~t--~E----------VR~-----gGkR~GF~Ivdl~tg~~~~l 66 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLK-IAEKLREKGY-KVGGFIT--PE----------VRE-----GGKRIGFKIVDLATGEEGIL 66 (179)
T ss_pred eEEEEeCCCCccHHHHHHH-HHHHHHhcCc-eeeeEEe--ee----------eec-----CCeEeeeEEEEccCCceEEE
Confidence 3688999999999997764 4444433221 1223444 31 211 35567776531 1000
Q ss_pred --CCCceEEEEecHHHHHHHhc------CCCCCCceEEEeccccccCcchHHHHHHHHHhCcc
Q 002521 341 --GKNTHLLFCTSGILLRRLLS------DHNLNGVTHVFVDEIHERGMNEDFLLIVLKDLLPR 395 (913)
Q Consensus 341 --~~~~~Ivv~T~g~Ll~~l~~------~~~L~~~s~IIIDEaHer~~~~d~ll~llk~ll~~ 395 (913)
......-++-.++.++.+.. ...+..-++|||||+--+-+.+.-....+..++..
T Consensus 67 a~~~~~~~rvGkY~V~v~~le~i~~~al~rA~~~aDvIIIDEIGpMElks~~f~~~ve~vl~~ 129 (179)
T COG1618 67 ARVGFSRPRVGKYGVNVEGLEEIAIPALRRALEEADVIIIDEIGPMELKSKKFREAVEEVLKS 129 (179)
T ss_pred EEcCCCCcccceEEeeHHHHHHHhHHHHHHHhhcCCEEEEecccchhhccHHHHHHHHHHhcC
Confidence 01122333333333332211 01344578999999996655554444555555543
No 354
>PHA00729 NTP-binding motif containing protein
Probab=92.11 E-value=0.37 Score=50.65 Aligned_cols=21 Identities=38% Similarity=0.387 Sum_probs=17.5
Q ss_pred eEEEEcCCCchHHhHHHHHHH
Q 002521 267 VIVISGETGCGKTTQLPQYIL 287 (913)
Q Consensus 267 ~vII~apTGSGKTt~~~~~il 287 (913)
+++|.|++|+|||+.+.....
T Consensus 19 nIlItG~pGvGKT~LA~aLa~ 39 (226)
T PHA00729 19 SAVIFGKQGSGKTTYALKVAR 39 (226)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999987765443
No 355
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=91.97 E-value=0.83 Score=57.74 Aligned_cols=19 Identities=32% Similarity=0.539 Sum_probs=15.7
Q ss_pred eEEEEcCCCchHHhHHHHH
Q 002521 267 VIVISGETGCGKTTQLPQY 285 (913)
Q Consensus 267 ~vII~apTGSGKTt~~~~~ 285 (913)
++++.||||+|||..+-..
T Consensus 598 ~~lf~Gp~GvGKT~lA~~L 616 (852)
T TIGR03345 598 VFLLVGPSGVGKTETALAL 616 (852)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5899999999999776543
No 356
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=91.93 E-value=0.22 Score=51.00 Aligned_cols=28 Identities=46% Similarity=0.566 Sum_probs=22.3
Q ss_pred HHHHHHHcCCeEEEEcCCCchHHhHHHH
Q 002521 257 RLLQAIARNQVIVISGETGCGKTTQLPQ 284 (913)
Q Consensus 257 ~il~~i~~~~~vII~apTGSGKTt~~~~ 284 (913)
-+...+..+.+++|+|||||||||.+-.
T Consensus 17 ~l~~~v~~g~~i~I~G~tGSGKTTll~a 44 (186)
T cd01130 17 YLWLAVEARKNILISGGTGSGKTTLLNA 44 (186)
T ss_pred HHHHHHhCCCEEEEECCCCCCHHHHHHH
Confidence 3444567789999999999999987643
No 357
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=91.93 E-value=0.57 Score=50.27 Aligned_cols=21 Identities=29% Similarity=0.360 Sum_probs=17.1
Q ss_pred CeEEEEcCCCchHHhHHHHHH
Q 002521 266 QVIVISGETGCGKTTQLPQYI 286 (913)
Q Consensus 266 ~~vII~apTGSGKTt~~~~~i 286 (913)
+.+++.||+|-||||.+-+..
T Consensus 53 DHvLl~GPPGlGKTTLA~IIA 73 (332)
T COG2255 53 DHVLLFGPPGLGKTTLAHIIA 73 (332)
T ss_pred CeEEeeCCCCCcHHHHHHHHH
Confidence 479999999999999765443
No 358
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=91.86 E-value=2.4 Score=57.03 Aligned_cols=65 Identities=15% Similarity=0.149 Sum_probs=42.6
Q ss_pred CCcHHHHHHHHHHHHc--CCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHH
Q 002521 249 LPSFKEKERLLQAIAR--NQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAV 314 (913)
Q Consensus 249 lP~~~~q~~il~~i~~--~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qv 314 (913)
..+...|.+.+..+.. ++.++|.|..|+||||.+-..+ +.+..........|+.+.||--+|..+
T Consensus 966 ~~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~l~~v~-~~~~~l~~~~~~~V~glAPTgrAAk~L 1032 (1747)
T PRK13709 966 EGLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQFRAVM-SAVNTLPESERPRVVGLGPTHRAVGEM 1032 (1747)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHHHHH-HHHHHhhcccCceEEEECCcHHHHHHH
Confidence 4567778888888776 4799999999999998764332 222111111123577778998777544
No 359
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=91.73 E-value=0.48 Score=59.16 Aligned_cols=106 Identities=21% Similarity=0.216 Sum_probs=67.5
Q ss_pred cHHHHHHHHHHHHcCCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHHHHHhCCCcccEe
Q 002521 251 SFKEKERLLQAIARNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVSAERGEPLGETV 330 (913)
Q Consensus 251 ~~~~q~~il~~i~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv~~~~~~~~g~~v 330 (913)
+.+.|.+++.. ....++|.|..|||||+.+..-+...+...+ -..-.|+++.-|+.+|..+.+|+.+..+.
T Consensus 5 Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~l~~ria~Li~~~~-i~P~~IL~lTFT~kAA~em~~Rl~~~~~~------ 75 (726)
T TIGR01073 5 LNPEQREAVKT--TEGPLLIMAGAGSGKTRVLTHRIAHLIAEKN-VAPWNILAITFTNKAAREMKERVEKLLGP------ 75 (726)
T ss_pred cCHHHHHHHhC--CCCCEEEEeCCCCCHHHHHHHHHHHHHHcCC-CCHHHeeeeeccHHHHHHHHHHHHHHhcc------
Confidence 34567777665 3567888999999999888776655442222 23347888889999999999999875432
Q ss_pred eeEEeccccCCCCceEEEEecHHHHHHHh-cCCC-CC-CceEEEecccc
Q 002521 331 GYKVRLEGMKGKNTHLLFCTSGILLRRLL-SDHN-LN-GVTHVFVDEIH 376 (913)
Q Consensus 331 Gy~v~~e~~~~~~~~Ivv~T~g~Ll~~l~-~~~~-L~-~~s~IIIDEaH 376 (913)
....+.|+|-..|...+. .... +. .-.+-|+|+..
T Consensus 76 -----------~~~~~~i~TFHs~~~~iLr~~~~~~g~~~~f~i~d~~~ 113 (726)
T TIGR01073 76 -----------VAEDIWISTFHSMCVRILRRDIDRIGINRNFSIIDPTD 113 (726)
T ss_pred -----------ccCCcEEEcHHHHHHHHHHHHHHHhCCCCCCCcCCHHH
Confidence 112577888755544332 2111 10 12344788776
No 360
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=91.65 E-value=0.82 Score=62.61 Aligned_cols=62 Identities=21% Similarity=0.296 Sum_probs=42.9
Q ss_pred CCcHHHHHHHHHHHHc--CCeEEEEcCCCchHHhHHH---HHHHHHHHHhCCCCceEEEEcchhHHHHHHH
Q 002521 249 LPSFKEKERLLQAIAR--NQVIVISGETGCGKTTQLP---QYILESEIESGRGAFCNIICTQPRRISAMAV 314 (913)
Q Consensus 249 lP~~~~q~~il~~i~~--~~~vII~apTGSGKTt~~~---~~ile~~~~~~~~~~~~Ilv~qPrr~La~qv 314 (913)
..+...|.+.+..+.. ++.++|.|..|+||||.+- ..+.+.+ +. . ...|+.+.||-.+|..+
T Consensus 1018 ~~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~-~~-~--g~~v~glApT~~Aa~~L 1084 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAF-ES-E--QLQVIGLAPTHEAVGEL 1084 (1960)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHH-Hh-c--CCeEEEEeChHHHHHHH
Confidence 4567788888888765 4688999999999998873 2333322 21 1 24677778998877655
No 361
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=91.53 E-value=1.2 Score=52.17 Aligned_cols=152 Identities=13% Similarity=0.078 Sum_probs=86.6
Q ss_pred hcCCCcHHHHHHHHHHHHc----------CCeEEEEcCCCchHHhHHHHHHHH-HHHHhCCCCceEEEEcchhHHHHHHH
Q 002521 246 RKSLPSFKEKERLLQAIAR----------NQVIVISGETGCGKTTQLPQYILE-SEIESGRGAFCNIICTQPRRISAMAV 314 (913)
Q Consensus 246 r~~lP~~~~q~~il~~i~~----------~~~vII~apTGSGKTt~~~~~ile-~~~~~~~~~~~~Ilv~qPrr~La~qv 314 (913)
..++++-++|.-|+.+|.. -...+|..|-+-|||+.+.-+++- .+.....+ ..+.++.|+..-|.+.
T Consensus 57 ~~p~~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~~~~--~~~~i~A~s~~qa~~~ 134 (546)
T COG4626 57 GFPESLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNWRSG--AGIYILAPSVEQAANS 134 (546)
T ss_pred CCccccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhhhcC--CcEEEEeccHHHHHHh
Confidence 3467778999999999973 134677889999999877644433 33333333 3566667998888877
Q ss_pred HHHHHHHhCCC--cccEeeeEEeccccCCCCceEEEEecHHHHHHHhcCC---CCCCceEEEeccccccCcchHHHHHHH
Q 002521 315 SERVSAERGEP--LGETVGYKVRLEGMKGKNTHLLFCTSGILLRRLLSDH---NLNGVTHVFVDEIHERGMNEDFLLIVL 389 (913)
Q Consensus 315 a~rv~~~~~~~--~g~~vGy~v~~e~~~~~~~~Ivv~T~g~Ll~~l~~~~---~L~~~s~IIIDEaHer~~~~d~ll~ll 389 (913)
...+....... +...++++. ....|.+.-....++.+..++ .=.+..+.|+||.|+.+-..+.+ ..+
T Consensus 135 F~~ar~mv~~~~~l~~~~~~q~-------~s~~i~~~~~~s~ik~~aa~~~~~Dg~~~~~~I~DEih~f~~~~~~~-~~~ 206 (546)
T COG4626 135 FNPARDMVKRDDDLRDLCNVQT-------HSRTITHRKTDSTIKAVAADPNTVDGLNSVGAIIDELHLFGKQEDMY-SEA 206 (546)
T ss_pred hHHHHHHHHhCcchhhhhcccc-------ceeEEEecccceeeeeeccCCCcccCCCcceEEEehhhhhcCHHHHH-HHH
Confidence 66654432211 111111111 111233333333444444443 33457899999999765443333 333
Q ss_pred HHhCccCccceEEEeccc
Q 002521 390 KDLLPRRRDLRLILMSAT 407 (913)
Q Consensus 390 k~ll~~~~~~kiIlmSAT 407 (913)
+.-+..+|+.+++..|-.
T Consensus 207 ~~g~~ar~~~l~~~ITT~ 224 (546)
T COG4626 207 KGGLGARPEGLVVYITTS 224 (546)
T ss_pred HhhhccCcCceEEEEecC
Confidence 444555666666666543
No 362
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=91.41 E-value=0.31 Score=57.72 Aligned_cols=51 Identities=16% Similarity=0.245 Sum_probs=35.9
Q ss_pred HcCCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHHH
Q 002521 263 ARNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVS 319 (913)
Q Consensus 263 ~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv~ 319 (913)
..+..++|.||+|+|||+...+++.+.+. +|..+.++- .-+...|+..+..
T Consensus 261 ~~gs~~li~G~~G~GKt~l~~~f~~~~~~---~ge~~~y~s---~eEs~~~i~~~~~ 311 (484)
T TIGR02655 261 FKDSIILATGATGTGKTLLVSKFLENACA---NKERAILFA---YEESRAQLLRNAY 311 (484)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHH---CCCeEEEEE---eeCCHHHHHHHHH
Confidence 45679999999999999999999887652 344444443 3455566666653
No 363
>cd02640 R3H_NRF R3H domain of the NF-kappaB-repression factor (NRF). NRF is a nuclear inhibitor of NF-kappaB proteins that can silence the IFNbeta promoter via binding to a negative regulatory element (NRE). Beside R3H NRF also contains a G-patch domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=91.25 E-value=0.47 Score=38.93 Aligned_cols=52 Identities=21% Similarity=0.293 Sum_probs=41.4
Q ss_pred HHHHhhhhccCCCceEEeccccCcccHHHHHHHHHHcccceeeccc----EEEEec
Q 002521 86 KWKLGMLLRSETDQEVTSWDKRDRRDYEQISFLAKRMGLYSQVYGK----AVVVSK 137 (913)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 137 (913)
+..|..++.+..++|+.---..+..+=-.||++|..+||.+++||. .++++|
T Consensus 5 ~~~i~~F~~s~~~~~l~f~p~lt~~eR~~vH~~a~~~gL~s~S~G~g~~R~v~v~k 60 (60)
T cd02640 5 RQIIQNYAHSDDIRDMVFSPEFSKEERALIHQIAQKYGLKSRSYGSGNDRYLVISK 60 (60)
T ss_pred HHHHHHHHcCCccceEEcCCCCCHHHHHHHHHHHHHcCCceeeEeCCCCeEEEEeC
Confidence 5667777776667887766667778888999999999999999987 456653
No 364
>PRK11823 DNA repair protein RadA; Provisional
Probab=91.22 E-value=0.35 Score=56.53 Aligned_cols=87 Identities=23% Similarity=0.343 Sum_probs=50.8
Q ss_pred HHcCCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHHHHHhCCCcccEeeeEEeccccCC
Q 002521 262 IARNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVSAERGEPLGETVGYKVRLEGMKG 341 (913)
Q Consensus 262 i~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv~~~~~~~~g~~vGy~v~~e~~~~ 341 (913)
+..+..++|.|++|+|||+...+++.... ..+. +++++. ..+...|+..+. ..++.....
T Consensus 77 i~~Gs~~lI~G~pG~GKTtL~lq~a~~~a---~~g~--~vlYvs-~Ees~~qi~~ra-~rlg~~~~~------------- 136 (446)
T PRK11823 77 LVPGSVVLIGGDPGIGKSTLLLQVAARLA---AAGG--KVLYVS-GEESASQIKLRA-ERLGLPSDN------------- 136 (446)
T ss_pred ccCCEEEEEECCCCCCHHHHHHHHHHHHH---hcCC--eEEEEE-ccccHHHHHHHH-HHcCCChhc-------------
Confidence 34577999999999999999999887644 1232 333332 334455665554 323322111
Q ss_pred CCceEEEEe---cHHHHHHHhcCCCCCCceEEEecccc
Q 002521 342 KNTHLLFCT---SGILLRRLLSDHNLNGVTHVFVDEIH 376 (913)
Q Consensus 342 ~~~~Ivv~T---~g~Ll~~l~~~~~L~~~s~IIIDEaH 376 (913)
+.+.. -..+++.+.. .+.++||||+++
T Consensus 137 ----l~~~~e~~l~~i~~~i~~----~~~~lVVIDSIq 166 (446)
T PRK11823 137 ----LYLLAETNLEAILATIEE----EKPDLVVIDSIQ 166 (446)
T ss_pred ----EEEeCCCCHHHHHHHHHh----hCCCEEEEechh
Confidence 22222 1334444422 357899999998
No 365
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=91.22 E-value=0.71 Score=55.47 Aligned_cols=32 Identities=28% Similarity=0.440 Sum_probs=23.0
Q ss_pred HHHHHHHcCC---eEEEEcCCCchHHhHHHHHHHH
Q 002521 257 RLLQAIARNQ---VIVISGETGCGKTTQLPQYILE 288 (913)
Q Consensus 257 ~il~~i~~~~---~vII~apTGSGKTt~~~~~ile 288 (913)
.+..++.+++ .++++||.|+|||+.+-.+...
T Consensus 27 ~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~ 61 (563)
T PRK06647 27 TLKHSIESNKIANAYIFSGPRGVGKTSSARAFARC 61 (563)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3455555553 4789999999999988765543
No 366
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=91.20 E-value=1.5 Score=50.00 Aligned_cols=134 Identities=19% Similarity=0.244 Sum_probs=85.0
Q ss_pred CeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHHHHHhCCCcccEeeeEEeccccCCCCce
Q 002521 266 QVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVSAERGEPLGETVGYKVRLEGMKGKNTH 345 (913)
Q Consensus 266 ~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv~~~~~~~~g~~vGy~v~~e~~~~~~~~ 345 (913)
.+++.+|=-||||||.+....... . .++..+.++++=..|.+|..+.+.++...+..+... + .....
T Consensus 101 ~vImmvGLQGsGKTTt~~KLA~~l--k-k~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~-~---------~~~~P 167 (451)
T COG0541 101 TVILMVGLQGSGKTTTAGKLAKYL--K-KKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGS-G---------TEKDP 167 (451)
T ss_pred eEEEEEeccCCChHhHHHHHHHHH--H-HcCCceEEEecccCChHHHHHHHHHHHHcCCceecC-C---------CCCCH
Confidence 468889999999999887765432 2 266677888888889999988888888666554322 1 01111
Q ss_pred EEEEecHHHHHHHhcCCCCCCceEEEeccccccCcchHHHHHHHHHhCccCccceEEEecccc--CHHHHHhhhC
Q 002521 346 LLFCTSGILLRRLLSDHNLNGVTHVFVDEIHERGMNEDFLLIVLKDLLPRRRDLRLILMSATL--NAELFSNYFG 418 (913)
Q Consensus 346 Ivv~T~g~Ll~~l~~~~~L~~~s~IIIDEaHer~~~~d~ll~llk~ll~~~~~~kiIlmSATl--~~~~~~~yf~ 418 (913)
+-++..+ +... ....+++||||=|-+..++.+++..+....-..+|+--++.+-|++ ++...+.-|+
T Consensus 168 v~Iak~a--l~~a----k~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~aF~ 236 (451)
T COG0541 168 VEIAKAA--LEKA----KEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAKAFN 236 (451)
T ss_pred HHHHHHH--HHHH----HHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHHHHHh
Confidence 1111111 1112 3456899999999977777777666543333456776677788877 4444444443
No 367
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=91.08 E-value=0.26 Score=64.95 Aligned_cols=133 Identities=15% Similarity=0.154 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHcCCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHHHHHhCCCcccEeee
Q 002521 253 KEKERLLQAIARNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVSAERGEPLGETVGY 332 (913)
Q Consensus 253 ~~q~~il~~i~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv~~~~~~~~g~~vGy 332 (913)
..|.+++. ..+.+++|+|.-|||||+++..-++..+.. + ...-.|++++=|+.+|..+.+|+.+.+...+...-..
T Consensus 4 ~~Q~~ai~--~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~-~-~~~~~il~~tFt~~aa~e~~~ri~~~l~~~~~~~p~~ 79 (1232)
T TIGR02785 4 DEQWQAIY--TRGQNILVSASAGSGKTAVLVERIIKKILR-G-VDIDRLLVVTFTNAAAREMKERIEEALQKALQQEPNS 79 (1232)
T ss_pred HHHHHHHh--CCCCCEEEEecCCCcHHHHHHHHHHHHHhc-C-CCHhhEEEEeccHHHHHHHHHHHHHHHHHHHhcCchh
Confidence 44566665 368899999999999999988877775543 2 1223577777999999999999987654322211110
Q ss_pred EEeccccCCCCceEEEEecHHHHHHH-hcCCCCCCc--eEEEeccccccCcchHHHHHHHH
Q 002521 333 KVRLEGMKGKNTHLLFCTSGILLRRL-LSDHNLNGV--THVFVDEIHERGMNEDFLLIVLK 390 (913)
Q Consensus 333 ~v~~e~~~~~~~~Ivv~T~g~Ll~~l-~~~~~L~~~--s~IIIDEaHer~~~~d~ll~llk 390 (913)
..+......-...-|+|-..+...+ ......-++ ++=|.||....-+..+.+..++.
T Consensus 80 -~~L~~q~~~~~~~~i~Tihsf~~~~~~~~~~~l~ldP~F~i~de~e~~ll~~e~~~~~~e 139 (1232)
T TIGR02785 80 -KHLRRQLALLNTANISTLHSFCLKVIRKHYYLLDLDPSFRILTDTEQLLLIKEVVDDVFE 139 (1232)
T ss_pred -HHHHHHHhhccCCeEeeHHHHHHHHHHHhhhhcCCCCCceeCCHHHHHHHHHHHHHHHHH
Confidence 0011111112345688876555444 333222122 44568888743233333333333
No 368
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=91.05 E-value=0.29 Score=51.59 Aligned_cols=39 Identities=28% Similarity=0.395 Sum_probs=28.8
Q ss_pred cCCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEc
Q 002521 264 RNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICT 304 (913)
Q Consensus 264 ~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~ 304 (913)
.+..++|.|++|+|||+.+.+++.+.+... |..+..+.+
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~--ge~vlyvs~ 56 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKNF--GEKVLYVSF 56 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHH--T--EEEEES
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhhc--CCcEEEEEe
Confidence 578999999999999999999998876541 334444443
No 369
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=91.04 E-value=0.61 Score=50.60 Aligned_cols=32 Identities=31% Similarity=0.580 Sum_probs=26.6
Q ss_pred HHHHHcCCeEEEEcCCCchHHhHHHHHHHHHH
Q 002521 259 LQAIARNQVIVISGETGCGKTTQLPQYILESE 290 (913)
Q Consensus 259 l~~i~~~~~vII~apTGSGKTt~~~~~ile~~ 290 (913)
+.-+..+..++|.|+||+|||+.+.+++...+
T Consensus 24 ~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~~ 55 (271)
T cd01122 24 TKGLRKGELIILTAGTGVGKTTFLREYALDLI 55 (271)
T ss_pred eEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 34566788999999999999999988887654
No 370
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=91.04 E-value=0.74 Score=46.33 Aligned_cols=23 Identities=48% Similarity=0.615 Sum_probs=17.2
Q ss_pred eEEEEcCCCchHHhHHHHHHHHHH
Q 002521 267 VIVISGETGCGKTTQLPQYILESE 290 (913)
Q Consensus 267 ~vII~apTGSGKTt~~~~~ile~~ 290 (913)
+++|+|+.|+||||.+-..+ +.+
T Consensus 1 ~i~iTG~pG~GKTTll~k~i-~~l 23 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVI-EEL 23 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHH-HHH
T ss_pred CEEEECcCCCCHHHHHHHHH-HHh
Confidence 47899999999999886554 444
No 371
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=91.03 E-value=0.33 Score=51.10 Aligned_cols=29 Identities=34% Similarity=0.455 Sum_probs=23.9
Q ss_pred HHcCCeEEEEcCCCchHHhHHHHHHHHHH
Q 002521 262 IARNQVIVISGETGCGKTTQLPQYILESE 290 (913)
Q Consensus 262 i~~~~~vII~apTGSGKTt~~~~~ile~~ 290 (913)
+..+..+.|.|++|||||+.+.+++....
T Consensus 16 ~~~g~v~~I~G~~GsGKT~l~~~ia~~~~ 44 (226)
T cd01393 16 IPTGRITEIFGEFGSGKTQLCLQLAVEAQ 44 (226)
T ss_pred CcCCcEEEEeCCCCCChhHHHHHHHHHhh
Confidence 34578999999999999998888776643
No 372
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=90.88 E-value=0.46 Score=53.84 Aligned_cols=32 Identities=38% Similarity=0.679 Sum_probs=22.7
Q ss_pred HHHHHH-cCCeEEEEcCCCchHHhHHHHHHHHHH
Q 002521 258 LLQAIA-RNQVIVISGETGCGKTTQLPQYILESE 290 (913)
Q Consensus 258 il~~i~-~~~~vII~apTGSGKTt~~~~~ile~~ 290 (913)
+.+.+. .+..++|+|||||||||.+-. ++..+
T Consensus 126 ~~~~~~~~~glilI~GpTGSGKTTtL~a-Ll~~i 158 (358)
T TIGR02524 126 IIDAIAPQEGIVFITGATGSGKSTLLAA-IIREL 158 (358)
T ss_pred HHHHHhccCCEEEEECCCCCCHHHHHHH-HHHHH
Confidence 344444 678999999999999987743 44443
No 373
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.85 E-value=1 Score=51.29 Aligned_cols=30 Identities=37% Similarity=0.532 Sum_probs=22.0
Q ss_pred HHHHHHHHcCC---eEEEEcCCCchHHhHHHHH
Q 002521 256 ERLLQAIARNQ---VIVISGETGCGKTTQLPQY 285 (913)
Q Consensus 256 ~~il~~i~~~~---~vII~apTGSGKTt~~~~~ 285 (913)
+.+...+..++ .++++||.|+|||+.+-.+
T Consensus 27 ~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~l 59 (367)
T PRK14970 27 NTLLNAIENNHLAQALLFCGPRGVGKTTCARIL 59 (367)
T ss_pred HHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHH
Confidence 34555555543 6889999999999877765
No 374
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=90.85 E-value=2.2 Score=48.84 Aligned_cols=37 Identities=24% Similarity=0.280 Sum_probs=22.4
Q ss_pred CCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEc
Q 002521 265 NQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICT 304 (913)
Q Consensus 265 ~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~ 304 (913)
.+-++|.|++|+|||...-.+..+.. ..++..+|+++
T Consensus 113 ~nplfi~G~~GlGKTHLl~Aign~~~---~~~~~a~v~y~ 149 (408)
T COG0593 113 YNPLFIYGGVGLGKTHLLQAIGNEAL---ANGPNARVVYL 149 (408)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHH---hhCCCceEEec
Confidence 46789999999999964433332221 23344556663
No 375
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=90.78 E-value=0.58 Score=53.19 Aligned_cols=28 Identities=29% Similarity=0.323 Sum_probs=21.4
Q ss_pred HHcCCeEEEEcCCCchHHhHHHHHHHHHH
Q 002521 262 IARNQVIVISGETGCGKTTQLPQYILESE 290 (913)
Q Consensus 262 i~~~~~vII~apTGSGKTt~~~~~ile~~ 290 (913)
+-.|+.+.|.||+|+||||.+-. |...+
T Consensus 165 ig~Gq~~~IvG~~g~GKTtL~~~-i~~~I 192 (415)
T TIGR00767 165 IGKGQRGLIVAPPKAGKTVLLQK-IAQAI 192 (415)
T ss_pred eCCCCEEEEECCCCCChhHHHHH-HHHhh
Confidence 35789999999999999986544 44443
No 376
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=90.77 E-value=0.26 Score=40.66 Aligned_cols=19 Identities=42% Similarity=0.705 Sum_probs=16.2
Q ss_pred CCeEEEEcCCCchHHhHHH
Q 002521 265 NQVIVISGETGCGKTTQLP 283 (913)
Q Consensus 265 ~~~vII~apTGSGKTt~~~ 283 (913)
+.+++|+|++||||||.+-
T Consensus 23 g~~tli~G~nGsGKSTllD 41 (62)
T PF13555_consen 23 GDVTLITGPNGSGKSTLLD 41 (62)
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4589999999999998754
No 377
>PRK13342 recombination factor protein RarA; Reviewed
Probab=90.74 E-value=1 Score=52.28 Aligned_cols=20 Identities=30% Similarity=0.403 Sum_probs=16.9
Q ss_pred eEEEEcCCCchHHhHHHHHH
Q 002521 267 VIVISGETGCGKTTQLPQYI 286 (913)
Q Consensus 267 ~vII~apTGSGKTt~~~~~i 286 (913)
.+++.||+|+|||+.+-.+.
T Consensus 38 ~ilL~GppGtGKTtLA~~ia 57 (413)
T PRK13342 38 SMILWGPPGTGKTTLARIIA 57 (413)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 78999999999998776543
No 378
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=90.47 E-value=0.47 Score=50.55 Aligned_cols=51 Identities=18% Similarity=0.283 Sum_probs=34.9
Q ss_pred HcCCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHHH
Q 002521 263 ARNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVS 319 (913)
Q Consensus 263 ~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv~ 319 (913)
..+..++|.|++|||||+.+.+++.+.+. +|..+.++.+ .+...++.++++
T Consensus 19 ~~gs~~lI~G~pGsGKT~la~~~l~~~~~---~ge~~lyvs~---ee~~~~i~~~~~ 69 (237)
T TIGR03877 19 PERNVVLLSGGPGTGKSIFSQQFLWNGLQ---MGEPGIYVAL---EEHPVQVRRNMA 69 (237)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHHHH---cCCcEEEEEe---eCCHHHHHHHHH
Confidence 35789999999999999999999988652 2344444432 334455555543
No 379
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=90.33 E-value=1.7 Score=48.00 Aligned_cols=124 Identities=18% Similarity=0.214 Sum_probs=71.0
Q ss_pred CeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHHHHHhCCCcccEeeeEEeccccCCCCce
Q 002521 266 QVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVSAERGEPLGETVGYKVRLEGMKGKNTH 345 (913)
Q Consensus 266 ~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv~~~~~~~~g~~vGy~v~~e~~~~~~~~ 345 (913)
.+++++|-.|+||||.+........ ..|..+.+.-.=--|+.|+.+-+.+.+..|..+... ........
T Consensus 140 ~Vil~vGVNG~GKTTTIaKLA~~l~---~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~--------~~G~DpAa 208 (340)
T COG0552 140 FVILFVGVNGVGKTTTIAKLAKYLK---QQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISG--------KEGADPAA 208 (340)
T ss_pred EEEEEEecCCCchHhHHHHHHHHHH---HCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEcc--------CCCCCcHH
Confidence 4788999999999999887665432 344555555455668988887777777655443211 11111122
Q ss_pred EEEEecHHHHHHHhcCCCCCCceEEEeccccccCcchHHHHHHHHHhCc-------cCccceEEEeccccC
Q 002521 346 LLFCTSGILLRRLLSDHNLNGVTHVFVDEIHERGMNEDFLLIVLKDLLP-------RRRDLRLILMSATLN 409 (913)
Q Consensus 346 Ivv~T~g~Ll~~l~~~~~L~~~s~IIIDEaHer~~~~d~ll~llk~ll~-------~~~~~kiIlmSATl~ 409 (913)
| ..+.+.. ..-.++++|+||=|-++.-...++.. |+++.+ .-|+-.++.+=||.-
T Consensus 209 V-------afDAi~~-Akar~~DvvliDTAGRLhnk~nLM~E-L~KI~rV~~k~~~~ap~e~llvlDAttG 270 (340)
T COG0552 209 V-------AFDAIQA-AKARGIDVVLIDTAGRLHNKKNLMDE-LKKIVRVIKKDDPDAPHEILLVLDATTG 270 (340)
T ss_pred H-------HHHHHHH-HHHcCCCEEEEeCcccccCchhHHHH-HHHHHHHhccccCCCCceEEEEEEcccC
Confidence 3 2333321 13468999999999955444444333 333222 122324556689873
No 380
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=90.26 E-value=0.41 Score=53.19 Aligned_cols=26 Identities=54% Similarity=0.622 Sum_probs=21.3
Q ss_pred HHHHHcCCeEEEEcCCCchHHhHHHH
Q 002521 259 LQAIARNQVIVISGETGCGKTTQLPQ 284 (913)
Q Consensus 259 l~~i~~~~~vII~apTGSGKTt~~~~ 284 (913)
.-++..+.+++|+|+|||||||.+-.
T Consensus 138 ~~~v~~~~~ili~G~tGsGKTTll~a 163 (308)
T TIGR02788 138 RLAIASRKNIIISGGTGSGKTTFLKS 163 (308)
T ss_pred HHHhhCCCEEEEECCCCCCHHHHHHH
Confidence 34566788999999999999997643
No 381
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.15 E-value=0.65 Score=56.29 Aligned_cols=30 Identities=23% Similarity=0.367 Sum_probs=22.1
Q ss_pred HHHHHHcCC---eEEEEcCCCchHHhHHHHHHH
Q 002521 258 LLQAIARNQ---VIVISGETGCGKTTQLPQYIL 287 (913)
Q Consensus 258 il~~i~~~~---~vII~apTGSGKTt~~~~~il 287 (913)
+..++..++ ..|++||.|+||||.+-.+.-
T Consensus 28 L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk 60 (620)
T PRK14954 28 IQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAK 60 (620)
T ss_pred HHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHH
Confidence 444555553 488999999999998876653
No 382
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=90.11 E-value=0.96 Score=50.75 Aligned_cols=21 Identities=19% Similarity=0.265 Sum_probs=17.5
Q ss_pred eEEEEcCCCchHHhHHHHHHH
Q 002521 267 VIVISGETGCGKTTQLPQYIL 287 (913)
Q Consensus 267 ~vII~apTGSGKTt~~~~~il 287 (913)
..++.||.|+|||+.+-.++-
T Consensus 30 a~Lf~G~~G~gk~~~a~~la~ 50 (329)
T PRK08058 30 AYLFEGAKGTGKKATALWLAK 50 (329)
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 569999999999988876553
No 383
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=90.10 E-value=4.2 Score=44.84 Aligned_cols=129 Identities=15% Similarity=0.208 Sum_probs=68.2
Q ss_pred cCCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcch----hHHHHHHHHHHHHHHhCCCcccEeeeEEecccc
Q 002521 264 RNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQP----RRISAMAVSERVSAERGEPLGETVGYKVRLEGM 339 (913)
Q Consensus 264 ~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qP----rr~La~qva~rv~~~~~~~~g~~vGy~v~~e~~ 339 (913)
+.+.+++.||-|||||+.+--.+.+ .. ..|.+..++=+-| -+.+...++..++.++... +...| +.
T Consensus 48 EsnsviiigprgsgkT~li~~~Ls~-~q--~~~E~~l~v~Lng~~~~dk~al~~I~rql~~e~~~~-~k~~g------sf 117 (408)
T KOG2228|consen 48 ESNSVIIIGPRGSGKTILIDTRLSD-IQ--ENGENFLLVRLNGELQTDKIALKGITRQLALELNRI-VKSFG------SF 117 (408)
T ss_pred CCCceEEEccCCCCceEeeHHHHhh-HH--hcCCeEEEEEECccchhhHHHHHHHHHHHHHHHhhh-heeec------cc
Confidence 4578999999999999766544444 21 2222333332222 3444555555555544322 11111 00
Q ss_pred CCCCceEEEEecHHHHHHHhcCCCCCCc-eEEEeccccc-cC-cchHHHHHHHHHhCccCccceEEEeccccCH
Q 002521 340 KGKNTHLLFCTSGILLRRLLSDHNLNGV-THVFVDEIHE-RG-MNEDFLLIVLKDLLPRRRDLRLILMSATLNA 410 (913)
Q Consensus 340 ~~~~~~Ivv~T~g~Ll~~l~~~~~L~~~-s~IIIDEaHe-r~-~~~d~ll~llk~ll~~~~~~kiIlmSATl~~ 410 (913)
. + +-..|+..+..+...... =++|+||+|- .+ .+.-++..++......+..+-+|++|..++.
T Consensus 118 t-e-------~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrld~ 183 (408)
T KOG2228|consen 118 T-E-------NLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRLDI 183 (408)
T ss_pred c-h-------hHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeeccccH
Confidence 0 0 124566666655544444 4567888882 22 2233344444444445556778888888865
No 384
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=90.07 E-value=1.5 Score=48.85 Aligned_cols=52 Identities=21% Similarity=0.129 Sum_probs=31.1
Q ss_pred HHHHHHhcCCCCCCceEEEeccccccCcchHHHHHHHHHhCccCc-cceEEEeccc
Q 002521 353 ILLRRLLSDHNLNGVTHVFVDEIHERGMNEDFLLIVLKDLLPRRR-DLRLILMSAT 407 (913)
Q Consensus 353 ~Ll~~l~~~~~L~~~s~IIIDEaHer~~~~d~ll~llk~ll~~~~-~~kiIlmSAT 407 (913)
.+.+.+...+....+.++|||+||.++ ..-.-.+||. +...| +..+|+.|..
T Consensus 100 ~l~~~~~~~p~~g~~kV~iI~~ae~m~--~~AaNaLLKt-LEEPp~~~~fiL~~~~ 152 (319)
T PRK08769 100 EISQKLALTPQYGIAQVVIVDPADAIN--RAACNALLKT-LEEPSPGRYLWLISAQ 152 (319)
T ss_pred HHHHHHhhCcccCCcEEEEeccHhhhC--HHHHHHHHHH-hhCCCCCCeEEEEECC
Confidence 344444455667789999999999653 3334455553 34333 4455555543
No 385
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=90.04 E-value=1.5 Score=48.91 Aligned_cols=60 Identities=15% Similarity=0.071 Sum_probs=35.7
Q ss_pred eEEEEecHHHHHHHhcCCCCCCceEEEeccccccCcchHHHHHHHHHhCccCccceEEEeccc
Q 002521 345 HLLFCTSGILLRRLLSDHNLNGVTHVFVDEIHERGMNEDFLLIVLKDLLPRRRDLRLILMSAT 407 (913)
Q Consensus 345 ~Ivv~T~g~Ll~~l~~~~~L~~~s~IIIDEaHer~~~~d~ll~llk~ll~~~~~~kiIlmSAT 407 (913)
.|-|-....+.+.+...+....+.++|||++|.++. .-.-.+||. +...|+..+|+.|..
T Consensus 103 ~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~--~aaNaLLK~-LEEPp~~~fILi~~~ 162 (314)
T PRK07399 103 QIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNE--AAANALLKT-LEEPGNGTLILIAPS 162 (314)
T ss_pred cCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCH--HHHHHHHHH-HhCCCCCeEEEEECC
Confidence 343444445666666667778999999999996543 333334433 344455555555543
No 386
>PRK10865 protein disaggregation chaperone; Provisional
Probab=89.93 E-value=2.5 Score=53.64 Aligned_cols=23 Identities=26% Similarity=0.319 Sum_probs=17.7
Q ss_pred eEEEEcCCCchHHhHHHHHHHHHH
Q 002521 267 VIVISGETGCGKTTQLPQYILESE 290 (913)
Q Consensus 267 ~vII~apTGSGKTt~~~~~ile~~ 290 (913)
.++++||||+|||+.+-. +.+.+
T Consensus 600 ~~Lf~Gp~G~GKT~lA~a-La~~l 622 (857)
T PRK10865 600 SFLFLGPTGVGKTELCKA-LANFM 622 (857)
T ss_pred eEEEECCCCCCHHHHHHH-HHHHh
Confidence 588999999999997744 44443
No 387
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=89.91 E-value=0.41 Score=51.95 Aligned_cols=30 Identities=30% Similarity=0.542 Sum_probs=21.3
Q ss_pred HHHHHHHc-CCeEEEEcCCCchHHhHHHHHH
Q 002521 257 RLLQAIAR-NQVIVISGETGCGKTTQLPQYI 286 (913)
Q Consensus 257 ~il~~i~~-~~~vII~apTGSGKTt~~~~~i 286 (913)
.+..++.. +..++|+|+|||||||.+-.++
T Consensus 71 ~l~~~~~~~~GlilisG~tGSGKTT~l~all 101 (264)
T cd01129 71 IFRKLLEKPHGIILVTGPTGSGKTTTLYSAL 101 (264)
T ss_pred HHHHHHhcCCCEEEEECCCCCcHHHHHHHHH
Confidence 34444443 4579999999999999775433
No 388
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=89.87 E-value=1.8 Score=45.92 Aligned_cols=59 Identities=29% Similarity=0.401 Sum_probs=35.4
Q ss_pred HHHHHHHcCC-eEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHHHH
Q 002521 257 RLLQAIARNQ-VIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVSA 320 (913)
Q Consensus 257 ~il~~i~~~~-~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv~~ 320 (913)
.+-.++..++ .+.++|+-|||||+..- .+++.. ..+..+.|++--|+-..+ .+.+++..
T Consensus 42 ~l~~~i~d~qg~~~vtGevGsGKTv~~R-al~~s~---~~d~~~~v~i~~~~~s~~-~~~~ai~~ 101 (269)
T COG3267 42 MLHAAIADGQGILAVTGEVGSGKTVLRR-ALLASL---NEDQVAVVVIDKPTLSDA-TLLEAIVA 101 (269)
T ss_pred HHHHHHhcCCceEEEEecCCCchhHHHH-HHHHhc---CCCceEEEEecCcchhHH-HHHHHHHH
Confidence 3445566777 89999999999998766 555443 233445555544554433 33344433
No 389
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=89.77 E-value=1.2 Score=45.12 Aligned_cols=22 Identities=32% Similarity=0.545 Sum_probs=18.5
Q ss_pred HcCCeEEEEcCCCchHHhHHHH
Q 002521 263 ARNQVIVISGETGCGKTTQLPQ 284 (913)
Q Consensus 263 ~~~~~vII~apTGSGKTt~~~~ 284 (913)
..++.+.|.|+.||||||.+-.
T Consensus 26 ~~Ge~~~i~G~nGsGKStLl~~ 47 (178)
T cd03247 26 KQGEKIALLGRSGSGKSTLLQL 47 (178)
T ss_pred cCCCEEEEECCCCCCHHHHHHH
Confidence 4788999999999999985543
No 390
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=89.75 E-value=0.22 Score=53.65 Aligned_cols=26 Identities=31% Similarity=0.606 Sum_probs=19.4
Q ss_pred cCCeEEEEcCCCchHHhHHHHHHHHHH
Q 002521 264 RNQVIVISGETGCGKTTQLPQYILESE 290 (913)
Q Consensus 264 ~~~~vII~apTGSGKTt~~~~~ile~~ 290 (913)
...-|+|+|||||||||...- +++.+
T Consensus 124 ~~GLILVTGpTGSGKSTTlAa-mId~i 149 (353)
T COG2805 124 PRGLILVTGPTGSGKSTTLAA-MIDYI 149 (353)
T ss_pred CCceEEEeCCCCCcHHHHHHH-HHHHH
Confidence 345789999999999987664 34444
No 391
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=89.69 E-value=0.44 Score=46.52 Aligned_cols=77 Identities=17% Similarity=0.074 Sum_probs=47.1
Q ss_pred HHHhccCCCCcc---EEEEecch--hhhcCCCCC--eEEEEeCCCCcceeecCCCC-----------CCc--CCccccCH
Q 002521 575 KFIFEKAPPNIR---KIVLATNM--AEASITIND--IVFVVDCGKAKETTYDALNN-----------TPC--LLPSWISQ 634 (913)
Q Consensus 575 ~~v~~~f~~g~~---kVLVATni--ae~GIdIp~--v~~VId~g~~k~~~yd~~~~-----------~~~--l~~~~iSk 634 (913)
..+++.|+...- .|++++.- +.+|||+|+ ++.||-.|+|-....|+... ... ....+-..
T Consensus 34 ~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 113 (142)
T smart00491 34 EELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPFPNPDSPILRARLEYLDEKGGIRPFDEVYLFDAM 113 (142)
T ss_pred HHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 456666655332 68888876 899999997 48888889885433222200 000 01112233
Q ss_pred hhHHHHhcccCCCCCcE
Q 002521 635 ASARQRRGRAGRVQPGQ 651 (913)
Q Consensus 635 a~~~QR~GRAGR~~~G~ 651 (913)
-...|-+||+=|.....
T Consensus 114 ~~~~Qa~GR~iR~~~D~ 130 (142)
T smart00491 114 RALAQAIGRAIRHKNDY 130 (142)
T ss_pred HHHHHHhCccccCccce
Confidence 46679999999985433
No 392
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=89.57 E-value=0.68 Score=57.30 Aligned_cols=68 Identities=18% Similarity=0.218 Sum_probs=54.9
Q ss_pred cCCCcEEEEcCChHHHHHHHHHHHcCCCCCCCCCeEEEEecCCCChHHHHHHhccCCCCccEEEEecch
Q 002521 526 ECPGAVLVFMTGWEDISCLRDQLKSHPLLGDPNRVLLLTCHGSMPTSEQKFIFEKAPPNIRKIVLATNM 594 (913)
Q Consensus 526 ~~~g~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~g~~kVLVATni 594 (913)
..++++++.+||..-+..+++.|..........+..+. +||.|+..+++.+++++.+|..+|+|+|+.
T Consensus 123 ~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~-yh~~l~~~ekee~le~i~~gdfdIlitTs~ 190 (1187)
T COG1110 123 KKGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVV-YHSALPTKEKEEALERIESGDFDILITTSQ 190 (1187)
T ss_pred hcCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeee-eccccchHHHHHHHHHHhcCCccEEEEeHH
Confidence 35678999999999999998888764322222344455 999999999999999999999999999984
No 393
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=89.42 E-value=1.4 Score=49.22 Aligned_cols=32 Identities=13% Similarity=0.322 Sum_probs=23.3
Q ss_pred HHHHHHHHcCC---eEEEEcCCCchHHhHHHHHHH
Q 002521 256 ERLLQAIARNQ---VIVISGETGCGKTTQLPQYIL 287 (913)
Q Consensus 256 ~~il~~i~~~~---~vII~apTGSGKTt~~~~~il 287 (913)
+.+..++.+++ -.+++||.|.||++.+..+..
T Consensus 12 ~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~ 46 (325)
T PRK06871 12 QQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQ 46 (325)
T ss_pred HHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHH
Confidence 34555665654 678999999999987776553
No 394
>PRK04328 hypothetical protein; Provisional
Probab=89.32 E-value=0.78 Score=49.30 Aligned_cols=38 Identities=21% Similarity=0.330 Sum_probs=28.9
Q ss_pred cCCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEc
Q 002521 264 RNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICT 304 (913)
Q Consensus 264 ~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~ 304 (913)
.+..++|.|++|||||+.+.+++.+.+. +|..+.++-+
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~---~ge~~lyis~ 59 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQ---MGEPGVYVAL 59 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHh---cCCcEEEEEe
Confidence 5789999999999999999999988652 3444544443
No 395
>PF12846 AAA_10: AAA-like domain
Probab=89.31 E-value=0.44 Score=52.09 Aligned_cols=42 Identities=31% Similarity=0.433 Sum_probs=27.6
Q ss_pred CCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHH
Q 002521 265 NQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISA 311 (913)
Q Consensus 265 ~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La 311 (913)
|.+++|.|+||||||+.+-..+.+ .+..+ ..++++=|..+..
T Consensus 1 n~h~~i~G~tGsGKT~~~~~l~~~-~~~~g----~~~~i~D~~g~~~ 42 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLKNLLEQ-LIRRG----PRVVIFDPKGDYS 42 (304)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH-HHHcC----CCEEEEcCCchHH
Confidence 578999999999999888755544 43322 2455555654443
No 396
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=89.30 E-value=0.99 Score=55.85 Aligned_cols=79 Identities=15% Similarity=0.154 Sum_probs=64.8
Q ss_pred CCCcEEEEcCChHHHHHHHHHHHcCCCCCCCCCeEEEEecCCCChHHHHHHhccCCCCccEEEEecch-hhhcCCCCCeE
Q 002521 527 CPGAVLVFMTGWEDISCLRDQLKSHPLLGDPNRVLLLTCHGSMPTSEQKFIFEKAPPNIRKIVLATNM-AEASITINDIV 605 (913)
Q Consensus 527 ~~g~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~g~~kVLVATni-ae~GIdIp~v~ 605 (913)
.+..++|.+|++.-+...++.++... . ..++.+..+||+++..++..++....+|...|||+|.. +...+.+.++.
T Consensus 309 ~g~q~lilaPT~~LA~Q~~~~l~~l~--~-~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v~~~~l~ 385 (681)
T PRK10917 309 AGYQAALMAPTEILAEQHYENLKKLL--E-PLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDVEFHNLG 385 (681)
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHH--h-hcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccchhcccc
Confidence 45689999999999998888887641 1 12578999999999999999999999999999999974 45567788887
Q ss_pred EEE
Q 002521 606 FVV 608 (913)
Q Consensus 606 ~VI 608 (913)
+||
T Consensus 386 lvV 388 (681)
T PRK10917 386 LVI 388 (681)
T ss_pred eEE
Confidence 766
No 397
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=89.23 E-value=0.71 Score=51.31 Aligned_cols=30 Identities=33% Similarity=0.467 Sum_probs=25.3
Q ss_pred HHHcCCeEEEEcCCCchHHhHHHHHHHHHH
Q 002521 261 AIARNQVIVISGETGCGKTTQLPQYILESE 290 (913)
Q Consensus 261 ~i~~~~~vII~apTGSGKTt~~~~~ile~~ 290 (913)
-+..+..+.|.||+|||||+.+.+++.+..
T Consensus 51 Glp~G~iteI~G~~GsGKTtLaL~~~~~~~ 80 (321)
T TIGR02012 51 GLPRGRIIEIYGPESSGKTTLALHAIAEAQ 80 (321)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 345678999999999999999998887754
No 398
>PRK05973 replicative DNA helicase; Provisional
Probab=89.20 E-value=0.62 Score=49.51 Aligned_cols=60 Identities=18% Similarity=0.279 Sum_probs=40.6
Q ss_pred HHHHHHHHHcCCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHHHH
Q 002521 255 KERLLQAIARNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVSA 320 (913)
Q Consensus 255 q~~il~~i~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv~~ 320 (913)
.+++..-+..+..++|.|++|+|||+.+.+++.+.+. .|..+.++-+. +-..++.+++..
T Consensus 54 ~~~l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~---~Ge~vlyfSlE---es~~~i~~R~~s 113 (237)
T PRK05973 54 AEELFSQLKPGDLVLLGARPGHGKTLLGLELAVEAMK---SGRTGVFFTLE---YTEQDVRDRLRA 113 (237)
T ss_pred HHHhcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHh---cCCeEEEEEEe---CCHHHHHHHHHH
Confidence 3456667778999999999999999999999887652 23333333322 224555666543
No 399
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=89.18 E-value=0.89 Score=51.80 Aligned_cols=29 Identities=34% Similarity=0.494 Sum_probs=24.2
Q ss_pred HHcCCeEEEEcCCCchHHhHHHHHHHHHH
Q 002521 262 IARNQVIVISGETGCGKTTQLPQYILESE 290 (913)
Q Consensus 262 i~~~~~vII~apTGSGKTt~~~~~ile~~ 290 (913)
+..+..++|.|++|+|||+.+.+++....
T Consensus 79 i~~GslvLI~G~pG~GKStLllq~a~~~a 107 (372)
T cd01121 79 LVPGSVILIGGDPGIGKSTLLLQVAARLA 107 (372)
T ss_pred ccCCeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 44578999999999999999998876543
No 400
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=89.13 E-value=0.31 Score=45.67 Aligned_cols=20 Identities=45% Similarity=0.682 Sum_probs=16.4
Q ss_pred eEEEEcCCCchHHhHHHHHH
Q 002521 267 VIVISGETGCGKTTQLPQYI 286 (913)
Q Consensus 267 ~vII~apTGSGKTt~~~~~i 286 (913)
+++|+|++||||||.+-...
T Consensus 1 vI~I~G~~gsGKST~a~~La 20 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELA 20 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHH
Confidence 47899999999999776543
No 401
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=89.08 E-value=0.78 Score=52.16 Aligned_cols=42 Identities=26% Similarity=0.246 Sum_probs=26.2
Q ss_pred HcCCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchh
Q 002521 263 ARNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPR 307 (913)
Q Consensus 263 ~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPr 307 (913)
..+..++|+|||||||||.+-. +++.+.... +..+|+.+.-.
T Consensus 147 ~~~GlilI~G~TGSGKTT~l~a-l~~~i~~~~--~~~~IvtiEdp 188 (372)
T TIGR02525 147 PAAGLGLICGETGSGKSTLAAS-IYQHCGETY--PDRKIVTYEDP 188 (372)
T ss_pred hcCCEEEEECCCCCCHHHHHHH-HHHHHHhcC--CCceEEEEecC
Confidence 3566889999999999987743 444443211 23456664433
No 402
>PF05894 Podovirus_Gp16: Podovirus DNA encapsidation protein (Gp16); InterPro: IPR008784 This family consists of several DNA encapsidation protein (Gp16) sequences from the phi-29-like viruses. Gene product 16 catalyses the in vivo and in vitro genome-encapsidation reaction [].; GO: 0005524 ATP binding, 0019069 viral capsid assembly
Probab=89.05 E-value=5.4 Score=43.58 Aligned_cols=133 Identities=20% Similarity=0.219 Sum_probs=75.5
Q ss_pred CCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchh----HHHHHHHHHHHHHHhCCCcccEeeeEEeccccC
Q 002521 265 NQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPR----RISAMAVSERVSAERGEPLGETVGYKVRLEGMK 340 (913)
Q Consensus 265 ~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPr----r~La~qva~rv~~~~~~~~g~~vGy~v~~e~~~ 340 (913)
+-.-.|.|.-|-|||.++--.+++..++.+. ..|++--. ..++......+++++...--...|-.+-.+
T Consensus 17 ~~~~~viG~RgiGKtya~k~~~i~df~~~G~----qfiyLRr~k~E~~~~~n~~f~dv~~~f~~~~F~vk~~k~~id--- 89 (333)
T PF05894_consen 17 RILNFVIGARGIGKTYALKKKLIKDFIEYGE----QFIYLRRYKTELDKMKNKFFNDVQQEFPNNEFEVKGNKIYID--- 89 (333)
T ss_pred ceEEEEEecccccchhHHHHHHHHHHHhcCC----EEEEEEecchHHHHHhhHHHHHHHHhCCCCcEEEEccEEEEC---
Confidence 3334566999999999999998888886543 23331111 122333344444443221111222111111
Q ss_pred CCCceEEEEecHHHHHHHhcCCCCCCceEEEecccc-ccCc------chHHHHHHHHHhCccCccceEEEeccc
Q 002521 341 GKNTHLLFCTSGILLRRLLSDHNLNGVTHVFVDEIH-ERGM------NEDFLLIVLKDLLPRRRDLRLILMSAT 407 (913)
Q Consensus 341 ~~~~~Ivv~T~g~Ll~~l~~~~~L~~~s~IIIDEaH-er~~------~~d~ll~llk~ll~~~~~~kiIlmSAT 407 (913)
.-.|-+.+|=.-...+ .+....++.+||+||+- |++- ..+.++.++..+-+.+.+++++++|--
T Consensus 90 --gk~~g~~~~Ls~~q~~-Ks~~Yp~V~~IvfDEfi~ek~~~~y~~nEv~~Lln~i~TV~R~rd~i~vicl~Na 160 (333)
T PF05894_consen 90 --GKLIGYFIPLSGWQKL-KSSSYPNVYTIVFDEFIIEKSNWRYIPNEVKALLNFIDTVFRFRDRIRVICLSNA 160 (333)
T ss_pred --CeEEEEEEecchhhhc-ccCCCCcEEEEEEEEEEecCcccCCCchHHHHHHHHHHHHhhcccceEEEEEecc
Confidence 2234344442222222 23478899999999998 4432 234466667777788899999999874
No 403
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=88.92 E-value=1.9 Score=53.91 Aligned_cols=23 Identities=30% Similarity=0.417 Sum_probs=18.3
Q ss_pred CCeEEEEcCCCchHHhHHHHHHH
Q 002521 265 NQVIVISGETGCGKTTQLPQYIL 287 (913)
Q Consensus 265 ~~~vII~apTGSGKTt~~~~~il 287 (913)
..++++.||+|+|||+.+-....
T Consensus 203 ~~n~lL~G~pG~GKT~l~~~la~ 225 (731)
T TIGR02639 203 KNNPLLVGEPGVGKTAIAEGLAL 225 (731)
T ss_pred CCceEEECCCCCCHHHHHHHHHH
Confidence 45899999999999987654443
No 404
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=88.84 E-value=3.5 Score=51.34 Aligned_cols=22 Identities=27% Similarity=0.397 Sum_probs=17.7
Q ss_pred CCeEEEEcCCCchHHhHHHHHH
Q 002521 265 NQVIVISGETGCGKTTQLPQYI 286 (913)
Q Consensus 265 ~~~vII~apTGSGKTt~~~~~i 286 (913)
..++++.||+|+|||+.+-.+.
T Consensus 207 ~~n~LLvGppGvGKT~lae~la 228 (758)
T PRK11034 207 KNNPLLVGESGVGKTAIAEGLA 228 (758)
T ss_pred CCCeEEECCCCCCHHHHHHHHH
Confidence 5688999999999998765443
No 405
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=88.77 E-value=0.8 Score=51.08 Aligned_cols=29 Identities=28% Similarity=0.371 Sum_probs=24.4
Q ss_pred HHcCCeEEEEcCCCchHHhHHHHHHHHHH
Q 002521 262 IARNQVIVISGETGCGKTTQLPQYILESE 290 (913)
Q Consensus 262 i~~~~~vII~apTGSGKTt~~~~~ile~~ 290 (913)
+..+.++.|+|++|||||+...+++....
T Consensus 99 i~~g~vtei~G~~GsGKT~l~~~~~~~~~ 127 (317)
T PRK04301 99 IETQSITEFYGEFGSGKTQICHQLAVNVQ 127 (317)
T ss_pred ccCCcEEEEECCCCCCHhHHHHHHHHHhc
Confidence 44578999999999999999998887654
No 406
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=88.68 E-value=0.34 Score=50.11 Aligned_cols=20 Identities=35% Similarity=0.722 Sum_probs=16.5
Q ss_pred CeEEEEcCCCchHHhHHHHH
Q 002521 266 QVIVISGETGCGKTTQLPQY 285 (913)
Q Consensus 266 ~~vII~apTGSGKTt~~~~~ 285 (913)
..++|+|||||||||.+-..
T Consensus 2 GlilI~GptGSGKTTll~~l 21 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAM 21 (198)
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 36899999999999987543
No 407
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2.7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....
Probab=88.66 E-value=0.77 Score=46.58 Aligned_cols=37 Identities=30% Similarity=0.430 Sum_probs=25.2
Q ss_pred CeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchh
Q 002521 266 QVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPR 307 (913)
Q Consensus 266 ~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPr 307 (913)
+..++.||-+||||+.+..-+..... .+ .+++++-|.
T Consensus 2 ~l~~i~GpM~sGKS~eLi~~~~~~~~---~~--~~v~~~kp~ 38 (176)
T PF00265_consen 2 KLEFITGPMFSGKSTELIRRIHRYEI---AG--KKVLVFKPA 38 (176)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHH---TT---EEEEEEES
T ss_pred EEEEEECCcCChhHHHHHHHHHHHHh---CC--CeEEEEEec
Confidence 45788999999999988877654332 22 256665574
No 408
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=88.63 E-value=0.59 Score=52.76 Aligned_cols=21 Identities=38% Similarity=0.702 Sum_probs=18.0
Q ss_pred cCCeEEEEcCCCchHHhHHHH
Q 002521 264 RNQVIVISGETGCGKTTQLPQ 284 (913)
Q Consensus 264 ~~~~vII~apTGSGKTt~~~~ 284 (913)
.+..++|+|||||||||.+-.
T Consensus 121 ~~g~ili~G~tGSGKTT~l~a 141 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTLAS 141 (343)
T ss_pred cCcEEEEECCCCCCHHHHHHH
Confidence 467899999999999987754
No 409
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=88.59 E-value=0.79 Score=49.50 Aligned_cols=57 Identities=25% Similarity=0.331 Sum_probs=38.1
Q ss_pred HHcCCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHHHHHhCCC
Q 002521 262 IARNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVSAERGEP 325 (913)
Q Consensus 262 i~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv~~~~~~~ 325 (913)
+..+.+++|.|++|||||+.+.+++.+.+- .|..|..+ -+.+...++.+.+.. +|..
T Consensus 20 ~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~---~ge~vlyv---s~~e~~~~l~~~~~~-~g~d 76 (260)
T COG0467 20 LPRGSVVLITGPPGTGKTIFALQFLYEGAR---EGEPVLYV---STEESPEELLENARS-FGWD 76 (260)
T ss_pred CcCCcEEEEEcCCCCcHHHHHHHHHHHHHh---cCCcEEEE---EecCCHHHHHHHHHH-cCCC
Confidence 446889999999999999999999988663 24444333 344555555555543 4433
No 410
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=88.55 E-value=0.56 Score=50.84 Aligned_cols=34 Identities=24% Similarity=0.319 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHcCCeEEEEcCCCchHHhHHHHHH
Q 002521 253 KEKERLLQAIARNQVIVISGETGCGKTTQLPQYI 286 (913)
Q Consensus 253 ~~q~~il~~i~~~~~vII~apTGSGKTt~~~~~i 286 (913)
...+.++..+..+..+++.||+|+|||+.+-.+.
T Consensus 9 ~l~~~~l~~l~~g~~vLL~G~~GtGKT~lA~~la 42 (262)
T TIGR02640 9 RVTSRALRYLKSGYPVHLRGPAGTGKTTLAMHVA 42 (262)
T ss_pred HHHHHHHHHHhcCCeEEEEcCCCCCHHHHHHHHH
Confidence 3456677888899999999999999998876543
No 411
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=88.54 E-value=0.36 Score=58.06 Aligned_cols=71 Identities=20% Similarity=0.169 Sum_probs=51.2
Q ss_pred CCCcHHHHHHHHHHHHcC--CeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHH-HHHHHHh
Q 002521 248 SLPSFKEKERLLQAIARN--QVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVS-ERVSAER 322 (913)
Q Consensus 248 ~lP~~~~q~~il~~i~~~--~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva-~rv~~~~ 322 (913)
..-..+|+.++++++... +.|++.+++-+|||..+.-++...+ ....+.+++++||..+|.... .+|...+
T Consensus 14 ~~~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n~~g~~i----~~~P~~~l~v~Pt~~~a~~~~~~rl~Pmi 87 (557)
T PF05876_consen 14 RTDRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLNWIGYSI----DQDPGPMLYVQPTDDAAKDFSKERLDPMI 87 (557)
T ss_pred CCCCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHhhceEEE----EeCCCCEEEEEEcHHHHHHHHHHHHHHHH
Confidence 345678899999999766 4788899999999986555443322 112357888899999998875 5565443
No 412
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=88.49 E-value=1.5 Score=53.28 Aligned_cols=122 Identities=16% Similarity=0.051 Sum_probs=80.0
Q ss_pred CCCcEEEEcCChHHHHHHHHHHHcCCCCCCCCCeEEEEecCCCChHHHHHHhccCCC----CccEEEEecchhhhcCCC-
Q 002521 527 CPGAVLVFMTGWEDISCLRDQLKSHPLLGDPNRVLLLTCHGSMPTSEQKFIFEKAPP----NIRKIVLATNMAEASITI- 601 (913)
Q Consensus 527 ~~g~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~----g~~kVLVATniae~GIdI- 601 (913)
.+|.+||.+.+...++.+++.|.... .+. +.+.|..+. +...++.|+. |...||++|+.+-+|||+
T Consensus 469 ~~G~~lvLfTS~~~~~~~~~~l~~~l------~~~-~l~qg~~~~--~~~l~~~f~~~~~~~~~~vL~gt~sfweGvDv~ 539 (636)
T TIGR03117 469 AQGGTLVLTTAFSHISAIGQLVELGI------PAE-IVIQSEKNR--LASAEQQFLALYANGIQPVLIAAGGAWTGIDLT 539 (636)
T ss_pred cCCCEEEEechHHHHHHHHHHHHhhc------CCC-EEEeCCCcc--HHHHHHHHHHhhcCCCCcEEEeCCccccccccC
Confidence 46789999999999999999997641 222 345665532 2345555654 578999999999999999
Q ss_pred -------C--CeEEEEeCCCCcceeecCC--------CCCCcCCccccCHhhHHHHhcccCCC--C--CcEEEEecCh
Q 002521 602 -------N--DIVFVVDCGKAKETTYDAL--------NNTPCLLPSWISQASARQRRGRAGRV--Q--PGQCYHLYPR 658 (913)
Q Consensus 602 -------p--~v~~VId~g~~k~~~yd~~--------~~~~~l~~~~iSka~~~QR~GRAGR~--~--~G~c~~L~t~ 658 (913)
| .++.||..-+|... -|+. .+-..+...|-..-.+.|-+||.=|. - .|....|=++
T Consensus 540 ~~~~~p~~G~~Ls~ViI~kLPF~~-~dp~a~~~~~~~~g~~~f~~~p~a~i~lkQg~GRLIR~~~D~~~G~i~ilD~R 616 (636)
T TIGR03117 540 HKPVSPDKDNLLTDLIITCAPFGL-NRSLSMLKRIRKTSVRPWEIINESLMMLRQGLGRLVRHPDMPQNRRIHMLDGR 616 (636)
T ss_pred CccCCCCCCCcccEEEEEeCCCCc-CChHHHHHHHHhcCCChHhhhHHHHHHHHHhcCceeecCCCcCceEEEEEeCC
Confidence 2 36888877777442 2221 11222222233445678899999988 3 5666666444
No 413
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=88.40 E-value=1.2 Score=50.02 Aligned_cols=60 Identities=17% Similarity=0.056 Sum_probs=34.1
Q ss_pred EEEEecHHHHHHHhcCCCCCCceEEEeccccccCcchHHHHHHHHHhCccCccceEEEeccc
Q 002521 346 LLFCTSGILLRRLLSDHNLNGVTHVFVDEIHERGMNEDFLLIVLKDLLPRRRDLRLILMSAT 407 (913)
Q Consensus 346 Ivv~T~g~Ll~~l~~~~~L~~~s~IIIDEaHer~~~~d~ll~llk~ll~~~~~~kiIlmSAT 407 (913)
|.|-....|.+.+...+....+.++|||+||.++. .-.-.+||.+=.-.++..+|+.|..
T Consensus 112 I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~--~AaNaLLKtLEEPp~~t~fiL~t~~ 171 (342)
T PRK06964 112 IKIEQVRALLDFCGVGTHRGGARVVVLYPAEALNV--AAANALLKTLEEPPPGTVFLLVSAR 171 (342)
T ss_pred cCHHHHHHHHHHhccCCccCCceEEEEechhhcCH--HHHHHHHHHhcCCCcCcEEEEEECC
Confidence 44444444555555556678899999999996643 3334455543332333344444443
No 414
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=88.19 E-value=0.73 Score=45.55 Aligned_cols=22 Identities=27% Similarity=0.570 Sum_probs=18.3
Q ss_pred HcCCeEEEEcCCCchHHhHHHH
Q 002521 263 ARNQVIVISGETGCGKTTQLPQ 284 (913)
Q Consensus 263 ~~~~~vII~apTGSGKTt~~~~ 284 (913)
..++.+.|.|++|+||||.+-.
T Consensus 23 ~~g~~~~i~G~nGsGKStll~~ 44 (157)
T cd00267 23 KAGEIVALVGPNGSGKSTLLRA 44 (157)
T ss_pred cCCCEEEEECCCCCCHHHHHHH
Confidence 4678999999999999985543
No 415
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=88.16 E-value=0.77 Score=51.60 Aligned_cols=29 Identities=17% Similarity=0.195 Sum_probs=23.5
Q ss_pred HcCCeEEEEcCCCchHHhHHHHHHHHHHH
Q 002521 263 ARNQVIVISGETGCGKTTQLPQYILESEI 291 (913)
Q Consensus 263 ~~~~~vII~apTGSGKTt~~~~~ile~~~ 291 (913)
..+.++.|.|++|||||+...++++...+
T Consensus 124 ~~G~ItEI~G~~GsGKTql~lqlav~~ql 152 (344)
T PLN03187 124 ETRCITEAFGEFRSGKTQLAHTLCVTTQL 152 (344)
T ss_pred CCCeEEEEecCCCCChhHHHHHHHHHHhc
Confidence 34578899999999999988888776543
No 416
>COG1074 RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair]
Probab=88.14 E-value=0.64 Score=60.75 Aligned_cols=61 Identities=21% Similarity=0.304 Sum_probs=49.4
Q ss_pred HcCCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHHHHHhC
Q 002521 263 ARNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVSAERG 323 (913)
Q Consensus 263 ~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv~~~~~ 323 (913)
..+++++|.|..|||||.++..-+++.++..+.-..-.|+|++-|+.+|..+..||.+-+.
T Consensus 14 ~~~~~~lveASAGSGKT~vL~~r~lrlLl~~~~~~v~~ILvvTFT~aAa~Emk~RI~~~L~ 74 (1139)
T COG1074 14 PPGQSVLVEASAGTGKTFVLAERVLRLLLEGGPLDVDEILVVTFTKAAAAEMKERIRDRLK 74 (1139)
T ss_pred CCCCcEEEEEcCCCCchhHHHHHHHHHHhhcCCCChhHeeeeeccHHHHHHHHHHHHHHHH
Confidence 4677999999999999999888888887764312334799999999999999999976543
No 417
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=88.04 E-value=0.37 Score=51.71 Aligned_cols=22 Identities=36% Similarity=0.382 Sum_probs=18.7
Q ss_pred HHcCCeEEEEcCCCchHHhHHH
Q 002521 262 IARNQVIVISGETGCGKTTQLP 283 (913)
Q Consensus 262 i~~~~~vII~apTGSGKTt~~~ 283 (913)
+..|+.++|.||.|+||||.+-
T Consensus 13 i~~Gqr~~I~G~~G~GKTTLlr 34 (249)
T cd01128 13 IGKGQRGLIVAPPKAGKTTLLQ 34 (249)
T ss_pred cCCCCEEEEECCCCCCHHHHHH
Confidence 3578999999999999998553
No 418
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=87.99 E-value=2.9 Score=46.57 Aligned_cols=31 Identities=29% Similarity=0.493 Sum_probs=22.2
Q ss_pred HHHHHHHHcCC---eEEEEcCCCchHHhHHHHHH
Q 002521 256 ERLLQAIARNQ---VIVISGETGCGKTTQLPQYI 286 (913)
Q Consensus 256 ~~il~~i~~~~---~vII~apTGSGKTt~~~~~i 286 (913)
+.+...+..++ ..+++||-|+|||+.+-.+.
T Consensus 14 ~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a 47 (313)
T PRK05564 14 NRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIA 47 (313)
T ss_pred HHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHH
Confidence 34455555543 56899999999998877665
No 419
>PRK05580 primosome assembly protein PriA; Validated
Probab=87.98 E-value=0.94 Score=55.93 Aligned_cols=74 Identities=12% Similarity=0.158 Sum_probs=61.0
Q ss_pred CCcEEEEcCChHHHHHHHHHHHcCCCCCCCCCeEEEEecCCCChHHHHHHhccCCCCccEEEEecchhhhcCCCCCeEEE
Q 002521 528 PGAVLVFMTGWEDISCLRDQLKSHPLLGDPNRVLLLTCHGSMPTSEQKFIFEKAPPNIRKIVLATNMAEASITINDIVFV 607 (913)
Q Consensus 528 ~g~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~g~~kVLVATniae~GIdIp~v~~V 607 (913)
++.+||.+|+++-+..+.+.|+... +..+..+||+++..+|..++.....|..+|||+|.-+- -+.+.++.+|
T Consensus 190 g~~vLvLvPt~~L~~Q~~~~l~~~f------g~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal-~~p~~~l~li 262 (679)
T PRK05580 190 GKQALVLVPEIALTPQMLARFRARF------GAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSAL-FLPFKNLGLI 262 (679)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHh------CCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHh-cccccCCCEE
Confidence 5689999999999999999998741 34688999999999999999999999999999997543 2556677655
Q ss_pred E
Q 002521 608 V 608 (913)
Q Consensus 608 I 608 (913)
|
T Consensus 263 V 263 (679)
T PRK05580 263 I 263 (679)
T ss_pred E
Confidence 5
No 420
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=87.90 E-value=2 Score=47.94 Aligned_cols=144 Identities=21% Similarity=0.271 Sum_probs=74.8
Q ss_pred cCCCcHHHHHHHHHHHHcCCe------EEEEcCCCchHHhHHHHHHHHHHHHhCCCCceE-EEEcchhHHHHHHHHHHHH
Q 002521 247 KSLPSFKEKERLLQAIARNQV------IVISGETGCGKTTQLPQYILESEIESGRGAFCN-IICTQPRRISAMAVSERVS 319 (913)
Q Consensus 247 ~~lP~~~~q~~il~~i~~~~~------vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~-Ilv~qPrr~La~qva~rv~ 319 (913)
..+|....|-..+..+..+.. ++|-|.+|+|||...-+++-.. +....... +=|. -.+.+-.++...+.
T Consensus 6 ~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~---n~~~vw~n~~ecf-t~~~lle~IL~~~~ 81 (438)
T KOG2543|consen 6 PNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKL---NLENVWLNCVECF-TYAILLEKILNKSQ 81 (438)
T ss_pred cCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhc---CCcceeeehHHhc-cHHHHHHHHHHHhc
Confidence 456778888888888877653 4889999999998777665432 01110000 1111 33455555544442
Q ss_pred HHhCCCcccEeeeEEeccccCCCCceEEEEecHHHHHHHhcCC---CCCCceEEEeccccc-cCcchHHHHHHHH--HhC
Q 002521 320 AERGEPLGETVGYKVRLEGMKGKNTHLLFCTSGILLRRLLSDH---NLNGVTHVFVDEIHE-RGMNEDFLLIVLK--DLL 393 (913)
Q Consensus 320 ~~~~~~~g~~vGy~v~~e~~~~~~~~Ivv~T~g~Ll~~l~~~~---~L~~~s~IIIDEaHe-r~~~~d~ll~llk--~ll 393 (913)
....-|..++. ....++ .+...+.+-+ ..+.--+||+|-|+. |++.+-++..+++ .++
T Consensus 82 ------~~d~dg~~~~~-------~~en~~---d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~ 145 (438)
T KOG2543|consen 82 ------LADKDGDKVEG-------DAENFS---DFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELL 145 (438)
T ss_pred ------cCCCchhhhhh-------HHHHHH---HHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHh
Confidence 00111111110 011111 1223332211 234556899999994 5566655555544 233
Q ss_pred ccCccceEEEeccccCHHH
Q 002521 394 PRRRDLRLILMSATLNAEL 412 (913)
Q Consensus 394 ~~~~~~kiIlmSATl~~~~ 412 (913)
+. +.-.|++|+++....
T Consensus 146 ~~--~~i~iils~~~~e~~ 162 (438)
T KOG2543|consen 146 NE--PTIVIILSAPSCEKQ 162 (438)
T ss_pred CC--CceEEEEeccccHHH
Confidence 32 235778899986553
No 421
>PRK10436 hypothetical protein; Provisional
Probab=87.74 E-value=0.69 Score=54.13 Aligned_cols=30 Identities=30% Similarity=0.497 Sum_probs=21.2
Q ss_pred HHHHHH-HHH-cCCeEEEEcCCCchHHhHHHH
Q 002521 255 KERLLQ-AIA-RNQVIVISGETGCGKTTQLPQ 284 (913)
Q Consensus 255 q~~il~-~i~-~~~~vII~apTGSGKTt~~~~ 284 (913)
+.+.+. .+. .+..++|+|||||||||....
T Consensus 206 ~~~~l~~~~~~~~GliLvtGpTGSGKTTtL~a 237 (462)
T PRK10436 206 QLAQFRQALQQPQGLILVTGPTGSGKTVTLYS 237 (462)
T ss_pred HHHHHHHHHHhcCCeEEEECCCCCChHHHHHH
Confidence 334343 443 566899999999999987643
No 422
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=87.67 E-value=1.8 Score=50.78 Aligned_cols=32 Identities=31% Similarity=0.344 Sum_probs=22.9
Q ss_pred HHHHHHHcCC---eEEEEcCCCchHHhHHHHHHHH
Q 002521 257 RLLQAIARNQ---VIVISGETGCGKTTQLPQYILE 288 (913)
Q Consensus 257 ~il~~i~~~~---~vII~apTGSGKTt~~~~~ile 288 (913)
.+...+..++ .+++.||.|+|||+.+-.++-.
T Consensus 28 ~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~ 62 (451)
T PRK06305 28 VLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKA 62 (451)
T ss_pred HHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHH
Confidence 3444555553 5789999999999988766543
No 423
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=87.62 E-value=4.7 Score=43.63 Aligned_cols=39 Identities=21% Similarity=0.261 Sum_probs=25.0
Q ss_pred hhhHHhhhcCCCcHHHHHHHHHHHHcCC-----eEEEEcCCCchHHhHHH
Q 002521 239 GNKMLDFRKSLPSFKEKERLLQAIARNQ-----VIVISGETGCGKTTQLP 283 (913)
Q Consensus 239 ~~~l~~~r~~lP~~~~q~~il~~i~~~~-----~vII~apTGSGKTt~~~ 283 (913)
.++.++.---||+. ++.+..++ -+++-||+|+||++.+-
T Consensus 141 AKeALKEAVILPIK------FPqlFtGkR~PwrgiLLyGPPGTGKSYLAK 184 (439)
T KOG0739|consen 141 AKEALKEAVILPIK------FPQLFTGKRKPWRGILLYGPPGTGKSYLAK 184 (439)
T ss_pred HHHHHHhheeeccc------chhhhcCCCCcceeEEEeCCCCCcHHHHHH
Confidence 44555556667763 22333433 58999999999996543
No 424
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=87.49 E-value=3.2 Score=51.38 Aligned_cols=21 Identities=29% Similarity=0.403 Sum_probs=17.4
Q ss_pred CeEEEEcCCCchHHhHHHHHH
Q 002521 266 QVIVISGETGCGKTTQLPQYI 286 (913)
Q Consensus 266 ~~vII~apTGSGKTt~~~~~i 286 (913)
..+++.||+|+||||.+-.+.
T Consensus 53 ~slLL~GPpGtGKTTLA~aIA 73 (725)
T PRK13341 53 GSLILYGPPGVGKTTLARIIA 73 (725)
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 378999999999998776544
No 425
>PHA00149 DNA encapsidation protein
Probab=87.41 E-value=6.5 Score=42.40 Aligned_cols=132 Identities=20% Similarity=0.246 Sum_probs=76.4
Q ss_pred EEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchh-HHHHHHHHHHHHHHhCCCcccEeeeEEeccccCCCCceEE
Q 002521 269 VISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPR-RISAMAVSERVSAERGEPLGETVGYKVRLEGMKGKNTHLL 347 (913)
Q Consensus 269 II~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPr-r~La~qva~rv~~~~~~~~g~~vGy~v~~e~~~~~~~~Iv 347 (913)
.|.|.-|-|||.++--.+++.++..+. ..+++--. -++.. ....++.+.-.... .-+.+......-..-.|.
T Consensus 21 fviG~RgiGKTya~k~~~~k~~i~kge----qfiYLRr~k~El~~-k~~Ff~d~~~~~~~--~~F~Vkg~ki~~~~k~ig 93 (331)
T PHA00149 21 FVIGARGIGKTYALKKYLIKRFIKKGE----QFIYLRRYKSELKK-KSKFFADIAQEFPN--TEFEVKGRKIYIKGKLIG 93 (331)
T ss_pred EEEeccccchhhHHHHHHHHHHHhcCc----EEEEEEecchhhhh-hhhhhHHHHHhCCC--CceEEEccEEEEcCeEEE
Confidence 456999999999999998888876543 34442111 12221 23334333322111 111111111111223455
Q ss_pred EEecHHHHHHHhcCCCCCCceEEEeccccc-c------CcchHHHHHHHHHhCccCccceEEEecccc
Q 002521 348 FCTSGILLRRLLSDHNLNGVTHVFVDEIHE-R------GMNEDFLLIVLKDLLPRRRDLRLILMSATL 408 (913)
Q Consensus 348 v~T~g~Ll~~l~~~~~L~~~s~IIIDEaHe-r------~~~~d~ll~llk~ll~~~~~~kiIlmSATl 408 (913)
+.-|=.-+..+. .....++.+|++||+-. + .-+.+.++.++..+.+.+.+++++++|-..
T Consensus 94 y~i~LS~~q~~K-s~~Yp~V~~I~fDEfi~dk~n~~YlpNE~~allnli~tV~R~Re~vr~~~lsNa~ 160 (331)
T PHA00149 94 YAIPLSTWQALK-SSAYPNVSTIFFDEFIREKDNKRYLPNEVDALLNLIDTVFRARERVRCICLSNAV 160 (331)
T ss_pred EEEehhhHHhhc-ccCCCceEEEEeeeeeecCcccccCCchHHHHHHHHHHHHHhhcCeEEEEEcCcc
Confidence 555544444443 33778999999999983 2 233456777777888888899999998765
No 426
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=87.32 E-value=1.1 Score=53.18 Aligned_cols=75 Identities=15% Similarity=0.155 Sum_probs=60.8
Q ss_pred CCCcEEEEcCChHHHHHHHHHHHcCCCCCCCCCeEEEEecCCCChHHHHHHhccCCCCccEEEEecchhhhcCCCCCeEE
Q 002521 527 CPGAVLVFMTGWEDISCLRDQLKSHPLLGDPNRVLLLTCHGSMPTSEQKFIFEKAPPNIRKIVLATNMAEASITINDIVF 606 (913)
Q Consensus 527 ~~g~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~g~~kVLVATniae~GIdIp~v~~ 606 (913)
.++.+||.+|+..-+..+++.|+... +..+..+||+++..+|..++....+|..+|||+|..+-- ..++++.+
T Consensus 24 ~g~~vLvlvP~i~L~~Q~~~~l~~~f------~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsalf-~p~~~l~l 96 (505)
T TIGR00595 24 LGKSVLVLVPEIALTPQMIQRFKYRF------GSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSALF-LPFKNLGL 96 (505)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHHh------CCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHHc-CcccCCCE
Confidence 35679999999999999999998742 345778999999999999999889999999999976442 45667765
Q ss_pred EE
Q 002521 607 VV 608 (913)
Q Consensus 607 VI 608 (913)
||
T Consensus 97 II 98 (505)
T TIGR00595 97 II 98 (505)
T ss_pred EE
Confidence 55
No 427
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=87.30 E-value=3 Score=48.45 Aligned_cols=36 Identities=28% Similarity=0.516 Sum_probs=25.2
Q ss_pred eEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHH
Q 002521 267 VIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRI 309 (913)
Q Consensus 267 ~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~ 309 (913)
.+++.||.|||||..+....+. ..-+..+|+- |...
T Consensus 540 SvLl~Gp~~sGKTaLAA~iA~~-----S~FPFvKiiS--pe~m 575 (744)
T KOG0741|consen 540 SVLLEGPPGSGKTALAAKIALS-----SDFPFVKIIS--PEDM 575 (744)
T ss_pred EEEEecCCCCChHHHHHHHHhh-----cCCCeEEEeC--hHHc
Confidence 6899999999999887776654 2334555554 7543
No 428
>PHA02244 ATPase-like protein
Probab=87.29 E-value=1.3 Score=49.94 Aligned_cols=34 Identities=21% Similarity=0.322 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHcCCeEEEEcCCCchHHhHHHHHH
Q 002521 253 KEKERLLQAIARNQVIVISGETGCGKTTQLPQYI 286 (913)
Q Consensus 253 ~~q~~il~~i~~~~~vII~apTGSGKTt~~~~~i 286 (913)
.....+...+..+..+++.||||||||+.+-.+.
T Consensus 107 ~~~~ri~r~l~~~~PVLL~GppGtGKTtLA~aLA 140 (383)
T PHA02244 107 YETADIAKIVNANIPVFLKGGAGSGKNHIAEQIA 140 (383)
T ss_pred HHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHH
Confidence 3455677778889999999999999998776544
No 429
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=87.27 E-value=1.1 Score=47.20 Aligned_cols=29 Identities=28% Similarity=0.469 Sum_probs=24.2
Q ss_pred HHcCCeEEEEcCCCchHHhHHHHHHHHHH
Q 002521 262 IARNQVIVISGETGCGKTTQLPQYILESE 290 (913)
Q Consensus 262 i~~~~~vII~apTGSGKTt~~~~~ile~~ 290 (913)
+..+..++|.|++|+|||+.+.+++.+.+
T Consensus 17 i~~G~~~~i~G~~G~GKT~l~~~~~~~~~ 45 (229)
T TIGR03881 17 IPRGFFVAVTGEPGTGKTIFCLHFAYKGL 45 (229)
T ss_pred CcCCeEEEEECCCCCChHHHHHHHHHHHH
Confidence 34678999999999999999888877654
No 430
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=87.25 E-value=0.59 Score=51.96 Aligned_cols=47 Identities=28% Similarity=0.271 Sum_probs=32.8
Q ss_pred HHHHHHHcCCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHH
Q 002521 257 RLLQAIARNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRI 309 (913)
Q Consensus 257 ~il~~i~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~ 309 (913)
-++.++..+++++++|+|||||||..-..+ ..+ .+..+|+.+.-+.+
T Consensus 135 yL~~~ie~~~siii~G~t~sGKTt~lnall-~~I-----p~~~rivtIEdt~E 181 (312)
T COG0630 135 YLWLAIEARKSIIICGGTASGKTTLLNALL-DFI-----PPEERIVTIEDTPE 181 (312)
T ss_pred HHHHHHHcCCcEEEECCCCCCHHHHHHHHH-HhC-----CchhcEEEEecccc
Confidence 388888999999999999999998765433 222 23446666544433
No 431
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=87.23 E-value=4 Score=45.66 Aligned_cols=22 Identities=23% Similarity=0.264 Sum_probs=17.9
Q ss_pred CeEEEEcCCCchHHhHHHHHHH
Q 002521 266 QVIVISGETGCGKTTQLPQYIL 287 (913)
Q Consensus 266 ~~vII~apTGSGKTt~~~~~il 287 (913)
...++.||.|+|||+.+..+.-
T Consensus 22 hA~Lf~G~~G~GK~~la~~~a~ 43 (325)
T PRK08699 22 NAWLFAGKKGIGKTAFARFAAQ 43 (325)
T ss_pred eEEEeECCCCCCHHHHHHHHHH
Confidence 3688999999999988776543
No 432
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=87.23 E-value=2.2 Score=49.09 Aligned_cols=21 Identities=24% Similarity=0.346 Sum_probs=16.8
Q ss_pred CCeEEEEcCCCchHHhHHHHH
Q 002521 265 NQVIVISGETGCGKTTQLPQY 285 (913)
Q Consensus 265 ~~~vII~apTGSGKTt~~~~~ 285 (913)
...+++.||+|||||+.+-..
T Consensus 165 p~gvLL~GppGtGKT~lAkai 185 (389)
T PRK03992 165 PKGVLLYGPPGTGKTLLAKAV 185 (389)
T ss_pred CCceEEECCCCCChHHHHHHH
Confidence 356899999999999876544
No 433
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=87.20 E-value=3.5 Score=45.81 Aligned_cols=20 Identities=25% Similarity=0.375 Sum_probs=16.3
Q ss_pred HcCCeEEEEcCCCchHHhHH
Q 002521 263 ARNQVIVISGETGCGKTTQL 282 (913)
Q Consensus 263 ~~~~~vII~apTGSGKTt~~ 282 (913)
..-+-|++.||+|+|||+.+
T Consensus 183 ~PPKGVLLYGPPGTGKTLLA 202 (406)
T COG1222 183 DPPKGVLLYGPPGTGKTLLA 202 (406)
T ss_pred CCCCceEeeCCCCCcHHHHH
Confidence 34567999999999999654
No 434
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=87.18 E-value=6.6 Score=44.05 Aligned_cols=100 Identities=13% Similarity=0.101 Sum_probs=44.7
Q ss_pred EEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHH---HHHHHhCCCcccEeeeEEecccc--CCCC
Q 002521 269 VISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSE---RVSAERGEPLGETVGYKVRLEGM--KGKN 343 (913)
Q Consensus 269 II~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~---rv~~~~~~~~g~~vGy~v~~e~~--~~~~ 343 (913)
++.|+.|+|||+.....++..++... ....|+++.....+...+.. .+...... .. ...+....+.. ....
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~~--~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~nG 76 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTRP--PGRRVIIASTYRQARDIFGRFWKGIIELLPS-WF-EIKFNEWNDRKIILPNG 76 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSSS--S--EEEEEESSHHHHHHHHHHHHHHHHTS-T-TT-S--EEEE-SSEEEETTS
T ss_pred CCcCCccccHHHHHHHHHHHHHhhCC--CCcEEEEecCHHHHHHHHHHhHHHHHHHHHH-hc-CcccccCCCCcEEecCc
Confidence 46789999999998887777665432 22355555455555554333 22222222 11 11111111111 1233
Q ss_pred ceEEEEecHH--HHHHHhcCCCCCCceEEEecccc
Q 002521 344 THLLFCTSGI--LLRRLLSDHNLNGVTHVFVDEIH 376 (913)
Q Consensus 344 ~~Ivv~T~g~--Ll~~l~~~~~L~~~s~IIIDEaH 376 (913)
..|.+.+.+. -...+.. ..+++|||||+-
T Consensus 77 ~~i~~~~~~~~~~~~~~~G----~~~~~i~iDE~~ 107 (384)
T PF03237_consen 77 SRIQFRGADSPDSGDNIRG----FEYDLIIIDEAA 107 (384)
T ss_dssp -EEEEES-----SHHHHHT----S--SEEEEESGG
T ss_pred eEEEEeccccccccccccc----cccceeeeeecc
Confidence 4566666432 1222322 568899999976
No 435
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=87.14 E-value=4.2 Score=45.63 Aligned_cols=29 Identities=24% Similarity=0.358 Sum_probs=22.3
Q ss_pred HHHHHHHHHcCCeEEEEcCCCchHHhHHH
Q 002521 255 KERLLQAIARNQVIVISGETGCGKTTQLP 283 (913)
Q Consensus 255 q~~il~~i~~~~~vII~apTGSGKTt~~~ 283 (913)
.+.+-.+...+..|+|.|++|+||++.+-
T Consensus 12 ~~~~~~~a~~~~pVLI~GE~GtGK~~lAr 40 (329)
T TIGR02974 12 LEQVSRLAPLDRPVLIIGERGTGKELIAA 40 (329)
T ss_pred HHHHHHHhCCCCCEEEECCCCChHHHHHH
Confidence 44455555677789999999999998654
No 436
>PRK13764 ATPase; Provisional
Probab=87.11 E-value=0.91 Score=54.60 Aligned_cols=32 Identities=31% Similarity=0.424 Sum_probs=22.9
Q ss_pred HHHHH-HcCCeEEEEcCCCchHHhHHHHHHHHHH
Q 002521 258 LLQAI-ARNQVIVISGETGCGKTTQLPQYILESE 290 (913)
Q Consensus 258 il~~i-~~~~~vII~apTGSGKTt~~~~~ile~~ 290 (913)
+++.+ ..+.+++|+|||||||||.+- .+++.+
T Consensus 249 l~~~l~~~~~~ILIsG~TGSGKTTll~-AL~~~i 281 (602)
T PRK13764 249 LKERLEERAEGILIAGAPGAGKSTFAQ-ALAEFY 281 (602)
T ss_pred HHHHHHhcCCEEEEECCCCCCHHHHHH-HHHHHH
Confidence 34444 446789999999999998764 455544
No 437
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=87.05 E-value=2.1 Score=41.71 Aligned_cols=22 Identities=32% Similarity=0.444 Sum_probs=18.5
Q ss_pred HcCCeEEEEcCCCchHHhHHHH
Q 002521 263 ARNQVIVISGETGCGKTTQLPQ 284 (913)
Q Consensus 263 ~~~~~vII~apTGSGKTt~~~~ 284 (913)
..++.+.|.|+.||||||.+-.
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~ 45 (144)
T cd03221 24 NPGDRIGLVGRNGAGKSTLLKL 45 (144)
T ss_pred CCCCEEEEECCCCCCHHHHHHH
Confidence 4688999999999999986543
No 438
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=87.01 E-value=1.4 Score=44.30 Aligned_cols=21 Identities=33% Similarity=0.559 Sum_probs=18.1
Q ss_pred HcCCeEEEEcCCCchHHhHHH
Q 002521 263 ARNQVIVISGETGCGKTTQLP 283 (913)
Q Consensus 263 ~~~~~vII~apTGSGKTt~~~ 283 (913)
..++.+.|.||.||||||.+-
T Consensus 26 ~~G~~~~l~G~nGsGKstLl~ 46 (171)
T cd03228 26 KPGEKVAIVGPSGSGKSTLLK 46 (171)
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 478899999999999998554
No 439
>KOG2036 consensus Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=86.85 E-value=6.4 Score=47.01 Aligned_cols=147 Identities=20% Similarity=0.280 Sum_probs=85.0
Q ss_pred HHhhhcCCCcHHHHHHHHHHHHc---CCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHH
Q 002521 242 MLDFRKSLPSFKEKERLLQAIAR---NQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERV 318 (913)
Q Consensus 242 l~~~r~~lP~~~~q~~il~~i~~---~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv 318 (913)
+...-+++.-...-.+++++|.. +..+-++|.-|-|||.+.-+.|...+. . ...+|.||.|.-+-...+.+.+
T Consensus 249 Lv~~~kT~dQakav~~f~dai~eK~lr~~vsLtA~RGRGKSAALGlsiA~AVa-~---GysnIyvtSPspeNlkTlFeFv 324 (1011)
T KOG2036|consen 249 LVGLCKTLDQAKAVLTFFDAIVEKTLRSTVSLTASRGRGKSAALGLSIAGAVA-F---GYSNIYVTSPSPENLKTLFEFV 324 (1011)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHhhhcceEEEEecCCCCchhhhhHHHHHHHh-c---CcceEEEcCCChHHHHHHHHHH
Confidence 33333333333333455666644 447788999999999998888876552 1 3568999999999888888887
Q ss_pred HHHhCC-CcccEeeeEEe-------------ccccCCCCceEEEEecHHHHHHHhcCCCCCCceEEEeccccccCcchHH
Q 002521 319 SAERGE-PLGETVGYKVR-------------LEGMKGKNTHLLFCTSGILLRRLLSDHNLNGVTHVFVDEIHERGMNEDF 384 (913)
Q Consensus 319 ~~~~~~-~~g~~vGy~v~-------------~e~~~~~~~~Ivv~T~g~Ll~~l~~~~~L~~~s~IIIDEaHer~~~~d~ 384 (913)
-+-++. ..-..+.|.+- .+-.....-.|-|..|.- ...+....++|||||-.- .
T Consensus 325 ~kGfDaL~Yqeh~Dy~iI~s~np~fkkaivRInifr~hrQtIQYi~P~D-------~~kl~q~eLlVIDEAAAI--P--- 392 (1011)
T KOG2036|consen 325 FKGFDALEYQEHVDYDIIQSTNPDFKKAIVRINIFREHRQTIQYISPHD-------HQKLGQAELLVIDEAAAI--P--- 392 (1011)
T ss_pred HcchhhhcchhhcchhhhhhcChhhhhhEEEEEEeccccceeEeeccch-------hhhccCCcEEEechhhcC--C---
Confidence 663321 11112222211 111111111233333311 115778899999999722 1
Q ss_pred HHHHHHHhCccCccceEEEeccccC
Q 002521 385 LLIVLKDLLPRRRDLRLILMSATLN 409 (913)
Q Consensus 385 ll~llk~ll~~~~~~kiIlmSATl~ 409 (913)
+-+++.++ ..-+++|+.|++
T Consensus 393 -Lplvk~Li----gPylVfmaSTin 412 (1011)
T KOG2036|consen 393 -LPLVKKLI----GPYLVFMASTIN 412 (1011)
T ss_pred -HHHHHHhh----cceeEEEeeccc
Confidence 23455554 236899999986
No 440
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=86.84 E-value=5.4 Score=50.73 Aligned_cols=20 Identities=30% Similarity=0.396 Sum_probs=16.3
Q ss_pred eEEEEcCCCchHHhHHHHHH
Q 002521 267 VIVISGETGCGKTTQLPQYI 286 (913)
Q Consensus 267 ~vII~apTGSGKTt~~~~~i 286 (913)
.+++.||||+|||+.+-...
T Consensus 597 ~~Lf~Gp~GvGKt~lA~~La 616 (852)
T TIGR03346 597 SFLFLGPTGVGKTELAKALA 616 (852)
T ss_pred EEEEEcCCCCCHHHHHHHHH
Confidence 58899999999998775443
No 441
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=86.82 E-value=0.75 Score=55.48 Aligned_cols=28 Identities=36% Similarity=0.592 Sum_probs=20.4
Q ss_pred HHHHHHH-cCCeEEEEcCCCchHHhHHHH
Q 002521 257 RLLQAIA-RNQVIVISGETGCGKTTQLPQ 284 (913)
Q Consensus 257 ~il~~i~-~~~~vII~apTGSGKTt~~~~ 284 (913)
.+.+++. .+..++|+|||||||||...-
T Consensus 307 ~l~~~~~~~~Glilv~G~tGSGKTTtl~a 335 (564)
T TIGR02538 307 LFLEAIHKPQGMVLVTGPTGSGKTVSLYT 335 (564)
T ss_pred HHHHHHHhcCCeEEEECCCCCCHHHHHHH
Confidence 4444444 456889999999999987643
No 442
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=86.81 E-value=0.88 Score=53.47 Aligned_cols=19 Identities=32% Similarity=0.627 Sum_probs=15.5
Q ss_pred CCeEEEEcCCCchHHhHHH
Q 002521 265 NQVIVISGETGCGKTTQLP 283 (913)
Q Consensus 265 ~~~vII~apTGSGKTt~~~ 283 (913)
..-|+++||+|||||+.+-
T Consensus 545 PsGvLL~GPPGCGKTLlAK 563 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAK 563 (802)
T ss_pred CCceEEeCCCCccHHHHHH
Confidence 3568999999999997554
No 443
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=86.76 E-value=1.2 Score=43.46 Aligned_cols=83 Identities=16% Similarity=-0.041 Sum_probs=52.1
Q ss_pred CChHHHHHHhccCCCCc-cEEEEecchhhhcCCCCCe--EEEEeCCCCcceeecCCC----------C-CCcCC--cccc
Q 002521 569 MPTSEQKFIFEKAPPNI-RKIVLATNMAEASITINDI--VFVVDCGKAKETTYDALN----------N-TPCLL--PSWI 632 (913)
Q Consensus 569 l~~~er~~v~~~f~~g~-~kVLVATniae~GIdIp~v--~~VId~g~~k~~~yd~~~----------~-~~~l~--~~~i 632 (913)
....+...+++.|+... ..||++|.-+.+|||+|+- +.||-.|+|-....|+.. + ...+. ..+-
T Consensus 31 ~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (141)
T smart00492 31 EDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPFPYPDSPILKARLELLRDKGQIRPFDFVSLPD 110 (141)
T ss_pred CChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhCCCCchhHHHHHH
Confidence 33445567777776543 3799999889999999974 788888988543322210 0 11111 1122
Q ss_pred CHhhHHHHhcccCCCCCcE
Q 002521 633 SQASARQRRGRAGRVQPGQ 651 (913)
Q Consensus 633 Ska~~~QR~GRAGR~~~G~ 651 (913)
.--...|-+||+=|...-.
T Consensus 111 a~~~l~Qa~GR~iR~~~D~ 129 (141)
T smart00492 111 AMRTLAQCVGRLIRGANDY 129 (141)
T ss_pred HHHHHHHHhCccccCcCce
Confidence 3346789999999985433
No 444
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=86.71 E-value=0.4 Score=45.09 Aligned_cols=18 Identities=50% Similarity=0.564 Sum_probs=15.0
Q ss_pred EEEEcCCCchHHhHHHHH
Q 002521 268 IVISGETGCGKTTQLPQY 285 (913)
Q Consensus 268 vII~apTGSGKTt~~~~~ 285 (913)
|+|.|++||||||.+-.+
T Consensus 1 I~i~G~~GsGKtTia~~L 18 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKEL 18 (129)
T ss_dssp EEEEESTTSSHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHH
Confidence 678999999999977543
No 445
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=86.63 E-value=1.6 Score=43.88 Aligned_cols=45 Identities=18% Similarity=0.288 Sum_probs=28.5
Q ss_pred EEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHHHH
Q 002521 268 IVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVSA 320 (913)
Q Consensus 268 vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv~~ 320 (913)
++|.|++|||||+.+.+++.+ .+. +++++.-.+..-..+.+++..
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~------~~~--~~~y~at~~~~d~em~~rI~~ 46 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE------LGG--PVTYIATAEAFDDEMAERIAR 46 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh------cCC--CeEEEEccCcCCHHHHHHHHH
Confidence 688999999999988888754 222 333332333444455666554
No 446
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=86.53 E-value=0.37 Score=52.30 Aligned_cols=20 Identities=35% Similarity=0.479 Sum_probs=16.3
Q ss_pred cCCeEEEEcCCCchHHhHHH
Q 002521 264 RNQVIVISGETGCGKTTQLP 283 (913)
Q Consensus 264 ~~~~vII~apTGSGKTt~~~ 283 (913)
...++++.||||||||+.+-
T Consensus 96 ~KSNILLiGPTGsGKTlLAq 115 (408)
T COG1219 96 SKSNILLIGPTGSGKTLLAQ 115 (408)
T ss_pred eeccEEEECCCCCcHHHHHH
Confidence 45689999999999997553
No 447
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=86.53 E-value=3.6 Score=47.85 Aligned_cols=99 Identities=20% Similarity=0.304 Sum_probs=54.0
Q ss_pred HHHHHHHHHcCCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHHHHHhCCCcccEeeeEE
Q 002521 255 KERLLQAIARNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVSAERGEPLGETVGYKV 334 (913)
Q Consensus 255 q~~il~~i~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv~~~~~~~~g~~vGy~v 334 (913)
.+.+-.....+-.|+|.|+|||||-+++- +|.+.- .+..++...|=|..=...+..+ +.+|..-|...|-..
T Consensus 154 ~~~i~kvA~s~a~VLI~GESGtGKElvAr-~IH~~S-~R~~~PFVavNcaAip~~l~ES------ELFGhekGAFTGA~~ 225 (464)
T COG2204 154 RRLIAKVAPSDASVLITGESGTGKELVAR-AIHQAS-PRAKGPFIAVNCAAIPENLLES------ELFGHEKGAFTGAIT 225 (464)
T ss_pred HHHHHHHhCCCCCEEEECCCCCcHHHHHH-HHHhhC-cccCCCceeeecccCCHHHHHH------HhhcccccCcCCccc
Confidence 34444455567799999999999997663 444432 2234566666663333333332 344544444444211
Q ss_pred eccccCCCCceEEEEecHHHHHHHhcCCCCCCceEEEeccccccCcchH
Q 002521 335 RLEGMKGKNTHLLFCTSGILLRRLLSDHNLNGVTHVFVDEIHERGMNED 383 (913)
Q Consensus 335 ~~e~~~~~~~~Ivv~T~g~Ll~~l~~~~~L~~~s~IIIDEaHer~~~~d 383 (913)
+-.. .+ ...+=+.+.+||+.++.....
T Consensus 226 ~r~G------~f----------------E~A~GGTLfLDEI~~mpl~~Q 252 (464)
T COG2204 226 RRIG------RF----------------EQANGGTLFLDEIGEMPLELQ 252 (464)
T ss_pred ccCc------ce----------------eEcCCceEEeeccccCCHHHH
Confidence 1000 01 123346799999998765544
No 448
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=86.45 E-value=0.47 Score=55.78 Aligned_cols=51 Identities=16% Similarity=0.184 Sum_probs=29.8
Q ss_pred HHHHHhcCCCCCCceEEEeccccccCcchHHHHHHHHHhCccCccceEEEecccc
Q 002521 354 LLRRLLSDHNLNGVTHVFVDEIHERGMNEDFLLIVLKDLLPRRRDLRLILMSATL 408 (913)
Q Consensus 354 Ll~~l~~~~~L~~~s~IIIDEaHer~~~~d~ll~llk~ll~~~~~~kiIlmSATl 408 (913)
+.....-.|.-.++.+.||||||-. .....-++||.+-.-.+ .+++.=||-
T Consensus 107 i~e~v~y~P~~~ryKVyiIDEvHML--S~~afNALLKTLEEPP~--hV~FIlATT 157 (515)
T COG2812 107 IIEKVNYAPSEGRYKVYIIDEVHML--SKQAFNALLKTLEEPPS--HVKFILATT 157 (515)
T ss_pred HHHHhccCCccccceEEEEecHHhh--hHHHHHHHhcccccCcc--CeEEEEecC
Confidence 4444445567889999999999932 23334455555433233 344444553
No 449
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=86.43 E-value=2.1 Score=43.49 Aligned_cols=24 Identities=38% Similarity=0.542 Sum_probs=19.9
Q ss_pred HHHcCCeEEEEcCCCchHHhHHHH
Q 002521 261 AIARNQVIVISGETGCGKTTQLPQ 284 (913)
Q Consensus 261 ~i~~~~~vII~apTGSGKTt~~~~ 284 (913)
.+..+..+.|.||.||||||.+-.
T Consensus 21 ~i~~Ge~~~l~G~nGsGKSTLl~~ 44 (177)
T cd03222 21 VVKEGEVIGIVGPNGTGKTTAVKI 44 (177)
T ss_pred EECCCCEEEEECCCCChHHHHHHH
Confidence 446788999999999999986653
No 450
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=86.33 E-value=1.2 Score=52.88 Aligned_cols=40 Identities=20% Similarity=0.227 Sum_probs=30.0
Q ss_pred HcCCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEc
Q 002521 263 ARNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICT 304 (913)
Q Consensus 263 ~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~ 304 (913)
-.+..++|.|++|||||+.+.+++.+.+.+ .|..|..+.+
T Consensus 19 p~g~~~Li~G~pGsGKT~la~qfl~~g~~~--~ge~~lyvs~ 58 (484)
T TIGR02655 19 PIGRSTLVSGTSGTGKTLFSIQFLYNGIIH--FDEPGVFVTF 58 (484)
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHh--CCCCEEEEEE
Confidence 357899999999999999999999876532 1344555544
No 451
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=86.27 E-value=0.4 Score=49.51 Aligned_cols=21 Identities=43% Similarity=0.801 Sum_probs=18.2
Q ss_pred HHcCCeEEEEcCCCchHHhHH
Q 002521 262 IARNQVIVISGETGCGKTTQL 282 (913)
Q Consensus 262 i~~~~~vII~apTGSGKTt~~ 282 (913)
+..+.+++|+||.||||||.+
T Consensus 25 v~~Gevv~iiGpSGSGKSTlL 45 (240)
T COG1126 25 VEKGEVVVIIGPSGSGKSTLL 45 (240)
T ss_pred EcCCCEEEEECCCCCCHHHHH
Confidence 457899999999999999843
No 452
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=86.17 E-value=0.58 Score=47.25 Aligned_cols=22 Identities=41% Similarity=0.673 Sum_probs=17.7
Q ss_pred CCeEEEEcCCCchHHhHHHHHH
Q 002521 265 NQVIVISGETGCGKTTQLPQYI 286 (913)
Q Consensus 265 ~~~vII~apTGSGKTt~~~~~i 286 (913)
++.++|.||+||||||.+-..+
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~ 22 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALL 22 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4678999999999999665443
No 453
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=86.10 E-value=1.3 Score=46.86 Aligned_cols=39 Identities=26% Similarity=0.421 Sum_probs=28.9
Q ss_pred HcCCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEc
Q 002521 263 ARNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICT 304 (913)
Q Consensus 263 ~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~ 304 (913)
..+..++|.|++|+|||+.+.+++.+.+. .+..+..+-+
T Consensus 23 ~~g~~~~i~G~~GsGKt~l~~~~~~~~~~---~g~~~~y~~~ 61 (234)
T PRK06067 23 PFPSLILIEGDHGTGKSVLSQQFVYGALK---QGKKVYVITT 61 (234)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHHHHHh---CCCEEEEEEc
Confidence 35789999999999999999999887652 3444444443
No 454
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=85.93 E-value=4 Score=45.42 Aligned_cols=32 Identities=6% Similarity=0.258 Sum_probs=22.8
Q ss_pred HHHHHHHHcCC---eEEEEcCCCchHHhHHHHHHH
Q 002521 256 ERLLQAIARNQ---VIVISGETGCGKTTQLPQYIL 287 (913)
Q Consensus 256 ~~il~~i~~~~---~vII~apTGSGKTt~~~~~il 287 (913)
+.+..++.+++ -.+++||.|.||++.+..+..
T Consensus 13 ~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~ 47 (319)
T PRK06090 13 QNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSR 47 (319)
T ss_pred HHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHH
Confidence 34455555554 689999999999987765543
No 455
>PRK13695 putative NTPase; Provisional
Probab=85.91 E-value=3.8 Score=41.23 Aligned_cols=20 Identities=40% Similarity=0.501 Sum_probs=16.6
Q ss_pred eEEEEcCCCchHHhHHHHHH
Q 002521 267 VIVISGETGCGKTTQLPQYI 286 (913)
Q Consensus 267 ~vII~apTGSGKTt~~~~~i 286 (913)
.++++|+.|+||||.+-..+
T Consensus 2 ~i~ltG~~G~GKTTll~~i~ 21 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIA 21 (174)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999999887543
No 456
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=85.62 E-value=0.63 Score=44.84 Aligned_cols=20 Identities=30% Similarity=0.597 Sum_probs=16.6
Q ss_pred eEEEEcCCCchHHhHHHHHH
Q 002521 267 VIVISGETGCGKTTQLPQYI 286 (913)
Q Consensus 267 ~vII~apTGSGKTt~~~~~i 286 (913)
+++++|++||||||.+-.+.
T Consensus 1 lii~~G~pgsGKSt~a~~l~ 20 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLA 20 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHH
Confidence 47899999999999776554
No 457
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=85.61 E-value=1.5 Score=49.23 Aligned_cols=52 Identities=13% Similarity=0.155 Sum_probs=30.1
Q ss_pred HHHHHHhcCCCCCCceEEEeccccccCcchHHHHHHHHHhCccCccceEEEeccc
Q 002521 353 ILLRRLLSDHNLNGVTHVFVDEIHERGMNEDFLLIVLKDLLPRRRDLRLILMSAT 407 (913)
Q Consensus 353 ~Ll~~l~~~~~L~~~s~IIIDEaHer~~~~d~ll~llk~ll~~~~~~kiIlmSAT 407 (913)
.+.+.+...+....+.++|||+||.++. .-.-.+||. +...|.--++++.+.
T Consensus 95 ~l~~~~~~~~~~g~~kV~iI~~ae~m~~--~AaNaLLKt-LEEPp~~t~fiL~t~ 146 (334)
T PRK07993 95 EVTEKLYEHARLGGAKVVWLPDAALLTD--AAANALLKT-LEEPPENTWFFLACR 146 (334)
T ss_pred HHHHHHhhccccCCceEEEEcchHhhCH--HHHHHHHHH-hcCCCCCeEEEEEEC
Confidence 3445555566778999999999996543 333444444 344444334444443
No 458
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=85.52 E-value=2.4 Score=51.94 Aligned_cols=79 Identities=14% Similarity=0.167 Sum_probs=63.7
Q ss_pred CCCcEEEEcCChHHHHHHHHHHHcCCCCCCCCCeEEEEecCCCChHHHHHHhccCCCCccEEEEecchh-hhcCCCCCeE
Q 002521 527 CPGAVLVFMTGWEDISCLRDQLKSHPLLGDPNRVLLLTCHGSMPTSEQKFIFEKAPPNIRKIVLATNMA-EASITINDIV 605 (913)
Q Consensus 527 ~~g~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~g~~kVLVATnia-e~GIdIp~v~ 605 (913)
.+..++|.+|++.-+...++.+... +. ..++.+..+||+++..++..+++...+|...|||+|..+ ...+.+.++.
T Consensus 283 ~g~qvlilaPT~~LA~Q~~~~~~~l--~~-~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~~~~~l~ 359 (630)
T TIGR00643 283 AGYQVALMAPTEILAEQHYNSLRNL--LA-PLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKVEFKRLA 359 (630)
T ss_pred cCCcEEEECCHHHHHHHHHHHHHHH--hc-ccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhccccccccc
Confidence 4568999999999999888888753 11 126789999999999999999999999999999999854 3456777886
Q ss_pred EEE
Q 002521 606 FVV 608 (913)
Q Consensus 606 ~VI 608 (913)
+||
T Consensus 360 lvV 362 (630)
T TIGR00643 360 LVI 362 (630)
T ss_pred eEE
Confidence 665
No 459
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=85.33 E-value=1.5 Score=46.06 Aligned_cols=50 Identities=26% Similarity=0.279 Sum_probs=33.4
Q ss_pred cCCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHHH
Q 002521 264 RNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVS 319 (913)
Q Consensus 264 ~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv~ 319 (913)
.+..++|.|++|+|||+.+.+++.+.+. .+..+.++.+ .....++.+++.
T Consensus 15 ~g~~~li~G~~G~GKt~~~~~~~~~~~~---~g~~~~y~s~---e~~~~~l~~~~~ 64 (224)
T TIGR03880 15 EGHVIVVIGEYGTGKTTFSLQFLYQGLK---NGEKAMYISL---EEREERILGYAK 64 (224)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh---CCCeEEEEEC---CCCHHHHHHHHH
Confidence 4678999999999999999888877552 2444444443 233455555553
No 460
>PRK08760 replicative DNA helicase; Provisional
Probab=85.31 E-value=1.6 Score=51.42 Aligned_cols=60 Identities=17% Similarity=0.221 Sum_probs=37.9
Q ss_pred HHHHHHHHcCCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHHHH
Q 002521 256 ERLLQAIARNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVSA 320 (913)
Q Consensus 256 ~~il~~i~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv~~ 320 (913)
++++.-+..+..++|.|.||.|||+.+..++....... +..+.++. .-....|+..|+..
T Consensus 220 D~~t~G~~~G~LivIaarPg~GKTafal~iA~~~a~~~--g~~V~~fS---lEMs~~ql~~Rl~a 279 (476)
T PRK08760 220 DAMTAGLQPTDLIILAARPAMGKTTFALNIAEYAAIKS--KKGVAVFS---MEMSASQLAMRLIS 279 (476)
T ss_pred HHHhcCCCCCceEEEEeCCCCChhHHHHHHHHHHHHhc--CCceEEEe---ccCCHHHHHHHHHH
Confidence 34455567789999999999999998888876654332 22232332 22334566666543
No 461
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=85.29 E-value=2.7 Score=51.60 Aligned_cols=51 Identities=18% Similarity=0.130 Sum_probs=37.5
Q ss_pred eEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHHHHHhCCC
Q 002521 267 VIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVSAERGEP 325 (913)
Q Consensus 267 ~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv~~~~~~~ 325 (913)
..++.|-||||||+.+...+.+ .+.. ++|+.|...+|.|++..+...++..
T Consensus 31 ~~~l~Gvtgs~kt~~~a~~~~~------~~~p--~Lvi~~n~~~A~ql~~el~~f~p~~ 81 (655)
T TIGR00631 31 HQTLLGVTGSGKTFTMANVIAQ------VNRP--TLVIAHNKTLAAQLYNEFKEFFPEN 81 (655)
T ss_pred cEEEECCCCcHHHHHHHHHHHH------hCCC--EEEEECCHHHHHHHHHHHHHhCCCC
Confidence 5568999999999776654432 1223 4455599999999999998887654
No 462
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=85.13 E-value=1.6 Score=49.55 Aligned_cols=29 Identities=31% Similarity=0.299 Sum_probs=21.9
Q ss_pred HHcCCeEEEEcCCCchHHhHHHHHHHHHHH
Q 002521 262 IARNQVIVISGETGCGKTTQLPQYILESEI 291 (913)
Q Consensus 262 i~~~~~vII~apTGSGKTt~~~~~ile~~~ 291 (913)
|-.||..+|.||.|+||||.+-. |...+.
T Consensus 166 IGkGQR~lIvgppGvGKTTLaK~-Ian~I~ 194 (416)
T PRK09376 166 IGKGQRGLIVAPPKAGKTVLLQN-IANSIT 194 (416)
T ss_pred cccCceEEEeCCCCCChhHHHHH-HHHHHH
Confidence 45789999999999999986544 554443
No 463
>PRK04841 transcriptional regulator MalT; Provisional
Probab=85.06 E-value=3 Score=53.40 Aligned_cols=33 Identities=30% Similarity=0.625 Sum_probs=25.6
Q ss_pred HHHHHHHHH---cCCeEEEEcCCCchHHhHHHHHHH
Q 002521 255 KERLLQAIA---RNQVIVISGETGCGKTTQLPQYIL 287 (913)
Q Consensus 255 q~~il~~i~---~~~~vII~apTGSGKTt~~~~~il 287 (913)
+..++..+. ..+.++|+||.|+||||.+.+++.
T Consensus 19 R~rl~~~l~~~~~~~~~~v~apaG~GKTtl~~~~~~ 54 (903)
T PRK04841 19 RERLLAKLSGANNYRLVLVTSPAGYGKTTLISQWAA 54 (903)
T ss_pred chHHHHHHhcccCCCeEEEECCCCCCHHHHHHHHHH
Confidence 445555554 456899999999999999998873
No 464
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=85.04 E-value=5 Score=37.65 Aligned_cols=36 Identities=31% Similarity=0.320 Sum_probs=24.2
Q ss_pred EEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcch
Q 002521 268 IVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQP 306 (913)
Q Consensus 268 vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qP 306 (913)
++++|..|+|||+........ +. ..+.+..++-+-|
T Consensus 2 i~~~GkgG~GKTt~a~~la~~-l~--~~g~~V~~id~D~ 37 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARY-LA--EKGKPVLAIDADP 37 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHH-HH--HCCCcEEEEECCc
Confidence 688999999999887655433 22 2344555666666
No 465
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=85.03 E-value=3.4 Score=49.29 Aligned_cols=145 Identities=14% Similarity=0.101 Sum_probs=75.6
Q ss_pred HHHHHHHHHH----HcCCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHHHHHhCC-Ccc
Q 002521 253 KEKERLLQAI----ARNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVSAERGE-PLG 327 (913)
Q Consensus 253 ~~q~~il~~i----~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv~~~~~~-~~g 327 (913)
.||-.-+..+ .+|-+-|+.-+.|-|||.|..-++.... + ..+-.+-.+|+.|--.|- .+++.++..+.. ++.
T Consensus 570 EYQlkGLnWLvnlYdqGiNGILADeMGLGKTVQsisvlAhLa-E-~~nIwGPFLVVtpaStL~-NWaqEisrFlP~~k~l 646 (1185)
T KOG0388|consen 570 EYQLKGLNWLVNLYDQGINGILADEMGLGKTVQSISVLAHLA-E-THNIWGPFLVVTPASTLH-NWAQEISRFLPSFKVL 646 (1185)
T ss_pred HHhhccHHHHHHHHHccccceehhhhccchhHHHHHHHHHHH-H-hccCCCceEEeehHHHHh-HHHHHHHHhCccceee
Confidence 4555444444 4567889999999999998876655433 2 223334566767866653 344555544321 111
Q ss_pred cEeee-EEe-----cc-----ccCCCCceEEEEecHHHHH---HHhcCCCCCCceEEEeccccccCcchHHHHHHHHHhC
Q 002521 328 ETVGY-KVR-----LE-----GMKGKNTHLLFCTSGILLR---RLLSDHNLNGVTHVFVDEIHERGMNEDFLLIVLKDLL 393 (913)
Q Consensus 328 ~~vGy-~v~-----~e-----~~~~~~~~Ivv~T~g~Ll~---~l~~~~~L~~~s~IIIDEaHer~~~~d~ll~llk~ll 393 (913)
..-|- ..| +. -....+.+|+|+|.+.+.. +++. -.+.+.|+|||+.- -.-.-...|.++
T Consensus 647 pywGs~~eRkiLrKfw~rKnmY~rna~fhVviTSYQlvVtDeky~qk----vKWQYMILDEAQAI---KSSsS~RWKtLL 719 (1185)
T KOG0388|consen 647 PYWGSPSERKILRKFWNRKNMYRRNAPFHVVITSYQLVVTDEKYLQK----VKWQYMILDEAQAI---KSSSSSRWKTLL 719 (1185)
T ss_pred cCcCChhhhHHHHHhcchhhhhccCCCceEEEEeeeeeechHHHHHh----hhhhheehhHHHHh---hhhhhhHHHHHh
Confidence 11110 000 00 0123457899988866542 2211 24678999999931 011112233333
Q ss_pred ccCccceEEEecccc
Q 002521 394 PRRRDLRLILMSATL 408 (913)
Q Consensus 394 ~~~~~~kiIlmSATl 408 (913)
..... --++++.|+
T Consensus 720 sF~cR-NRLLLTGTP 733 (1185)
T KOG0388|consen 720 SFKCR-NRLLLTGTP 733 (1185)
T ss_pred hhhcc-ceeeecCCc
Confidence 32211 247788886
No 466
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=85.02 E-value=1 Score=53.25 Aligned_cols=33 Identities=36% Similarity=0.498 Sum_probs=21.8
Q ss_pred HHHHHHHHH-HHc-CCeEEEEcCCCchHHhHHHHH
Q 002521 253 KEKERLLQA-IAR-NQVIVISGETGCGKTTQLPQY 285 (913)
Q Consensus 253 ~~q~~il~~-i~~-~~~vII~apTGSGKTt~~~~~ 285 (913)
..+.+.+.. +.. +..++|+|||||||||..-..
T Consensus 228 ~~~~~~l~~~~~~~~GlilitGptGSGKTTtL~a~ 262 (486)
T TIGR02533 228 PELLSRFERLIRRPHGIILVTGPTGSGKTTTLYAA 262 (486)
T ss_pred HHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHH
Confidence 334444443 433 347899999999999877543
No 467
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=85.01 E-value=2.5 Score=50.54 Aligned_cols=72 Identities=14% Similarity=0.170 Sum_probs=56.7
Q ss_pred EEEEcCChHHHHHHHHHHHcCCCCCCCCCeEEEEecCCCChHHHHHHhccCCCCccEEEEecc-----hhhhc-CCCCCe
Q 002521 531 VLVFMTGWEDISCLRDQLKSHPLLGDPNRVLLLTCHGSMPTSEQKFIFEKAPPNIRKIVLATN-----MAEAS-ITINDI 604 (913)
Q Consensus 531 iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~g~~kVLVATn-----iae~G-IdIp~v 604 (913)
.||++||++-+..+++.+....... .++.+..++||++...|...++. | .+|||||+ .++++ +++..+
T Consensus 102 aLil~PTRELA~Qi~~~~~~~~~~~--~~~~~~~i~GG~~~~~q~~~l~~---~-~~ivVaTPGRllD~i~~~~l~l~~v 175 (513)
T COG0513 102 ALILAPTRELAVQIAEELRKLGKNL--GGLRVAVVYGGVSIRKQIEALKR---G-VDIVVATPGRLLDLIKRGKLDLSGV 175 (513)
T ss_pred eEEECCCHHHHHHHHHHHHHHHhhc--CCccEEEEECCCCHHHHHHHHhc---C-CCEEEECccHHHHHHHcCCcchhhc
Confidence 9999999999999988887642111 15668999999998888866654 6 89999998 55555 888899
Q ss_pred EEEE
Q 002521 605 VFVV 608 (913)
Q Consensus 605 ~~VI 608 (913)
.++|
T Consensus 176 ~~lV 179 (513)
T COG0513 176 ETLV 179 (513)
T ss_pred CEEE
Confidence 7776
No 468
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=84.97 E-value=1.7 Score=45.18 Aligned_cols=38 Identities=26% Similarity=0.279 Sum_probs=27.7
Q ss_pred cCCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEc
Q 002521 264 RNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICT 304 (913)
Q Consensus 264 ~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~ 304 (913)
.+..+.|.||+|||||+...+++.+... .+..+..+-+
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~~---~g~~v~yi~~ 48 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNAAR---QGKKVVYIDT 48 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh---CCCeEEEEEC
Confidence 5678999999999999999888776542 2334444444
No 469
>PRK14873 primosome assembly protein PriA; Provisional
Probab=84.93 E-value=1.4 Score=53.90 Aligned_cols=76 Identities=14% Similarity=0.157 Sum_probs=61.2
Q ss_pred CCCcEEEEcCChHHHHHHHHHHHcCCCCCCCCCeEEEEecCCCChHHHHHHhccCCCCccEEEEecchhhhcCCCCCeEE
Q 002521 527 CPGAVLVFMTGWEDISCLRDQLKSHPLLGDPNRVLLLTCHGSMPTSEQKFIFEKAPPNIRKIVLATNMAEASITINDIVF 606 (913)
Q Consensus 527 ~~g~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~g~~kVLVATniae~GIdIp~v~~ 606 (913)
.++.+||.+|....+..+.+.|+... + ...+..+||+++..+|.+.+....+|..+|||.|-.|- =.-+++...
T Consensus 187 ~Gk~vLvLvPEi~lt~q~~~rl~~~f--~---~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRSAv-FaP~~~LgL 260 (665)
T PRK14873 187 AGRGALVVVPDQRDVDRLEAALRALL--G---AGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRSAV-FAPVEDLGL 260 (665)
T ss_pred cCCeEEEEecchhhHHHHHHHHHHHc--C---CCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEcceeE-EeccCCCCE
Confidence 35679999999999999999998762 2 13488899999999999999999999999999997543 244556655
Q ss_pred EE
Q 002521 607 VV 608 (913)
Q Consensus 607 VI 608 (913)
||
T Consensus 261 II 262 (665)
T PRK14873 261 VA 262 (665)
T ss_pred EE
Confidence 44
No 470
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=84.83 E-value=1.1 Score=48.74 Aligned_cols=25 Identities=20% Similarity=0.642 Sum_probs=20.2
Q ss_pred HHcCCeEEEEcCCCchHHhHHHHHH
Q 002521 262 IARNQVIVISGETGCGKTTQLPQYI 286 (913)
Q Consensus 262 i~~~~~vII~apTGSGKTt~~~~~i 286 (913)
+..++.++++||||||||..+-..+
T Consensus 30 ~~~~~pvLl~G~~GtGKT~li~~~l 54 (272)
T PF12775_consen 30 LSNGRPVLLVGPSGTGKTSLIQNFL 54 (272)
T ss_dssp HHCTEEEEEESSTTSSHHHHHHHHH
T ss_pred HHcCCcEEEECCCCCchhHHHHhhh
Confidence 4567899999999999997665544
No 471
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=84.74 E-value=1.3 Score=49.82 Aligned_cols=50 Identities=32% Similarity=0.341 Sum_probs=31.5
Q ss_pred HHHHHH-HHHcCCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHH
Q 002521 255 KERLLQ-AIARNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRIS 310 (913)
Q Consensus 255 q~~il~-~i~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~L 310 (913)
+.+++. ++..+.+++|+|+|||||||.+-.. +..+ .+..+++++.-+.++
T Consensus 167 ~~~~L~~~v~~~~~ili~G~tGsGKTTll~al-~~~i-----~~~~riv~iEd~~El 217 (340)
T TIGR03819 167 VARLLRAIVAARLAFLISGGTGSGKTTLLSAL-LALV-----APDERIVLVEDAAEL 217 (340)
T ss_pred HHHHHHHHHhCCCeEEEECCCCCCHHHHHHHH-HccC-----CCCCcEEEECCccee
Confidence 344444 4566779999999999999876433 2221 123456666666555
No 472
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=84.70 E-value=2.8 Score=51.40 Aligned_cols=36 Identities=39% Similarity=0.594 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHcC---CeEEEEcCCCchHHhHHHHHHH
Q 002521 252 FKEKERLLQAIARN---QVIVISGETGCGKTTQLPQYIL 287 (913)
Q Consensus 252 ~~~q~~il~~i~~~---~~vII~apTGSGKTt~~~~~il 287 (913)
+..+..+++.+..+ +.++|++|.|+||||.+.++..
T Consensus 21 ~v~R~rL~~~L~~~~~~RL~li~APAGfGKttl~aq~~~ 59 (894)
T COG2909 21 YVVRPRLLDRLRRANDYRLILISAPAGFGKTTLLAQWRE 59 (894)
T ss_pred ccccHHHHHHHhcCCCceEEEEeCCCCCcHHHHHHHHHH
Confidence 34566777777665 6899999999999999999975
No 473
>PRK00300 gmk guanylate kinase; Provisional
Probab=84.67 E-value=0.76 Score=47.53 Aligned_cols=23 Identities=39% Similarity=0.702 Sum_probs=19.1
Q ss_pred cCCeEEEEcCCCchHHhHHHHHH
Q 002521 264 RNQVIVISGETGCGKTTQLPQYI 286 (913)
Q Consensus 264 ~~~~vII~apTGSGKTt~~~~~i 286 (913)
.+..++|.||+||||||.+-..+
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~ 26 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALL 26 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
Confidence 57889999999999998665544
No 474
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=84.55 E-value=1.2 Score=49.50 Aligned_cols=33 Identities=21% Similarity=0.414 Sum_probs=27.0
Q ss_pred HHHHHHHHcCCeEEEEcCCCchHHhHHHHHHHH
Q 002521 256 ERLLQAIARNQVIVISGETGCGKTTQLPQYILE 288 (913)
Q Consensus 256 ~~il~~i~~~~~vII~apTGSGKTt~~~~~ile 288 (913)
..++..+..++.+++.|++|||||+.+-+....
T Consensus 55 ~~vl~~l~~~~~ilL~G~pGtGKTtla~~lA~~ 87 (327)
T TIGR01650 55 KAICAGFAYDRRVMVQGYHGTGKSTHIEQIAAR 87 (327)
T ss_pred HHHHHHHhcCCcEEEEeCCCChHHHHHHHHHHH
Confidence 347777788899999999999999988766543
No 475
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=84.51 E-value=1.1 Score=46.98 Aligned_cols=28 Identities=32% Similarity=0.427 Sum_probs=24.0
Q ss_pred HcCCeEEEEcCCCchHHhHHHHHHHHHH
Q 002521 263 ARNQVIVISGETGCGKTTQLPQYILESE 290 (913)
Q Consensus 263 ~~~~~vII~apTGSGKTt~~~~~ile~~ 290 (913)
..+..++|.|++|||||+.+.+++.+..
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~~a~~~~ 44 (218)
T cd01394 17 ERGTVTQVYGPPGTGKTNIAIQLAVETA 44 (218)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3578899999999999999999887654
No 476
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.38 E-value=5.5 Score=44.65 Aligned_cols=134 Identities=17% Similarity=0.252 Sum_probs=80.5
Q ss_pred CCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHHHHHhCCCcccEeeeEEeccccCCCCc
Q 002521 265 NQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVSAERGEPLGETVGYKVRLEGMKGKNT 344 (913)
Q Consensus 265 ~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv~~~~~~~~g~~vGy~v~~e~~~~~~~ 344 (913)
..+++++|=-|+||||....+.... .++|..+.++|.--.|+-|....+..+...+.++.. .|. ...
T Consensus 101 psVimfVGLqG~GKTTtc~KlA~y~---kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~yg--syt------e~d-- 167 (483)
T KOG0780|consen 101 PSVIMFVGLQGSGKTTTCTKLAYYY---KKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYG--SYT------EAD-- 167 (483)
T ss_pred CcEEEEEeccCCCcceeHHHHHHHH---HhcCCceeEEeecccccchHHHHHHHhHhhCCeeEe--ccc------ccc--
Confidence 3578889999999999887766543 356777888887777888876666555544433322 010 000
Q ss_pred eEEEEecHHHHHHHhcCCCCCCceEEEeccccccCcchHHHHHHHHHhCccCccceEEEecccc--CHHHHHhhh
Q 002521 345 HLLFCTSGILLRRLLSDHNLNGVTHVFVDEIHERGMNEDFLLIVLKDLLPRRRDLRLILMSATL--NAELFSNYF 417 (913)
Q Consensus 345 ~Ivv~T~g~Ll~~l~~~~~L~~~s~IIIDEaHer~~~~d~ll~llk~ll~~~~~~kiIlmSATl--~~~~~~~yf 417 (913)
.+.|+.-| .....-.++++||+|=.-++..+..+...+....-...|+.-++.|-|++ .++..+.-|
T Consensus 168 pv~ia~eg------v~~fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~aF 236 (483)
T KOG0780|consen 168 PVKIASEG------VDRFKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQARAF 236 (483)
T ss_pred hHHHHHHH------HHHHHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHHHH
Confidence 11122111 11123468999999988855455555444433333456887888899998 333334444
No 477
>PLN02165 adenylate isopentenyltransferase
Probab=84.19 E-value=0.81 Score=50.91 Aligned_cols=21 Identities=38% Similarity=0.654 Sum_probs=18.1
Q ss_pred cCCeEEEEcCCCchHHhHHHH
Q 002521 264 RNQVIVISGETGCGKTTQLPQ 284 (913)
Q Consensus 264 ~~~~vII~apTGSGKTt~~~~ 284 (913)
.+.+++|.||||||||+.+..
T Consensus 42 ~g~iivIiGPTGSGKStLA~~ 62 (334)
T PLN02165 42 KDKVVVIMGATGSGKSRLSVD 62 (334)
T ss_pred CCCEEEEECCCCCcHHHHHHH
Confidence 566899999999999987765
No 478
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=84.14 E-value=0.74 Score=48.93 Aligned_cols=33 Identities=15% Similarity=0.188 Sum_probs=27.2
Q ss_pred HHHHcCCeEEEEcCCCchHHhHHHHHHHHHHHH
Q 002521 260 QAIARNQVIVISGETGCGKTTQLPQYILESEIE 292 (913)
Q Consensus 260 ~~i~~~~~vII~apTGSGKTt~~~~~ile~~~~ 292 (913)
.-+..++.++|+|+||+|||+.+.+++...+..
T Consensus 8 ~Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~ 40 (242)
T cd00984 8 GGLQPGDLIIIAARPSMGKTAFALNIAENIAKK 40 (242)
T ss_pred cCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHh
Confidence 345678899999999999999999888876643
No 479
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=84.04 E-value=0.79 Score=44.39 Aligned_cols=19 Identities=47% Similarity=0.816 Sum_probs=15.2
Q ss_pred EEEEcCCCchHHhHHHHHH
Q 002521 268 IVISGETGCGKTTQLPQYI 286 (913)
Q Consensus 268 vII~apTGSGKTt~~~~~i 286 (913)
++|+||||||||+.+-...
T Consensus 2 i~i~GpsGsGKstl~~~L~ 20 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLL 20 (137)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6789999999998665443
No 480
>CHL00176 ftsH cell division protein; Validated
Probab=83.89 E-value=4.6 Score=49.33 Aligned_cols=22 Identities=23% Similarity=0.338 Sum_probs=17.4
Q ss_pred CCeEEEEcCCCchHHhHHHHHH
Q 002521 265 NQVIVISGETGCGKTTQLPQYI 286 (913)
Q Consensus 265 ~~~vII~apTGSGKTt~~~~~i 286 (913)
.+.+++.||+|+|||+.+-...
T Consensus 216 p~gVLL~GPpGTGKT~LAralA 237 (638)
T CHL00176 216 PKGVLLVGPPGTGKTLLAKAIA 237 (638)
T ss_pred CceEEEECCCCCCHHHHHHHHH
Confidence 3569999999999998765443
No 481
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=83.83 E-value=5.7 Score=43.57 Aligned_cols=117 Identities=17% Similarity=0.188 Sum_probs=56.2
Q ss_pred HHHHHH-HcCCeEEEEcCCCchHHhHHHHHHHHHHHH----h-CCCCceEEEE--cchhHHHHHHHHHHHHHHhCCCccc
Q 002521 257 RLLQAI-ARNQVIVISGETGCGKTTQLPQYILESEIE----S-GRGAFCNIIC--TQPRRISAMAVSERVSAERGEPLGE 328 (913)
Q Consensus 257 ~il~~i-~~~~~vII~apTGSGKTt~~~~~ile~~~~----~-~~~~~~~Ilv--~qPrr~La~qva~rv~~~~~~~~g~ 328 (913)
++++-. .++-.++|.|+.|.||||..+...+....- . .....+.|++ +.-.|+-+..-.+.+...+|...+.
T Consensus 80 ~lId~~fr~g~~~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvslEl~re~~L~Rl~~v~a~mgLsPad 159 (402)
T COG3598 80 QLIDEFFRKGYVSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLELYREDILERLEPVRARMGLSPAD 159 (402)
T ss_pred hhhhHHhhcCeeEEEecCCcccHhHHHHHHHHHHHhhHHHhcccccCCCeEEEEEeccChHHHHHHHHHHHHHcCCChHh
Confidence 344444 455567777999999999887665543211 0 1111223333 4445555554455555555554333
Q ss_pred EeeeEEeccccCCCCceEEEEecHHHHHHHhcCCCCCCceEEEecccc
Q 002521 329 TVGYKVRLEGMKGKNTHLLFCTSGILLRRLLSDHNLNGVTHVFVDEIH 376 (913)
Q Consensus 329 ~vGy~v~~e~~~~~~~~Ivv~T~g~Ll~~l~~~~~L~~~s~IIIDEaH 376 (913)
.-.... .+.......--+..| .|.+.+.....-...++||||=.=
T Consensus 160 vrn~dl--td~~Gaa~~~d~l~p-kl~rRfek~~~Q~rp~~vViDp~v 204 (402)
T COG3598 160 VRNMDL--TDVSGAADESDVLSP-KLYRRFEKILEQKRPDFVVIDPFV 204 (402)
T ss_pred hhheec--cccccCCCccccccH-HHHHHHHHHHHHhCCCeEEEcchh
Confidence 211111 011111111112234 555555433333456788888654
No 482
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=83.78 E-value=0.86 Score=43.87 Aligned_cols=20 Identities=30% Similarity=0.488 Sum_probs=16.3
Q ss_pred eEEEEcCCCchHHhHHHHHH
Q 002521 267 VIVISGETGCGKTTQLPQYI 286 (913)
Q Consensus 267 ~vII~apTGSGKTt~~~~~i 286 (913)
.|++.||+|+|||+.+-.+.
T Consensus 1 ~vlL~G~~G~GKt~l~~~la 20 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELA 20 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHH
Confidence 47899999999998776544
No 483
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=83.65 E-value=2.5 Score=52.86 Aligned_cols=22 Identities=23% Similarity=0.305 Sum_probs=17.3
Q ss_pred CCeEEEEcCCCchHHhHHHHHH
Q 002521 265 NQVIVISGETGCGKTTQLPQYI 286 (913)
Q Consensus 265 ~~~vII~apTGSGKTt~~~~~i 286 (913)
...+++.||+|||||+.+-...
T Consensus 487 ~~giLL~GppGtGKT~lakalA 508 (733)
T TIGR01243 487 PKGVLLFGPPGTGKTLLAKAVA 508 (733)
T ss_pred CceEEEECCCCCCHHHHHHHHH
Confidence 3468999999999998765544
No 484
>cd06007 R3H_DEXH_helicase R3H domain of a group of proteins which also contain a DEXH-box helicase domain, and may function as ATP-dependent DNA or RNA helicases. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=83.65 E-value=2.1 Score=34.97 Aligned_cols=43 Identities=23% Similarity=0.260 Sum_probs=33.9
Q ss_pred HHhhhhccCCCceEEeccccCcccHHHHHHHHHHcccceeeccc
Q 002521 88 KLGMLLRSETDQEVTSWDKRDRRDYEQISFLAKRMGLYSQVYGK 131 (913)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (913)
.|+.++.++ +++++---..+-.+--.||.+|..+||.+++||+
T Consensus 7 ~i~~F~~~~-~~~l~Fpp~ls~~eR~~vH~~a~~~gL~s~S~G~ 49 (59)
T cd06007 7 ALEDFRASD-NEEYEFPSSLTNHERAVIHRLCRKLGLKSKSKGK 49 (59)
T ss_pred HHHHHHcCc-ccEEEcCCCCCHHHHHHHHHHHHHcCCCceeecC
Confidence 466667666 6776655557777777899999999999999987
No 485
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=83.64 E-value=3.2 Score=49.11 Aligned_cols=19 Identities=32% Similarity=0.609 Sum_probs=15.6
Q ss_pred CCeEEEEcCCCchHHhHHH
Q 002521 265 NQVIVISGETGCGKTTQLP 283 (913)
Q Consensus 265 ~~~vII~apTGSGKTt~~~ 283 (913)
.+.+++.||+|||||+.+-
T Consensus 216 p~GILLyGPPGTGKT~LAK 234 (512)
T TIGR03689 216 PKGVLLYGPPGCGKTLIAK 234 (512)
T ss_pred CcceEEECCCCCcHHHHHH
Confidence 3568999999999998554
No 486
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=83.56 E-value=4 Score=49.71 Aligned_cols=22 Identities=32% Similarity=0.810 Sum_probs=18.2
Q ss_pred CCeEEEEcCCCchHHhHHHHHH
Q 002521 265 NQVIVISGETGCGKTTQLPQYI 286 (913)
Q Consensus 265 ~~~vII~apTGSGKTt~~~~~i 286 (913)
++.+++.||+||||||.+-...
T Consensus 110 ~~illL~GP~GsGKTTl~~~la 131 (637)
T TIGR00602 110 KRILLITGPSGCGKSTTIKILS 131 (637)
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999998776554
No 487
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=83.53 E-value=0.93 Score=49.90 Aligned_cols=22 Identities=32% Similarity=0.587 Sum_probs=17.8
Q ss_pred cCCeEEEEcCCCchHHhHHHHH
Q 002521 264 RNQVIVISGETGCGKTTQLPQY 285 (913)
Q Consensus 264 ~~~~vII~apTGSGKTt~~~~~ 285 (913)
.++.++|+||||||||-.+...
T Consensus 3 ~~~ii~I~GpTasGKS~LAl~L 24 (300)
T PRK14729 3 ENKIVFIFGPTAVGKSNILFHF 24 (300)
T ss_pred CCcEEEEECCCccCHHHHHHHH
Confidence 4568999999999999766544
No 488
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=83.49 E-value=5.4 Score=47.92 Aligned_cols=29 Identities=21% Similarity=0.347 Sum_probs=21.6
Q ss_pred HHHHHHHHHcCCeEEEEcCCCchHHhHHH
Q 002521 255 KERLLQAIARNQVIVISGETGCGKTTQLP 283 (913)
Q Consensus 255 q~~il~~i~~~~~vII~apTGSGKTt~~~ 283 (913)
.+.+-.+...+..|+|.|+||||||+.+-
T Consensus 209 ~~~~~~~a~~~~pvli~Ge~GtGK~~lA~ 237 (534)
T TIGR01817 209 VDQARVVARSNSTVLLRGESGTGKELIAK 237 (534)
T ss_pred HHHHHHHhCcCCCEEEECCCCccHHHHHH
Confidence 34444444567789999999999998664
No 489
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=83.23 E-value=6.9 Score=48.33 Aligned_cols=120 Identities=23% Similarity=0.283 Sum_probs=60.6
Q ss_pred CeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcchhHHHHHHHHHHHHHHhCCCcccEeeeEEeccccCCCCce
Q 002521 266 QVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVSAERGEPLGETVGYKVRLEGMKGKNTH 345 (913)
Q Consensus 266 ~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qPrr~La~qva~rv~~~~~~~~g~~vGy~v~~e~~~~~~~~ 345 (913)
.+.+..||||.|||..+-+.. +.+.. . ....|-+ ---+ .+=...+++..|.+.| .|||...
T Consensus 522 gsFlF~GPTGVGKTELAkaLA-~~Lfg-~--e~aliR~--DMSE--y~EkHsVSrLIGaPPG-YVGyeeG---------- 582 (786)
T COG0542 522 GSFLFLGPTGVGKTELAKALA-EALFG-D--EQALIRI--DMSE--YMEKHSVSRLIGAPPG-YVGYEEG---------- 582 (786)
T ss_pred eEEEeeCCCcccHHHHHHHHH-HHhcC-C--Cccceee--chHH--HHHHHHHHHHhCCCCC-Cceeccc----------
Confidence 378889999999997665433 33311 1 1222222 1111 1112334555565543 5776532
Q ss_pred EEEEecHHHHHHHhcCCCCCCceEEEeccccccCcchHHHHHHHHHhCc----cCc----cc--eEEEeccccCHHHHHh
Q 002521 346 LLFCTSGILLRRLLSDHNLNGVTHVFVDEIHERGMNEDFLLIVLKDLLP----RRR----DL--RLILMSATLNAELFSN 415 (913)
Q Consensus 346 Ivv~T~g~Ll~~l~~~~~L~~~s~IIIDEaHer~~~~d~ll~llk~ll~----~~~----~~--kiIlmSATl~~~~~~~ 415 (913)
|.|......+ -|++|.+||+.. .+.|++..+|.-+=. ... ++ -+|+||.-+-.+.+.+
T Consensus 583 ------G~LTEaVRr~----PySViLlDEIEK--AHpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN~Gs~~i~~ 650 (786)
T COG0542 583 ------GQLTEAVRRK----PYSVILLDEIEK--AHPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSNAGSEEILR 650 (786)
T ss_pred ------cchhHhhhcC----CCeEEEechhhh--cCHHHHHHHHHHhcCCeeecCCCCEEecceeEEEEecccchHHHHh
Confidence 2333444433 489999999983 344554444332211 111 11 3677777665554443
Q ss_pred h
Q 002521 416 Y 416 (913)
Q Consensus 416 y 416 (913)
.
T Consensus 651 ~ 651 (786)
T COG0542 651 D 651 (786)
T ss_pred h
Confidence 3
No 490
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=83.15 E-value=4.6 Score=50.84 Aligned_cols=22 Identities=23% Similarity=0.404 Sum_probs=17.6
Q ss_pred CCeEEEEcCCCchHHhHHHHHH
Q 002521 265 NQVIVISGETGCGKTTQLPQYI 286 (913)
Q Consensus 265 ~~~vII~apTGSGKTt~~~~~i 286 (913)
+..+++.||+|+|||+.+-...
T Consensus 347 ~~~lll~GppG~GKT~lAk~iA 368 (775)
T TIGR00763 347 GPILCLVGPPGVGKTSLGKSIA 368 (775)
T ss_pred CceEEEECCCCCCHHHHHHHHH
Confidence 4579999999999998765443
No 491
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=83.12 E-value=1.7 Score=48.45 Aligned_cols=20 Identities=30% Similarity=0.396 Sum_probs=16.5
Q ss_pred cCCeEEEEcCCCchHHhHHH
Q 002521 264 RNQVIVISGETGCGKTTQLP 283 (913)
Q Consensus 264 ~~~~vII~apTGSGKTt~~~ 283 (913)
....+++.||.|||||..+-
T Consensus 126 p~kGiLL~GPpG~GKTmlAK 145 (386)
T KOG0737|consen 126 PPKGILLYGPPGTGKTMLAK 145 (386)
T ss_pred CCccceecCCCCchHHHHHH
Confidence 55789999999999996543
No 492
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=83.02 E-value=5.5 Score=47.59 Aligned_cols=32 Identities=28% Similarity=0.318 Sum_probs=23.6
Q ss_pred HHHHHHHHHHcCCeEEEEcCCCchHHhHHHHH
Q 002521 254 EKERLLQAIARNQVIVISGETGCGKTTQLPQY 285 (913)
Q Consensus 254 ~q~~il~~i~~~~~vII~apTGSGKTt~~~~~ 285 (913)
..+.+-.....+..|+|.|++|+||++.+-..
T Consensus 199 ~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~i 230 (509)
T PRK05022 199 LKKEIEVVAASDLNVLILGETGVGKELVARAI 230 (509)
T ss_pred HHHHHHHHhCCCCcEEEECCCCccHHHHHHHH
Confidence 34445555556789999999999999877543
No 493
>PRK14530 adenylate kinase; Provisional
Probab=83.02 E-value=0.97 Score=47.30 Aligned_cols=22 Identities=32% Similarity=0.469 Sum_probs=18.8
Q ss_pred CCeEEEEcCCCchHHhHHHHHH
Q 002521 265 NQVIVISGETGCGKTTQLPQYI 286 (913)
Q Consensus 265 ~~~vII~apTGSGKTt~~~~~i 286 (913)
+..++|.|++||||||++-...
T Consensus 3 ~~~I~i~G~pGsGKsT~~~~La 24 (215)
T PRK14530 3 QPRILLLGAPGAGKGTQSSNLA 24 (215)
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 5678999999999999887654
No 494
>PF13871 Helicase_C_4: Helicase_C-like
Probab=82.96 E-value=5.2 Score=43.48 Aligned_cols=122 Identities=17% Similarity=0.135 Sum_probs=78.7
Q ss_pred HhccCCCCccEEEEecchhhhcCCCCCeEEEEeCCCCcceeecCCCCCCcCCccccCHhhHHHHhcccCCCCC--cEEEE
Q 002521 577 IFEKAPPNIRKIVLATNMAEASITINDIVFVVDCGKAKETTYDALNNTPCLLPSWISQASARQRRGRAGRVQP--GQCYH 654 (913)
Q Consensus 577 v~~~f~~g~~kVLVATniae~GIdIp~v~~VId~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~~~--G~c~~ 654 (913)
..+.|.+|+..|+|-|..+.+||.+-+-.-+-| . ..........+-|-..++|..||+-|... .-.|+
T Consensus 53 e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~n-q---------r~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~ 122 (278)
T PF13871_consen 53 EKQAFMDGEKDVAIISDAGSTGISLHADRRVKN-Q---------RRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYR 122 (278)
T ss_pred HHHHHhCCCceEEEEecccccccchhccccCCC-C---------CceEEEEeeCCCCHHHHHHHhccccccccccCCEEE
Confidence 446899999999999999999999976544443 1 11222234455688899999999999822 22233
Q ss_pred e-cChhhHHhhhhCCCCcccccChhhHHHHHhhcCCCCHHHHHHhccCCCchHHHHHHHHHHHHcCCCCCCCCccccccc
Q 002521 655 L-YPRCVYEAFAEYQLPELLRTPLNSLCLQIKSLQVGSIGEFLSAALQPPEPLAVQNAVDFLKRIGALDEKENLTNLGKF 733 (913)
Q Consensus 655 L-~t~~~~~~l~~~~~pEi~r~~L~~~~L~lk~l~~~~~~~fl~~~l~pP~~~~i~~al~~L~~~gald~~~~lT~lG~~ 733 (913)
+ ++.-..+ ..| ....-..|..+||+....+=|.-+..
T Consensus 123 ~l~t~~~gE------------------------------~Rf------------as~va~rL~sLgAlt~gdr~~~~~~~ 160 (278)
T PF13871_consen 123 FLVTDLPGE------------------------------RRF------------ASTVARRLESLGALTRGDRRAGGALD 160 (278)
T ss_pred EeecCCHHH------------------------------HHH------------HHHHHHHHhhccccccCccccccccc
Confidence 2 2221111 112 22234578889999876654544466
Q ss_pred ccccCCChHHHHHHHHh
Q 002521 734 LSMLPVDPKLGKMLVMG 750 (913)
Q Consensus 734 ls~lpl~p~~~k~ll~~ 750 (913)
++.+-++-.+|+..+.-
T Consensus 161 ~~~~n~~~~yg~~aL~~ 177 (278)
T PF13871_consen 161 LSEFNLDNKYGRKALRR 177 (278)
T ss_pred ccccccchHHHHHHHHH
Confidence 78888999999876543
No 495
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=82.94 E-value=1.6 Score=48.27 Aligned_cols=40 Identities=30% Similarity=0.440 Sum_probs=26.6
Q ss_pred cCCeEEEEcCCCchHHhHHHHHHHHHHHHhCCCCceEEEEcch
Q 002521 264 RNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQP 306 (913)
Q Consensus 264 ~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~Ilv~qP 306 (913)
...++.|+|++||||||.+-..+... . ..+..+.++-+-|
T Consensus 33 ~~~~i~i~G~~G~GKttl~~~l~~~~-~--~~~~~v~~i~~D~ 72 (300)
T TIGR00750 33 NAHRVGITGTPGAGKSTLLEALGMEL-R--RRGLKVAVIAVDP 72 (300)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH-H--HCCCeEEEEecCC
Confidence 46789999999999998776655432 1 2344555555444
No 496
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=82.69 E-value=3.6 Score=52.42 Aligned_cols=79 Identities=13% Similarity=0.119 Sum_probs=63.7
Q ss_pred CCCcEEEEcCChHHHHHHHHHHHcCCCCCCCCCeEEEEecCCCChHHHHHHhccCCCCccEEEEecc-hhhhcCCCCCeE
Q 002521 527 CPGAVLVFMTGWEDISCLRDQLKSHPLLGDPNRVLLLTCHGSMPTSEQKFIFEKAPPNIRKIVLATN-MAEASITINDIV 605 (913)
Q Consensus 527 ~~g~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~g~~kVLVATn-iae~GIdIp~v~ 605 (913)
.+..++|.+||..-+...++.+... +.. .++.+..++|..+..++..+++..+.|..+|||+|. ++...+.+.++.
T Consensus 499 ~g~qvlvLvPT~~LA~Q~~~~f~~~--~~~-~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~~~v~f~~L~ 575 (926)
T TIGR00580 499 DGKQVAVLVPTTLLAQQHFETFKER--FAN-FPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQKDVKFKDLG 575 (926)
T ss_pred hCCeEEEEeCcHHHHHHHHHHHHHH--hcc-CCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhhCCCCcccCC
Confidence 3568999999999999998888764 111 256788899999999999999999999999999998 444567788886
Q ss_pred EEE
Q 002521 606 FVV 608 (913)
Q Consensus 606 ~VI 608 (913)
+||
T Consensus 576 llV 578 (926)
T TIGR00580 576 LLI 578 (926)
T ss_pred EEE
Confidence 665
No 497
>PRK08233 hypothetical protein; Provisional
Probab=82.68 E-value=0.99 Score=45.48 Aligned_cols=22 Identities=32% Similarity=0.474 Sum_probs=18.0
Q ss_pred CCeEEEEcCCCchHHhHHHHHH
Q 002521 265 NQVIVISGETGCGKTTQLPQYI 286 (913)
Q Consensus 265 ~~~vII~apTGSGKTt~~~~~i 286 (913)
..++.|.|++||||||++-...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~ 24 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLT 24 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 3578889999999999886554
No 498
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=82.50 E-value=0.85 Score=47.91 Aligned_cols=22 Identities=36% Similarity=0.628 Sum_probs=18.7
Q ss_pred HHcCCeEEEEcCCCchHHhHHH
Q 002521 262 IARNQVIVISGETGCGKTTQLP 283 (913)
Q Consensus 262 i~~~~~vII~apTGSGKTt~~~ 283 (913)
+..+..+.|.||+||||||..-
T Consensus 28 i~~Ge~vaI~GpSGSGKSTLLn 49 (226)
T COG1136 28 IEAGEFVAIVGPSGSGKSTLLN 49 (226)
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 3578999999999999998554
No 499
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=82.29 E-value=5.2 Score=42.56 Aligned_cols=25 Identities=24% Similarity=0.274 Sum_probs=20.9
Q ss_pred CCeEEEEcCCCchHHhHHHHHHHHH
Q 002521 265 NQVIVISGETGCGKTTQLPQYILES 289 (913)
Q Consensus 265 ~~~vII~apTGSGKTt~~~~~ile~ 289 (913)
+.+.++.||.|+|||+.+.++++..
T Consensus 1 g~~~ll~g~~G~GKS~lal~la~~v 25 (239)
T cd01125 1 GYVSALVAPGGTGKSSLLLVLALAM 25 (239)
T ss_pred CceeEEEcCCCCCHHHHHHHHHHHH
Confidence 3567899999999999998887753
No 500
>CHL00095 clpC Clp protease ATP binding subunit
Probab=82.28 E-value=5.9 Score=50.24 Aligned_cols=20 Identities=35% Similarity=0.466 Sum_probs=16.1
Q ss_pred eEEEEcCCCchHHhHHHHHH
Q 002521 267 VIVISGETGCGKTTQLPQYI 286 (913)
Q Consensus 267 ~vII~apTGSGKTt~~~~~i 286 (913)
.++++||||+|||+.+-...
T Consensus 541 ~~lf~Gp~GvGKt~lA~~LA 560 (821)
T CHL00095 541 SFLFSGPTGVGKTELTKALA 560 (821)
T ss_pred EEEEECCCCCcHHHHHHHHH
Confidence 47899999999998775443
Done!