Query 002523
Match_columns 912
No_of_seqs 342 out of 2034
Neff 7.2
Searched_HMMs 29240
Date Tue Mar 26 16:12:08 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002523.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1243-1247//hhsearch_pdb/002523hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2y6e_A Ubiquitin carboxyl-term 1.0 1 1 576.4 31.3 326 335-908 4-333 (367)
2 2gfo_A Ubiquitin carboxyl-term 1.0 1 1 551.2 27.9 309 335-908 58-370 (396)
3 3nhe_A Ubiquitin carboxyl-term 1.0 1 1 502.7 30.5 308 335-908 5-317 (348)
4 3i3t_A Ubiquitin carboxyl-term 1.0 1 1 498.1 27.4 306 338-908 2-325 (355)
5 3ihp_A Ubiquitin carboxyl-term 1.0 1 1 466.9 25.1 266 333-869 338-624 (854)
6 1nb8_A Ubiquitin carboxyl-term 1.0 1 1 459.9 25.4 267 336-908 3-274 (353)
7 2ayn_A Ubiquitin carboxyl-term 1.0 1 1 459.0 20.4 290 336-908 11-361 (404)
8 2f1z_A Ubiquitin carboxyl-term 1.0 1 1 458.9 26.0 270 333-908 169-443 (522)
9 3mhs_A Ubiquitin carboxyl-term 1.0 1 1 453.7 26.1 288 334-908 136-448 (476)
10 1vjv_A Ubiquitin carboxyl-term 1.0 1 1 437.5 24.3 269 334-908 19-381 (415)
No 1
>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens}
Probab=1.00 E-value=1 Score=576.36 Aligned_cols=326 Identities=57% Similarity=1.014 Sum_probs=294.1
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHH
Q ss_conf 5665333214899620799999994784799999731-012234579999815899999999987228999865829999
Q 002523 335 CLLGLTGLRNLGNTCFMNSAIQCLAHTPEIVDYFLGD-YQKEINYENPLGLNGELALAFGDLLRKLWAPGGIPVAPRMFK 413 (912)
Q Consensus 335 ~~~g~~GL~NlGNTCYmNS~LQ~L~~~p~l~~~ll~~-~~~~~n~~n~~~~~~~l~~~l~~L~~~l~~~~~~~i~P~~~~ 413 (912)
..+|++||.|+||||||||+||||+|+|+|+++|+.. +..+++..++.++.+.++.+|+.|+..||.+...+++|..|+
T Consensus 4 ~~~g~~GL~NlGNTCYmNSvLQ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~i~P~~~~ 83 (367)
T 2y6e_A 4 IQPGLCGLGNLGNTCFMNSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQMWSGRDAHVAPRMFK 83 (367)
T ss_dssp CCTTCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTTCGGGGCCSSCTTSCTTHHHHHHHHHHHHHTSSSCSEECCHHHH
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHH
T ss_conf 89898087648856498999999977799999997372255504469888642999999999999974899873879999
Q ss_pred HHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEE
Q ss_conf 99962189999888677999999999989987320026885322357899858898999983203788621235447999
Q 002523 414 LKLANFAPQFSGYNQHDSQEFLAFLLDGLHEDLNRVKCKPYLEAKDAEGQPEEEVAEEYWRNHRARNDSIIVDLCQGQYR 493 (912)
Q Consensus 414 ~~l~~~~p~F~~~~QqDA~EfL~~LLd~L~eel~~~~~k~~~~~~d~~~~~d~~~a~e~w~~~~~~n~SiI~~lF~G~~~ 493 (912)
.++++..++|.+++||||||||.+|||.||++++++.++|+.+.++..|.++.+.|.+.|..+..++.|+|.++|+|+++
T Consensus 84 ~~l~~~~~~f~~~~QqDA~Efl~~LLd~L~~~l~~~~~~~~~~~~~~~g~~~~~~a~~~w~~~~~~~~s~i~~~F~G~l~ 163 (367)
T 2y6e_A 84 TQVGRFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLELKDANGRPDAVVAKEAWENHRLRNDSVIVDTFHGLFK 163 (367)
T ss_dssp HHHHHHCGGGCSSSCCCHHHHHHHHHHHHHHHTCSCSSCCCCCCCCCCSCCHHHHHHHHHHHHHHHCCSHHHHHHCEEEE
T ss_pred HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEE
T ss_conf 99997404108987878799999999999999875125776445565679606778999999887069823013376884
Q ss_pred EEEECCCCCCEEEEEECCEEEEECCCCCCCCCEEEEEECCCCCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEE
Q ss_conf 89961899984356506422874189998663199999189999770069991788888999999985507899772788
Q 002523 494 SMLVCPVCNKVSVTFDPLMYLSLPIPSTTMRTMTVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALSTKCFLRNHEKLLV 573 (912)
Q Consensus 494 s~l~C~~C~~~s~~~e~F~~LsLpip~~~~~~~~v~~~~~d~~~~p~~~~v~~~k~~~~~dl~~~l~~~~~~~~~~~l~~ 573 (912)
++++|..|+++|.++|||++|+||||....+.+.+.
T Consensus 164 s~~~C~~C~~~s~~~e~f~~LsL~ip~~~~~~~~~~-------------------------------------------- 199 (367)
T 2y6e_A 164 STLVCPECAKVSVTFDPFCYLTLPLPLKKDRVMEGP-------------------------------------------- 199 (367)
T ss_dssp EEEECTTTCCEEEEEEEESSEEEECCC-----------------------------------------------------
T ss_pred EEEEECCCCCEEEEECCCEEEEEECCCCCCCCCEEE--------------------------------------------
T ss_conf 358908999985337567057731798767750133--------------------------------------------
Q ss_pred EEEECCEEEEECCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEEECCCCCCCCCCCCCCEEEECCCEEEECCCCCCH
Q ss_conf 88753602550269743244657899189998389999993277863102111124555555055142248971789986
Q 002523 574 AEIYRSKIFRVLDEPSDLLGLIRDEDKLVAYRLPKDSETPSLVLFMHERKEESCHLGRLSLEWKIFGTPLVGRLSDLTNG 653 (912)
Q Consensus 574 ~e~~~~~~~~~~~~~~~~~~~i~~~d~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~i~~~~~~ 653 (912)
+
T Consensus 200 --~----------------------------------------------------------------------------- 200 (367)
T 2y6e_A 200 --M----------------------------------------------------------------------------- 200 (367)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --E-----------------------------------------------------------------------------
T ss_conf --2-----------------------------------------------------------------------------
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCC
Q ss_conf 68999999861876688899998642237788999642246666557897788987789999989960389844999853
Q 002523 654 SDIRKLFLKLLDPFLMPVGDDSDFSDEAGKIDNGDSIVEDVTSSRVSDNDAVSDSSEAGDEPHLSDDFQFYRLDSIRPTE 733 (912)
Q Consensus 654 ~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 733 (912)
T Consensus 201 -------------------------------------------------------------------------------- 200 (367)
T 2y6e_A 201 -------------------------------------------------------------------------------- 200 (367)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 45688888679999719999437365853323322000000233334589999658999999850866579989889977
Q 002523 734 IKMNEPLSISDFAKPLTIHVQWAEKMIEKYDTCLLSSLMEVCKPQLFTRMPPESVSLYKCLEAFLKEEPLGPEDMWYCPR 813 (912)
Q Consensus 734 ~~~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~isL~dCL~~F~~~E~L~~~d~wyC~~ 813 (912)
|.+. ......++|++||+.|+++|.|+++|.|+|++
T Consensus 201 ---------------------~~~~-----------------------~~~~~~~sL~~~L~~f~~~E~l~~~~~~~C~~ 236 (367)
T 2y6e_A 201 ---------------------LQPQ-----------------------KKKKTTVALRDCIELFTTMETLGEHDPWYCPN 236 (367)
T ss_dssp -----------------------------------------------------CEEHHHHHHHHTSCEECCC-CCEEETT
T ss_pred ---------------------ECCC-----------------------CCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf ---------------------0564-----------------------45678888999999861616478998724878
Q ss_pred CCCCCCEEEEEEEECCCCEEEEEEEEEEECCCEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCC
Q ss_conf 66663027999940189515998854587073001231379568999898864335899999619999999962207996
Q 002523 814 CKKHWQASKKLDLWRSPDILVIHLKRFSFSRYFKSKLDTYVDFPIDDLDLSNYVCCKNSQLSNRYVLYAISNHYGGMGGG 893 (912)
Q Consensus 814 Ck~~~~AtKk~~lw~lP~iLiIHLKRF~~~~~~~~Ki~~~V~FPi~~LDls~~v~~~~~~~~~~YdL~AVinH~G~l~gG 893 (912)
|++++.|+|++.|+++|+|||||||||.|+++.+.|+++.|+||++.|||++|+..+.. .+..|+|+|||+|+|++++|
T Consensus 237 C~~~~~a~K~~~i~~lP~vL~i~LkRF~~~~~~~~K~~~~v~fp~~~Ldl~~~~~~~~~-~~~~Y~L~avv~H~G~~~~G 315 (367)
T 2y6e_A 237 CKKHQQATKKFDLWSLPKILVVHLKRFSYNRYWRDKLDTVVEFPIRGLNMSEFVCNLSA-RPYVYDLIAVSNHYGAMGVG 315 (367)
T ss_dssp TTEEECCEEEEEEEECCSEEEEEEECEEECSSCEEECCCCEECCSSCEECGGGBSCSSS-CCCEEEEEEEEEEECSSSSC
T ss_pred CCCCCEEEEEEEEECCCCEEEEEEECEEECCCCCEECCCEEEECCCCCCHHHHCCCCCC-CCCEEEEEEEEECCCCCCCC
T ss_conf 78875078998882488578999847650576633537638931776775664258788-97148899885628999887
Q ss_pred EEEEEEEEC---CEEEEE
Q ss_conf 289999818---928899
Q 002523 894 HYTAFVDVS---CVYSFH 908 (912)
Q Consensus 894 HYtAy~k~~---~~~~f~ 908 (912)
||+||+|+. .||.||
T Consensus 316 HY~a~~~~~~~~~W~~fn 333 (367)
T 2y6e_A 316 HYTAYAKNKLNGKWYYFD 333 (367)
T ss_dssp EEEEEEECTTTCCEEEEE
T ss_pred EEEEEEECCCCCEEEEEC
T ss_conf 366788769999089977
No 2
>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A
Probab=1.00 E-value=1 Score=551.20 Aligned_cols=309 Identities=44% Similarity=0.844 Sum_probs=285.6
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHH
Q ss_conf 5665333214899620799999994784799999731-012234579999815899999999987228999865829999
Q 002523 335 CLLGLTGLRNLGNTCFMNSAIQCLAHTPEIVDYFLGD-YQKEINYENPLGLNGELALAFGDLLRKLWAPGGIPVAPRMFK 413 (912)
Q Consensus 335 ~~~g~~GL~NlGNTCYmNS~LQ~L~~~p~l~~~ll~~-~~~~~n~~n~~~~~~~l~~~l~~L~~~l~~~~~~~i~P~~~~ 413 (912)
..+|++||.|+||||||||+||||+|+|+|++||+.. +..+++..++++..+.++.+|+.|++.||.+...+++|..|+
T Consensus 58 ~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~i~P~~f~ 137 (396)
T 2gfo_A 58 SGPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEFGIIMKALWTGQYRYISPKDFK 137 (396)
T ss_dssp SSTTCCEECCSSSCHHHHHHHHHHHTCHHHHHHHHTTTHHHHCCTTCTTSCTTHHHHHHHHHHHHHHHSCEEEECCHHHH
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEECHHHHH
T ss_conf 87786665616874167299998537889999997074213312358777410999999999999970998437789999
Q ss_pred HHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEE
Q ss_conf 99962189999888677999999999989987320026885322357899858898999983203788621235447999
Q 002523 414 LKLANFAPQFSGYNQHDSQEFLAFLLDGLHEDLNRVKCKPYLEAKDAEGQPEEEVAEEYWRNHRARNDSIIVDLCQGQYR 493 (912)
Q Consensus 414 ~~l~~~~p~F~~~~QqDA~EfL~~LLd~L~eel~~~~~k~~~~~~d~~~~~d~~~a~e~w~~~~~~n~SiI~~lF~G~~~ 493 (912)
.++++..++|.+++||||||||.+|||.||+++++...+++.+..+.++.++...|++.|..+..++.|+|.++|+|+++
T Consensus 138 ~~l~~~~~~f~~~~QqDA~EFl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~a~~~w~~~~~~~~s~I~~lF~G~l~ 217 (396)
T 2gfo_A 138 ITIGKINDQFAGYSQQDSQELLLFLMDGLHEDLNKADNRKRYKEENNDHLDDFKAAEHAWQKHKQLNESIIVALFQGQFK 217 (396)
T ss_dssp HHHHHHCGGGSSSSCCCHHHHHHHHHHHHHHHHCCCCC---------TTSCHHHHHHHHHHHHHHHCCSHHHHHHCEEEE
T ss_pred HHHHHHCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHCCEEE
T ss_conf 99997454334878877599999999999999865314554455555566425677899987665068834020086887
Q ss_pred EEEECCCCCCEEEEEECCEEEEECCCCCCCCCEEEEEECCCCCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEE
Q ss_conf 89961899984356506422874189998663199999189999770069991788888999999985507899772788
Q 002523 494 SMLVCPVCNKVSVTFDPLMYLSLPIPSTTMRTMTVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALSTKCFLRNHEKLLV 573 (912)
Q Consensus 494 s~l~C~~C~~~s~~~e~F~~LsLpip~~~~~~~~v~~~~~d~~~~p~~~~v~~~k~~~~~dl~~~l~~~~~~~~~~~l~~ 573 (912)
++++|..|++++.++|+|++|+|+||..
T Consensus 218 s~i~C~~C~~~s~~~e~f~~LsL~ip~~---------------------------------------------------- 245 (396)
T 2gfo_A 218 STVQCLTCHKKSRTFEAFMYLSLPLAST---------------------------------------------------- 245 (396)
T ss_dssp EEEEETTTCCEEEEEEEESSEEECCSCS----------------------------------------------------
T ss_pred EEEEECCCCCEECCCCCCEEEEECCCCC----------------------------------------------------
T ss_conf 7788579996203244631233326634----------------------------------------------------
Q ss_pred EEEECCEEEEECCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEEECCCCCCCCCCCCCCEEEECCCEEEECCCCCCH
Q ss_conf 88753602550269743244657899189998389999993277863102111124555555055142248971789986
Q 002523 574 AEIYRSKIFRVLDEPSDLLGLIRDEDKLVAYRLPKDSETPSLVLFMHERKEESCHLGRLSLEWKIFGTPLVGRLSDLTNG 653 (912)
Q Consensus 574 ~e~~~~~~~~~~~~~~~~~~~i~~~d~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~i~~~~~~ 653 (912)
T Consensus 246 -------------------------------------------------------------------------------- 245 (396)
T 2gfo_A 246 -------------------------------------------------------------------------------- 245 (396)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCC
Q ss_conf 68999999861876688899998642237788999642246666557897788987789999989960389844999853
Q 002523 654 SDIRKLFLKLLDPFLMPVGDDSDFSDEAGKIDNGDSIVEDVTSSRVSDNDAVSDSSEAGDEPHLSDDFQFYRLDSIRPTE 733 (912)
Q Consensus 654 ~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 733 (912)
T Consensus 246 -------------------------------------------------------------------------------- 245 (396)
T 2gfo_A 246 -------------------------------------------------------------------------------- 245 (396)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 45688888679999719999437365853323322000000233334589999658999999850866579989889977
Q 002523 734 IKMNEPLSISDFAKPLTIHVQWAEKMIEKYDTCLLSSLMEVCKPQLFTRMPPESVSLYKCLEAFLKEEPLGPEDMWYCPR 813 (912)
Q Consensus 734 ~~~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~isL~dCL~~F~~~E~L~~~d~wyC~~ 813 (912)
..++|++||+.|+++|.|+++|.|+|++
T Consensus 246 ----------------------------------------------------~~~sL~~~L~~f~~~E~l~~~n~~~C~~ 273 (396)
T 2gfo_A 246 ----------------------------------------------------SKCTLQDCLRLFSKEEKLTDNNRFYCSH 273 (396)
T ss_dssp ----------------------------------------------------SEEEHHHHHHHHTSCEEECSTTCEEETT
T ss_pred ----------------------------------------------------CCCCHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf ----------------------------------------------------6579999999837722516876411577
Q ss_pred CCCCCCEEEEEEEECCCCEEEEEEEEEEECCCEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCC
Q ss_conf 66663027999940189515998854587073001231379568999898864335899999619999999962207996
Q 002523 814 CKKHWQASKKLDLWRSPDILVIHLKRFSFSRYFKSKLDTYVDFPIDDLDLSNYVCCKNSQLSNRYVLYAISNHYGGMGGG 893 (912)
Q Consensus 814 Ck~~~~AtKk~~lw~lP~iLiIHLKRF~~~~~~~~Ki~~~V~FPi~~LDls~~v~~~~~~~~~~YdL~AVinH~G~l~gG 893 (912)
|++++.|+|++.|+++|+|||||||||.|+..++.|+++.|.||++.|||++|+..+.. ....|+|+|||+|+|++++|
T Consensus 274 C~~~~~a~k~~~i~~lP~vLiihLkRF~~~~~~~~K~~~~v~fp~~~Ldl~~~~~~~~~-~~~~Y~L~avv~H~G~~~~G 352 (396)
T 2gfo_A 274 CRARRDSLKKIEIWKLPPVLLVHLKRFSYDGRWKQKLQTSVDFPLENLDLSQYVIGPKN-NLKKYNLFSVSNHYGGLDGG 352 (396)
T ss_dssp TTEEECEEEEEEEEECCSEEEEEECCEEECSSSEEECCCEEECCSSCBCCGGGBCSCCS-SCCCBEEEEEEEEESCTTTC
T ss_pred CCCCCCEEEEEEEECCCCEEEEEECCEECCCCCCEECCCEEECCHHHCCCCCCCCCCCC-CCCEEEEEEEEEECCCCCCC
T ss_conf 55545358999980378579998501102576100167448545342456643347777-87358899999856999998
Q ss_pred EEEEEEEEC---CEEEEE
Q ss_conf 289999818---928899
Q 002523 894 HYTAFVDVS---CVYSFH 908 (912)
Q Consensus 894 HYtAy~k~~---~~~~f~ 908 (912)
||+||+|+. .||.||
T Consensus 353 HY~a~v~~~~~~~W~~fn 370 (396)
T 2gfo_A 353 HYTAYCKNAARQRWFKFD 370 (396)
T ss_dssp EEEEEEEETTTTEEEEEE
T ss_pred CEEEEECCCCCCCEEEEE
T ss_conf 307998579999879974
No 3
>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} SCOP: d.3.1.9 PDB: 2hd5_A 3v6c_A 3v6e_A 2ibi_A
Probab=1.00 E-value=1 Score=502.65 Aligned_cols=308 Identities=43% Similarity=0.736 Sum_probs=277.5
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHHHHHHHHHC-CCCCCCCCHHHH
Q ss_conf 5665333214899620799999994784799999731-01223457999981589999999998722-899986582999
Q 002523 335 CLLGLTGLRNLGNTCFMNSAIQCLAHTPEIVDYFLGD-YQKEINYENPLGLNGELALAFGDLLRKLW-APGGIPVAPRMF 412 (912)
Q Consensus 335 ~~~g~~GL~NlGNTCYmNS~LQ~L~~~p~l~~~ll~~-~~~~~n~~n~~~~~~~l~~~l~~L~~~l~-~~~~~~i~P~~~ 412 (912)
..+|++||.|+||||||||+||||+++|+|+++++.. +....+.. ......++.+|+.|+..|| ......++|..|
T Consensus 5 ~~~g~~GL~N~GNtCY~NsvLQ~L~~~~~~r~~~l~~~~~~~~~~~--~~~~~~l~~~l~~l~~~l~~~~~~~~~~p~~~ 82 (348)
T 3nhe_A 5 SAQGLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLHHG--SNAHTALVEEFAKLIQTIWTSSPNDVVSPSEF 82 (348)
T ss_dssp -CCSCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTTGGGGTSCSS--CCTTHHHHHHHHHHHHHHTTCCTTCEECCHHH
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHCCHHHHHHCCC--CCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHH
T ss_conf 8999977875883479889999996679999998524466761468--87311899999999999971789872489999
Q ss_pred HHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEE
Q ss_conf 99996218999988867799999999998998732002688532235789985889899998320378862123544799
Q 002523 413 KLKLANFAPQFSGYNQHDSQEFLAFLLDGLHEDLNRVKCKPYLEAKDAEGQPEEEVAEEYWRNHRARNDSIIVDLCQGQY 492 (912)
Q Consensus 413 ~~~l~~~~p~F~~~~QqDA~EfL~~LLd~L~eel~~~~~k~~~~~~d~~~~~d~~~a~e~w~~~~~~n~SiI~~lF~G~~ 492 (912)
+.+++...++|.+++||||||||.+|||.||+++++...++.....+.++.++.+.+.+.|..+..++.++|.++|+|++
T Consensus 83 ~~~l~~~~~~f~~~~QqDa~Efl~~lLd~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~~F~g~~ 162 (348)
T 3nhe_A 83 KTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVTLRPKSNPENLDHLPDDEKGRQMWRKYLEREDSRIGDLFVGQL 162 (348)
T ss_dssp HHHHHHHSGGGSSSCCBCHHHHHHHHHHHHHHHHCSCSSCCCCCCCCCTTSCHHHHHHHHHHHHHTTCCCHHHHHHCEEE
T ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEE
T ss_conf 99999860640798744799999999999999875304678877522246882277899999987506984555512499
Q ss_pred EEEEECCCCCCEEEEEECCEEEEECCCCCCCCCEEEEEECCCCCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEE
Q ss_conf 98996189998435650642287418999866319999918999977006999178888899999998550789977278
Q 002523 493 RSMLVCPVCNKVSVTFDPLMYLSLPIPSTTMRTMTVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALSTKCFLRNHEKLL 572 (912)
Q Consensus 493 ~s~l~C~~C~~~s~~~e~F~~LsLpip~~~~~~~~v~~~~~d~~~~p~~~~v~~~k~~~~~dl~~~l~~~~~~~~~~~l~ 572 (912)
+++++|..|++++.++|+|++|+||||....
T Consensus 163 ~~~~~C~~C~~~s~~~e~f~~LsL~i~~~~~------------------------------------------------- 193 (348)
T 3nhe_A 163 KSSLTCTDCGYCSTVFDPFWDLSLPIAKRGY------------------------------------------------- 193 (348)
T ss_dssp EEEEEETTTCCEEEEEEEESSEEECCCSSCS-------------------------------------------------
T ss_pred EEEEECCCCCCEEEEECCCEEEEEECCCCCC-------------------------------------------------
T ss_conf 9899948999886444465477642798556-------------------------------------------------
Q ss_pred EEEEECCEEEEECCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEEECCCCCCCCCCCCCCEEEECCCEEEECCCCCC
Q ss_conf 88875360255026974324465789918999838999999327786310211112455555505514224897178998
Q 002523 573 VAEIYRSKIFRVLDEPSDLLGLIRDEDKLVAYRLPKDSETPSLVLFMHERKEESCHLGRLSLEWKIFGTPLVGRLSDLTN 652 (912)
Q Consensus 573 ~~e~~~~~~~~~~~~~~~~~~~i~~~d~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~i~~~~~ 652 (912)
T Consensus 194 -------------------------------------------------------------------------------- 193 (348)
T 3nhe_A 194 -------------------------------------------------------------------------------- 193 (348)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCC
Q ss_conf 66899999986187668889999864223778899964224666655789778898778999998996038984499985
Q 002523 653 GSDIRKLFLKLLDPFLMPVGDDSDFSDEAGKIDNGDSIVEDVTSSRVSDNDAVSDSSEAGDEPHLSDDFQFYRLDSIRPT 732 (912)
Q Consensus 653 ~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 732 (912)
T Consensus 194 -------------------------------------------------------------------------------- 193 (348)
T 3nhe_A 194 -------------------------------------------------------------------------------- 193 (348)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 34568888867999971999943736585332332200000023333458999965899999985086657998988997
Q 002523 733 EIKMNEPLSISDFAKPLTIHVQWAEKMIEKYDTCLLSSLMEVCKPQLFTRMPPESVSLYKCLEAFLKEEPLGPEDMWYCP 812 (912)
Q Consensus 733 ~~~~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~isL~dCL~~F~~~E~L~~~d~wyC~ 812 (912)
..++|++||+.|+++|.|+++|.|+|+
T Consensus 194 -----------------------------------------------------~~~sl~~~L~~~~~~e~l~~~~~~~C~ 220 (348)
T 3nhe_A 194 -----------------------------------------------------PEVTLMDCMRLFTKEDVLDGDEKPTCC 220 (348)
T ss_dssp -----------------------------------------------------SCEEHHHHHHHHHSCEEECGGGCCEET
T ss_pred -----------------------------------------------------CCCCHHHHHHHHCCCEEECCCCCEECC
T ss_conf -----------------------------------------------------777899999874680571688856788
Q ss_pred CCCCCCCEEEEEEEECCCCEEEEEEEEEEECCCEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCC
Q ss_conf 76666302799994018951599885458707300123137956899989886433589999961999999996220799
Q 002523 813 RCKKHWQASKKLDLWRSPDILVIHLKRFSFSRYFKSKLDTYVDFPIDDLDLSNYVCCKNSQLSNRYVLYAISNHYGGMGG 892 (912)
Q Consensus 813 ~Ck~~~~AtKk~~lw~lP~iLiIHLKRF~~~~~~~~Ki~~~V~FPi~~LDls~~v~~~~~~~~~~YdL~AVinH~G~l~g 892 (912)
+|++++.|+|++.|+++|+||+||||||.+.+....|+.+.|.||++.|||++|+.... ....|+|+|||+|.|++.+
T Consensus 221 ~C~~~~~~~k~~~i~~lP~vL~i~lkRf~~~~~~~~K~~~~v~fp~~~ldl~~~~~~~~--~~~~Y~L~avv~H~G~~~~ 298 (348)
T 3nhe_A 221 RCRGRKRCIKKFSIQRFPKILVLHLKRFSESRIRTSKLTTFVNFPLRDLDLREFASENT--NHAVYNLYAVSNHSGTTMG 298 (348)
T ss_dssp TTTEECCEEEEEEEEECCSEEEEEECCBCCCSSCCCBCCCCEECCSSCEECGGGBCTTC--CCCEEEEEEEEEEEECSSC
T ss_pred CCCCCCCEEEEEEEECCCCEEEEEEECCCCCCCCEEECCCCEECCCCCCCHHHHCCCCC--CCCCEEEEEEEECCCCCCC
T ss_conf 88885648999881329865799987534567741456862303477587766067888--9986799999970489999
Q ss_pred CEEEEEEEE---CCEEEEE
Q ss_conf 628999981---8928899
Q 002523 893 GHYTAFVDV---SCVYSFH 908 (912)
Q Consensus 893 GHYtAy~k~---~~~~~f~ 908 (912)
|||+||+|+ +.||.||
T Consensus 299 GHY~~~~~~~~~~~W~~~n 317 (348)
T 3nhe_A 299 GHYTAYCRSPGTGEWHTFN 317 (348)
T ss_dssp EEEEEEEECTTTCCEEEEE
T ss_pred CCCEEEECCCCCCCEEEEE
T ss_conf 6438888169989379983
No 4
>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} SCOP: d.3.1.0 PDB: 2y5b_A 3mtn_A
Probab=1.00 E-value=1 Score=498.13 Aligned_cols=306 Identities=39% Similarity=0.653 Sum_probs=267.0
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCC-CCCCHHHHHHH
Q ss_conf 5333214899620799999994784799999731-012234579999815899999999987228999-86582999999
Q 002523 338 GLTGLRNLGNTCFMNSAIQCLAHTPEIVDYFLGD-YQKEINYENPLGLNGELALAFGDLLRKLWAPGG-IPVAPRMFKLK 415 (912)
Q Consensus 338 g~~GL~NlGNTCYmNS~LQ~L~~~p~l~~~ll~~-~~~~~n~~n~~~~~~~l~~~l~~L~~~l~~~~~-~~i~P~~~~~~ 415 (912)
|++||.|+||||||||+||||+++|+|+++++.. +....... +...+++.+|+.|+..||.+.. .+++|..|+.+
T Consensus 2 G~~GL~N~GNtCY~NSvLQ~L~~~~~~~~~~l~~~~~~~~~~~---~~~~~l~~~l~~l~~~l~~~~~~~~v~p~~~~~~ 78 (355)
T 3i3t_A 2 GHVGLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFRQEVPGG---GRAQELTEAFADVIGALWHPDSCEAVNPTRFRAV 78 (355)
T ss_dssp -CCCBCCCSSTHHHHHHHHHHHTCHHHHHHHHHTTHHHHC---------CHHHHHHHHHHHHTSSCSSCCCBCCHHHHHH
T ss_pred CCCCCEECCCCHHHHHHHHHHHCCHHHHHHHHHCHHHHHCCCC---CCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH
T ss_conf 9747588982669899999986789999999725488756789---9526999999999999845898874458999999
Q ss_pred HHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC---------------CCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 962189999888677999999999989987320026885322---------------35789985889899998320378
Q 002523 416 LANFAPQFSGYNQHDSQEFLAFLLDGLHEDLNRVKCKPYLEA---------------KDAEGQPEEEVAEEYWRNHRARN 480 (912)
Q Consensus 416 l~~~~p~F~~~~QqDA~EfL~~LLd~L~eel~~~~~k~~~~~---------------~d~~~~~d~~~a~e~w~~~~~~n 480 (912)
+++..++|.+++||||||||.+|||.||+++++..++..... .......+...+.+.|..+..++
T Consensus 79 l~~~~~~f~~~~QqDA~Efl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (355)
T 3i3t_A 79 FQKYVPSFSGYSQQDAQEFLKLLMERLHLEINRRGRRAPPILANGPVPSPPRRGGALLEEPELSDDDRANLMWKRYLERE 158 (355)
T ss_dssp HHHHCGGGCSSCCCBHHHHHHHHHHHHHHHHCCC----------------------------CCHHHHHHHHHHHHHHHC
T ss_pred HHHHCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 99738422898766789999999999999976541378752356766676444432235777887889999999852316
Q ss_pred CCCCCCCCCEEEEEEEECCCCCCEEEEEECCEEEEECCCCCCCCCEEEEEECCCCCCCCEEEEEEECCCCCHHHHHHHHH
Q ss_conf 86212354479998996189998435650642287418999866319999918999977006999178888899999998
Q 002523 481 DSIIVDLCQGQYRSMLVCPVCNKVSVTFDPLMYLSLPIPSTTMRTMTVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALS 560 (912)
Q Consensus 481 ~SiI~~lF~G~~~s~l~C~~C~~~s~~~e~F~~LsLpip~~~~~~~~v~~~~~d~~~~p~~~~v~~~k~~~~~dl~~~l~ 560 (912)
.|+|.++|+|+++++++|..|++.+.++|+|++|+|+||....
T Consensus 159 ~s~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~lsl~i~~~~~------------------------------------- 201 (355)
T 3i3t_A 159 DSKIVDLFVGQLKSCLKCQACGYRSTTFEVFCDLSLPIPKKGF------------------------------------- 201 (355)
T ss_dssp CSHHHHHHCEEEEEEEEETTTCCEEEEEEEESSEEECCCC----------------------------------------
T ss_pred CCCCCCCCCEEEEEEEEECCCCCCCEEECCCEEECCCCCCCCC-------------------------------------
T ss_conf 9815453357999558938999984022223465256786444-------------------------------------
Q ss_pred HHCCCCCCCCEEEEEEECCEEEEECCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEEECCCCCCCCCCCCCCEEEEC
Q ss_conf 55078997727888875360255026974324465789918999838999999327786310211112455555505514
Q 002523 561 TKCFLRNHEKLLVAEIYRSKIFRVLDEPSDLLGLIRDEDKLVAYRLPKDSETPSLVLFMHERKEESCHLGRLSLEWKIFG 640 (912)
Q Consensus 561 ~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~i~~~d~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg 640 (912)
.
T Consensus 202 -------~------------------------------------------------------------------------ 202 (355)
T 3i3t_A 202 -------A------------------------------------------------------------------------ 202 (355)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -------C------------------------------------------------------------------------
T ss_conf -------5------------------------------------------------------------------------
Q ss_pred CCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 22489717899866899999986187668889999864223778899964224666655789778898778999998996
Q 002523 641 TPLVGRLSDLTNGSDIRKLFLKLLDPFLMPVGDDSDFSDEAGKIDNGDSIVEDVTSSRVSDNDAVSDSSEAGDEPHLSDD 720 (912)
Q Consensus 641 ~P~~~~i~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 720 (912)
T Consensus 203 -------------------------------------------------------------------------------- 202 (355)
T 3i3t_A 203 -------------------------------------------------------------------------------- 202 (355)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred EEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCC
Q ss_conf 03898449998534568888867999971999943736585332332200000023333458999965899999985086
Q 002523 721 FQFYRLDSIRPTEIKMNEPLSISDFAKPLTIHVQWAEKMIEKYDTCLLSSLMEVCKPQLFTRMPPESVSLYKCLEAFLKE 800 (912)
Q Consensus 721 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~isL~dCL~~F~~~ 800 (912)
...++|++||+.|+++
T Consensus 203 ----------------------------------------------------------------~~~~sl~~~L~~~~~~ 218 (355)
T 3i3t_A 203 ----------------------------------------------------------------GGKVSLRDCFNLFTKE 218 (355)
T ss_dssp -------------------------------------------------------------------CBHHHHHHHHHCC
T ss_pred ----------------------------------------------------------------CCCCCHHHHHHHHCCC
T ss_conf ----------------------------------------------------------------6765899999985783
Q ss_pred CCCCCCCCCCCCCCCCCCCEEEEEEEECCCCEEEEEEEEEEECCCEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 65799898899776666302799994018951599885458707300123137956899989886433589999961999
Q 002523 801 EPLGPEDMWYCPRCKKHWQASKKLDLWRSPDILVIHLKRFSFSRYFKSKLDTYVDFPIDDLDLSNYVCCKNSQLSNRYVL 880 (912)
Q Consensus 801 E~L~~~d~wyC~~Ck~~~~AtKk~~lw~lP~iLiIHLKRF~~~~~~~~Ki~~~V~FPi~~LDls~~v~~~~~~~~~~YdL 880 (912)
|.|+++|.|+|++|++++.|+|++.|+++|+||+||||||.+.+....|+.+.|+||++.|||++|+.... ....|+|
T Consensus 219 e~l~~~n~~~C~~C~~~~~a~k~~~i~~lP~vL~i~lkRF~~~~~~~~K~~~~v~fp~~~l~l~~~~~~~~--~~~~Y~L 296 (355)
T 3i3t_A 219 EELESENAPVCDRCRQKTRSTKKLTVQRFPRILVLHLNRFSASRGSIKKSSVGVDFPLQRLSLGDFASDKA--GSPVYQL 296 (355)
T ss_dssp EEECGGGCCCCSSSCCCCCEEEEEEEEECCSEEEEEECCEECCSSCCEECCCCCBCCSSCEECGGGBC------CCEEEE
T ss_pred CCCCCCCCEECCCCCCCCCEEEEEECCCCCHHEEEEHHHEECCCCCCEECCCCEECCCCCCCCHHHCCCCC--CCCCEEE
T ss_conf 54589998559887886623799881139813099760200378980478861607765467302115899--9964599
Q ss_pred EEEEEEEECCCCCEEEEEEEECC-EEEEE
Q ss_conf 99999622079962899998189-28899
Q 002523 881 YAISNHYGGMGGGHYTAFVDVSC-VYSFH 908 (912)
Q Consensus 881 ~AVinH~G~l~gGHYtAy~k~~~-~~~f~ 908 (912)
+|||+|.|++++|||+||+|.++ ||.||
T Consensus 297 ~avv~H~G~~~~GHY~~~~~~~~~W~~~n 325 (355)
T 3i3t_A 297 YALCNHSGSVHYGHYTALCRCQTGWHVYN 325 (355)
T ss_dssp EEEEEEEEETTEEEEEEEEEETTEEEEEE
T ss_pred EEEEEECCCCCCCEEEEEEECCCEEEEEC
T ss_conf 99988267899980799997299289981
No 5
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=1.00 E-value=1 Score=466.94 Aligned_cols=266 Identities=25% Similarity=0.409 Sum_probs=210.6
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC---------
Q ss_conf 64566533321489962079999999478479999973101223457999981589999999998722899---------
Q 002523 333 GVCLLGLTGLRNLGNTCFMNSAIQCLAHTPEIVDYFLGDYQKEINYENPLGLNGELALAFGDLLRKLWAPG--------- 403 (912)
Q Consensus 333 ~~~~~g~~GL~NlGNTCYmNS~LQ~L~~~p~l~~~ll~~~~~~~n~~n~~~~~~~l~~~l~~L~~~l~~~~--------- 403 (912)
+...+|++||.|+||||||||+||||+++|+|+++|+..... ....++......+..+|+.|+..||++.
T Consensus 338 p~~~~G~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~ll~~~~~-~~~~~~~~~~~~l~~~l~~L~~~L~s~~~s~~~~~~~ 416 (854)
T 3ihp_A 338 PLFGPGYTGIRNLGNSCYLNSVVQVLFSIPDFQRKYVDKLEK-IFQNAPTDPTQDFSTQVAKLGHGLLSGEYSKPVPESG 416 (854)
T ss_dssp CCCSTTCCCBCCCSSCHHHHHHHHHHTTSHHHHHHHTTTHHH-HHHHCCSCGGGCHHHHHHHHHHHHHSCC---------
T ss_pred CCCCCCCCCEEECCCCEEHHHHHHHHHCCHHHHHHHHHHHHH-HHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 456788655176677620337999985729999999854344-3025667854118899999999874566454442112
Q ss_pred -----------CCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf -----------986582999999962189999888677999999999989987320026885322357899858898999
Q 002523 404 -----------GIPVAPRMFKLKLANFAPQFSGYNQHDSQEFLAFLLDGLHEDLNRVKCKPYLEAKDAEGQPEEEVAEEY 472 (912)
Q Consensus 404 -----------~~~i~P~~~~~~l~~~~p~F~~~~QqDA~EfL~~LLd~L~eel~~~~~k~~~~~~d~~~~~d~~~a~e~ 472 (912)
..+++|..|+.++++.+++|.+++||||||||.+|||.||++++
T Consensus 417 ~~~~~~~~~~~~~~isP~~f~~~l~~~~~~F~~~~QQDA~EFl~~LLd~L~~el~------------------------- 471 (854)
T 3ihp_A 417 DGERVPEQKEVQDGIAPRMFKALIGKGHPEFSTNRQQDAQEFFLHLINMVERNCR------------------------- 471 (854)
T ss_dssp ------------CCBCCHHHHHHHTTTCTTTTSSSCCBHHHHHHHHHHHHHHTCT-------------------------
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHC-------------------------
T ss_conf 2223333346777548199999986403311214433789999999999998736-------------------------
Q ss_pred HHHHHCCCCCCCCCCCCEEEEEEEECCCCCCEEEEEECCEEEEECCCCCCCCCEEEEEECCCCCCCCEEEEEEECCCCCH
Q ss_conf 98320378862123544799989961899984356506422874189998663199999189999770069991788888
Q 002523 473 WRNHRARNDSIIVDLCQGQYRSMLVCPVCNKVSVTFDPLMYLSLPIPSTTMRTMTVTVLSTDGSTMPAPFTVTVPKYGRF 552 (912)
Q Consensus 473 w~~~~~~n~SiI~~lF~G~~~s~l~C~~C~~~s~~~e~F~~LsLpip~~~~~~~~v~~~~~d~~~~p~~~~v~~~k~~~~ 552 (912)
..++|.++|+|+++++++|..|++++.++++|++|+|+||..... ..
T Consensus 472 -------~~s~i~~lF~G~l~s~i~C~~C~~vs~t~e~F~~LsL~Ip~~~~~--------------------------~~ 518 (854)
T 3ihp_A 472 -------SSENPNEVFRFLVEEKIKCLATEKVKYTQRVDYIMQLPVPMDAAL--------------------------NK 518 (854)
T ss_dssp -------TSCCGGGGTCEEEEEEEEETTTTEEEEEEEEESEEEECCCGGGCT--------------------------TH
T ss_pred -------CCCCCHHHCCCEEEEEEEECCCCCEEEEEEECEEEEEECCCCCCC--------------------------CC
T ss_conf -------568822210735889999648997767763064788457863234--------------------------42
Q ss_pred HHHHHHHHHHCCCCCCCCEEEEEEECCEEEEECCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEEECCCCCCCCCCC
Q ss_conf 99999998550789977278888753602550269743244657899189998389999993277863102111124555
Q 002523 553 QDLIDALSTKCFLRNHEKLLVAEIYRSKIFRVLDEPSDLLGLIRDEDKLVAYRLPKDSETPSLVLFMHERKEESCHLGRL 632 (912)
Q Consensus 553 ~dl~~~l~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~i~~~d~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~ 632 (912)
.++...-... ...
T Consensus 519 ~~~~~~~~~~------------------------------------------------------------~~~------- 531 (854)
T 3ihp_A 519 EELLEYEEKK------------------------------------------------------------RQA------- 531 (854)
T ss_dssp HHHHHHHHHH------------------------------------------------------------HHH-------
T ss_pred CCHHHHCCCC------------------------------------------------------------CCC-------
T ss_conf 1000100111------------------------------------------------------------100-------
Q ss_pred CCCEEEECCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 55505514224897178998668999999861876688899998642237788999642246666557897788987789
Q 002523 633 SLEWKIFGTPLVGRLSDLTNGSDIRKLFLKLLDPFLMPVGDDSDFSDEAGKIDNGDSIVEDVTSSRVSDNDAVSDSSEAG 712 (912)
Q Consensus 633 ~~~~~~fg~P~~~~i~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 712 (912)
. . ++
T Consensus 532 ----------------------------~---------~----------------~g----------------------- 535 (854)
T 3ihp_A 532 ----------------------------E---------E----------------EK----------------------- 535 (854)
T ss_dssp ----------------------------H---------H----------------TT-----------------------
T ss_pred ----------------------------C---------C----------------CC-----------------------
T ss_conf ----------------------------0---------2----------------35-----------------------
Q ss_pred CCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHH
Q ss_conf 99998996038984499985345688888679999719999437365853323322000000233334589999658999
Q 002523 713 DEPHLSDDFQFYRLDSIRPTEIKMNEPLSISDFAKPLTIHVQWAEKMIEKYDTCLLSSLMEVCKPQLFTRMPPESVSLYK 792 (912)
Q Consensus 713 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~isL~d 792 (912)
. ..+ ....+.++|++
T Consensus 536 -----------------~---------------------------------------~~~---------~~~~~~~sL~d 550 (854)
T 3ihp_A 536 -----------------M---------------------------------------ALP---------ELVRAQVPFSS 550 (854)
T ss_dssp -----------------C---------------------------------------CCC---------CCCCEECCHHH
T ss_pred -----------------C---------------------------------------CCC---------CCCCCCCCHHH
T ss_conf -----------------5---------------------------------------443---------24567777999
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCEEEEEEEEEEEC-CCEECCCCEEEECCCCCCCCCCCCCC
Q ss_conf 999850866579989889977666630279999401895159988545870-73001231379568999898864335
Q 002523 793 CLEAFLKEEPLGPEDMWYCPRCKKHWQASKKLDLWRSPDILVIHLKRFSFS-RYFKSKLDTYVDFPIDDLDLSNYVCC 869 (912)
Q Consensus 793 CL~~F~~~E~L~~~d~wyC~~Ck~~~~AtKk~~lw~lP~iLiIHLKRF~~~-~~~~~Ki~~~V~FPi~~LDls~~v~~ 869 (912)
||+.|+++|.|++ |+|++|+.++.|+|++.|+++|+|||||||||.|+ .+...|+++.|.|| ..|||++|+..
T Consensus 551 cL~~f~~~E~Le~---y~C~~C~~k~~a~K~~~i~~lP~vLiihLkRF~~d~~~~~~Ki~~~V~FP-~~LDl~~y~~~ 624 (854)
T 3ihp_A 551 CLEAYGAPEQVDD---FWSTALQAKSVAVKTTRFASFPDYLVIQIKKFTFGLDWVPKKLDVSIEMP-EELDISQLRGT 624 (854)
T ss_dssp HHHHHHSCEEEEE---EEETTTTEEEEEEEEEEESSCCSEEEEEECCEEECGGGCEEECCEECCCC-SEEECGGGBCC
T ss_pred HHHHHCCCEEEEE---EECCCCCCCCEEEEEEEEEECCCEEEEEEEHHEECCCCCEEECCEEEECC-CCEEHHHHCCC
T ss_conf 9998558407533---10355687300538888212896679994531356777327788698568-80706885067
No 6
>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A
Probab=1.00 E-value=1 Score=459.86 Aligned_cols=267 Identities=22% Similarity=0.366 Sum_probs=231.6
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH
Q ss_conf 66533321489962079999999478479999973101223457999981589999999998722899986582999999
Q 002523 336 LLGLTGLRNLGNTCFMNSAIQCLAHTPEIVDYFLGDYQKEINYENPLGLNGELALAFGDLLRKLWAPGGIPVAPRMFKLK 415 (912)
Q Consensus 336 ~~g~~GL~NlGNTCYmNS~LQ~L~~~p~l~~~ll~~~~~~~n~~n~~~~~~~l~~~l~~L~~~l~~~~~~~i~P~~~~~~ 415 (912)
.+|++||.|+||||||||+||||+|+|+|+++++..... .. .....+..+|+.|+..||.+. .++.|..|+.+
T Consensus 3 ~~g~~GL~NlGnTCYmNSvLQ~L~~~~~~r~~~~~~~~~---~~---~~~~~~~~~l~~lf~~l~~~~-~~~~~~~l~~~ 75 (353)
T 1nb8_A 3 HTGYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTE---GD---DSSKSVPLALQRVFYELQHSD-KPVGTKKLTKS 75 (353)
T ss_dssp CSSCCCBCCCSTTTTHHHHHHHHHTCHHHHHHHHTSCCT---TS---CTTTCHHHHHHHHHHHHHHCS-SCBCCHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHCCCC---CC---CCCCCHHHHHHHHHHHHHHCC-CCCCCHHHHHH
T ss_conf 889987564745449899999997779999999837877---77---654409999999999886058-87787799864
Q ss_pred HHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEE
Q ss_conf 96218999988867799999999998998732002688532235789985889899998320378862123544799989
Q 002523 416 LANFAPQFSGYNQHDSQEFLAFLLDGLHEDLNRVKCKPYLEAKDAEGQPEEEVAEEYWRNHRARNDSIIVDLCQGQYRSM 495 (912)
Q Consensus 416 l~~~~p~F~~~~QqDA~EfL~~LLd~L~eel~~~~~k~~~~~~d~~~~~d~~~a~e~w~~~~~~n~SiI~~lF~G~~~s~ 495 (912)
++. +.|.+++||||||||.+|||.||++++.. ...++|.++|+|+++++
T Consensus 76 ~~~--~~~~~~~QqDA~EFl~~LLd~L~~~~~~~-----------------------------~~~s~i~~~F~g~~~~~ 124 (353)
T 1nb8_A 76 FGW--ETLDSFMQHDVQELCRVLLDNVENKMKGT-----------------------------CVEGTIPKLFRGKMVSY 124 (353)
T ss_dssp HTC--CBTTTTTTSCHHHHHHHHHHHHHHHTTTS-----------------------------TTTTHHHHHHCEEEEEE
T ss_pred CCC--CCCCCCCCHHHHHHHHHHHHHHHHHHCCC-----------------------------CCCCHHHHHCEEEEEEE
T ss_conf 188--77786532639999999999999884488-----------------------------75551235030589999
Q ss_pred EECCCCCCEEEEEECCEEEEECCCCCCCCCEEEEEECCCCCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEEE
Q ss_conf 96189998435650642287418999866319999918999977006999178888899999998550789977278888
Q 002523 496 LVCPVCNKVSVTFDPLMYLSLPIPSTTMRTMTVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALSTKCFLRNHEKLLVAE 575 (912)
Q Consensus 496 l~C~~C~~~s~~~e~F~~LsLpip~~~~~~~~v~~~~~d~~~~p~~~~v~~~k~~~~~dl~~~l~~~~~~~~~~~l~~~e 575 (912)
++|..|++.+.++|+|++|+|+||..
T Consensus 125 i~C~~C~~~s~~~e~f~~LsL~i~~~------------------------------------------------------ 150 (353)
T 1nb8_A 125 IQCKEVDYRSDRREDYYDIQLSIKGK------------------------------------------------------ 150 (353)
T ss_dssp EEESSSCCEEEEEEEESCEEECCTTC------------------------------------------------------
T ss_pred EEECCCCCEECEEEEEEEEEEEECCC------------------------------------------------------
T ss_conf 99256897002222327998897997------------------------------------------------------
Q ss_pred EECCEEEEECCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEEECCCCCCCCCCCCCCEEEECCCEEEECCCCCCHHH
Q ss_conf 75360255026974324465789918999838999999327786310211112455555505514224897178998668
Q 002523 576 IYRSKIFRVLDEPSDLLGLIRDEDKLVAYRLPKDSETPSLVLFMHERKEESCHLGRLSLEWKIFGTPLVGRLSDLTNGSD 655 (912)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~i~~~d~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~i~~~~~~~~ 655 (912)
T Consensus 151 -------------------------------------------------------------------------------- 150 (353)
T 1nb8_A 151 -------------------------------------------------------------------------------- 150 (353)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCC
Q ss_conf 99999986187668889999864223778899964224666655789778898778999998996038984499985345
Q 002523 656 IRKLFLKLLDPFLMPVGDDSDFSDEAGKIDNGDSIVEDVTSSRVSDNDAVSDSSEAGDEPHLSDDFQFYRLDSIRPTEIK 735 (912)
Q Consensus 656 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 735 (912)
T Consensus 151 -------------------------------------------------------------------------------- 150 (353)
T 1nb8_A 151 -------------------------------------------------------------------------------- 150 (353)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 68888867999971999943736585332332200000023333458999965899999985086657998988997766
Q 002523 736 MNEPLSISDFAKPLTIHVQWAEKMIEKYDTCLLSSLMEVCKPQLFTRMPPESVSLYKCLEAFLKEEPLGPEDMWYCPRCK 815 (912)
Q Consensus 736 ~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~isL~dCL~~F~~~E~L~~~d~wyC~~Ck 815 (912)
.+|.+||+.|+.+|.|+++|.|+|+.|+
T Consensus 151 ----------------------------------------------------~~l~~~L~~~~~~E~l~~~~~~~C~~c~ 178 (353)
T 1nb8_A 151 ----------------------------------------------------KNIFESFVDYVAVEQLDGDNKYDAGEHG 178 (353)
T ss_dssp ----------------------------------------------------SBHHHHHHHHTCCEEECTTTCEECGGGC
T ss_pred ----------------------------------------------------CCHHHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf ----------------------------------------------------6457799985173424787531477675
Q ss_pred CCCCEEEEEEEECCCCEEEEEEEEEEECC--CEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCC
Q ss_conf 66302799994018951599885458707--3001231379568999898864335899999619999999962207996
Q 002523 816 KHWQASKKLDLWRSPDILVIHLKRFSFSR--YFKSKLDTYVDFPIDDLDLSNYVCCKNSQLSNRYVLYAISNHYGGMGGG 893 (912)
Q Consensus 816 ~~~~AtKk~~lw~lP~iLiIHLKRF~~~~--~~~~Ki~~~V~FPi~~LDls~~v~~~~~~~~~~YdL~AVinH~G~l~gG 893 (912)
++.|+|++.|+++|+||+||||||.|+. ..+.|+++.|.|| ..|||++|+.......+..|+|+|||+|+|++++|
T Consensus 179 -~~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~K~~~~v~fp-~~Ldl~~~~~~~~~~~~~~Y~L~avv~H~G~~~~G 256 (353)
T 1nb8_A 179 -LQEAEKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRFEFP-EQLPLDEFLQKTDPKDPANYILHAVLVHSGDNHGG 256 (353)
T ss_dssp -EECEEEEEEESCCCSEEEEEECCCC--------CCCCCCCBCC-SEEECGGGBSSCCTTSCCEEEEEEEEEEESSTTCC
T ss_pred -CEEEEEEEEHHCCCCCEEEEEECEEEECCCCCEEECCCEEECC-CEEEHHHHHCCCCCCCCCEEEEEEEEEEECCCCCC
T ss_conf -1756898884009972599983679842359507558289779-76652352213378998159999999974789886
Q ss_pred EEEEEEEE---CCEEEEE
Q ss_conf 28999981---8928899
Q 002523 894 HYTAFVDV---SCVYSFH 908 (912)
Q Consensus 894 HYtAy~k~---~~~~~f~ 908 (912)
||+||+|+ +.||.||
T Consensus 257 HY~a~v~~~~~~~W~~fn 274 (353)
T 1nb8_A 257 HYVVYLNPKGDGKWCKFD 274 (353)
T ss_dssp CEEEEECTTSSSCCEEEE
T ss_pred EEEEEEECCCCCCEEEEE
T ss_conf 799999459999889998
No 7
>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A
Probab=1.00 E-value=1 Score=458.99 Aligned_cols=290 Identities=23% Similarity=0.327 Sum_probs=241.0
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH
Q ss_conf 66533321489962079999999478479999973101223457999981589999999998722899986582999999
Q 002523 336 LLGLTGLRNLGNTCFMNSAIQCLAHTPEIVDYFLGDYQKEINYENPLGLNGELALAFGDLLRKLWAPGGIPVAPRMFKLK 415 (912)
Q Consensus 336 ~~g~~GL~NlGNTCYmNS~LQ~L~~~p~l~~~ll~~~~~~~n~~n~~~~~~~l~~~l~~L~~~l~~~~~~~i~P~~~~~~ 415 (912)
..+++||.|+||||||||+||||+|+|+|+++++.... ......+.....+++.+|+.|+..||.+. .+++|..|+.+
T Consensus 11 ~~~~~GL~NlGNTCYmNSvLQ~L~~~~~~~~~l~~~~~-~~~~~~~~~~~~~l~~~l~~lf~~l~~~~-~~v~P~~~~~~ 88 (404)
T 2ayn_A 11 MELPCGLTNLGNTCYMNATVQCIRSVPELKDALKRYAG-ALRASGEMASAQYITAALRDLFDSMDKTS-SSIPPIILLQF 88 (404)
T ss_dssp CCCCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTCCC-CC------CHHHHHHHHHHHHHHHHHHHC-SEECCHHHHHH
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHCCC-CCCCCCCCCCCCHHHHHHHHHHHHHHCCC-CCCCHHHHHHH
T ss_conf 69998865477043989999998768999999996451-01347888854389999999999986389-83886999999
Q ss_pred HHHHCCCCC------CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 962189999------88867799999999998998732002688532235789985889899998320378862123544
Q 002523 416 LANFAPQFS------GYNQHDSQEFLAFLLDGLHEDLNRVKCKPYLEAKDAEGQPEEEVAEEYWRNHRARNDSIIVDLCQ 489 (912)
Q Consensus 416 l~~~~p~F~------~~~QqDA~EfL~~LLd~L~eel~~~~~k~~~~~~d~~~~~d~~~a~e~w~~~~~~n~SiI~~lF~ 489 (912)
++...|+|. +++||||||||.+|||.||++++.....+. .+..+...|..+...+.++|.++|+
T Consensus 89 l~~~~~~f~~~~~~~~~~QqDA~Efl~~lLd~L~~~~~~~~~~~~----------~e~~~~~~~~~~~~~~~s~i~~~F~ 158 (404)
T 2ayn_A 89 LHMAFPQFAEKGEQGQYLQQDANECWIQMMRVLQQKLEAIEDDSV----------KETDSSSASAATPSKKKSLIDQFFG 158 (404)
T ss_dssp HHHHCGGGGCBCTTSCBCCCCHHHHHHHHHHHHHTTSCCCCCC----------------------------CCHHHHHTC
T ss_pred HHHHCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCC----------CCCCHHHHHHHHCCCCCCHHHHHCC
T ss_conf 988570020235678866548999999999999987443567752----------2100122100000113760245156
Q ss_pred EEEEEEEECCCCCCEE--EEEECCEEEEECCCCCCCCCEEEEEECCCCCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCC
Q ss_conf 7999899618999843--56506422874189998663199999189999770069991788888999999985507899
Q 002523 490 GQYRSMLVCPVCNKVS--VTFDPLMYLSLPIPSTTMRTMTVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALSTKCFLRN 567 (912)
Q Consensus 490 G~~~s~l~C~~C~~~s--~~~e~F~~LsLpip~~~~~~~~v~~~~~d~~~~p~~~~v~~~k~~~~~dl~~~l~~~~~~~~ 567 (912)
|+++++++|..|++++ .++|+|++|+|+||..
T Consensus 159 G~l~s~i~C~~C~~~s~s~~~e~f~~Lsl~i~~~---------------------------------------------- 192 (404)
T 2ayn_A 159 VEFETTMKCTESEEEEVTKGKENQLQLSCFINQE---------------------------------------------- 192 (404)
T ss_dssp EEEEEEEEESSSCCCCCBCCEEEESSEEEECSSS----------------------------------------------
T ss_pred EEEEEEEEECCCCCCCCCEEECCCCEEEEECCCC----------------------------------------------
T ss_conf 7999999825789816852422574687656998----------------------------------------------
Q ss_pred CCCEEEEEEECCEEEEECCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEEECCCCCCCCCCCCCCEEEECCCEEEEC
Q ss_conf 77278888753602550269743244657899189998389999993277863102111124555555055142248971
Q 002523 568 HEKLLVAEIYRSKIFRVLDEPSDLLGLIRDEDKLVAYRLPKDSETPSLVLFMHERKEESCHLGRLSLEWKIFGTPLVGRL 647 (912)
Q Consensus 568 ~~~l~~~e~~~~~~~~~~~~~~~~~~~i~~~d~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~i 647 (912)
T Consensus 193 -------------------------------------------------------------------------------- 192 (404)
T 2ayn_A 193 -------------------------------------------------------------------------------- 192 (404)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEC
Q ss_conf 78998668999999861876688899998642237788999642246666557897788987789999989960389844
Q 002523 648 SDLTNGSDIRKLFLKLLDPFLMPVGDDSDFSDEAGKIDNGDSIVEDVTSSRVSDNDAVSDSSEAGDEPHLSDDFQFYRLD 727 (912)
Q Consensus 648 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 727 (912)
T Consensus 193 -------------------------------------------------------------------------------- 192 (404)
T 2ayn_A 193 -------------------------------------------------------------------------------- 192 (404)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCC
Q ss_conf 99985345688888679999719999437365853323322000000233334589999658999999850866579989
Q 002523 728 SIRPTEIKMNEPLSISDFAKPLTIHVQWAEKMIEKYDTCLLSSLMEVCKPQLFTRMPPESVSLYKCLEAFLKEEPLGPED 807 (912)
Q Consensus 728 ~~~~~~~~~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~isL~dCL~~F~~~E~L~~~d 807 (912)
..+|++||+.|+.+| +.
T Consensus 193 -----------------------------------------------------------~~~l~~~L~~~~~e~-l~--- 209 (404)
T 2ayn_A 193 -----------------------------------------------------------VKYLFTGLKLRLQEE-IT--- 209 (404)
T ss_dssp -----------------------------------------------------------CCBHHHHHHHTTEEC-CC---
T ss_pred -----------------------------------------------------------CCCHHHHHHHHCCCC-EE---
T ss_conf -----------------------------------------------------------542999998754401-03---
Q ss_pred CCCCCCCCCCCCEEEEEEEECCCCEEEEEEEEEEECCC--EECCCCEEEECCCCCCCCCCCCCCC---------------
Q ss_conf 88997766663027999940189515998854587073--0012313795689998988643358---------------
Q 002523 808 MWYCPRCKKHWQASKKLDLWRSPDILVIHLKRFSFSRY--FKSKLDTYVDFPIDDLDLSNYVCCK--------------- 870 (912)
Q Consensus 808 ~wyC~~Ck~~~~AtKk~~lw~lP~iLiIHLKRF~~~~~--~~~Ki~~~V~FPi~~LDls~~v~~~--------------- 870 (912)
|+|++|++.+.|+|++.|+++|+||+||||||.|... .+.|+++.|.||. .|||++|+...
T Consensus 210 -~~c~~c~~~~~~~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~Ki~~~v~fP~-~Ldl~~~~~~~~~~~~~~~~~~~~~~ 287 (404)
T 2ayn_A 210 -KQSPTLQRNALYIKSSKISRLPAYLTIQMVRFFYKEKESVNAKVLKDVKFPL-MLDMYELCTPELQEKMVSFRSKFKDL 287 (404)
T ss_dssp -CEETTTTEECCEEEEEEEEECCSSEEEEEECBCCCCSSSSCCBCCCCCBCCS-EEECGGGBCHHHHHHTTTTTGGGTCT
T ss_pred -ECCHHHCCCCCEEEEEEHHHCCCCEEEEEEEEEEECCCCCEECCCCEECCCC-EEEHHHHCCHHHHHHCCHHHHHHHHH
T ss_conf -6252009830155553172199716999998898246683100174464682-56776744855541020135677655
Q ss_pred ---------------------------------CCCCCCCEEEEEEEEEEE-CCCCCEEEEEEEE-C-CEEEEE
Q ss_conf ---------------------------------999996199999999622-0799628999981-8-928899
Q 002523 871 ---------------------------------NSQLSNRYVLYAISNHYG-GMGGGHYTAFVDV-S-CVYSFH 908 (912)
Q Consensus 871 ---------------------------------~~~~~~~YdL~AVinH~G-~l~gGHYtAy~k~-~-~~~~f~ 908 (912)
....+..|+|+|||+|.| ++++|||+||+|+ + .||.||
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~L~avv~H~G~s~~~GHY~a~v~~~~~~W~~fn 361 (404)
T 2ayn_A 288 EDKKVNQQPNTSDKKSSPQKEVKYEPFSFADDIGSNNCGYYDLQAVLTHQGRSSSSGHYVSWVKRKQDEWIKFD 361 (404)
T ss_dssp TC----------------------CCCCCSCTTTTCCCSEEEEEEEEEEESSSTTSSEEEEEEEEETTEEEEEB
T ss_pred HCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCEEEEEECCCCEEEEEE
T ss_conf 31540133311033555555333455555455576888539999999954899999886999989999289960
No 8
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}
Probab=1.00 E-value=1 Score=458.88 Aligned_cols=270 Identities=21% Similarity=0.357 Sum_probs=232.5
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHH
Q ss_conf 64566533321489962079999999478479999973101223457999981589999999998722899986582999
Q 002523 333 GVCLLGLTGLRNLGNTCFMNSAIQCLAHTPEIVDYFLGDYQKEINYENPLGLNGELALAFGDLLRKLWAPGGIPVAPRMF 412 (912)
Q Consensus 333 ~~~~~g~~GL~NlGNTCYmNS~LQ~L~~~p~l~~~ll~~~~~~~n~~n~~~~~~~l~~~l~~L~~~l~~~~~~~i~P~~~ 412 (912)
....+|++||.|+||||||||+||||+++|+|+++++..... .. .....++.+|+.|+..|+.+. .++.|..|
T Consensus 169 ~~~~~g~~GL~NlGnTCYmNSvLQ~L~~~~~fr~~~~~~~~~---~~---~~~~~~~~~l~~lf~~l~~~~-~~~~~~~l 241 (522)
T 2f1z_A 169 SKKHTGYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTE---GD---DSSKSVPLALQRVFYELQHSD-KPVGTKKL 241 (522)
T ss_dssp TTTTTSCCCBCCC--CTTHHHHHHHHHTCHHHHHHHHTCCCC---SS---CTTTCHHHHHHHHHHHHHHCS-SCBCCTTH
T ss_pred CCCCCCCCCEECCCCCHHHHHHHHHHHCCHHHHHHHHHCCCC---CC---CCCCHHHHHHHHHHHHHHCCC-CCCCCHHH
T ss_conf 655678544113863188889999986129999999606656---77---656528999999999986379-85576788
Q ss_pred HHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEE
Q ss_conf 99996218999988867799999999998998732002688532235789985889899998320378862123544799
Q 002523 413 KLKLANFAPQFSGYNQHDSQEFLAFLLDGLHEDLNRVKCKPYLEAKDAEGQPEEEVAEEYWRNHRARNDSIIVDLCQGQY 492 (912)
Q Consensus 413 ~~~l~~~~p~F~~~~QqDA~EfL~~LLd~L~eel~~~~~k~~~~~~d~~~~~d~~~a~e~w~~~~~~n~SiI~~lF~G~~ 492 (912)
+.+++. +.|.+++||||||||.+|||.||++++.. ...++|.++|+|++
T Consensus 242 ~~~~~~--~~~~~~~QqDa~Efl~~LLd~L~~~l~~~-----------------------------~~~s~i~~lF~G~~ 290 (522)
T 2f1z_A 242 TKSFGW--ETLDSFMQHDVQELCRVLLDNVENKMKGT-----------------------------CVEGTIPKLFRGKM 290 (522)
T ss_dssp HHHTCC--CTTTSSTTSCHHHHHHHHHHHHHHHHTTS-----------------------------TTTTHHHHHHCEEE
T ss_pred HHHCCC--CCCCCCCCCCHHHHHHHHHHHHHHHCCCC-----------------------------CCCCCHHHHEEEEE
T ss_conf 864187--65787626469999999999998641588-----------------------------65660213133799
Q ss_pred EEEEECCCCCCEEEEEECCEEEEECCCCCCCCCEEEEEECCCCCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEE
Q ss_conf 98996189998435650642287418999866319999918999977006999178888899999998550789977278
Q 002523 493 RSMLVCPVCNKVSVTFDPLMYLSLPIPSTTMRTMTVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALSTKCFLRNHEKLL 572 (912)
Q Consensus 493 ~s~l~C~~C~~~s~~~e~F~~LsLpip~~~~~~~~v~~~~~d~~~~p~~~~v~~~k~~~~~dl~~~l~~~~~~~~~~~l~ 572 (912)
+++++|..|++.+.++|+|++|+|+||..
T Consensus 291 ~s~i~C~~C~~~s~~~e~f~~LsL~i~~~--------------------------------------------------- 319 (522)
T 2f1z_A 291 VSYIQCKEVDYRSDRREDYYDIQLSIKGK--------------------------------------------------- 319 (522)
T ss_dssp EEEECCSSSCCCCCEEEEESCEEECCTTC---------------------------------------------------
T ss_pred EEEEECCCCCCEEEEEEEEEEEEEEECCC---------------------------------------------------
T ss_conf 99887278995553663207898884786---------------------------------------------------
Q ss_pred EEEEECCEEEEECCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEEECCCCCCCCCCCCCCEEEECCCEEEECCCCCC
Q ss_conf 88875360255026974324465789918999838999999327786310211112455555505514224897178998
Q 002523 573 VAEIYRSKIFRVLDEPSDLLGLIRDEDKLVAYRLPKDSETPSLVLFMHERKEESCHLGRLSLEWKIFGTPLVGRLSDLTN 652 (912)
Q Consensus 573 ~~e~~~~~~~~~~~~~~~~~~~i~~~d~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~i~~~~~ 652 (912)
T Consensus 320 -------------------------------------------------------------------------------- 319 (522)
T 2f1z_A 320 -------------------------------------------------------------------------------- 319 (522)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCC
Q ss_conf 66899999986187668889999864223778899964224666655789778898778999998996038984499985
Q 002523 653 GSDIRKLFLKLLDPFLMPVGDDSDFSDEAGKIDNGDSIVEDVTSSRVSDNDAVSDSSEAGDEPHLSDDFQFYRLDSIRPT 732 (912)
Q Consensus 653 ~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 732 (912)
T Consensus 320 -------------------------------------------------------------------------------- 319 (522)
T 2f1z_A 320 -------------------------------------------------------------------------------- 319 (522)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 34568888867999971999943736585332332200000023333458999965899999985086657998988997
Q 002523 733 EIKMNEPLSISDFAKPLTIHVQWAEKMIEKYDTCLLSSLMEVCKPQLFTRMPPESVSLYKCLEAFLKEEPLGPEDMWYCP 812 (912)
Q Consensus 733 ~~~~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~isL~dCL~~F~~~E~L~~~d~wyC~ 812 (912)
.+|.+||+.|+.+|.|+++|.|+|+
T Consensus 320 -------------------------------------------------------~~l~~~L~~~~~~E~l~~~n~~~C~ 344 (522)
T 2f1z_A 320 -------------------------------------------------------KNIFESFVDYVAVEQLDGDNKYDAG 344 (522)
T ss_dssp -------------------------------------------------------CBHHHHHHHHTCEEEECTTSCBCCG
T ss_pred -------------------------------------------------------CCCHHHHHHHHCEEECCCCCEEECC
T ss_conf -------------------------------------------------------4406799874050222776204047
Q ss_pred CCCCCCCEEEEEEEECCCCEEEEEEEEEEECC--CEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECC
Q ss_conf 76666302799994018951599885458707--3001231379568999898864335899999619999999962207
Q 002523 813 RCKKHWQASKKLDLWRSPDILVIHLKRFSFSR--YFKSKLDTYVDFPIDDLDLSNYVCCKNSQLSNRYVLYAISNHYGGM 890 (912)
Q Consensus 813 ~Ck~~~~AtKk~~lw~lP~iLiIHLKRF~~~~--~~~~Ki~~~V~FPi~~LDls~~v~~~~~~~~~~YdL~AVinH~G~l 890 (912)
.|+ ++.|+|++.|+++|+||+||||||.|+. ....|+++.|+|| ..|||++|+.......+..|+|+||++|+|++
T Consensus 345 ~c~-~~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~Ki~~~v~fp-~~Ldl~~~~~~~~~~~~~~Y~L~avv~H~G~~ 422 (522)
T 2f1z_A 345 EHG-LQEAEKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRFEFP-EQLPLDEFLQKTDPKDPANYILHAVLVHSGDN 422 (522)
T ss_dssp GGC-SBCEEEEEEESCCCSEEEEEECCEEECSSSSCEEECCCCCBCC-SEEECGGGBSSCCTTSCCEEEEEEEEEEECSS
T ss_pred CCC-CCCEEEEEEEECCCCEEEEEEEEEEECCCCCCCEECCCEEECC-CEECCHHHHCCCCCCCCCEEEEEEEEEECCCC
T ss_conf 677-6536799993419963899987478816678526768279678-81344354054468998379999999964569
Q ss_pred CCCEEEEEEEE---CCEEEEE
Q ss_conf 99628999981---8928899
Q 002523 891 GGGHYTAFVDV---SCVYSFH 908 (912)
Q Consensus 891 ~gGHYtAy~k~---~~~~~f~ 908 (912)
++|||+||+|+ +.||.||
T Consensus 423 ~~GHY~a~v~~~~~~~W~~fn 443 (522)
T 2f1z_A 423 HGGHYVVYLNPKGDGKWCKFD 443 (522)
T ss_dssp SCSEEEEEECTTSSSCCEEEE
T ss_pred CCCEEEEEEECCCCCCEEEEE
T ss_conf 986689999438999899997
No 9
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A
Probab=1.00 E-value=1 Score=453.70 Aligned_cols=288 Identities=30% Similarity=0.556 Sum_probs=237.9
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCC--------
Q ss_conf 4566533321489962079999999478479999973101-2234579999815899999999987228999--------
Q 002523 334 VCLLGLTGLRNLGNTCFMNSAIQCLAHTPEIVDYFLGDYQ-KEINYENPLGLNGELALAFGDLLRKLWAPGG-------- 404 (912)
Q Consensus 334 ~~~~g~~GL~NlGNTCYmNS~LQ~L~~~p~l~~~ll~~~~-~~~n~~n~~~~~~~l~~~l~~L~~~l~~~~~-------- 404 (912)
...+|++||.|+||||||||+||||+|+|+|+++++...+ ...+..++ ..++..++..++..+|....
T Consensus 136 ~~~~G~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~~l~~~~~~~~~~~~~---~~~l~~~l~~l~~~l~~~~~~~~~~~~~ 212 (476)
T 3mhs_A 136 ERRDGLSGLINMGSTCFMSSILQCLIHNPYFIRHSMSQIHSNNCKVRSP---DKCFSCALDKIVHELYGALNTKQASSSS 212 (476)
T ss_dssp GGTTCCCCCCCSSSTHHHHHHHHHHHTCHHHHHHHHTTHHHHHCSSCCT---TTCHHHHHHHHHHHHHSCCCC-------
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHCCHHHHCCCCCC---CCCHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 5788997877088467998999998678999999874503554457886---4105899999999996120333345666
Q ss_pred -CCCCHHHHHHHHH---HHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf -8658299999996---218999988867799999999998998732002688532235789985889899998320378
Q 002523 405 -IPVAPRMFKLKLA---NFAPQFSGYNQHDSQEFLAFLLDGLHEDLNRVKCKPYLEAKDAEGQPEEEVAEEYWRNHRARN 480 (912)
Q Consensus 405 -~~i~P~~~~~~l~---~~~p~F~~~~QqDA~EfL~~LLd~L~eel~~~~~k~~~~~~d~~~~~d~~~a~e~w~~~~~~n 480 (912)
..+.|..++..+. +.+++|.+++||||||||.+|||.||++++....+. .+.+.......
T Consensus 213 ~~~~~~~~~~~~l~~~~~~~~~f~~~~QqDA~EFl~~LLd~L~~~~~~~~~~~----------------~~~~~~~~~~~ 276 (476)
T 3mhs_A 213 TSTNRQTGFIYLLTCAWKINQNLAGYSQQDAHEFWQFIINQIHQSYVLDLPNA----------------KEVSRANNKQC 276 (476)
T ss_dssp -CCCSCHHHHHHHHHHHHHCGGGSSSSCEEHHHHHHHHHHHHHHHHHHHCCC-----------------------CCCSC
T ss_pred CCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC----------------CCCCCCCCCCC
T ss_conf 55657500899999988745123888775999999999999999976415665----------------33454455668
Q ss_pred CCCCCCCCCEEEEEEEECCCCCCEEE-EEECCEEEEECCCCCCCCCEEEEEECCCCCCCCEEEEEEECCCCCHHHHHHHH
Q ss_conf 86212354479998996189998435-65064228741899986631999991899997700699917888889999999
Q 002523 481 DSIIVDLCQGQYRSMLVCPVCNKVSV-TFDPLMYLSLPIPSTTMRTMTVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDAL 559 (912)
Q Consensus 481 ~SiI~~lF~G~~~s~l~C~~C~~~s~-~~e~F~~LsLpip~~~~~~~~v~~~~~d~~~~p~~~~v~~~k~~~~~dl~~~l 559 (912)
.++|.++|+|+++++++|..|++++. ++|||++|+|+||..
T Consensus 277 ~s~i~~~F~G~l~~~~~C~~C~~~s~~~~e~f~~LsL~i~~~-------------------------------------- 318 (476)
T 3mhs_A 277 ECIVHTVFEGSLESSIVCPGCQNNSKTTIDPFLDLSLDIKDK-------------------------------------- 318 (476)
T ss_dssp CSHHHHHSCEEEEEEEECTTTCCCCEEEEEEESCEEECCTTC--------------------------------------
T ss_pred CCCCEEECCEEEEEEEEECCCCCEECCCCCCHHHHCCCHHHH--------------------------------------
T ss_conf 880021132599988998999985178656666613201246--------------------------------------
Q ss_pred HHHCCCCCCCCEEEEEEECCEEEEECCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEEECCCCCCCCCCCCCCEEEE
Q ss_conf 85507899772788887536025502697432446578991899983899999932778631021111245555550551
Q 002523 560 STKCFLRNHEKLLVAEIYRSKIFRVLDEPSDLLGLIRDEDKLVAYRLPKDSETPSLVLFMHERKEESCHLGRLSLEWKIF 639 (912)
Q Consensus 560 ~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~i~~~d~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 639 (912)
T Consensus 319 -------------------------------------------------------------------------------- 318 (476)
T 3mhs_A 319 -------------------------------------------------------------------------------- 318 (476)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 42248971789986689999998618766888999986422377889996422466665578977889877899999899
Q 002523 640 GTPLVGRLSDLTNGSDIRKLFLKLLDPFLMPVGDDSDFSDEAGKIDNGDSIVEDVTSSRVSDNDAVSDSSEAGDEPHLSD 719 (912)
Q Consensus 640 g~P~~~~i~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 719 (912)
T Consensus 319 -------------------------------------------------------------------------------- 318 (476)
T 3mhs_A 319 -------------------------------------------------------------------------------- 318 (476)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHC
Q ss_conf 60389844999853456888886799997199994373658533233220000002333345899996589999998508
Q 002523 720 DFQFYRLDSIRPTEIKMNEPLSISDFAKPLTIHVQWAEKMIEKYDTCLLSSLMEVCKPQLFTRMPPESVSLYKCLEAFLK 799 (912)
Q Consensus 720 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~isL~dCL~~F~~ 799 (912)
.+|++||+.|++
T Consensus 319 --------------------------------------------------------------------~sl~~~L~~~~~ 330 (476)
T 3mhs_A 319 --------------------------------------------------------------------KKLYECLDSFHK 330 (476)
T ss_dssp --------------------------------------------------------------------CBHHHHHHHHHC
T ss_pred --------------------------------------------------------------------HHHHHHHHHHCC
T ss_conf --------------------------------------------------------------------689999998638
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCEEEEEEEEEEECC-CEECCCCEEEECCCCCCCCCCCCCCCCC------
Q ss_conf 665799898899776666302799994018951599885458707-3001231379568999898864335899------
Q 002523 800 EEPLGPEDMWYCPRCKKHWQASKKLDLWRSPDILVIHLKRFSFSR-YFKSKLDTYVDFPIDDLDLSNYVCCKNS------ 872 (912)
Q Consensus 800 ~E~L~~~d~wyC~~Ck~~~~AtKk~~lw~lP~iLiIHLKRF~~~~-~~~~Ki~~~V~FPi~~LDls~~v~~~~~------ 872 (912)
+|.|++++ |+|++|++.+.|+|++.|+++|+||+||||||.+.. +...|+++.|.|| ..|||++|+.....
T Consensus 331 ~E~l~~~~-~~C~~C~~~~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~K~~~~V~fP-~~Ldl~~~~~~~~~~~~~~~ 408 (476)
T 3mhs_A 331 KEQLKDFN-YHCGECNSTQDAIKQLGIHKLPSVLVLQLKRFEHLLNGSNRKLDDFIEFP-TYLNMKNYCSTKEKDKHSEN 408 (476)
T ss_dssp CEECSSCC-CEETTTTEECCCEEEEEEEEBCSEEEEEECCEEECTTSCEEECCCCCBCC-SEEECGGGBSCCBCCC--CC
T ss_pred HHHCCCCC-CCCCCCCCCCCEEEEEECCCCCCCEEEEEEECCCCCCCCEEECCEEECCC-CEEECHHHCCCCCCCCCCCC
T ss_conf 42214778-76886688565789987014971139984402154899717898787389-70003432375323432234
Q ss_pred --CCCCCEEEEEEEEEEECCCCCEEEEEEEE--CCEEEEE
Q ss_conf --99961999999996220799628999981--8928899
Q 002523 873 --QLSNRYVLYAISNHYGGMGGGHYTAFVDV--SCVYSFH 908 (912)
Q Consensus 873 --~~~~~YdL~AVinH~G~l~gGHYtAy~k~--~~~~~f~ 908 (912)
.....|+|+|||+|.|++++|||+||+|. +.||.||
T Consensus 409 ~~~~~~~Y~L~avv~H~G~~~~GHY~a~vr~~~~~W~~fn 448 (476)
T 3mhs_A 409 GKVPDIIYELIGIVSHKGTVNEGHYIAFCKISGGQWFKFN 448 (476)
T ss_dssp CBCCCEEEEEEEEEEEEECSSSEEEEEEEECTTSCEEEEE
T ss_pred CCCCCCCEEEEEEEEECCCCCCCCEEEEEECCCCCEEEEE
T ss_conf 6789973899999996899988754999988989189994
No 10
>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9
Probab=1.00 E-value=1 Score=437.54 Aligned_cols=269 Identities=22% Similarity=0.284 Sum_probs=229.4
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCC----CCHHHHHHHHHHHHHHCCCCCCCCCH
Q ss_conf 45665333214899620799999994784799999731012234579999----81589999999998722899986582
Q 002523 334 VCLLGLTGLRNLGNTCFMNSAIQCLAHTPEIVDYFLGDYQKEINYENPLG----LNGELALAFGDLLRKLWAPGGIPVAP 409 (912)
Q Consensus 334 ~~~~g~~GL~NlGNTCYmNS~LQ~L~~~p~l~~~ll~~~~~~~n~~n~~~----~~~~l~~~l~~L~~~l~~~~~~~i~P 409 (912)
...++++||.|+||||||||+||||+++|+|+++++.... ..+..++.+ ...+++.+|+.|+..||.+...+++|
T Consensus 19 ~~~~~~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~ll~~~~-~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~~~~~v~p 97 (415)
T 1vjv_A 19 QFAQLPVGFKNMGNTCYLNATLQALYRVNDLRDMILNYNP-SQGVSNSGAQDEEIHKQIVIEMKRCFENLQNKSFKSVLP 97 (415)
T ss_dssp CCCCCCCEECCCSSCHHHHHHHHHHHHSHHHHHHHHTCCG-GGCCSCTTSTTHHHHHHHHHHHHHHHHHHHCC-CCEECC
T ss_pred CCCCCCCCCEECCCCCHHHHHHHHHHCCHHHHHHHHHCCC-CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCH
T ss_conf 3578988877388513999999999747999999971265-446677643344411389999999999986079984377
Q ss_pred HHHHHHHHHHCCCCC-------CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 999999962189999-------8886779999999999899873200268853223578998588989999832037886
Q 002523 410 RMFKLKLANFAPQFS-------GYNQHDSQEFLAFLLDGLHEDLNRVKCKPYLEAKDAEGQPEEEVAEEYWRNHRARNDS 482 (912)
Q Consensus 410 ~~~~~~l~~~~p~F~-------~~~QqDA~EfL~~LLd~L~eel~~~~~k~~~~~~d~~~~~d~~~a~e~w~~~~~~n~S 482 (912)
..|+.+++...|+|. +++||||||||.+||+.||++++. +
T Consensus 98 ~~~~~~l~~~~~~f~~~~~~~~~~~QqDa~Efl~~lLd~L~~~~~~---------------------------------~ 144 (415)
T 1vjv_A 98 VVLLNTLRKCYPQFAERDSQGGFYKQQDAEELFTQLFHSMSIVFGD---------------------------------K 144 (415)
T ss_dssp HHHHHHHHHHCGGGGCBC----CBCCCCHHHHHHHHHHHHHHHHTH---------------------------------H
T ss_pred HHHHHHHHHHCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCC---------------------------------C
T ss_conf 9999999875850210466777766668999999999999987343---------------------------------4
Q ss_pred CCCCCCCEEEEEEEECCCCCCEE--EEEECCEEEEECCCCCCCCCEEEEEECCCCCCCCEEEEEEECCCCCHHHHHHHHH
Q ss_conf 21235447999899618999843--5650642287418999866319999918999977006999178888899999998
Q 002523 483 IIVDLCQGQYRSMLVCPVCNKVS--VTFDPLMYLSLPIPSTTMRTMTVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALS 560 (912)
Q Consensus 483 iI~~lF~G~~~s~l~C~~C~~~s--~~~e~F~~LsLpip~~~~~~~~v~~~~~d~~~~p~~~~v~~~k~~~~~dl~~~l~ 560 (912)
+|.++|+ +++++++|..|++++ .++|+|++|+|+||..
T Consensus 145 ~i~~~F~-~~~~~~~C~~C~~~s~s~~~e~f~~Lsl~i~~~--------------------------------------- 184 (415)
T 1vjv_A 145 FSEDFRI-QFKTTIKDTANDNDITVKENESDSKLQCHISGT--------------------------------------- 184 (415)
T ss_dssp HHTTTCE-EEEEEEEETTEEEEEEEECCCEESCEEECCCTT---------------------------------------
T ss_pred HHHHHHH-HHEEEEEECCCCCCCCCCCCCCCEEEEECCCCC---------------------------------------
T ss_conf 6999998-611799977999874631354543665125666---------------------------------------
Q ss_pred HHCCCCCCCCEEEEEEECCEEEEECCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEEECCCCCCCCCCCCCCEEEEC
Q ss_conf 55078997727888875360255026974324465789918999838999999327786310211112455555505514
Q 002523 561 TKCFLRNHEKLLVAEIYRSKIFRVLDEPSDLLGLIRDEDKLVAYRLPKDSETPSLVLFMHERKEESCHLGRLSLEWKIFG 640 (912)
Q Consensus 561 ~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~i~~~d~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg 640 (912)
T Consensus 185 -------------------------------------------------------------------------------- 184 (415)
T 1vjv_A 185 -------------------------------------------------------------------------------- 184 (415)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 22489717899866899999986187668889999864223778899964224666655789778898778999998996
Q 002523 641 TPLVGRLSDLTNGSDIRKLFLKLLDPFLMPVGDDSDFSDEAGKIDNGDSIVEDVTSSRVSDNDAVSDSSEAGDEPHLSDD 720 (912)
Q Consensus 641 ~P~~~~i~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 720 (912)
T Consensus 185 -------------------------------------------------------------------------------- 184 (415)
T 1vjv_A 185 -------------------------------------------------------------------------------- 184 (415)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred EEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCC
Q ss_conf 03898449998534568888867999971999943736585332332200000023333458999965899999985086
Q 002523 721 FQFYRLDSIRPTEIKMNEPLSISDFAKPLTIHVQWAEKMIEKYDTCLLSSLMEVCKPQLFTRMPPESVSLYKCLEAFLKE 800 (912)
Q Consensus 721 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~isL~dCL~~F~~~ 800 (912)
..+|.+||+.|+.+
T Consensus 185 ------------------------------------------------------------------~~~l~~~L~~~~~e 198 (415)
T 1vjv_A 185 ------------------------------------------------------------------TNFMRNGLLEGLNE 198 (415)
T ss_dssp ------------------------------------------------------------------CCBHHHHHHHHHEE
T ss_pred ------------------------------------------------------------------CCHHHHHHHHHHHH
T ss_conf ------------------------------------------------------------------12389999987445
Q ss_pred CCCCCCCCCCCCCCCCCCCEEEEEEEECCCCEEEEEEEEEEECC--CEECCCCEEEECCCCCCCCCCCCCCC--------
Q ss_conf 65799898899776666302799994018951599885458707--30012313795689998988643358--------
Q 002523 801 EPLGPEDMWYCPRCKKHWQASKKLDLWRSPDILVIHLKRFSFSR--YFKSKLDTYVDFPIDDLDLSNYVCCK-------- 870 (912)
Q Consensus 801 E~L~~~d~wyC~~Ck~~~~AtKk~~lw~lP~iLiIHLKRF~~~~--~~~~Ki~~~V~FPi~~LDls~~v~~~-------- 870 (912)
| + .|+|+.|+..+.|+|++.|+++|+||+||||||.|.. ..+.|+++.|.|| ..|||++|+...
T Consensus 199 ~-i----~~~c~~c~~~~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~Ki~~~V~FP-~~Ldl~~~~~~~~~~~~~~~ 272 (415)
T 1vjv_A 199 K-I----EKRSDLTGANSIYSVEKKISRLPKFLTVQYVRFFWKRSTNKKSKILRKVVFP-FQLDVADMLTPEYAAEKVKV 272 (415)
T ss_dssp C--------------CCCCEEEEEEEEECBSEEEEEECCEEEETTTTEEEECCCCCBCC-SEEECGGGBCHHHHHHHHHH
T ss_pred H-H----HHCCCCCCCCCCEEEEEECCCCCCEEEEEEEEEEEECCCCCCHHHCCCCCCC-CEEEHHHHCCHHHHHHHHHH
T ss_conf 5-5----3146121786427888770269971599998899837888404316764799-57676784283332221215
Q ss_pred ------------------------------------------------------------------CCCCCCCEEEEEEE
Q ss_conf ------------------------------------------------------------------99999619999999
Q 002523 871 ------------------------------------------------------------------NSQLSNRYVLYAIS 884 (912)
Q Consensus 871 ------------------------------------------------------------------~~~~~~~YdL~AVi 884 (912)
....+..|+|+|||
T Consensus 273 r~~~~~~~~~~~e~~~~~k~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVv 352 (415)
T 1vjv_A 273 RDELRKVEKEKNEKEREIKRRKFDPSSSENVMTPREQYETQVALNESEKDQWLEEYKKHFPPNLEKGENPSCVYNLIGVI 352 (415)
T ss_dssp HHHHHHHHHHHHHC----------------CCCHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTCCTTBCSSSEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEE
T ss_conf 79999875333345665531022555444434531022201256776554433320533343232356788438899999
Q ss_pred EEEE-CCCCCEEEEEEEE---C-CEEEEE
Q ss_conf 9622-0799628999981---8-928899
Q 002523 885 NHYG-GMGGGHYTAFVDV---S-CVYSFH 908 (912)
Q Consensus 885 nH~G-~l~gGHYtAy~k~---~-~~~~f~ 908 (912)
+|.| ++.+|||+||+|+ + .||.||
T Consensus 353 ~H~G~s~~~GHY~a~vr~~~~~~~W~~fn 381 (415)
T 1vjv_A 353 THQGANSESGHYQAFIRDELDENKWYKFN 381 (415)
T ss_dssp EEESSSTTSSEEEEEEECSSCTTCEEEEE
T ss_pred EECCCCCCCCCEEEEEECCCCCCCEEEEE
T ss_conf 93589999988799994788899489967
Done!