Query 002521
Match_columns 913
No_of_seqs 445 out of 3342
Neff 7.8
Searched_HMMs 29240
Date Tue Mar 26 16:51:59 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002521.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1239-1242//hhsearch_pdb/002521hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xau_A PRE-mRNA-splicing facto 1.0 1 1 810.3 55.2 601 234-909 78-690 (773)
2 2va8_A SSO2462, SKI2-type heli 1.0 1 1 469.4 40.9 533 237-842 17-623 (715)
3 2p6r_A Afuhel308 helicase; pro 1.0 1 1 455.4 40.7 515 250-849 25-613 (702)
4 2zj8_A DNA helicase, putative 1.0 1 1 434.9 36.3 464 236-783 9-540 (720)
5 4f92_B U5 small nuclear ribonu 1.0 1 1 355.2 35.1 465 238-777 915-1463(1724)
6 3l9o_A ATP-dependent RNA helic 1.0 1 1 354.0 25.1 379 244-660 178-598 (1108)
7 4f92_B U5 small nuclear ribonu 1.0 1 1 349.5 32.7 457 252-780 81-635 (1724)
8 4a4z_A Antiviral helicase SKI2 1.0 1 1 340.3 23.6 384 246-657 35-490 (997)
9 3eiq_A Eukaryotic initiation f 1.0 1 1 333.6 21.1 342 236-676 48-407 (414)
10 3o8b_A HCV NS3 protease/helica 1.0 1 1 332.4 16.8 303 242-661 209-516 (666)
No 1
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=1.00 E-value=1 Score=810.26 Aligned_cols=601 Identities=35% Similarity=0.585 Sum_probs=526.9
Q ss_pred HCCCHHHHHHHHHCCCCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHH
Q ss_conf 11910022786311899689999999999919919999279703896999999999998189982299975104989999
Q 002521 234 QESPEGNKMLDFRKSLPSFKEKERLLQAIARNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMA 313 (913)
Q Consensus 234 ~~~~~~~~l~~~r~~lP~~~~q~~il~~i~~~~~viI~a~TGSGKTt~~~~~ile~~~~~~~g~~~~Ilvt~P~r~lA~q 313 (913)
..++.+.+++..+..+|++.+++++..++..+++++++||||||||+++|+++++.....+ ....|+|++|+|++|.|
T Consensus 78 ~l~~~~~~~l~~r~~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTtllp~ll~~~~~~~~--~g~~ilvl~P~r~La~q 155 (773)
T 2xau_A 78 EFTPKYVDILKIRRELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHL--ENTQVACTQPRRVAAMS 155 (773)
T ss_dssp BCCHHHHHHHHHHTTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHCGGG--GTCEEEEEESCHHHHHH
T ss_pred CCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHCCCCC--CCCEEEECCCHHHHHHH
T ss_conf 9898999999986618959999999999967983999889988999999999997400158--99658861856999999
Q ss_pred HHHHHHHHHCCCCCCEEEEEEECCCCCCCCCEEEEEECHHHHHHHHCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHC
Q ss_conf 99999988299866276137721455799830999800788999805999998319995364446741479999999867
Q 002521 314 VSERVSAERGEPLGETVGYKVRLEGMKGKNTHLLFCTSGILLRRLLSDHNLNGVTHVFVDEIHERGMNEDFLLIVLKDLL 393 (913)
Q Consensus 314 ia~ri~~e~~~~~g~~vGy~vr~e~~~~~~~~Iiv~T~g~Ll~~l~~~~~L~~~~~IIIDEaHer~~~~d~ll~~lk~ll 393 (913)
++++++.+++..++..+||.++++.....+++|+|+|+|++++.+..+..+.++++|||||+|+|+++.+.++.+++.+.
T Consensus 156 ~~~~l~~~~~~~v~~~vG~~i~~~~~~~~~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~ 235 (773)
T 2xau_A 156 VAQRVAEEMDVKLGEEVGYSIRFENKTSNKTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVV 235 (773)
T ss_dssp HHHHHHHHTTCCBTTTEEEEETTEEECCTTCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHEECCEECCCCCCCCCCCEEEECHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHH
T ss_conf 99999998488453256622244545588987799899999999742844357788995470103645589999999998
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHHCCCCEECCCCCCCCCEEEEHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCHHH
Q ss_conf 56866518980444688889736199995504894025135650447864104445666454114566777764211123
Q 002521 394 PRRRDLRLILMSATLNAELFSNYFGGAPTIHIPGFTYPVQAHFLEDVLEMTGYKLTSLNQVDDYGQEKLWKTQRQLLPRK 473 (913)
Q Consensus 394 ~~~~~~kiIlmSATl~~~~~~~yf~~~~vi~i~~~~~pv~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (913)
..+++.++|+||||++.+.+..||++++++.++++.+|++.+|..... .++
T Consensus 236 ~~~~~~~iIl~SAT~~~~~l~~~~~~~~vi~v~gr~~pv~~~~~~~~~-------------~~~---------------- 286 (773)
T 2xau_A 236 KRRPDLKIIIMSATLDAEKFQRYFNDAPLLAVPGRTYPVELYYTPEFQ-------------RDY---------------- 286 (773)
T ss_dssp HHCTTCEEEEEESCSCCHHHHHHTTSCCEEECCCCCCCEEEECCSSCC-------------SCH----------------
T ss_pred HHCCCCEEEEEECCCCHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCC-------------HHH----------------
T ss_conf 748786299994335689999984689854536865553889806882-------------459----------------
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHCCC-
Q ss_conf 4545899999997202445553244421001222323323499999988630699969998299679999999997499-
Q 002521 474 RKNQITALVEDALHKSNFENYSSRARDSLASWTADCIGFNLIEAVLCHICRKECPGAVLVFMTGWEDISCLRDQLKSHP- 552 (913)
Q Consensus 474 ~~~~i~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~- 552 (913)
.+. ....+..++....+|++||||+++++++.+++.|....
T Consensus 287 --------~~~------------------------------~l~~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~ 328 (773)
T 2xau_A 287 --------LDS------------------------------AIRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGD 328 (773)
T ss_dssp --------HHH------------------------------HHHHHHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHH
T ss_pred --------HHH------------------------------HHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHH
T ss_conf --------999------------------------------999999999726899989989989999999999999887
Q ss_pred -C--CCCCCCEEEEEECCCCCHHHHHHHHCCCC-----CCCCEEEEECCHHHHCCCCCCEEEEEECCCCCCEEECCCCCC
Q ss_conf -9--89999718998038999588998840089-----996279996102220477798679993899862110489997
Q 002521 553 -L--LGDPNRVLLLTCHGSMPTSEQKFIFEKAP-----PNIRKIVLATNMAEASITINDIVFVVDCGKAKETTYDALNNT 624 (913)
Q Consensus 553 -~--~~~~~~~~v~~lHs~l~~~er~~v~~~f~-----~g~~kVIvATniae~GIdIP~V~~VId~g~~k~~~yd~~~~~ 624 (913)
. .....++.+.++||+|+.++|..+++.|+ +|.++||||||++|+|||||+|++|||+|++|.+.||+..++
T Consensus 329 ~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~ 408 (773)
T 2xau_A 329 QLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRV 408 (773)
T ss_dssp HHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTE
T ss_pred HHCCCCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCEEEEEECCHHHHCCCCCCEEEEEECCCCCCEEECCCCCC
T ss_conf 63134567975999807899999999998526434578883499996767984767687379994797221222566683
Q ss_pred CCCCCCCCCHHHHHHHHCCCCCCCCCEEEEECCHHHH-HHHHHCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHCCCCC
Q ss_conf 7677520478429977110499999389992575258-852207997102467144779976347899788887306999
Q 002521 625 PCLLPSWISQASARQRRGRAGRVQPGQCYHLYPRCVY-EAFAEYQLPELLRTPLNSLCLQIKSLQVGSIGEFLSAALQPP 703 (913)
Q Consensus 625 ~~l~~~~iS~a~~~QR~GRAGR~~~G~c~~L~s~~~~-~~l~~~~~pEi~r~~L~~~~L~lk~l~~~~i~~fl~~~l~pP 703 (913)
..|.+.|+|+++|.||+|||||.++|.||+||++.++ ..+.++..|||++.+|.+++|+++.++++++..| .+++||
T Consensus 409 ~~L~~~p~S~~s~~QR~GRaGR~~~G~~~~l~~~~~~~~~l~~~~~pEi~r~~L~~~~L~l~~~gi~~~~~f--~~~~~p 486 (773)
T 2xau_A 409 ESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEAFQKELIEQSYPEILRSNLSSTVLELKKLGIDDLVHF--DFMDPP 486 (773)
T ss_dssp EEEEEEECCHHHHHHHHHGGGSSSSEEEEESSCHHHHHHTSCSSCCCGGGGSCCHHHHHHHHHTTCCCGGGC--CCSSCC
T ss_pred CCCCCCCCCHHHHHHHCCCCCCCCCCEEEEEECHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHC--CCCCCC
T ss_conf 203300179999986534447899987999963788401230168975334758999999998499972324--355798
Q ss_pred CHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHH
Q ss_conf 25789999999998299878887560111235467880789998974320594899999740357898767712699999
Q 002521 704 EPLAVQNAVDFLKRIGALDEKENLTNLGKFLSMLPVDPKLGKMLVMGAIFRCFDPVLTIVSGLSVRDPFLLPQEKKNLAE 783 (913)
Q Consensus 704 ~~~~i~~al~~L~~lgald~~~~lT~lG~~l~~lpi~p~~~k~ll~~~~~~cl~~~l~I~a~ls~~~~f~~p~~~~~~~~ 783 (913)
+.+++..|++.|..+||||+++++|++|+.|+.+|++|++||||+.|+.++|++++++|+|+|+++++|+.|.++++.++
T Consensus 487 ~~~~i~~a~~~L~~lgald~~~~lT~lG~~~a~~pl~p~~~~~l~~~~~~~c~~~~l~i~a~ls~~~~f~~~~~~~~~~~ 566 (773)
T 2xau_A 487 APETMMRALEELNYLACLDDEGNLTPLGRLASQFPLDPMLAVMLIGSFEFQCSQEILTIVAMLSVPNVFIRPTKDKKRAD 566 (773)
T ss_dssp CHHHHHHHHHHHHHTTSBCTTSCBCHHHHHHTTSSSCHHHHHHHHHGGGGTCHHHHHHHHHHHTSCCCBCCCTTCHHHHH
T ss_pred CHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHH
T ss_conf 59999999999997687655788683056424336888999999862124741689999996036885518747899999
Q ss_pred HHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCC-HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 972014779720299999999999998521980-7889870157455998999999999999985998789999989999
Q 002521 784 IAKSRFSAKDYSDHMALVRAYEGWKDAEREGSG-YEYCWRNFLSAQTLQAIHSLRKQFTFILRDAGLLDEDGGNNKLSHN 862 (913)
Q Consensus 784 ~~k~~~~~~~~sD~l~~l~~~~~~~~~~~~~~~-~~~c~~n~L~~~~l~~~~~~r~ql~~~l~~~gl~~~~~~~n~~s~~ 862 (913)
.+|..|+ +..|||++++|+|++|......+.. .+||++||||+++|+++.++|.||..+|.+.|+...+...+ ...+
T Consensus 567 ~~~~~f~-~~~~D~~~~l~~~~~~~~~~~~~~~~~~~c~~~~l~~~~l~~~~~~~~ql~~~~~~~~~~~~~~~~~-~~~~ 644 (773)
T 2xau_A 567 DAKNIFA-HPDGDHITLLNVYHAFKSDEAYEYGIHKWCRDHYLNYRSLSAADNIRSQLERLMNRYNLELNTTDYE-SPKY 644 (773)
T ss_dssp HHHHTTC-CTTBHHHHHHHHHHHHTSHHHHHHCHHHHHHHTTBCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCTT-STTH
T ss_pred HHHHHCC-CCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC-CHHH
T ss_conf 9998506-8898599999999999870222106899999838899999999999999999987428875777777-3206
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCE-EEECCCCCCCCC
Q ss_conf 99999999871123442111467865078503890-898478844767
Q 002521 863 QSLVRAVICSGLFPGITSVVHRETSMSFKTMDDGQ-VFLYAVSVQVIV 909 (913)
Q Consensus 863 ~~li~~~i~ag~ypnva~~~~~~~~~~y~t~~~~~-V~iHpsSvl~~~ 909 (913)
+..|+++||+|||+|||+... ....|+++.+++ |+|||+|+|+..
T Consensus 645 ~~~i~~~l~~g~~~~~a~~~~--~~~~y~~~~~~~~~~ihp~s~l~~~ 690 (773)
T 2xau_A 645 FDNIRKALASGFFMQVAKKRS--GAKGYITVKDNQDVLIHPSTVLGHD 690 (773)
T ss_dssp HHHHHHHHHHHHTTSEEEECC--C--CEEETTTCCEEEECTTCCCCTT
T ss_pred HHHHHHHHHHHCHHHHEEECC--CCCCCEEEECCCEEEECCCCCCCCC
T ss_conf 999999999867375514346--7874157337977998898646799
No 2
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=1.00 E-value=1 Score=469.37 Aligned_cols=533 Identities=16% Similarity=0.127 Sum_probs=366.8
Q ss_pred CHHHHHHHHHCCCCCHHHHHHHHHH-HHCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHH
Q ss_conf 1002278631189968999999999-991991999927970389699999999999818998229997510498999999
Q 002521 237 PEGNKMLDFRKSLPSFKEKERLLQA-IARNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVS 315 (913)
Q Consensus 237 ~~~~~l~~~r~~lP~~~~q~~il~~-i~~~~~viI~a~TGSGKTt~~~~~ile~~~~~~~g~~~~Ilvt~P~r~lA~qia 315 (913)
+.....+....--..+++|.++++. +..+++++++||||||||+++++++++..... ..+++|++|+|+||.|++
T Consensus 17 ~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~----~~~il~i~P~r~La~q~~ 92 (715)
T 2va8_A 17 SNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKN----GGKAIYVTPLRALTNEKY 92 (715)
T ss_dssp HHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHS----CSEEEEECSCHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHHC----CCEEEEEECCHHHHHHHH
T ss_conf 9999999867998799999999999864899489984898759999999999999977----984999908599999999
Q ss_pred HHHHH--HHCCCCCCEEEEEEECCCCCCCCCEEEEEECHHHHHHHHCCC-CCCCCEEEEECCCCCCCC--CHHHHHHHHH
Q ss_conf 99998--829986627613772145579983099980078899980599-999831999536444674--1479999999
Q 002521 316 ERVSA--ERGEPLGETVGYKVRLEGMKGKNTHLLFCTSGILLRRLLSDH-NLNGVTHVFVDEIHERGM--NEDFLLIVLK 390 (913)
Q Consensus 316 ~ri~~--e~~~~~g~~vGy~vr~e~~~~~~~~Iiv~T~g~Ll~~l~~~~-~L~~~~~IIIDEaHer~~--~~d~ll~~lk 390 (913)
+++.. ..|..++..+|+..+.+... .+++|+|+|||+|.+.+..++ .+.++++|||||+|+.+- ....+..++.
T Consensus 93 ~~~~~~~~~g~~v~~~~G~~~~~~~~~-~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~~~~~l~~i~~ 171 (715)
T 2va8_A 93 LTFKDWELIGFKVAMTSGDYDTDDAWL-KNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELHYLNDPERGPVVESVTI 171 (715)
T ss_dssp HHHGGGGGGTCCEEECCSCSSSCCGGG-GGCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGGGGGCTTTHHHHHHHHH
T ss_pred HHHHHHHCCCCEEEEEECCCCCCHHHC-CCCCEEEECHHHHHHHHHCCHHHHHCCCEEEEECHHHCCCCCCCHHHHHHHH
T ss_conf 999876527988999848977762013-7999999858999999967855764369899953555278662229999998
Q ss_pred HHCCCCCCCEEEEECCCC-CHHHHHHHHCCCCEECCCCCCCCCEEEEHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 867568665189804446-8888973619999550489402513565044786410444566645411456677776421
Q 002521 391 DLLPRRRDLRLILMSATL-NAELFSNYFGGAPTIHIPGFTYPVQAHFLEDVLEMTGYKLTSLNQVDDYGQEKLWKTQRQL 469 (913)
Q Consensus 391 ~ll~~~~~~kiIlmSATl-~~~~~~~yf~~~~vi~i~~~~~pv~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (913)
. .+++++|+||||+ +.+.+..||+ ++.+..+++++|+..++.........+..
T Consensus 172 ~----~~~~~ii~lSATl~n~~~~~~~l~-~~~~~~~~r~~~l~~~~~~~~~~~~~~~~--------------------- 225 (715)
T 2va8_A 172 R----AKRRNLLALSATISNYKQIAKWLG-AEPVATNWRPVPLIEGVIYPERKKKEYNV--------------------- 225 (715)
T ss_dssp H----HHTSEEEEEESCCTTHHHHHHHHT-CEEEECCCCSSCEEEEEEEECSSTTEEEE---------------------
T ss_pred H----CCCCCEEEECCCCCCHHHHHHHHC-CCCCCCCCCCCCCEEEEEECCCCCCCEEE---------------------
T ss_conf 6----536728997178799999999849-97457999988746888835876654046---------------------
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHH
Q ss_conf 11234545899999997202445553244421001222323323499999988630699969998299679999999997
Q 002521 470 LPRKRKNQITALVEDALHKSNFENYSSRARDSLASWTADCIGFNLIEAVLCHICRKECPGAVLVFMTGWEDISCLRDQLK 549 (913)
Q Consensus 470 ~~~~~~~~i~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~ 549 (913)
. +.......+ ...+.+...+.+++ ..++++||||+++++++.++..|.
T Consensus 226 --------------------~---~~~~~~~~~-------~~~~~~~~~~~~~~--~~~~~~LVF~~s~~~~~~~a~~L~ 273 (715)
T 2va8_A 226 --------------------I---FKDNTTKKV-------HGDDAIIAYTLDSL--SKNGQVLVFRNSRKMAESTALKIA 273 (715)
T ss_dssp --------------------E---ETTSCEEEE-------ESSSHHHHHHHHHH--TTTCCEEEECSSHHHHHHHHHHHH
T ss_pred --------------------E---CCCCHHHHC-------CCCHHHHHHHHHHH--HCCCCEEEEECCHHHHHHHHHHHH
T ss_conf --------------------5---276044321-------34438999999998--669977999798899999999999
Q ss_pred CCCCC---CC--------------------------CCCEEEEEECCCCCHHHHHHHHCCCCCCCCEEEEECCHHHHCCC
Q ss_conf 49998---99--------------------------99718998038999588998840089996279996102220477
Q 002521 550 SHPLL---GD--------------------------PNRVLLLTCHGSMPTSEQKFIFEKAPPNIRKIVLATNMAEASIT 600 (913)
Q Consensus 550 ~~~~~---~~--------------------------~~~~~v~~lHs~l~~~er~~v~~~f~~g~~kVIvATniae~GId 600 (913)
..... .. .....+.++||+|+.++|..+++.|++|.++|||||+++++|||
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gid 353 (715)
T 2va8_A 274 NYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVN 353 (715)
T ss_dssp HTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSC
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHCCCCEEEEECHHHHCCCC
T ss_conf 98765428867789999999986634553229999999668788789999999999999998699859997808766168
Q ss_pred CCCEEEEEECCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHCCCCCCC---CCEEEEECCHHH-HHHHHH---CCCCCCC
Q ss_conf 798679993899862110489997767752047842997711049999---938999257525-885220---7997102
Q 002521 601 INDIVFVVDCGKAKETTYDALNNTPCLLPSWISQASARQRRGRAGRVQ---PGQCYHLYPRCV-YEAFAE---YQLPELL 673 (913)
Q Consensus 601 IP~V~~VId~g~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRAGR~~---~G~c~~L~s~~~-~~~l~~---~~~pEi~ 673 (913)
+|++++||+. ...||+..+.. ..|+|.++|.||+|||||.+ +|.||+++++.. +..+.+ ...||+.
T Consensus 354 ip~~~~VI~~----~~~~d~~~~~~---~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~~~~~~~l~~~~e~~ 426 (715)
T 2va8_A 354 LPARTVIIGD----IYRFNKKIAGY---YDEIPIMEYKQMSGRAGRPGFDQIGESIVVVRDKEDVDRVFKKYVLSDVEPI 426 (715)
T ss_dssp CCBSEEEECC----C-----------------CHHHHHHHHTTBCCTTTCSCEEEEEECSCGGGHHHHHHHTTSSCCCCC
T ss_pred CCCEEEEEEC----CEECCCCCCCC---CCCCCHHHHHHHHHHCCCCCCCCCCEEEEEECCCHHHHHHHHHHHCCCCCCC
T ss_conf 8854999918----75644667778---7759999999984242799888875699996780679999999970899873
Q ss_pred CCCHHH------HHHHHHHCCCC----CHHHHHHH-CCC-CCCHHHHHHHHHHHHHCCCCCCCC---CCCCCCCCCCCCC
Q ss_conf 467144------77997634789----97888873-069-992578999999999829987888---7560111235467
Q 002521 674 RTPLNS------LCLQIKSLQVG----SIGEFLSA-ALQ-PPEPLAVQNAVDFLKRIGALDEKE---NLTNLGKFLSMLP 738 (913)
Q Consensus 674 r~~L~~------~~L~lk~l~~~----~i~~fl~~-~l~-pP~~~~i~~al~~L~~lgald~~~---~lT~lG~~l~~lp 738 (913)
+.++.. .++.+...+.. ++..|+.. ++. +|+...+..+++.|...|+|+.++ .+|++|+.++.+|
T Consensus 427 ~s~l~~~~~l~~~~l~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~al~~L~~~g~i~~~~~~~~~t~lG~~~~~~~ 506 (715)
T 2va8_A 427 ESKLGSERAFYTFLLGILSAEGNLSEKQLENFAYESLLAKQLVDVYFDRAIRWLLEHSFIKEEGNTFALTNFGKRVADLY 506 (715)
T ss_dssp CCSCCSHHHHHHHHHHHHHHHCSEEHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHTTSEEECSSEEEECHHHHHHHHHT
T ss_pred EECCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCEEECCCEEEECHHHHHHHHHC
T ss_conf 53378666799999999851566889999999985078764263889999999988849766698686676899999974
Q ss_pred CCHHHHHHHHHHHHC---CCHHHHHHHHHHCC-CCCCCCCCHHHHHHHHHHH---CC-CCCCC-----HHH---HHHHHH
Q ss_conf 880789998974320---59489999974035-7898767712699999972---01-47797-----202---999999
Q 002521 739 VDPKLGKMLVMGAIF---RCFDPVLTIVSGLS-VRDPFLLPQEKKNLAEIAK---SR-FSAKD-----YSD---HMALVR 802 (913)
Q Consensus 739 i~p~~~k~ll~~~~~---~cl~~~l~I~a~ls-~~~~f~~p~~~~~~~~~~k---~~-~~~~~-----~sD---~l~~l~ 802 (913)
++|++++|++.+... .|..+++.|+|..+ +.++++.|.++....+... .. +.... +.+ ++...-
T Consensus 507 ~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~e~~~~~~r~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 586 (715)
T 2va8_A 507 INPFTADIIRKGLEGHKASCELAYLHLLAFTPDGPLVSVGRNEEEELIELLEDLDCELLIEEPYEEDEYSLYINALKVAL 586 (715)
T ss_dssp CCHHHHHHHHHHHHHSCCCCHHHHHHHHHHSTTSCCCCCCHHHHHHHHHHHTTCSSCCSSCCCSSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCHHHCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 89867999999865425787899999952684334576486789999999985211111366654310234577799999
Q ss_pred HHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf 9999999852198078898701574559989999999999
Q 002521 803 AYEGWKDAEREGSGYEYCWRNFLSAQTLQAIHSLRKQFTF 842 (913)
Q Consensus 803 ~~~~~~~~~~~~~~~~~c~~n~L~~~~l~~~~~~r~ql~~ 842 (913)
+.+.|.+. .....+|.+..+....+..+.+....+..
T Consensus 587 ll~~~~~~---~~~~~i~~~y~~~~gdl~~l~~~a~~l~~ 623 (715)
T 2va8_A 587 IMKDWMDE---VDEDTILSKYNIGSGDLRNMVETMDWLTY 623 (715)
T ss_dssp HHHHHHTT---CCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCC---CCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 99999849---98789999978982449999999999999
No 3
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=1.00 E-value=1 Score=455.41 Aligned_cols=515 Identities=17% Similarity=0.187 Sum_probs=365.1
Q ss_pred CCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHH--HHCCCCC
Q ss_conf 96899999999999199199992797038969999999999981899822999751049899999999998--8299866
Q 002521 250 PSFKEKERLLQAIARNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVSA--ERGEPLG 327 (913)
Q Consensus 250 P~~~~q~~il~~i~~~~~viI~a~TGSGKTt~~~~~ile~~~~~~~g~~~~Ilvt~P~r~lA~qia~ri~~--e~~~~~g 327 (913)
..+++|.++++.+..+++++++||||||||+++++++++.... + .+++|++|+|+||.|+++++.. ..|..++
T Consensus 25 ~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~---~--~~~l~i~P~r~La~q~~~~~~~~~~~g~~v~ 99 (702)
T 2p6r_A 25 ELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIK---G--GKSLYVVPLRALAGEKYESFKKWEKIGLRIG 99 (702)
T ss_dssp CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHT---T--CCEEEEESSHHHHHHHHHHHTTTTTTTCCEE
T ss_pred CCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHH---C--CCEEEEECCHHHHHHHHHHHHHHHHCCCEEE
T ss_conf 8999999999998389968998689617999999999999986---8--9599993709999999999997770498899
Q ss_pred CEEEEEEECCCCCCCCCEEEEEECHHHHHHHHCCC-CCCCCEEEEECCCCC-----CCCCHHHHHHHHHHHCCCCCCCEE
Q ss_conf 27613772145579983099980078899980599-999831999536444-----674147999999986756866518
Q 002521 328 ETVGYKVRLEGMKGKNTHLLFCTSGILLRRLLSDH-NLNGVTHVFVDEIHE-----RGMNEDFLLIVLKDLLPRRRDLRL 401 (913)
Q Consensus 328 ~~vGy~vr~e~~~~~~~~Iiv~T~g~Ll~~l~~~~-~L~~~~~IIIDEaHe-----r~~~~d~ll~~lk~ll~~~~~~ki 401 (913)
..+|+..+.+... .+++|+|+|||++...+..++ .+.++++|||||+|+ |+...+.++..++. .++++++
T Consensus 100 ~~~G~~~~~~~~~-~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~---~~~~~~i 175 (702)
T 2p6r_A 100 ISTGDYESRDEHL-GDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRR---MNKALRV 175 (702)
T ss_dssp EECSSCBCCSSCS-TTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGGGGCTTTHHHHHHHHHHHHH---HCTTCEE
T ss_pred EEECCCCCCHHHC-CCCCEEEECHHHHHHHHHCCHHHHHHCCEEEEEEEEECCCCCCCCHHHHHHHHHHH---CCCCCEE
T ss_conf 9838877664352-69999998989999999757557762598988502554787765279999999984---3867659
Q ss_pred EEECCCCC-HHHHHHHHCCCCEECCCCCCCCCEEEEHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHH
Q ss_conf 98044468-88897361999955048940251356504478641044456664541145667777642111234545899
Q 002521 402 ILMSATLN-AELFSNYFGGAPTIHIPGFTYPVQAHFLEDVLEMTGYKLTSLNQVDDYGQEKLWKTQRQLLPRKRKNQITA 480 (913)
Q Consensus 402 IlmSATl~-~~~~~~yf~~~~vi~i~~~~~pv~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 480 (913)
|+||||++ .+.+.+|++ ++.+..+++++|+..++..... ..+. +. ..
T Consensus 176 i~lSATl~n~~~~~~~l~-~~~~~~~~r~~~l~~~~~~~~~--~~~~--------~~--------------~~------- 223 (702)
T 2p6r_A 176 IGLSATAPNVTEIAEWLD-ADYYVSDWRPVPLVEGVLCEGT--LELF--------DG--------------AF------- 223 (702)
T ss_dssp EEEECCCTTHHHHHHHTT-CEEEECCCCSSCEEEEEECSSE--EEEE--------ET--------------TE-------
T ss_pred EEECCCCCCHHHHHHHHC-CCCCCCCCCCCCCEEEEEECCE--EECC--------CC--------------CH-------
T ss_conf 997887689999999848-9723688877664688861782--3105--------76--------------30-------
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHCC--CCCCCC-
Q ss_conf 99999720244555324442100122232332349999998863069996999829967999999999749--998999-
Q 002521 481 LVEDALHKSNFENYSSRARDSLASWTADCIGFNLIEAVLCHICRKECPGAVLVFMTGWEDISCLRDQLKSH--PLLGDP- 557 (913)
Q Consensus 481 ~v~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~--~~~~~~- 557 (913)
. ..... . +...+.... ..++++||||+++++++.++..|... ..+...
T Consensus 224 ----------------~--------~~~~~--~-~~~~~~~~~--~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~ 274 (702)
T 2p6r_A 224 ----------------S--------TSRRV--K-FEELVEECV--AENGGVLVFESTRRGAEKTAVKLSAITAKYVENEG 274 (702)
T ss_dssp ----------------E--------EEEEC--C-HHHHHHHHH--HTTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSS
T ss_pred ----------------H--------HHHHH--H-HHHHHHHHH--HCCCCEEEECCCHHHHHHHHHHHHHHHHHHCCHHH
T ss_conf ----------------1--------44454--6-999999999--66997899838878999999999999876469588
Q ss_pred --------------------CCEEEEEECCCCCHHHHHHHHCCCCCCCCEEEEECCHHHHCCCCCCEEEEEECCCCCCEE
Q ss_conf --------------------971899803899958899884008999627999610222047779867999389986211
Q 002521 558 --------------------NRVLLLTCHGSMPTSEQKFIFEKAPPNIRKIVLATNMAEASITINDIVFVVDCGKAKETT 617 (913)
Q Consensus 558 --------------------~~~~v~~lHs~l~~~er~~v~~~f~~g~~kVIvATniae~GIdIP~V~~VId~g~~k~~~ 617 (913)
.+..+.++||+|+.++|..+++.|++|.++|||||+++++|||+|++++||+. ...
T Consensus 275 ~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~----~~~ 350 (702)
T 2p6r_A 275 LEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRS----LYR 350 (702)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECC----SEE
T ss_pred HHHHHHHHCCCCCCHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCEEEEECC----CEE
T ss_conf 9999986245532199999984692886699999999999999987998499978388665788733999847----623
Q ss_pred ECCCCCCCCCCCCCCCHHHHHHHHCCCCCCC---CCEEEEECCHHHHHHHHH---CCCCCCCCCCHHH------HHHHHH
Q ss_conf 0489997767752047842997711049999---938999257525885220---7997102467144------779976
Q 002521 618 YDALNNTPCLLPSWISQASARQRRGRAGRVQ---PGQCYHLYPRCVYEAFAE---YQLPELLRTPLNS------LCLQIK 685 (913)
Q Consensus 618 yd~~~~~~~l~~~~iS~a~~~QR~GRAGR~~---~G~c~~L~s~~~~~~l~~---~~~pEi~r~~L~~------~~L~lk 685 (913)
|| +. ..|+|.+++.||+|||||.+ +|.||+++++..++.+.+ ...||+.+.+|.. .++.+.
T Consensus 351 yd---~~----~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~~~~~~l~~~~e~~~s~l~~~~~l~~~~l~~~ 423 (702)
T 2p6r_A 351 FD---GY----SKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRDREIAVKRYIFGEPERITSKLGVETHLRFHSLSII 423 (702)
T ss_dssp ES---SS----EEECCHHHHHHHHTTBSCTTTCSCEEEEEECCGGGHHHHHHTTTSSCCCCCCCCCCSHHHHHHHHHHHH
T ss_pred EC---CC----CCCCCHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHCCCCCCCEEECCCCHHHHHHHHHHH
T ss_conf 07---87----775899999998433279999987369999557318999999960899884651686055899999999
Q ss_pred HCCC-CC---HHHHHHHC-----CCCCCHHHHHHHHHHHHHCCCCCCC--CCCCCCCCCCCCCCCCHHHHHHHHHHHHC-
Q ss_conf 3478-99---78888730-----6999257899999999982998788--87560111235467880789998974320-
Q 002521 686 SLQV-GS---IGEFLSAA-----LQPPEPLAVQNAVDFLKRIGALDEK--ENLTNLGKFLSMLPVDPKLGKMLVMGAIF- 753 (913)
Q Consensus 686 ~l~~-~~---i~~fl~~~-----l~pP~~~~i~~al~~L~~lgald~~--~~lT~lG~~l~~lpi~p~~~k~ll~~~~~- 753 (913)
..+. .+ +..|+... ..+|..+.+..+++.|...|+|+.+ ..+|++|+.++.+|++|+.++|++.+...
T Consensus 424 ~~g~~~~~~~~~~~l~~t~~~~~~~~~~~~~~~~al~~L~~~g~i~~~~~~~~t~lG~~~~~~~~~~~~~~~~~~~~~~~ 503 (702)
T 2p6r_A 424 CDGYAKTLEELEDFFADTFFFKQNEISLSYELERVVRQLENWGMVVEAAHLAPTKLGSLVSRLYIDPLTGFIFHDVLSRM 503 (702)
T ss_dssp HHTSCSSHHHHHHHHHTSTTHHHHCCCCHHHHHHHHHHHHHTTSEEESSSEEECHHHHHHHHTTCCHHHHHHHHHHTTTC
T ss_pred HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCEECCCHHHHHHHHHHCCHHHHHHHHHHHHCC
T ss_conf 71778889999999985067775017899999999999998859428990664869999999857898999999974304
Q ss_pred -CCHHHHHHHHHHCC-CCCCCCCCHHHHHHHHHH-H--CCC------CCCCHH---HHHHHHHHHHHHHHHHHCCCCHHH
Q ss_conf -59489999974035-789876771269999997-2--014------779720---299999999999998521980788
Q 002521 754 -RCFDPVLTIVSGLS-VRDPFLLPQEKKNLAEIA-K--SRF------SAKDYS---DHMALVRAYEGWKDAEREGSGYEY 819 (913)
Q Consensus 754 -~cl~~~l~I~a~ls-~~~~f~~p~~~~~~~~~~-k--~~~------~~~~~s---D~l~~l~~~~~~~~~~~~~~~~~~ 819 (913)
.|...++.|+|..+ +.+.++.+.+ .+..+.. + ..+ ....+. .+....-+.+.|.+. ......
T Consensus 504 ~~~~~~~l~~i~~~~e~~~i~~r~~e-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~lL~~~~~~---~~l~~i 579 (702)
T 2p6r_A 504 ELSDIGALHLICRTPDMERLTVRKTD-SWVEEEAFRLRKELSYYPSDFSVEYDWFLSEVKTALCLKDWIEE---KDEDEI 579 (702)
T ss_dssp CCCHHHHHHHHHHSTTSCCCCCCTTT-HHHHHHHHHHGGGSSCCCCTTSTTHHHHHHHHHHHHHHHHHHTT---CCHHHH
T ss_pred CCCHHHHHHHHHCCCCCCCCCCCCCH-HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC---CCHHHH
T ss_conf 68789999995377444457778765-99999998654666678630000123456669999999999827---986889
Q ss_pred HHHHCCCHHHHHHHHHHHH----HHHHHHHHCCC
Q ss_conf 9870157455998999999----99999998599
Q 002521 820 CWRNFLSAQTLQAIHSLRK----QFTFILRDAGL 849 (913)
Q Consensus 820 c~~n~L~~~~l~~~~~~r~----ql~~~l~~~gl 849 (913)
|.+..+....++.+.+-.. .+..++...|.
T Consensus 580 ~~~~~~~~gdl~~i~~~a~~l~~a~~~i~~~~g~ 613 (702)
T 2p6r_A 580 CAKYGIAPGDLRRIVETAEWLSNAMNRIAEEVGN 613 (702)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCH
T ss_conf 9885776775999999999999999999997399
No 4
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=1.00 E-value=1 Score=434.93 Aligned_cols=464 Identities=17% Similarity=0.115 Sum_probs=327.2
Q ss_pred CCHHHHHHHHHCCCCCHHHHHHHHHH-HHCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHH
Q ss_conf 91002278631189968999999999-99199199992797038969999999999981899822999751049899999
Q 002521 236 SPEGNKMLDFRKSLPSFKEKERLLQA-IARNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAV 314 (913)
Q Consensus 236 ~~~~~~l~~~r~~lP~~~~q~~il~~-i~~~~~viI~a~TGSGKTt~~~~~ile~~~~~~~g~~~~Ilvt~P~r~lA~qi 314 (913)
++...+.+..+.-...+++|.++++. +..+++++++||||||||+++++++++.....+ .+++|++|+++||.|+
T Consensus 9 ~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~----~~~l~i~P~raLa~q~ 84 (720)
T 2zj8_A 9 DERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQG----GKAVYIVPLKALAEEK 84 (720)
T ss_dssp CHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHHC----SEEEEECSSGGGHHHH
T ss_pred CHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHCC----CEEEEECCCHHHHHHH
T ss_conf 989999998779988999999999998557994899869963799999999999998679----9899985969999999
Q ss_pred HHHHHH--HHCCCCCCEEEEEEECCCCCCCCCEEEEEECHHHHHHHHCCC-CCCCCEEEEECCCC-----CCCCCHHHHH
Q ss_conf 999998--829986627613772145579983099980078899980599-99983199953644-----4674147999
Q 002521 315 SERVSA--ERGEPLGETVGYKVRLEGMKGKNTHLLFCTSGILLRRLLSDH-NLNGVTHVFVDEIH-----ERGMNEDFLL 386 (913)
Q Consensus 315 a~ri~~--e~~~~~g~~vGy~vr~e~~~~~~~~Iiv~T~g~Ll~~l~~~~-~L~~~~~IIIDEaH-----er~~~~d~ll 386 (913)
+++++. ..|..++..+|. ...+.....+++|+|+||+++...+..+. .+.++++|||||+| +|+...+.++
T Consensus 85 ~~~~~~l~~~g~~v~~~~G~-~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll 163 (720)
T 2zj8_A 85 FQEFQDWEKIGLRVAMATGD-YDSKDEWLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLIGSRDRGATLEVIL 163 (720)
T ss_dssp HHHTGGGGGGTCCEEEECSC-SSCCCGGGGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHH
T ss_pred HHHHHHHHHCCCEEEEECCC-CCCCCCCCCCCCEEEECHHHHHHHHHCCHHHHHCCCEEEEECCCCCCCCCCCHHHHHHH
T ss_conf 99999887359779996389-77641214799999988899999997571466527989998985567876447999999
Q ss_pred HHHHHHCCCCCCCEEEEECCCC-CHHHHHHHHCCCCEECCCCCCCCCEEEEHHHHHHHHCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 9999867568665189804446-888897361999955048940251356504478641044456664541145667777
Q 002521 387 IVLKDLLPRRRDLRLILMSATL-NAELFSNYFGGAPTIHIPGFTYPVQAHFLEDVLEMTGYKLTSLNQVDDYGQEKLWKT 465 (913)
Q Consensus 387 ~~lk~ll~~~~~~kiIlmSATl-~~~~~~~yf~~~~vi~i~~~~~pv~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (913)
..++ ++.++|+||||+ +.+.+..|++ ++.+..++++.|+..++..+.. ..+..
T Consensus 164 ~~l~------~~~~ii~lSATl~n~~~~~~~l~-~~~~~~~~rp~~l~~~~~~~~~--~~~~~----------------- 217 (720)
T 2zj8_A 164 AHML------GKAQIIGLSATIGNPEELAEWLN-AELIVSDWRPVKLRRGVFYQGF--VTWED----------------- 217 (720)
T ss_dssp HHHB------TTBEEEEEECCCSCHHHHHHHTT-EEEEECCCCSSEEEEEEEETTE--EEETT-----------------
T ss_pred HHHH------CCCEEEEECCCCCCHHHHHHHHC-CCCCCCCCCCCCCEEEEEECCE--EECCC-----------------
T ss_conf 9864------07769997588689999999829-8603789888763688975781--31165-----------------
Q ss_pred HHHHCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHH
Q ss_conf 64211123454589999999720244555324442100122232332349999998863069996999829967999999
Q 002521 466 QRQLLPRKRKNQITALVEDALHKSNFENYSSRARDSLASWTADCIGFNLIEAVLCHICRKECPGAVLVFMTGWEDISCLR 545 (913)
Q Consensus 466 ~~~~~~~~~~~~i~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~ 545 (913)
... .. ...+..++.+.. ..++++||||+++++++.++
T Consensus 218 ------~~~-----------------------------~~------~~~~~~~~~~~~--~~~~~~LVF~~sr~~~~~~a 254 (720)
T 2zj8_A 218 ------GSI-----------------------------DR------FSSWEELVYDAI--RKKKGALIFVNMRRKAERVA 254 (720)
T ss_dssp ------SCE-----------------------------EE------CSSTTHHHHHHH--HTTCCEEEECSCHHHHHHHH
T ss_pred ------CCH-----------------------------HH------HHHHHHHHHHHH--HCCCCEEEEECCHHHHHHHH
T ss_conf ------320-----------------------------00------169999999998--67998899965879999999
Q ss_pred HHHHCCCC--CC------------------------CCCCEEEEEECCCCCHHHHHHHHCCCCCCCCEEEEECCHHHHCC
Q ss_conf 99974999--89------------------------99971899803899958899884008999627999610222047
Q 002521 546 DQLKSHPL--LG------------------------DPNRVLLLTCHGSMPTSEQKFIFEKAPPNIRKIVLATNMAEASI 599 (913)
Q Consensus 546 ~~L~~~~~--~~------------------------~~~~~~v~~lHs~l~~~er~~v~~~f~~g~~kVIvATniae~GI 599 (913)
..|..... .. ......+.++||+|+.++|..+++.|++|.++|||||+++++||
T Consensus 255 ~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gv 334 (720)
T 2zj8_A 255 LELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENFRKGIIKAVVATPTLSAGI 334 (720)
T ss_dssp HHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTSSCEEEECSTTGGGC
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCHHHCCC
T ss_conf 99999998745906689999999987516650889999851946324899999999999999779975999881866628
Q ss_pred CCCCEEEEEECCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHCCCCCCC---CCEEEEECCHHHHHH----HHHCCCCCC
Q ss_conf 7798679993899862110489997767752047842997711049999---938999257525885----220799710
Q 002521 600 TINDIVFVVDCGKAKETTYDALNNTPCLLPSWISQASARQRRGRAGRVQ---PGQCYHLYPRCVYEA----FAEYQLPEL 672 (913)
Q Consensus 600 dIP~V~~VId~g~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRAGR~~---~G~c~~L~s~~~~~~----l~~~~~pEi 672 (913)
|+|++++||+.+ ..||. . ...|+|.+++.||+|||||.+ +|.||.++++...+. +.....+++
T Consensus 335 dip~~~~VI~~~----~~yd~-~-----g~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~~~~~~~~~~~~~i 404 (720)
T 2zj8_A 335 NTPAFRVIIRDI----WRYSD-F-----GMERIPIIEVHQMLGRAGRPKYDEVGEGIIVSTSDDPREVMNHYIFGKPEKL 404 (720)
T ss_dssp CCCBSEEEECCS----EECCS-S-----SCEECCHHHHHHHHTTBCCTTTCSEEEEEEECSSSCHHHHHHHHTTSCCCCC
T ss_pred CCCCEEEEECCC----EEECC-C-----CCCCCCHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHCCCCCCC
T ss_conf 888528998487----24068-8-----8760899999998754489988887669999667109999999961899871
Q ss_pred CCC-----CHHHHHHHHHHCCCC----CHHHHHHH-CC------CCCCHHHHHHHHHHHHHCCCCC-CCC---CCCCCCC
Q ss_conf 246-----714477997634789----97888873-06------9992578999999999829987-888---7560111
Q 002521 673 LRT-----PLNSLCLQIKSLQVG----SIGEFLSA-AL------QPPEPLAVQNAVDFLKRIGALD-EKE---NLTNLGK 732 (913)
Q Consensus 673 ~r~-----~L~~~~L~lk~l~~~----~i~~fl~~-~l------~pP~~~~i~~al~~L~~lgald-~~~---~lT~lG~ 732 (913)
... .|...++.....+.. ++..|+.. ++ +++..+.+..+++.|...|+|+ .++ .+|++|+
T Consensus 405 ~s~l~~~~~l~~~ll~~i~~~~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~i~~~~~~~~~~t~lG~ 484 (720)
T 2zj8_A 405 FSQLSNESNLRSQVLALIATFGYSTVEEILKFISNTFYAYQRKDTYSLEEKIRNILYFLLENEFIEISLEDKIRPLSLGI 484 (720)
T ss_dssp CCCTTCHHHHHHHHHHHHHHSCCCSHHHHHHHHHTSHHHHHCSCCHHHHHHHHHHHHHHHHTTSEEECTTSCEEECHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCHHHHHCCCHHHHHHHHHHHHHHHHHCCCEEECCCCCEEECHHHH
T ss_conf 76568604399999999971778899999999982768774364578999999999999988793577898275576999
Q ss_pred CCCCCCCCHHHHHHHHHHHHC----CCHHHHHHHHHHCCC-CCCCCCCHHHHHHHH
Q ss_conf 235467880789998974320----594899999740357-898767712699999
Q 002521 733 FLSMLPVDPKLGKMLVMGAIF----RCFDPVLTIVSGLSV-RDPFLLPQEKKNLAE 783 (913)
Q Consensus 733 ~l~~lpi~p~~~k~ll~~~~~----~cl~~~l~I~a~ls~-~~~f~~p~~~~~~~~ 783 (913)
.++.+|++|..+++++.+... .|..+++.|+|+++. .+.|+.+.+.....+
T Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~e~~~i~~r~~e~~~l~~ 540 (720)
T 2zj8_A 485 RTAKLYIDPYTAKMFKDKMEEVVKDPNPIGIFHLISLTPDITPFNYSKREFERLEE 540 (720)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHHHSCCHHHHHHHHHTSTTCCCCCCCHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHH
T ss_conf 99997389999999999987642589888999975058532126637778999999
No 5
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=1.00 E-value=1 Score=355.23 Aligned_cols=465 Identities=14% Similarity=0.133 Sum_probs=299.9
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHH-CCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHH
Q ss_conf 00227863118996899999999999-19919999279703896999999999998189982299975104989999999
Q 002521 238 EGNKMLDFRKSLPSFKEKERLLQAIA-RNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSE 316 (913)
Q Consensus 238 ~~~~l~~~r~~lP~~~~q~~il~~i~-~~~~viI~a~TGSGKTt~~~~~ile~~~~~~~g~~~~Ilvt~P~r~lA~qia~ 316 (913)
.+..++..++.. .++.|.+++..+. .+++++++||||||||+++.++|++.+.... ..++++++|+|+||.|+++
T Consensus 915 ~~e~l~~~~f~~-fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~~---~~kavyi~P~raLa~q~~~ 990 (1724)
T 4f92_B 915 AFESLYQDKFPF-FNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSS---EGRCVYITPMEALAEQVYM 990 (1724)
T ss_dssp HHHTTTTTTCSB-CCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHCT---TCCEEEECSCHHHHHHHHH
T ss_pred HHHHHHHHCCCC-CCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCC---CCEEEEECCHHHHHHHHHH
T ss_conf 899999726789-997999999999668996899937988746999999999998589---9879998682999999999
Q ss_pred HHHHHHCCCCCCEEEEEEECC---CCCCCCCEEEEEECHHHHHHHHCCC---CCCCCEEEEECCCCC----CCCCHHHHH
Q ss_conf 999882998662761377214---5579983099980078899980599---999831999536444----674147999
Q 002521 317 RVSAERGEPLGETVGYKVRLE---GMKGKNTHLLFCTSGILLRRLLSDH---NLNGVTHVFVDEIHE----RGMNEDFLL 386 (913)
Q Consensus 317 ri~~e~~~~~g~~vGy~vr~e---~~~~~~~~Iiv~T~g~Ll~~l~~~~---~L~~~~~IIIDEaHe----r~~~~d~ll 386 (913)
.+.+.++..+|..|+...... .....+++|+|||||++...+.+.. .+.++++||+||+|. ||...+..+
T Consensus 991 ~~~~~f~~~~g~~V~~ltGd~~~~~~~~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d~rg~~le~il 1070 (1724)
T 4f92_B 991 DWYEKFQDRLNKKVVLLTGETSTDLKLLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGENGPVLEVIC 1070 (1724)
T ss_dssp HHHHHHTTTSCCCEEECCSCHHHHHHHHHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGSTTHHHHHHHH
T ss_pred HHHHHHCHHCCCEEEEEECCCCCCHHHCCCCCEEEECHHHHHHHHHCCCCCCCCCEEEEEEEECHHHCCCCCCCCHHHHH
T ss_conf 99998442209789999799781211158999999887999999838444641352318970101104787876399999
Q ss_pred HHHHHHC-CCCCCCEEEEECCCC-CHHHHHHHHCCC--CEECCC--CCCCCCEEEEHHHHHHHHCCCCCCCCCCCCHHHH
Q ss_conf 9999867-568665189804446-888897361999--955048--9402513565044786410444566645411456
Q 002521 387 IVLKDLL-PRRRDLRLILMSATL-NAELFSNYFGGA--PTIHIP--GFTYPVQAHFLEDVLEMTGYKLTSLNQVDDYGQE 460 (913)
Q Consensus 387 ~~lk~ll-~~~~~~kiIlmSATl-~~~~~~~yf~~~--~vi~i~--~~~~pv~~~yl~~~~~~~~~~~~~~~~~~~~~~~ 460 (913)
..++.+. ...+++|+|+||||+ |++.+++|++.. .++.+. .|+.|.+.+... +.... ...
T Consensus 1071 ~rl~~i~~~~~~~~riI~lSATl~N~~dla~WL~~~~~~~~~~~~~~RPvpL~~~i~~-------~~~~~-------~~~ 1136 (1724)
T 4f92_B 1071 SRMRYISSQIERPIRIVALSSSLSNAKDVAHWLGCSATSTFNFHPNVRPVPLELHIQG-------FNISH-------TQT 1136 (1724)
T ss_dssp HHHHHHHHTTSSCCEEEEEESCBTTHHHHHHHHTCCSTTEEECCGGGCSSCEEEEEEE-------ECCCS-------HHH
T ss_pred HHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHCCCCCCEEEECCCCCCCCEEEEEEE-------CCCCC-------CHH
T ss_conf 9999998636888639999288899999999867998775894888888870899980-------36777-------166
Q ss_pred HHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCHHH
Q ss_conf 67777642111234545899999997202445553244421001222323323499999988630699969998299679
Q 002521 461 KLWKTQRQLLPRKRKNQITALVEDALHKSNFENYSSRARDSLASWTADCIGFNLIEAVLCHICRKECPGAVLVFMTGWED 540 (913)
Q Consensus 461 ~~~~~~~~~~~~~~~~~i~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~li~~ll~~i~~~~~~g~iLVFl~~~~~ 540 (913)
.. ... ...+...+......+++||||+++..
T Consensus 1137 ~~----------------~~~---------------------------------~~~~~~~i~~~~~~~~~lVF~~sR~~ 1167 (1724)
T 4f92_B 1137 RL----------------LSM---------------------------------AKPVYHAITKHSPKKPVIVFVPSRKQ 1167 (1724)
T ss_dssp HH----------------HTT---------------------------------HHHHHHHHHHHCSSSCEEEEESSHHH
T ss_pred HH----------------HHH---------------------------------CCHHHHHHHHHCCCCCEEEECCCHHH
T ss_conf 66----------------532---------------------------------01499999985379972155788899
Q ss_pred HHHHHHHHHCC----C----CC--------------CC-----CCCEEEEEECCCCCHHHHHHHHCCCCCCCCEEEEECC
Q ss_conf 99999999749----9----98--------------99-----9971899803899958899884008999627999610
Q 002521 541 ISCLRDQLKSH----P----LL--------------GD-----PNRVLLLTCHGSMPTSEQKFIFEKAPPNIRKIVLATN 593 (913)
Q Consensus 541 i~~l~~~L~~~----~----~~--------------~~-----~~~~~v~~lHs~l~~~er~~v~~~f~~g~~kVIvATn 593 (913)
++.++..|... . .. .+ .....|..|||+|++.+|..+++.|++|.++|||||+
T Consensus 1168 ~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~hHagL~~~~R~~VE~lF~~G~i~VLvaT~ 1247 (1724)
T 4f92_B 1168 TRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQVVVASR 1247 (1724)
T ss_dssp HHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEECTTSCHHHHHHHHHHHHHTSBCEEEEEG
T ss_pred HHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHCCCHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHCCCCEEEEECH
T ss_conf 99999999988762643022201339999999864142889998747889977999999999999999779984999886
Q ss_pred HHHHCCCCCCEEEEEECCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHCCCCCCC---CCEEEEECCHHHHHHHHH-CCC
Q ss_conf 2220477798679993899862110489997767752047842997711049999---938999257525885220-799
Q 002521 594 MAEASITINDIVFVVDCGKAKETTYDALNNTPCLLPSWISQASARQRRGRAGRVQ---PGQCYHLYPRCVYEAFAE-YQL 669 (913)
Q Consensus 594 iae~GIdIP~V~~VId~g~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRAGR~~---~G~c~~L~s~~~~~~l~~-~~~ 669 (913)
++++|||+|++.+||.. ...||.... ...+.+..+|.||+|||||.+ .|.|+.+......+.+.. ...
T Consensus 1248 tlA~GVnlPa~~VVI~~----~~~~dg~~~----~~~~~s~~~~~Qm~GRAGR~g~d~~G~avll~~~~~~~~~~~ll~~ 1319 (1724)
T 4f92_B 1248 SLCWGMNVAAHLVIIMD----TQYYNGKIH----AYVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQGSKKDFFKKFLYE 1319 (1724)
T ss_dssp GGSSSCCCCBSEEEEEC----SEEEETTTT----EEEECCHHHHHHHHTTBCCTTTCSCEEEEEEEEGGGHHHHHHHTTS
T ss_pred HHHCCCCCCCCEEEEEC----CCCCCCCCC----CCCCCCHHHHHHHHCCCCCCCCCCCEEEEEEECCHHHHHHHHHHCC
T ss_conf 99757898861899956----711367555----6677999999976151357887886289999654577899997379
Q ss_pred CCCCCCCHH----HHHHHHHHCC-CCCH---HHHHHH------CCC----------------CCCHHHHHHHHHHHHHCC
Q ss_conf 710246714----4779976347-8997---888873------069----------------992578999999999829
Q 002521 670 PELLRTPLN----SLCLQIKSLQ-VGSI---GEFLSA------ALQ----------------PPEPLAVQNAVDFLKRIG 719 (913)
Q Consensus 670 pEi~r~~L~----~~~L~lk~l~-~~~i---~~fl~~------~l~----------------pP~~~~i~~al~~L~~lg 719 (913)
|+.....|. +.++.....+ +.+. .+|+.. ... ....+.++++++.|...|
T Consensus 1320 ~~pveS~L~~~l~~~l~~eI~~~~i~~~~d~~~~l~~Tfl~~r~~~nP~~y~l~~~~~~~~~~~l~~lv~~~l~~L~~~~ 1399 (1724)
T 4f92_B 1320 PLPVESHLDHCMHDHFNAEIVTKTIENKQDAVDYLTWTFLYRRMTQNPNYYNLQGISHRHLSDHLSELVEQTLSDLEQSK 1399 (1724)
T ss_dssp CBCCCCCGGGSCHHHHHHHHHTTSCCBHHHHHHHHTTSSHHHHHHHSGGGTTCSCCSHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCEEEECCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 97035454411178999999854348899999999730799987307320256653355678999999999999999888
Q ss_pred CCC--CCC--CCCCCCCCCCCCCCCHHHHHHHHHHHHCCC-HHHHHHHHHHCC-CCCCCCCCHH
Q ss_conf 987--888--756011123546788078999897432059-489999974035-7898767712
Q 002521 720 ALD--EKE--NLTNLGKFLSMLPVDPKLGKMLVMGAIFRC-FDPVLTIVSGLS-VRDPFLLPQE 777 (913)
Q Consensus 720 ald--~~~--~lT~lG~~l~~lpi~p~~~k~ll~~~~~~c-l~~~l~I~a~ls-~~~~f~~p~~ 777 (913)
+|. +++ .+|++|++++.++++|..++++..+...++ +..+|.+++..+ +.+..+...+
T Consensus 1400 ~I~~~~~~~l~~T~lG~i~s~~yi~~~t~~~~~~~l~~~~~~~~~L~il~~a~ef~~i~~R~~E 1463 (1724)
T 4f92_B 1400 CISIEDEMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKVRGLIEIISNAAEYENIPIRHHE 1463 (1724)
T ss_dssp SEEEETTTEEEECHHHHHHHHTTCCHHHHHHHHHHCCTTCCHHHHHHHHHTSGGGTTCCCCTTH
T ss_pred CEEECCCCCEEECHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCCCH
T ss_conf 9998699878666899999997789999999998544369888899884078454566436068
No 6
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=353.96 Aligned_cols=379 Identities=17% Similarity=0.147 Sum_probs=245.4
Q ss_pred HHHCCCCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHC
Q ss_conf 63118996899999999999199199992797038969999999999981899822999751049899999999998829
Q 002521 244 DFRKSLPSFKEKERLLQAIARNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVSAERG 323 (913)
Q Consensus 244 ~~r~~lP~~~~q~~il~~i~~~~~viI~a~TGSGKTt~~~~~ile~~~~~~~g~~~~Ilvt~P~r~lA~qia~ri~~e~~ 323 (913)
.....++.+++|.++++++..+++++++||||||||+++.++++..+. .+ .++++++|+++|+.|+++++...++
T Consensus 178 ~~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~---~g--~rvlvl~PtraLa~Q~~~~l~~~~~ 252 (1108)
T 3l9o_A 178 ARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLK---NK--QRVIYTSPIKALSNQKYRELLAEFG 252 (1108)
T ss_dssp SSCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHH---TT--CEEEEEESSHHHHHHHHHHHHHHTS
T ss_pred HHHCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHH---CC--CEEEEECCCHHHHHHHHHHHHHHHC
T ss_conf 984799999999999999976998899889999719999999999975---59--7499990849999999999999828
Q ss_pred CCCCCEEEEEEECCCCCCCCCEEEEEECHHHHHHHHCCC-CCCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCEEE
Q ss_conf 986627613772145579983099980078899980599-9998319995364446741479999999867568665189
Q 002521 324 EPLGETVGYKVRLEGMKGKNTHLLFCTSGILLRRLLSDH-NLNGVTHVFVDEIHERGMNEDFLLIVLKDLLPRRRDLRLI 402 (913)
Q Consensus 324 ~~~g~~vGy~vr~e~~~~~~~~Iiv~T~g~Ll~~l~~~~-~L~~~~~IIIDEaHer~~~~d~ll~~lk~ll~~~~~~kiI 402 (913)
.+|+. ..+.....+++|+|+|||+|++++..+. .+.++++|||||||.. .+..+...+...+....+++++|
T Consensus 253 -----~Vgll-tGd~~~~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH~l-~d~~rg~~~e~ii~~l~~~~qvl 325 (1108)
T 3l9o_A 253 -----DVGLM-TGDITINPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYM-RDKERGVVWEETIILLPDKVRYV 325 (1108)
T ss_dssp -----SEEEE-CSSCBCCCSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGGGT-TSHHHHHHHHHHHHHSCTTSEEE
T ss_pred -----CCCEE-ECCCCCCCCCCEEEECHHHHHHHHHCCCCCCCCCCEEEEHHHHHC-CCCCHHHHHHHHHHHCCCCCEEE
T ss_conf -----92189-676526899998996769999999747543223789987002120-23006899999998647776499
Q ss_pred EECCCC-CHHHHHHHHC-----CCCEECCCCCCCCCEEEEHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCHHHHHH
Q ss_conf 804446-8888973619-----9995504894025135650447864104445666454114566777764211123454
Q 002521 403 LMSATL-NAELFSNYFG-----GAPTIHIPGFTYPVQAHFLEDVLEMTGYKLTSLNQVDDYGQEKLWKTQRQLLPRKRKN 476 (913)
Q Consensus 403 lmSATl-~~~~~~~yf~-----~~~vi~i~~~~~pv~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (913)
+||||+ +...+..|++ ...++....++.|+..++............... ..+............. ...
T Consensus 326 ~lSATipn~~e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~vd~~---~~~~~~~~~~~~~~l~-~~~-- 399 (1108)
T 3l9o_A 326 FLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEK---STFREENFQKAMASIS-NQI-- 399 (1108)
T ss_dssp EEECSCSSCHHHHHHHHHHTCSCEEEEEECCCSSCEEEEEEETTSSCCEEEEETT---TEECHHHHHHHHTTC-------
T ss_pred EECCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCEEEEEECCCCCEEEEECCC---CCHHHHHHHHHHHHHH-HHH--
T ss_conf 9728889879999999851589827983478755406898624776425641442---2011566899999987-541--
Q ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHCCCCCCC
Q ss_conf 58999999972024455532444210012223233234999999886306999699982996799999999974999899
Q 002521 477 QITALVEDALHKSNFENYSSRARDSLASWTADCIGFNLIEAVLCHICRKECPGAVLVFMTGWEDISCLRDQLKSHPLLGD 556 (913)
Q Consensus 477 ~i~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~ 556 (913)
...... .......... .............+..++..+ .....+++||||+++..++.++..|........
T Consensus 400 -----~~~~~~-~~~~~~~~~~---~~~~~~~~~~~~~l~~li~~l-~~~~~~~vIVF~~sr~~~e~la~~L~~~~~~~~ 469 (1108)
T 3l9o_A 400 -----GDDPNS-TDSRGKKGQT---YKGGSAKGDAKGDIYKIVKMI-WKKKYNPVIVFSFSKRDCEELALKMSKLDFNSD 469 (1108)
T ss_dssp ----------------------------------CHHHHHHHHHHH-HHTTCCCEEEEESCHHHHHHHHHHTCSHHHHCC
T ss_pred -----CCCCCC-CCCCCCCCCC---CCCCCCCCCCHHHHHHHHHHH-HHCCCCCEEEEECCHHHHHHHHHHHHHCCCCCH
T ss_conf -----133211-2343322223---445554432056899999999-962899889995848789999999986469977
Q ss_pred --------------------------------CCCEEEEEECCCCCHHHHHHHHCCCCCCCCEEEEECCHHHHCCCCCCE
Q ss_conf --------------------------------997189980389995889988400899962799961022204777986
Q 002521 557 --------------------------------PNRVLLLTCHGSMPTSEQKFIFEKAPPNIRKIVLATNMAEASITINDI 604 (913)
Q Consensus 557 --------------------------------~~~~~v~~lHs~l~~~er~~v~~~f~~g~~kVIvATniae~GIdIP~V 604 (913)
.....|..+||+|++.+|..+++.|++|.++|||||+++++|||||++
T Consensus 470 ~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vla~GIDiP~v 549 (1108)
T 3l9o_A 470 DEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAK 549 (1108)
T ss_dssp ----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEESCCCSCCCC--C
T ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCC
T ss_conf 78999999999887504644330056887877651575652589989999999999867998499987277657787874
Q ss_pred EEEEECCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHCCCCCCC---CCEEEEECCHHH
Q ss_conf 79993899862110489997767752047842997711049999---938999257525
Q 002521 605 VFVVDCGKAKETTYDALNNTPCLLPSWISQASARQRRGRAGRVQ---PGQCYHLYPRCV 660 (913)
Q Consensus 605 ~~VId~g~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRAGR~~---~G~c~~L~s~~~ 660 (913)
++||+++.+ ||.. ...|+|.++|.||+|||||.+ .|.||.+++...
T Consensus 550 ~~VI~~~~~----~d~~------~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~~ 598 (1108)
T 3l9o_A 550 TVVFTSVRK----WDGQ------QFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKM 598 (1108)
T ss_dssp EEEESCSEE----ESSS------CEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCCC
T ss_pred EEEEECCCC----CCCC------CCCCCCHHHHHHHHCCCCCCCCCCCEEEEEEECCCC
T ss_conf 599965766----6864------456389999997636347789998559999955886
No 7
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=1.00 E-value=1 Score=349.48 Aligned_cols=457 Identities=18% Similarity=0.148 Sum_probs=293.6
Q ss_pred HHHHHHHHHHH-HCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCC------CCCEEEEECCHHHHHHHHHHHHHHHHHCC
Q ss_conf 89999999999-919919999279703896999999999998189------98229997510498999999999988299
Q 002521 252 FKEKERLLQAI-ARNQVIVISGETGCGKTTQLPQYILESEIESGR------GAFCNIICTQPRRISAMAVSERVSAERGE 324 (913)
Q Consensus 252 ~~~q~~il~~i-~~~~~viI~a~TGSGKTt~~~~~ile~~~~~~~------g~~~~Ilvt~P~r~lA~qia~ri~~e~~~ 324 (913)
++.|.++++.+ ..+++++++||||||||+++.+++++.+..... ....+++++.|+|+||.|+++.+.+.++.
T Consensus 81 n~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~~~~~~ 160 (1724)
T 4f92_B 81 NRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFGKRLAT 160 (1724)
T ss_dssp CHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999758993999968814699999999999998623434444579988999899799999999999977754
Q ss_pred CCCCEEEEEEEC---CCCCCCCCEEEEEECHHHHHHHHCCC---CCCCCEEEEECCCC----CCCCCHHHHHHHHHHH-C
Q ss_conf 866276137721---45579983099980078899980599---99983199953644----4674147999999986-7
Q 002521 325 PLGETVGYKVRL---EGMKGKNTHLLFCTSGILLRRLLSDH---NLNGVTHVFVDEIH----ERGMNEDFLLIVLKDL-L 393 (913)
Q Consensus 325 ~~g~~vGy~vr~---e~~~~~~~~Iiv~T~g~Ll~~l~~~~---~L~~~~~IIIDEaH----er~~~~d~ll~~lk~l-l 393 (913)
+|..|+...+. .......++|+||||+.+...+.+.. .+.++++|||||+| +||...+.++..+... .
T Consensus 161 -~gi~V~~~tGd~~~~~~~~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d~RG~~lE~~l~rl~~~~~ 239 (1724)
T 4f92_B 161 -YGITVAELTGDHQLCKEEISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHDDRGPVLEALVARAIRNIE 239 (1724)
T ss_dssp -TTCCEEECCSSCSSCCTTGGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGSTTHHHHHHHHHHHHHHHH
T ss_pred -CCCEEEEEECCCCCCCCCCCCCCEEEECHHHHHHHHCCCCCCHHHCCCCEEEEECCHHCCCCCHHHHHHHHHHHHHHHH
T ss_conf -7988999979988871435899999988799999975885304454758899955544299567999999999999997
Q ss_pred CCCCCCEEEEECCCC-CHHHHHHHHCCCC-----EECCCCCCCCCEEEEHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 568665189804446-8888973619999-----5504894025135650447864104445666454114566777764
Q 002521 394 PRRRDLRLILMSATL-NAELFSNYFGGAP-----TIHIPGFTYPVQAHFLEDVLEMTGYKLTSLNQVDDYGQEKLWKTQR 467 (913)
Q Consensus 394 ~~~~~~kiIlmSATl-~~~~~~~yf~~~~-----vi~i~~~~~pv~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (913)
...+++|+|+||||+ |.+.+++|++..+ .+....|+.|++.++... ... . .
T Consensus 240 ~~~~~~riI~LSATl~N~~dvA~wL~~~~~~~~~~~~~~~RPvpL~~~~~~~-------~~~--~------~-------- 296 (1724)
T 4f92_B 240 MTQEDVRLIGLSATLPNYEDVATFLRVDPAKGLFYFDNSFRPVPLEQTYVGI-------TEK--K------A-------- 296 (1724)
T ss_dssp HHTCCCEEEEEECSCTTHHHHHHHTTCCHHHHEEECCGGGCSSCEEEECCEE-------CCC--C------H--------
T ss_pred HCCCCCCEEEEECCCCCHHHHHHHHCCCCCCCEEEECCCCCCCCCEEEEECC-------CCC--C------H--------
T ss_conf 3799980999954569999999986788888869979997667317999656-------875--4------1--------
Q ss_pred HHCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHH
Q ss_conf 21112345458999999972024455532444210012223233234999999886306999699982996799999999
Q 002521 468 QLLPRKRKNQITALVEDALHKSNFENYSSRARDSLASWTADCIGFNLIEAVLCHICRKECPGAVLVFMTGWEDISCLRDQ 547 (913)
Q Consensus 468 ~~~~~~~~~~i~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~ 547 (913)
... .....+. +...+.....++++||||++++.++.+++.
T Consensus 297 ----~~~----~~~~~~~--------------------------------~~~~v~~~~~~~~~LVF~~sR~~~~~~A~~ 336 (1724)
T 4f92_B 297 ----IKR----FQIMNEI--------------------------------VYEKIMEHAGKNQVLVFVHSRKETGKTARA 336 (1724)
T ss_dssp ----HHH----HHHHHHH--------------------------------HHHHHTTCCSSCCEEEECSSTTTTHHHHHH
T ss_pred ----HHH----HHHHHHH--------------------------------HHHHHHHHHCCCCEEEECCCHHHHHHHHHH
T ss_conf ----456----6778899--------------------------------999999975699689987888999999999
Q ss_pred HHCC----CC----CC----------------------CCCCEEEEEECCCCCHHHHHHHHCCCCCCCCEEEEECCHHHH
Q ss_conf 9749----99----89----------------------999718998038999588998840089996279996102220
Q 002521 548 LKSH----PL----LG----------------------DPNRVLLLTCHGSMPTSEQKFIFEKAPPNIRKIVLATNMAEA 597 (913)
Q Consensus 548 L~~~----~~----~~----------------------~~~~~~v~~lHs~l~~~er~~v~~~f~~g~~kVIvATniae~ 597 (913)
|... .. .. ......|+.|||+|+.++|..+++.|++|.++|||||++++.
T Consensus 337 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~~~~R~~vE~~F~~G~i~vlvaTsTLa~ 416 (1724)
T 4f92_B 337 IRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAW 416 (1724)
T ss_dssp HHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSCTHHHHHHHHHHHTTCCCEEEECHHHHH
T ss_pred HHHHHHHCCCHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCHHHH
T ss_conf 99987645521221333305788877664024448899986457788759999999999999987799749998426671
Q ss_pred CCCCCCEEEEEECCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHCCCCCC---CCCEEEEECCHHH---HHHHHHCCCC-
Q ss_conf 47779867999389986211048999776775204784299771104999---9938999257525---8852207997-
Q 002521 598 SITINDIVFVVDCGKAKETTYDALNNTPCLLPSWISQASARQRRGRAGRV---QPGQCYHLYPRCV---YEAFAEYQLP- 670 (913)
Q Consensus 598 GIdIP~V~~VId~g~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRAGR~---~~G~c~~L~s~~~---~~~l~~~~~p- 670 (913)
|||+|++++||. ....||+..+. ..++|.++|.||+|||||. ..|.++.+.+..+ |..+.....|
T Consensus 417 GVNlPa~~vVI~----~~~~~~~~~~~----~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~~~~~~~~~~~~ll~~~~pi 488 (1724)
T 4f92_B 417 GVNLPAHTVIIK----GTQVYSPEKGR----WTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPI 488 (1724)
T ss_dssp HSCCCBSEEEEE----CCEEEETTTTE----EEECCHHHHHHHHTTBSCTTTCSCEEEEEEEESTTCCHHHHHTTTCSCC
T ss_pred HCCCCCCEEEEE----CCEEECCCCCC----CCCCCHHHHHHHHHHCCCCCCCCCCEEEEEECCHHHHHHHHHHCCCCCC
T ss_conf 388887069982----88770476787----5638999998764012688888764799983502599999997499851
Q ss_pred C-CCCCCHHHHHHHHHHCC-CCCHH---HHHHH------CCCC-------------------CCHHHHHHHHHHHHHCCC
Q ss_conf 1-02467144779976347-89978---88873------0699-------------------925789999999998299
Q 002521 671 E-LLRTPLNSLCLQIKSLQ-VGSIG---EFLSA------ALQP-------------------PEPLAVQNAVDFLKRIGA 720 (913)
Q Consensus 671 E-i~r~~L~~~~L~lk~l~-~~~i~---~fl~~------~l~p-------------------P~~~~i~~al~~L~~lga 720 (913)
| -+...+.+.+.....++ +.+.. .|+.. .... ...+.+..++..|...|.
T Consensus 489 eS~l~~~l~d~L~aeI~~g~i~~~~~a~~~l~~T~~~~r~~~~p~~y~~~~~~~~~d~~l~~~~~~~i~~~~~~L~~~~l 568 (1724)
T 4f92_B 489 ESQMVSKLPDMLNAEIVLGNVQNAKDAVNWLGYAYLYIRMLRSPTLYGISHDDLKGDPLLDQRRLDLVHTAALMLDKNNL 568 (1724)
T ss_dssp CCCTTTTHHHHHHHHHHHTSCCBHHHHHHHHHHSHHHHHHHHCTTTTTCCHHHHHHCTTCHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 02033107889999998702478999999996437887753274654367100123637899999999999999988799
Q ss_pred CCCC-----CCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCH-HHHHHHHHHCC-CCCCCCCCHHHHH
Q ss_conf 8788-----87560111235467880789998974320594-89999974035-7898767712699
Q 002521 721 LDEK-----ENLTNLGKFLSMLPVDPKLGKMLVMGAIFRCF-DPVLTIVSGLS-VRDPFLLPQEKKN 780 (913)
Q Consensus 721 ld~~-----~~lT~lG~~l~~lpi~p~~~k~ll~~~~~~cl-~~~l~I~a~ls-~~~~f~~p~~~~~ 780 (913)
|..+ ...|++|++++.+++++...+.+.......+. ..++.+++..+ +.+..+...++.+
T Consensus 569 i~~d~~~~~~~~T~lGr~~s~~yi~~~t~~~~~~~l~~~~~~~~ll~~is~s~ef~~i~~R~~E~~~ 635 (1724)
T 4f92_B 569 VKYDKKTGNFQVTELGRIASHYYITNDTVQTYNQLLKPTLSEIELFRVFSLSSEFKNITVREEEKLE 635 (1724)
T ss_dssp EEECTTTCBEEECHHHHHHHHTTCCHHHHHHHHHHCCTTCCHHHHHHHHHTCGGGTTCCCCGGGHHH
T ss_pred EEEECCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHCCCCCCHHHHHH
T ss_conf 0140677864344487999983689999999986358889999999997577521667707789999
No 8
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=1.00 E-value=1 Score=340.35 Aligned_cols=384 Identities=15% Similarity=0.149 Sum_probs=241.3
Q ss_pred HCCCCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHH-CC
Q ss_conf 11899689999999999919919999279703896999999999998189982299975104989999999999882-99
Q 002521 246 RKSLPSFKEKERLLQAIARNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVSAER-GE 324 (913)
Q Consensus 246 r~~lP~~~~q~~il~~i~~~~~viI~a~TGSGKTt~~~~~ile~~~~~~~g~~~~Ilvt~P~r~lA~qia~ri~~e~-~~ 324 (913)
..+++..++|.+++..+..+++++++||||||||+++..++..... .+ .+++|++|+++|+.|+++++...+ +.
T Consensus 35 ~~~f~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~---~g--~~vlvl~PtraLa~Q~~~~l~~~~~~~ 109 (997)
T 4a4z_A 35 SWPFELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHR---NM--TKTIYTSPIKALSNQKFRDFKETFDDV 109 (997)
T ss_dssp CCSSCCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHH---TT--CEEEEEESCGGGHHHHHHHHHTTC--C
T ss_pred HCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHH---CC--CEEEEEECCHHHHHHHHHHHHHHCCCC
T ss_conf 2899999999999999984998999979998589999999999983---59--859999587999999999999976998
Q ss_pred CCCCEEEEEEECCCCCCCCCEEEEEECHHHHHHHHCCC-CCCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf 86627613772145579983099980078899980599-99983199953644467414799999998675686651898
Q 002521 325 PLGETVGYKVRLEGMKGKNTHLLFCTSGILLRRLLSDH-NLNGVTHVFVDEIHERGMNEDFLLIVLKDLLPRRRDLRLIL 403 (913)
Q Consensus 325 ~~g~~vGy~vr~e~~~~~~~~Iiv~T~g~Ll~~l~~~~-~L~~~~~IIIDEaHer~~~~d~ll~~lk~ll~~~~~~kiIl 403 (913)
.++...| +......++|+|+||++|++.+.... .+.++++|||||||.. .+.++...+...+...++++++|+
T Consensus 110 ~v~~l~G-----~~~~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l-~d~~~g~~~e~ii~~l~~~v~iIl 183 (997)
T 4a4z_A 110 NIGLITG-----DVQINPDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYV-NDQDRGVVWEEVIIMLPQHVKFIL 183 (997)
T ss_dssp CEEEECS-----SCEECTTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCC-CTTCTTCCHHHHHHHSCTTCEEEE
T ss_pred EEEEEEC-----CCCCCCCCCEEEECHHHHHHHHHHCCHHHCCCCEEEEECCCCC-CCCCHHHHHHHHHHHCCCCCCEEE
T ss_conf 3999968-----9866799998998899999999818112057889999895466-665448999999985466887899
Q ss_pred ECCCC-CHHHHHHHHC-----CCCEECCCCCCCCCEEEEHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCHHHHHHH
Q ss_conf 04446-8888973619-----99955048940251356504478641044456664541145667777642111234545
Q 002521 404 MSATL-NAELFSNYFG-----GAPTIHIPGFTYPVQAHFLEDVLEMTGYKLTSLNQVDDYGQEKLWKTQRQLLPRKRKNQ 477 (913)
Q Consensus 404 mSATl-~~~~~~~yf~-----~~~vi~i~~~~~pv~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (913)
||||+ +...|..|++ ...++..+.++.|+..++..... .... ... ...+ .+..+..............
T Consensus 184 LSAT~~n~~ef~~~l~~~~~~~~~vi~~~~r~~pl~~~v~~~~~-~~~~-~~~---~~~~-~~~~~~~~~~~l~~~~~~~ 257 (997)
T 4a4z_A 184 LSATVPNTYEFANWIGRTKQKNIYVISTPKRPVPLEINIWAKKE-LIPV-INQ---NSEF-LEANFRKHKEILNGESAKG 257 (997)
T ss_dssp EECCCTTHHHHHHHHHHHHTCCEEEEECSSCSSCEEEEEEETTE-EEEE-ECT---TCCB-CHHHHHHHHHHHC------
T ss_pred ECCCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCCEEEEECCCC-CHHC-CCC---HHHH-HHHHHHHHHHHHHCCCCCC
T ss_conf 76998976899999832358865998368887564688854875-0000-042---0356-6777999999863224334
Q ss_pred HHHHH---HHHH----------HHCC-------CCCCCH-----H----HHHHHCCCCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 89999---9997----------2024-------455532-----4----4421001222323323499999988630699
Q 002521 478 ITALV---EDAL----------HKSN-------FENYSS-----R----ARDSLASWTADCIGFNLIEAVLCHICRKECP 528 (913)
Q Consensus 478 i~~~v---~~~l----------~~~~-------~~~~~~-----~----~~~~l~~~~~~~~~~~li~~ll~~i~~~~~~ 528 (913)
..... .... .... ...... . .......+.........+..++. .+.....
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~-~l~~~~~ 336 (997)
T 4a4z_A 258 APSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVN-YLRKREL 336 (997)
T ss_dssp -----------------------------------------------------------CCCCTTHHHHHHH-HHHHTTC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH-HHHHCCC
T ss_conf 321000001222223444432123543334444455544444334443456654221224666668999999-9984799
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCCCC--------------------------------CCCEEEEEECCCCCHHHHHH
Q ss_conf 9699982996799999999974999899--------------------------------99718998038999588998
Q 002521 529 GAVLVFMTGWEDISCLRDQLKSHPLLGD--------------------------------PNRVLLLTCHGSMPTSEQKF 576 (913)
Q Consensus 529 g~iLVFl~~~~~i~~l~~~L~~~~~~~~--------------------------------~~~~~v~~lHs~l~~~er~~ 576 (913)
+++|||++++.+|+.++..|........ .....|..+||+|++.+|..
T Consensus 337 ~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R~~ 416 (997)
T 4a4z_A 337 LPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKEL 416 (997)
T ss_dssp CSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHHHH
T ss_pred CCEEEEECCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCHHHHCCHHHHHHHHHHHCCEEEECCCCCHHHHHH
T ss_conf 97899989888999999998457999778899999999999974465442112478788886368466249999999999
Q ss_pred HHCCCCCCCCEEEEECCHHHHCCCCCCEEEEEECCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHCCCCCCC---CCEEE
Q ss_conf 840089996279996102220477798679993899862110489997767752047842997711049999---93899
Q 002521 577 IFEKAPPNIRKIVLATNMAEASITINDIVFVVDCGKAKETTYDALNNTPCLLPSWISQASARQRRGRAGRVQ---PGQCY 653 (913)
Q Consensus 577 v~~~f~~g~~kVIvATniae~GIdIP~V~~VId~g~~k~~~yd~~~~~~~l~~~~iS~a~~~QR~GRAGR~~---~G~c~ 653 (913)
+++.|..|.++|||||+++++|||+|+ +.||..+.++ ||.. ...|+|..+|.||+|||||.+ .|.||
T Consensus 417 v~~~F~~G~~kVLvAT~~~a~GIDiP~-~~VVi~~~~k---~dg~------~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi 486 (997)
T 4a4z_A 417 IEILFSKGFIKVLFATETFAMGLNLPT-RTVIFSSIRK---HDGN------GLRELTPGEFTQMAGRAGRRGLDSTGTVI 486 (997)
T ss_dssp HHHHHHTTCCSEEEECTHHHHSCCCCC-SEEEESCSEE---EETT------EEEECCHHHHHHHHGGGCCTTTCSSEEEE
T ss_pred HHHHHHCCCCCEEEECHHHHCCCCCCC-CEEEEECCCC---CCCC------CCCCCCHHHHHHHHCCCCCCCCCCCEEEE
T ss_conf 999997799839997208667798888-6699940532---4676------67779999982774133568877635999
Q ss_pred EECC
Q ss_conf 9257
Q 002521 654 HLYP 657 (913)
Q Consensus 654 ~L~s 657 (913)
.++.
T Consensus 487 ~l~~ 490 (997)
T 4a4z_A 487 VMAY 490 (997)
T ss_dssp EECC
T ss_pred EECC
T ss_conf 9648
No 9
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=1.00 E-value=1 Score=333.59 Aligned_cols=342 Identities=13% Similarity=0.225 Sum_probs=241.0
Q ss_pred CCHHHHHHHHHCCCCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHH
Q ss_conf 91002278631189968999999999991991999927970389699999999999818998229997510498999999
Q 002521 236 SPEGNKMLDFRKSLPSFKEKERLLQAIARNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVS 315 (913)
Q Consensus 236 ~~~~~~l~~~r~~lP~~~~q~~il~~i~~~~~viI~a~TGSGKTt~~~~~ile~~~~~~~g~~~~Ilvt~P~r~lA~qia 315 (913)
++...+.+....-...+++|.+++..+..++++++.+|||||||+++.+++++.+.....+. ++++++|+++|+.|++
T Consensus 48 ~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~--~~lil~P~~~L~~q~~ 125 (414)
T 3eiq_A 48 SESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKAT--QALVLAPTRELAQQIQ 125 (414)
T ss_dssp CHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTTSCSC--CEEEECSSHHHHHHHH
T ss_pred CHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCCE--EEEEEECHHHHHHHHH
T ss_conf 99999999976999999899998679857997899878998505999999999986057861--6999937599999999
Q ss_pred HHHHHHHCCCCCCEEEEEEE-------CCCCCCCCCEEEEEECHHHHHHHHCCC-CCCCCEEEEECCCCCCCCCHHHHHH
Q ss_conf 99998829986627613772-------145579983099980078899980599-9998319995364446741479999
Q 002521 316 ERVSAERGEPLGETVGYKVR-------LEGMKGKNTHLLFCTSGILLRRLLSDH-NLNGVTHVFVDEIHERGMNEDFLLI 387 (913)
Q Consensus 316 ~ri~~e~~~~~g~~vGy~vr-------~e~~~~~~~~Iiv~T~g~Ll~~l~~~~-~L~~~~~IIIDEaHer~~~~d~ll~ 387 (913)
+.+...... .+..++.... .+......++|+|+||++|++.+.... .+..+++||+||||+. .+..+...
T Consensus 126 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vViDEah~~-~~~~~~~~ 203 (414)
T 3eiq_A 126 KVVMALGDY-MGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEM-LSRGFKDQ 203 (414)
T ss_dssp HHHHHHGGG-SCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCEEEECSHHHH-HHTTTHHH
T ss_pred HHHHHHHCC-CCCEEEEEECCCCHHHHHHHHHCCCCCEEEECHHHHHHHHHCCCCCCCCCCEEEEECHHHH-HCCCCHHH
T ss_conf 999998451-5833999978965578999973699999998989999999759956303829999898886-20373999
Q ss_pred HHHHHCCCCCCCEEEEECCCCCHHHH---HHHHCCCCEECCCCCCCCC---EEEEHHHHHHHHCCCCCCCCCCCCHHHHH
Q ss_conf 99986756866518980444688889---7361999955048940251---35650447864104445666454114566
Q 002521 388 VLKDLLPRRRDLRLILMSATLNAELF---SNYFGGAPTIHIPGFTYPV---QAHFLEDVLEMTGYKLTSLNQVDDYGQEK 461 (913)
Q Consensus 388 ~lk~ll~~~~~~kiIlmSATl~~~~~---~~yf~~~~vi~i~~~~~pv---~~~yl~~~~~~~~~~~~~~~~~~~~~~~~ 461 (913)
+...+....++.++++||||++.... ..++..+..+.+....... ...+.
T Consensus 204 ~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------ 259 (414)
T 3eiq_A 204 IYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYI------------------------ 259 (414)
T ss_dssp HHHHHTTSCTTCEEEEECSCCCHHHHHHHTTTCSSCEEECCCCCCCCTTSCCEEEE------------------------
T ss_pred HHHHHHHCCCCCEEEEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEEE------------------------
T ss_conf 99999838887769999983687899999987589789992477668898059999------------------------
Q ss_pred HHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCHHHH
Q ss_conf 77776421112345458999999972024455532444210012223233234999999886306999699982996799
Q 002521 462 LWKTQRQLLPRKRKNQITALVEDALHKSNFENYSSRARDSLASWTADCIGFNLIEAVLCHICRKECPGAVLVFMTGWEDI 541 (913)
Q Consensus 462 ~~~~~~~~~~~~~~~~i~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i 541 (913)
...........+..++.....+++||||++++++
T Consensus 260 ----------------------------------------------~~~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~ 293 (414)
T 3eiq_A 260 ----------------------------------------------NVEREEWKLDTLCDLYETLTITQAVIFINTRRKV 293 (414)
T ss_dssp ----------------------------------------------ECSSSTTHHHHHHHHHHSSCCSSCEEECSCHHHH
T ss_pred ----------------------------------------------EECHHHHHHHHHHHHHHHCCCCCEEEEECCHHHH
T ss_conf ----------------------------------------------9676875899999999847998289996878999
Q ss_pred HHHHHHHHCCCCCCCCCCEEEEEECCCCCHHHHHHHHCCCCCCCCEEEEECCHHHHCCCCCCEEEEEECCCCCCEEECCC
Q ss_conf 99999997499989999718998038999588998840089996279996102220477798679993899862110489
Q 002521 542 SCLRDQLKSHPLLGDPNRVLLLTCHGSMPTSEQKFIFEKAPPNIRKIVLATNMAEASITINDIVFVVDCGKAKETTYDAL 621 (913)
Q Consensus 542 ~~l~~~L~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~~f~~g~~kVIvATniae~GIdIP~V~~VId~g~~k~~~yd~~ 621 (913)
+.+++.|... ++.+..+||+++..+|..+++.|++|..+|||||+++++|+|+|++++||+++.+.
T Consensus 294 ~~l~~~l~~~-------~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~~Vi~~~~p~------- 359 (414)
T 3eiq_A 294 DWLTEKMHAR-------DFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPT------- 359 (414)
T ss_dssp HHHHHHHHTT-------TCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC--CCGGGCSCEEESSCCS-------
T ss_pred HHHHHHHHHC-------CCEEEEECCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCEEEEECCCC-------
T ss_conf 9999999866-------97089734779999999999999759993999888312697856788899967999-------
Q ss_pred CCCCCCCCCCCCHHHHHHHHCCCCCC-CCCEEEEECCHHHHHH---HHHCCCCCCCCCC
Q ss_conf 99776775204784299771104999-9938999257525885---2207997102467
Q 002521 622 NNTPCLLPSWISQASARQRRGRAGRV-QPGQCYHLYPRCVYEA---FAEYQLPELLRTP 676 (913)
Q Consensus 622 ~~~~~l~~~~iS~a~~~QR~GRAGR~-~~G~c~~L~s~~~~~~---l~~~~~pEi~r~~ 676 (913)
|..+|.||+|||||. ++|.||.++++.+... +..+-..++...+
T Consensus 360 -----------s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (414)
T 3eiq_A 360 -----------NRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTSIEEMP 407 (414)
T ss_dssp -----------STHHHHHHSCCC-------CEEEEECSTHHHHHHHHHHHTTCCCEECC
T ss_pred -----------CHHHHHHHCCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCC
T ss_conf -----------888823415725689897669999727789999999999757743169
No 10
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=1.00 E-value=1 Score=332.44 Aligned_cols=303 Identities=18% Similarity=0.189 Sum_probs=226.8
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHH
Q ss_conf 78631189968999999999991991999927970389699999999999818998229997510498999999999988
Q 002521 242 MLDFRKSLPSFKEKERLLQAIARNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVSERVSAE 321 (913)
Q Consensus 242 l~~~r~~lP~~~~q~~il~~i~~~~~viI~a~TGSGKTt~~~~~ile~~~~~~~g~~~~Ilvt~P~r~lA~qia~ri~~e 321 (913)
.++.+..+|++.+|++++..+.++++++++||||||||+++++++++ ++. +++|++|+|++|.|+++++++.
T Consensus 209 ~l~~r~~lP~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~------~g~--~vLVl~PTReLA~Qia~~l~~~ 280 (666)
T 3o8b_A 209 SMETTMRSPVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAA------QGY--KVLVLNPSVAATLGFGAYMSKA 280 (666)
T ss_dssp HHHHHHHSCSCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHH------TTC--CEEEEESCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHH------CCC--EEEEECCHHHHHHHHHHHHHHH
T ss_conf 65430259759999999999976984999918951499999999997------899--6999965499999999999998
Q ss_pred HCCCCCCEEEEEEECCCCCCCCCEEEEEECHHHHHHHHCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCEE
Q ss_conf 29986627613772145579983099980078899980599999831999536444674147999999986756866518
Q 002521 322 RGEPLGETVGYKVRLEGMKGKNTHLLFCTSGILLRRLLSDHNLNGVTHVFVDEIHERGMNEDFLLIVLKDLLPRRRDLRL 401 (913)
Q Consensus 322 ~~~~~g~~vGy~vr~e~~~~~~~~Iiv~T~g~Ll~~l~~~~~L~~~~~IIIDEaHer~~~~d~ll~~lk~ll~~~~~~ki 401 (913)
++..++..+|+.. ...+.+|+|+|||+|+. .....+.++++|||||+|+++...+..+..+...++......+
T Consensus 281 ~g~~vg~~vG~~~-----~~~~~~IlV~TPGrLl~--~~~l~l~~l~~lVlDEAH~l~~~~~~~l~~Il~~l~~~~~~ll 353 (666)
T 3o8b_A 281 HGIDPNIRTGVRT-----ITTGAPVTYSTYGKFLA--DGGCSGGAYDIIICDECHSTDSTTILGIGTVLDQAETAGARLV 353 (666)
T ss_dssp HSCCCEEECSSCE-----ECCCCSEEEEEHHHHHH--TTSCCTTSCSEEEETTTTCCSHHHHHHHHHHHHHTTTTTCSEE
T ss_pred HCCCEEEEECCEE-----CCCCCCEEEECCHHHHH--CCCCCCCCCCEEEECCCHHCCCCHHHHHHHHHHHHHHCCCCEE
T ss_conf 5997258988576-----15898999989078874--8874547515899826232484679999999986241277269
Q ss_pred EEECCCCCHHHHHHHHCCCCEECCCC-CCCCCEEEEHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHH
Q ss_conf 98044468888973619999550489-40251356504478641044456664541145667777642111234545899
Q 002521 402 ILMSATLNAELFSNYFGGAPTIHIPG-FTYPVQAHFLEDVLEMTGYKLTSLNQVDDYGQEKLWKTQRQLLPRKRKNQITA 480 (913)
Q Consensus 402 IlmSATl~~~~~~~yf~~~~vi~i~~-~~~pv~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 480 (913)
++||||++.. + ..+. ...++...+... ..
T Consensus 354 il~SAT~~~~-----i------~~~~p~i~~v~~~~~~~--------------i~------------------------- 383 (666)
T 3o8b_A 354 VLATATPPGS-----V------TVPHPNIEEVALSNTGE--------------IP------------------------- 383 (666)
T ss_dssp EEEESSCTTC-----C------CCCCTTEEEEECBSCSS--------------EE-------------------------
T ss_pred EEECCCCCCC-----C------CCCCCCEEEEEECCCCH--------------HH-------------------------
T ss_conf 9987889844-----4------56776147775023204--------------67-------------------------
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHCCCCCCCCCCE
Q ss_conf 99999720244555324442100122232332349999998863069996999829967999999999749998999971
Q 002521 481 LVEDALHKSNFENYSSRARDSLASWTADCIGFNLIEAVLCHICRKECPGAVLVFMTGWEDISCLRDQLKSHPLLGDPNRV 560 (913)
Q Consensus 481 ~v~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~ 560 (913)
....... .....++++||||+++++++.+++.|... ++
T Consensus 384 ------------------------~~~~~~~-----------l~~~~~~~vLVFv~Tr~~ae~la~~L~~~-------g~ 421 (666)
T 3o8b_A 384 ------------------------FYGKAIP-----------IEAIRGGRHLIFCHSKKKCDELAAKLSGL-------GI 421 (666)
T ss_dssp ------------------------ETTEEEC-----------GGGSSSSEEEEECSCHHHHHHHHHHHHTT-------TC
T ss_pred ------------------------HHHHHHH-----------HHHCCCCCEEEEECCHHHHHHHHHHHHHC-------CC
T ss_conf ------------------------8876434-----------55406995899968889999999999867-------99
Q ss_pred EEEEECCCCCHHHHHHHHCCCCCCCCEEEEECCHHHHCCCCCCEEEEEECCCCCCEE----ECCCCCCCCCCCCCCCHHH
Q ss_conf 899803899958899884008999627999610222047779867999389986211----0489997767752047842
Q 002521 561 LLLTCHGSMPTSEQKFIFEKAPPNIRKIVLATNMAEASITINDIVFVVDCGKAKETT----YDALNNTPCLLPSWISQAS 636 (913)
Q Consensus 561 ~v~~lHs~l~~~er~~v~~~f~~g~~kVIvATniae~GIdIP~V~~VId~g~~k~~~----yd~~~~~~~l~~~~iS~a~ 636 (913)
.+..+||+|++++ |+++..+||||||++++||||| |++|||+|+.+... ||+..++.. ...|+|.++
T Consensus 422 ~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl~~-~~~P~s~~s 492 (666)
T 3o8b_A 422 NAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIET-TTVPQDAVS 492 (666)
T ss_dssp CEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEEEE-EEEECBHHH
T ss_pred CEEEECCCCCHHH-------HHHCCCCEEEECCHHHCCCCCC-CCEEEECCCCCCCCCCCCCCCCCCCCC-CCCCCCHHH
T ss_conf 3898608788999-------9728984999897477267789-758996676432211235553223223-557699999
Q ss_pred HHHHHCCCCCCCCCEEEEECCHHHH
Q ss_conf 9977110499999389992575258
Q 002521 637 ARQRRGRAGRVQPGQCYHLYPRCVY 661 (913)
Q Consensus 637 ~~QR~GRAGR~~~G~c~~L~s~~~~ 661 (913)
|.||+||+||.++|. |.||+..+.
T Consensus 493 yiQRiGRtGRg~~G~-i~lvt~~e~ 516 (666)
T 3o8b_A 493 RSQRRGRTGRGRRGI-YRFVTPGER 516 (666)
T ss_dssp HHHHHTTBCSSSCEE-EEESCCCCB
T ss_pred HHHHHCCCCCCCCCE-EEEEECCHH
T ss_conf 999863578899988-999823131
Done!