Query 002523
Match_columns 912
No_of_seqs 458 out of 2034
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 01:42:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002523.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002523hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5560 UBP12 Ubiquitin C-term 100.0 2E-109 4E-114 914.4 37.0 711 96-908 46-797 (823)
2 KOG1870 Ubiquitin C-terminal h 100.0 5.4E-89 1.2E-93 832.9 37.2 785 85-909 4-817 (842)
3 COG5533 UBP5 Ubiquitin C-termi 100.0 1.7E-56 3.7E-61 459.4 19.2 308 336-908 68-388 (415)
4 KOG1865 Ubiquitin carboxyl-ter 100.0 2E-55 4.4E-60 488.7 19.2 278 336-908 105-385 (545)
5 cd02663 Peptidase_C19G A subfa 100.0 1.7E-54 3.7E-59 478.1 25.2 263 341-908 1-269 (300)
6 cd02671 Peptidase_C19O A subfa 100.0 5.3E-53 1.2E-57 469.8 29.0 276 333-908 18-300 (332)
7 cd02668 Peptidase_C19L A subfa 100.0 1.3E-52 2.8E-57 468.1 27.8 269 341-908 1-280 (324)
8 cd02660 Peptidase_C19D A subfa 100.0 7E-52 1.5E-56 463.2 29.1 293 340-908 1-305 (328)
9 cd02669 Peptidase_C19M A subfa 100.0 1.7E-51 3.7E-56 475.2 29.3 281 333-908 113-417 (440)
10 cd02667 Peptidase_C19K A subfa 100.0 1.8E-51 3.9E-56 449.2 23.6 220 341-901 1-225 (279)
11 cd02664 Peptidase_C19H A subfa 100.0 9.1E-51 2E-55 453.4 24.8 246 341-902 1-268 (327)
12 cd02657 Peptidase_C19A A subfa 100.0 2.2E-49 4.8E-54 438.6 26.8 262 341-908 1-275 (305)
13 KOG1868 Ubiquitin C-terminal h 100.0 7.1E-51 1.5E-55 473.3 15.4 313 334-908 296-621 (653)
14 cd02658 Peptidase_C19B A subfa 100.0 8.6E-49 1.9E-53 435.1 27.4 267 341-908 1-288 (311)
15 cd02661 Peptidase_C19E A subfa 100.0 6.3E-49 1.4E-53 433.9 26.0 278 339-908 1-281 (304)
16 cd02659 peptidase_C19C A subfa 100.0 7.4E-48 1.6E-52 431.8 26.0 270 338-908 1-285 (334)
17 cd02662 Peptidase_C19F A subfa 100.0 7E-43 1.5E-47 373.1 22.8 91 788-902 96-187 (240)
18 cd02674 Peptidase_C19R A subfa 100.0 8.1E-41 1.8E-45 354.7 18.7 121 788-908 84-207 (230)
19 KOG1873 Ubiquitin-specific pro 100.0 2.7E-40 5.9E-45 373.1 10.1 155 334-520 200-368 (877)
20 KOG1867 Ubiquitin-specific pro 100.0 3.1E-39 6.8E-44 370.5 18.0 297 333-908 155-459 (492)
21 KOG0944 Ubiquitin-specific pro 100.0 7.2E-39 1.6E-43 358.8 19.5 154 333-520 301-465 (763)
22 cd02666 Peptidase_C19J A subfa 100.0 3.5E-38 7.5E-43 350.7 13.9 159 339-521 1-178 (343)
23 cd02665 Peptidase_C19I A subfa 100.0 1.9E-37 4.1E-42 324.4 16.3 101 789-908 94-197 (228)
24 cd02673 Peptidase_C19Q A subfa 100.0 6E-37 1.3E-41 326.5 19.0 104 789-908 111-219 (245)
25 PF00443 UCH: Ubiquitin carbox 100.0 1.2E-36 2.6E-41 327.4 20.6 148 339-504 1-151 (269)
26 KOG1866 Ubiquitin carboxyl-ter 100.0 4.1E-38 8.9E-43 354.1 6.5 274 335-908 91-389 (944)
27 COG5077 Ubiquitin carboxyl-ter 100.0 4.7E-36 1E-40 337.4 8.7 267 336-908 190-464 (1089)
28 cd02257 Peptidase_C19 Peptidas 100.0 7.2E-33 1.6E-37 293.8 20.5 117 788-908 99-227 (255)
29 COG5207 UBP14 Isopeptidase T [ 100.0 2.6E-33 5.7E-38 303.8 16.8 146 339-517 303-453 (749)
30 cd02672 Peptidase_C19P A subfa 100.0 3.9E-33 8.4E-38 301.1 13.4 116 788-908 117-251 (268)
31 KOG4598 Putative ubiquitin-spe 100.0 2.7E-34 6E-39 319.3 2.2 119 789-908 215-403 (1203)
32 KOG1863 Ubiquitin carboxyl-ter 100.0 7.5E-32 1.6E-36 338.3 11.6 269 337-908 167-444 (1093)
33 KOG1864 Ubiquitin-specific pro 100.0 7.9E-30 1.7E-34 297.2 12.8 303 336-908 229-544 (587)
34 cd02670 Peptidase_C19N A subfa 99.9 1E-27 2.3E-32 253.1 14.1 92 787-902 79-192 (241)
35 PF13423 UCH_1: Ubiquitin carb 99.9 1.9E-26 4.1E-31 254.2 22.5 279 340-909 1-292 (295)
36 KOG1872 Ubiquitin-specific pro 99.9 5.5E-27 1.2E-31 257.0 10.4 244 209-519 13-265 (473)
37 KOG2026 Spindle pole body prot 99.9 1.5E-23 3.2E-28 223.1 19.6 155 332-521 127-288 (442)
38 KOG1871 Ubiquitin-specific pro 99.9 8.9E-24 1.9E-28 226.0 10.5 113 790-907 267-389 (420)
39 PF06337 DUSP: DUSP domain; I 99.7 3.5E-18 7.5E-23 157.2 7.2 80 95-180 2-93 (99)
40 smart00695 DUSP Domain in ubiq 99.7 8.5E-17 1.8E-21 144.0 9.0 77 90-180 2-79 (86)
41 PF14836 Ubiquitin_3: Ubiquiti 99.5 3.6E-14 7.7E-19 124.1 8.2 83 200-283 2-88 (88)
42 KOG1275 PAB-dependent poly(A) 98.7 6.6E-08 1.4E-12 113.8 10.5 100 809-909 702-834 (1118)
43 PF14533 USP7_C2: Ubiquitin-sp 98.0 4.2E-05 9E-10 80.4 12.0 143 511-665 3-157 (213)
44 cd01796 DDI1_N DNA damage indu 96.8 0.0036 7.8E-08 53.8 6.6 62 207-273 8-69 (71)
45 KOG1864 Ubiquitin-specific pro 96.8 0.0023 5.1E-08 76.3 7.0 104 342-446 34-152 (587)
46 cd01807 GDX_N ubiquitin-like d 96.6 0.0074 1.6E-07 52.2 7.3 65 206-276 8-72 (74)
47 cd01812 BAG1_N Ubiquitin-like 96.6 0.006 1.3E-07 52.1 6.6 63 206-274 7-69 (71)
48 cd01813 UBP_N UBP ubiquitin pr 96.6 0.0067 1.4E-07 52.6 6.6 66 206-274 7-72 (74)
49 PTZ00044 ubiquitin; Provisiona 96.5 0.0099 2.1E-07 51.6 7.7 65 206-276 8-72 (76)
50 cd01795 USP48_C USP ubiquitin- 96.3 0.008 1.7E-07 53.9 5.8 62 210-276 16-77 (107)
51 cd01810 ISG15_repeat2 ISG15 ub 96.3 0.018 3.9E-07 49.8 7.6 66 205-276 5-70 (74)
52 cd01794 DC_UbP_C dendritic cel 96.2 0.016 3.5E-07 49.6 7.0 63 206-274 6-68 (70)
53 PF14560 Ubiquitin_2: Ubiquiti 96.2 0.029 6.4E-07 50.1 8.9 66 209-274 14-81 (87)
54 PF00240 ubiquitin: Ubiquitin 96.2 0.021 4.5E-07 48.5 7.5 64 207-276 4-67 (69)
55 cd01806 Nedd8 Nebb8-like ubiq 96.2 0.024 5.2E-07 48.9 8.0 65 206-276 8-72 (76)
56 cd01799 Hoil1_N Ubiquitin-like 96.1 0.02 4.3E-07 49.8 7.1 61 208-274 12-73 (75)
57 cd01800 SF3a120_C Ubiquitin-li 96.0 0.021 4.4E-07 49.8 6.7 63 208-276 7-69 (76)
58 cd01803 Ubiquitin Ubiquitin. U 96.0 0.029 6.3E-07 48.4 7.5 66 206-277 8-73 (76)
59 cd01793 Fubi Fubi ubiquitin-li 95.9 0.031 6.7E-07 48.3 7.5 62 209-276 9-70 (74)
60 cd01805 RAD23_N Ubiquitin-like 95.9 0.036 7.8E-07 48.1 7.8 64 207-276 9-74 (77)
61 cd01798 parkin_N amino-termina 95.8 0.03 6.6E-07 47.8 7.0 63 206-274 6-68 (70)
62 cd01797 NIRF_N amino-terminal 95.8 0.033 7.3E-07 48.8 7.2 62 211-278 14-76 (78)
63 cd01804 midnolin_N Ubiquitin-l 95.7 0.061 1.3E-06 47.1 8.4 63 207-276 10-72 (78)
64 cd01802 AN1_N ubiquitin-like d 95.6 0.069 1.5E-06 49.4 8.8 66 206-277 35-100 (103)
65 cd01809 Scythe_N Ubiquitin-lik 95.6 0.048 1.1E-06 46.5 7.3 63 206-274 8-70 (72)
66 cd01792 ISG15_repeat1 ISG15 ub 95.4 0.055 1.2E-06 47.6 7.0 67 206-276 10-76 (80)
67 cd01791 Ubl5 UBL5 ubiquitin-li 95.2 0.096 2.1E-06 45.3 7.9 62 207-274 10-71 (73)
68 cd01808 hPLIC_N Ubiquitin-like 95.2 0.066 1.4E-06 45.8 7.0 58 211-274 12-69 (71)
69 cd01763 Sumo Small ubiquitin-r 95.0 0.15 3.2E-06 45.6 8.8 72 198-276 12-83 (87)
70 cd01789 Alp11_N Ubiquitin-like 94.6 0.23 4.9E-06 44.2 8.9 66 209-274 13-79 (84)
71 cd01769 UBL Ubiquitin-like dom 93.7 0.21 4.5E-06 41.9 6.5 62 207-274 6-67 (69)
72 smart00213 UBQ Ubiquitin homol 93.7 0.17 3.7E-06 41.7 5.9 54 209-268 10-63 (64)
73 PF11543 UN_NPL4: Nuclear pore 92.2 0.28 6.1E-06 43.2 5.2 64 209-274 14-78 (80)
74 PF11976 Rad60-SLD: Ubiquitin- 92.2 0.52 1.1E-05 40.2 6.9 63 205-273 7-70 (72)
75 PF00789 UBX: UBX domain; Int 92.1 0.94 2E-05 39.8 8.6 67 205-274 13-81 (82)
76 TIGR00601 rad23 UV excision re 91.8 0.4 8.7E-06 54.6 7.3 65 206-276 8-75 (378)
77 cd01788 ElonginB Ubiquitin-lik 89.7 1.3 2.8E-05 41.2 7.1 71 206-282 9-87 (119)
78 smart00166 UBX Domain present 89.5 1.8 3.8E-05 38.0 7.8 67 205-274 11-79 (80)
79 cd01774 Faf1_like2_UBX Faf1 ik 86.5 4.2 9.2E-05 36.2 8.3 69 205-274 11-83 (85)
80 cd01773 Faf1_like1_UBX Faf1 ik 85.4 6 0.00013 35.0 8.5 71 204-276 11-81 (82)
81 cd01771 Faf1_UBX Faf1 UBX doma 84.7 6.3 0.00014 34.7 8.4 70 205-276 11-80 (80)
82 cd01767 UBX UBX (ubiquitin reg 84.5 6.1 0.00013 34.3 8.3 65 205-274 9-75 (77)
83 cd01790 Herp_N Homocysteine-re 83.7 3.1 6.8E-05 36.5 6.0 67 198-271 2-74 (79)
84 cd01815 BMSC_UbP_N Ubiquitin-l 81.7 2.4 5.2E-05 36.8 4.4 52 217-274 19-73 (75)
85 KOG0010 Ubiquitin-like protein 79.6 4.1 8.9E-05 47.1 6.7 70 201-276 17-86 (493)
86 PLN02560 enoyl-CoA reductase 78.9 6.2 0.00014 43.9 7.8 62 212-274 17-81 (308)
87 PF02196 RBD: Raf-like Ras-bin 78.3 14 0.0003 31.8 8.0 67 201-275 4-70 (71)
88 cd01772 SAKS1_UBX SAKS1-like U 78.0 11 0.00025 32.9 7.7 68 205-274 11-78 (79)
89 PF05408 Peptidase_C28: Foot-a 77.6 1.2 2.7E-05 44.7 1.6 25 336-360 30-54 (193)
90 cd01770 p47_UBX p47-like ubiqu 75.8 13 0.00027 32.7 7.3 61 205-268 11-72 (79)
91 COG3478 Predicted nucleic-acid 75.1 2.7 5.8E-05 34.8 2.6 37 806-842 2-40 (68)
92 PF15499 Peptidase_C98: Ubiqui 74.6 2.4 5.3E-05 45.0 2.9 71 810-903 172-242 (275)
93 cd00196 UBQ Ubiquitin-like pro 73.3 10 0.00022 29.5 5.9 62 207-274 6-67 (69)
94 cd01760 RBD Ubiquitin-like dom 72.4 19 0.00042 31.0 7.4 66 205-275 6-71 (72)
95 smart00455 RBD Raf-like Ras-bi 72.1 21 0.00045 30.6 7.5 64 205-275 6-69 (70)
96 KOG4495 RNA polymerase II tran 71.9 6.5 0.00014 35.3 4.4 57 206-266 9-65 (110)
97 cd01801 Tsc13_N Ubiquitin-like 69.9 11 0.00023 32.8 5.5 54 216-273 20-74 (77)
98 cd01817 RGS12_RBD Ubiquitin do 69.9 24 0.00052 30.5 7.3 65 205-276 6-70 (73)
99 KOG0005 Ubiquitin-like protein 69.6 5.1 0.00011 32.7 3.0 57 209-271 11-67 (70)
100 PF11470 TUG-UBL1: GLUT4 regul 66.6 15 0.00033 31.0 5.4 38 205-242 3-40 (65)
101 cd06406 PB1_P67 A PB1 domain i 62.7 23 0.00049 31.2 5.9 46 198-246 3-48 (80)
102 PF08715 Viral_protease: Papai 60.6 19 0.00042 40.2 6.4 80 335-443 98-178 (320)
103 KOG1769 Ubiquitin-like protein 58.3 54 0.0012 30.0 7.6 70 198-274 21-90 (99)
104 PF08817 YukD: WXG100 protein 53.9 41 0.00088 29.3 6.2 71 201-273 4-78 (79)
105 cd01768 RA RA (Ras-associating 47.1 1.2E+02 0.0026 26.6 8.2 52 541-592 14-67 (87)
106 cd01814 NTGP5 Ubiquitin-like N 46.4 44 0.00095 31.4 5.3 53 206-264 12-72 (113)
107 PF14533 USP7_C2: Ubiquitin-sp 44.6 76 0.0016 33.4 7.6 63 209-274 34-99 (213)
108 PF14560 Ubiquitin_2: Ubiquiti 44.4 1.6E+02 0.0034 26.0 8.6 64 540-603 14-80 (87)
109 cd01777 SNX27_RA Ubiquitin dom 42.9 45 0.00098 29.8 4.6 42 197-239 1-42 (87)
110 cd01811 OASL_repeat1 2'-5' oli 41.8 91 0.002 27.1 6.0 63 209-273 11-73 (80)
111 KOG4248 Ubiquitin-like protein 41.3 36 0.00078 43.1 5.1 64 206-276 10-73 (1143)
112 PF13881 Rad60-SLD_2: Ubiquiti 40.7 1.9E+02 0.004 27.3 8.7 72 198-275 3-85 (111)
113 KOG0004 Ubiquitin/40S ribosoma 39.0 46 0.001 32.9 4.5 61 210-276 12-72 (156)
114 PF02017 CIDE-N: CIDE-N domain 37.2 93 0.002 27.4 5.6 58 218-282 20-77 (78)
115 PF00788 RA: Ras association ( 34.5 1.7E+02 0.0038 25.5 7.4 44 199-242 4-52 (93)
116 smart00314 RA Ras association 34.0 2.6E+02 0.0056 24.6 8.4 52 541-592 17-69 (90)
117 cd01768 RA RA (Ras-associating 31.6 1.6E+02 0.0035 25.8 6.6 40 208-247 12-53 (87)
118 KOG0011 Nucleotide excision re 31.6 86 0.0019 34.9 5.6 66 207-278 9-76 (340)
119 PF09379 FERM_N: FERM N-termin 31.6 2.7E+02 0.0059 23.7 7.9 37 206-242 4-41 (80)
120 COG5227 SMT3 Ubiquitin-like pr 30.9 1.4E+02 0.0031 26.7 5.7 59 206-270 32-90 (103)
121 cd01615 CIDE_N CIDE_N domain, 30.3 1.2E+02 0.0025 26.8 5.1 59 217-282 19-77 (78)
122 cd01787 GRB7_RA RA (RAS-associ 28.6 2.4E+02 0.0053 25.2 6.9 59 526-588 3-62 (85)
123 PF15499 Peptidase_C98: Ubiqui 28.0 2.4E+02 0.0052 30.5 7.9 28 343-370 6-33 (275)
124 smart00266 CAD Domains present 28.0 1.3E+02 0.0029 26.1 5.0 29 217-245 17-45 (74)
125 KOG1871 Ubiquitin-specific pro 27.8 29 0.00063 39.3 1.2 34 335-368 174-207 (420)
126 PF00788 RA: Ras association ( 27.7 3.1E+02 0.0068 23.8 7.9 61 528-588 5-67 (93)
127 smart00666 PB1 PB1 domain. Pho 27.1 2.2E+02 0.0048 24.4 6.6 42 199-242 3-44 (81)
128 PF12436 USP7_ICP0_bdg: ICP0-b 26.5 79 0.0017 34.1 4.3 63 212-275 88-151 (249)
129 PF09855 DUF2082: Nucleic-acid 26.3 59 0.0013 27.4 2.5 34 809-842 1-36 (64)
130 smart00314 RA Ras association 25.6 3.2E+02 0.0069 24.0 7.5 39 207-245 14-54 (90)
131 KOG1867 Ubiquitin-specific pro 25.5 28 0.00061 41.4 0.7 103 336-443 74-181 (492)
132 cd06535 CIDE_N_CAD CIDE_N doma 25.3 1.5E+02 0.0033 25.9 4.9 58 217-282 19-76 (77)
133 cd01816 Raf_RBD Ubiquitin doma 24.9 4.5E+02 0.0097 22.9 7.5 67 206-275 7-73 (74)
134 PF12436 USP7_ICP0_bdg: ICP0-b 24.8 1.3E+02 0.0027 32.5 5.5 49 198-246 177-227 (249)
135 smart00295 B41 Band 4.1 homolo 24.3 4.6E+02 0.01 26.5 9.5 49 197-246 3-52 (207)
136 cd01779 Myosin_IXb_RA ubitquit 23.1 5.4E+02 0.012 23.5 7.9 58 528-585 13-70 (105)
137 cd01791 Ubl5 UBL5 ubiquitin-li 22.9 4.6E+02 0.01 22.5 7.5 67 527-604 3-71 (73)
138 PF00240 ubiquitin: Ubiquitin 22.4 3.5E+02 0.0076 22.2 6.7 39 541-582 7-45 (69)
139 cd01804 midnolin_N Ubiquitin-l 21.7 3.2E+02 0.007 23.6 6.5 40 526-569 2-41 (78)
140 KOG1870 Ubiquitin C-terminal h 21.6 52 0.0011 42.0 2.0 104 786-895 480-583 (842)
141 PF14205 Cys_rich_KTR: Cystein 21.4 42 0.0009 27.2 0.7 12 807-818 27-38 (55)
142 cd01782 AF6_RA_repeat1 Ubiquit 21.1 5.1E+02 0.011 24.3 7.6 72 516-587 11-87 (112)
143 cd01775 CYR1_RA Ubiquitin doma 20.2 4.8E+02 0.01 24.0 7.2 48 197-245 2-50 (97)
144 PF13019 Telomere_Sde2: Telome 20.1 5.2E+02 0.011 26.1 8.2 54 527-580 2-55 (162)
No 1
>COG5560 UBP12 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-109 Score=914.38 Aligned_cols=711 Identities=31% Similarity=0.483 Sum_probs=536.4
Q ss_pred EEEEEcchhHHHHHHhhcccCCCccCCCCCCCCChhhhhhhhhcccCCCCCCCcCCCCcCCCCeEEcCHHHHHHHHHHcC
Q 002523 96 KVYLVPYRWWKESQILLAEKVGGVLYEVLSNDDNTDLEILLHLKKKEGSVDSDCGEGGVSVREYALVPEGMWLRALKWHN 175 (912)
Q Consensus 96 ~~yli~~~W~~~w~~~v~~~~~g~~~~~pg~IdNs~L~~~~~~~~~~~~~~~~lk~~l~e~~Dy~~Vp~~~W~~l~~wYG 175 (912)
..|+|++.|+....++...+. . .||||+--.|+ |-+...+|..+.++.||.+|++.+|+.|++|||
T Consensus 46 ~a~i~~y~wyeg~fd~~~~dg----~-~pgPi~q~~i~---------d~e~e~lk~sl~e~idysiis~~vw~llvrwyG 111 (823)
T COG5560 46 YAVIFAYAWYEGMFDRASCDG----G-SPGPIVQGPIV---------DFEPESLKKSLREGIDYSIISGAVWQLLVRWYG 111 (823)
T ss_pred eEEEEehHHhhhhcccccccC----C-CCCCCCccccc---------ccChhhcchhhhcCCCeeeechHHHHHHHHHhc
Confidence 899999999999888776654 2 39999998887 456789999999999999999999999999999
Q ss_pred -CCcce-EeccCC-CCCCcceeeeeeEEEEeeecC---------CCeEEEEEccCCcHHHHHHHHHhhcCCCCCceEEEE
Q 002523 176 -DSKAA-VKDFGS-SFAADEQDVFPLQIRLSVSQE---------TNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWD 243 (912)
Q Consensus 176 -g~p~I-vi~~~~-~~~~~~vEvYPl~lkl~~~~d---------~~~~~i~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~ 243 (912)
.|+.+ ++..+. +..+..||+||+.+++....+ ...+.+.+|...|+.++.+++..+|-.|.++.|||+
T Consensus 112 l~gl~~pr~tvll~ses~p~ve~yp~~f~lh~Lf~ing~~~n~gh~p~~~s~ss~~tlrdl~e~vmnaf~~psD~FRLw~ 191 (823)
T COG5560 112 LAGLITPRITVLLPSESAPEVESYPVVFKLHWLFSINGSLINLGHDPVPHSASSHGTLRDLSERVMNAFVDPSDDFRLWD 191 (823)
T ss_pred ccccceeeEEeccccccCCccccccceEEEEEEEeccchhhhcCCCcceeeccccchHHHHHHHHHHHhcCcccceeEEE
Confidence 45555 333332 444558999999999876543 135678999999999999999999999999999999
Q ss_pred ecCCccccccccccccccccc--cCCCC---------------eEEEEEe-ecCcccCcCCccccccccccccccccCCC
Q 002523 244 FSGQTTQFLMNDRVTMSDDFS--AKPGE---------------EVFLQLQ-VHGFSDSVGETNDEMAEHYKIIDSICNGS 305 (912)
Q Consensus 244 ~~~~~~~~lL~d~~~tL~d~~--l~~~q---------------~IllE~k-~dG~W~~~~~~~~~~~~~~~~~~~~~~~~ 305 (912)
+...+....+.+.. +..+.. ...++ ..+++.. .++.|+...-
T Consensus 192 v~~~~~~~r~~~~s-~f~~~~~~a~~~~~l~~~t~~el~~d~s~lll~kit~np~wlvdsi------------------- 251 (823)
T COG5560 192 VVPEIMGLRLGLDS-FFRRYRVLASDGRVLHPLTRLELFEDRSVLLLSKITRNPDWLVDSI------------------- 251 (823)
T ss_pred ecCCcccccccCHH-HHhhcchhccchhhhcccHHHHhccchhhhHHhhhccCCccceeee-------------------
Confidence 87554332221111 000100 01111 1111111 2233332100
Q ss_pred ccccCCCCCCCccccCCCccccCCCCCccccccccccccCCCcchHHHHHHHHhCChHHHHHHHh-hcccccccCCCCCC
Q 002523 306 VKINGSNDNLNSYITSSNSVRRGSGNGGVCLLGLTGLRNLGNTCFMNSAIQCLAHTPEIVDYFLG-DYQKEINYENPLGL 384 (912)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~ll~-~~~~~~~~~n~l~~ 384 (912)
...+|... .+ ..|.+||.|+||||||||+||||.|+++||+||+. .|..++|..||+|+
T Consensus 252 -------------~~~~n~si-----nk--e~GtcGL~NlGNTCyMNSaLQCL~ht~eLrdyFlsdeye~~iNe~Nplgm 311 (823)
T COG5560 252 -------------VDDHNRSI-----NK--EAGTCGLRNLGNTCYMNSALQCLMHTWELRDYFLSDEYEESINEENPLGM 311 (823)
T ss_pred -------------cchhhhhH-----Hh--hccccceecCCcceecchHHHHHhccHHHHHHhhhhhhHhhhcccCccch
Confidence 00011111 11 14999999999999999999999999999999996 49999999999999
Q ss_pred chHHHHHHHHHHHHhcCCCCCccChHHHHHHHhhhCCCCCCCCcCCHHHHHHHHHHHHHHHhhhcccCCccccccCCCCC
Q 002523 385 NGELALAFGDLLRKLWAPGGIPVAPRMFKLKLANFAPQFSGYNQHDSQEFLAFLLDGLHEDLNRVKCKPYLEAKDAEGQP 464 (912)
Q Consensus 385 ~~~l~~~l~~L~~~l~~~~~~~i~P~~~~~~l~~~~~~F~~~~QqDA~EfL~~LLd~L~eel~~~~~k~~~~~~d~~~~~ 464 (912)
.|.+|.+|+.|+++++.++..+++|..|+..|+.++..|.||.|||+|||+++|||+|||+|||+.+|||.+..|-....
T Consensus 312 hg~vAsayadLik~ly~~~~haf~Ps~fK~tIG~fn~~fsGy~QQDSqEFiaflLDgLHEdLnRI~~KpytskPdL~~~d 391 (823)
T COG5560 312 HGSVASAYADLIKQLYDGNLHAFTPSGFKKTIGSFNEEFSGYDQQDSQEFIAFLLDGLHEDLNRIIKKPYTSKPDLSPGD 391 (823)
T ss_pred hhhHHHHHHHHHHHHhCccccccChHHHHHHHhhhHHHhcCccchhHHHHHHHHHHHHHHHHHHhhcCcccCCCCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999887643322
Q ss_pred ---hHHHHHHHHHhhhcCCCccccccccEEEEEEEecCCCCCeeeeeecceeEEecCCCCCccceEEEEEcCCCCCCCee
Q 002523 465 ---EEEVAEEYWRNHRARNDSIIVDLCQGQYRSMLVCPVCNKVSVTFDPLMYLSLPIPSTTMRTMTVTVLSTDGSTMPAP 541 (912)
Q Consensus 465 ---~~~~a~e~w~~~~~~~~SiI~~lF~G~~~s~l~C~~C~~~s~~~e~F~~LsL~Ip~~~~~~~~v~~~~~d~~~~p~~ 541 (912)
-+..|+++|..|.+||+|+|+++|+|.++|+++|+.|+.+|++||||++|+||||....|..+|++||.+|...|
T Consensus 392 ~~~vKk~a~ecW~~H~kRNdSiItdLFqgmyKSTL~Cp~C~~vsitfDPfmdlTLPLPvs~vw~htiv~fp~~g~~~p-- 469 (823)
T COG5560 392 DVVVKKKAKECWWEHLKRNDSIITDLFQGMYKSTLTCPGCGSVSITFDPFMDLTLPLPVSMVWKHTIVVFPESGRRQP-- 469 (823)
T ss_pred hHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhceeeccCcCceeeeecchhhccccCchhhcccccEEEECCCCCCCc--
Confidence 255799999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred eEEEeCCCCCHHHHHHHHHhhcCCCCCCcEEEEEEecceeeeeccCCcc-cccccCCCCcEEEEEcCCCCCCCceEEEee
Q 002523 542 FTVTVPKYGRFQDLIDALSTKCFLRNHEKLLVAEIYRSKIFRVLDEPSD-LLGLIRDEDKLVAYRLPKDSETPSLVLFMH 620 (912)
Q Consensus 542 ~~v~v~k~~~~~~l~~~l~~~~~~~~~~~l~~~ei~~~~i~~~~~~~~~-~~~~i~~~d~i~~ye~~~~~~~~~~~~~~~ 620 (912)
..+++.+.+++.+|++.+....|+.....+.+.++|.+++++.++...+ .+..|.+.|.+|.|+ ..++...++++|
T Consensus 470 l~iel~~sSt~~~lk~lv~~~~gk~gc~ei~v~~iy~g~~y~~l~~~dk~ll~~I~~~d~vylYe---~~~ngi~vpvvh 546 (823)
T COG5560 470 LKIELDASSTIRGLKKLVDAEYGKLGCFEIKVMCIYYGGNYNMLEPADKVLLQDIPQTDFVYLYE---TNDNGIEVPVVH 546 (823)
T ss_pred eEEEEeccchHHHHHHHHHHHhccCCccceeEEEEEeccchhhcchhhHHHHhhcCccceEEEee---cCCCCeEEEEEe
Confidence 5677888899999999888888877777899999999999999997666 457799999999999 344457899999
Q ss_pred ecccccccccccccceeeeccce-EEEc-CCCCChhHHHHHHHHhcCCccC-CCCCCCCcccccCCCCCCCccccccccc
Q 002523 621 ERKEESCHLGRLSLEWKIFGTPL-VGRL-SDLTNGSDIRKLFLKLLDPFLM-PVGDDSDFSDEAGKIDNGDSIVEDVTSS 697 (912)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~fg~P~-~~~v-~~~~~~~~l~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 697 (912)
.+.++ .+.+..+||.|+ -..+ ....-.++|-+...+++....+ +++-...+.+.. -...+.+
T Consensus 547 ~~~~~------gYks~rlFg~pflqlnv~~~~~i~~kLvkE~~ell~~v~~k~tdvd~~~~q~~-l~r~es~-------- 611 (823)
T COG5560 547 LRIEK------GYKSKRLFGDPFLQLNVLIKASIYDKLVKEFEELLVLVEMKKTDVDLVSEQVR-LLREESS-------- 611 (823)
T ss_pred ccccc------cccchhhhCCcceEEEeecchhhHHHHHHHHHHHHHHHhhcchhhhhhhhhcc-chhcccC--------
Confidence 97664 266788999996 2333 3333333443322222221111 121111111100 0000000
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCceeEEEecCCCCcccccCCCCCcCCCCCCeEEEEecChhhHhhhhhhhhhhhhhcccc
Q 002523 698 RVSDNDAVSDSSEAGDEPHLSDDFQFYRLDSIRPTEIKMNEPLSISDFAKPLTIHVQWAEKMIEKYDTCLLSSLMEVCKP 777 (912)
Q Consensus 698 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~ 777 (912)
+.. . |.+..+......+..+.+...+.+..+.|.+.|.+......+.. ..+.-..+.
T Consensus 612 p~~--------w-------------l~l~teid~kree~veeE~~~n~nd~vvi~cew~ek~y~~lFsy--~~lw~~~ei 668 (823)
T COG5560 612 PSS--------W-------------LKLETEIDTKREEQVEEEGQMNFNDAVVISCEWEEKRYLSLFSY--DPLWTIREI 668 (823)
T ss_pred cch--------h-------------hhhhhhccchhhhhhhhhhccCCCcceEEeeeccccchhhhhcC--CccchhHHh
Confidence 000 0 00000000000000001111233556789999999876543220 000000011
Q ss_pred ccccCCCCCccCHHHHHHHhhCcccCCCCCCCCCCCcccccceEEEEEeecCCceeEEEEeeeEEcCceecccceEEecC
Q 002523 778 QLFTRMPPESVSLYKCLEAFLKEEPLGPEDMWYCPRCKKHWQASKKLDLWRSPDILVIHLKRFSFSRYFKSKLDTYVDFP 857 (912)
Q Consensus 778 ~~~~~~~~~~isL~dCL~~F~~~E~L~~~d~wyC~~Ck~~~~AtKk~~l~~lP~iLiIHLKRF~~~~~~~~Ki~~~V~FP 857 (912)
+. ....+||+|||.+|.++|+|+..|.||||.||++++|+|+++||++|.|||||||||++.+.+++||++.|+||
T Consensus 669 ~~----~~rtiTL~dCl~eFskpEqLgl~DswyCpgCkefrqasKqmelwrlP~iLiihLkRFss~rsfrdKiddlVeyP 744 (823)
T COG5560 669 GA----AERTITLQDCLNEFSKPEQLGLSDSWYCPGCKEFRQASKQMELWRLPMILIIHLKRFSSVRSFRDKIDDLVEYP 744 (823)
T ss_pred hh----ccCCCcHHHHHHHhccHhhcCCcccccCCchHhhhhhhhhhhhhcCChheeeehhhhhhcccchhhhhhhhccc
Confidence 11 13689999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcccccCCCCCCccEEEEEEEEeeecCCCceEEEEEEe---CCeEEEE
Q 002523 858 IDDLDLSNYVCCKNSQLSNRYVLYAISNHYGGMGGGHYTAFVDV---SCVYSFH 908 (912)
Q Consensus 858 i~~LDls~~v~~~~~~~~~~YdL~AVinH~G~l~gGHYtAy~k~---~~~~~f~ 908 (912)
|.+|||+.|+..... ...+|+||||.||||++||||||||+|+ ++||.|+
T Consensus 745 iddldLs~~~~~~~~-p~liydlyavDNHygglsgGHYtAyarn~~n~~wy~fd 797 (823)
T COG5560 745 IDDLDLSGVEYMVDD-PRLIYDLYAVDNHYGGLSGGHYTAYARNFANNGWYLFD 797 (823)
T ss_pred cccccccceEEeecC-cceEEEeeeccccccccCCcceeeeeecccCCceEEec
Confidence 999999999877655 5599999999999999999999999998 3688775
No 2
>KOG1870 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.4e-89 Score=832.87 Aligned_cols=785 Identities=33% Similarity=0.474 Sum_probs=609.7
Q ss_pred cCCCCCCCCccEEEEEcchhHHHHHHhhcccCC----CccCC--CCCCCCChhhhhhhhhcccCCCCCCCcCCCCcCCCC
Q 002523 85 SRGLFDDDDRQKVYLVPYRWWKESQILLAEKVG----GVLYE--VLSNDDNTDLEILLHLKKKEGSVDSDCGEGGVSVRE 158 (912)
Q Consensus 85 ~~~~~~~~~~~~~yli~~~W~~~w~~~v~~~~~----g~~~~--~pg~IdNs~L~~~~~~~~~~~~~~~~lk~~l~e~~D 158 (912)
.++....++ .+++|..+|+.+|++||+.... +.+.. .++++||...+ + ++....++|..++++.|
T Consensus 4 ~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~k~~~~~n~~~~------~-~~~~~~~~~~~~~e~~~ 74 (842)
T KOG1870|consen 4 SRRTCKSGK--SHGLILWRCLEQWQSYVGLESYHEISTIHSQAPKHGLTDNLTFL------R-CDACDKTLRVSLLEGLD 74 (842)
T ss_pred ccccccccc--ccchhhhhhhhhccccccceeeeccccccccccccccccCccch------h-HhhhhhHHHhhhccccc
Confidence 456678889 9999999999999999998432 22222 28899999999 4 33333399999999999
Q ss_pred eEEcCHHHHHHHHHHc-CCCcce---EeccCCCCCCcceeeeeeEEEEeeecCCCeEEEEEccCCcHHHHHHHHHhhcCC
Q 002523 159 YALVPEGMWLRALKWH-NDSKAA---VKDFGSSFAADEQDVFPLQIRLSVSQETNSLLVKISLEDNKVDLYKRACNLFIS 234 (912)
Q Consensus 159 y~~Vp~~~W~~l~~wY-Gg~p~I---vi~~~~~~~~~~vEvYPl~lkl~~~~d~~~~~i~~Sk~~ti~eL~~~v~~lf~i 234 (912)
|.++|+++|+.+..|| .|++++ |+..+.....+.||+||..+.++.+.+.....+..+...|+.++...++..+.+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~ 154 (842)
T KOG1870|consen 75 YTISPRSVQKLLVEWFKSGGAAILRAVFDEGEIERDDFVELYPRGLTLLKNSGNSRTSLALQADSTCPPLTSYFLESGGL 154 (842)
T ss_pred cccCCHHHHhhccccccCCCccchhhhhcccccccCCcccccchhhhhccCCCCccceeccccccCccHHHHHHHHhcCC
Confidence 9999999999999999 467777 777777666699999999999988776544448899999999999999999999
Q ss_pred CCCceEEEEecCCcccccccccc-ccccccccCCCCeEEEEEe-ecCcccCcCCccccccccccccccccCCCccccCCC
Q 002523 235 VSEMLYIWDFSGQTTQFLMNDRV-TMSDDFSAKPGEEVFLQLQ-VHGFSDSVGETNDEMAEHYKIIDSICNGSVKINGSN 312 (912)
Q Consensus 235 ~~e~~RLW~~~~~~~~~lL~d~~-~tL~d~~l~~~q~IllE~k-~dG~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (912)
+.+..+||..+......++.... .++..+.+..++.+++|+. .+++|+++.+.......+.. .....++...++.
T Consensus 155 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~-- 231 (842)
T KOG1870|consen 155 PRTKFAIWASYNEKYLSLWYKSDPGKLVPTVLFQGRKMVLEVFRKFASQPSDMTLRCWMDWLSE-RDPDASGTKETRV-- 231 (842)
T ss_pred CcccchhhhhhhHhhhcccccccccccccccccccceEEeeeccccccchhhhchhhccccccc-cccccCCCccccc--
Confidence 99999999998877666665544 7788889999999999999 79999986321100000000 0000111111110
Q ss_pred CCCCccccCCCccccCCCCCccccccccccccCCCcchHHHHHHHHhCChHHHHHHHhh-cccccccCCCCCCchHHHHH
Q 002523 313 DNLNSYITSSNSVRRGSGNGGVCLLGLTGLRNLGNTCFMNSAIQCLAHTPEIVDYFLGD-YQKEINYENPLGLNGELALA 391 (912)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~ll~~-~~~~~~~~n~l~~~~~l~~~ 391 (912)
.+ ..........+|.+||.|+||||||||.+|||.+.+++++||+.. +..+++..+++++.+.++.+
T Consensus 232 ---------~~---~~~~~~~~~~~g~~Gl~nlGntcfmns~~q~l~~~~~l~e~f~~~~~~~ein~~n~~~~~~~~~~~ 299 (842)
T KOG1870|consen 232 ---------DF---PSEEISSPSERGETGLSNLGNTCFMNSALQCLSNTPELLEYFLSDLYDREINESNPLGSAGEVASS 299 (842)
T ss_pred ---------cc---ccccccCCCcccccccccCCccccchhhhhhhccCcchhHHHHhHhhHhhhcccCCCcccceechh
Confidence 00 000002345689999999999999999999999999999999965 55569999999999999999
Q ss_pred HHHHHHHhcCCCCCccChHHHHHHHhhhCCCCCCCCcCCHHHHHHHHHHHHHHHhhhcccCCccccccCCCCChHHHHHH
Q 002523 392 FGDLLRKLWAPGGIPVAPRMFKLKLANFAPQFSGYNQHDSQEFLAFLLDGLHEDLNRVKCKPYLEAKDAEGQPEEEVAEE 471 (912)
Q Consensus 392 l~~L~~~l~~~~~~~i~P~~~~~~l~~~~~~F~~~~QqDA~EfL~~LLd~L~eel~~~~~k~~~~~~d~~~~~~~~~a~e 471 (912)
+..++..+|+.....++|..++..++.+.++|.|+.|||+|||+.+|||+||+++++...+||++.+|.+++++.+.+.+
T Consensus 300 ~~~l~~~~~s~~~~~v~~~~~~~~~~~~a~~~~g~~q~d~~E~lafllDglhedl~~~~~kpy~~~~d~~~rp~~~~~~~ 379 (842)
T KOG1870|consen 300 FADLIKQLWSGNKSAVAPTSFRTSLASFASEFSGYGQQDSQELLAFLLDGLHEDLNRVSSKPYVEGKDSDLRPDQEVAAE 379 (842)
T ss_pred hhhHHHHhccCCccccCchhhhhhhhhccccccCcccccchhhhhHHhhhhhHHhhccCCcCcccccccccchhhhhhHH
Confidence 99999999998887899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcCCCccccccccEEEEEEEecCCCCCeeeeeecceeEEecCCCCCccceEEEEEcCCCCCCCeeeEEEeCCCCC
Q 002523 472 YWRNHRARNDSIIVDLCQGQYRSMLVCPVCNKVSVTFDPLMYLSLPIPSTTMRTMTVTVLSTDGSTMPAPFTVTVPKYGR 551 (912)
Q Consensus 472 ~w~~~~~~~~SiI~~lF~G~~~s~l~C~~C~~~s~~~e~F~~LsL~Ip~~~~~~~~v~~~~~d~~~~p~~~~v~v~k~~~ 551 (912)
.|..|..++.|+|+++|.|+++++++|+.|+++++++|+|.+|+||+|....+.+++++++.++...|.++.+.+.++++
T Consensus 380 ~~~~~~~~~~s~i~d~~~~~~~S~~~c~~C~~~svt~d~f~~Lslp~p~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 459 (842)
T KOG1870|consen 380 VWDYHLKRNRSVIVDLFDGTYKSTLQCPTCGKVSVTFDPFGYLSLPLPGKEIQKLEVTVPHGDGFRKPGALGVSVAKNGR 459 (842)
T ss_pred HHHhhhhhccceeeeeecceecccccCccCCCceEEeeccccccccCCCCcccceeEEEecCCCCCChhheeeeccccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCCcEEEEEEecceeeeeccCCcccccccCCCCcEEEEEcCCC-CCCCceEEE-eeecccc-ccc
Q 002523 552 FQDLIDALSTKCFLRNHEKLLVAEIYRSKIFRVLDEPSDLLGLIRDEDKLVAYRLPKD-SETPSLVLF-MHERKEE-SCH 628 (912)
Q Consensus 552 ~~~l~~~l~~~~~~~~~~~l~~~ei~~~~i~~~~~~~~~~~~~i~~~d~i~~ye~~~~-~~~~~~~~~-~~~~~~~-~~~ 628 (912)
+.++.++|.+.+++. .+.+.+++++++++++++......+..|...+.+++|+++.. .+...++.+ .+.+.+. ...
T Consensus 460 ~~~l~~~l~~~~~~~-~~~l~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 538 (842)
T KOG1870|consen 460 IRDLLEYLSRTVGLL-SWELKPVEILFDCFNKIFAADELKLDSIYSDEELFDYELGVLKVQGSIYAIIVVRFRSRLPRSK 538 (842)
T ss_pred HHHHHHHHHHHhccc-hhhcccceeccchhhhhhccCccccccccCCcceEEeecccccccccceEEEEEeecccccccc
Confidence 999999999999999 899999999999999999976677889999999999999852 222222222 2222222 112
Q ss_pred ccccccceeeeccceEEEc-C-CCCChhHHHHHHHHhcCCccCCCCCCCCcccccCCCCCCCcccccccccccCCCCC--
Q 002523 629 LGRLSLEWKIFGTPLVGRL-S-DLTNGSDIRKLFLKLLDPFLMPVGDDSDFSDEAGKIDNGDSIVEDVTSSRVSDNDA-- 704 (912)
Q Consensus 629 ~~~~~~~~~~fg~P~~~~v-~-~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 704 (912)
........+.||.|+++.+ . ...+..++...+..+.+++........ ..+.....+.... +...+...
T Consensus 539 ~~~~~~~~~~~g~p~~~~~~~~~~~t~~~l~~~~~~~~s~~~~~~~~~v-------~~~~~~~~~~~~~-e~~~~s~~~~ 610 (842)
T KOG1870|consen 539 GIRSHVSSKLFGLPLLVSVLSGAQSTEEDLLSVICHRTSRYSREPPLNV-------GYGVDDQSLKEVS-EQSAESSSSV 610 (842)
T ss_pred CcccCCCccccCCcceeeccCCCcccccchhhHHhhcccccCCcCcccc-------ccCCCcccccccc-cccccccccc
Confidence 3345567889999999999 4 567889999999888888763210000 0000000000000 00000000
Q ss_pred CCCCCCCCCCCCCCCceeEEEec-CCCCcccccCC----CCCcCCCCCCeEEEEecChhhHhhhhhhhhhhhhhcccccc
Q 002523 705 VSDSSEAGDEPHLSDDFQFYRLD-SIRPTEIKMNE----PLSISDFAKPLTIHVQWAEKMIEKYDTCLLSSLMEVCKPQL 779 (912)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~----~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~ 779 (912)
..++.+.+ .+. ....+.... +.....+.... .+. ......+.++++|.+....+++.......+++.+...
T Consensus 611 ~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~w~p~~~~~~~~~~~~~~~~~~~~~~ 686 (842)
T KOG1870|consen 611 SRDPSEDD-NSD--QDLSLECLSEESALRFFQSLESRNKSDS-EFEPGSTSIAVDWSPSAKYKYSSSLVSQPPEVEPRGA 686 (842)
T ss_pred cCCChhHh-ccc--cccchhhccCcccccccccccccccccc-cccCCCceeecccChhhcccccccccccccccccccc
Confidence 00000000 000 000000000 00000011111 111 1112223489999999887776655444555555444
Q ss_pred ccCCCC-CccCHHHHHHHhhCcccCCCCCCCCCCCcccccceEEEEEeecCCceeEEEEeeeEEcCceecccceEEecCC
Q 002523 780 FTRMPP-ESVSLYKCLEAFLKEEPLGPEDMWYCPRCKKHWQASKKLDLWRSPDILVIHLKRFSFSRYFKSKLDTYVDFPI 858 (912)
Q Consensus 780 ~~~~~~-~~isL~dCL~~F~~~E~L~~~d~wyC~~Ck~~~~AtKk~~l~~lP~iLiIHLKRF~~~~~~~~Ki~~~V~FPi 858 (912)
...+.. ..++|++||+.|+++|.|+.+++||||+|++|++|+|+++||+||+|||||||||+|.++++.|+++.|+||+
T Consensus 687 ~~~~~~~~~~sL~~cl~~F~~~E~L~~~~~w~C~~Cke~~~A~Kk~~lwrlPeiLiihLKrF~~~r~~~~k~~~~v~fPi 766 (842)
T KOG1870|consen 687 SRSKGSPAPNSLESCLELFSEPETLGKDDRWYCPQCKELRQATKKLDLWRLPEILIIHLKRFQYSRESSSKVKTKVEFPL 766 (842)
T ss_pred ccccCCCCcccHHHHHHhhcchhcCCccccccChHHHHHHHHhhhhhhhhCCceEEEEeecceeechhhhhhCccccCCC
Confidence 433332 6899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccccCCCCCCccEEEEEEEEeeecCCCceEEEEEEeC---CeEEEEE
Q 002523 859 DDLDLSNYVCCKNSQLSNRYVLYAISNHYGGMGGGHYTAFVDVS---CVYSFHI 909 (912)
Q Consensus 859 ~~LDls~~v~~~~~~~~~~YdL~AVinH~G~l~gGHYtAy~k~~---~~~~f~~ 909 (912)
..||+++|+.+++. .+|+||||+||||+|++||||||+|+. .||.|+=
T Consensus 767 ~~ld~s~~~~~~~~---~~Y~l~av~nHyG~l~~GHYta~~k~~~~~~w~~fdD 817 (842)
T KOG1870|consen 767 GSLDLSEFVVNKEQ---VLYDLYAVGNHYGQLSGGHYTAYAKNVGDGKWYLFDD 817 (842)
T ss_pred cCCCcchhhccCcc---ceeeeeeeecccCCcCCcchhhhhhcCCCCceEEecc
Confidence 99999999998754 899999999999999999999999994 5888763
No 3
>COG5533 UBP5 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-56 Score=459.42 Aligned_cols=308 Identities=33% Similarity=0.516 Sum_probs=253.3
Q ss_pred cccccccccCCCcchHHHHHHHHhCChHHHHHHHhh-cccccccCCCCCCchH-HHHHHHHHHHHhcCCCCCccChHHHH
Q 002523 336 LLGLTGLRNLGNTCFMNSAIQCLAHTPEIVDYFLGD-YQKEINYENPLGLNGE-LALAFGDLLRKLWAPGGIPVAPRMFK 413 (912)
Q Consensus 336 ~~g~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~ll~~-~~~~~~~~n~l~~~~~-l~~~l~~L~~~l~~~~~~~i~P~~~~ 413 (912)
..-+.||.|+|||||||++||||+.+..|...|+.. |...+|.++|.|..|. .+..|..|...+...+...|+|+.|+
T Consensus 68 n~~p~GL~N~GNtCymNc~lQCl~~~~dL~~M~~~~~ylq~INtd~prg~~g~~~~k~F~~l~~~~~~Hg~~sis~~nF~ 147 (415)
T COG5533 68 NLPPNGLRNKGNTCYMNCALQCLLSIGDLNTMLQGRFYLQNINTDFPRGKPGSNAFKQFIALYETPGCHGPKSISPRNFI 147 (415)
T ss_pred ccCCccccccCceehHHHHHHHHHhhhHHHHHhhhhhhhhhccCCCCCCCcchhHHHHHHHHHhccccCCCcccchHHHH
Confidence 346799999999999999999999999999987754 8889999999999994 55677788888877778889999999
Q ss_pred HHHhhhCCCCCCCCcCCHHHHHHHHHHHHHHHhhhcc-cCCccccccCCCCCh-----HHHHHHHHHhhhcCCCcccccc
Q 002523 414 LKLANFAPQFSGYNQHDSQEFLAFLLDGLHEDLNRVK-CKPYLEAKDAEGQPE-----EEVAEEYWRNHRARNDSIIVDL 487 (912)
Q Consensus 414 ~~l~~~~~~F~~~~QqDA~EfL~~LLd~L~eel~~~~-~k~~~~~~d~~~~~~-----~~~a~e~w~~~~~~~~SiI~~l 487 (912)
+.++..++.|++.+|||||||+.++||.|||++|.-. ++|..+.+|...+-. .....-.|+.|...+.|+|.+.
T Consensus 148 ~i~~~~n~~fs~dmQqD~qEFl~fflD~LHedln~N~Srs~i~~l~de~e~~Reel~l~~~S~~EWn~~L~sn~S~v~~~ 227 (415)
T COG5533 148 DILSGRNKLFSGDMQQDSQEFLIFFLDLLHEDLNGNKSRSPILELKDEFEEVREELPLSHFSHHEWNLHLRSNKSLVAKT 227 (415)
T ss_pred HHHccccccccccchhhHHHHHHHHHHHHHhhhcCCcccccccccchHHHHHHhhcCcchhhhhhhHHhhccchHHHHHH
Confidence 9999999999999999999999999999999998644 334444444221111 1122357999999999999999
Q ss_pred ccEEEEEEEecCCCCCeeeeeecceeEEecCCCCCccceEEEEEcCCCCCCCeeeEEEeCCCCCHHHHHHHHHhhcCCCC
Q 002523 488 CQGQYRSMLVCPVCNKVSVTFDPLMYLSLPIPSTTMRTMTVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALSTKCFLRN 567 (912)
Q Consensus 488 F~G~~~s~l~C~~C~~~s~~~e~F~~LsL~Ip~~~~~~~~v~~~~~d~~~~p~~~~v~v~k~~~~~~l~~~l~~~~~~~~ 567 (912)
|.|+.+++++|..|++.|.++.+|..|.+|++..
T Consensus 228 f~gq~~srlqC~~C~~TStT~a~fs~l~vp~~~v---------------------------------------------- 261 (415)
T COG5533 228 FFGQDKSRLQCEACNYTSTTIAMFSTLLVPPYEV---------------------------------------------- 261 (415)
T ss_pred HhhhhhhhhhhhhcCCceeEEeccceeeeccchh----------------------------------------------
Confidence 9999999999999999999999999999998731
Q ss_pred CCcEEEEEEecceeeeeccCCcccccccCCCCcEEEEEcCCCCCCCceEEEeeecccccccccccccceeeeccceEEEc
Q 002523 568 HEKLLVAEIYRSKIFRVLDEPSDLLGLIRDEDKLVAYRLPKDSETPSLVLFMHERKEESCHLGRLSLEWKIFGTPLVGRL 647 (912)
Q Consensus 568 ~~~l~~~ei~~~~i~~~~~~~~~~~~~i~~~d~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~v 647 (912)
T Consensus 262 -------------------------------------------------------------------------------- 261 (415)
T COG5533 262 -------------------------------------------------------------------------------- 261 (415)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCChhHHHHHHHHhcCCccCCCCCCCCcccccCCCCCCCcccccccccccCCCCCCCCCCCCCCCCCCCCceeEEEec
Q 002523 648 SDLTNGSDIRKLFLKLLDPFLMPVGDDSDFSDEAGKIDNGDSIVEDVTSSRVSDNDAVSDSSEAGDEPHLSDDFQFYRLD 727 (912)
Q Consensus 648 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 727 (912)
T Consensus 262 -------------------------------------------------------------------------------- 261 (415)
T COG5533 262 -------------------------------------------------------------------------------- 261 (415)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcccccCCCCCcCCCCCCeEEEEecChhhHhhhhhhhhhhhhhccccccccCCCCCccCHHHHHHHhhCcccCCCCC
Q 002523 728 SIRPTEIKMNEPLSISDFAKPLTIHVQWAEKMIEKYDTCLLSSLMEVCKPQLFTRMPPESVSLYKCLEAFLKEEPLGPED 807 (912)
Q Consensus 728 ~~~~~~~~~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~isL~dCL~~F~~~E~L~~~d 807 (912)
..+.|+|||+.|+++|.|+++|
T Consensus 262 ----------------------------------------------------------~~~~l~eC~~~f~~~e~L~g~d 283 (415)
T COG5533 262 ----------------------------------------------------------VQLGLQECIDRFYEEEKLEGKD 283 (415)
T ss_pred ----------------------------------------------------------eeecHHHHHHHhhhHHhhcCcc
Confidence 1135999999999999999999
Q ss_pred CCCCCCcccccceEEEEEeecCCceeEEEEeeeEEcCceecccceEE----ecCCCCCCCCcccccCCCCCCccEEEEEE
Q 002523 808 MWYCPRCKKHWQASKKLDLWRSPDILVIHLKRFSFSRYFKSKLDTYV----DFPIDDLDLSNYVCCKNSQLSNRYVLYAI 883 (912)
Q Consensus 808 ~wyC~~Ck~~~~AtKk~~l~~lP~iLiIHLKRF~~~~~~~~Ki~~~V----~FPi~~LDls~~v~~~~~~~~~~YdL~AV 883 (912)
.|.||+|++++.++|++.|.++|++|||||+||.-.-..+.|||+.- +||.+.+ ..+-.-+.-+-.+..|.|+||
T Consensus 284 ~W~CpkC~~k~ss~K~~~I~~lP~~LII~i~RF~i~V~~~~kiD~p~gw~~~~~~e~~-v~~~f~~~~~~~P~~Y~L~gv 362 (415)
T COG5533 284 AWRCPKCGRKESSRKRMEILVLPDVLIIHISRFHISVMGRKKIDTPQGWKNTASVEVN-VTLLFNNGIGYIPRKYSLLGV 362 (415)
T ss_pred cccCchhcccccchheEEEEecCceEEEEeeeeeEEeecccccCCCcchhccCCceec-ccccccCCCCCCccceeEEEE
Confidence 99999999999999999999999999999999996655566766643 3342211 111111112236788999999
Q ss_pred EEeeecCCCceEEEEEEeCC-eEEEE
Q 002523 884 SNHYGGMGGGHYTAFVDVSC-VYSFH 908 (912)
Q Consensus 884 inH~G~l~gGHYtAy~k~~~-~~~f~ 908 (912)
++|+|++.||||++||+.++ |+-|+
T Consensus 363 ~Ch~G~L~gGHY~s~v~~~~~W~~~d 388 (415)
T COG5533 363 VCHNGTLNGGHYFSEVKRSGTWNVYD 388 (415)
T ss_pred EeecceecCceeEEeeeecCceEEec
Confidence 99999999999999998755 65554
No 4
>KOG1865 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-55 Score=488.66 Aligned_cols=278 Identities=33% Similarity=0.550 Sum_probs=242.4
Q ss_pred cccccccccCCCcchHHHHHHHHhCChHHHHHHHhhcccccccCCCCCCchHHHHHHHHHHHHhcCCCCCccChHHHHHH
Q 002523 336 LLGLTGLRNLGNTCFMNSAIQCLAHTPEIVDYFLGDYQKEINYENPLGLNGELALAFGDLLRKLWAPGGIPVAPRMFKLK 415 (912)
Q Consensus 336 ~~g~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~ll~~~~~~~~~~n~l~~~~~l~~~l~~L~~~l~~~~~~~i~P~~~~~~ 415 (912)
..-.+||.|+|||||+|||||||.++|||++||+...+..... ....++.++|+..+.........+++|..|+..
T Consensus 105 ~~~~~GL~NlGNtCfaNsvlQcLt~T~PLv~yLls~~hs~~C~----~~~~C~lc~~q~hi~~A~~~~g~pisP~~i~s~ 180 (545)
T KOG1865|consen 105 AAVGAGLQNLGNTCFANSVLQCLTYTPPLVNYLLSREHSRSCH----RAKFCMLCTFQAHITRALHNPGHPISPSQILSN 180 (545)
T ss_pred ccCCcceecCCccHHHHHHHHHhcccHHHHHHHHHhhhhhhcc----ccCeeeehHHHHHHHHHhcCCCCccChHHHHHh
Confidence 3456999999999999999999999999999999764433222 234678899999888887777779999999999
Q ss_pred HhhhCCCCCCCCcCCHHHHHHHHHHHHHHHhhhcccCCccccccCCCCChHHHHHHHHHhhhcCCCccccccccEEEEEE
Q 002523 416 LANFAPQFSGYNQHDSQEFLAFLLDGLHEDLNRVKCKPYLEAKDAEGQPEEEVAEEYWRNHRARNDSIIVDLCQGQYRSM 495 (912)
Q Consensus 416 l~~~~~~F~~~~QqDA~EfL~~LLd~L~eel~~~~~k~~~~~~d~~~~~~~~~a~e~w~~~~~~~~SiI~~lF~G~~~s~ 495 (912)
|..+..+|..|.|+||||||.++||.|+.-.-.... .. ....+..++|.++|+|.++++
T Consensus 181 L~~I~~~f~~grQEDAHEFLr~~vd~mqk~cL~g~~-----~~----------------~~~sq~ttlv~~iFGG~LrS~ 239 (545)
T KOG1865|consen 181 LRNISAHFGRGRQEDAHEFLRFTVDAMQKACLPGHK-----QV----------------DPRSQDTTLVHQIFGGYLRSQ 239 (545)
T ss_pred hhhhcccccCCchhhHHHHHHHHHHHHHHhhcCCCc-----cC----------------Ccccccceehhhhhccchhhc
Confidence 999999999999999999999999999965531110 00 123346789999999999999
Q ss_pred EecCCCCCeeeeeecceeEEecCCCCCccceEEEEEcCCCCCCCeeeEEEeCCCCCHHHHHHHHHhhcCCCCCCcEEEEE
Q 002523 496 LVCPVCNKVSVTFDPLMYLSLPIPSTTMRTMTVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALSTKCFLRNHEKLLVAE 575 (912)
Q Consensus 496 l~C~~C~~~s~~~e~F~~LsL~Ip~~~~~~~~v~~~~~d~~~~p~~~~v~v~k~~~~~~l~~~l~~~~~~~~~~~l~~~e 575 (912)
++|..|+++|.++|+.++|+|.|-.
T Consensus 240 vkC~~C~~vS~tyE~~~dltvei~d------------------------------------------------------- 264 (545)
T KOG1865|consen 240 IKCLHCKGVSDTYEPYLDLTLEIQD------------------------------------------------------- 264 (545)
T ss_pred eecccCCCcccccccccceEEEecc-------------------------------------------------------
Confidence 9999999999999999999998641
Q ss_pred EecceeeeeccCCcccccccCCCCcEEEEEcCCCCCCCceEEEeeecccccccccccccceeeeccceEEEcCCCCChhH
Q 002523 576 IYRSKIFRVLDEPSDLLGLIRDEDKLVAYRLPKDSETPSLVLFMHERKEESCHLGRLSLEWKIFGTPLVGRLSDLTNGSD 655 (912)
Q Consensus 576 i~~~~i~~~~~~~~~~~~~i~~~d~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~v~~~~~~~~ 655 (912)
T Consensus 265 -------------------------------------------------------------------------------- 264 (545)
T KOG1865|consen 265 -------------------------------------------------------------------------------- 264 (545)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhcCCccCCCCCCCCcccccCCCCCCCcccccccccccCCCCCCCCCCCCCCCCCCCCceeEEEecCCCCcccc
Q 002523 656 IRKLFLKLLDPFLMPVGDDSDFSDEAGKIDNGDSIVEDVTSSRVSDNDAVSDSSEAGDEPHLSDDFQFYRLDSIRPTEIK 735 (912)
Q Consensus 656 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 735 (912)
T Consensus 265 -------------------------------------------------------------------------------- 264 (545)
T KOG1865|consen 265 -------------------------------------------------------------------------------- 264 (545)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCcCCCCCCeEEEEecChhhHhhhhhhhhhhhhhccccccccCCCCCccCHHHHHHHhhCcccCCCCCCCCCCCcc
Q 002523 736 MNEPLSISDFAKPLTIHVQWAEKMIEKYDTCLLSSLMEVCKPQLFTRMPPESVSLYKCLEAFLKEEPLGPEDMWYCPRCK 815 (912)
Q Consensus 736 ~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~isL~dCL~~F~~~E~L~~~d~wyC~~Ck 815 (912)
.-+|++||+.|+++|.|+++|+|.|.+||
T Consensus 265 ---------------------------------------------------~~sl~~AL~qFt~~E~L~gen~Y~C~~Ck 293 (545)
T KOG1865|consen 265 ---------------------------------------------------ASSLQQALEQFTKPEKLDGENAYHCGRCK 293 (545)
T ss_pred ---------------------------------------------------chhHHHHHHHhhhHHhhCCccccccchhh
Confidence 02799999999999999999999999999
Q ss_pred cccceEEEEEeecCCceeEEEEeeeEEcCceecccceEEecCCCCCCCCcccccCCCCCCccEEEEEEEEeee-cCCCce
Q 002523 816 KHWQASKKLDLWRSPDILVIHLKRFSFSRYFKSKLDTYVDFPIDDLDLSNYVCCKNSQLSNRYVLYAISNHYG-GMGGGH 894 (912)
Q Consensus 816 ~~~~AtKk~~l~~lP~iLiIHLKRF~~~~~~~~Ki~~~V~FPi~~LDls~~v~~~~~~~~~~YdL~AVinH~G-~l~gGH 894 (912)
+++.|.|++.|.++|.||+||||||+. .+..||+..|.|| +.|||.|||..+.+ .+.+|.||||++|.| ...+||
T Consensus 294 ~~v~A~K~lti~raPnVLTi~LKRF~~--~~~gKI~K~I~fP-E~LDl~PyMS~~~e-~s~~Y~LYavlVH~g~~~~~GH 369 (545)
T KOG1865|consen 294 QKVPASKQLTIHRAPNVLTLHLKRFSN--GTGGKISKPVSFP-ETLDLQPYMSQPNE-GSTVYKLYAVLVHLGTSCHSGH 369 (545)
T ss_pred hhCcccceeeeecCCceEEEeeehhcc--CcccccccccCCc-ccccccccccCCCC-CCceEEEEEEEEeccccccCCc
Confidence 999999999999999999999999998 5568999999999 89999999996665 889999999999999 899999
Q ss_pred EEEEEEe--CCeEEEE
Q 002523 895 YTAFVDV--SCVYSFH 908 (912)
Q Consensus 895 YtAy~k~--~~~~~f~ 908 (912)
|++|||. +.||.+|
T Consensus 370 Y~cYvks~~g~Wy~~D 385 (545)
T KOG1865|consen 370 YFCYVKSQNGQWYKMD 385 (545)
T ss_pred eEEEEEcCCCceEEcc
Confidence 9999998 4588776
No 5
>cd02663 Peptidase_C19G A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.7e-54 Score=478.14 Aligned_cols=263 Identities=29% Similarity=0.457 Sum_probs=226.9
Q ss_pred ccccCCCcchHHHHHHHHhCChHHHHHHHhhcccccccCCCCCCchHHHHHHHHHHHHhcCCC--CCccChHHHHHHHhh
Q 002523 341 GLRNLGNTCFMNSAIQCLAHTPEIVDYFLGDYQKEINYENPLGLNGELALAFGDLLRKLWAPG--GIPVAPRMFKLKLAN 418 (912)
Q Consensus 341 GL~NlGNTCYmNSvLQ~L~~~p~f~~~ll~~~~~~~~~~n~l~~~~~l~~~l~~L~~~l~~~~--~~~i~P~~~~~~l~~ 418 (912)
||.|+||||||||+||||+| .+++.+|+.|+..||.+. ..+++|..|+.+++.
T Consensus 1 Gl~NlGnTCY~NsvLQ~L~~-------------------------~~l~~~L~~lf~~l~~~~~~~~~isP~~f~~~l~~ 55 (300)
T cd02663 1 GLENFGNTCYCNSVLQALYF-------------------------ENLLTCLKDLFESISEQKKRTGVISPKKFITRLKR 55 (300)
T ss_pred CccCCCcceehhHHHHHhhh-------------------------HHHHHHHHHHHHHHHhCCCCCeeECHHHHHHHHHh
Confidence 99999999999999999998 347788999999998764 356999999999999
Q ss_pred hCCCCCCCCcCCHHHHHHHHHHHHHHHhhhcccCCccccccCCCCChHHHHHHHHHhhhcCCCccccccccEEEEEEEec
Q 002523 419 FAPQFSGYNQHDSQEFLAFLLDGLHEDLNRVKCKPYLEAKDAEGQPEEEVAEEYWRNHRARNDSIIVDLCQGQYRSMLVC 498 (912)
Q Consensus 419 ~~~~F~~~~QqDA~EfL~~LLd~L~eel~~~~~k~~~~~~d~~~~~~~~~a~e~w~~~~~~~~SiI~~lF~G~~~s~l~C 498 (912)
..|.|.+++||||||||.+|||.||+++++..++...+. ...+........++|.++|+|++.++++|
T Consensus 56 ~~~~f~~~~QqDA~EFl~~lLd~l~~~l~~~~~~~~~~~------------~~~~~~~~~~~~~~i~~~F~G~~~~~~~C 123 (300)
T cd02663 56 ENELFDNYMHQDAHEFLNFLLNEIAEILDAERKAEKANR------------KLNNNNNAEPQPTWVHEIFQGILTNETRC 123 (300)
T ss_pred hcCCCCCCccccHHHHHHHHHHHHHHHHHHHhhcccccc------------cccccccCCcCCCChhhhCceEEEeeEEe
Confidence 999999999999999999999999999986544322110 01122233446788999999999999999
Q ss_pred CCCCCeeeeeecceeEEecCCCCCccceEEEEEcCCCCCCCeeeEEEeCCCCCHHHHHHHHHhhcCCCCCCcEEEEEEec
Q 002523 499 PVCNKVSVTFDPLMYLSLPIPSTTMRTMTVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALSTKCFLRNHEKLLVAEIYR 578 (912)
Q Consensus 499 ~~C~~~s~~~e~F~~LsL~Ip~~~~~~~~v~~~~~d~~~~p~~~~v~v~k~~~~~~l~~~l~~~~~~~~~~~l~~~ei~~ 578 (912)
..|++++.+.|+|++|+|+||..
T Consensus 124 ~~C~~~s~~~e~f~~Lsl~i~~~--------------------------------------------------------- 146 (300)
T cd02663 124 LTCETVSSRDETFLDLSIDVEQN--------------------------------------------------------- 146 (300)
T ss_pred CCCCCCccccceeEEeccCCCCc---------------------------------------------------------
Confidence 99999999999999999998731
Q ss_pred ceeeeeccCCcccccccCCCCcEEEEEcCCCCCCCceEEEeeecccccccccccccceeeeccceEEEcCCCCChhHHHH
Q 002523 579 SKIFRVLDEPSDLLGLIRDEDKLVAYRLPKDSETPSLVLFMHERKEESCHLGRLSLEWKIFGTPLVGRLSDLTNGSDIRK 658 (912)
Q Consensus 579 ~~i~~~~~~~~~~~~~i~~~d~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~v~~~~~~~~l~~ 658 (912)
T Consensus 147 -------------------------------------------------------------------------------- 146 (300)
T cd02663 147 -------------------------------------------------------------------------------- 146 (300)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhcCCccCCCCCCCCcccccCCCCCCCcccccccccccCCCCCCCCCCCCCCCCCCCCceeEEEecCCCCcccccCC
Q 002523 659 LFLKLLDPFLMPVGDDSDFSDEAGKIDNGDSIVEDVTSSRVSDNDAVSDSSEAGDEPHLSDDFQFYRLDSIRPTEIKMNE 738 (912)
Q Consensus 659 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 738 (912)
T Consensus 147 -------------------------------------------------------------------------------- 146 (300)
T cd02663 147 -------------------------------------------------------------------------------- 146 (300)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcCCCCCCeEEEEecChhhHhhhhhhhhhhhhhccccccccCCCCCccCHHHHHHHhhCcccCCCCCCCCCCCccccc
Q 002523 739 PLSISDFAKPLTIHVQWAEKMIEKYDTCLLSSLMEVCKPQLFTRMPPESVSLYKCLEAFLKEEPLGPEDMWYCPRCKKHW 818 (912)
Q Consensus 739 ~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~isL~dCL~~F~~~E~L~~~d~wyC~~Ck~~~ 818 (912)
.+|++||+.|+++|.|.++|.|+|++|++++
T Consensus 147 -------------------------------------------------~sl~~~L~~~~~~E~l~~~~~~~C~~C~~~~ 177 (300)
T cd02663 147 -------------------------------------------------TSITSCLRQFSATETLCGRNKFYCDECCSLQ 177 (300)
T ss_pred -------------------------------------------------CCHHHHHHHhhcccccCCCCcEECCCCCCce
Confidence 2799999999999999999999999999999
Q ss_pred ceEEEEEeecCCceeEEEEeeeEEcCc--eecccceEEecCCCCCCCCcccccCCCCCCccEEEEEEEEeee-cCCCceE
Q 002523 819 QASKKLDLWRSPDILVIHLKRFSFSRY--FKSKLDTYVDFPIDDLDLSNYVCCKNSQLSNRYVLYAISNHYG-GMGGGHY 895 (912)
Q Consensus 819 ~AtKk~~l~~lP~iLiIHLKRF~~~~~--~~~Ki~~~V~FPi~~LDls~~v~~~~~~~~~~YdL~AVinH~G-~l~gGHY 895 (912)
.|+|++.|+++|+|||||||||.|+.. ...|+++.|.||+ .|||.++...... ....|+|+|||+|.| ++++|||
T Consensus 178 ~a~k~~~i~~lP~vLii~LkRF~~~~~~~~~~Ki~~~v~fp~-~L~~~~~~~~~~~-~~~~Y~L~~vi~H~G~~~~~GHY 255 (300)
T cd02663 178 EAEKRMKIKKLPKILALHLKRFKYDEQLNRYIKLFYRVVFPL-ELRLFNTTDDAEN-PDRLYELVAVVVHIGGGPNHGHY 255 (300)
T ss_pred eEEEEEEeccCCceeEEEEEeEEeecccCCceecCceEecCc-EEeccccccccCC-CCeEEEEEEEEEEecCCCCCCce
Confidence 999999999999999999999999854 3689999999995 8999987543332 567999999999999 5999999
Q ss_pred EEEEEeCC-eEEEE
Q 002523 896 TAFVDVSC-VYSFH 908 (912)
Q Consensus 896 tAy~k~~~-~~~f~ 908 (912)
|||+|.++ ||.||
T Consensus 256 ~a~~k~~~~W~~fd 269 (300)
T cd02663 256 VSIVKSHGGWLLFD 269 (300)
T ss_pred EEEEECCCcEEEEc
Confidence 99999854 88776
No 6
>cd02671 Peptidase_C19O A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=5.3e-53 Score=469.82 Aligned_cols=276 Identities=28% Similarity=0.396 Sum_probs=222.0
Q ss_pred ccccccccccccCCCcchHHHHHHHHhCChHHHHHHHhhcccccccCCCCCCchHHHHHHHHHHHHhcCCCCCccChHHH
Q 002523 333 GVCLLGLTGLRNLGNTCFMNSAIQCLAHTPEIVDYFLGDYQKEINYENPLGLNGELALAFGDLLRKLWAPGGIPVAPRMF 412 (912)
Q Consensus 333 ~~~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~ll~~~~~~~~~~n~l~~~~~l~~~l~~L~~~l~~~~~~~i~P~~~ 412 (912)
+....|++||.|+||||||||+||||+|+|+|++++.... +.......+ ..+..++..++......++|..|
T Consensus 18 ~~~~~~~~GL~NlGnTCYmNSvLQ~L~~~p~fr~~l~~~~-------~~~~~~~~~-q~~~~~l~~~~~~~~~~~~P~~~ 89 (332)
T cd02671 18 RENLLPFVGLNNLGNTCYLNSVLQVLYFCPGFKHGLKHLV-------SLISSVEQL-QSSFLLNPEKYNDELANQAPRRL 89 (332)
T ss_pred cccCCCCcceeccCceEeHHHHHHHHHcChHHHHHHHhhh-------cccCcHHHH-HHHHHHHHHHHhhcccccCHHHH
Confidence 3456899999999999999999999999999999886431 111111111 22223445555555556789999
Q ss_pred HHHHhhhCCCCCCCCcCCHHHHHHHHHHHHHHHhhhcccCCccccccCCCCChHHHHHHHHHhhhcCCCccccccccEEE
Q 002523 413 KLKLANFAPQFSGYNQHDSQEFLAFLLDGLHEDLNRVKCKPYLEAKDAEGQPEEEVAEEYWRNHRARNDSIIVDLCQGQY 492 (912)
Q Consensus 413 ~~~l~~~~~~F~~~~QqDA~EfL~~LLd~L~eel~~~~~k~~~~~~d~~~~~~~~~a~e~w~~~~~~~~SiI~~lF~G~~ 492 (912)
+.++++.+|.|.+++||||||||.+|||.||+ +|.++|+|++
T Consensus 90 ~~~l~~~~~~f~~~~QQDA~EFl~~LLd~L~~--------------------------------------~i~~~F~g~~ 131 (332)
T cd02671 90 LNALREVNPMYEGYLQHDAQEVLQCILGNIQE--------------------------------------LVEKDFQGQL 131 (332)
T ss_pred HHHHHHhccccCCccccCHHHHHHHHHHHHHH--------------------------------------HHHhhhceEE
Confidence 99999999999999999999999999999983 2668999999
Q ss_pred EEEEecCCCCCeeeeeecceeEEecCCCCCccceEEEEEcCCCCCCCeeeEEEeCCCCCHHHHHHHHHhhcCCCCCCcEE
Q 002523 493 RSMLVCPVCNKVSVTFDPLMYLSLPIPSTTMRTMTVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALSTKCFLRNHEKLL 572 (912)
Q Consensus 493 ~s~l~C~~C~~~s~~~e~F~~LsL~Ip~~~~~~~~v~~~~~d~~~~p~~~~v~v~k~~~~~~l~~~l~~~~~~~~~~~l~ 572 (912)
.++++|.+|++.+.++|+|++|+||||.......+
T Consensus 132 ~~~~~C~~C~~~s~~~E~f~~lsL~i~~~~~~~~~--------------------------------------------- 166 (332)
T cd02671 132 VLRTRCLECETFTERREDFQDISVPVQESELSKSE--------------------------------------------- 166 (332)
T ss_pred EEEEEeCCCCCeeceecccEEEEEEeCCCcccccc---------------------------------------------
Confidence 99999999999999999999999999964210000
Q ss_pred EEEEecceeeeeccCCcccccccCCCCcEEEEEcCCCCCCCceEEEeeecccccccccccccceeeeccceEEEcCCCCC
Q 002523 573 VAEIYRSKIFRVLDEPSDLLGLIRDEDKLVAYRLPKDSETPSLVLFMHERKEESCHLGRLSLEWKIFGTPLVGRLSDLTN 652 (912)
Q Consensus 573 ~~ei~~~~i~~~~~~~~~~~~~i~~~d~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~v~~~~~ 652 (912)
..
T Consensus 167 ---------------~~--------------------------------------------------------------- 168 (332)
T cd02671 167 ---------------ES--------------------------------------------------------------- 168 (332)
T ss_pred ---------------cc---------------------------------------------------------------
Confidence 00
Q ss_pred hhHHHHHHHHhcCCccCCCCCCCCcccccCCCCCCCcccccccccccCCCCCCCCCCCCCCCCCCCCceeEEEecCCCCc
Q 002523 653 GSDIRKLFLKLLDPFLMPVGDDSDFSDEAGKIDNGDSIVEDVTSSRVSDNDAVSDSSEAGDEPHLSDDFQFYRLDSIRPT 732 (912)
Q Consensus 653 ~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 732 (912)
. ... . +
T Consensus 169 ------------------------------------~---------------~~~-~-----------------~----- 174 (332)
T cd02671 169 ------------------------------------S---------------EIS-P-----------------D----- 174 (332)
T ss_pred ------------------------------------c---------------ccc-c-----------------c-----
Confidence 0 000 0 0
Q ss_pred ccccCCCCCcCCCCCCeEEEEecChhhHhhhhhhhhhhhhhccccccccCCCCCccCHHHHHHHhhCcccCCCCCCCCCC
Q 002523 733 EIKMNEPLSISDFAKPLTIHVQWAEKMIEKYDTCLLSSLMEVCKPQLFTRMPPESVSLYKCLEAFLKEEPLGPEDMWYCP 812 (912)
Q Consensus 733 ~~~~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~isL~dCL~~F~~~E~L~~~d~wyC~ 812 (912)
| ..+..+|++||+.|+++|.|.++|.|+|+
T Consensus 175 ---------------------------------------~-----------~~~~~tL~~~L~~f~~~E~l~g~n~y~C~ 204 (332)
T cd02671 175 ---------------------------------------P-----------KTEMKTLKWAISQFASVERIVGEDKYFCE 204 (332)
T ss_pred ---------------------------------------c-----------ccccCCHHHHHHHhCCcceecCCCCeeCC
Confidence 0 00235899999999999999999999999
Q ss_pred CcccccceEEEEEeecCCceeEEEEeeeEEcC------ceecccceEEecCCCCCCCCcccccCCCCCCccEEEEEEEEe
Q 002523 813 RCKKHWQASKKLDLWRSPDILVIHLKRFSFSR------YFKSKLDTYVDFPIDDLDLSNYVCCKNSQLSNRYVLYAISNH 886 (912)
Q Consensus 813 ~Ck~~~~AtKk~~l~~lP~iLiIHLKRF~~~~------~~~~Ki~~~V~FPi~~LDls~~v~~~~~~~~~~YdL~AVinH 886 (912)
+|++++.|+|++.|+++|+||+||||||.++. ....|+++.|.||+ .|||.+|...+ ....|+|+|||+|
T Consensus 205 ~C~~~~~a~k~~~~~~~P~vL~i~LkRF~~~~~~~~~~~~~~Ki~~~v~fp~-~L~~~~~~~~~---~~~~Y~L~~VI~H 280 (332)
T cd02671 205 NCHHYTEAERSLLFDKLPEVITIHLKCFAANGSEFDCYGGLSKVNTPLLTPL-KLSLEEWSTKP---KNDVYRLFAVVMH 280 (332)
T ss_pred CCCCceeEEEEEEEecCCCEEEEEeeeeccccccccccCCceecCccccCcc-ccccccccCCC---CCCeEEEEEEEEE
Confidence 99999999999999999999999999999864 24689999999996 89999887543 4589999999999
Q ss_pred ee-cCCCceEEEEEEeCCeEEEE
Q 002523 887 YG-GMGGGHYTAFVDVSCVYSFH 908 (912)
Q Consensus 887 ~G-~l~gGHYtAy~k~~~~~~f~ 908 (912)
.| ++++||||||+| ||.||
T Consensus 281 ~G~~~~~GHY~a~vr---W~~fd 300 (332)
T cd02671 281 SGATISSGHYTAYVR---WLLFD 300 (332)
T ss_pred cCCCCCCCeEEEEEE---EEEEc
Confidence 99 699999999999 88876
No 7
>cd02668 Peptidase_C19L A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.3e-52 Score=468.07 Aligned_cols=269 Identities=28% Similarity=0.432 Sum_probs=230.7
Q ss_pred ccccCCCcchHHHHHHHHhCChHHHHHHHhhccccc-ccCC----CCCCchHHHHHHHHHHHHhcCCCCCccChHHHHHH
Q 002523 341 GLRNLGNTCFMNSAIQCLAHTPEIVDYFLGDYQKEI-NYEN----PLGLNGELALAFGDLLRKLWAPGGIPVAPRMFKLK 415 (912)
Q Consensus 341 GL~NlGNTCYmNSvLQ~L~~~p~f~~~ll~~~~~~~-~~~n----~l~~~~~l~~~l~~L~~~l~~~~~~~i~P~~~~~~ 415 (912)
||.|+||||||||+||||+|+|+|+++++....... ...+ ......+++.+|+.|+..|+.+...+++|..|..+
T Consensus 1 GL~NlGnTCY~NsvLQ~L~~~~~fr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lf~~l~~~~~~~i~p~~f~~~ 80 (324)
T cd02668 1 GLKNLGATCYVNSFLQLWFMNLEFRKAVYECNSTEDAELKNMPPDKPHEPQTIIDQLQLIFAQLQFGNRSVVDPSGFVKA 80 (324)
T ss_pred CcccCCceeHHHHHHHHHHCCHHHHHHHHccCcccccccccccccCCcccchHHHHHHHHHHHHHhCCCceEChHHHHHH
Confidence 899999999999999999999999999985321111 1000 00113578999999999999988899999999998
Q ss_pred HhhhCCCCCCCCcCCHHHHHHHHHHHHHHHhhhcccCCccccccCCCCChHHHHHHHHHhhhcCCCccccccccEEEEEE
Q 002523 416 LANFAPQFSGYNQHDSQEFLAFLLDGLHEDLNRVKCKPYLEAKDAEGQPEEEVAEEYWRNHRARNDSIIVDLCQGQYRSM 495 (912)
Q Consensus 416 l~~~~~~F~~~~QqDA~EfL~~LLd~L~eel~~~~~k~~~~~~d~~~~~~~~~a~e~w~~~~~~~~SiI~~lF~G~~~s~ 495 (912)
++ |..++|||||||+.+|||.||+++..... ....++|.++|.|++.++
T Consensus 81 l~-----~~~~~QqDa~EFl~~lLd~L~~~l~~~~~--------------------------~~~~~~i~~~F~G~~~~~ 129 (324)
T cd02668 81 LG-----LDTGQQQDAQEFSKLFLSLLEAKLSKSKN--------------------------PDLKNIVQDLFRGEYSYV 129 (324)
T ss_pred hC-----CCCccccCHHHHHHHHHHHHHHHHhhccC--------------------------CcccchhhhhcceEEEEE
Confidence 84 67889999999999999999998853211 012467899999999999
Q ss_pred EecCCCCCeeeeeecceeEEecCCCCCccceEEEEEcCCCCCCCeeeEEEeCCCCCHHHHHHHHHhhcCCCCCCcEEEEE
Q 002523 496 LVCPVCNKVSVTFDPLMYLSLPIPSTTMRTMTVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALSTKCFLRNHEKLLVAE 575 (912)
Q Consensus 496 l~C~~C~~~s~~~e~F~~LsL~Ip~~~~~~~~v~~~~~d~~~~p~~~~v~v~k~~~~~~l~~~l~~~~~~~~~~~l~~~e 575 (912)
++|..|++.+.+.|+|+.|+|+||..
T Consensus 130 ~~C~~C~~~s~~~e~f~~l~l~i~~~------------------------------------------------------ 155 (324)
T cd02668 130 TQCSKCGRESSLPSKFYELELQLKGH------------------------------------------------------ 155 (324)
T ss_pred EEeCCCCCccccccccEEEEEEeccc------------------------------------------------------
Confidence 99999999999999999999998721
Q ss_pred EecceeeeeccCCcccccccCCCCcEEEEEcCCCCCCCceEEEeeecccccccccccccceeeeccceEEEcCCCCChhH
Q 002523 576 IYRSKIFRVLDEPSDLLGLIRDEDKLVAYRLPKDSETPSLVLFMHERKEESCHLGRLSLEWKIFGTPLVGRLSDLTNGSD 655 (912)
Q Consensus 576 i~~~~i~~~~~~~~~~~~~i~~~d~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~v~~~~~~~~ 655 (912)
T Consensus 156 -------------------------------------------------------------------------------- 155 (324)
T cd02668 156 -------------------------------------------------------------------------------- 155 (324)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhcCCccCCCCCCCCcccccCCCCCCCcccccccccccCCCCCCCCCCCCCCCCCCCCceeEEEecCCCCcccc
Q 002523 656 IRKLFLKLLDPFLMPVGDDSDFSDEAGKIDNGDSIVEDVTSSRVSDNDAVSDSSEAGDEPHLSDDFQFYRLDSIRPTEIK 735 (912)
Q Consensus 656 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 735 (912)
T Consensus 156 -------------------------------------------------------------------------------- 155 (324)
T cd02668 156 -------------------------------------------------------------------------------- 155 (324)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCcCCCCCCeEEEEecChhhHhhhhhhhhhhhhhccccccccCCCCCccCHHHHHHHhhCcccCCCCCCCCCCCcc
Q 002523 736 MNEPLSISDFAKPLTIHVQWAEKMIEKYDTCLLSSLMEVCKPQLFTRMPPESVSLYKCLEAFLKEEPLGPEDMWYCPRCK 815 (912)
Q Consensus 736 ~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~isL~dCL~~F~~~E~L~~~d~wyC~~Ck 815 (912)
.+|++||+.|+.+|.|.++|.|+|++|+
T Consensus 156 ----------------------------------------------------~sl~~~L~~~~~~e~l~g~~~~~C~~C~ 183 (324)
T cd02668 156 ----------------------------------------------------KTLEECIDEFLKEEQLTGDNQYFCESCN 183 (324)
T ss_pred ----------------------------------------------------CCHHHHHHHhhCceecCCCccccCCCCC
Confidence 2789999999999999999999999999
Q ss_pred cccceEEEEEeecCCceeEEEEeeeEEcC--ceecccceEEecCCCCCCCCcccccCCCCCCccEEEEEEEEeee-cCCC
Q 002523 816 KHWQASKKLDLWRSPDILVIHLKRFSFSR--YFKSKLDTYVDFPIDDLDLSNYVCCKNSQLSNRYVLYAISNHYG-GMGG 892 (912)
Q Consensus 816 ~~~~AtKk~~l~~lP~iLiIHLKRF~~~~--~~~~Ki~~~V~FPi~~LDls~~v~~~~~~~~~~YdL~AVinH~G-~l~g 892 (912)
+++.|+|+..|.++|+||+||||||.|+. ..+.|+++.|+|| +.|||++|+..... ++..|+|+|||+|.| ++++
T Consensus 184 ~~~~a~k~~~i~~lP~iLii~LkRf~~d~~~~~~~Ki~~~v~fp-~~Ldl~~~~~~~~~-~~~~Y~L~~vI~H~G~~~~~ 261 (324)
T cd02668 184 SKTDATRRIRLTTLPPTLNFQLLRFVFDRKTGAKKKLNASISFP-EILDMGEYLAESDE-GSYVYELSGVLIHQGVSAYS 261 (324)
T ss_pred ceeeeEEEEEecCCCCeEEEEEEcceeecccCcceeCCcEEECC-CeEechhhcccccC-CCcEEEEEEEEEEcCCCCCC
Confidence 99999999999999999999999999974 4578999999999 69999999865443 678899999999999 6899
Q ss_pred ceEEEEEEe---CCeEEEE
Q 002523 893 GHYTAFVDV---SCVYSFH 908 (912)
Q Consensus 893 GHYtAy~k~---~~~~~f~ 908 (912)
|||+||+|+ +.||.||
T Consensus 262 GHY~~~~k~~~~~~W~~fd 280 (324)
T cd02668 262 GHYIAHIKDEQTGEWYKFN 280 (324)
T ss_pred EeeEEEEECCCCCcEEEEE
Confidence 999999996 4599887
No 8
>cd02660 Peptidase_C19D A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=7e-52 Score=463.15 Aligned_cols=293 Identities=31% Similarity=0.546 Sum_probs=240.4
Q ss_pred cccccCCCcchHHHHHHHHhCChHHHHHHHhhcccccccCCCCCCchHHHHHHHHHHHHhc-CCCCCccChHHHHHHHhh
Q 002523 340 TGLRNLGNTCFMNSAIQCLAHTPEIVDYFLGDYQKEINYENPLGLNGELALAFGDLLRKLW-APGGIPVAPRMFKLKLAN 418 (912)
Q Consensus 340 ~GL~NlGNTCYmNSvLQ~L~~~p~f~~~ll~~~~~~~~~~n~l~~~~~l~~~l~~L~~~l~-~~~~~~i~P~~~~~~l~~ 418 (912)
+||.|+||||||||+||||+|+|+|+++++...+.. +.. ......++.++|+.|+..|+ .....+++|..|+.+++.
T Consensus 1 rGl~N~gntCY~NsvLQ~L~~~~~f~~~ll~~~~~~-~~~-~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~l~~~~~ 78 (328)
T cd02660 1 RGLINLGATCFMNVILQALLHNPLLRNYFLSDRHSC-TCL-SCSPNSCLSCAMDEIFQEFYYSGDRSPYGPINLLYLSWK 78 (328)
T ss_pred CCccccCcchHHHHHHHHHhcCHHHHHHHhcCcccc-ccc-cCCccccHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHh
Confidence 599999999999999999999999999998642211 000 11123578999999999994 445678999999999999
Q ss_pred hCCCCCCCCcCCHHHHHHHHHHHHHHHhhhcccCCccccccCCCCChHHHHHHHHHhhhcCCCccccccccEEEEEEEec
Q 002523 419 FAPQFSGYNQHDSQEFLAFLLDGLHEDLNRVKCKPYLEAKDAEGQPEEEVAEEYWRNHRARNDSIIVDLCQGQYRSMLVC 498 (912)
Q Consensus 419 ~~~~F~~~~QqDA~EfL~~LLd~L~eel~~~~~k~~~~~~d~~~~~~~~~a~e~w~~~~~~~~SiI~~lF~G~~~s~l~C 498 (912)
..+.|.+++||||||||.+|||.||+++......+ .......++|.++|+|.+.++++|
T Consensus 79 ~~~~f~~~~QqDa~Efl~~ll~~l~~~~~~~~~~~---------------------~~~~~~~~~i~~~F~g~~~~~~~C 137 (328)
T cd02660 79 HSRNLAGYSQQDAHEFFQFLLDQLHTHYGGDKNEA---------------------NDESHCNCIIHQTFSGSLQSSVTC 137 (328)
T ss_pred hchhhcccccccHHHHHHHHHHHHHHHhhcccccc---------------------cccccCCceeEEecccEEEeeeEc
Confidence 99999999999999999999999999986543211 011234578999999999999999
Q ss_pred CCCCCeeeeeecceeEEecCCCCCccceEEEEEcCCCCCCCeeeEEEeCCCCCHHHHHHHHHhhcCCCCCCcEEEEEEec
Q 002523 499 PVCNKVSVTFDPLMYLSLPIPSTTMRTMTVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALSTKCFLRNHEKLLVAEIYR 578 (912)
Q Consensus 499 ~~C~~~s~~~e~F~~LsL~Ip~~~~~~~~v~~~~~d~~~~p~~~~v~v~k~~~~~~l~~~l~~~~~~~~~~~l~~~ei~~ 578 (912)
..|++.+.+.|+|+.|+|+||.......
T Consensus 138 ~~C~~~s~~~e~f~~lsl~i~~~~~~~~---------------------------------------------------- 165 (328)
T cd02660 138 QRCGGVSTTVDPFLDLSLDIPNKSTPSW---------------------------------------------------- 165 (328)
T ss_pred CCCCCccceecccceeeeeccccccccc----------------------------------------------------
Confidence 9999999999999999999985421000
Q ss_pred ceeeeeccCCcccccccCCCCcEEEEEcCCCCCCCceEEEeeecccccccccccccceeeeccceEEEcCCCCChhHHHH
Q 002523 579 SKIFRVLDEPSDLLGLIRDEDKLVAYRLPKDSETPSLVLFMHERKEESCHLGRLSLEWKIFGTPLVGRLSDLTNGSDIRK 658 (912)
Q Consensus 579 ~~i~~~~~~~~~~~~~i~~~d~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~v~~~~~~~~l~~ 658 (912)
.
T Consensus 166 ---------~---------------------------------------------------------------------- 166 (328)
T cd02660 166 ---------A---------------------------------------------------------------------- 166 (328)
T ss_pred ---------c----------------------------------------------------------------------
Confidence 0
Q ss_pred HHHHhcCCccCCCCCCCCcccccCCCCCCCcccccccccccCCCCCCCCCCCCCCCCCCCCceeEEEecCCCCcccccCC
Q 002523 659 LFLKLLDPFLMPVGDDSDFSDEAGKIDNGDSIVEDVTSSRVSDNDAVSDSSEAGDEPHLSDDFQFYRLDSIRPTEIKMNE 738 (912)
Q Consensus 659 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 738 (912)
.. .
T Consensus 167 -----------~~---------------------------------~--------------------------------- 169 (328)
T cd02660 167 -----------LG---------------------------------E--------------------------------- 169 (328)
T ss_pred -----------cc---------------------------------c---------------------------------
Confidence 00 0
Q ss_pred CCCcCCCCCCeEEEEecChhhHhhhhhhhhhhhhhccccccccCCCCCccCHHHHHHHhhCcccCCCCCCCCCCCccccc
Q 002523 739 PLSISDFAKPLTIHVQWAEKMIEKYDTCLLSSLMEVCKPQLFTRMPPESVSLYKCLEAFLKEEPLGPEDMWYCPRCKKHW 818 (912)
Q Consensus 739 ~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~isL~dCL~~F~~~E~L~~~d~wyC~~Ck~~~ 818 (912)
.......+|++||+.|+++|.+++.+ |+|++|++++
T Consensus 170 -------------------------------------------~~~~~~~sl~~~L~~~~~~e~~~~~~-~~C~~C~~~~ 205 (328)
T cd02660 170 -------------------------------------------SGVSGTPTLSDCLDRFTRPEKLGDFA-YKCSGCGSTQ 205 (328)
T ss_pred -------------------------------------------cCCCCCCCHHHHHHHhcCccccCCCC-ccCCCCCCcc
Confidence 00003469999999999999998877 9999999999
Q ss_pred ceEEEEEeecCCceeEEEEeeeEEcC-ceecccceEEecCCCCCCCCccccc--------CCCCCCccEEEEEEEEeeec
Q 002523 819 QASKKLDLWRSPDILVIHLKRFSFSR-YFKSKLDTYVDFPIDDLDLSNYVCC--------KNSQLSNRYVLYAISNHYGG 889 (912)
Q Consensus 819 ~AtKk~~l~~lP~iLiIHLKRF~~~~-~~~~Ki~~~V~FPi~~LDls~~v~~--------~~~~~~~~YdL~AVinH~G~ 889 (912)
.|.|++.|.++|+|||||||||.|+. +...|+.+.|.|| ..|||++|+.. .....+..|+|+|||+|.|+
T Consensus 206 ~~~~~~~i~~lP~~Lii~lkRf~~~~~~~~~K~~~~v~fp-~~Ldl~~~~~~~~~~~~~~~~~~~~~~Y~L~avi~H~G~ 284 (328)
T cd02660 206 EATKQLSIKKLPPVLCFQLKRFEHSLNKTSRKIDTYVQFP-LELNMTPYTSSSIGDTQDSNSLDPDYTYDLFAVVVHKGT 284 (328)
T ss_pred ceEEEEEecCCCceeEEEEEeEEecCCCCCcCCCcEEeCC-CEechhhhcccccccccccccCCCCceEEEEEEEEeecc
Confidence 99999999999999999999999987 5568999999999 48999999985 22336788999999999999
Q ss_pred CCCceEEEEEEeC--CeEEEE
Q 002523 890 MGGGHYTAFVDVS--CVYSFH 908 (912)
Q Consensus 890 l~gGHYtAy~k~~--~~~~f~ 908 (912)
.++||||||+|.+ .||.||
T Consensus 285 ~~~GHY~~~~~~~~~~W~~~n 305 (328)
T cd02660 285 LDTGHYTAYCRQGDGQWFKFD 305 (328)
T ss_pred CCCCcEEEEEECCCCcEEEEE
Confidence 9999999999995 588887
No 9
>cd02669 Peptidase_C19M A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.7e-51 Score=475.17 Aligned_cols=281 Identities=30% Similarity=0.428 Sum_probs=228.2
Q ss_pred ccccccccccccCCCcchHHHHHHHHhCChHHHHHHHhhcccccccCCCCCCchHHHHHHHHHHHHhcCCC--CCccChH
Q 002523 333 GVCLLGLTGLRNLGNTCFMNSAIQCLAHTPEIVDYFLGDYQKEINYENPLGLNGELALAFGDLLRKLWAPG--GIPVAPR 410 (912)
Q Consensus 333 ~~~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~ll~~~~~~~~~~n~l~~~~~l~~~l~~L~~~l~~~~--~~~i~P~ 410 (912)
..+.+|++||.|+||||||||+||||+|+|+||++|+...+.. +. .....+++.+|+.++++||++. +.+++|.
T Consensus 113 ~~~~~G~vGL~NlGnTCYmNsvLQ~L~~~p~lr~~~l~~~~~~-~~---~~~~~~l~~~l~~l~~kl~~~~~~~~~isP~ 188 (440)
T cd02669 113 KPYLPGFVGLNNIKNNDYANVIIQALSHVKPIRNFFLLYENYE-NI---KDRKSELVKRLSELIRKIWNPRNFKGHVSPH 188 (440)
T ss_pred CCccCCccCccCCCCchHHHHHHHHHHCCHHHHHHHhhccccc-cc---cCCCcHHHHHHHHHHHHHhccccCCCccCHH
Confidence 3456899999999999999999999999999999998642211 00 1234579999999999999875 5789999
Q ss_pred HHHHHHhhhC-CCCCCCCcCCHHHHHHHHHHHHHHHhhhcccCCccccccCCCCChHHHHHHHHHhhhcCCCcccccccc
Q 002523 411 MFKLKLANFA-PQFSGYNQHDSQEFLAFLLDGLHEDLNRVKCKPYLEAKDAEGQPEEEVAEEYWRNHRARNDSIIVDLCQ 489 (912)
Q Consensus 411 ~~~~~l~~~~-~~F~~~~QqDA~EfL~~LLd~L~eel~~~~~k~~~~~~d~~~~~~~~~a~e~w~~~~~~~~SiI~~lF~ 489 (912)
.|+.+++... +.|.+++||||||||.+|||.||++++... ..+.++|.++|+
T Consensus 189 ~fl~~l~~~~~~~f~~~~QqDA~EFl~~LLd~L~~~l~~~~---------------------------~~~~~ii~~~F~ 241 (440)
T cd02669 189 ELLQAVSKVSKKKFSITEQSDPVEFLSWLLNTLHKDLGGSK---------------------------KPNSSIIHDCFQ 241 (440)
T ss_pred HHHHHHHhhcccccCCcccCCHHHHHHHHHHHHHHHhccCC---------------------------CCCCCcceeccC
Confidence 9999998765 579999999999999999999999986421 235689999999
Q ss_pred EEEEEEEecCCCC---------------CeeeeeecceeEEecCCCCCccceEEEEEcCCCCCCCeeeEEEeCCCCCHHH
Q 002523 490 GQYRSMLVCPVCN---------------KVSVTFDPLMYLSLPIPSTTMRTMTVTVLSTDGSTMPAPFTVTVPKYGRFQD 554 (912)
Q Consensus 490 G~~~s~l~C~~C~---------------~~s~~~e~F~~LsL~Ip~~~~~~~~v~~~~~d~~~~p~~~~v~v~k~~~~~~ 554 (912)
|+++++++|..|. .++.+.+||++|+|+||.....
T Consensus 242 G~l~~~~~c~~~~~~~~~~~~~~~~c~~~~s~~~~pF~~LsLdip~~~~~------------------------------ 291 (440)
T cd02669 242 GKVQIETQKIKPHAEEEGSKDKFFKDSRVKKTSVSPFLLLTLDLPPPPLF------------------------------ 291 (440)
T ss_pred ceEEEEEEeecccccccccccccccccccceeeeccceEEEecCCCCccc------------------------------
Confidence 9999999987654 3567899999999999964200
Q ss_pred HHHHHHhhcCCCCCCcEEEEEEecceeeeeccCCcccccccCCCCcEEEEEcCCCCCCCceEEEeeeccccccccccccc
Q 002523 555 LIDALSTKCFLRNHEKLLVAEIYRSKIFRVLDEPSDLLGLIRDEDKLVAYRLPKDSETPSLVLFMHERKEESCHLGRLSL 634 (912)
Q Consensus 555 l~~~l~~~~~~~~~~~l~~~ei~~~~i~~~~~~~~~~~~~i~~~d~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 634 (912)
.+.
T Consensus 292 -------------------------------~~~---------------------------------------------- 294 (440)
T cd02669 292 -------------------------------KDG---------------------------------------------- 294 (440)
T ss_pred -------------------------------ccc----------------------------------------------
Confidence 000
Q ss_pred ceeeeccceEEEcCCCCChhHHHHHHHHhcCCccCCCCCCCCcccccCCCCCCCcccccccccccCCCCCCCCCCCCCCC
Q 002523 635 EWKIFGTPLVGRLSDLTNGSDIRKLFLKLLDPFLMPVGDDSDFSDEAGKIDNGDSIVEDVTSSRVSDNDAVSDSSEAGDE 714 (912)
Q Consensus 635 ~~~~fg~P~~~~v~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 714 (912)
. ..
T Consensus 295 ------------------------------------~---------------------------------~~-------- 297 (440)
T cd02669 295 ------------------------------------N---------------------------------EE-------- 297 (440)
T ss_pred ------------------------------------c---------------------------------cc--------
Confidence 0 00
Q ss_pred CCCCCceeEEEecCCCCcccccCCCCCcCCCCCCeEEEEecChhhHhhhhhhhhhhhhhccccccccCCCCCccCHHHHH
Q 002523 715 PHLSDDFQFYRLDSIRPTEIKMNEPLSISDFAKPLTIHVQWAEKMIEKYDTCLLSSLMEVCKPQLFTRMPPESVSLYKCL 794 (912)
Q Consensus 715 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~isL~dCL 794 (912)
..+ +.++|++||
T Consensus 298 ------------------------------------------------------~~l--------------~~~~l~e~L 309 (440)
T cd02669 298 ------------------------------------------------------NII--------------PQVPLKQLL 309 (440)
T ss_pred ------------------------------------------------------ccc--------------CcccHHHHH
Confidence 000 235899999
Q ss_pred HHhhCcccCCCCCCCCCCCcccccceEEEEEeecCCceeEEEEeeeEEcCceecccceEEecCCCCCCCCcccccCC--C
Q 002523 795 EAFLKEEPLGPEDMWYCPRCKKHWQASKKLDLWRSPDILVIHLKRFSFSRYFKSKLDTYVDFPIDDLDLSNYVCCKN--S 872 (912)
Q Consensus 795 ~~F~~~E~L~~~d~wyC~~Ck~~~~AtKk~~l~~lP~iLiIHLKRF~~~~~~~~Ki~~~V~FPi~~LDls~~v~~~~--~ 872 (912)
+. |.|++|+..+.|+|++.|++||+|||||||||.++...+.|+.+.|+||++.|||++|+..+. .
T Consensus 310 ~k------------y~~~~c~~~~~a~k~~~I~~LP~vLiihLKRF~~~~~~~~K~~t~V~FP~~~LDm~~y~~~~~~~~ 377 (440)
T cd02669 310 KK------------YDGKTETELKDSLKRYLISRLPKYLIFHIKRFSKNNFFKEKNPTIVNFPIKNLDLSDYVHFDKPSL 377 (440)
T ss_pred Hh------------cCCccceecccceEEEEEeeCCcEEEEEEecccCCCCccccCCCEEECCCCccchhhhhCcccccc
Confidence 75 457788888999999999999999999999999988778999999999986799999996432 1
Q ss_pred CCCccEEEEEEEEeeecC-CCceEEEEEEe---CCeEEEE
Q 002523 873 QLSNRYVLYAISNHYGGM-GGGHYTAFVDV---SCVYSFH 908 (912)
Q Consensus 873 ~~~~~YdL~AVinH~G~l-~gGHYtAy~k~---~~~~~f~ 908 (912)
..+..|+|+|||+|.|++ ++|||+||+|+ +.||.||
T Consensus 378 ~~~~~Y~L~avI~H~G~~~~sGHY~a~v~~~~~~~W~~fd 417 (440)
T cd02669 378 NLSTKYNLVANIVHEGTPQEDGTWRVQLRHKSTNKWFEIQ 417 (440)
T ss_pred CCCceEEEEEEEEEeccCCCCeeEEEEEEcCCCCeEEEEE
Confidence 367899999999999987 99999999996 4588886
No 10
>cd02667 Peptidase_C19K A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.8e-51 Score=449.24 Aligned_cols=220 Identities=39% Similarity=0.689 Sum_probs=199.2
Q ss_pred ccccCCCcchHHHHHHHHhCChHHHHHHHhhcccccccCCCCCCchHHHHHHHHHHHHhcCCCCCccChHHHHHHHhhhC
Q 002523 341 GLRNLGNTCFMNSAIQCLAHTPEIVDYFLGDYQKEINYENPLGLNGELALAFGDLLRKLWAPGGIPVAPRMFKLKLANFA 420 (912)
Q Consensus 341 GL~NlGNTCYmNSvLQ~L~~~p~f~~~ll~~~~~~~~~~n~l~~~~~l~~~l~~L~~~l~~~~~~~i~P~~~~~~l~~~~ 420 (912)
||.|+||||||||+||||+|+|+|+++++. +|..|+..++...
T Consensus 1 Gl~N~GntCy~NsvLQ~L~~~~~~~~~~l~-------------------------------------~P~~~~~~l~~~~ 43 (279)
T cd02667 1 GLSNLGNTCFFNAVMQNLSQTPALRELLSE-------------------------------------TPKELFSQVCRKA 43 (279)
T ss_pred CCcCCCCchHHHHHHHHHhcCHHHHHHHHH-------------------------------------CHHHHHHHHHHhh
Confidence 999999999999999999999999999863 7889999999999
Q ss_pred CCCCCCCcCCHHHHHHHHHHHHHHHhhhcccCCccccccCCCCChHHHHHHHHHhhhcCCCccccccccEEEEEEEecCC
Q 002523 421 PQFSGYNQHDSQEFLAFLLDGLHEDLNRVKCKPYLEAKDAEGQPEEEVAEEYWRNHRARNDSIIVDLCQGQYRSMLVCPV 500 (912)
Q Consensus 421 ~~F~~~~QqDA~EfL~~LLd~L~eel~~~~~k~~~~~~d~~~~~~~~~a~e~w~~~~~~~~SiI~~lF~G~~~s~l~C~~ 500 (912)
|.|.+++||||||||.+|||.|| ++|.++|.|++.++++|..
T Consensus 44 ~~f~~~~QqDA~Efl~~lld~l~--------------------------------------~~i~~~F~G~~~~~i~C~~ 85 (279)
T cd02667 44 PQFKGYQQQDSHELLRYLLDGLR--------------------------------------TFIDSIFGGELTSTIMCES 85 (279)
T ss_pred HhhcCCchhhHHHHHHHHHHHHH--------------------------------------HhhhhhcceEEEEEEEcCC
Confidence 99999999999999999999998 1377899999999999999
Q ss_pred CCCeeeeeecceeEEecCCCCCccceEEEEEcCCCCCCCeeeEEEeCCCCCHHHHHHHHHhhcCCCCCCcEEEEEEecce
Q 002523 501 CNKVSVTFDPLMYLSLPIPSTTMRTMTVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALSTKCFLRNHEKLLVAEIYRSK 580 (912)
Q Consensus 501 C~~~s~~~e~F~~LsL~Ip~~~~~~~~v~~~~~d~~~~p~~~~v~v~k~~~~~~l~~~l~~~~~~~~~~~l~~~ei~~~~ 580 (912)
|++.+.+.|+|+.|+||+|....
T Consensus 86 C~~~s~~~E~f~~L~Lp~~~~~~--------------------------------------------------------- 108 (279)
T cd02667 86 CGTVSLVYEPFLDLSLPRSDEIK--------------------------------------------------------- 108 (279)
T ss_pred CCCEeCccccceEEecCCCcccC---------------------------------------------------------
Confidence 99999999999999998763100
Q ss_pred eeeeccCCcccccccCCCCcEEEEEcCCCCCCCceEEEeeecccccccccccccceeeeccceEEEcCCCCChhHHHHHH
Q 002523 581 IFRVLDEPSDLLGLIRDEDKLVAYRLPKDSETPSLVLFMHERKEESCHLGRLSLEWKIFGTPLVGRLSDLTNGSDIRKLF 660 (912)
Q Consensus 581 i~~~~~~~~~~~~~i~~~d~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~v~~~~~~~~l~~~~ 660 (912)
T Consensus 109 -------------------------------------------------------------------------------- 108 (279)
T cd02667 109 -------------------------------------------------------------------------------- 108 (279)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhcCCccCCCCCCCCcccccCCCCCCCcccccccccccCCCCCCCCCCCCCCCCCCCCceeEEEecCCCCcccccCCCC
Q 002523 661 LKLLDPFLMPVGDDSDFSDEAGKIDNGDSIVEDVTSSRVSDNDAVSDSSEAGDEPHLSDDFQFYRLDSIRPTEIKMNEPL 740 (912)
Q Consensus 661 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 740 (912)
T Consensus 109 -------------------------------------------------------------------------------- 108 (279)
T cd02667 109 -------------------------------------------------------------------------------- 108 (279)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcCCCCCCeEEEEecChhhHhhhhhhhhhhhhhccccccccCCCCCccCHHHHHHHhhCcccCCCCCCCCCCCcccccce
Q 002523 741 SISDFAKPLTIHVQWAEKMIEKYDTCLLSSLMEVCKPQLFTRMPPESVSLYKCLEAFLKEEPLGPEDMWYCPRCKKHWQA 820 (912)
Q Consensus 741 ~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~isL~dCL~~F~~~E~L~~~d~wyC~~Ck~~~~A 820 (912)
..++|++||+.|+++|.|.++|.|+|++|++ |
T Consensus 109 ---------------------------------------------~~~sL~~~L~~~~~~E~l~~~~~~~C~~C~~---a 140 (279)
T cd02667 109 ---------------------------------------------SECSIESCLKQFTEVEILEGNNKFACENCTK---A 140 (279)
T ss_pred ---------------------------------------------CCCCHHHHHHhhcCeeEecCCCcccCCccCc---e
Confidence 1248999999999999999999999999987 9
Q ss_pred EEEEEeecCCceeEEEEeeeEEcCc-eecccceEEecCCCCCCCCcccccC----CCCCCccEEEEEEEEeeecCCCceE
Q 002523 821 SKKLDLWRSPDILVIHLKRFSFSRY-FKSKLDTYVDFPIDDLDLSNYVCCK----NSQLSNRYVLYAISNHYGGMGGGHY 895 (912)
Q Consensus 821 tKk~~l~~lP~iLiIHLKRF~~~~~-~~~Ki~~~V~FPi~~LDls~~v~~~----~~~~~~~YdL~AVinH~G~l~gGHY 895 (912)
+|+..|+++|+||+||||||.|+.. ...|+++.|+|| +.|||++|+..+ .......|+|+|||+|.|++.+|||
T Consensus 141 ~k~~~i~~~P~~Lii~LkRF~~~~~~~~~Ki~~~v~fP-~~Ldl~~~~~~~~~~~~~~~~~~Y~L~~vi~H~G~~~~GHY 219 (279)
T cd02667 141 KKQYLISKLPPVLVIHLKRFQQPRSANLRKVSRHVSFP-EILDLAPFCDPKCNSSEDKSSVLYRLYGVVEHSGTMRSGHY 219 (279)
T ss_pred eeEeEhhhCCCeEEEEEeccccCcccCceecCceEeCC-CccchhhccCccccccccCCCceEEEEEEEEEeCCCCCCEe
Confidence 9999999999999999999999854 578999999999 699999999762 1235689999999999998899999
Q ss_pred EEEEEe
Q 002523 896 TAFVDV 901 (912)
Q Consensus 896 tAy~k~ 901 (912)
+||+|.
T Consensus 220 ~a~v~~ 225 (279)
T cd02667 220 VAYVKV 225 (279)
T ss_pred EEEEEc
Confidence 999996
No 11
>cd02664 Peptidase_C19H A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=9.1e-51 Score=453.41 Aligned_cols=246 Identities=29% Similarity=0.464 Sum_probs=210.8
Q ss_pred ccccCCCcchHHHHHHHHhCChHHHHHHHhhcccccccCCCCCCchHHHHHHHHHHHHhcCCCCCccChHH-HHHHHhhh
Q 002523 341 GLRNLGNTCFMNSAIQCLAHTPEIVDYFLGDYQKEINYENPLGLNGELALAFGDLLRKLWAPGGIPVAPRM-FKLKLANF 419 (912)
Q Consensus 341 GL~NlGNTCYmNSvLQ~L~~~p~f~~~ll~~~~~~~~~~n~l~~~~~l~~~l~~L~~~l~~~~~~~i~P~~-~~~~l~~~ 419 (912)
||.|+||||||||+||||+++|+||+++++...... .....+..+|+.++..|..+...++.|.. ++..+.
T Consensus 1 GL~NlGnTCY~NS~LQ~L~~~~~fr~~ll~~~~~~~------~~~~~~~~~L~~lf~~l~~~~~~~~~~~~~~l~~~~-- 72 (327)
T cd02664 1 GLINLGNTCYMNSVLQALFMAKDFRRQVLSLNLPRL------GDSQSVMKKLQLLQAHLMHTQRRAEAPPDYFLEASR-- 72 (327)
T ss_pred CCcCCcccHHHHHHHHHHHCcHHHHHHHHcCCcccc------CCcchHHHHHHHHHHHHhhcCCcccCCHHHHHHHhc--
Confidence 899999999999999999999999999986422111 11235778888998888666666777776 666543
Q ss_pred CCCCCCCCcCCHHHHHHHHHHHHHHHhhhcccCCccccccCCCCChHHHHHHHHHhhhcCCCccccccccEEEEEEEecC
Q 002523 420 APQFSGYNQHDSQEFLAFLLDGLHEDLNRVKCKPYLEAKDAEGQPEEEVAEEYWRNHRARNDSIIVDLCQGQYRSMLVCP 499 (912)
Q Consensus 420 ~~~F~~~~QqDA~EfL~~LLd~L~eel~~~~~k~~~~~~d~~~~~~~~~a~e~w~~~~~~~~SiI~~lF~G~~~s~l~C~ 499 (912)
.+.|..++|||||||+.+||+.|+ ++|.++|+|++.++++|.
T Consensus 73 ~~~f~~~~QqDa~EFl~~lLd~l~--------------------------------------~~i~~~F~G~~~~~i~C~ 114 (327)
T cd02664 73 PPWFTPGSQQDCSEYLRYLLDRLH--------------------------------------TLIEKMFGGKLSTTIRCL 114 (327)
T ss_pred ccccCCCCcCCHHHHHHHHHHHHH--------------------------------------HHHHhhCcEEeEeEEEcC
Confidence 478999999999999999999998 137789999999999999
Q ss_pred CCCCeeeeeecceeEEecCCCCCccceEEEEEcCCCCCCCeeeEEEeCCCCCHHHHHHHHHhhcCCCCCCcEEEEEEecc
Q 002523 500 VCNKVSVTFDPLMYLSLPIPSTTMRTMTVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALSTKCFLRNHEKLLVAEIYRS 579 (912)
Q Consensus 500 ~C~~~s~~~e~F~~LsL~Ip~~~~~~~~v~~~~~d~~~~p~~~~v~v~k~~~~~~l~~~l~~~~~~~~~~~l~~~ei~~~ 579 (912)
.|++++.+.|+|..|+|+||
T Consensus 115 ~C~~~s~~~e~f~~l~L~i~------------------------------------------------------------ 134 (327)
T cd02664 115 NCNSTSARTERFRDLDLSFP------------------------------------------------------------ 134 (327)
T ss_pred CCCCEecccccceeeecCCC------------------------------------------------------------
Confidence 99999999999999999876
Q ss_pred eeeeeccCCcccccccCCCCcEEEEEcCCCCCCCceEEEeeecccccccccccccceeeeccceEEEcCCCCChhHHHHH
Q 002523 580 KIFRVLDEPSDLLGLIRDEDKLVAYRLPKDSETPSLVLFMHERKEESCHLGRLSLEWKIFGTPLVGRLSDLTNGSDIRKL 659 (912)
Q Consensus 580 ~i~~~~~~~~~~~~~i~~~d~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~v~~~~~~~~l~~~ 659 (912)
T Consensus 135 -------------------------------------------------------------------------------- 134 (327)
T cd02664 135 -------------------------------------------------------------------------------- 134 (327)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhcCCccCCCCCCCCcccccCCCCCCCcccccccccccCCCCCCCCCCCCCCCCCCCCceeEEEecCCCCcccccCCC
Q 002523 660 FLKLLDPFLMPVGDDSDFSDEAGKIDNGDSIVEDVTSSRVSDNDAVSDSSEAGDEPHLSDDFQFYRLDSIRPTEIKMNEP 739 (912)
Q Consensus 660 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 739 (912)
T Consensus 135 -------------------------------------------------------------------------------- 134 (327)
T cd02664 135 -------------------------------------------------------------------------------- 134 (327)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcCCCCCCeEEEEecChhhHhhhhhhhhhhhhhccccccccCCCCCccCHHHHHHHhhCcccCCCCCCCCCCCcccccc
Q 002523 740 LSISDFAKPLTIHVQWAEKMIEKYDTCLLSSLMEVCKPQLFTRMPPESVSLYKCLEAFLKEEPLGPEDMWYCPRCKKHWQ 819 (912)
Q Consensus 740 ~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~isL~dCL~~F~~~E~L~~~d~wyC~~Ck~~~~ 819 (912)
+|++||+.|+++|.|.++|.|+|++|++++.
T Consensus 135 -------------------------------------------------sl~~~l~~~~~~E~l~g~n~~~C~~C~~~~~ 165 (327)
T cd02664 135 -------------------------------------------------SVQDLLNYFLSPEKLTGDNQYYCEKCASLQD 165 (327)
T ss_pred -------------------------------------------------CHHHHHHHhcCeeEccCCCceeCCccCCccc
Confidence 3668999999999999999999999999999
Q ss_pred eEEEEEeecCCceeEEEEeeeEEcC--ceecccceEEecCCCCCCCCcccccC------------------CCCCCccEE
Q 002523 820 ASKKLDLWRSPDILVIHLKRFSFSR--YFKSKLDTYVDFPIDDLDLSNYVCCK------------------NSQLSNRYV 879 (912)
Q Consensus 820 AtKk~~l~~lP~iLiIHLKRF~~~~--~~~~Ki~~~V~FPi~~LDls~~v~~~------------------~~~~~~~Yd 879 (912)
|+|+..|.++|+|||||||||.|+. ..+.||++.|.|| ..|||.+|+... ....+..|+
T Consensus 166 a~k~~~i~~lP~vLii~LkRF~~~~~~~~~~Ki~~~v~fp-~~ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~ 244 (327)
T cd02664 166 AEKEMKVTGAPEYLILTLLRFSYDQKTHVREKIMDNVSIN-EVLSLPVRVESKSSESPLEKKEEESGDDGELVTRQVHYR 244 (327)
T ss_pred eeEEEEcccCChhhEEEeeeeEEccccCcceecCceEecC-CEEecCccccccccccccccccccccccccccCCCceEE
Confidence 9999999999999999999999975 3468999999999 589999997421 112467899
Q ss_pred EEEEEEeee-cCCCceEEEEEEeC
Q 002523 880 LYAISNHYG-GMGGGHYTAFVDVS 902 (912)
Q Consensus 880 L~AVinH~G-~l~gGHYtAy~k~~ 902 (912)
|+|||+|.| ++++||||||+|.+
T Consensus 245 L~~Vi~H~G~~~~~GHY~a~~r~~ 268 (327)
T cd02664 245 LYAVVVHSGYSSESGHYFTYARDQ 268 (327)
T ss_pred EEEEEEEccCCCCCcceEEEEecC
Confidence 999999999 69999999999973
No 12
>cd02657 Peptidase_C19A A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2.2e-49 Score=438.58 Aligned_cols=262 Identities=31% Similarity=0.389 Sum_probs=224.2
Q ss_pred ccccCCCcchHHHHHHHHhCChHHHHHHHhhcccccccCCCCCCchHHHHHHHHHHHHhcCCCCCccChHHHHHHHhhhC
Q 002523 341 GLRNLGNTCFMNSAIQCLAHTPEIVDYFLGDYQKEINYENPLGLNGELALAFGDLLRKLWAPGGIPVAPRMFKLKLANFA 420 (912)
Q Consensus 341 GL~NlGNTCYmNSvLQ~L~~~p~f~~~ll~~~~~~~~~~n~l~~~~~l~~~l~~L~~~l~~~~~~~i~P~~~~~~l~~~~ 420 (912)
||.|+||||||||+||||+|+|+|++++++.-... .+......+++.+|+.|+..|+.+. .+++|..|+..+++..
T Consensus 1 Gl~N~GntCy~NsvLQ~L~~~~~f~~~~~~~~~~~---~~~~~~~~~~~~~l~~L~~~l~~~~-~~i~p~~~~~~l~~~~ 76 (305)
T cd02657 1 GLTNLGNTCYLNSTLQCLRSVPELRDALKNYNPAR---RGANQSSDNLTNALRDLFDTMDKKQ-EPVPPIEFLQLLRMAF 76 (305)
T ss_pred CcccccchhHHHHHHHHHhCCHHHHHHHHhccccc---cccccchhHHHHHHHHHHHHHHhCC-CcCCcHHHHHHHHHHC
Confidence 89999999999999999999999999998532110 0122235689999999999998765 4899999999999999
Q ss_pred CCCC------CCCcCCHHHHHHHHHHHHHHHhhhcccCCccccccCCCCChHHHHHHHHHhhhcCCCccccccccEEEEE
Q 002523 421 PQFS------GYNQHDSQEFLAFLLDGLHEDLNRVKCKPYLEAKDAEGQPEEEVAEEYWRNHRARNDSIIVDLCQGQYRS 494 (912)
Q Consensus 421 ~~F~------~~~QqDA~EfL~~LLd~L~eel~~~~~k~~~~~~d~~~~~~~~~a~e~w~~~~~~~~SiI~~lF~G~~~s 494 (912)
|.|. +++|||||||+.+|||.||++++.. ....++|.++|+|++.+
T Consensus 77 ~~f~~~~~~~~~~QqDA~EFl~~lld~L~~~~~~~----------------------------~~~~~~i~~~F~g~~~~ 128 (305)
T cd02657 77 PQFAEKQNQGGYAQQDAEECWSQLLSVLSQKLPGA----------------------------GSKGSFIDQLFGIELET 128 (305)
T ss_pred cCcccccCCCCccccCHHHHHHHHHHHHHHHhccc----------------------------CCCCcHHHHhhceEEEE
Confidence 9994 5699999999999999999987531 12456799999999999
Q ss_pred EEecCCCC-CeeeeeecceeEEecCCCCCccceEEEEEcCCCCCCCeeeEEEeCCCCCHHHHHHHHHhhcCCCCCCcEEE
Q 002523 495 MLVCPVCN-KVSVTFDPLMYLSLPIPSTTMRTMTVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALSTKCFLRNHEKLLV 573 (912)
Q Consensus 495 ~l~C~~C~-~~s~~~e~F~~LsL~Ip~~~~~~~~v~~~~~d~~~~p~~~~v~v~k~~~~~~l~~~l~~~~~~~~~~~l~~ 573 (912)
+++|..|+ .++.++|+|++|+|+||...
T Consensus 129 ~~~C~~C~~~~~~~~e~f~~Lsl~i~~~~--------------------------------------------------- 157 (305)
T cd02657 129 KMKCTESPDEEEVSTESEYKLQCHISITT--------------------------------------------------- 157 (305)
T ss_pred EEEcCCCCCCCccccccceEEEeecCCCc---------------------------------------------------
Confidence 99999999 89999999999999998421
Q ss_pred EEEecceeeeeccCCcccccccCCCCcEEEEEcCCCCCCCceEEEeeecccccccccccccceeeeccceEEEcCCCCCh
Q 002523 574 AEIYRSKIFRVLDEPSDLLGLIRDEDKLVAYRLPKDSETPSLVLFMHERKEESCHLGRLSLEWKIFGTPLVGRLSDLTNG 653 (912)
Q Consensus 574 ~ei~~~~i~~~~~~~~~~~~~i~~~d~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~v~~~~~~ 653 (912)
T Consensus 158 -------------------------------------------------------------------------------- 157 (305)
T cd02657 158 -------------------------------------------------------------------------------- 157 (305)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHHHhcCCccCCCCCCCCcccccCCCCCCCcccccccccccCCCCCCCCCCCCCCCCCCCCceeEEEecCCCCcc
Q 002523 654 SDIRKLFLKLLDPFLMPVGDDSDFSDEAGKIDNGDSIVEDVTSSRVSDNDAVSDSSEAGDEPHLSDDFQFYRLDSIRPTE 733 (912)
Q Consensus 654 ~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 733 (912)
T Consensus 158 -------------------------------------------------------------------------------- 157 (305)
T cd02657 158 -------------------------------------------------------------------------------- 157 (305)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCCcCCCCCCeEEEEecChhhHhhhhhhhhhhhhhccccccccCCCCCccCHHHHHHHhhCcccCCCCCCCCCCC
Q 002523 734 IKMNEPLSISDFAKPLTIHVQWAEKMIEKYDTCLLSSLMEVCKPQLFTRMPPESVSLYKCLEAFLKEEPLGPEDMWYCPR 813 (912)
Q Consensus 734 ~~~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~isL~dCL~~F~~~E~L~~~d~wyC~~ 813 (912)
...+|++||+.++++|.. ..|+.
T Consensus 158 ----------------------------------------------------~~~~l~~~L~~~~~~~~~-----~~~~~ 180 (305)
T cd02657 158 ----------------------------------------------------EVNYLQDGLKKGLEEEIE-----KHSPT 180 (305)
T ss_pred ----------------------------------------------------ccccHHHHHHHhhhhhhh-----hcCcc
Confidence 012689999999987764 47999
Q ss_pred cccccceEEEEEeecCCceeEEEEeeeEEcCc--eecccceEEecCCCCCCCCcccccCCCCCCccEEEEEEEEeee-cC
Q 002523 814 CKKHWQASKKLDLWRSPDILVIHLKRFSFSRY--FKSKLDTYVDFPIDDLDLSNYVCCKNSQLSNRYVLYAISNHYG-GM 890 (912)
Q Consensus 814 Ck~~~~AtKk~~l~~lP~iLiIHLKRF~~~~~--~~~Ki~~~V~FPi~~LDls~~v~~~~~~~~~~YdL~AVinH~G-~l 890 (912)
|+....++|+..|.++|+|||||||||.|+.. ...|+++.|.|| ..|||++|+. .+..|+|+|||+|.| ++
T Consensus 181 ~~~~~~~~k~~~i~~lP~vLii~LkRF~~~~~~~~~~Ki~~~v~fP-~~Ldl~~~~~-----~~~~Y~L~~vI~H~G~~~ 254 (305)
T cd02657 181 LGRDAIYTKTSRISRLPKYLTVQFVRFFWKRDIQKKAKILRKVKFP-FELDLYELCT-----PSGYYELVAVITHQGRSA 254 (305)
T ss_pred cCCCceEEEEEEeccCCcEEEEEEECCccccccCceeecCcEEECC-ceEecccccC-----CCCcEEEEEEEEecCCCC
Confidence 99999999999999999999999999999754 467999999999 5899999997 346899999999999 79
Q ss_pred CCceEEEEEEeC---CeEEEE
Q 002523 891 GGGHYTAFVDVS---CVYSFH 908 (912)
Q Consensus 891 ~gGHYtAy~k~~---~~~~f~ 908 (912)
.+|||+||+|.+ .||.||
T Consensus 255 ~~GHY~~~~~~~~~~~W~~fd 275 (305)
T cd02657 255 DSGHYVAWVRRKNDGKWIKFD 275 (305)
T ss_pred CCcEEEEEEEcCCCCeEEEEE
Confidence 999999999986 488776
No 13
>KOG1868 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.1e-51 Score=473.26 Aligned_cols=313 Identities=43% Similarity=0.676 Sum_probs=262.7
Q ss_pred cccccccccccCCCcchHHHHHHHHhCChHHHHHHHh-hcccccccCCCCCCchHHHHHHHHHHHHhcCC-CCCccChHH
Q 002523 334 VCLLGLTGLRNLGNTCFMNSAIQCLAHTPEIVDYFLG-DYQKEINYENPLGLNGELALAFGDLLRKLWAP-GGIPVAPRM 411 (912)
Q Consensus 334 ~~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~ll~-~~~~~~~~~n~l~~~~~l~~~l~~L~~~l~~~-~~~~i~P~~ 411 (912)
....|.+||.|+|||||||++||||+.++.|+.+++. .|...++.++..+ ...+..++..++..+|.. ...++.|+.
T Consensus 296 ~~~~~~~GL~NlGntC~mn~ilQCl~~t~~lr~~~L~~~~~~~i~~~~~~~-~~~l~~~~~~~l~~~~~~~~~~s~~P~~ 374 (653)
T KOG1868|consen 296 TDVFGCPGLRNLGNTCFMNSILQCLFSTGELRDNFLSIKLPQFINLDLFFG-AEELESACAKLLQKLWHGHGQFSVLPRR 374 (653)
T ss_pred ccccCCceeccCCcchHHHHHHHHHhhccccchhhhhHHHHHHcccCCccc-chhHHHHHHHhhhhhccCCCceecCcHH
Confidence 3457999999999999999999999999999977775 4777777444433 356777777777777654 677899999
Q ss_pred HHHHHhhhCCCCCCCCcCCHHHHHHHHHHHHHHHhhhcccCCc-cccc-----cCCCCChHHHHHHHHHhhhcCCCcccc
Q 002523 412 FKLKLANFAPQFSGYNQHDSQEFLAFLLDGLHEDLNRVKCKPY-LEAK-----DAEGQPEEEVAEEYWRNHRARNDSIIV 485 (912)
Q Consensus 412 ~~~~l~~~~~~F~~~~QqDA~EfL~~LLd~L~eel~~~~~k~~-~~~~-----d~~~~~~~~~a~e~w~~~~~~~~SiI~ 485 (912)
|+..+++..|.|.++.|||||||+.++++.||++++....++. .... +....++...+...|..+....++.|.
T Consensus 375 f~~~~~~y~~~~~~~~Qqd~qEfl~~lld~Lhe~ln~~~~~~~~~p~~~~~~~~~~~~~~s~~s~~~w~~~~~~~d~~i~ 454 (653)
T KOG1868|consen 375 FIRVLKRYSPNFSGYSQQDAQEFLIFLLDRLHEELNENTRPLKLSPLMGSYLLSELELSDSKKSLAEWLRYLEEEDSKIG 454 (653)
T ss_pred HHHHHhhcccccccccccchHHHHHHHHHhhhHhhhccCCCCccCccccccccccccccccchhHHHHHhhccccchHHH
Confidence 9999999999999999999999999999999999998654211 1111 111223344455678888878888899
Q ss_pred ccccEEEEEEEecCCCCCeeeeeecceeEEecCCCCCccceEEEEEcCCCCCCCeeeEEEeCCCCCHHHHHHHHHhhcCC
Q 002523 486 DLCQGQYRSMLVCPVCNKVSVTFDPLMYLSLPIPSTTMRTMTVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALSTKCFL 565 (912)
Q Consensus 486 ~lF~G~~~s~l~C~~C~~~s~~~e~F~~LsL~Ip~~~~~~~~v~~~~~d~~~~p~~~~v~v~k~~~~~~l~~~l~~~~~~ 565 (912)
++|.|++++.++|..|++.+.++++|++|+||||.....
T Consensus 455 ~lf~gQ~ks~Lkc~~cg~~s~t~~~f~~lslpIp~~~~~----------------------------------------- 493 (653)
T KOG1868|consen 455 DLFVGQLKSYLKCQACGYTSTTFETFTDLSLPIPKKGFA----------------------------------------- 493 (653)
T ss_pred HHHHHHHHhheehhhcCCcceeeecceeeEEeccccccc-----------------------------------------
Confidence 999999999999999999999999999999999953200
Q ss_pred CCCCcEEEEEEecceeeeeccCCcccccccCCCCcEEEEEcCCCCCCCceEEEeeecccccccccccccceeeeccceEE
Q 002523 566 RNHEKLLVAEIYRSKIFRVLDEPSDLLGLIRDEDKLVAYRLPKDSETPSLVLFMHERKEESCHLGRLSLEWKIFGTPLVG 645 (912)
Q Consensus 566 ~~~~~l~~~ei~~~~i~~~~~~~~~~~~~i~~~d~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~ 645 (912)
T Consensus 494 -------------------------------------------------------------------------------- 493 (653)
T KOG1868|consen 494 -------------------------------------------------------------------------------- 493 (653)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EcCCCCChhHHHHHHHHhcCCccCCCCCCCCcccccCCCCCCCcccccccccccCCCCCCCCCCCCCCCCCCCCceeEEE
Q 002523 646 RLSDLTNGSDIRKLFLKLLDPFLMPVGDDSDFSDEAGKIDNGDSIVEDVTSSRVSDNDAVSDSSEAGDEPHLSDDFQFYR 725 (912)
Q Consensus 646 ~v~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 725 (912)
T Consensus 494 -------------------------------------------------------------------------------- 493 (653)
T KOG1868|consen 494 -------------------------------------------------------------------------------- 493 (653)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ecCCCCcccccCCCCCcCCCCCCeEEEEecChhhHhhhhhhhhhhhhhccccccccCCCCCccCHHHHHHHhhCcccCCC
Q 002523 726 LDSIRPTEIKMNEPLSISDFAKPLTIHVQWAEKMIEKYDTCLLSSLMEVCKPQLFTRMPPESVSLYKCLEAFLKEEPLGP 805 (912)
Q Consensus 726 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~isL~dCL~~F~~~E~L~~ 805 (912)
...++|++|+..||+.|.|++
T Consensus 494 -----------------------------------------------------------~~~~~L~~C~~~ft~~ekle~ 514 (653)
T KOG1868|consen 494 -----------------------------------------------------------GGKVSLEDCLSLFTKEEKLEG 514 (653)
T ss_pred -----------------------------------------------------------ccccchHhhhccccchhhccc
Confidence 012589999999999999999
Q ss_pred CCCCCCCCcccccceE--EEEEeecCCceeEEEEeeeEEcCceecccceEEecCCCCCCCCcccccCCCCCCccEEEEEE
Q 002523 806 EDMWYCPRCKKHWQAS--KKLDLWRSPDILVIHLKRFSFSRYFKSKLDTYVDFPIDDLDLSNYVCCKNSQLSNRYVLYAI 883 (912)
Q Consensus 806 ~d~wyC~~Ck~~~~At--Kk~~l~~lP~iLiIHLKRF~~~~~~~~Ki~~~V~FPi~~LDls~~v~~~~~~~~~~YdL~AV 883 (912)
+++|.||+|++.+.++ |++.||++|+|||||||||.+++....|..+.|+||+..+|+.+++..+.. ....|+||||
T Consensus 515 ~~~w~Cp~c~~~~~~~~lK~~~i~~lp~iLiihL~Rf~~~~~~~~k~~~~v~~~~~~~~~~~~~~~~~~-~~~~Y~L~aV 593 (653)
T KOG1868|consen 515 DEAWLCPRCKHKESSKTLKKLTILRLPKILIIHLKRFSSDGNSFNKLSTGVDFPLREADLSPRFAEKGN-NPKSYRLYAV 593 (653)
T ss_pred ccccCCccccCcccccccceeeeecCCHHHHHHHHHhccCcccccccceeeccchHhhhhchhccccCC-CccceeeEEE
Confidence 9999999999998886 999999999999999999999988889999999999989999998877665 5666999999
Q ss_pred EEeeecCCCceEEEEEEe---CCeEEEE
Q 002523 884 SNHYGGMGGGHYTAFVDV---SCVYSFH 908 (912)
Q Consensus 884 inH~G~l~gGHYtAy~k~---~~~~~f~ 908 (912)
+||+|+++||||||||+. +.|+.||
T Consensus 594 v~H~Gtl~sGHYta~~~~~~~~~W~~fd 621 (653)
T KOG1868|consen 594 VNHSGTLNSGHYTAYVYKNEKQRWFTFD 621 (653)
T ss_pred EeccCcccCCceEEEEeecCCCceEEec
Confidence 999999999999999976 4588776
No 14
>cd02658 Peptidase_C19B A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=8.6e-49 Score=435.08 Aligned_cols=267 Identities=31% Similarity=0.470 Sum_probs=220.0
Q ss_pred ccccCCCcchHHHHHHHHhCChHHHHHHHhhcccccccCCCCCCchHHHHHHHHHHHHhcCCC--------------CCc
Q 002523 341 GLRNLGNTCFMNSAIQCLAHTPEIVDYFLGDYQKEINYENPLGLNGELALAFGDLLRKLWAPG--------------GIP 406 (912)
Q Consensus 341 GL~NlGNTCYmNSvLQ~L~~~p~f~~~ll~~~~~~~~~~n~l~~~~~l~~~l~~L~~~l~~~~--------------~~~ 406 (912)
||.|+||||||||+||||+|+|+|+++|+....... .+......++.++|++|+..|++.. ..+
T Consensus 1 GL~NlGNTCY~NsvLQ~L~~~~~f~~~l~~~~~~~~--~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 78 (311)
T cd02658 1 GLRNLGNSCYLNSVLQVLFSIPSFQWRYDDLENKFP--SDVVDPANDLNCQLIKLADGLLSGRYSKPASLKSENDPYQVG 78 (311)
T ss_pred CcccCCcchHHHHHHHHHHCCHHHHHHHhhhccccC--CCcCCccccHHHHHHHHHHHhcCCCcCCCccccccccccccc
Confidence 899999999999999999999999999976321111 1122234679999999999997643 347
Q ss_pred cChHHHHHHHhhhCCCCCCCCcCCHHHHHHHHHHHHHHHhhhcccCCccccccCCCCChHHHHHHHHHhhhcCCCccccc
Q 002523 407 VAPRMFKLKLANFAPQFSGYNQHDSQEFLAFLLDGLHEDLNRVKCKPYLEAKDAEGQPEEEVAEEYWRNHRARNDSIIVD 486 (912)
Q Consensus 407 i~P~~~~~~l~~~~~~F~~~~QqDA~EfL~~LLd~L~eel~~~~~k~~~~~~d~~~~~~~~~a~e~w~~~~~~~~SiI~~ 486 (912)
++|..|+.+++...|+|..++||||||||.+||+.||+++... ..+.+.+
T Consensus 79 i~p~~~~~~l~~~~~~f~~~~QqDa~Efl~~ll~~l~~~~~~~------------------------------~~~~~~~ 128 (311)
T cd02658 79 IKPSMFKALIGKGHPEFSTMRQQDALEFLLHLIDKLDRESFKN------------------------------LGLNPND 128 (311)
T ss_pred cCcHHHHHHHhccChhhcccccccHHHHHHHHHHHHHHhhccc------------------------------ccCCchh
Confidence 9999999999999999999999999999999999999887421 1234778
Q ss_pred cccEEEEEEEecCCCCCeeeeeecceeEEecCCCCCccceEEEEEcCCCCCCCeeeEEEeCCCCCHHHHHHHHHhhcCCC
Q 002523 487 LCQGQYRSMLVCPVCNKVSVTFDPLMYLSLPIPSTTMRTMTVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALSTKCFLR 566 (912)
Q Consensus 487 lF~G~~~s~l~C~~C~~~s~~~e~F~~LsL~Ip~~~~~~~~v~~~~~d~~~~p~~~~v~v~k~~~~~~l~~~l~~~~~~~ 566 (912)
+|+|.++++++|..|++++.+.|+|..|+|+||......
T Consensus 129 ~f~~~~~~~i~C~~C~~~s~~~e~~~~lsL~l~~~~~~~----------------------------------------- 167 (311)
T cd02658 129 LFKFMIEDRLECLSCKKVKYTSELSEILSLPVPKDEATE----------------------------------------- 167 (311)
T ss_pred heEEEeeEEEEcCCCCCEEEeecceeEEeeecccccccc-----------------------------------------
Confidence 999999999999999999999999999999999542000
Q ss_pred CCCcEEEEEEecceeeeeccCCcccccccCCCCcEEEEEcCCCCCCCceEEEeeecccccccccccccceeeeccceEEE
Q 002523 567 NHEKLLVAEIYRSKIFRVLDEPSDLLGLIRDEDKLVAYRLPKDSETPSLVLFMHERKEESCHLGRLSLEWKIFGTPLVGR 646 (912)
Q Consensus 567 ~~~~l~~~ei~~~~i~~~~~~~~~~~~~i~~~d~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~ 646 (912)
. . +
T Consensus 168 -~-----------------~-------------------------------------~---------------------- 170 (311)
T cd02658 168 -K-----------------E-------------------------------------E---------------------- 170 (311)
T ss_pred -c-----------------c-------------------------------------c----------------------
Confidence 0 0 0
Q ss_pred cCCCCChhHHHHHHHHhcCCccCCCCCCCCcccccCCCCCCCcccccccccccCCCCCCCCCCCCCCCCCCCCceeEEEe
Q 002523 647 LSDLTNGSDIRKLFLKLLDPFLMPVGDDSDFSDEAGKIDNGDSIVEDVTSSRVSDNDAVSDSSEAGDEPHLSDDFQFYRL 726 (912)
Q Consensus 647 v~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 726 (912)
.
T Consensus 171 -----------------------------------------------------------~-------------------- 171 (311)
T cd02658 171 -----------------------------------------------------------G-------------------- 171 (311)
T ss_pred -----------------------------------------------------------c--------------------
Confidence 0
Q ss_pred cCCCCcccccCCCCCcCCCCCCeEEEEecChhhHhhhhhhhhhhhhhccccccccCCCCCccCHHHHHHHhhCcccCCCC
Q 002523 727 DSIRPTEIKMNEPLSISDFAKPLTIHVQWAEKMIEKYDTCLLSSLMEVCKPQLFTRMPPESVSLYKCLEAFLKEEPLGPE 806 (912)
Q Consensus 727 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~isL~dCL~~F~~~E~L~~~ 806 (912)
......++|++||+.|+++|.+.
T Consensus 172 -------------------------------------------------------~~~~~~~sl~~~L~~~~~~e~i~-- 194 (311)
T cd02658 172 -------------------------------------------------------ELVYEPVPLEDCLKAYFAPETIE-- 194 (311)
T ss_pred -------------------------------------------------------cccCCCCCHHHHHHHHcCccccc--
Confidence 00002469999999999999995
Q ss_pred CCCCCCCcccccceEEEEEeecCCceeEEEEeeeEEc-CceecccceEEecCCCCCCCCcccccCCCCCCccEEEEEEEE
Q 002523 807 DMWYCPRCKKHWQASKKLDLWRSPDILVIHLKRFSFS-RYFKSKLDTYVDFPIDDLDLSNYVCCKNSQLSNRYVLYAISN 885 (912)
Q Consensus 807 d~wyC~~Ck~~~~AtKk~~l~~lP~iLiIHLKRF~~~-~~~~~Ki~~~V~FPi~~LDls~~v~~~~~~~~~~YdL~AVin 885 (912)
++|++|++++.|+|+..|.++|+|||||||||.++ .+...|+++.|.|| ..| .+..|+|+|||+
T Consensus 195 --~~C~~C~~~~~a~k~~~i~~lP~vLii~LkRF~~~~~~~~~Ki~~~v~~p-~~l------------~~~~Y~L~~vI~ 259 (311)
T cd02658 195 --DFCSTCKEKTTATKTTGFKTFPDYLVINMKRFQLLENWVPKKLDVPIDVP-EEL------------GPGKYELIAFIS 259 (311)
T ss_pred --ccccCCCCcccEEEEEEeecCCceEEEEeEEEEecCCCceEeeccccccC-CcC------------CCCcEEEEEEEE
Confidence 58999999999999999999999999999999995 55678999999999 455 335799999999
Q ss_pred eee-cCCCceEEEEEEeC-----CeEEEE
Q 002523 886 HYG-GMGGGHYTAFVDVS-----CVYSFH 908 (912)
Q Consensus 886 H~G-~l~gGHYtAy~k~~-----~~~~f~ 908 (912)
|.| ++++||||||+|.+ .||.||
T Consensus 260 H~G~~~~~GHY~~~vk~~~~~~~~W~~fn 288 (311)
T cd02658 260 HKGTSVHSGHYVAHIKKEIDGEGKWVLFN 288 (311)
T ss_pred ccCCCCCCcceEEEEeCCCCCCCCEEEec
Confidence 999 69999999999985 488886
No 15
>cd02661 Peptidase_C19E A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=6.3e-49 Score=433.93 Aligned_cols=278 Identities=36% Similarity=0.579 Sum_probs=237.3
Q ss_pred ccccccCCCcchHHHHHHHHhCChHHHHHHHhhcccccccCCCCCCchHHHHHHHHHHHHhcCCCCCccChHHHHHHHhh
Q 002523 339 LTGLRNLGNTCFMNSAIQCLAHTPEIVDYFLGDYQKEINYENPLGLNGELALAFGDLLRKLWAPGGIPVAPRMFKLKLAN 418 (912)
Q Consensus 339 ~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~ll~~~~~~~~~~n~l~~~~~l~~~l~~L~~~l~~~~~~~i~P~~~~~~l~~ 418 (912)
|+||.|+||||||||+||+|+|+|+|+++++..-+.. .. .....++.++|+.++..++.+....+.|..|..++..
T Consensus 1 ~~GL~N~gntCY~NsvLQ~L~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~l~~ 76 (304)
T cd02661 1 GAGLQNLGNTCFLNSVLQCLTHTPPLANYLLSREHSK-DC---CNEGFCMMCALEAHVERALASSGPGSAPRIFSSNLKQ 76 (304)
T ss_pred CCCccccCchhHHHHHHHHhhCCHHHHHHHhcchhhh-hc---cCCcchHHHHHHHHHHHHHhCCCCccChHHHHHHHHH
Confidence 5899999999999999999999999999997531111 00 1123468899999999998777889999999999999
Q ss_pred hCCCCCCCCcCCHHHHHHHHHHHHHHHhhhcccCCccccccCCCCChHHHHHHHHHhhhcCCCccccccccEEEEEEEec
Q 002523 419 FAPQFSGYNQHDSQEFLAFLLDGLHEDLNRVKCKPYLEAKDAEGQPEEEVAEEYWRNHRARNDSIIVDLCQGQYRSMLVC 498 (912)
Q Consensus 419 ~~~~F~~~~QqDA~EfL~~LLd~L~eel~~~~~k~~~~~~d~~~~~~~~~a~e~w~~~~~~~~SiI~~lF~G~~~s~l~C 498 (912)
..+.|..+.||||+|||.+|||.||+++.....+... ........++|.++|+|++.++++|
T Consensus 77 ~~~~f~~~~qqDa~Efl~~ll~~l~~~~~~~~~~~~~------------------~~~~~~~~~~i~~~F~g~~~~~~~C 138 (304)
T cd02661 77 ISKHFRIGRQEDAHEFLRYLLDAMQKACLDRFKKLKA------------------VDPSSQETTLVQQIFGGYLRSQVKC 138 (304)
T ss_pred HHHhhcCcchhhHHHHHHHHHHHHHHHHhhhcccccc------------------cCccccCCChhhhcCCcEEeeeEEe
Confidence 9999999999999999999999999886543221100 0112234678999999999999999
Q ss_pred CCCCCeeeeeecceeEEecCCCCCccceEEEEEcCCCCCCCeeeEEEeCCCCCHHHHHHHHHhhcCCCCCCcEEEEEEec
Q 002523 499 PVCNKVSVTFDPLMYLSLPIPSTTMRTMTVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALSTKCFLRNHEKLLVAEIYR 578 (912)
Q Consensus 499 ~~C~~~s~~~e~F~~LsL~Ip~~~~~~~~v~~~~~d~~~~p~~~~v~v~k~~~~~~l~~~l~~~~~~~~~~~l~~~ei~~ 578 (912)
..|+..+.++|+|+.|+|+||..
T Consensus 139 ~~C~~~s~~~e~~~~l~l~i~~~--------------------------------------------------------- 161 (304)
T cd02661 139 LNCKHVSNTYDPFLDLSLDIKGA--------------------------------------------------------- 161 (304)
T ss_pred CCCCCCcCccccceeeeeecCCC---------------------------------------------------------
Confidence 99999999999999999998831
Q ss_pred ceeeeeccCCcccccccCCCCcEEEEEcCCCCCCCceEEEeeecccccccccccccceeeeccceEEEcCCCCChhHHHH
Q 002523 579 SKIFRVLDEPSDLLGLIRDEDKLVAYRLPKDSETPSLVLFMHERKEESCHLGRLSLEWKIFGTPLVGRLSDLTNGSDIRK 658 (912)
Q Consensus 579 ~~i~~~~~~~~~~~~~i~~~d~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~v~~~~~~~~l~~ 658 (912)
T Consensus 162 -------------------------------------------------------------------------------- 161 (304)
T cd02661 162 -------------------------------------------------------------------------------- 161 (304)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhcCCccCCCCCCCCcccccCCCCCCCcccccccccccCCCCCCCCCCCCCCCCCCCCceeEEEecCCCCcccccCC
Q 002523 659 LFLKLLDPFLMPVGDDSDFSDEAGKIDNGDSIVEDVTSSRVSDNDAVSDSSEAGDEPHLSDDFQFYRLDSIRPTEIKMNE 738 (912)
Q Consensus 659 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 738 (912)
T Consensus 162 -------------------------------------------------------------------------------- 161 (304)
T cd02661 162 -------------------------------------------------------------------------------- 161 (304)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcCCCCCCeEEEEecChhhHhhhhhhhhhhhhhccccccccCCCCCccCHHHHHHHhhCcccCCCCCCCCCCCccccc
Q 002523 739 PLSISDFAKPLTIHVQWAEKMIEKYDTCLLSSLMEVCKPQLFTRMPPESVSLYKCLEAFLKEEPLGPEDMWYCPRCKKHW 818 (912)
Q Consensus 739 ~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~isL~dCL~~F~~~E~L~~~d~wyC~~Ck~~~ 818 (912)
.+|++||+.|+.+|.+++++.|+|++|++.+
T Consensus 162 -------------------------------------------------~~l~~~l~~~~~~e~~~~~~~~~C~~C~~~~ 192 (304)
T cd02661 162 -------------------------------------------------DSLEDALEQFTKPEQLDGENKYKCERCKKKV 192 (304)
T ss_pred -------------------------------------------------CcHHHHHHHhcCceeeCCCCCeeCCCCCCcc
Confidence 1688999999999999999999999999999
Q ss_pred ceEEEEEeecCCceeEEEEeeeEEcCceecccceEEecCCCCCCCCcccccCCCCCCccEEEEEEEEeee-cCCCceEEE
Q 002523 819 QASKKLDLWRSPDILVIHLKRFSFSRYFKSKLDTYVDFPIDDLDLSNYVCCKNSQLSNRYVLYAISNHYG-GMGGGHYTA 897 (912)
Q Consensus 819 ~AtKk~~l~~lP~iLiIHLKRF~~~~~~~~Ki~~~V~FPi~~LDls~~v~~~~~~~~~~YdL~AVinH~G-~l~gGHYtA 897 (912)
.|+|+..|.++|++|+|||+||.+. ...|+.+.|.|| +.|||.+|+..... +...|+|+|||+|+| ++++|||+|
T Consensus 193 ~~~~~~~i~~~P~iL~i~l~Rf~~~--~~~Ki~~~v~f~-~~L~l~~~~~~~~~-~~~~Y~L~~vi~H~G~~~~~GHY~~ 268 (304)
T cd02661 193 KASKQLTIHRAPNVLTIHLKRFSNF--RGGKINKQISFP-ETLDLSPYMSQPND-GPLKYKLYAVLVHSGFSPHSGHYYC 268 (304)
T ss_pred ceEEEEEEecCCcEEEEEEeccccC--CccccCCeEecC-CeechhhccccCCC-CCceeeEEEEEEECCCCCCCcCCEE
Confidence 9999999999999999999999988 568999999999 59999999986443 678999999999999 569999999
Q ss_pred EEEe--CCeEEEE
Q 002523 898 FVDV--SCVYSFH 908 (912)
Q Consensus 898 y~k~--~~~~~f~ 908 (912)
|+|. +.||.||
T Consensus 269 ~~~~~~~~W~~~n 281 (304)
T cd02661 269 YVKSSNGKWYNMD 281 (304)
T ss_pred EEECCCCCEEEEe
Confidence 9997 4588876
No 16
>cd02659 peptidase_C19C A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=7.4e-48 Score=431.78 Aligned_cols=270 Identities=27% Similarity=0.439 Sum_probs=227.0
Q ss_pred cccccccCCCcchHHHHHHHHhCChHHHHHHHhhcccccccCCCCCCchHHHHHHHHHHHHhcCCCCCccChHHHHHHHh
Q 002523 338 GLTGLRNLGNTCFMNSAIQCLAHTPEIVDYFLGDYQKEINYENPLGLNGELALAFGDLLRKLWAPGGIPVAPRMFKLKLA 417 (912)
Q Consensus 338 g~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~ll~~~~~~~~~~n~l~~~~~l~~~l~~L~~~l~~~~~~~i~P~~~~~~l~ 417 (912)
|++||.|+||||||||+||||+++|+|+++++..... . ......++..+|+.|+..|..+....+.|..+.....
T Consensus 1 g~~GL~N~GntCY~NsvLQ~L~~~~~f~~~~l~~~~~--~---~~~~~~~~~~~l~~lf~~~~~~~~~~~~~~~~~~~~~ 75 (334)
T cd02659 1 GYVGLKNQGATCYMNSLLQQLYMTPEFRNAVYSIPPT--E---DDDDNKSVPLALQRLFLFLQLSESPVKTTELTDKTRS 75 (334)
T ss_pred CCCCcccCCcchHHHHHHHHHhcCHHHHHHHHcCCCc--c---cCcccccHHHHHHHHHHHHHhCCccccCcchhheecc
Confidence 7899999999999999999999999999999864111 0 1112356889999999999877666667766542222
Q ss_pred hhCCCCCCCCcCCHHHHHHHHHHHHHHHhhhcccCCccccccCCCCChHHHHHHHHHhhhcCCCccccccccEEEEEEEe
Q 002523 418 NFAPQFSGYNQHDSQEFLAFLLDGLHEDLNRVKCKPYLEAKDAEGQPEEEVAEEYWRNHRARNDSIIVDLCQGQYRSMLV 497 (912)
Q Consensus 418 ~~~~~F~~~~QqDA~EfL~~LLd~L~eel~~~~~k~~~~~~d~~~~~~~~~a~e~w~~~~~~~~SiI~~lF~G~~~s~l~ 497 (912)
...+.|..++||||||||.+||+.|+++++.. ...++|.++|+|.+..+++
T Consensus 76 ~~~~~~~~~~QqDa~Efl~~ll~~l~~~~~~~-----------------------------~~~~~i~~lF~g~~~~~~~ 126 (334)
T cd02659 76 FGWDSLNTFEQHDVQEFFRVLFDKLEEKLKGT-----------------------------GQEGLIKNLFGGKLVNYII 126 (334)
T ss_pred CCCCCCCcccchhHHHHHHHHHHHHHHHhccC-----------------------------cccchhhhhCceEEEeEEE
Confidence 22356888999999999999999999887421 1235689999999999999
Q ss_pred cCCCCCeeeeeecceeEEecCCCCCccceEEEEEcCCCCCCCeeeEEEeCCCCCHHHHHHHHHhhcCCCCCCcEEEEEEe
Q 002523 498 CPVCNKVSVTFDPLMYLSLPIPSTTMRTMTVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALSTKCFLRNHEKLLVAEIY 577 (912)
Q Consensus 498 C~~C~~~s~~~e~F~~LsL~Ip~~~~~~~~v~~~~~d~~~~p~~~~v~v~k~~~~~~l~~~l~~~~~~~~~~~l~~~ei~ 577 (912)
|..|++.+.+.|+|+.|+|++|..
T Consensus 127 C~~C~~~s~~~e~f~~l~l~i~~~-------------------------------------------------------- 150 (334)
T cd02659 127 CKECPHESEREEYFLDLQVAVKGK-------------------------------------------------------- 150 (334)
T ss_pred ecCCCceecccccceEEEEEcCCC--------------------------------------------------------
Confidence 999999999999999999998721
Q ss_pred cceeeeeccCCcccccccCCCCcEEEEEcCCCCCCCceEEEeeecccccccccccccceeeeccceEEEcCCCCChhHHH
Q 002523 578 RSKIFRVLDEPSDLLGLIRDEDKLVAYRLPKDSETPSLVLFMHERKEESCHLGRLSLEWKIFGTPLVGRLSDLTNGSDIR 657 (912)
Q Consensus 578 ~~~i~~~~~~~~~~~~~i~~~d~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~v~~~~~~~~l~ 657 (912)
T Consensus 151 -------------------------------------------------------------------------------- 150 (334)
T cd02659 151 -------------------------------------------------------------------------------- 150 (334)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhcCCccCCCCCCCCcccccCCCCCCCcccccccccccCCCCCCCCCCCCCCCCCCCCceeEEEecCCCCcccccC
Q 002523 658 KLFLKLLDPFLMPVGDDSDFSDEAGKIDNGDSIVEDVTSSRVSDNDAVSDSSEAGDEPHLSDDFQFYRLDSIRPTEIKMN 737 (912)
Q Consensus 658 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 737 (912)
T Consensus 151 -------------------------------------------------------------------------------- 150 (334)
T cd02659 151 -------------------------------------------------------------------------------- 150 (334)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcCCCCCCeEEEEecChhhHhhhhhhhhhhhhhccccccccCCCCCccCHHHHHHHhhCcccCCCCCCCCCCCcccc
Q 002523 738 EPLSISDFAKPLTIHVQWAEKMIEKYDTCLLSSLMEVCKPQLFTRMPPESVSLYKCLEAFLKEEPLGPEDMWYCPRCKKH 817 (912)
Q Consensus 738 ~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~isL~dCL~~F~~~E~L~~~d~wyC~~Ck~~ 817 (912)
.+|++||+.|+.+|.+.++|.|+|++|++.
T Consensus 151 --------------------------------------------------~~l~~~l~~~~~~e~l~~~~~~~C~~C~~~ 180 (334)
T cd02659 151 --------------------------------------------------KNLEESLDAYVQGETLEGDNKYFCEKCGKK 180 (334)
T ss_pred --------------------------------------------------CCHHHHHHHhcCeeEecCCccEecCcCCCc
Confidence 168899999999999999999999999999
Q ss_pred cceEEEEEeecCCceeEEEEeeeEEcC--ceecccceEEecCCCCCCCCcccccCC----------CCCCccEEEEEEEE
Q 002523 818 WQASKKLDLWRSPDILVIHLKRFSFSR--YFKSKLDTYVDFPIDDLDLSNYVCCKN----------SQLSNRYVLYAISN 885 (912)
Q Consensus 818 ~~AtKk~~l~~lP~iLiIHLKRF~~~~--~~~~Ki~~~V~FPi~~LDls~~v~~~~----------~~~~~~YdL~AVin 885 (912)
+.|.|+..|.++|+||+|||+||.|+. ..+.|+++.|.|| ..|||++|+.... ......|+|+|||+
T Consensus 181 ~~~~k~~~i~~lP~vLii~l~Rf~~~~~~~~~~K~~~~v~fp-~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~Y~L~~vI~ 259 (334)
T cd02659 181 VDAEKGVCFKKLPPVLTLQLKRFEFDFETMMRIKINDRFEFP-LELDMEPYTEKGLAKKEGDSEKKDSESYIYELHGVLV 259 (334)
T ss_pred ccEEEEEEeecCCCEEEEEeeeeEEccccCcceeCCceEeCC-ceecCccccccccccccccccccCCCCeeEEEEEEEE
Confidence 999999999999999999999999973 4578999999999 5899999987542 23567899999999
Q ss_pred eeecCCCceEEEEEEe---CCeEEEE
Q 002523 886 HYGGMGGGHYTAFVDV---SCVYSFH 908 (912)
Q Consensus 886 H~G~l~gGHYtAy~k~---~~~~~f~ 908 (912)
|.|++.+|||+||+|. +.||.||
T Consensus 260 H~G~~~~GHY~~~vk~~~~~~W~~~n 285 (334)
T cd02659 260 HSGDAHGGHYYSYIKDRDDGKWYKFN 285 (334)
T ss_pred ecCCCCCCCeEEEEECCCCCceEEEe
Confidence 9999999999999997 4588887
No 17
>cd02662 Peptidase_C19F A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=7e-43 Score=373.08 Aligned_cols=91 Identities=35% Similarity=0.594 Sum_probs=82.9
Q ss_pred cCHHHHHHHhhCcccCCCCCCCCCCCcccccceEEEEEeecCCceeEEEEeeeEEcC-ceecccceEEecCCCCCCCCcc
Q 002523 788 VSLYKCLEAFLKEEPLGPEDMWYCPRCKKHWQASKKLDLWRSPDILVIHLKRFSFSR-YFKSKLDTYVDFPIDDLDLSNY 866 (912)
Q Consensus 788 isL~dCL~~F~~~E~L~~~d~wyC~~Ck~~~~AtKk~~l~~lP~iLiIHLKRF~~~~-~~~~Ki~~~V~FPi~~LDls~~ 866 (912)
.+|++||+.|+.+|.+++ |.|++| +..|.++|+|||||||||.|+. +...|+++.|.||. .|
T Consensus 96 ~sl~~~L~~~~~~E~l~~---~~C~~C--------~~~i~~lP~vLii~LkRF~~~~~~~~~K~~~~v~fp~-~l----- 158 (240)
T cd02662 96 TTLEHCLDDFLSTEIIDD---YKCDRC--------QTVIVRLPQILCIHLSRSVFDGRGTSTKNSCKVSFPE-RL----- 158 (240)
T ss_pred CCHHHHHHHhcCcccccC---cCCCCC--------eEEeecCCcEEEEEEEEEEEcCCCceeeeccEEECCC-cc-----
Confidence 489999999999999965 899999 6789999999999999999987 67889999999994 66
Q ss_pred cccCCCCCCccEEEEEEEEeeecCCCceEEEEEEeC
Q 002523 867 VCCKNSQLSNRYVLYAISNHYGGMGGGHYTAFVDVS 902 (912)
Q Consensus 867 v~~~~~~~~~~YdL~AVinH~G~l~gGHYtAy~k~~ 902 (912)
....|+|+|||+|.|+.++|||+||+|.+
T Consensus 159 -------~~~~Y~L~avi~H~G~~~~GHY~~~~k~~ 187 (240)
T cd02662 159 -------PKVLYRLRAVVVHYGSHSSGHYVCYRRKP 187 (240)
T ss_pred -------CCceEEEEEEEEEeccCCCceEEEEEeCC
Confidence 34689999999999988999999999984
No 18
>cd02674 Peptidase_C19R A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=8.1e-41 Score=354.69 Aligned_cols=121 Identities=50% Similarity=0.869 Sum_probs=111.6
Q ss_pred cCHHHHHHHhhCcccCCCCCCCCCCCcccccceEEEEEeecCCceeEEEEeeeEEcCceecccceEEecCCCCCCCCccc
Q 002523 788 VSLYKCLEAFLKEEPLGPEDMWYCPRCKKHWQASKKLDLWRSPDILVIHLKRFSFSRYFKSKLDTYVDFPIDDLDLSNYV 867 (912)
Q Consensus 788 isL~dCL~~F~~~E~L~~~d~wyC~~Ck~~~~AtKk~~l~~lP~iLiIHLKRF~~~~~~~~Ki~~~V~FPi~~LDls~~v 867 (912)
.+|++||+.|+.+|.+++.+.|.|++|++++.+.++..|.++|+||+|||+||.++.....|+++.|.||.+.|||++|+
T Consensus 84 ~sl~~~L~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~lP~iLii~l~R~~~~~~~~~K~~~~v~~~~~~l~l~~~~ 163 (230)
T cd02674 84 VTLEDCLRLFTKEETLDGDNAWKCPKCKKKRKATKKLTISRLPKVLIIHLKRFSFSRGSTRKLTTPVTFPLNDLDLTPYV 163 (230)
T ss_pred CCHHHHHHHhcCccccCCCCceeCCCCCCccceEEEEEEecCChhhEeEhhheecCCCCcccCCceEecccccccccccc
Confidence 48999999999999999999999999999999999999999999999999999999888899999999998789999997
Q ss_pred ccCCCCCCccEEEEEEEEeeecCCCceEEEEEEeC---CeEEEE
Q 002523 868 CCKNSQLSNRYVLYAISNHYGGMGGGHYTAFVDVS---CVYSFH 908 (912)
Q Consensus 868 ~~~~~~~~~~YdL~AVinH~G~l~gGHYtAy~k~~---~~~~f~ 908 (912)
..........|+|+|||.|.|..++|||+||+|.+ .||.||
T Consensus 164 ~~~~~~~~~~Y~L~~vI~H~G~~~~GHY~~~~~~~~~~~W~~fn 207 (230)
T cd02674 164 DTRSFTGPFKYDLYAVVNHYGSLNGGHYTAYCKNNETNDWYKFD 207 (230)
T ss_pred CcccCCCCceEEEEEEEEeeCCCCCcEEEEEEECCCCCceEEEc
Confidence 55544577899999999999977999999999985 388886
No 19
>KOG1873 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.7e-40 Score=373.15 Aligned_cols=155 Identities=35% Similarity=0.571 Sum_probs=117.5
Q ss_pred cccccccccccCCCcchHHHHHHHHhCChHHHHHHHhhcccc----cc--cCC-------CCCCchHHHHHHHHHHHHhc
Q 002523 334 VCLLGLTGLRNLGNTCFMNSAIQCLAHTPEIVDYFLGDYQKE----IN--YEN-------PLGLNGELALAFGDLLRKLW 400 (912)
Q Consensus 334 ~~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~ll~~~~~~----~~--~~n-------~l~~~~~l~~~l~~L~~~l~ 400 (912)
.......||.|||||||+|||+|+|+.+|.|++.|....... +. ... .+...+.+..+|.. +..|.
T Consensus 200 ~~~~~VrGL~NLGNTCFFNavMQnL~qt~~L~d~l~e~~~Sgt~v~I~~~~~s~l~~L~~el~~~g~lt~al~~-~~e~~ 278 (877)
T KOG1873|consen 200 RRGYIVRGLTNLGNTCFFNAVMQNLAQTPALRDVLKEEKESGTSVKIRPPLDSSLSPLFSELSSPGPLTYALAN-LLEMS 278 (877)
T ss_pred cccccccccccccchhhHHHHHHHHhhcHHHHHHHHhhccCCceeEecCccccchhhHHHhccCCcchhHHHHh-hhhhh
Confidence 345678999999999999999999999999999887532111 10 000 12345677888887 55566
Q ss_pred CCCCCccChHHHHHHHhhhCCCCCCCCcCCHHHHHHHHHHHHH-HHhhhcccCCccccccCCCCChHHHHHHHHHhhhcC
Q 002523 401 APGGIPVAPRMFKLKLANFAPQFSGYNQHDSQEFLAFLLDGLH-EDLNRVKCKPYLEAKDAEGQPEEEVAEEYWRNHRAR 479 (912)
Q Consensus 401 ~~~~~~i~P~~~~~~l~~~~~~F~~~~QqDA~EfL~~LLd~L~-eel~~~~~k~~~~~~d~~~~~~~~~a~e~w~~~~~~ 479 (912)
.+....++|+.|+..+...+|+|.||+||||||+|++|||.|. ||..+.++.
T Consensus 279 e~~ksv~~Pr~lF~~~C~k~pqF~g~~QhDsHELLR~LLD~l~~EE~~~~kk~--------------------------- 331 (877)
T KOG1873|consen 279 ETTKSVITPRTLFGQFCSKAPQFRGYDQHDSHELLRCLLDSLRSEESRRRKKN--------------------------- 331 (877)
T ss_pred hccCCccCHHHHHHHHHHhCCcccccccccHHHHHHHHHHhhhHHHHHHHHHh---------------------------
Confidence 7788999999999999999999999999999999999999997 444333321
Q ss_pred CCccccccccEEEEEEEecCCCCCeeeeeecceeEEecCCC
Q 002523 480 NDSIIVDLCQGQYRSMLVCPVCNKVSVTFDPLMYLSLPIPS 520 (912)
Q Consensus 480 ~~SiI~~lF~G~~~s~l~C~~C~~~s~~~e~F~~LsL~Ip~ 520 (912)
|...|+|...+...|.+|++.+..+++|..++|++|.
T Consensus 332 ----Il~~fG~~t~~l~scle~~q~sKvYe~f~~~~~~vp~ 368 (877)
T KOG1873|consen 332 ----ILSNFGGETSSLVSCLECGQKSKVYEPFKDLSLPVPL 368 (877)
T ss_pred ----HHHhhCccccchhhhhhccchhhcccccccCCccccc
Confidence 5566777777777777777777777777777777763
No 20
>KOG1867 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.1e-39 Score=370.53 Aligned_cols=297 Identities=31% Similarity=0.561 Sum_probs=244.6
Q ss_pred ccccccccccccCCCcchHHHHHHHHhCChHHHHHHHhhcccccccCCCCCC-chHHHHHHHHHHHHhcCCC-CCccChH
Q 002523 333 GVCLLGLTGLRNLGNTCFMNSAIQCLAHTPEIVDYFLGDYQKEINYENPLGL-NGELALAFGDLLRKLWAPG-GIPVAPR 410 (912)
Q Consensus 333 ~~~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~ll~~~~~~~~~~n~l~~-~~~l~~~l~~L~~~l~~~~-~~~i~P~ 410 (912)
....-++.||.|+|||||||++||+|.|.+..+...+...+. ..+... ..++.+++..++..+|++. ..+++|.
T Consensus 155 ~~~~~~l~g~~n~g~tcfmn~ilqsl~~~~~~~~~~l~~~h~----~~~~~~~~~~l~~~~~~~~~~~~s~~~~~~~sp~ 230 (492)
T KOG1867|consen 155 STTALGLRGLRNLGSTCFMNVILQSLLHDPLSRSSFLSGIHS----KEPSSSGSSCLVCDLDRLFQALYSGHNRTPYSPF 230 (492)
T ss_pred ceeeecccccccccHHHHHHHHHHHhhccchhhccchhhhcc----cCCCCCCCcchhhhhhhhhhHhhcCCCCCCcChH
Confidence 345679999999999999999999999999999988866554 112222 4678999999999999998 8999999
Q ss_pred HHHHHHhhhCCCCCCCCcCCHHHHHHHHHHHHHHHhhhcccCCccccccCCCCChHHHHHHHHHhhhcCCCccccccccE
Q 002523 411 MFKLKLANFAPQFSGYNQHDSQEFLAFLLDGLHEDLNRVKCKPYLEAKDAEGQPEEEVAEEYWRNHRARNDSIIVDLCQG 490 (912)
Q Consensus 411 ~~~~~l~~~~~~F~~~~QqDA~EfL~~LLd~L~eel~~~~~k~~~~~~d~~~~~~~~~a~e~w~~~~~~~~SiI~~lF~G 490 (912)
.+...+++..|.|.+|+|||||||+..+++.+|.+.+...+.. ..... . ..-.+++...|.|
T Consensus 231 ~~l~~~~k~~~~~~g~~Qqda~eF~~~~~~~~~~~~~~~~k~~---~~~~~------------~---~~c~~iv~~~F~G 292 (492)
T KOG1867|consen 231 ELLNLVWKHSPNLAGYEQQDAHEFLIALLDRLHREKDDCGKSL---IASQS------------N---KQCPCIVHTIFSG 292 (492)
T ss_pred HHHHHHHHhCcccccccccchHHHHHHhccccccccccccccc---ccccC------------C---cccccccceeecc
Confidence 9999999999999999999999999999999998761111110 00000 0 0236789999999
Q ss_pred EEEEEEecCCCCCeeeeeecceeEEecCCCCCccceEEEEEcCCCCCCCeeeEEEeCCCCCHHHHHHHHHhhcCCCCCCc
Q 002523 491 QYRSMLVCPVCNKVSVTFDPLMYLSLPIPSTTMRTMTVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALSTKCFLRNHEK 570 (912)
Q Consensus 491 ~~~s~l~C~~C~~~s~~~e~F~~LsL~Ip~~~~~~~~v~~~~~d~~~~p~~~~v~v~k~~~~~~l~~~l~~~~~~~~~~~ 570 (912)
++.+.++|..|+..|.+++||++|+|+||....-.
T Consensus 293 ~L~~~v~c~~c~~~S~~~dpf~disL~i~~~~~~~--------------------------------------------- 327 (492)
T KOG1867|consen 293 TLQSDVTCQTCGSKSTTYDPFMDISLDIPDQFTSS--------------------------------------------- 327 (492)
T ss_pred eeccceeehhhcceeeeccCccceeeecchhccCc---------------------------------------------
Confidence 99999999999999999999999999999532000
Q ss_pred EEEEEEecceeeeeccCCcccccccCCCCcEEEEEcCCCCCCCceEEEeeecccccccccccccceeeeccceEEEcCCC
Q 002523 571 LLVAEIYRSKIFRVLDEPSDLLGLIRDEDKLVAYRLPKDSETPSLVLFMHERKEESCHLGRLSLEWKIFGTPLVGRLSDL 650 (912)
Q Consensus 571 l~~~ei~~~~i~~~~~~~~~~~~~i~~~d~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~v~~~ 650 (912)
T Consensus 328 -------------------------------------------------------------------------------- 327 (492)
T KOG1867|consen 328 -------------------------------------------------------------------------------- 327 (492)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CChhHHHHHHHHhcCCccCCCCCCCCcccccCCCCCCCcccccccccccCCCCCCCCCCCCCCCCCCCCceeEEEecCCC
Q 002523 651 TNGSDIRKLFLKLLDPFLMPVGDDSDFSDEAGKIDNGDSIVEDVTSSRVSDNDAVSDSSEAGDEPHLSDDFQFYRLDSIR 730 (912)
Q Consensus 651 ~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 730 (912)
... .
T Consensus 328 ------------------------------------------------------~~~--------------------~-- 331 (492)
T KOG1867|consen 328 ------------------------------------------------------SVR--------------------S-- 331 (492)
T ss_pred ------------------------------------------------------ccc--------------------c--
Confidence 000 0
Q ss_pred CcccccCCCCCcCCCCCCeEEEEecChhhHhhhhhhhhhhhhhccccccccCCCCCccCHHHHHHHhhCcccCCCCCCCC
Q 002523 731 PTEIKMNEPLSISDFAKPLTIHVQWAEKMIEKYDTCLLSSLMEVCKPQLFTRMPPESVSLYKCLEAFLKEEPLGPEDMWY 810 (912)
Q Consensus 731 ~~~~~~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~isL~dCL~~F~~~E~L~~~d~wy 810 (912)
...++.+|++.|+.-|.++......
T Consensus 332 -------------------------------------------------------~~~~~~~cl~~~~~~~~~~~~~~~~ 356 (492)
T KOG1867|consen 332 -------------------------------------------------------PELTLLDCLDRFTRSEQLGKDSKYK 356 (492)
T ss_pred -------------------------------------------------------chhhhhhhhhhhhhhhhcCcccccc
Confidence 0137899999999999999999999
Q ss_pred CCCcccccceEEEEEeecCCceeEEEEeeeEEcCceec-ccceEEecCCCCCCCCcccccC---CC-CCCccEEEEEEEE
Q 002523 811 CPRCKKHWQASKKLDLWRSPDILVIHLKRFSFSRYFKS-KLDTYVDFPIDDLDLSNYVCCK---NS-QLSNRYVLYAISN 885 (912)
Q Consensus 811 C~~Ck~~~~AtKk~~l~~lP~iLiIHLKRF~~~~~~~~-Ki~~~V~FPi~~LDls~~v~~~---~~-~~~~~YdL~AVin 885 (912)
|..|+..+.++|++.+-++|.+|.+|||||.+...... |++++|.|| ..|+|.+|+..+ .. ..+..|+|+|||+
T Consensus 357 c~~c~~~~~~~kql~~~~lP~~l~~~lkRfe~~~~~~~~ki~~~v~fp-~~l~m~p~~~~~~~~~~~~~~~~Y~L~AVV~ 435 (492)
T KOG1867|consen 357 CSSCKSKQESTKQLTIRKLPAVLCLHLKRFEHSATGAREKIDSYVSFP-VLLNMKPYCSSEKLKSQDNPDHLYELRAVVV 435 (492)
T ss_pred cCCcccccccccccccccCCceeeeeeccccccccccccccCcccccc-hhhcCCccccccccccCCCCCceEEEEEEEE
Confidence 99999999999999999999999999999999854433 999999999 699999999852 11 2468999999999
Q ss_pred eeecCCCceEEEEEEeCC-eEEEE
Q 002523 886 HYGGMGGGHYTAFVDVSC-VYSFH 908 (912)
Q Consensus 886 H~G~l~gGHYtAy~k~~~-~~~f~ 908 (912)
|+|++++||||||+|+.+ ||++|
T Consensus 436 H~G~~~SGHY~aY~r~~~~~~~~d 459 (492)
T KOG1867|consen 436 HHGTVGSGHYVAYRRQSGGWFKCD 459 (492)
T ss_pred eccCCCCCceEEEEEeCCCcEEEc
Confidence 999999999999999965 66554
No 21
>KOG0944 consensus Ubiquitin-specific protease UBP14 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.2e-39 Score=358.84 Aligned_cols=154 Identities=29% Similarity=0.492 Sum_probs=129.4
Q ss_pred ccccccccccccCCCcchHHHHHHHHhCChHHHHHHHhhcccccccCCCCCCchHHHHHHHHHHHHhcCCC---------
Q 002523 333 GVCLLGLTGLRNLGNTCFMNSAIQCLAHTPEIVDYFLGDYQKEINYENPLGLNGELALAFGDLLRKLWAPG--------- 403 (912)
Q Consensus 333 ~~~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~ll~~~~~~~~~~n~l~~~~~l~~~l~~L~~~l~~~~--------- 403 (912)
+...+|.+||.|+||+||||||+|+|+++|.|...++.. ..+-...+.....++.+++.+|...|.++.
T Consensus 301 p~~gpgytGl~NlGNSCYlnSVmQ~Lf~i~~fq~~~~~~--~~~f~~~~~~P~ndf~cQ~~Kl~~gm~sgkys~p~~~~~ 378 (763)
T KOG0944|consen 301 PLFGPGYTGLINLGNSCYLNSVMQSLFSIPSFQRRYLEQ--ERIFNCYPKDPTNDFNCQLAKLLHGMLSGKYSKPLMDPS 378 (763)
T ss_pred cccCCCccceeecCcchhHHHHHHHheecccHHHhhccc--cceeecCCCCcchhHHHHHHHHHHHhhcCcccCccCCcc
Confidence 355789999999999999999999999999999988754 111112233445789999999999997653
Q ss_pred -CCccChHHHHHHHhhhCCCCCCCCcCCHHHHHHHHHHHHHHHhhhcccCCccccccCCCCChHHHHHHHHHhhhcCCC-
Q 002523 404 -GIPVAPRMFKLKLANFAPQFSGYNQHDSQEFLAFLLDGLHEDLNRVKCKPYLEAKDAEGQPEEEVAEEYWRNHRARND- 481 (912)
Q Consensus 404 -~~~i~P~~~~~~l~~~~~~F~~~~QqDA~EfL~~LLd~L~eel~~~~~k~~~~~~d~~~~~~~~~a~e~w~~~~~~~~- 481 (912)
...|+|..|+..+++-+|.|+..+||||||||.+||+.|.+... ..
T Consensus 379 ~qngIsP~mFK~~igknHpeFst~~QQDA~EFllfLl~ki~~n~r--------------------------------s~~ 426 (763)
T KOG0944|consen 379 NQNGISPLMFKALIGKNHPEFSTNRQQDAQEFLLFLLEKIRENSR--------------------------------SSL 426 (763)
T ss_pred ccCCcCHHHHHHHHcCCCccccchhhhhHHHHHHHHHHHHhhccc--------------------------------ccC
Confidence 23689999999999999999999999999999999999986321 11
Q ss_pred ccccccccEEEEEEEecCCCCCeeeeeecceeEEecCCC
Q 002523 482 SIIVDLCQGQYRSMLVCPVCNKVSVTFDPLMYLSLPIPS 520 (912)
Q Consensus 482 SiI~~lF~G~~~s~l~C~~C~~~s~~~e~F~~LsL~Ip~ 520 (912)
..+.++|...+..++.|..|++++.++++-+.+.||||.
T Consensus 427 ~nptd~frF~ve~Rv~C~~c~kVrYs~~~~~~i~lpv~~ 465 (763)
T KOG0944|consen 427 PNPTDLFRFEVEDRVSCLGCRKVRYSYESEYLIQLPVPM 465 (763)
T ss_pred CCHHHHHHhhhhhhhhhhccccccccchhheeeEeeccc
Confidence 238899999999999999999999999999999999984
No 22
>cd02666 Peptidase_C19J A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=3.5e-38 Score=350.66 Aligned_cols=159 Identities=21% Similarity=0.269 Sum_probs=122.6
Q ss_pred ccccccCCCcchHHHHHHHHhCChHHHHHHHhhcc--cc----cccCCCC----------CCchHHHHHHHHHHHHhcCC
Q 002523 339 LTGLRNLGNTCFMNSAIQCLAHTPEIVDYFLGDYQ--KE----INYENPL----------GLNGELALAFGDLLRKLWAP 402 (912)
Q Consensus 339 ~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~ll~~~~--~~----~~~~n~l----------~~~~~l~~~l~~L~~~l~~~ 402 (912)
|+||.|+||||||||+||||+++|+||++++..-. .+ ....... ....+++.+|+.||..|+.+
T Consensus 1 PvGL~NlGNTCYmNSlLQ~L~~i~~lR~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LF~~l~~s 80 (343)
T cd02666 1 PAGLDNIGNTCYLNSLLQYFFTIKPLRDLVLNFDESKAELASDYPTERRIGGREVSRSELQRSNQFVYELRSLFNDLIHS 80 (343)
T ss_pred CCCcccCCceeHHHHHHHHHHccHHHHHHHHcCCccccccccccccccccCccccchhhhhhHHHHHHHHHHHHHHHHhC
Confidence 68999999999999999999999999999985310 00 0000000 11236899999999999998
Q ss_pred CCCccChHHHHHHHhhhCCCCCCCCcCCHHHHHHHHHHHHHHHhhhcccCCccccccCCCCChHHHHHHHHHhhhcCCCc
Q 002523 403 GGIPVAPRMFKLKLANFAPQFSGYNQHDSQEFLAFLLDGLHEDLNRVKCKPYLEAKDAEGQPEEEVAEEYWRNHRARNDS 482 (912)
Q Consensus 403 ~~~~i~P~~~~~~l~~~~~~F~~~~QqDA~EfL~~LLd~L~eel~~~~~k~~~~~~d~~~~~~~~~a~e~w~~~~~~~~S 482 (912)
...++.|..++..+.. .|||||||+..||+.||++++.....+.. ++. .......+
T Consensus 81 ~~~~v~P~~~l~~l~~--------~QQDa~Ef~~~lld~Le~~lk~~~~~~~~--------~~~--------~~~~~~~~ 136 (343)
T cd02666 81 NTRSVTPSKELAYLAL--------RQQDVTECIDNVLFQLEVALEPISNAFAG--------PDT--------EDDKEQSD 136 (343)
T ss_pred CCCccCcHHHHHhccc--------cccchHHHHHHHHHHHHHHhcCccccccC--------ccc--------ccccchhh
Confidence 8899999999876642 89999999999999999998754321110 000 00112457
Q ss_pred cccccccEEEEEEEecCCCC---CeeeeeecceeEEecCCCC
Q 002523 483 IIVDLCQGQYRSMLVCPVCN---KVSVTFDPLMYLSLPIPST 521 (912)
Q Consensus 483 iI~~lF~G~~~s~l~C~~C~---~~s~~~e~F~~LsL~Ip~~ 521 (912)
+|.++|.|+++++++|..|+ ..+.+.|+|+.|+|+|+..
T Consensus 137 ~I~~lF~G~~~~~i~c~~~~~~~~~s~~~E~F~~L~l~I~~~ 178 (343)
T cd02666 137 LIKRLFSGKTKQQLVPESMGNQPSVRTKTERFLSLLVDVGKK 178 (343)
T ss_pred hhhHhceeeEEEEEEecccCCCCCCccccceeEEEEEecCcc
Confidence 89999999999999999997 7899999999999999853
No 23
>cd02665 Peptidase_C19I A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.9e-37 Score=324.39 Aligned_cols=101 Identities=24% Similarity=0.305 Sum_probs=87.2
Q ss_pred CHHHHHHHhhCcccCCCCCCCCCCCcccccceEEEEEeecCCceeEEEEeeeEEcCceecccceEEecCCCCCCCCcccc
Q 002523 789 SLYKCLEAFLKEEPLGPEDMWYCPRCKKHWQASKKLDLWRSPDILVIHLKRFSFSRYFKSKLDTYVDFPIDDLDLSNYVC 868 (912)
Q Consensus 789 sL~dCL~~F~~~E~L~~~d~wyC~~Ck~~~~AtKk~~l~~lP~iLiIHLKRF~~~~~~~~Ki~~~V~FPi~~LDls~~v~ 868 (912)
+|++||+.|+.+|.+++++.++ .++++|+..|+++|+|||||||||.|+...+.||.+.|+||. .|
T Consensus 94 ~L~e~L~~~~~ee~l~~~~~~~------~~~~~~~~~i~~lP~vL~i~LkRF~~~~~~~~Ki~~~v~FP~-~l------- 159 (228)
T cd02665 94 NLHECLEAAMFEGEVELLPSDH------SVKSGQERWFTELPPVLTFELSRFEFNQGRPEKIHDKLEFPQ-II------- 159 (228)
T ss_pred CHHHHHHHhhhhcccccccccc------hhhhhhhhhhhhCChhhEEEeEeeEEcCCccEECCEEEEeeC-cc-------
Confidence 7999999999999998765433 346778888999999999999999998877899999999995 55
Q ss_pred cCCCCCCccEEEEEEEEeeecCCCceEEEEEEe---CCeEEEE
Q 002523 869 CKNSQLSNRYVLYAISNHYGGMGGGHYTAFVDV---SCVYSFH 908 (912)
Q Consensus 869 ~~~~~~~~~YdL~AVinH~G~l~gGHYtAy~k~---~~~~~f~ 908 (912)
....|+|+||++|.|++++|||+||+|+ +.||.||
T Consensus 160 -----~~~~Y~L~aVi~H~G~~~~GHY~~~i~~~~~~~W~~fd 197 (228)
T cd02665 160 -----QQVPYELHAVLVHEGQANAGHYWAYIYKQSRQEWEKYN 197 (228)
T ss_pred -----CCceeEEEEEEEecCCCCCCEEEEEEEcCCCCEEEEEE
Confidence 2357999999999999999999999985 4588886
No 24
>cd02673 Peptidase_C19Q A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=6e-37 Score=326.49 Aligned_cols=104 Identities=23% Similarity=0.339 Sum_probs=84.0
Q ss_pred CHHHHHHHhhCcccCCCCCCCCCCCcccccceEEEEEeecCCceeEEEEeeeEEcCceecccceEEecCCCCCCCCcccc
Q 002523 789 SLYKCLEAFLKEEPLGPEDMWYCPRCKKHWQASKKLDLWRSPDILVIHLKRFSFSRYFKSKLDTYVDFPIDDLDLSNYVC 868 (912)
Q Consensus 789 sL~dCL~~F~~~E~L~~~d~wyC~~Ck~~~~AtKk~~l~~lP~iLiIHLKRF~~~~~~~~Ki~~~V~FPi~~LDls~~v~ 868 (912)
+|++|++.|.++|.++ |.|++|+.. .|+|+..|+++|+||+||||||.+.. ++...+.. ..++|.+|+.
T Consensus 111 ~le~l~~~~~~~~~~e----~~C~~C~~~-~a~k~~~i~~~P~vL~i~lkRf~~~~----~~~~~~~~--~~~~~~~~~~ 179 (245)
T cd02673 111 IDELLISNFKTWSPIE----KDCSSCKCE-SAISSERIMTFPECLSINLKRYKLRI----ATSDYLKK--NEEIMKKYCG 179 (245)
T ss_pred hHHHHHHHhhcccccC----ccCCCCCCc-cceeechhhhCChhhEEeeEeeeecc----cccccccc--cccccccccC
Confidence 4778888888877763 799999875 89999999999999999999998653 33333333 3577888875
Q ss_pred cCCCCCCccEEEEEEEEeee-cCCCceEEEEEEe----CCeEEEE
Q 002523 869 CKNSQLSNRYVLYAISNHYG-GMGGGHYTAFVDV----SCVYSFH 908 (912)
Q Consensus 869 ~~~~~~~~~YdL~AVinH~G-~l~gGHYtAy~k~----~~~~~f~ 908 (912)
.+..|+|+|||+|.| ++++||||||+|. +.||.||
T Consensus 180 -----~~~~Y~L~~VV~H~G~~~~~GHY~a~vk~~~~~~~Wy~fn 219 (245)
T cd02673 180 -----TDAKYSLVAVICHLGESPYDGHYIAYTKELYNGSSWLYCS 219 (245)
T ss_pred -----CCceEEEEEEEEECCCCCCCceEEEEEEcCCCCCeEEEee
Confidence 346799999999999 5999999999997 3488887
No 25
>PF00443 UCH: Ubiquitin carboxyl-terminal hydrolase; InterPro: IPR001394 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C19 (ubiquitin-specific protease family, clan CA). Families within the CA clan are loosely termed papain-like as protein fold of the peptidase unit resembles that of papain, the type example for clan CA. Predicted active site residues for members of this family and family C1 occur in the same order in the sequence: N/Q, C, H. The type example is human ubiquitin-specific protease 14. Ubiquitin is highly conserved, commonly found conjugated to proteins in eukaryotic cells, where it may act as a marker for rapid degradation, or it may have a chaperone function in protein assembly []. The ubiquitin is released by cleavage from the bound protein by a protease []. A number of deubiquitinising proteases are known: all are activated by thiol compounds [, ], and inhibited by thiol-blocking agents and ubiquitin aldehyde [, ], and as such have the properties of cysteine proteases []. The deubiquitinsing proteases can be split into 2 size ranges (20-30 kDa, IPR001578 from INTERPRO, and 100-200 kDa) []: this family are the 100-200 kDa peptides which includes the Ubp1 ubiquitin peptidase from yeast. Only one conserved cysteine can be identified, along with two conserved histidines. The spacing between the cysteine and the second histidine is thought to be more representative of the cysteine/histidine spacing of a cysteine protease catalytic dyad [].; GO: 0004221 ubiquitin thiolesterase activity, 0006511 ubiquitin-dependent protein catabolic process; PDB: 2LBC_A 3MHH_A 3MHS_A 3M99_A 2Y6E_D 2VHF_A 2HD5_A 3NHE_A 2IBI_A 1NBF_B ....
Probab=100.00 E-value=1.2e-36 Score=327.36 Aligned_cols=148 Identities=38% Similarity=0.688 Sum_probs=118.5
Q ss_pred ccccccCCCcchHHHHHHHHhCChHHHHHHHhh-cccccccCCCCCCchHHHHHHHHHHHHhcCC--CCCccChHHHHHH
Q 002523 339 LTGLRNLGNTCFMNSAIQCLAHTPEIVDYFLGD-YQKEINYENPLGLNGELALAFGDLLRKLWAP--GGIPVAPRMFKLK 415 (912)
Q Consensus 339 ~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~ll~~-~~~~~~~~n~l~~~~~l~~~l~~L~~~l~~~--~~~~i~P~~~~~~ 415 (912)
++||.|.||||||||+||||+++|+|+++++.. +....+..++.....++..+|+.|+..|+.. ....+.|..|+.+
T Consensus 1 ~~Gl~N~gntCylNs~lQ~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~i~~~~~~~~ 80 (269)
T PF00443_consen 1 PVGLQNIGNTCYLNSVLQCLFHIPPFRNYLLSYNSEKENNESNPSKKIKEFLQQLQNLFRSLWSSNSSDSSISPSDFINA 80 (269)
T ss_dssp --EESBSSSTHHHHHHHHHHHTSHHHHHHHHTTCHHHHHHCSSTTSCTCHHHHHHHHHHHHHHSSCSSSSEEHCHHHHHH
T ss_pred CCCcEeCCCchHHhHHHHhhhhhhhhhhhhhhcccchhhccccccccccchhhhhhhhhhhhhhhcccccceeecccccc
Confidence 589999999999999999999999999999854 2222344455555678999999999999988 6788999999999
Q ss_pred HhhhCCCCCCCCcCCHHHHHHHHHHHHHHHhhhcccCCccccccCCCCChHHHHHHHHHhhhcCCCccccccccEEEEEE
Q 002523 416 LANFAPQFSGYNQHDSQEFLAFLLDGLHEDLNRVKCKPYLEAKDAEGQPEEEVAEEYWRNHRARNDSIIVDLCQGQYRSM 495 (912)
Q Consensus 416 l~~~~~~F~~~~QqDA~EfL~~LLd~L~eel~~~~~k~~~~~~d~~~~~~~~~a~e~w~~~~~~~~SiI~~lF~G~~~s~ 495 (912)
++...+.|..++||||+|||..||+.|++++..... ...|........+++.++|.|++...
T Consensus 81 l~~~~~~~~~~~qqDa~E~l~~ll~~l~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~f~~~~~~~ 142 (269)
T PF00443_consen 81 LSSINPSFSNGEQQDAHEFLSFLLDWLDEEFNSSFK------------------RKSWKNTNSSEDSLISDLFGGQFESS 142 (269)
T ss_dssp HHHHCGGGGSSSTEEHHHHHHHHHHHHHHHHTSCSS------------------HHHHHHHHCCEESHHHHHH-EEEEEE
T ss_pred ccccccccccccccchhhhhcccccccchhhccccc------------------cccccccccccccccccccccccccc
Confidence 999999999999999999999999999998754321 22345555666778888888888888
Q ss_pred EecCCCCCe
Q 002523 496 LVCPVCNKV 504 (912)
Q Consensus 496 l~C~~C~~~ 504 (912)
++|..|+..
T Consensus 143 ~~c~~c~~~ 151 (269)
T PF00443_consen 143 IKCSSCKNS 151 (269)
T ss_dssp EEETTTTCE
T ss_pred ccccccccc
Confidence 888766543
No 26
>KOG1866 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.1e-38 Score=354.12 Aligned_cols=274 Identities=27% Similarity=0.436 Sum_probs=236.4
Q ss_pred ccccccccccCCCcchHHHHHHHHhCChHHHHHHHhhcccccccCCCC-CCchHHHHHHHHHHHHhcCCCCCccChHHHH
Q 002523 335 CLLGLTGLRNLGNTCFMNSAIQCLAHTPEIVDYFLGDYQKEINYENPL-GLNGELALAFGDLLRKLWAPGGIPVAPRMFK 413 (912)
Q Consensus 335 ~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~ll~~~~~~~~~~n~l-~~~~~l~~~l~~L~~~l~~~~~~~i~P~~~~ 413 (912)
.+-|+|||.|-|+|||||+++|-|.++|.++.-++..++. .+++. .-...+.+.++.+|..+..+.-.++-|+.|.
T Consensus 91 pp~gfVGLKNagatcyMNav~QQlymIP~Lrh~ll~~~~~---td~pd~s~~e~vl~~lQ~iF~hL~~s~lQyyVPeg~W 167 (944)
T KOG1866|consen 91 PPEGFVGLKNAGATCYMNAVIQQLYMIPGLRHLLLAFVGT---TDLPDMSGDEKVLRHLQVIFGHLAASQLQYYVPEGFW 167 (944)
T ss_pred CCcceeeecCCCchHHHhhhhhhhhhcccccchhhhhccc---ccchhhcchHHHHHHHHHHHHHHHHHhhhhhcchhHH
Confidence 3569999999999999999999999999999977654433 12221 1123388999999999988888899999999
Q ss_pred HHHhhhCCCCCCCCcCCHHHHHHHHHHHHHHHhhhcccCCccccccCCCCChHHHHHHHHHhhhcCCCccccccccEEEE
Q 002523 414 LKLANFAPQFSGYNQHDSQEFLAFLLDGLHEDLNRVKCKPYLEAKDAEGQPEEEVAEEYWRNHRARNDSIIVDLCQGQYR 493 (912)
Q Consensus 414 ~~l~~~~~~F~~~~QqDA~EfL~~LLd~L~eel~~~~~k~~~~~~d~~~~~~~~~a~e~w~~~~~~~~SiI~~lF~G~~~ 493 (912)
+.++-........+||||-||++.|||.+.|.|++.... -++...|+|.+.
T Consensus 168 k~Fr~~~~pln~reqhDA~eFf~sLld~~De~LKklg~p-----------------------------~lf~n~f~G~ys 218 (944)
T KOG1866|consen 168 KQFRLWGEPLNLREQHDALEFFNSLLDSLDEALKKLGHP-----------------------------QLFSNTFGGSYS 218 (944)
T ss_pred HHhhccCCccchHhhhhHHHHHHHHHHHHHHHHHHhCCc-----------------------------HHHHHHhcCccc
Confidence 998877766778899999999999999999999765432 246778999999
Q ss_pred EEEecCCCCCeeeeeecceeEEecCCCCCccceEEEEEcCCCCCCCeeeEEEeCCCCCHHHHHHHHHhhcCCCCCCcEEE
Q 002523 494 SMLVCPVCNKVSVTFDPLMYLSLPIPSTTMRTMTVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALSTKCFLRNHEKLLV 573 (912)
Q Consensus 494 s~l~C~~C~~~s~~~e~F~~LsL~Ip~~~~~~~~v~~~~~d~~~~p~~~~v~v~k~~~~~~l~~~l~~~~~~~~~~~l~~ 573 (912)
.+-+|.+|-+.-...|+|++|+|.|..
T Consensus 219 dqKIC~~CpHRY~~eE~F~~l~l~i~~----------------------------------------------------- 245 (944)
T KOG1866|consen 219 DQKICQGCPHRYECEESFTTLNLDIRH----------------------------------------------------- 245 (944)
T ss_pred hhhhhccCCcccCccccceeeeeeccc-----------------------------------------------------
Confidence 999999999999999999999998641
Q ss_pred EEEecceeeeeccCCcccccccCCCCcEEEEEcCCCCCCCceEEEeeecccccccccccccceeeeccceEEEcCCCCCh
Q 002523 574 AEIYRSKIFRVLDEPSDLLGLIRDEDKLVAYRLPKDSETPSLVLFMHERKEESCHLGRLSLEWKIFGTPLVGRLSDLTNG 653 (912)
Q Consensus 574 ~ei~~~~i~~~~~~~~~~~~~i~~~d~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~v~~~~~~ 653 (912)
T Consensus 246 -------------------------------------------------------------------------------- 245 (944)
T KOG1866|consen 246 -------------------------------------------------------------------------------- 245 (944)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHHHhcCCccCCCCCCCCcccccCCCCCCCcccccccccccCCCCCCCCCCCCCCCCCCCCceeEEEecCCCCcc
Q 002523 654 SDIRKLFLKLLDPFLMPVGDDSDFSDEAGKIDNGDSIVEDVTSSRVSDNDAVSDSSEAGDEPHLSDDFQFYRLDSIRPTE 733 (912)
Q Consensus 654 ~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 733 (912)
T Consensus 246 -------------------------------------------------------------------------------- 245 (944)
T KOG1866|consen 246 -------------------------------------------------------------------------------- 245 (944)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCCcCCCCCCeEEEEecChhhHhhhhhhhhhhhhhccccccccCCCCCccCHHHHHHHhhCcccCCCCCCCCCCC
Q 002523 734 IKMNEPLSISDFAKPLTIHVQWAEKMIEKYDTCLLSSLMEVCKPQLFTRMPPESVSLYKCLEAFLKEEPLGPEDMWYCPR 813 (912)
Q Consensus 734 ~~~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~isL~dCL~~F~~~E~L~~~d~wyC~~ 813 (912)
-+|++.|+.|.+.|.|+|.|+|+|++
T Consensus 246 ------------------------------------------------------~nLeesLeqfv~gevlEG~nAYhCeK 271 (944)
T KOG1866|consen 246 ------------------------------------------------------QNLEESLEQFVKGEVLEGANAYHCEK 271 (944)
T ss_pred ------------------------------------------------------chHHHHHHHHHHHHHhcCcchhhhhh
Confidence 16899999999999999999999999
Q ss_pred cccccceEEEEEeecCCceeEEEEeeeEEc--CceecccceEEecCCCCCCCCcccccCC----------------CCCC
Q 002523 814 CKKHWQASKKLDLWRSPDILVIHLKRFSFS--RYFKSKLDTYVDFPIDDLDLSNYVCCKN----------------SQLS 875 (912)
Q Consensus 814 Ck~~~~AtKk~~l~~lP~iLiIHLKRF~~~--~~~~~Ki~~~V~FPi~~LDls~~v~~~~----------------~~~~ 875 (912)
|++++...|+..|.+||++|+||||||.|+ +....|-+..+.|| ..|||.||....- ..++
T Consensus 272 CdeK~~TvkRt~ik~LPsvl~IqLkRF~yD~e~~~~iK~n~~frFP-~~ldMePYtvsg~a~~e~~~~~~g~~~e~s~~t 350 (944)
T KOG1866|consen 272 CDEKVDTVKRTCIKKLPSVLAIQLKRFDYDWERECAIKFNDYFRFP-RELDMEPYTVSGVAKLEGENVESGQQLEQSAGT 350 (944)
T ss_pred hhhhhHhHHHHHHhhCChhheehhhhccchhhhccccccchhcccc-hhhcCCceeehhhhhhccccCCcCcccccccCc
Confidence 999999999999999999999999999997 67788999999999 6999999986431 1267
Q ss_pred ccEEEEEEEEeeecCCCceEEEEEEe------CCeEEEE
Q 002523 876 NRYVLYAISNHYGGMGGGHYTAFVDV------SCVYSFH 908 (912)
Q Consensus 876 ~~YdL~AVinH~G~l~gGHYtAy~k~------~~~~~f~ 908 (912)
.+|+|+||+.|.|.+.+|||++|+|. +.||.||
T Consensus 351 ~~YeLvGVlvHSGqAsaGHYySfIk~rr~~~~~kWykfn 389 (944)
T KOG1866|consen 351 TKYELVGVLVHSGQASAGHYYSFIKQRRGEDGNKWYKFN 389 (944)
T ss_pred ceeEEEEEEEecccccCcchhhhhhhhccCCCCceEecc
Confidence 89999999999999999999999986 3488887
No 27
>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.7e-36 Score=337.42 Aligned_cols=267 Identities=25% Similarity=0.408 Sum_probs=225.6
Q ss_pred cccccccccCCCcchHHHHHHHHhCChHHHHHHHhhcccccccCCCCCCchHHHHHHHHHHHHhcCCCCCccChHHHHHH
Q 002523 336 LLGLTGLRNLGNTCFMNSAIQCLAHTPEIVDYFLGDYQKEINYENPLGLNGELALAFGDLLRKLWAPGGIPVAPRMFKLK 415 (912)
Q Consensus 336 ~~g~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~ll~~~~~~~~~~n~l~~~~~l~~~l~~L~~~l~~~~~~~i~P~~~~~~ 415 (912)
..|.+||.|+|.||||||.||+|+.+..||+.+. .+.+++|.+ ...++.||+++|..|. ....+++..+|...
T Consensus 190 eTGYVGlrNqGATCYmNSLlQslffi~~FRk~Vy-----~ipTd~p~g-rdSValaLQr~Fynlq-~~~~PvdTteltrs 262 (1089)
T COG5077 190 ETGYVGLRNQGATCYMNSLLQSLFFIAKFRKDVY-----GIPTDHPRG-RDSVALALQRLFYNLQ-TGEEPVDTTELTRS 262 (1089)
T ss_pred ceeeeeeccCCceeeHHHHHHHHHHHHHHHHHhh-----cCCCCCCCc-cchHHHHHHHHHHHHh-ccCCCcchHHhhhh
Confidence 4699999999999999999999999999998774 345555544 3579999999999995 45689999999887
Q ss_pred HhhhCCCCCCCCcCCHHHHHHHHHHHHHHHhhhcccCCccccccCCCCChHHHHHHHHHhhhcCCCccccccccEEEEEE
Q 002523 416 LANFAPQFSGYNQHDSQEFLAFLLDGLHEDLNRVKCKPYLEAKDAEGQPEEEVAEEYWRNHRARNDSIIVDLCQGQYRSM 495 (912)
Q Consensus 416 l~~~~~~F~~~~QqDA~EfL~~LLd~L~eel~~~~~k~~~~~~d~~~~~~~~~a~e~w~~~~~~~~SiI~~lF~G~~~s~ 495 (912)
.+.. .+..++|||.|||-..|.|.|+..++.... ...+..+|-|.+++.
T Consensus 263 fgWd--s~dsf~QHDiqEfnrVl~DnLEksmrgt~V-----------------------------Enaln~ifVgkmksy 311 (1089)
T COG5077 263 FGWD--SDDSFMQHDIQEFNRVLQDNLEKSMRGTVV-----------------------------ENALNGIFVGKMKSY 311 (1089)
T ss_pred cCcc--cchHHHHHhHHHHHHHHHHHHHHhhcCChh-----------------------------hhHHhHHHHHHhhce
Confidence 7653 466789999999999999999864432111 112778999999999
Q ss_pred EecCCCCCeeeeeecceeEEecCCCCCccceEEEEEcCCCCCCCeeeEEEeCCCCCHHHHHHHHHhhcCCCCCCcEEEEE
Q 002523 496 LVCPVCNKVSVTFDPLMYLSLPIPSTTMRTMTVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALSTKCFLRNHEKLLVAE 575 (912)
Q Consensus 496 l~C~~C~~~s~~~e~F~~LsL~Ip~~~~~~~~v~~~~~d~~~~p~~~~v~v~k~~~~~~l~~~l~~~~~~~~~~~l~~~e 575 (912)
+.|.+-.++|.+.|.|+++.|++..
T Consensus 312 ikCvnvnyEsarvedfwdiqlNvK~------------------------------------------------------- 336 (1089)
T COG5077 312 IKCVNVNYESARVEDFWDIQLNVKG------------------------------------------------------- 336 (1089)
T ss_pred eeEEEechhhhhHHHHHHHHhcccc-------------------------------------------------------
Confidence 9999999999888888888887541
Q ss_pred EecceeeeeccCCcccccccCCCCcEEEEEcCCCCCCCceEEEeeecccccccccccccceeeeccceEEEcCCCCChhH
Q 002523 576 IYRSKIFRVLDEPSDLLGLIRDEDKLVAYRLPKDSETPSLVLFMHERKEESCHLGRLSLEWKIFGTPLVGRLSDLTNGSD 655 (912)
Q Consensus 576 i~~~~i~~~~~~~~~~~~~i~~~d~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~v~~~~~~~~ 655 (912)
T Consensus 337 -------------------------------------------------------------------------------- 336 (1089)
T COG5077 337 -------------------------------------------------------------------------------- 336 (1089)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhcCCccCCCCCCCCcccccCCCCCCCcccccccccccCCCCCCCCCCCCCCCCCCCCceeEEEecCCCCcccc
Q 002523 656 IRKLFLKLLDPFLMPVGDDSDFSDEAGKIDNGDSIVEDVTSSRVSDNDAVSDSSEAGDEPHLSDDFQFYRLDSIRPTEIK 735 (912)
Q Consensus 656 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 735 (912)
T Consensus 337 -------------------------------------------------------------------------------- 336 (1089)
T COG5077 337 -------------------------------------------------------------------------------- 336 (1089)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCcCCCCCCeEEEEecChhhHhhhhhhhhhhhhhccccccccCCCCCccCHHHHHHHhhCcccCCCCCCCCCCCcc
Q 002523 736 MNEPLSISDFAKPLTIHVQWAEKMIEKYDTCLLSSLMEVCKPQLFTRMPPESVSLYKCLEAFLKEEPLGPEDMWYCPRCK 815 (912)
Q Consensus 736 ~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~isL~dCL~~F~~~E~L~~~d~wyC~~Ck 815 (912)
.-+|+|.++.|.+.|.|+|+|.|+|++-
T Consensus 337 ---------------------------------------------------~knLqeSfr~yIqvE~l~GdN~Y~ae~~- 364 (1089)
T COG5077 337 ---------------------------------------------------MKNLQESFRRYIQVETLDGDNRYNAEKH- 364 (1089)
T ss_pred ---------------------------------------------------hhhHHHHHHHhhhheeccCCcccccccc-
Confidence 0168999999999999999999999886
Q ss_pred cccceEEEEEeecCCceeEEEEeeeEEc--CceecccceEEecCCCCCCCCcccccCCC---CCCccEEEEEEEEeeecC
Q 002523 816 KHWQASKKLDLWRSPDILVIHLKRFSFS--RYFKSKLDTYVDFPIDDLDLSNYVCCKNS---QLSNRYVLYAISNHYGGM 890 (912)
Q Consensus 816 ~~~~AtKk~~l~~lP~iLiIHLKRF~~~--~~~~~Ki~~~V~FPi~~LDls~~v~~~~~---~~~~~YdL~AVinH~G~l 890 (912)
..|.|.|-.-+.++|+||-++||||.|+ +.+.-||++.-+|| ..+||.||+..... ...+.|.||||.+|.|.+
T Consensus 365 GlqdAkKGViFeSlPpVlhlqLKRFeyDfe~d~mvKINDryEFP-~eiDl~pfld~da~ksen~d~vY~LygVlVHsGDl 443 (1089)
T COG5077 365 GLQDAKKGVIFESLPPVLHLQLKRFEYDFERDMMVKINDRYEFP-LEIDLLPFLDRDADKSENSDAVYVLYGVLVHSGDL 443 (1089)
T ss_pred cchhhccceeeccCchHHHHHHHHhccccccCceeeecccccCc-chhccccccCchhhhhcccCcEEEEEEEEEecccc
Confidence 5689999999999999999999999986 66788999999999 59999999975432 245899999999999999
Q ss_pred CCceEEEEEE---eCCeEEEE
Q 002523 891 GGGHYTAFVD---VSCVYSFH 908 (912)
Q Consensus 891 ~gGHYtAy~k---~~~~~~f~ 908 (912)
++|||+|++| ++.||.|+
T Consensus 444 ~~GHyYallKpe~dg~Wykfd 464 (1089)
T COG5077 444 HEGHYYALLKPEKDGRWYKFD 464 (1089)
T ss_pred CCceEEEEeccccCCCceeec
Confidence 9999999998 46699987
No 28
>cd02257 Peptidase_C19 Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=7.2e-33 Score=293.80 Aligned_cols=117 Identities=44% Similarity=0.695 Sum_probs=102.3
Q ss_pred cCHHHHHHHhhCcccCCCCCCCCCCCcc--cccceEEEEEeecCCceeEEEEeeeEEcC-ceecccceEEecCCCCCCCC
Q 002523 788 VSLYKCLEAFLKEEPLGPEDMWYCPRCK--KHWQASKKLDLWRSPDILVIHLKRFSFSR-YFKSKLDTYVDFPIDDLDLS 864 (912)
Q Consensus 788 isL~dCL~~F~~~E~L~~~d~wyC~~Ck--~~~~AtKk~~l~~lP~iLiIHLKRF~~~~-~~~~Ki~~~V~FPi~~LDls 864 (912)
.+|++||+.++..|.+.+ ..|..|+ +.+.+.++..|.++|++|+|||+||.+.. ....|+++.|.|| ..|++.
T Consensus 99 ~~l~~~l~~~~~~e~~~~---~~~~~c~~~~~~~~~~~~~i~~lP~~L~i~l~R~~~~~~~~~~k~~~~v~~~-~~l~~~ 174 (255)
T cd02257 99 VSLEDCLEKFFKEEILEG---DNCYKCEKKKKQEATKRLKIKKLPPVLIIHLKRFSFNEDGTKEKLNTKVSFP-LELDLS 174 (255)
T ss_pred CcHHHHHHHhhhhhccCC---CCcccCCCCcccceeEEEecccCCceeEEEeeceeeccccccccCCCeEeCC-CcccCc
Confidence 389999999999998865 5789998 68899999999999999999999999987 7788999999999 699999
Q ss_pred ccccc-----CCCCCCccEEEEEEEEeee-cCCCceEEEEEEeC---CeEEEE
Q 002523 865 NYVCC-----KNSQLSNRYVLYAISNHYG-GMGGGHYTAFVDVS---CVYSFH 908 (912)
Q Consensus 865 ~~v~~-----~~~~~~~~YdL~AVinH~G-~l~gGHYtAy~k~~---~~~~f~ 908 (912)
.++.. ........|+|+|||.|.| +.++|||+||+|.. .||.||
T Consensus 175 ~~~~~~~~~~~~~~~~~~Y~L~~vi~h~G~~~~~GHY~~~~~~~~~~~W~~~n 227 (255)
T cd02257 175 PYLSEGEKDSDSDNGSYKYELVAVVVHSGTSADSGHYVAYVKDPSDGKWYKFN 227 (255)
T ss_pred cccccccccccccCCCccEEEEEEEEEecCCCCCcCeEEEEeCCCCCceEEEe
Confidence 98752 2223678899999999999 55999999999985 488876
No 29
>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-33 Score=303.82 Aligned_cols=146 Identities=27% Similarity=0.392 Sum_probs=117.0
Q ss_pred ccccccCCCcchHHHHHHHHhCChHHHHHHHhhccccc-ccCCCCCCchHHHHHHHHHHHHhcCCC----CCccChHHHH
Q 002523 339 LTGLRNLGNTCFMNSAIQCLAHTPEIVDYFLGDYQKEI-NYENPLGLNGELALAFGDLLRKLWAPG----GIPVAPRMFK 413 (912)
Q Consensus 339 ~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~ll~~~~~~~-~~~n~l~~~~~l~~~l~~L~~~l~~~~----~~~i~P~~~~ 413 (912)
.+||.|+||+||+||++|.|++...+..-+....+..+ ...+| ..+|.+++.+|+..|.... ...++|..|+
T Consensus 303 ~~GliNlGNsCYl~SviqSlv~~~v~~~~~d~l~~~~~~~~~~P---~~~l~CQl~kll~~mk~~p~~~y~ngi~p~~fk 379 (749)
T COG5207 303 YVGLINLGNSCYLSSVIQSLVGYAVSKEEFDLLQHFEICYMKNP---LECLFCQLMKLLSKMKETPDNEYVNGISPLDFK 379 (749)
T ss_pred ccceEecCCeeeHHHHHHHHhccccchhhhhhhccceeeeecCC---chhHHHHHHHHHhhccCCCCccccCCcChhhHH
Confidence 79999999999999999999999888876653322221 22333 3578999999999997644 3468999999
Q ss_pred HHHhhhCCCCCCCCcCCHHHHHHHHHHHHHHHhhhcccCCccccccCCCCChHHHHHHHHHhhhcCCCccccccccEEEE
Q 002523 414 LKLANFAPQFSGYNQHDSQEFLAFLLDGLHEDLNRVKCKPYLEAKDAEGQPEEEVAEEYWRNHRARNDSIIVDLCQGQYR 493 (912)
Q Consensus 414 ~~l~~~~~~F~~~~QqDA~EfL~~LLd~L~eel~~~~~k~~~~~~d~~~~~~~~~a~e~w~~~~~~~~SiI~~lF~G~~~ 493 (912)
..+++-+|.|..++||||+|||.+||+.|.+..... ..+.|.++|...+.
T Consensus 380 ~~igq~h~eFg~~~QQDA~EFLlfLL~kirk~~~S~------------------------------~~~~It~lf~Fe~e 429 (749)
T COG5207 380 MLIGQDHPEFGKFAQQDAHEFLLFLLEKIRKGERSY------------------------------LIPPITSLFEFEVE 429 (749)
T ss_pred HHHcCCchhhhhhhhhhHHHHHHHHHHHHhhccchh------------------------------cCCCcchhhhhhhc
Confidence 999999999999999999999999999998543222 13458899999999
Q ss_pred EEEecCCCCCeeeeeecceeEEec
Q 002523 494 SMLVCPVCNKVSVTFDPLMYLSLP 517 (912)
Q Consensus 494 s~l~C~~C~~~s~~~e~F~~LsL~ 517 (912)
.++.|..|+.++.++++...+.++
T Consensus 430 ~rlsC~~C~~v~ySye~~~~i~i~ 453 (749)
T COG5207 430 RRLSCSGCMDVSYSYESMLMICIF 453 (749)
T ss_pred ceecccccccccccccceEEEEee
Confidence 999999999999987765444433
No 30
>cd02672 Peptidase_C19P A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=3.9e-33 Score=301.11 Aligned_cols=116 Identities=18% Similarity=0.126 Sum_probs=98.6
Q ss_pred cCHHHHHHHhhCcccCCCCCCCCCCCcccccceEEEEEeecCCc----eeEEEEeeeEEcC-------ceecccceEEec
Q 002523 788 VSLYKCLEAFLKEEPLGPEDMWYCPRCKKHWQASKKLDLWRSPD----ILVIHLKRFSFSR-------YFKSKLDTYVDF 856 (912)
Q Consensus 788 isL~dCL~~F~~~E~L~~~d~wyC~~Ck~~~~AtKk~~l~~lP~----iLiIHLKRF~~~~-------~~~~Ki~~~V~F 856 (912)
++|.+||+.|+++|.. +.|+|++|++++.|+|++.|+++|+ ||+||||||.+.. ....|++..|.|
T Consensus 117 ~sl~~cL~~~~~~E~~---~~~~C~~C~~~~~a~k~~~i~~lP~~L~~VL~i~lkrf~~~~~~~~~~~~~~~~~~~~v~f 193 (268)
T cd02672 117 STFLQLLKRSLDLEKV---TKAWCDTCCKYQPLEQTTSIRHLPDILLLVLVINLSVTNGEFDDINVVLPSGKVMQNKVSP 193 (268)
T ss_pred CCHHHHHHHHhhhhhc---ccccccccCcccccEEEEEeecCCCcccceEEEEEeccChhhcccCcceeEEEecCCeecc
Confidence 5899999999999954 5689999999999999999999999 9999999999653 235688999999
Q ss_pred CCCCCCCCcccccCCCCCCccEEEEEEEEeeec-CCCceEEEEEEeC-------CeEEEE
Q 002523 857 PIDDLDLSNYVCCKNSQLSNRYVLYAISNHYGG-MGGGHYTAFVDVS-------CVYSFH 908 (912)
Q Consensus 857 Pi~~LDls~~v~~~~~~~~~~YdL~AVinH~G~-l~gGHYtAy~k~~-------~~~~f~ 908 (912)
| ..+|+..+...... ...+|+|+|||+|.|. .++|||+||+|.+ .||.||
T Consensus 194 ~-~~~~~~~~~~~~~~-~~~~Y~L~gvV~hig~~~~~GHyva~vk~~~~~~~~~~WylFN 251 (268)
T cd02672 194 K-AIDHDKLVKNRGQE-SIYKYELVGYVCEINDSSRGQHNVVFVIKVNEESTHGRWYLFN 251 (268)
T ss_pred c-ccccchhhhccCCC-CCceEEEEEEEEEecCCCCCCcEEEEEEccCCCCCCCcEEEec
Confidence 9 47777766554433 5688999999999994 5999999999983 499887
No 31
>KOG4598 consensus Putative ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.7e-34 Score=319.34 Aligned_cols=119 Identities=35% Similarity=0.621 Sum_probs=107.7
Q ss_pred CHHHHHHHhhCcccCCCCCCCCCCCcccccceEEEEEeecCCceeEEEEeeeEEc--CceecccceEEecCCCCCCCCcc
Q 002523 789 SLYKCLEAFLKEEPLGPEDMWYCPRCKKHWQASKKLDLWRSPDILVIHLKRFSFS--RYFKSKLDTYVDFPIDDLDLSNY 866 (912)
Q Consensus 789 sL~dCL~~F~~~E~L~~~d~wyC~~Ck~~~~AtKk~~l~~lP~iLiIHLKRF~~~--~~~~~Ki~~~V~FPi~~LDls~~ 866 (912)
+++++|.+|.++|.|+|.|+|-|++||+++.|.|-+.|.+.|-+|.||||||.|+ ...|.|+++.|.|| +.|||..|
T Consensus 215 sieeal~afvqpe~ldg~nqy~ce~ck~k~dahkgl~~~~fpy~lt~~lkrfdfdy~tmhriklnd~~tfp-~~l~ln~~ 293 (1203)
T KOG4598|consen 215 SVEEALTAFVQPELLDGSNQYMCENCKSKQDAHKGLRITQFPYLLTIQLKRFDFDYNTMHRIKLNDKMTFP-DVLDLNDY 293 (1203)
T ss_pred hHHHHHHHhcChhhcCCccHHHHhhhhhhhhhhcCceeeccceeeEEeeecccccchheeeeeecccccCc-ccccHHHh
Confidence 7899999999999999999999999999999999999999999999999998865 56689999999999 89999999
Q ss_pred cccCCCC-----------------------------------------------------------------CCccEEEE
Q 002523 867 VCCKNSQ-----------------------------------------------------------------LSNRYVLY 881 (912)
Q Consensus 867 v~~~~~~-----------------------------------------------------------------~~~~YdL~ 881 (912)
+...... ++.+|+|+
T Consensus 294 in~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~s~~~~~~~~n~~~g~~~~~~~~~~~~~~sg~~~yelf 373 (1203)
T KOG4598|consen 294 VNKEKRSTTSSAWQQIGKNKSENEEDDMELGSPNPKRCTPGVQSPNRYQGSENVCVGQPIDHAAVDDIVKTSGDNVYELF 373 (1203)
T ss_pred hhhccCCcchhHhhhcccccccccccccccCCCCcccCcccccCcccccCccccccCCcCchhhhhhHhhcCCccHHHhh
Confidence 8632110 78999999
Q ss_pred EEEEeeecCCCceEEEEEEe---CCeEEEE
Q 002523 882 AISNHYGGMGGGHYTAFVDV---SCVYSFH 908 (912)
Q Consensus 882 AVinH~G~l~gGHYtAy~k~---~~~~~f~ 908 (912)
||..|.|++.||||.||+|+ +.||.||
T Consensus 374 ~imihsg~a~gghy~ayik~~d~~~w~~fn 403 (1203)
T KOG4598|consen 374 SVMVHSGNAAGGHYFAYIKNLDQDRWYVFN 403 (1203)
T ss_pred hhheecCCCCCceeeeeecccCcCceEEec
Confidence 99999999999999999998 4577665
No 32
>KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=7.5e-32 Score=338.26 Aligned_cols=269 Identities=26% Similarity=0.370 Sum_probs=226.8
Q ss_pred ccc-cccccCCCcchHHHHHHHHhCChHHHHHHHhhcccccccCCCCCCchHHHHHHHHHHHHhcCCCCCccChHHHHHH
Q 002523 337 LGL-TGLRNLGNTCFMNSAIQCLAHTPEIVDYFLGDYQKEINYENPLGLNGELALAFGDLLRKLWAPGGIPVAPRMFKLK 415 (912)
Q Consensus 337 ~g~-~GL~NlGNTCYmNSvLQ~L~~~p~f~~~ll~~~~~~~~~~n~l~~~~~l~~~l~~L~~~l~~~~~~~i~P~~~~~~ 415 (912)
.|. +||.|+||||||||+||+|+.++.||+.+...-. ..........+..+|+.||..|..+..++|.|..+...
T Consensus 167 tg~~vGL~N~GaTCY~NsllQ~lf~~~~FR~~Vy~~~~----~~~~~~~~~~v~~~lq~lF~~LQ~s~~k~Vdt~~~~~~ 242 (1093)
T KOG1863|consen 167 TGFPVGLKNLGATCYVNSLLQVLFLIPEFRRAVYSIPP----FTGHEDPRRSIPLALQRLFYELQMSKRKYVDTSELTKS 242 (1093)
T ss_pred CCCCccccCCCceeeehHHHHHHHccHHHHHHHhcCCC----CCCcccccchHHHHHHHHHHHHhhcCCCCcCchhhhhh
Confidence 455 9999999999999999999999999998864311 11122223459999999999999888889999999999
Q ss_pred HhhhCCCCCCCCcCCHHHHHHHHHHHHHHHhhhcccCCccccccCCCCChHHHHHHHHHhhhcCCCccccccccEEEEEE
Q 002523 416 LANFAPQFSGYNQHDSQEFLAFLLDGLHEDLNRVKCKPYLEAKDAEGQPEEEVAEEYWRNHRARNDSIIVDLCQGQYRSM 495 (912)
Q Consensus 416 l~~~~~~F~~~~QqDA~EfL~~LLd~L~eel~~~~~k~~~~~~d~~~~~~~~~a~e~w~~~~~~~~SiI~~lF~G~~~s~ 495 (912)
++... ...++|||+|||+..|+|.|+..+..... ...|.++|.|.+++.
T Consensus 243 ~~~~~--~~~~~QqDvqEf~~~l~d~LE~~~~~~~~-----------------------------~~~l~~lf~g~~~~~ 291 (1093)
T KOG1863|consen 243 LGWDS--NDSFEQQDVQEFLTKLLDWLEDSMIDAKV-----------------------------ENTLQDLFTGKMKSV 291 (1093)
T ss_pred hhccc--ccHHhhhhHHHHHHHHHHHHHhhccchhh-----------------------------hhhhhhhhcCCcceE
Confidence 98766 55679999999999999999977643321 234889999999999
Q ss_pred EecCCCCCeeeeeecceeEEecCCCCCccceEEEEEcCCCCCCCeeeEEEeCCCCCHHHHHHHHHhhcCCCCCCcEEEEE
Q 002523 496 LVCPVCNKVSVTFDPLMYLSLPIPSTTMRTMTVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALSTKCFLRNHEKLLVAE 575 (912)
Q Consensus 496 l~C~~C~~~s~~~e~F~~LsL~Ip~~~~~~~~v~~~~~d~~~~p~~~~v~v~k~~~~~~l~~~l~~~~~~~~~~~l~~~e 575 (912)
+.|..|...+.+.|.|+++.|++-.
T Consensus 292 i~c~~~~~~s~r~e~f~d~ql~~~g------------------------------------------------------- 316 (1093)
T KOG1863|consen 292 IKCIDVDFESSRSESFLDLQLNGKG------------------------------------------------------- 316 (1093)
T ss_pred EEEEeeeeeccccccccCccccccc-------------------------------------------------------
Confidence 9999999999888988888877541
Q ss_pred EecceeeeeccCCcccccccCCCCcEEEEEcCCCCCCCceEEEeeecccccccccccccceeeeccceEEEcCCCCChhH
Q 002523 576 IYRSKIFRVLDEPSDLLGLIRDEDKLVAYRLPKDSETPSLVLFMHERKEESCHLGRLSLEWKIFGTPLVGRLSDLTNGSD 655 (912)
Q Consensus 576 i~~~~i~~~~~~~~~~~~~i~~~d~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~v~~~~~~~~ 655 (912)
T Consensus 317 -------------------------------------------------------------------------------- 316 (1093)
T KOG1863|consen 317 -------------------------------------------------------------------------------- 316 (1093)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhcCCccCCCCCCCCcccccCCCCCCCcccccccccccCCCCCCCCCCCCCCCCCCCCceeEEEecCCCCcccc
Q 002523 656 IRKLFLKLLDPFLMPVGDDSDFSDEAGKIDNGDSIVEDVTSSRVSDNDAVSDSSEAGDEPHLSDDFQFYRLDSIRPTEIK 735 (912)
Q Consensus 656 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 735 (912)
T Consensus 317 -------------------------------------------------------------------------------- 316 (1093)
T KOG1863|consen 317 -------------------------------------------------------------------------------- 316 (1093)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCcCCCCCCeEEEEecChhhHhhhhhhhhhhhhhccccccccCCCCCccCHHHHHHHhhCcccCCCCCCCCCCCcc
Q 002523 736 MNEPLSISDFAKPLTIHVQWAEKMIEKYDTCLLSSLMEVCKPQLFTRMPPESVSLYKCLEAFLKEEPLGPEDMWYCPRCK 815 (912)
Q Consensus 736 ~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~isL~dCL~~F~~~E~L~~~d~wyC~~Ck 815 (912)
.-+|.++|+.|++.|.|.++|. ||..|.
T Consensus 317 ---------------------------------------------------~~nl~~sf~~y~~~E~l~gdn~-~~~~~~ 344 (1093)
T KOG1863|consen 317 ---------------------------------------------------VKNLEDSLHLYFEAEILLGDNK-YDAECH 344 (1093)
T ss_pred ---------------------------------------------------hhhHHHHHHHhhhHHHhcCCcc-cccccc
Confidence 1158899999999999999998 999999
Q ss_pred cccceEEEEEeecCCceeEEEEeeeEEc--CceecccceEEecCCCCCCCCcccccC--C-CCCCccEEEEEEEEeeecC
Q 002523 816 KHWQASKKLDLWRSPDILVIHLKRFSFS--RYFKSKLDTYVDFPIDDLDLSNYVCCK--N-SQLSNRYVLYAISNHYGGM 890 (912)
Q Consensus 816 ~~~~AtKk~~l~~lP~iLiIHLKRF~~~--~~~~~Ki~~~V~FPi~~LDls~~v~~~--~-~~~~~~YdL~AVinH~G~l 890 (912)
..+.|.|.+.+.+||+||.|||+||.|. +....||.....|| ..|+|.+|+..+ . ....+.|+|+||..|.|..
T Consensus 345 ~~~~a~k~~~f~~lPpvl~~qL~Rf~~~~~~~~~~Ki~d~~~fp-~~i~~d~~~~~~~~~~~~~~~~y~l~~v~vh~g~~ 423 (1093)
T KOG1863|consen 345 GLQDAKKGVLFDSLPPVLFIQLMRFEYDFSTGQKIKINDKFEFP-LIIDMDRYLSRFKAEESERSAVYSLHAVLVHSGDA 423 (1093)
T ss_pred chhhhhcceeeccCCchhhhhhhheeeeccCCceeehhhccCCc-cccccchhccccchhhhhccceeccchhhcccccc
Confidence 9999999999999999999999999996 56688999999999 599999998741 1 1133599999999998899
Q ss_pred CCceEEEEEEe---CCeEEEE
Q 002523 891 GGGHYTAFVDV---SCVYSFH 908 (912)
Q Consensus 891 ~gGHYtAy~k~---~~~~~f~ 908 (912)
++|||+||++. +.|+.|+
T Consensus 424 ~~ghy~~~i~~~~~~~w~kfd 444 (1093)
T KOG1863|consen 424 HSGHYVAYINPKLDGKWVKFD 444 (1093)
T ss_pred cCccceeeecchhhccceecc
Confidence 99999999994 4587765
No 33
>KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=7.9e-30 Score=297.23 Aligned_cols=303 Identities=25% Similarity=0.374 Sum_probs=226.6
Q ss_pred cccccccccCCCcchHH--HHHHHHhCChHHHHHHHhhcccccccCCCCCCchHHHHHHHHHHHHhcCC--CCCccChHH
Q 002523 336 LLGLTGLRNLGNTCFMN--SAIQCLAHTPEIVDYFLGDYQKEINYENPLGLNGELALAFGDLLRKLWAP--GGIPVAPRM 411 (912)
Q Consensus 336 ~~g~~GL~NlGNTCYmN--SvLQ~L~~~p~f~~~ll~~~~~~~~~~n~l~~~~~l~~~l~~L~~~l~~~--~~~~i~P~~ 411 (912)
..+.-|..|.+++|+-| ++.|.+..+-+++...+.... ......+....+...+..++...... ....+.|..
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~p~~ 305 (587)
T KOG1864|consen 229 NERVFGTNNFSNTCCCNFQSVEEALYFCRPFREAVLLYLT---SLKRSYIIKEELLTCLLDLFSSISSRKKLVGRISPTR 305 (587)
T ss_pred cccccCccccCccccccchhhHHHHHhhhhhcccccchhh---cccchhhhhHHHHHHhhhhccchhhhcccccccCcch
Confidence 35678999999999999 999999988888754332111 11111122333444444444433221 234589999
Q ss_pred HHHHHhhhCCCCCCCCcCCHHHHHHHHHHHHHHHhhhcccCCccccc--cCCCCChHHHHHHHH--HhhhcCCCcccccc
Q 002523 412 FKLKLANFAPQFSGYNQHDSQEFLAFLLDGLHEDLNRVKCKPYLEAK--DAEGQPEEEVAEEYW--RNHRARNDSIIVDL 487 (912)
Q Consensus 412 ~~~~l~~~~~~F~~~~QqDA~EfL~~LLd~L~eel~~~~~k~~~~~~--d~~~~~~~~~a~e~w--~~~~~~~~SiI~~l 487 (912)
|...+++....|..++|||||||+.++++.++|.+.+.......... .++|......+ -+| ..+......++..+
T Consensus 306 ~~~~~~~~~~~f~~~~qQda~eF~~~l~~~~~e~~~~~~~~~~~~~~~~~~~gn~~~~~~-~~~~~~~~~~~~~~~v~~l 384 (587)
T KOG1864|consen 306 FISDLIKENELFTNGMQQDAHEFLNFLLNEISETLERESSGTTTKVSPKESDGNSSTSAA-SWTNKGHHKSLRENWVSKL 384 (587)
T ss_pred hhhhhhhcCCccCchhhccHHHHhhhhccchhhhhhhhccCCcccccccCCCCccccccc-cccccccccccchhHHHHh
Confidence 99999999999999999999999999999999887654321111111 01221111110 001 13444566789999
Q ss_pred ccEEEEEEEecCCCCCeeeeeecceeEEecCCCCCccceEEEEEcCCCCCCCeeeEEEeCCCCCHHHHHHHHHhhcCCCC
Q 002523 488 CQGQYRSMLVCPVCNKVSVTFDPLMYLSLPIPSTTMRTMTVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALSTKCFLRN 567 (912)
Q Consensus 488 F~G~~~s~l~C~~C~~~s~~~e~F~~LsL~Ip~~~~~~~~v~~~~~d~~~~p~~~~v~v~k~~~~~~l~~~l~~~~~~~~ 567 (912)
|+|++..+..|..|+.++.+.+.|.+++++++..
T Consensus 385 f~g~l~~et~Clsc~t~T~~de~f~D~~~~v~~d---------------------------------------------- 418 (587)
T KOG1864|consen 385 FQGILTNETRCLSCETITSRDEGFLDLSVAVEID---------------------------------------------- 418 (587)
T ss_pred hcCeeeeeeeeccccccccccccccccceecccc----------------------------------------------
Confidence 9999999999999999999999999998887631
Q ss_pred CCcEEEEEEecceeeeeccCCcccccccCCCCcEEEEEcCCCCCCCceEEEeeecccccccccccccceeeeccceEEEc
Q 002523 568 HEKLLVAEIYRSKIFRVLDEPSDLLGLIRDEDKLVAYRLPKDSETPSLVLFMHERKEESCHLGRLSLEWKIFGTPLVGRL 647 (912)
Q Consensus 568 ~~~l~~~ei~~~~i~~~~~~~~~~~~~i~~~d~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~v 647 (912)
T Consensus 419 -------------------------------------------------------------------------------- 418 (587)
T KOG1864|consen 419 -------------------------------------------------------------------------------- 418 (587)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCChhHHHHHHHHhcCCccCCCCCCCCcccccCCCCCCCcccccccccccCCCCCCCCCCCCCCCCCCCCceeEEEec
Q 002523 648 SDLTNGSDIRKLFLKLLDPFLMPVGDDSDFSDEAGKIDNGDSIVEDVTSSRVSDNDAVSDSSEAGDEPHLSDDFQFYRLD 727 (912)
Q Consensus 648 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 727 (912)
T Consensus 419 -------------------------------------------------------------------------------- 418 (587)
T KOG1864|consen 419 -------------------------------------------------------------------------------- 418 (587)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcccccCCCCCcCCCCCCeEEEEecChhhHhhhhhhhhhhhhhccccccccCCCCCccCHHHHHHHhhCcccCCCCC
Q 002523 728 SIRPTEIKMNEPLSISDFAKPLTIHVQWAEKMIEKYDTCLLSSLMEVCKPQLFTRMPPESVSLYKCLEAFLKEEPLGPED 807 (912)
Q Consensus 728 ~~~~~~~~~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~isL~dCL~~F~~~E~L~~~d 807 (912)
+..++..||+.|.++|.|.++|
T Consensus 419 ----------------------------------------------------------e~~si~~~l~~~~~~e~l~g~n 440 (587)
T KOG1864|consen 419 ----------------------------------------------------------ENTSITNLLKSFSSTETLSGEN 440 (587)
T ss_pred ----------------------------------------------------------ccccHHHHHHHhcchhhccCCC
Confidence 0137889999999999999999
Q ss_pred CCCCCCcccccceEEEEEeecCCceeEEEEeeeEEcCc--eecccceEEecCCCCCCCCcccccCCCCCCccEEEEEEEE
Q 002523 808 MWYCPRCKKHWQASKKLDLWRSPDILVIHLKRFSFSRY--FKSKLDTYVDFPIDDLDLSNYVCCKNSQLSNRYVLYAISN 885 (912)
Q Consensus 808 ~wyC~~Ck~~~~AtKk~~l~~lP~iLiIHLKRF~~~~~--~~~Ki~~~V~FPi~~LDls~~v~~~~~~~~~~YdL~AVin 885 (912)
+++|++|...|.|.|.+.+.++|.+|+||||||+|.+. ...|+...|.||+ .|++.....+... +...|+|+|||+
T Consensus 441 ky~c~~c~s~qeae~~l~~k~lp~~L~l~Lkrfk~~~~~~~~~kl~~~v~~pl-el~l~~~~~~~~~-~~~~Y~L~avVv 518 (587)
T KOG1864|consen 441 KYSCENCCSLQEAERRLKIKKLPYVLTLHLKRFKYSEQQNRYTKLLYRVVFPL-ELRLKDTLKDDNN-PDRKYDLVAVVV 518 (587)
T ss_pred cccccccCchhhHHHhccccCCcceeeeehhcccccccccccccccccccccc-ceeeccccccccC-ccceeeEEEEEE
Confidence 99999999999999999999999999999999999853 3579999999996 8888665544332 247899999999
Q ss_pred eee-cCCCceEEEEEEeCC--eEEEE
Q 002523 886 HYG-GMGGGHYTAFVDVSC--VYSFH 908 (912)
Q Consensus 886 H~G-~l~gGHYtAy~k~~~--~~~f~ 908 (912)
|.| ++..|||+||+|... |+.|+
T Consensus 519 H~G~~p~~GHYia~~r~~~~nWl~fd 544 (587)
T KOG1864|consen 519 HLGSTPNRGHYVAYVKSLDFNWLLFD 544 (587)
T ss_pred eccCCCCCcceEEEEeeCCCCceecc
Confidence 999 999999999999854 65553
No 34
>cd02670 Peptidase_C19N A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.95 E-value=1e-27 Score=253.10 Aligned_cols=92 Identities=26% Similarity=0.483 Sum_probs=82.0
Q ss_pred ccCHHHHHHHhhCcccCCCCCCCCCCCcccccceEEEEEeecCCceeEEEEeeeEEcCceecccceEEecCCCCCCCCcc
Q 002523 787 SVSLYKCLEAFLKEEPLGPEDMWYCPRCKKHWQASKKLDLWRSPDILVIHLKRFSFSRYFKSKLDTYVDFPIDDLDLSNY 866 (912)
Q Consensus 787 ~isL~dCL~~F~~~E~L~~~d~wyC~~Ck~~~~AtKk~~l~~lP~iLiIHLKRF~~~~~~~~Ki~~~V~FPi~~LDls~~ 866 (912)
.++|++||+.|++.|. |+++|+|||||||||.++.+...|+++.|.|| ..|||++|
T Consensus 79 ~~tLedcLe~~~~~e~-----------------------i~~lP~vLiIhLKRF~~~~~~~~Kl~~~I~fP-~~Ldl~~~ 134 (241)
T cd02670 79 GITLEQCLEQYFNNSV-----------------------FAKAPSCLIICLKRYGKTEGKAQKMFKKILIP-DEIDIPDF 134 (241)
T ss_pred cCCHHHHHHHHhchhh-----------------------hhhCCCeEEEEEEccccCCCcceeCCcEECCC-CcCCchhh
Confidence 4699999999999996 99999999999999999886678999999999 69999999
Q ss_pred cccCC---------------------CCCCccEEEEEEEEeee-cCCCceEEEEEEeC
Q 002523 867 VCCKN---------------------SQLSNRYVLYAISNHYG-GMGGGHYTAFVDVS 902 (912)
Q Consensus 867 v~~~~---------------------~~~~~~YdL~AVinH~G-~l~gGHYtAy~k~~ 902 (912)
+.... ......|+|+|||+|+| ++.+||||||+|++
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVi~H~G~s~~sGHYva~vr~~ 192 (241)
T cd02670 135 VADDPRACSKCQLECRVCYDDKDFSPTCGKFKLSLCSAVCHRGTSLETGHYVAFVRYG 192 (241)
T ss_pred cccccccccccccccccccccccccCCCCCeEEEEEEEEEeCCCCCCCcCeEEEEECC
Confidence 86531 12457899999999999 69999999999976
No 35
>PF13423 UCH_1: Ubiquitin carboxyl-terminal hydrolase
Probab=99.95 E-value=1.9e-26 Score=254.17 Aligned_cols=279 Identities=24% Similarity=0.345 Sum_probs=227.1
Q ss_pred cccccCCCcchHHHHHHHHhCChHHHHHHHhhcccccccCCCCCCchHHHHHHHHHHHHhc-CCCCCccChHHHHHHHhh
Q 002523 340 TGLRNLGNTCFMNSAIQCLAHTPEIVDYFLGDYQKEINYENPLGLNGELALAFGDLLRKLW-APGGIPVAPRMFKLKLAN 418 (912)
Q Consensus 340 ~GL~NlGNTCYmNSvLQ~L~~~p~f~~~ll~~~~~~~~~~n~l~~~~~l~~~l~~L~~~l~-~~~~~~i~P~~~~~~l~~ 418 (912)
.||.|-+++||+||+||+|+.+|++++.++... + . ....+|+++|+-||..|. .+......+..|.++++.
T Consensus 1 ~GlEn~~~nsY~NslLQ~l~f~~~~r~~~l~h~--~----c--~~e~cL~cELgfLf~ml~~~~~g~~cq~sNflr~l~~ 72 (295)
T PF13423_consen 1 SGLENHIPNSYCNSLLQVLYFIPPLRNFLLSHL--E----C--PKEFCLLCELGFLFDMLDSKAKGINCQASNFLRALSW 72 (295)
T ss_pred CCCcCCCCcchHHHHHHHHHhCHHHHHHHHhCc--C----C--CccccHHHHHHHHHHHhhhhcCCCcChHHHHHHHHhc
Confidence 599999999999999999999999999998643 1 1 124679999999999998 777778889999999987
Q ss_pred hCCCCCCCCcCCHHHHHHHHHHHHHHHhhhcccCCccccccCCCCChHHHHHHHHHhhhcCCCccccccccEEEEEEEec
Q 002523 419 FAPQFSGYNQHDSQEFLAFLLDGLHEDLNRVKCKPYLEAKDAEGQPEEEVAEEYWRNHRARNDSIIVDLCQGQYRSMLVC 498 (912)
Q Consensus 419 ~~~~F~~~~QqDA~EfL~~LLd~L~eel~~~~~k~~~~~~d~~~~~~~~~a~e~w~~~~~~~~SiI~~lF~G~~~s~l~C 498 (912)
......-+.|+|.++|..|||+.|+.++............ .......+.|.++|+........|
T Consensus 73 ~~~a~~l~~~~~iq~~~~Fll~~l~~~~~~~~~~~~~~~~----------------~~~~~~~~~i~~~f~~~~~~~~~c 136 (295)
T PF13423_consen 73 IPEAAALGLQQDIQSLNRFLLEQLSMELLTFKPDIFHTSE----------------NSSSSPESSISQLFGTSFETTIRC 136 (295)
T ss_pred CHHHHhcchhHHHHHHHHHHHHHHhHHHHhcCcccccccc----------------cccCCCcchHHHHhCcceeeeecc
Confidence 7544555679999999999999999998765532111000 011123466999999999999999
Q ss_pred CCCCCeeeeeecceeEEecCCCCCccceEEEEEcCCCCCCCeeeEEEeCCCCCHHHHHHHHHhhcCCCCCCcEEEEEEec
Q 002523 499 PVCNKVSVTFDPLMYLSLPIPSTTMRTMTVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALSTKCFLRNHEKLLVAEIYR 578 (912)
Q Consensus 499 ~~C~~~s~~~e~F~~LsL~Ip~~~~~~~~v~~~~~d~~~~p~~~~v~v~k~~~~~~l~~~l~~~~~~~~~~~l~~~ei~~ 578 (912)
..|++.+.+.+....+.|.-|...
T Consensus 137 ~~c~~~~~~~~~~~~~~l~yp~~~-------------------------------------------------------- 160 (295)
T PF13423_consen 137 TSCGHESVKESSTLVLDLPYPPSN-------------------------------------------------------- 160 (295)
T ss_pred cccCCeEEeecceeeeeccCCCCC--------------------------------------------------------
Confidence 999999988877655555544210
Q ss_pred ceeeeeccCCcccccccCCCCcEEEEEcCCCCCCCceEEEeeecccccccccccccceeeeccceEEEcCCCCChhHHHH
Q 002523 579 SKIFRVLDEPSDLLGLIRDEDKLVAYRLPKDSETPSLVLFMHERKEESCHLGRLSLEWKIFGTPLVGRLSDLTNGSDIRK 658 (912)
Q Consensus 579 ~~i~~~~~~~~~~~~~i~~~d~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~v~~~~~~~~l~~ 658 (912)
T Consensus 161 -------------------------------------------------------------------------------- 160 (295)
T PF13423_consen 161 -------------------------------------------------------------------------------- 160 (295)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhcCCccCCCCCCCCcccccCCCCCCCcccccccccccCCCCCCCCCCCCCCCCCCCCceeEEEecCCCCcccccCC
Q 002523 659 LFLKLLDPFLMPVGDDSDFSDEAGKIDNGDSIVEDVTSSRVSDNDAVSDSSEAGDEPHLSDDFQFYRLDSIRPTEIKMNE 738 (912)
Q Consensus 659 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 738 (912)
T Consensus 161 -------------------------------------------------------------------------------- 160 (295)
T PF13423_consen 161 -------------------------------------------------------------------------------- 160 (295)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcCCCCCCeEEEEecChhhHhhhhhhhhhhhhhccccccccCCCCCccCHHHHHHHhhCcccCCCCCCCCCCCccccc
Q 002523 739 PLSISDFAKPLTIHVQWAEKMIEKYDTCLLSSLMEVCKPQLFTRMPPESVSLYKCLEAFLKEEPLGPEDMWYCPRCKKHW 818 (912)
Q Consensus 739 ~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~isL~dCL~~F~~~E~L~~~d~wyC~~Ck~~~ 818 (912)
..+++.++|+..+..|+... ..|++|++.+
T Consensus 161 -----------------------------------------------~~~tf~~~Le~sl~~e~~~~---a~C~~C~~~~ 190 (295)
T PF13423_consen 161 -----------------------------------------------SNVTFSQVLEHSLNREQQTR---AWCEKCNKYQ 190 (295)
T ss_pred -----------------------------------------------ccchHHHHHHHHHhhccccc---cccccccccc
Confidence 12478899999999888765 7999999999
Q ss_pred ceEEEEEeecCCceeEEEEeeeEEcCceecccceEEecCCCCCCCCcccccCC------CCCCccEEEEEEEEeee-cCC
Q 002523 819 QASKKLDLWRSPDILVIHLKRFSFSRYFKSKLDTYVDFPIDDLDLSNYVCCKN------SQLSNRYVLYAISNHYG-GMG 891 (912)
Q Consensus 819 ~AtKk~~l~~lP~iLiIHLKRF~~~~~~~~Ki~~~V~FPi~~LDls~~v~~~~------~~~~~~YdL~AVinH~G-~l~ 891 (912)
.+..+-.|.++|+||.|.++|.+....+..|....|.+|. .+++..++.... .....+|+|.|+|+|.| +..
T Consensus 191 ~~~~~r~i~~LPpVL~In~~~~~~~~~w~~~~~~~~~ip~-~i~~~~~~~~~~~~~~~~~~~~~~Y~L~~~V~~i~~~~~ 269 (295)
T PF13423_consen 191 PTEQRRTIRSLPPVLSINLNRYSEEEFWPKKNWLKIWIPP-SINLPHFIADDSQSDLEGESGIFKYELRSMVCHIGDSIE 269 (295)
T ss_pred ceeeeeeccCCCcEEEEEccCCCcccccccccCCceecce-eeeccccccccccccccCCCCceEEEEEEEEEEecCCCC
Confidence 9999999999999999999999998777889999999994 799999986542 33678999999999999 699
Q ss_pred CceEEEEEEeC-----CeEEEEE
Q 002523 892 GGHYTAFVDVS-----CVYSFHI 909 (912)
Q Consensus 892 gGHYtAy~k~~-----~~~~f~~ 909 (912)
+|||+||+|.+ .||.||=
T Consensus 270 ~~HlVs~vrv~~~~~~~W~lFND 292 (295)
T PF13423_consen 270 SGHLVSLVRVGPSDDSQWYLFND 292 (295)
T ss_pred CCceEEEEEcCCCCCCcEEEECc
Confidence 99999999985 6999984
No 36
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=5.5e-27 Score=256.96 Aligned_cols=244 Identities=21% Similarity=0.224 Sum_probs=177.9
Q ss_pred CeEEEE-EccCCcHHHHHHHHHhhcCCCCCceEEEEecCCccccccccccccccccccCCCCeEEEEEeecCcccCcCCc
Q 002523 209 NSLLVK-ISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQVHGFSDSVGET 287 (912)
Q Consensus 209 ~~~~i~-~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k~dG~W~~~~~~ 287 (912)
....+. ++..+|+..++.++..+.+++|++++|. + +..++.|. -.+..+++++|..+++. |++
T Consensus 13 k~y~v~~l~~d~t~~vlKaqlf~LTgV~PeRQKv~-v----KGg~a~dd-~~~~al~iKpn~~lmMm----------Gt~ 76 (473)
T KOG1872|consen 13 KKYPVETLSTDETPSVLKAQLFALTGVPPERQKVM-V----KGGLAKDD-VDWGALQIKPNETLMMM----------GTA 76 (473)
T ss_pred ccccceeccCCCchHHHHHHHHHhcCCCccceeEE-E----eccccccc-ccccccccCCCCEEEee----------ccc
Confidence 334444 7899999999999999999999999977 5 56667664 35778899999999998 444
Q ss_pred cccccccccccccccCCCccccCCCCCCCccccCCCccccCCCCCccccccccccccCCCcchHHHHHHHHhCChHHHHH
Q 002523 288 NDEMAEHYKIIDSICNGSVKINGSNDNLNSYITSSNSVRRGSGNGGVCLLGLTGLRNLGNTCFMNSAIQCLAHTPEIVDY 367 (912)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~ 367 (912)
+ +.++++.....+++++++.. .....+-++||.|+|||||||+.+|||-.+|++...
T Consensus 77 e-~~~e~p~~~~~~~ed~~e~~----------------------~~~~~~lp~gl~nlgNtcymnrtVq~lk~v~el~~~ 133 (473)
T KOG1872|consen 77 E-AGLEPPSLPPTFIEDSAEQF----------------------ASAALPLPVGLPNLGNTCYMNRTVQCLKGVPELPDA 133 (473)
T ss_pred c-ccccCcccCCcchhhhhHHH----------------------HHhhccCCccccchhHHHHhhhhhhhhhcCccCcch
Confidence 2 24444444444444443222 112245678999999999999999999999999987
Q ss_pred HHhhcccccccCCCCCCchHHHHHHHHHHHHhcCCCCCccChHHHHHHHhhhCCCCCC------CCcCCHHHHHHHHHHH
Q 002523 368 FLGDYQKEINYENPLGLNGELALAFGDLLRKLWAPGGIPVAPRMFKLKLANFAPQFSG------YNQHDSQEFLAFLLDG 441 (912)
Q Consensus 368 ll~~~~~~~~~~n~l~~~~~l~~~l~~L~~~l~~~~~~~i~P~~~~~~l~~~~~~F~~------~~QqDA~EfL~~LLd~ 441 (912)
+.. |..-......+.....+..++..+|+.|..+ .++.|..+...+.+..|+|.- +.||||.|+...++-.
T Consensus 134 ~s~-~~~~~~~~~t~~~a~~i~~~mR~~f~~~~~~--~~v~pi~llqtl~~~~Pqfa~~~~~g~~~qqda~ec~~~~m~~ 210 (473)
T KOG1872|consen 134 LSL-YKRKRGRGDTWERRRRISIETRTCFRPLCEK--GAVAPINLLQTLSSQYPQFAEWVEYGIYMQQDAAECWMEEPGM 210 (473)
T ss_pred hhc-cchhccCCchhhhhhhHHHHHHHHHHhhhcc--CCcchHHHHHHHHHHhHHHHHHhhhhhHHHHHHhHhHHHhhhh
Confidence 753 2211112222233466888899999999665 899999999999999999976 9999999999999999
Q ss_pred HHHHhhhcccCCccccccCCCCChHHHHHHHHHhhhcCCCccccccccEEEEEEEecCCCCCeeee--eecceeEEecCC
Q 002523 442 LHEDLNRVKCKPYLEAKDAEGQPEEEVAEEYWRNHRARNDSIIVDLCQGQYRSMLVCPVCNKVSVT--FDPLMYLSLPIP 519 (912)
Q Consensus 442 L~eel~~~~~k~~~~~~d~~~~~~~~~a~e~w~~~~~~~~SiI~~lF~G~~~s~l~C~~C~~~s~~--~e~F~~LsL~Ip 519 (912)
+|+.+......+ .+.+.+..+|++++..+..|.+-...... .|.|..|++.|-
T Consensus 211 l~~~~~~~~~~~-------------------------~~~~~~d~~f~~~~~~t~~~~e~e~~~~~~~~E~~~~L~c~i~ 265 (473)
T KOG1872|consen 211 LTEALTVATEAP-------------------------CLEAEAAAGFGAEFSTTMSCSEGEDEGGGAGRELVDQLKCIIN 265 (473)
T ss_pred eecccccccccc-------------------------chhHHHHHhhccccccceeeccCcccccccccccccccceEEe
Confidence 997653221110 23455788899999999999886655444 566655555543
No 37
>KOG2026 consensus Spindle pole body protein - Sad1p [Cytoskeleton]
Probab=99.91 E-value=1.5e-23 Score=223.10 Aligned_cols=155 Identities=33% Similarity=0.525 Sum_probs=129.2
Q ss_pred CccccccccccccCCCcchHHHHHHHHhCChHHHHHHHhhcccccccCCCCCCchHHHHHHHHHHHHhcCCC--CCccCh
Q 002523 332 GGVCLLGLTGLRNLGNTCFMNSAIQCLAHTPEIVDYFLGDYQKEINYENPLGLNGELALAFGDLLRKLWAPG--GIPVAP 409 (912)
Q Consensus 332 ~~~~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~ll~~~~~~~~~~n~l~~~~~l~~~l~~L~~~l~~~~--~~~i~P 409 (912)
...+.+|++||.|+-++-|.|++||+|+|.+|+|+||+.. +|+....+.+...|+.+++++|+++ ...++|
T Consensus 127 ~~tYLpG~VGLnNik~~dy~n~vl~~ls~v~PlRnyFl~~-------~n~~d~~~~lv~rl~~l~rklw~~r~fk~hvSp 199 (442)
T KOG2026|consen 127 GSTYLPGFVGLNNIKANDYANAVLQALSHVVPLRNYFLLE-------ENYFDNLTELVQRLGELIRKLWNPRNFKGHVSP 199 (442)
T ss_pred CCcceeeeeccchhhhHHHHHHHHHHHhccchhhhhhccc-------ccccchhHHHHHHHHHHHHHhcChhhhcccCCH
Confidence 4568899999999999999999999999999999999742 2233446789999999999999987 468999
Q ss_pred HHHHHHHhhhC-CCCCCCCcCCHHHHHHHHHHHHHHHhhhcccCCccccccCCCCChHHHHHHHHHhhhcCCCccccccc
Q 002523 410 RMFKLKLANFA-PQFSGYNQHDSQEFLAFLLDGLHEDLNRVKCKPYLEAKDAEGQPEEEVAEEYWRNHRARNDSIIVDLC 488 (912)
Q Consensus 410 ~~~~~~l~~~~-~~F~~~~QqDA~EfL~~LLd~L~eel~~~~~k~~~~~~d~~~~~~~~~a~e~w~~~~~~~~SiI~~lF 488 (912)
.++..++.... ..|..++|-|+-|||++||+.||.+++..++ ..|||+..|
T Consensus 200 he~lqaV~~~s~k~f~i~~q~DpveFlswllntlhs~l~~~k~----------------------------~~SIi~~~f 251 (442)
T KOG2026|consen 200 HEFLQAVMKLSKKRFRIGQQSDPVEFLSWLLNTLHSDLRGSKK----------------------------ASSIIHKSF 251 (442)
T ss_pred HHHHHHHHHHhhhheecCCCCCHHHHHHHHHHHHHHHhCCCCC----------------------------chhHhhHhh
Confidence 99999987654 4799999999999999999999999876542 358999999
Q ss_pred cEEEEEEEecCC----CCCeeeeeecceeEEecCCCC
Q 002523 489 QGQYRSMLVCPV----CNKVSVTFDPLMYLSLPIPST 521 (912)
Q Consensus 489 ~G~~~s~l~C~~----C~~~s~~~e~F~~LsL~Ip~~ 521 (912)
+|.++...+-.. -....+..-||++|+|++|+.
T Consensus 252 qG~~ri~k~~~~~~~~~~~~~i~~~~Fl~LtLDLP~~ 288 (442)
T KOG2026|consen 252 QGEVRIVKEKQGEASENENKEISVMPFLYLTLDLPPP 288 (442)
T ss_pred cceEEeeeeccccccccccceEEEEeeEEEEecCCCC
Confidence 999886554433 334566778999999999965
No 38
>KOG1871 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=8.9e-24 Score=226.02 Aligned_cols=113 Identities=25% Similarity=0.330 Sum_probs=83.6
Q ss_pred HHHHHHHhhCcccCCCCCCCCCCCcccccceEEEEEeecCCceeEEEEeeeEEc-CceecccceEEecCCCCCCCCcccc
Q 002523 790 LYKCLEAFLKEEPLGPEDMWYCPRCKKHWQASKKLDLWRSPDILVIHLKRFSFS-RYFKSKLDTYVDFPIDDLDLSNYVC 868 (912)
Q Consensus 790 L~dCL~~F~~~E~L~~~d~wyC~~Ck~~~~AtKk~~l~~lP~iLiIHLKRF~~~-~~~~~Ki~~~V~FPi~~LDls~~v~ 868 (912)
++++|+.|...|.+.+ |.-+ -+..+.|++++.|.++|++|++|||||.|. .+..+|+...++|| -.|.++.=+.
T Consensus 267 v~~ales~~~re~lp~---~st~-s~~eV~~s~q~~leklp~vlilhlkrF~ye~tgg~~k~~K~i~~~-~~l~i~~~~~ 341 (420)
T KOG1871|consen 267 VQDALESLVARESLPG---YSTK-SGQEVEASSQTTLEKLPPVLILHLKRFVYEKTGGARKLGKKIEYP-WTLKISKNCF 341 (420)
T ss_pred HHHHhhccChhhcccc---eecC-CCCeechhhhhhHhhcchhhhhhhhHHHHHhccchhhhchhhhcc-ceeeechhhh
Confidence 3344444444444432 2222 456678999999999999999999999998 56688999999999 4888776554
Q ss_pred cC-----CCCCCccEEEEEEEEeee-cCCCceEEEEEEe---CCeEEE
Q 002523 869 CK-----NSQLSNRYVLYAISNHYG-GMGGGHYTAFVDV---SCVYSF 907 (912)
Q Consensus 869 ~~-----~~~~~~~YdL~AVinH~G-~l~gGHYtAy~k~---~~~~~f 907 (912)
.+ .......|+|.||+-|.| +..+|||++-+-+ ++|+..
T Consensus 342 s~gvk~~~~~~~~~yks~~vvyhtgtsatvghYl~dv~~s~~~gw~rI 389 (420)
T KOG1871|consen 342 SQGLKIRILIATRPYKSLAVVYHTGTSATVGHYLEDVSRSVPSGWQRI 389 (420)
T ss_pred ccccchhhhccccccceEEEEEecccccccCceEEeeeecccCceeEe
Confidence 32 122446699999999999 8999999999876 456654
No 39
>PF06337 DUSP: DUSP domain; InterPro: IPR006615 Deubiquitinating enzymes (DUB) form a large family of cysteine protease that can deconjugate ubiquitin or ubiquitin-like proteins (see PDOC00271 from PROSITEDOC) from ubiquitin-conjugated proteins. All DUBs contain a catalytic domain surrounded by one or more subdomains, some of which contribute to target recognition. The ~120-residue DUSP (domain present in ubiquitin-specific proteases) domain is one of these specific subdomains. Single or tandem DUSP domains are located both N- and C-terminal to the ubiquitin carboxyl-terminal hydrolase catalytic core domain (see PDOC00750 from PROSITEDOC) []. The DUSP domain displays a tripod-like AB3 fold with a three-helix bundle and a three-stranded anti-parallel beta-sheet resembling the legs and seat of the tripod. Conserved residues are predominantly involved in hydrophobic packing interactions within the three alpha-helices. The most conserved DUSP residues, forming the PGPI motif, are flanked by two long loops that vary both in length and sequence. The PGPI motif packs against the three-helix bundle and is highly ordered []. The function of the DUSP domain is unknown but it may play a role in protein/protein interaction or substrate recognition. This domain is associated with ubiquitin carboxyl-terminal hydrolase family 2 (IPR001394 from INTERPRO, MEROPS peptidase family C19). They are a family 100 to 200 kDa peptides which includes the Ubp1 ubiquitin peptidase from yeast; others include: Mammalian ubiquitin carboxyl-terminal hydrolase 4 (USP4), Mammalian ubiquitin carboxyl-terminal hydrolase 11 (USP11), Mammalian ubiquitin carboxyl-terminal hydrolase 15 (USP15), Mammalian ubiquitin carboxyl-terminal hydrolase 20 (USP20), Mammalian ubiquitin carboxyl-terminal hydrolase 32 (USP32), Vertebrate ubiquitin carboxyl-terminal hydrolase 33 (USP33), Vertebrate ubiquitin carboxyl-terminal hydrolase 48 (USP48). ; GO: 0004221 ubiquitin thiolesterase activity; PDB: 4A3O_B 3PPA_A 3LMN_A 1W6V_A 3T9L_A 4A3P_A 3PV1_A 3JYU_B.
Probab=99.73 E-value=3.5e-18 Score=157.19 Aligned_cols=80 Identities=21% Similarity=0.332 Sum_probs=55.1
Q ss_pred cEEEEEcchhHHHHHHhhcccCCCcc-----CCCCCCCCChhhhhhhhhcccCCC-------CCCCcCCCCcCCCCeEEc
Q 002523 95 QKVYLVPYRWWKESQILLAEKVGGVL-----YEVLSNDDNTDLEILLHLKKKEGS-------VDSDCGEGGVSVREYALV 162 (912)
Q Consensus 95 ~~~yli~~~W~~~w~~~v~~~~~g~~-----~~~pg~IdNs~L~~~~~~~~~~~~-------~~~~lk~~l~e~~Dy~~V 162 (912)
+.||||+++||++|+.||........ ...||||||++|+ . ..+. ....||++|.++.||++|
T Consensus 2 ~~~ylIs~~W~~~W~~~v~~~~~~~~~~~~~~~~pGpIdN~~L~--~----~~~~~~~~~~~~~~~Lk~~l~~~~Dy~~v 75 (99)
T PF06337_consen 2 DKWYLISSKWWRQWKSYVSYDNNDNESDPDSSPRPGPIDNSDLL--D----EDNSQLQFPPPENYRLKPNLQEGVDYELV 75 (99)
T ss_dssp -EEEEEEHHHHHHHHHHHTTTTTSTTTTT-GGG---SB-GGGGE--C----CTTT---------TEE-SS--CTTTEEEE
T ss_pred CEEEEECHHHHHHHHHHhCCCCcccccccccCCCCCCEeCHHHh--C----CCCcccccchhhhhhccccccCCCCEEEE
Confidence 39999999999999999999774222 1239999999999 2 1111 135899999999999999
Q ss_pred CHHHHHHHHHHcCCCcce
Q 002523 163 PEGMWLRALKWHNDSKAA 180 (912)
Q Consensus 163 p~~~W~~l~~wYGg~p~I 180 (912)
|+++|++|.+||||||+|
T Consensus 76 ~~~~W~~l~~~Ygggp~I 93 (99)
T PF06337_consen 76 PEEVWDYLHSWYGGGPEI 93 (99)
T ss_dssp EHHHHHHHHHHH-T----
T ss_pred CHHHHHHHHHHcCCCCcE
Confidence 999999999999999999
No 40
>smart00695 DUSP Domain in ubiquitin-specific proteases.
Probab=99.68 E-value=8.5e-17 Score=143.96 Aligned_cols=77 Identities=21% Similarity=0.383 Sum_probs=66.6
Q ss_pred CCCCccEEEEEcchhHHHHHHhhcccCCCccCCCCCCCCChhhhhhhhhcccCCCCCCCcCCCCcCCCCeEEcCHHHHHH
Q 002523 90 DDDDRQKVYLVPYRWWKESQILLAEKVGGVLYEVLSNDDNTDLEILLHLKKKEGSVDSDCGEGGVSVREYALVPEGMWLR 169 (912)
Q Consensus 90 ~~~~~~~~yli~~~W~~~w~~~v~~~~~g~~~~~pg~IdNs~L~~~~~~~~~~~~~~~~lk~~l~e~~Dy~~Vp~~~W~~ 169 (912)
.+|| .||+|+.+||++|+.|+.... ...||||||++|+ . +..+..||.++.++.||++||+++|++
T Consensus 2 ~~g~--~~yiIs~~W~~~~~~~~~~~~----~~~pGpIdN~~l~--~------~~~~~~lk~~l~~~~dy~~V~~~vW~~ 67 (86)
T smart00695 2 REGD--TWYLISTRWYRQWADFVEGKD----GKDPGPIDNSGIL--C------SHGGPRLKEHLVEGEDYVLIPEELWNK 67 (86)
T ss_pred CCCC--EEEEEeHHHHHHHHHHhCCCC----CCCCCCCCcHHhc--C------CCCCcccccccccCCCEEEeCHHHHHH
Confidence 4577 999999999999999999543 5569999999999 3 122358999999999999999999999
Q ss_pred HHHHcCCCc-ce
Q 002523 170 ALKWHNDSK-AA 180 (912)
Q Consensus 170 l~~wYGg~p-~I 180 (912)
|.+||||+| +|
T Consensus 68 l~~~YGggp~~i 79 (86)
T smart00695 68 LVSWYGGGPGPI 79 (86)
T ss_pred HHHHHCCCCccc
Confidence 999999999 46
No 41
>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A.
Probab=99.51 E-value=3.6e-14 Score=124.12 Aligned_cols=83 Identities=19% Similarity=0.220 Sum_probs=67.8
Q ss_pred EEEeeecC---CCeEEEEEccCCcHHHHHHHHHhhcCCCCCceEEEEecCCccccccccccccccccccCCCCeEEEEEe
Q 002523 200 IRLSVSQE---TNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQ 276 (912)
Q Consensus 200 lkl~~~~d---~~~~~i~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k 276 (912)
|++|+..+ ++.++.+||+.+||..+.+.+|++|.| ++++|||.+++.+.+++|.+...|++||+|..||.|++|++
T Consensus 2 ~kLC~~~~~~l~~~~t~~FSk~DTI~~v~~~~rklf~i-~~E~RLW~~~~~~~~e~L~~~~~Tv~da~L~~gQ~vliE~r 80 (88)
T PF14836_consen 2 LKLCVPSNVDLQSVLTKQFSKTDTIGFVEKEMRKLFNI-QEETRLWNKYSENSYELLNNPEITVEDAGLYDGQVVLIEER 80 (88)
T ss_dssp EEEEETTE--CCEEEEEEE-TTSBHHHHHHHHHHHCT--TS-EEEEEECTTTCEEEE--TTSBTTTTT--TTEEEEEEE-
T ss_pred ceeccCCCcccccHhHhhccccChHHHHHHHHHHHhCC-CccceehhccCCcchhhhCCCCccHHHccCcCCCEEEEEee
Confidence 68888776 467899999999999999999999999 77899999999999999999999999999999999999999
Q ss_pred -ecCcccC
Q 002523 277 -VHGFSDS 283 (912)
Q Consensus 277 -~dG~W~~ 283 (912)
+||+||+
T Consensus 81 n~DGtWPr 88 (88)
T PF14836_consen 81 NEDGTWPR 88 (88)
T ss_dssp -TTS--TT
T ss_pred ccCCCCCC
Confidence 8999994
No 42
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.68 E-value=6.6e-08 Score=113.81 Aligned_cols=100 Identities=21% Similarity=0.225 Sum_probs=75.6
Q ss_pred CCCCCcccccceEEEEEeecCCceeEEEEeeeEEc--Cce--ecccceEEecCCCCCCCCcc----------cccC----
Q 002523 809 WYCPRCKKHWQASKKLDLWRSPDILVIHLKRFSFS--RYF--KSKLDTYVDFPIDDLDLSNY----------VCCK---- 870 (912)
Q Consensus 809 wyC~~Ck~~~~AtKk~~l~~lP~iLiIHLKRF~~~--~~~--~~Ki~~~V~FPi~~LDls~~----------v~~~---- 870 (912)
-.|+.|++++..+.+..+-.||++|.|...-+... .++ ..|.-..|-+| +.+.|..- ....
T Consensus 702 ~~C~~C~k~ep~~q~~~vr~LPd~L~in~~~~~~~~~~~~a~q~~~~~~vWLP-~~~~~~~~k~~~~~v~~~s~~~~~~~ 780 (1118)
T KOG1275|consen 702 AWCETCTKPEPTSQKKNVRSLPDCLSINTCLNVHELVDFWARQNKLLEDVWLP-EWFHMIISKNKAQLVSTISDLDVSPL 780 (1118)
T ss_pred cccccccCCCCcccccccccCcceeeeeeeccchhhhhhHHHhhccccccccc-hheeEEEecccceeeeeeccccCCCC
Confidence 47999999999999999999999999998888754 333 34667778888 46655431 0000
Q ss_pred ---CCCCCccEEEEEEEEeee-cCCCceEEEEEEe-----------CCeEEEEE
Q 002523 871 ---NSQLSNRYVLYAISNHYG-GMGGGHYTAFVDV-----------SCVYSFHI 909 (912)
Q Consensus 871 ---~~~~~~~YdL~AVinH~G-~l~gGHYtAy~k~-----------~~~~~f~~ 909 (912)
+...-.+|+|-|+|.|.| +-..+|.++++|. ..||-||-
T Consensus 781 ~~~d~~~~~vYeL~a~V~~I~d~~~e~~lVs~Ikv~~~~~~~~~~dsqWylFND 834 (1118)
T KOG1275|consen 781 PDYDEPSAVVYELDAMVHAIGDNENEVNLVSPIKVLRPYHVIKPDDSQWYLFND 834 (1118)
T ss_pred ccccCCceEEEEeeeEEEEeccCCCccceEEEEEccCcccccCcCcceeEEEcc
Confidence 011337899999999999 7899999999986 24888873
No 43
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=98.03 E-value=4.2e-05 Score=80.35 Aligned_cols=143 Identities=24% Similarity=0.341 Sum_probs=89.0
Q ss_pred ceeEEecCCCC---CccceEEEEEcCCCCCCCeeeEEEeCCCCCHHHHHHHHHhhcCCCC--CCcEEEEEEecceeeeec
Q 002523 511 LMYLSLPIPST---TMRTMTVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALSTKCFLRN--HEKLLVAEIYRSKIFRVL 585 (912)
Q Consensus 511 F~~LsL~Ip~~---~~~~~~v~~~~~d~~~~p~~~~v~v~k~~~~~~l~~~l~~~~~~~~--~~~l~~~ei~~~~i~~~~ 585 (912)
+++--|+||.. +.+.+.|+++..... .--.+.+.++|.+++.||++++.+.++++. ..++.+.++++++|++.+
T Consensus 3 l~YevL~i~l~ElE~kk~~kv~w~~~~~~-~~~~~~~~vpk~~tV~Dll~~l~~k~~~~~~~~~~lrl~ev~~~ki~~~~ 81 (213)
T PF14533_consen 3 LYYEVLDIPLKELENKKQFKVTWLNDGLK-EEQEYELLVPKTGTVSDLLEELQKKVGFSEEGTGKLRLWEVSNHKIYKIL 81 (213)
T ss_dssp EEEEE-SS-HHHHHSB--EEEEEE-TTS--EE-EEEE--BTT-BHHHHHHHHHTT----TT----EEEEEEETTEEEEEE
T ss_pred eEEEecCCCHHHHhCceEEEEEEECCCCc-ceeEEEEEECCCCCHHHHHHHHHHHcCCCcCCcCcEEEEEeECCEEEeec
Confidence 44555666643 456677777754332 234688999999999999999999998855 358999999999999999
Q ss_pred cCCcccccccCCCCcEEEEEcCCCC-----C--CCceEEEeeecccccccccccccceeeeccceEEEcCCCCChhHHHH
Q 002523 586 DEPSDLLGLIRDEDKLVAYRLPKDS-----E--TPSLVLFMHERKEESCHLGRLSLEWKIFGTPLVGRLSDLTNGSDIRK 658 (912)
Q Consensus 586 ~~~~~~~~~i~~~d~i~~ye~~~~~-----~--~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~v~~~~~~~~l~~ 658 (912)
. ++..+..|.+...+.+-++|... + ....+++.|...+. ...||+||++.+.+.-+-.++.+
T Consensus 82 ~-~d~~i~~l~~~~~~r~E~ip~ee~~~~~~~~~~~li~V~hf~k~~----------~~~hGiPF~f~v~~gE~f~~tK~ 150 (213)
T PF14533_consen 82 S-EDEPISSLNDYITLRIEEIPEEELNLDDESEGEKLIPVFHFHKDP----------SRTHGIPFLFVVKPGETFSDTKE 150 (213)
T ss_dssp --TTSBGGGS--TTEEEEEE--GGGSS--TT--TEEEEEEEEESSST----------T-EEEEEEEEEEETT--HHHHHH
T ss_pred C-CCCchhhccCcceeeeecCChHHhhcccccccceEEEEEEEecCc----------cccCCCCEEEEeeCCCcHHHHHH
Confidence 9 67788888666667788888643 2 34678888875432 27899999999977778888888
Q ss_pred HHHHhcC
Q 002523 659 LFLKLLD 665 (912)
Q Consensus 659 ~~~~~l~ 665 (912)
.+.+++.
T Consensus 151 Rl~~rlg 157 (213)
T PF14533_consen 151 RLQKRLG 157 (213)
T ss_dssp HHHHHH-
T ss_pred HHHHHhC
Confidence 7777663
No 44
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=96.80 E-value=0.0036 Score=53.80 Aligned_cols=62 Identities=8% Similarity=0.019 Sum_probs=52.7
Q ss_pred CCCeEEEEEccCCcHHHHHHHHHhhcCCCCCceEEEEecCCccccccccccccccccccCCCCeEEE
Q 002523 207 ETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFL 273 (912)
Q Consensus 207 d~~~~~i~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~Ill 273 (912)
.+....+.++..+||.+||.++...+++|++++||| + ....|.|...+|++++++.|..|++
T Consensus 8 ~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~Li-~----~Gk~L~D~~~~L~~~gi~~~~~l~l 69 (71)
T cd01796 8 SETTFSLDVDPDLELENFKALCEAESGIPASQQQLI-Y----NGRELVDNKRLLALYGVKDGDLVVL 69 (71)
T ss_pred CCCEEEEEECCcCCHHHHHHHHHHHhCCCHHHeEEE-E----CCeEccCCcccHHHcCCCCCCEEEE
Confidence 456688999999999999999999999999999999 4 2345666557899999999988876
No 45
>KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.77 E-value=0.0023 Score=76.29 Aligned_cols=104 Identities=19% Similarity=0.232 Sum_probs=58.2
Q ss_pred cccCCCcchHHHHHHHHhCChHHHHHHHhhcc---c-------ccccCCCCCCchHHHHHHHHHHHHhcCCCCCcc--Ch
Q 002523 342 LRNLGNTCFMNSAIQCLAHTPEIVDYFLGDYQ---K-------EINYENPLGLNGELALAFGDLLRKLWAPGGIPV--AP 409 (912)
Q Consensus 342 L~NlGNTCYmNSvLQ~L~~~p~f~~~ll~~~~---~-------~~~~~n~l~~~~~l~~~l~~L~~~l~~~~~~~i--~P 409 (912)
|.|.|||||.||+||||..+|+|+.-+...+. . ..+.............+....+... ......+ +-
T Consensus 34 l~n~gn~cy~ns~~Q~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~s~ 112 (587)
T KOG1864|consen 34 LVNTGNSCYYNSTLQALSSCPPFVSRVEQLPRLVRPKIEALKDSLNRKKTRIFDEKSLEAVTLNFSKN-SSSNESFNLSV 112 (587)
T ss_pred EeecCCchhhhhHHHHHhhccHHHHHHHHHHHhcccccccCchhhccccccchhHHHHHHHHHhhhcc-CCccccccchH
Confidence 99999999999999999999999987764321 1 1111111111111112222222221 1111122 22
Q ss_pred HHHHHHH---hhhCCCCCCCCcCCHHHHHHHHHHHHHHHh
Q 002523 410 RMFKLKL---ANFAPQFSGYNQHDSQEFLAFLLDGLHEDL 446 (912)
Q Consensus 410 ~~~~~~l---~~~~~~F~~~~QqDA~EfL~~LLd~L~eel 446 (912)
..+...+ .+....|....|+||++++.-|+-.+.+-+
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~l~~~~~~~~ 152 (587)
T KOG1864|consen 113 TQLVQSRLNNGKKYAEFNNNDQRDAHNFLLELMAMVDDVM 152 (587)
T ss_pred HHHHHHHhhhhhhhhhhhcccHhhhhhhhhhhhHHHhhhc
Confidence 2322222 233345778899999999998887776544
No 46
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=96.61 E-value=0.0074 Score=52.23 Aligned_cols=65 Identities=15% Similarity=0.157 Sum_probs=54.7
Q ss_pred cCCCeEEEEEccCCcHHHHHHHHHhhcCCCCCceEEEEecCCccccccccccccccccccCCCCeEEEEEe
Q 002523 206 QETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQ 276 (912)
Q Consensus 206 ~d~~~~~i~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k 276 (912)
.++...++.++..+|+.+|+++++..++++++++||+ + ....|.| +.+|.++++..+..|.+-++
T Consensus 8 ~~G~~~~l~v~~~~tV~~lK~~i~~~~gi~~~~q~L~-~----~G~~L~d-~~~L~~~~i~~~~~l~l~~~ 72 (74)
T cd01807 8 LQGRECSLQVSEKESVSTLKKLVSEHLNVPEEQQRLL-F----KGKALAD-DKRLSDYSIGPNAKLNLVVR 72 (74)
T ss_pred CCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEE-E----CCEECCC-CCCHHHCCCCCCCEEEEEEc
Confidence 3566788999999999999999999999999999998 5 3345666 48999999999998877643
No 47
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=96.60 E-value=0.006 Score=52.09 Aligned_cols=63 Identities=21% Similarity=0.063 Sum_probs=52.3
Q ss_pred cCCCeEEEEEccCCcHHHHHHHHHhhcCCCCCceEEEEecCCccccccccccccccccccCCCCeEEEE
Q 002523 206 QETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQ 274 (912)
Q Consensus 206 ~d~~~~~i~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE 274 (912)
..+....+.++..+|+.+|+.++...++++++++||+ +. ...|.+ +.+|.++++.+|..|.+.
T Consensus 7 ~~g~~~~i~v~~~~tv~~lK~~i~~~~gi~~~~q~L~-~~----g~~l~d-~~~L~~~~i~~g~~l~v~ 69 (71)
T cd01812 7 HGGESHDLSISSQATFGDLKKMLAPVTGVEPRDQKLI-FK----GKERDD-AETLDMSGVKDGSKVMLL 69 (71)
T ss_pred ECCEEEEEEECCCCcHHHHHHHHHHhhCCChHHeEEe-eC----CcccCc-cCcHHHcCCCCCCEEEEe
Confidence 3356678899999999999999999999999999999 42 233555 478999999999988876
No 48
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=96.55 E-value=0.0067 Score=52.61 Aligned_cols=66 Identities=15% Similarity=0.087 Sum_probs=53.6
Q ss_pred cCCCeEEEEEccCCcHHHHHHHHHhhcCCCCCceEEEEecCCccccccccccccccccccCCCCeEEEE
Q 002523 206 QETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQ 274 (912)
Q Consensus 206 ~d~~~~~i~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE 274 (912)
-.+....+.++..+|+.+|++++.+.+++|+++++|.... -+..++.| +.+|.++++.+|+.|++.
T Consensus 7 ~~g~~~~v~v~~~~Tv~~lK~~i~~~tgvp~~~QKLi~~~--~~Gk~l~D-~~~L~~~~i~~g~~i~lm 72 (74)
T cd01813 7 WGGQEYSVTTLSEDTVLDLKQFIKTLTGVLPERQKLLGLK--VKGKPAED-DVKISALKLKPNTKIMMM 72 (74)
T ss_pred ECCEEEEEEECCCCCHHHHHHHHHHHHCCCHHHEEEEeec--ccCCcCCC-CcCHHHcCCCCCCEEEEE
Confidence 4456678899999999999999999999999999999510 02335666 589999999999988875
No 49
>PTZ00044 ubiquitin; Provisional
Probab=96.54 E-value=0.0099 Score=51.58 Aligned_cols=65 Identities=12% Similarity=0.084 Sum_probs=55.3
Q ss_pred cCCCeEEEEEccCCcHHHHHHHHHhhcCCCCCceEEEEecCCccccccccccccccccccCCCCeEEEEEe
Q 002523 206 QETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQ 276 (912)
Q Consensus 206 ~d~~~~~i~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k 276 (912)
.++...++.++..+||.+|+.++....++|++++||+ +. ...|.| ..+|.+.++..+..|.+-++
T Consensus 8 ~~G~~~~l~v~~~~tv~~lK~~i~~~~gi~~~~q~L~-~~----g~~L~d-~~~l~~~~i~~~~~i~l~~~ 72 (76)
T PTZ00044 8 LTGKKQSFNFEPDNTVQQVKMALQEKEGIDVKQIRLI-YS----GKQMSD-DLKLSDYKVVPGSTIHMVLQ 72 (76)
T ss_pred CCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEE-EC----CEEccC-CCcHHHcCCCCCCEEEEEEE
Confidence 4567788999999999999999999999999999999 63 334665 47899999999998888766
No 50
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=96.34 E-value=0.008 Score=53.89 Aligned_cols=62 Identities=11% Similarity=0.111 Sum_probs=54.6
Q ss_pred eEEEEEccCCcHHHHHHHHHhhcCCCCCceEEEEecCCccccccccccccccccccCCCCeEEEEEe
Q 002523 210 SLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQ 276 (912)
Q Consensus 210 ~~~i~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k 276 (912)
.+++.++..+|+.+||.+|.+.|++++++++||.. +. .|.|...||.+.++.++..|++-+.
T Consensus 16 ~~~L~V~~~~TVg~LK~lImQ~f~V~P~dQkL~~d-G~----~L~DDsrTLssyGv~sgSvl~Llid 77 (107)
T cd01795 16 EKALLVSANQTLKELKIQIMHAFSVAPFDQNLSID-GK----ILSDDCATLGTLGVIPESVILLKAD 77 (107)
T ss_pred CceEEeCccccHHHHHHHHHHHhcCCcccceeeec-Cc----eeccCCccHHhcCCCCCCEEEEEec
Confidence 57788999999999999999999999999999944 33 6778789999999999999988753
No 51
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=96.25 E-value=0.018 Score=49.81 Aligned_cols=66 Identities=18% Similarity=0.315 Sum_probs=55.6
Q ss_pred ecCCCeEEEEEccCCcHHHHHHHHHhhcCCCCCceEEEEecCCccccccccccccccccccCCCCeEEEEEe
Q 002523 205 SQETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQ 276 (912)
Q Consensus 205 ~~d~~~~~i~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k 276 (912)
..++...++.++..+||.+|++++....++|+++++|+ + ....|.|. .+|.+++++++..+.+..+
T Consensus 5 ~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~-~----~G~~L~D~-~tL~~~~i~~~~tl~l~~~ 70 (74)
T cd01810 5 NDKGRSSIYEVQLTQTVATLKQQVSQRERVQADQFWLS-F----EGRPMEDE-HPLGEYGLKPGCTVFMNLR 70 (74)
T ss_pred CCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEE-E----CCEECCCC-CCHHHcCCCCCCEEEEEEE
Confidence 34566788999999999999999999999999999998 4 34456664 8999999999998888765
No 52
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=96.23 E-value=0.016 Score=49.64 Aligned_cols=63 Identities=14% Similarity=0.039 Sum_probs=52.6
Q ss_pred cCCCeEEEEEccCCcHHHHHHHHHhhcCCCCCceEEEEecCCccccccccccccccccccCCCCeEEEE
Q 002523 206 QETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQ 274 (912)
Q Consensus 206 ~d~~~~~i~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE 274 (912)
..+...++.++..+||.+||.++....++|++++||| + ....|+|. .++.++++..+.+|-+-
T Consensus 6 ~~G~~~~l~v~~~~TV~~lK~~I~~~~gi~~~~q~Li-~----~G~~L~D~-~~l~~~~i~~~~tv~~~ 68 (70)
T cd01794 6 STGKDVKLSVSSKDTVGQLKKQLQAAEGVDPCCQRWF-F----SGKLLTDK-TRLQETKIQKDYVVQVI 68 (70)
T ss_pred CCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEE-E----CCeECCCC-CCHHHcCCCCCCEEEEE
Confidence 4457788999999999999999999999999999999 5 34457664 88999999988877654
No 53
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=96.21 E-value=0.029 Score=50.14 Aligned_cols=66 Identities=9% Similarity=0.008 Sum_probs=53.5
Q ss_pred CeEEEEEccCCcHHHHHHHHHhhcCCCCCceEEEEe--cCCccccccccccccccccccCCCCeEEEE
Q 002523 209 NSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDF--SGQTTQFLMNDRVTMSDDFSAKPGEEVFLQ 274 (912)
Q Consensus 209 ~~~~i~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~--~~~~~~~lL~d~~~tL~d~~l~~~q~IllE 274 (912)
......+++..|+.+|+.++..++|++++.+||.-+ .+......+.++.++|...++.+|..|.+.
T Consensus 14 ~~~ekr~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~dg~~i~V~ 81 (87)
T PF14560_consen 14 RSVEKRFPKSITVSELKQKLEKLTGIPPSDMRLQLKSDKDDSKIEELDDDDATLGSYGIKDGMRIHVV 81 (87)
T ss_dssp SEEEEEEETTSBHHHHHHHHHHHHTS-TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-STTEEEEEE
T ss_pred eeEEEEcCCCCCHHHHHHHHHHHhCCCcccEEEEEEecCCCccccccCCCccEeecCCCCCCCEEEEE
Confidence 378899999999999999999999999999888866 233444556677799999999999888776
No 54
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=96.19 E-value=0.021 Score=48.46 Aligned_cols=64 Identities=14% Similarity=0.227 Sum_probs=53.6
Q ss_pred CCCeEEEEEccCCcHHHHHHHHHhhcCCCCCceEEEEecCCccccccccccccccccccCCCCeEEEEEe
Q 002523 207 ETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQ 276 (912)
Q Consensus 207 d~~~~~i~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k 276 (912)
++..+.+.++..+||.+|++++....++|+++++|. + ....|.| +.+|.++++.+|..|.+-++
T Consensus 4 ~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~~~L~-~----~G~~L~d-~~tL~~~~i~~~~~I~l~~k 67 (69)
T PF00240_consen 4 SGKTFTLEVDPDDTVADLKQKIAEETGIPPEQQRLI-Y----NGKELDD-DKTLSDYGIKDGSTIHLVIK 67 (69)
T ss_dssp TSEEEEEEEETTSBHHHHHHHHHHHHTSTGGGEEEE-E----TTEEEST-TSBTGGGTTSTTEEEEEEES
T ss_pred CCcEEEEEECCCCCHHHhhhhcccccccccccceee-e----eeecccC-cCcHHHcCCCCCCEEEEEEe
Confidence 445788999999999999999999999999999998 4 3445644 58999999999998877643
No 55
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=96.17 E-value=0.024 Score=48.94 Aligned_cols=65 Identities=17% Similarity=0.142 Sum_probs=54.4
Q ss_pred cCCCeEEEEEccCCcHHHHHHHHHhhcCCCCCceEEEEecCCccccccccccccccccccCCCCeEEEEEe
Q 002523 206 QETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQ 276 (912)
Q Consensus 206 ~d~~~~~i~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k 276 (912)
.++....+.++...|+.+|++++....++|++++||+ +. ...|.+ +.+|.++++..|..|-+-.+
T Consensus 8 ~~g~~~~~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~-~~----g~~L~d-~~tl~~~~i~~g~~i~l~~~ 72 (76)
T cd01806 8 LTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLI-YS----GKQMND-DKTAADYKLEGGSVLHLVLA 72 (76)
T ss_pred CCCCEEEEEECCCCCHHHHHHHHhHhhCCChhhEEEE-EC----CeEccC-CCCHHHcCCCCCCEEEEEEE
Confidence 3456678899999999999999999999999999999 53 334555 47899999999998877765
No 56
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=96.11 E-value=0.02 Score=49.81 Aligned_cols=61 Identities=11% Similarity=0.095 Sum_probs=49.1
Q ss_pred CCeEEEEEccCCcHHHHHHHHHhhcCCCCCceEEEEecCCccccccccccccccccccC-CCCeEEEE
Q 002523 208 TNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAK-PGEEVFLQ 274 (912)
Q Consensus 208 ~~~~~i~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~-~~q~IllE 274 (912)
+...++.++..+||.+||.++...+++|++++|| +.+. .|.+...+|.++++. .|.++.+-
T Consensus 12 ~~t~~l~v~~~~TV~~lK~kI~~~~gip~~~QrL--~~G~----~L~dD~~tL~~ygi~~~g~~~~l~ 73 (75)
T cd01799 12 TVTIWLTVRPDMTVAQLKDKVFLDYGFPPAVQRW--VIGQ----RLARDQETLYSHGIRTNGDSAFLY 73 (75)
T ss_pred CCeEEEEECCCCcHHHHHHHHHHHHCcCHHHEEE--EcCC----eeCCCcCCHHHcCCCCCCCEEEEE
Confidence 4567899999999999999999999999999999 4322 254455899999998 56776654
No 57
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=96.01 E-value=0.021 Score=49.78 Aligned_cols=63 Identities=16% Similarity=0.151 Sum_probs=53.9
Q ss_pred CCeEEEEEccCCcHHHHHHHHHhhcCCCCCceEEEEecCCccccccccccccccccccCCCCeEEEEEe
Q 002523 208 TNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQ 276 (912)
Q Consensus 208 ~~~~~i~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k 276 (912)
+..+++.++..+||.+|+.++....++|+++++|+ +.+ ..|+|. .+|.++++.++..|.+-.+
T Consensus 7 g~~~~l~v~~~~TV~~lK~~i~~~~gip~~~q~L~-~~G----~~L~d~-~tL~~~~i~~g~~l~v~~~ 69 (76)
T cd01800 7 GQMLNFTLQLSDPVSVLKVKIHEETGMPAGKQKLQ-YEG----IFIKDS-NSLAYYNLANGTIIHLQLK 69 (76)
T ss_pred CeEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEE-ECC----EEcCCC-CcHHHcCCCCCCEEEEEEe
Confidence 35677889999999999999999999999999999 533 356664 8999999999999988876
No 58
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=95.96 E-value=0.029 Score=48.42 Aligned_cols=66 Identities=9% Similarity=0.123 Sum_probs=55.1
Q ss_pred cCCCeEEEEEccCCcHHHHHHHHHhhcCCCCCceEEEEecCCccccccccccccccccccCCCCeEEEEEee
Q 002523 206 QETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQV 277 (912)
Q Consensus 206 ~d~~~~~i~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k~ 277 (912)
.++....+.++..+|+.+|++++.+.+++|++++||| +. ...|.|. .+|.++++..+..|.+-++.
T Consensus 8 ~~g~~~~~~v~~~~tV~~lK~~i~~~~g~~~~~q~L~-~~----g~~L~d~-~~L~~~~i~~~~~i~l~~~~ 73 (76)
T cd01803 8 LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI-FA----GKQLEDG-RTLSDYNIQKESTLHLVLRL 73 (76)
T ss_pred CCCCEEEEEECCcCcHHHHHHHHHHHhCCCHHHeEEE-EC----CEECCCC-CcHHHcCCCCCCEEEEEEEc
Confidence 3456678999999999999999999999999999999 53 3346654 78999999999988887663
No 59
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=95.93 E-value=0.031 Score=48.32 Aligned_cols=62 Identities=8% Similarity=0.005 Sum_probs=52.5
Q ss_pred CeEEEEEccCCcHHHHHHHHHhhcCCCCCceEEEEecCCccccccccccccccccccCCCCeEEEEEe
Q 002523 209 NSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQ 276 (912)
Q Consensus 209 ~~~~i~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k 276 (912)
...++.+...+||.+++.++....++|++++||+ +. ...|.|. .+|.+++++.+..|-+-++
T Consensus 9 ~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~Li-~~----Gk~L~D~-~tL~~~~i~~~~tl~l~~~ 70 (74)
T cd01793 9 NTHTLEVTGQETVSDIKAHVAGLEGIDVEDQVLL-LA----GVPLEDD-ATLGQCGVEELCTLEVAGR 70 (74)
T ss_pred CEEEEEECCcCcHHHHHHHHHhhhCCCHHHEEEE-EC----CeECCCC-CCHHHcCCCCCCEEEEEEe
Confidence 4678899999999999999999999999999999 42 3456664 8999999999988866655
No 60
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=95.90 E-value=0.036 Score=48.14 Aligned_cols=64 Identities=9% Similarity=0.186 Sum_probs=53.8
Q ss_pred CCCeEEEEEccCCcHHHHHHHHHhhcCC--CCCceEEEEecCCccccccccccccccccccCCCCeEEEEEe
Q 002523 207 ETNSLLVKISLEDNKVDLYKRACNLFIS--VSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQ 276 (912)
Q Consensus 207 d~~~~~i~~Sk~~ti~eL~~~v~~lf~i--~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k 276 (912)
.+...++.++..+|+.+|++++....++ +++++||+ + ....|.|. .+|.++++..|..|++.++
T Consensus 9 ~g~~~~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~-~----~G~~L~d~-~~L~~~~i~~~~~i~~~~~ 74 (77)
T cd01805 9 KQQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLI-Y----SGKILKDD-TTLEEYKIDEKDFVVVMVS 74 (77)
T ss_pred CCCEEEEEECCCCcHHHHHHHHHHhhCCCCChhHeEEE-E----CCEEccCC-CCHHHcCCCCCCEEEEEEe
Confidence 4566789999999999999999999999 89999998 4 24466654 7999999999998887754
No 61
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=95.85 E-value=0.03 Score=47.78 Aligned_cols=63 Identities=8% Similarity=0.045 Sum_probs=52.5
Q ss_pred cCCCeEEEEEccCCcHHHHHHHHHhhcCCCCCceEEEEecCCccccccccccccccccccCCCCeEEEE
Q 002523 206 QETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQ 274 (912)
Q Consensus 206 ~d~~~~~i~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE 274 (912)
.++...++.++..+|+.++++++....++|.+++||+ + ....|.| +.+|.++++..+..+-+-
T Consensus 6 ~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~Li-~----~G~~L~d-~~~l~~~~i~~~stl~l~ 68 (70)
T cd01798 6 NTGHTFPVEVDPDTDIKQLKEVVAKRQGVPPDQLRVI-F----AGKELRN-TTTIQECDLGQQSILHAV 68 (70)
T ss_pred CCCCEEEEEECCCChHHHHHHHHHHHHCCCHHHeEEE-E----CCeECCC-CCcHHHcCCCCCCEEEEE
Confidence 4566788999999999999999999999999999998 5 2344666 489999999999887553
No 62
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=95.80 E-value=0.033 Score=48.77 Aligned_cols=62 Identities=16% Similarity=0.145 Sum_probs=51.9
Q ss_pred EEEE-EccCCcHHHHHHHHHhhcCCCCCceEEEEecCCccccccccccccccccccCCCCeEEEEEeec
Q 002523 211 LLVK-ISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQVH 278 (912)
Q Consensus 211 ~~i~-~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k~d 278 (912)
.++. +...+||.+|++++.+..+++++++||+ | ....|.| +.+|.+.++..+..|.+.++.|
T Consensus 14 ~~l~~v~~~~TV~~lK~~i~~~~gi~~~~QrLi-~----~Gk~L~D-~~tL~~y~i~~~~~i~l~~~~~ 76 (78)
T cd01797 14 RTVDSLSRLTKVEELREKIQELFNVEPECQRLF-Y----RGKQMED-GHTLFDYNVGLNDIIQLLVRQD 76 (78)
T ss_pred EEeeccCCcCcHHHHHHHHHHHhCCCHHHeEEE-e----CCEECCC-CCCHHHcCCCCCCEEEEEEecC
Confidence 4563 6789999999999999999999999999 5 3445666 4899999999999999987743
No 63
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=95.68 E-value=0.061 Score=47.08 Aligned_cols=63 Identities=13% Similarity=0.122 Sum_probs=51.8
Q ss_pred CCCeEEEEEccCCcHHHHHHHHHhhcCCCCCceEEEEecCCccccccccccccccccccCCCCeEEEEEe
Q 002523 207 ETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQ 276 (912)
Q Consensus 207 d~~~~~i~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k 276 (912)
.+...++.++..+|+.+|++++.+.++++++++||- +. ...|.|. +|.++++.+|..|.+-..
T Consensus 10 ~G~~~~l~v~~~~TV~~LK~~I~~~~~~~~~~qrL~-~~----Gk~L~d~--~L~~~gi~~~~~i~l~~~ 72 (78)
T cd01804 10 TGTRFDLSVPPDETVEGLKKRISQRLKVPKERLALL-HR----ETRLSSG--KLQDLGLGDGSKLTLVPT 72 (78)
T ss_pred CCCEEEEEECCcCHHHHHHHHHHHHhCCChHHEEEE-EC----CcCCCCC--cHHHcCCCCCCEEEEEee
Confidence 345688999999999999999999999999999997 42 3356664 799999999998877643
No 64
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=95.59 E-value=0.069 Score=49.42 Aligned_cols=66 Identities=11% Similarity=0.109 Sum_probs=55.5
Q ss_pred cCCCeEEEEEccCCcHHHHHHHHHhhcCCCCCceEEEEecCCccccccccccccccccccCCCCeEEEEEee
Q 002523 206 QETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQV 277 (912)
Q Consensus 206 ~d~~~~~i~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k~ 277 (912)
..+...++.++..+||.+|+.++.+..+++.+++||+ + ....|.|. .+|.+.++..+..|-+-++.
T Consensus 35 l~G~~~~leV~~~~TV~~lK~kI~~~~gip~~~QrLi-~----~Gk~L~D~-~tL~dy~I~~~stL~l~~~l 100 (103)
T cd01802 35 LTGTCFELRVSPFETVISVKAKIQRLEGIPVAQQHLI-W----NNMELEDE-YCLNDYNISEGCTLKLVLAM 100 (103)
T ss_pred CCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEE-E----CCEECCCC-CcHHHcCCCCCCEEEEEEec
Confidence 3456788999999999999999999999999999999 4 23446664 89999999999988887663
No 65
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=95.57 E-value=0.048 Score=46.49 Aligned_cols=63 Identities=13% Similarity=0.167 Sum_probs=52.7
Q ss_pred cCCCeEEEEEccCCcHHHHHHHHHhhcCCCCCceEEEEecCCccccccccccccccccccCCCCeEEEE
Q 002523 206 QETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQ 274 (912)
Q Consensus 206 ~d~~~~~i~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE 274 (912)
.++...++.++..+|+.+|++++.+..+++++.+||+ +. ..+|.+ +.+|.++++.+|..+.+-
T Consensus 8 ~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~-~~----g~~L~d-~~~L~~~~i~~~~~l~l~ 70 (72)
T cd01809 8 LDSQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLI-YS----GRVLKD-DETLSEYKVEDGHTIHLV 70 (72)
T ss_pred CCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEE-EC----CEECCC-cCcHHHCCCCCCCEEEEE
Confidence 4556788999999999999999999999999999999 42 345666 479999999999877653
No 66
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=95.36 E-value=0.055 Score=47.57 Aligned_cols=67 Identities=15% Similarity=0.109 Sum_probs=53.7
Q ss_pred cCCCeEEEEEccCCcHHHHHHHHHhhcCCCCCceEEEEecCCccccccccccccccccccCCCCeEEEEEe
Q 002523 206 QETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQ 276 (912)
Q Consensus 206 ~d~~~~~i~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k 276 (912)
.++....+.+...+||.+|++++.+.++++++++||-..+ ....|.|. .+|.++++..|..|.+-++
T Consensus 10 ~~G~~~~~~v~~~~TV~~lK~~I~~~~~i~~~~qrL~~~~---~G~~L~D~-~tL~~~gi~~gs~l~l~~~ 76 (80)
T cd01792 10 LGGNEFLVSLRDSMTVSELKQQIAQKIGVPAFQQRLAHLD---SREVLQDG-VPLVSQGLGPGSTVLLVVQ 76 (80)
T ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhCCCHHHEEEEecc---CCCCCCCC-CCHHHcCCCCCCEEEEEEE
Confidence 3456677889999999999999999999999999994222 23456664 7899999999998877754
No 67
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=95.23 E-value=0.096 Score=45.27 Aligned_cols=62 Identities=18% Similarity=0.087 Sum_probs=52.0
Q ss_pred CCCeEEEEEccCCcHHHHHHHHHhhcCCCCCceEEEEecCCccccccccccccccccccCCCCeEEEE
Q 002523 207 ETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQ 274 (912)
Q Consensus 207 d~~~~~i~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE 274 (912)
.+....+.++..+||.+|++++.+.++++++++||- +. ..+|.|. .+|.++++.+|..|.+-
T Consensus 10 ~Gk~~~~~v~~~~TV~~LK~~I~~~~~~~~~~qrLi-~~----Gk~L~D~-~tL~~ygi~~~stv~l~ 71 (73)
T cd01791 10 LGKKVRVKCNPDDTIGDLKKLIAAQTGTRPEKIVLK-KW----YTIFKDH-ISLGDYEIHDGMNLELY 71 (73)
T ss_pred CCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEE-eC----CcCCCCC-CCHHHcCCCCCCEEEEE
Confidence 356678899999999999999999999999999997 43 3457664 78999999999888764
No 68
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=95.23 E-value=0.066 Score=45.83 Aligned_cols=58 Identities=19% Similarity=0.231 Sum_probs=48.2
Q ss_pred EEEEEccCCcHHHHHHHHHhhcCCCCCceEEEEecCCccccccccccccccccccCCCCeEEEE
Q 002523 211 LLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQ 274 (912)
Q Consensus 211 ~~i~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE 274 (912)
.++.+...+|+.+|++++.+..+++.+++||+ + ....|.|. .+|.++++.++..|.+-
T Consensus 12 ~~l~v~~~~TV~~lK~~I~~~~~i~~~~~~Li-~----~Gk~L~d~-~tL~~~~i~~~stl~l~ 69 (71)
T cd01808 12 EEIEIAEDASVKDFKEAVSKKFKANQEQLVLI-F----AGKILKDT-DTLTQHNIKDGLTVHLV 69 (71)
T ss_pred EEEEECCCChHHHHHHHHHHHhCCCHHHEEEE-E----CCeEcCCC-CcHHHcCCCCCCEEEEE
Confidence 47889999999999999999999999999997 4 23356654 78999999999887653
No 69
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=94.99 E-value=0.15 Score=45.64 Aligned_cols=72 Identities=18% Similarity=0.289 Sum_probs=57.1
Q ss_pred eEEEEeeecCCCeEEEEEccCCcHHHHHHHHHhhcCCCCCceEEEEecCCccccccccccccccccccCCCCeEEEEEe
Q 002523 198 LQIRLSVSQETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQ 276 (912)
Q Consensus 198 l~lkl~~~~d~~~~~i~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k 276 (912)
+.|++. ..++..+++.+.+.+++..|++..|+..+++++++|++ +. ...|.+ +.|+.+++++.+..|-+-++
T Consensus 12 i~I~v~-~~~g~~~~~~v~~~~~l~~l~~~y~~~~gi~~~~~rf~-f~----G~~L~~-~~T~~~l~m~d~d~I~v~l~ 83 (87)
T cd01763 12 INLKVK-GQDGNEVFFKIKRSTPLKKLMEAYCQRQGLSMNSVRFL-FD----GQRIRD-NQTPDDLGMEDGDEIEVMLE 83 (87)
T ss_pred EEEEEE-CCCCCEEEEEEcCCCHHHHHHHHHHHHhCCCccceEEE-EC----CeECCC-CCCHHHcCCCCCCEEEEEEe
Confidence 344442 34567889999999999999999999999999999999 42 334544 47999999999998866654
No 70
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=94.62 E-value=0.23 Score=44.20 Aligned_cols=66 Identities=14% Similarity=0.101 Sum_probs=53.2
Q ss_pred CeEEEEEccCCcHHHHHHHHHhhcCCCCCceEEEEecCCccc-cccccccccccccccCCCCeEEEE
Q 002523 209 NSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQ-FLMNDRVTMSDDFSAKPGEEVFLQ 274 (912)
Q Consensus 209 ~~~~i~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~-~lL~d~~~tL~d~~l~~~q~IllE 274 (912)
-.....++...|+.+|++++...+|+++..+||.-+.+.... ..|.++.++|...++++|..|.+.
T Consensus 13 ~~~ekr~~~~~Tv~~lK~kl~~~~G~~~~~mrL~l~~~~~~~~~~l~~d~~~L~~y~~~dg~~IhVv 79 (84)
T cd01789 13 FSFEKKYSRGLTIAELKKKLELVVGTPASSMRLQLFDGDDKLVSKLDDDDALLGSYPVDDGCRIHVI 79 (84)
T ss_pred eeeeEecCCCCcHHHHHHHHHHHHCCCccceEEEEEcCCCCeEeecCCCccEeeeccCCCCCEEEEE
Confidence 345677999999999999999999999999999755544222 236566789999999999988776
No 71
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=93.73 E-value=0.21 Score=41.87 Aligned_cols=62 Identities=15% Similarity=0.232 Sum_probs=49.9
Q ss_pred CCCeEEEEEccCCcHHHHHHHHHhhcCCCCCceEEEEecCCccccccccccccccccccCCCCeEEEE
Q 002523 207 ETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQ 274 (912)
Q Consensus 207 d~~~~~i~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE 274 (912)
++....+.+...+|+.+|++++.+.+++++++++|+ +.+ ..|++ ..+|.++++.++..|.+-
T Consensus 6 ~~~~~~~~~~~~~ti~~lK~~i~~~~~~~~~~~~l~-~~g----~~l~d-~~~l~~~~v~~~~~i~v~ 67 (69)
T cd01769 6 TGKTFELEVSPDDTVAELKAKIAAKEGVPPEQQRLI-YAG----KILKD-DKTLSDYGIQDGSTLHLV 67 (69)
T ss_pred CCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEE-ECC----cCCCC-cCCHHHCCCCCCCEEEEE
Confidence 355667888899999999999999999999999996 322 34555 478999999998877764
No 72
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=93.70 E-value=0.17 Score=41.74 Aligned_cols=54 Identities=15% Similarity=0.260 Sum_probs=44.5
Q ss_pred CeEEEEEccCCcHHHHHHHHHhhcCCCCCceEEEEecCCccccccccccccccccccCCC
Q 002523 209 NSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPG 268 (912)
Q Consensus 209 ~~~~i~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~ 268 (912)
....+.++...|+.+|+.++...+++++++++|+ +.+ ..|.+ +.+|.++++.+|
T Consensus 10 ~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~~~L~-~~g----~~L~d-~~tL~~~~i~~~ 63 (64)
T smart00213 10 GTITLEVKPSDTVSELKEKIAELTGIPVEQQRLI-YKG----KVLED-DRTLADYNIQDG 63 (64)
T ss_pred ceEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEE-ECC----EECCC-CCCHHHcCCcCC
Confidence 4678889999999999999999999999999998 422 34655 489999998765
No 73
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=92.21 E-value=0.28 Score=43.19 Aligned_cols=64 Identities=9% Similarity=0.100 Sum_probs=38.0
Q ss_pred CeEEEEEccCCcHHHHHHHHHhhcCCCCCceEEEEecCCcccccc-ccccccccccccCCCCeEEEE
Q 002523 209 NSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLM-NDRVTMSDDFSAKPGEEVFLQ 274 (912)
Q Consensus 209 ~~~~i~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL-~d~~~tL~d~~l~~~q~IllE 274 (912)
-...+.++..+|+.+|++++.+.++++.+.+.|+.- .+....+ .+..++|.+++|+.|..|.+.
T Consensus 14 G~~Rie~~~~~t~~~L~~kI~~~l~~~~~~~~L~~~--~~~~~~l~s~~~~tl~~lglkHGdmlyL~ 78 (80)
T PF11543_consen 14 GMKRIEVSPSSTLSDLKEKISEQLSIPDSSQSLSKD--RNNKEELKSSDSKTLSSLGLKHGDMLYLK 78 (80)
T ss_dssp EEEEEEE-TTSBHHHHHHHHHHHS---TTT---BSS--GGGGGCSSS-TT-CCCCT---TT-EEE--
T ss_pred CCEEEEcCCcccHHHHHHHHHHHcCCCCcceEEEec--CCCCcccccCCcCCHHHcCCCCccEEEEe
Confidence 456778999999999999999999999888777633 2333333 455799999999999988764
No 74
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=92.18 E-value=0.52 Score=40.23 Aligned_cols=63 Identities=14% Similarity=0.219 Sum_probs=50.0
Q ss_pred ecCCCeEEEEEccCCcHHHHHHHHHhhcCCCC-CceEEEEecCCccccccccccccccccccCCCCeEEE
Q 002523 205 SQETNSLLVKISLEDNKVDLYKRACNLFISVS-EMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFL 273 (912)
Q Consensus 205 ~~d~~~~~i~~Sk~~ti~eL~~~v~~lf~i~~-e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~Ill 273 (912)
..++..+.+.+.+..++..|++..|+..+++. ++++++ +. ...|.. ++|+.+++++.|..|-+
T Consensus 7 ~~~~~~~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~-fd----G~~L~~-~~T~~~~~ied~d~Idv 70 (72)
T PF11976_consen 7 SQDGKEIKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLI-FD----GKRLDP-NDTPEDLGIEDGDTIDV 70 (72)
T ss_dssp ETTSEEEEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEE-ET----TEEE-T-TSCHHHHT-STTEEEEE
T ss_pred eCCCCEEEEEECCCCcHHHHHHHHHHhhCCCccceEEEE-EC----CEEcCC-CCCHHHCCCCCCCEEEE
Confidence 34566889999999999999999999999999 899998 53 334544 58999999998887543
No 75
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=92.11 E-value=0.94 Score=39.79 Aligned_cols=67 Identities=13% Similarity=0.144 Sum_probs=53.2
Q ss_pred ecCCCeEEEEEccCCcHHHHHHHHHhhcCCCCCc-eEEEEecCCccccccccc-cccccccccCCCCeEEEE
Q 002523 205 SQETNSLLVKISLEDNKVDLYKRACNLFISVSEM-LYIWDFSGQTTQFLMNDR-VTMSDDFSAKPGEEVFLQ 274 (912)
Q Consensus 205 ~~d~~~~~i~~Sk~~ti~eL~~~v~~lf~i~~e~-~RLW~~~~~~~~~lL~d~-~~tL~d~~l~~~q~IllE 274 (912)
.+|+..+...|...+|+.+|+..+......+... ++|..-+.. ..+.+. ++||.++++.++..++||
T Consensus 13 lpdG~~l~~~F~~~~tl~~l~~~v~~~~~~~~~~~f~L~~~~Pr---~~l~~~~~~tl~e~~l~p~~~l~v~ 81 (82)
T PF00789_consen 13 LPDGSRLQRRFPKSDTLQDLYDFVESQLFSPEESDFELITAFPR---RELTDEDSKTLEEAGLLPSATLIVE 81 (82)
T ss_dssp ETTSTEEEEEEETTSBHHHHHHHHHHHHHCTTTSSEEEEESSST---EECCSTTTSBTCCCTTSSCEEEEEE
T ss_pred CCCCCEEEEEECCcchHHHHHHHHHHhcCCCCCccEEEEeCCCC---cCCCccccccHHHhcCCCCeEEEEE
Confidence 4888899999999999999999998887777654 888754432 222222 489999999999999987
No 76
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=91.78 E-value=0.4 Score=54.64 Aligned_cols=65 Identities=6% Similarity=0.098 Sum_probs=55.5
Q ss_pred cCCCeEEEEEccCCcHHHHHHHHHhhcC---CCCCceEEEEecCCccccccccccccccccccCCCCeEEEEEe
Q 002523 206 QETNSLLVKISLEDNKVDLYKRACNLFI---SVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQ 276 (912)
Q Consensus 206 ~d~~~~~i~~Sk~~ti~eL~~~v~~lf~---i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k 276 (912)
-++..+.+.++..+||.+||+++....+ ++.+++||+ | ...+|+|. ++|.++++..+..|++.+.
T Consensus 8 l~g~~~~IeV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLI-y----~GkiL~Dd-~tL~dy~I~e~~~Ivvmv~ 75 (378)
T TIGR00601 8 LQQQKFKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLI-Y----SGKILSDD-KTVREYKIKEKDFVVVMVS 75 (378)
T ss_pred CCCCEEEEEeCCcChHHHHHHHHHHhhCCCCCChhHeEEE-E----CCEECCCC-CcHHHcCCCCCCEEEEEec
Confidence 3456788999999999999999999998 999999999 5 34467664 7999999999999988876
No 77
>cd01788 ElonginB Ubiquitin-like domain of Elongin B. Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.
Probab=89.74 E-value=1.3 Score=41.16 Aligned_cols=71 Identities=10% Similarity=0.091 Sum_probs=54.1
Q ss_pred cCCCeEEEEEccCCcHHHHHHHHHhhcCCCCCceEEEEecCCcccccccccccccccccc-------CCCCeEEEEEe-e
Q 002523 206 QETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSA-------KPGEEVFLQLQ-V 277 (912)
Q Consensus 206 ~d~~~~~i~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l-------~~~q~IllE~k-~ 277 (912)
++...+........|+-+|++.+--+.+.|++++||| . ...+|+| .+||.|+|+ +..-.+-+-++ .
T Consensus 9 R~KTTiF~dakes~tVlelK~~iegI~k~pp~dQrL~-k----d~qvLeD-~kTL~d~g~t~~~akaq~pA~vgLa~r~~ 82 (119)
T cd01788 9 RHKTTIFTDAKESTTVYELKRIVEGILKRPPEDQRLY-K----DDQLLDD-GKTLGDCGFTSQTARPQAPATVGLAFRSS 82 (119)
T ss_pred ecceEEEeecCCcccHHHHHHHHHHHhcCChhHheee-c----Cceeecc-cccHHHcCccccccccCCCCeEEEEEecC
Confidence 3344455666788999999999999999999999999 3 2346766 599999999 44557767777 5
Q ss_pred cCccc
Q 002523 278 HGFSD 282 (912)
Q Consensus 278 dG~W~ 282 (912)
+|.+.
T Consensus 83 d~~fE 87 (119)
T cd01788 83 DDTFE 87 (119)
T ss_pred CCCcc
Confidence 56553
No 78
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=89.53 E-value=1.8 Score=37.99 Aligned_cols=67 Identities=9% Similarity=0.089 Sum_probs=51.7
Q ss_pred ecCCCeEEEEEccCCcHHHHHHHHHhhcCCCCCceEEEEecCCccccccc--cccccccccccCCCCeEEEE
Q 002523 205 SQETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMN--DRVTMSDDFSAKPGEEVFLQ 274 (912)
Q Consensus 205 ~~d~~~~~i~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~--d~~~tL~d~~l~~~q~IllE 274 (912)
.+|+..+...|+..+|+.+|.+.|....+.....++|..-... ..+. +..+||.++++.++..+++|
T Consensus 11 lPdG~ri~~~F~~~~tl~~v~~~v~~~~~~~~~~f~L~t~~Pr---k~l~~~d~~~tL~e~gL~p~~~l~v~ 79 (80)
T smart00166 11 LPDGSRLVRRFPSSDTLRTVYEFVSAALTDGNDPFTLNSPFPR---RTFTKDDYSKTLLELALLPSSTLVLE 79 (80)
T ss_pred cCCCCEEEEEeCCCCcHHHHHHHHHHcccCCCCCEEEEeCCCC---cCCccccccCCHHHCCCCCceEEEEe
Confidence 4888889999999999999999997666666666777644322 2333 33589999999999998887
No 79
>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=86.50 E-value=4.2 Score=36.23 Aligned_cols=69 Identities=9% Similarity=-0.034 Sum_probs=49.4
Q ss_pred ecCCCeEEEEEccCCcHHHHHHHHHhhcCCCCCceEEEEecCCcccccc----ccccccccccccCCCCeEEEE
Q 002523 205 SQETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLM----NDRVTMSDDFSAKPGEEVFLQ 274 (912)
Q Consensus 205 ~~d~~~~~i~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL----~d~~~tL~d~~l~~~q~IllE 274 (912)
.+++..+...|...+|+.+|...+... +..++.+.|..-+-......+ .+..+||+++||.....++++
T Consensus 11 lp~G~Rl~rrF~~~~tl~~l~~fv~~~-~~~~~~f~L~t~FPrr~~~~~~~~~~~~~~TL~eaGL~~s~~L~V~ 83 (85)
T cd01774 11 LPNGTRVERRFLFTQSLRVIHDFLFSL-KETPEKFQIVTNFPRRVLPCLPSEGDPPPPTLLEAGLSNSEVLFVQ 83 (85)
T ss_pred CCCCCEEEEEeCCCCcHHHHHHHHHhC-CCCCCcEEEecCCCCccccccccccCcCCCCHHHcCCCCccEEEEe
Confidence 478888999999999999999999543 334566777643322222111 245689999999988888887
No 80
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=85.37 E-value=6 Score=35.00 Aligned_cols=71 Identities=11% Similarity=-0.004 Sum_probs=54.4
Q ss_pred eecCCCeEEEEEccCCcHHHHHHHHHhhcCCCCCceEEEEecCCccccccccccccccccccCCCCeEEEEEe
Q 002523 204 VSQETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQ 276 (912)
Q Consensus 204 ~~~d~~~~~i~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k 276 (912)
..++++.+...|...+++.+|...+.. .+.+++.+.|..-.-...... .+..+||+++||.+..+++||.+
T Consensus 11 RlP~G~r~~rrF~~~~~L~~v~~fv~~-~g~~~~~f~L~t~FPRr~~~~-~d~~~TL~e~GL~P~~~LfVq~r 81 (82)
T cd01773 11 RYPDGKREQIALPEQAKLLALVRHVQS-KGYPNERFELLTNFPRRKLSH-LDYDITLQEAGLCPQETVFVQER 81 (82)
T ss_pred ECCCCCEEEEEeCCCCcHHHHHHHHHh-cCCCCCCEEEecCCCCcccCC-cccCCCHHHcCCCCCcEEEEecC
Confidence 358889999999999999999998876 466778888885443322222 34458999999999999999843
No 81
>cd01771 Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=84.69 E-value=6.3 Score=34.72 Aligned_cols=70 Identities=9% Similarity=-0.090 Sum_probs=53.0
Q ss_pred ecCCCeEEEEEccCCcHHHHHHHHHhhcCCCCCceEEEEecCCccccccccccccccccccCCCCeEEEEEe
Q 002523 205 SQETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQ 276 (912)
Q Consensus 205 ~~d~~~~~i~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k 276 (912)
.+++..+...|...+++.+|...|... +.+.+..+|..-+-...... .+.+.||.++||.....++||.+
T Consensus 11 lP~G~r~~rrF~~t~~L~~l~~fv~~~-~~~~~~f~L~t~fPRk~~~~-~d~~~TL~e~gL~p~~~L~Veer 80 (80)
T cd01771 11 TPSGDFLERRFLGDTPLQVLLNFVASK-GYPIDEYKLLSSWPRRDLTQ-LDPNFTLLELKLYPQETLILEER 80 (80)
T ss_pred CCCCCEEEEEeCCCCcHHHHHHHHHhc-CCCCCCEEEecCCCCCCCcC-CCCCCcHHHcCCCCCcEEEEEcC
Confidence 588888999999999999999999764 66666787774433222221 24468999999999999999853
No 82
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=84.50 E-value=6.1 Score=34.27 Aligned_cols=65 Identities=11% Similarity=0.009 Sum_probs=47.8
Q ss_pred ecCCCeEEEEEccCCcHHHHHHHHHhhcCCCCCceEEEEecCCccccccc--cccccccccccCCCCeEEEE
Q 002523 205 SQETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMN--DRVTMSDDFSAKPGEEVFLQ 274 (912)
Q Consensus 205 ~~d~~~~~i~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~--d~~~tL~d~~l~~~q~IllE 274 (912)
.+|+..+...|+..+|+.+|++.|.....- ....+|+.-+... .+. +.++||.++||. ...++++
T Consensus 9 lpdG~~~~~~F~~~~tl~~l~~fv~~~~~~-~~~f~L~t~~Pr~---~~~~~~~~~TL~e~gL~-~s~~~~~ 75 (77)
T cd01767 9 LPDGKRLEQRFNSTHKLSDVRDFVESNGPP-AEPFTLMTSFPRR---VLTDLDYELTLQEAGLV-NEVVFQR 75 (77)
T ss_pred cCCCCEEEEEeCCCCCHHHHHHHHHHcCCC-CCCEEEEeCCCCc---cCCCCCccCcHHHcCCc-cceEEEE
Confidence 478888999999999999999999766433 5567888544322 232 367999999999 5555555
No 83
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=83.69 E-value=3.1 Score=36.53 Aligned_cols=67 Identities=12% Similarity=0.076 Sum_probs=45.0
Q ss_pred eEEEEeeecCCCe--EEEEEccCCcHHHHHHHHHhhcC-C-CCCceEEEEecCCccccccccccccccccc--cCCCCeE
Q 002523 198 LQIRLSVSQETNS--LLVKISLEDNKVDLYKRACNLFI-S-VSEMLYIWDFSGQTTQFLMNDRVTMSDDFS--AKPGEEV 271 (912)
Q Consensus 198 l~lkl~~~~d~~~--~~i~~Sk~~ti~eL~~~v~~lf~-i-~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~--l~~~q~I 271 (912)
+.|.+- ..++.. +++.+...+||.+|++++.+.++ . +++++||- | .+.+|+|. .+|.+.. +..+..|
T Consensus 2 i~l~IK-~~~~~~~~~~ve~~~~~TV~~lK~~i~~~~~~~~~~~~QrLI-y----~GKiLkD~-~tL~~~~~~~~~~~ti 74 (79)
T cd01790 2 VTLLIK-SPNQKYEDQTVSCFLNWTVGELKTHLSRVYPSKPLEQDQRLI-Y----SGKLLPDH-LKLRDVLRKQDEYHMV 74 (79)
T ss_pred eEEEEE-CCCCCeEEEEEecCCcChHHHHHHHHHHhcCCCCChhHeEEE-E----cCeeccch-hhHHHHhhcccCCceE
Confidence 444442 334444 55566899999999999999874 4 46888887 5 34567664 8898885 5544433
No 84
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=81.74 E-value=2.4 Score=36.81 Aligned_cols=52 Identities=10% Similarity=0.060 Sum_probs=41.2
Q ss_pred cCCcHHHHHHHHHhhcC--CC-CCceEEEEecCCccccccccccccccccccCCCCeEEEE
Q 002523 217 LEDNKVDLYKRACNLFI--SV-SEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQ 274 (912)
Q Consensus 217 k~~ti~eL~~~v~~lf~--i~-~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE 274 (912)
-.+||.+|+.++.+.++ ++ ++++||- |. ...|.|. .+|.+.++..|..|.+-
T Consensus 19 ~~~TV~~LK~kI~~~~~egi~~~dqQrLI-y~----GKiL~D~-~TL~dygI~~gstlhLv 73 (75)
T cd01815 19 GGYQVSTLKQLIAAQLPDSLPDPELIDLI-HC----GRKLKDD-QTLDFYGIQSGSTIHIL 73 (75)
T ss_pred ccCcHHHHHHHHHHhhccCCCChHHeEEE-eC----CcCCCCC-CcHHHcCCCCCCEEEEE
Confidence 46899999999999974 64 7889988 53 3347664 89999999999887664
No 85
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=79.57 E-value=4.1 Score=47.13 Aligned_cols=70 Identities=14% Similarity=0.299 Sum_probs=56.2
Q ss_pred EEeeecCCCeEEEEEccCCcHHHHHHHHHhhcCCCCCceEEEEecCCccccccccccccccccccCCCCeEEEEEe
Q 002523 201 RLSVSQETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQ 276 (912)
Q Consensus 201 kl~~~~d~~~~~i~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k 276 (912)
+|.+..-+++..+.+....+|.+||+.|...|++++++++|- | ...+|+|. +||...++.+|-+|=|-++
T Consensus 17 rV~Vkt~~dk~~~~V~~~ssV~qlKE~I~~~f~a~~dqlvLI-f----aGrILKD~-dTL~~~gI~Dg~TvHLVik 86 (493)
T KOG0010|consen 17 RVTVKTPKDKYEVNVASDSSVLQLKELIAQRFGAPPDQLVLI-Y----AGRILKDD-DTLKQYGIQDGHTVHLVIK 86 (493)
T ss_pred EEEEecCCcceeEecccchHHHHHHHHHHHhcCCChhHeeee-e----cCccccCh-hhHHHcCCCCCcEEEEEec
Confidence 443333334889999999999999999999999999999887 4 45677764 8999999999987766554
No 86
>PLN02560 enoyl-CoA reductase
Probab=78.88 E-value=6.2 Score=43.91 Aligned_cols=62 Identities=15% Similarity=0.092 Sum_probs=47.4
Q ss_pred EEEEccCCcHHHHHHHHHhhcCC-CCCceEEEEec--CCccccccccccccccccccCCCCeEEEE
Q 002523 212 LVKISLEDNKVDLYKRACNLFIS-VSEMLYIWDFS--GQTTQFLMNDRVTMSDDFSAKPGEEVFLQ 274 (912)
Q Consensus 212 ~i~~Sk~~ti~eL~~~v~~lf~i-~~e~~RLW~~~--~~~~~~lL~d~~~tL~d~~l~~~q~IllE 274 (912)
++.++..+|+.+|++.+-+..++ +++++||+-.. +..+...|+| +++|.+.++.++.++.+-
T Consensus 17 ~lev~~~aTV~dLK~~Isk~~~~~~~~RqRL~~~~~~gk~~g~~L~d-~ktL~d~gv~~gstLy~k 81 (308)
T PLN02560 17 GLEVPDSATVADLKKAIHKRKKKYYPSRQRLTLPLPPGKTRPTVLDD-SKSLKDYGLGDGGTVVFK 81 (308)
T ss_pred eEEcCCCCcHHHHHHHHHHHcCCCChhheEEEEecCCCCcCccccCC-CCCHHhcCCCCCceEEEE
Confidence 68889999999999999999886 78999999432 2223334555 478999999988876554
No 87
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=78.33 E-value=14 Score=31.78 Aligned_cols=67 Identities=18% Similarity=0.166 Sum_probs=45.5
Q ss_pred EEeeecCCCeEEEEEccCCcHHHHHHHHHhhcCCCCCceEEEEecCCccccccccccccccccccCCCCeEEEEE
Q 002523 201 RLSVSQETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQL 275 (912)
Q Consensus 201 kl~~~~d~~~~~i~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~ 275 (912)
+++ .+|++...+.+....|+.|....+|+..++.++.+.++..- ..+..-++. ++..-.++.+.+|.
T Consensus 4 ~v~-LP~~q~t~V~vrpg~ti~d~L~~~~~kr~L~~~~~~V~~~~-~~k~l~~~~------d~~~L~~~El~ve~ 70 (71)
T PF02196_consen 4 RVH-LPNGQRTVVQVRPGMTIRDALSKACKKRGLNPECCDVRLVG-EKKPLDWDQ------DSSSLPGEELRVEK 70 (71)
T ss_dssp EEE-ETTTEEEEEEE-TTSBHHHHHHHHHHTTT--CCCEEEEEEE-EEEEE-TTS------BGGGGTTSEEEEEE
T ss_pred EEE-CCCCCEEEEEEcCCCCHHHHHHHHHHHcCCCHHHEEEEEcC-CCccccCCC------ceeeecCCEEEEEe
Confidence 443 38888999999999999999999999999999988888443 222222222 22334468888885
No 88
>cd01772 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=77.96 E-value=11 Score=32.89 Aligned_cols=68 Identities=4% Similarity=-0.112 Sum_probs=48.1
Q ss_pred ecCCCeEEEEEccCCcHHHHHHHHHhhcCCCCCceEEEEecCCccccccccccccccccccCCCCeEEEE
Q 002523 205 SQETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQ 274 (912)
Q Consensus 205 ~~d~~~~~i~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE 274 (912)
.+|+..+...|+..+++.+|...|....+-. ....|..-.-..... ..+.++||.+++|.+...++|+
T Consensus 11 lp~G~~~~~~F~~~~tl~~v~~fV~~~~~~~-~~f~L~t~fPrk~~~-~~d~~~TL~elgL~Psa~L~v~ 78 (79)
T cd01772 11 LLDGTTLKQTFKAREQLAAVRLFVELNTGNG-GPFTLMTPFPRKVFT-EDDMEKPLQELGLVPSAVLIVT 78 (79)
T ss_pred CCCCCEEEEEeCCCChHHHHHHHHHHcCCCC-CCEEEEeCCCCeECC-cccccCCHHHCCCCCceEEEEe
Confidence 4788889999999999999999998665332 445555332221111 1244689999999988888876
No 89
>PF05408 Peptidase_C28: Foot-and-mouth virus L-proteinase; InterPro: IPR008739 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C28 (clan CA).The protein fold of the peptidase unit for members of this family resembles that of papain. The leader peptidase of Foot-and-mouth disease virus cleaves itself from the growing polyprotein and also cleaves the host translation initiation factor 4GI (eIF4G), thus inhibiting 5'-cap dependent translation [].; GO: 0004197 cysteine-type endopeptidase activity, 0016032 viral reproduction, 0019082 viral protein processing; PDB: 2JQF_R 1QMY_B 1QOL_G 2JQG_R.
Probab=77.58 E-value=1.2 Score=44.70 Aligned_cols=25 Identities=28% Similarity=0.547 Sum_probs=16.6
Q ss_pred cccccccccCCCcchHHHHHHHHhC
Q 002523 336 LLGLTGLRNLGNTCFMNSAIQCLAH 360 (912)
Q Consensus 336 ~~g~~GL~NlGNTCYmNSvLQ~L~~ 360 (912)
...++|+.|.+|||.+||++|.+..
T Consensus 30 ~~eft~~PN~~dnCWlNaL~QL~~~ 54 (193)
T PF05408_consen 30 KMEFTGLPNNHDNCWLNALLQLFRY 54 (193)
T ss_dssp --EEE----SSSTHHHHHHHHHHHH
T ss_pred ceEEecCCCCCCChHHHHHHHHHHH
Confidence 3466799999999999999998764
No 90
>cd01770 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=75.80 E-value=13 Score=32.72 Aligned_cols=61 Identities=8% Similarity=-0.039 Sum_probs=44.4
Q ss_pred ecCCCeEEEEEccCCcHHHHHHHHHhhcCCC-CCceEEEEecCCccccccccccccccccccCCC
Q 002523 205 SQETNSLLVKISLEDNKVDLYKRACNLFISV-SEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPG 268 (912)
Q Consensus 205 ~~d~~~~~i~~Sk~~ti~eL~~~v~~lf~i~-~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~ 268 (912)
.+|+..++..|...+||.+|++.|.....-+ ...+.|..-+-. ..+.+.++||+|+||.+.
T Consensus 11 lpdG~r~~~rF~~~~tv~~l~~~v~~~~~~~~~~~f~L~t~fP~---k~l~~~~~Tl~eagL~~s 72 (79)
T cd01770 11 LADGKRLVQKFNSSHRVSDVRDFIVNARPEFAARPFTLMTAFPV---KELSDESLTLKEANLLNA 72 (79)
T ss_pred CCCCCEEEEEeCCCCcHHHHHHHHHHhCCCCCCCCEEEecCCCC---cccCCCCCcHHHCCCcCc
Confidence 4888889999999999999999998765432 345666633221 234444799999999853
No 91
>COG3478 Predicted nucleic-acid-binding protein containing a Zn-ribbon domain [General function prediction only]
Probab=75.12 E-value=2.7 Score=34.83 Aligned_cols=37 Identities=16% Similarity=0.407 Sum_probs=28.8
Q ss_pred CCCCCCCCcccccceEEEEEee--cCCceeEEEEeeeEE
Q 002523 806 EDMWYCPRCKKHWQASKKLDLW--RSPDILVIHLKRFSF 842 (912)
Q Consensus 806 ~d~wyC~~Ck~~~~AtKk~~l~--~lP~iLiIHLKRF~~ 842 (912)
.++|.||+|+.+.--.|.+..- .+-+++=||+++|-.
T Consensus 2 ~~~~kCpKCgn~~~~ekei~~tg~~lskifdvq~n~f~~ 40 (68)
T COG3478 2 KNAFKCPKCGNTNYEEKEIAATGGGLSKIFDVQNNKFIV 40 (68)
T ss_pred CccccCCCcCCcchhhceeeccCCCcceeEEecccEEEE
Confidence 3678999999887767766664 677888889998863
No 92
>PF15499 Peptidase_C98: Ubiquitin-specific peptidase-like, SUMO isopeptidase
Probab=74.60 E-value=2.4 Score=45.00 Aligned_cols=71 Identities=18% Similarity=0.325 Sum_probs=48.2
Q ss_pred CCCCcccccceEEEEEeecCCceeEEEEeeeEEcCceecccceEEecCCCCCCCCcccccCCCCCCccEEEEEEEEeeec
Q 002523 810 YCPRCKKHWQASKKLDLWRSPDILVIHLKRFSFSRYFKSKLDTYVDFPIDDLDLSNYVCCKNSQLSNRYVLYAISNHYGG 889 (912)
Q Consensus 810 yC~~Ck~~~~AtKk~~l~~lP~iLiIHLKRF~~~~~~~~Ki~~~V~FPi~~LDls~~v~~~~~~~~~~YdL~AVinH~G~ 889 (912)
-|.+|+.+.| .++|.+.++|+|+.+|+ . .+-..+ |+..|--.- +...|.+-+||--.
T Consensus 172 pCn~C~~ksQ-~rkMvlekv~~vfmLHF---V--eGLP~n------------dl~~ysF~f---eg~~Y~Vt~VIQY~-- 228 (275)
T PF15499_consen 172 PCNSCNSKSQ-RRKMVLEKVPPVFMLHF---V--EGLPHN------------DLQHYSFHF---EGCLYQVTSVIQYQ-- 228 (275)
T ss_pred CCcccCChHH-hHhhhhhcCchhhhhhh---h--ccCCcc------------CCCccceee---cCeeEEEEEEEEEe--
Confidence 5999987744 67899999999999993 2 121121 222221111 44679999999654
Q ss_pred CCCceEEEEEEeCC
Q 002523 890 MGGGHYTAFVDVSC 903 (912)
Q Consensus 890 l~gGHYtAy~k~~~ 903 (912)
...-|+++++++.+
T Consensus 229 ~~~~HFvtWi~~~d 242 (275)
T PF15499_consen 229 ANLNHFVTWIRDSD 242 (275)
T ss_pred ccCceeEEEEEcCC
Confidence 33689999999854
No 93
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=73.31 E-value=10 Score=29.51 Aligned_cols=62 Identities=13% Similarity=0.167 Sum_probs=43.7
Q ss_pred CCCeEEEEEccCCcHHHHHHHHHhhcCCCCCceEEEEecCCccccccccccccccccccCCCCeEEEE
Q 002523 207 ETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQ 274 (912)
Q Consensus 207 d~~~~~i~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE 274 (912)
+.....+.++...|+.++++.+++.++++++.++|+.. ...+.+. ..+.+.++..+..|.+.
T Consensus 6 ~~~~~~~~~~~~~tv~~l~~~i~~~~~~~~~~~~l~~~-----~~~~~~~-~~~~~~~~~~~~~i~~~ 67 (69)
T cd00196 6 DGKTVELLVPSGTTVADLKEKLAKKLGLPPEQQRLLVN-----GKILPDS-LTLEDYGLQDGDELVLV 67 (69)
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHCcChHHeEEEEC-----CeECCCC-CcHHHcCCCCCCEEEEE
Confidence 45667888889999999999999999999988988732 1222222 23345566666666553
No 94
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=72.37 E-value=19 Score=31.00 Aligned_cols=66 Identities=17% Similarity=0.118 Sum_probs=48.3
Q ss_pred ecCCCeEEEEEccCCcHHHHHHHHHhhcCCCCCceEEEEecCCccccccccccccccccccCCCCeEEEEE
Q 002523 205 SQETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQL 275 (912)
Q Consensus 205 ~~d~~~~~i~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~ 275 (912)
.+|+....+.+-...|+.|+.+.+|+..++.++.+.+....... ...+ +. -+++....++.|.+|.
T Consensus 6 LPng~~t~V~vrpg~ti~d~L~~~c~kr~l~~~~~~v~~~~~~~-~~~~-~~---~~d~~~L~~~El~Ve~ 71 (72)
T cd01760 6 LPNGQRTVVPVRPGMSVRDVLAKACKKRGLNPECCDVFLLGLDE-KKPL-DL---DTDSSSLAGEELEVEP 71 (72)
T ss_pred CcCCCeEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEecCCC-cCCc-Cc---hhhhhhhcCCEEEEEe
Confidence 47888899999999999999999999999999988888553322 0111 11 2344555677888774
No 95
>smart00455 RBD Raf-like Ras-binding domain.
Probab=72.06 E-value=21 Score=30.57 Aligned_cols=64 Identities=16% Similarity=0.121 Sum_probs=47.3
Q ss_pred ecCCCeEEEEEccCCcHHHHHHHHHhhcCCCCCceEEEEecCCccccccccccccccccccCCCCeEEEEE
Q 002523 205 SQETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQL 275 (912)
Q Consensus 205 ~~d~~~~~i~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~ 275 (912)
.+|+....+.+-...|+.|+...+|+..++.++.+.+... +.++..-++. ++..-.++.+.+|.
T Consensus 6 LP~~~~~~V~vrpg~tl~e~L~~~~~kr~l~~~~~~v~~~-g~~k~ldl~~------~~~~l~~~el~ve~ 69 (70)
T smart00455 6 LPDNQRTVVKVRPGKTVRDALAKALKKRGLNPECCVVRLR-GEKKPLDLNQ------PISSLDGQELVVEE 69 (70)
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEc-CCCcceecCC------ccccccCceEEEEe
Confidence 4788889999999999999999999999999998877743 3223222222 23334578888874
No 96
>KOG4495 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B [Transcription]
Probab=71.86 E-value=6.5 Score=35.26 Aligned_cols=57 Identities=7% Similarity=0.144 Sum_probs=43.5
Q ss_pred cCCCeEEEEEccCCcHHHHHHHHHhhcCCCCCceEEEEecCCccccccccccccccccccC
Q 002523 206 QETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAK 266 (912)
Q Consensus 206 ~d~~~~~i~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~ 266 (912)
+....+.+.....+|+-+|+.++.-+..=|.++.|||.... ..+|.| .+||.|+|+.
T Consensus 9 R~kttif~da~es~tV~elK~~l~gi~~~Pvn~qrL~kmd~---eqlL~D-~ktL~d~gft 65 (110)
T KOG4495|consen 9 RHKTTIFTDAKESSTVFELKRKLEGILKRPVNEQRLYKMDT---EQLLDD-GKTLGDCGFT 65 (110)
T ss_pred ecceeEEeecCccccHHHHHHHHHHHHhCCCcchheeecCH---HHHhhc-cchhhhcccc
Confidence 33345566667888999999999888888999999997642 256655 5899999865
No 97
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.
Probab=69.88 E-value=11 Score=32.78 Aligned_cols=54 Identities=13% Similarity=0.023 Sum_probs=40.9
Q ss_pred ccCCcHHHHHHHHHhhcC-CCCCceEEEEecCCccccccccccccccccccCCCCeEEE
Q 002523 216 SLEDNKVDLYKRACNLFI-SVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFL 273 (912)
Q Consensus 216 Sk~~ti~eL~~~v~~lf~-i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~Ill 273 (912)
+...|+.+|++.+-+..+ ++++++||+... +...|.+. .+|.+.++..|.+|.+
T Consensus 20 ~~~aTV~dlk~~i~~~~~~~~~~Rqrl~~~~---~g~~L~d~-~tL~~~gv~~g~~lyv 74 (77)
T cd01801 20 SGDATIADLKKLIAKSSPQLTVNRQSLRLEP---KGKSLKDD-DTLVDLGVGAGATLYV 74 (77)
T ss_pred CCCccHHHHHHHHHHHcCCCCcceeEEEeCC---CCcccCCc-ccHhhcCCCCCCEEEE
Confidence 467899999999988876 478899998432 44455553 6799999988877654
No 98
>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS12 (regulator of G signalling 12), and RGS14, are members of a family of GTPase-activating proteins (GAP's) specific for the G-alpha subunit, which act as key inhibitors of G-protein-mediated cell responses in eukaryotes. Their domain architecture includes tandem RBD domains as well as PDZ , PTB, and RGS, and GoLoco domains.
Probab=69.88 E-value=24 Score=30.46 Aligned_cols=65 Identities=17% Similarity=0.204 Sum_probs=50.5
Q ss_pred ecCCCeEEEEEccCCcHHHHHHHHHhhcCCCCCceEEEEecCCccccccccccccccccccCCCCeEEEEEe
Q 002523 205 SQETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQ 276 (912)
Q Consensus 205 ~~d~~~~~i~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k 276 (912)
.+|++...+.+....|+.++...+|+.-++..+.+.++.. +..+...++. |+.+-.|+++.+|-+
T Consensus 6 LPdg~~T~V~vrpG~ti~d~L~kllekRgl~~~~~~vf~~-g~~k~l~~~q------D~~~L~~~El~vE~r 70 (73)
T cd01817 6 LPDGSTTVVPTRPGESIRDLLSGLCEKRGINYAAVDLFLV-GGDKPLVLDQ------DSSVLAGQEVRLEKR 70 (73)
T ss_pred CCCCCeEEEEecCCCCHHHHHHHHHHHcCCChhHEEEEEe-cCCcccccCC------ccceeeccEEEEEEe
Confidence 4788889999999999999999999999999999988866 3333333332 344456788999854
No 99
>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=69.62 E-value=5.1 Score=32.67 Aligned_cols=57 Identities=14% Similarity=0.140 Sum_probs=43.8
Q ss_pred CeEEEEEccCCcHHHHHHHHHhhcCCCCCceEEEEecCCccccccccccccccccccCCCCeE
Q 002523 209 NSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEV 271 (912)
Q Consensus 209 ~~~~i~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~I 271 (912)
..+.+.+...+++..+++++-+..|||+.++||- |.+ ..++| +.|-.+.++..|.++
T Consensus 11 KeIeidIep~DkverIKErvEEkeGIPp~qqrli-~~g----kqm~D-D~tA~~Y~~~~GSVl 67 (70)
T KOG0005|consen 11 KEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLI-YAG----KQMND-DKTAAHYNLLGGSVL 67 (70)
T ss_pred ceEEEeeCcchHHHHHHHHhhhhcCCCchhhhhh-hcc----ccccc-cccHHHhhhccceeE
Confidence 4577888999999999999999999999999887 533 33545 366777777666543
No 100
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=66.56 E-value=15 Score=30.99 Aligned_cols=38 Identities=13% Similarity=0.118 Sum_probs=26.2
Q ss_pred ecCCCeEEEEEccCCcHHHHHHHHHhhcCCCCCceEEE
Q 002523 205 SQETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIW 242 (912)
Q Consensus 205 ~~d~~~~~i~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW 242 (912)
.++.....+.+++..++.++.+.+|+.|++++++..|-
T Consensus 3 ~~~~rr~~vkvtp~~~l~~VL~eac~k~~l~~~~~~L~ 40 (65)
T PF11470_consen 3 CYNFRRFKVKVTPNTTLNQVLEEACKKFGLDPSSYDLK 40 (65)
T ss_dssp -TTS-EEEE---TTSBHHHHHHHHHHHTT--GGG-EEE
T ss_pred ccCCcEEEEEECCCCCHHHHHHHHHHHcCCCccceEEE
Confidence 35567789999999999999999999999999866555
No 101
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=62.73 E-value=23 Score=31.21 Aligned_cols=46 Identities=7% Similarity=0.060 Sum_probs=37.1
Q ss_pred eEEEEeeecCCCeEEEEEccCCcHHHHHHHHHhhcCCCCCceEEEEecC
Q 002523 198 LQIRLSVSQETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSG 246 (912)
Q Consensus 198 l~lkl~~~~d~~~~~i~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~ 246 (912)
..+|++... .+.+++...-+..+|.+++++.++++++.+.|+-...
T Consensus 3 ~vvKV~f~~---tIaIrvp~~~~y~~L~~ki~~kLkl~~e~i~LsYkde 48 (80)
T cd06406 3 YVVKVHFKY---TVAIQVARGLSYATLLQKISSKLELPAEHITLSYKSE 48 (80)
T ss_pred eEEEEEEEE---EEEEEcCCCCCHHHHHHHHHHHhCCCchhcEEEeccC
Confidence 445554332 6889999999999999999999999999999994443
No 102
>PF08715 Viral_protease: Papain like viral protease; InterPro: IPR014827 This family of viral proteases are similar to the papain protease and are required for proteolytic processing of the replicase polyprotein. The structure of this protein has shown it adopts a fold similar to that of de-ubiquitinating enzymes []. ; GO: 0004197 cysteine-type endopeptidase activity, 0008242 omega peptidase activity, 0016740 transferase activity; PDB: 3MP2_A 3EWP_B 3EWO_B 2FE8_A 3MJ5_B 3EKE_A 3EJF_A 3JZT_H 3ETI_E 3E9S_A.
Probab=60.61 E-value=19 Score=40.19 Aligned_cols=80 Identities=18% Similarity=0.166 Sum_probs=41.4
Q ss_pred ccccccccccCCCcchHHHHHHHHhCChH-HHHHHHhhcccccccCCCCCCchHHHHHHHHHHHHhcCCCCCccChHHHH
Q 002523 335 CLLGLTGLRNLGNTCFMNSAIQCLAHTPE-IVDYFLGDYQKEINYENPLGLNGELALAFGDLLRKLWAPGGIPVAPRMFK 413 (912)
Q Consensus 335 ~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~-f~~~ll~~~~~~~~~~n~l~~~~~l~~~l~~L~~~l~~~~~~~i~P~~~~ 413 (912)
...|..=|.=.-|.||+||++=.|=++.. |+. .++.++..++..+ .|..|.
T Consensus 98 ~~~g~~~Lkq~dNNCwVna~~~~LQ~~~~~f~~-----------------------~~l~~aw~~f~~G-----~~~~fV 149 (320)
T PF08715_consen 98 VVNGFRVLKQSDNNCWVNAACLQLQALKIKFKS-----------------------PGLDEAWNEFKAG-----DPAPFV 149 (320)
T ss_dssp EETTEEEE---TTTHHHHHHHHHHTTST--BSS-----------------------HHHHHHHHHHHTT-------HHHH
T ss_pred EECCEEEEEecCCCcHHHHHHHHHHhcCCccCC-----------------------HHHHHHHHHHhCC-----ChHHHH
Confidence 34566777777899999999876665532 221 1122222222222 355555
Q ss_pred HHHhhhCCCCCCCCcCCHHHHHHHHHHHHH
Q 002523 414 LKLANFAPQFSGYNQHDSQEFLAFLLDGLH 443 (912)
Q Consensus 414 ~~l~~~~~~F~~~~QqDA~EfL~~LLd~L~ 443 (912)
..+-.. .....++--||+++|..||+.++
T Consensus 150 a~~Ya~-~~~~~G~~gDa~~~L~~ll~~~~ 178 (320)
T PF08715_consen 150 AWCYAS-TNAKKGDPGDAEYVLSKLLKDAD 178 (320)
T ss_dssp HHHHHH-TT--TTS---HHHHHHHHHTTB-
T ss_pred HHHHHH-cCCCCCCCcCHHHHHHHHHHhcc
Confidence 544332 34566789999999999998665
No 103
>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]
Probab=58.32 E-value=54 Score=30.02 Aligned_cols=70 Identities=19% Similarity=0.287 Sum_probs=54.5
Q ss_pred eEEEEeeecCCCeEEEEEccCCcHHHHHHHHHhhcCCCCCceEEEEecCCccccccccccccccccccCCCCeEEEE
Q 002523 198 LQIRLSVSQETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQ 274 (912)
Q Consensus 198 l~lkl~~~~d~~~~~i~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE 274 (912)
+.|||.- ++++.+.+.+.+...+.-|++.-|+.-|++...+|.. +.+. .+.. .+|..++..+.+..|=+-
T Consensus 21 i~LKV~g-qd~~~~~Fkikr~t~LkKLM~aYc~r~Gl~~~s~RFl-FdG~----rI~~-~~TP~~L~mEd~D~Iev~ 90 (99)
T KOG1769|consen 21 INLKVKG-QDGSVVVFKIKRHTPLKKLMKAYCERQGLSMNSLRFL-FDGQ----RIRE-THTPADLEMEDGDEIEVV 90 (99)
T ss_pred EEEEEec-CCCCEEEEEeecCChHHHHHHHHHHHcCCccceEEEE-ECCc----CcCC-CCChhhhCCcCCcEEEEE
Confidence 4556543 6678889999999999999999999999999999887 4332 2333 478899999888876443
No 104
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []. Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.
Probab=53.85 E-value=41 Score=29.32 Aligned_cols=71 Identities=11% Similarity=0.141 Sum_probs=44.3
Q ss_pred EEeeecC-CCeEEEEEccCCcHHHHHHHHHhhcCCCCCc---eEEEEecCCccccccccccccccccccCCCCeEEE
Q 002523 201 RLSVSQE-TNSLLVKISLEDNKVDLYKRACNLFISVSEM---LYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFL 273 (912)
Q Consensus 201 kl~~~~d-~~~~~i~~Sk~~ti~eL~~~v~~lf~i~~e~---~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~Ill 273 (912)
++.+... ...+.+.+-..-++++|...+...++.+... ..-|... ..+...|.. +++|.++++.+|..+.+
T Consensus 4 rVtv~~~~~~~~Dl~lP~~vpv~~li~~l~~~~~~~~~~~~~~~~~~L~-~~~g~~L~~-~~tL~~~gV~dGd~L~L 78 (79)
T PF08817_consen 4 RVTVDAGNGRQVDLALPADVPVAELIPELVELLGLPGDDPPGHGQWVLA-RAGGRPLDP-DQTLADAGVRDGDVLVL 78 (79)
T ss_dssp EEEEE-TT--EEEEEEETTSBTTHHHHHHHHHS---S---TT-E-EEEG--GGTEEEET-TSBCGGGT--TT-EEEE
T ss_pred EEEEEcCCCcEEEEEcCCCCcHHHHHHHHHHHhCCccCCCCCcceEEEE-ecCCcccCC-cCcHhHcCCCCCCEEEe
Confidence 4444444 3778889999999999999999999986543 3468666 345556655 58999999999988765
No 105
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=47.05 E-value=1.2e+02 Score=26.63 Aligned_cols=52 Identities=27% Similarity=0.188 Sum_probs=42.1
Q ss_pred eeEEEeCCCCCHHHHHHHHHhhcCCC-CCCcEEEEEEecc-eeeeeccCCcccc
Q 002523 541 PFTVTVPKYGRFQDLIDALSTKCFLR-NHEKLLVAEIYRS-KIFRVLDEPSDLL 592 (912)
Q Consensus 541 ~~~v~v~k~~~~~~l~~~l~~~~~~~-~~~~l~~~ei~~~-~i~~~~~~~~~~~ 592 (912)
-.++.+++..+..+++..+.+++++. ++....++|+... ...+.+.+...++
T Consensus 14 ~kti~V~~~~t~~~Vi~~~l~k~~l~~~~~~y~L~ev~~~~~~er~L~~~e~pl 67 (87)
T cd01768 14 YKTLRVSKDTTAQDVIQQLLKKFGLDDDPEDYALVEVLGDGGLERLLLPDECPL 67 (87)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCcCCcccEEEEEEECCceEEEEeCCCCChH
Confidence 35788999999999999999999998 8889999999876 5566666544443
No 106
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=46.41 E-value=44 Score=31.39 Aligned_cols=53 Identities=4% Similarity=-0.001 Sum_probs=39.3
Q ss_pred cCC-CeEEEEEccCCcHHHHHHHHHhhc-----C--CCCCceEEEEecCCccccccccccccccccc
Q 002523 206 QET-NSLLVKISLEDNKVDLYKRACNLF-----I--SVSEMLYIWDFSGQTTQFLMNDRVTMSDDFS 264 (912)
Q Consensus 206 ~d~-~~~~i~~Sk~~ti~eL~~~v~~lf-----~--i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~ 264 (912)
+|+ ..=...++..+||.+|+++|.... + .+.+++||- | ...+|.|. +||.+++
T Consensus 12 ~dg~digp~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLI-y----sGKiLeD~-~TL~d~~ 72 (113)
T cd01814 12 YDGSDIGPKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLI-S----AGKILENS-KTVGECR 72 (113)
T ss_pred cCCCccCccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEE-e----CCeecCCC-CcHHHhC
Confidence 443 444677889999999999999666 3 347788887 4 34467664 8999998
No 107
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=44.64 E-value=76 Score=33.39 Aligned_cols=63 Identities=10% Similarity=0.099 Sum_probs=37.4
Q ss_pred CeEEEEEccCCcHHHHHHHHHhhcCCCCC---ceEEEEecCCccccccccccccccccccCCCCeEEEE
Q 002523 209 NSLLVKISLEDNKVDLYKRACNLFISVSE---MLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQ 274 (912)
Q Consensus 209 ~~~~i~~Sk~~ti~eL~~~v~~lf~i~~e---~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE 274 (912)
....+.+.+..||.+|.+.+.+..+++.+ ++|+|..++..-...+.. +..+... .....+.+|
T Consensus 34 ~~~~~~vpk~~tV~Dll~~l~~k~~~~~~~~~~lrl~ev~~~ki~~~~~~-d~~i~~l--~~~~~~r~E 99 (213)
T PF14533_consen 34 QEYELLVPKTGTVSDLLEELQKKVGFSEEGTGKLRLWEVSNHKIYKILSE-DEPISSL--NDYITLRIE 99 (213)
T ss_dssp -EEEE--BTT-BHHHHHHHHHTT----TT----EEEEEEETTEEEEEE-T-TSBGGGS----TTEEEEE
T ss_pred eEEEEEECCCCCHHHHHHHHHHHcCCCcCCcCcEEEEEeECCEEEeecCC-CCchhhc--cCcceeeee
Confidence 45788999999999999999999999765 799999977655555543 3455554 222246666
No 108
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=44.37 E-value=1.6e+02 Score=26.01 Aligned_cols=64 Identities=17% Similarity=0.146 Sum_probs=38.0
Q ss_pred eeeEEEeCCCCCHHHHHHHHHhhcCCCCCCcEEEEE-EecceeeeeccCCcccccc--cCCCCcEEE
Q 002523 540 APFTVTVPKYGRFQDLIDALSTKCFLRNHEKLLVAE-IYRSKIFRVLDEPSDLLGL--IRDEDKLVA 603 (912)
Q Consensus 540 ~~~~v~v~k~~~~~~l~~~l~~~~~~~~~~~l~~~e-i~~~~i~~~~~~~~~~~~~--i~~~d~i~~ 603 (912)
.....++++..++.+|+..|...+|++...+-+... -........+.|....+.. +.++..|.+
T Consensus 14 ~~~ekr~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~dg~~i~V 80 (87)
T PF14560_consen 14 RSVEKRFPKSITVSELKQKLEKLTGIPPSDMRLQLKSDKDDSKIEELDDDDATLGSYGIKDGMRIHV 80 (87)
T ss_dssp SEEEEEEETTSBHHHHHHHHHHHHTS-TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-STTEEEEE
T ss_pred eeEEEEcCCCCCHHHHHHHHHHHhCCCcccEEEEEEecCCCccccccCCCccEeecCCCCCCCEEEE
Confidence 345678999999999999999999998655444321 1233333444444444443 344444443
No 109
>cd01777 SNX27_RA Ubiquitin domain of SNX27 (sorting nexin protein 27). SNX27_RA SNX27 (sorting nexin protein 27) belongs to a large family of endosome-localized proteins related to sorting nexin1 which is implicated in regulating membrane traffic. The domain architecture of SNX27 includes an amino-terminal PDZ domain, a PX (PhoX homologous) domain, and a carboxy-terminal RA (RAS-associated) domain.
Probab=42.89 E-value=45 Score=29.82 Aligned_cols=42 Identities=10% Similarity=0.157 Sum_probs=35.7
Q ss_pred eeEEEEeeecCCCeEEEEEccCCcHHHHHHHHHhhcCCCCCce
Q 002523 197 PLQIRLSVSQETNSLLVKISLEDNKVDLYKRACNLFISVSEML 239 (912)
Q Consensus 197 Pl~lkl~~~~d~~~~~i~~Sk~~ti~eL~~~v~~lf~i~~e~~ 239 (912)
|.+|++.+ +|+..+++.+.+.++..++.+.++...++|.+-+
T Consensus 1 ~V~L~V~L-pdg~~i~V~v~~s~~a~~Vleav~~kl~L~~e~~ 42 (87)
T cd01777 1 DVELRIAL-PDKATVTVRVRKNATTDQVYQALVAKAGMDSYTQ 42 (87)
T ss_pred CeEEEEEc-cCCCEEEEEEEEcccHHHHHHHHHHHhCCCHHHH
Confidence 34566654 7788999999999999999999999999998754
No 110
>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2. OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.
Probab=41.82 E-value=91 Score=27.05 Aligned_cols=63 Identities=6% Similarity=0.029 Sum_probs=51.4
Q ss_pred CeEEEEEccCCcHHHHHHHHHhhcCCCCCceEEEEecCCccccccccccccccccccCCCCeEEE
Q 002523 209 NSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFL 273 (912)
Q Consensus 209 ~~~~i~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~Ill 273 (912)
...++.++..++|..+++.+....+++- .+||-.-....+..+|.+. .+|.+.|+..+-.|.+
T Consensus 11 ~dl~l~vnPy~pI~k~K~kI~~~~~~~g-~qrLsfQepgg~rqlL~s~-~sLA~yGiFs~~~i~l 73 (80)
T cd01811 11 SDWILRVNPYSPIRKIKEKIRRSRNCSG-LQRLSFQEPGGERQLLSSR-KSLADYGIFSKTNICL 73 (80)
T ss_pred CceEEEeCCcchHHHHHHHHHHhhCccc-ceEEEeecCCccccccccc-ccHhhhcceeccEEEE
Confidence 4477889999999999999999999987 7888866656666777664 7899999988876654
No 111
>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones]
Probab=41.25 E-value=36 Score=43.08 Aligned_cols=64 Identities=9% Similarity=0.101 Sum_probs=52.4
Q ss_pred cCCCeEEEEEccCCcHHHHHHHHHhhcCCCCCceEEEEecCCccccccccccccccccccCCCCeEEEEEe
Q 002523 206 QETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQ 276 (912)
Q Consensus 206 ~d~~~~~i~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k 276 (912)
=|....++.|...+||++|++.++...+|+.++.||- | ..-+|.|+ +++.++++ +|++|=|-.+
T Consensus 10 ld~r~~t~~ig~q~ti~~~~d~~r~~~ni~s~~qr~i-~----~grvl~~~-k~vq~~~v-dgk~~hlver 73 (1143)
T KOG4248|consen 10 LDSRTRTFIIGAQMTIKEFKDHIRASVNIPSEKQRLI-Y----QGRVLQDD-KKVQEYNV-DGKVIHLVER 73 (1143)
T ss_pred cccceeEEEechHHHHHHHHHHHHHhcccccccceee-e----cceeeccc-hhhhhccC-CCeEEEeecc
Confidence 3556789999999999999999999999999999987 4 34467664 88999999 7887755444
No 112
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A.
Probab=40.68 E-value=1.9e+02 Score=27.25 Aligned_cols=72 Identities=13% Similarity=0.216 Sum_probs=44.7
Q ss_pred eEEEEeeecCCCeEEEEEccCCcHHHHHHHHHhhc----CC-C--CCceEEEEecCCccccccccccccccccccCCCCe
Q 002523 198 LQIRLSVSQETNSLLVKISLEDNKVDLYKRACNLF----IS-V--SEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEE 270 (912)
Q Consensus 198 l~lkl~~~~d~~~~~i~~Sk~~ti~eL~~~v~~lf----~i-~--~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~ 270 (912)
++|++.+....+...+.|+...|+.+|++++...- .. + ...+||- + .+-+|+| +.+|.++++..+..
T Consensus 3 i~lkf~l~~G~d~~~~~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI-~----~GriL~d-~~tL~~~~~~~~~~ 76 (111)
T PF13881_consen 3 IELKFRLADGKDIGPFRFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLI-Y----AGRILED-NKTLSDCRLPSGET 76 (111)
T ss_dssp EEEEEEETTS-EEEEEEE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEE-E----TTEEE-S-SSBTGGGT--TTSE
T ss_pred EEEEEEEeCCCcccccccCccChHHHHHHHHHHHCccccccCCCChhhEEEE-e----CCeecCC-cCcHHHhCCCCCCC
Confidence 45555444333378899999999999999998643 11 1 2467777 3 2336665 58999998887764
Q ss_pred ----EEEEE
Q 002523 271 ----VFLQL 275 (912)
Q Consensus 271 ----IllE~ 275 (912)
+++-+
T Consensus 77 ~~~~~vmHl 85 (111)
T PF13881_consen 77 PGGPTVMHL 85 (111)
T ss_dssp TT--EEEEE
T ss_pred CCCCEEEEE
Confidence 55553
No 113
>KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis]
Probab=38.96 E-value=46 Score=32.89 Aligned_cols=61 Identities=8% Similarity=0.058 Sum_probs=50.2
Q ss_pred eEEEEEccCCcHHHHHHHHHhhcCCCCCceEEEEecCCccccccccccccccccccCCCCeEEEEEe
Q 002523 210 SLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQ 276 (912)
Q Consensus 210 ~~~i~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k 276 (912)
.++..+...+|+..++..+....+||+++.|+.+. ...|+|. .+|.|.+++...++-+-++
T Consensus 12 ti~~eve~~~ti~~~Kakiq~~egIp~dqqrlifa-----g~qLedg-rtlSDY~Iqkestl~l~l~ 72 (156)
T KOG0004|consen 12 TITLEVEANDTIDNVKAKIQDKEGIPPDQQRLIFA-----GKQLEDG-RTLSDYNIQKESTLHLVLR 72 (156)
T ss_pred ceeeeecccccHHHHHHhhhcccCCCchhhhhhhh-----hcccccC-CccccccccccceEEEEEE
Confidence 46778899999999999999999999999988833 3456665 8899999998887766555
No 114
>PF02017 CIDE-N: CIDE-N domain; InterPro: IPR003508 This domain consists of caspase-activated (CAD) nucleases, which induce DNA fragmentation and chromatin condensation during apoptosis, and the cell death activator proteins CIDE-A and CIDE-B, which are inhibitors of CAD nuclease. The two proteins interact through the region defined by the method signatures.; GO: 0006915 apoptosis, 0005622 intracellular; PDB: 1IBX_A 2EEL_A 1F2R_I 1C9F_A 1D4B_A.
Probab=37.19 E-value=93 Score=27.36 Aligned_cols=58 Identities=17% Similarity=0.191 Sum_probs=34.4
Q ss_pred CCcHHHHHHHHHhhcCCCCCceEEEEecCCccccccccccccccccccCCCCeEEEEEeecCccc
Q 002523 218 EDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQVHGFSD 282 (912)
Q Consensus 218 ~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k~dG~W~ 282 (912)
+.++.||+.++|..|+++.+.++|.-...++ ...+. . -..--+++++++-+..+.+|.
T Consensus 20 A~sL~eL~~K~~~~l~~~~~~~~lvL~eDGT---~VddE-e---yF~tLp~nT~lm~L~~ge~W~ 77 (78)
T PF02017_consen 20 ASSLEELLEKACDKLQLPEEPVRLVLEEDGT---EVDDE-E---YFQTLPDNTVLMLLEKGEKWT 77 (78)
T ss_dssp ESSHHHHHHHHHHHHT-SSSTCEEEETTTTC---BESSC-H---HHCCSSSSEEEEEEESSS--S
T ss_pred cCCHHHHHHHHHHHhCCCCcCcEEEEeCCCc---EEccH-H---HHhhCCCCCEEEEECCCCccC
Confidence 5789999999999999998888887443222 12111 0 112223556666666666773
No 115
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=34.51 E-value=1.7e+02 Score=25.55 Aligned_cols=44 Identities=11% Similarity=0.069 Sum_probs=34.4
Q ss_pred EEEEeeecC---CCeEEEEEccCCcHHHHHHHHHhhcCCC--CCceEEE
Q 002523 199 QIRLSVSQE---TNSLLVKISLEDNKVDLYKRACNLFISV--SEMLYIW 242 (912)
Q Consensus 199 ~lkl~~~~d---~~~~~i~~Sk~~ti~eL~~~v~~lf~i~--~e~~RLW 242 (912)
.++|+.... ...+++.++...|..++...+.+.|++. +.+..||
T Consensus 4 ~lrVy~~~~~~~~~~k~i~v~~~tTa~evi~~~l~k~~l~~~~~~y~L~ 52 (93)
T PF00788_consen 4 VLRVYDGDGSPGSTYKTIKVSSSTTAREVIEMALEKFGLAEDPSDYCLV 52 (93)
T ss_dssp EEEEEETTSSSCCSEEEEEEETTSBHHHHHHHHHHHTTTSSSGGGEEEE
T ss_pred EEEEEcCCCCCCccEEEEEECCCCCHHHHHHHHHHHhCCCCCCCCEEEE
Confidence 456654322 2378999999999999999999999993 4578887
No 116
>smart00314 RA Ras association (RalGDS/AF-6) domain. RasGTP effectors (in cases of AF6, canoe and RalGDS); putative RasGTP effectors in other cases. Kalhammer et al. have shown that not all RA domains bind RasGTP. Predicted structure similar to that determined, and that of the RasGTP-binding domain of Raf kinase. Predicted RA domains in PLC210 and nore1 found to bind RasGTP. Included outliers (Grb7, Grb14, adenylyl cyclases etc.)
Probab=34.03 E-value=2.6e+02 Score=24.65 Aligned_cols=52 Identities=25% Similarity=0.278 Sum_probs=40.8
Q ss_pred eeEEEeCCCCCHHHHHHHHHhhcCCCC-CCcEEEEEEecceeeeeccCCcccc
Q 002523 541 PFTVTVPKYGRFQDLIDALSTKCFLRN-HEKLLVAEIYRSKIFRVLDEPSDLL 592 (912)
Q Consensus 541 ~~~v~v~k~~~~~~l~~~l~~~~~~~~-~~~l~~~ei~~~~i~~~~~~~~~~~ 592 (912)
-.++.+.+..+..+++..+.+..++.. ++...++|+......+.+.+...++
T Consensus 17 ~kti~v~~~tTa~~Vi~~~l~k~~l~~~~~~y~L~e~~~~~~er~L~~~e~Pl 69 (90)
T smart00314 17 YKTLRVSSRTTARDVIQQLLEKFHLTDDPEEYVLVEVLPDGKERVLPDDENPL 69 (90)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCCCCcccEEEEEEeCCcEEEEeCCCCcce
Confidence 356789999999999999999999976 6889999998556666666544333
No 117
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=31.63 E-value=1.6e+02 Score=25.76 Aligned_cols=40 Identities=13% Similarity=0.107 Sum_probs=33.9
Q ss_pred CCeEEEEEccCCcHHHHHHHHHhhcCCC--CCceEEEEecCC
Q 002523 208 TNSLLVKISLEDNKVDLYKRACNLFISV--SEMLYIWDFSGQ 247 (912)
Q Consensus 208 ~~~~~i~~Sk~~ti~eL~~~v~~lf~i~--~e~~RLW~~~~~ 247 (912)
+..+++.+++..|..++...+.+.|++. +++..|+.+...
T Consensus 12 ~~~kti~V~~~~t~~~Vi~~~l~k~~l~~~~~~y~L~ev~~~ 53 (87)
T cd01768 12 GTYKTLRVSKDTTAQDVIQQLLKKFGLDDDPEDYALVEVLGD 53 (87)
T ss_pred ccEEEEEECCCCCHHHHHHHHHHHhCCcCCcccEEEEEEECC
Confidence 6678999999999999999999999998 456778766544
No 118
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=31.58 E-value=86 Score=34.85 Aligned_cols=66 Identities=14% Similarity=0.204 Sum_probs=53.4
Q ss_pred CCCeEEEEEccCCcHHHHHHHHHhhcC--CCCCceEEEEecCCccccccccccccccccccCCCCeEEEEEeec
Q 002523 207 ETNSLLVKISLEDNKVDLYKRACNLFI--SVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQVH 278 (912)
Q Consensus 207 d~~~~~i~~Sk~~ti~eL~~~v~~lf~--i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k~d 278 (912)
+...+++.+...+||.++|+.+-...+ .|.++++|- | ...+|.|. .++.+.++..+..|++.+..+
T Consensus 9 ~q~~F~iev~Pe~tV~evK~kIet~~g~dyP~~~QkLI-y----~GkiL~D~-~tv~Eykv~E~~fiVvMlsK~ 76 (340)
T KOG0011|consen 9 KQQTFTIEVKPEDTVVEVKKKIETEKGPDYPAEQQKLI-Y----SGKILKDE-TTVGEYKVKEKKFIVVMLSKD 76 (340)
T ss_pred cCceeEeecCcchhHHHHHHHHHhccCCCCchhhheee-e----cceeccCC-cchhhhccccCceEEEEEecC
Confidence 356679999999999999999999998 777777665 4 34567774 889999999999888887643
No 119
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=31.58 E-value=2.7e+02 Score=23.72 Aligned_cols=37 Identities=8% Similarity=0.134 Sum_probs=30.6
Q ss_pred cCCCeEEEEEccCCcHHHHHHHHHhhcCCCCCc-eEEE
Q 002523 206 QETNSLLVKISLEDNKVDLYKRACNLFISVSEM-LYIW 242 (912)
Q Consensus 206 ~d~~~~~i~~Sk~~ti~eL~~~v~~lf~i~~e~-~RLW 242 (912)
.|+...++.+++..|+.++.+.||..++|...+ .-|.
T Consensus 4 lD~~~~~~~v~~~~t~~~l~~~v~~~l~l~e~~~FgL~ 41 (80)
T PF09379_consen 4 LDGTTKTFEVDPKTTGQDLLEQVCDKLGLKEKEYFGLQ 41 (80)
T ss_dssp SSEEEEEEEEETTSBHHHHHHHHHHHHTTSSGGGEEEE
T ss_pred cCCCcEEEEEcCCCcHHHHHHHHHHHcCCCCccEEEEE
Confidence 566778999999999999999999999998543 4444
No 120
>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]
Probab=30.88 E-value=1.4e+02 Score=26.73 Aligned_cols=59 Identities=19% Similarity=0.162 Sum_probs=47.0
Q ss_pred cCCCeEEEEEccCCcHHHHHHHHHhhcCCCCCceEEEEecCCccccccccccccccccccCCCCe
Q 002523 206 QETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEE 270 (912)
Q Consensus 206 ~d~~~~~i~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~ 270 (912)
++++.+.+.+.+.-++.-|++..|..-|-..+.+|+. +.+.+ -+.++|..|++++.+..
T Consensus 32 qd~telfFkiKktT~f~klm~af~~rqGK~m~slRfL-~dG~r-----I~~dqTP~dldmEdnd~ 90 (103)
T COG5227 32 QDGTELFFKIKKTTTFKKLMDAFSRRQGKNMSSLRFL-FDGKR-----IDLDQTPGDLDMEDNDE 90 (103)
T ss_pred CCCCEEEEEEeccchHHHHHHHHHHHhCcCcceeEEE-Eccee-----cCCCCChhhcCCccchH
Confidence 6678899999999999999999999999999899887 43322 24468888888776654
No 121
>cd01615 CIDE_N CIDE_N domain, found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins, as well as CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of ICAD/DFF45, and the CAD/DFF40 and CIDE nucleases during apoptosis. The CIDE-N domain is also found in the FSP27/CIDE-C protein.
Probab=30.31 E-value=1.2e+02 Score=26.77 Aligned_cols=59 Identities=17% Similarity=0.155 Sum_probs=36.8
Q ss_pred cCCcHHHHHHHHHhhcCCCCCceEEEEecCCccccccccccccccccccCCCCeEEEEEeecCccc
Q 002523 217 LEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQVHGFSD 282 (912)
Q Consensus 217 k~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k~dG~W~ 282 (912)
-+.++.+|+.++|+.|+++...++|.-...++ ..++. . -...-+.++.++-...+-+|.
T Consensus 19 ~A~sL~eL~~K~~~~l~l~~~~~~lvL~eDGT---eVddE-e---YF~tLp~nT~l~~l~~gq~W~ 77 (78)
T cd01615 19 AASSLEELLSKACEKLKLPSAPVTLVLEEDGT---EVDDE-E---YFQTLPDNTVLMLLEPGQKWT 77 (78)
T ss_pred EcCCHHHHHHHHHHHcCCCCCCeEEEEeCCCc---EEccH-H---HHhcCCCCcEEEEECCCCCcC
Confidence 37789999999999999987788888554332 12111 1 111223455555555666674
No 122
>cd01787 GRB7_RA RA (RAS-associated like) domain of Grb7. Grb7_RA The RA (RAS-associated like) domain of Grb7. Grb7 is an adaptor molecule that mediates signal transduction from multiple cell surface receptors to various downstream signaling pathways. Grb7 and its related family members Grb10 and Grb14 share a conserved domain architecture that includes an amino-terminal proline-rich region, a central segment termed the GM region (for Grb and Mig) which includes the RA, PIR, and PH domains, and a carboxyl-terminal SH2 domain. Grb7/10/14 family proteins are phosphorylated on serine/threonine as well as tyrosine residues and are mainly localized to the cytoplasm.
Probab=28.57 E-value=2.4e+02 Score=25.21 Aligned_cols=59 Identities=19% Similarity=0.256 Sum_probs=47.0
Q ss_pred eEEEEEcCCCCCCCeeeEEEeCCCCCHHHHHHHHHhhcCCCCCCcEEEEEEecc-eeeeeccCC
Q 002523 526 MTVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALSTKCFLRNHEKLLVAEIYRS-KIFRVLDEP 588 (912)
Q Consensus 526 ~~v~~~~~d~~~~p~~~~v~v~k~~~~~~l~~~l~~~~~~~~~~~l~~~ei~~~-~i~~~~~~~ 588 (912)
.-|.++..||+. ..+.+....+..++++.|..+..........++|.+-. .+-+.|+|.
T Consensus 3 ~vvkv~~~Dg~s----K~l~V~~~~Ta~dV~~~L~~K~h~~~~~~W~LvE~~P~l~lER~~EDH 62 (85)
T cd01787 3 QVVKVYSEDGAS----KSLEVDERMTARDVCQLLVDKNHCQDDSSWTLVEHLPHLQLERLFEDH 62 (85)
T ss_pred eEEEEEecCCCe----eEEEEcCCCcHHHHHHHHHHHhCCCCCCCeEEEEecchhhhhhhccch
Confidence 346778888876 46788999999999999999999998999999887643 566666653
No 123
>PF15499 Peptidase_C98: Ubiquitin-specific peptidase-like, SUMO isopeptidase
Probab=28.01 E-value=2.4e+02 Score=30.50 Aligned_cols=28 Identities=14% Similarity=0.402 Sum_probs=24.7
Q ss_pred ccCCCcchHHHHHHHHhCChHHHHHHHh
Q 002523 343 RNLGNTCFMNSAIQCLAHTPEIVDYFLG 370 (912)
Q Consensus 343 ~NlGNTCYmNSvLQ~L~~~p~f~~~ll~ 370 (912)
.|--|-|.+-++|=+|.|+..++...-+
T Consensus 6 ~N~~aLCWLDciLsaLVh~~~Lk~~~~~ 33 (275)
T PF15499_consen 6 KNSNALCWLDCILSALVHLESLKNAVTE 33 (275)
T ss_pred cCccccHHHHHHHHHHHHHHHHHHHHhh
Confidence 4778899999999999999999997743
No 124
>smart00266 CAD Domains present in proteins implicated in post-mortem DNA fragmentation.
Probab=27.98 E-value=1.3e+02 Score=26.11 Aligned_cols=29 Identities=7% Similarity=0.064 Sum_probs=24.9
Q ss_pred cCCcHHHHHHHHHhhcCCCCCceEEEEec
Q 002523 217 LEDNKVDLYKRACNLFISVSEMLYIWDFS 245 (912)
Q Consensus 217 k~~ti~eL~~~v~~lf~i~~e~~RLW~~~ 245 (912)
-+.++.+|+.++|..|+++...++|.-..
T Consensus 17 ~A~sL~eL~~K~~~~l~l~~~~~~l~L~e 45 (74)
T smart00266 17 AASSLEELLSKVCDKLALPDSPVTLVLEE 45 (74)
T ss_pred EcCCHHHHHHHHHHHhCCCCCCcEEEEec
Confidence 37889999999999999998788888553
No 125
>KOG1871 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=27.79 E-value=29 Score=39.27 Aligned_cols=34 Identities=24% Similarity=0.224 Sum_probs=30.1
Q ss_pred ccccccccccCCCcchHHHHHHHHhCChHHHHHH
Q 002523 335 CLLGLTGLRNLGNTCFMNSAIQCLAHTPEIVDYF 368 (912)
Q Consensus 335 ~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~l 368 (912)
...-++|+.|.||-|+.+|..|.+.+..++...+
T Consensus 174 ~e~t~~~~i~~~n~~n~~s~~e~~~~~~~~~~~~ 207 (420)
T KOG1871|consen 174 DEFTPRGLINNGNLCNLDSTEEAGLSESSGVQLL 207 (420)
T ss_pred ccccccccccccccccccchhhcccccCchhhhc
Confidence 3457899999999999999999999999998755
No 126
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=27.68 E-value=3.1e+02 Score=23.85 Aligned_cols=61 Identities=21% Similarity=0.165 Sum_probs=43.0
Q ss_pred EEEEcCCCCCCCeeeEEEeCCCCCHHHHHHHHHhhcCC-CCCCcEEEEE-EecceeeeeccCC
Q 002523 528 VTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALSTKCFL-RNHEKLLVAE-IYRSKIFRVLDEP 588 (912)
Q Consensus 528 v~~~~~d~~~~p~~~~v~v~k~~~~~~l~~~l~~~~~~-~~~~~l~~~e-i~~~~i~~~~~~~ 588 (912)
+.|+..++.....-.++.+++..+..+++.++.+.+++ .++....+++ ...+..-+.+.+.
T Consensus 5 lrVy~~~~~~~~~~k~i~v~~~tTa~evi~~~l~k~~l~~~~~~y~L~~~~~~~~~er~L~~~ 67 (93)
T PF00788_consen 5 LRVYDGDGSPGSTYKTIKVSSSTTAREVIEMALEKFGLAEDPSDYCLVEVEESGGEERPLDDD 67 (93)
T ss_dssp EEEEETTSSSCCSEEEEEEETTSBHHHHHHHHHHHTTTSSSGGGEEEEEEECTTTEEEEETTT
T ss_pred EEEEcCCCCCCccEEEEEECCCCCHHHHHHHHHHHhCCCCCCCCEEEEEEEcCCCEEEEcCCC
Confidence 45555566544445678899999999999999999999 6667777763 3444555566543
No 127
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=27.08 E-value=2.2e+02 Score=24.44 Aligned_cols=42 Identities=10% Similarity=0.079 Sum_probs=33.7
Q ss_pred EEEEeeecCCCeEEEEEccCCcHHHHHHHHHhhcCCCCCceEEE
Q 002523 199 QIRLSVSQETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIW 242 (912)
Q Consensus 199 ~lkl~~~~d~~~~~i~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW 242 (912)
.+|+. .++....+.+....+..+|..++.+.|+++.+.++|.
T Consensus 3 ~vK~~--~~~~~~~~~~~~~~s~~dL~~~i~~~~~~~~~~~~l~ 44 (81)
T smart00666 3 DVKLR--YGGETRRLSVPRDISFEDLRSKVAKRFGLDNQSFTLK 44 (81)
T ss_pred cEEEE--ECCEEEEEEECCCCCHHHHHHHHHHHhCCCCCCeEEE
Confidence 34543 3456778888899999999999999999987778776
No 128
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=26.47 E-value=79 Score=34.12 Aligned_cols=63 Identities=11% Similarity=0.027 Sum_probs=44.2
Q ss_pred EEEEccCCcHHHHHHHHHhhcCCCCC-ceEEEEecCCccccccccccccccccccCCCCeEEEEE
Q 002523 212 LVKISLEDNKVDLYKRACNLFISVSE-MLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQL 275 (912)
Q Consensus 212 ~i~~Sk~~ti~eL~~~v~~lf~i~~e-~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~ 275 (912)
.+.+++.+++.++...++++.|+|++ .+.+|.-...+....+ +...++..+.+.+|..|.++.
T Consensus 88 h~~v~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEi~~~~ie~i-~~~~t~~~~el~~GdIi~fQ~ 151 (249)
T PF12436_consen 88 HVYVPKNDKVSELVPLINERAGLPPDTPLLLYEEIKPNMIEPI-DPNQTFEKAELQDGDIICFQR 151 (249)
T ss_dssp EEEEETT-BGGGTHHHHHHHHT--TT--EEEEEEEETTEEEE---SSSBHHHTT--TTEEEEEEE
T ss_pred EEEECCCCCHHHHHHHHHHHcCCCCCCceEEEEEeccceeeEc-CCCCchhhcccCCCCEEEEEe
Confidence 46789999999999999999999875 6888755444444555 556899999999998888883
No 129
>PF09855 DUF2082: Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082); InterPro: IPR018652 This family of proteins contains various hypothetical prokaryotic proteins as well as some Zn-ribbon nucleic-acid-binding proteins.
Probab=26.31 E-value=59 Score=27.43 Aligned_cols=34 Identities=21% Similarity=0.422 Sum_probs=21.7
Q ss_pred CCCCCcccccceEEEEEeec--CCceeEEEEeeeEE
Q 002523 809 WYCPRCKKHWQASKKLDLWR--SPDILVIHLKRFSF 842 (912)
Q Consensus 809 wyC~~Ck~~~~AtKk~~l~~--lP~iLiIHLKRF~~ 842 (912)
|.||+|+...--.+.+.... +-.++=|+.+||..
T Consensus 1 y~C~KCg~~~~e~~~v~~tgg~~skiFdvq~~~f~~ 36 (64)
T PF09855_consen 1 YKCPKCGNEEYESGEVRATGGGLSKIFDVQNKKFTT 36 (64)
T ss_pred CCCCCCCCcceecceEEccCCeeEEEEEecCcEEEE
Confidence 78999987654444444321 23467778888864
No 130
>smart00314 RA Ras association (RalGDS/AF-6) domain. RasGTP effectors (in cases of AF6, canoe and RalGDS); putative RasGTP effectors in other cases. Kalhammer et al. have shown that not all RA domains bind RasGTP. Predicted structure similar to that determined, and that of the RasGTP-binding domain of Raf kinase. Predicted RA domains in PLC210 and nore1 found to bind RasGTP. Included outliers (Grb7, Grb14, adenylyl cyclases etc.)
Probab=25.62 E-value=3.2e+02 Score=24.03 Aligned_cols=39 Identities=10% Similarity=0.079 Sum_probs=32.9
Q ss_pred CCCeEEEEEccCCcHHHHHHHHHhhcCCCC--CceEEEEec
Q 002523 207 ETNSLLVKISLEDNKVDLYKRACNLFISVS--EMLYIWDFS 245 (912)
Q Consensus 207 d~~~~~i~~Sk~~ti~eL~~~v~~lf~i~~--e~~RLW~~~ 245 (912)
+...+++.+++..|..++...+.+.++++. ++..|+...
T Consensus 14 ~~~~kti~v~~~tTa~~Vi~~~l~k~~l~~~~~~y~L~e~~ 54 (90)
T smart00314 14 GGTYKTLRVSSRTTARDVIQQLLEKFHLTDDPEEYVLVEVL 54 (90)
T ss_pred CCcEEEEEECCCCCHHHHHHHHHHHhCCCCCcccEEEEEEe
Confidence 466799999999999999999999999985 466676554
No 131
>KOG1867 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=25.47 E-value=28 Score=41.36 Aligned_cols=103 Identities=17% Similarity=0.141 Sum_probs=53.3
Q ss_pred cccccccccCCCcchHHHHHHHHhCChHHHHHHHhh----cccccccCCCCCCchHHHHHHHHHHHHhcCC-CCCccChH
Q 002523 336 LLGLTGLRNLGNTCFMNSAIQCLAHTPEIVDYFLGD----YQKEINYENPLGLNGELALAFGDLLRKLWAP-GGIPVAPR 410 (912)
Q Consensus 336 ~~g~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~ll~~----~~~~~~~~n~l~~~~~l~~~l~~L~~~l~~~-~~~~i~P~ 410 (912)
..-..|+.+.+|||+||+.+|.++.++.|.-..-.. ...... . + ...-....+..+...+-.. ......|.
T Consensus 74 ~~~~~~~~~~~~~~~~~~g~~~~~~c~~~i~~~~~~~~~~~~~~~~-~-~--~~~~~~~~~~~~~~~~~~~~t~~~~~~~ 149 (492)
T KOG1867|consen 74 KLEHSGNKKHNNTIDVNNGLLYCFACPDFIYDAELLKLADIKKYKE-Q-P--FHQLDSTLLTHLAEATVCQQTLLKENPK 149 (492)
T ss_pred cccccccccccccceeehhhheeccCCcEeeccchhhHHHHHhhhc-c-c--hhhccchhhhhhhhhhccchhcccCCcc
Confidence 346688999999999999999999999775432110 000000 0 0 0000011111111111110 01111222
Q ss_pred HHHHHHhhhCCCCCCCCcCCHHHHHHHHHHHHH
Q 002523 411 MFKLKLANFAPQFSGYNQHDSQEFLAFLLDGLH 443 (912)
Q Consensus 411 ~~~~~l~~~~~~F~~~~QqDA~EfL~~LLd~L~ 443 (912)
.........-.+.+..-+++.+|+..+|..|.
T Consensus 150 -~~~~~~~~~~~l~g~~n~g~tcfmn~ilqsl~ 181 (492)
T KOG1867|consen 150 -DRLVLSTTALGLRGLRNLGSTCFMNVILQSLL 181 (492)
T ss_pred -cccccceeeecccccccccHHHHHHHHHHHhh
Confidence 11122223345677889999999999999886
No 132
>cd06535 CIDE_N_CAD CIDE_N domain of CAD nuclease. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and the release of active DFF40/CAD nuclease.
Probab=25.35 E-value=1.5e+02 Score=25.92 Aligned_cols=58 Identities=12% Similarity=0.127 Sum_probs=37.5
Q ss_pred cCCcHHHHHHHHHhhcCCCCCceEEEEecCCccccccccccccccccccCCCCeEEEEEeecCccc
Q 002523 217 LEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQVHGFSD 282 (912)
Q Consensus 217 k~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k~dG~W~ 282 (912)
-+.++.+|+.++|+.|.++...++|.-....+.- -++--++| +++++++-...+-+|.
T Consensus 19 ~A~sL~eL~~K~~~~l~l~~~~~~l~L~eDGTeV--tEeyF~tL------p~nT~lmvL~~gq~W~ 76 (77)
T cd06535 19 AAKNLKELLRKGCRLLQLPCAGSRLCLYEDGTEV--TEEYFPTL------PDNTELVLLTPGQSWQ 76 (77)
T ss_pred EcCCHHHHHHHHHHHhCCCCCCcEEEEecCCcEe--hHHHHhcC------CCCcEEEEEcCCCccC
Confidence 3788999999999999999877888755443321 12222333 3455665555666673
No 133
>cd01816 Raf_RBD Ubiquitin domain of Raf serine/threonine kinases. The Raf serine/threonine kinases are composed of three conserved regions, CR1, CR2 and CR3. CR1 has two Ras binding domains (RBD and CRD), CR2 is a serine/threonine rich domain and CR3 is the catalytic kinase domain. The RBD of Raf is structurally similar to ubiquitin with little of no sequence similarity.The Raf signalling pathway plays an important role in the proliferation and survival of tumor cells.
Probab=24.94 E-value=4.5e+02 Score=22.93 Aligned_cols=67 Identities=16% Similarity=0.141 Sum_probs=46.8
Q ss_pred cCCCeEEEEEccCCcHHHHHHHHHhhcCCCCCceEEEEecCCccccccccccccccccccCCCCeEEEEE
Q 002523 206 QETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQL 275 (912)
Q Consensus 206 ~d~~~~~i~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~ 275 (912)
++++...+.+-...++.+-..++.+.-++.++-+.++...+.+.....-+.+ .+++.-.|.++.+|+
T Consensus 7 PnqQrT~V~vrpG~tl~daL~KaLk~R~l~pe~C~V~~~~~~~~~~~~i~W~---td~~~L~geEL~V~~ 73 (74)
T cd01816 7 PNKQRTVVNVRPGMTLRDALAKALKVRGLQPECCAVFRLGDGSSKKLRIDWD---TDISSLIGEELQVEV 73 (74)
T ss_pred CCCCeEEEEecCCcCHHHHHHHHHHHcCCChhHeEEEEcCCCcccccccchh---hhhhhccCceEEEEe
Confidence 6777788999999999999999999999999999998764332211122221 233344566777764
No 134
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=24.78 E-value=1.3e+02 Score=32.55 Aligned_cols=49 Identities=8% Similarity=0.099 Sum_probs=33.2
Q ss_pred eEEEEee--ecCCCeEEEEEccCCcHHHHHHHHHhhcCCCCCceEEEEecC
Q 002523 198 LQIRLSV--SQETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSG 246 (912)
Q Consensus 198 l~lkl~~--~~d~~~~~i~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~~~~ 246 (912)
+.++++. .++....++.+|+..|-.+|-+.|-+.++++++.+|+|..+.
T Consensus 177 v~V~f~~~~~~~~~~F~l~ls~~~tY~~la~~Va~~l~~dP~~lr~~~~~~ 227 (249)
T PF12436_consen 177 VEVEFKPKDNPNDPEFTLWLSKKMTYDQLAEKVAEHLNVDPEHLRFFTVNP 227 (249)
T ss_dssp EEEEEEETTSTT---EEEEEETT--HHHHHHHHHHHHTS-GGGEEEE---T
T ss_pred EEEEEEECCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEEecc
Confidence 4444444 233457899999999999999999999999999999997754
No 135
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=24.25 E-value=4.6e+02 Score=26.51 Aligned_cols=49 Identities=10% Similarity=0.131 Sum_probs=38.1
Q ss_pred eeEEEEeeecCCCeEEEEEccCCcHHHHHHHHHhhcCCCC-CceEEEEecC
Q 002523 197 PLQIRLSVSQETNSLLVKISLEDNKVDLYKRACNLFISVS-EMLYIWDFSG 246 (912)
Q Consensus 197 Pl~lkl~~~~d~~~~~i~~Sk~~ti~eL~~~v~~lf~i~~-e~~RLW~~~~ 246 (912)
|..++|.. .|+....+.+....|+.++.+.+|+.++|.. +-.-||-...
T Consensus 3 ~~~~~V~l-~dg~~~~~~~~~~~t~~ev~~~v~~~~~l~~~~~F~L~~~~~ 52 (207)
T smart00295 3 PRVLKVYL-LDGTTLEFEVDSSTTAEELLETVCRKLGIRESEYFGLQFEDP 52 (207)
T ss_pred cEEEEEEe-cCCCEEEEEECCCCCHHHHHHHHHHHhCCCccceeEEEEEcC
Confidence 45666654 5667789999999999999999999999965 3467775543
No 136
>cd01779 Myosin_IXb_RA ubitquitin-like domain of Myosin_IXb_RA. Myosin_IXb_RA RasGTP binding domain from guanine nucleotide exchange factors. In some proteins the domain acts as a RasGTP effector (AF6, canoe and RalGDS, for example), but in other cases it may not bind to RasGTP at all.
Probab=23.07 E-value=5.4e+02 Score=23.54 Aligned_cols=58 Identities=17% Similarity=0.094 Sum_probs=44.0
Q ss_pred EEEEcCCCCCCCeeeEEEeCCCCCHHHHHHHHHhhcCCCCCCcEEEEEEecceeeeec
Q 002523 528 VTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALSTKCFLRNHEKLLVAEIYRSKIFRVL 585 (912)
Q Consensus 528 v~~~~~d~~~~p~~~~v~v~k~~~~~~l~~~l~~~~~~~~~~~l~~~ei~~~~i~~~~ 585 (912)
+-+.|......++-+.|...|+.|-.++++.+-...++......+++||....-..+.
T Consensus 13 l~IyP~~~a~~~~~C~v~a~k~sTAa~VI~~~i~~L~Ld~tk~YvLaEVkEsGgEEwv 70 (105)
T cd01779 13 LHIYPQLIAESTISCRVTATKDSTAADVIDDVIASLQLDGTKCYVLAEVKESGGEEWV 70 (105)
T ss_pred EEEccCCCCCCceEeEeEeccCCcHHHHHHHHHHHhCcCccccEEEEEeeccCCeeee
Confidence 3444444444566677899999999999999999999999999999999766444433
No 137
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=22.86 E-value=4.6e+02 Score=22.46 Aligned_cols=67 Identities=18% Similarity=0.128 Sum_probs=39.4
Q ss_pred EEEEEcCCCCCCCeeeEEEeCCCCCHHHHHHHHHhhcCCCCCCcEEEEEEecceeeeeccCCcccc--cccCCCCcEEEE
Q 002523 527 TVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALSTKCFLRNHEKLLVAEIYRSKIFRVLDEPSDLL--GLIRDEDKLVAY 604 (912)
Q Consensus 527 ~v~~~~~d~~~~p~~~~v~v~k~~~~~~l~~~l~~~~~~~~~~~l~~~ei~~~~i~~~~~~~~~~~--~~i~~~d~i~~y 604 (912)
.+++....|. ...+.++...++.+|++.++...+++.....+ + |..+ .+.|.. .+ -.|.++..|..|
T Consensus 3 ~i~vkt~~Gk----~~~~~v~~~~TV~~LK~~I~~~~~~~~~~qrL-i--~~Gk---~L~D~~-tL~~ygi~~~stv~l~ 71 (73)
T cd01791 3 EVVCNDRLGK----KVRVKCNPDDTIGDLKKLIAAQTGTRPEKIVL-K--KWYT---IFKDHI-SLGDYEIHDGMNLELY 71 (73)
T ss_pred EEEEECCCCC----EEEEEeCCCCcHHHHHHHHHHHhCCChHHEEE-E--eCCc---CCCCCC-CHHHcCCCCCCEEEEE
Confidence 4445444443 35567888999999999999988876544333 2 4433 354422 22 235555555544
No 138
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=22.42 E-value=3.5e+02 Score=22.22 Aligned_cols=39 Identities=21% Similarity=0.320 Sum_probs=29.8
Q ss_pred eeEEEeCCCCCHHHHHHHHHhhcCCCCCCcEEEEEEecceee
Q 002523 541 PFTVTVPKYGRFQDLIDALSTKCFLRNHEKLLVAEIYRSKIF 582 (912)
Q Consensus 541 ~~~v~v~k~~~~~~l~~~l~~~~~~~~~~~l~~~ei~~~~i~ 582 (912)
.+.+.++...++.+|++.++...+++.....++ |+.+..
T Consensus 7 ~~~~~v~~~~tV~~lK~~i~~~~~~~~~~~~L~---~~G~~L 45 (69)
T PF00240_consen 7 TFTLEVDPDDTVADLKQKIAEETGIPPEQQRLI---YNGKEL 45 (69)
T ss_dssp EEEEEEETTSBHHHHHHHHHHHHTSTGGGEEEE---ETTEEE
T ss_pred EEEEEECCCCCHHHhhhhcccccccccccceee---eeeecc
Confidence 467888999999999999999999876554442 455543
No 139
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=21.74 E-value=3.2e+02 Score=23.58 Aligned_cols=40 Identities=23% Similarity=0.392 Sum_probs=29.1
Q ss_pred eEEEEEcCCCCCCCeeeEEEeCCCCCHHHHHHHHHhhcCCCCCC
Q 002523 526 MTVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALSTKCFLRNHE 569 (912)
Q Consensus 526 ~~v~~~~~d~~~~p~~~~v~v~k~~~~~~l~~~l~~~~~~~~~~ 569 (912)
+.+++-...|.. ..+.++...++.+|++.+++..++....
T Consensus 2 m~I~Vk~~~G~~----~~l~v~~~~TV~~LK~~I~~~~~~~~~~ 41 (78)
T cd01804 2 MNLNIHSTTGTR----FDLSVPPDETVEGLKKRISQRLKVPKER 41 (78)
T ss_pred eEEEEEECCCCE----EEEEECCcCHHHHHHHHHHHHhCCChHH
Confidence 345555555542 6688899999999999999988876543
No 140
>KOG1870 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=21.63 E-value=52 Score=41.97 Aligned_cols=104 Identities=14% Similarity=0.070 Sum_probs=75.7
Q ss_pred CccCHHHHHHHhhCcccCCCCCCCCCCCcccccceEEEEEeecCCceeEEEEeeeEEcCceecccceEEecCCCCCCCCc
Q 002523 786 ESVSLYKCLEAFLKEEPLGPEDMWYCPRCKKHWQASKKLDLWRSPDILVIHLKRFSFSRYFKSKLDTYVDFPIDDLDLSN 865 (912)
Q Consensus 786 ~~isL~dCL~~F~~~E~L~~~d~wyC~~Ck~~~~AtKk~~l~~lP~iLiIHLKRF~~~~~~~~Ki~~~V~FPi~~LDls~ 865 (912)
..-.+.+|+..|+....+..+...-|+.|.....-. ...-. .+++|+..|+........+....+.+|+.++.+-.
T Consensus 480 ~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~ 555 (842)
T KOG1870|consen 480 PVEILFDCFNKIFAADELKLDSIYSDEELFDYELGV--LKVQG--SIYAIIVVRFRSRLPRSKGIRSHVSSKLFGLPLLV 555 (842)
T ss_pred cceeccchhhhhhccCccccccccCCcceEEeeccc--ccccc--cceEEEEEeeccccccccCcccCCCccccCCccee
Confidence 345688999999999886667777788776543221 11111 16888888888665555677788999988888877
Q ss_pred ccccCCCCCCccEEEEEEEEeeecCCCceE
Q 002523 866 YVCCKNSQLSNRYVLYAISNHYGGMGGGHY 895 (912)
Q Consensus 866 ~v~~~~~~~~~~YdL~AVinH~G~l~gGHY 895 (912)
++... .....++|..+++|.++...||+
T Consensus 556 ~~~~~--~~~t~~~l~~~~~~~~s~~~~~~ 583 (842)
T KOG1870|consen 556 SVLSG--AQSTEEDLLSVICHRTSRYSREP 583 (842)
T ss_pred eccCC--CcccccchhhHHhhcccccCCcC
Confidence 76653 25578999999999998888886
No 141
>PF14205 Cys_rich_KTR: Cysteine-rich KTR
Probab=21.45 E-value=42 Score=27.20 Aligned_cols=12 Identities=42% Similarity=0.974 Sum_probs=9.4
Q ss_pred CCCCCCCccccc
Q 002523 807 DMWYCPRCKKHW 818 (912)
Q Consensus 807 d~wyC~~Ck~~~ 818 (912)
=+.|||+||+..
T Consensus 27 fPlyCpKCK~Et 38 (55)
T PF14205_consen 27 FPLYCPKCKQET 38 (55)
T ss_pred ccccCCCCCceE
Confidence 357999998764
No 142
>cd01782 AF6_RA_repeat1 Ubiquitin domain of AT-6, first repeat. The AF-6 protein (also known as afadin and canoe) is a multidomain cell junction protein that contains two N-terminal Ras-associating (RA) domains in addition to FHA (forkhead-associated), DIL (class V myosin homology region), and PDZ domains and a proline-rich region. AF6 acts downstream of the Egfr (Epidermal Growth Factor-receptor)/Ras signalling pathway and provides a link from Egfr to cytoskeletal elements.
Probab=21.06 E-value=5.1e+02 Score=24.30 Aligned_cols=72 Identities=22% Similarity=0.208 Sum_probs=45.1
Q ss_pred ecCCCCCccceEE-EEEcCCCCCCCeeeEEEeCCCCCHHHHHHHHHhhcCCC----CCCcEEEEEEecceeeeeccC
Q 002523 516 LPIPSTTMRTMTV-TVLSTDGSTMPAPFTVTVPKYGRFQDLIDALSTKCFLR----NHEKLLVAEIYRSKIFRVLDE 587 (912)
Q Consensus 516 L~Ip~~~~~~~~v-~~~~~d~~~~p~~~~v~v~k~~~~~~l~~~l~~~~~~~----~~~~l~~~ei~~~~i~~~~~~ 587 (912)
|..|.+.-...-| .++..|+..+-..-.|.|....+..+++++|-+++.+. ++.+..+.++..+.-.+-+.+
T Consensus 11 ~s~p~e~lef~gvmrf~~qd~~~k~atK~VrVsS~~tt~eVI~~LLeKFk~d~~~~s~p~FALYevh~nGe~RKL~d 87 (112)
T cd01782 11 LSYPTEDLEFHGVMRFYFQDGGEKVATKCIRVSSTATTRDVIDTLSEKFRPDMRMLSNPTYSLYEVHENGEERRLLD 87 (112)
T ss_pred ecCCCcccEEeeEEEEEEEcCCCcEEEEEEEEecCCCHHHHHHHHHHHhcccccccCCcceEEEEEecCCceEEcCC
Confidence 4445443322222 34445555566667889999999999999999888732 344777777765544444443
No 143
>cd01775 CYR1_RA Ubiquitin domain of CYR1 adenylate cyclase. CYR1 is a fungal adenylate cyclase with at least four domains, an N-terminal RA (Ras association) domain, a middle leucine-rich repeat domain, a catalytic domain. The N-terminal RA domain of CYR1 post-translationally modifies a small GTPase called Ras. The Ras-CYR1 pathway has been implicated in the transduction of a glucose-triggered signal to an intracellular environment where a protein phosphorylation cascade is initiated by cyclic AMP.
Probab=20.19 E-value=4.8e+02 Score=23.99 Aligned_cols=48 Identities=13% Similarity=0.014 Sum_probs=38.1
Q ss_pred eeEEEEeeecCCCeEEEEEccCCcHHHHHHHHHhhcCCCC-CceEEEEec
Q 002523 197 PLQIRLSVSQETNSLLVKISLEDNKVDLYKRACNLFISVS-EMLYIWDFS 245 (912)
Q Consensus 197 Pl~lkl~~~~d~~~~~i~~Sk~~ti~eL~~~v~~lf~i~~-e~~RLW~~~ 245 (912)
|..++|+. .|+...++......|+.|+..++.+.+.++. .+.+|.-..
T Consensus 2 ~y~IRIFr-~D~Tf~Tls~~l~tTv~eli~~L~rK~~l~~~~ny~l~l~~ 50 (97)
T cd01775 2 SYCIRVFR-SDGTFTTLSCPLNTTVSELIPQLAKKFYLPSGGNYQLSLKK 50 (97)
T ss_pred ceEEEEEe-cCCcEEEEEcCCcCcHHHHHHHHHHhhcCCCCCCeEEEEEE
Confidence 34677765 5566789999999999999999999999987 567777543
No 144
>PF13019 Telomere_Sde2: Telomere stability and silencing
Probab=20.09 E-value=5.2e+02 Score=26.05 Aligned_cols=54 Identities=26% Similarity=0.384 Sum_probs=40.9
Q ss_pred EEEEEcCCCCCCCeeeEEEeCCCCCHHHHHHHHHhhcCCCCCCcEEEEEEecce
Q 002523 527 TVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALSTKCFLRNHEKLLVAEIYRSK 580 (912)
Q Consensus 527 ~v~~~~~d~~~~p~~~~v~v~k~~~~~~l~~~l~~~~~~~~~~~l~~~ei~~~~ 580 (912)
.|.+-..+|...|..+.+.++...++.+|...+....++.....++++-..+..
T Consensus 2 ~Vlvss~~g~~lp~tl~~~lp~~ttv~dL~~~l~~~~~~~~~~~~~L~~~~n~~ 55 (162)
T PF13019_consen 2 NVLVSSFDGLTLPPTLSLSLPSTTTVSDLKDRLSERLPIPSSSQLYLTTNSNGQ 55 (162)
T ss_pred eEEEecCCCCCCCCeEEeeCCCCCcHHHHHHHHHhhcCCCccceeEEEEeCCCe
Confidence 455666677777888889999999999999999999988776655444444433
Done!