Query 002522
Match_columns 913
No_of_seqs 194 out of 252
Neff 5.1
Searched_HMMs 29240
Date Tue Mar 26 15:49:10 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002522.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1243-1247//hhsearch_pdb/002522hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ufm_A COP9 complex subunit 4; 1.0 1 1 95.7 3.3 69 716-788 10-78 (84)
2 3txn_A 26S proteasome regulato 1.0 1 1 72.5 20.4 260 490-807 120-384 (394)
3 4b4t_Q 26S proteasome regulato 1.0 1 1 68.0 16.0 268 489-808 155-425 (434)
4 4b4t_R RPN7, 26S proteasome re 1.0 1 1 66.7 16.5 215 551-816 206-424 (429)
5 4b4t_P 26S proteasome regulato 1.0 1 1 63.7 17.7 247 489-788 157-407 (445)
6 4b4t_O 26S proteasome regulato 1.0 1 1 56.4 6.6 127 657-789 230-356 (393)
7 4b4t_S RPN3, 26S proteasome re 1.0 1 1 53.4 16.5 248 505-818 227-482 (523)
8 3t5x_A PCI domain-containing p 1.0 1 1 45.2 3.7 169 557-788 18-195 (203)
9 2pk2_A Cyclin-T1, protein TAT; 1.0 1 1 42.7 0.0 23 652-674 132-154 (358)
10 2pk2_A Cyclin-T1, protein TAT; 1.0 1 1 40.2 0.0 16 564-579 89-104 (358)
No 1
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47
Probab=1.00 E-value=1 Score=95.71 Aligned_cols=69 Identities=17% Similarity=0.362 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHHCEEECCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHCCCCCCEEECCCCCEEEECCCCC
Q ss_conf 9999999998523202201455564688889834188833016754644305655400016874599836787
Q 002522 716 EMLKAKIKEEALRTYLFTFTSSYDSLSLDQLTKMFDLSEVQTHSIVSKMMINEELHASWDQPTHCIIFHDVEH 788 (913)
Q Consensus 716 ~mL~~kIkeeaLRtYLfty~~~Y~slSl~~L~~~F~L~~~~V~sIvskMI~n~el~As~D~~~~~iv~~~~e~ 788 (913)
.+|..+|+|+.||+ ++.+|++++++.||++|+||.+.|.+++++||.+++|+|+|||++++|+|++.+|
T Consensus 10 ~~L~~~v~E~nl~~----is~~Y~~Isl~~La~ll~ls~~~vE~~ls~mI~~~~l~akIDq~~g~V~f~~~e~ 78 (84)
T 1ufm_A 10 SILDRAVIEHNLLS----ASKLYNNITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQIDGIVHFETREA 78 (84)
T ss_dssp CCCCHHHHHHHHHH----HHHSCSEEEHHHHHHHTTSCHHHHHHHHHHHHHTTSSCEEEETTTTEEEECCSSC
T ss_pred HHHHHHHHHHHHHH----HHHHCCEEEHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEECCCCEEEECCCCC
T ss_conf 99999999999999----9883396669999999793999999999999838927999948999899688565
No 2
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=1.00 E-value=1 Score=72.54 Aligned_cols=260 Identities=15% Similarity=0.200 Sum_probs=161.4
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HHHHCCCCCHHHHHHHHHHHHHHHHHHH-HCC
Q ss_conf 99999999997528711135888999999862077178999998442-2210138990469978798998878887-302
Q 002522 490 TMMDMLVSLIYKYGDERTKARAMLCDIYHHALLDEFSTARDLLLMSH-LQDNVQQMDVLSQILFNRAMAQLGLCAF-RVG 567 (913)
Q Consensus 490 ~li~~L~~~Iy~~~~~r~r~RAmLc~IYh~ALhd~~~~ARDLlLmSh-LQe~I~~~Di~tQILyNRamvQLGLcAF-R~G 567 (913)
.++..|-.++-+.++...-....|+.|=-+.--+++.++|.++-.+. +.+.|. .|+.+| .+--++-|+..+ ..+
T Consensus 120 ~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~-~~p~i~---a~i~~~~Gi~~l~~~r 195 (394)
T 3txn_A 120 ALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIY-CPPKVQ---GALDLQSGILHAADER 195 (394)
T ss_dssp HHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC-CCHHHH---HHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCC-CCHHHH---HHHHHHHHHHHHHHCC
T ss_conf 999999999752466022999999999999983549999999999985324678-988999---9999982488887434
Q ss_pred CHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHCCCCC
Q ss_conf 38999999886550895200011134544457899166798877279965455878999999997674210011005778
Q 002522 568 LVAEGHSCLSELYSGGKVKELLAQGISQSRYHEKTPEQERLERRRQMPYHMHINLELLEAVHLICAMLLEVPNMAANTHG 647 (913)
Q Consensus 568 lI~EAh~~L~ei~ss~R~KELLAQG~~~~r~~ekt~EQEk~ErrRqlPfHMHINleLLE~v~lisaMLlEVP~mAa~~~d 647 (913)
...+|+.++.|-+.+ |.+.. -.++ ...+ -.-.+|+||..- .+|
T Consensus 196 dyk~A~~~F~eaf~~---------------f~~~~----~~~~-----------~~~l-kYlvL~aLl~~~------r~e 238 (394)
T 3txn_A 196 DFKTAFSYFYEAFEG---------------FDSVD----SVKA-----------LTSL-KYMLLCKIMLGQ------SDD 238 (394)
T ss_dssp CHHHHHHHHHHHHHH---------------HTTTC----HHHH-----------HHHH-HHHHHHHHHTTC------GGG
T ss_pred CHHHHHHHHHHHHHC---------------CCCCC----CHHH-----------HHHH-HHHHHHHHHCCC------HHH
T ss_conf 799999999998725---------------36335----5778-----------9999-999999998499------889
Q ss_pred CCCHHCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCH--HHHHHHHHHHHHHH
Q ss_conf 6630111989999985005545699965356999997985108989999988012201024795--89999999999998
Q 002522 648 AKSKVISKTFRRLLEVSERQTFTGPPENVRDHVMAATRALTKGDFQKAFDVINSLDVWRLLRNR--ESVLEMLKAKIKEE 725 (913)
Q Consensus 648 ~r~r~isK~Frr~Le~~erq~f~GPPEn~rdhV~aA~kal~~Gdwk~~~~~I~slkiW~l~p~~--e~v~~mL~~kIkee 725 (913)
.+..+.++.+.+ |.+|. + +....-..|...||...+...+...+- .+..+. .....-|.++|.+.
T Consensus 239 l~~~l~~~~~~~---------~~~pe--i-~~l~~L~~a~~~~dl~~f~~iL~~~~~-~l~~D~~l~~h~~~L~~~Ir~~ 305 (394)
T 3txn_A 239 VNQLVSGKLAIT---------YSGRD--I-DAMKSVAEASHKRSLADFQAALKEYKK-ELAEDVIVQAHLGTLYDTMLEQ 305 (394)
T ss_dssp HHHHHHSHHHHT---------TCSHH--H-HHHHHHHHHHHTTCHHHHHHHHHHSTT-TTTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCCC---------CCCCC--H-HHHHHHHHHHHHCCHHHHHHHHHHHHH-HHHCCHHHHHHHHHHHHHHHHH
T ss_conf 999963420001---------57932--7-999999999870789999999999999-9843868999999999999999
Q ss_pred HHHHCEEECCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHCCCCCCEEECCCCCEEEECCCC-CCHHHHHHHHHHHHHHH
Q ss_conf 52320220145556468888983418883301675464430565540001687459983678-79579999999899967
Q 002522 726 ALRTYLFTFTSSYDSLSLDQLTKMFDLSEVQTHSIVSKMMINEELHASWDQPTHCIIFHDVE-HSRLQALAFQLTEKLSI 804 (913)
Q Consensus 726 aLRtYLfty~~~Y~slSl~~L~~~F~L~~~~V~sIvskMI~n~el~As~D~~~~~iv~~~~e-~trLQ~LA~~laeKv~~ 804 (913)
+|+-|+.. |.+++++.+|+.|++|.+.|..++++||..+.|.|.+|+++++|++.+.. .+....-++.....++.
T Consensus 306 ~L~~i~~p----YsrIsl~~iA~~l~ls~~evE~~L~~lI~dg~I~a~IDq~~giv~~~~~~~r~~~y~~ale~l~~ls~ 381 (394)
T 3txn_A 306 NLCRIIEP----YSRVQVAHVAESIQLPMPQVEKKLSQMILDKKFSGILDQGEGVLIVFEETPVDKTYERVLETIQSMGK 381 (394)
T ss_dssp HHHHHHTT----CSEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSSCEEEETTTTEEEECCC-------------------
T ss_pred HHHHHHHH----HCEEEHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCEEEECCCCCHHHHHHHHHHHHHHHHH
T ss_conf 99999574----43011999999979099999999999997798169976988978877886210599999999999999
Q ss_pred HHH
Q ss_conf 654
Q 002522 805 LAE 807 (913)
Q Consensus 805 lve 807 (913)
.|+
T Consensus 382 vVd 384 (394)
T 3txn_A 382 VVD 384 (394)
T ss_dssp ---
T ss_pred HHH
T ss_conf 999
No 3
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=68.04 Aligned_cols=268 Identities=12% Similarity=0.113 Sum_probs=157.0
Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-HHHCCCCCHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 9999999999975287111358889999998620771789999984422-210138990469978798998878887302
Q 002522 489 RTMMDMLVSLIYKYGDERTKARAMLCDIYHHALLDEFSTARDLLLMSHL-QDNVQQMDVLSQILFNRAMAQLGLCAFRVG 567 (913)
Q Consensus 489 ~~li~~L~~~Iy~~~~~r~r~RAmLc~IYh~ALhd~~~~ARDLlLmShL-Qe~I~~~Di~tQILyNRamvQLGLcAFR~G 567 (913)
..++..+....++.++....+.+.+..+--+-..++|-+|+.++-.+.- ...+.+ + +-+.-+...++|......|
T Consensus 155 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~-~---~~~~~~~~~~~g~~~~~~~ 230 (434)
T 4b4t_Q 155 LALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYC-P---TQTVAELDLMSGILHCEDK 230 (434)
T ss_dssp HHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC-C---HHHHHHHHHHHHHHTTSSS
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCC-C---HHHHHHHHHHHHHHHHHHH
T ss_conf 89999999998853651447999999999999847599999999999988642899-5---6789999999999999987
Q ss_pred CHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHCCCCC
Q ss_conf 38999999886550895200011134544457899166798877279965455878999999997674210011005778
Q 002522 568 LVAEGHSCLSELYSGGKVKELLAQGISQSRYHEKTPEQERLERRRQMPYHMHINLELLEAVHLICAMLLEVPNMAANTHG 647 (913)
Q Consensus 568 lI~EAh~~L~ei~ss~R~KELLAQG~~~~r~~ekt~EQEk~ErrRqlPfHMHINleLLE~v~lisaMLlEVP~mAa~~~d 647 (913)
...+|+.+..+.+.+-. ..+.. .. .. + -+..+ ...++|.++..-......
T Consensus 231 ~y~~A~~~~~~a~~~~~-----~~~~~-------~~-~~---~----------~~~~~-~~~~l~~~~~~~~~~~~~--- 280 (434)
T 4b4t_Q 231 DYKTAFSYFFESFESYH-----NLTTH-------NS-YE---K----------ACQVL-KYMLLSKIMLNLIDDVKN--- 280 (434)
T ss_dssp CHHHHHHHHHHHHHHHH-----HTTTS-------SC-HH---H----------HHHHH-HHHHHHHHHHTCHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHH-----HHHHH-------HH-HH---H----------HHHHH-HHHHHHHHHCCCHHHHHH---
T ss_conf 37899999999999755-----42011-------23-89---9----------99888-999999875012357875---
Q ss_pred CCCHHCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCC-CCCCHHHHHHHHHHHHHHHH
Q ss_conf 66301119899999850055456999653569999979851089899999880122010-24795899999999999985
Q 002522 648 AKSKVISKTFRRLLEVSERQTFTGPPENVRDHVMAATRALTKGDFQKAFDVINSLDVWR-LLRNRESVLEMLKAKIKEEA 726 (913)
Q Consensus 648 ~r~r~isK~Frr~Le~~erq~f~GPPEn~rdhV~aA~kal~~Gdwk~~~~~I~slkiW~-l~p~~e~v~~mL~~kIkeea 726 (913)
.+.......+...|+.. ..-.-..+...++...+...+......- ..+........+...+.+..
T Consensus 281 ------------~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 346 (434)
T 4b4t_Q 281 ------------ILNAKYTKETYQSRGID--AMKAVAEAYNNRSLLDFNTALKQYEKELMGDELTRSHFNALYDTLLESN 346 (434)
T ss_dssp ------------HHHCSSSSTTCCCHHHH--HHHHHHHHHHHTCHHHHHHHHHHTHHHHTCSHHHHHHHHHHHHHHHHHH
T ss_pred ------------HHHHHHHHHHHCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_conf ------------89789999871140045--7999999998226877888999999987011788999999999999999
Q ss_pred HHHCEEECCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHCCCCCCEEECCCCCEEEECC-CCCCHHHHHHHHHHHHHHHH
Q ss_conf 23202201455564688889834188833016754644305655400016874599836-78795799999998999676
Q 002522 727 LRTYLFTFTSSYDSLSLDQLTKMFDLSEVQTHSIVSKMMINEELHASWDQPTHCIIFHD-VEHSRLQALAFQLTEKLSIL 805 (913)
Q Consensus 727 LRtYLfty~~~Y~slSl~~L~~~F~L~~~~V~sIvskMI~n~el~As~D~~~~~iv~~~-~e~trLQ~LA~~laeKv~~l 805 (913)
++.+ ...|..++++.++++|.++...|..++++||..+.|.|.+|++.++|+|++ .++...-.-++...++++.+
T Consensus 347 l~~~----~~~y~~i~l~~la~~l~~~~~~~E~~l~~lI~~~~i~a~id~~~g~v~~~~~~~~~~~~~~~l~~~~~l~~~ 422 (434)
T 4b4t_Q 347 LCKI----IEPFECVEISHISKIIGLDTQQVEGKLSQMILDKIFYGVLDQGNGWLYVYETPNQDATYDSALELVGQLNKV 422 (434)
T ss_dssp HHHH----HSSCSCEEHHHHHHHHTCCHHHHHHHHHHHHHHTSSCCEEETTTTEEECC----------------------
T ss_pred HHHH----HHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCEECCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 9999----778776279999998693999999999999867982465456049676678743558999999999999999
Q ss_pred HHH
Q ss_conf 543
Q 002522 806 AES 808 (913)
Q Consensus 806 ve~ 808 (913)
|++
T Consensus 423 vd~ 425 (434)
T 4b4t_Q 423 VDQ 425 (434)
T ss_dssp ---
T ss_pred HHH
T ss_conf 999
No 4
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=66.67 Aligned_cols=215 Identities=16% Similarity=0.155 Sum_probs=133.4
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHH
Q ss_conf 78798998878887302389999998865508952000111345444578991667988772799654558789999999
Q 002522 551 LFNRAMAQLGLCAFRVGLVAEGHSCLSELYSGGKVKELLAQGISQSRYHEKTPEQERLERRRQMPYHMHINLELLEAVHL 630 (913)
Q Consensus 551 LyNRamvQLGLcAFR~GlI~EAh~~L~ei~ss~R~KELLAQG~~~~r~~ekt~EQEk~ErrRqlPfHMHINleLLE~v~l 630 (913)
+-||--+.-||...-.+...+|..++.|++.+--.. +...+. +.+ ....
T Consensus 206 ~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~~~~-------------------e~~~~~-----------~~~-~y~~ 254 (429)
T 4b4t_R 206 RRNRYKTYYGIHCLAVRNFKEAAKLLVDSLATFTSI-------------------ELTSYE-----------SIA-TYAS 254 (429)
T ss_dssp HHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHSCCS-------------------CHHHHH-----------HHH-HHHH
T ss_pred HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCC-------------------CHHHHH-----------HHH-HHHH
T ss_conf 999999999999988585999999999872667830-------------------003677-----------999-9999
Q ss_pred HHHHHHCCHHHHCCCCCCCCHHC-HHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHCC-C-CCCC
Q ss_conf 97674210011005778663011-1989999985005545699965356999997985108989999988012-2-0102
Q 002522 631 ICAMLLEVPNMAANTHGAKSKVI-SKTFRRLLEVSERQTFTGPPENVRDHVMAATRALTKGDFQKAFDVINSL-D-VWRL 707 (913)
Q Consensus 631 isaMLlEVP~mAa~~~d~r~r~i-sK~Frr~Le~~erq~f~GPPEn~rdhV~aA~kal~~Gdwk~~~~~I~sl-k-iW~l 707 (913)
+|+|+.-- ..+.+.+++ +..|+..++.- |+ -.-+..-..++..++|..|+..+... . ....
T Consensus 255 l~al~~~~------r~~l~~~v~~~~~~~~~l~~~--------p~--~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~ 318 (429)
T 4b4t_R 255 VTGLFTLE------RTDLKSKVIDSPELLSLISTT--------AA--LQSISSLTISLYASDYASYFPYLLETYANVLIP 318 (429)
T ss_dssp HHHHHTTC------HHHHHHSSSSSHHHHHGGGSH--------HH--HHHHHHHHHHHHHTCHHHHHHHHHHHHSTTTTT
T ss_pred HHHHHCCC------HHHHHHHHHCCHHHHHHCCCC--------HH--HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCC
T ss_conf 99984488------888999986088877540478--------55--899999999998415889999999998756404
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHCEEECCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHCCCCCCEEECCCCCEEEECCCC
Q ss_conf 47958999999999999852320220145556468888983418883301675464430565540001687459983678
Q 002522 708 LRNRESVLEMLKAKIKEEALRTYLFTFTSSYDSLSLDQLTKMFDLSEVQTHSIVSKMMINEELHASWDQPTHCIIFHDVE 787 (913)
Q Consensus 708 ~p~~e~v~~mL~~kIkeeaLRtYLfty~~~Y~slSl~~L~~~F~L~~~~V~sIvskMI~n~el~As~D~~~~~iv~~~~e 787 (913)
.+--..-..-|.+.|.+-+++.|+ ..|.+++++.||+.|+++...|...+++||.++.|+|.+|+++++|++.+.+
T Consensus 319 d~~l~~h~~~l~~~ir~~~l~q~~----~~Ys~I~l~~mA~~l~~s~~~~E~~L~~lI~~g~l~akID~~~giv~~~~~d 394 (429)
T 4b4t_R 319 CKYLNRHADFFVREMRRKVYAQLL----ESYKTLSLKSMASAFGVSVAFLDNDLGKFIPNKQLNCVIDRVNGIVETNRPD 394 (429)
T ss_dssp CTTSTTTHHHHHHHHHHHHHHHHH----HTCSEEEHHHHHHHHTSCHHHHHHHHHHHHHHTSSCEEEETTTTEEEECC--
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHH----HHHCEEEHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCEEEECCCC
T ss_conf 778899999999999999999996----8854202999999969299999999999997698589985988989877998
Q ss_pred C-CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 7-9579999999899967654346567622
Q 002522 788 H-SRLQALAFQLTEKLSILAESNERAMESR 816 (913)
Q Consensus 788 ~-trLQ~LA~~laeKv~~lve~NEr~~~~k 816 (913)
+ +.+-.-+++-.|.+.+-+..=.|+++.+
T Consensus 395 ~~~~~y~~~i~~gd~Ll~riqkl~~~i~l~ 424 (429)
T 4b4t_R 395 NKNAQYHLLVKQGDGLLTKLQKYGAAVRLT 424 (429)
T ss_dssp ------------------------------
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 243899999999999999999999998112
No 5
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=63.71 Aligned_cols=247 Identities=14% Similarity=0.133 Sum_probs=145.4
Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 99999999999752871113588899999986207717899999844222101389904699787989988788873023
Q 002522 489 RTMMDMLVSLIYKYGDERTKARAMLCDIYHHALLDEFSTARDLLLMSHLQDNVQQMDVLSQILFNRAMAQLGLCAFRVGL 568 (913)
Q Consensus 489 ~~li~~L~~~Iy~~~~~r~r~RAmLc~IYh~ALhd~~~~ARDLlLmShLQe~I~~~Di~tQILyNRamvQLGLcAFR~Gl 568 (913)
..++..|-...|...+.+.++..+|.++=-+-..++|-.|+-++--...--.-...++.+|+-|---++.+. -..+.
T Consensus 157 ~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~---~~e~~ 233 (445)
T 4b4t_P 157 ADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKIS---LHKRE 233 (445)
T ss_dssp HHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHH---HHHCC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH---HHHHH
T ss_conf 999999999998415688999999999999987778999999999998764146886899999999978999---87412
Q ss_pred HHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHCCCCCC
Q ss_conf 89999998865508952000111345444578991667988772799654558789999999976742100110057786
Q 002522 569 VAEGHSCLSELYSGGKVKELLAQGISQSRYHEKTPEQERLERRRQMPYHMHINLELLEAVHLICAMLLEVPNMAANTHGA 648 (913)
Q Consensus 569 I~EAh~~L~ei~ss~R~KELLAQG~~~~r~~ekt~EQEk~ErrRqlPfHMHINleLLE~v~lisaMLlEVP~mAa~~~d~ 648 (913)
..+|+.+..+++.+-.. ++ ++ .+++ .+|.+ .++|.+|-. ...+
T Consensus 234 y~~a~~~y~e~~~~~~~-----~~---------d~------~~~~---------~~L~~-~v~~~iLa~------~~~~- 276 (445)
T 4b4t_P 234 YLEVAQYLQEIYQTDAI-----KS---------DE------AKWK---------PVLSH-IVYFLVLSP------YGNL- 276 (445)
T ss_dssp HHHHHHHHHHHHHHHHH-----HS---------CH------HHHH---------HHHHH-HHHHHHHSS------CSST-
T ss_pred HHHHHHHHHHHHHCCCC-----CC---------CH------HHHH---------HHHHH-HHHHHHHCC------CCCH-
T ss_conf 99999999999814354-----47---------99------9999---------99999-999998289------9856-
Q ss_pred CCHHCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH----CCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 6301119899999850055456999653569999979851089899999880----122010247958999999999999
Q 002522 649 KSKVISKTFRRLLEVSERQTFTGPPENVRDHVMAATRALTKGDFQKAFDVIN----SLDVWRLLRNRESVLEMLKAKIKE 724 (913)
Q Consensus 649 r~r~isK~Frr~Le~~erq~f~GPPEn~rdhV~aA~kal~~Gdwk~~~~~I~----slkiW~l~p~~e~v~~mL~~kIke 724 (913)
+.++.++.+.. . + +.--| .++ .++.|+..-.--.|........ .-.++..-.....-..-|..+|-|
T Consensus 277 ~~~ll~~~~~~----~-~--~~~l~-~~~-~L~k~f~~~~L~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~L~~~v~e 347 (445)
T 4b4t_P 277 QNDLIHKIQND----N-N--LKKLE-SQE-SLVKLFTTNELMRWPIVQKTYEPVLNEDDLAFGGEANKHHWEDLQKRVIE 347 (445)
T ss_dssp THHHHHSHHHH----S-S--CHHHH-HHH-HHHHHHHHCCSSSHHHHHHHTCSSTTTCCSSCCCSCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHC----C-C--CCCCH-HHH-HHHHHHHHCHHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHH
T ss_conf 99998877510----3-2--00038-999-99999876657631999999998846450022021036799999999999
Q ss_pred HHHHHCEEECCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHCCCCCCEEECCCCCEEEECCCCC
Q ss_conf 8523202201455564688889834188833016754644305655400016874599836787
Q 002522 725 EALRTYLFTFTSSYDSLSLDQLTKMFDLSEVQTHSIVSKMMINEELHASWDQPTHCIIFHDVEH 788 (913)
Q Consensus 725 eaLRtYLfty~~~Y~slSl~~L~~~F~L~~~~V~sIvskMI~n~el~As~D~~~~~iv~~~~e~ 788 (913)
..|+. .+.+|+.++++.|+++++||...|...+++||..+-|.|.+|||++.|+|.+..+
T Consensus 348 hnl~~----i~k~Ys~I~l~~la~lL~l~~~evE~~ls~mI~~g~i~akIDq~~giV~F~~~~~ 407 (445)
T 4b4t_P 348 HNLRV----ISEYYSRITLLRLNELLDLTESQTETYISDLVNQGIIYAKVNRPAKIVNFEKPKN 407 (445)
T ss_dssp HHHHH----HHHHEEEEEHHHHHHHHTSCHHHHHHHHHHHHHHTSSCCEEETTTTEEEC-----
T ss_pred HHHHH----HHHHHCEEEHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCEEEECCCCC
T ss_conf 99999----9887064129999999691999999999999977987899769889787789997
No 6
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=56.39 Aligned_cols=127 Identities=21% Similarity=0.201 Sum_probs=96.0
Q ss_pred HHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCEEECCC
Q ss_conf 99999850055456999653569999979851089899999880122010247958999999999999852320220145
Q 002522 657 FRRLLEVSERQTFTGPPENVRDHVMAATRALTKGDFQKAFDVINSLDVWRLLRNRESVLEMLKAKIKEEALRTYLFTFTS 736 (913)
Q Consensus 657 Frr~Le~~erq~f~GPPEn~rdhV~aA~kal~~Gdwk~~~~~I~slkiW~l~p~~e~v~~mL~~kIkeeaLRtYLfty~~ 736 (913)
|-.+|..-.-+.+...|+.. .+..--++...|||..-..++.. -|..+|.-..-...+.+||..-+|-.-+|. .
T Consensus 230 f~eLL~~p~i~~L~~~~~~~--~l~~Ll~~f~~g~~~~f~~~~~~--~~~~~~~l~~~~~~l~~kirll~l~~l~~~--~ 303 (393)
T 4b4t_O 230 FGELLHHPIMETIVNDSNYD--WLFQLLNALTVGDFDKFDSLIKV--QISKIPILAQHESFLRQKICLMTLIETVFV--K 303 (393)
T ss_dssp THHHHHSCCTTSSCSSSSTT--HHHHHHHHHHHTCHHHHHHHCCH--HHHHSHHHHHHHHHHHHHHHHHHHHHHHCS--S
T ss_pred HHHHHCCHHHHHHHCCCCHH--HHHHHHHHHHCCCHHHHHHHHHH--HHHHCCCHHHHHHHHHHHHHHHHHHHHHCC--C
T ss_conf 58886784778764697368--99999999865999999999987--154084112218999999999999987514--7
Q ss_pred CCCCCCHHHHHHHCCCCCCCHHHHHHHHHCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf 55646888898341888330167546443056554000168745998367879
Q 002522 737 SYDSLSLDQLTKMFDLSEVQTHSIVSKMMINEELHASWDQPTHCIIFHDVEHS 789 (913)
Q Consensus 737 ~Y~slSl~~L~~~F~L~~~~V~sIvskMI~n~el~As~D~~~~~iv~~~~e~t 789 (913)
.|.+|+.+.+++.+++|...|..+|.+||..+-|.|.+||.+++|+|+.+.|-
T Consensus 304 ~~~~i~f~~ia~~l~i~~~evE~lli~aI~~glI~GkIDQv~~~v~v~~~~pR 356 (393)
T 4b4t_O 304 NIRMLSFEDISKATHLPKDNVEHLVMRAISLGLLKGSIDQVNELVTISWVQPR 356 (393)
T ss_dssp SCCCEEHHHHHHHHTCCHHHHHHHHHHHHHHSCSSSCEETTTTEECC------
T ss_pred CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCEEEEEECCCC
T ss_conf 78837599999896909999999999999859879998687788999731677
No 7
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=53.44 Aligned_cols=248 Identities=15% Similarity=0.132 Sum_probs=150.3
Q ss_pred CCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC
Q ss_conf 111358889999998620771789999984422210138-9904699787989988788873023899999988655089
Q 002522 505 ERTKARAMLCDIYHHALLDEFSTARDLLLMSHLQDNVQQ-MDVLSQILFNRAMAQLGLCAFRVGLVAEGHSCLSELYSGG 583 (913)
Q Consensus 505 ~r~r~RAmLc~IYh~ALhd~~~~ARDLlLmShLQe~I~~-~Di~tQILyNRamvQLGLcAFR~GlI~EAh~~L~ei~ss~ 583 (913)
....+.-+-|.+=+|=.++.|-+|-.++ |+.+ .+.+ +..+. +.|=.--+|-..+-.+...+||.+|..=+..
T Consensus 227 ~~~qa~l~nllLRnYL~~~~y~qA~~lv--sk~~-fP~~~~sn~q---~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk- 299 (523)
T 4b4t_S 227 NETKAMLINLILRDFLNNGEVDSASDFI--SKLE-YPHTDVSSSL---EARYFFYLSKINAIQLDYSTANEYIIAAIRK- 299 (523)
T ss_dssp SCHHHHHHHHHHHHHHHSSCSTTHHHHH--HHHC-SCTTTSCHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS-
T ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHH--HCCC-CCCCCCCHHH---HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH-
T ss_conf 5216899999999987558578999998--4586-8866588899---9999999999999863599999999999996-
Q ss_pred CCCHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHH--HHHHHHHHH-CCHHHHCCCCCCCCHHCHHHHHHH
Q ss_conf 52000111345444578991667988772799654558789999--999976742-100110057786630111989999
Q 002522 584 KVKELLAQGISQSRYHEKTPEQERLERRRQMPYHMHINLELLEA--VHLICAMLL-EVPNMAANTHGAKSKVISKTFRRL 660 (913)
Q Consensus 584 R~KELLAQG~~~~r~~ekt~EQEk~ErrRqlPfHMHINleLLE~--v~lisaMLl-EVP~mAa~~~d~r~r~isK~Frr~ 660 (913)
-|.+-.-+-..+.| ...+|.||+ +||. |...-.+.+++.
T Consensus 300 ------------------------------ap~~~~a~gfr~~a~K~lI~V~LLlG~iP~--------r~lf~q~~l~~~ 341 (523)
T 4b4t_S 300 ------------------------------APHNSKSLGFLQQSNKLHCCIQLLMGDIPE--------LSFFHQSNMQKS 341 (523)
T ss_dssp ------------------------------CSCSSSCSHHHHHHHHHHHHHHHHHTCCCC--------HHHHTTTSCHHH
T ss_pred ------------------------------CCCCHHHHHHHHHHHHHHHHHHHHCCCCCC--------HHHHHCHHHHHH
T ss_conf ------------------------------896142246999999999869962689998--------577616657877
Q ss_pred HHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHCC-CCCCCCCCHHHHHHHHHHHHHHHHHHHCEEECCCCCC
Q ss_conf 985005545699965356999997985108989999988012-2010247958999999999999852320220145556
Q 002522 661 LEVSERQTFTGPPENVRDHVMAATRALTKGDFQKAFDVINSL-DVWRLLRNRESVLEMLKAKIKEEALRTYLFTFTSSYD 739 (913)
Q Consensus 661 Le~~erq~f~GPPEn~rdhV~aA~kal~~Gdwk~~~~~I~sl-kiW~l~p~~e~v~~mL~~kIkeeaLRtYLfty~~~Y~ 739 (913)
|.-| ..-++|.+.||+..=...+..- .+|.--.+. .|..++..--.|+-|-.-+..|.
T Consensus 342 L~pY----------------~~Lv~Avr~GdL~~F~~~L~~h~~~F~~Dgty-----~LI~rLr~~vir~~irkis~~Ys 400 (523)
T 4b4t_S 342 LLPY----------------YHLTKAVKLGDLKKFTSTITKYKQLLLKDDTY-----QLCVRLRSNVIKTGIRIISLTYK 400 (523)
T ss_dssp HHHH----------------HHHHHHHHHTCHHHHHHHHHHTHHHHHHTTCT-----HHHHHHHHHHHHHHHHHSCCCSS
T ss_pred HHHH----------------HHHHHHHHCCCHHHHHHHHHHHCCEECCCCHH-----HHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 7889----------------99999998089999999999840412059814-----99999999999999999889870
Q ss_pred CCCHHHHHHHCCCC-CCCHHHHHHHHHCCCCCCEEECCCCCEEEECC-CCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q ss_conf 46888898341888-33016754644305655400016874599836-78795799999998999676543-46567622
Q 002522 740 SLSLDQLTKMFDLS-EVQTHSIVSKMMINEELHASWDQPTHCIIFHD-VEHSRLQALAFQLTEKLSILAES-NERAMESR 816 (913)
Q Consensus 740 slSl~~L~~~F~L~-~~~V~sIvskMI~n~el~As~D~~~~~iv~~~-~e~trLQ~LA~~laeKv~~lve~-NEr~~~~k 816 (913)
.||+..++....|+ ...+..||.+||..+.|.|.+|+..++|+++. .+.-.=......+..++....+. ||.+-.||
T Consensus 401 rIsL~dIa~kL~L~s~eeaE~iVAkmI~dG~I~A~Idh~~g~v~ske~~d~yst~ep~~af~~RI~~cl~L~ne~vkaMr 480 (523)
T 4b4t_S 401 KISLRDICLKLNLDSEQTVEYMVSRAIRDGVIEAKINHEDGFIETTELLNIYDSEDPQQVFDERIKFANQLHDEYLVSMR 480 (523)
T ss_dssp EECHHHHHHHHHHHHSSCHHHHHHHHHHHTSSCCEECTTTCCEECCSSSCC-----------------------------
T ss_pred CCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCCEEEEECCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 12589998783899888899999999984981699956888898576654316277999999999999999999999706
Q ss_pred CC
Q ss_conf 28
Q 002522 817 TG 818 (913)
Q Consensus 817 ~g 818 (913)
..
T Consensus 481 yp 482 (523)
T 4b4t_S 481 YP 482 (523)
T ss_dssp --
T ss_pred CC
T ss_conf 78
No 8
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=1.00 E-value=1 Score=45.24 Aligned_cols=169 Identities=14% Similarity=0.198 Sum_probs=109.6
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHH-HHHH
Q ss_conf 988788873023899999988655089520001113454445789916679887727996545587899999999-7674
Q 002522 557 AQLGLCAFRVGLVAEGHSCLSELYSGGKVKELLAQGISQSRYHEKTPEQERLERRRQMPYHMHINLELLEAVHLI-CAML 635 (913)
Q Consensus 557 vQLGLcAFR~GlI~EAh~~L~ei~ss~R~KELLAQG~~~~r~~ekt~EQEk~ErrRqlPfHMHINleLLE~v~li-saML 635 (913)
=-+|..+|..+...+||.+|.+-+.. .++.. .+ |..++ ..||| |.||
T Consensus 18 YYlGr~~~~~~~y~~A~~~L~~A~~~---------------~~~~~------~~----------~k~~I-L~yLIp~~Ll 65 (203)
T 3t5x_A 18 YYVGRKAMFDSDFKQAEEYLSFAFEH---------------CHRSS------QK----------NKRMI-LIYLLPVKML 65 (203)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH---------------SCTTC------HH----------HHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHCHHHHHHHHHHHHHH---------------CCHHH------HH----------HHHHH-HHHHHHHHHH
T ss_conf 99999999984799999999999997---------------77867------99----------99999-9999999998
Q ss_pred HCCHHHHCCCCCCCCHHCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCHHHHH
Q ss_conf 21001100577866301119899999850055456999653569999979851089899999880122010247958999
Q 002522 636 LEVPNMAANTHGAKSKVISKTFRRLLEVSERQTFTGPPENVRDHVMAATRALTKGDFQKAFDVINSLDVWRLLRNRESVL 715 (913)
Q Consensus 636 lEVP~mAa~~~d~r~r~isK~Frr~Le~~erq~f~GPPEn~rdhV~aA~kal~~Gdwk~~~~~I~slkiW~l~p~~e~v~ 715 (913)
+.. +-++.. ++.++-. | . ..=.+|.+.||.+.--+.+..-..|=.- +.+.
T Consensus 66 ~G~-------------iP~~~l---l~~~~~~-----~--y----~~L~~Avr~Gdl~~f~~~l~~~~~~f~~---~~~~ 115 (203)
T 3t5x_A 66 LGH-------------MPTVEL---LKKYHLM-----Q--F----AEVTRAVSEGNLLLLHEALAKHEAFFIR---CGIF 115 (203)
T ss_dssp TTC-------------EECHHH---HHHTTCG-----G--G----HHHHHHHHHTCHHHHHHHHHHTHHHHHH---HTCH
T ss_pred CCC-------------CCCHHH---HHHCCHH-----H--H----HHHHHHHHHCCHHHHHHHHHHHHHHHHH---CCHH
T ss_conf 579-------------989899---6307255-----7--9----9999999959999999999981999998---7969
Q ss_pred HHHHHHHHHHHHHHCEEECC--CCCCCCCHHHHHHHCC------CCCCCHHHHHHHHHCCCCCCEEECCCCCEEEECCCC
Q ss_conf 99999999985232022014--5556468888983418------883301675464430565540001687459983678
Q 002522 716 EMLKAKIKEEALRTYLFTFT--SSYDSLSLDQLTKMFD------LSEVQTHSIVSKMMINEELHASWDQPTHCIIFHDVE 787 (913)
Q Consensus 716 ~mL~~kIkeeaLRtYLfty~--~~Y~slSl~~L~~~F~------L~~~~V~sIvskMI~n~el~As~D~~~~~iv~~~~e 787 (913)
.+.++++.-.+|+.+-.-. ..|..++++.++..+. ++.+.|.+||.+||..+-|.|.+|+..+++|+.+.+
T Consensus 116 -lll~rlr~~v~r~l~rkv~~~~~~~rI~l~~i~~~l~~~~~~~~~~~evE~ila~lI~~G~Ikg~I~~~~~~lVlsk~~ 194 (203)
T 3t5x_A 116 -LILEKLKIITYRNLFKKVYLLLKTHQLSLDAFLVALKFMQVEDVDIDEVQCILANLIYMGHVKGYISHQHQKLVVSKQN 194 (203)
T ss_dssp -HHHHTHHHHHHHHHHHHHHHHHCCSEEEHHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSSCEEEETTTTEEEECSSC
T ss_pred -HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCEEEECCCC
T ss_conf -9999989999999999999855888455999999998567889998999999999997193489983014678877999
Q ss_pred C
Q ss_conf 7
Q 002522 788 H 788 (913)
Q Consensus 788 ~ 788 (913)
|
T Consensus 195 p 195 (203)
T 3t5x_A 195 P 195 (203)
T ss_dssp S
T ss_pred C
T ss_conf 9
No 9
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=1.00 E-value=1 Score=42.69 Aligned_cols=23 Identities=9% Similarity=-0.055 Sum_probs=9.7
Q ss_pred HCHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 11198999998500554569996
Q 002522 652 VISKTFRRLLEVSERQTFTGPPE 674 (913)
Q Consensus 652 ~isK~Frr~Le~~erq~f~GPPE 674 (913)
-|-+.-+.+|+.-+-..-+--|.
T Consensus 132 ~Il~~E~~IL~~L~f~L~v~~P~ 154 (358)
T 2pk2_A 132 DLVILESIILQTLGFELTIDHPH 154 (358)
T ss_dssp GGGTHHHHHHHHTTTCCCCCCTT
T ss_pred HHHHHHHHHHHHCCCCEECCCHH
T ss_conf 99999999999849954578889
No 10
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=1.00 E-value=1 Score=40.20 Aligned_cols=16 Identities=25% Similarity=0.250 Sum_probs=5.5
Q ss_pred HHCCCHHHHHHHHHHH
Q ss_conf 7302389999998865
Q 002522 564 FRVGLVAEGHSCLSEL 579 (913)
Q Consensus 564 FR~GlI~EAh~~L~ei 579 (913)
|-++.+.|..--|.||
T Consensus 89 fLA~K~EE~p~~l~d~ 104 (358)
T 2pk2_A 89 FLAAKVEEQPKKLEHV 104 (358)
T ss_dssp HHHHHHTTCCCCHHHH
T ss_pred HHHHHHCCCCCCHHHH
T ss_conf 9998652579899999
Done!