Query 002522
Match_columns 913
No_of_seqs 195 out of 252
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 01:41:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002522.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002522hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1076 Translation initiation 100.0 5E-257 1E-261 2140.6 63.7 786 2-822 1-800 (843)
2 PF05470 eIF-3c_N: Eukaryotic 100.0 5E-185 1E-189 1596.4 56.3 590 39-648 1-595 (595)
3 PF01399 PCI: PCI domain; Int 99.0 6E-10 1.3E-14 101.7 8.4 103 679-785 2-105 (105)
4 smart00753 PAM PCI/PINT associ 98.6 4.2E-08 9E-13 88.3 5.4 84 719-803 3-86 (88)
5 smart00088 PINT motif in prote 98.6 4.2E-08 9E-13 88.3 5.4 84 719-803 3-86 (88)
6 KOG3973 Uncharacterized conser 98.2 1.9E-06 4.1E-11 94.6 7.2 9 489-497 142-150 (465)
7 KOG0921 Dosage compensation co 98.2 2.3E-06 5E-11 102.9 7.6 16 801-816 1118-1133(1282)
8 KOG0921 Dosage compensation co 98.1 6.1E-06 1.3E-10 99.5 8.6 45 239-283 368-420 (1282)
9 KOG1497 COP9 signalosome, subu 96.3 0.0024 5.1E-08 70.8 2.9 61 729-789 306-366 (399)
10 KOG2908 26S proteasome regulat 95.6 0.044 9.6E-07 61.6 8.9 125 675-803 232-358 (380)
11 PRK11634 ATP-dependent RNA hel 95.3 0.029 6.3E-07 68.3 6.6 20 847-866 576-595 (629)
12 KOG2758 Translation initiation 95.2 0.015 3.3E-07 64.7 3.7 129 649-794 268-403 (432)
13 PF05918 API5: Apoptosis inhib 93.7 0.018 3.9E-07 68.8 0.0 61 619-687 327-401 (556)
14 PF05918 API5: Apoptosis inhib 93.7 0.019 4.1E-07 68.6 0.0 50 273-333 20-69 (556)
15 COG5071 RPN5 26S proteasome re 93.5 0.16 3.4E-06 56.5 6.6 92 715-812 332-423 (439)
16 KOG4661 Hsp27-ERE-TATA-binding 92.7 0.23 5.1E-06 58.6 6.7 16 842-857 865-880 (940)
17 KOG1498 26S proteasome regulat 92.4 0.37 8E-06 55.3 7.7 93 710-808 327-419 (439)
18 PRK11634 ATP-dependent RNA hel 92.3 0.18 3.8E-06 61.7 5.5 6 588-593 304-309 (629)
19 KOG2044 5'-3' exonuclease HKE1 91.8 0.45 9.8E-06 58.4 7.9 32 138-174 110-141 (931)
20 PF07172 GRP: Glycine rich pro 91.1 1.8 3.9E-05 40.8 9.5 6 794-799 9-14 (95)
21 KOG0116 RasGAP SH3 binding pro 89.7 0.41 8.9E-06 55.8 4.9 6 779-784 333-338 (419)
22 KOG2044 5'-3' exonuclease HKE1 89.5 0.61 1.3E-05 57.3 6.2 12 92-103 82-93 (931)
23 PHA00370 III attachment protei 89.1 0.8 1.7E-05 49.8 6.1 33 754-786 19-53 (297)
24 COG5600 Transcription-associat 88.9 8.9 0.00019 44.3 14.5 230 489-788 150-406 (413)
25 KOG1076 Translation initiation 88.9 0.2 4.2E-06 60.7 1.6 116 53-175 97-215 (843)
26 COG4907 Predicted membrane pro 88.1 0.34 7.3E-06 56.3 2.8 7 688-694 473-479 (595)
27 PF10255 Paf67: RNA polymerase 87.1 9.7 0.00021 44.6 13.7 195 511-761 124-342 (404)
28 KOG0116 RasGAP SH3 binding pro 86.8 0.84 1.8E-05 53.3 5.1 7 731-737 331-337 (419)
29 COG4907 Predicted membrane pro 85.1 0.57 1.2E-05 54.5 2.5 15 613-627 419-433 (595)
30 KOG2581 26S proteasome regulat 85.1 46 0.001 39.2 17.4 207 514-783 213-421 (493)
31 PF10075 PCI_Csn8: COP9 signal 82.7 1.1 2.4E-05 44.3 3.2 79 678-764 42-121 (143)
32 PRK10590 ATP-dependent RNA hel 81.3 3.3 7.1E-05 48.6 6.9 10 672-681 322-331 (456)
33 PF13324 GCIP: Grap2 and cycli 80.3 88 0.0019 34.5 17.2 49 252-303 199-249 (275)
34 KOG3262 H/ACA small nucleolar 79.4 2.8 6.1E-05 43.8 4.8 6 900-905 49-54 (215)
35 COG1512 Beta-propeller domains 74.1 3.2 6.9E-05 46.1 3.8 62 627-690 12-93 (271)
36 PF04931 DNA_pol_phi: DNA poly 72.1 26 0.00057 44.3 11.6 12 253-264 737-748 (784)
37 COG1512 Beta-propeller domains 72.0 3.8 8.1E-05 45.5 3.7 10 563-572 140-149 (271)
38 PLN03138 Protein TOC75; Provis 71.6 2.7 5.9E-05 52.7 2.8 9 901-909 133-141 (796)
39 PF03276 Gag_spuma: Spumavirus 69.4 9.9 0.00021 45.6 6.5 111 613-746 313-431 (582)
40 KOG1832 HIV-1 Vpr-binding prot 68.6 3.3 7.2E-05 51.8 2.5 30 121-150 1321-1356(1516)
41 KOG2582 COP9 signalosome, subu 68.5 34 0.00074 39.7 10.2 169 548-785 183-360 (422)
42 PF04931 DNA_pol_phi: DNA poly 67.8 44 0.00095 42.4 12.2 42 87-133 529-570 (784)
43 KOG4307 RNA binding protein RB 65.3 24 0.00052 43.6 8.6 23 54-80 68-90 (944)
44 KOG3262 H/ACA small nucleolar 64.7 14 0.0003 39.0 5.7 7 670-676 47-53 (215)
45 KOG4661 Hsp27-ERE-TATA-binding 61.9 27 0.00058 42.2 8.0 8 827-834 830-837 (940)
46 KOG0526 Nucleosome-binding fac 60.4 7 0.00015 46.7 3.1 10 162-171 436-445 (615)
47 PF03399 SAC3_GANP: SAC3/GANP/ 59.8 11 0.00024 38.9 4.2 67 679-751 137-203 (204)
48 KOG0339 ATP-dependent RNA heli 59.7 7.5 0.00016 46.5 3.1 67 647-727 401-467 (731)
49 PF13174 TPR_6: Tetratricopept 59.7 12 0.00027 26.6 3.3 27 555-581 2-28 (33)
50 PF12782 Innate_immun: Inverte 59.2 56 0.0012 35.1 9.1 15 798-812 15-29 (311)
51 KOG1463 26S proteasome regulat 58.5 6.8 0.00015 44.8 2.5 50 736-785 341-390 (411)
52 PF04094 DUF390: Protein of un 57.4 21 0.00046 44.2 6.4 17 750-766 9-25 (828)
53 COG5159 RPN6 26S proteasome re 53.6 15 0.00032 41.5 4.0 113 654-807 298-411 (421)
54 PF10961 DUF2763: Protein of u 53.6 31 0.00066 32.5 5.5 10 796-805 26-35 (91)
55 KOG0687 26S proteasome regulat 53.6 11 0.00023 43.1 3.0 55 736-790 313-367 (393)
56 PF07719 TPR_2: Tetratricopept 53.4 22 0.00047 25.6 3.7 27 555-581 3-29 (34)
57 PF10961 DUF2763: Protein of u 53.4 29 0.00062 32.7 5.3 6 788-793 15-20 (91)
58 PF09012 FeoC: FeoC like trans 51.9 5.2 0.00011 34.9 0.2 40 737-776 11-50 (69)
59 PRK04537 ATP-dependent RNA hel 51.7 26 0.00056 42.7 6.1 26 671-696 333-358 (572)
60 KOG0686 COP9 signalosome, subu 51.7 37 0.0008 39.9 6.9 122 654-792 295-419 (466)
61 TIGR01648 hnRNP-R-Q heterogene 51.6 22 0.00048 43.6 5.5 16 736-751 240-255 (578)
62 PF14938 SNAP: Soluble NSF att 50.7 3.7E+02 0.0081 29.4 14.8 74 505-581 151-224 (282)
63 PF09756 DDRGK: DDRGK domain; 50.5 12 0.00026 39.6 2.6 50 739-788 112-161 (188)
64 PRK11788 tetratricopeptide rep 49.7 3.2E+02 0.0069 30.4 14.0 153 520-701 80-239 (389)
65 cd00189 TPR Tetratricopeptide 47.1 1.5E+02 0.0032 23.8 8.3 61 509-581 36-96 (100)
66 PF04147 Nop14: Nop14-like fam 46.3 75 0.0016 40.8 9.2 12 88-99 214-225 (840)
67 PF02650 HTH_WhiA: WhiA C-term 45.0 72 0.0016 29.7 6.5 69 675-765 11-81 (85)
68 PF04285 DUF444: Protein of un 44.9 36 0.00078 40.2 5.6 30 788-818 19-49 (421)
69 TIGR01659 sex-lethal sex-letha 44.4 34 0.00073 39.3 5.3 24 613-638 114-137 (346)
70 PF05268 GP38: Phage tail fibr 41.6 49 0.0011 35.9 5.4 20 715-734 60-79 (260)
71 TIGR02917 PEP_TPR_lipo putativ 41.5 4.2E+02 0.0091 32.2 14.2 160 508-702 21-185 (899)
72 PF10446 DUF2457: Protein of u 40.9 19 0.00042 42.3 2.6 10 154-163 38-47 (458)
73 PTZ00473 Plasmodium Vir superf 40.9 79 0.0017 37.1 7.3 13 898-910 394-406 (420)
74 PF14853 Fis1_TPR_C: Fis1 C-te 40.3 46 0.001 28.2 4.1 51 677-727 1-53 (53)
75 PRK04778 septation ring format 40.1 1.6E+02 0.0034 36.1 10.2 93 63-160 171-271 (569)
76 PF08784 RPA_C: Replication pr 39.3 18 0.00039 33.8 1.7 37 740-776 65-101 (102)
77 KOG3910 Helix loop helix trans 37.8 69 0.0015 38.4 6.3 57 73-129 529-585 (632)
78 KOG4211 Splicing factor hnRNP- 37.5 65 0.0014 38.6 6.1 22 358-379 103-124 (510)
79 PF04545 Sigma70_r4: Sigma-70, 37.5 23 0.00049 28.7 1.8 28 738-765 18-45 (50)
80 TIGR02552 LcrH_SycD type III s 37.2 3.5E+02 0.0076 25.3 11.6 29 672-700 81-109 (135)
81 PF10446 DUF2457: Protein of u 37.1 40 0.00087 39.9 4.3 8 654-661 404-411 (458)
82 PF13412 HTH_24: Winged helix- 37.0 23 0.00049 28.4 1.8 29 740-768 17-45 (48)
83 KOG4211 Splicing factor hnRNP- 36.2 78 0.0017 37.9 6.5 12 318-329 20-31 (510)
84 KOG3293 Small nuclear ribonucl 34.6 53 0.0012 32.5 4.0 7 798-804 75-81 (134)
85 KOG4307 RNA binding protein RB 34.5 1.4E+02 0.003 37.4 8.3 15 798-812 709-723 (944)
86 cd00189 TPR Tetratricopeptide 33.8 1.3E+02 0.0028 24.2 5.9 51 521-581 12-62 (100)
87 TIGR02521 type_IV_pilW type IV 33.5 4.7E+02 0.01 25.6 14.1 61 509-581 67-127 (234)
88 PF02724 CDC45: CDC45-like pro 33.1 39 0.00085 41.8 3.7 20 619-639 396-415 (622)
89 TIGR01659 sex-lethal sex-letha 33.1 63 0.0014 37.1 5.1 9 742-750 206-214 (346)
90 PRK09637 RNA polymerase sigma 33.0 1.4E+02 0.003 30.6 7.1 103 651-766 30-148 (181)
91 TIGR02983 SigE-fam_strep RNA p 32.7 1.2E+02 0.0025 30.0 6.4 39 737-777 123-161 (162)
92 PF12870 Lumazine_bd: Lumazine 32.7 33 0.00072 31.1 2.3 29 672-700 5-33 (111)
93 KOG0339 ATP-dependent RNA heli 32.2 45 0.00097 40.3 3.7 22 550-579 405-426 (731)
94 PF06160 EzrA: Septation ring 31.9 2.5E+02 0.0055 34.4 10.2 91 63-158 167-265 (560)
95 PRK10049 pgaA outer membrane p 31.7 7.8E+02 0.017 31.2 14.8 132 555-715 312-464 (765)
96 PF09976 TPR_21: Tetratricopep 31.5 2.5E+02 0.0055 27.3 8.5 77 490-577 66-142 (145)
97 smart00345 HTH_GNTR helix_turn 31.1 41 0.0009 27.2 2.4 31 740-770 19-50 (60)
98 PRK10370 formate-dependent nit 31.0 2.5E+02 0.0055 29.4 8.8 66 506-581 106-172 (198)
99 PF14276 DUF4363: Domain of un 30.6 93 0.002 30.0 5.1 40 66-105 25-64 (121)
100 PF13613 HTH_Tnp_4: Helix-turn 30.5 28 0.00062 28.9 1.4 26 741-766 20-45 (53)
101 PF04285 DUF444: Protein of un 30.4 66 0.0014 38.1 4.7 6 799-804 23-28 (421)
102 TIGR02795 tol_pal_ybgF tol-pal 30.3 2.2E+02 0.0047 25.5 7.3 58 516-580 9-66 (119)
103 TIGR02498 type_III_ssaH type I 29.8 59 0.0013 30.0 3.3 28 552-579 5-32 (79)
104 TIGR02952 Sig70_famx2 RNA poly 29.5 2E+02 0.0044 28.3 7.5 30 736-765 134-163 (170)
105 PRK02603 photosystem I assembl 28.6 4.1E+02 0.0089 26.6 9.6 86 488-580 14-99 (172)
106 smart00419 HTH_CRP helix_turn_ 28.5 43 0.00092 26.1 2.0 32 740-771 8-39 (48)
107 cd00092 HTH_CRP helix_turn_hel 27.8 43 0.00092 28.1 2.0 33 739-771 24-56 (67)
108 smart00420 HTH_DEOR helix_turn 27.3 45 0.00099 26.2 2.0 30 740-769 14-43 (53)
109 PRK12519 RNA polymerase sigma 27.3 2.1E+02 0.0046 29.1 7.4 29 737-765 154-182 (194)
110 PF13374 TPR_10: Tetratricopep 26.5 1E+02 0.0022 22.8 3.7 35 554-590 3-37 (42)
111 smart00028 TPR Tetratricopepti 26.4 90 0.002 20.1 3.1 26 555-580 3-28 (34)
112 PRK12532 RNA polymerase sigma 26.3 4.7E+02 0.01 26.7 9.7 30 736-765 148-177 (195)
113 PF08581 Tup_N: Tup N-terminal 26.2 3.9E+02 0.0085 24.7 8.0 19 155-173 56-74 (79)
114 TIGR00990 3a0801s09 mitochondr 25.8 8E+02 0.017 29.9 13.1 39 654-700 453-491 (615)
115 PF14559 TPR_19: Tetratricopep 25.5 68 0.0015 26.6 2.8 51 522-582 4-54 (68)
116 PF12782 Innate_immun: Inverte 25.4 1.7E+02 0.0037 31.6 6.2 16 830-845 40-57 (311)
117 PRK05325 hypothetical protein; 25.1 87 0.0019 36.9 4.5 7 810-816 28-34 (401)
118 PF09570 RE_SinI: SinI restric 24.9 1.1E+02 0.0024 32.8 4.8 118 619-740 15-141 (221)
119 PF12298 Bot1p: Eukaryotic mit 24.8 66 0.0014 33.6 3.1 40 711-764 18-57 (172)
120 cd07649 F-BAR_GAS7 The F-BAR ( 24.8 6.1E+02 0.013 27.7 10.6 78 84-169 101-178 (233)
121 TIGR01764 excise DNA binding d 24.7 83 0.0018 24.4 3.1 39 741-785 2-40 (49)
122 COG5406 Nucleosome binding fac 24.7 93 0.002 38.5 4.6 36 140-175 870-914 (1001)
123 PRK12537 RNA polymerase sigma 24.7 1.1E+02 0.0023 31.1 4.7 29 737-765 146-174 (182)
124 KOG2753 Uncharacterized conser 24.5 71 0.0015 36.8 3.5 70 737-806 291-361 (378)
125 KOG1464 COP9 signalosome, subu 23.8 81 0.0017 35.6 3.7 58 735-792 359-418 (440)
126 PF12802 MarR_2: MarR family; 23.7 60 0.0013 26.9 2.2 32 740-771 21-52 (62)
127 PF13371 TPR_9: Tetratricopept 23.7 1.2E+02 0.0025 25.5 4.0 58 655-715 9-66 (73)
128 TIGR03879 near_KaiC_dom probab 23.0 30 0.00064 31.4 0.2 37 732-768 24-60 (73)
129 smart00668 CTLH C-terminal to 22.7 1.4E+02 0.0031 24.3 4.3 23 683-705 8-30 (58)
130 PRK14161 heat shock protein Gr 22.7 4.1E+02 0.0088 28.0 8.4 101 57-170 20-120 (178)
131 PF00515 TPR_1: Tetratricopept 22.5 1.4E+02 0.003 21.6 3.7 26 555-580 3-28 (34)
132 PF10112 Halogen_Hydrol: 5-bro 22.3 5E+02 0.011 27.2 9.1 32 140-171 155-186 (199)
133 PF14559 TPR_19: Tetratricopep 22.2 2.5E+02 0.0055 23.1 5.7 46 672-719 21-66 (68)
134 smart00418 HTH_ARSR helix_turn 22.2 1.1E+02 0.0025 24.4 3.5 39 739-777 9-47 (66)
135 PRK15359 type III secretion sy 22.1 3.8E+02 0.0082 26.4 7.8 24 557-580 96-119 (144)
136 PLN03134 glycine-rich RNA-bind 21.9 81 0.0018 31.6 3.0 10 741-750 46-55 (144)
137 PRK14140 heat shock protein Gr 21.9 4.9E+02 0.011 27.8 8.9 106 56-170 29-136 (191)
138 TIGR03060 PS_II_psb29 photosys 21.8 1.2E+02 0.0026 32.9 4.4 50 672-721 68-117 (214)
139 PF03745 DUF309: Domain of unk 21.7 57 0.0012 28.4 1.7 37 558-594 4-41 (62)
140 PRK14158 heat shock protein Gr 21.5 4.1E+02 0.0088 28.5 8.2 91 65-170 48-138 (194)
141 PRK10747 putative protoheme IX 21.4 5.6E+02 0.012 29.6 10.2 141 508-712 83-223 (398)
142 PF08765 Mor: Mor transcriptio 21.4 53 0.0011 31.3 1.5 26 740-765 72-97 (108)
143 cd05804 StaR_like StaR_like; a 21.2 1.1E+03 0.024 25.8 15.8 66 507-580 148-213 (355)
144 KOG2141 Protein involved in hi 20.9 3.2E+02 0.0068 34.7 8.1 28 248-287 298-325 (822)
145 KOG2003 TPR repeat-containing 20.9 3E+02 0.0064 33.2 7.5 160 522-717 503-699 (840)
146 PLN03134 glycine-rich RNA-bind 20.7 1E+02 0.0022 31.0 3.4 12 752-763 46-57 (144)
147 PF04218 CENP-B_N: CENP-B N-te 20.6 60 0.0013 27.3 1.5 22 741-762 23-44 (53)
148 PRK12533 RNA polymerase sigma 20.5 2.9E+02 0.0064 29.4 7.1 29 736-764 146-174 (216)
149 COG5187 RPN7 26S proteasome re 20.2 1E+02 0.0022 35.1 3.6 53 736-788 327-379 (412)
No 1
>KOG1076 consensus Translation initiation factor 3, subunit c (eIF-3c) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.8e-257 Score=2140.62 Aligned_cols=786 Identities=56% Similarity=0.877 Sum_probs=707.3
Q ss_pred CccccCCCCCCCccccCCccccccccccccccccccccccccCCCCCCCCcCCceeecccccccHHHHHHHHHHHHHhhh
Q 002522 2 ASRFWTQGGSDSEEESSDYEDDVENEGVETTTQTAGSRYLQANASDSDDSDGQKRVVRSAKDKRFEEMAATVDQMKNAMK 81 (913)
Q Consensus 2 ~SrFw~~~~s~s~~~~s~~~~~~~~~~~~~~~~~~~~rf~~~~~sdsd~dee~kRVVkSaKdKr~eEl~~~i~~i~n~~k 81 (913)
|||||.+ +|+|++++|.++++++. ..+......+.++|+++|+||||+++|||||+||..+|++|+|+++
T Consensus 1 mSrFf~~-~sese~essse~ee~~~---------~n~~~~s~~~~~~d~e~d~krvv~~~kdkrfee~~~~i~~~~~a~~ 70 (843)
T KOG1076|consen 1 MSRFFTQ-GSESESESSSEEEEVEE---------ENSNKLSELDDSEDDEEDTKRVVRAAKDKRFEELTNIIKTIRNAMK 70 (843)
T ss_pred Ccccccc-Ccccccccchhhhhhhc---------cccccccccccccccchhhhhhhcccccccHHHHhhhHHHHHhHHH
Confidence 8999999 44444343333333332 0222221111122225789999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHHHHHHHHhhhhccCC--CCHHHHHHHHhHHHHHHHHHhchHHHhhcChhhhhhhHHHHHHHHHhhH
Q 002522 82 INDWVSLQESFDKINKQLDKVMRVTEAEK--VPTLYIKALVMLEDFLNQAMANKEAKKKMSSSNAKALNSMKQKLKKNNK 159 (913)
Q Consensus 82 i~Dw~~i~~~Fd~L~K~~~K~~~~~~~~g--~P~~yIk~L~~Led~v~e~~~dke~kKKms~~nakalntlKQklkK~~k 159 (913)
|+||+.+++.|++|+|.+.|+..++.+++ +|+||||+|++||||+|+.|+|++++|||+++|+||||+||||+||+++
T Consensus 71 ~~d~~~~~~~F~~l~k~~~ka~~~~~~e~~~~p~~yik~L~eleD~~Ne~~e~~~~k~~lsknN~kaL~~lrqk~~k~~~ 150 (843)
T KOG1076|consen 71 IRDQVGLLEKFEKLNKAYSKAKEVDEKENVKVPRFYIKTLVELEDFLNELWDDKEGKKKLSKSNSKALNSLRQKLKKYNK 150 (843)
T ss_pred HhhccchhhhhHHHHhhhccccchhhhcCCCCchHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhHHHHHHHHHhhc
Confidence 99999999999999999999999986655 8999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCcccccCcccchhhhhccccccccCCCccccC---CCCCCCCCCCC------ccccccCCCCCceee
Q 002522 160 QYEDLINKYRENPESEEVKDEDEESEEEEEDEDEEFEEDPDNIRA---GSGSDNDDDDD------GEEAEDTNDSGWVRQ 230 (913)
Q Consensus 160 ~~e~~i~~yrenPe~~~~~~~~~~d~~~~~~sd~~~~~~~~~~~~---~~~s~~~~~~~------~e~~~~~~~~~w~~~ 230 (913)
.|+..|+.||++|+...++.++-.++++ |++++ +..|.. ++++++.++.+ ++.++++++..|+.+
T Consensus 151 ~~~~~i~~~r~~Pd~~~~~~~e~~~~D~-dd~~d-----~~~~ds~~~~~~~~s~d~e~~~~~~r~~~~e~~d~~~we~v 224 (843)
T KOG1076|consen 151 DFEDDIKRYRENPDQENEENPETQDADD-DDSDD-----SEDWDSTPSSSDKDSEDEEDKMAKLRDDPEEDDDGVTWELV 224 (843)
T ss_pred cHHHHHHHhccCcccccccccccccccc-ccccc-----hhhhcCCCcccCCccccchhhHHHhccccccccCCcceeee
Confidence 9999999999999977654433111111 11111 111211 11111111110 123345677899988
Q ss_pred cccCccccccccCCCCCCCHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHhcCccc--hhhhhhhhhhhhcccCCC
Q 002522 231 TGRRDKSIDKQFKNPSEITWENVNKKFKEVVAARGRKGTGRFEQVEQLTFLTKVAKTPAQ--KLEILFSLISAQFDVNPG 308 (913)
Q Consensus 231 ~~~~~~~~~k~f~~~~eit~~~v~kkL~eIv~~RGKK~tDr~eqi~~L~~L~~iak~~~~--~i~il~~lIsa~FD~~~~ 308 (913)
.+++ .++++|.++.||||++|+|||++|++|||||+|||.+||.+|++|++||++|++ .|+|+|+||||+||+|++
T Consensus 225 ~s~~--~~~~~~~~~eEit~~~v~kkl~eI~~ARGKK~tdr~~~i~~L~~L~~IA~~~~~~~~v~i~f~iIsa~fD~N~~ 302 (843)
T KOG1076|consen 225 VSGK--EKPKMFQKPEEITHADVFKKLNEIMSARGKKTTDRQELIDLLEELLTIAETPGQGVKVKIKFNIISARFDYNAG 302 (843)
T ss_pred cccc--ccccccCCchhcCHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHcccCcceEEEEEEEEeehhhccCcC
Confidence 7654 568999999999999999999999999999999999999999999999999966 999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHhhCCCeEEecCCCCCccccccccCCCCcEEEechHHHHHHHhhHHHHHhhccCCCC
Q 002522 309 LSGHMPINVWKKCVVNMLIVLDILTQYPNIVVNDMVEPDENETQKAADYNGTIRVWGNLVAFVERIDVEFFKSLQSIDPH 388 (913)
Q Consensus 309 ~~~~M~~~~Wk~~~~~i~~ll~iL~~~~~i~v~e~~~~~e~e~~~~~~~~~~~~v~Gsl~sfvERLDdEf~KsLQ~iDpH 388 (913)
+++|||+++|++|+++|+.|||||.+||+|+|+++++++|+|+ ..+++|+++|+|||++|||||||||+|||||||||
T Consensus 303 ~s~yMpid~W~~~l~~~~slLdIL~~~~~i~~~e~ve~eE~E~--~~d~dg~~rV~Gsi~afvERlDdEF~KsLq~iDPH 380 (843)
T KOG1076|consen 303 LSGYMPIDQWKKCLNNMNSLLDILDANPNIVVVETVEAEEDEN--LKDADGVIRVQGSILAFVERLDDEFTKSLQNIDPH 380 (843)
T ss_pred cccCcCHHHHHHHHHHHHHHHHHHhcCCCEEEeeeeccccccc--cccCCCcEEEeccHHHHHHHHhHHHHHHHHccCCC
Confidence 9999999999999999999999999999999999997665543 34889999999999999999999999999999999
Q ss_pred cHHHHHHhhChhHHHHHHHHHHHHHHHhcchhhhhHHHHHHHhhhccCchhHHHHHHHHHhhcccCCCCchhhhhhccCC
Q 002522 389 TREYVERLRDEPMFLVLAQDVQEYLEQAGEFKAASKVALRRVELIYYKPQEVYDAMRKLAEQTDEGDNGEKAIEEESRGP 468 (913)
Q Consensus 389 s~EYveRLkDE~~l~~l~~r~q~Y~e~~~~~~~~~rv~lrRlEhiYyK~d~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (913)
|.|||+|||||+.||+||+++|.|||++|...++||++|||||||||||++||++|++.+|..+.
T Consensus 381 s~dYverLkDE~~~~~li~r~q~Y~Er~g~~~~~~rv~l~RiehiYYKpe~v~d~~~~~a~~~~~--------------- 445 (843)
T KOG1076|consen 381 SNDYVERLKDEPSVYALIERVQDYFERTGDSEAVCRVYLRRIEHIYYKPEEVFDAMEELAWNEIP--------------- 445 (843)
T ss_pred cHHHHHHHhhhHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHcChHhhhhHHHHHHhhccC---------------
Confidence 99999999999999999999999999999999999999999999999999999999999998773
Q ss_pred CCcccCCcccCCCCCCCCChHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHhhcCChHHHHHHHHhhhhhhhccCCChhh
Q 002522 469 SAFISVPELVPRKPTFPENSRTMMDMLVSLIYKYGDERTKARAMLCDIYHHALLDEFSTARDLLLMSHLQDNVQQMDVLS 548 (913)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~li~~L~~~Iyk~~~~r~r~RAmLc~IYh~ALhd~~~~ARDLlLmShLQe~I~~~Di~t 548 (913)
++|..+.+-+++++++++++..||+.||+|||++|++|+||||||||||||||||+|++|||||||||||++|+||||+|
T Consensus 446 ~~~~~s~ts~~~~~~~~~~~~~lmd~Lc~~iY~~~d~r~rtRAmLchIYh~AL~d~f~~ARDlLLMSHlQdnI~h~D~st 525 (843)
T KOG1076|consen 446 EAFKSSGTSVDRKPTFAESSDALMDGLCKYIYKNDDDRLRTRAMLCHIYHHALHDNFYTARDLLLMSHLQDNIQHADIST 525 (843)
T ss_pred ccccccCCCccccccccccHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccChhH
Confidence 33333444478889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcccHHHHHHHHHhhhhCCccchhhcccccccccCCCChhhHHHHHHhCCCcccccCHHHHHHH
Q 002522 549 QILFNRAMAQLGLCAFRVGLVAEGHSCLSELYSGGKVKELLAQGISQSRYHEKTPEQERLERRRQMPYHMHINLELLEAV 628 (913)
Q Consensus 549 QILyNRamvQLGLcAFR~GlI~EAh~~L~ei~~s~R~KELLAQG~~~~r~~ekt~EQEk~ErrRqlPfHMHINlELLE~v 628 (913)
|||||||||||||||||+|+|+|||+||+||+++||+|||||||++++|+|++||||+++||||||||||||||||||||
T Consensus 526 QIL~NRtmvQLGLCAFR~Gmi~EaH~~L~dl~st~r~kELLgQgv~~~~~he~t~eQe~~eR~rQlPyHmHINLELlEcV 605 (843)
T KOG1076|consen 526 QILFNRTMVQLGLCAFRQGMIKEAHQCLSDLQSTGRVKELLGQGVLQRRQHEKTAEQEKIERRRQLPYHMHINLELLECV 605 (843)
T ss_pred HHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcchHHHHHhhhhhhhhhhccChhhHHHHHhhcCchhhhccHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhHhhcchhhhccCCCccchhchHHHHHHHHhhccccccCCCcchhhHHHHHHHHhhcCCHHHHHHHHhc-cccccc
Q 002522 629 HLICAMLLEVPNMAANTHGAKSKVISKTFRRLLEVSERQTFTGPPENVRDHVMAATRALTKGDFQKAFDVINS-LDVWRL 707 (913)
Q Consensus 629 ~lisaMLlEIP~mAa~~~d~rrr~isK~Frr~Le~~erq~f~GPPEn~rdhV~aA~kal~~GdWk~~~~~I~s-ikiW~l 707 (913)
|||||||||||+|||+.+|+|+|||||+|||+|+++|||+|+|||||+|||||||+|||++|||++|.+||.+ +|||+|
T Consensus 606 yLtcaMLlEIP~MAA~~~d~Rrr~iSk~frr~Le~serqsf~gPPEn~RehVvaAsKAm~~Gnw~~c~~fi~nn~KvW~L 685 (843)
T KOG1076|consen 606 YLTCAMLLEIPYMAAHESDARRRMISKSFRRQLEHSERQSFTGPPENTREHVVAASKAMQKGNWQKCFEFIVNNIKVWDL 685 (843)
T ss_pred HHHHHHHHhhhHHhhhhhhhhcccccHHHHHHHHHHhhccccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhhhhHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999987 999999
Q ss_pred cCChHHHHHHHHHHHHHHhhhhceeeccccccccCHHHHHhhcCCCccchhHhhhhhhcccccceeeccCCceEEEccCC
Q 002522 708 LRNRESVLEMLKAKIKEEALRTYLFTFTSSYDSLSLDQLTKMFDLSEVQTHSIVSKMMINEELHASWDQPTHCIIFHDVE 787 (913)
Q Consensus 708 ~p~~e~v~~mL~~kIqeeaLRtYlfty~~~y~slSl~~L~~~F~L~~~~V~sivskmI~n~el~As~D~~~~~iv~~~~e 787 (913)
|||++.|+.||++||||||||||||||+++|+|+||.+||+||+||+++||+||||||+|+||+|+|||||+||||||+|
T Consensus 686 fpn~d~V~~Ml~~rIqEEsLRTYLftYss~Y~SvSl~~LA~mFdLp~~~VhsIiSkmiineEl~AslDqpt~~iv~hrvE 765 (843)
T KOG1076|consen 686 FPNADTVLDMLTERIQEESLRTYLFTYSSVYDSVSLAKLADMFDLPEPKVHSIISKMIINEELHASLDQPTQCIVMHRVE 765 (843)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccHHHHHHHhCCCchhHHHHHHHHHHHHHhhhccCCCcceEEEeecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHhHhhhhhhhhHhhhcCCCCC
Q 002522 788 HSRLQALAFQLTEKLSILAESNERAMESRTGGGLD 822 (913)
Q Consensus 788 ~trLQ~LAl~laeKv~~lve~NEr~~~~k~g~~g~ 822 (913)
|||||.||+||+||+.+|+|+||++++.|+|++|+
T Consensus 766 ~srlq~La~qL~eKl~~L~E~NE~~~e~ktg~~g~ 800 (843)
T KOG1076|consen 766 PSRLQSLAVQLSEKLAILAENNEKVFESKTGGGGL 800 (843)
T ss_pred chHHHHHHHHHHHHHHHHHHhccchhccccCCCCC
Confidence 99999999999999999999999999999998764
No 2
>PF05470 eIF-3c_N: Eukaryotic translation initiation factor 3 subunit 8 N-terminus; InterPro: IPR008905 The largest of the mammalian translation initiation factors, eIF3, consists of at least eight subunits ranging in mass from 35 to 170 kDa. eIF3 binds to the 40 S ribosome in an early step of translation initiation and promotes the binding of methionyl-tRNAi and mRNA [].; GO: 0003743 translation initiation factor activity, 0006413 translational initiation, 0005852 eukaryotic translation initiation factor 3 complex
Probab=100.00 E-value=4.9e-185 Score=1596.44 Aligned_cols=590 Identities=53% Similarity=0.828 Sum_probs=509.0
Q ss_pred cccccC-CCCCCCCcCCceeecccccccHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHhhhhccCCCCHHHHH
Q 002522 39 RYLQAN-ASDSDDSDGQKRVVRSAKDKRFEEMAATVDQMKNAMKINDWVSLQESFDKINKQLDKVMRVTEAEKVPTLYIK 117 (913)
Q Consensus 39 rf~~~~-~sdsd~dee~kRVVkSaKdKr~eEl~~~i~~i~n~~ki~Dw~~i~~~Fd~L~K~~~K~~~~~~~~g~P~~yIk 117 (913)
+|+++. ++|||||||+|||||||||||||||+++|++|+|++|||||++|+++||+|+|+++|+++++..+|+|+||||
T Consensus 1 ~~l~~~~~~~s~deee~kRVVkSaKdKr~del~~~i~~i~n~~ki~Dw~~i~~eFd~L~k~~~K~~~~~~~~~~P~~yir 80 (595)
T PF05470_consen 1 KFLRDDSDSDSSDEEEEKRVVKSAKDKRFDELEEIIKQIRNAMKINDWSSILTEFDKLNKQLEKSKKIQQNEGIPRFYIR 80 (595)
T ss_pred CcccccccccccccccCcccccchHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhhhhhcCCCChhHHH
Confidence 466643 3456667889999999999999999999999999999999999999999999999999988888899999999
Q ss_pred HHHhHHHHHHHHHhchHHHhhcChhhhhhhHHHHHHHHHhhHHHHHHHHHHhhCCCcccccCcccchhhhhccccccc-c
Q 002522 118 ALVMLEDFLNQAMANKEAKKKMSSSNAKALNSMKQKLKKNNKQYEDLINKYRENPESEEVKDEDEESEEEEEDEDEEF-E 196 (913)
Q Consensus 118 ~L~~Led~v~e~~~dke~kKKms~~nakalntlKQklkK~~k~~e~~i~~yrenPe~~~~~~~~~~d~~~~~~sd~~~-~ 196 (913)
|||+|||||+++|+||+++||||++||||||+|||||||+||+|+++|++||+||+.|++++++++++++++++++++ +
T Consensus 81 ~l~~Led~v~e~~~~ke~~Kkms~~nakaln~lkQklkK~~k~~e~~i~~yrenPe~~~~e~~~~~~~~~~~~~~~~~~~ 160 (595)
T PF05470_consen 81 ALVELEDFVNETWADKEAKKKMSKNNAKALNTLKQKLKKYNKEYEAQIAKYRENPEAFEEEEEEDEDDDSDDSDDSDDSE 160 (595)
T ss_pred HHHHHHHHHHHHHhhhHhhhhcCHHhHHHHHHHHHHHHhhhhhHHHHHHHHHhCCcccccccchhccccccccchhhhhh
Confidence 999999999999999999999999999999999999999999999999999999999988766544333221111111 1
Q ss_pred CCCccccCCCCCCCCCCCCccccccCCCCCceeecccC-ccccccccCCCCCCCHHHHHHHHHHHHHhhcCCCCChHHHH
Q 002522 197 EDPDNIRAGSGSDNDDDDDGEEAEDTNDSGWVRQTGRR-DKSIDKQFKNPSEITWENVNKKFKEVVAARGRKGTGRFEQV 275 (913)
Q Consensus 197 ~~~~~~~~~~~s~~~~~~~~e~~~~~~~~~w~~~~~~~-~~~~~k~f~~~~eit~~~v~kkL~eIv~~RGKK~tDr~eqi 275 (913)
+++.+....++++++... .++.+++++..|....+++ ....+++|+++.+||+++|++||+||+++||||||||.+||
T Consensus 161 ~~~~~~~~~skssesKk~-~~k~eddde~~~~~~~~~~~~~~~~~~~~k~~eiT~~~v~kkL~eIv~sRGKK~TDr~eqI 239 (595)
T PF05470_consen 161 DDSSKSEEVSKSSESKKK-SEKEEDDDEEWEEVKVGKSDKSEKKKMFEKDKEITPEMVFKKLKEIVESRGKKGTDRQEQI 239 (595)
T ss_pred hhccchhhhhccchhhhc-cccccccccccccccccccccccchhccccccchhHHHHHHHHHHHHHHhccccccHHHHH
Confidence 111111111100000000 0011122222232222222 23445788999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCccchhhhhhhhhhhhcccCCCCCCCCCHHHHHHHHHHHHHHHHHHhhCCCeEEecCCCCCc--ccccc
Q 002522 276 EQLTFLTKVAKTPAQKLEILFSLISAQFDVNPGLSGHMPINVWKKCVVNMLIVLDILTQYPNIVVNDMVEPDE--NETQK 353 (913)
Q Consensus 276 ~~L~~L~~iak~~~~~i~il~~lIsa~FD~~~~~~~~M~~~~Wk~~~~~i~~ll~iL~~~~~i~v~e~~~~~e--~e~~~ 353 (913)
++|++|+++|++|++.|+||++|||++||+|+++.+|||+++|++|+++|..||+||.+||+|+|++.+.++. .+.++
T Consensus 240 ~~L~~L~~ia~~~~~~i~Il~~lIsa~FD~~~~~~~~M~~~~W~~~~~~i~~Ll~lL~~n~~~~l~~~~~e~~e~~e~e~ 319 (595)
T PF05470_consen 240 RQLEKLLEIAKTPYQKIEILLHLISARFDYNSSISDYMPIEQWKKCLNNINELLDLLEENPNIVLSEEVAEEDENLEDEP 319 (595)
T ss_pred HHHHHHHHHHcCcccchhHHHhhhHHHHccCCccccCcCHHHHHHHHHHHHHHHHHHHhCCCEEEecCCCcccccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999987776542 23345
Q ss_pred ccCCCCcEEEechHHHHHHHhhHHHHHhhccCCCCcHHHHHHhhChhHHHHHHHHHHHHHHHhcchhhhhHHHHHHHhhh
Q 002522 354 AADYNGTIRVWGNLVAFVERIDVEFFKSLQSIDPHTREYVERLRDEPMFLVLAQDVQEYLEQAGEFKAASKVALRRVELI 433 (913)
Q Consensus 354 ~~~~~~~~~v~Gsl~sfvERLDdEf~KsLQ~iDpHs~EYveRLkDE~~l~~l~~r~q~Y~e~~~~~~~~~rv~lrRlEhi 433 (913)
+++.+++++|+|||++||||||||||||||+|||||+|||+||+||+.||+||+++|.|||+++....+||++|||||||
T Consensus 320 ~~~~~~~~~i~Gsl~s~verLddE~~KsLq~~D~hs~eYv~RL~dE~~l~~l~~~~q~Y~e~~~~~~~~~r~~lrrlehi 399 (595)
T PF05470_consen 320 QANKDGPIRIRGSLVSFVERLDDEFTKSLQNIDPHSSEYVERLKDEQRLYNLIDRVQQYYERTGDEEALARVALRRLEHI 399 (595)
T ss_pred ccCCCCcEEEechHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHhcHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCchhHHHHHHHHHhhcccCCCCchhhhhhccCCCCcccCCcccCCCCCCCCChHHHHHHHHHHHHhcCCcchhhHHHH
Q 002522 434 YYKPQEVYDAMRKLAEQTDEGDNGEKAIEEESRGPSAFISVPELVPRKPTFPENSRTMMDMLVSLIYKYGDERTKARAML 513 (913)
Q Consensus 434 YyK~d~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~L~~~Iyk~~~~r~r~RAmL 513 (913)
||||+.++.+.+..+|..... ....++..+..+.++..+|+.||.|||++|++++|+||||
T Consensus 400 YyK~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~li~~L~~~iy~~~~~~~r~rA~L 460 (595)
T PF05470_consen 400 YYKPDQVIKAEEWNAWKSQSS-------------------SKESVPSPPADEESPSELIDRLCKYIYKDGDERLRTRAML 460 (595)
T ss_pred hCCcHHHHhhhhhhccccccc-------------------cccccCCCCccCCCHHHHHHHHHHHHHHCCcHHHHHHHHH
Confidence 999999998744444443311 1122333344556789999999999999999999999999
Q ss_pred HHHHHHhhcCChHHHHHHHHhhhhhhhccCCChhhHHHHHHHHHHHHHHHHhcccHHHHHHHHHhhhhCCccchhhcccc
Q 002522 514 CDIYHHALLDEFSTARDLLLMSHLQDNVQQMDVLSQILFNRAMAQLGLCAFRVGLVAEGHSCLSELYSGGKVKELLAQGI 593 (913)
Q Consensus 514 c~IYh~ALhd~~~~ARDLlLmShLQe~I~~~Di~tQILyNRamvQLGLcAFR~GlI~EAh~~L~ei~~s~R~KELLAQG~ 593 (913)
||||||||||+|++|||||||||||++|++|||+||||||||||||||||||+|+|.|||+||+|||++||+|||||||+
T Consensus 461 c~IY~~AL~d~~~~ARDllLmShlqe~I~~~D~~tQILyNR~~vQLGLcAFR~G~I~eah~~L~el~~s~r~kELLaQg~ 540 (595)
T PF05470_consen 461 CHIYHHALHDRYYEARDLLLMSHLQESIQHSDISTQILYNRAMVQLGLCAFRAGLIKEAHQCLSELCSSGRVKELLAQGV 540 (595)
T ss_pred HHHHHHHHHhhHHHHHHHHHHhHHHHhhhccCHHHHHHHhHHHHHHHHHHHHcCCHHHHHHHHHHHHcccchhhhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCChhhHHHHHHhCCCcccccCHHHHHHHHHHHhHhhcchhhhccCCCc
Q 002522 594 SQSRYHEKTPEQERLERRRQMPYHMHINLELLEAVHLICAMLLEVPNMAANTHGA 648 (913)
Q Consensus 594 ~~~r~~ekt~EQEk~ErrRqlPfHMHINlELLE~v~lisaMLlEIP~mAa~~~d~ 648 (913)
+++|++++|||||++|||||||||||||||||||||||||||||||+||++.+++
T Consensus 541 ~~~~~~e~t~eqe~~Er~r~lPfHmHINleLlE~v~l~samLlEiP~mA~~~~~~ 595 (595)
T PF05470_consen 541 SQQRYHEKTPEQEKAERRRQLPFHMHINLELLECVYLTSAMLLEIPNMAAHSSDA 595 (595)
T ss_pred cchhcccCChhhhHHHHHhcccccccccHHHHHHHHHHHHHHHHhHHHhhcccCC
Confidence 9999999999999999999999999999999999999999999999999998863
No 3
>PF01399 PCI: PCI domain; InterPro: IPR000717 A homology domain of unclear function, occurs in the C-terminal region of several regulatory components of the 26S proteasome as well as in other proteins. This domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15) []. Apparently, all of the characterised proteins containing PCI domains are parts of larger multi-protein complexes. Proteins with PCI domains include budding yeast proteasome regulatory components Rpn3(Sun2), Rpn5, Rpn6, Rpn7and Rpn9 []; mammalian proteasome regulatory components p55, p58 and p44.5, and translation initiation factor 3 complex subunits p110 and INT6 [, ]; Arabidopsis COP9 and FUS6/COP11 []; mammalian G-protein pathway suppressor GPS1, and several uncharacterised ORFs from plant, nematodes and mammals. The complete homology domain comprises approx. 200 residues, the highest conservation is found in the C-terminal half. Several of the proteins mentioned above have no detectable homology to the N-terminal half of the domain.; GO: 0005515 protein binding; PDB: 3TXM_A 3TXN_A 1UFM_A 3CHM_A 3T5X_A 3T5V_B.
Probab=99.04 E-value=6e-10 Score=101.72 Aligned_cols=103 Identities=25% Similarity=0.328 Sum_probs=93.3
Q ss_pred HHHHHHHHhhcCCHHHHHHHHhcc-ccccccCChHHHHHHHHHHHHHHhhhhceeeccccccccCHHHHHhhcCCCccch
Q 002522 679 HVMAATRALTKGDFQKAFDVINSL-DVWRLLRNRESVLEMLKAKIKEEALRTYLFTFTSSYDSLSLDQLTKMFDLSEVQT 757 (913)
Q Consensus 679 hV~aA~kal~~GdWk~~~~~I~si-kiW~l~p~~e~v~~mL~~kIqeeaLRtYlfty~~~y~slSl~~L~~~F~L~~~~V 757 (913)
++....+++..||+..+.+.+... .-|-.-+.-....+.|..+|+..+|++|++ .|.++|++.||++|+++.+.|
T Consensus 2 ~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~i~~~~l~~l~~----~y~~i~~~~ia~~l~~~~~~v 77 (105)
T PF01399_consen 2 PYSELLRAFRSGDLQEFEEFLEKHSESLFKDPFLAEYVEQLKEKIRRRNLRQLSK----PYSSISISEIAKALQLSEEEV 77 (105)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHTCHHHHHCTTHHHHHHHHHHHHHHHHHHHHHH----C-SEEEHHHHHHHHTCCHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHH----HhcccchHHHHHHhccchHHH
Confidence 567788999999999999999988 777777888889999999999999999988 788889999999999999999
Q ss_pred hHhhhhhhcccccceeeccCCceEEEcc
Q 002522 758 HSIVSKMMINEELHASWDQPTHCIIFHD 785 (913)
Q Consensus 758 ~sivskmI~n~el~As~D~~~~~iv~~~ 785 (913)
..+|.+||.++.|.|.+|+++++|+|++
T Consensus 78 E~~l~~~I~~~~i~~~ID~~~~~v~~~k 105 (105)
T PF01399_consen 78 ESILIDLISNGLIKAKIDQVNGVVVFSK 105 (105)
T ss_dssp HHHHHHHHHTTSSEEEEETTTTEEEE-S
T ss_pred HHHHHHHHHCCCEEEEEECCCCEEEecC
Confidence 9999999999999999999999999975
No 4
>smart00753 PAM PCI/PINT associated module.
Probab=98.62 E-value=4.2e-08 Score=88.34 Aligned_cols=84 Identities=27% Similarity=0.404 Sum_probs=70.4
Q ss_pred HHHHHHHhhhhceeeccccccccCHHHHHhhcCCCccchhHhhhhhhcccccceeeccCCceEEEccCCCChHHHHHHHH
Q 002522 719 KAKIKEEALRTYLFTFTSSYDSLSLDQLTKMFDLSEVQTHSIVSKMMINEELHASWDQPTHCIIFHDVEHSRLQALAFQL 798 (913)
Q Consensus 719 ~~kIqeeaLRtYlfty~~~y~slSl~~L~~~F~L~~~~V~sivskmI~n~el~As~D~~~~~iv~~~~e~trLQ~LAl~l 798 (913)
...++....+..|++|+..|.+++++.||+.|+||.+.|...|.+||.++.|.|.+|+.+++|+|+++.+.. +....++
T Consensus 3 ~~~l~~~~~~~~l~~l~~~y~~i~~~~i~~~~~l~~~~vE~~i~~~i~~~~l~~~ID~~~~~v~~~~~~~r~-~~~~~~~ 81 (88)
T smart00753 3 VERLQRKIRLTNLLQLSEPYSSISLSDLAKLLGLSVPEVEKLVSKAIRDGEISAKIDQVNGIVEFEEVDPRR-SEPLAQF 81 (88)
T ss_pred HHHHHHHHHHHHHHHHhHHhceeeHHHHHHHhCcCHHHHHHHHHHHHHCCCeEEEEcCcCCEEEECCCchhh-hhHHHHH
Confidence 345666667777788888899999999999999999999999999999999999999999999999877765 3344456
Q ss_pred HHHHh
Q 002522 799 TEKLS 803 (913)
Q Consensus 799 aeKv~ 803 (913)
.+++.
T Consensus 82 ~~~l~ 86 (88)
T smart00753 82 AETLK 86 (88)
T ss_pred HHHhh
Confidence 65554
No 5
>smart00088 PINT motif in proteasome subunits, Int-6, Nip-1 and TRIP-15. Also called the PCI (Proteasome, COP9, Initiation factor 3) domain. Unknown function.
Probab=98.62 E-value=4.2e-08 Score=88.34 Aligned_cols=84 Identities=27% Similarity=0.404 Sum_probs=70.4
Q ss_pred HHHHHHHhhhhceeeccccccccCHHHHHhhcCCCccchhHhhhhhhcccccceeeccCCceEEEccCCCChHHHHHHHH
Q 002522 719 KAKIKEEALRTYLFTFTSSYDSLSLDQLTKMFDLSEVQTHSIVSKMMINEELHASWDQPTHCIIFHDVEHSRLQALAFQL 798 (913)
Q Consensus 719 ~~kIqeeaLRtYlfty~~~y~slSl~~L~~~F~L~~~~V~sivskmI~n~el~As~D~~~~~iv~~~~e~trLQ~LAl~l 798 (913)
...++....+..|++|+..|.+++++.||+.|+||.+.|...|.+||.++.|.|.+|+.+++|+|+++.+.. +....++
T Consensus 3 ~~~l~~~~~~~~l~~l~~~y~~i~~~~i~~~~~l~~~~vE~~i~~~i~~~~l~~~ID~~~~~v~~~~~~~r~-~~~~~~~ 81 (88)
T smart00088 3 VERLQRKIRLTNLLQLSEPYSSISLSDLAKLLGLSVPEVEKLVSKAIRDGEISAKIDQVNGIVEFEEVDPRR-SEPLAQF 81 (88)
T ss_pred HHHHHHHHHHHHHHHHhHHhceeeHHHHHHHhCcCHHHHHHHHHHHHHCCCeEEEEcCcCCEEEECCCchhh-hhHHHHH
Confidence 345666667777788888899999999999999999999999999999999999999999999999877765 3344456
Q ss_pred HHHHh
Q 002522 799 TEKLS 803 (913)
Q Consensus 799 aeKv~ 803 (913)
.+++.
T Consensus 82 ~~~l~ 86 (88)
T smart00088 82 AETLK 86 (88)
T ss_pred HHHhh
Confidence 65554
No 6
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=98.24 E-value=1.9e-06 Score=94.56 Aligned_cols=9 Identities=11% Similarity=0.327 Sum_probs=3.9
Q ss_pred HHHHHHHHH
Q 002522 489 RTMMDMLVS 497 (913)
Q Consensus 489 ~~li~~L~~ 497 (913)
..+|+.+|.
T Consensus 142 ~q~i~~~~~ 150 (465)
T KOG3973|consen 142 TQLIDSALR 150 (465)
T ss_pred HHHHHHHHH
Confidence 444444443
No 7
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=98.20 E-value=2.3e-06 Score=102.93 Aligned_cols=16 Identities=25% Similarity=0.219 Sum_probs=12.2
Q ss_pred HHhHhhhhhhhhHhhh
Q 002522 801 KLSILAESNERAMESR 816 (913)
Q Consensus 801 Kv~~lve~NEr~~~~k 816 (913)
-+++|-..|||++.+-
T Consensus 1118 iIsqLdpvnarllnmi 1133 (1282)
T KOG0921|consen 1118 IISQLDPVNARLLNMI 1133 (1282)
T ss_pred HhhccCchhHHHHHHH
Confidence 3567788899998763
No 8
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=98.11 E-value=6.1e-06 Score=99.46 Aligned_cols=45 Identities=27% Similarity=0.356 Sum_probs=22.2
Q ss_pred ccccCCCCCCCH----HHHHHHHHH--HHHhhcCCCCChHHHHH--HHHHHHH
Q 002522 239 DKQFKNPSEITW----ENVNKKFKE--VVAARGRKGTGRFEQVE--QLTFLTK 283 (913)
Q Consensus 239 ~k~f~~~~eit~----~~v~kkL~e--Iv~~RGKK~tDr~eqi~--~L~~L~~ 283 (913)
++.|+...+|.. +.|.+...+ ++.-||..+.-+.-||. +|+..++
T Consensus 368 ~~~~a~re~lpva~~~~~i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ 420 (1282)
T KOG0921|consen 368 DKITAQREELPVAQYRSEILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLE 420 (1282)
T ss_pred hhhhhhhhhCcHHHHHHHHHHHHhcCceeeEeecccccchhHHHHHHHHHHhh
Confidence 344554555543 333333322 34457777776666663 4444443
No 9
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.32 E-value=0.0024 Score=70.81 Aligned_cols=61 Identities=23% Similarity=0.414 Sum_probs=55.2
Q ss_pred hceeeccccccccCHHHHHhhcCCCccchhHhhhhhhcccccceeeccCCceEEEccCCCC
Q 002522 729 TYLFTFTSSYDSLSLDQLTKMFDLSEVQTHSIVSKMMINEELHASWDQPTHCIIFHDVEHS 789 (913)
Q Consensus 729 tYlfty~~~y~slSl~~L~~~F~L~~~~V~sivskmI~n~el~As~D~~~~~iv~~~~e~t 789 (913)
|-|..-+..|..+|.+.|...|++|..++.+|++.||+.+-++|++||..+.|+|...|+-
T Consensus 306 hNlls~Skly~nisf~~Lg~ll~i~~ekaekiaa~MI~qeRmng~IDQ~egiihFe~~e~l 366 (399)
T KOG1497|consen 306 HNLLSASKLYNNISFEELGALLKIDAEKAEKIAAQMITQERMNGSIDQIEGIIHFEDREEL 366 (399)
T ss_pred HhHHHHHHHHHhccHHHHHHHhCCCHHHHHHHHHHHHhHHHhccchHhhcceEeecchhhh
Confidence 3455668899999999999999999999999999999999999999999999999876553
No 10
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=95.64 E-value=0.044 Score=61.56 Aligned_cols=125 Identities=18% Similarity=0.244 Sum_probs=108.2
Q ss_pred chhhHHHHHHHHhhcCCHHHHHHHHhccccccccCChHHHHHHHHHHHHHHhhhhceeeccccccccCHHHHHhhcCCCc
Q 002522 675 NVRDHVMAATRALTKGDFQKAFDVINSLDVWRLLRNRESVLEMLKAKIKEEALRTYLFTFTSSYDSLSLDQLTKMFDLSE 754 (913)
Q Consensus 675 n~rdhV~aA~kal~~GdWk~~~~~I~sikiW~l~p~~e~v~~mL~~kIqeeaLRtYlfty~~~y~slSl~~L~~~F~L~~ 754 (913)
+-++.++.--.|+..||.++-.++. ++|.-+|.-..-...|.+||.--||=--+|+-.+.--++|++.+|+.-.+|.
T Consensus 232 T~~eWL~dll~Afn~Gdl~~f~~l~---~~~~~~p~L~~~e~~L~qKI~LmaLiEi~F~rpa~~R~lsf~~Ia~~tkip~ 308 (380)
T KOG2908|consen 232 TNREWLKDLLIAFNSGDLKRFESLK---GVWGKQPDLASNEDFLLQKIRLLALIEITFSRPANERTLSFKEIAEATKIPN 308 (380)
T ss_pred CcHHHHHHHHHHhccCCHHHHHHHH---HHhccCchHHHHHHHHHHHHHHHHHHHHHhcCcchhccccHHHHHHHhCCCH
Confidence 4578899999999999998877664 4899999888888999999999999988898888999999999999999999
Q ss_pred cchhHhhhhhhcccccceeeccCCceEEEccCCCChH--HHHHHHHHHHHh
Q 002522 755 VQTHSIVSKMMINEELHASWDQPTHCIIFHDVEHSRL--QALAFQLTEKLS 803 (913)
Q Consensus 755 ~~V~sivskmI~n~el~As~D~~~~~iv~~~~e~trL--Q~LAl~laeKv~ 803 (913)
+.|.-+|=|-++.+=|.+++|+..+.|.|..+.|--| ++++ +|++++.
T Consensus 309 ~eVE~LVMKAlslgLikG~Idqv~~~v~~swvqPRvl~~~qI~-~Mk~rl~ 358 (380)
T KOG2908|consen 309 KEVELLVMKALSLGLIKGSIDQVEGVVYMSWVQPRVLDRSQIV-KMKDRLD 358 (380)
T ss_pred HHHHHHHHHHHhccceeeeecccccEEEEecccccccCHHHHH-hHHHHHH
Confidence 9999999999999999999999999999999888333 3333 3555543
No 11
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=95.26 E-value=0.029 Score=68.33 Aligned_cols=20 Identities=15% Similarity=0.177 Sum_probs=10.1
Q ss_pred ccccCCCCCCCCCCCCCCCC
Q 002522 847 LSYNQGRQGRSGFTGGGGRS 866 (913)
Q Consensus 847 ~~~~~g~~ggg~r~g~gg~~ 866 (913)
+++++|+++||+++++++|+
T Consensus 576 ~~~~~~~~~~~~~~~~~~~~ 595 (629)
T PRK11634 576 RGFGGERREGGRNFSGERRE 595 (629)
T ss_pred CCCCCCCCCCCcCCCCCCCC
Confidence 34455555555555544443
No 12
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=95.24 E-value=0.015 Score=64.69 Aligned_cols=129 Identities=16% Similarity=0.237 Sum_probs=89.6
Q ss_pred cchhchHHHHHHHHhhccccccCCCcchhhHHHH------HHHHhhcCCHHHHHHHHhccccccccCChHHHHHHHHHHH
Q 002522 649 KSKVISKTFRRLLEVSERQTFTGPPENVRDHVMA------ATRALTKGDFQKAFDVINSLDVWRLLRNRESVLEMLKAKI 722 (913)
Q Consensus 649 rrr~isK~Frr~Le~~erq~f~GPPEn~rdhV~a------A~kal~~GdWk~~~~~I~sikiW~l~p~~e~v~~mL~~kI 722 (913)
|+|-.-|-|-+.+.+ |+-++--|--.+-.-+.. |.+-| ++|-++|.+-- =|.+-.++.
T Consensus 268 ~rr~~lkdlvkVIqq-E~ysYkDPiteFl~clyvn~DFdgAq~kl-----~eCeeVl~nDf--FLva~l~~F-------- 331 (432)
T KOG2758|consen 268 RRRNRLKDLVKVIQQ-ESYSYKDPITEFLECLYVNYDFDGAQKKL-----RECEEVLVNDF--FLVALLDEF-------- 331 (432)
T ss_pred hhHHHHHHHHHHHHH-hccccCCcHHHHHHHHhhccchHHHHHHH-----HHHHHHHhcch--hHHHHHHHH--------
Confidence 344455666666664 455555554444333322 33333 46777776421 011111211
Q ss_pred HHHhhhhcee-eccccccccCHHHHHhhcCCCccchhHhhhhhhcccccceeeccCCceEEEccCCCChHHHH
Q 002522 723 KEEALRTYLF-TFTSSYDSLSLDQLTKMFDLSEVQTHSIVSKMMINEELHASWDQPTHCIIFHDVEHSRLQAL 794 (913)
Q Consensus 723 qeeaLRtYlf-ty~~~y~slSl~~L~~~F~L~~~~V~sivskmI~n~el~As~D~~~~~iv~~~~e~trLQ~L 794 (913)
.|.-|-+|| ||+++..-||++.||....|+.+.+.++|-.+|.+.-|.|.+|...+.|||....+|--|++
T Consensus 332 -~E~ARl~ifEtfCRIHqcIti~mLA~kLnm~~eeaErwivnlIr~~rl~AkidSklg~Vvmg~~~~s~~qQ~ 403 (432)
T KOG2758|consen 332 -LENARLLIFETFCRIHQCITIDMLADKLNMDPEEAERWIVNLIRTARLDAKIDSKLGHVVMGHPTVSPHQQL 403 (432)
T ss_pred -HHHHHHHHHHHHHHHHHheeHHHHHHHhcCCHHHHHHHHHHHHHHhhhhhhhccccCceeecCCCCCHHHHH
Confidence 467788999 89999999999999999999999999999999999999999999999999987666544443
No 13
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=93.75 E-value=0.018 Score=68.77 Aligned_cols=61 Identities=18% Similarity=0.201 Sum_probs=28.6
Q ss_pred ccCHHHHHHHHHHHhHh-hcchhhhccC----------CCc---cchhchHHHHHHHHhhccccccCCCcchhhHHHHHH
Q 002522 619 HINLELLEAVHLICAML-LEVPNMAANT----------HGA---KSKVISKTFRRLLEVSERQTFTGPPENVRDHVMAAT 684 (913)
Q Consensus 619 HINlELLE~v~lisaML-lEIP~mAa~~----------~d~---rrr~isK~Frr~Le~~erq~f~GPPEn~rdhV~aA~ 684 (913)
-+|+-.+||.-++..=| -..|+-.... .|. ----..|-||--|.+.+| -++.+|-.+.
T Consensus 327 ~l~fs~vEcLL~afh~La~k~p~~~~~lCgyk~vtgQpsd~~~~~~~~~~kdf~~RL~yl~~--------~~q~yikkl~ 398 (556)
T PF05918_consen 327 KLQFSYVECLLYAFHQLARKSPNSLNFLCGYKIVTGQPSDRYGEDDAEKLKDFRERLQYLAR--------GTQAYIKKLK 398 (556)
T ss_dssp ---HHHHHHHHHHHHHHHTT-THHHH---------------------TTTHHHHHHHHHHHH--------HHHHHHHHHH
T ss_pred cccchHhhHHHHHHHHHhhhCcchhhhHhhhcccccccccccccccHHHHHHHHHHHHHHHH--------HHHHHHHHHH
Confidence 46667888875555433 3445432211 010 001225778777777766 3455555555
Q ss_pred HHh
Q 002522 685 RAL 687 (913)
Q Consensus 685 kal 687 (913)
.+|
T Consensus 399 ~~l 401 (556)
T PF05918_consen 399 QAL 401 (556)
T ss_dssp HHH
T ss_pred HHh
Confidence 555
No 14
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=93.66 E-value=0.019 Score=68.56 Aligned_cols=50 Identities=16% Similarity=0.148 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHhcCccchhhhhhhhhhhhcccCCCCCCCCCHHHHHHHHHHHHHHHHHHh
Q 002522 273 EQVEQLTFLTKVAKTPAQKLEILFSLISAQFDVNPGLSGHMPINVWKKCVVNMLIVLDILT 333 (913)
Q Consensus 273 eqi~~L~~L~~iak~~~~~i~il~~lIsa~FD~~~~~~~~M~~~~Wk~~~~~i~~ll~iL~ 333 (913)
+..+-.+.++..+|+....=+.--.+|+-.|=.=|++ .-..|+.+|||.+
T Consensus 20 ~~~~~y~~il~~~kg~~k~K~Laaq~I~kffk~FP~l-----------~~~Ai~a~~DLcE 69 (556)
T PF05918_consen 20 QHEEDYKEILDGVKGSPKEKRLAAQFIPKFFKHFPDL-----------QEEAINAQLDLCE 69 (556)
T ss_dssp GGHHHHHHHHHGGGS-HHHHHHHHHHHHHHHCC-GGG-----------HHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhh-----------HHHHHHHHHHHHh
Confidence 3445555666666653222122244555555544443 2344555666653
No 15
>COG5071 RPN5 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=93.47 E-value=0.16 Score=56.50 Aligned_cols=92 Identities=17% Similarity=0.302 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHhhhhceeeccccccccCHHHHHhhcCCCccchhHhhhhhhcccccceeeccCCceEEEccCCCChHHHH
Q 002522 715 LEMLKAKIKEEALRTYLFTFTSSYDSLSLDQLTKMFDLSEVQTHSIVSKMMINEELHASWDQPTHCIIFHDVEHSRLQAL 794 (913)
Q Consensus 715 ~~mL~~kIqeeaLRtYlfty~~~y~slSl~~L~~~F~L~~~~V~sivskmI~n~el~As~D~~~~~iv~~~~e~trLQ~L 794 (913)
.+-|..+|-|--+|.- +.||++|++..|....++|++.+..-||.|.-++=+.|.+++|++.|-|.+..-+ |++
T Consensus 332 w~DL~krviEHN~RvI----~~yYSrI~~~rl~~lld~~~s~te~~ISdlVN~G~~yaKiNrpa~Ii~FEK~~n~--~~~ 405 (439)
T COG5071 332 WSDLRKRVIEHNIRVI----ANYYSRIHCSRLGVLLDMSPSETEQFISDLVNKGHFYAKINRPAQIISFEKSQNV--QEQ 405 (439)
T ss_pred HHHHHHHHHHhhHhHH----HHHhhhhhHHHHHHHHcCCHHHHHHHHHHHHhcCcEEEEecCccceEEeeccccH--HHH
Confidence 3456666667666653 7899999999999999999999999999999999999999999999999886554 566
Q ss_pred HHHHHHHHhHhhhhhhhh
Q 002522 795 AFQLTEKLSILAESNERA 812 (913)
Q Consensus 795 Al~laeKv~~lve~NEr~ 812 (913)
-..-.+.|..|++.=|++
T Consensus 406 lneW~~NV~ellgklek~ 423 (439)
T COG5071 406 LNEWGSNVTELLGKLEKV 423 (439)
T ss_pred HHHhcccHHHHHHHHHHH
Confidence 666666666666655443
No 16
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=92.66 E-value=0.23 Score=58.56 Aligned_cols=16 Identities=25% Similarity=0.611 Sum_probs=7.6
Q ss_pred CCcCCccccCCCCCCC
Q 002522 842 KWQDNLSYNQGRQGRS 857 (913)
Q Consensus 842 ~~~~~~~~~~g~~ggg 857 (913)
+||++-..--|..|||
T Consensus 865 rWqGGers~sG~sGpG 880 (940)
T KOG4661|consen 865 RWQGGERSHSGSSGPG 880 (940)
T ss_pred cccCCcccccCCCCCc
Confidence 5776533333444443
No 17
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=92.40 E-value=0.37 Score=55.33 Aligned_cols=93 Identities=22% Similarity=0.361 Sum_probs=71.0
Q ss_pred ChHHHHHHHHHHHHHHhhhhceeeccccccccCHHHHHhhcCCCccchhHhhhhhhcccccceeeccCCceEEEccCCCC
Q 002522 710 NRESVLEMLKAKIKEEALRTYLFTFTSSYDSLSLDQLTKMFDLSEVQTHSIVSKMMINEELHASWDQPTHCIIFHDVEHS 789 (913)
Q Consensus 710 ~~e~v~~mL~~kIqeeaLRtYlfty~~~y~slSl~~L~~~F~L~~~~V~sivskmI~n~el~As~D~~~~~iv~~~~e~t 789 (913)
.++.-.+-|..||=|--+|. .+.||+.|++..|++..++|.+....-+|.|+.++-+.|.+|+|++.|.|.++--+
T Consensus 327 ~gek~~~dL~~RIiEHNiRi----iA~yYSrIt~~rl~eLLdl~~ee~E~~LS~lv~t~ti~aKidrpsgII~F~k~K~~ 402 (439)
T KOG1498|consen 327 EGEKRWSDLKLRIIEHNIRI----IAKYYSRITLKRLAELLDLPVEEMEKFLSDLVVTGTIYAKIDRPSGIINFQKVKDS 402 (439)
T ss_pred hhhhHHHHHHHHHHHHHHHH----HHHHHhhccHHHHHHHhCCCHHHHHHHHHHHHhccceEEEecCCCceEEEEecccH
Confidence 34555566667776666554 37889999999999999999999999999999999999999999999999875433
Q ss_pred hHHHHHHHHHHHHhHhhhh
Q 002522 790 RLQALAFQLTEKLSILAES 808 (913)
Q Consensus 790 rLQ~LAl~laeKv~~lve~ 808 (913)
+.++..-+..+..|+..
T Consensus 403 --~~~LneW~~nve~L~~l 419 (439)
T KOG1498|consen 403 --NEILNEWASNVEKLLGL 419 (439)
T ss_pred --HHHHHHHHhhHHHHHHH
Confidence 44444444444444433
No 18
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=92.29 E-value=0.18 Score=61.73 Aligned_cols=6 Identities=33% Similarity=0.772 Sum_probs=2.4
Q ss_pred hhcccc
Q 002522 588 LLAQGI 593 (913)
Q Consensus 588 LLAQG~ 593 (913)
++|.|+
T Consensus 304 v~arGI 309 (629)
T PRK11634 304 VAARGL 309 (629)
T ss_pred hHhcCC
Confidence 334443
No 19
>KOG2044 consensus 5'-3' exonuclease HKE1/RAT1 [Replication, recombination and repair; RNA processing and modification]
Probab=91.80 E-value=0.45 Score=58.41 Aligned_cols=32 Identities=25% Similarity=0.377 Sum_probs=21.0
Q ss_pred hcChhhhhhhHHHHHHHHHhhHHHHHHHHHHhhCCCc
Q 002522 138 KMSSSNAKALNSMKQKLKKNNKQYEDLINKYRENPES 174 (913)
Q Consensus 138 Kms~~nakalntlKQklkK~~k~~e~~i~~yrenPe~ 174 (913)
|||..-|+=|.+-|--- +=+++++++|+.=+.
T Consensus 110 KMNQQRsRRFRaaKeaa-----e~~~e~e~~ree~~~ 141 (931)
T KOG2044|consen 110 KMNQQRSRRFRAAKEAA-----EKEAEIERLREEFEA 141 (931)
T ss_pred hhhHHHHHHHhhhhHHH-----HHHHHHHHHHHHHHh
Confidence 79999999888775442 234556666655443
No 20
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=91.06 E-value=1.8 Score=40.83 Aligned_cols=6 Identities=33% Similarity=0.528 Sum_probs=2.4
Q ss_pred HHHHHH
Q 002522 794 LAFQLT 799 (913)
Q Consensus 794 LAl~la 799 (913)
|++-||
T Consensus 9 L~l~LA 14 (95)
T PF07172_consen 9 LGLLLA 14 (95)
T ss_pred HHHHHH
Confidence 344343
No 21
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=89.67 E-value=0.41 Score=55.81 Aligned_cols=6 Identities=17% Similarity=0.312 Sum_probs=2.9
Q ss_pred ceEEEc
Q 002522 779 HCIIFH 784 (913)
Q Consensus 779 ~~iv~~ 784 (913)
++|.|.
T Consensus 333 gFV~f~ 338 (419)
T KOG0116|consen 333 GFVEFE 338 (419)
T ss_pred EEEEEe
Confidence 355454
No 22
>KOG2044 consensus 5'-3' exonuclease HKE1/RAT1 [Replication, recombination and repair; RNA processing and modification]
Probab=89.46 E-value=0.61 Score=57.33 Aligned_cols=12 Identities=25% Similarity=0.492 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHh
Q 002522 92 FDKINKQLDKVM 103 (913)
Q Consensus 92 Fd~L~K~~~K~~ 103 (913)
||=+.+++..+.
T Consensus 82 FeyiDrlf~mvR 93 (931)
T KOG2044|consen 82 FEYIDRLFSMVR 93 (931)
T ss_pred HHHHHHHHHhcc
Confidence 666666665544
No 23
>PHA00370 III attachment protein
Probab=89.07 E-value=0.8 Score=49.76 Aligned_cols=33 Identities=9% Similarity=0.200 Sum_probs=24.2
Q ss_pred ccchhHhhhhhhcccccceeeccC--CceEEEccC
Q 002522 754 EVQTHSIVSKMMINEELHASWDQP--THCIIFHDV 786 (913)
Q Consensus 754 ~~~V~sivskmI~n~el~As~D~~--~~~iv~~~~ 786 (913)
...+..-++|=+...-+.-.|... ..+++|+..
T Consensus 19 ~~~eE~ClaKP~~~g~~sNv~k~d~~~~Yan~eGC 53 (297)
T PHA00370 19 QTPEEICLAKPPIDGVFNNVWKGDEGGRYANYEGC 53 (297)
T ss_pred CCcHHHHhcCCcccccccceeecCCCceEEEecCe
Confidence 456677788888888888888663 367777653
No 24
>COG5600 Transcription-associated recombination protein [DNA replication, recombination, and repair]
Probab=88.91 E-value=8.9 Score=44.31 Aligned_cols=230 Identities=17% Similarity=0.180 Sum_probs=141.6
Q ss_pred HHHHHHHHHHHHhcCCc---chhhHH------HHHHHHHHhhcCChHHHHHHHHhhhhhhhccCCChh-----hHHHHHH
Q 002522 489 RTMMDMLVSLIYKYGDE---RTKARA------MLCDIYHHALLDEFSTARDLLLMSHLQDNVQQMDVL-----SQILFNR 554 (913)
Q Consensus 489 ~~li~~L~~~Iyk~~~~---r~r~RA------mLc~IYh~ALhd~~~~ARDLlLmShLQe~I~~~Di~-----tQILyNR 554 (913)
..+|.++-+-|-....+ ..|.++ .||.|||.- ++++-+.+++--+.. ++..||+ -+|+||=
T Consensus 150 sr~l~R~Fn~il~dR~p~ln~skk~g~y~iaNlL~~iY~Rl--~~~~l~~n~lka~~~---vs~~Di~~~~~sq~v~f~Y 224 (413)
T COG5600 150 SRLLTRMFNSILNDRSPALNPSKKVGLYYIANLLFQIYLRL--GRFKLCENFLKASKE---VSMPDISEYQKSQVVVFHY 224 (413)
T ss_pred HHHHHHHHHHhcCCcCccCChhhHHHHHHHHHHHHHHHHHh--ccHHHHHHHHHhccc---ccccccchhhhcceeehhh
Confidence 45666666666655554 456666 789999974 677777777754433 6667887 4456654
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHhhhhCCccchhhcccccccccCCCChhhHHHHHHhCCCcccccCHHHHHHHHHHHhH
Q 002522 555 AMAQLGLCAFRVGLVAEGHSCLSELYSGGKVKELLAQGISQSRYHEKTPEQERLERRRQMPYHMHINLELLEAVHLICAM 634 (913)
Q Consensus 555 amvQLGLcAFR~GlI~EAh~~L~ei~~s~R~KELLAQG~~~~r~~ekt~EQEk~ErrRqlPfHMHINlELLE~v~lisaM 634 (913)
=||.|+|-.-+++||.--|++-+.+=+ -| + .|. +.|.+|| |+++++
T Consensus 225 ---YLG~~~l~~en~heA~~~L~~aFl~c~--~l----~--~~n-----------~~rIl~~------------~ipt~L 270 (413)
T COG5600 225 ---YLGIYYLLNENFHEAFLHLNEAFLQCP--WL----I--TRN-----------RKRILPY------------YIPTSL 270 (413)
T ss_pred ---HHHHHHHHHHhHHHHHHHHHHHHHhCh--hh----h--hcc-----------hheehhH------------HhhHHH
Confidence 389999999999999999999876422 22 1 110 1234444 777777
Q ss_pred hhcchhhhccCCCccchhchHHHHHHHHhhccccccCCCcchhhHHHHHHHHhhcCCHHHHHHHHhccccc-------cc
Q 002522 635 LLEVPNMAANTHGAKSKVISKTFRRLLEVSERQTFTGPPENVRDHVMAATRALTKGDFQKAFDVINSLDVW-------RL 707 (913)
Q Consensus 635 LlEIP~mAa~~~d~rrr~isK~Frr~Le~~erq~f~GPPEn~rdhV~aA~kal~~GdWk~~~~~I~sikiW-------~l 707 (913)
|+- +.+ +-+-+|+.+-| .=+ ----.||+..||.+.-..-|..=.-| -.
T Consensus 271 lv~------------~~~---Ptk~~L~r~~~-~s~---------~~~LvkavrsGni~~~~~~l~~ner~~~~~~l~lt 325 (413)
T COG5600 271 LVN------------KFP---PTKDLLERFKR-CSV---------YSPLVKAVRSGNIEDFDLALSRNERKFAKRGLYLT 325 (413)
T ss_pred HhC------------CCC---CchHHHHhccc-cch---------hHHHHHHHHcCCHHHHHHHHHHhHHHHHHcchHHH
Confidence 762 111 11224444432 100 11235778888876544444322212 11
Q ss_pred cCC-hHHHHHHHHHHHHHHhhhhceeeccccccccCHHHHHhhcC-----CCccchhHhhhhhhcccccceeeccCCceE
Q 002522 708 LRN-RESVLEMLKAKIKEEALRTYLFTFTSSYDSLSLDQLTKMFD-----LSEVQTHSIVSKMMINEELHASWDQPTHCI 781 (913)
Q Consensus 708 ~p~-~e~v~~mL~~kIqeeaLRtYlfty~~~y~slSl~~L~~~F~-----L~~~~V~sivskmI~n~el~As~D~~~~~i 781 (913)
|-. .+-|. .+-+.- ++|+++....==.+|+-..+..-. .+...|.+|..-||..+-|.|-+-...++|
T Consensus 326 l~~~~~~V~---~RNL~r---k~w~~~~~qsrlp~sil~~~~qls~~dn~~~~~~VEciL~tlI~~G~lrgYis~s~~~v 399 (413)
T COG5600 326 LLAHYPLVC---FRNLFR---KIWRLHGKQSRLPLSILLIVLQLSAIDNFHSFKEVECILVTLIGLGLLRGYISHSRRTV 399 (413)
T ss_pred HHhhccHHH---HHHHHH---HHHhhccccccCcHHHHHHHHHccCCCcccChHHHHHHHHHHHhhhhhhheecccceEE
Confidence 111 11111 122222 788888877654455555554433 456889999999999999999999999999
Q ss_pred EEccCCC
Q 002522 782 IFHDVEH 788 (913)
Q Consensus 782 v~~~~e~ 788 (913)
||.+.+|
T Consensus 400 V~sk~~p 406 (413)
T COG5600 400 VFSKKDP 406 (413)
T ss_pred EEecCCC
Confidence 9998776
No 25
>KOG1076 consensus Translation initiation factor 3, subunit c (eIF-3c) [Translation, ribosomal structure and biogenesis]
Probab=88.87 E-value=0.2 Score=60.75 Aligned_cols=116 Identities=17% Similarity=0.156 Sum_probs=87.7
Q ss_pred CCceeecccccccHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHhhhhccCCCCHHHHHHHHhHHHHHHHHHh-
Q 002522 53 GQKRVVRSAKDKRFEEMAATVDQMKNAMKINDWVSLQESFDKINKQLDKVMRVTEAEKVPTLYIKALVMLEDFLNQAMA- 131 (913)
Q Consensus 53 e~kRVVkSaKdKr~eEl~~~i~~i~n~~ki~Dw~~i~~~Fd~L~K~~~K~~~~~~~~g~P~~yIk~L~~Led~v~e~~~- 131 (913)
.+..+|.+.+.|-+.+|+..++.+-..+...+|-+..+.| .|+-+..|-++.+. -|.-+|+.-.+-+|.+++...
T Consensus 97 ~e~~~~p~~yik~L~eleD~~Ne~~e~~~~k~~lsknN~k-aL~~lrqk~~k~~~---~~~~~i~~~r~~Pd~~~~~~~e 172 (843)
T KOG1076|consen 97 KENVKVPRFYIKTLVELEDFLNELWDDKEGKKKLSKSNSK-ALNSLRQKLKKYNK---DFEDDIKRYRENPDQENEENPE 172 (843)
T ss_pred hcCCCCchHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhh-hhHHHHHHHHHhhc---cHHHHHHHhccCcccccccccc
Confidence 3588899999999999999999999999999999999999 78888888777653 277778877777777754321
Q ss_pred --chHHHhhcChhhhhhhHHHHHHHHHhhHHHHHHHHHHhhCCCcc
Q 002522 132 --NKEAKKKMSSSNAKALNSMKQKLKKNNKQYEDLINKYRENPESE 175 (913)
Q Consensus 132 --dke~kKKms~~nakalntlKQklkK~~k~~e~~i~~yrenPe~~ 175 (913)
+++.. +...+.++|+..+.+.|-..+-+..++++|.+|+++
T Consensus 173 ~~~~D~d---d~~d~~~~ds~~~~~~~~s~d~e~~~~~~r~~~~e~ 215 (843)
T KOG1076|consen 173 TQDADDD---DSDDSEDWDSTPSSSDKDSEDEEDKMAKLRDDPEED 215 (843)
T ss_pred ccccccc---cccchhhhcCCCcccCCccccchhhHHHhccccccc
Confidence 11111 555677777777777777777777777777655543
No 26
>COG4907 Predicted membrane protein [Function unknown]
Probab=88.15 E-value=0.34 Score=56.30 Aligned_cols=7 Identities=43% Similarity=0.733 Sum_probs=4.3
Q ss_pred hcCCHHH
Q 002522 688 TKGDFQK 694 (913)
Q Consensus 688 ~~GdWk~ 694 (913)
..|.|++
T Consensus 473 ~~grw~~ 479 (595)
T COG4907 473 TAGRWSK 479 (595)
T ss_pred cccccCH
Confidence 5567754
No 27
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=87.06 E-value=9.7 Score=44.60 Aligned_cols=195 Identities=16% Similarity=0.303 Sum_probs=109.6
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHhhhhhhhccCCChhhHHHHHHHHH-------HHHHHHHhcccHHHHHHHHHhhhhC-
Q 002522 511 AMLCDIYHHALLDEFSTARDLLLMSHLQDNVQQMDVLSQILFNRAMA-------QLGLCAFRVGLVAEGHSCLSELYSG- 582 (913)
Q Consensus 511 AmLc~IYh~ALhd~~~~ARDLlLmShLQe~I~~~Di~tQILyNRamv-------QLGLcAFR~GlI~EAh~~L~ei~~s- 582 (913)
++++..==|.|-|+|+.|--.| .++ |++-.-||+|+.. .+|.|-+..+...+|-.+++.|+..
T Consensus 124 SligLlRvh~LLGDY~~Alk~l--~~i-------dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi 194 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVL--ENI-------DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYI 194 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHh--hcc-------CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455588999999998776 443 6666678888765 7999999999999999999998863
Q ss_pred CccchhhcccccccccCCCChhhHHHHHHhCCCcccccCHHHHHHHHHHHhHhhcchhhhccCCCccchhchHHHHHHHH
Q 002522 583 GKVKELLAQGISQSRYHEKTPEQERLERRRQMPYHMHINLELLEAVHLICAMLLEVPNMAANTHGAKSKVISKTFRRLLE 662 (913)
Q Consensus 583 ~R~KELLAQG~~~~r~~ekt~EQEk~ErrRqlPfHMHINlELLE~v~lisaMLlEIP~mAa~~~d~rrr~isK~Frr~Le 662 (913)
.|.| ++ ++.++++++.+-|+ .|=.|.++|+-+ .+.....|. -|+...|..
T Consensus 195 ~r~k----~~-----~~~~~~q~d~i~K~-------------~eqMyaLlAic~---~l~p~~lde---~i~~~lkek-- 244 (404)
T PF10255_consen 195 QRTK----NQ-----YHQRSYQYDQINKK-------------NEQMYALLAICL---SLCPQRLDE---SISSQLKEK-- 244 (404)
T ss_pred HHhh----hh-----hccccchhhHHHhH-------------HHHHHHHHHHHH---HhCCCCCCH---HHHHHHHHH--
Confidence 5655 22 23445556555554 233344444333 111000110 122222211
Q ss_pred hhccccccCCCcchhhHHHHHHHHhhcCCHHHHHHHHh--cccccccc-------C--C--hHH---HHHHHHHHHHHHh
Q 002522 663 VSERQTFTGPPENVRDHVMAATRALTKGDFQKAFDVIN--SLDVWRLL-------R--N--RES---VLEMLKAKIKEEA 726 (913)
Q Consensus 663 ~~erq~f~GPPEn~rdhV~aA~kal~~GdWk~~~~~I~--sikiW~l~-------p--~--~e~---v~~mL~~kIqeea 726 (913)
| -.-...|++||-..=.++.. +.|.=+-. | + .|. -++++.+-|+...
T Consensus 245 -y----------------~ek~~kmq~gd~~~f~elF~~acPKFIsp~~pp~~~~~~~~~~~e~~~~Ql~~Fl~eV~~q~ 307 (404)
T PF10255_consen 245 -Y----------------GEKMEKMQRGDEEAFEELFSFACPKFISPVSPPDYDGPSQNKNKEPYRRQLKLFLDEVKQQQ 307 (404)
T ss_pred -H----------------HHHHHHHHccCHHHHHHHHHhhCCCccCCCCCCCcccccchhhhhHHHHHHHHHHHHHHHhh
Confidence 0 02223466776443333322 12211111 1 1 022 2334444444443
Q ss_pred hhhceeeccccccccCHHHHHhhcCCCccchhHhh
Q 002522 727 LRTYLFTFTSSYDSLSLDQLTKMFDLSEVQTHSIV 761 (913)
Q Consensus 727 LRtYlfty~~~y~slSl~~L~~~F~L~~~~V~siv 761 (913)
.=.-|-+|-.-|++|++++||..-+++++.+++.+
T Consensus 308 ~l~~lRSyLKLYtti~l~KLA~fl~vd~~~lr~~L 342 (404)
T PF10255_consen 308 KLPTLRSYLKLYTTIPLEKLASFLDVDEEELRSQL 342 (404)
T ss_pred hhhHHHHHHHhhcCCCHHHHHHHcCCCHHHHHHHH
Confidence 33333445578999999999999999988665544
No 28
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=86.84 E-value=0.84 Score=53.34 Aligned_cols=7 Identities=29% Similarity=0.420 Sum_probs=2.5
Q ss_pred eeecccc
Q 002522 731 LFTFTSS 737 (913)
Q Consensus 731 lfty~~~ 737 (913)
||.|-.+
T Consensus 331 ~fgFV~f 337 (419)
T KOG0116|consen 331 CFGFVEF 337 (419)
T ss_pred ceEEEEE
Confidence 3333333
No 29
>COG4907 Predicted membrane protein [Function unknown]
Probab=85.06 E-value=0.57 Score=54.51 Aligned_cols=15 Identities=13% Similarity=-0.046 Sum_probs=6.2
Q ss_pred CCCcccccCHHHHHH
Q 002522 613 QMPYHMHINLELLEA 627 (913)
Q Consensus 613 qlPfHMHINlELLE~ 627 (913)
..--||---.-+|=+
T Consensus 419 ~ky~~~~~vatii~a 433 (595)
T COG4907 419 LKYEHIGCVATIIFA 433 (595)
T ss_pred CEEEEehhHHHHHHH
Confidence 333455433344433
No 30
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=85.06 E-value=46 Score=39.20 Aligned_cols=207 Identities=16% Similarity=0.176 Sum_probs=123.4
Q ss_pred HHHH-HHhhcCChHHHHHHHHhhhhhhhccCCChhhHHHHHHHHHHHHHHHHhcccHHHHHHHHHhhhhCCccchhhccc
Q 002522 514 CDIY-HHALLDEFSTARDLLLMSHLQDNVQQMDVLSQILFNRAMAQLGLCAFRVGLVAEGHSCLSELYSGGKVKELLAQG 592 (913)
Q Consensus 514 c~IY-h~ALhd~~~~ARDLlLmShLQe~I~~~Di~tQILyNRamvQLGLcAFR~GlI~EAh~~L~ei~~s~R~KELLAQG 592 (913)
|.+- .+-.++.|.+|-+|.--+---++..+. .+=|=+==||-.---++...+|+.|+.--.- +.-.-+|=|
T Consensus 213 N~LLr~yL~n~lydqa~~lvsK~~~pe~~snn------e~ARY~yY~GrIkaiqldYssA~~~~~qa~r--kapq~~alG 284 (493)
T KOG2581|consen 213 NLLLRNYLHNKLYDQADKLVSKSVYPEAASNN------EWARYLYYLGRIKAIQLDYSSALEYFLQALR--KAPQHAALG 284 (493)
T ss_pred HHHHHHHhhhHHHHHHHHHhhcccCccccccH------HHHHHHHHHhhHHHhhcchhHHHHHHHHHHH--hCcchhhhh
Confidence 4443 344445566777776444333333332 5556666677777777888999888764221 111122333
Q ss_pred ccccccCCCChhhHHHHHHhCCCcccccCHHHHHHHHHHHhHhhcchhhhccCCCccchhchHHHHHHHHhhccccccCC
Q 002522 593 ISQSRYHEKTPEQERLERRRQMPYHMHINLELLEAVHLICAMLLEVPNMAANTHGAKSKVISKTFRRLLEVSERQTFTGP 672 (913)
Q Consensus 593 ~~~~r~~ekt~EQEk~ErrRqlPfHMHINlELLE~v~lisaMLlEIP~mAa~~~d~rrr~isK~Frr~Le~~erq~f~GP 672 (913)
+-+ - ..=|+-++.=+|.|||--.. .-+...|+.|..|
T Consensus 285 f~q-----------------------~----v~k~~ivv~ll~geiPers~--------F~Qp~~~ksL~~Y-------- 321 (493)
T KOG2581|consen 285 FRQ-----------------------Q----VNKLMIVVELLLGEIPERSV--------FRQPGMRKSLRPY-------- 321 (493)
T ss_pred HHH-----------------------H----HHHHHHHHHHHcCCCcchhh--------hcCccHHHHHHHH--------
Confidence 311 1 11244556667788874331 1122223333322
Q ss_pred CcchhhHHHHHHHHhhcCCHHHHHHHHhccccccccCChHHHHHHHHHHHHHHhhhhceeeccccccccCHHHHHhhcCC
Q 002522 673 PENVRDHVMAATRALTKGDFQKAFDVINSLDVWRLLRNRESVLEMLKAKIKEEALRTYLFTFTSSYDSLSLDQLTKMFDL 752 (913)
Q Consensus 673 PEn~rdhV~aA~kal~~GdWk~~~~~I~sikiW~l~p~~e~v~~mL~~kIqeeaLRtYlfty~~~y~slSl~~L~~~F~L 752 (913)
..-++|.+.||.++--+.|...+-- ++.+.. =.|..|+..--++|=|=.-+-.|+.||+..+|....|
T Consensus 322 --------f~Lt~AVr~gdlkkF~~~leq~k~~-f~~D~t---y~LivRLR~NVIkTgIR~ISlsYSRISl~DIA~kL~l 389 (493)
T KOG2581|consen 322 --------FKLTQAVRLGDLKKFNETLEQFKDK-FQADGT---YTLIVRLRHNVIKTGIRKISLSYSRISLQDIAKKLGL 389 (493)
T ss_pred --------HHHHHHHHHhhHHHHHHHHHHHHHH-HhhCCc---chHHHHHHHHHHHHhhhheeeeeeeccHHHHHHHhcC
Confidence 4557889999999988888755411 111111 0233344444444444455666777899999999999
Q ss_pred Cccc-hhHhhhhhhcccccceeeccCCceEEE
Q 002522 753 SEVQ-THSIVSKMMINEELHASWDQPTHCIIF 783 (913)
Q Consensus 753 ~~~~-V~sivskmI~n~el~As~D~~~~~iv~ 783 (913)
+..+ |..||+|-|..+=|-|.+|..++|+.-
T Consensus 390 ~Seed~EyiVakAIRDGvIea~Id~~~g~m~s 421 (493)
T KOG2581|consen 390 NSEEDAEYIVAKAIRDGVIEAKIDHEDGFMQS 421 (493)
T ss_pred CCchhHHHHHHHHHHhccceeeeccccCceeh
Confidence 7666 999999999999999999999887653
No 31
>PF10075 PCI_Csn8: COP9 signalosome, subunit CSN8; InterPro: IPR019280 The photomorphogenic 9 (COP9) signalosome or CSN complex is composed of eight subunits: Cops1/GPS1, Cops2, Cops3, Cops4, Cops5, Cop6, Cops7 (Cops7A or Cops7B) and Cops8. In the complex, Cops8, which is the smallest subunit, probably interacts directly with Cops3, Cops4 and Cops7 (Cops7A or Cops7B). This signalosome is homologous to the lid subcomplex of the 26S proteasome and regulates the ubiquitin-proteasome pathway. It functions as a structural scaffold for subunit-subunit interactions within the complex and is a key regulator of photomorphogenic development [].; PDB: 1RZ4_A.
Probab=82.74 E-value=1.1 Score=44.28 Aligned_cols=79 Identities=23% Similarity=0.439 Sum_probs=50.0
Q ss_pred hHHHHHHHHhhcCCHHHHHHHHhccccccccCChHHHHHHHHHHHHHHhhhhcee-eccccccccCHHHHHhhcCCCccc
Q 002522 678 DHVMAATRALTKGDFQKAFDVINSLDVWRLLRNRESVLEMLKAKIKEEALRTYLF-TFTSSYDSLSLDQLTKMFDLSEVQ 756 (913)
Q Consensus 678 dhV~aA~kal~~GdWk~~~~~I~sikiW~l~p~~e~v~~mL~~kIqeeaLRtYlf-ty~~~y~slSl~~L~~~F~L~~~~ 756 (913)
-+|+.-.++|..|++.+.+..+.+- .|. +.-......| ++++|.+++ .-+..|.+||++.||++.+++++.
T Consensus 42 ~~i~~l~~~L~~~~~~~~~~~~~~~-~~~--~~~~~~v~~~-----~~~iR~~i~~~i~~aY~sIs~~~la~~Lg~~~~e 113 (143)
T PF10075_consen 42 KAIWSLGQALWEGDYSKFWQALRSN-PWS--PDYKPFVPGF-----EDTIRERIAHLISKAYSSISLSDLAEMLGLSEEE 113 (143)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHS-TT-------HHHHTSTTH-----HHHHHHHHHHHHHHH-SEE-HHHHHHHTTS-HHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhc-cch--HHHHHHHHHH-----HHHHHHHHHHHHHHHHhHcCHHHHHHHhCCCHHH
Confidence 4788899999999999888777654 342 1111112233 344444444 347789999999999999999888
Q ss_pred hhHhhhhh
Q 002522 757 THSIVSKM 764 (913)
Q Consensus 757 V~sivskm 764 (913)
+..++.+-
T Consensus 114 l~~~~~~~ 121 (143)
T PF10075_consen 114 LEKFIKSR 121 (143)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHc
Confidence 88887765
No 32
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=81.34 E-value=3.3 Score=48.56 Aligned_cols=10 Identities=30% Similarity=0.241 Sum_probs=3.8
Q ss_pred CCcchhhHHH
Q 002522 672 PPENVRDHVM 681 (913)
Q Consensus 672 PPEn~rdhV~ 681 (913)
+|.+..++|=
T Consensus 322 ~P~~~~~yvq 331 (456)
T PRK10590 322 LPNVPEDYVH 331 (456)
T ss_pred CCCCHHHhhh
Confidence 3333333333
No 33
>PF13324 GCIP: Grap2 and cyclin-D-interacting; PDB: 3AY5_A.
Probab=80.29 E-value=88 Score=34.54 Aligned_cols=49 Identities=22% Similarity=0.200 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHhhcCCC--CChHHHHHHHHHHHHHhcCccchhhhhhhhhhhhc
Q 002522 252 NVNKKFKEVVAARGRKG--TGRFEQVEQLTFLTKVAKTPAQKLEILFSLISAQF 303 (913)
Q Consensus 252 ~v~kkL~eIv~~RGKK~--tDr~eqi~~L~~L~~iak~~~~~i~il~~lIsa~F 303 (913)
.++|++...+..++|.. .+...++..|..|...++.-... .=-|+++.|
T Consensus 199 ~~lk~~~~~i~~~~k~~~~~~~~~~v~~Ld~L~~~~~~i~~~---VDel~~slY 249 (275)
T PF13324_consen 199 AVLKKLLRAITKLLKSEKPSDSPEQVAQLDKLLDLCQEISPS---VDELASSLY 249 (275)
T ss_dssp HHHHHHHHHHHHH---------TT-HHHHHHHHHHHHHHHHH---HHHHHHHHS
T ss_pred HHHHHHHHHHHhcccccccccChhhHHHHHHHHHHHHHhhhH---HHHHHHHhc
Confidence 57777778888888553 34577899999999998763333 223444444
No 34
>KOG3262 consensus H/ACA small nucleolar RNP component GAR1 [Translation, ribosomal structure and biogenesis]
Probab=79.43 E-value=2.8 Score=43.85 Aligned_cols=6 Identities=17% Similarity=0.285 Sum_probs=2.4
Q ss_pred CCCccc
Q 002522 900 GSNRMV 905 (913)
Q Consensus 900 ~~~rmv 905 (913)
.+.+.|
T Consensus 49 pp~evv 54 (215)
T KOG3262|consen 49 PPEEVV 54 (215)
T ss_pred Cchhhh
Confidence 444433
No 35
>COG1512 Beta-propeller domains of methanol dehydrogenase type [General function prediction only]
Probab=74.12 E-value=3.2 Score=46.07 Aligned_cols=62 Identities=21% Similarity=0.198 Sum_probs=31.0
Q ss_pred HHHHHHhH--hhcchhhhc----cCCCccchhchHHHHHHHHhh----cccc----------ccCCCcchhhHHHHHHHH
Q 002522 627 AVHLICAM--LLEVPNMAA----NTHGAKSKVISKTFRRLLEVS----ERQT----------FTGPPENVRDHVMAATRA 686 (913)
Q Consensus 627 ~v~lisaM--LlEIP~mAa----~~~d~rrr~isK~Frr~Le~~----erq~----------f~GPPEn~rdhV~aA~ka 686 (913)
++.+.|+| +...|.-+. +-+| ....+++.=+..|++. +.++ =++ +|++-++.+.=..+
T Consensus 12 ~~~~~~~~~~~~a~~~~~p~~~~~V~D-~t~~Ls~~e~~~Leq~l~~L~~kt~~QiaVv~vpSt~-g~~IE~ya~rlfd~ 89 (271)
T COG1512 12 LLAALALAPLLFAEPIPAPTLSQRVTD-LTGTLSAAERGALEQQLADLEQKTGAQIAVVTVPSTG-GETIEQYATRLFDK 89 (271)
T ss_pred HHHHHHHHHhhhccccCCCcccceeee-ccccCChhhHHHHHHHHHHHHhccCCeEEEEEecCCC-CCCHHHHHHHHHHh
Confidence 45566666 333333332 2234 3456777666666553 2222 234 66766666655555
Q ss_pred hhcC
Q 002522 687 LTKG 690 (913)
Q Consensus 687 l~~G 690 (913)
=.-|
T Consensus 90 W~lG 93 (271)
T COG1512 90 WKLG 93 (271)
T ss_pred cCCC
Confidence 3334
No 36
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=72.11 E-value=26 Score=44.28 Aligned_cols=12 Identities=8% Similarity=0.440 Sum_probs=9.4
Q ss_pred HHHHHHHHHHhh
Q 002522 253 VNKKFKEVVAAR 264 (913)
Q Consensus 253 v~kkL~eIv~~R 264 (913)
+..+|.+|...|
T Consensus 737 lD~~La~~Fk~r 748 (784)
T PF04931_consen 737 LDEQLAAIFKER 748 (784)
T ss_pred HHHHHHHHHHHH
Confidence 467888888888
No 37
>COG1512 Beta-propeller domains of methanol dehydrogenase type [General function prediction only]
Probab=71.95 E-value=3.8 Score=45.52 Aligned_cols=10 Identities=60% Similarity=0.730 Sum_probs=5.2
Q ss_pred HHhcccHHHH
Q 002522 563 AFRVGLVAEG 572 (913)
Q Consensus 563 AFR~GlI~EA 572 (913)
+||.|++..+
T Consensus 140 ~fr~gny~~g 149 (271)
T COG1512 140 AFRDGNYAGG 149 (271)
T ss_pred ccccCcHHHH
Confidence 4555555544
No 38
>PLN03138 Protein TOC75; Provisional
Probab=71.65 E-value=2.7 Score=52.68 Aligned_cols=9 Identities=44% Similarity=0.434 Sum_probs=4.5
Q ss_pred CCcccccCc
Q 002522 901 SNRMVSLNK 909 (913)
Q Consensus 901 ~~rmv~~~~ 909 (913)
..+.|-|++
T Consensus 133 ~~~~~~~~~ 141 (796)
T PLN03138 133 VNITVPLSK 141 (796)
T ss_pred ccceEechh
Confidence 344555554
No 39
>PF03276 Gag_spuma: Spumavirus gag protein; InterPro: IPR004957 The Spumavirus gag protein is a core viral polyprotein that undergoes specific enzymatic cleavages in vivo to yield the mature protein.; GO: 0019028 viral capsid
Probab=69.37 E-value=9.9 Score=45.61 Aligned_cols=111 Identities=21% Similarity=0.353 Sum_probs=58.8
Q ss_pred CCCcccccCHHHHHHHHHHHhHhhcchhhhccCCCccchhchHHHHHHHHhhccccccCCCcchhhHHHHHHH---Hhhc
Q 002522 613 QMPYHMHINLELLEAVHLICAMLLEVPNMAANTHGAKSKVISKTFRRLLEVSERQTFTGPPENVRDHVMAATR---ALTK 689 (913)
Q Consensus 613 qlPfHMHINlELLE~v~lisaMLlEIP~mAa~~~d~rrr~isK~Frr~Le~~erq~f~GPPEn~rdhV~aA~k---al~~ 689 (913)
+|.=|--+.|+-.||+.-.+|.-. +-...|.+ -..|.+=+.. +++ ..+|-|..|+. .|..
T Consensus 313 Ll~g~~GL~L~p~ec~sW~~avaa----L~~RthG~------~plH~L~~vL-~~i------a~~EGv~~A~~lGmmft~ 375 (582)
T PF03276_consen 313 LLGGHLGLALTPNECGSWASAVAA----LYQRTHGS------YPLHQLADVL-RGI------ANQEGVATAYNLGMMFTN 375 (582)
T ss_pred HhcCCCccccCccccccHHHHHHH----HHHHhccc------chHHHHHHHH-HHH------hhhhhHHHHHHhhceeec
Confidence 688899999999999988776322 11111110 0011111110 011 23677888876 4577
Q ss_pred CCHHHHHHHHhccccccccCChHHHHHHHHHHHHHH---hhh--hceeeccccccccCHHHH
Q 002522 690 GDFQKAFDVINSLDVWRLLRNRESVLEMLKAKIKEE---ALR--TYLFTFTSSYDSLSLDQL 746 (913)
Q Consensus 690 GdWk~~~~~I~sikiW~l~p~~e~v~~mL~~kIqee---aLR--tYlfty~~~y~slSl~~L 746 (913)
+||.--+-+|. -|||. ..|-.|+..++-.| +.| +|++--...|+-|-|..+
T Consensus 376 ~n~~LvwGIiR-----~lLPG-QAvVt~~Q~rLDq~~~d~~R~~~f~~~l~~vyeiLGLn~~ 431 (582)
T PF03276_consen 376 QNFDLVWGIIR-----PLLPG-QAVVTAMQQRLDQEPDDQARIENFIQHLNRVYEILGLNAR 431 (582)
T ss_pred CCcchhhhhhh-----ccCCh-HHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHhCcccc
Confidence 88865444443 35665 45556666666433 333 444444555655555444
No 40
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=68.62 E-value=3.3 Score=51.83 Aligned_cols=30 Identities=7% Similarity=0.237 Sum_probs=15.6
Q ss_pred hHHHHHHHHHhc----h--HHHhhcChhhhhhhHHH
Q 002522 121 MLEDFLNQAMAN----K--EAKKKMSSSNAKALNSM 150 (913)
Q Consensus 121 ~Led~v~e~~~d----k--e~kKKms~~nakalntl 150 (913)
.+||-+...... + .+....++.+-+++.|+
T Consensus 1321 ~~~d~~sdvh~~r~k~p~fSSFRTf~a~dYs~iaTi 1356 (1516)
T KOG1832|consen 1321 NIEDVMSDVHTRRVKHPLFSSFRTFDAIDYSDIATI 1356 (1516)
T ss_pred hhhhhhhhhcccccccchhhhhccccccccccceee
Confidence 566666544331 1 22345566666666655
No 41
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=68.47 E-value=34 Score=39.70 Aligned_cols=169 Identities=24% Similarity=0.368 Sum_probs=104.0
Q ss_pred hHHHHHHHHHHHHHHHHhcccHHHHHHHHHhhhhCCccchhhcccccccccCCCChhhHHHHHHhCCCcc--cccCHHHH
Q 002522 548 SQILFNRAMAQLGLCAFRVGLVAEGHSCLSELYSGGKVKELLAQGISQSRYHEKTPEQERLERRRQMPYH--MHINLELL 625 (913)
Q Consensus 548 tQILyNRamvQLGLcAFR~GlI~EAh~~L~ei~~s~R~KELLAQG~~~~r~~ekt~EQEk~ErrRqlPfH--MHINlELL 625 (913)
+|-+||-+|-=+||=-|- |++.++-+=+. +|-| .||-+|--
T Consensus 183 L~Y~yYgg~iciglk~fe------------------~Al~~~e~~v~-------------------~Pa~~vs~~hlEaY 225 (422)
T KOG2582|consen 183 LLYLYYGGMICIGLKRFE------------------RALYLLEICVT-------------------TPAMAVSHIHLEAY 225 (422)
T ss_pred HHHHHhcceeeeccccHH------------------HHHHHHHHHHh-------------------cchhHHHHHHHHHH
Confidence 567788888777776553 34444444332 3443 36666655
Q ss_pred HHHHHHHhHhhc-----chhhhccCCCccchhchHHHHHHHHhhccccccCCCcchhhHHHHHHHHhhc-CCHHHHHHHH
Q 002522 626 EAVHLICAMLLE-----VPNMAANTHGAKSKVISKTFRRLLEVSERQTFTGPPENVRDHVMAATRALTK-GDFQKAFDVI 699 (913)
Q Consensus 626 E~v~lisaMLlE-----IP~mAa~~~d~rrr~isK~Frr~Le~~erq~f~GPPEn~rdhV~aA~kal~~-GdWk~~~~~I 699 (913)
=- |++-++.+. +|--+...--.-.|..+-.++.+++.| |.+-+...|--|..+...+.+ ++-.-+...
T Consensus 226 kk-ylLvsLI~~GK~~ql~k~ts~~~~r~~K~ms~pY~ef~~~Y----~~~~~~eLr~lVk~~~~rF~kDnnt~l~k~a- 299 (422)
T KOG2582|consen 226 KK-YLLVSLILTGKVFQLPKNTSQNAGRFFKPMSNPYHEFLNVY----LKDSSTELRTLVKKHSERFTKDNNTGLAKQA- 299 (422)
T ss_pred HH-HHHHHhhhcCceeeccccchhhhHHhcccCCchHHHHHHHH----hcCCcHHHHHHHHHHHHHHhhcCcHHHHHHH-
Confidence 33 344444332 222221111111357777888888875 667788888888877665543 333222222
Q ss_pred hccccccccCChHHHHHHHHHHHHHHhhhhceeeccccccccCHHHHHhhcCCC-ccchhHhhhhhhcccccceeeccCC
Q 002522 700 NSLDVWRLLRNRESVLEMLKAKIKEEALRTYLFTFTSSYDSLSLDQLTKMFDLS-EVQTHSIVSKMMINEELHASWDQPT 778 (913)
Q Consensus 700 ~sikiW~l~p~~e~v~~mL~~kIqeeaLRtYlfty~~~y~slSl~~L~~~F~L~-~~~V~sivskmI~n~el~As~D~~~ 778 (913)
|-.|-+++||- ...-|.||||+.+|++-+|. ...|..-|=-||-++++.|++|
T Consensus 300 --------------v~sl~k~nI~r---------ltktF~sLsL~dIA~~vQLa~~qevek~Ilqmie~~~i~a~iN--- 353 (422)
T KOG2582|consen 300 --------------VSSLYKKNIQR---------LTKTFLSLSLSDIASRVQLASAQEVEKYILQMIEDGEIFASIN--- 353 (422)
T ss_pred --------------HHHHHHHHHHH---------HHHHHHHhhHHHHHHHHHhcchHHHHHHHHHHhccCceEEEec---
Confidence 23344555553 23557899999999988874 3567777777999999999999
Q ss_pred ceEEEcc
Q 002522 779 HCIIFHD 785 (913)
Q Consensus 779 ~~iv~~~ 785 (913)
+.|+|+.
T Consensus 354 G~v~f~~ 360 (422)
T KOG2582|consen 354 GMVFFTD 360 (422)
T ss_pred ceEEEec
Confidence 8898863
No 42
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=67.77 E-value=44 Score=42.36 Aligned_cols=42 Identities=14% Similarity=0.148 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhccCCCCHHHHHHHHhHHHHHHHHHhch
Q 002522 87 SLQESFDKINKQLDKVMRVTEAEKVPTLYIKALVMLEDFLNQAMANK 133 (913)
Q Consensus 87 ~i~~~Fd~L~K~~~K~~~~~~~~g~P~~yIk~L~~Led~v~e~~~dk 133 (913)
....-|+-|.-++.= +++ .-|.-++-.|.+|.......+..+
T Consensus 529 ~~~~~f~~L~~~~~l--q~~---~~~~~~~~~l~dl~~c~~~~~~~~ 570 (784)
T PF04931_consen 529 AKAQAFELLLSLVLL--QLY---NGPEEAVDVLDDLQICYEKAFGKK 570 (784)
T ss_pred HHHHHHHHHHHHHHH--HHh---cCChHHHHHHHHHHHHHHHHhccc
Confidence 344557666555422 222 235566777777777666655543
No 43
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=65.32 E-value=24 Score=43.57 Aligned_cols=23 Identities=26% Similarity=0.446 Sum_probs=13.8
Q ss_pred CceeecccccccHHHHHHHHHHHHHhh
Q 002522 54 QKRVVRSAKDKRFEEMAATVDQMKNAM 80 (913)
Q Consensus 54 ~kRVVkSaKdKr~eEl~~~i~~i~n~~ 80 (913)
+.|...|-| -||+..|..-+.+.
T Consensus 68 ~VrLlLSSk----sEmq~vIe~~rkaa 90 (944)
T KOG4307|consen 68 EVRLLLSSK----SEMQSVIEARRKAA 90 (944)
T ss_pred eEEEEeccH----HHHHHHHHHHHHHH
Confidence 445666655 37777776655443
No 44
>KOG3262 consensus H/ACA small nucleolar RNP component GAR1 [Translation, ribosomal structure and biogenesis]
Probab=64.73 E-value=14 Score=38.97 Aligned_cols=7 Identities=71% Similarity=1.412 Sum_probs=5.9
Q ss_pred cCCCcch
Q 002522 670 TGPPENV 676 (913)
Q Consensus 670 ~GPPEn~ 676 (913)
.||||.+
T Consensus 47 ~gpp~ev 53 (215)
T KOG3262|consen 47 QGPPEEV 53 (215)
T ss_pred CCCchhh
Confidence 7999876
No 45
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=61.94 E-value=27 Score=42.22 Aligned_cols=8 Identities=38% Similarity=0.850 Sum_probs=4.0
Q ss_pred cCCCCccC
Q 002522 827 RRDQDYAA 834 (913)
Q Consensus 827 ~~~~d~~~ 834 (913)
+.++||+.
T Consensus 830 pr~Rdwg~ 837 (940)
T KOG4661|consen 830 PRDRDWGS 837 (940)
T ss_pred Cccccccc
Confidence 33456554
No 46
>KOG0526 consensus Nucleosome-binding factor SPN, POB3 subunit [Transcription; Replication, recombination and repair; Chromatin structure and dynamics]
Probab=60.45 E-value=7 Score=46.70 Aligned_cols=10 Identities=40% Similarity=0.634 Sum_probs=4.8
Q ss_pred HHHHHHHhhC
Q 002522 162 EDLINKYREN 171 (913)
Q Consensus 162 e~~i~~yren 171 (913)
+.+|..|..-
T Consensus 436 ~~~~D~~~~~ 445 (615)
T KOG0526|consen 436 EDEIDEYLAT 445 (615)
T ss_pred ccccchHHhh
Confidence 4455555443
No 47
>PF03399 SAC3_GANP: SAC3/GANP/Nin1/mts3/eIF-3 p25 family; InterPro: IPR005062 This large family includes diverse proteins involved in large complexes [, , ]. The alignment contains one highly conserved negatively charged residue and one highly conserved positively charged residue that are probably important for the function of these proteins. The family includes the yeast nuclear export factor Sac3 [], and mammalian GANP/MCM3-associated proteins, which facilitate the nuclear localisation of MCM3, a protein that associates with chromatin in the G1 phase of the cell-cycle. The 26S protease (or 26S proteasome) is responsible for degrading ubiquitin conjugates. It consists of 19S regulatory complexes associated with the ends of 20S proteasomes. The 19S regulatory complex is composed of about 20 different polypeptides and confers ATP-dependence and substrate specificity to the 26S enzyme. The conserved region occurs at the C-terminal of the Nin1-like regulatory subunit [, , ]. This family includes several eukaryotic translation initiation factor 3 subunit 11 (eIF-3 p25) proteins. Eukaryotic initiation factor 3 (eIF3) is a multisubunit complex that is required for binding of mRNA to 40 S ribosomal subunits, stabilisation of ternary complex binding to 40 S subunits, and dissociation of 40 and 60 S subunits [].; PDB: 3T5V_D.
Probab=59.82 E-value=11 Score=38.87 Aligned_cols=67 Identities=22% Similarity=0.347 Sum_probs=48.7
Q ss_pred HHHHHHHHhhcCCHHHHHHHHhccccccccCChHHHHHHHHHHHHHHhhhhceeeccccccccCHHHHHhhcC
Q 002522 679 HVMAATRALTKGDFQKAFDVINSLDVWRLLRNRESVLEMLKAKIKEEALRTYLFTFTSSYDSLSLDQLTKMFD 751 (913)
Q Consensus 679 hV~aA~kal~~GdWk~~~~~I~sikiW~l~p~~e~v~~mL~~kIqeeaLRtYlfty~~~y~slSl~~L~~~F~ 751 (913)
+++.-.+|+..|||.+-++++.+-+...+ ..-+.+.+..+|+..||++..-+|.+ +++++.|++++.
T Consensus 137 ~al~l~~a~~~gny~~ff~l~~~~~~~~l---~~~l~~~~~~~iR~~al~~i~~ay~~---~i~l~~l~~~L~ 203 (204)
T PF03399_consen 137 FALELCRALMEGNYVRFFRLYRSKSAPYL---FACLMERFFNRIRLRALQSISKAYRS---SIPLSFLAELLG 203 (204)
T ss_dssp HHHHHHHHH--TTHHHHHHHHT-TTS-HH---HHHHHGGGHHHHHHHHHHHHHHHS-T----EEHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHhccCCChH---HHHHHHHHHHHHHHHHHHHHHHHcCC---CCCHHHHHHHcC
Confidence 56666799999999998888844333333 35567778899999999999888877 799999999875
No 48
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=59.66 E-value=7.5 Score=46.50 Aligned_cols=67 Identities=18% Similarity=0.220 Sum_probs=34.7
Q ss_pred CccchhchHHHHHHHHhhccccccCCCcchhhHHHHHHHHhhcCCHHHHHHHHhccccccccCChHHHHHHHHHHHHHHh
Q 002522 647 GAKSKVISKTFRRLLEVSERQTFTGPPENVRDHVMAATRALTKGDFQKAFDVINSLDVWRLLRNRESVLEMLKAKIKEEA 726 (913)
Q Consensus 647 d~rrr~isK~Frr~Le~~erq~f~GPPEn~rdhV~aA~kal~~GdWk~~~~~I~sikiW~l~p~~e~v~~mL~~kIqeea 726 (913)
|...-++|-+|+..++-.-|..+.+|---+-- .-+.+.-| +.. +-..+|+.++=+..|.+++-+-+
T Consensus 401 drQtllFsaTf~~kIe~lard~L~dpVrvVqg-----~vgean~d----ITQ-----~V~V~~s~~~Kl~wl~~~L~~f~ 466 (731)
T KOG0339|consen 401 DRQTLLFSATFKKKIEKLARDILSDPVRVVQG-----EVGEANED----ITQ-----TVSVCPSEEKKLNWLLRHLVEFS 466 (731)
T ss_pred cceEEEeeccchHHHHHHHHHHhcCCeeEEEe-----ehhccccc----hhh-----eeeeccCcHHHHHHHHHHhhhhc
Confidence 43335677777777777776666665432211 11222222 211 23446666666666666665544
Q ss_pred h
Q 002522 727 L 727 (913)
Q Consensus 727 L 727 (913)
=
T Consensus 467 S 467 (731)
T KOG0339|consen 467 S 467 (731)
T ss_pred c
Confidence 3
No 49
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=59.65 E-value=12 Score=26.61 Aligned_cols=27 Identities=22% Similarity=0.427 Sum_probs=24.2
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHhhhh
Q 002522 555 AMAQLGLCAFRVGLVAEGHSCLSELYS 581 (913)
Q Consensus 555 amvQLGLcAFR~GlI~EAh~~L~ei~~ 581 (913)
|+-++|.|.++.|...+|-..+..+..
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 577899999999999999999998764
No 50
>PF12782 Innate_immun: Invertebrate innate immunity transcript family
Probab=59.24 E-value=56 Score=35.10 Aligned_cols=15 Identities=27% Similarity=0.202 Sum_probs=6.5
Q ss_pred HHHHHhHhhhhhhhh
Q 002522 798 LTEKLSILAESNERA 812 (913)
Q Consensus 798 laeKv~~lve~NEr~ 812 (913)
||=.+-.--+-||+-
T Consensus 15 laisaha~rd~ne~r 29 (311)
T PF12782_consen 15 LAISAHAQRDFNERR 29 (311)
T ss_pred HHHHHhhhhhhhhhh
Confidence 333333344555543
No 51
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=58.53 E-value=6.8 Score=44.79 Aligned_cols=50 Identities=18% Similarity=0.471 Sum_probs=46.1
Q ss_pred ccccccCHHHHHhhcCCCccchhHhhhhhhcccccceeeccCCceEEEcc
Q 002522 736 SSYDSLSLDQLTKMFDLSEVQTHSIVSKMMINEELHASWDQPTHCIIFHD 785 (913)
Q Consensus 736 ~~y~slSl~~L~~~F~L~~~~V~sivskmI~n~el~As~D~~~~~iv~~~ 785 (913)
--|+-+-++.+|+.-+||.+.|..=+|+||..--+++++||-.+|++++.
T Consensus 341 EPyS~Vei~hIA~~IGl~~~~VEkKLsqMILDKkf~G~LDQg~g~Liv~~ 390 (411)
T KOG1463|consen 341 EPYSRVEISHIAEVIGLDVPQVEKKLSQMILDKKFYGTLDQGEGCLIVFE 390 (411)
T ss_pred CchhhhhHHHHHHHHCCCcHHHHHHHHHHHHHHHhhcccccCCCeEEEeC
Confidence 35677789999999999999999999999999999999999999998874
No 52
>PF04094 DUF390: Protein of unknown function (DUF390); InterPro: IPR007228 This domain is found in a family of long proteins that are currently found only in rice. They have no known function. However they may be some kind of transposable element. There is a putative gypsy type transposon domain (IPR007321 from INTERPRO) towards the N terminus of the proteins.
Probab=57.40 E-value=21 Score=44.23 Aligned_cols=17 Identities=12% Similarity=0.286 Sum_probs=9.2
Q ss_pred cCCCccchhHhhhhhhc
Q 002522 750 FDLSEVQTHSIVSKMMI 766 (913)
Q Consensus 750 F~L~~~~V~sivskmI~ 766 (913)
.|-.++..+-+|..++.
T Consensus 9 WDW~~ED~K~VvqRVL~ 25 (828)
T PF04094_consen 9 WDWGPEDFKMVVQRVLN 25 (828)
T ss_pred CCCCHHHHHHHHHHHhc
Confidence 44455555556666553
No 53
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=53.60 E-value=15 Score=41.47 Aligned_cols=113 Identities=17% Similarity=0.288 Sum_probs=79.5
Q ss_pred hHHHHHHHHhhccccccCCCcchhhHHHHHHHHhhcCCHHHHHHHHhccccccccCChHHHHHHHHHHHHHHhhhhceee
Q 002522 654 SKTFRRLLEVSERQTFTGPPENVRDHVMAATRALTKGDFQKAFDVINSLDVWRLLRNRESVLEMLKAKIKEEALRTYLFT 733 (913)
Q Consensus 654 sK~Frr~Le~~erq~f~GPPEn~rdhV~aA~kal~~GdWk~~~~~I~sikiW~l~p~~e~v~~mL~~kIqeeaLRtYlft 733 (913)
-+.|-..|.+|+.+.-.- | =+|+|.-+-+.-|..-+. -||
T Consensus 298 L~df~~aL~qY~~el~~D-~-~iRsHl~~LYD~LLe~Nl---------------------------~ki----------- 337 (421)
T COG5159 298 LKDFSDALAQYSDELHQD-S-FIRSHLQYLYDVLLEKNL---------------------------VKI----------- 337 (421)
T ss_pred HhhHHHHHHHhhHHhccC-H-HHHHHHHHHHHHHHHhhh---------------------------hhh-----------
Confidence 478999999998875433 2 469998766655522111 111
Q ss_pred ccccccccCHHHHHhhcCCCccchhHhhhhhhcccccceeeccCCceEEEcc-CCCChHHHHHHHHHHHHhHhhh
Q 002522 734 FTSSYDSLSLDQLTKMFDLSEVQTHSIVSKMMINEELHASWDQPTHCIIFHD-VEHSRLQALAFQLTEKLSILAE 807 (913)
Q Consensus 734 y~~~y~slSl~~L~~~F~L~~~~V~sivskmI~n~el~As~D~~~~~iv~~~-~e~trLQ~LAl~laeKv~~lve 807 (913)
-.-|+-+-++.+|+..+|+-.+|..-+|+||..-=+.+.+||-++|++++. .....-=.-|+...+.+.-.|+
T Consensus 338 -iEPfs~VeishIa~viGldt~qvEgKLsqMILDKifyG~LDqg~gcLivy~ep~qd~tyd~ale~v~~l~~vVd 411 (421)
T COG5159 338 -IEPFSVVEISHIADVIGLDTNQVEGKLSQMILDKIFYGTLDQGDGCLIVYGEPAQDNTYDEALEQVEALDCVVD 411 (421)
T ss_pred -cCcceeeehhHHHHHhcccHHHHHHHHHHHHHHHHHHhhhccCCceEEEeCCccccchHHHHHHHHHHhhhHHH
Confidence 134666789999999999999999999999998888999999999999985 3333333445555554444443
No 54
>PF10961 DUF2763: Protein of unknown function (DUF2763); InterPro: IPR024491 This entry represents an eukaryotic family of selenoproteins. It includes SelK, which seems to play an important role in protecting cells from endoplasmic reticulum stress-induced apoptosis [] and SelG, which may be involved in regulating the redox state of the cell [].
Probab=53.59 E-value=31 Score=32.49 Aligned_cols=10 Identities=0% Similarity=0.301 Sum_probs=4.2
Q ss_pred HHHHHHHhHh
Q 002522 796 FQLTEKLSIL 805 (913)
Q Consensus 796 l~laeKv~~l 805 (913)
..+.+=|..+
T Consensus 26 wgi~~fI~lF 35 (91)
T PF10961_consen 26 WGIINFIVLF 35 (91)
T ss_pred HHHHHHHHHH
Confidence 3444444444
No 55
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=53.58 E-value=11 Score=43.09 Aligned_cols=55 Identities=20% Similarity=0.320 Sum_probs=49.3
Q ss_pred ccccccCHHHHHhhcCCCccchhHhhhhhhcccccceeeccCCceEEEccCCCCh
Q 002522 736 SSYDSLSLDQLTKMFDLSEVQTHSIVSKMMINEELHASWDQPTHCIIFHDVEHSR 790 (913)
Q Consensus 736 ~~y~slSl~~L~~~F~L~~~~V~sivskmI~n~el~As~D~~~~~iv~~~~e~tr 790 (913)
..|-+++|+.+|+-|+.+.+=|..=+++.|.++-|++.+|..++.|-.+|.+---
T Consensus 313 ESYrsl~l~~MA~aFgVSVefiDreL~rFI~~grL~ckIDrVnGVVEtNrpD~KN 367 (393)
T KOG0687|consen 313 ESYRSLTLESMAKAFGVSVEFIDRELGRFIAAGRLHCKIDRVNGVVETNRPDEKN 367 (393)
T ss_pred HHHHHHHHHHHHHHhCchHHHHHhHHHHhhccCceeeeeecccceeecCCccccc
Confidence 4688899999999999999999999999999999999999999999888755433
No 56
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=53.45 E-value=22 Score=25.58 Aligned_cols=27 Identities=19% Similarity=0.245 Sum_probs=22.4
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHhhhh
Q 002522 555 AMAQLGLCAFRVGLVAEGHSCLSELYS 581 (913)
Q Consensus 555 amvQLGLcAFR~GlI~EAh~~L~ei~~ 581 (913)
+.-+||.|.|..|.+.+|..++...+.
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 456899999999999999999987653
No 57
>PF10961 DUF2763: Protein of unknown function (DUF2763); InterPro: IPR024491 This entry represents an eukaryotic family of selenoproteins. It includes SelK, which seems to play an important role in protecting cells from endoplasmic reticulum stress-induced apoptosis [] and SelG, which may be involved in regulating the redox state of the cell [].
Probab=53.41 E-value=29 Score=32.68 Aligned_cols=6 Identities=33% Similarity=0.218 Sum_probs=2.4
Q ss_pred CChHHH
Q 002522 788 HSRLQA 793 (913)
Q Consensus 788 ~trLQ~ 793 (913)
|=||+.
T Consensus 15 pWrls~ 20 (91)
T PF10961_consen 15 PWRLSR 20 (91)
T ss_pred CccHHH
Confidence 334443
No 58
>PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif. FeoC acts as a [Fe-S] dependent transcriptional repressor []. ; PDB: 1XN7_A 2K02_A.
Probab=51.92 E-value=5.2 Score=34.94 Aligned_cols=40 Identities=13% Similarity=0.204 Sum_probs=31.3
Q ss_pred cccccCHHHHHhhcCCCccchhHhhhhhhcccccceeecc
Q 002522 737 SYDSLSLDQLTKMFDLSEVQTHSIVSKMMINEELHASWDQ 776 (913)
Q Consensus 737 ~y~slSl~~L~~~F~L~~~~V~sivskmI~n~el~As~D~ 776 (913)
.-..+|+.+||..|+++.+.|..++..||..+.|...-+.
T Consensus 11 ~~~~~S~~eLa~~~~~s~~~ve~mL~~l~~kG~I~~~~~~ 50 (69)
T PF09012_consen 11 ERGRVSLAELAREFGISPEAVEAMLEQLIRKGYIRKVDMS 50 (69)
T ss_dssp HS-SEEHHHHHHHTT--HHHHHHHHHHHHCCTSCEEEEEE
T ss_pred HcCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEecCC
Confidence 3456799999999999999999999999999888654443
No 59
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=51.71 E-value=26 Score=42.73 Aligned_cols=26 Identities=23% Similarity=0.212 Sum_probs=17.9
Q ss_pred CCCcchhhHHHHHHHHhhcCCHHHHH
Q 002522 671 GPPENVRDHVMAATRALTKGDFQKAF 696 (913)
Q Consensus 671 GPPEn~rdhV~aA~kal~~GdWk~~~ 696 (913)
++|.+..++|--+-++-..|..-.|+
T Consensus 333 d~P~s~~~yvqRiGRaGR~G~~G~ai 358 (572)
T PRK04537 333 DLPFDAEDYVHRIGRTARLGEEGDAI 358 (572)
T ss_pred CCCCCHHHHhhhhcccccCCCCceEE
Confidence 56777777777777777777655443
No 60
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=51.70 E-value=37 Score=39.93 Aligned_cols=122 Identities=17% Similarity=0.364 Sum_probs=87.0
Q ss_pred hHHHHHHHHhhccccccCCCcchhhHHHHHHHHhhcCCHHHHHHHHhcccccccc-CChHHHHHHHHHHHHHHhhhhcee
Q 002522 654 SKTFRRLLEVSERQTFTGPPENVRDHVMAATRALTKGDFQKAFDVINSLDVWRLL-RNRESVLEMLKAKIKEEALRTYLF 732 (913)
Q Consensus 654 sK~Frr~Le~~erq~f~GPPEn~rdhV~aA~kal~~GdWk~~~~~I~sikiW~l~-p~~e~v~~mL~~kIqeeaLRtYlf 732 (913)
+-+|+..||.. | .+|+-|-. --.+.|..|.+++.+++===|+ +--..-...|-.+|..-+|--|
T Consensus 295 n~~Fk~flel~--------P-qlr~il~~----fy~sky~~cl~~L~~~k~~llLD~yLaphVd~Ly~~IR~r~llqy-- 359 (466)
T KOG0686|consen 295 NESFKLFLELE--------P-QLREILFK----FYSSKYASCLELLREIKPRLLLDMYLAPHVDNLYSLIRNRALLQY-- 359 (466)
T ss_pred chhhhhHHhcC--------h-HHHHHHHH----HhhhhHHHHHHHHHHhccceeechhcchhHHHHHHHHHHhhHHHh--
Confidence 36788888753 2 34555432 2357899999999988732222 1111122345556666666555
Q ss_pred eccccccccCHHHHHhhcCCCccchhHhhhhhhcccccceeeccCCceEEEcc--CCCChHH
Q 002522 733 TFTSSYDSLSLDQLTKMFDLSEVQTHSIVSKMMINEELHASWDQPTHCIIFHD--VEHSRLQ 792 (913)
Q Consensus 733 ty~~~y~slSl~~L~~~F~L~~~~V~sivskmI~n~el~As~D~~~~~iv~~~--~e~trLQ 792 (913)
-+-|.|+-++++|.-|..+.....+-+-.+|..+-|.|.+|+-.+++.+.. .|++-++
T Consensus 360 --~~py~s~~m~~mA~af~~sv~~le~~l~~LI~~~~i~~rIDs~~ki~~~~~~~~en~~fe 419 (466)
T KOG0686|consen 360 --LSPYSSADMSKMAEAFNTSVAILESELLELILEGKISGRIDSHNKILYARDADSENATFE 419 (466)
T ss_pred --cCccccchHHHHHHHhcccHHHHHHHHHHHHHccchheeeccccceeeecccccccchhh
Confidence 466788899999999999999999999999999999999999998888753 5666554
No 61
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=51.57 E-value=22 Score=43.56 Aligned_cols=16 Identities=13% Similarity=0.216 Sum_probs=11.2
Q ss_pred ccccccCHHHHHhhcC
Q 002522 736 SSYDSLSLDQLTKMFD 751 (913)
Q Consensus 736 ~~y~slSl~~L~~~F~ 751 (913)
..-.+++-+.|.+.|+
T Consensus 240 NL~~~~tee~L~~~F~ 255 (578)
T TIGR01648 240 NLMTTTTEEIIEKSFS 255 (578)
T ss_pred CCCCCCCHHHHHHHHH
Confidence 3445678888888885
No 62
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=50.72 E-value=3.7e+02 Score=29.45 Aligned_cols=74 Identities=15% Similarity=0.158 Sum_probs=50.0
Q ss_pred cchhhHHHHHHHHHHhhcCChHHHHHHHHhhhhhhhccCCChhhHHHHHHHHHHHHHHHHhcccHHHHHHHHHhhhh
Q 002522 505 ERTKARAMLCDIYHHALLDEFSTARDLLLMSHLQDNVQQMDVLSQILFNRAMAQLGLCAFRVGLVAEGHSCLSELYS 581 (913)
Q Consensus 505 ~r~r~RAmLc~IYh~ALhd~~~~ARDLlLmShLQe~I~~~Di~tQILyNRamvQLGLcAFR~GlI~EAh~~L~ei~~ 581 (913)
...-...++--...++..++|.+|.+++- ........ ...++.=.++.....+||-+..|.+..|..+|.+.++
T Consensus 151 ~~~a~~~~~~~A~l~~~l~~y~~A~~~~e-~~~~~~l~--~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~ 224 (282)
T PF14938_consen 151 PHSAAECLLKAADLYARLGRYEEAIEIYE-EVAKKCLE--NNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCS 224 (282)
T ss_dssp HHHHHHHHHHHHHHHHHTT-HHHHHHHHH-HHHHTCCC--HCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGT
T ss_pred hhhHHHHHHHHHHHHHHhCCHHHHHHHHH-HHHHHhhc--ccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 33344444455566778889999998872 11211111 1235666888899999999999999999999999864
No 63
>PF09756 DDRGK: DDRGK domain; InterPro: IPR019153 This is a family of proteins of approximately 300 residues. They contain a highly conserved DDRGK motif. The function is unknown. ; PDB: 1WI9_A.
Probab=50.45 E-value=12 Score=39.60 Aligned_cols=50 Identities=16% Similarity=0.238 Sum_probs=34.6
Q ss_pred cccCHHHHHhhcCCCccchhHhhhhhhcccccceeeccCCceEEEccCCC
Q 002522 739 DSLSLDQLTKMFDLSEVQTHSIVSKMMINEELHASWDQPTHCIIFHDVEH 788 (913)
Q Consensus 739 ~slSl~~L~~~F~L~~~~V~sivskmI~n~el~As~D~~~~~iv~~~~e~ 788 (913)
--+.|+.||..|+|.-..|..-|..+...+-|.+.+|...++|.+...|.
T Consensus 112 Kvv~ledla~~f~l~t~~~i~ri~~L~~~g~ltGv~DdrGkfIyIs~eE~ 161 (188)
T PF09756_consen 112 KVVNLEDLAAEFGLRTQDVINRIQELEAEGRLTGVIDDRGKFIYISEEEM 161 (188)
T ss_dssp SEE-HHHHHHHH-S-HHHHHHHHHHHHHHSSS-EEE-TT--EEE------
T ss_pred ceeeHHHHHHHcCCCHHHHHHHHHHHHHCCCceeeEcCCCCeEEecHHHH
Confidence 34689999999999999999999999999999999999999999876554
No 64
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=49.72 E-value=3.2e+02 Score=30.45 Aligned_cols=153 Identities=17% Similarity=0.234 Sum_probs=78.7
Q ss_pred hhcCChHHHHHHHHhhhhhhhccCCChh-hHHHHHHHHHHHHHHHHhcccHHHHHHHHHhhhhCCc----cchhhccccc
Q 002522 520 ALLDEFSTARDLLLMSHLQDNVQQMDVL-SQILFNRAMAQLGLCAFRVGLVAEGHSCLSELYSGGK----VKELLAQGIS 594 (913)
Q Consensus 520 ALhd~~~~ARDLlLmShLQe~I~~~Di~-tQILyNRamvQLGLcAFR~GlI~EAh~~L~ei~~s~R----~KELLAQG~~ 594 (913)
...++|.+|..++- ..+...+.+ .+.. .+...||.+.++.|.+.+|..++........ +...|++-..
T Consensus 80 ~~~g~~~~A~~~~~-----~~l~~~~~~~~~~~--~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~ 152 (389)
T PRK11788 80 RRRGEVDRAIRIHQ-----NLLSRPDLTREQRL--LALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQ 152 (389)
T ss_pred HHcCcHHHHHHHHH-----HHhcCCCCCHHHHH--HHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHH
Confidence 45788888887542 112222211 1111 4678999999999999999999998865211 1222333322
Q ss_pred ccccCCCChhhHHHHHH--hCCCcccccCHHHHHHHHHHHhHhhcchhhhccCCCccchhchHHHHHHHHhhccccccCC
Q 002522 595 QSRYHEKTPEQERLERR--RQMPYHMHINLELLEAVHLICAMLLEVPNMAANTHGAKSKVISKTFRRLLEVSERQTFTGP 672 (913)
Q Consensus 595 ~~r~~ekt~EQEk~Err--RqlPfHMHINlELLE~v~lisaMLlEIP~mAa~~~d~rrr~isK~Frr~Le~~erq~f~GP 672 (913)
.. .+..+....=++ ..-|-+-+ ..+....+....++++ .. +..--.+.|++.++. .
T Consensus 153 ~~---g~~~~A~~~~~~~~~~~~~~~~--~~~~~~~~~la~~~~~-----~~----~~~~A~~~~~~al~~--------~ 210 (389)
T PRK11788 153 QE---KDWQKAIDVAERLEKLGGDSLR--VEIAHFYCELAQQALA-----RG----DLDAARALLKKALAA--------D 210 (389)
T ss_pred Hh---chHHHHHHHHHHHHHhcCCcch--HHHHHHHHHHHHHHHh-----CC----CHHHHHHHHHHHHhH--------C
Confidence 11 111111111111 11232211 1111110111111111 11 122344667777664 3
Q ss_pred CcchhhHHHHHHHHhhcCCHHHHHHHHhc
Q 002522 673 PENVRDHVMAATRALTKGDFQKAFDVINS 701 (913)
Q Consensus 673 PEn~rdhV~aA~kal~~GdWk~~~~~I~s 701 (913)
|.+..-+++.|.-.++.|+|.+|.+++..
T Consensus 211 p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 239 (389)
T PRK11788 211 PQCVRASILLGDLALAQGDYAAAIEALER 239 (389)
T ss_pred cCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 55667777888888899999999998875
No 65
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=47.08 E-value=1.5e+02 Score=23.79 Aligned_cols=61 Identities=18% Similarity=0.223 Sum_probs=39.1
Q ss_pred hHHHHHHHHHHhhcCChHHHHHHHHhhhhhhhccCCChhhHHHHHHHHHHHHHHHHhcccHHHHHHHHHhhhh
Q 002522 509 ARAMLCDIYHHALLDEFSTARDLLLMSHLQDNVQQMDVLSQILFNRAMAQLGLCAFRVGLVAEGHSCLSELYS 581 (913)
Q Consensus 509 ~RAmLc~IYh~ALhd~~~~ARDLlLmShLQe~I~~~Di~tQILyNRamvQLGLcAFR~GlI~EAh~~L~ei~~ 581 (913)
....+..+|.. .++|.+|.+++...- +- ...+. .+...+|.|.+..|...+|..++.....
T Consensus 36 ~~~~~~~~~~~--~~~~~~a~~~~~~~~-~~--~~~~~-------~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 36 AYYNLAAAYYK--LGKYEEALEDYEKAL-EL--DPDNA-------KAYYNLGLAYYKLGKYEEALEAYEKALE 96 (100)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHH-hC--CCcch-------hHHHHHHHHHHHHHhHHHHHHHHHHHHc
Confidence 33444444443 488999988765431 11 11111 5667888999999999999888877643
No 66
>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [].
Probab=46.29 E-value=75 Score=40.79 Aligned_cols=12 Identities=33% Similarity=0.559 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHH
Q 002522 88 LQESFDKINKQL 99 (913)
Q Consensus 88 i~~~Fd~L~K~~ 99 (913)
|-.+|..|..++
T Consensus 214 LD~~~~~l~~~l 225 (840)
T PF04147_consen 214 LDEDFKDLMSLL 225 (840)
T ss_pred HHHhHHHHHHHH
Confidence 335566666666
No 67
>PF02650 HTH_WhiA: WhiA C-terminal HTH domain; InterPro: IPR023054 This domain is found at the C terminus of the sporulation regulator WhiA. It is predicted to form a DNA binding helix-turn-helix structure []. ; PDB: 3HYI_A.
Probab=44.98 E-value=72 Score=29.68 Aligned_cols=69 Identities=19% Similarity=0.306 Sum_probs=45.2
Q ss_pred chhhHHHHHHHHhhcCCHHHHHHHHhccccccccCChHHHHHHHHHHHHHHhhhhceeeccccccccCHHHHHhhc--CC
Q 002522 675 NVRDHVMAATRALTKGDFQKAFDVINSLDVWRLLRNRESVLEMLKAKIKEEALRTYLFTFTSSYDSLSLDQLTKMF--DL 752 (913)
Q Consensus 675 n~rdhV~aA~kal~~GdWk~~~~~I~sikiW~l~p~~e~v~~mL~~kIqeeaLRtYlfty~~~y~slSl~~L~~~F--~L 752 (913)
|..-.|-||.+.+ .++++|..-..++.||+ ..++...-|++ |-.+||..|++++ .+
T Consensus 11 N~~Kt~~Aa~~qi------~~I~~i~~~~~~~~l~~--~l~~~a~lRl~--------------~Pd~SL~EL~~~~~~~i 68 (85)
T PF02650_consen 11 NLKKTVKAAVKQI------EAIEFIEENNGLDKLPE--KLREFAELRLE--------------NPDASLKELGELLEPPI 68 (85)
T ss_dssp HHHHHHHHHHHHH------HHHHHHHHHT-GGGS-H--HHHHHHHHHHH---------------TTS-HHHHHHTT--T-
T ss_pred HHHHHHHHHHHHH------HHHHHHHHhcccccCCH--HHHHHHHHHHH--------------CccccHHHHHHHHcCcC
Confidence 3444566666666 67888887778888874 44555555554 6778999999999 78
Q ss_pred CccchhHhhhhhh
Q 002522 753 SEVQTHSIVSKMM 765 (913)
Q Consensus 753 ~~~~V~sivskmI 765 (913)
+++.|..-+.|+.
T Consensus 69 SKSgvnhrlrKl~ 81 (85)
T PF02650_consen 69 SKSGVNHRLRKLK 81 (85)
T ss_dssp -HHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHH
Confidence 8888888777764
No 68
>PF04285 DUF444: Protein of unknown function (DUF444); InterPro: IPR006698 This entry is represented by Thermus phage phiYS40, Orf56. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches [].
Probab=44.89 E-value=36 Score=40.21 Aligned_cols=30 Identities=10% Similarity=0.155 Sum_probs=14.3
Q ss_pred CChHHHHHH-HHHHHHhHhhhhhhhhHhhhcC
Q 002522 788 HSRLQALAF-QLTEKLSILAESNERAMESRTG 818 (913)
Q Consensus 788 ~trLQ~LAl-~laeKv~~lve~NEr~~~~k~g 818 (913)
+-|++..+. ++-+.|..+|-. +.+++...|
T Consensus 19 rqRf~ervr~~Ik~~v~d~V~~-~sIi~~~~~ 49 (421)
T PF04285_consen 19 RQRFLERVRGAIKKAVPDAVSE-RSIIDSDGG 49 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc-cceeecCCC
Confidence 344444433 344445555543 666665543
No 69
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=44.38 E-value=34 Score=39.29 Aligned_cols=24 Identities=13% Similarity=0.048 Sum_probs=16.0
Q ss_pred CCCcccccCHHHHHHHHHHHhHhhcc
Q 002522 613 QMPYHMHINLELLEAVHLICAMLLEV 638 (913)
Q Consensus 613 qlPfHMHINlELLE~v~lisaMLlEI 638 (913)
-||+ +++-+.|.-+|-.|.=+.+|
T Consensus 114 nLp~--~~te~~L~~lF~~~G~V~~v 137 (346)
T TIGR01659 114 YLPQ--DMTDRELYALFRTIGPINTC 137 (346)
T ss_pred CCCC--CCCHHHHHHHHHhcCCEEEE
Confidence 3787 56788887777776644444
No 70
>PF05268 GP38: Phage tail fibre adhesin Gp38; InterPro: IPR007932 This entry is represented by Bacteriophage T2, Gp38. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family contains several Gp38 proteins from T-even-like phages. Gp38, together with a second phage protein, Gp57, catalyses the organisation of Gp37 but is absent from the phage particle. Gp37 is responsible for receptor recognition [].
Probab=41.57 E-value=49 Score=35.90 Aligned_cols=20 Identities=10% Similarity=0.170 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHhhhhceeec
Q 002522 715 LEMLKAKIKEEALRTYLFTF 734 (913)
Q Consensus 715 ~~mL~~kIqeeaLRtYlfty 734 (913)
++.|..++++..--.-.||-
T Consensus 60 ~~~~~~~~~~~GsaPiV~~I 79 (260)
T PF05268_consen 60 GQWFRDRCFEAGSAPIVFNI 79 (260)
T ss_pred hhHHHHHHHHcCCCCEEEEe
Confidence 34555666666555555543
No 71
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=41.48 E-value=4.2e+02 Score=32.18 Aligned_cols=160 Identities=18% Similarity=0.102 Sum_probs=89.5
Q ss_pred hhHHHHHHHHHHhhcCChHHHHHHHHhhhhhhhccCCChhhHHHHHHHHHHHHHHHHhcccHHHHHHHHHhhhhCCc---
Q 002522 508 KARAMLCDIYHHALLDEFSTARDLLLMSHLQDNVQQMDVLSQILFNRAMAQLGLCAFRVGLVAEGHSCLSELYSGGK--- 584 (913)
Q Consensus 508 r~RAmLc~IYh~ALhd~~~~ARDLlLmShLQe~I~~~Di~tQILyNRamvQLGLcAFR~GlI~EAh~~L~ei~~s~R--- 584 (913)
.+.+.+-....+.-.|+|.+|...+-..- +-... ++ .+...||.+.++.|.+.+|..+|......+-
T Consensus 21 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~-~~~p~--~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 90 (899)
T TIGR02917 21 SPESLIEAAKSYLQKNKYKAAIIQLKNAL-QKDPN--DA-------EARFLLGKIYLALGDYAAAEKELRKALSLGYPKN 90 (899)
T ss_pred CHHHHHHHHHHHHHcCChHhHHHHHHHHH-HhCCC--CH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChh
Confidence 66777777777778899999988775442 22111 22 3455799999999999999999998765321
Q ss_pred -cchhhcccccccccCCCChhhHHHHHHhCCC-cccccCHHHHHHHHHHHhHhhcchhhhccCCCccchhchHHHHHHHH
Q 002522 585 -VKELLAQGISQSRYHEKTPEQERLERRRQMP-YHMHINLELLEAVHLICAMLLEVPNMAANTHGAKSKVISKTFRRLLE 662 (913)
Q Consensus 585 -~KELLAQG~~~~r~~ekt~EQEk~ErrRqlP-fHMHINlELLE~v~lisaMLlEIP~mAa~~~d~rrr~isK~Frr~Le 662 (913)
..-++|+-...... + ++.++.-...+ -+ .....++.++..-.+. ....|...++
T Consensus 91 ~~~~~~a~~~~~~g~----~-~~a~~~~~~~~~~~---~~~~~~~~~~~~~~~~----------------~~~~~~~A~~ 146 (899)
T TIGR02917 91 QVLPLLARAYLLQGK----F-QQVLDELPGKTLLD---DEGAAELLALRGLAYL----------------GLGQLELAQK 146 (899)
T ss_pred hhHHHHHHHHHHCCC----H-HHHHHhhcccccCC---chhhHHHHHHHHHHHH----------------HcCCHHHHHH
Confidence 12222332211100 0 01111100000 00 0111112122111111 1223566777
Q ss_pred hhccccccCCCcchhhHHHHHHHHhhcCCHHHHHHHHhcc
Q 002522 663 VSERQTFTGPPENVRDHVMAATRALTKGDFQKAFDVINSL 702 (913)
Q Consensus 663 ~~erq~f~GPPEn~rdhV~aA~kal~~GdWk~~~~~I~si 702 (913)
.+++-.-. .|.+..-++..|.-.+..|+|.+|.+++..+
T Consensus 147 ~~~~a~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 185 (899)
T TIGR02917 147 SYEQALAI-DPRSLYAKLGLAQLALAENRFDEARALIDEV 185 (899)
T ss_pred HHHHHHhc-CCCChhhHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 77654433 4566666777788888999999999999753
No 72
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=40.91 E-value=19 Score=42.34 Aligned_cols=10 Identities=20% Similarity=0.438 Sum_probs=5.3
Q ss_pred HHHhhHHHHH
Q 002522 154 LKKNNKQYED 163 (913)
Q Consensus 154 lkK~~k~~e~ 163 (913)
|||.-++-|+
T Consensus 38 IRkLgeEaEE 47 (458)
T PF10446_consen 38 IRKLGEEAEE 47 (458)
T ss_pred HhhhhHHHHH
Confidence 4566555443
No 73
>PTZ00473 Plasmodium Vir superfamily; Provisional
Probab=40.86 E-value=79 Score=37.09 Aligned_cols=13 Identities=46% Similarity=0.478 Sum_probs=6.7
Q ss_pred CCCCCcccccCcC
Q 002522 898 MDGSNRMVSLNKG 910 (913)
Q Consensus 898 ~d~~~rmv~~~~~ 910 (913)
.||+++|-+-..|
T Consensus 394 f~~ss~~s~~~~~ 406 (420)
T PTZ00473 394 FDGSSRGSSDSFG 406 (420)
T ss_pred cCCcccCcccccC
Confidence 3566665544443
No 74
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=40.30 E-value=46 Score=28.20 Aligned_cols=51 Identities=24% Similarity=0.365 Sum_probs=33.9
Q ss_pred hhHHHHHH-HHhhcCCHHHHHHHHhcc-ccccccCChHHHHHHHHHHHHHHhh
Q 002522 677 RDHVMAAT-RALTKGDFQKAFDVINSL-DVWRLLRNRESVLEMLKAKIKEEAL 727 (913)
Q Consensus 677 rdhV~aA~-kal~~GdWk~~~~~I~si-kiW~l~p~~e~v~~mL~~kIqeeaL 727 (913)
||.+...+ =....|||.+|..++..+ ++=-.-+....+++++..+|+.++|
T Consensus 1 Rd~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~~i~kdgl 53 (53)
T PF14853_consen 1 RDCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIEDKIQKDGL 53 (53)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHTTT
T ss_pred ChhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhccCC
Confidence 44444433 345889999999999853 3333333456788899999998876
No 75
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=40.06 E-value=1.6e+02 Score=36.14 Aligned_cols=93 Identities=19% Similarity=0.376 Sum_probs=73.6
Q ss_pred cccHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHhhhhccCCCCHHHHHHHHhHHHHHHHHHhchHHHhhcCh-
Q 002522 63 DKRFEEMAATVDQMKNAMKINDWVSLQESFDKINKQLDKVMRVTEAEKVPTLYIKALVMLEDFLNQAMANKEAKKKMSS- 141 (913)
Q Consensus 63 dKr~eEl~~~i~~i~n~~ki~Dw~~i~~~Fd~L~K~~~K~~~~~~~~g~P~~yIk~L~~Led~v~e~~~dke~kKKms~- 141 (913)
+++++++..-..++..-...+|+....+-.++|...+......++ -||.+|.+|=..+++-|++. +.+-++|-.
T Consensus 171 e~~l~~~e~~f~~f~~l~~~Gd~~~A~e~l~~l~~~~~~l~~~~~--~iP~l~~~~~~~~P~ql~el---~~gy~~m~~~ 245 (569)
T PRK04778 171 EKQLENLEEEFSQFVELTESGDYVEAREILDQLEEELAALEQIME--EIPELLKELQTELPDQLQEL---KAGYRELVEE 245 (569)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhhHHHHHH---HHHHHHHHHc
Confidence 678899999999999999999999999999999998888877765 79999999999999999886 333444432
Q ss_pred -------hhhhhhHHHHHHHHHhhHH
Q 002522 142 -------SNAKALNSMKQKLKKNNKQ 160 (913)
Q Consensus 142 -------~nakalntlKQklkK~~k~ 160 (913)
.-.+.++.|+.+|+.....
T Consensus 246 gy~~~~~~i~~~i~~l~~~i~~~~~~ 271 (569)
T PRK04778 246 GYHLDHLDIEKEIQDLKEQIDENLAL 271 (569)
T ss_pred CCCCCCCChHHHHHHHHHHHHHHHHH
Confidence 2366777777777665433
No 76
>PF08784 RPA_C: Replication protein A C terminal; InterPro: IPR014892 This protein corresponds to the C-terminal of the single stranded DNA binding protein RPA (replication protein A). RPA is involved in many DNA metabolic pathways including DNA replication, DNA repair, recombination, cell cycle and DNA damage checkpoints. ; PDB: 1QUQ_C 2PQA_C 3KDF_B 2Z6K_B 2PI2_B 1L1O_E 1DPU_A 1Z1D_A.
Probab=39.29 E-value=18 Score=33.75 Aligned_cols=37 Identities=11% Similarity=0.266 Sum_probs=34.0
Q ss_pred ccCHHHHHhhcCCCccchhHhhhhhhcccccceeecc
Q 002522 740 SLSLDQLTKMFDLSEVQTHSIVSKMMINEELHASWDQ 776 (913)
Q Consensus 740 slSl~~L~~~F~L~~~~V~sivskmI~n~el~As~D~ 776 (913)
-++++.|++.+.+++++|..+|..|+..+.|...+|+
T Consensus 65 Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsTiDd 101 (102)
T PF08784_consen 65 GVHVDEIAQQLGMSENEVRKALDFLSNEGHIYSTIDD 101 (102)
T ss_dssp TEEHHHHHHHSTS-HHHHHHHHHHHHHTTSEEESSST
T ss_pred cccHHHHHHHhCcCHHHHHHHHHHHHhCCeEecccCC
Confidence 5899999999999999999999999999999998886
No 77
>KOG3910 consensus Helix loop helix transcription factor [Transcription]
Probab=37.77 E-value=69 Score=38.41 Aligned_cols=57 Identities=7% Similarity=0.126 Sum_probs=37.8
Q ss_pred HHHHHHhhhcccHHHHHHHHHHHHHHHHHHhhhhccCCCCHHHHHHHHhHHHHHHHH
Q 002522 73 VDQMKNAMKINDWVSLQESFDKINKQLDKVMRVTEAEKVPTLYIKALVMLEDFLNQA 129 (913)
Q Consensus 73 i~~i~n~~ki~Dw~~i~~~Fd~L~K~~~K~~~~~~~~g~P~~yIk~L~~Led~v~e~ 129 (913)
.+..+.-+.+.|..+..+|.-.||.+.-|+-+---+-+|=..-|..|..||+-|.|-
T Consensus 529 aNNARERlRVRDINeAfKELGRMCqlHlkSeKpQTKLgILhqAVsVIlsLEQQVRER 585 (632)
T KOG3910|consen 529 ANNARERLRVRDINEAFKELGRMCQLHLKSEKPQTKLGILHQAVSVILSLEQQVRER 585 (632)
T ss_pred hhhhhhheehhhHHHHHHHHHHHHHHhhcccCcchhhhHHHHHHHHHHHHHHHHHHc
Confidence 345556667888777766666666665554331113467777888999999998764
No 78
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=37.51 E-value=65 Score=38.58 Aligned_cols=22 Identities=36% Similarity=0.545 Sum_probs=9.7
Q ss_pred CCcEEEechHHHHHHHhhHHHH
Q 002522 358 NGTIRVWGNLVAFVERIDVEFF 379 (913)
Q Consensus 358 ~~~~~v~Gsl~sfvERLDdEf~ 379 (913)
+++|+++|--.+--++==.||+
T Consensus 103 d~vVRLRGLPfscte~dI~~FF 124 (510)
T KOG4211|consen 103 DGVVRLRGLPFSCTEEDIVEFF 124 (510)
T ss_pred CceEEecCCCccCcHHHHHHHh
Confidence 3455555544443333333333
No 79
>PF04545 Sigma70_r4: Sigma-70, region 4; InterPro: IPR007630 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors is involved in binding to the -35 promoter element via a helix-turn-helix motif []. Due to the way Pfam works, the threshold has been set artificially high to prevent overlaps with other helix-turn-helix families. Therefore there are many false negatives.; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2P7V_B 3IYD_F 1TLH_B 1KU7_A 1RIO_H 3N97_A 1KU3_A 1RP3_C 1SC5_A 1NR3_A ....
Probab=37.51 E-value=23 Score=28.74 Aligned_cols=28 Identities=14% Similarity=0.508 Sum_probs=25.0
Q ss_pred ccccCHHHHHhhcCCCccchhHhhhhhh
Q 002522 738 YDSLSLDQLTKMFDLSEVQTHSIVSKMM 765 (913)
Q Consensus 738 y~slSl~~L~~~F~L~~~~V~sivskmI 765 (913)
|..+|+..+|+.++++..+|+.+..+.|
T Consensus 18 ~~~~t~~eIa~~lg~s~~~V~~~~~~al 45 (50)
T PF04545_consen 18 FEGLTLEEIAERLGISRSTVRRILKRAL 45 (50)
T ss_dssp TST-SHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHCCcHHHHHHHHHHHH
Confidence 8899999999999999999999988765
No 80
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=37.23 E-value=3.5e+02 Score=25.26 Aligned_cols=29 Identities=24% Similarity=0.366 Sum_probs=22.3
Q ss_pred CCcchhhHHHHHHHHhhcCCHHHHHHHHh
Q 002522 672 PPENVRDHVMAATRALTKGDFQKAFDVIN 700 (913)
Q Consensus 672 PPEn~rdhV~aA~kal~~GdWk~~~~~I~ 700 (913)
.|++..-+...|.-.+..|+|.+|..++.
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 109 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALD 109 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 36677777777777788888888888775
No 81
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=37.06 E-value=40 Score=39.87 Aligned_cols=8 Identities=25% Similarity=0.368 Sum_probs=3.4
Q ss_pred hHHHHHHH
Q 002522 654 SKTFRRLL 661 (913)
Q Consensus 654 sK~Frr~L 661 (913)
-|.|++++
T Consensus 404 EKf~rk~C 411 (458)
T PF10446_consen 404 EKFWRKHC 411 (458)
T ss_pred HHHHHHHH
Confidence 34444444
No 82
>PF13412 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 1I1G_B 2IA0_B 3I4P_A 2GQQ_A 2L4A_A 2CFX_B 2DBB_B 2EFO_A 2EFQ_A 2PN6_A ....
Probab=36.98 E-value=23 Score=28.41 Aligned_cols=29 Identities=10% Similarity=0.221 Sum_probs=24.5
Q ss_pred ccCHHHHHhhcCCCccchhHhhhhhhccc
Q 002522 740 SLSLDQLTKMFDLSEVQTHSIVSKMMINE 768 (913)
Q Consensus 740 slSl~~L~~~F~L~~~~V~sivskmI~n~ 768 (913)
.+|...||+.++++..+|..++.+|+..+
T Consensus 17 ~~t~~ela~~~~is~~tv~~~l~~L~~~g 45 (48)
T PF13412_consen 17 RITQKELAEKLGISRSTVNRYLKKLEEKG 45 (48)
T ss_dssp TS-HHHHHHHHTS-HHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHCc
Confidence 47999999999999999999999998654
No 83
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=36.23 E-value=78 Score=37.95 Aligned_cols=12 Identities=17% Similarity=0.432 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHH
Q 002522 318 WKKCVVNMLIVL 329 (913)
Q Consensus 318 Wk~~~~~i~~ll 329 (913)
|..+.++|..+|
T Consensus 20 wsat~~ei~~Ff 31 (510)
T KOG4211|consen 20 WSATEKEILDFF 31 (510)
T ss_pred ccccHHHHHHHH
Confidence 444444444443
No 84
>KOG3293 consensus Small nuclear ribonucleoprotein (snRNP) [RNA processing and modification]
Probab=34.56 E-value=53 Score=32.51 Aligned_cols=7 Identities=14% Similarity=0.349 Sum_probs=3.1
Q ss_pred HHHHHhH
Q 002522 798 LTEKLSI 804 (913)
Q Consensus 798 laeKv~~ 804 (913)
+.|+|..
T Consensus 75 iid~vke 81 (134)
T KOG3293|consen 75 IIDKVKE 81 (134)
T ss_pred HHHHHHH
Confidence 4444443
No 85
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=34.46 E-value=1.4e+02 Score=37.44 Aligned_cols=15 Identities=27% Similarity=0.432 Sum_probs=8.8
Q ss_pred HHHHHhHhhhhhhhh
Q 002522 798 LTEKLSILAESNERA 812 (913)
Q Consensus 798 laeKv~~lve~NEr~ 812 (913)
..|++..+-+-||++
T Consensus 709 ~~ee~a~~~~~~~~a 723 (944)
T KOG4307|consen 709 MNEEAALQHEVAEKA 723 (944)
T ss_pred cchhHHHHHHhhhhc
Confidence 455555566666664
No 86
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=33.81 E-value=1.3e+02 Score=24.16 Aligned_cols=51 Identities=12% Similarity=0.120 Sum_probs=35.8
Q ss_pred hcCChHHHHHHHHhhhhhhhccCCChhhHHHHHHHHHHHHHHHHhcccHHHHHHHHHhhhh
Q 002522 521 LLDEFSTARDLLLMSHLQDNVQQMDVLSQILFNRAMAQLGLCAFRVGLVAEGHSCLSELYS 581 (913)
Q Consensus 521 Lhd~~~~ARDLlLmShLQe~I~~~Di~tQILyNRamvQLGLcAFR~GlI~EAh~~L~ei~~ 581 (913)
-.++|.+|.+.+... +....... .+...+|.|.++.|.+.+|..++...+.
T Consensus 12 ~~~~~~~A~~~~~~~-----~~~~~~~~-----~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 62 (100)
T cd00189 12 KLGDYDEALEYYEKA-----LELDPDNA-----DAYYNLAAAYYKLGKYEEALEDYEKALE 62 (100)
T ss_pred HHhcHHHHHHHHHHH-----HhcCCccH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 378899998876433 22111111 5566789999999999999999988653
No 87
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=33.45 E-value=4.7e+02 Score=25.62 Aligned_cols=61 Identities=15% Similarity=0.107 Sum_probs=36.6
Q ss_pred hHHHHHHHHHHhhcCChHHHHHHHHhhhhhhhccCCChhhHHHHHHHHHHHHHHHHhcccHHHHHHHHHhhhh
Q 002522 509 ARAMLCDIYHHALLDEFSTARDLLLMSHLQDNVQQMDVLSQILFNRAMAQLGLCAFRVGLVAEGHSCLSELYS 581 (913)
Q Consensus 509 ~RAmLc~IYh~ALhd~~~~ARDLlLmShLQe~I~~~Di~tQILyNRamvQLGLcAFR~GlI~EAh~~L~ei~~ 581 (913)
+...|..+|. ..++|.+|.+++-... ....-.. .+...+|.|.+..|.+.+|..++.....
T Consensus 67 ~~~~la~~~~--~~~~~~~A~~~~~~al-----~~~~~~~-----~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 127 (234)
T TIGR02521 67 AYLALALYYQ--QLGELEKAEDSFRRAL-----TLNPNNG-----DVLNNYGTFLCQQGKYEQAMQQFEQAIE 127 (234)
T ss_pred HHHHHHHHHH--HcCCHHHHHHHHHHHH-----hhCCCCH-----HHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 3334444443 3478888887764331 1111111 2445578888888999998888888764
No 88
>PF02724 CDC45: CDC45-like protein; InterPro: IPR003874 CDC45 is an essential gene required for initiation of DNA replication in Saccharomyces cerevisiae (cell division control protein 45), forming a complex with MCM5/CDC46. Homologs of CDC45 have been identified in human [], mouse and the smut fungus, Melampsora spp., (tsd2 protein) among others.; GO: 0006270 DNA-dependent DNA replication initiation
Probab=33.07 E-value=39 Score=41.80 Aligned_cols=20 Identities=30% Similarity=0.293 Sum_probs=15.8
Q ss_pred ccCHHHHHHHHHHHhHhhcch
Q 002522 619 HINLELLEAVHLICAMLLEVP 639 (913)
Q Consensus 619 HINlELLE~v~lisaMLlEIP 639 (913)
+-.+--.+|||.+.|+| |+|
T Consensus 396 ~~~lSA~D~v~al~ALL-E~~ 415 (622)
T PF02724_consen 396 RGKLSASDVVYALTALL-EVG 415 (622)
T ss_pred CCceeHHHHHHHHHHHh-cCC
Confidence 35556889999999977 777
No 89
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=33.06 E-value=63 Score=37.14 Aligned_cols=9 Identities=44% Similarity=0.685 Sum_probs=3.8
Q ss_pred CHHHHHhhc
Q 002522 742 SLDQLTKMF 750 (913)
Q Consensus 742 Sl~~L~~~F 750 (913)
+-+.|.+.|
T Consensus 206 tee~L~~~F 214 (346)
T TIGR01659 206 TDDQLDTIF 214 (346)
T ss_pred cHHHHHHHH
Confidence 334444444
No 90
>PRK09637 RNA polymerase sigma factor SigZ; Provisional
Probab=33.00 E-value=1.4e+02 Score=30.58 Aligned_cols=103 Identities=12% Similarity=0.174 Sum_probs=60.2
Q ss_pred hhchHHHHHHHHhhccccccCCCcchhhHHHHHHHHhhcCCHHHHHHHHhcccccccc------CC--h-H----HHHHH
Q 002522 651 KVISKTFRRLLEVSERQTFTGPPENVRDHVMAATRALTKGDFQKAFDVINSLDVWRLL------RN--R-E----SVLEM 717 (913)
Q Consensus 651 r~isK~Frr~Le~~erq~f~GPPEn~rdhV~aA~kal~~GdWk~~~~~I~sikiW~l~------p~--~-e----~v~~m 717 (913)
-+++-.|-+++.... .|- +|++++-.+...++- .|.+++..-+.+..+ +. . . +....
T Consensus 30 Di~QEvflkl~~~~~--~~~-~~~~~~~wL~~i~~n-------~~~d~~Rk~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 99 (181)
T PRK09637 30 DLLQEVLIKTHSNLH--SLK-DGSSIKSWLYQIANN-------TIIDFYRKKNRSEELPDDLLFEDEEREENAKKELAPC 99 (181)
T ss_pred HHHHHHHHHHHHhHH--Hhc-cccchHHHHHHHHHH-------HHHHHHHhccccCCcchhhhccCCChhHHHHHHHHHH
Confidence 477888888877654 343 567888888777663 344444433322211 11 1 1 11112
Q ss_pred HH---HHHHHHhhhhceeeccccccccCHHHHHhhcCCCccchhHhhhhhhc
Q 002522 718 LK---AKIKEEALRTYLFTFTSSYDSLSLDQLTKMFDLSEVQTHSIVSKMMI 766 (913)
Q Consensus 718 L~---~kIqeeaLRtYlfty~~~y~slSl~~L~~~F~L~~~~V~sivskmI~ 766 (913)
|. .++-+.--..+. -.+|..+|++.+|++++++..+|.+.+.+...
T Consensus 100 l~~~l~~L~~~~r~i~~---l~~~~g~~~~EIA~~lgis~~tV~~~l~Rar~ 148 (181)
T PRK09637 100 LRPFIDALPEKYAEALR---LTELEGLSQKEIAEKLGLSLSGAKSRVQRGRV 148 (181)
T ss_pred HHHHHHhCCHHHHHHHH---HHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 21 122222222222 24578899999999999999999999887653
No 91
>TIGR02983 SigE-fam_strep RNA polymerase sigma-70 factor, sigma-E family. This group of similar sigma-70 factors includes the sigE factor from Streptomyces coelicolor. The family appears to include a paralagous expansion in the Streptomycetes lineage, while related Actinomycetales have at most two representatives.
Probab=32.70 E-value=1.2e+02 Score=29.96 Aligned_cols=39 Identities=23% Similarity=0.363 Sum_probs=30.3
Q ss_pred cccccCHHHHHhhcCCCccchhHhhhhhhcccccceeeccC
Q 002522 737 SYDSLSLDQLTKMFDLSEVQTHSIVSKMMINEELHASWDQP 777 (913)
Q Consensus 737 ~y~slSl~~L~~~F~L~~~~V~sivskmI~n~el~As~D~~ 777 (913)
++.-+|...+|+++++|..+|.+.+.+... .|...+.+|
T Consensus 123 ~~~g~s~~eIA~~lgis~~tV~~~l~ra~~--~Lr~~l~~~ 161 (162)
T TIGR02983 123 YYEDLSEAQVAEALGISVGTVKSRLSRALA--RLRELLEEP 161 (162)
T ss_pred HHhcCCHHHHHHHhCCCHHHHHHHHHHHHH--HHHHHhcCC
Confidence 477899999999999999999999987654 334444444
No 92
>PF12870 Lumazine_bd: Lumazine-binding domain; InterPro: IPR024267 This entry represents a lumazine-binding domain found in a family of putative lipoproteins from bacteria. Lumazine is a fluorescent accessory protein having 6,7-dimethyl-8-(1'-D-ribityl) lumazine (DMRL) as its authentic chromophore; it modulates the emission of bacterial luciferase to shorter wavelengths with increasing luminous strength.; PDB: 3K7C_C.
Probab=32.67 E-value=33 Score=31.10 Aligned_cols=29 Identities=24% Similarity=0.416 Sum_probs=21.0
Q ss_pred CCcchhhHHHHHHHHhhcCCHHHHHHHHh
Q 002522 672 PPENVRDHVMAATRALTKGDFQKAFDVIN 700 (913)
Q Consensus 672 PPEn~rdhV~aA~kal~~GdWk~~~~~I~ 700 (913)
|..+..+-|-....||..|||++|+.++.
T Consensus 5 ~~~~P~~~v~~f~~al~~gd~~~a~~~~~ 33 (111)
T PF12870_consen 5 SSSTPEEVVKNFFDALKNGDYEKAYAYLS 33 (111)
T ss_dssp ----HHHHHHHHHHHHCTT-HHHHHHTB-
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHhhC
Confidence 45566777888899999999999999998
No 93
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=32.21 E-value=45 Score=40.34 Aligned_cols=22 Identities=23% Similarity=0.401 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHhh
Q 002522 550 ILFNRAMAQLGLCAFRVGLVAEGHSCLSEL 579 (913)
Q Consensus 550 ILyNRamvQLGLcAFR~GlI~EAh~~L~ei 579 (913)
||||- .|+.--+.-|+.+|.+=
T Consensus 405 llFsa--------Tf~~kIe~lard~L~dp 426 (731)
T KOG0339|consen 405 LLFSA--------TFKKKIEKLARDILSDP 426 (731)
T ss_pred EEeec--------cchHHHHHHHHHHhcCC
Confidence 67774 47778888888888874
No 94
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=31.94 E-value=2.5e+02 Score=34.39 Aligned_cols=91 Identities=18% Similarity=0.399 Sum_probs=68.6
Q ss_pred cccHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHhhhhccCCCCHHHHHHHHhHHHHHHHHHhchHHHhhcChh
Q 002522 63 DKRFEEMAATVDQMKNAMKINDWVSLQESFDKINKQLDKVMRVTEAEKVPTLYIKALVMLEDFLNQAMANKEAKKKMSSS 142 (913)
Q Consensus 63 dKr~eEl~~~i~~i~n~~ki~Dw~~i~~~Fd~L~K~~~K~~~~~~~~g~P~~yIk~L~~Led~v~e~~~dke~kKKms~~ 142 (913)
++.++++..-...+.+-+..+|+....+-..+|...+......++ .||.+|..|-..+++-|++. +++-++|-..
T Consensus 167 e~~L~~ie~~F~~f~~lt~~GD~~~A~eil~~l~~~~~~l~~~~e--~IP~l~~~l~~~~P~ql~eL---~~gy~~m~~~ 241 (560)
T PF06160_consen 167 EKQLENIEEEFSEFEELTENGDYLEAREILEKLKEETDELEEIME--DIPKLYKELQKEFPDQLEEL---KEGYREMEEE 241 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH--HhHHHHHHHHHHhHHHHHHH---HHHHHHHHHC
Confidence 577888888888999999999999999999888888888877765 79999999999999999886 3444455332
Q ss_pred --------hhhhhHHHHHHHHHhh
Q 002522 143 --------NAKALNSMKQKLKKNN 158 (913)
Q Consensus 143 --------nakalntlKQklkK~~ 158 (913)
-.+-++.|+.+++...
T Consensus 242 gy~l~~~~i~~~i~~i~~~l~~~~ 265 (560)
T PF06160_consen 242 GYYLEHLDIEEEIEQIEEQLEEAL 265 (560)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHH
Confidence 2344444554444443
No 95
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=31.72 E-value=7.8e+02 Score=31.17 Aligned_cols=132 Identities=14% Similarity=0.121 Sum_probs=74.2
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHhhhhCCc-cch------------------hhcccccccccCCCChhh-HHHHH-HhC
Q 002522 555 AMAQLGLCAFRVGLVAEGHSCLSELYSGGK-VKE------------------LLAQGISQSRYHEKTPEQ-ERLER-RRQ 613 (913)
Q Consensus 555 amvQLGLcAFR~GlI~EAh~~L~ei~~s~R-~KE------------------LLAQG~~~~r~~ekt~EQ-Ek~Er-rRq 613 (913)
+..+|+++-...|.+.+|...|..+....- -.+ ++|+-+. ...+.++. +.+++ ..+
T Consensus 312 ~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~---~~g~~~eA~~~l~~al~~ 388 (765)
T PRK10049 312 ELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAK---YSNDLPQAEMRARELAYN 388 (765)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHh
Confidence 446777777999999999999999886521 111 2222221 11122222 22222 245
Q ss_pred CCcccccCHHHHHHHHHHHhHhhcchhhhccCCCccchhchHHHHHHHHhhccccccCCCcchhhHHHHHHHHhhcCCHH
Q 002522 614 MPYHMHINLELLEAVHLICAMLLEVPNMAANTHGAKSKVISKTFRRLLEVSERQTFTGPPENVRDHVMAATRALTKGDFQ 693 (913)
Q Consensus 614 lPfHMHINlELLE~v~lisaMLlEIP~mAa~~~d~rrr~isK~Frr~Le~~erq~f~GPPEn~rdhV~aA~kal~~GdWk 693 (913)
.|.+. +|+ +..+.++... . +..---+.+++.+.. -|++..=++..|.-+++.|+|.
T Consensus 389 ~P~n~----~l~---~~lA~l~~~~--------g-~~~~A~~~l~~al~l--------~Pd~~~l~~~~a~~al~~~~~~ 444 (765)
T PRK10049 389 APGNQ----GLR---IDYASVLQAR--------G-WPRAAENELKKAEVL--------EPRNINLEVEQAWTALDLQEWR 444 (765)
T ss_pred CCCCH----HHH---HHHHHHHHhc--------C-CHHHHHHHHHHHHhh--------CCCChHHHHHHHHHHHHhCCHH
Confidence 77753 111 2222222211 0 111223344444443 3899888999999999999999
Q ss_pred HHHHHHhccccccccCChHHHH
Q 002522 694 KAFDVINSLDVWRLLRNRESVL 715 (913)
Q Consensus 694 ~~~~~I~sikiW~l~p~~e~v~ 715 (913)
+|..++..+- ...|+...|+
T Consensus 445 ~A~~~~~~ll--~~~Pd~~~~~ 464 (765)
T PRK10049 445 QMDVLTDDVV--AREPQDPGVQ 464 (765)
T ss_pred HHHHHHHHHH--HhCCCCHHHH
Confidence 9999887542 3566665443
No 96
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=31.46 E-value=2.5e+02 Score=27.34 Aligned_cols=77 Identities=16% Similarity=0.014 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHhcCCcchhhHHHHHHHHHHhhcCChHHHHHHHHhhhhhhhccCCChhhHHHHHHHHHHHHHHHHhcccH
Q 002522 490 TMMDMLVSLIYKYGDERTKARAMLCDIYHHALLDEFSTARDLLLMSHLQDNVQQMDVLSQILFNRAMAQLGLCAFRVGLV 569 (913)
Q Consensus 490 ~li~~L~~~Iyk~~~~r~r~RAmLc~IYh~ALhd~~~~ARDLlLmShLQe~I~~~Di~tQILyNRamvQLGLcAFR~GlI 569 (913)
.=+..|...+-+..++.++.-|-|...+-+.-.++|.+|..+|-. +.. .+.. -.+..-+|-+.++.|..
T Consensus 66 ~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~------~~~--~~~~---~~~~~~~Gdi~~~~g~~ 134 (145)
T PF09976_consen 66 EAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQ------IPD--EAFK---ALAAELLGDIYLAQGDY 134 (145)
T ss_pred HHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh------ccC--cchH---HHHHHHHHHHHHHCCCH
Confidence 444556666666667788888888888888899999999988722 222 2222 22344689999999999
Q ss_pred HHHHHHHH
Q 002522 570 AEGHSCLS 577 (913)
Q Consensus 570 ~EAh~~L~ 577 (913)
.+|..+..
T Consensus 135 ~~A~~~y~ 142 (145)
T PF09976_consen 135 DEARAAYQ 142 (145)
T ss_pred HHHHHHHH
Confidence 99987654
No 97
>smart00345 HTH_GNTR helix_turn_helix gluconate operon transcriptional repressor.
Probab=31.13 E-value=41 Score=27.18 Aligned_cols=31 Identities=16% Similarity=0.221 Sum_probs=26.7
Q ss_pred cc-CHHHHHhhcCCCccchhHhhhhhhccccc
Q 002522 740 SL-SLDQLTKMFDLSEVQTHSIVSKMMINEEL 770 (913)
Q Consensus 740 sl-Sl~~L~~~F~L~~~~V~sivskmI~n~el 770 (913)
.+ |..+||+.|+++.++|...+.+|...+-|
T Consensus 19 ~l~s~~~la~~~~vs~~tv~~~l~~L~~~g~i 50 (60)
T smart00345 19 KLPSERELAAQLGVSRTTVREALSRLEAEGLV 50 (60)
T ss_pred cCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCE
Confidence 46 99999999999999999999998765443
No 98
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=30.99 E-value=2.5e+02 Score=29.37 Aligned_cols=66 Identities=14% Similarity=0.088 Sum_probs=41.8
Q ss_pred chhhHHHHHHHHHHhhcCC-hHHHHHHHHhhhhhhhccCCChhhHHHHHHHHHHHHHHHHhcccHHHHHHHHHhhhh
Q 002522 506 RTKARAMLCDIYHHALLDE-FSTARDLLLMSHLQDNVQQMDVLSQILFNRAMAQLGLCAFRVGLVAEGHSCLSELYS 581 (913)
Q Consensus 506 r~r~RAmLc~IYh~ALhd~-~~~ARDLlLmShLQe~I~~~Di~tQILyNRamvQLGLcAFR~GlI~EAh~~L~ei~~ 581 (913)
.......|..++++...+. +.+|+.++--- |+-...+ -+++--||+++|+.|.+.+|..++..++.
T Consensus 106 ~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~a-l~~dP~~---------~~al~~LA~~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 106 NAELYAALATVLYYQAGQHMTPQTREMIDKA-LALDANE---------VTALMLLASDAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred CHHHHHHHHHHHHHhcCCCCcHHHHHHHHHH-HHhCCCC---------hhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3344555555544443332 57888766322 2222222 25677799999999999999999998764
No 99
>PF14276 DUF4363: Domain of unknown function (DUF4363)
Probab=30.55 E-value=93 Score=29.97 Aligned_cols=40 Identities=18% Similarity=0.413 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHhhh
Q 002522 66 FEEMAATVDQMKNAMKINDWVSLQESFDKINKQLDKVMRV 105 (913)
Q Consensus 66 ~eEl~~~i~~i~n~~ki~Dw~~i~~~Fd~L~K~~~K~~~~ 105 (913)
-+.|...+..+..++..+||......+++|.+.-.|..+.
T Consensus 25 ~~~i~~~l~~i~~~i~~~dW~~A~~~~~~l~~~W~k~~~~ 64 (121)
T PF14276_consen 25 TDSIEEQLEQIEEAIENEDWEKAYKETEELEKEWDKNKKR 64 (121)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhchh
Confidence 4678899999999999999999999999999999998764
No 100
>PF13613 HTH_Tnp_4: Helix-turn-helix of DDE superfamily endonuclease
Probab=30.49 E-value=28 Score=28.94 Aligned_cols=26 Identities=19% Similarity=0.341 Sum_probs=23.0
Q ss_pred cCHHHHHhhcCCCccchhHhhhhhhc
Q 002522 741 LSLDQLTKMFDLSEVQTHSIVSKMMI 766 (913)
Q Consensus 741 lSl~~L~~~F~L~~~~V~sivskmI~ 766 (913)
++...||..|++++++|+.|+..++-
T Consensus 20 ~~~~~La~~FgIs~stvsri~~~~~~ 45 (53)
T PF13613_consen 20 LTFQDLAYRFGISQSTVSRIFHEWIP 45 (53)
T ss_pred CcHhHHhhheeecHHHHHHHHHHHHH
Confidence 46789999999999999999998863
No 101
>PF04285 DUF444: Protein of unknown function (DUF444); InterPro: IPR006698 This entry is represented by Thermus phage phiYS40, Orf56. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches [].
Probab=30.36 E-value=66 Score=38.11 Aligned_cols=6 Identities=17% Similarity=0.119 Sum_probs=2.3
Q ss_pred HHHHhH
Q 002522 799 TEKLSI 804 (913)
Q Consensus 799 aeKv~~ 804 (913)
.+++-.
T Consensus 23 ~ervr~ 28 (421)
T PF04285_consen 23 LERVRG 28 (421)
T ss_pred HHHHHH
Confidence 334433
No 102
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=30.33 E-value=2.2e+02 Score=25.52 Aligned_cols=58 Identities=10% Similarity=0.067 Sum_probs=37.0
Q ss_pred HHHHhhcCChHHHHHHHHhhhhhhhccCCChhhHHHHHHHHHHHHHHHHhcccHHHHHHHHHhhh
Q 002522 516 IYHHALLDEFSTARDLLLMSHLQDNVQQMDVLSQILFNRAMAQLGLCAFRVGLVAEGHSCLSELY 580 (913)
Q Consensus 516 IYh~ALhd~~~~ARDLlLmShLQe~I~~~Di~tQILyNRamvQLGLcAFR~GlI~EAh~~L~ei~ 580 (913)
.-.+.-.++|.+|.+++... ++..-.+ .-..++ ...||.|.|+.|...+|..++..+.
T Consensus 9 ~~~~~~~~~~~~A~~~~~~~-~~~~~~~-~~~~~~-----~~~l~~~~~~~~~~~~A~~~~~~~~ 66 (119)
T TIGR02795 9 ALLVLKAGDYADAIQAFQAF-LKKYPKS-TYAPNA-----HYWLGEAYYAQGKYADAAKAFLAVV 66 (119)
T ss_pred HHHHHHcCCHHHHHHHHHHH-HHHCCCc-cccHHH-----HHHHHHHHHhhccHHHHHHHHHHHH
Confidence 33445578888898776333 1111111 011233 3458999999999999999999875
No 103
>TIGR02498 type_III_ssaH type III secretion system protein, SsaH family. This family describes a small protein, always smaller than 100 amino acids, encoded in pathogenicity islands for bacterial type III secretion systems in various strains of Yersinia, Salmonella, and enteropathogenic E. coli, as well as Chromobacterium violaceum and Citrobacter rodentium. Although strictly associated with type III secretion systems, this protein seems not yet to have been characterized as part of the apparatus or as an effector protein.
Probab=29.82 E-value=59 Score=29.98 Aligned_cols=28 Identities=32% Similarity=0.398 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHhh
Q 002522 552 FNRAMAQLGLCAFRVGLVAEGHSCLSEL 579 (913)
Q Consensus 552 yNRamvQLGLcAFR~GlI~EAh~~L~ei 579 (913)
-||-||.-+++|--+|++.|||++|+-+
T Consensus 5 ~~~L~VEaalAavNH~L~~ea~ailnal 32 (79)
T TIGR02498 5 ANKLVVEAALAAVNHSLPKEAHSILNAL 32 (79)
T ss_pred HHHHHHHHHHHHHccCcHHHHHHHHHhc
Confidence 3788999999999999999999999864
No 104
>TIGR02952 Sig70_famx2 RNA polymerase sigma-70 factor, TIGR02952 family. This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building, bidirectional best hits and one-to-a-genome distribution, to represent a conserved family. This family is found in a limited number of Gram-positive bacterial lineages.
Probab=29.46 E-value=2e+02 Score=28.28 Aligned_cols=30 Identities=7% Similarity=0.162 Sum_probs=26.2
Q ss_pred ccccccCHHHHHhhcCCCccchhHhhhhhh
Q 002522 736 SSYDSLSLDQLTKMFDLSEVQTHSIVSKMM 765 (913)
Q Consensus 736 ~~y~slSl~~L~~~F~L~~~~V~sivskmI 765 (913)
.+|.-+|...+|+.+++|.++|.+.+++-.
T Consensus 134 ~~~~g~s~~eIA~~l~is~~tv~~~l~ra~ 163 (170)
T TIGR02952 134 RFGQNLPIAEVARILGKTEGAVKILQFRAI 163 (170)
T ss_pred HHhcCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 357889999999999999999999888654
No 105
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=28.63 E-value=4.1e+02 Score=26.59 Aligned_cols=86 Identities=16% Similarity=0.068 Sum_probs=54.1
Q ss_pred hHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHhhcCChHHHHHHHHhhhhhhhccCCChhhHHHHHHHHHHHHHHHHhcc
Q 002522 488 SRTMMDMLVSLIYKYGDERTKARAMLCDIYHHALLDEFSTARDLLLMSHLQDNVQQMDVLSQILFNRAMAQLGLCAFRVG 567 (913)
Q Consensus 488 ~~~li~~L~~~Iyk~~~~r~r~RAmLc~IYh~ALhd~~~~ARDLlLmShLQe~I~~~Di~tQILyNRamvQLGLcAFR~G 567 (913)
+.++|-.++.-+-.-...-.++.+.++....+-..++|.+|.+++.-+ +.-.....+ ... +...||.|.++.|
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a-l~~~~~~~~-~~~-----~~~~la~~~~~~g 86 (172)
T PRK02603 14 SFTVMADLILKILPINKKAKEAFVYYRDGMSAQADGEYAEALENYEEA-LKLEEDPND-RSY-----ILYNMGIIYASNG 86 (172)
T ss_pred HHHHHHHHHHHHcccccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHHhhccch-HHH-----HHHHHHHHHHHcC
Confidence 345666666544443444445666666666667789999998777533 111111111 112 4467899999999
Q ss_pred cHHHHHHHHHhhh
Q 002522 568 LVAEGHSCLSELY 580 (913)
Q Consensus 568 lI~EAh~~L~ei~ 580 (913)
...+|-.++....
T Consensus 87 ~~~~A~~~~~~al 99 (172)
T PRK02603 87 EHDKALEYYHQAL 99 (172)
T ss_pred CHHHHHHHHHHHH
Confidence 9999998887644
No 106
>smart00419 HTH_CRP helix_turn_helix, cAMP Regulatory protein.
Probab=28.51 E-value=43 Score=26.13 Aligned_cols=32 Identities=6% Similarity=0.231 Sum_probs=27.9
Q ss_pred ccCHHHHHhhcCCCccchhHhhhhhhcccccc
Q 002522 740 SLSLDQLTKMFDLSEVQTHSIVSKMMINEELH 771 (913)
Q Consensus 740 slSl~~L~~~F~L~~~~V~sivskmI~n~el~ 771 (913)
.+|...||++++++.+.|..++.+|...+=|.
T Consensus 8 ~~s~~~la~~l~~s~~tv~~~l~~L~~~g~l~ 39 (48)
T smart00419 8 PLTRQEIAELLGLTRETVSRTLKRLEKEGLIS 39 (48)
T ss_pred ccCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 47899999999999999999999998866553
No 107
>cd00092 HTH_CRP helix_turn_helix, cAMP Regulatory protein C-terminus; DNA binding domain of prokaryotic regulatory proteins belonging to the catabolite activator protein family.
Probab=27.78 E-value=43 Score=28.05 Aligned_cols=33 Identities=6% Similarity=0.125 Sum_probs=28.6
Q ss_pred cccCHHHHHhhcCCCccchhHhhhhhhcccccc
Q 002522 739 DSLSLDQLTKMFDLSEVQTHSIVSKMMINEELH 771 (913)
Q Consensus 739 ~slSl~~L~~~F~L~~~~V~sivskmI~n~el~ 771 (913)
..+|...||++++++.++|..++++|...+=|.
T Consensus 24 ~~~s~~ela~~~g~s~~tv~r~l~~L~~~g~i~ 56 (67)
T cd00092 24 LPLTRQEIADYLGLTRETVSRTLKELEEEGLIS 56 (67)
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 458999999999999999999999998765543
No 108
>smart00420 HTH_DEOR helix_turn_helix, Deoxyribose operon repressor.
Probab=27.32 E-value=45 Score=26.20 Aligned_cols=30 Identities=17% Similarity=0.305 Sum_probs=26.2
Q ss_pred ccCHHHHHhhcCCCccchhHhhhhhhcccc
Q 002522 740 SLSLDQLTKMFDLSEVQTHSIVSKMMINEE 769 (913)
Q Consensus 740 slSl~~L~~~F~L~~~~V~sivskmI~n~e 769 (913)
.+++..||+.|+++..+|...|..|...+-
T Consensus 14 ~~s~~~l~~~l~~s~~tv~~~l~~L~~~g~ 43 (53)
T smart00420 14 KVSVEELAELLGVSEMTIRRDLNKLEEQGL 43 (53)
T ss_pred CcCHHHHHHHHCCCHHHHHHHHHHHHHCCC
Confidence 479999999999999999999999876543
No 109
>PRK12519 RNA polymerase sigma factor; Provisional
Probab=27.25 E-value=2.1e+02 Score=29.09 Aligned_cols=29 Identities=14% Similarity=0.230 Sum_probs=25.9
Q ss_pred cccccCHHHHHhhcCCCccchhHhhhhhh
Q 002522 737 SYDSLSLDQLTKMFDLSEVQTHSIVSKMM 765 (913)
Q Consensus 737 ~y~slSl~~L~~~F~L~~~~V~sivskmI 765 (913)
+|.-+|...+|+.++++.++|.+.+.+.+
T Consensus 154 ~~~g~s~~EIA~~lgis~~tV~~~l~Ra~ 182 (194)
T PRK12519 154 YYEGLSQSEIAKRLGIPLGTVKARARQGL 182 (194)
T ss_pred hhcCCCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 47889999999999999999999988654
No 110
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=26.54 E-value=1e+02 Score=22.82 Aligned_cols=35 Identities=23% Similarity=0.140 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHhhhhCCccchhhc
Q 002522 554 RAMAQLGLCAFRVGLVAEGHSCLSELYSGGKVKELLA 590 (913)
Q Consensus 554 RamvQLGLcAFR~GlI~EAh~~L~ei~~s~R~KELLA 590 (913)
.++..||.+-+..|.+.+|..++.+.... .+.+++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~--~~~~~G 37 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI--RERLLG 37 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH--H-----
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH--HHHHhc
Confidence 46888999999999999999999988753 335544
No 111
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=26.36 E-value=90 Score=20.09 Aligned_cols=26 Identities=19% Similarity=0.250 Sum_probs=21.9
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHhhh
Q 002522 555 AMAQLGLCAFRVGLVAEGHSCLSELY 580 (913)
Q Consensus 555 amvQLGLcAFR~GlI~EAh~~L~ei~ 580 (913)
+...+|.|.+..|...+|-.++....
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~ 28 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKAL 28 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 45678999999999999999987653
No 112
>PRK12532 RNA polymerase sigma factor; Provisional
Probab=26.28 E-value=4.7e+02 Score=26.70 Aligned_cols=30 Identities=20% Similarity=0.316 Sum_probs=26.3
Q ss_pred ccccccCHHHHHhhcCCCccchhHhhhhhh
Q 002522 736 SSYDSLSLDQLTKMFDLSEVQTHSIVSKMM 765 (913)
Q Consensus 736 ~~y~slSl~~L~~~F~L~~~~V~sivskmI 765 (913)
.+|.-+|...+|+++++|..+|.+.+++..
T Consensus 148 ~~~~g~s~~EIA~~lgis~~tVk~~l~Rar 177 (195)
T PRK12532 148 KEILGFSSDEIQQMCGISTSNYHTIMHRAR 177 (195)
T ss_pred HHHhCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 457889999999999999999999988643
No 113
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=26.16 E-value=3.9e+02 Score=24.66 Aligned_cols=19 Identities=37% Similarity=0.592 Sum_probs=14.0
Q ss_pred HHhhHHHHHHHHHHhhCCC
Q 002522 155 KKNNKQYEDLINKYRENPE 173 (913)
Q Consensus 155 kK~~k~~e~~i~~yrenPe 173 (913)
+|.-..||++|..+|...+
T Consensus 56 ~kmK~~YEeEI~rLr~eLe 74 (79)
T PF08581_consen 56 RKMKQQYEEEIARLRRELE 74 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5555679999999886554
No 114
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=25.76 E-value=8e+02 Score=29.94 Aligned_cols=39 Identities=23% Similarity=0.249 Sum_probs=27.5
Q ss_pred hHHHHHHHHhhccccccCCCcchhhHHHHHHHHhhcCCHHHHHHHHh
Q 002522 654 SKTFRRLLEVSERQTFTGPPENVRDHVMAATRALTKGDFQKAFDVIN 700 (913)
Q Consensus 654 sK~Frr~Le~~erq~f~GPPEn~rdhV~aA~kal~~GdWk~~~~~I~ 700 (913)
-..|++.++.+ |.+..-+...+.-.+..|+|.+|.+++.
T Consensus 453 ~~~~~~al~~~--------P~~~~~~~~lg~~~~~~g~~~~A~~~~~ 491 (615)
T TIGR00990 453 MATFRRCKKNF--------PEAPDVYNYYGELLLDQNKFDEAIEKFD 491 (615)
T ss_pred HHHHHHHHHhC--------CCChHHHHHHHHHHHHccCHHHHHHHHH
Confidence 35566666543 5665556666777778999999998875
No 115
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=25.47 E-value=68 Score=26.62 Aligned_cols=51 Identities=25% Similarity=0.314 Sum_probs=34.3
Q ss_pred cCChHHHHHHHHhhhhhhhccCCChhhHHHHHHHHHHHHHHHHhcccHHHHHHHHHhhhhC
Q 002522 522 LDEFSTARDLLLMSHLQDNVQQMDVLSQILFNRAMAQLGLCAFRVGLVAEGHSCLSELYSG 582 (913)
Q Consensus 522 hd~~~~ARDLlLmShLQe~I~~~Di~tQILyNRamvQLGLcAFR~GlI~EAh~~L~ei~~s 582 (913)
.++|.+|..++--- ++..-+ +..+...|+.|.++.|.+.+|..+|..+...
T Consensus 4 ~~~~~~A~~~~~~~-l~~~p~---------~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 4 QGDYDEAIELLEKA-LQRNPD---------NPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp TTHHHHHHHHHHHH-HHHTTT---------SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred ccCHHHHHHHHHHH-HHHCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 46788888665211 222222 3344556999999999999999999987654
No 116
>PF12782 Innate_immun: Invertebrate innate immunity transcript family
Probab=25.38 E-value=1.7e+02 Score=31.64 Aligned_cols=16 Identities=38% Similarity=0.702 Sum_probs=7.5
Q ss_pred CCccCCCCC--CCCCCcC
Q 002522 830 QDYAAGTGA--MGGKWQD 845 (913)
Q Consensus 830 ~d~~~~~~g--g~g~~~~ 845 (913)
..|++..+| .||.+|+
T Consensus 40 ~~~~grpggm~mgg~rqd 57 (311)
T PF12782_consen 40 GRFGGRPGGMQMGGPRQD 57 (311)
T ss_pred CccCCCCCcccCCCcccc
Confidence 344443333 4555565
No 117
>PRK05325 hypothetical protein; Provisional
Probab=25.10 E-value=87 Score=36.92 Aligned_cols=7 Identities=14% Similarity=0.311 Sum_probs=2.8
Q ss_pred hhhHhhh
Q 002522 810 ERAMESR 816 (913)
Q Consensus 810 Er~~~~k 816 (913)
+.+.+..
T Consensus 28 ~sI~~~~ 34 (401)
T PRK05325 28 RSIIDSD 34 (401)
T ss_pred CccccCC
Confidence 4444433
No 118
>PF09570 RE_SinI: SinI restriction endonuclease; InterPro: IPR019070 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This entry includes the restriction endonuclease SinI, which recognises and cleaves the double-stranded sequence G^GWCC. ; GO: 0003677 DNA binding, 0009036 Type II site-specific deoxyribonuclease activity, 0009307 DNA restriction-modification system
Probab=24.87 E-value=1.1e+02 Score=32.84 Aligned_cols=118 Identities=19% Similarity=0.217 Sum_probs=73.9
Q ss_pred ccCHHHHHHHHHHHhHhhcchhhhccCC------CccchhchHHHHHHHHhhccccccCCCcchhhHHHHHHHHhhcCCH
Q 002522 619 HINLELLEAVHLICAMLLEVPNMAANTH------GAKSKVISKTFRRLLEVSERQTFTGPPENVRDHVMAATRALTKGDF 692 (913)
Q Consensus 619 HINlELLE~v~lisaMLlEIP~mAa~~~------d~rrr~isK~Frr~Le~~erq~f~GPPEn~rdhV~aA~kal~~GdW 692 (913)
.|+.+|++..-.+|+||...|....+.- ......|.+.|.+..+- -.+-+-+||-++.|-++.-.--...|==
T Consensus 15 ~~~~sl~~kf~~l~~fls~~pd~~sn~R~k~~~~v~~~e~i~~~a~~Y~~~-r~~r~p~~p~TvpDE~vs~i~~~~~~~s 93 (221)
T PF09570_consen 15 DIEPSLSEKFTELIKFLSDFPDLLSNWRGKKRPSVATEEYIEKLANAYFEG-RSPRKPLPPTTVPDEMVSVIMNASFGYS 93 (221)
T ss_pred ccCHHHHHHHHHHHHHHcCChhhccccccccCCccchHHHHHHHHHHHhcC-ccccCCCCCCCCChHHHHHHHHHHhCCC
Confidence 4899999999999999999999987431 11224577777777666 4566888999999876643322222222
Q ss_pred HHHHHHHhcccccccc-CChHHHHHHHHHHHHHHhhhhc--eeeccccccc
Q 002522 693 QKAFDVINSLDVWRLL-RNRESVLEMLKAKIKEEALRTY--LFTFTSSYDS 740 (913)
Q Consensus 693 k~~~~~I~sikiW~l~-p~~e~v~~mL~~kIqeeaLRtY--lfty~~~y~s 740 (913)
+. -+.-|+.|-.+ ..+|.+.-.|.++-=-+-|+.| +....++|-.
T Consensus 94 ~e---~l~~i~~~HrlsM~aENivG~LLErYL~~~Le~~GW~wC~Gs~vkA 141 (221)
T PF09570_consen 94 QE---DLELIKEGHRLSMAAENIVGALLERYLAEVLEPYGWIWCCGSFVKA 141 (221)
T ss_pred HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCceeeccchhee
Confidence 22 22334456533 4566666666666666667654 3344444433
No 119
>PF12298 Bot1p: Eukaryotic mitochondrial regulator protein ; InterPro: IPR021036 This entry represents Ribosomal protein S35, which localises to the mitochondria in live cells and co-fractionates with purified mitochondrial ribosomes. This group of proteins have a novel function in the control of cell respiration by acting on the mitochondrial protein synthesis machinery and a role in mitochondrial integrity. Observations also indicate that in Schizosaccharomyces pombe (Fission yeast), alterations of mitochondrial function are linked to changes in cell cycle and cell morphology control mechanisms [].
Probab=24.84 E-value=66 Score=33.64 Aligned_cols=40 Identities=13% Similarity=0.259 Sum_probs=34.5
Q ss_pred hHHHHHHHHHHHHHHhhhhceeeccccccccCHHHHHhhcCCCccchhHhhhhh
Q 002522 711 RESVLEMLKAKIKEEALRTYLFTFTSSYDSLSLDQLTKMFDLSEVQTHSIVSKM 764 (913)
Q Consensus 711 ~e~v~~mL~~kIqeeaLRtYlfty~~~y~slSl~~L~~~F~L~~~~V~sivskm 764 (913)
++.+++.+-+++++.++ |+..||..|++....|.+||.=+
T Consensus 18 se~~r~~Iy~~~~~~~~--------------sv~~vS~~ygi~~~RV~AIvrLk 57 (172)
T PF12298_consen 18 SEELREQIYEDVMQDGK--------------SVREVSQKYGIKIQRVEAIVRLK 57 (172)
T ss_pred CHHHHHHHHHHHHhCCC--------------CHHHHHHHhCCCHHHHHHHHHHH
Confidence 57888888888887754 99999999999999999999744
No 120
>cd07649 F-BAR_GAS7 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Growth Arrest Specific protein 7. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Growth Arrest Specific protein 7 (GAS7) is mainly expressed in the brain and is required for neurite outgrowth. It may also play a role in the protection and migration of embryonic stem cells. Treatment-related acute myeloid leukemia (AML) has been reported resulting from mixed-lineage leukemia (MLL)-GAS7 translocations as a complication of primary cancer treatment. GAS7 contains an N-terminal SH3 domain, followed by a WW domain, and a central F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=24.81 E-value=6.1e+02 Score=27.67 Aligned_cols=78 Identities=18% Similarity=0.234 Sum_probs=48.5
Q ss_pred cHHHHHHHHHHHHHHHHHHhhhhccCCCCHHHHHHHHhHHHHHHHHHhchHHHhhcChhhhhhhHHHHHHHHHhhHHHHH
Q 002522 84 DWVSLQESFDKINKQLDKVMRVTEAEKVPTLYIKALVMLEDFLNQAMANKEAKKKMSSSNAKALNSMKQKLKKNNKQYED 163 (913)
Q Consensus 84 Dw~~i~~~Fd~L~K~~~K~~~~~~~~g~P~~yIk~L~~Led~v~e~~~dke~kKKms~~nakalntlKQklkK~~k~~e~ 163 (913)
-+..+.+.|+++.|...+..+... ..=.-|....-++|....+. ..+-+..+.+.+..++.|++|...+|+.
T Consensus 101 ~~k~~e~~~~k~~K~~~~~~~~~~--kaKk~y~~~cke~e~~~~~~------~~~k~~~s~~~~~K~~~K~~Ka~~e~~~ 172 (233)
T cd07649 101 DMKKLDHHIADLRKQLASRYAAVE--KARKALLERQKDLEGKTQQL------EIKLSNKTEEDIKKARRKSTQAGDDLMR 172 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH------HhhcccCCHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777777643322211 11123445555655543321 1123445677888999999999999999
Q ss_pred HHHHHh
Q 002522 164 LINKYR 169 (913)
Q Consensus 164 ~i~~yr 169 (913)
.+++|.
T Consensus 173 ~ve~y~ 178 (233)
T cd07649 173 CVDLYN 178 (233)
T ss_pred HHHHHH
Confidence 999885
No 121
>TIGR01764 excise DNA binding domain, excisionase family. An excisionase, or Xis protein, is a small protein that binds and promotes excisive recombination; it is not enzymatically active. This model represents a number of putative excisionases and related proteins from temperate phage, plasmids, and transposons, as well as DNA binding domains of other proteins, such as a DNA modification methylase. This model identifies mostly small proteins and N-terminal regions of large proteins, but some proteins appear to have two copies. This domain appears similar, in both sequence and predicted secondary structure (PSIPRED) to the MerR family of transcriptional regulators (pfam00376).
Probab=24.73 E-value=83 Score=24.37 Aligned_cols=39 Identities=13% Similarity=0.153 Sum_probs=27.6
Q ss_pred cCHHHHHhhcCCCccchhHhhhhhhcccccceeeccCCceEEEcc
Q 002522 741 LSLDQLTKMFDLSEVQTHSIVSKMMINEELHASWDQPTHCIIFHD 785 (913)
Q Consensus 741 lSl~~L~~~F~L~~~~V~sivskmI~n~el~As~D~~~~~iv~~~ 785 (913)
+|+.+.|++++++..+| .+++.++.|++... .+...|++
T Consensus 2 lt~~e~a~~lgis~~ti----~~~~~~g~i~~~~~--g~~~~~~~ 40 (49)
T TIGR01764 2 LTVEEAAEYLGVSKDTV----YRLIHEGELPAYRV--GRHYRIPR 40 (49)
T ss_pred CCHHHHHHHHCCCHHHH----HHHHHcCCCCeEEe--CCeEEEeH
Confidence 58999999999996555 55566778887643 34555544
No 122
>COG5406 Nucleosome binding factor SPN, SPT16 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics]
Probab=24.73 E-value=93 Score=38.46 Aligned_cols=36 Identities=19% Similarity=0.368 Sum_probs=24.9
Q ss_pred ChhhhhhhHHHHHHHHHh---------hHHHHHHHHHHhhCCCcc
Q 002522 140 SSSNAKALNSMKQKLKKN---------NKQYEDLINKYRENPESE 175 (913)
Q Consensus 140 s~~nakalntlKQklkK~---------~k~~e~~i~~yrenPe~~ 175 (913)
|.---.+|+.|||=|--+ |-.+..-|.-..++|-.|
T Consensus 870 ntvpvesld~lKewLds~di~f~e~~~nlnW~timksi~~DPi~F 914 (1001)
T COG5406 870 NTVPVESLDKLKEWLDSNDILFMETSANLNWNTIMKSIMKDPISF 914 (1001)
T ss_pred ccccHHHHHHHHHHhhhcCceeEeccccccHHHHHHHHhcCcHHH
Confidence 444457888999988665 334566788888888543
No 123
>PRK12537 RNA polymerase sigma factor; Provisional
Probab=24.72 E-value=1.1e+02 Score=31.08 Aligned_cols=29 Identities=7% Similarity=0.093 Sum_probs=26.0
Q ss_pred cccccCHHHHHhhcCCCccchhHhhhhhh
Q 002522 737 SYDSLSLDQLTKMFDLSEVQTHSIVSKMM 765 (913)
Q Consensus 737 ~y~slSl~~L~~~F~L~~~~V~sivskmI 765 (913)
+|..+|.+.+|+.+++|..+|.+.+.+-.
T Consensus 146 ~~~~~s~~eIA~~lgis~~tV~~~l~ra~ 174 (182)
T PRK12537 146 YVDGCSHAEIAQRLGAPLGTVKAWIKRSL 174 (182)
T ss_pred HHcCCCHHHHHHHHCCChhhHHHHHHHHH
Confidence 68999999999999999999998887654
No 124
>KOG2753 consensus Uncharacterized conserved protein, contains PCI domain [General function prediction only]
Probab=24.51 E-value=71 Score=36.78 Aligned_cols=70 Identities=19% Similarity=0.202 Sum_probs=53.7
Q ss_pred cccccCHHHHHhhcCCCccchhHhhhhhhcccccceeeccCCceEEEccC-CCChHHHHHHHHHHHHhHhh
Q 002522 737 SYDSLSLDQLTKMFDLSEVQTHSIVSKMMINEELHASWDQPTHCIIFHDV-EHSRLQALAFQLTEKLSILA 806 (913)
Q Consensus 737 ~y~slSl~~L~~~F~L~~~~V~sivskmI~n~el~As~D~~~~~iv~~~~-e~trLQ~LAl~laeKv~~lv 806 (913)
-=..||.+.|++-.++.++.|.-.|=+.|-..-+.+.+||.+++|+++++ .+|-=+.==.+|-+|++...
T Consensus 291 es~eisy~~l~k~LqI~edeVE~fVIdaI~aklV~~kidq~~~~viVs~~~hR~FG~~qW~~L~~kL~aw~ 361 (378)
T KOG2753|consen 291 ESNEISYDTLAKELQINEDEVELFVIDAIRAKLVEGKIDQMNRTVIVSSSTHRTFGKQQWQQLRDKLAAWG 361 (378)
T ss_pred cCCCCCHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhHHhhcceEEeehhhhhhcccHHHHHHHHHHHHHH
Confidence 44679999999999999999999999999888889999999999999874 33322222234555555543
No 125
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=23.78 E-value=81 Score=35.61 Aligned_cols=58 Identities=12% Similarity=0.345 Sum_probs=50.7
Q ss_pred cccccccCHHHHHhhcCCCccchhHhhhhhhcccccceeeccCCceEEEccCC--CChHH
Q 002522 735 TSSYDSLSLDQLTKMFDLSEVQTHSIVSKMMINEELHASWDQPTHCIIFHDVE--HSRLQ 792 (913)
Q Consensus 735 ~~~y~slSl~~L~~~F~L~~~~V~sivskmI~n~el~As~D~~~~~iv~~~~e--~trLQ 792 (913)
-.-|..+-+..+|+-..+|+..|.+++-..|....|.+.+|+.++++.+.+.. -+||-
T Consensus 359 IkPYt~i~Ipfis~~Lnv~~~dV~~LLV~~ILD~~i~g~Ide~n~~l~~~~~~~s~~k~~ 418 (440)
T KOG1464|consen 359 IKPYTNIGIPFISKELNVPEADVESLLVSCILDDTIDGRIDEVNQYLELDKSKNSGSKLY 418 (440)
T ss_pred hccccccCchhhHhhcCCCHHHHHHHHHHHHhccccccchHHhhhHhccCccCCcchHHH
Confidence 45678889999999999999999999999999999999999999999997743 35543
No 126
>PF12802 MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP4_B 3KP2_A 3KP5_A 3KP3_B 3KP7_A 3NQO_B 3K0L_B ....
Probab=23.69 E-value=60 Score=26.90 Aligned_cols=32 Identities=16% Similarity=0.268 Sum_probs=27.2
Q ss_pred ccCHHHHHhhcCCCccchhHhhhhhhcccccc
Q 002522 740 SLSLDQLTKMFDLSEVQTHSIVSKMMINEELH 771 (913)
Q Consensus 740 slSl~~L~~~F~L~~~~V~sivskmI~n~el~ 771 (913)
.+++..||+.++++.+.|..+|.+|+..+=|.
T Consensus 21 ~~t~~~la~~l~~~~~~vs~~v~~L~~~Glv~ 52 (62)
T PF12802_consen 21 ELTQSELAERLGISKSTVSRIVKRLEKKGLVE 52 (62)
T ss_dssp GEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEE
T ss_pred CcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 38999999999999999999999998766543
No 127
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=23.66 E-value=1.2e+02 Score=25.54 Aligned_cols=58 Identities=17% Similarity=0.256 Sum_probs=43.9
Q ss_pred HHHHHHHHhhccccccCCCcchhhHHHHHHHHhhcCCHHHHHHHHhccccccccCChHHHH
Q 002522 655 KTFRRLLEVSERQTFTGPPENVRDHVMAATRALTKGDFQKAFDVINSLDVWRLLRNRESVL 715 (913)
Q Consensus 655 K~Frr~Le~~erq~f~GPPEn~rdhV~aA~kal~~GdWk~~~~~I~sikiW~l~p~~e~v~ 715 (913)
+.|...++..+|-.-.. |++..-+...|.-..+.|+|.+|...+.. ++..-|+...+.
T Consensus 9 ~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~--~l~~~p~~~~~~ 66 (73)
T PF13371_consen 9 EDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLER--ALELSPDDPDAR 66 (73)
T ss_pred CCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHH--HHHHCCCcHHHH
Confidence 44666677777766665 45888999999999999999999999874 467777655443
No 128
>TIGR03879 near_KaiC_dom probable regulatory domain. This model describes a common domain shared by two different families of proteins, each of which occurs regularly next to its corresponding partner family, a probable regulatory with homology to KaiC. By implication, this protein family likely is also involved in sensory transduction and/or regulation.
Probab=23.04 E-value=30 Score=31.41 Aligned_cols=37 Identities=3% Similarity=-0.005 Sum_probs=30.6
Q ss_pred eeccccccccCHHHHHhhcCCCccchhHhhhhhhccc
Q 002522 732 FTFTSSYDSLSLDQLTKMFDLSEVQTHSIVSKMMINE 768 (913)
Q Consensus 732 fty~~~y~slSl~~L~~~F~L~~~~V~sivskmI~n~ 768 (913)
|.-+.++.-+|...+|++.++|+.+|++.++++..++
T Consensus 24 f~L~R~~eGlS~kEIAe~LGIS~~TVk~~l~~~~~~~ 60 (73)
T TIGR03879 24 AALAREEAGKTASEIAEELGRTEQTVRNHLKGETKAG 60 (73)
T ss_pred HHHHHHHcCCCHHHHHHHHCcCHHHHHHHHhcCcccc
Confidence 4444677899999999999999999999999765543
No 129
>smart00668 CTLH C-terminal to LisH motif. Alpha-helical motif of unknown function.
Probab=22.71 E-value=1.4e+02 Score=24.27 Aligned_cols=23 Identities=26% Similarity=0.407 Sum_probs=19.1
Q ss_pred HHHHhhcCCHHHHHHHHhccccc
Q 002522 683 ATRALTKGDFQKAFDVINSLDVW 705 (913)
Q Consensus 683 A~kal~~GdWk~~~~~I~sikiW 705 (913)
-.+++..|||..|.+.+......
T Consensus 8 i~~~i~~g~~~~a~~~~~~~~~~ 30 (58)
T smart00668 8 IRELILKGDWDEALEWLSSLKPP 30 (58)
T ss_pred HHHHHHcCCHHHHHHHHHHcCHH
Confidence 35789999999999999876654
No 130
>PRK14161 heat shock protein GrpE; Provisional
Probab=22.68 E-value=4.1e+02 Score=28.05 Aligned_cols=101 Identities=13% Similarity=0.286 Sum_probs=61.3
Q ss_pred eecccccccHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHhhhhccCCCCHHHHHHHHhHHHHHHHHHhchHHH
Q 002522 57 VVRSAKDKRFEEMAATVDQMKNAMKINDWVSLQESFDKINKQLDKVMRVTEAEKVPTLYIKALVMLEDFLNQAMANKEAK 136 (913)
Q Consensus 57 VVkSaKdKr~eEl~~~i~~i~n~~ki~Dw~~i~~~Fd~L~K~~~K~~~~~~~~g~P~~yIk~L~~Led~v~e~~~dke~k 136 (913)
.|-++.+ .+++++.-++.++ +.|-.++.+|+++.|-..|-.....+.++=+|....|--+++| .-++..
T Consensus 20 ~~~~~~~-ei~~l~~e~~elk-----d~~lR~~AefeN~rkR~~ke~~~~~~~a~~~~~~~LLpv~Dnl-erAl~~---- 88 (178)
T PRK14161 20 IVETANP-EITALKAEIEELK-----DKLIRTTAEIDNTRKRLEKARDEAKDYAIATFAKELLNVSDNL-SRALAH---- 88 (178)
T ss_pred hhhhhHH-HHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHH-HHHHhc----
Confidence 3444433 2445555555443 6678999999999999998887665556656655555555555 333321
Q ss_pred hhcChhhhhhhHHHHHHHHHhhHHHHHHHHHHhh
Q 002522 137 KKMSSSNAKALNSMKQKLKKNNKQYEDLINKYRE 170 (913)
Q Consensus 137 KKms~~nakalntlKQklkK~~k~~e~~i~~yre 170 (913)
........+.++.+=|+-..+.+..-++++-=
T Consensus 89 --~~~~~~~~~~~~~~Gv~mi~k~l~~vL~~~Gv 120 (178)
T PRK14161 89 --KPANSDVEVTNIIAGVQMTKDELDKVFHKHHI 120 (178)
T ss_pred --CccccchhHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 11112234566777777777777777776653
No 131
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=22.46 E-value=1.4e+02 Score=21.55 Aligned_cols=26 Identities=23% Similarity=0.254 Sum_probs=21.0
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHhhh
Q 002522 555 AMAQLGLCAFRVGLVAEGHSCLSELY 580 (913)
Q Consensus 555 amvQLGLcAFR~GlI~EAh~~L~ei~ 580 (913)
+...+|.|-|..|.+.+|-.++....
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al 28 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRAL 28 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHH
Confidence 45678999999999999999988654
No 132
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=22.33 E-value=5e+02 Score=27.21 Aligned_cols=32 Identities=22% Similarity=0.379 Sum_probs=23.0
Q ss_pred ChhhhhhhHHHHHHHHHhhHHHHHHHHHHhhC
Q 002522 140 SSSNAKALNSMKQKLKKNNKQYEDLINKYREN 171 (913)
Q Consensus 140 s~~nakalntlKQklkK~~k~~e~~i~~yren 171 (913)
|..-..++...++-|...+..|++++.++-+|
T Consensus 155 ~~~~~~~l~e~~~~L~~l~~~f~~~~~~l~~~ 186 (199)
T PF10112_consen 155 SEEIKQSLEEIEETLDTLNQAFEKDLDKLLED 186 (199)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44445677777888888888888888766543
No 133
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=22.21 E-value=2.5e+02 Score=23.12 Aligned_cols=46 Identities=17% Similarity=0.345 Sum_probs=34.3
Q ss_pred CCcchhhHHHHHHHHhhcCCHHHHHHHHhccccccccCChHHHHHHHH
Q 002522 672 PPENVRDHVMAATRALTKGDFQKAFDVINSLDVWRLLRNRESVLEMLK 719 (913)
Q Consensus 672 PPEn~rdhV~aA~kal~~GdWk~~~~~I~sikiW~l~p~~e~v~~mL~ 719 (913)
-|.|..-.+.-|.-.+..|+|.+|..++..+ -...|+...+..++.
T Consensus 21 ~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~--~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 21 NPDNPEARLLLAQCYLKQGQYDEAEELLERL--LKQDPDNPEYQQLLA 66 (68)
T ss_dssp TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCC--HGGGTTHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH--HHHCcCHHHHHHHHh
Confidence 5888888888888889999999999999865 445566555555543
No 134
>smart00418 HTH_ARSR helix_turn_helix, Arsenical Resistance Operon Repressor.
Probab=22.16 E-value=1.1e+02 Score=24.39 Aligned_cols=39 Identities=13% Similarity=0.187 Sum_probs=32.9
Q ss_pred cccCHHHHHhhcCCCccchhHhhhhhhcccccceeeccC
Q 002522 739 DSLSLDQLTKMFDLSEVQTHSIVSKMMINEELHASWDQP 777 (913)
Q Consensus 739 ~slSl~~L~~~F~L~~~~V~sivskmI~n~el~As~D~~ 777 (913)
..+++..|++.|+++..+|..+|.+|...+-+....+..
T Consensus 9 ~~~~~~~i~~~l~is~~~v~~~l~~L~~~g~i~~~~~~~ 47 (66)
T smart00418 9 GELCVCELAEILGLSQSTVSHHLKKLREAGLVESRREGK 47 (66)
T ss_pred CCccHHHHHHHHCCCHHHHHHHHHHHHHCCCeeeeecCC
Confidence 568999999999999999999999999877776555533
No 135
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=22.10 E-value=3.8e+02 Score=26.38 Aligned_cols=24 Identities=17% Similarity=0.227 Sum_probs=16.3
Q ss_pred HHHHHHHHhcccHHHHHHHHHhhh
Q 002522 557 AQLGLCAFRVGLVAEGHSCLSELY 580 (913)
Q Consensus 557 vQLGLcAFR~GlI~EAh~~L~ei~ 580 (913)
.+||+|-++.|.+.||..++...+
T Consensus 96 ~~lg~~l~~~g~~~eAi~~~~~Al 119 (144)
T PRK15359 96 YQTGVCLKMMGEPGLAREAFQTAI 119 (144)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Confidence 366777777777777777766654
No 136
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=21.95 E-value=81 Score=31.63 Aligned_cols=10 Identities=20% Similarity=0.192 Sum_probs=5.1
Q ss_pred cCHHHHHhhc
Q 002522 741 LSLDQLTKMF 750 (913)
Q Consensus 741 lSl~~L~~~F 750 (913)
++-+.|-++|
T Consensus 46 ~te~~L~~~F 55 (144)
T PLN03134 46 TDDASLRDAF 55 (144)
T ss_pred CCHHHHHHHH
Confidence 3445555555
No 137
>PRK14140 heat shock protein GrpE; Provisional
Probab=21.88 E-value=4.9e+02 Score=27.80 Aligned_cols=106 Identities=15% Similarity=0.287 Sum_probs=63.9
Q ss_pred eeecccccccHHHHHHHHHHHHHhhh--cccHHHHHHHHHHHHHHHHHHhhhhccCCCCHHHHHHHHhHHHHHHHHHhch
Q 002522 56 RVVRSAKDKRFEEMAATVDQMKNAMK--INDWVSLQESFDKINKQLDKVMRVTEAEKVPTLYIKALVMLEDFLNQAMANK 133 (913)
Q Consensus 56 RVVkSaKdKr~eEl~~~i~~i~n~~k--i~Dw~~i~~~Fd~L~K~~~K~~~~~~~~g~P~~yIk~L~~Led~v~e~~~dk 133 (913)
-|--|+---.+++++.-+..++.... .+.|..++.+|+++.|-..|-.......++-+|.-..|--+++| .-+++-
T Consensus 29 ~~~~~~~~~~~~~l~~~i~~l~~ei~elkd~~lR~~Ae~eN~rkR~~rE~~~~~~~a~~~~~~~LLpvlDnL-erAl~~- 106 (191)
T PRK14140 29 TVEEESEAELLDEEQAKIAELEAKLDELEERYLRLQADFENYKRRIQKENEAAEKYRAQSLASDLLPALDNF-ERALQI- 106 (191)
T ss_pred hhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhc-
Confidence 34444444555555554444443332 47889999999999999988887655445555554444444444 333221
Q ss_pred HHHhhcChhhhhhhHHHHHHHHHhhHHHHHHHHHHhh
Q 002522 134 EAKKKMSSSNAKALNSMKQKLKKNNKQYEDLINKYRE 170 (913)
Q Consensus 134 e~kKKms~~nakalntlKQklkK~~k~~e~~i~~yre 170 (913)
......+.++.+-|+-.-+.+..-+++|-=
T Consensus 107 -------~~~~~~~~~i~~Gv~mi~k~l~~~L~k~GV 136 (191)
T PRK14140 107 -------EADDEQTKSLLKGVEMVHRQLLEALKKEGV 136 (191)
T ss_pred -------cCccchHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 112234567777777777778777776653
No 138
>TIGR03060 PS_II_psb29 photosystem II biogenesis protein Psp29. Psp29, originally designated sll1414 in Synechocystis 6803, is found universally in Cyanobacteria and in Arabidopsis. It was isolated and partially sequenced from purified photosystem II (PS II) in Synechocystis. While its function is unknown, mutant studies show an impairment in photosystem II biogenesis and/or stability, rather than in PS II core function.
Probab=21.85 E-value=1.2e+02 Score=32.93 Aligned_cols=50 Identities=16% Similarity=0.044 Sum_probs=43.6
Q ss_pred CCcchhhHHHHHHHHhhcCCHHHHHHHHhccccccccCChHHHHHHHHHH
Q 002522 672 PPENVRDHVMAATRALTKGDFQKAFDVINSLDVWRLLRNRESVLEMLKAK 721 (913)
Q Consensus 672 PPEn~rdhV~aA~kal~~GdWk~~~~~I~sikiW~l~p~~e~v~~mL~~k 721 (913)
|||.-|+-|..|...-..+|-++.+.--..+.-|--=.+.+.+...|...
T Consensus 68 ~Pee~~~~IF~Alc~a~~~dp~~~r~dA~~l~~~a~~~s~~~i~~~l~~~ 117 (214)
T TIGR03060 68 RPEEHLDALFDALCNSNGFDPEQLREDAKQLLEQAKGKGLDEILSWLTQA 117 (214)
T ss_pred CChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHhcc
Confidence 89999999999999999999999999888888887766778888888765
No 139
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=21.71 E-value=57 Score=28.43 Aligned_cols=37 Identities=27% Similarity=0.388 Sum_probs=25.3
Q ss_pred HHHHHHHhcccHHHHHHHHHhhhhC-Cccchhhccccc
Q 002522 558 QLGLCAFRVGLVAEGHSCLSELYSG-GKVKELLAQGIS 594 (913)
Q Consensus 558 QLGLcAFR~GlI~EAh~~L~ei~~s-~R~KELLAQG~~ 594 (913)
+-|+--|..|.+-|||..|-++|-. ..-+..+=||+.
T Consensus 4 ~~~~~l~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglI 41 (62)
T PF03745_consen 4 EEGIELFNAGDFFEAHEVLEELWKAAPGPERDFLQGLI 41 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHhHHHHHHHHHHCCcchHHHHHHHH
Confidence 3477889999999999999999952 111334446664
No 140
>PRK14158 heat shock protein GrpE; Provisional
Probab=21.50 E-value=4.1e+02 Score=28.47 Aligned_cols=91 Identities=8% Similarity=0.176 Sum_probs=58.0
Q ss_pred cHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHhhhhccCCCCHHHHHHHHhHHHHHHHHHhchHHHhhcChhhh
Q 002522 65 RFEEMAATVDQMKNAMKINDWVSLQESFDKINKQLDKVMRVTEAEKVPTLYIKALVMLEDFLNQAMANKEAKKKMSSSNA 144 (913)
Q Consensus 65 r~eEl~~~i~~i~n~~ki~Dw~~i~~~Fd~L~K~~~K~~~~~~~~g~P~~yIk~L~~Led~v~e~~~dke~kKKms~~na 144 (913)
.+++++.-+..++ +.|..++.+|+++.|-.+|-...+...++=+|.-..|--+++| .-++.. ...
T Consensus 48 ~l~~le~e~~el~-----d~~lR~~AefeN~RkR~~kE~e~~~~~a~~~~~~~lLpV~DnL-erAl~~---------~~~ 112 (194)
T PRK14158 48 ALAAKEAEAAANW-----DKYLRERADLENYRKRVQKEKEELLKYGNESLILEILPAVDNM-ERALDH---------ADE 112 (194)
T ss_pred HHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHH-HHHHhc---------cCc
Confidence 3455555544443 5689999999999999999887665445555544444444444 333321 112
Q ss_pred hhhHHHHHHHHHhhHHHHHHHHHHhh
Q 002522 145 KALNSMKQKLKKNNKQYEDLINKYRE 170 (913)
Q Consensus 145 kalntlKQklkK~~k~~e~~i~~yre 170 (913)
..+.++.+-|+-..+.+..-+++|-=
T Consensus 113 ~~~~~i~~Gv~mi~k~l~~vLek~Gv 138 (194)
T PRK14158 113 ESMSAIIEGIRMTLSMLLSTLKKFGV 138 (194)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 24677888888888888888876654
No 141
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=21.40 E-value=5.6e+02 Score=29.58 Aligned_cols=141 Identities=14% Similarity=0.143 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHhhcCChHHHHHHHHhhhhhhhccCCChhhHHHHHHHHHHHHHHHHhcccHHHHHHHHHhhhhCCccch
Q 002522 508 KARAMLCDIYHHALLDEFSTARDLLLMSHLQDNVQQMDVLSQILFNRAMAQLGLCAFRVGLVAEGHSCLSELYSGGKVKE 587 (913)
Q Consensus 508 r~RAmLc~IYh~ALhd~~~~ARDLlLmShLQe~I~~~Di~tQILyNRamvQLGLcAFR~GlI~EAh~~L~ei~~s~R~KE 587 (913)
|++..+..-.-....|+|.+|+.++.-..- ....--+| ......+|++.|...+|...|.......+ ..
T Consensus 83 ~~~~~~~~gl~a~~eGd~~~A~k~l~~~~~-------~~~~p~l~---~llaA~aA~~~g~~~~A~~~l~~A~~~~~-~~ 151 (398)
T PRK10747 83 RARKQTEQALLKLAEGDYQQVEKLMTRNAD-------HAEQPVVN---YLLAAEAAQQRGDEARANQHLERAAELAD-ND 151 (398)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHh-------cccchHHH---HHHHHHHHHHCCCHHHHHHHHHHHHhcCC-cc
Q ss_pred hhcccccccccCCCChhhHHHHHHhCCCcccccCHHHHHHHHHHHhHhhcchhhhccCCCccchhchHHHHHHHHhhccc
Q 002522 588 LLAQGISQSRYHEKTPEQERLERRRQMPYHMHINLELLEAVHLICAMLLEVPNMAANTHGAKSKVISKTFRRLLEVSERQ 667 (913)
Q Consensus 588 LLAQG~~~~r~~ekt~EQEk~ErrRqlPfHMHINlELLE~v~lisaMLlEIP~mAa~~~d~rrr~isK~Frr~Le~~erq 667 (913)
-++.++..-+.+-..-+-+.+.. .+.+.++..
T Consensus 152 ~~~~~l~~a~l~l~~g~~~~Al~---------------------------------------------~l~~~~~~~--- 183 (398)
T PRK10747 152 QLPVEITRVRIQLARNENHAARH---------------------------------------------GVDKLLEVA--- 183 (398)
T ss_pred hHHHHHHHHHHHHHCCCHHHHHH---------------------------------------------HHHHHHhcC---
Q ss_pred cccCCCcchhhHHHHHHHHhhcCCHHHHHHHHhccccccccCChH
Q 002522 668 TFTGPPENVRDHVMAATRALTKGDFQKAFDVINSLDVWRLLRNRE 712 (913)
Q Consensus 668 ~f~GPPEn~rdhV~aA~kal~~GdWk~~~~~I~sikiW~l~p~~e 712 (913)
|.|..-+-+.+.-.++.|||..+.+++..+.-...++..+
T Consensus 184 -----P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~ 223 (398)
T PRK10747 184 -----PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEH 223 (398)
T ss_pred -----CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHH
No 142
>PF08765 Mor: Mor transcription activator family; InterPro: IPR014875 Mor (Middle operon regulator) is a sequence specific DNA binding protein. It mediates transcription activation through its interactions with the C-terminal domains of the alpha and sigma subunits of bacterial RNA polymerase. The N-terminal region of Mor is the dimerisation region, and the C-terminal contains a helix-turn-helix motif which binds DNA []. ; PDB: 1RR7_A.
Probab=21.36 E-value=53 Score=31.34 Aligned_cols=26 Identities=23% Similarity=0.459 Sum_probs=20.9
Q ss_pred ccCHHHHHhhcCCCccchhHhhhhhh
Q 002522 740 SLSLDQLTKMFDLSEVQTHSIVSKMM 765 (913)
Q Consensus 740 slSl~~L~~~F~L~~~~V~sivskmI 765 (913)
-.++..||..|+|++..|..||.++=
T Consensus 72 G~n~~eLA~kyglS~r~I~~Ii~~~~ 97 (108)
T PF08765_consen 72 GMNVRELARKYGLSERQIYRIIKRVR 97 (108)
T ss_dssp SS-HHHHHHHHT--HHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 66899999999999999999999874
No 143
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=21.20 E-value=1.1e+03 Score=25.82 Aligned_cols=66 Identities=11% Similarity=0.028 Sum_probs=44.5
Q ss_pred hhhHHHHHHHHHHhhcCChHHHHHHHHhhhhhhhccCCChhhHHHHHHHHHHHHHHHHhcccHHHHHHHHHhhh
Q 002522 507 TKARAMLCDIYHHALLDEFSTARDLLLMSHLQDNVQQMDVLSQILFNRAMAQLGLCAFRVGLVAEGHSCLSELY 580 (913)
Q Consensus 507 ~r~RAmLc~IYh~ALhd~~~~ARDLlLmShLQe~I~~~Di~tQILyNRamvQLGLcAFR~GlI~EAh~~L~ei~ 580 (913)
.-...+|.+||+. .|+|.+|..++... + +.... +.. ++=.....||+|.+..|.+.+|..++..++
T Consensus 148 ~~~~~~la~i~~~--~g~~~eA~~~l~~~-l-~~~~~-~~~---~~~~~~~~la~~~~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 148 AWAVHAVAHVLEM--QGRFKEGIAFMESW-R-DTWDC-SSM---LRGHNWWHLALFYLERGDYEAALAIYDTHI 213 (355)
T ss_pred cHHHHHHHHHHHH--cCCHHHHHHHHHhh-h-hccCC-Ccc---hhHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 3456778888876 89999999876332 1 11111 111 111234578899999999999999999975
No 144
>KOG2141 consensus Protein involved in high osmolarity signaling pathway [Signal transduction mechanisms]
Probab=20.95 E-value=3.2e+02 Score=34.68 Aligned_cols=28 Identities=21% Similarity=0.211 Sum_probs=16.3
Q ss_pred CCHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHhcC
Q 002522 248 ITWENVNKKFKEVVAARGRKGTGRFEQVEQLTFLTKVAKT 287 (913)
Q Consensus 248 it~~~v~kkL~eIv~~RGKK~tDr~eqi~~L~~L~~iak~ 287 (913)
..+....++|. +.+ +=++|.+|...++.
T Consensus 298 YvPPslRkkl~------~~~------~sE~l~rl~rkv~g 325 (822)
T KOG2141|consen 298 YVPPSLRKKLE------TSS------ESEQLQRLRRKVNG 325 (822)
T ss_pred cCCHHHHHHhc------Ccc------chHHHHHHHHHHHH
Confidence 44556777766 344 33566666666665
No 145
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=20.90 E-value=3e+02 Score=33.22 Aligned_cols=160 Identities=23% Similarity=0.378 Sum_probs=92.6
Q ss_pred cCChHHHHHHHHhhhhhhhccCCChhhHHHHHHHHHHHHHHHHhcccHHHHHHHHHhhhh--------------------
Q 002522 522 LDEFSTARDLLLMSHLQDNVQQMDVLSQILFNRAMAQLGLCAFRVGLVAEGHSCLSELYS-------------------- 581 (913)
Q Consensus 522 hd~~~~ARDLlLmShLQe~I~~~Di~tQILyNRamvQLGLcAFR~GlI~EAh~~L~ei~~-------------------- 581 (913)
||+|.+|-.. --+.+++--.-||-||| +||-|=..|+..||..|..-|-.
T Consensus 503 ngd~dka~~~-----ykeal~ndasc~ealfn-----iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~le 572 (840)
T KOG2003|consen 503 NGDLDKAAEF-----YKEALNNDASCTEALFN-----IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLE 572 (840)
T ss_pred cCcHHHHHHH-----HHHHHcCchHHHHHHHH-----hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 4556665543 24455564455899998 89999999999999887543321
Q ss_pred -CCccchhhcccccccccCCCChh----------hHHHHHHhCCCccc------ccCHHHHHHHHHHHhHhhcchhhhcc
Q 002522 582 -GGKVKELLAQGISQSRYHEKTPE----------QERLERRRQMPYHM------HINLELLEAVHLICAMLLEVPNMAAN 644 (913)
Q Consensus 582 -s~R~KELLAQG~~~~r~~ekt~E----------QEk~ErrRqlPfHM------HINlELLE~v~lisaMLlEIP~mAa~ 644 (913)
+...-|||-|-.+.-+. .|. ||- +|-.-.-+|. --|+|.+| .+.|.-||.
T Consensus 573 d~aqaie~~~q~~slip~---dp~ilskl~dlydqeg-dksqafq~~ydsyryfp~nie~ie---wl~ayyidt------ 639 (840)
T KOG2003|consen 573 DPAQAIELLMQANSLIPN---DPAILSKLADLYDQEG-DKSQAFQCHYDSYRYFPCNIETIE---WLAAYYIDT------ 639 (840)
T ss_pred CHHHHHHHHHHhcccCCC---CHHHHHHHHHHhhccc-chhhhhhhhhhcccccCcchHHHH---HHHHHHHhh------
Confidence 11233455554432211 111 110 1111111221 13555554 334444432
Q ss_pred CCCccchhchHHHHHHHHhhccccccCCCcchhhHHHHHHHHhhcCCHHHHHHHHhccccccccCChHHHHHH
Q 002522 645 THGAKSKVISKTFRRLLEVSERQTFTGPPENVRDHVMAATRALTKGDFQKAFDVINSLDVWRLLRNRESVLEM 717 (913)
Q Consensus 645 ~~d~rrr~isK~Frr~Le~~erq~f~GPPEn~rdhV~aA~kal~~GdWk~~~~~I~sikiW~l~p~~e~v~~m 717 (913)
.| .-..+.++||..++-|-. .+=+.|-|+..-..|+|++|+++-+. |-..||..=.-+..
T Consensus 640 qf----------~ekai~y~ekaaliqp~~-~kwqlmiasc~rrsgnyqka~d~yk~--~hrkfpedldclkf 699 (840)
T KOG2003|consen 640 QF----------SEKAINYFEKAALIQPNQ-SKWQLMIASCFRRSGNYQKAFDLYKD--IHRKFPEDLDCLKF 699 (840)
T ss_pred HH----------HHHHHHHHHHHHhcCccH-HHHHHHHHHHHHhcccHHHHHHHHHH--HHHhCccchHHHHH
Confidence 11 123456788888887654 48899999999999999999999874 46778864444333
No 146
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=20.75 E-value=1e+02 Score=30.95 Aligned_cols=12 Identities=0% Similarity=0.086 Sum_probs=5.3
Q ss_pred CCccchhHhhhh
Q 002522 752 LSEVQTHSIVSK 763 (913)
Q Consensus 752 L~~~~V~sivsk 763 (913)
++++.+..+.++
T Consensus 46 ~te~~L~~~F~~ 57 (144)
T PLN03134 46 TDDASLRDAFAH 57 (144)
T ss_pred CCHHHHHHHHhc
Confidence 444444444443
No 147
>PF04218 CENP-B_N: CENP-B N-terminal DNA-binding domain; InterPro: IPR006695 Centromere Protein B (CENP-B) is a DNA-binding protein localized to the centromere. Within the N-terminal 125 residues, there is a DNA-binding region, which binds to a corresponding 17bp CENP-B box sequence. CENP-B dimers either bind two separate DNA molecules or alternatively, they may bind two CENP-B boxes on one DNA molecule, with the intervening stretch of DNA forming a loop structure. The CENP-B DNA-binding domain consists of two repeating domains, RP1 and RP2. This family corresponds to RP1 has been shown to consist of four helices in a helix-turn-helix structure [].; GO: 0003677 DNA binding, 0000775 chromosome, centromeric region; PDB: 1BW6_A 1HLV_A 2ELH_A.
Probab=20.57 E-value=60 Score=27.28 Aligned_cols=22 Identities=18% Similarity=0.300 Sum_probs=16.8
Q ss_pred cCHHHHHhhcCCCccchhHhhh
Q 002522 741 LSLDQLTKMFDLSEVQTHSIVS 762 (913)
Q Consensus 741 lSl~~L~~~F~L~~~~V~sivs 762 (913)
.|...||..|+++.++|..|+.
T Consensus 23 ~s~~~ia~~fgv~~sTv~~I~K 44 (53)
T PF04218_consen 23 ESKRDIAREFGVSRSTVSTILK 44 (53)
T ss_dssp T-HHHHHHHHT--CCHHHHHHH
T ss_pred CCHHHHHHHhCCCHHHHHHHHH
Confidence 3899999999999999988875
No 148
>PRK12533 RNA polymerase sigma factor; Provisional
Probab=20.46 E-value=2.9e+02 Score=29.36 Aligned_cols=29 Identities=10% Similarity=0.208 Sum_probs=25.9
Q ss_pred ccccccCHHHHHhhcCCCccchhHhhhhh
Q 002522 736 SSYDSLSLDQLTKMFDLSEVQTHSIVSKM 764 (913)
Q Consensus 736 ~~y~slSl~~L~~~F~L~~~~V~sivskm 764 (913)
.+|+-+|..++|+.+++|+.+|++.+++.
T Consensus 146 ~y~eg~s~~EIAe~LgiS~~tVk~~L~RA 174 (216)
T PRK12533 146 RELEDMSYREIAAIADVPVGTVMSRLARA 174 (216)
T ss_pred HHhcCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 46788999999999999999999988864
No 149
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=20.23 E-value=1e+02 Score=35.14 Aligned_cols=53 Identities=17% Similarity=0.249 Sum_probs=47.4
Q ss_pred ccccccCHHHHHhhcCCCccchhHhhhhhhcccccceeeccCCceEEEccCCC
Q 002522 736 SSYDSLSLDQLTKMFDLSEVQTHSIVSKMMINEELHASWDQPTHCIIFHDVEH 788 (913)
Q Consensus 736 ~~y~slSl~~L~~~F~L~~~~V~sivskmI~n~el~As~D~~~~~iv~~~~e~ 788 (913)
..|-.+||+.+|..|+.+-+-|..=+-+.|-++-|...+|..++.|-.+|.+-
T Consensus 327 ESYr~lsl~sMA~tFgVSV~yvdrDLg~FIp~~~LncvIDRvnGvVetnrpde 379 (412)
T COG5187 327 ESYRLLSLESMAQTFGVSVEYVDRDLGEFIPEGRLNCVIDRVNGVVETNRPDE 379 (412)
T ss_pred HHHHHhhHHHHHHHhCccHHHHhhhHHhhCCCCceeeeeecccceEeccCcch
Confidence 35778999999999999999999999999999999999999998888887655
Done!