BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002522
(913 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2RIR|A Chain A, Crystal Structure Of Dipicolinate Synthase, A Chain, From
Bacillus Subtilis
pdb|2RIR|B Chain B, Crystal Structure Of Dipicolinate Synthase, A Chain, From
Bacillus Subtilis
pdb|2RIR|C Chain C, Crystal Structure Of Dipicolinate Synthase, A Chain, From
Bacillus Subtilis
pdb|2RIR|D Chain D, Crystal Structure Of Dipicolinate Synthase, A Chain, From
Bacillus Subtilis
pdb|2RIR|E Chain E, Crystal Structure Of Dipicolinate Synthase, A Chain, From
Bacillus Subtilis
pdb|2RIR|F Chain F, Crystal Structure Of Dipicolinate Synthase, A Chain, From
Bacillus Subtilis
pdb|2RIR|G Chain G, Crystal Structure Of Dipicolinate Synthase, A Chain, From
Bacillus Subtilis
pdb|2RIR|H Chain H, Crystal Structure Of Dipicolinate Synthase, A Chain, From
Bacillus Subtilis
Length = 300
Score = 36.2 bits (82), Expect = 0.088, Method: Composition-based stats.
Identities = 29/115 (25%), Positives = 51/115 (44%), Gaps = 17/115 (14%)
Query: 715 LEMLKAKIKEEALRTYLFTFTS-----------SYDSLSLDQLTKM-FDLSEVQTHSIVS 762
LE+++ K+ E+ YL F + D + Q+ + +S +VS
Sbjct: 20 LEIIR-KLTEQQADIYLVGFDQLDHGFTGAVKCNIDEIPFQQIDSIILPVSATTGEGVVS 78
Query: 763 KMMINEELHASWDQ----PTHCIIFHDVEHSRLQALAFQLTEKLSILAESNERAM 813
+ NEE+ D P HC+IF + ++ L+ +A Q KL L E ++ A+
Sbjct: 79 TVFSNEEVVLKQDHLDRTPAHCVIFSGISNAYLENIAAQAKRKLVKLFERDDIAI 133
>pdb|1UA4|A Chain A, Crystal Structure Of An Adp-Dependent Glucokinase From
Pyrococcus Furiosus
Length = 455
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 47/82 (57%), Gaps = 4/82 (4%)
Query: 666 RQTFTGPPENVRDHVMAATRALTKGDFQKAFDVINS-LDVWRLLRNRESVLEMLKAKIKE 724
R++F+ +NV+ +++ +ALTK ++++ F+++ S L+V L RE + + A +
Sbjct: 216 RESFSEVIKNVQLAILSGLQALTKENYKEPFEIVKSNLEV---LNEREIPVHLEFAFTPD 272
Query: 725 EALRTYLFTFTSSYDSLSLDQL 746
E +R + + S+ L+++
Sbjct: 273 EKVREEILNVLGMFYSVGLNEV 294
>pdb|2X5F|A Chain A, Crystal Structure Of The Methicillin-Resistant
Staphylococcus Aureus Sar2028, An
Aspartate_tyrosine_phenylalanine Pyridoxal-5'-Phosphate
Dependent Aminotransferase
pdb|2X5F|B Chain B, Crystal Structure Of The Methicillin-Resistant
Staphylococcus Aureus Sar2028, An
Aspartate_tyrosine_phenylalanine Pyridoxal-5'-Phosphate
Dependent Aminotransferase
Length = 430
Score = 30.8 bits (68), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 32/150 (21%), Positives = 60/150 (40%), Gaps = 8/150 (5%)
Query: 479 PRKPTFPENSRTMMDMLVSLIYKYGDERTKARAMLCDIYHHALLDEFSTARDLLLMSHLQ 538
P PT + + +V I ++ TK A++ D Y+ ++ T +++L
Sbjct: 198 PNNPTGYTPTHKEVTTIVEAIKALANKGTKVIAVVDDAYYGLFYEDVYTQSLFTALTNLH 257
Query: 539 DNVQQMDVLSQILFNRAMAQLGLCAFRVGLVAEGHS--CLSELYSGGKVKELLAQGISQS 596
N + I + A + FRVG + G S E+ KVK L+ IS
Sbjct: 258 SN-----AILPIRLDGATKEFFAWGFRVGFMTFGTSDQTTKEVLE-AKVKGLIRSNISSG 311
Query: 597 RYHEKTPEQERLERRRQMPYHMHINLELLE 626
++ + L+ +Q + N++ L+
Sbjct: 312 PLPTQSAVKHVLKNNKQFDKEIEQNIQTLK 341
>pdb|1KZH|A Chain A, Structure Of A Pyrophosphate-dependent Phosphofructokinase
From The Lyme Disease Spirochete Borrelia Burgdorferi
pdb|1KZH|B Chain B, Structure Of A Pyrophosphate-dependent Phosphofructokinase
From The Lyme Disease Spirochete Borrelia Burgdorferi
pdb|2F48|A Chain A, Crystal Structure Of A Novel Fructose 1,6-Bisphosphate And
Alf3 Containing Pyrophosphate-Dependent
Phosphofructo-1-Kinase Complex From Borrelia Burgdorferi
pdb|2F48|B Chain B, Crystal Structure Of A Novel Fructose 1,6-Bisphosphate And
Alf3 Containing Pyrophosphate-Dependent
Phosphofructo-1-Kinase Complex From Borrelia Burgdorferi
Length = 555
Score = 30.0 bits (66), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 35/170 (20%), Positives = 69/170 (40%), Gaps = 19/170 (11%)
Query: 374 IDVEFFKSLQSIDPHTREYVERLRDEPMFLVLAQDVQEYLEQAGEFKAASKVALRRVELI 433
I E KS+ DPH V R+ E +F+ + Q +++ GE+K +
Sbjct: 370 IQFELIKSILERDPHGNFNVSRVPTEKLFIEMIQSRLNDMKKRGEYKGS----------- 418
Query: 434 YYKPQEVYDAMRKLAEQTDEGDN------GEKAIEEESRGPSAFISVPELVPRKPTFPEN 487
+ P + + + D+ G A+ G + ++S + + KPT
Sbjct: 419 -FTPVDHFFGYEGRSAFPSNFDSDYCYSLGYNAVVLILNGLTGYMSCIKNLNLKPTDWIA 477
Query: 488 SRTMMDMLVSLIYKYGDERTKARAMLCDIYHHALLDEFSTARDLLLMSHL 537
+ ML+++ +YG+++ + L D+ EF RD +++L
Sbjct: 478 GGVPLTMLMNMEERYGEKKPVIKKALVDLEGRP-FKEFVKNRDKWALNNL 526
>pdb|3CXN|A Chain A, Structure Of The Urease Accessory Protein Uref From
Helicobacter Pylori
pdb|3CXN|B Chain B, Structure Of The Urease Accessory Protein Uref From
Helicobacter Pylori
pdb|3CXN|C Chain C, Structure Of The Urease Accessory Protein Uref From
Helicobacter Pylori
Length = 274
Score = 30.0 bits (66), Expect = 5.9, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 24/46 (52%)
Query: 710 NRESVLEMLKAKIKEEALRTYLFTFTSSYDSLSLDQLTKMFDLSEV 755
N+ES LE LKA + + L T + +Y+S L K+ + EV
Sbjct: 85 NKESALEYLKANLSSQFLYTEXLSLKLTYESALQQDLKKILGVEEV 130
>pdb|2WGL|A Chain A, Crystal Structure Of Helicobactor Pylori Uref
pdb|2WGL|B Chain B, Crystal Structure Of Helicobactor Pylori Uref
pdb|2WGL|C Chain C, Crystal Structure Of Helicobactor Pylori Uref
Length = 254
Score = 30.0 bits (66), Expect = 6.7, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 24/46 (52%)
Query: 710 NRESVLEMLKAKIKEEALRTYLFTFTSSYDSLSLDQLTKMFDLSEV 755
N+ES LE LKA + + L T + +Y+S L K+ + EV
Sbjct: 65 NKESALEYLKANLSSQFLYTEXLSLKLTYESALQQDLKKILGVEEV 110
>pdb|3HHD|A Chain A, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design.
pdb|3HHD|B Chain B, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design.
pdb|3HHD|C Chain C, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design.
pdb|3HHD|D Chain D, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design
Length = 965
Score = 29.6 bits (65), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 4/81 (4%)
Query: 714 VLEMLKAKIKEEALRTYLFTFTSSYDSLSLDQLTKMFDLSEVQTHSIVSKMMINEELHAS 773
+L+ LK I+E R+ + TS ++ L + +E +++VS ++ E L
Sbjct: 696 LLQELKKVIREPKPRSARWLSTSIPEAQWHSSLARTSS-AEYNVNNLVSPVLFQEAL--- 751
Query: 774 WDQPTHCIIFHDVEHSRLQAL 794
W P H ++ H+ LQA+
Sbjct: 752 WHVPEHAVVLEIAPHALLQAV 772
>pdb|2JFK|A Chain A, Structure Of The Mat Domain Of Human Fas With Malonyl-Coa
pdb|2JFK|B Chain B, Structure Of The Mat Domain Of Human Fas With Malonyl-Coa
pdb|2JFK|C Chain C, Structure Of The Mat Domain Of Human Fas With Malonyl-Coa
pdb|2JFK|D Chain D, Structure Of The Mat Domain Of Human Fas With Malonyl-Coa
Length = 433
Score = 29.6 bits (65), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 4/81 (4%)
Query: 714 VLEMLKAKIKEEALRTYLFTFTSSYDSLSLDQLTKMFDLSEVQTHSIVSKMMINEELHAS 773
+L+ LK I+E R+ + TS ++ L + +E +++VS ++ E L
Sbjct: 296 LLQELKKVIREPKPRSARWLSTSIPEAQWHSSLARTSS-AEYNVNNLVSPVLFQEAL--- 351
Query: 774 WDQPTHCIIFHDVEHSRLQAL 794
W P H ++ H+ LQA+
Sbjct: 352 WHVPEHAVVLEIAPHALLQAV 372
>pdb|2JFD|A Chain A, Structure Of The Mat Domain Of Human Fas
pdb|2JFD|B Chain B, Structure Of The Mat Domain Of Human Fas
pdb|2JFD|C Chain C, Structure Of The Mat Domain Of Human Fas
pdb|2JFD|D Chain D, Structure Of The Mat Domain Of Human Fas
Length = 425
Score = 29.6 bits (65), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 4/81 (4%)
Query: 714 VLEMLKAKIKEEALRTYLFTFTSSYDSLSLDQLTKMFDLSEVQTHSIVSKMMINEELHAS 773
+L+ LK I+E R+ + TS ++ L + +E +++VS ++ E L
Sbjct: 296 LLQELKKVIREPKPRSARWLSTSIPEAQWHSSLARTSS-AEYNVNNLVSPVLFQEAL--- 351
Query: 774 WDQPTHCIIFHDVEHSRLQAL 794
W P H ++ H+ LQA+
Sbjct: 352 WHVPEHAVVLEIAPHALLQAV 372
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.132 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,771,373
Number of Sequences: 62578
Number of extensions: 795561
Number of successful extensions: 2261
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 2254
Number of HSP's gapped (non-prelim): 23
length of query: 913
length of database: 14,973,337
effective HSP length: 108
effective length of query: 805
effective length of database: 8,214,913
effective search space: 6613004965
effective search space used: 6613004965
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)