BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002525
(912 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3A8R|A Chain A, The Structure Of The N-Terminal Regulatory Domain Of A
Plant Nadph Oxidase
pdb|3A8R|B Chain B, The Structure Of The N-Terminal Regulatory Domain Of A
Plant Nadph Oxidase
Length = 179
Score = 206 bits (525), Expect = 3e-53, Method: Composition-based stats.
Identities = 103/178 (57%), Positives = 139/178 (78%), Gaps = 6/178 (3%)
Query: 145 TKSAAAHALKGLKFITTKTGAAGNGWPAVEKRYNELAITTSDGLLHCSMFGECIGMNKES 204
TKS+AA ALKGL+F+T K G +GW AVEKR+N+L + DG+L S FG+CIGM+ S
Sbjct: 4 TKSSAAVALKGLQFVTAKVG--NDGWAAVEKRFNQLQV---DGVLLRSRFGKCIGMDG-S 57
Query: 205 KEFAGELFRGLCRKHNISGDSINKAQLKEFWDQISDESFDSRLQTFFDMVDTDADGRITE 264
EFA ++F L RK I + K +LK+F++Q++D+ FD+RL+TFFDMVD +ADGR+T
Sbjct: 58 DEFAVQMFDSLARKRGIVKQVLTKDELKDFYEQLTDQGFDNRLRTFFDMVDKNADGRLTA 117
Query: 265 EEVKEIISLSASANKLSNIQKQAEEYAAMIMEELDPDNAGYIMIHNLETLLLQAPNQS 322
EEVKEII+LSASANKLS I+++A+EY A+IMEELDP N GYI + +LE LLLQ+P+++
Sbjct: 118 EEVKEIIALSASANKLSKIKERADEYTALIMEELDPTNLGYIEMEDLEALLLQSPSEA 175
>pdb|3A1F|A Chain A, The Crystal Structure Of Nadph Binding Domain Of
Gp91(Phox)
Length = 186
Score = 117 bits (292), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 70/206 (33%), Positives = 111/206 (53%), Gaps = 23/206 (11%)
Query: 710 ILIDGPYGAPAQDYKKYDVVLLVGLGIGATPMISIVKDIINNMKSEDNNLESGLTVXXXX 769
I +DGP+G ++D Y+VV+LVG GIG TP SI+K + + NL+
Sbjct: 1 IAVDGPFGTASEDVFSYEVVMLVGAGIGVTPFASILKSVWYKYCNNATNLK--------- 51
Query: 770 XXXXXXTRKAYFYWVTREQGSFEWFKGIMNEV-AEMDEKRVIELHNYCTSVYEEGDARSA 828
+K YFYW+ R+ +FEWF ++ + ++M E+ +Y ++Y G S
Sbjct: 52 ------LKKIYFYWLCRDTHAFEWFADLLQLLESQMQERNNAGFLSY--NIYLTGWDESQ 103
Query: 829 LIAMLQSLHHAKNGVDVVSGTRVKSHFAKPNWRQVYKRIALHHPDSRIGVFYCGAPALTK 888
A ++HH + DV++G + K+ + +PNW +K IA HP++RIGVF CG AL +
Sbjct: 104 --ANHFAVHHDEEK-DVITGLKQKTLYGRPNWDNEFKTIASQHPNTRIGVFLCGPEALAE 160
Query: 889 EL--RQLASDFSHKTSTKFEFHKENF 912
L + +++ S F F+KENF
Sbjct: 161 TLSKQSISNSESGPRGVHFIFNKENF 186
>pdb|3PAT|A Chain A, Comparison Between The Crystal And The Solution Structures
Of The Ef Hand Parvalbumin
pdb|2PAS|A Chain A, Comparison Between The Crystal And The Solution Structures
Of The Ef Hand Parvalbumin
pdb|1PVA|A Chain A, Comparison Between The Crystal And The Solution Structures
Of The Ef Hand Parvalbumin (alpha Component From Pike
Muscle)
pdb|1PVA|B Chain B, Comparison Between The Crystal And The Solution Structures
Of The Ef Hand Parvalbumin (alpha Component From Pike
Muscle)
Length = 110
Score = 36.2 bits (82), Expect = 0.088, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 7/73 (9%)
Query: 247 LQTFFDMVDTDADGRITEEEVKEII-SLSASANKLSNIQKQAEEYAAMIMEELDPDNAGY 305
++ F +D DA G I EEE+K ++ S +A L++ + +A ++ D D G
Sbjct: 44 VKKVFKAIDADASGFIEEEELKFVLKSFAADGRDLTDAETKA------FLKAADKDGDGK 97
Query: 306 IMIHNLETLLLQA 318
I I ETL+ +A
Sbjct: 98 IGIDEFETLVHEA 110
>pdb|2KYC|A Chain A, Solution Structure Of Ca-Free Chicken Parvalbumin 3 (Cpv3)
pdb|2KYF|A Chain A, Solution Structure Of Calcium-Bound Cpv3
Length = 108
Score = 33.9 bits (76), Expect = 0.40, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 6/81 (7%)
Query: 194 FGECIGMNKESKEFAGELFRGLCRKHNISGDSINKAQLKEFWDQISDES---FDSRLQTF 250
F + GM+K+S E+FR L N I + +LK F + + S +TF
Sbjct: 29 FFQISGMSKKSSSQLKEIFRIL---DNDQSGFIEEDELKYFLQRFESGARVLTASETKTF 85
Query: 251 FDMVDTDADGRITEEEVKEII 271
D D DG+I EE +E++
Sbjct: 86 LAAADHDGDGKIGAEEFQEMV 106
>pdb|3K21|A Chain A, Crystal Structure Of Carboxy-Terminus Of Pfc0420w
Length = 191
Score = 33.1 bits (74), Expect = 0.75, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Query: 251 FDMVDTDADGRITEEEVKEIISLSASANKLSNIQKQAEEYAAMIMEELDPDNAGYIMIHN 310
F + D D DG IT E+ I+ + NK NI ++ ++ ++D +N G I H
Sbjct: 128 FRVFDVDNDGEITTAELAHILY---NGNKKGNITQRDVNRVKRMIRDVDKNNDGKIDFHE 184
Query: 311 LETLL 315
++
Sbjct: 185 FSEMM 189
>pdb|1S6I|A Chain A, Ca2+-Regulatory Region (Cld) From Soybean
Calcium-Dependent Protein Kinase-Alpha (Cdpk) In The
Presence Of Ca2+ And The Junction Domain (Jd)
Length = 188
Score = 32.7 bits (73), Expect = 0.89, Method: Composition-based stats.
Identities = 22/88 (25%), Positives = 38/88 (43%), Gaps = 8/88 (9%)
Query: 225 SINKAQLKEFWDQISDESFDSRLQTFFDMVDTDADGRITEEEVKEIISLSASANKLSNIQ 284
+I +LK+ ++ E +S ++ D D D G I + E I+ + NKL
Sbjct: 26 TITFDELKDGLKRVGSELMESEIKDLMDAADIDKSGTI---DYGEFIAATVHLNKL---- 78
Query: 285 KQAEEYAAMIMEELDPDNAGYIMIHNLE 312
+ EE D D +GYI + ++
Sbjct: 79 -EREENLVSAFSYFDKDGSGYITLDEIQ 105
Score = 30.0 bits (66), Expect = 6.0, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 9/71 (12%)
Query: 236 DQISDESFDSRLQTFFDMVDTDADGRITEEEVKEIISLSASANKLSNIQKQAEEYAAMIM 295
+++S+E L+ F M+DTD G IT +E+K+ + S S I+ +M
Sbjct: 2 ERLSEEEIGG-LKELFKMIDTDNSGTITFDELKDGLKRVGSELMESEIKD--------LM 52
Query: 296 EELDPDNAGYI 306
+ D D +G I
Sbjct: 53 DAADIDKSGTI 63
>pdb|5PAL|A Chain A, Crystal Structure Of The Unique Parvalbumin Component From
Muscle Of The Leopard Shark (Triakis Semifasciata). The
First X-Ray Study Of An Alpha-Parvalbumin
Length = 109
Score = 32.0 bits (71), Expect = 1.6, Method: Composition-based stats.
Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 7/76 (9%)
Query: 244 DSRLQTFFDMVDTDADGRITEEEVKEIIS-LSASANKLSNIQKQAEEYAAMIMEELDPDN 302
D++++ F+++D D G I EEE+K ++ SA L++ + +A ++ D D+
Sbjct: 40 DAQVKEVFEILDKDQSGFIEEEELKGVLKGFSAHGRDLNDTETKA------LLAAGDSDH 93
Query: 303 AGYIMIHNLETLLLQA 318
G I ++ QA
Sbjct: 94 DGKIGADEFAKMVAQA 109
>pdb|2NXQ|A Chain A, Crystal Structure Of Calcium Binding Protein 1 From
Entamoeba Histolytica: A Novel Arrangement Of Ef Hand
Motifs
pdb|2NXQ|B Chain B, Crystal Structure Of Calcium Binding Protein 1 From
Entamoeba Histolytica: A Novel Arrangement Of Ef Hand
Motifs
pdb|3PX1|A Chain A, Structure Of Calcium Binding Protein-1 From Entamoeba
Histolytica In Complex With Strontium
pdb|3PX1|B Chain B, Structure Of Calcium Binding Protein-1 From Entamoeba
Histolytica In Complex With Strontium
pdb|3QJK|A Chain A, Structure Of Calcium Binding Protein-1 From Entamoeba
Histolytica In Complex With Lead
pdb|3QJK|B Chain B, Structure Of Calcium Binding Protein-1 From Entamoeba
Histolytica In Complex With Lead
pdb|3ULG|A Chain A, Crystal Structure Of Calcium-Binding Protein-1 From
Entamoeba Histolytica In Complex With Barium
pdb|3ULG|B Chain B, Crystal Structure Of Calcium-Binding Protein-1 From
Entamoeba Histolytica In Complex With Barium
Length = 134
Score = 32.0 bits (71), Expect = 1.7, Method: Composition-based stats.
Identities = 21/89 (23%), Positives = 40/89 (44%), Gaps = 15/89 (16%)
Query: 226 INKAQLKEFWDQISDESFDSR---LQTFFDMVDTDADGRITEEEVKEIISLSASANKLSN 282
I++ + +F+ I + L+ + ++D D DG++T+EEV K
Sbjct: 53 IDQNEFAKFYGSIQGQDLSDDKIGLKVLYKLMDVDGDGKLTKEEVTSFF-------KKHG 105
Query: 283 IQKQAEEYAAMIMEELDPDNAGYIMIHNL 311
I+K AE+ + + D + GYI +
Sbjct: 106 IEKVAEQ-----VMKADANGDGYITLEEF 129
>pdb|1JFJ|A Chain A, Nmr Solution Structure Of An Ef-Hand Calcium Binding
Protein From Entamoeba Histolytica
pdb|1JFK|A Chain A, Minimum Energy Representative Structure Of A Calcium Bound
Ef-hand Protein From Entamoeba Histolytica
Length = 134
Score = 32.0 bits (71), Expect = 1.7, Method: Composition-based stats.
Identities = 21/89 (23%), Positives = 40/89 (44%), Gaps = 15/89 (16%)
Query: 226 INKAQLKEFWDQISDESFDSR---LQTFFDMVDTDADGRITEEEVKEIISLSASANKLSN 282
I++ + +F+ I + L+ + ++D D DG++T+EEV K
Sbjct: 53 IDQNEFAKFYGSIQGQDLSDDKIGLKVLYKLMDVDGDGKLTKEEVTSFF-------KKHG 105
Query: 283 IQKQAEEYAAMIMEELDPDNAGYIMIHNL 311
I+K AE+ + + D + GYI +
Sbjct: 106 IEKVAEQ-----VMKADANGDGYITLEEF 129
>pdb|3Q5I|A Chain A, Crystal Structure Of Pbanka_031420
Length = 504
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 25/39 (64%)
Query: 244 DSRLQTFFDMVDTDADGRITEEEVKEIISLSASANKLSN 282
+ RL+ F++ DTD G+IT+EE+ + L++ + K N
Sbjct: 434 EERLRRAFNLFDTDKSGKITKEELANLFGLTSISEKTWN 472
Score = 29.6 bits (65), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 247 LQTFFDMVDTDADGRITEEEVKEIIS-LSASANKLSNIQKQAEEYAAMIMEELDPDNAGY 305
L F +D + DG++ ++E+ E + L N+L + K EE I++E+D D GY
Sbjct: 357 LTDIFKKLDKNGDGQLDKKELIEGYNVLRNFKNELGEL-KNVEEEVDNILKEVDFDKNGY 415
Query: 306 I 306
I
Sbjct: 416 I 416
>pdb|1TRF|A Chain A, Solution Structure Of The Tr1c Fragment Of Skeletal Muscle
Troponin-C
Length = 76
Score = 32.0 bits (71), Expect = 1.8, Method: Composition-based stats.
Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 8/66 (12%)
Query: 241 ESFDSRLQTFFDMVDTDADGRITEEEVKEIISLSASANKLSNIQKQAEEYAAMIMEELDP 300
E + + FDM D D G I+ +E+ ++ + Q +E I+EE+D
Sbjct: 5 EEMIAEFKAAFDMFDADGGGDISTKELGTVMRMLG--------QNPTKEELDAIIEEVDE 56
Query: 301 DNAGYI 306
D +G I
Sbjct: 57 DGSGTI 62
>pdb|1TNW|A Chain A, Nmr Solution Structure Of Calcium Saturated Skeletal
Muscle Troponin C
pdb|1TNX|A Chain A, Nmr Solution Structure Of Calcium Saturated Skeletal
Muscle Troponin C
Length = 162
Score = 31.6 bits (70), Expect = 2.0, Method: Composition-based stats.
Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 8/66 (12%)
Query: 241 ESFDSRLQTFFDMVDTDADGRITEEEVKEIISLSASANKLSNIQKQAEEYAAMIMEELDP 300
E + + FDM D D G I+ +E+ ++ + Q +E I+EE+D
Sbjct: 16 EEMIAEFKAAFDMFDADGGGDISTKELGTVMRMLG--------QNPTKEELDAIIEEVDE 67
Query: 301 DNAGYI 306
D +G I
Sbjct: 68 DGSGTI 73
>pdb|5TNC|A Chain A, Refined Crystal Structure Of Troponin C From Turkey
Skeletal Muscle At 2.0 Angstroms Resolution
Length = 162
Score = 31.6 bits (70), Expect = 2.1, Method: Composition-based stats.
Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 8/66 (12%)
Query: 241 ESFDSRLQTFFDMVDTDADGRITEEEVKEIISLSASANKLSNIQKQAEEYAAMIMEELDP 300
E + + FDM D D G I+ +E+ ++ + Q +E I+EE+D
Sbjct: 16 EEMIAEFKAAFDMFDADGGGDISTKELGTVMRMLG--------QNPTKEELDAIIEEVDE 67
Query: 301 DNAGYI 306
D +G I
Sbjct: 68 DGSGTI 73
>pdb|1YTZ|C Chain C, Crystal Structure Of Skeletal Muscle Troponin In The Ca2+-
Activated State
pdb|1YV0|C Chain C, Crystal Structure Of Skeletal Muscle Troponin In The Ca2+-
Free State
pdb|1NCX|A Chain A, Troponin C
pdb|1NCY|A Chain A, Troponin-C, Complex With Manganese
pdb|1NCZ|A Chain A, Troponin C
pdb|1TOP|A Chain A, Structure Of Chicken Skeletal Muscle Troponin-C At 1.78
Angstroms Resolution
Length = 162
Score = 31.6 bits (70), Expect = 2.1, Method: Composition-based stats.
Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 8/66 (12%)
Query: 241 ESFDSRLQTFFDMVDTDADGRITEEEVKEIISLSASANKLSNIQKQAEEYAAMIMEELDP 300
E + + FDM D D G I+ +E+ ++ + Q +E I+EE+D
Sbjct: 16 EEMIAEFKAAFDMFDADGGGDISTKELGTVMRMLG--------QNPTKEELDAIIEEVDE 67
Query: 301 DNAGYI 306
D +G I
Sbjct: 68 DGSGTI 73
>pdb|4TNC|A Chain A, Refined Structure Of Chicken Skeletal Muscle Troponin C In
The Two-Calcium State At 2-Angstroms Resolution
Length = 162
Score = 31.6 bits (70), Expect = 2.1, Method: Composition-based stats.
Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 8/66 (12%)
Query: 241 ESFDSRLQTFFDMVDTDADGRITEEEVKEIISLSASANKLSNIQKQAEEYAAMIMEELDP 300
E + + FDM D D G I+ +E+ ++ + Q +E I+EE+D
Sbjct: 16 EEMIAEFKAAFDMFDADGGGDISTKELGTVMRMLG--------QNPTKEELDAIIEEVDE 67
Query: 301 DNAGYI 306
D +G I
Sbjct: 68 DGSGTI 73
>pdb|1AVS|A Chain A, X-Ray Crystallographic Study Of Calcium-Saturated N-
Terminal Domain Of Troponin C
pdb|1AVS|B Chain B, X-Ray Crystallographic Study Of Calcium-Saturated N-
Terminal Domain Of Troponin C
pdb|1BLQ|A Chain A, Structure And Interaction Site Of The Regulatory Domain Of
Troponin-C When Complexed With The 96-148 Region Of
Troponin-I, Nmr, 29 Structures
pdb|1SKT|A Chain A, Solution Structure Of Apo N-Domain Of Troponin C, Nmr, 40
Structures
pdb|1TNP|A Chain A, Structures Of The Apo And Calcium Troponin-C Regulatory
Domains: The Muscle Contraction Switch
pdb|1TNQ|A Chain A, Structures Of The Apo And Calcium Troponin-C Regulatory
Domains: The Muscle Contraction Switch
pdb|1ZAC|A Chain A, N-Domain Of Troponin C From Chicken Skeletal Muscle, Nmr,
Minimized Average Structure
Length = 90
Score = 31.6 bits (70), Expect = 2.1, Method: Composition-based stats.
Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 8/66 (12%)
Query: 241 ESFDSRLQTFFDMVDTDADGRITEEEVKEIISLSASANKLSNIQKQAEEYAAMIMEELDP 300
E + + FDM D D G I+ +E+ ++ + Q +E I+EE+D
Sbjct: 16 EEMIAEFKAAFDMFDADGGGDISTKELGTVMRMLG--------QNPTKEELDAIIEEVDE 67
Query: 301 DNAGYI 306
D +G I
Sbjct: 68 DGSGTI 73
>pdb|2W49|0 Chain 0, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W49|3 Chain 3, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W49|6 Chain 6, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W49|9 Chain 9, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W4U|0 Chain 0, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Length Step
pdb|2W4U|3 Chain 3, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Length Step
pdb|2W4U|6 Chain 6, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Length Step
pdb|2W4U|9 Chain 9, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Length Step
Length = 159
Score = 31.6 bits (70), Expect = 2.1, Method: Composition-based stats.
Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 8/66 (12%)
Query: 241 ESFDSRLQTFFDMVDTDADGRITEEEVKEIISLSASANKLSNIQKQAEEYAAMIMEELDP 300
E + + FDM D D G I+ +E+ ++ + Q +E I+EE+D
Sbjct: 13 EEMIAEFKAAFDMFDADGGGDISTKELGTVMRMLG--------QNPTKEELDAIIEEVDE 64
Query: 301 DNAGYI 306
D +G I
Sbjct: 65 DGSGTI 70
>pdb|1MAI|A Chain A, Structure Of The Pleckstrin Homology Domain From
Phospholipase C Delta In Complex With Inositol
Trisphosphate
Length = 131
Score = 30.8 bits (68), Expect = 3.3, Method: Composition-based stats.
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 6/75 (8%)
Query: 86 HEDPELSLLAKKTLEINNKSSSFRSSLFRNTSSHIKQVSQELKRFASLTRRPSSRRF--- 142
+DP+L L K + + KSSS+R F K + QE ++ + R P S+ F
Sbjct: 5 QDDPDLQALLKGSQLLKVKSSSWRRERFYKLQEDCKTIWQESRK---VMRSPESQLFSIE 61
Query: 143 DRTKSAAAHALKGLK 157
D + H +GL+
Sbjct: 62 DIQEVRMGHRTEGLE 76
>pdb|1TCF|A Chain A, Crystal Structure Of Calcium-Saturated Rabbit Skeletal
Troponin C
pdb|1TN4|A Chain A, Four Calcium Tnc
pdb|2TN4|A Chain A, Four Calcium Tnc
Length = 159
Score = 30.8 bits (68), Expect = 3.4, Method: Composition-based stats.
Identities = 19/95 (20%), Positives = 40/95 (42%), Gaps = 8/95 (8%)
Query: 241 ESFDSRLQTFFDMVDTDADGRITEEEVKEIISLSASANKLSNIQKQAEEYAAMIMEELDP 300
E + + FDM D D G I+ +E+ ++ + Q +E I+EE+D
Sbjct: 13 EEMIAEFKAAFDMFDADGGGDISVKELGTVMRMLG--------QTPTKEELDAIIEEVDE 64
Query: 301 DNAGYIMIHNLETLLLQAPNQSVRVGDSRILSQML 335
D +G I ++++ + + L+++
Sbjct: 65 DGSGTIDFEEFLVMMVRQMKEDAKGKSEEELAELF 99
>pdb|2BE4|A Chain A, X-ray Structure An Ef-hand Protein From Danio Rerio
Dr.36843
pdb|2Q4U|A Chain A, Ensemble Refinement Of The Crystal Structure Of An Ef-Hand
Protein From Danio Rerio Dr.36843
Length = 272
Score = 30.8 bits (68), Expect = 3.8, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 5/84 (5%)
Query: 236 DQISDESFDSRLQTFFDMVDTDADGRITEEEVKEIISLSASANKLSNIQKQAEEYAAM-- 293
D+I+DE ++F D DGR+ EE+ I L N L +++A ++
Sbjct: 48 DKITDERVQQIKKSFXSAYDATFDGRLQIEELANXI-LPQEENFLLIFRREAPLDNSVEF 106
Query: 294 --IMEELDPDNAGYIMIHNLETLL 315
I + D D++GYI L+ L
Sbjct: 107 XKIWRKYDADSSGYISAAELKNFL 130
>pdb|2BEC|A Chain A, Crystal Structure Of Chp2 In Complex With Its Binding
Region In Nhe1 And Insights Into The Mechanism Of Ph
Regulation
Length = 202
Score = 30.8 bits (68), Expect = 4.0, Method: Composition-based stats.
Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 6/77 (7%)
Query: 233 EFWDQISDESFDSR---LQTFFDMVDTDADGRITEEEVKEIISLSASANKLSNIQKQAEE 289
E D E +SR L F + D D DG+I+ E+ +++ L + ++Q E
Sbjct: 99 ETQDPKKPEPLNSRRNKLHYAFQLYDLDRDGKISRHEMLQVLRLMVG---VQVTEEQLEN 155
Query: 290 YAAMIMEELDPDNAGYI 306
A ++E D D G +
Sbjct: 156 IADRTVQEADEDGDGAV 172
>pdb|3KF9|A Chain A, Crystal Structure Of The SdcenSKMLCK COMPLEX
pdb|3KF9|C Chain C, Crystal Structure Of The SdcenSKMLCK COMPLEX
Length = 149
Score = 30.4 bits (67), Expect = 4.1, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 21/46 (45%)
Query: 226 INKAQLKEFWDQISDESFDSRLQTFFDMVDTDADGRITEEEVKEII 271
I+ LK ++ + D LQ D D D DG + EEE I+
Sbjct: 98 ISFKNLKRVAKELGENMTDEELQEMIDEADRDGDGEVNEEEFFRIM 143
>pdb|1S6J|A Chain A, N-Terminal Region Of The Ca2+-Saturated Calcium Regulatory
Domain (Cld) From Soybean Calcium-Dependent Protein
Kinase- Alpha (Cdpk)
Length = 87
Score = 30.4 bits (67), Expect = 4.2, Method: Composition-based stats.
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 9/75 (12%)
Query: 232 KEFWDQISDESFDSRLQTFFDMVDTDADGRITEEEVKEIISLSASANKLSNIQKQAEEYA 291
K +++S+E L+ F M+DTD G IT +E+K+ + S S I+
Sbjct: 11 KHMAERLSEEEIGG-LKELFKMIDTDNSGTITFDELKDGLKRVGSELMESEIKD------ 63
Query: 292 AMIMEELDPDNAGYI 306
+M+ D D +G I
Sbjct: 64 --LMDAADIDKSGTI 76
>pdb|2GWD|A Chain A, Crystal Structure Of Plant Glutamate Cysteine Ligase In
Complex With Mg2+ And L-glutamate
Length = 449
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 8/59 (13%)
Query: 626 PQGFKYKSGQYMFVNCAAVSPFEWHPFSITSSPGDDYLSVHIRTLGDWTRQLKTVFSEV 684
P F Y++G+Y V+C ++ ++ + PG+ + T DW L T+F EV
Sbjct: 263 PMYFAYRNGKY--VDCTGMTFRQFLAGKLPCLPGE------LPTYNDWENHLTTIFPEV 313
>pdb|2I18|A Chain A, The Refined Structure Of C-Terminal Domain Of An Ef-Hand
Calcium Binding Protein From Entamoeba Histolytica
Length = 64
Score = 30.4 bits (67), Expect = 4.6, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 12/65 (18%)
Query: 247 LQTFFDMVDTDADGRITEEEVKEIISLSASANKLSNIQKQAEEYAAMIMEELDPDNAGYI 306
L+ + ++D D DG++T+EEV K I+K AE+ + + D + GYI
Sbjct: 7 LKVLYKLMDVDGDGKLTKEEVTSFF-------KKHGIEKVAEQ-----VMKADANGDGYI 54
Query: 307 MIHNL 311
+
Sbjct: 55 TLEEF 59
>pdb|3LMK|A Chain A, Ligand Binding Domain Of Metabotropoc Glutamate Receptor
Mglur5 Complexed With Glutamate
pdb|3LMK|B Chain B, Ligand Binding Domain Of Metabotropoc Glutamate Receptor
Mglur5 Complexed With Glutamate
Length = 492
Score = 30.4 bits (67), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 13/67 (19%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 815 YCTSVYEEGDARSALIAMLQSLHHAKNGVDVVSGTRVKSHFAKPNWRQVYKRIALHHPDS 874
Y ++V+ EG+ + + + + AK G+ + ++ S+ + ++ ++ K++ H P +
Sbjct: 200 YVSAVHTEGNYGESGMEAFKDMS-AKEGISIAHSYKIYSNAGEQSFDKLLKKLTSHLPKA 258
Query: 875 RIGVFYC 881
R+ +C
Sbjct: 259 RVVACFC 265
>pdb|1OMD|A Chain A, Structure Of Oncomodulin Refined At 1.85 Angstroms
Resolution. An Example Of Extensive Molecular
Aggregation Via Ca2+
pdb|1RRO|A Chain A, Refinement Of Recombinant Oncomodulin At 1.30 Angstroms
Resolution
pdb|2NLN|A Chain A, Solution Structure Of Calcium-Free Rat Beta-Parvalbumin
Length = 108
Score = 30.4 bits (67), Expect = 5.0, Method: Composition-based stats.
Identities = 19/81 (23%), Positives = 39/81 (48%), Gaps = 6/81 (7%)
Query: 194 FGECIGMNKESKEFAGELFRGLCRKHNISGDSINKAQLKEFWDQISDES---FDSRLQTF 250
F + G++K S ++FR + N ++ +LK F + ++ +S ++
Sbjct: 29 FFQTSGLSKMSASQVKDIFRFI---DNDQSGYLDGDELKYFLQKFQSDARELTESETKSL 85
Query: 251 FDMVDTDADGRITEEEVKEII 271
D D D DG+I +E +E++
Sbjct: 86 MDAADNDGDGKIGADEFQEMV 106
>pdb|3QRX|A Chain A, Chlamydomonas Reinhardtii Centrin Bound To Melittin
Length = 169
Score = 30.0 bits (66), Expect = 5.4, Method: Composition-based stats.
Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 8/75 (10%)
Query: 241 ESFDSRLQTFFDMVDTDADGRITEEEVKEIISLSASANKLSNIQKQAEEYAAMIMEELDP 300
E ++ FD+ DTD G I +E+K A + + + EE MI E+D
Sbjct: 24 EEQKQEIREAFDLFDTDGSGTIDAKELK-------VAMRALGFEPKKEEIKKMI-SEIDK 75
Query: 301 DNAGYIMIHNLETLL 315
D +G I T++
Sbjct: 76 DGSGTIDFEEFLTMM 90
>pdb|2AMI|A Chain A, Solution Structure Of The Calcium-Loaded N-Terminal Sensor
Domain Of Centrin
Length = 96
Score = 30.0 bits (66), Expect = 5.8, Method: Composition-based stats.
Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 8/75 (10%)
Query: 241 ESFDSRLQTFFDMVDTDADGRITEEEVKEIISLSASANKLSNIQKQAEEYAAMIMEELDP 300
E ++ FD+ DTD G I +E+K A + + + EE MI E+D
Sbjct: 26 EEQKQEIREAFDLFDTDGSGTIDAKELK-------VAMRALGFEPKKEEIKKMI-SEIDK 77
Query: 301 DNAGYIMIHNLETLL 315
D +G I T++
Sbjct: 78 DGSGTIDFEEFLTMM 92
>pdb|2OBH|A Chain A, Centrin-Xpc Peptide
pdb|2OBH|B Chain B, Centrin-Xpc Peptide
Length = 143
Score = 29.6 bits (65), Expect = 7.3, Method: Composition-based stats.
Identities = 14/46 (30%), Positives = 22/46 (47%)
Query: 226 INKAQLKEFWDQISDESFDSRLQTFFDMVDTDADGRITEEEVKEII 271
I+ LK ++ + D LQ D D D DG ++E+E I+
Sbjct: 96 ISFKNLKRVAKELGENLTDEELQEMIDEADRDGDGEVSEQEFLRIM 141
>pdb|1M39|A Chain A, Solution Structure Of The C-Terminal Fragment (F86-I165)
Of The Human Centrin 2 In Calcium Saturated Form
Length = 89
Score = 29.6 bits (65), Expect = 7.9, Method: Composition-based stats.
Identities = 14/46 (30%), Positives = 22/46 (47%)
Query: 226 INKAQLKEFWDQISDESFDSRLQTFFDMVDTDADGRITEEEVKEII 271
I+ LK ++ + D LQ D D D DG ++E+E I+
Sbjct: 38 ISFKNLKRVAKELGENLTDEELQEMIDEADRDGDGEVSEQEFLRIM 83
>pdb|2A4J|A Chain A, Solution Structure Of The C-Terminal Domain (T94-Y172) Of
The Human Centrin 2 In Complex With A 17 Residues
Peptide (P1-Xpc) From Xeroderma Pigmentosum Group C
Protein
pdb|2K2I|A Chain A, Nmr Solution Structure Of The C-Terminal Domain (T94-Y172)
Of The Human Centrin 2 In Complex With A Repeat Sequence
Of Human Sfi1 (R641-T660)
Length = 79
Score = 29.6 bits (65), Expect = 8.8, Method: Composition-based stats.
Identities = 14/46 (30%), Positives = 22/46 (47%)
Query: 226 INKAQLKEFWDQISDESFDSRLQTFFDMVDTDADGRITEEEVKEII 271
I+ LK ++ + D LQ D D D DG ++E+E I+
Sbjct: 28 ISFKNLKRVAKELGENLTDEELQEMIDEADRDGDGEVSEQEFLRIM 73
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,468,963
Number of Sequences: 62578
Number of extensions: 1049174
Number of successful extensions: 2633
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 2599
Number of HSP's gapped (non-prelim): 58
length of query: 912
length of database: 14,973,337
effective HSP length: 108
effective length of query: 804
effective length of database: 8,214,913
effective search space: 6604790052
effective search space used: 6604790052
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)