Query 002525
Match_columns 912
No_of_seqs 636 out of 4418
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 01:45:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002525.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002525hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0039 Ferric reductase, NADH 100.0 2E-98 4E-103 892.9 46.1 642 224-912 3-646 (646)
2 PLN02631 ferric-chelate reduct 100.0 1.7E-57 3.8E-62 537.3 37.8 335 401-821 151-492 (699)
3 PLN02292 ferric-chelate reduct 100.0 8.7E-57 1.9E-61 532.6 39.9 339 401-821 168-512 (702)
4 PLN02844 oxidoreductase/ferric 100.0 3.4E-56 7.4E-61 528.9 42.3 436 400-912 153-720 (722)
5 COG4097 Predicted ferric reduc 100.0 6.6E-40 1.4E-44 347.7 33.1 379 409-912 47-435 (438)
6 cd06186 NOX_Duox_like_FAD_NADP 100.0 1.7E-32 3.7E-37 287.1 23.7 205 609-912 2-210 (210)
7 cd06216 FNR_iron_sulfur_bindin 99.9 1.8E-26 3.9E-31 247.3 24.5 233 592-912 2-243 (243)
8 cd06195 FNR1 Ferredoxin-NADP+ 99.9 1.5E-26 3.2E-31 247.6 22.5 228 608-912 2-241 (241)
9 cd06189 flavin_oxioreductase N 99.9 1.8E-26 4E-31 244.1 22.7 220 607-912 2-224 (224)
10 cd06197 FNR_like_2 FAD/NAD(P) 99.9 1.4E-26 3E-31 244.2 21.7 192 610-912 2-219 (220)
11 cd06198 FNR_like_3 NAD(P) bind 99.9 3.1E-26 6.7E-31 241.0 23.0 207 616-912 7-215 (216)
12 cd06184 flavohem_like_fad_nad_ 99.9 4.4E-26 9.6E-31 244.8 24.7 231 603-912 6-243 (247)
13 cd06191 FNR_iron_sulfur_bindin 99.9 8.7E-26 1.9E-30 240.0 23.2 226 607-912 2-231 (231)
14 cd06212 monooxygenase_like The 99.9 1.2E-25 2.6E-30 239.1 24.0 225 605-912 2-231 (232)
15 cd06213 oxygenase_e_transfer_s 99.9 1.2E-25 2.6E-30 238.4 23.7 222 605-912 2-227 (227)
16 cd06215 FNR_iron_sulfur_bindin 99.9 9.6E-26 2.1E-30 239.5 23.0 226 606-912 1-231 (231)
17 cd06217 FNR_iron_sulfur_bindin 99.9 1.4E-25 3E-30 239.0 23.6 229 603-912 1-235 (235)
18 PRK08051 fre FMN reductase; Va 99.9 8.4E-26 1.8E-30 240.4 21.9 223 604-912 3-229 (232)
19 cd06210 MMO_FAD_NAD_binding Me 99.9 1.7E-25 3.6E-30 238.6 23.7 225 604-912 2-235 (236)
20 cd06209 BenDO_FAD_NAD Benzoate 99.9 2.2E-25 4.9E-30 236.4 23.8 221 605-912 3-227 (228)
21 cd06190 T4MO_e_transfer_like T 99.9 2.4E-25 5.1E-30 236.8 23.7 227 609-912 2-231 (232)
22 cd06194 FNR_N-term_Iron_sulfur 99.9 1.3E-25 2.9E-30 237.1 21.5 216 609-912 2-221 (222)
23 cd06211 phenol_2-monooxygenase 99.9 2.8E-25 6.1E-30 237.3 23.5 227 604-912 7-238 (238)
24 cd06214 PA_degradation_oxidore 99.9 6.3E-25 1.4E-29 234.9 25.1 230 604-912 2-240 (241)
25 cd06187 O2ase_reductase_like T 99.9 3.2E-25 7E-30 234.4 22.4 221 608-912 1-224 (224)
26 cd06188 NADH_quinone_reductase 99.9 2.5E-25 5.3E-30 243.8 21.6 230 604-912 10-283 (283)
27 TIGR02160 PA_CoA_Oxy5 phenylac 99.9 6.9E-25 1.5E-29 247.8 24.3 230 604-912 2-241 (352)
28 cd00322 FNR_like Ferredoxin re 99.9 6.1E-25 1.3E-29 231.6 21.6 210 610-898 2-214 (223)
29 PRK10684 HCP oxidoreductase, N 99.9 1.3E-24 2.9E-29 243.4 23.1 224 605-912 11-237 (332)
30 cd06196 FNR_like_1 Ferredoxin 99.9 1.6E-24 3.5E-29 228.2 21.4 204 605-898 2-209 (218)
31 PRK07609 CDP-6-deoxy-delta-3,4 99.9 1.7E-24 3.6E-29 243.4 22.9 226 603-912 102-332 (339)
32 PRK13289 bifunctional nitric o 99.9 5.1E-24 1.1E-28 244.8 25.8 233 602-912 153-392 (399)
33 PRK11872 antC anthranilate dio 99.9 3.3E-24 7.1E-29 240.7 22.1 224 603-912 106-335 (340)
34 cd06221 sulfite_reductase_like 99.9 4.2E-24 9.1E-29 230.2 21.6 207 609-899 2-214 (253)
35 cd06183 cyt_b5_reduct_like Cyt 99.9 1E-23 2.2E-28 224.3 23.3 216 607-898 2-225 (234)
36 PRK10926 ferredoxin-NADP reduc 99.9 1.1E-23 2.4E-28 226.2 23.4 215 603-897 4-228 (248)
37 PRK08345 cytochrome-c3 hydroge 99.9 1.7E-23 3.6E-28 229.8 25.1 225 603-899 5-236 (289)
38 cd06218 DHOD_e_trans FAD/NAD b 99.9 1.2E-23 2.6E-28 225.7 23.4 209 609-912 2-213 (246)
39 PRK00054 dihydroorotate dehydr 99.9 1.8E-23 3.9E-28 225.0 24.3 210 603-911 4-213 (250)
40 PF08030 NAD_binding_6: Ferric 99.9 3.4E-24 7.3E-29 213.7 14.0 153 726-895 1-156 (156)
41 PRK05713 hypothetical protein; 99.9 2.1E-23 4.5E-28 231.7 20.9 212 604-912 92-308 (312)
42 COG1018 Hmp Flavodoxin reducta 99.9 9.8E-23 2.1E-27 219.2 24.3 222 602-912 4-230 (266)
43 cd06185 PDR_like Phthalate dio 99.9 5.9E-23 1.3E-27 215.2 22.0 202 610-912 2-210 (211)
44 PLN03116 ferredoxin--NADP+ red 99.9 1E-22 2.2E-27 225.4 24.5 223 604-899 25-283 (307)
45 cd06219 DHOD_e_trans_like1 FAD 99.9 1.1E-22 2.4E-27 218.7 23.4 198 607-897 2-202 (248)
46 cd06220 DHOD_e_trans_like2 FAD 99.9 1E-22 2.2E-27 216.9 22.5 200 606-912 1-200 (233)
47 cd06192 DHOD_e_trans_like FAD/ 99.9 8.7E-23 1.9E-27 218.8 21.8 144 609-801 2-147 (243)
48 PRK08221 anaerobic sulfite red 99.9 1.3E-22 2.9E-27 219.7 23.0 207 605-899 9-216 (263)
49 PRK05464 Na(+)-translocating N 99.9 1.1E-22 2.3E-27 234.0 22.6 230 604-912 134-407 (409)
50 PTZ00274 cytochrome b5 reducta 99.9 1.6E-22 3.6E-27 223.9 23.1 224 600-892 49-280 (325)
51 cd06208 CYPOR_like_FNR These f 99.9 3.5E-22 7.6E-27 219.1 25.0 221 605-898 10-262 (286)
52 TIGR01941 nqrF NADH:ubiquinone 99.9 3.2E-22 6.9E-27 229.7 20.9 230 604-912 130-403 (405)
53 PRK06222 ferredoxin-NADP(+) re 99.9 9.6E-22 2.1E-26 215.0 23.3 200 606-898 2-204 (281)
54 TIGR02911 sulfite_red_B sulfit 99.9 9.9E-22 2.2E-26 212.6 23.2 207 605-899 7-214 (261)
55 PRK05802 hypothetical protein; 99.9 2.4E-21 5.1E-26 214.8 23.8 150 604-802 65-223 (320)
56 cd06182 CYPOR_like NADPH cytoc 99.9 3.7E-21 7.9E-26 208.7 23.0 208 615-899 14-239 (267)
57 cd06200 SiR_like1 Cytochrome p 99.9 4.3E-21 9.3E-26 205.8 22.8 196 617-898 17-226 (245)
58 PLN03115 ferredoxin--NADP(+) r 99.9 4.3E-21 9.3E-26 214.9 23.4 220 607-899 94-343 (367)
59 PTZ00319 NADH-cytochrome B5 re 99.9 4.9E-21 1.1E-25 211.1 22.0 221 601-898 31-291 (300)
60 KOG0534 NADH-cytochrome b-5 re 99.9 2.3E-20 5.1E-25 199.3 22.0 223 602-900 50-279 (286)
61 cd06201 SiR_like2 Cytochrome p 99.9 4E-20 8.8E-25 203.0 23.9 211 602-899 44-269 (289)
62 COG0543 UbiB 2-polyprenylpheno 99.9 4.4E-20 9.4E-25 198.4 23.6 203 605-899 9-216 (252)
63 TIGR03224 benzo_boxA benzoyl-C 99.9 5.4E-20 1.2E-24 210.8 24.2 166 605-818 144-335 (411)
64 PLN02252 nitrate reductase [NA 99.8 5.9E-20 1.3E-24 225.9 23.9 223 601-899 632-880 (888)
65 PF08022 FAD_binding_8: FAD-bi 99.8 1.6E-21 3.5E-26 181.1 -1.7 100 604-719 2-104 (105)
66 PRK12779 putative bifunctional 99.8 1.9E-18 4.1E-23 215.5 23.1 212 602-898 647-870 (944)
67 COG5126 FRQ1 Ca2+-binding prot 99.8 3.9E-19 8.4E-24 173.8 13.3 143 162-320 13-159 (160)
68 PRK12778 putative bifunctional 99.8 2.1E-18 4.6E-23 213.1 23.3 200 606-898 2-204 (752)
69 cd06193 siderophore_interactin 99.8 3.6E-18 7.8E-23 182.2 21.9 134 608-791 1-160 (235)
70 PTZ00306 NADH-dependent fumara 99.8 9.6E-18 2.1E-22 214.7 24.6 223 602-899 913-1153(1167)
71 PRK12775 putative trifunctiona 99.7 9.3E-17 2E-21 202.1 23.4 199 606-898 2-204 (1006)
72 KOG0034 Ca2+/calmodulin-depend 99.7 1.7E-17 3.7E-22 167.9 13.3 145 169-320 31-178 (187)
73 KOG0027 Calmodulin and related 99.7 1.2E-16 2.6E-21 158.6 13.5 136 169-317 6-149 (151)
74 PF08414 NADPH_Ox: Respiratory 99.7 3.7E-17 8E-22 143.9 8.4 100 141-245 1-100 (100)
75 KOG0044 Ca2+ sensor (EF-Hand s 99.6 1.2E-15 2.6E-20 154.5 11.4 146 169-320 27-178 (193)
76 PTZ00183 centrin; Provisional 99.6 1.1E-14 2.5E-19 144.8 13.9 138 169-319 15-156 (158)
77 cd06199 SiR Cytochrome p450- l 99.6 1.3E-14 2.9E-19 164.1 15.2 189 628-899 129-332 (360)
78 cd06206 bifunctional_CYPOR The 99.6 1.3E-14 2.7E-19 165.9 15.0 190 631-900 147-353 (384)
79 cd06207 CyPoR_like NADPH cytoc 99.6 2.7E-14 5.8E-19 163.1 17.1 179 646-899 161-354 (382)
80 PTZ00184 calmodulin; Provision 99.6 2.1E-14 4.6E-19 141.1 13.7 136 169-317 9-148 (149)
81 TIGR01931 cysJ sulfite reducta 99.5 4.5E-14 9.8E-19 169.2 14.8 184 629-899 367-569 (597)
82 KOG0028 Ca2+-binding protein ( 99.5 6E-14 1.3E-18 134.1 12.4 137 169-318 31-171 (172)
83 cd06203 methionine_synthase_re 99.5 1.8E-12 3.8E-17 148.8 18.7 136 646-819 171-316 (398)
84 PF01794 Ferric_reduct: Ferric 99.5 1.4E-13 3E-18 131.7 7.9 122 407-561 2-124 (125)
85 cd06204 CYPOR NADPH cytochrome 99.4 2.1E-12 4.6E-17 148.9 17.5 194 646-899 175-388 (416)
86 COG2871 NqrF Na+-transporting 99.4 1.9E-12 4.1E-17 134.1 13.4 215 619-900 150-399 (410)
87 PRK06214 sulfite reductase; Pr 99.4 6.1E-12 1.3E-16 147.4 19.0 125 645-818 312-451 (530)
88 KOG0031 Myosin regulatory ligh 99.4 5.8E-12 1.3E-16 119.6 14.0 132 169-317 30-165 (171)
89 cd06202 Nitric_oxide_synthase 99.4 6.9E-12 1.5E-16 144.2 17.1 183 647-899 175-374 (406)
90 PF00175 NAD_binding_1: Oxidor 99.3 6.2E-12 1.3E-16 117.2 10.8 107 731-892 1-109 (109)
91 PRK10953 cysJ sulfite reductas 99.3 2.5E-11 5.3E-16 145.2 16.4 137 630-818 371-521 (600)
92 KOG0038 Ca2+-binding kinase in 99.2 9.8E-11 2.1E-15 109.9 11.1 144 169-321 26-181 (189)
93 KOG0036 Predicted mitochondria 99.1 2.5E-10 5.5E-15 124.2 12.2 133 171-320 14-149 (463)
94 PF00970 FAD_binding_6: Oxidor 99.1 1.7E-10 3.7E-15 105.9 7.6 90 606-719 2-97 (99)
95 PF13499 EF-hand_7: EF-hand do 99.1 3.4E-10 7.3E-15 95.8 8.0 66 246-315 1-66 (66)
96 KOG0030 Myosin essential light 99.1 1.1E-09 2.3E-14 102.8 11.9 137 169-317 9-151 (152)
97 KOG0037 Ca2+-binding protein, 99.1 1.2E-09 2.6E-14 110.5 12.7 129 171-317 57-188 (221)
98 KOG4223 Reticulocalbin, calume 99.0 1.5E-09 3.3E-14 115.7 10.1 132 170-310 162-298 (325)
99 PRK06567 putative bifunctional 99.0 3.9E-09 8.4E-14 129.3 14.8 117 605-749 792-913 (1028)
100 KOG0027 Calmodulin and related 98.9 5.9E-09 1.3E-13 103.5 11.5 109 205-319 7-115 (151)
101 KOG3378 Globins and related he 98.9 2.3E-09 5E-14 110.8 7.8 127 602-751 148-287 (385)
102 COG5126 FRQ1 Ca2+-binding prot 98.8 3.3E-08 7.2E-13 97.4 11.9 139 112-272 14-155 (160)
103 PLN02964 phosphatidylserine de 98.8 1.7E-08 3.8E-13 119.7 10.3 100 169-273 141-243 (644)
104 cd05022 S-100A13 S-100A13: S-1 98.8 1.4E-08 3.1E-13 91.0 7.2 67 245-317 8-75 (89)
105 PTZ00183 centrin; Provisional 98.7 9.1E-08 2E-12 95.0 11.8 104 205-318 16-119 (158)
106 cd05026 S-100Z S-100Z: S-100Z 98.7 3.8E-08 8.1E-13 89.4 7.8 70 245-317 10-81 (93)
107 KOG0028 Ca2+-binding protein ( 98.7 1.2E-07 2.6E-12 91.4 10.9 103 206-318 33-135 (172)
108 cd05027 S-100B S-100B: S-100B 98.7 5.8E-08 1.3E-12 87.1 7.9 67 245-317 8-79 (88)
109 KOG4223 Reticulocalbin, calume 98.6 1.1E-07 2.3E-12 101.8 9.7 142 169-320 75-231 (325)
110 PTZ00184 calmodulin; Provision 98.6 3.9E-07 8.4E-12 89.3 12.9 103 206-318 11-113 (149)
111 KOG0377 Protein serine/threoni 98.6 1.8E-07 3.9E-12 102.4 10.9 135 172-317 465-615 (631)
112 KOG1158 NADP/FAD dependent oxi 98.6 3.8E-07 8.3E-12 108.0 12.7 127 726-900 491-618 (645)
113 cd05025 S-100A1 S-100A1: S-100 98.5 2.6E-07 5.6E-12 83.8 7.5 70 244-317 8-80 (92)
114 cd05031 S-100A10_like S-100A10 98.5 3.4E-07 7.5E-12 83.3 7.7 68 244-317 7-79 (94)
115 COG0369 CysJ Sulfite reductase 98.5 3.2E-06 6.8E-11 100.4 17.6 176 647-900 371-560 (587)
116 KOG0036 Predicted mitochondria 98.5 6.9E-07 1.5E-11 97.9 11.0 172 116-317 12-183 (463)
117 cd05023 S-100A11 S-100A11: S-1 98.5 4.9E-07 1.1E-11 81.3 8.0 70 245-317 9-80 (89)
118 cd00252 SPARC_EC SPARC_EC; ext 98.5 3.7E-07 8E-12 86.0 7.4 65 243-320 46-110 (116)
119 KOG2562 Protein phosphatase 2 98.4 7.7E-07 1.7E-11 99.0 9.4 133 174-313 281-420 (493)
120 smart00027 EH Eps15 homology d 98.4 9.1E-07 2E-11 80.9 7.9 64 244-317 9-72 (96)
121 cd00052 EH Eps15 homology doma 98.4 8.4E-07 1.8E-11 74.8 7.0 61 248-318 2-62 (67)
122 cd05029 S-100A6 S-100A6: S-100 98.4 1.1E-06 2.4E-11 78.9 7.8 65 246-317 11-79 (88)
123 PLN02964 phosphatidylserine de 98.3 3.1E-06 6.6E-11 100.9 12.7 99 206-319 143-245 (644)
124 KOG0044 Ca2+ sensor (EF-Hand s 98.3 3.5E-06 7.5E-11 86.1 10.9 104 204-317 24-128 (193)
125 KOG4666 Predicted phosphate ac 98.3 1.6E-06 3.4E-11 92.1 8.1 140 169-322 221-364 (412)
126 cd00213 S-100 S-100: S-100 dom 98.3 1.9E-06 4E-11 77.4 7.5 71 244-317 7-79 (88)
127 KOG0037 Ca2+-binding protein, 98.3 3.4E-06 7.3E-11 85.9 9.7 125 170-316 93-219 (221)
128 PF13499 EF-hand_7: EF-hand do 98.3 1.8E-06 3.8E-11 72.9 5.9 61 208-271 2-66 (66)
129 cd00051 EFh EF-hand, calcium b 98.2 4.1E-06 8.8E-11 68.3 6.7 61 247-315 2-62 (63)
130 PF13833 EF-hand_8: EF-hand do 98.1 7.4E-06 1.6E-10 66.3 6.2 53 258-317 1-53 (54)
131 PRK05419 putative sulfite oxid 98.1 6.3E-05 1.4E-09 78.3 14.0 127 439-599 68-194 (205)
132 KOG2643 Ca2+ binding protein, 98.0 2.1E-05 4.6E-10 87.1 10.5 131 173-316 235-383 (489)
133 PF13833 EF-hand_8: EF-hand do 98.0 1.6E-05 3.5E-10 64.3 6.1 50 223-272 2-52 (54)
134 KOG0034 Ca2+/calmodulin-depend 97.9 2.7E-05 5.8E-10 79.5 8.6 96 173-272 68-174 (187)
135 cd05030 calgranulins Calgranul 97.9 4.2E-05 9.2E-10 68.7 7.8 70 245-317 8-79 (88)
136 PF00036 EF-hand_1: EF hand; 97.9 1.4E-05 3E-10 56.0 3.6 27 246-272 1-27 (29)
137 PF14658 EF-hand_9: EF-hand do 97.8 4.6E-05 9.9E-10 63.7 6.4 62 249-317 2-64 (66)
138 cd05026 S-100Z S-100Z: S-100Z 97.8 8.2E-05 1.8E-09 67.6 8.1 64 208-273 12-81 (93)
139 cd05027 S-100B S-100B: S-100B 97.8 9.1E-05 2E-09 66.5 7.9 63 208-272 10-78 (88)
140 PF00036 EF-hand_1: EF hand; 97.7 3.4E-05 7.5E-10 54.0 3.1 27 291-317 2-28 (29)
141 PRK12309 transaldolase/EF-hand 97.7 0.00013 2.7E-09 83.1 9.4 69 228-317 315-385 (391)
142 KOG0751 Mitochondrial aspartat 97.7 0.00023 4.9E-09 79.7 10.9 145 171-319 33-209 (694)
143 smart00027 EH Eps15 homology d 97.7 6E-05 1.3E-09 68.9 5.4 47 224-272 25-71 (96)
144 cd05022 S-100A13 S-100A13: S-1 97.7 0.00015 3.1E-09 65.3 7.4 65 207-273 9-75 (89)
145 cd05025 S-100A1 S-100A1: S-100 97.6 0.00018 3.9E-09 65.2 8.0 65 206-272 9-79 (92)
146 COG2717 Predicted membrane pro 97.6 0.00053 1.1E-08 70.5 11.8 124 442-599 71-194 (209)
147 cd00051 EFh EF-hand, calcium b 97.6 0.00022 4.7E-09 57.9 7.4 61 208-271 2-62 (63)
148 cd05031 S-100A10_like S-100A10 97.6 0.00027 5.8E-09 64.3 8.0 64 207-272 9-78 (94)
149 KOG0041 Predicted Ca2+-binding 97.5 0.00022 4.9E-09 71.4 7.2 66 246-319 100-165 (244)
150 KOG0030 Myosin essential light 97.5 0.00089 1.9E-08 63.6 10.7 108 203-318 8-117 (152)
151 PF13405 EF-hand_6: EF-hand do 97.5 0.00013 2.7E-09 52.0 3.4 27 246-272 1-27 (31)
152 KOG1159 NADP-dependent flavopr 97.4 0.00089 1.9E-08 75.6 11.6 115 636-800 358-483 (574)
153 cd05023 S-100A11 S-100A11: S-1 97.4 0.00056 1.2E-08 61.6 8.1 64 208-272 11-79 (89)
154 PF13202 EF-hand_5: EF hand; P 97.4 0.00016 3.4E-09 48.9 3.2 25 247-271 1-25 (25)
155 cd00052 EH Eps15 homology doma 97.4 0.00048 1E-08 57.8 7.1 59 209-272 2-60 (67)
156 cd05029 S-100A6 S-100A6: S-100 97.4 0.00069 1.5E-08 60.9 8.1 64 208-272 12-78 (88)
157 KOG2643 Ca2+ binding protein, 97.4 0.00073 1.6E-08 75.2 9.6 129 173-317 320-453 (489)
158 cd05024 S-100A10 S-100A10: A s 97.4 0.00044 9.5E-09 61.9 6.5 68 246-317 9-76 (91)
159 cd00252 SPARC_EC SPARC_EC; ext 97.3 0.00063 1.4E-08 64.3 7.6 44 224-271 63-106 (116)
160 KOG0031 Myosin regulatory ligh 97.3 0.0022 4.8E-08 62.0 10.7 98 207-318 33-130 (171)
161 cd00213 S-100 S-100: S-100 dom 97.2 0.0015 3.2E-08 58.5 7.8 65 206-272 8-78 (88)
162 KOG4251 Calcium binding protei 97.2 0.00036 7.7E-09 71.7 4.1 134 171-315 101-262 (362)
163 KOG0040 Ca2+-binding actin-bun 97.1 0.0029 6.3E-08 78.7 11.4 137 164-316 2246-2397(2399)
164 cd05030 calgranulins Calgranul 97.0 0.0022 4.7E-08 57.7 7.4 64 208-272 10-78 (88)
165 PF13202 EF-hand_5: EF hand; P 96.8 0.0011 2.3E-08 44.8 2.8 23 293-315 3-25 (25)
166 KOG4251 Calcium binding protei 96.7 0.0061 1.3E-07 62.9 8.7 139 173-316 142-308 (362)
167 KOG4065 Uncharacterized conser 96.6 0.0066 1.4E-07 55.7 7.0 71 243-314 65-142 (144)
168 PF12763 EF-hand_4: Cytoskelet 96.5 0.0088 1.9E-07 55.4 7.5 91 243-346 8-98 (104)
169 PF12763 EF-hand_4: Cytoskelet 96.4 0.0049 1.1E-07 57.1 4.9 64 169-237 8-71 (104)
170 PF14788 EF-hand_10: EF hand; 96.3 0.011 2.5E-07 46.7 5.6 48 225-272 1-48 (51)
171 PF10591 SPARC_Ca_bdg: Secrete 96.3 0.0024 5.1E-08 60.2 2.2 73 231-313 40-112 (113)
172 cd05024 S-100A10 S-100A10: A s 96.1 0.013 2.7E-07 52.7 6.1 61 170-236 7-75 (91)
173 PRK12309 transaldolase/EF-hand 96.1 0.01 2.3E-07 67.7 6.9 53 204-272 332-384 (391)
174 COG2375 ViuB Siderophore-inter 96.0 1 2.2E-05 48.5 20.9 122 602-748 16-165 (265)
175 KOG0039 Ferric reductase, NADH 96.0 0.053 1.2E-06 66.3 12.7 79 186-272 2-88 (646)
176 KOG0046 Ca2+-binding actin-bun 95.9 0.017 3.6E-07 66.0 7.3 68 246-319 20-87 (627)
177 PF13405 EF-hand_6: EF-hand do 95.9 0.0079 1.7E-07 42.7 3.0 27 291-317 2-28 (31)
178 PF14788 EF-hand_10: EF hand; 95.8 0.021 4.6E-07 45.2 5.3 48 261-316 1-48 (51)
179 KOG0038 Ca2+-binding kinase in 95.7 0.018 3.9E-07 55.1 5.3 85 184-272 83-176 (189)
180 KOG0041 Predicted Ca2+-binding 95.7 0.034 7.4E-07 56.2 7.4 96 169-269 97-199 (244)
181 PF14658 EF-hand_9: EF-hand do 95.6 0.036 7.8E-07 46.6 6.1 59 211-272 3-63 (66)
182 KOG0377 Protein serine/threoni 95.2 0.049 1.1E-06 60.9 7.3 64 208-274 549-616 (631)
183 KOG0751 Mitochondrial aspartat 95.0 0.076 1.6E-06 60.2 8.2 95 175-272 77-206 (694)
184 KOG0169 Phosphoinositide-speci 94.5 0.27 5.9E-06 59.1 11.7 161 145-320 107-277 (746)
185 smart00054 EFh EF-hand, calciu 94.4 0.042 9.2E-07 36.7 2.9 26 247-272 2-27 (29)
186 smart00054 EFh EF-hand, calciu 93.9 0.07 1.5E-06 35.6 3.2 26 292-317 3-28 (29)
187 PF10591 SPARC_Ca_bdg: Secrete 93.4 0.29 6.3E-06 46.1 7.6 59 169-233 52-112 (113)
188 KOG0040 Ca2+-binding actin-bun 93.2 0.29 6.4E-06 62.0 8.9 83 224-313 2268-2357(2399)
189 KOG3866 DNA-binding protein of 92.9 0.2 4.3E-06 53.8 6.1 91 227-317 225-324 (442)
190 KOG1029 Endocytic adaptor prot 92.7 0.48 1E-05 56.6 9.4 128 170-315 15-255 (1118)
191 PF08021 FAD_binding_9: Sidero 91.7 1.2 2.6E-05 42.3 9.3 89 607-719 1-117 (117)
192 KOG2562 Protein phosphatase 2 91.3 0.71 1.5E-05 52.6 8.4 135 174-314 142-303 (493)
193 KOG4065 Uncharacterized conser 90.4 0.33 7.1E-06 44.9 3.9 59 175-234 71-142 (144)
194 PF09279 EF-hand_like: Phospho 89.9 0.59 1.3E-05 41.2 5.1 67 246-319 1-71 (83)
195 KOG0046 Ca2+-binding actin-bun 88.2 0.7 1.5E-05 53.3 5.4 71 161-238 11-86 (627)
196 KOG4578 Uncharacterized conser 88.2 0.4 8.6E-06 52.0 3.2 69 246-321 334-402 (421)
197 KOG1707 Predicted Ras related/ 85.7 5.7 0.00012 47.1 10.9 147 170-320 194-346 (625)
198 KOG0035 Ca2+-binding actin-bun 85.0 1.9 4E-05 53.6 7.0 99 169-269 745-848 (890)
199 PLN02952 phosphoinositide phos 85.0 4.8 0.0001 48.6 10.3 92 224-318 15-111 (599)
200 KOG4347 GTPase-activating prot 84.9 1.9 4.1E-05 51.3 6.7 108 156-267 489-612 (671)
201 KOG0998 Synaptic vesicle prote 84.8 0.57 1.2E-05 59.0 2.7 136 169-319 127-347 (847)
202 KOG4666 Predicted phosphate ac 83.3 1.2 2.6E-05 48.5 3.9 85 223-318 241-325 (412)
203 KOG3555 Ca2+-binding proteogly 82.7 1.2 2.6E-05 48.9 3.5 62 244-317 249-310 (434)
204 KOG3555 Ca2+-binding proteogly 81.6 2.2 4.8E-05 46.9 5.1 94 171-272 211-309 (434)
205 PF09279 EF-hand_like: Phospho 79.9 3.2 6.9E-05 36.5 4.9 61 208-272 2-68 (83)
206 PF09069 EF-hand_3: EF-hand; 79.8 9.7 0.00021 34.3 7.8 72 244-320 2-78 (90)
207 PF08726 EFhand_Ca_insen: Ca2+ 74.7 1.7 3.7E-05 37.1 1.5 60 241-313 2-65 (69)
208 KOG4578 Uncharacterized conser 70.4 2.9 6.2E-05 45.7 2.3 62 209-273 336-398 (421)
209 PF09068 EF-hand_2: EF hand; 68.2 83 0.0018 30.3 11.6 99 155-272 25-124 (127)
210 KOG4403 Cell surface glycoprot 67.7 32 0.0007 39.1 9.6 60 208-274 70-130 (575)
211 KOG0169 Phosphoinositide-speci 67.1 21 0.00046 43.6 8.8 96 208-318 138-233 (746)
212 KOG0035 Ca2+-binding actin-bun 64.0 13 0.00027 46.6 6.2 74 244-320 746-819 (890)
213 KOG0042 Glycerol-3-phosphate d 63.3 8.3 0.00018 45.4 4.3 66 246-319 594-659 (680)
214 KOG1029 Endocytic adaptor prot 59.0 7 0.00015 47.2 2.8 63 171-237 195-257 (1118)
215 PF08726 EFhand_Ca_insen: Ca2+ 54.0 5.6 0.00012 34.0 0.7 60 171-234 6-66 (69)
216 PF05517 p25-alpha: p25-alpha 50.0 1.1E+02 0.0024 30.4 9.4 49 224-272 17-68 (154)
217 PF14145 YrhK: YrhK-like prote 49.9 50 0.0011 27.4 5.6 53 547-600 4-56 (59)
218 KOG2243 Ca2+ release channel ( 49.0 24 0.00052 45.1 5.0 59 250-317 4062-4120(5019)
219 KOG1955 Ral-GTPase effector RA 48.6 23 0.0005 40.9 4.6 62 245-316 231-292 (737)
220 PF09068 EF-hand_2: EF hand; 47.5 1.9E+02 0.0041 27.9 10.1 103 209-316 3-124 (127)
221 PF05042 Caleosin: Caleosin re 47.0 43 0.00092 33.9 5.7 30 289-318 96-125 (174)
222 PLN02292 ferric-chelate reduct 45.0 52 0.0011 40.9 7.3 54 852-912 646-700 (702)
223 PLN02631 ferric-chelate reduct 43.7 45 0.00098 41.4 6.5 54 853-912 643-697 (699)
224 PF00033 Cytochrom_B_N: Cytoch 43.5 85 0.0018 31.5 7.7 28 442-469 44-71 (188)
225 PF01794 Ferric_reduct: Ferric 43.2 51 0.0011 30.7 5.6 52 509-569 2-56 (125)
226 KOG4347 GTPase-activating prot 40.4 41 0.00089 40.5 5.2 60 243-311 553-612 (671)
227 PF05042 Caleosin: Caleosin re 40.2 91 0.002 31.6 6.8 68 244-314 95-163 (174)
228 PF13301 DUF4079: Protein of u 36.4 1.7E+02 0.0037 29.9 8.3 87 444-566 79-166 (175)
229 KOG1265 Phospholipase C [Lipid 36.4 1.7E+02 0.0036 36.8 9.4 127 184-317 160-299 (1189)
230 MTH00191 CYTB cytochrome b; Pr 36.2 4.2E+02 0.0091 30.4 12.4 30 501-530 278-307 (365)
231 KOG1955 Ral-GTPase effector RA 32.9 38 0.00082 39.3 3.2 30 243-272 263-292 (737)
232 MTH00074 CYTB cytochrome b; Pr 32.7 7.6E+02 0.017 28.5 13.8 20 443-462 178-197 (380)
233 PF01292 Ni_hydr_CYTB: Prokary 31.8 1.3E+02 0.0028 30.1 6.9 22 445-466 43-64 (182)
234 KOG1264 Phospholipase C [Lipid 31.2 2.2E+02 0.0047 35.6 9.1 162 148-319 118-295 (1267)
235 COG4025 Predicted membrane pro 30.5 2E+02 0.0044 30.5 7.7 33 606-638 214-246 (284)
236 PF09874 DUF2101: Predicted me 30.3 2.5E+02 0.0053 29.3 8.2 40 599-638 136-176 (206)
237 PRK10639 formate dehydrogenase 29.3 2.4E+02 0.0053 29.5 8.5 24 544-567 146-170 (211)
238 PF05297 Herpes_LMP1: Herpesvi 28.6 19 0.00041 38.9 0.0 14 579-592 171-184 (381)
239 KOG2871 Uncharacterized conser 27.2 50 0.0011 37.1 2.9 65 243-314 307-371 (449)
240 MTH00016 CYTB cytochrome b; Va 27.0 7.6E+02 0.016 28.5 12.5 29 501-530 282-311 (378)
241 PF14358 DUF4405: Domain of un 26.8 64 0.0014 26.8 2.9 24 443-466 40-63 (64)
242 MTH00156 CYTB cytochrome b; Pr 26.7 1E+03 0.022 27.3 14.6 40 424-464 149-188 (356)
243 PRK11281 hypothetical protein; 26.1 6E+02 0.013 33.7 12.6 28 438-465 610-637 (1113)
244 TIGR01848 PHA_reg_PhaR polyhyd 25.9 1.4E+02 0.0031 27.8 5.0 67 252-319 10-79 (107)
245 KOG0042 Glycerol-3-phosphate d 25.9 33 0.00072 40.6 1.3 49 224-272 608-656 (680)
246 PF05517 p25-alpha: p25-alpha 25.9 2.2E+02 0.0047 28.3 7.0 64 248-317 2-69 (154)
247 COG4097 Predicted ferric reduc 25.9 1.5E+02 0.0033 33.7 6.3 66 497-570 33-99 (438)
248 KOG2243 Ca2+ release channel ( 25.2 66 0.0014 41.5 3.6 54 177-234 4063-4117(5019)
249 PF05562 WCOR413: Cold acclima 25.0 2.1E+02 0.0046 29.2 6.6 38 410-461 72-109 (187)
250 PLN02952 phosphoinositide phos 24.8 2E+02 0.0043 35.2 7.5 84 185-272 13-109 (599)
251 MTH00131 CYTB cytochrome b; Pr 24.1 8.6E+02 0.019 28.0 12.3 21 509-530 290-310 (380)
252 MTH00053 CYTB cytochrome b; Pr 23.5 9.1E+02 0.02 27.9 12.3 22 442-463 177-198 (381)
253 KOG4004 Matricellular protein 23.4 27 0.00059 35.8 0.0 54 215-272 196-249 (259)
254 MTH00086 CYTB cytochrome b; Pr 23.0 1.2E+03 0.025 26.7 13.9 27 502-529 270-297 (355)
255 PLN02844 oxidoreductase/ferric 22.6 1.1E+02 0.0023 38.5 4.8 55 504-567 155-212 (722)
256 PLN02222 phosphoinositide phos 22.4 2.5E+02 0.0054 34.2 7.7 66 245-318 25-91 (581)
257 PF13706 PepSY_TM_3: PepSY-ass 22.3 86 0.0019 23.3 2.5 18 445-462 5-22 (37)
258 PLN00151 potassium transporter 22.1 1.7E+03 0.037 28.4 15.0 20 368-387 303-322 (852)
259 MTH00100 CYTB cytochrome b; Pr 21.8 5.3E+02 0.011 29.7 10.0 21 509-530 290-310 (379)
260 KOG3866 DNA-binding protein of 21.7 73 0.0016 34.9 2.8 90 176-272 249-353 (442)
261 KOG1419 Voltage-gated K+ chann 21.7 1.5E+02 0.0033 35.3 5.4 97 527-624 74-187 (654)
262 PRK13553 fumarate reductase cy 21.5 4E+02 0.0087 28.9 8.3 109 446-569 26-146 (258)
263 PF09842 DUF2069: Predicted me 20.9 6.9E+02 0.015 23.3 11.0 52 446-530 54-105 (109)
264 MTH00033 CYTB cytochrome b; Pr 20.7 5.5E+02 0.012 29.7 9.8 21 509-530 289-309 (383)
No 1
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2e-98 Score=892.92 Aligned_cols=642 Identities=56% Similarity=0.964 Sum_probs=569.5
Q ss_pred CcccHHHHHHHHHHhcCCChHHHHHHHHhHhCCCCCCcccHHHHHHHHHhhhccCcccchHHHHHHHHHHHhhhcCCCCC
Q 002525 224 DSINKAQLKEFWDQISDESFDSRLQTFFDMVDTDADGRITEEEVKEIISLSASANKLSNIQKQAEEYAAMIMEELDPDNA 303 (912)
Q Consensus 224 G~Id~~EF~~~~~~~~~~~~ee~L~~aF~~fDkd~dG~It~eEl~~il~~~~~~~~l~~~~~~~ee~~~~i~~e~D~d~d 303 (912)
| |+++||. +.+.+.|++++.+|+++|+ ++|.++.+|+.+++..+...+.+..++++.+++...+|++.|.++.
T Consensus 3 ~-~~~~~~~-----~~~~~~d~~l~~~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (646)
T KOG0039|consen 3 G-ISFQELK-----ITDCSYDDKLQTFFDMYDK-GDGKLTEEEVRELIMSSISANWLSLIKKQTEEYAALIMEELDPDHK 75 (646)
T ss_pred C-cchhhhc-----ccCCChhHHHHHHHHHHhh-hcCCccHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhhhcccccc
Confidence 7 9999998 6778999999999999999 9999999999999987666666777788899999999999999999
Q ss_pred CcccHHHHHHHHHhCCCCCcccCccc-chhhhhhhccCCCCCCCccchhhHhhhhhhcccchhhhHHHHHHHHHHHHHHH
Q 002525 304 GYIMIHNLETLLLQAPNQSVRVGDSR-ILSQMLSQKLKPTQENNPLRKCYQKIKYFLMDNWQRVWIMLLWLGIVGGLFAY 382 (912)
Q Consensus 304 G~Is~~EF~~~l~~~p~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~~~i~l~~~~n~~lf~~ 382 (912)
|++.++++..++.+.|++........ +++.+..+.+++.. ..+..+++.+...+++++|.+++.+++|++++++||.|
T Consensus 76 ~y~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lf~~ 154 (646)
T KOG0039|consen 76 GYITNEDLEILLLQIPTLLFAILLSFANLSLLLSQPLKPTR-RKPLLRNLVRMGAFLPNLWLRVWVLFLWLGLNVGLFTW 154 (646)
T ss_pred ceeeecchhHHHHhchHHHHHHHHHHHHHHhhhcccccccc-ccccchheeeeeeeeccceEeeeeehHHHHHHHHHHHH
Confidence 99999999999999997632111111 34556666666654 45566777788888999999999999999999999999
Q ss_pred HHHhcccchhhhhccceeeeeccchhhhhhHHHHHHHHHhhhHHHhhcccccccccccCccchhHHHHHHHHHHHHHHHh
Q 002525 383 KFVQYRNKAAYDVMGYCVCIAKGGAETLKFNMALILLPVCRNTITWLRNKTKLGLVVPFDDNLNFHKVIAVGIGIGVILH 462 (912)
Q Consensus 383 ~~~~y~~~~~~~~~g~~~~~ar~~a~~l~~n~~lill~~~Rn~i~~Lr~~t~l~~~v~~d~~~~fHr~ia~~~~v~~~lH 462 (912)
++.+|.....+++||+++++++++|.++++|++++++++|||.++||+..+.+..++|+|+++.||+.+|..+..++.+|
T Consensus 155 ~~~~y~~~~~~~~~g~~~~~~~~~~~~l~~~~~~ill~~~R~~~~~L~~~~fl~~~~p~~~n~~fh~l~g~~~~~~~~~H 234 (646)
T KOG0039|consen 155 RFLQYVYLGTRHILGLCLALARGSAETLNFNMALILLPVCRNRLTFLRCSTFLFSYLPFDRNLNFHKLVALTIAVFILLH 234 (646)
T ss_pred HHHHHHhhhhhhhhhheeeeeccccccchhhHHHHHHHHHHHHHHHHHHhhhhheEeeccccchHHHHHHHHHHHHHHHH
Confidence 99999887788999999999999999999999999999999999999966888889999999999999999999999999
Q ss_pred hhhhhhccccccccccccccc-cccCccCCCCCCccceeccccchhHHHHHHHHHHHHHHhhhhhhhhccCCCCCccccc
Q 002525 463 GGAHLTCDFPRLLHATEEEYE-PMKPYFGDEQPDNYWWFVKGVEGVTGIIMVVLMVIAFTLATPWFRRNKLNLPKPLKRL 541 (912)
Q Consensus 463 ~i~~~~~~f~~~~~~~~~~~~-~~~~~~~~~~~~~y~~~~~~~~g~tGii~~vl~~i~~~~s~~~~Rr~~~~~~~~l~~~ 541 (912)
.++|.+|.|+.++|.....+. .....++ ++.|++++.+..+++|++|+++|++|+++|+++|||+
T Consensus 235 ~w~~~~~~~~~~ih~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~tGv~~~i~~~im~v~s~~~fRR~----------- 300 (646)
T KOG0039|consen 235 IWLHLVNFFPFLVHGLEYTISLASELFFL---PKTYKWLLLGVVGLTGVILLILMLIMFVLSLPFFRRR----------- 300 (646)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHhccc---chhhhhhhcCCCcchhHHHHHHHHHHHHHhhHHHHHH-----------
Confidence 999999988888776543221 1222232 4567888999999999999999999999999999999
Q ss_pred cccchhhhHHHHHHHHHHHHHHHhhhhhhcccccccchhhhhhHhhHHHHHHHHHHHHHhcccceEEEEEEEecCCEEEE
Q 002525 542 TGFNAFWYSHHLFIIVYTLLIVHGIKLYLTKKWYQKTTWMYLAVPMVLYACERLTRALRSSIEPVKILKVAVYPGNVLAL 621 (912)
Q Consensus 542 ~~ye~F~~~H~l~~i~~vll~~H~~~~~~~~~w~~~~~w~yl~~~~~l~~~dr~~R~~r~~~~~~~i~~v~~~~~~v~~l 621 (912)
.||+|||+||+++++|+++++||...++. .+|+|+++|+++|++||++|+.|+ .++++++++..+|+||++|
T Consensus 301 -~~e~F~ytH~l~~v~~illi~hg~~~~~~------~~w~~~~~p~~ly~~dR~~r~~r~-~~~~~i~~~~llp~~vi~L 372 (646)
T KOG0039|consen 301 -FYEAFWYTHHLYIVFYILLIIHGGFRLLG------TTWMYIAVPVLLYILDRILRFLRS-QKNVKIAKVVLLPSDVLEL 372 (646)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHhcccccc------cchhHHHHHHHHHHHHHHHHHHHH-hcCceEEEEEEcCCCeEEE
Confidence 79999999999999999999999865442 789999999999999999999999 5789999999999999999
Q ss_pred EEecCCCccccCccEEEEEeCCCCCCcccceeeeecCCCCeEEEEEEecCcchHHHHHHHhhccCCCCCCCCccchhhhc
Q 002525 622 HMSKPQGFKYKSGQYMFVNCAAVSPFEWHPFSITSSPGDDYLSVHIRTLGDWTRQLKTVFSEVCQPAPAGKSGLLRAERE 701 (912)
Q Consensus 622 ~~~~p~~~~~~pGQyv~l~~p~~s~~e~HPFTIaS~p~~~~l~l~Ir~~G~~T~~L~~~~~~~~~~~~~g~sg~~~~~~~ 701 (912)
++++|++|+|+|||||||+||.++.||||||||+|+|+|+++++|||+.||||++|++.+++.|+++..+..
T Consensus 373 ~~~Kp~~f~y~~Gqyifv~~p~ls~~qwHPFTItSsp~dd~lsvhIk~~g~wT~~L~~~~~~~~~~~~~~~~-------- 444 (646)
T KOG0039|consen 373 IMSKPPGFKYKPGQYIFVNCPSLSKLEWHPFTITSAPEDDFLSVHIKALGDWTEKLRNAFSEVSQPPESDKS-------- 444 (646)
T ss_pred EEeCCCCCCCCCCCEEEEECccccccccCCceeecCCCCCEEEEEEEecCcHHHHHHHHHhhhccccccccc--------
Confidence 999999999999999999999999999999999999999999999999999999999999765555433211
Q ss_pred cCCCCCCeEEEeCCCCCCCCCCCCCCEEEEEEcCcchhhHHHHHHHHHHhccccCccccccccccCCCCCCCCCcceEEE
Q 002525 702 NNSRGFPKILIDGPYGAPAQDYKKYDVVLLVGLGIGATPMISIVKDIINNMKSEDNNLESGLTVNNNNKNSSFNTRKAYF 781 (912)
Q Consensus 702 ~~~~~~~~v~IdGPYG~~~~~~~~y~~vllVagGiGITP~lsiL~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~l 781 (912)
...+++.||||||++++|+.+|++++|||||||+||++|++++++++.+.+...++ .+.......+++++|
T Consensus 445 ---~~~~~i~IdGPYG~~s~d~~~~e~~vLV~~GiGvtPf~sil~~l~~~~~~~~~~~~------~~~~~~~~~~~~~~F 515 (646)
T KOG0039|consen 445 ---YPFPKILIDGPYGAPSQDVFKYEVLVLVGGGIGVTPFASILKDLLNKISLGRTKAP------TSDYSDSLKLKKVYF 515 (646)
T ss_pred ---ccCceEEEECCCCCCchhhhhcceEEEEccCcccCccHHHHHHHHhhccCCCCcCc------cccccccceecceeE
Confidence 24789999999999999999999999999999999999999999998766431100 011123346789999
Q ss_pred EEEeCCCCcHHHHHHHHHHHHhhcCCCcEEEEEeeccccCCCChhHHHHHHHhhhccccCCcccccCCccccccCCCCHH
Q 002525 782 YWVTREQGSFEWFKGIMNEVAEMDEKRVIELHNYCTSVYEEGDARSALIAMLQSLHHAKNGVDVVSGTRVKSHFAKPNWR 861 (912)
Q Consensus 782 ~W~~R~~~~~~wf~~~L~el~~~~~~~~i~i~iy~T~~~~~~d~~s~l~~~~q~l~~~~~~~d~~sg~~v~~~~gRPd~~ 861 (912)
+|++|++.+++||.+++.++.+.+..+.+++|+|+|+.+++.|.+++++.+.|.+.|++++.|+++|+++++|+|||||+
T Consensus 516 ~Wv~~~~~sf~wf~~~l~~v~~~~~~~~~e~~~~~t~~~~~~d~~~~~~~~~~~~~~~~~~~di~~g~~~~~~~gRPn~~ 595 (646)
T KOG0039|consen 516 YWVTREQRSFEWFKGLLTEVEEYDSSGVIELHNYVTSSYEEGDARSALIQMVQKLLHAKNGVDIVTGLKVETHFGRPNWK 595 (646)
T ss_pred EEEeccccchHHHHHHHHHHHHHHhcCCchhheehhHhHhhhhhhhHHHHHHHhhcccccCccccccceeeeeCCCCCHH
Confidence 99999999999999999999998877789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCCeEEEEEeCChHHHHHHHHHHHhhccCCCceEEEEeecC
Q 002525 862 QVYKRIALHHPDSRIGVFYCGAPALTKELRQLASDFSHKTSTKFEFHKENF 912 (912)
Q Consensus 862 ~vl~~~~~~~~~~~v~V~~CGP~~m~~~vr~~~~~~~~~~~~~~~fh~E~F 912 (912)
+++++++..+++.+++||+||||+|++++|+.|.+.+.++.+.|+||+|+|
T Consensus 596 ~~~~~~~~~~~~~~vgVf~CGp~~l~~~~~~~~~~~~~~~~~~~~f~~E~F 646 (646)
T KOG0039|consen 596 EVFKEIAKSHPNVRVGVFSCGPPGLVKELRKLCNDFSSSTATRFEFHKENF 646 (646)
T ss_pred HHHHHHHhhCCCceEEEEEeCCHHHHHHHHHHHHhcccccCceeeeeeccC
Confidence 999999999988779999999999999999999999988888999999998
No 2
>PLN02631 ferric-chelate reductase
Probab=100.00 E-value=1.7e-57 Score=537.27 Aligned_cols=335 Identities=24% Similarity=0.427 Sum_probs=269.8
Q ss_pred eeeccchhhhhhHHHHHHHHHhhhH-HHhhcccccccccccCccchhHHHHHHHHHHHHHHHhhhhhhhccccccccccc
Q 002525 401 CIAKGGAETLKFNMALILLPVCRNT-ITWLRNKTKLGLVVPFDDNLNFHKVIAVGIGIGVILHGGAHLTCDFPRLLHATE 479 (912)
Q Consensus 401 ~~ar~~a~~l~~n~~lill~~~Rn~-i~~Lr~~t~l~~~v~~d~~~~fHr~ia~~~~v~~~lH~i~~~~~~f~~~~~~~~ 479 (912)
.+|.++|.+...||++++||++||+ +.|++| ++|++++.||||+|+++++++++|++.+++. +.. .
T Consensus 151 ~ig~RtGila~~~lpll~L~a~Rnn~L~~ltG-------~s~e~~i~yHRWlGri~~~la~iH~i~y~i~-~~~-----~ 217 (699)
T PLN02631 151 AFGLRIGYVGHICWAFLFFPVTRASTILPLVG-------LTSESSIKYHIWLGHVSNFLFLVHTVVFLIY-WAM-----I 217 (699)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCHHHHHHC-------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHh-----h
Confidence 3688899999999999999999985 899998 9999999999999999999999999999865 211 0
Q ss_pred cccccccCccCCCCCCccceeccccchhHHHHHHHHHHHHHHhhhhhhhhccCCCCCccccccccchhhhHHHHHHHHHH
Q 002525 480 EEYEPMKPYFGDEQPDNYWWFVKGVEGVTGIIMVVLMVIAFTLATPWFRRNKLNLPKPLKRLTGFNAFWYSHHLFIIVYT 559 (912)
Q Consensus 480 ~~~~~~~~~~~~~~~~~y~~~~~~~~g~tGii~~vl~~i~~~~s~~~~Rr~~~~~~~~l~~~~~ye~F~~~H~l~~i~~v 559 (912)
+.+. ..+.. ...| ..+++|+++++++++|+++|+++|||+ +||+|+++|++++++++
T Consensus 218 ~~~~---~~~~w--~~~~------~~~~~GviA~v~~~lm~~~Sl~~~RRr------------~YE~F~~~Hillaifiv 274 (699)
T PLN02631 218 NKLM---ETFAW--NPTY------VPNLAGTIAMVIGIAMWVTSLPSFRRK------------KFELFFYTHHLYGLYIV 274 (699)
T ss_pred chhh---hhhhc--cccc------chHHHHHHHHHHHHHHHHhccHHHHhh------------hhhHHHHHHHHHHHHHH
Confidence 1110 00100 0112 235789999999999999999999998 79999999999998666
Q ss_pred HHHHHhhhhhhcccccccchhhh-hhHhhHHHHHHHHHHHHHhcccceEEEEEEEecCCEEEEEEecCCCccccCccEEE
Q 002525 560 LLIVHGIKLYLTKKWYQKTTWMY-LAVPMVLYACERLTRALRSSIEPVKILKVAVYPGNVLALHMSKPQGFKYKSGQYMF 638 (912)
Q Consensus 560 ll~~H~~~~~~~~~w~~~~~w~y-l~~~~~l~~~dr~~R~~r~~~~~~~i~~v~~~~~~v~~l~~~~p~~~~~~pGQyv~ 638 (912)
++++|.. ..|.| +++++++|++||++|.+|... ..++++++.++++++++++++|++++|+||||++
T Consensus 275 ~~~~H~g-----------~~w~~~~~~~ialw~~DR~lR~~r~~~-~~~lv~~~~l~~d~l~l~~~~~~~~~~~PGQfvf 342 (699)
T PLN02631 275 FYVIHVG-----------DSWFCMILPNIFLFFIDRYLRFLQSTK-RSRLVSARILPSDNLELTFSKTPGLHYTPTSILF 342 (699)
T ss_pred heEEecC-----------CchHHHHHHHHHHHHHHHHHHHHHHhc-eEEEEEEEEeCCCeEEEEEEcCCCCcCCCCceEE
Confidence 6677742 12443 345688999999999998864 4788889999999999999998889999999999
Q ss_pred EEeCCCCCCcccceeeeecCC--CCeEEEEEEecCcchHHHHHHHhhccCCCCCCCCccchhhhccCCCCCCeEEEeCCC
Q 002525 639 VNCAAVSPFEWHPFSITSSPG--DDYLSVHIRTLGDWTRQLKTVFSEVCQPAPAGKSGLLRAERENNSRGFPKILIDGPY 716 (912)
Q Consensus 639 l~~p~~s~~e~HPFTIaS~p~--~~~l~l~Ir~~G~~T~~L~~~~~~~~~~~~~g~sg~~~~~~~~~~~~~~~v~IdGPY 716 (912)
|++|..+.+|||||||+|.|+ ++.++++||..|+||++|.+.+++ .....++.+||||
T Consensus 343 L~~p~~s~~q~HPFSIaSsp~~~~~~L~~~IK~~Gg~T~~L~~~l~~--------------------~g~~i~V~VeGPY 402 (699)
T PLN02631 343 LHVPSISKLQWHPFTITSSSNLEKDTLSVVIRRQGSWTQKLYTHLSS--------------------SIDSLEVSTEGPY 402 (699)
T ss_pred EEeccCCccceEEEEEeccCCCCCCEEEEEEEcCChHHHHHHHhhhc--------------------CCCeeEEEEECCC
Confidence 999999999999999999984 578999999999999999886631 0124689999999
Q ss_pred CCCCCCCCCCCEEEEEEcCcchhhHHHHHHHHHHhccccCccccccccccCCCCCCCCCcceEEEEEEeCCCCcHHHHHH
Q 002525 717 GAPAQDYKKYDVVLLVGLGIGATPMISIVKDIINNMKSEDNNLESGLTVNNNNKNSSFNTRKAYFYWVTREQGSFEWFKG 796 (912)
Q Consensus 717 G~~~~~~~~y~~vllVagGiGITP~lsiL~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~l~W~~R~~~~~~wf~~ 796 (912)
|.+..+..+++.+|+||||+||||++|++++++++..... .+.++++|+|++|+.+++. |.+
T Consensus 403 G~~~~~~~~~~~vVlIAGGsGITP~lSiL~~ll~~~~~~~-----------------~~~~~V~Li~~vR~~~dL~-f~d 464 (699)
T PLN02631 403 GPNSFDVSRHNSLILVSGGSGITPFISVIRELIFQSQNPS-----------------TKLPDVLLVCSFKHYHDLA-FLD 464 (699)
T ss_pred CCCCCCcCCCCcEEEEEeCcChHhHHHHHHHHHhcccccc-----------------cCCCcEEEEEEECCHHHhh-hHH
Confidence 9876566788999999999999999999999986532211 1245899999999999986 777
Q ss_pred HHHHHHh---hcCCCcEEEEEeeccccC
Q 002525 797 IMNEVAE---MDEKRVIELHNYCTSVYE 821 (912)
Q Consensus 797 ~L~el~~---~~~~~~i~i~iy~T~~~~ 821 (912)
++..++. ...+.++++++|+|++.+
T Consensus 465 eL~~l~~~~~~l~~~ni~i~iyVTR~~~ 492 (699)
T PLN02631 465 LIFPLDISVSDISRLNLRIEAYITREDK 492 (699)
T ss_pred HHhhhccchhhhhcCceEEEEEEcCCCC
Confidence 7765321 111347999999999643
No 3
>PLN02292 ferric-chelate reductase
Probab=100.00 E-value=8.7e-57 Score=532.55 Aligned_cols=339 Identities=24% Similarity=0.408 Sum_probs=271.3
Q ss_pred eeeccchhhhhhHHHHHHHHHhhhH-HHhhcccccccccccCccchhHHHHHHHHHHHHHHHhhhhhhhccccccccccc
Q 002525 401 CIAKGGAETLKFNMALILLPVCRNT-ITWLRNKTKLGLVVPFDDNLNFHKVIAVGIGIGVILHGGAHLTCDFPRLLHATE 479 (912)
Q Consensus 401 ~~ar~~a~~l~~n~~lill~~~Rn~-i~~Lr~~t~l~~~v~~d~~~~fHr~ia~~~~v~~~lH~i~~~~~~f~~~~~~~~ 479 (912)
.+|.++|.+..++|+++++|++||+ +.|++| +||++++.||||+|+++++++++|++++++. +.. .
T Consensus 168 ~vg~R~Gila~~~lpll~l~~~Rnn~L~~ltG-------~s~e~f~~yHRWlGrii~ll~~lH~i~y~i~-~~~-----~ 234 (702)
T PLN02292 168 SIAVRLGLVGNICLAFLFYPVARGSSLLAAVG-------LTSESSIKYHIWLGHLVMTLFTSHGLCYIIY-WIS-----M 234 (702)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHC-------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHh-----c
Confidence 3688889999999999999999985 899998 9999999999999999999999999999875 211 1
Q ss_pred cccccccCccCCCCCCccceeccccchhHHHHHHHHHHHHHHhhhhhhhhccCCCCCccccccccchhhhHHHHHHHHHH
Q 002525 480 EEYEPMKPYFGDEQPDNYWWFVKGVEGVTGIIMVVLMVIAFTLATPWFRRNKLNLPKPLKRLTGFNAFWYSHHLFIIVYT 559 (912)
Q Consensus 480 ~~~~~~~~~~~~~~~~~y~~~~~~~~g~tGii~~vl~~i~~~~s~~~~Rr~~~~~~~~l~~~~~ye~F~~~H~l~~i~~v 559 (912)
..+. ..+ .|+ ..+...++|+++++++.+|+++|+++|||+ +||+|+++|++++++++
T Consensus 235 ~~~~---~~~-------~w~-~~~~~~i~G~iAlv~~~il~v~Sl~~iRR~------------~YE~F~~~HiL~~v~~v 291 (702)
T PLN02292 235 NQVS---QML-------EWD-RTGVSNLAGEIALVAGLVMWATTYPKIRRR------------FFEVFFYTHYLYIVFML 291 (702)
T ss_pred Cchh---hhh-------hcc-ccchHHHHHHHHHHHHHHHHHHhhHHHHhc------------ccHhHHHHHHHHHHHHe
Confidence 1111 000 111 123456899999999999999999999998 79999999999988777
Q ss_pred HHHHHhhhhhhcccccccchhhhhhHhhHHHHHHHHHHHHHhcccceEEEEEEEecCCEEEEEEecCCCccccCccEEEE
Q 002525 560 LLIVHGIKLYLTKKWYQKTTWMYLAVPMVLYACERLTRALRSSIEPVKILKVAVYPGNVLALHMSKPQGFKYKSGQYMFV 639 (912)
Q Consensus 560 ll~~H~~~~~~~~~w~~~~~w~yl~~~~~l~~~dr~~R~~r~~~~~~~i~~v~~~~~~v~~l~~~~p~~~~~~pGQyv~l 639 (912)
++++|.... .+.++++++++|++||++|++|.+ .++++++++.++++++++++++|+.++|+||||+||
T Consensus 292 ~~~~H~~~~----------~~~~~~~~i~l~~~DR~lR~~r~~-~~~~Iv~~~~l~~dvv~L~~~~~~~~~~~PGQ~vfL 360 (702)
T PLN02292 292 FFVFHVGIS----------FALISFPGFYIFLVDRFLRFLQSR-NNVKLVSARVLPCDTVELNFSKNPMLMYSPTSIMFV 360 (702)
T ss_pred eeehhhhhH----------HHHHHHHHHHHHHHHHHHHHHHhh-cceEEEEEEEcCCCEEEEEEEcCCCCCcCCCCeEEE
Confidence 778886421 112334567899999999999874 788999999999999999999998899999999999
Q ss_pred EeCCCCCCcccceeeeecCC--CCeEEEEEEecCcchHHHHHHHhhccCCCCCCCCccchhhhccCCCCCCeEEEeCCCC
Q 002525 640 NCAAVSPFEWHPFSITSSPG--DDYLSVHIRTLGDWTRQLKTVFSEVCQPAPAGKSGLLRAERENNSRGFPKILIDGPYG 717 (912)
Q Consensus 640 ~~p~~s~~e~HPFTIaS~p~--~~~l~l~Ir~~G~~T~~L~~~~~~~~~~~~~g~sg~~~~~~~~~~~~~~~v~IdGPYG 717 (912)
++|..+.+|+|||||+|.|. ++.++++||..|+||++|.+.++. | +.....++.|+||||
T Consensus 361 ~~P~~s~~q~HPFTIaSsp~~~~~~l~l~IK~~G~~T~~L~~~l~~-------g-----------d~i~~~~V~VeGPYG 422 (702)
T PLN02292 361 NIPSISKLQWHPFTITSSSKLEPEKLSVMIKSQGKWSTKLYHMLSS-------S-----------DQIDRLAVSVEGPYG 422 (702)
T ss_pred EEccCCccceeeeEeeccCCCCCCEEEEEEEcCCchhHHHHHhCCC-------C-----------CccccceEEEECCcc
Confidence 99998899999999999874 578999999999999999887621 1 001245799999999
Q ss_pred CCCCCCCCCCEEEEEEcCcchhhHHHHHHHHHHhccccCccccccccccCCCCCCCCCcceEEEEEEeCCCCcHHHHHHH
Q 002525 718 APAQDYKKYDVVLLVGLGIGATPMISIVKDIINNMKSEDNNLESGLTVNNNNKNSSFNTRKAYFYWVTREQGSFEWFKGI 797 (912)
Q Consensus 718 ~~~~~~~~y~~vllVagGiGITP~lsiL~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~l~W~~R~~~~~~wf~~~ 797 (912)
.+..+...++++++||||+||||++|++++++++.... ....++++|+|++|+.+++.|..+.
T Consensus 423 ~~~~~~~~~~~vvlIAGGiGITP~lsil~~L~~~~~~~-----------------~~~~~~V~LIw~vR~~~Dl~~ld~l 485 (702)
T PLN02292 423 PASTDFLRHESLVMVSGGSGITPFISIIRDLIYTSSTE-----------------TCKIPKITLICAFKNSSDLSMLDLI 485 (702)
T ss_pred CCccccccCCcEEEEEeccCHHHHHHHHHHHHhccccc-----------------cCCCCcEEEEEEECCHHHhhHHHHH
Confidence 87666667899999999999999999999998653211 0124789999999999987665444
Q ss_pred HHHH---HhhcCCCcEEEEEeeccccC
Q 002525 798 MNEV---AEMDEKRVIELHNYCTSVYE 821 (912)
Q Consensus 798 L~el---~~~~~~~~i~i~iy~T~~~~ 821 (912)
..|+ .+...+.++++++|+|+..+
T Consensus 486 ~~e~~~~~~l~~~~~~~i~iyvTr~~~ 512 (702)
T PLN02292 486 LPTSGLETELSSFIDIQIKAFVTREKE 512 (702)
T ss_pred HHhhhhHHHHhhcCCceEEEEEeCCCC
Confidence 4443 22223457999999998643
No 4
>PLN02844 oxidoreductase/ferric-chelate reductase
Probab=100.00 E-value=3.4e-56 Score=528.89 Aligned_cols=436 Identities=26% Similarity=0.481 Sum_probs=327.8
Q ss_pred eeeeccchhhhhhHHHHHHHHHhhhH-HHhhcccccccccccCccchhHHHHHHHHHHHHHHHhhhhhhhcccccccccc
Q 002525 400 VCIAKGGAETLKFNMALILLPVCRNT-ITWLRNKTKLGLVVPFDDNLNFHKVIAVGIGIGVILHGGAHLTCDFPRLLHAT 478 (912)
Q Consensus 400 ~~~ar~~a~~l~~n~~lill~~~Rn~-i~~Lr~~t~l~~~v~~d~~~~fHr~ia~~~~v~~~lH~i~~~~~~f~~~~~~~ 478 (912)
..+|++.|.+..+|++++++|++||+ +.|++| +|||+++.||||+|+++++++++|+++|+.. |.. .
T Consensus 153 ~~va~R~G~la~~~Lpll~llv~Rnn~l~~ltG-------is~e~~i~fHrWlGr~~~llallH~i~~~i~-w~~----~ 220 (722)
T PLN02844 153 LRVATRFGLLAEACLALLLLPVLRGLALFRLLG-------IQFEASVRYHVWLGTSMIFFATVHGASTLFI-WGI----S 220 (722)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccHHHHhhC-------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHh----h
Confidence 34788999999999999999999985 789987 9999999999999999999999999988754 110 0
Q ss_pred ccccccccCccCCCCCCcccee-ccccchhHHHHHHHHHHHHHHhhhhhhhhccCCCCCccccccccchhhhHHHHHHHH
Q 002525 479 EEEYEPMKPYFGDEQPDNYWWF-VKGVEGVTGIIMVVLMVIAFTLATPWFRRNKLNLPKPLKRLTGFNAFWYSHHLFIIV 557 (912)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~y~~~-~~~~~g~tGii~~vl~~i~~~~s~~~~Rr~~~~~~~~l~~~~~ye~F~~~H~l~~i~ 557 (912)
.. + ...+|.+ ..+...++|+++++++++|+++|+++|||+ .||+||++|++++++
T Consensus 221 ~~----~--------~~~~~~w~~~~~~~~~G~IAlv~l~iL~itSl~~iRR~------------~YElF~~~H~L~ivf 276 (722)
T PLN02844 221 HH----I--------QDEIWKWQKTGRIYLAGEIALVTGLVIWITSLPQIRRK------------RFEIFYYTHHLYIVF 276 (722)
T ss_pred cc----h--------hhhhhhhccCcchhhhHHHHHHHHHHHHHHhhHHHHhh------------hhHHHHHHHHHHHHH
Confidence 00 0 0011111 122234789999999999999999999998 799999999999887
Q ss_pred HHHHHHHhhhhhhcccccccchhhhhhHhhHHHHHHHHHHHHHhcccceEEEEEEEecCCEEEEEEecCCCccccCccEE
Q 002525 558 YTLLIVHGIKLYLTKKWYQKTTWMYLAVPMVLYACERLTRALRSSIEPVKILKVAVYPGNVLALHMSKPQGFKYKSGQYM 637 (912)
Q Consensus 558 ~vll~~H~~~~~~~~~w~~~~~w~yl~~~~~l~~~dr~~R~~r~~~~~~~i~~v~~~~~~v~~l~~~~p~~~~~~pGQyv 637 (912)
++++++|... ..|.|+++++++|++||++|.++.. ....+++++.+|++++++++++|..++|+||||+
T Consensus 277 lv~~~~H~~~----------~~~~~v~~~i~L~~~DRllR~~~s~-~~~~vvs~~~~~~~~v~l~i~r~~~~~f~PGQfV 345 (722)
T PLN02844 277 LIFFLFHAGD----------RHFYMVFPGIFLFGLDKLLRIVQSR-PETCILSARLFPCKAIELVLPKDPGLKYAPTSVI 345 (722)
T ss_pred HHhhhHhhcC----------cchhhhHHHHHHHHHHHHhheEEEe-eeEEEEEEEEecCCEEEEEEECCCCCCcCCCeeE
Confidence 7888999742 1123455678999999999988765 3344667788899999999999989999999999
Q ss_pred EEEeCCCCCCcccceeeeecC--CCCeEEEEEEecCcchHHHHHHHhhccCCCCCCCCccchhhhccCCCCCCeEEEeCC
Q 002525 638 FVNCAAVSPFEWHPFSITSSP--GDDYLSVHIRTLGDWTRQLKTVFSEVCQPAPAGKSGLLRAERENNSRGFPKILIDGP 715 (912)
Q Consensus 638 ~l~~p~~s~~e~HPFTIaS~p--~~~~l~l~Ir~~G~~T~~L~~~~~~~~~~~~~g~sg~~~~~~~~~~~~~~~v~IdGP 715 (912)
+|++|..+.+|||||||+|.| +++.++++||..|+||++|.+..+...+ .|. ......++.|+||
T Consensus 346 ~L~vp~~s~~q~HPFSIaS~p~~~~~~l~~~IK~~gG~T~~L~~~i~~~l~---~g~----------~~~~~~~v~VeGP 412 (722)
T PLN02844 346 FMKIPSISRFQWHPFSITSSSNIDDHTMSVIIKCEGGWTNSLYNKIQAELD---SET----------NQMNCIPVAIEGP 412 (722)
T ss_pred EEEECCCCceeEEEEEeecCCCCCCCeEEEEEEeCCCchHHHHHHHHhhcc---CCC----------CcccceEEEEECC
Confidence 999999999999999999987 4678999999999999999887642110 000 0001258999999
Q ss_pred CCCCCCCCCCCCEEEEEEcCcchhhHHHHHHHHHHhccccCccccccccccCCCCCCCCCcceEEEEEEeCCCCcHHHHH
Q 002525 716 YGAPAQDYKKYDVVLLVGLGIGATPMISIVKDIINNMKSEDNNLESGLTVNNNNKNSSFNTRKAYFYWVTREQGSFEWFK 795 (912)
Q Consensus 716 YG~~~~~~~~y~~vllVagGiGITP~lsiL~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~l~W~~R~~~~~~wf~ 795 (912)
||.+..+...++++++|||||||||++|+++++.++.+.. ....++|+|+|++|+.+++.|+.
T Consensus 413 YG~~s~~~~~~~~lVLIAGGiGITPfLSiLrdl~~~~~~~-----------------~~~~~~V~LIw~vR~~~dL~~~d 475 (722)
T PLN02844 413 YGPASVDFLRYDSLLLVAGGIGITPFLSILKEIASQSSSR-----------------YRFPKRVQLIYVVKKSQDICLLN 475 (722)
T ss_pred ccCCCCCccCCCeEEEEEcCcCHHHHHHHHHHHHhccccc-----------------cCCCCcEEEEEEECCHHHhhhHH
Confidence 9988666677899999999999999999999998642110 01247899999999999998888
Q ss_pred HHHHHHHhh-cCCCcEEEEEeeccccCCCC---------------------hhH------------HHH-----------
Q 002525 796 GIMNEVAEM-DEKRVIELHNYCTSVYEEGD---------------------ARS------------ALI----------- 830 (912)
Q Consensus 796 ~~L~el~~~-~~~~~i~i~iy~T~~~~~~d---------------------~~s------------~l~----------- 830 (912)
++..++.+. ....++++++|+|++..+.. .+. +.+
T Consensus 476 el~~~l~~~~~~~~~lkl~iyVTRE~~~~~rl~~~i~~~~~~~~~~~~~~~~~~~i~G~~~~lw~~~~~~~s~~~f~~~~ 555 (722)
T PLN02844 476 PISSLLLNQSSNQLNLKLKVFVTQEEKPNATLRELLNQFSQVQTVNFSTKCSRYAIHGLESFLWMAAMVALTSITFLVFL 555 (722)
T ss_pred HHHHHhHHhHHHhcCceEEEEECCCCCCCCchhhHhhccchhhhcCCCCCCCceEEeCCCchHHHHHHHHHHHHHHHHHH
Confidence 776555431 12246899999998654321 000 000
Q ss_pred HHHhh----hcc----------------ccCC------------------------------------ccccc-------
Q 002525 831 AMLQS----LHH----------------AKNG------------------------------------VDVVS------- 847 (912)
Q Consensus 831 ~~~q~----l~~----------------~~~~------------------------------------~d~~s------- 847 (912)
...+. .+| ++++ .+..+
T Consensus 556 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 635 (722)
T PLN02844 556 IGLNHIFIPSEHKSHSGVKMAASGEMKTAKEKTPSWVVDLLLIVSFIIAITCSTFVAIILRWRRLKKEIPRVSQKQGIKP 635 (722)
T ss_pred HHHheEEeccccccccchhcccccccccccCCCchHHHHHHHHHHHHHHheecceEeEeeeccccccCCccccccccCCC
Confidence 00000 000 0000 00000
Q ss_pred -------C----CccccccC-CCCHHHHHHHHHhhCCCCeEEEEEeCChHHHHHHHHHHHhhcc-----C---CCceEEE
Q 002525 848 -------G----TRVKSHFA-KPNWRQVYKRIALHHPDSRIGVFYCGAPALTKELRQLASDFSH-----K---TSTKFEF 907 (912)
Q Consensus 848 -------g----~~v~~~~g-RPd~~~vl~~~~~~~~~~~v~V~~CGP~~m~~~vr~~~~~~~~-----~---~~~~~~f 907 (912)
+ ..-.+|+| |||+++++..+.++..+.+|||.+|||++|-..|.+.|+..+. . ..+.|.|
T Consensus 636 ~~~~~~~~~~~~~~~~~~~g~rp~~~~i~~~~~~~~~~~~vgvlv~gp~~~~~~va~~~~~~~~~~~~~~~~~~~~~~~~ 715 (722)
T PLN02844 636 EEGSMEKRGPVLEEHEIHFGGRPNFQDIFSKFPKETRGSDIGVLVCGPETMKESVASMCRLKSQCFNVGDDGKRKMYFSF 715 (722)
T ss_pred CCccccccccccccceeecCCCCCHHHHHHHhhhhccCCceeEEEeCchHHHHHHHHHHHhcccccccccccccCCceee
Confidence 0 12346777 9999999999999998999999999999999999999998876 2 2467999
Q ss_pred EeecC
Q 002525 908 HKENF 912 (912)
Q Consensus 908 h~E~F 912 (912)
|.=+|
T Consensus 716 hs~~f 720 (722)
T PLN02844 716 HSLNF 720 (722)
T ss_pred eeccc
Confidence 98777
No 5
>COG4097 Predicted ferric reductase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.6e-40 Score=347.70 Aligned_cols=379 Identities=21% Similarity=0.323 Sum_probs=256.6
Q ss_pred hhhhHHHHHHHHHhhhH-H-HhhcccccccccccCccchhHHHHHHHHHHHHHHHhhhhhhhccccccccccccccc--c
Q 002525 409 TLKFNMALILLPVCRNT-I-TWLRNKTKLGLVVPFDDNLNFHKVIAVGIGIGVILHGGAHLTCDFPRLLHATEEEYE--P 484 (912)
Q Consensus 409 ~l~~n~~lill~~~Rn~-i-~~Lr~~t~l~~~v~~d~~~~fHr~ia~~~~v~~~lH~i~~~~~~f~~~~~~~~~~~~--~ 484 (912)
.....|+++++++.|-. + .|+. +.|+.+.+|||.|+.++++.+.|-+......+-- ...-.+. +
T Consensus 47 iaL~~msl~~~LA~R~~~iE~~~~---------GlD~~Y~~HK~~sIlailL~l~H~~~~~~g~w~~---~~~l~~k~a~ 114 (438)
T COG4097 47 IALALMSLIFLLATRLPLIEAWFN---------GLDKIYRFHKYTSILAILLLLAHNFILFIGNWLT---LQLLNFKPAP 114 (438)
T ss_pred HHHHHHHHHHHHHhchHHHhhhhh---------hhhHHhHHHHHHHHHHHHHHHHHHHHHHcCcchh---cccccccccc
Confidence 34567899999999953 3 4443 6899999999999999999999998754442210 0000000 0
Q ss_pred ccCccCCCCCCccceeccccchhHHHHHHHHHHHHHHhhhhhhhhccCCCCCccccccccchhhhHHHHHHHHHHHHHHH
Q 002525 485 MKPYFGDEQPDNYWWFVKGVEGVTGIIMVVLMVIAFTLATPWFRRNKLNLPKPLKRLTGFNAFWYSHHLFIIVYTLLIVH 564 (912)
Q Consensus 485 ~~~~~~~~~~~~y~~~~~~~~g~tGii~~vl~~i~~~~s~~~~Rr~~~~~~~~l~~~~~ye~F~~~H~l~~i~~vll~~H 564 (912)
+++.. ...|...+.+ |-++.-+++.+.++ +..|-+ +.||.|.++|.+++++|++..+|
T Consensus 115 v~~~l-----~~~~~s~~el-G~~~~yi~~~lllV---~~l~~~-------------i~Ye~WR~~H~lm~vvYilg~~H 172 (438)
T COG4097 115 VKPSL-----AGMWRSAKEL-GEWSAYIFIGLLLV---WRLWLN-------------IGYENWRIAHRLMAVVYILGLLH 172 (438)
T ss_pred cchhh-----hhhhHHHHHH-HHHHHHHHHHHHHH---HHHHHh-------------cCchhHHHHHHHHHHHHHHHHHH
Confidence 11111 0112211111 22222222222221 211211 36999999999999999999999
Q ss_pred hhhhhhcccccccch-hh-hhhHhhHHHH--HHHHHHHHHhcccceEEEEEEEecCCEEEEEEecCCCccccCccEEEEE
Q 002525 565 GIKLYLTKKWYQKTT-WM-YLAVPMVLYA--CERLTRALRSSIEPVKILKVAVYPGNVLALHMSKPQGFKYKSGQYMFVN 640 (912)
Q Consensus 565 ~~~~~~~~~w~~~~~-w~-yl~~~~~l~~--~dr~~R~~r~~~~~~~i~~v~~~~~~v~~l~~~~p~~~~~~pGQyv~l~ 640 (912)
.....-...|..+.. |. -+++.+.+++ ..-..+..|++.+..+++.++..+.++++++.....++.|+|||+.||.
T Consensus 173 ~~~l~~~~~~s~~a~swl~~~~allG~l~~iysi~~y~~~s~~y~~~vt~~~r~~~~t~eit~~l~~~~~~qaGQFAfLk 252 (438)
T COG4097 173 SYGLLNYLYLSWPAVSWLVIAFALLGLLAAIYSIFGYFGRSFPYLGKVTAPQRGNVDTLEITIGLQGPWLYQAGQFAFLK 252 (438)
T ss_pred HHHhcchhHhhccHHHHHHHHHHHHHHHHHHHHHHHHhhcccccceEEechhhcCcchheeecccCCcccccCCceEEEE
Confidence 875433233332332 43 2222233333 3334455677777888888888888999988887777889999999999
Q ss_pred eCCCC-CCcccceeeeecCCCCeEEEEEEecCcchHHHHHHHhhccCCCCCCCCccchhhhccCCCCCCeEEEeCCCCCC
Q 002525 641 CAAVS-PFEWHPFSITSSPGDDYLSVHIRTLGDWTRQLKTVFSEVCQPAPAGKSGLLRAERENNSRGFPKILIDGPYGAP 719 (912)
Q Consensus 641 ~p~~s-~~e~HPFTIaS~p~~~~l~l~Ir~~G~~T~~L~~~~~~~~~~~~~g~sg~~~~~~~~~~~~~~~v~IdGPYG~~ 719 (912)
|+... .+..|||||+++.+...+.|.||+.||+|+.|++.+ +.+.++.+|||||.+
T Consensus 253 ~~~~~~~~~~HPFTIa~s~~~sel~FsIK~LGD~Tk~l~dnL-----------------------k~G~k~~vdGPYG~F 309 (438)
T COG4097 253 IEIEEFRMRPHPFTIACSHEGSELRFSIKALGDFTKTLKDNL-----------------------KVGTKLEVDGPYGKF 309 (438)
T ss_pred eccccccCCCCCeeeeeCCCCceEEEEehhhhhhhHHHHHhc-----------------------cCCceEEEecCccee
Confidence 98754 567999999999888899999999999999999866 257899999999997
Q ss_pred CCCCCCCC-EEEEEEcCcchhhHHHHHHHHHHhccccCccccccccccCCCCCCCCCcceEEEEEEeCCCCcHHHHHHHH
Q 002525 720 AQDYKKYD-VVLLVGLGIGATPMISIVKDIINNMKSEDNNLESGLTVNNNNKNSSFNTRKAYFYWVTREQGSFEWFKGIM 798 (912)
Q Consensus 720 ~~~~~~y~-~vllVagGiGITP~lsiL~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~l~W~~R~~~~~~wf~~~L 798 (912)
. +..+. +-|+|||||||||++|+++.+... + ..+.|+|++++|+.++. -+.++|
T Consensus 310 ~--~~~g~~~QVWIAGGIGITPFis~l~~l~~~-~---------------------s~~~V~L~Y~~~n~e~~-~y~~eL 364 (438)
T COG4097 310 D--FERGLNTQVWIAGGIGITPFISMLFTLAER-K---------------------SDPPVHLFYCSRNWEEA-LYAEEL 364 (438)
T ss_pred e--cccCCcccEEEecCcCcchHHHHHHhhccc-c---------------------cCCceEEEEEecCCchh-HHHHHH
Confidence 4 44443 389999999999999999998652 1 14689999999999986 688899
Q ss_pred HHHHhhcCCCcEEEEEeeccccCCCChhHHHHHHHhhhccccCCcccccCCccccccCCCCHHHHHHHHHhhCCCCeEEE
Q 002525 799 NEVAEMDEKRVIELHNYCTSVYEEGDARSALIAMLQSLHHAKNGVDVVSGTRVKSHFAKPNWRQVYKRIALHHPDSRIGV 878 (912)
Q Consensus 799 ~el~~~~~~~~i~i~iy~T~~~~~~d~~s~l~~~~q~l~~~~~~~d~~sg~~v~~~~gRPd~~~vl~~~~~~~~~~~v~V 878 (912)
+++++.. .++++|+.-++... --+.+++-+. .++ +..-.|
T Consensus 365 r~~~qkl--~~~~lHiiDSs~~g-----------------------------------~l~~e~ler~--~~~-~~~~sv 404 (438)
T COG4097 365 RALAQKL--PNVVLHIIDSSKDG-----------------------------------YLDQEDLERY--PDR-PRTRSV 404 (438)
T ss_pred HHHHhcC--CCeEEEEecCCCCC-----------------------------------ccCHHHhhcc--ccc-cCcceE
Confidence 9988743 35888873332211 1111111111 011 112369
Q ss_pred EEeCChHHHHHHHHHHHhhccCCCceEEEEeecC
Q 002525 879 FYCGAPALTKELRQLASDFSHKTSTKFEFHKENF 912 (912)
Q Consensus 879 ~~CGP~~m~~~vr~~~~~~~~~~~~~~~fh~E~F 912 (912)
|+|||++|++.+|+.....+-+. + +||.|+|
T Consensus 405 ~fCGP~~m~dsL~r~l~~~~~~i--~-~~h~E~F 435 (438)
T COG4097 405 FFCGPIKMMDSLRRDLKKQNVPI--T-NFHYEHF 435 (438)
T ss_pred EEEcCHHHHHHHHHHHHHcCCCH--H-HHHHHhc
Confidence 99999999999999888875442 1 8999987
No 6
>cd06186 NOX_Duox_like_FAD_NADP NADPH oxidase (NOX) catalyzes the generation of reactive oxygen species (ROS) such as superoxide and hydrogen peroxide. ROS were originally identified as bactericidal agents in phagocytes, but are now also implicated in cell signaling and metabolism. NOX has a 6-alpha helix heme-binding transmembrane domain fused to a flavoprotein with the nucleotide binding domain located in the cytoplasm. Duox enzymes link a peroxidase domain to the NOX domain via a single transmembrane and EF-hand Ca2+ binding sites. The flavoprotein module has a ferredoxin like FAD/NADPH binding domain. In classical phagocytic NOX2, electron transfer occurs from NADPH to FAD to the heme of cytb to oxygen leading to superoxide formation.
Probab=100.00 E-value=1.7e-32 Score=287.09 Aligned_cols=205 Identities=35% Similarity=0.635 Sum_probs=165.9
Q ss_pred EEEEEec-CCEEEEEEecCCCccccCccEEEEEeCCC-CCCcccceeeeecCCC--CeEEEEEEecCcchHHHHHHHhhc
Q 002525 609 LKVAVYP-GNVLALHMSKPQGFKYKSGQYMFVNCAAV-SPFEWHPFSITSSPGD--DYLSVHIRTLGDWTRQLKTVFSEV 684 (912)
Q Consensus 609 ~~v~~~~-~~v~~l~~~~p~~~~~~pGQyv~l~~p~~-s~~e~HPFTIaS~p~~--~~l~l~Ir~~G~~T~~L~~~~~~~ 684 (912)
++++.++ +++++|+++.|..+.|+||||++|++|.. +.+++|||||+|.|.+ +.++|+||..+|+|+++...+.+.
T Consensus 2 ~~~~~~~~~~~~~l~~~~~~~~~~~pGq~v~l~~~~~~~~~~~hpfsias~~~~~~~~i~~~vk~~~G~~t~~~~~~~~~ 81 (210)
T cd06186 2 ATVELLPDSDVIRLTIPKPKPFKWKPGQHVYLNFPSLLSFWQSHPFTIASSPEDEQDTLSLIIRAKKGFTTRLLRKALKS 81 (210)
T ss_pred eEEEEecCCCEEEEEEecCCCCccCCCCEEEEEeCCCCCCcccCCcEeeeCCCCCCCEEEEEEEecCChHHHHHHHHHhC
Confidence 4677888 99999999998889999999999999998 7899999999999976 899999999955555565544210
Q ss_pred cCCCCCCCCccchhhhccCCCCCCeEEEeCCCCCCCCCCCCCCEEEEEEcCcchhhHHHHHHHHHHhccccCcccccccc
Q 002525 685 CQPAPAGKSGLLRAERENNSRGFPKILIDGPYGAPAQDYKKYDVVLLVGLGIGATPMISIVKDIINNMKSEDNNLESGLT 764 (912)
Q Consensus 685 ~~~~~~g~sg~~~~~~~~~~~~~~~v~IdGPYG~~~~~~~~y~~vllVagGiGITP~lsiL~~l~~~~~~~~~~~~~~~~ 764 (912)
.+...+.++.|+||||.+..+...++++||||||+||||++|++++++.+...
T Consensus 82 -----------------~~~~~~~~v~v~GP~G~~~~~~~~~~~~vliagG~GItp~~s~l~~l~~~~~~---------- 134 (210)
T cd06186 82 -----------------PGGGVSLKVLVEGPYGSSSEDLLSYDNVLLVAGGSGITFVLPILRDLLRRSSK---------- 134 (210)
T ss_pred -----------------cCCCceeEEEEECCCCCCccChhhCCeEEEEeccccHhhhHHHHHHHHhhhhc----------
Confidence 01125678999999999864566789999999999999999999999876321
Q ss_pred ccCCCCCCCCCcceEEEEEEeCCCCcHHHHHHHHHHHHhhcCCCcEEEEEeeccccCCCChhHHHHHHHhhhccccCCcc
Q 002525 765 VNNNNKNSSFNTRKAYFYWVTREQGSFEWFKGIMNEVAEMDEKRVIELHNYCTSVYEEGDARSALIAMLQSLHHAKNGVD 844 (912)
Q Consensus 765 ~~~~~~~~~~~~~rv~l~W~~R~~~~~~wf~~~L~el~~~~~~~~i~i~iy~T~~~~~~d~~s~l~~~~q~l~~~~~~~d 844 (912)
....++++|+|++|+.+++.||.++|.+..+..... ++++|+|+
T Consensus 135 --------~~~~~~v~l~w~~r~~~~~~~~~~~l~~~~~~~~~~--~~~i~~T~-------------------------- 178 (210)
T cd06186 135 --------TSRTRRVKLVWVVRDREDLEWFLDELRAAQELEVDG--EIEIYVTR-------------------------- 178 (210)
T ss_pred --------cCCccEEEEEEEECCHHHhHHHHHHHHhhhhccCCc--eEEEEEee--------------------------
Confidence 012578999999999999999999987522222111 67777761
Q ss_pred cccCCccccccCCCCHHHHHHHHHhhCCCCeEEEEEeCChHHHHHHHHHHHhhccCCCceEEEEeecC
Q 002525 845 VVSGTRVKSHFAKPNWRQVYKRIALHHPDSRIGVFYCGAPALTKELRQLASDFSHKTSTKFEFHKENF 912 (912)
Q Consensus 845 ~~sg~~v~~~~gRPd~~~vl~~~~~~~~~~~v~V~~CGP~~m~~~vr~~~~~~~~~~~~~~~fh~E~F 912 (912)
|++|||++|++++++.+.+ +....+.||+|.|
T Consensus 179 ---------------------------------v~~CGp~~~~~~~~~~~~~---~~~~~~~~~~e~f 210 (210)
T cd06186 179 ---------------------------------VVVCGPPGLVDDVRNAVAK---KGGTGVEFHEESF 210 (210)
T ss_pred ---------------------------------EEEECchhhccHHHHHHhh---cCCCceEEEeecC
Confidence 9999999999999998887 4457899999998
No 7
>cd06216 FNR_iron_sulfur_binding_2 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to for
Probab=99.95 E-value=1.8e-26 Score=247.25 Aligned_cols=233 Identities=16% Similarity=0.238 Sum_probs=178.7
Q ss_pred HHHHHHHHHhc----ccceEEEEEEEecCCEEEEEEecCCC-ccccCccEEEEEeCCCCCCcccceeeeecCC--CCeEE
Q 002525 592 CERLTRALRSS----IEPVKILKVAVYPGNVLALHMSKPQG-FKYKSGQYMFVNCAAVSPFEWHPFSITSSPG--DDYLS 664 (912)
Q Consensus 592 ~dr~~R~~r~~----~~~~~i~~v~~~~~~v~~l~~~~p~~-~~~~pGQyv~l~~p~~s~~e~HPFTIaS~p~--~~~l~ 664 (912)
+||.+|+++.. ...++|++++.+++++.++++..|.. ..|+||||++|.+|..+...+|||||+|.|. ++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~i~l~~~~~~~~~~pGQ~i~l~~~~~~~~~~r~ysi~s~~~~~~~~l~ 81 (243)
T cd06216 2 VDFYLELINPLWSARELRARVVAVRPETADMVTLTLRPNRGWPGHRAGQHVRLGVEIDGVRHWRSYSLSSSPTQEDGTIT 81 (243)
T ss_pred chhhhhhcCCCcccceeEEEEEEEEEcCCCcEEEEEecCCCCCCcCCCceEEEEEEECCeEEEEEEeccCCCcCCCCeEE
Confidence 47778876543 34578899999999999999998765 4799999999999866666789999999986 78899
Q ss_pred EEEEec--CcchHHHHHHHhhccCCCCCCCCccchhhhccCCCCCCeEEEeCCCCCCCCCCCCCCEEEEEEcCcchhhHH
Q 002525 665 VHIRTL--GDWTRQLKTVFSEVCQPAPAGKSGLLRAERENNSRGFPKILIDGPYGAPAQDYKKYDVVLLVGLGIGATPMI 742 (912)
Q Consensus 665 l~Ir~~--G~~T~~L~~~~~~~~~~~~~g~sg~~~~~~~~~~~~~~~v~IdGPYG~~~~~~~~y~~vllVagGiGITP~l 742 (912)
|+||.. |.+|..|.+.+ ..+.++.|.||||.+..+...++.+++||||+||||++
T Consensus 82 ~~ik~~~~G~~s~~l~~~~-----------------------~~Gd~v~i~gP~G~f~l~~~~~~~~v~iagG~Giap~~ 138 (243)
T cd06216 82 LTVKAQPDGLVSNWLVNHL-----------------------APGDVVELSQPQGDFVLPDPLPPRLLLIAAGSGITPVM 138 (243)
T ss_pred EEEEEcCCCcchhHHHhcC-----------------------CCCCEEEEECCceeeecCCCCCCCEEEEecCccHhHHH
Confidence 999998 88999887533 14678999999998754433467899999999999999
Q ss_pred HHHHHHHHhccccCccccccccccCCCCCCCCCcceEEEEEEeCCCCcHHHHHHHHHHHHhhcCCCcEEEEEeeccccCC
Q 002525 743 SIVKDIINNMKSEDNNLESGLTVNNNNKNSSFNTRKAYFYWVTREQGSFEWFKGIMNEVAEMDEKRVIELHNYCTSVYEE 822 (912)
Q Consensus 743 siL~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~l~W~~R~~~~~~wf~~~L~el~~~~~~~~i~i~iy~T~~~~~ 822 (912)
|+++++.... ..++++++|++|+.+++ ++.++|+++++.. ..++++.++|+.
T Consensus 139 s~l~~~~~~~----------------------~~~~i~l~~~~r~~~~~-~~~~el~~l~~~~--~~~~~~~~~s~~--- 190 (243)
T cd06216 139 SMLRTLLARG----------------------PTADVVLLYYARTREDV-IFADELRALAAQH--PNLRLHLLYTRE--- 190 (243)
T ss_pred HHHHHHHhcC----------------------CCCCEEEEEEcCChhhh-HHHHHHHHHHHhC--CCeEEEEEEcCC---
Confidence 9999987542 14679999999999886 8888888887543 357888777642
Q ss_pred CChhHHHHHHHhhhccccCCcccccCCccccccCCCCHHHHHHHHHhhCCCCeEEEEEeCChHHHHHHHHHHHhhccCCC
Q 002525 823 GDARSALIAMLQSLHHAKNGVDVVSGTRVKSHFAKPNWRQVYKRIALHHPDSRIGVFYCGAPALTKELRQLASDFSHKTS 902 (912)
Q Consensus 823 ~d~~s~l~~~~q~l~~~~~~~d~~sg~~v~~~~gRPd~~~vl~~~~~~~~~~~v~V~~CGP~~m~~~vr~~~~~~~~~~~ 902 (912)
+ ..||.+.. .+++..... ....||+|||++|++++++.+.+.. -
T Consensus 191 ~------------------------------~~g~~~~~-~l~~~~~~~--~~~~vyvcGp~~m~~~~~~~l~~~G---v 234 (243)
T cd06216 191 E------------------------------LDGRLSAA-HLDAVVPDL--ADRQVYACGPPGFLDAAEELLEAAG---L 234 (243)
T ss_pred c------------------------------cCCCCCHH-HHHHhccCc--ccCeEEEECCHHHHHHHHHHHHHCC---C
Confidence 0 11344322 233332211 2358999999999999999887743 3
Q ss_pred ceEEEEeecC
Q 002525 903 TKFEFHKENF 912 (912)
Q Consensus 903 ~~~~fh~E~F 912 (912)
. -.+|.|.|
T Consensus 235 ~-~~i~~e~F 243 (243)
T cd06216 235 A-DRLHTERF 243 (243)
T ss_pred c-cceeeccC
Confidence 3 56888887
No 8
>cd06195 FNR1 Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.
Probab=99.95 E-value=1.5e-26 Score=247.57 Aligned_cols=228 Identities=16% Similarity=0.212 Sum_probs=170.9
Q ss_pred EEEEEEecCCEEEEEEecCCCccccCccEEEEEeCCC-CCCcccceeeeecCCCCeEEEEEEec--CcchHHHHHHHhhc
Q 002525 608 ILKVAVYPGNVLALHMSKPQGFKYKSGQYMFVNCAAV-SPFEWHPFSITSSPGDDYLSVHIRTL--GDWTRQLKTVFSEV 684 (912)
Q Consensus 608 i~~v~~~~~~v~~l~~~~p~~~~~~pGQyv~l~~p~~-s~~e~HPFTIaS~p~~~~l~l~Ir~~--G~~T~~L~~~~~~~ 684 (912)
|++++.+++++++|+++.|..+.|+||||+.|++|.. +...+|||||+|.|.++.++|+||.. |.+|+.|.++.
T Consensus 2 v~~~~~~t~~~~~~~l~~~~~~~~~pGQ~v~l~~~~~~~~~~~R~ySi~s~~~~~~i~~~i~~~~~G~~s~~l~~l~--- 78 (241)
T cd06195 2 VLKRRDWTDDLFSFRVTRDIPFRFQAGQFTKLGLPNDDGKLVRRAYSIASAPYEENLEFYIILVPDGPLTPRLFKLK--- 78 (241)
T ss_pred eEEEEEcCCCEEEEEEcCCCCCccCCCCeEEEeccCCCCCeeeecccccCCCCCCeEEEEEEEecCCCCchHHhcCC---
Confidence 6778889999999999988778899999999999876 66789999999999888999999976 88999886422
Q ss_pred cCCCCCCCCccchhhhccCCCCCCeEEEe-CCCCCCCCCCC-CCCEEEEEEcCcchhhHHHHHHHHHHhccccCcccccc
Q 002525 685 CQPAPAGKSGLLRAERENNSRGFPKILID-GPYGAPAQDYK-KYDVVLLVGLGIGATPMISIVKDIINNMKSEDNNLESG 762 (912)
Q Consensus 685 ~~~~~~g~sg~~~~~~~~~~~~~~~v~Id-GPYG~~~~~~~-~y~~vllVagGiGITP~lsiL~~l~~~~~~~~~~~~~~ 762 (912)
.+..+.+. ||||.+..+.. ..+.+||||||+||||++++++++....
T Consensus 79 ---------------------~Gd~v~v~~gP~G~f~~~~~~~~~~~vlIagGtGiaP~~~~l~~~~~~~---------- 127 (241)
T cd06195 79 ---------------------PGDTIYVGKKPTGFLTLDEVPPGKRLWLLATGTGIAPFLSMLRDLEIWE---------- 127 (241)
T ss_pred ---------------------CCCEEEECcCCCCceeecCCCCCceEEEEeeccchhhHHHHHHHHHhhC----------
Confidence 46789999 99999754433 4679999999999999999999987431
Q ss_pred ccccCCCCCCCCCcceEEEEEEeCCCCcHHHHHHHHHHHHhhcCCCcEEEEEeeccccCCCChhHHHHHHHhhhccccCC
Q 002525 763 LTVNNNNKNSSFNTRKAYFYWVTREQGSFEWFKGIMNEVAEMDEKRVIELHNYCTSVYEEGDARSALIAMLQSLHHAKNG 842 (912)
Q Consensus 763 ~~~~~~~~~~~~~~~rv~l~W~~R~~~~~~wf~~~L~el~~~~~~~~i~i~iy~T~~~~~~d~~s~l~~~~q~l~~~~~~ 842 (912)
..++++|+|++|+.+++ +|.++|+++++.. ...++++.++|+..+..
T Consensus 128 ------------~~~~v~l~~~~r~~~d~-~~~~el~~l~~~~-~~~~~~~~~~s~~~~~~------------------- 174 (241)
T cd06195 128 ------------RFDKIVLVHGVRYAEEL-AYQDEIEALAKQY-NGKFRYVPIVSREKENG------------------- 174 (241)
T ss_pred ------------CCCcEEEEEccCCHHHh-hhHHHHHHHHhhc-CCCEEEEEEECcCCccC-------------------
Confidence 14689999999999997 7899999887652 23688887777532110
Q ss_pred cccccCCccccccCCCCHH---HHHHHHHhhC-CCCeEEEEEeCChHHHHHHHHHHHhhccCC---CceEEEEeecC
Q 002525 843 VDVVSGTRVKSHFAKPNWR---QVYKRIALHH-PDSRIGVFYCGAPALTKELRQLASDFSHKT---STKFEFHKENF 912 (912)
Q Consensus 843 ~d~~sg~~v~~~~gRPd~~---~vl~~~~~~~-~~~~v~V~~CGP~~m~~~vr~~~~~~~~~~---~~~~~fh~E~F 912 (912)
| ..||.+-. +.+.+..... ......||+|||++|++.+++.+.+...+. ...-.+|.|.|
T Consensus 175 -----~-----~~g~v~~~l~~~~l~~~~~~~~~~~~~~vyiCGp~~m~~~~~~~l~~~G~~~~~~~~~~~~~~E~~ 241 (241)
T cd06195 175 -----A-----LTGRIPDLIESGELEEHAGLPLDPETSHVMLCGNPQMIDDTQELLKEKGFSKNHRRKPGNITVEKY 241 (241)
T ss_pred -----C-----CceEhHHhhhhchhhHhhCCCCCcccCEEEEeCCHHHHHHHHHHHHHcCCCccccCCCceEEEecC
Confidence 0 01222110 1111211111 123457999999999999999998875431 12278999988
No 9
>cd06189 flavin_oxioreductase NAD(P)H dependent flavin oxidoreductases use flavin as a substrate in mediating electron transfer from iron complexes or iron proteins. Structurally similar to ferredoxin reductases, but with only 15% sequence identity, flavin reductases reduce FAD, FMN, or riboflavin via NAD(P)H. Flavin is used as a substrate, rather than a tightly bound prosthetic group as in flavoenzymes; weaker binding is due to the absence of a binding site for the AMP moeity of FAD.
Probab=99.95 E-value=1.8e-26 Score=244.10 Aligned_cols=220 Identities=20% Similarity=0.327 Sum_probs=167.2
Q ss_pred EEEEEEEecCCEEEEEEecCCCccccCccEEEEEeCCCCCCcccceeeeecCC-CCeEEEEEEec--CcchHHHHHHHhh
Q 002525 607 KILKVAVYPGNVLALHMSKPQGFKYKSGQYMFVNCAAVSPFEWHPFSITSSPG-DDYLSVHIRTL--GDWTRQLKTVFSE 683 (912)
Q Consensus 607 ~i~~v~~~~~~v~~l~~~~p~~~~~~pGQyv~l~~p~~s~~e~HPFTIaS~p~-~~~l~l~Ir~~--G~~T~~L~~~~~~ 683 (912)
+|++++.+++++++|+++.|..++|+||||++|.+|.. .+|||||+|.|. ++.++|+||.. |.+|+.|.+.+
T Consensus 2 ~v~~~~~~t~~~~~l~l~~~~~~~~~pGQ~v~l~~~~~---~~r~ySi~s~~~~~~~l~~~vk~~~~G~~s~~l~~~l-- 76 (224)
T cd06189 2 KVESIEPLNDDVYRVRLKPPAPLDFLAGQYLDLLLDDG---DKRPFSIASAPHEDGEIELHIRAVPGGSFSDYVFEEL-- 76 (224)
T ss_pred EEEEEEeCCCceEEEEEecCCCcccCCCCEEEEEcCCC---CceeeecccCCCCCCeEEEEEEecCCCccHHHHHHhc--
Confidence 67888899999999999998788999999999999864 589999999997 67899999998 78999888644
Q ss_pred ccCCCCCCCCccchhhhccCCCCCCeEEEeCCCCCCCCCCCCCCEEEEEEcCcchhhHHHHHHHHHHhccccCccccccc
Q 002525 684 VCQPAPAGKSGLLRAERENNSRGFPKILIDGPYGAPAQDYKKYDVVLLVGLGIGATPMISIVKDIINNMKSEDNNLESGL 763 (912)
Q Consensus 684 ~~~~~~~g~sg~~~~~~~~~~~~~~~v~IdGPYG~~~~~~~~y~~vllVagGiGITP~lsiL~~l~~~~~~~~~~~~~~~ 763 (912)
..+..+.|.||||.+......++.+||||||+||||++|++++++...
T Consensus 77 ---------------------~~G~~v~i~gP~G~~~~~~~~~~~ivliagG~GiaP~~~~l~~l~~~~----------- 124 (224)
T cd06189 77 ---------------------KENGLVRIEGPLGDFFLREDSDRPLILIAGGTGFAPIKSILEHLLAQG----------- 124 (224)
T ss_pred ---------------------cCCCEEEEecCCccEEeccCCCCCEEEEecCcCHHHHHHHHHHHHhcC-----------
Confidence 146789999999998654445788999999999999999999997642
Q ss_pred cccCCCCCCCCCcceEEEEEEeCCCCcHHHHHHHHHHHHhhcCCCcEEEEEeeccccCCCChhHHHHHHHhhhccccCCc
Q 002525 764 TVNNNNKNSSFNTRKAYFYWVTREQGSFEWFKGIMNEVAEMDEKRVIELHNYCTSVYEEGDARSALIAMLQSLHHAKNGV 843 (912)
Q Consensus 764 ~~~~~~~~~~~~~~rv~l~W~~R~~~~~~wf~~~L~el~~~~~~~~i~i~iy~T~~~~~~d~~s~l~~~~q~l~~~~~~~ 843 (912)
..++++|+|++|+.+++ ++.++|+++++.. .+++++.++++..+. .
T Consensus 125 -----------~~~~v~l~~~~r~~~~~-~~~~~l~~l~~~~--~~~~~~~~~s~~~~~--~------------------ 170 (224)
T cd06189 125 -----------SKRPIHLYWGARTEEDL-YLDELLEAWAEAH--PNFTYVPVLSEPEEG--W------------------ 170 (224)
T ss_pred -----------CCCCEEEEEecCChhhc-cCHHHHHHHHHhC--CCeEEEEEeCCCCcC--C------------------
Confidence 13679999999999987 6788888887653 357777777653110 0
Q ss_pred ccccCCccccccCCCCHHHHHHHHHhhCCCCeEEEEEeCChHHHHHHHHHHHhhccCCCceEEEEeecC
Q 002525 844 DVVSGTRVKSHFAKPNWRQVYKRIALHHPDSRIGVFYCGAPALTKELRQLASDFSHKTSTKFEFHKENF 912 (912)
Q Consensus 844 d~~sg~~v~~~~gRPd~~~vl~~~~~~~~~~~v~V~~CGP~~m~~~vr~~~~~~~~~~~~~~~fh~E~F 912 (912)
.| +.|+ +.+.+.+... ......||+|||++|++++++.+.+..- ..-.+|.|.|
T Consensus 171 ---~g-----~~g~--v~~~l~~~~~--~~~~~~v~vCGp~~m~~~~~~~l~~~G~---~~~~i~~e~f 224 (224)
T cd06189 171 ---QG-----RTGL--VHEAVLEDFP--DLSDFDVYACGSPEMVYAARDDFVEKGL---PEENFFSDAF 224 (224)
T ss_pred ---cc-----cccc--HHHHHHhhcc--CccccEEEEECCHHHHHHHHHHHHHcCC---CHHHcccCCC
Confidence 00 0111 1122211111 1123579999999999999999987543 3556888887
No 10
>cd06197 FNR_like_2 FAD/NAD(P) binding domain of ferredoxin reductase-like proteins. Ferredoxin reductase (FNR) was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and have a variety of physiological functions in a variety of organisms including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal moeity
Probab=99.95 E-value=1.4e-26 Score=244.21 Aligned_cols=192 Identities=19% Similarity=0.299 Sum_probs=148.0
Q ss_pred EEEEecCCEEEEEEecCCC---ccccCccEEEEEeCCCC----------------CCcccceeeeecCCC----CeEEEE
Q 002525 610 KVAVYPGNVLALHMSKPQG---FKYKSGQYMFVNCAAVS----------------PFEWHPFSITSSPGD----DYLSVH 666 (912)
Q Consensus 610 ~v~~~~~~v~~l~~~~p~~---~~~~pGQyv~l~~p~~s----------------~~e~HPFTIaS~p~~----~~l~l~ 666 (912)
+.+.++++|.++++..|.+ +.|+|||||+|++|... ...+|||||+|.|.+ +.+.|+
T Consensus 2 ~~~~~s~~v~~~~l~~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~~~~~~p~~~~~~~~R~ySias~p~~~~~~~~l~l~ 81 (220)
T cd06197 2 KSEVITPTLTRFTFELSPPDVVGKWTPGQYITLDFSSELDSGYSHMADDDPQSLNDDFVRTFTVSSAPPHDPATDEFEIT 81 (220)
T ss_pred cceecccceeEEEEEecCCccccccCCCceEEEEccccccccccccccCCcchhcCCceeeEEeecCCccCCCCCEEEEE
Confidence 3466789999999998877 89999999999998531 134688999999964 689999
Q ss_pred EEecCcchHHHHHHHhhccCCCCCCCCccchhhhccCCCCCCeEEEeCCCCCCCCCC---CCCCEEEEEEcCcchhhHHH
Q 002525 667 IRTLGDWTRQLKTVFSEVCQPAPAGKSGLLRAERENNSRGFPKILIDGPYGAPAQDY---KKYDVVLLVGLGIGATPMIS 743 (912)
Q Consensus 667 Ir~~G~~T~~L~~~~~~~~~~~~~g~sg~~~~~~~~~~~~~~~v~IdGPYG~~~~~~---~~y~~vllVagGiGITP~ls 743 (912)
||..|++|+.|.+...+ ....+..+.|+||||.+..+. ..++.+|||||||||||++|
T Consensus 82 vk~~G~~T~~L~~~~~~-------------------~~~~G~~v~v~gP~G~f~~~~~~~~~~~~illIagG~GItP~~s 142 (220)
T cd06197 82 VRKKGPVTGFLFQVARR-------------------LREQGLEVPVLGVGGEFTLSLPGEGAERKMVWIAGGVGITPFLA 142 (220)
T ss_pred EEeCCCCCHHHHHhhhc-------------------ccCCCceEEEEecCCcccCCcccccCCceEEEEecccchhhHHH
Confidence 99999999999987621 001267899999999875432 34678999999999999999
Q ss_pred HHHHHHHhccccCccccccccccCCCCCCCCCcceEEEEEEeCCCCcHHHHHHHHHHHHhhcCCCcEEEEEeeccccCCC
Q 002525 744 IVKDIINNMKSEDNNLESGLTVNNNNKNSSFNTRKAYFYWVTREQGSFEWFKGIMNEVAEMDEKRVIELHNYCTSVYEEG 823 (912)
Q Consensus 744 iL~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~l~W~~R~~~~~~wf~~~L~el~~~~~~~~i~i~iy~T~~~~~~ 823 (912)
++++++.... ..++++|+|++|+.+++ +|.++|.++.+. .++++.+.|
T Consensus 143 il~~l~~~~~---------------------~~~~v~l~~~~r~~~~~-~~~~el~~~~~~----~~~~~~~~~------ 190 (220)
T cd06197 143 MLRAILSSRN---------------------TTWDITLLWSLREDDLP-LVMDTLVRFPGL----PVSTTLFIT------ 190 (220)
T ss_pred HHHHHHhccc---------------------CCCcEEEEEEecchhhH-HHHHHHHhccCC----ceEEEEEEe------
Confidence 9999875411 14689999999999986 677766554321 122222111
Q ss_pred ChhHHHHHHHhhhccccCCcccccCCccccccCCCCHHHHHHHHHhhCCCCeEEEEEeCChHHHHHHHHHHHhhccCCCc
Q 002525 824 DARSALIAMLQSLHHAKNGVDVVSGTRVKSHFAKPNWRQVYKRIALHHPDSRIGVFYCGAPALTKELRQLASDFSHKTST 903 (912)
Q Consensus 824 d~~s~l~~~~q~l~~~~~~~d~~sg~~v~~~~gRPd~~~vl~~~~~~~~~~~v~V~~CGP~~m~~~vr~~~~~~~~~~~~ 903 (912)
+ .||+|||++|++++++.+.+.
T Consensus 191 --------------------------------~--------------------~v~~CGP~~m~~~~~~~~~~~------ 212 (220)
T cd06197 191 --------------------------------S--------------------EVYLCGPPALEKAVLEWLEGK------ 212 (220)
T ss_pred --------------------------------c--------------------cEEEECcHHHHHHHHHHhhhc------
Confidence 0 599999999999999987753
Q ss_pred eEEEEeecC
Q 002525 904 KFEFHKENF 912 (912)
Q Consensus 904 ~~~fh~E~F 912 (912)
.+|.|.|
T Consensus 213 --~~~~e~f 219 (220)
T cd06197 213 --KVHRESF 219 (220)
T ss_pred --eeEeccc
Confidence 6899988
No 11
>cd06198 FNR_like_3 NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) domain, which varies in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=99.95 E-value=3.1e-26 Score=240.99 Aligned_cols=207 Identities=22% Similarity=0.407 Sum_probs=155.3
Q ss_pred CCEEEEEEecCCC-ccccCccEEEEEeCCCCCCcccceeeeecCCC-CeEEEEEEecCcchHHHHHHHhhccCCCCCCCC
Q 002525 616 GNVLALHMSKPQG-FKYKSGQYMFVNCAAVSPFEWHPFSITSSPGD-DYLSVHIRTLGDWTRQLKTVFSEVCQPAPAGKS 693 (912)
Q Consensus 616 ~~v~~l~~~~p~~-~~~~pGQyv~l~~p~~s~~e~HPFTIaS~p~~-~~l~l~Ir~~G~~T~~L~~~~~~~~~~~~~g~s 693 (912)
.++.+|++..+.+ +.|+|||||+|++|..+.+++|||||+|.|.+ +.++|+||..|++|+.|.+.+
T Consensus 7 ~~~~~i~l~~~~~~~~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~~~~~l~l~vk~~G~~t~~l~~~l------------ 74 (216)
T cd06198 7 RPTTTLTLEPRGPALGHRAGQFAFLRFDASGWEEPHPFTISSAPDPDGRLRFTIKALGDYTRRLAERL------------ 74 (216)
T ss_pred cceEEEEEeeCCCCCCcCCCCEEEEEeCCCCCCCCCCcEEecCCCCCCeEEEEEEeCChHHHHHHHhC------------
Confidence 4678888887665 78999999999998766689999999999876 599999999999999998544
Q ss_pred ccchhhhccCCCCCCeEEEeCCCCCCCCCCCCCCEEEEEEcCcchhhHHHHHHHHHHhccccCccccccccccCCCCCCC
Q 002525 694 GLLRAERENNSRGFPKILIDGPYGAPAQDYKKYDVVLLVGLGIGATPMISIVKDIINNMKSEDNNLESGLTVNNNNKNSS 773 (912)
Q Consensus 694 g~~~~~~~~~~~~~~~v~IdGPYG~~~~~~~~y~~vllVagGiGITP~lsiL~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 773 (912)
..+..+.|.||||.+..+.. ++.+||||||+||||++|+++++.+..
T Consensus 75 -----------~~G~~v~i~gP~G~~~~~~~-~~~~vlia~GtGiap~~~~l~~~~~~~--------------------- 121 (216)
T cd06198 75 -----------KPGTRVTVEGPYGRFTFDDR-RARQIWIAGGIGITPFLALLEALAARG--------------------- 121 (216)
T ss_pred -----------CCCCEEEEECCCCCCccccc-CceEEEEccccCHHHHHHHHHHHHhcC---------------------
Confidence 14678999999999754333 789999999999999999999987542
Q ss_pred CCcceEEEEEEeCCCCcHHHHHHHHHHHHhhcCCCcEEEEEeeccccCCCChhHHHHHHHhhhccccCCcccccCCcccc
Q 002525 774 FNTRKAYFYWVTREQGSFEWFKGIMNEVAEMDEKRVIELHNYCTSVYEEGDARSALIAMLQSLHHAKNGVDVVSGTRVKS 853 (912)
Q Consensus 774 ~~~~rv~l~W~~R~~~~~~wf~~~L~el~~~~~~~~i~i~iy~T~~~~~~d~~s~l~~~~q~l~~~~~~~d~~sg~~v~~ 853 (912)
..++++|+|++|+.+++ +|.+.|+++.+.. .+++++..++..
T Consensus 122 -~~~~v~l~~~~r~~~~~-~~~~~l~~l~~~~---~~~~~~~~~~~~--------------------------------- 163 (216)
T cd06198 122 -DARPVTLFYCVRDPEDA-VFLDELRALAAAA---GVVLHVIDSPSD--------------------------------- 163 (216)
T ss_pred -CCceEEEEEEECCHHHh-hhHHHHHHHHHhc---CeEEEEEeCCCC---------------------------------
Confidence 13689999999999986 7888888886643 466665433211
Q ss_pred ccCCCCHHHHHHHHHhhCCCCeEEEEEeCChHHHHHHHHHHHhhccCCCceEEEEeecC
Q 002525 854 HFAKPNWRQVYKRIALHHPDSRIGVFYCGAPALTKELRQLASDFSHKTSTKFEFHKENF 912 (912)
Q Consensus 854 ~~gRPd~~~vl~~~~~~~~~~~v~V~~CGP~~m~~~vr~~~~~~~~~~~~~~~fh~E~F 912 (912)
++.+...++.... .......||+|||++|++++++.+.+.. -..-.+|.|.|
T Consensus 164 --~~~~~~~~~~~~~--~~~~~~~vyicGp~~m~~~v~~~l~~~G---v~~~~I~~E~f 215 (216)
T cd06198 164 --GRLTLEQLVRALV--PDLADADVWFCGPPGMADALEKGLRALG---VPARRFHYERF 215 (216)
T ss_pred --cccchhhhhhhcC--CCcCCCeEEEECcHHHHHHHHHHHHHcC---CChHhcchhhc
Confidence 1111111111111 1123467999999999999999998753 33456788877
No 12
>cd06184 flavohem_like_fad_nad_binding FAD_NAD(P)H binding domain of flavohemoglobin. Flavohemoglobins have a globin domain containing a B-type heme fused with a ferredoxin reductase-like FAD/NAD-binding domain. Flavohemoglobins detoxify nitric oxide (NO) via an NO dioxygenase reaction. The hemoglobin domain adopts a globin fold with an embedded heme molecule. Flavohemoglobins also have a C-terminal reductase domain with bindiing sites for FAD and NAD(P)H. This domain catalyzes the conversion of NO + O2 + NAD(P)H to NO3- + NAD(P)+. Instead of the oxygen transport function of hemoglobins, flavohemoglobins seem to act in NO dioxygenation and NO signalling.
Probab=99.95 E-value=4.4e-26 Score=244.77 Aligned_cols=231 Identities=16% Similarity=0.277 Sum_probs=176.2
Q ss_pred ccceEEEEEEEecCCEEEEEEecCCC---ccccCccEEEEEeCCCC--CCcccceeeeecCCCCeEEEEEEec--CcchH
Q 002525 603 IEPVKILKVAVYPGNVLALHMSKPQG---FKYKSGQYMFVNCAAVS--PFEWHPFSITSSPGDDYLSVHIRTL--GDWTR 675 (912)
Q Consensus 603 ~~~~~i~~v~~~~~~v~~l~~~~p~~---~~~~pGQyv~l~~p~~s--~~e~HPFTIaS~p~~~~l~l~Ir~~--G~~T~ 675 (912)
++.++|.+++.+++++.+|++..+.. +.|+||||+.|.++..+ ...+|||||+|.|.++.+.|+||.. |..|+
T Consensus 6 ~~~~~v~~~~~~s~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~R~ySi~s~~~~~~l~~~ik~~~~G~~s~ 85 (247)
T cd06184 6 FRPFVVARKVAESEDITSFYLEPADGGPLPPFLPGQYLSVRVKLPGLGYRQIRQYSLSDAPNGDYYRISVKREPGGLVSN 85 (247)
T ss_pred cEEEEEEEEEEcCCCeEEEEEEeCCCCcCCCCCCCCEEEEEEecCCCCCceeEEeEeccCCCCCeEEEEEEEcCCCcchH
Confidence 45678899999999999999998753 68999999999997543 4689999999999878999999988 88999
Q ss_pred HHHHHHhhccCCCCCCCCccchhhhccCCCCCCeEEEeCCCCCCCCCCCCCCEEEEEEcCcchhhHHHHHHHHHHhcccc
Q 002525 676 QLKTVFSEVCQPAPAGKSGLLRAERENNSRGFPKILIDGPYGAPAQDYKKYDVVLLVGLGIGATPMISIVKDIINNMKSE 755 (912)
Q Consensus 676 ~L~~~~~~~~~~~~~g~sg~~~~~~~~~~~~~~~v~IdGPYG~~~~~~~~y~~vllVagGiGITP~lsiL~~l~~~~~~~ 755 (912)
.|.+.+ ..+.++.|.||||.+..+...++.++|||||+||||++++++++.++.
T Consensus 86 ~l~~~~-----------------------~~Gd~v~i~gP~G~~~~~~~~~~~llliagGtGiaP~~~~l~~~~~~~--- 139 (247)
T cd06184 86 YLHDNV-----------------------KVGDVLEVSAPAGDFVLDEASDRPLVLISAGVGITPMLSMLEALAAEG--- 139 (247)
T ss_pred HHHhcC-----------------------CCCCEEEEEcCCCceECCCCCCCcEEEEeccccHhHHHHHHHHHHhcC---
Confidence 887633 147789999999997654436778999999999999999999997641
Q ss_pred CccccccccccCCCCCCCCCcceEEEEEEeCCCCcHHHHHHHHHHHHhhcCCCcEEEEEeeccccCCCChhHHHHHHHhh
Q 002525 756 DNNLESGLTVNNNNKNSSFNTRKAYFYWVTREQGSFEWFKGIMNEVAEMDEKRVIELHNYCTSVYEEGDARSALIAMLQS 835 (912)
Q Consensus 756 ~~~~~~~~~~~~~~~~~~~~~~rv~l~W~~R~~~~~~wf~~~L~el~~~~~~~~i~i~iy~T~~~~~~d~~s~l~~~~q~ 835 (912)
..++++|+|++|+.+++ +|.++|+++++.. .+++++.++++..+....
T Consensus 140 -------------------~~~~i~l~~~~r~~~~~-~~~~~l~~l~~~~--~~~~~~~~~s~~~~~~~~---------- 187 (247)
T cd06184 140 -------------------PGRPVTFIHAARNSAVH-AFRDELEELAARL--PNLKLHVFYSEPEAGDRE---------- 187 (247)
T ss_pred -------------------CCCcEEEEEEcCchhhH-HHHHHHHHHHhhC--CCeEEEEEECCCCccccc----------
Confidence 14679999999999986 7899998887653 368888887754221000
Q ss_pred hccccCCcccccCCccccccCCCCHHHHHHHHHhhCCCCeEEEEEeCChHHHHHHHHHHHhhccCCCceEEEEeecC
Q 002525 836 LHHAKNGVDVVSGTRVKSHFAKPNWRQVYKRIALHHPDSRIGVFYCGAPALTKELRQLASDFSHKTSTKFEFHKENF 912 (912)
Q Consensus 836 l~~~~~~~d~~sg~~v~~~~gRPd~~~vl~~~~~~~~~~~v~V~~CGP~~m~~~vr~~~~~~~~~~~~~~~fh~E~F 912 (912)
....+.||++...+.+ .. +.....||+|||++|++++++.+.+..- ..-.+|.|.|
T Consensus 188 --------------~~~~~~g~~~~~~l~~-~~---~~~~~~v~icGp~~m~~~v~~~l~~~G~---~~~~i~~e~f 243 (247)
T cd06184 188 --------------EDYDHAGRIDLALLRE-LL---LPADADFYLCGPVPFMQAVREGLKALGV---PAERIHYEVF 243 (247)
T ss_pred --------------ccccccCccCHHHHhh-cc---CCCCCEEEEECCHHHHHHHHHHHHHcCC---CHHHeeeecc
Confidence 0012346766543332 11 1234689999999999999999887533 3446777877
No 13
>cd06191 FNR_iron_sulfur_binding Iron-sulfur binding Ferredoxin Reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with a C-terminal iron-sulfur binding cluster domain. FNR was intially identified as a chloroplast reductase activity catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methnae assimilation in a variety of organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in
Probab=99.94 E-value=8.7e-26 Score=240.04 Aligned_cols=226 Identities=15% Similarity=0.233 Sum_probs=167.3
Q ss_pred EEEEEEEecCCEEEEEEecCCC--ccccCccEEEEEeCCCCCCcccceeeeecCCCCeEEEEEEec--CcchHHHHHHHh
Q 002525 607 KILKVAVYPGNVLALHMSKPQG--FKYKSGQYMFVNCAAVSPFEWHPFSITSSPGDDYLSVHIRTL--GDWTRQLKTVFS 682 (912)
Q Consensus 607 ~i~~v~~~~~~v~~l~~~~p~~--~~~~pGQyv~l~~p~~s~~e~HPFTIaS~p~~~~l~l~Ir~~--G~~T~~L~~~~~ 682 (912)
+|++++.+++++.++++..|.. +.|+||||+.|.++..+...+|||||+|.|.++.++|+||.. |.+|..|.+.+
T Consensus 2 ~v~~i~~~t~~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~~~~l~~~v~~~~~G~~s~~l~~~~- 80 (231)
T cd06191 2 RVAEVRSETPDAVTIVFAVPGPLQYGFRPGQHVTLKLDFDGEELRRCYSLCSSPAPDEISITVKRVPGGRVSNYLREHI- 80 (231)
T ss_pred EEEEEEecCCCcEEEEEeCCCCCCCCCCCCCeEEEEEecCCeEEeeeeeccCCCCCCeEEEEEEECCCCccchHHHhcC-
Confidence 5788888999999999997654 689999999999976555678999999998878899999998 77899887533
Q ss_pred hccCCCCCCCCccchhhhccCCCCCCeEEEeCCCCCCCCCCCCCCEEEEEEcCcchhhHHHHHHHHHHhccccCcccccc
Q 002525 683 EVCQPAPAGKSGLLRAERENNSRGFPKILIDGPYGAPAQDYKKYDVVLLVGLGIGATPMISIVKDIINNMKSEDNNLESG 762 (912)
Q Consensus 683 ~~~~~~~~g~sg~~~~~~~~~~~~~~~v~IdGPYG~~~~~~~~y~~vllVagGiGITP~lsiL~~l~~~~~~~~~~~~~~ 762 (912)
..+..+.|.||||.+..+....+.+||||||+||||++|+++++....
T Consensus 81 ----------------------~~Gd~v~i~gP~G~f~l~~~~~~~~lliagG~Gitp~~s~~~~~~~~~---------- 128 (231)
T cd06191 81 ----------------------QPGMTVEVMGPQGHFVYQPQPPGRYLLVAAGSGITPLMAMIRATLQTA---------- 128 (231)
T ss_pred ----------------------CCCCEEEEeCCccceEeCCCCCCcEEEEecCccHhHHHHHHHHHHhcC----------
Confidence 246789999999987544345678999999999999999999987541
Q ss_pred ccccCCCCCCCCCcceEEEEEEeCCCCcHHHHHHHHHHHHhhcCCCcEEEEEeeccccCCCChhHHHHHHHhhhccccCC
Q 002525 763 LTVNNNNKNSSFNTRKAYFYWVTREQGSFEWFKGIMNEVAEMDEKRVIELHNYCTSVYEEGDARSALIAMLQSLHHAKNG 842 (912)
Q Consensus 763 ~~~~~~~~~~~~~~~rv~l~W~~R~~~~~~wf~~~L~el~~~~~~~~i~i~iy~T~~~~~~d~~s~l~~~~q~l~~~~~~ 842 (912)
..++++|+|++|+.+++ +|.++|+++++.. .+++++.++|+..+..+.
T Consensus 129 ------------~~~~v~l~~~~r~~~~~-~~~~el~~l~~~~--~~~~~~~~~s~~~~~~~~----------------- 176 (231)
T cd06191 129 ------------PESDFTLIHSARTPADM-IFAQELRELADKP--QRLRLLCIFTRETLDSDL----------------- 176 (231)
T ss_pred ------------CCCCEEEEEecCCHHHH-hHHHHHHHHHHhC--CCeEEEEEECCCCCCccc-----------------
Confidence 13679999999999997 6888888887643 358888777754211110
Q ss_pred cccccCCccccccCCCCHHHHHHHHHhhCCCCeEEEEEeCChHHHHHHHHHHHhhccCCCceEEEEeecC
Q 002525 843 VDVVSGTRVKSHFAKPNWRQVYKRIALHHPDSRIGVFYCGAPALTKELRQLASDFSHKTSTKFEFHKENF 912 (912)
Q Consensus 843 ~d~~sg~~v~~~~gRPd~~~vl~~~~~~~~~~~v~V~~CGP~~m~~~vr~~~~~~~~~~~~~~~fh~E~F 912 (912)
.+. .++- -.++...+... .....||+|||++|++++++.+.+.. -.+-.+|.|.|
T Consensus 177 ----~~~-----~~~~-~~~l~~~~~~~--~~~~~vyicGp~~mv~~~~~~l~~~G---~~~~~i~~E~f 231 (231)
T cd06191 177 ----LHG-----RIDG-EQSLGAALIPD--RLEREAFICGPAGMMDAVETALKELG---MPPERIHTERF 231 (231)
T ss_pred ----cCC-----cccc-cHHHHHHhCcc--ccCCeEEEECCHHHHHHHHHHHHHcC---CCHHHeeeccC
Confidence 000 0111 12232222111 12347999999999999999987653 33456788887
No 14
>cd06212 monooxygenase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. These flavoprotein monooxygenases use molecular oxygen as a substrate and require reduced FAD. One atom of oxygen is incorportated into the aromatic compond, while the other is used to form a molecule of water. In contrast dioxygenases add both atoms of oxygen to the substrate.
Probab=99.94 E-value=1.2e-25 Score=239.14 Aligned_cols=225 Identities=17% Similarity=0.305 Sum_probs=167.1
Q ss_pred ceEEEEEEEecCCEEEEEEecCC--CccccCccEEEEEeCCCCCCcccceeeeecCCC-CeEEEEEEec--CcchHHHHH
Q 002525 605 PVKILKVAVYPGNVLALHMSKPQ--GFKYKSGQYMFVNCAAVSPFEWHPFSITSSPGD-DYLSVHIRTL--GDWTRQLKT 679 (912)
Q Consensus 605 ~~~i~~v~~~~~~v~~l~~~~p~--~~~~~pGQyv~l~~p~~s~~e~HPFTIaS~p~~-~~l~l~Ir~~--G~~T~~L~~ 679 (912)
.++|.+++.+++++.++++..+. .+.|+||||+.|++|... ++|||||+|.|.+ +.+.|+||.. |.+|..|.+
T Consensus 2 ~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~~~--~~r~ySi~s~~~~~~~l~l~vk~~~~G~~s~~l~~ 79 (232)
T cd06212 2 VGTVVAVEALTHDIRRLRLRLEEPEPIKFFAGQYVDITVPGTE--ETRSFSMANTPADPGRLEFIIKKYPGGLFSSFLDD 79 (232)
T ss_pred ceEEEEEeecCCCeEEEEEEcCCCCcCCcCCCCeEEEEcCCCC--cccccccCCCCCCCCEEEEEEEECCCCchhhHHhh
Confidence 46788999999999999998644 578999999999998643 7899999999975 7899999997 678888875
Q ss_pred HHhhccCCCCCCCCccchhhhccCCCCCCeEEEeCCCCCCCCCCCCCCEEEEEEcCcchhhHHHHHHHHHHhccccCccc
Q 002525 680 VFSEVCQPAPAGKSGLLRAERENNSRGFPKILIDGPYGAPAQDYKKYDVVLLVGLGIGATPMISIVKDIINNMKSEDNNL 759 (912)
Q Consensus 680 ~~~~~~~~~~~g~sg~~~~~~~~~~~~~~~v~IdGPYG~~~~~~~~y~~vllVagGiGITP~lsiL~~l~~~~~~~~~~~ 759 (912)
.+ ..+.++.|.||||.+......++.+|+||||+||||++|+++++....
T Consensus 80 ~l-----------------------~~G~~v~i~gP~G~~~~~~~~~~~~l~iagG~Giap~~~~l~~~~~~~------- 129 (232)
T cd06212 80 GL-----------------------AVGDPVTVTGPYGTCTLRESRDRPIVLIGGGSGMAPLLSLLRDMAASG------- 129 (232)
T ss_pred cC-----------------------CCCCEEEEEcCcccceecCCCCCcEEEEecCcchhHHHHHHHHHHhcC-------
Confidence 33 146789999999998654345779999999999999999999987641
Q ss_pred cccccccCCCCCCCCCcceEEEEEEeCCCCcHHHHHHHHHHHHhhcCCCcEEEEEeeccccCCCChhHHHHHHHhhhccc
Q 002525 760 ESGLTVNNNNKNSSFNTRKAYFYWVTREQGSFEWFKGIMNEVAEMDEKRVIELHNYCTSVYEEGDARSALIAMLQSLHHA 839 (912)
Q Consensus 760 ~~~~~~~~~~~~~~~~~~rv~l~W~~R~~~~~~wf~~~L~el~~~~~~~~i~i~iy~T~~~~~~d~~s~l~~~~q~l~~~ 839 (912)
..++++|+|++|+.+++ ++.++++++++.. .+++++..+++...+..
T Consensus 130 ---------------~~~~v~l~~~~r~~~~~-~~~~~l~~l~~~~--~~~~~~~~~s~~~~~~~--------------- 176 (232)
T cd06212 130 ---------------SDRPVRFFYGARTARDL-FYLEEIAALGEKI--PDFTFIPALSESPDDEG--------------- 176 (232)
T ss_pred ---------------CCCcEEEEEeccchHHh-ccHHHHHHHHHhC--CCEEEEEEECCCCCCCC---------------
Confidence 13579999999999987 5778888887643 35766666664321100
Q ss_pred cCCcccccCCccccccCCCCHHHHHHHHHhhCCCCeEEEEEeCChHHHHHHHHHHHhhccCCCceEEEEeecC
Q 002525 840 KNGVDVVSGTRVKSHFAKPNWRQVYKRIALHHPDSRIGVFYCGAPALTKELRQLASDFSHKTSTKFEFHKENF 912 (912)
Q Consensus 840 ~~~~d~~sg~~v~~~~gRPd~~~vl~~~~~~~~~~~v~V~~CGP~~m~~~vr~~~~~~~~~~~~~~~fh~E~F 912 (912)
..+ ..| .+.+.+.+..... ....||+|||++|++.+.+.+.+.. ...-.+|.|.|
T Consensus 177 ------~~~-----~~g--~~~~~~~~~~~~~--~~~~v~~CGp~~~~~~v~~~l~~~G---~~~~~i~~e~f 231 (232)
T cd06212 177 ------WSG-----ETG--LVTEVVQRNEATL--AGCDVYLCGPPPMIDAALPVLEMSG---VPPDQIFYDKF 231 (232)
T ss_pred ------CcC-----Ccc--cHHHHHHhhccCc--cCCEEEEECCHHHHHHHHHHHHHcC---CCHHHeeeccc
Confidence 000 012 2233343332211 2356999999999999999988753 33456888877
No 15
>cd06213 oxygenase_e_transfer_subunit The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate while mono-oxygenases add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=99.94 E-value=1.2e-25 Score=238.42 Aligned_cols=222 Identities=16% Similarity=0.241 Sum_probs=167.1
Q ss_pred ceEEEEEEEecCCEEEEEEecCCCccccCccEEEEEeCCCCCCcccceeeeecCCC-CeEEEEEEec--CcchHHHHHHH
Q 002525 605 PVKILKVAVYPGNVLALHMSKPQGFKYKSGQYMFVNCAAVSPFEWHPFSITSSPGD-DYLSVHIRTL--GDWTRQLKTVF 681 (912)
Q Consensus 605 ~~~i~~v~~~~~~v~~l~~~~p~~~~~~pGQyv~l~~p~~s~~e~HPFTIaS~p~~-~~l~l~Ir~~--G~~T~~L~~~~ 681 (912)
..+|.+++.+++++.++++..+..+.|+||||+.|++|... .+|||||+|+|.+ +.++|+||.. |.+|+.|.+.+
T Consensus 2 ~~~v~~~~~~t~~~~~~~l~~~~~~~~~pGQ~~~l~~~~~~--~~r~ysi~s~~~~~~~l~~~vk~~~~G~~s~~l~~~l 79 (227)
T cd06213 2 RGTIVAQERLTHDIVRLTVQLDRPIAYKAGQYAELTLPGLP--AARSYSFANAPQGDGQLSFHIRKVPGGAFSGWLFGAD 79 (227)
T ss_pred eEEEEEEeecCCCEEEEEEecCCCCCcCCCCEEEEEeCCCC--cccccccCCCCCCCCEEEEEEEECCCCcchHHHHhcC
Confidence 35788889999999999999887788999999999998653 6899999999874 7899999987 88999886644
Q ss_pred hhccCCCCCCCCccchhhhccCCCCCCeEEEeCCCCCCCCCCCCCCEEEEEEcCcchhhHHHHHHHHHHhccccCccccc
Q 002525 682 SEVCQPAPAGKSGLLRAERENNSRGFPKILIDGPYGAPAQDYKKYDVVLLVGLGIGATPMISIVKDIINNMKSEDNNLES 761 (912)
Q Consensus 682 ~~~~~~~~~g~sg~~~~~~~~~~~~~~~v~IdGPYG~~~~~~~~y~~vllVagGiGITP~lsiL~~l~~~~~~~~~~~~~ 761 (912)
+.+..+.|.||||.+..+ ...+.+|||||||||||++++++++.++.
T Consensus 80 -----------------------~~G~~v~i~gP~G~~~~~-~~~~~~lliagG~GiaP~~~~~~~~~~~~--------- 126 (227)
T cd06213 80 -----------------------RTGERLTVRGPFGDFWLR-PGDAPILCIAGGSGLAPILAILEQARAAG--------- 126 (227)
T ss_pred -----------------------CCCCEEEEeCCCcceEeC-CCCCcEEEEecccchhHHHHHHHHHHhcC---------
Confidence 246789999999998643 24578999999999999999999987542
Q ss_pred cccccCCCCCCCCCcceEEEEEEeCCCCcHHHHHHHHHHHHhhcCCCcEEEEEeeccccCCCChhHHHHHHHhhhccccC
Q 002525 762 GLTVNNNNKNSSFNTRKAYFYWVTREQGSFEWFKGIMNEVAEMDEKRVIELHNYCTSVYEEGDARSALIAMLQSLHHAKN 841 (912)
Q Consensus 762 ~~~~~~~~~~~~~~~~rv~l~W~~R~~~~~~wf~~~L~el~~~~~~~~i~i~iy~T~~~~~~d~~s~l~~~~q~l~~~~~ 841 (912)
..++++++|++|+.+++ ++.+.+.++++... ..++++.++++..+..+.
T Consensus 127 -------------~~~~i~l~~~~r~~~~~-~~~~~l~~l~~~~~-~~~~~~~~~s~~~~~~~~---------------- 175 (227)
T cd06213 127 -------------TKRDVTLLFGARTQRDL-YALDEIAAIAARWR-GRFRFIPVLSEEPADSSW---------------- 175 (227)
T ss_pred -------------CCCcEEEEEeeCCHHHh-ccHHHHHHHHHhcc-CCeEEEEEecCCCCCCCc----------------
Confidence 13679999999999987 78888888875432 357777766643111000
Q ss_pred CcccccCCccccccCCC-CHHHHHHHHHhhCCCCeEEEEEeCChHHHHHHHHHHHhhccCCCceEEEEeecC
Q 002525 842 GVDVVSGTRVKSHFAKP-NWRQVYKRIALHHPDSRIGVFYCGAPALTKELRQLASDFSHKTSTKFEFHKENF 912 (912)
Q Consensus 842 ~~d~~sg~~v~~~~gRP-d~~~vl~~~~~~~~~~~v~V~~CGP~~m~~~vr~~~~~~~~~~~~~~~fh~E~F 912 (912)
.|++ .+.+.+.+.. .....||+|||++|++++++.+.+..- .+-.+|.|.|
T Consensus 176 -------------~g~~g~v~~~l~~~~----~~~~~v~~CGp~~~~~~~~~~l~~~G~---~~~~i~~e~f 227 (227)
T cd06213 176 -------------KGARGLVTEHIAEVL----LAATEAYLCGPPAMIDAAIAVLRALGI---AREHIHADRF 227 (227)
T ss_pred -------------cCCcccHHHHHHhhc----cCCCEEEEECCHHHHHHHHHHHHHcCC---CHHHEeccCC
Confidence 1121 2333333332 123479999999999999998887532 3445777877
No 16
>cd06215 FNR_iron_sulfur_binding_1 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal portion of the FAD/NAD binding domain contains most of the NADP(H) binding residues and the N-terminal sub-domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. In this ferredoxin like sub-group, the FAD/NAD sub-domains is typically fused to a C-terminal iron-sulfur binding domain. Iron-sulfur pr
Probab=99.94 E-value=9.6e-26 Score=239.51 Aligned_cols=226 Identities=20% Similarity=0.335 Sum_probs=171.4
Q ss_pred eEEEEEEEecCCEEEEEEecCCC--ccccCccEEEEEeCCCCCCcccceeeeecCCCC-eEEEEEEec--CcchHHHHHH
Q 002525 606 VKILKVAVYPGNVLALHMSKPQG--FKYKSGQYMFVNCAAVSPFEWHPFSITSSPGDD-YLSVHIRTL--GDWTRQLKTV 680 (912)
Q Consensus 606 ~~i~~v~~~~~~v~~l~~~~p~~--~~~~pGQyv~l~~p~~s~~e~HPFTIaS~p~~~-~l~l~Ir~~--G~~T~~L~~~ 680 (912)
++|+++..+++++.+++++.|.. +.|+||||++|++|..+...+|||||+|.|.++ .+.|+||.. |.+|+.|.+.
T Consensus 1 ~~v~~~~~~t~~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~~~~~~~R~ySi~s~~~~~~~l~~~vk~~~~G~~s~~l~~~ 80 (231)
T cd06215 1 LRCVKIIQETPDVKTFRFAAPDGSLFAYKPGQFLTLELEIDGETVYRAYTLSSSPSRPDSLSITVKRVPGGLVSNWLHDN 80 (231)
T ss_pred CeEEEEEEcCCCeEEEEEECCCCCcCCcCCCCeEEEEEecCCCeEEEeeecccCCCCCCcEEEEEEEcCCCcchHHHHhc
Confidence 36788889999999999999876 789999999999987666678999999998754 599999998 8899888653
Q ss_pred HhhccCCCCCCCCccchhhhccCCCCCCeEEEeCCCCCCCCCCCCCCEEEEEEcCcchhhHHHHHHHHHHhccccCcccc
Q 002525 681 FSEVCQPAPAGKSGLLRAERENNSRGFPKILIDGPYGAPAQDYKKYDVVLLVGLGIGATPMISIVKDIINNMKSEDNNLE 760 (912)
Q Consensus 681 ~~~~~~~~~~g~sg~~~~~~~~~~~~~~~v~IdGPYG~~~~~~~~y~~vllVagGiGITP~lsiL~~l~~~~~~~~~~~~ 760 (912)
+ ..+..+.|.||||.+.......+.+||||||+||||++++++++....
T Consensus 81 ~-----------------------~~G~~v~i~gP~G~f~~~~~~~~~~vlIagG~Giap~~~~l~~~~~~~-------- 129 (231)
T cd06215 81 L-----------------------KVGDELWASGPAGEFTLIDHPADKLLLLSAGSGITPMMSMARWLLDTR-------- 129 (231)
T ss_pred C-----------------------CCCCEEEEEcCcceeEeCCCCCCcEEEEecCcCcchHHHHHHHHHhcC--------
Confidence 3 146789999999997543334678999999999999999999987541
Q ss_pred ccccccCCCCCCCCCcceEEEEEEeCCCCcHHHHHHHHHHHHhhcCCCcEEEEEeeccccCCCChhHHHHHHHhhhcccc
Q 002525 761 SGLTVNNNNKNSSFNTRKAYFYWVTREQGSFEWFKGIMNEVAEMDEKRVIELHNYCTSVYEEGDARSALIAMLQSLHHAK 840 (912)
Q Consensus 761 ~~~~~~~~~~~~~~~~~rv~l~W~~R~~~~~~wf~~~L~el~~~~~~~~i~i~iy~T~~~~~~d~~s~l~~~~q~l~~~~ 840 (912)
..++++|+|++|+.+++ .+.+.|+++++.. ..++++.++|+..+. .
T Consensus 130 --------------~~~~v~l~~~~r~~~~~-~~~~~l~~l~~~~--~~~~~~~~~~~~~~~-~---------------- 175 (231)
T cd06215 130 --------------PDADIVFIHSARSPADI-IFADELEELARRH--PNFRLHLILEQPAPG-A---------------- 175 (231)
T ss_pred --------------CCCcEEEEEecCChhhh-hHHHHHHHHHHHC--CCeEEEEEEccCCCC-c----------------
Confidence 13679999999999987 5788888887653 358888877753210 0
Q ss_pred CCcccccCCccccccCCCCHHHHHHHHHhhCCCCeEEEEEeCChHHHHHHHHHHHhhccCCCceEEEEeecC
Q 002525 841 NGVDVVSGTRVKSHFAKPNWRQVYKRIALHHPDSRIGVFYCGAPALTKELRQLASDFSHKTSTKFEFHKENF 912 (912)
Q Consensus 841 ~~~d~~sg~~v~~~~gRPd~~~vl~~~~~~~~~~~v~V~~CGP~~m~~~vr~~~~~~~~~~~~~~~fh~E~F 912 (912)
...+.||.+.. ++++..... ....||+|||++|++.+++.+.+.. -..-.+|.|.|
T Consensus 176 ----------~~~~~g~~~~~-~l~~~~~~~--~~~~v~icGp~~m~~~~~~~l~~~g---v~~~~i~~e~f 231 (231)
T cd06215 176 ----------WGGYRGRLNAE-LLALLVPDL--KERTVFVCGPAGFMKAVKSLLAELG---FPMSRFHQESF 231 (231)
T ss_pred ----------ccccCCcCCHH-HHHHhcCCc--cCCeEEEECCHHHHHHHHHHHHHcC---CCHHHeeeecC
Confidence 00123565532 344332221 2347999999999999999998753 33456788887
No 17
>cd06217 FNR_iron_sulfur_binding_3 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form
Probab=99.94 E-value=1.4e-25 Score=238.96 Aligned_cols=229 Identities=15% Similarity=0.222 Sum_probs=171.0
Q ss_pred ccceEEEEEEEecCCEEEEEEecCCC--ccccCccEEEEEeCCC-CCCcccceeeeecCCC-CeEEEEEEec--CcchHH
Q 002525 603 IEPVKILKVAVYPGNVLALHMSKPQG--FKYKSGQYMFVNCAAV-SPFEWHPFSITSSPGD-DYLSVHIRTL--GDWTRQ 676 (912)
Q Consensus 603 ~~~~~i~~v~~~~~~v~~l~~~~p~~--~~~~pGQyv~l~~p~~-s~~e~HPFTIaS~p~~-~~l~l~Ir~~--G~~T~~ 676 (912)
|+.++|++++.+++++.+++|+.|.. +.|+||||++|++|.. +...+|||||+|.|.+ +.+.|+||.. |..|..
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~r~ySi~s~~~~~~~l~l~v~~~~~G~~s~~ 80 (235)
T cd06217 1 WRVLRVTEIIQETPTVKTFRLAVPDGVPPPFLAGQHVDLRLTAIDGYTAQRSYSIASSPTQRGRVELTVKRVPGGEVSPY 80 (235)
T ss_pred CceEEEEEEEecCCCeEEEEEECCCCCcCCcCCcCeEEEEEecCCCceeeeeecccCCCCCCCeEEEEEEEcCCCcchHH
Confidence 46788999999999999999998876 7899999999999843 3456799999999865 5899999987 568888
Q ss_pred HHHHHhhccCCCCCCCCccchhhhccCCCCCCeEEEeCCCCCCCCCCCCCCEEEEEEcCcchhhHHHHHHHHHHhccccC
Q 002525 677 LKTVFSEVCQPAPAGKSGLLRAERENNSRGFPKILIDGPYGAPAQDYKKYDVVLLVGLGIGATPMISIVKDIINNMKSED 756 (912)
Q Consensus 677 L~~~~~~~~~~~~~g~sg~~~~~~~~~~~~~~~v~IdGPYG~~~~~~~~y~~vllVagGiGITP~lsiL~~l~~~~~~~~ 756 (912)
|.+.+ ..+..+.|.||||.+..+....+.++|||||+||||+++++++++++.
T Consensus 81 l~~~l-----------------------~~Gd~v~i~gP~G~~~~~~~~~~~~vliagG~Giap~~~~~~~~~~~~---- 133 (235)
T cd06217 81 LHDEV-----------------------KVGDLLEVRGPIGTFTWNPLHGDPVVLLAGGSGIVPLMSMIRYRRDLG---- 133 (235)
T ss_pred HHhcC-----------------------CCCCEEEEeCCceeeEeCCCCCceEEEEecCcCccHHHHHHHHHHhcC----
Confidence 76533 146789999999997543334678999999999999999999987641
Q ss_pred ccccccccccCCCCCCCCCcceEEEEEEeCCCCcHHHHHHHHHHHHhhcCCCcEEEEEeeccccCCCChhHHHHHHHhhh
Q 002525 757 NNLESGLTVNNNNKNSSFNTRKAYFYWVTREQGSFEWFKGIMNEVAEMDEKRVIELHNYCTSVYEEGDARSALIAMLQSL 836 (912)
Q Consensus 757 ~~~~~~~~~~~~~~~~~~~~~rv~l~W~~R~~~~~~wf~~~L~el~~~~~~~~i~i~iy~T~~~~~~d~~s~l~~~~q~l 836 (912)
..++++++|++|+.+++ ++.++|.++++.. ..++++.++|+... +.
T Consensus 134 ------------------~~~~i~l~~~~r~~~~~-~~~~el~~~~~~~--~~~~~~~~~s~~~~--~~----------- 179 (235)
T cd06217 134 ------------------WPVPFRLLYSARTAEDV-IFRDELEQLARRH--PNLHVTEALTRAAP--AD----------- 179 (235)
T ss_pred ------------------CCceEEEEEecCCHHHh-hHHHHHHHHHHHC--CCeEEEEEeCCCCC--CC-----------
Confidence 13679999999999986 6888888887643 24777777765311 10
Q ss_pred ccccCCcccccCCccccccCCCCHHHHHHHHHhhCCCCeEEEEEeCChHHHHHHHHHHHhhccCCCceEEEEeecC
Q 002525 837 HHAKNGVDVVSGTRVKSHFAKPNWRQVYKRIALHHPDSRIGVFYCGAPALTKELRQLASDFSHKTSTKFEFHKENF 912 (912)
Q Consensus 837 ~~~~~~~d~~sg~~v~~~~gRPd~~~vl~~~~~~~~~~~v~V~~CGP~~m~~~vr~~~~~~~~~~~~~~~fh~E~F 912 (912)
.. -+.||.+-. ++.+.... .....||+|||++|++++++.+.+..- ..-.+|.|.|
T Consensus 180 ---------~~-----~~~g~~~~~-~l~~~~~~--~~~~~v~icGp~~m~~~v~~~l~~~Gv---~~~~i~~E~f 235 (235)
T cd06217 180 ---------WL-----GPAGRITAD-LIAELVPP--LAGRRVYVCGPPAFVEAATRLLLELGV---PRDRIRTEAF 235 (235)
T ss_pred ---------cC-----CcCcEeCHH-HHHhhCCC--ccCCEEEEECCHHHHHHHHHHHHHcCC---CHHHEeeccC
Confidence 00 123555532 23333111 123579999999999999999987533 2345777877
No 18
>PRK08051 fre FMN reductase; Validated
Probab=99.94 E-value=8.4e-26 Score=240.37 Aligned_cols=223 Identities=18% Similarity=0.250 Sum_probs=163.5
Q ss_pred cceEEEEEEEecCCEEEEEEecCCCccccCccEEEEEeCCCCCCcccceeeeecC-CCCeEEEEEEecCc--chHHHHHH
Q 002525 604 EPVKILKVAVYPGNVLALHMSKPQGFKYKSGQYMFVNCAAVSPFEWHPFSITSSP-GDDYLSVHIRTLGD--WTRQLKTV 680 (912)
Q Consensus 604 ~~~~i~~v~~~~~~v~~l~~~~p~~~~~~pGQyv~l~~p~~s~~e~HPFTIaS~p-~~~~l~l~Ir~~G~--~T~~L~~~ 680 (912)
..++|.++..+++++.+|++..+..+.|+||||++|+++.. +.|||||+|.| +++.++|+||..++ .+..+...
T Consensus 3 ~~~~v~~i~~~~~~~~~l~l~~~~~~~~~pGQ~v~l~~~~~---~~r~ySias~p~~~~~l~~~v~~~~~~~~~~~~~~~ 79 (232)
T PRK08051 3 LSCKVTSVEAITDTVYRVRLVPEAPFSFRAGQYLMVVMGEK---DKRPFSIASTPREKGFIELHIGASELNLYAMAVMER 79 (232)
T ss_pred eEEEEEEEecCCCCeEEEEEecCCCCccCCCCEEEEEcCCC---cceeecccCCCCCCCcEEEEEEEcCCCcchHHHHHH
Confidence 35788899999999999999987788999999999999763 67999999999 47789999999754 55555433
Q ss_pred HhhccCCCCCCCCccchhhhccCCCCCCeEEEeCCCCCCCCCCCCCCEEEEEEcCcchhhHHHHHHHHHHhccccCcccc
Q 002525 681 FSEVCQPAPAGKSGLLRAERENNSRGFPKILIDGPYGAPAQDYKKYDVVLLVGLGIGATPMISIVKDIINNMKSEDNNLE 760 (912)
Q Consensus 681 ~~~~~~~~~~g~sg~~~~~~~~~~~~~~~v~IdGPYG~~~~~~~~y~~vllVagGiGITP~lsiL~~l~~~~~~~~~~~~ 760 (912)
+ ..+..|.|+||||.+..+....+.+||||||+||||++|++++++...
T Consensus 80 l-----------------------~~G~~v~v~gP~G~~~~~~~~~~~~vliagG~GiaP~~~~l~~~~~~~-------- 128 (232)
T PRK08051 80 I-----------------------LKDGEIEVDIPHGDAWLREESERPLLLIAGGTGFSYARSILLTALAQG-------- 128 (232)
T ss_pred c-----------------------CCCCEEEEEcCCCceEccCCCCCcEEEEecCcCcchHHHHHHHHHHhC--------
Confidence 3 257799999999998644344578999999999999999999997641
Q ss_pred ccccccCCCCCCCCCcceEEEEEEeCCCCcHHHHHHHHHHHHhhcCCCcEEEEEeeccccCCCChhHHHHHHHhhhcccc
Q 002525 761 SGLTVNNNNKNSSFNTRKAYFYWVTREQGSFEWFKGIMNEVAEMDEKRVIELHNYCTSVYEEGDARSALIAMLQSLHHAK 840 (912)
Q Consensus 761 ~~~~~~~~~~~~~~~~~rv~l~W~~R~~~~~~wf~~~L~el~~~~~~~~i~i~iy~T~~~~~~d~~s~l~~~~q~l~~~~ 840 (912)
..++++|+|++|+.+++ +|.++|.++++... +++++..+++..+ +.
T Consensus 129 --------------~~~~v~l~~g~r~~~~~-~~~~el~~l~~~~~--~~~~~~~~~~~~~--~~--------------- 174 (232)
T PRK08051 129 --------------PNRPITLYWGGREEDHL-YDLDELEALALKHP--NLHFVPVVEQPEE--GW--------------- 174 (232)
T ss_pred --------------CCCcEEEEEEeccHHHh-hhhHHHHHHHHHCC--CcEEEEEeCCCCC--Cc---------------
Confidence 13679999999999997 89999988877543 4666665543211 00
Q ss_pred CCcccccCCccccccCCCCHHHHHHHHHhhCCCCeEEEEEeCChHHHHHHHHHH-HhhccCCCceEEEEeecC
Q 002525 841 NGVDVVSGTRVKSHFAKPNWRQVYKRIALHHPDSRIGVFYCGAPALTKELRQLA-SDFSHKTSTKFEFHKENF 912 (912)
Q Consensus 841 ~~~d~~sg~~v~~~~gRPd~~~vl~~~~~~~~~~~v~V~~CGP~~m~~~vr~~~-~~~~~~~~~~~~fh~E~F 912 (912)
.| ..|+.. +.+++.... .....||+|||++|++++++.+ .+.. -..-.+|.|.|
T Consensus 175 ------~~-----~~g~v~-~~l~~~~~~---~~~~~vyicGp~~m~~~v~~~l~~~~G---~~~~~i~~e~f 229 (232)
T PRK08051 175 ------QG-----KTGTVL-TAVMQDFGS---LAEYDIYIAGRFEMAKIARELFCRERG---AREEHLFGDAF 229 (232)
T ss_pred ------cc-----ceeeeh-HHHHhhccC---cccCEEEEECCHHHHHHHHHHHHHHcC---CCHHHeecccc
Confidence 00 012221 222222211 1234699999999999999988 6643 23445777776
No 19
>cd06210 MMO_FAD_NAD_binding Methane monooxygenase (MMO) reductase of methanotrophs catalyzes the NADH-dependent hydroxylation of methane to methanol. This multicomponent enzyme mediates electron transfer via a hydroxylase (MMOH), a coupling protein, and a reductase which is comprised of an N-terminal [2Fe-2S] ferredoxin domain, an FAD binding subdomain, and an NADH binding subdomain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. Dioxygenases add both atom of oxygen to the substrate, while mono-oxygenases add one atom to the substrate and one atom to water.
Probab=99.94 E-value=1.7e-25 Score=238.59 Aligned_cols=225 Identities=16% Similarity=0.270 Sum_probs=167.2
Q ss_pred cceEEEEEEEecCCEEEEEEecCCC------ccccCccEEEEEeCCCCCCcccceeeeecCC-CCeEEEEEEec--Ccch
Q 002525 604 EPVKILKVAVYPGNVLALHMSKPQG------FKYKSGQYMFVNCAAVSPFEWHPFSITSSPG-DDYLSVHIRTL--GDWT 674 (912)
Q Consensus 604 ~~~~i~~v~~~~~~v~~l~~~~p~~------~~~~pGQyv~l~~p~~s~~e~HPFTIaS~p~-~~~l~l~Ir~~--G~~T 674 (912)
..++|++++.+++++++++++.|.+ +.|+||||+.|.+|.. .++|||||+|.|. ++.+.|+||.. |.+|
T Consensus 2 ~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~pGQ~v~l~~~~~--~~~R~ySi~s~~~~~~~l~~~i~~~~~G~~s 79 (236)
T cd06210 2 REAEIVAVDRVSSNVVRLRLQPDDAEGAGIAAEFVPGQFVEIEIPGT--DTRRSYSLANTPNWDGRLEFLIRLLPGGAFS 79 (236)
T ss_pred ceEEEEEEeecCCceEEEEEEeCCcccccccCCcCCCCEEEEEcCCC--ccceecccCCCCCCCCEEEEEEEEcCCCccc
Confidence 3578899999999999999998765 7899999999999853 4689999999987 67899999987 7788
Q ss_pred HHHHHHHhhccCCCCCCCCccchhhhccCCCCCCeEEEeCCCCCCCCCCCCCCEEEEEEcCcchhhHHHHHHHHHHhccc
Q 002525 675 RQLKTVFSEVCQPAPAGKSGLLRAERENNSRGFPKILIDGPYGAPAQDYKKYDVVLLVGLGIGATPMISIVKDIINNMKS 754 (912)
Q Consensus 675 ~~L~~~~~~~~~~~~~g~sg~~~~~~~~~~~~~~~v~IdGPYG~~~~~~~~y~~vllVagGiGITP~lsiL~~l~~~~~~ 754 (912)
..|.+.+ ..+..+.|.||||.+..+...++.++|||||+||||++++++++....
T Consensus 80 ~~l~~~~-----------------------~~Gd~v~i~gP~G~f~l~~~~~~~~vliagGtGiaP~~~~l~~~~~~~-- 134 (236)
T cd06210 80 TYLETRA-----------------------KVGQRLNLRGPLGAFGLRENGLRPRWFVAGGTGLAPLLSMLRRMAEWG-- 134 (236)
T ss_pred hhhhhCc-----------------------CCCCEEEEecCcceeeecCCCCccEEEEccCcchhHHHHHHHHHHhcC--
Confidence 8887633 247789999999997543334578999999999999999999987541
Q ss_pred cCccccccccccCCCCCCCCCcceEEEEEEeCCCCcHHHHHHHHHHHHhhcCCCcEEEEEeeccccCCCChhHHHHHHHh
Q 002525 755 EDNNLESGLTVNNNNKNSSFNTRKAYFYWVTREQGSFEWFKGIMNEVAEMDEKRVIELHNYCTSVYEEGDARSALIAMLQ 834 (912)
Q Consensus 755 ~~~~~~~~~~~~~~~~~~~~~~~rv~l~W~~R~~~~~~wf~~~L~el~~~~~~~~i~i~iy~T~~~~~~d~~s~l~~~~q 834 (912)
..++++|+|++|+.+++ ++.+.|.++++..+ +++++.++++... +.
T Consensus 135 --------------------~~~~v~l~~~~r~~~~~-~~~~~l~~l~~~~~--~~~~~~~~s~~~~--~~--------- 180 (236)
T cd06210 135 --------------------EPQEARLFFGVNTEAEL-FYLDELKRLADSLP--NLTVRICVWRPGG--EW--------- 180 (236)
T ss_pred --------------------CCceEEEEEecCCHHHh-hhHHHHHHHHHhCC--CeEEEEEEcCCCC--Cc---------
Confidence 13679999999999987 68888888877543 4777776664211 00
Q ss_pred hhccccCCcccccCCccccccCCCCHHHHHHHHHhhCCCCeEEEEEeCChHHHHHHHHHHHhhccCCCceEEEEeecC
Q 002525 835 SLHHAKNGVDVVSGTRVKSHFAKPNWRQVYKRIALHHPDSRIGVFYCGAPALTKELRQLASDFSHKTSTKFEFHKENF 912 (912)
Q Consensus 835 ~l~~~~~~~d~~sg~~v~~~~gRPd~~~vl~~~~~~~~~~~v~V~~CGP~~m~~~vr~~~~~~~~~~~~~~~fh~E~F 912 (912)
.| ..|+ +.+.+.+..... .....||+|||++|++.+++.+.+..- .+-.+|.|.|
T Consensus 181 ------------~~-----~~g~--~~~~l~~~l~~~-~~~~~vyicGp~~m~~~~~~~l~~~G~---~~~~i~~E~f 235 (236)
T cd06210 181 ------------EG-----YRGT--VVDALREDLASS-DAKPDIYLCGPPGMVDAAFAAAREAGV---PDEQVYLEKF 235 (236)
T ss_pred ------------CC-----ccCc--HHHHHHHhhccc-CCCcEEEEeCCHHHHHHHHHHHHHcCC---CHHHeeeccc
Confidence 00 0122 223333222111 123469999999999999998887532 2335788877
No 20
>cd06209 BenDO_FAD_NAD Benzoate dioxygenase reductase (BenDO) FAD/NAD binding domain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. As a Class I bacterial dioxygenases, benzoate dioxygenase like proteins combine an [2Fe-2S] cluster containing N-terminal ferredoxin at the end fused to an FAD/NADP(P) domain. In dioxygenase FAD/NAD(P) binding domain, the reductase transfers 2 electrons from NAD(P)H to the oxygenase which insert into an aromatic substrate, an initial step in microbial aerobic degradation of aromatic rings. Flavin oxidoreductases use flavins as substrates, unlike flavoenzymes which have a flavin prosthetic group.
Probab=99.94 E-value=2.2e-25 Score=236.41 Aligned_cols=221 Identities=17% Similarity=0.272 Sum_probs=168.2
Q ss_pred ceEEEEEEEecCCEEEEEEecCC--CccccCccEEEEEeCCCCCCcccceeeeecCCCCeEEEEEEec--CcchHHHHHH
Q 002525 605 PVKILKVAVYPGNVLALHMSKPQ--GFKYKSGQYMFVNCAAVSPFEWHPFSITSSPGDDYLSVHIRTL--GDWTRQLKTV 680 (912)
Q Consensus 605 ~~~i~~v~~~~~~v~~l~~~~p~--~~~~~pGQyv~l~~p~~s~~e~HPFTIaS~p~~~~l~l~Ir~~--G~~T~~L~~~ 680 (912)
.++|++++.+++++.+|+++.|. .+.|+||||+.|++|.. .++|||||+|.|.++.+.|+||.. |..|+.|.+.
T Consensus 3 ~~~V~~~~~~t~~~~~l~l~~~~~~~~~~~pGQ~v~l~~~~~--~~~r~ysi~s~~~~~~i~~~i~~~~~G~~s~~l~~~ 80 (228)
T cd06209 3 EATVTEVERLSDSTIGLTLELDEAGALAFLPGQYVNLQVPGT--DETRSYSFSSAPGDPRLEFLIRLLPGGAMSSYLRDR 80 (228)
T ss_pred eEEEEEEEEcCCCeEEEEEEcCCCCcCccCCCCEEEEEeCCC--CcccccccccCCCCCeEEEEEEEcCCCcchhhHHhc
Confidence 46889999999999999999876 67899999999999864 368999999999888999999986 7789888763
Q ss_pred HhhccCCCCCCCCccchhhhccCCCCCCeEEEeCCCCCCCCCCCCCCEEEEEEcCcchhhHHHHHHHHHHhccccCcccc
Q 002525 681 FSEVCQPAPAGKSGLLRAERENNSRGFPKILIDGPYGAPAQDYKKYDVVLLVGLGIGATPMISIVKDIINNMKSEDNNLE 760 (912)
Q Consensus 681 ~~~~~~~~~~g~sg~~~~~~~~~~~~~~~v~IdGPYG~~~~~~~~y~~vllVagGiGITP~lsiL~~l~~~~~~~~~~~~ 760 (912)
+ +.+..+.|.||||.+..+ ...+.++|||||+||||++|+++++..+.
T Consensus 81 l-----------------------~~G~~v~v~gP~G~~~~~-~~~~~~vlia~GtGIaP~~~ll~~~~~~~-------- 128 (228)
T cd06209 81 A-----------------------QPGDRLTLTGPLGSFYLR-EVKRPLLMLAGGTGLAPFLSMLDVLAEDG-------- 128 (228)
T ss_pred c-----------------------CCCCEEEEECCcccceec-CCCCeEEEEEcccCHhHHHHHHHHHHhcC--------
Confidence 3 246789999999997543 23478999999999999999999987642
Q ss_pred ccccccCCCCCCCCCcceEEEEEEeCCCCcHHHHHHHHHHHHhhcCCCcEEEEEeeccccCCCChhHHHHHHHhhhcccc
Q 002525 761 SGLTVNNNNKNSSFNTRKAYFYWVTREQGSFEWFKGIMNEVAEMDEKRVIELHNYCTSVYEEGDARSALIAMLQSLHHAK 840 (912)
Q Consensus 761 ~~~~~~~~~~~~~~~~~rv~l~W~~R~~~~~~wf~~~L~el~~~~~~~~i~i~iy~T~~~~~~d~~s~l~~~~q~l~~~~ 840 (912)
..++++|+|++|+.+++ .+.+.++++.+..+ +++++.++++..+. +
T Consensus 129 --------------~~~~v~l~~~~r~~~~~-~~~~~l~~l~~~~~--~~~~~~~~s~~~~~-~---------------- 174 (228)
T cd06209 129 --------------SAHPVHLVYGVTRDADL-VELDRLEALAERLP--GFSFRTVVADPDSW-H---------------- 174 (228)
T ss_pred --------------CCCcEEEEEecCCHHHh-ccHHHHHHHHHhCC--CeEEEEEEcCCCcc-C----------------
Confidence 13689999999999987 57888888876543 58888877753210 0
Q ss_pred CCcccccCCccccccCCCCHHHHHHHHHhhCCCCeEEEEEeCChHHHHHHHHHHHhhccCCCceEEEEeecC
Q 002525 841 NGVDVVSGTRVKSHFAKPNWRQVYKRIALHHPDSRIGVFYCGAPALTKELRQLASDFSHKTSTKFEFHKENF 912 (912)
Q Consensus 841 ~~~d~~sg~~v~~~~gRPd~~~vl~~~~~~~~~~~v~V~~CGP~~m~~~vr~~~~~~~~~~~~~~~fh~E~F 912 (912)
+ ..| .+.+.+.+.... ..+..||+|||++|++++++.+.+. +-..-.+|.|.|
T Consensus 175 -------~-----~~g--~v~~~~~~~~~~--~~~~~v~icGp~~m~~~~~~~l~~~---G~~~~~i~~E~F 227 (228)
T cd06209 175 -------P-----RKG--YVTDHLEAEDLN--DGDVDVYLCGPPPMVDAVRSWLDEQ---GIEPANFYYEKF 227 (228)
T ss_pred -------C-----CcC--CccHHHHHhhcc--CCCcEEEEeCCHHHHHHHHHHHHHc---CCCHHHEeeecc
Confidence 0 001 122333322111 1245799999999999999999865 333456888887
No 21
>cd06190 T4MO_e_transfer_like Toluene-4-monoxygenase electron transfer component of Pseudomonas mendocina hydroxylates toluene and forms p-cresol as part of a three component toluene-4-monoxygenase system. Electron transfer is from NADH to an NADH:ferredoxin oxidoreductase (TmoF in P. mendocina) to ferredoxin to an iron-containing oxygenase. TmoF is homologous to other mono- and dioxygenase systems within the ferredoxin reductase family.
Probab=99.94 E-value=2.4e-25 Score=236.82 Aligned_cols=227 Identities=13% Similarity=0.184 Sum_probs=166.1
Q ss_pred EEEEEecCCEEEEEEecCCCccccCccEEEEEeCCCCCCcccceeeeecCCC-CeEEEEEEec--CcchHHHHHHHhhcc
Q 002525 609 LKVAVYPGNVLALHMSKPQGFKYKSGQYMFVNCAAVSPFEWHPFSITSSPGD-DYLSVHIRTL--GDWTRQLKTVFSEVC 685 (912)
Q Consensus 609 ~~v~~~~~~v~~l~~~~p~~~~~~pGQyv~l~~p~~s~~e~HPFTIaS~p~~-~~l~l~Ir~~--G~~T~~L~~~~~~~~ 685 (912)
++++.+++++.+|+++.+.++.|+||||++|++|..+ ..|||||+|.|.+ +.++|+||.. |.+|+.|.+.+
T Consensus 2 ~~~~~~t~~~~~~~l~~~~~~~~~pGQ~v~l~~~~~~--~~r~ySi~s~~~~~~~~~~~vk~~~~G~~s~~l~~~~---- 75 (232)
T cd06190 2 VDVRELTHDVAEFRFALDGPADFLPGQYALLALPGVE--GARAYSMANLANASGEWEFIIKRKPGGAASNALFDNL---- 75 (232)
T ss_pred CceEEcCCCEEEEEEEcCCccccCCCCEEEEECCCCC--cccCccCCcCCCCCCEEEEEEEEcCCCcchHHHhhcC----
Confidence 4567788999999999888889999999999998753 6799999999875 7899999987 78999887643
Q ss_pred CCCCCCCCccchhhhccCCCCCCeEEEeCCCCCCCCCCCCCCEEEEEEcCcchhhHHHHHHHHHHhccccCccccccccc
Q 002525 686 QPAPAGKSGLLRAERENNSRGFPKILIDGPYGAPAQDYKKYDVVLLVGLGIGATPMISIVKDIINNMKSEDNNLESGLTV 765 (912)
Q Consensus 686 ~~~~~g~sg~~~~~~~~~~~~~~~v~IdGPYG~~~~~~~~y~~vllVagGiGITP~lsiL~~l~~~~~~~~~~~~~~~~~ 765 (912)
..+..+.|.||||.+.......+.+||||||+||||++|+++++......
T Consensus 76 -------------------~~g~~v~v~gP~G~~~~~~~~~~~illIagG~GiaP~~~~l~~~~~~~~~----------- 125 (232)
T cd06190 76 -------------------EPGDELELDGPYGLAYLRPDEDRDIVCIAGGSGLAPMLSILRGAARSPYL----------- 125 (232)
T ss_pred -------------------CCCCEEEEECCcccceecCCCCCcEEEEeeCcCHHHHHHHHHHHHhcccC-----------
Confidence 14678999999999864434567899999999999999999998764211
Q ss_pred cCCCCCCCCCcceEEEEEEeCCCCcHHHHHHHHHHHHhhcCCCcEEEEEeeccccCCCChhHHHHHHHhhhccccCCccc
Q 002525 766 NNNNKNSSFNTRKAYFYWVTREQGSFEWFKGIMNEVAEMDEKRVIELHNYCTSVYEEGDARSALIAMLQSLHHAKNGVDV 845 (912)
Q Consensus 766 ~~~~~~~~~~~~rv~l~W~~R~~~~~~wf~~~L~el~~~~~~~~i~i~iy~T~~~~~~d~~s~l~~~~q~l~~~~~~~d~ 845 (912)
...+++|+|++|+.+++ .|.+++.++++.. ..++++..+++..+..+.
T Consensus 126 ---------~~~~v~l~~~~r~~~~~-~~~~el~~l~~~~--~~~~~~~~~s~~~~~~~~-------------------- 173 (232)
T cd06190 126 ---------SDRPVDLFYGGRTPSDL-CALDELSALVALG--ARLRVTPAVSDAGSGSAA-------------------- 173 (232)
T ss_pred ---------CCCeEEEEEeecCHHHH-hhHHHHHHHHHhC--CCEEEEEEeCCCCCCcCC--------------------
Confidence 14689999999999987 6888888887753 357777766643211000
Q ss_pred ccCCccccccCCCCHHHHHHHHHhhCCCCeEEEEEeCChHHHHHHHHHHHhhccCCCceEEEEeecC
Q 002525 846 VSGTRVKSHFAKPNWRQVYKRIALHHPDSRIGVFYCGAPALTKELRQLASDFSHKTSTKFEFHKENF 912 (912)
Q Consensus 846 ~sg~~v~~~~gRPd~~~vl~~~~~~~~~~~v~V~~CGP~~m~~~vr~~~~~~~~~~~~~~~fh~E~F 912 (912)
....+.|+. .+.+.+..... .....||+|||++|++.+++.+.+.... ..-.+|.|.|
T Consensus 174 ----~~~~~~g~v--~~~l~~~~~~~-~~~~~vyiCGp~~m~~~v~~~l~~~g~~--~~~~i~~e~f 231 (232)
T cd06190 174 ----GWDGPTGFV--HEVVEATLGDR-LAEFEFYFAGPPPMVDAVQRMLMIEGVV--PFDQIHFDRF 231 (232)
T ss_pred ----CccCCcCcH--HHHHHhhccCC-ccccEEEEECCHHHHHHHHHHHHHhCCC--ChHheeeccc
Confidence 000111332 23444433221 2245899999999999999988775321 1335788877
No 22
>cd06194 FNR_N-term_Iron_sulfur_binding Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an N-terminal Iron-Sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second e
Probab=99.94 E-value=1.3e-25 Score=237.11 Aligned_cols=216 Identities=19% Similarity=0.259 Sum_probs=162.2
Q ss_pred EEEEEecCCEEEEEEecCCCccccCccEEEEEeCCCCCCcccceeeeecCCC-CeEEEEEEec--CcchHHHHHHHhhcc
Q 002525 609 LKVAVYPGNVLALHMSKPQGFKYKSGQYMFVNCAAVSPFEWHPFSITSSPGD-DYLSVHIRTL--GDWTRQLKTVFSEVC 685 (912)
Q Consensus 609 ~~v~~~~~~v~~l~~~~p~~~~~~pGQyv~l~~p~~s~~e~HPFTIaS~p~~-~~l~l~Ir~~--G~~T~~L~~~~~~~~ 685 (912)
.+++.+++++++++++.|..+.|+||||++|++|.. ..|||||+|.|.+ +.+.|+||.. |.+|..|.+.+
T Consensus 2 ~~~~~~~~~~~~i~l~~~~~~~~~pGQ~v~l~~~~~---~~r~ySi~s~~~~~~~~~~~i~~~~~G~~s~~l~~~~---- 74 (222)
T cd06194 2 VSLQRLSPDVLRVRLEPDRPLPYLPGQYVNLRRAGG---LARSYSPTSLPDGDNELEFHIRRKPNGAFSGWLGEEA---- 74 (222)
T ss_pred ceeeecCCCEEEEEEecCCCCCcCCCCEEEEEcCCC---CceeeecCCCCCCCCEEEEEEEeccCCccchHHHhcc----
Confidence 467778999999999998888999999999999863 5699999999876 7899999986 67898887643
Q ss_pred CCCCCCCCccchhhhccCCCCCCeEEEeCCCCCCCCCC-CCCCEEEEEEcCcchhhHHHHHHHHHHhccccCcccccccc
Q 002525 686 QPAPAGKSGLLRAERENNSRGFPKILIDGPYGAPAQDY-KKYDVVLLVGLGIGATPMISIVKDIINNMKSEDNNLESGLT 764 (912)
Q Consensus 686 ~~~~~g~sg~~~~~~~~~~~~~~~v~IdGPYG~~~~~~-~~y~~vllVagGiGITP~lsiL~~l~~~~~~~~~~~~~~~~ 764 (912)
..+..+.|.||||.+.... ..++.+++||||+||||+++++++++...
T Consensus 75 -------------------~~G~~v~i~gP~G~~~~~~~~~~~~~v~iagG~Giap~~~~l~~~~~~~------------ 123 (222)
T cd06194 75 -------------------RPGHALRLQGPFGQAFYRPEYGEGPLLLVGAGTGLAPLWGIARAALRQG------------ 123 (222)
T ss_pred -------------------CCCCEEEEecCcCCeeccCCCCCCCEEEEecCcchhhHHHHHHHHHhcC------------
Confidence 1467899999999976432 45678999999999999999999987541
Q ss_pred ccCCCCCCCCCcceEEEEEEeCCCCcHHHHHHHHHHHHhhcCCCcEEEEEeeccccCCCChhHHHHHHHhhhccccCCcc
Q 002525 765 VNNNNKNSSFNTRKAYFYWVTREQGSFEWFKGIMNEVAEMDEKRVIELHNYCTSVYEEGDARSALIAMLQSLHHAKNGVD 844 (912)
Q Consensus 765 ~~~~~~~~~~~~~rv~l~W~~R~~~~~~wf~~~L~el~~~~~~~~i~i~iy~T~~~~~~d~~s~l~~~~q~l~~~~~~~d 844 (912)
..++++|+|++|+.+++ +|.++++++++... .++++.++++.... ..
T Consensus 124 ----------~~~~v~l~~~~r~~~~~-~~~~el~~l~~~~~--~~~~~~~~~~~~~~-~~------------------- 170 (222)
T cd06194 124 ----------HQGEIRLVHGARDPDDL-YLHPALLWLAREHP--NFRYIPCVSEGSQG-DP------------------- 170 (222)
T ss_pred ----------CCccEEEEEecCChhhc-cCHHHHHHHHHHCC--CeEEEEEEccCCCC-Cc-------------------
Confidence 13679999999999997 78999998876433 47777666653110 00
Q ss_pred cccCCccccccCCCCHHHHHHHHHhhCCCCeEEEEEeCChHHHHHHHHHHHhhccCCCceEEEEeecC
Q 002525 845 VVSGTRVKSHFAKPNWRQVYKRIALHHPDSRIGVFYCGAPALTKELRQLASDFSHKTSTKFEFHKENF 912 (912)
Q Consensus 845 ~~sg~~v~~~~gRPd~~~vl~~~~~~~~~~~v~V~~CGP~~m~~~vr~~~~~~~~~~~~~~~fh~E~F 912 (912)
+.....+...+.. ......||+|||++|++++++.+.+.. -..-.+|.|.|
T Consensus 171 ------------~~~~~~~~~~~~~--~~~~~~vyicGp~~m~~~~~~~L~~~G---v~~~~i~~e~f 221 (222)
T cd06194 171 ------------RVRAGRIAAHLPP--LTRDDVVYLCGAPSMVNAVRRRAFLAG---APMKRIYADPF 221 (222)
T ss_pred ------------ccccchhhhhhcc--ccCCCEEEEeCCHHHHHHHHHHHHHcC---CCHHHeeeccc
Confidence 0011122222211 122457999999999999999988753 33456777776
No 23
>cd06211 phenol_2-monooxygenase_like Phenol 2-monooxygenase (phenol hydroxylase) is a flavoprotein monooxygenase, able to use molecular oxygen as a substrate in the microbial degredation of phenol. This protein is encoded by a single gene and uses a tightly bound FAD cofactor in the NAD(P)H dependent conversion of phenol and O2 to catechol and H2O. This group is related to the NAD binding ferredoxin reductases.
Probab=99.94 E-value=2.8e-25 Score=237.28 Aligned_cols=227 Identities=15% Similarity=0.226 Sum_probs=169.3
Q ss_pred cceEEEEEEEecCCEEEEEEecCCCc--cccCccEEEEEeCCCCCCcccceeeeecCC-CCeEEEEEEec--CcchHHHH
Q 002525 604 EPVKILKVAVYPGNVLALHMSKPQGF--KYKSGQYMFVNCAAVSPFEWHPFSITSSPG-DDYLSVHIRTL--GDWTRQLK 678 (912)
Q Consensus 604 ~~~~i~~v~~~~~~v~~l~~~~p~~~--~~~pGQyv~l~~p~~s~~e~HPFTIaS~p~-~~~l~l~Ir~~--G~~T~~L~ 678 (912)
..++|.+++.+++++.+++++.|.+. .|+||||+.|++|.. -++|||||+|.|. ++.+.|+||.. |..|+.|.
T Consensus 7 ~~~~v~~~~~~t~~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~~--~~~r~ySi~s~~~~~~~l~l~i~~~~~G~~s~~l~ 84 (238)
T cd06211 7 FEGTVVEIEDLTPTIKGVRLKLDEPEEIEFQAGQYVNLQAPGY--EGTRAFSIASSPSDAGEIELHIRLVPGGIATTYVH 84 (238)
T ss_pred EeEEEEEEEecCCCEEEEEEEcCCCCcCccCCCCeEEEEcCCC--CCccccccCCCCCCCCEEEEEEEECCCCcchhhHh
Confidence 45788999999999999999987764 899999999999864 3689999999986 57899999998 88899886
Q ss_pred HHHhhccCCCCCCCCccchhhhccCCCCCCeEEEeCCCCCCCCCCCCCCEEEEEEcCcchhhHHHHHHHHHHhccccCcc
Q 002525 679 TVFSEVCQPAPAGKSGLLRAERENNSRGFPKILIDGPYGAPAQDYKKYDVVLLVGLGIGATPMISIVKDIINNMKSEDNN 758 (912)
Q Consensus 679 ~~~~~~~~~~~~g~sg~~~~~~~~~~~~~~~v~IdGPYG~~~~~~~~y~~vllVagGiGITP~lsiL~~l~~~~~~~~~~ 758 (912)
+.+ ..+..|.|.||||.+.......+.+|+||||+||||++|++++++.+.
T Consensus 85 ~~l-----------------------~~G~~v~i~gP~G~~~~~~~~~~~~v~iagG~GiaP~~~~l~~~~~~~------ 135 (238)
T cd06211 85 KQL-----------------------KEGDELEISGPYGDFFVRDSDQRPIIFIAGGSGLSSPRSMILDLLERG------ 135 (238)
T ss_pred hcC-----------------------CCCCEEEEECCccceEecCCCCCCEEEEeCCcCHHHHHHHHHHHHhcC------
Confidence 433 146789999999998644334578999999999999999999987541
Q ss_pred ccccccccCCCCCCCCCcceEEEEEEeCCCCcHHHHHHHHHHHHhhcCCCcEEEEEeeccccCCCChhHHHHHHHhhhcc
Q 002525 759 LESGLTVNNNNKNSSFNTRKAYFYWVTREQGSFEWFKGIMNEVAEMDEKRVIELHNYCTSVYEEGDARSALIAMLQSLHH 838 (912)
Q Consensus 759 ~~~~~~~~~~~~~~~~~~~rv~l~W~~R~~~~~~wf~~~L~el~~~~~~~~i~i~iy~T~~~~~~d~~s~l~~~~q~l~~ 838 (912)
..+++.|+|++|+.+++ +|.++++++++... ++.++..+++..++..
T Consensus 136 ----------------~~~~v~l~~~~r~~~~~-~~~~~l~~l~~~~~--~~~~~~~~s~~~~~~~-------------- 182 (238)
T cd06211 136 ----------------DTRKITLFFGARTRAEL-YYLDEFEALEKDHP--NFKYVPALSREPPESN-------------- 182 (238)
T ss_pred ----------------CCCcEEEEEecCChhhh-ccHHHHHHHHHhCC--CeEEEEEECCCCCCcC--------------
Confidence 12579999999999997 88999998876543 4666666665321100
Q ss_pred ccCCcccccCCccccccCCCCHHHHHHHHHhhCCCCeEEEEEeCChHHHHHHHHHHHhhccCCCceEEEEeecC
Q 002525 839 AKNGVDVVSGTRVKSHFAKPNWRQVYKRIALHHPDSRIGVFYCGAPALTKELRQLASDFSHKTSTKFEFHKENF 912 (912)
Q Consensus 839 ~~~~~d~~sg~~v~~~~gRPd~~~vl~~~~~~~~~~~v~V~~CGP~~m~~~vr~~~~~~~~~~~~~~~fh~E~F 912 (912)
..| ..|| +.+++.+..... .....||+|||++|++++.+++.+..- ..-.+|.|.|
T Consensus 183 -------~~~-----~~g~--v~~~l~~~~~~~-~~~~~vyvCGp~~m~~~~~~~L~~~Gv---~~~~i~~e~F 238 (238)
T cd06211 183 -------WKG-----FTGF--VHDAAKKHFKND-FRGHKAYLCGPPPMIDACIKTLMQGRL---FERDIYYEKF 238 (238)
T ss_pred -------ccc-----ccCc--HHHHHHHhcccc-cccCEEEEECCHHHHHHHHHHHHHcCC---CHHHccccCC
Confidence 001 1133 234444433211 123579999999999999999887643 2345788877
No 24
>cd06214 PA_degradation_oxidoreductase_like NAD(P) binding domain of ferredoxin reductase like phenylacetic acid (PA) degradation oxidoreductase. PA oxidoreductases of E. coli hydroxylate PA-CoA in the second step of PA degradation. Members of this group typically fuse a ferredoxin reductase-like domain with an iron-sulfur binding cluster domain. Ferredoxins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal portion may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and
Probab=99.94 E-value=6.3e-25 Score=234.88 Aligned_cols=230 Identities=16% Similarity=0.281 Sum_probs=171.6
Q ss_pred cceEEEEEEEecCCEEEEEEecCCC----ccccCccEEEEEeCCCCCCcccceeeeecCCCCeEEEEEEec--CcchHHH
Q 002525 604 EPVKILKVAVYPGNVLALHMSKPQG----FKYKSGQYMFVNCAAVSPFEWHPFSITSSPGDDYLSVHIRTL--GDWTRQL 677 (912)
Q Consensus 604 ~~~~i~~v~~~~~~v~~l~~~~p~~----~~~~pGQyv~l~~p~~s~~e~HPFTIaS~p~~~~l~l~Ir~~--G~~T~~L 677 (912)
+.++|++++.+++++.+++++.|.+ +.|+||||+.|++|..+...+|||||+|.|+++.+.|+||.. |..|..|
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~v~l~~~~~g~~~~r~ysi~s~~~~~~l~~~i~~~~~G~~s~~l 81 (241)
T cd06214 2 HPLTVAEVVRETADAVSITFDVPEELRDAFRYRPGQFLTLRVPIDGEEVRRSYSICSSPGDDELRITVKRVPGGRFSNWA 81 (241)
T ss_pred ceEEEEEEEecCCCeEEEEEecCcccCCCCCcCCCCeEEEEeecCCCeeeeeeeecCCCCCCcEEEEEEEcCCCccchhH
Confidence 4678999999999999999998765 589999999999996566789999999999877999999997 6788888
Q ss_pred HHHHhhccCCCCCCCCccchhhhccCCCCCCeEEEeCCCCCCCCCCC-CCCEEEEEEcCcchhhHHHHHHHHHHhccccC
Q 002525 678 KTVFSEVCQPAPAGKSGLLRAERENNSRGFPKILIDGPYGAPAQDYK-KYDVVLLVGLGIGATPMISIVKDIINNMKSED 756 (912)
Q Consensus 678 ~~~~~~~~~~~~~g~sg~~~~~~~~~~~~~~~v~IdGPYG~~~~~~~-~y~~vllVagGiGITP~lsiL~~l~~~~~~~~ 756 (912)
.+.+ ..+..+.|.||+|.+..... .++.+||||||+||||++++++++.....
T Consensus 82 ~~~~-----------------------~~G~~v~i~gP~G~~~~~~~~~~~~~llia~GtGiap~~~~~~~~~~~~~--- 135 (241)
T cd06214 82 NDEL-----------------------KAGDTLEVMPPAGRFTLPPLPGARHYVLFAAGSGITPVLSILKTALAREP--- 135 (241)
T ss_pred Hhcc-----------------------CCCCEEEEeCCccccccCCCCCCCcEEEEecccChhhHHHHHHHHHhcCC---
Confidence 6433 14678999999998754433 47899999999999999999999876421
Q ss_pred ccccccccccCCCCCCCCCcceEEEEEEeCCCCcHHHHHHHHHHHHhhcCCCcEEEEEeeccccCCCChhHHHHHHHhhh
Q 002525 757 NNLESGLTVNNNNKNSSFNTRKAYFYWVTREQGSFEWFKGIMNEVAEMDEKRVIELHNYCTSVYEEGDARSALIAMLQSL 836 (912)
Q Consensus 757 ~~~~~~~~~~~~~~~~~~~~~rv~l~W~~R~~~~~~wf~~~L~el~~~~~~~~i~i~iy~T~~~~~~d~~s~l~~~~q~l 836 (912)
.++++++|++|+.+++ +|.++++++++... ..++++.++|+... +.
T Consensus 136 -------------------~~~v~l~~~~r~~~~~-~~~~~l~~l~~~~~-~~~~~~~~~~~~~~--~~----------- 181 (241)
T cd06214 136 -------------------ASRVTLVYGNRTEASV-IFREELADLKARYP-DRLTVIHVLSREQG--DP----------- 181 (241)
T ss_pred -------------------CCcEEEEEEeCCHHHh-hHHHHHHHHHHhCc-CceEEEEEecCCCC--Cc-----------
Confidence 3679999999999997 78888988865432 35777666664211 00
Q ss_pred ccccCCcccccCCccccccCCCCHHHHHHHHHhh--CCCCeEEEEEeCChHHHHHHHHHHHhhccCCCceEEEEeecC
Q 002525 837 HHAKNGVDVVSGTRVKSHFAKPNWRQVYKRIALH--HPDSRIGVFYCGAPALTKELRQLASDFSHKTSTKFEFHKENF 912 (912)
Q Consensus 837 ~~~~~~~d~~sg~~v~~~~gRPd~~~vl~~~~~~--~~~~~v~V~~CGP~~m~~~vr~~~~~~~~~~~~~~~fh~E~F 912 (912)
..+.||.+-. ++.+.... .+.....||+|||++|++.+++.+.+.. -..-.+|.|.|
T Consensus 182 ---------------~~~~g~~~~~-~~~~~~~~~~~~~~~~~v~icGp~~mv~~v~~~l~~~G---~~~~~i~~e~f 240 (241)
T cd06214 182 ---------------DLLRGRLDAA-KLNALLKNLLDATEFDEAFLCGPEPMMDAVEAALLELG---VPAERIHRELF 240 (241)
T ss_pred ---------------ccccCccCHH-HHHHhhhhhcccccCcEEEEECCHHHHHHHHHHHHHcC---CCHHHeecccc
Confidence 0123565522 22222211 1223468999999999999999987753 23445777776
No 25
>cd06187 O2ase_reductase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons using oxygen as the oxidant. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate, while mono-oxygenases (aka mixed oxygenases) add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=99.94 E-value=3.2e-25 Score=234.35 Aligned_cols=221 Identities=17% Similarity=0.287 Sum_probs=163.9
Q ss_pred EEEEEEecCCEEEEEEecCCCccccCccEEEEEeCCCCCCcccceeeeecCCC-CeEEEEEEec--CcchHHHHHHHhhc
Q 002525 608 ILKVAVYPGNVLALHMSKPQGFKYKSGQYMFVNCAAVSPFEWHPFSITSSPGD-DYLSVHIRTL--GDWTRQLKTVFSEV 684 (912)
Q Consensus 608 i~~v~~~~~~v~~l~~~~p~~~~~~pGQyv~l~~p~~s~~e~HPFTIaS~p~~-~~l~l~Ir~~--G~~T~~L~~~~~~~ 684 (912)
|+++..+++++.+++++.|..+.|+||||+.|.+|..+. .+|||||+|.|.+ +.++|+||.. |.+|+.|.+.+
T Consensus 1 v~~~~~~~~~~~~~~l~~~~~~~~~pGq~i~l~~~~~~~-~~r~ysi~s~~~~~~~~~~~i~~~~~G~~s~~l~~~l--- 76 (224)
T cd06187 1 VVSVERLTHDIAVVRLQLDQPLPFWAGQYVNVTVPGRPR-TWRAYSPANPPNEDGEIEFHVRAVPGGRVSNALHDEL--- 76 (224)
T ss_pred CeeeeecCCCEEEEEEEeCCCCCcCCCceEEEEcCCCCC-cceeccccCCCCCCCEEEEEEEeCCCCcchHHHhhcC---
Confidence 356778889999999998888899999999999986543 6899999999875 7899999998 88999887633
Q ss_pred cCCCCCCCCccchhhhccCCCCCCeEEEeCCCCCCCCCCCCCCEEEEEEcCcchhhHHHHHHHHHHhccccCcccccccc
Q 002525 685 CQPAPAGKSGLLRAERENNSRGFPKILIDGPYGAPAQDYKKYDVVLLVGLGIGATPMISIVKDIINNMKSEDNNLESGLT 764 (912)
Q Consensus 685 ~~~~~~g~sg~~~~~~~~~~~~~~~v~IdGPYG~~~~~~~~y~~vllVagGiGITP~lsiL~~l~~~~~~~~~~~~~~~~ 764 (912)
..+..+.|.||||.+......++.+|+||||+||||++|+++++..+.
T Consensus 77 --------------------~~G~~v~i~gP~G~~~~~~~~~~~~lliagG~GI~p~~sll~~~~~~~------------ 124 (224)
T cd06187 77 --------------------KVGDRVRLSGPYGTFYLRRDHDRPVLCIAGGTGLAPLRAIVEDALRRG------------ 124 (224)
T ss_pred --------------------ccCCEEEEeCCccceEecCCCCCCEEEEecCcCHHHHHHHHHHHHhcC------------
Confidence 146789999999997644334678999999999999999999987542
Q ss_pred ccCCCCCCCCCcceEEEEEEeCCCCcHHHHHHHHHHHHhhcCCCcEEEEEeeccccCCCChhHHHHHHHhhhccccCCcc
Q 002525 765 VNNNNKNSSFNTRKAYFYWVTREQGSFEWFKGIMNEVAEMDEKRVIELHNYCTSVYEEGDARSALIAMLQSLHHAKNGVD 844 (912)
Q Consensus 765 ~~~~~~~~~~~~~rv~l~W~~R~~~~~~wf~~~L~el~~~~~~~~i~i~iy~T~~~~~~d~~s~l~~~~q~l~~~~~~~d 844 (912)
..+++.++|++|+.+++ ++.+.++++++... .++++.++++..+..
T Consensus 125 ----------~~~~v~l~~~~~~~~~~-~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~--------------------- 170 (224)
T cd06187 125 ----------EPRPVHLFFGARTERDL-YDLEGLLALAARHP--WLRVVPVVSHEEGAW--------------------- 170 (224)
T ss_pred ----------CCCCEEEEEecCChhhh-cChHHHHHHHHhCC--CeEEEEEeCCCCCcc---------------------
Confidence 14689999999999987 67788888766433 467766666431100
Q ss_pred cccCCccccccCCCCHHHHHHHHHhhCCCCeEEEEEeCChHHHHHHHHHHHhhccCCCceEEEEeecC
Q 002525 845 VVSGTRVKSHFAKPNWRQVYKRIALHHPDSRIGVFYCGAPALTKELRQLASDFSHKTSTKFEFHKENF 912 (912)
Q Consensus 845 ~~sg~~v~~~~gRPd~~~vl~~~~~~~~~~~v~V~~CGP~~m~~~vr~~~~~~~~~~~~~~~fh~E~F 912 (912)
.| .+..+.+.+.+... +.....||+|||++|++++++.+++.. -.+-.+|.|.|
T Consensus 171 --~~-------~~g~~~~~~~~~~~--~~~~~~v~vcGp~~~~~~v~~~l~~~G---~~~~~i~~e~f 224 (224)
T cd06187 171 --TG-------RRGLVTDVVGRDGP--DWADHDIYICGPPAMVDATVDALLARG---APPERIHFDKF 224 (224)
T ss_pred --CC-------CcccHHHHHHHhcc--ccccCEEEEECCHHHHHHHHHHHHHcC---CCHHHeeccCC
Confidence 00 01122233322211 112357999999999999999988753 23445777776
No 26
>cd06188 NADH_quinone_reductase Na+-translocating NADH:quinone oxidoreductase (Na+-NQR) FAD/NADH binding domain. (Na+-NQR) provides a means of storing redox reaction energy via the transmembrane translocation of Na2+ ions. The C-terminal domain resembles ferredoxin:NADP+ oxidoreductase, and has NADH and FAD binding sites. (Na+-NQR) is distinct from H+-translocating NADH:quinone oxidoreductases and noncoupled NADH:quinone oxidoreductases. The NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain of this group typically contains an iron-sulfur cluster binding domain.
Probab=99.93 E-value=2.5e-25 Score=243.85 Aligned_cols=230 Identities=16% Similarity=0.306 Sum_probs=168.3
Q ss_pred cceEEEEEEEecCCEEEEEEecCCC--ccccCccEEEEEeCCC-----------------------------CCCcccce
Q 002525 604 EPVKILKVAVYPGNVLALHMSKPQG--FKYKSGQYMFVNCAAV-----------------------------SPFEWHPF 652 (912)
Q Consensus 604 ~~~~i~~v~~~~~~v~~l~~~~p~~--~~~~pGQyv~l~~p~~-----------------------------s~~e~HPF 652 (912)
..++|++++.+++++.+++++.|.+ +.|+||||+.|.+|.. +...+|||
T Consensus 10 ~~~~v~~~~~~~~d~~~l~l~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~y 89 (283)
T cd06188 10 WECTVISNDNVATFIKELVLKLPSGEEIAFKAGGYIQIEIPAYEIAYADFDVAEKYRADWDKFGLWQLVFKHDEPVSRAY 89 (283)
T ss_pred EEEEEEEcccccchhhheEEecCCCceeeecCCceEEEEcCCccccccccccchhhhhHHhhhcccccccccCCcccccc
Confidence 4567888888999999999998875 7899999999999853 12245999
Q ss_pred eeeecCC-CCeEEEEEEe-----------cCcchHHHHHHHhhccCCCCCCCCccchhhhccCCCCCCeEEEeCCCCCCC
Q 002525 653 SITSSPG-DDYLSVHIRT-----------LGDWTRQLKTVFSEVCQPAPAGKSGLLRAERENNSRGFPKILIDGPYGAPA 720 (912)
Q Consensus 653 TIaS~p~-~~~l~l~Ir~-----------~G~~T~~L~~~~~~~~~~~~~g~sg~~~~~~~~~~~~~~~v~IdGPYG~~~ 720 (912)
||+|+|. ++.+.|+||. .|..|+.|.+ + ..+..+.|.||||.+.
T Consensus 90 Sias~p~~~~~l~l~vk~~~~~~~~~~~~~G~~S~~L~~-l-----------------------~~Gd~v~i~gP~G~f~ 145 (283)
T cd06188 90 SLANYPAEEGELKLNVRIATPPPGNSDIPPGIGSSYIFN-L-----------------------KPGDKVTASGPFGEFF 145 (283)
T ss_pred CcCCCCCCCCeEEEEEEEeccCCccCCCCCceehhHHhc-C-----------------------CCCCEEEEECcccccc
Confidence 9999996 5789999996 4667888865 2 2578999999999986
Q ss_pred CCCCCCCEEEEEEcCcchhhHHHHHHHHHHhccccCccccccccccCCCCCCCCCcceEEEEEEeCCCCcHHHHHHHHHH
Q 002525 721 QDYKKYDVVLLVGLGIGATPMISIVKDIINNMKSEDNNLESGLTVNNNNKNSSFNTRKAYFYWVTREQGSFEWFKGIMNE 800 (912)
Q Consensus 721 ~~~~~y~~vllVagGiGITP~lsiL~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~l~W~~R~~~~~~wf~~~L~e 800 (912)
.+ ...+.+|||||||||||++|++++++.... ..++++|+|++|+.+++ +|.++|.+
T Consensus 146 l~-~~~~~~vlIAgGtGItP~~s~l~~~~~~~~---------------------~~~~v~l~~g~r~~~d~-~~~~el~~ 202 (283)
T cd06188 146 IK-DTDREMVFIGGGAGMAPLRSHIFHLLKTLK---------------------SKRKISFWYGARSLKEL-FYQEEFEA 202 (283)
T ss_pred cc-CCCCcEEEEEecccHhHHHHHHHHHHhcCC---------------------CCceEEEEEecCCHHHh-hHHHHHHH
Confidence 54 345789999999999999999999875421 13689999999999886 78889988
Q ss_pred HHhhcCCCcEEEEEeeccccCCCChhHHHHHHHhhhccccCCcccccCCccccccCCCCHHHHHHHHHhhC-CCCeEEEE
Q 002525 801 VAEMDEKRVIELHNYCTSVYEEGDARSALIAMLQSLHHAKNGVDVVSGTRVKSHFAKPNWRQVYKRIALHH-PDSRIGVF 879 (912)
Q Consensus 801 l~~~~~~~~i~i~iy~T~~~~~~d~~s~l~~~~q~l~~~~~~~d~~sg~~v~~~~gRPd~~~vl~~~~~~~-~~~~v~V~ 879 (912)
+++..+ ++++++.+|+..+. +. ..| +.||.+ +.+.+...... ...+..||
T Consensus 203 l~~~~~--~~~~~~~~s~~~~~-~~--------------------~~~-----~~G~v~-~~~~~~~~~~~~~~~~~~vy 253 (283)
T cd06188 203 LEKEFP--NFKYHPVLSEPQPE-DN--------------------WDG-----YTGFIH-QVLLENYLKKHPAPEDIEFY 253 (283)
T ss_pred HHHHCC--CeEEEEEECCCCcc-CC--------------------CCC-----cceeec-HHHHHHHhccCCCCCCeEEE
Confidence 876543 47777666643210 10 000 113332 22333322221 12346799
Q ss_pred EeCChHHHHHHHHHHHhhccCCCceEEEEeecC
Q 002525 880 YCGAPALTKELRQLASDFSHKTSTKFEFHKENF 912 (912)
Q Consensus 880 ~CGP~~m~~~vr~~~~~~~~~~~~~~~fh~E~F 912 (912)
+|||++|++.+++++.+..- .+-.+|.|.|
T Consensus 254 iCGP~~m~~~~~~~l~~~Gv---~~~~i~~e~F 283 (283)
T cd06188 254 LCGPPPMNSAVIKMLDDLGV---PRENIAFDDF 283 (283)
T ss_pred EECCHHHHHHHHHHHHHcCC---CHHHeeccCC
Confidence 99999999999999887643 3556788887
No 27
>TIGR02160 PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase, PaaK subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=99.93 E-value=6.9e-25 Score=247.78 Aligned_cols=230 Identities=16% Similarity=0.238 Sum_probs=169.6
Q ss_pred cceEEEEEEEecCCEEEEEEecCC----CccccCccEEEEEeCCCCCCcccceeeeecCCCCeEEEEEEec--CcchHHH
Q 002525 604 EPVKILKVAVYPGNVLALHMSKPQ----GFKYKSGQYMFVNCAAVSPFEWHPFSITSSPGDDYLSVHIRTL--GDWTRQL 677 (912)
Q Consensus 604 ~~~~i~~v~~~~~~v~~l~~~~p~----~~~~~pGQyv~l~~p~~s~~e~HPFTIaS~p~~~~l~l~Ir~~--G~~T~~L 677 (912)
+.++|.+++.+++++.+|+|+.|. .+.|+||||+.|.++..+...+|||||+|.|+++.++|+||.. |..|..|
T Consensus 2 ~~~~V~~i~~~t~~~~~l~l~~~~~~~~~~~~~pGQ~v~l~~~~~g~~~~R~ySi~s~p~~~~l~i~vk~~~~G~~S~~l 81 (352)
T TIGR02160 2 HRLTVAEVERLTADAVAISFEIPDELAEDYRFAPGQHLTLRREVDGEELRRSYSICSAPAPGEIRVAVKKIPGGLFSTWA 81 (352)
T ss_pred eEeEEEEEEecCCCeEEEEEeCCccccccCCCCCCCeEEEEEecCCcEeeeeccccCCCCCCcEEEEEEEeCCCcchHHH
Confidence 567899999999999999999764 3689999999999975454568999999999888999999987 4578887
Q ss_pred HHHHhhccCCCCCCCCccchhhhccCCCCCCeEEEeCCCCCCCCCCC--CCCEEEEEEcCcchhhHHHHHHHHHHhcccc
Q 002525 678 KTVFSEVCQPAPAGKSGLLRAERENNSRGFPKILIDGPYGAPAQDYK--KYDVVLLVGLGIGATPMISIVKDIINNMKSE 755 (912)
Q Consensus 678 ~~~~~~~~~~~~~g~sg~~~~~~~~~~~~~~~v~IdGPYG~~~~~~~--~y~~vllVagGiGITP~lsiL~~l~~~~~~~ 755 (912)
.+.+ +.+..+.|.||+|.+..+.. ..+.+|||||||||||++|++++++.+.
T Consensus 82 ~~~l-----------------------~~Gd~v~v~gP~G~f~~~~~~~~~~~~lliagG~GItP~~s~l~~~~~~~--- 135 (352)
T TIGR02160 82 NDEI-----------------------RPGDTLEVMAPQGLFTPDLSTPHAGHYVAVAAGSGITPMLSIAETVLAAE--- 135 (352)
T ss_pred HhcC-----------------------CCCCEEEEeCCceeeecCCCccccccEEEEeccccHhHHHHHHHHHHhcC---
Confidence 6543 25788999999999754322 3478999999999999999999987641
Q ss_pred CccccccccccCCCCCCCCCcceEEEEEEeCCCCcHHHHHHHHHHHHhhcCCCcEEEEEeeccccCCCChhHHHHHHHhh
Q 002525 756 DNNLESGLTVNNNNKNSSFNTRKAYFYWVTREQGSFEWFKGIMNEVAEMDEKRVIELHNYCTSVYEEGDARSALIAMLQS 835 (912)
Q Consensus 756 ~~~~~~~~~~~~~~~~~~~~~~rv~l~W~~R~~~~~~wf~~~L~el~~~~~~~~i~i~iy~T~~~~~~d~~s~l~~~~q~ 835 (912)
..++++|+|++|+.+++ +|.++|+++++..+ ..++++..+++..+..+
T Consensus 136 -------------------~~~~v~l~~~~r~~~d~-~~~~el~~l~~~~~-~~~~~~~~~s~~~~~~~----------- 183 (352)
T TIGR02160 136 -------------------PRSTFTLVYGNRRTASV-MFAEELADLKDKHP-QRFHLAHVLSREPREAP----------- 183 (352)
T ss_pred -------------------CCceEEEEEEeCCHHHH-HHHHHHHHHHHhCc-CcEEEEEEecCCCcCcc-----------
Confidence 13689999999999997 78889988876433 25777766665321100
Q ss_pred hccccCCcccccCCccccccCCCCHHHHHHHHHhhC--CCCeEEEEEeCChHHHHHHHHHHHhhccCCCceEEEEeecC
Q 002525 836 LHHAKNGVDVVSGTRVKSHFAKPNWRQVYKRIALHH--PDSRIGVFYCGAPALTKELRQLASDFSHKTSTKFEFHKENF 912 (912)
Q Consensus 836 l~~~~~~~d~~sg~~v~~~~gRPd~~~vl~~~~~~~--~~~~v~V~~CGP~~m~~~vr~~~~~~~~~~~~~~~fh~E~F 912 (912)
...||.+...+ .+..... ......||+|||++|++.+++.+.+..- ..-.+|.|.|
T Consensus 184 -----------------~~~gr~~~~~l-~~~l~~~~~~~~~~~vyiCGp~~m~~~v~~~L~~~Gv---~~~~i~~E~F 241 (352)
T TIGR02160 184 -----------------LLSGRLDGERL-AALLDSLIDVDRADEWFLCGPQAMVDDAEQALTGLGV---PAGRVHLELF 241 (352)
T ss_pred -----------------cccCccCHHHH-HHHHHhccCcccCCEEEEECCHHHHHHHHHHHHHcCC---CHHHEEEEec
Confidence 12356654322 2222211 1223579999999999999999887532 3345677766
No 28
>cd00322 FNR_like Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation in many organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal moeity may contain a flavin prosthetic group (as in
Probab=99.93 E-value=6.1e-25 Score=231.56 Aligned_cols=210 Identities=20% Similarity=0.292 Sum_probs=159.3
Q ss_pred EEEEecCCEEEEEEecCCCccccCccEEEEEeCCCCCCcccceeeeecCCC-CeEEEEEEec--CcchHHHHHHHhhccC
Q 002525 610 KVAVYPGNVLALHMSKPQGFKYKSGQYMFVNCAAVSPFEWHPFSITSSPGD-DYLSVHIRTL--GDWTRQLKTVFSEVCQ 686 (912)
Q Consensus 610 ~v~~~~~~v~~l~~~~p~~~~~~pGQyv~l~~p~~s~~e~HPFTIaS~p~~-~~l~l~Ir~~--G~~T~~L~~~~~~~~~ 686 (912)
+++.+++++..++++.|....|+||||+.|.+|..+...+|||||+|.|.+ +.++|+||.. |.+|+.|.++.
T Consensus 2 ~~~~~~~~~~~~~l~~~~~~~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~~~~~~~l~vk~~~~G~~s~~l~~~~----- 76 (223)
T cd00322 2 ATEDVTDDVRLFRLQLPNGFSFKPGQYVDLHLPGDGRGLRRAYSIASSPDEEGELELTVKIVPGGPFSAWLHDLK----- 76 (223)
T ss_pred ceEEecCCeEEEEEecCCCCCcCCCcEEEEEecCCCCcceeeeeccCCCCCCCeEEEEEEEeCCCchhhHHhcCC-----
Confidence 345667899999999887788999999999999766678999999999976 8999999999 99999997642
Q ss_pred CCCCCCCccchhhhccCCCCCCeEEEeCCCCCCCCCCCCCCEEEEEEcCcchhhHHHHHHHHHHhccccCcccccccccc
Q 002525 687 PAPAGKSGLLRAERENNSRGFPKILIDGPYGAPAQDYKKYDVVLLVGLGIGATPMISIVKDIINNMKSEDNNLESGLTVN 766 (912)
Q Consensus 687 ~~~~g~sg~~~~~~~~~~~~~~~v~IdGPYG~~~~~~~~y~~vllVagGiGITP~lsiL~~l~~~~~~~~~~~~~~~~~~ 766 (912)
.+.++.|.||||.+......++.+|+||||+||||++|+++++....
T Consensus 77 -------------------~G~~v~i~gP~G~~~~~~~~~~~~v~ia~G~Giap~~~~l~~~~~~~-------------- 123 (223)
T cd00322 77 -------------------PGDEVEVSGPGGDFFLPLEESGPVVLIAGGIGITPFRSMLRHLAADK-------------- 123 (223)
T ss_pred -------------------CCCEEEEECCCcccccCcccCCcEEEEecCCchhHHHHHHHHHHhhC--------------
Confidence 46789999999998544456789999999999999999999987642
Q ss_pred CCCCCCCCCcceEEEEEEeCCCCcHHHHHHHHHHHHhhcCCCcEEEEEeeccccCCCChhHHHHHHHhhhccccCCcccc
Q 002525 767 NNNKNSSFNTRKAYFYWVTREQGSFEWFKGIMNEVAEMDEKRVIELHNYCTSVYEEGDARSALIAMLQSLHHAKNGVDVV 846 (912)
Q Consensus 767 ~~~~~~~~~~~rv~l~W~~R~~~~~~wf~~~L~el~~~~~~~~i~i~iy~T~~~~~~d~~s~l~~~~q~l~~~~~~~d~~ 846 (912)
..++++|+|++|+.+++ +|.+++.++++.. .+++++.++++.......
T Consensus 124 --------~~~~v~l~~~~r~~~~~-~~~~el~~l~~~~--~~~~~~~~~~~~~~~~~~--------------------- 171 (223)
T cd00322 124 --------PGGEITLLYGARTPADL-LFLDELEELAKEG--PNFRLVLALSRESEAKLG--------------------- 171 (223)
T ss_pred --------CCCcEEEEEecCCHHHh-hHHHHHHHHHHhC--CCeEEEEEecCCCCCCCc---------------------
Confidence 14689999999999976 7888898887743 357777776653211000
Q ss_pred cCCccccccCCCCHHHHHHHHHhhCCCCeEEEEEeCChHHHHHHHHHHHhhc
Q 002525 847 SGTRVKSHFAKPNWRQVYKRIALHHPDSRIGVFYCGAPALTKELRQLASDFS 898 (912)
Q Consensus 847 sg~~v~~~~gRPd~~~vl~~~~~~~~~~~v~V~~CGP~~m~~~vr~~~~~~~ 898 (912)
..++......+..... ......||+|||++|++.+++.+.+..
T Consensus 172 -------~~~~~~~~~~~~~~~~--~~~~~~~yvCGp~~m~~~~~~~L~~~g 214 (223)
T cd00322 172 -------PGGRIDREAEILALLP--DDSGALVYICGPPAMAKAVREALVSLG 214 (223)
T ss_pred -------ccceeeHHHHHHhhcc--cccCCEEEEECCHHHHHHHHHHHHHcC
Confidence 0011111111221111 123467999999999999999887753
No 29
>PRK10684 HCP oxidoreductase, NADH-dependent; Provisional
Probab=99.93 E-value=1.3e-24 Score=243.35 Aligned_cols=224 Identities=17% Similarity=0.261 Sum_probs=167.5
Q ss_pred ceEEEEEEEecCCEEEEEEecCCCccccCccEEEEEeCCCCCCcccceeeeecCCC-CeEEEEEEec--CcchHHHHHHH
Q 002525 605 PVKILKVAVYPGNVLALHMSKPQGFKYKSGQYMFVNCAAVSPFEWHPFSITSSPGD-DYLSVHIRTL--GDWTRQLKTVF 681 (912)
Q Consensus 605 ~~~i~~v~~~~~~v~~l~~~~p~~~~~~pGQyv~l~~p~~s~~e~HPFTIaS~p~~-~~l~l~Ir~~--G~~T~~L~~~~ 681 (912)
.++|.++..+++++..+++..+..+.|+||||+.|.++.. ...+|||||+|.|.+ +.+.|+||.. |..|+.|.+.+
T Consensus 11 ~~~V~~i~~~t~~v~~l~l~~~~~~~f~pGQfv~l~~~~~-~~~~R~ySias~p~~~~~l~i~Vk~~~~G~~S~~L~~~l 89 (332)
T PRK10684 11 RMQVHSIVQETPDVWTISLICHDFYPYRAGQYALVSIRNS-AETLRAYTLSSTPGVSEFITLTVRRIDDGVGSQWLTRDV 89 (332)
T ss_pred eEEEEEEEccCCCeEEEEEcCCCCCCcCCCCEEEEEecCC-CEeeeeecccCCCCCCCcEEEEEEEcCCCcchhHHHhcC
Confidence 5678899999999999999887788999999999999853 245799999999974 6799999987 77888887543
Q ss_pred hhccCCCCCCCCccchhhhccCCCCCCeEEEeCCCCCCCCCCCCCCEEEEEEcCcchhhHHHHHHHHHHhccccCccccc
Q 002525 682 SEVCQPAPAGKSGLLRAERENNSRGFPKILIDGPYGAPAQDYKKYDVVLLVGLGIGATPMISIVKDIINNMKSEDNNLES 761 (912)
Q Consensus 682 ~~~~~~~~~g~sg~~~~~~~~~~~~~~~v~IdGPYG~~~~~~~~y~~vllVagGiGITP~lsiL~~l~~~~~~~~~~~~~ 761 (912)
+.+..+.|.||+|.+..+....+.+|||||||||||++|++++++.+.
T Consensus 90 -----------------------~~Gd~v~v~gP~G~f~l~~~~~~~~vliAgG~GItP~~sml~~~~~~~--------- 137 (332)
T PRK10684 90 -----------------------KRGDYLWLSDAMGEFTCDDKAEDKYLLLAAGCGVTPIMSMRRWLLKNR--------- 137 (332)
T ss_pred -----------------------CCCCEEEEeCCccccccCCCCCCcEEEEecCcCcchHHHHHHHHHhcC---------
Confidence 257899999999998644344578999999999999999999986541
Q ss_pred cccccCCCCCCCCCcceEEEEEEeCCCCcHHHHHHHHHHHHhhcCCCcEEEEEeeccccCCCChhHHHHHHHhhhccccC
Q 002525 762 GLTVNNNNKNSSFNTRKAYFYWVTREQGSFEWFKGIMNEVAEMDEKRVIELHNYCTSVYEEGDARSALIAMLQSLHHAKN 841 (912)
Q Consensus 762 ~~~~~~~~~~~~~~~~rv~l~W~~R~~~~~~wf~~~L~el~~~~~~~~i~i~iy~T~~~~~~d~~s~l~~~~q~l~~~~~ 841 (912)
..++++|+|++|+.+++ .|.++|+++++..+ .+.++++.++...
T Consensus 138 -------------~~~~v~l~y~~r~~~~~-~~~~el~~l~~~~~--~~~~~~~~~~~~~-------------------- 181 (332)
T PRK10684 138 -------------PQADVQVIFNVRTPQDV-IFADEWRQLKQRYP--QLNLTLVAENNAT-------------------- 181 (332)
T ss_pred -------------CCCCEEEEEeCCChHHh-hhHHHHHHHHHHCC--CeEEEEEeccCCC--------------------
Confidence 13689999999999987 68889988887544 3555554432100
Q ss_pred CcccccCCccccccCCCCHHHHHHHHHhhCCCCeEEEEEeCChHHHHHHHHHHHhhccCCCceEEEEeecC
Q 002525 842 GVDVVSGTRVKSHFAKPNWRQVYKRIALHHPDSRIGVFYCGAPALTKELRQLASDFSHKTSTKFEFHKENF 912 (912)
Q Consensus 842 ~~d~~sg~~v~~~~gRPd~~~vl~~~~~~~~~~~v~V~~CGP~~m~~~vr~~~~~~~~~~~~~~~fh~E~F 912 (912)
.| ...||.+.. ++.+..... ....||+|||++|++.+++++.+.. -..-.+|.|.|
T Consensus 182 -----~~----~~~grl~~~-~l~~~~~~~--~~~~vyiCGP~~m~~~v~~~l~~~G---v~~~~i~~E~F 237 (332)
T PRK10684 182 -----EG----FIAGRLTRE-LLQQAVPDL--ASRTVMTCGPAPYMDWVEQEVKALG---VTADRFFKEKF 237 (332)
T ss_pred -----CC----ccccccCHH-HHHHhcccc--cCCEEEEECCHHHHHHHHHHHHHcC---CCHHHeEeecc
Confidence 00 123666633 333322111 1246999999999999999887753 23445788877
No 30
>cd06196 FNR_like_1 Ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal region may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=99.93 E-value=1.6e-24 Score=228.23 Aligned_cols=204 Identities=21% Similarity=0.349 Sum_probs=155.4
Q ss_pred ceEEEEEEEecCCEEEEEEecCCCccccCccEEEEEeCCCC-CCcccceeeeecCCCCeEEEEEEec---CcchHHHHHH
Q 002525 605 PVKILKVAVYPGNVLALHMSKPQGFKYKSGQYMFVNCAAVS-PFEWHPFSITSSPGDDYLSVHIRTL---GDWTRQLKTV 680 (912)
Q Consensus 605 ~~~i~~v~~~~~~v~~l~~~~p~~~~~~pGQyv~l~~p~~s-~~e~HPFTIaS~p~~~~l~l~Ir~~---G~~T~~L~~~ 680 (912)
.++|++++.+++++.+++++.|..+.|+||||+.|.++..+ ..++|||||+|.|.++.+.|+||.. |++|+.|.++
T Consensus 2 ~~~v~~~~~~~~~~~~~~l~~~~~~~~~pGQ~v~l~~~~~~~~~~~r~ySi~s~~~~~~l~~~vk~~~~~g~~s~~l~~l 81 (218)
T cd06196 2 TVTLLSIEPVTHDVKRLRFDKPEGYDFTPGQATEVAIDKPGWRDEKRPFTFTSLPEDDVLEFVIKSYPDHDGVTEQLGRL 81 (218)
T ss_pred ceEEEEEEEcCCCeEEEEEcCCCcCCCCCCCEEEEEeeCCCCCccccccccccCCCCCeEEEEEEEcCCCCcHhHHHHhC
Confidence 46789999999999999999988899999999999997654 3578999999999889999999986 6788887542
Q ss_pred HhhccCCCCCCCCccchhhhccCCCCCCeEEEeCCCCCCCCCCCCCCEEEEEEcCcchhhHHHHHHHHHHhccccCcccc
Q 002525 681 FSEVCQPAPAGKSGLLRAERENNSRGFPKILIDGPYGAPAQDYKKYDVVLLVGLGIGATPMISIVKDIINNMKSEDNNLE 760 (912)
Q Consensus 681 ~~~~~~~~~~g~sg~~~~~~~~~~~~~~~v~IdGPYG~~~~~~~~y~~vllVagGiGITP~lsiL~~l~~~~~~~~~~~~ 760 (912)
. .+..+.+.||||.+.. .+.+|+||||+||||++|+++++....
T Consensus 82 ~------------------------~G~~v~i~gP~G~~~~----~~~~vlia~GtGiaP~~s~l~~~~~~~-------- 125 (218)
T cd06196 82 Q------------------------PGDTLLIEDPWGAIEY----KGPGVFIAGGAGITPFIAILRDLAAKG-------- 125 (218)
T ss_pred C------------------------CCCEEEEECCccceEe----cCceEEEecCCCcChHHHHHHHHHhCC--------
Confidence 1 4678999999998642 256899999999999999999987631
Q ss_pred ccccccCCCCCCCCCcceEEEEEEeCCCCcHHHHHHHHHHHHhhcCCCcEEEEEeeccccCCCChhHHHHHHHhhhcccc
Q 002525 761 SGLTVNNNNKNSSFNTRKAYFYWVTREQGSFEWFKGIMNEVAEMDEKRVIELHNYCTSVYEEGDARSALIAMLQSLHHAK 840 (912)
Q Consensus 761 ~~~~~~~~~~~~~~~~~rv~l~W~~R~~~~~~wf~~~L~el~~~~~~~~i~i~iy~T~~~~~~d~~s~l~~~~q~l~~~~ 840 (912)
..++++|+|++|+.+++ ++.++|+++.. ++++.++|+...+
T Consensus 126 --------------~~~~v~l~~~~r~~~~~-~~~~el~~l~~------~~~~~~~s~~~~~------------------ 166 (218)
T cd06196 126 --------------KLEGNTLIFANKTEKDI-ILKDELEKMLG------LKFINVVTDEKDP------------------ 166 (218)
T ss_pred --------------CCceEEEEEecCCHHHH-hhHHHHHHhhc------ceEEEEEcCCCCC------------------
Confidence 13679999999999886 78888877632 3445555532110
Q ss_pred CCcccccCCccccccCCCCHHHHHHHHHhhCCCCeEEEEEeCChHHHHHHHHHHHhhc
Q 002525 841 NGVDVVSGTRVKSHFAKPNWRQVYKRIALHHPDSRIGVFYCGAPALTKELRQLASDFS 898 (912)
Q Consensus 841 ~~~d~~sg~~v~~~~gRPd~~~vl~~~~~~~~~~~v~V~~CGP~~m~~~vr~~~~~~~ 898 (912)
....||.+ .+++++.... ....||+|||++|++++++.+.+..
T Consensus 167 -----------~~~~g~~~-~~~l~~~~~~---~~~~vyiCGp~~m~~~~~~~l~~~G 209 (218)
T cd06196 167 -----------GYAHGRID-KAFLKQHVTD---FNQHFYVCGPPPMEEAINGALKELG 209 (218)
T ss_pred -----------CeeeeEEC-HHHHHHhcCC---CCCEEEEECCHHHHHHHHHHHHHcC
Confidence 01124554 2344443221 1246999999999999999988764
No 31
>PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated
Probab=99.93 E-value=1.7e-24 Score=243.40 Aligned_cols=226 Identities=21% Similarity=0.332 Sum_probs=166.7
Q ss_pred ccceEEEEEEEecCCEEEEEEecC--CCccccCccEEEEEeCCCCCCcccceeeeecCCC-CeEEEEEEec--CcchHHH
Q 002525 603 IEPVKILKVAVYPGNVLALHMSKP--QGFKYKSGQYMFVNCAAVSPFEWHPFSITSSPGD-DYLSVHIRTL--GDWTRQL 677 (912)
Q Consensus 603 ~~~~~i~~v~~~~~~v~~l~~~~p--~~~~~~pGQyv~l~~p~~s~~e~HPFTIaS~p~~-~~l~l~Ir~~--G~~T~~L 677 (912)
...++|++++.+++++..|++..| ..+.|+||||+.|.+|.. ++|||||+|.|++ +.++|+||.. |.+|+.|
T Consensus 102 ~~~~~V~~~~~~~~d~~~l~l~~~~~~~~~~~pGQfv~l~~~~~---~~R~ySias~p~~~~~l~~~ik~~~~G~~s~~l 178 (339)
T PRK07609 102 KLPCRVASLERVAGDVMRLKLRLPATERLQYLAGQYIEFILKDG---KRRSYSIANAPHSGGPLELHIRHMPGGVFTDHV 178 (339)
T ss_pred EEEEEEEEEEcCCCcEEEEEEEcCCCCCCccCCCCeEEEECCCC---ceeeeecCCCCCCCCEEEEEEEecCCCccHHHH
Confidence 356789999999999999999876 357899999999999853 5899999999975 7999999976 7788888
Q ss_pred HHHHhhccCCCCCCCCccchhhhccCCCCCCeEEEeCCCCCCCCCCCCCCEEEEEEcCcchhhHHHHHHHHHHhccccCc
Q 002525 678 KTVFSEVCQPAPAGKSGLLRAERENNSRGFPKILIDGPYGAPAQDYKKYDVVLLVGLGIGATPMISIVKDIINNMKSEDN 757 (912)
Q Consensus 678 ~~~~~~~~~~~~~g~sg~~~~~~~~~~~~~~~v~IdGPYG~~~~~~~~y~~vllVagGiGITP~lsiL~~l~~~~~~~~~ 757 (912)
.+.+ ..+..+.|.||||.+..+....+.+||||||+||||++|++++++...
T Consensus 179 ~~~l-----------------------~~G~~v~v~gP~G~~~~~~~~~~~ivlIagGtGiaP~~s~l~~~~~~~----- 230 (339)
T PRK07609 179 FGAL-----------------------KERDILRIEGPLGTFFLREDSDKPIVLLASGTGFAPIKSIVEHLRAKG----- 230 (339)
T ss_pred HHhc-----------------------cCCCEEEEEcCceeEEecCCCCCCEEEEecCcChhHHHHHHHHHHhcC-----
Confidence 7644 146789999999998654345678999999999999999999997541
Q ss_pred cccccccccCCCCCCCCCcceEEEEEEeCCCCcHHHHHHHHHHHHhhcCCCcEEEEEeeccccCCCChhHHHHHHHhhhc
Q 002525 758 NLESGLTVNNNNKNSSFNTRKAYFYWVTREQGSFEWFKGIMNEVAEMDEKRVIELHNYCTSVYEEGDARSALIAMLQSLH 837 (912)
Q Consensus 758 ~~~~~~~~~~~~~~~~~~~~rv~l~W~~R~~~~~~wf~~~L~el~~~~~~~~i~i~iy~T~~~~~~d~~s~l~~~~q~l~ 837 (912)
..++++|+|++|+.+++ .+.+++.++++..+ .++++..+++...+ +.
T Consensus 231 -----------------~~~~i~l~~g~r~~~dl-~~~e~l~~~~~~~~--~~~~~~~~s~~~~~-~~------------ 277 (339)
T PRK07609 231 -----------------IQRPVTLYWGARRPEDL-YLSALAEQWAEELP--NFRYVPVVSDALDD-DA------------ 277 (339)
T ss_pred -----------------CCCcEEEEEecCChHHh-ccHHHHHHHHHhCC--CeEEEEEecCCCCC-CC------------
Confidence 13679999999999987 56777788776543 47777767653211 10
Q ss_pred cccCCcccccCCccccccCCCCHHHHHHHHHhhCCCCeEEEEEeCChHHHHHHHHHHHhhccCCCceEEEEeecC
Q 002525 838 HAKNGVDVVSGTRVKSHFAKPNWRQVYKRIALHHPDSRIGVFYCGAPALTKELRQLASDFSHKTSTKFEFHKENF 912 (912)
Q Consensus 838 ~~~~~~d~~sg~~v~~~~gRPd~~~vl~~~~~~~~~~~v~V~~CGP~~m~~~vr~~~~~~~~~~~~~~~fh~E~F 912 (912)
..| +.|+. .+.+.+.... .....||+|||++|++++++.+.+.. -..-.+|.|.|
T Consensus 278 --------~~g-----~~G~v--~~~~~~~~~~--~~~~~vy~CGp~~m~~~~~~~l~~~G---~~~~~i~~e~F 332 (339)
T PRK07609 278 --------WTG-----RTGFV--HQAVLEDFPD--LSGHQVYACGSPVMVYAARDDFVAAG---LPAEEFFADAF 332 (339)
T ss_pred --------ccC-----ccCcH--HHHHHhhccc--ccCCEEEEECCHHHHHHHHHHHHHcC---CCHHHeEEeec
Confidence 001 11222 2222111111 12357999999999999999887753 23445777876
No 32
>PRK13289 bifunctional nitric oxide dioxygenase/dihydropteridine reductase 2; Provisional
Probab=99.92 E-value=5.1e-24 Score=244.81 Aligned_cols=233 Identities=17% Similarity=0.259 Sum_probs=173.0
Q ss_pred cccceEEEEEEEecCCEEEEEEecCC---CccccCccEEEEEeCCCC--CCcccceeeeecCCCCeEEEEEEec--Ccch
Q 002525 602 SIEPVKILKVAVYPGNVLALHMSKPQ---GFKYKSGQYMFVNCAAVS--PFEWHPFSITSSPGDDYLSVHIRTL--GDWT 674 (912)
Q Consensus 602 ~~~~~~i~~v~~~~~~v~~l~~~~p~---~~~~~pGQyv~l~~p~~s--~~e~HPFTIaS~p~~~~l~l~Ir~~--G~~T 674 (912)
.++.++|+++..+++++..+++..+. .+.|+||||+.|.++..+ ..+||||||+|.|+++.+.|+||.. |..|
T Consensus 153 ~~~~~~V~~~~~~t~~~~~~~l~~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~R~ySias~p~~~~l~~~Vk~~~~G~~S 232 (399)
T PRK13289 153 GWRDFRVVKKVPESEVITSFYLEPVDGGPVADFKPGQYLGVRLDPEGEEYQEIRQYSLSDAPNGKYYRISVKREAGGKVS 232 (399)
T ss_pred CcEEEEEEEEEECCCCEEEEEEEcCCCCcCCCCCCCCeEEEEEecCCccccceeEEEeeeCCCCCeEEEEEEECCCCeeh
Confidence 45667899999999999999998764 268999999999996433 3467999999999888999999998 8899
Q ss_pred HHHHHHHhhccCCCCCCCCccchhhhccCCCCCCeEEEeCCCCCCCCCCCCCCEEEEEEcCcchhhHHHHHHHHHHhccc
Q 002525 675 RQLKTVFSEVCQPAPAGKSGLLRAERENNSRGFPKILIDGPYGAPAQDYKKYDVVLLVGLGIGATPMISIVKDIINNMKS 754 (912)
Q Consensus 675 ~~L~~~~~~~~~~~~~g~sg~~~~~~~~~~~~~~~v~IdGPYG~~~~~~~~y~~vllVagGiGITP~lsiL~~l~~~~~~ 754 (912)
..|.+.+ ..+..+.|.||||.+..+....+.+|||||||||||++|++++++...
T Consensus 233 ~~L~~~l-----------------------~~Gd~v~v~gP~G~f~l~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~-- 287 (399)
T PRK13289 233 NYLHDHV-----------------------NVGDVLELAAPAGDFFLDVASDTPVVLISGGVGITPMLSMLETLAAQQ-- 287 (399)
T ss_pred HHHhhcC-----------------------CCCCEEEEEcCccccccCCCCCCcEEEEecCccHHHHHHHHHHHHhcC--
Confidence 9987643 257889999999997654344678999999999999999999987541
Q ss_pred cCccccccccccCCCCCCCCCcceEEEEEEeCCCCcHHHHHHHHHHHHhhcCCCcEEEEEeeccccCCCChhHHHHHHHh
Q 002525 755 EDNNLESGLTVNNNNKNSSFNTRKAYFYWVTREQGSFEWFKGIMNEVAEMDEKRVIELHNYCTSVYEEGDARSALIAMLQ 834 (912)
Q Consensus 755 ~~~~~~~~~~~~~~~~~~~~~~~rv~l~W~~R~~~~~~wf~~~L~el~~~~~~~~i~i~iy~T~~~~~~d~~s~l~~~~q 834 (912)
..++++|+|++|+.+++ +|.++|+++++..+ .++++.++++.... +.
T Consensus 288 --------------------~~~~v~l~~~~r~~~~~-~~~~eL~~l~~~~~--~~~~~~~~s~~~~~-~~--------- 334 (399)
T PRK13289 288 --------------------PKRPVHFIHAARNGGVH-AFRDEVEALAARHP--NLKAHTWYREPTEQ-DR--------- 334 (399)
T ss_pred --------------------CCCCEEEEEEeCChhhc-hHHHHHHHHHHhCC--CcEEEEEECCCccc-cc---------
Confidence 14689999999999997 78999998876543 47777766643110 00
Q ss_pred hhccccCCcccccCCccccccCCCCHHHHHHHHHhhCCCCeEEEEEeCChHHHHHHHHHHHhhccCCCceEEEEeecC
Q 002525 835 SLHHAKNGVDVVSGTRVKSHFAKPNWRQVYKRIALHHPDSRIGVFYCGAPALTKELRQLASDFSHKTSTKFEFHKENF 912 (912)
Q Consensus 835 ~l~~~~~~~d~~sg~~v~~~~gRPd~~~vl~~~~~~~~~~~v~V~~CGP~~m~~~vr~~~~~~~~~~~~~~~fh~E~F 912 (912)
.+. ...+.||.+.+ ++.+... .....||+|||++|++.+++.+.+..- ..-.+|.|.|
T Consensus 335 ------------~~~-~~~~~g~i~~~-~l~~~~~---~~~~~vyiCGp~~m~~~v~~~L~~~Gv---~~~~I~~E~F 392 (399)
T PRK13289 335 ------------AGE-DFDSEGLMDLE-WLEAWLP---DPDADFYFCGPVPFMQFVAKQLLELGV---PEERIHYEFF 392 (399)
T ss_pred ------------cCC-cccccCcccHH-HHHhhCC---CCCCEEEEECCHHHHHHHHHHHHHcCC---CHHHeeeecc
Confidence 000 00123666533 3333221 123579999999999999999887533 2335677776
No 33
>PRK11872 antC anthranilate dioxygenase reductase; Provisional
Probab=99.92 E-value=3.3e-24 Score=240.69 Aligned_cols=224 Identities=17% Similarity=0.306 Sum_probs=165.9
Q ss_pred ccceEEEEEEEecCCEEEEEEecC---CCccccCccEEEEEeCCCCCCcccceeeeecCC-CCeEEEEEEec--CcchHH
Q 002525 603 IEPVKILKVAVYPGNVLALHMSKP---QGFKYKSGQYMFVNCAAVSPFEWHPFSITSSPG-DDYLSVHIRTL--GDWTRQ 676 (912)
Q Consensus 603 ~~~~~i~~v~~~~~~v~~l~~~~p---~~~~~~pGQyv~l~~p~~s~~e~HPFTIaS~p~-~~~l~l~Ir~~--G~~T~~ 676 (912)
...++|++++.+++++.+|++..+ +.+.|+||||+.|.+|.. -.+|||||+|.|. ++.+.|+||.. |.+|+.
T Consensus 106 ~~~~~V~~i~~~s~di~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~--~~~R~ySias~p~~~~~l~~~ik~~~~G~~s~~ 183 (340)
T PRK11872 106 KISGVVTAVELVSETTAILHLDASAHGRQLDFLPGQYARLQIPGT--DDWRSYSFANRPNATNQLQFLIRLLPDGVMSNY 183 (340)
T ss_pred eeeEEEEEEEecCCCeEEEEEEcCCCCCccCcCCCCEEEEEeCCC--CceeecccCCCCCCCCeEEEEEEECCCCcchhh
Confidence 345789999999999999999876 567899999999999864 3589999999996 57899999986 557888
Q ss_pred HHHHHhhccCCCCCCCCccchhhhccCCCCCCeEEEeCCCCCCCCCCCCCCEEEEEEcCcchhhHHHHHHHHHHhccccC
Q 002525 677 LKTVFSEVCQPAPAGKSGLLRAERENNSRGFPKILIDGPYGAPAQDYKKYDVVLLVGLGIGATPMISIVKDIINNMKSED 756 (912)
Q Consensus 677 L~~~~~~~~~~~~~g~sg~~~~~~~~~~~~~~~v~IdGPYG~~~~~~~~y~~vllVagGiGITP~lsiL~~l~~~~~~~~ 756 (912)
|.+.+ ..+..|.|.||||.+..+ ...+.+||||||+||||++|++++++...
T Consensus 184 L~~~l-----------------------~~G~~v~i~gP~G~f~l~-~~~~~~vliagGtGiaP~~s~l~~~~~~~---- 235 (340)
T PRK11872 184 LRERC-----------------------QVGDEILFEAPLGAFYLR-EVERPLVFVAGGTGLSAFLGMLDELAEQG---- 235 (340)
T ss_pred HhhCC-----------------------CCCCEEEEEcCcceeEeC-CCCCcEEEEeCCcCccHHHHHHHHHHHcC----
Confidence 86533 257889999999998643 23468999999999999999999987541
Q ss_pred ccccccccccCCCCCCCCCcceEEEEEEeCCCCcHHHHHHHHHHHHhhcCCCcEEEEEeeccccCCCChhHHHHHHHhhh
Q 002525 757 NNLESGLTVNNNNKNSSFNTRKAYFYWVTREQGSFEWFKGIMNEVAEMDEKRVIELHNYCTSVYEEGDARSALIAMLQSL 836 (912)
Q Consensus 757 ~~~~~~~~~~~~~~~~~~~~~rv~l~W~~R~~~~~~wf~~~L~el~~~~~~~~i~i~iy~T~~~~~~d~~s~l~~~~q~l 836 (912)
..++++|+|++|+.+++ .|.++|.++++..+ +++++..+++..+ +.
T Consensus 236 ------------------~~~~v~l~~g~r~~~dl-~~~~el~~~~~~~~--~~~~~~~~s~~~~--~~----------- 281 (340)
T PRK11872 236 ------------------CSPPVHLYYGVRHAADL-CELQRLAAYAERLP--NFRYHPVVSKASA--DW----------- 281 (340)
T ss_pred ------------------CCCcEEEEEecCChHHh-ccHHHHHHHHHHCC--CcEEEEEEeCCCC--cC-----------
Confidence 13579999999999997 68888988876544 4777776664311 00
Q ss_pred ccccCCcccccCCccccccCCCCHHHHHHHHHhhCCCCeEEEEEeCChHHHHHHHHHHHhhccCCCceEEEEeecC
Q 002525 837 HHAKNGVDVVSGTRVKSHFAKPNWRQVYKRIALHHPDSRIGVFYCGAPALTKELRQLASDFSHKTSTKFEFHKENF 912 (912)
Q Consensus 837 ~~~~~~~d~~sg~~v~~~~gRPd~~~vl~~~~~~~~~~~v~V~~CGP~~m~~~vr~~~~~~~~~~~~~~~fh~E~F 912 (912)
.| ..|+.. +.+..... ......||+||||+|++.+++.+.+.. -..-.+|.|.|
T Consensus 282 ----------~g-----~~g~v~--~~l~~~~l--~~~~~~vy~CGp~~mv~~~~~~L~~~G---v~~~~i~~E~F 335 (340)
T PRK11872 282 ----------QG-----KRGYIH--EHFDKAQL--RDQAFDMYLCGPPPMVEAVKQWLDEQA---LENYRLYYEKF 335 (340)
T ss_pred ----------CC-----ceeecc--HHHHHhhc--CcCCCEEEEeCCHHHHHHHHHHHHHcC---CCHHHEEEeee
Confidence 01 112222 22221111 112346999999999999999987653 33456888877
No 34
>cd06221 sulfite_reductase_like Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural similarity to ferredoxin reductase and sequence similarity to dihydroorotate dehydrogenases. Clostridium pasteurianum inducible dissimilatory type sulfite reductase is linked to ferredoxin and reduces NH2OH and SeO3 at a lesser rate than it's normal substate SO3(2-). Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+.
Probab=99.92 E-value=4.2e-24 Score=230.22 Aligned_cols=207 Identities=21% Similarity=0.335 Sum_probs=152.4
Q ss_pred EEEEEecCCEEEEEEecCC----CccccCccEEEEEeCCCCCCcccceeeeecCC-CCeEEEEEEecCcchHHHHHHHhh
Q 002525 609 LKVAVYPGNVLALHMSKPQ----GFKYKSGQYMFVNCAAVSPFEWHPFSITSSPG-DDYLSVHIRTLGDWTRQLKTVFSE 683 (912)
Q Consensus 609 ~~v~~~~~~v~~l~~~~p~----~~~~~pGQyv~l~~p~~s~~e~HPFTIaS~p~-~~~l~l~Ir~~G~~T~~L~~~~~~ 683 (912)
.+++.+++++.+++++.+. .++|+||||++|.+|..+ .|||||+|+|. ++.++|+||..|.+|+.|.++.
T Consensus 2 ~~i~~~t~~v~~~~l~~~~~~~~~~~~~pGQ~i~l~~~~~~---~~pySi~s~~~~~~~l~~~Ik~~G~~S~~L~~l~-- 76 (253)
T cd06221 2 VEVVDETEDIKTFTLRLEDDDEELFTFKPGQFVMLSLPGVG---EAPISISSDPTRRGPLELTIRRVGRVTEALHELK-- 76 (253)
T ss_pred ceEEeccCCceEEEEEeCCCccccCCcCCCCEEEEEcCCCC---ccceEecCCCCCCCeEEEEEEeCChhhHHHHcCC--
Confidence 5677788887777776544 378999999999998653 39999999997 6789999999999999886421
Q ss_pred ccCCCCCCCCccchhhhccCCCCCCeEEEeCCCCCCCC-CCCCCCEEEEEEcCcchhhHHHHHHHHHHhccccCcccccc
Q 002525 684 VCQPAPAGKSGLLRAERENNSRGFPKILIDGPYGAPAQ-DYKKYDVVLLVGLGIGATPMISIVKDIINNMKSEDNNLESG 762 (912)
Q Consensus 684 ~~~~~~~g~sg~~~~~~~~~~~~~~~v~IdGPYG~~~~-~~~~y~~vllVagGiGITP~lsiL~~l~~~~~~~~~~~~~~ 762 (912)
.+.++.|.||||.... +...++.+|+||||+||||++|+++++++...
T Consensus 77 ----------------------~G~~v~i~gP~G~~f~~~~~~~~~iv~IA~G~GitP~ls~l~~~~~~~~--------- 125 (253)
T cd06221 77 ----------------------PGDTVGLRGPFGNGFPVEEMKGKDLLLVAGGLGLAPLRSLINYILDNRE--------- 125 (253)
T ss_pred ----------------------CCCEEEEECCcCCCcccccccCCeEEEEccccchhHHHHHHHHHHhccc---------
Confidence 4678999999998532 22256899999999999999999999986421
Q ss_pred ccccCCCCCCCCCcceEEEEEEeCCCCcHHHHHHHHHHHHhhcCCCcEEEEEeeccccCCCChhHHHHHHHhhhccccCC
Q 002525 763 LTVNNNNKNSSFNTRKAYFYWVTREQGSFEWFKGIMNEVAEMDEKRVIELHNYCTSVYEEGDARSALIAMLQSLHHAKNG 842 (912)
Q Consensus 763 ~~~~~~~~~~~~~~~rv~l~W~~R~~~~~~wf~~~L~el~~~~~~~~i~i~iy~T~~~~~~d~~s~l~~~~q~l~~~~~~ 842 (912)
..++++|+|++|+.+++ ++.+.|+++++. .+++++.++++..+..
T Consensus 126 ------------~~~~i~Li~~~r~~~~~-~~~~~L~~l~~~---~~~~~~~~~s~~~~~~------------------- 170 (253)
T cd06221 126 ------------DYGKVTLLYGARTPEDL-LFKEELKEWAKR---SDVEVILTVDRAEEGW------------------- 170 (253)
T ss_pred ------------cCCcEEEEEecCChHHc-chHHHHHHHHhc---CCeEEEEEeCCCCCCc-------------------
Confidence 14689999999999997 688888888764 2467766665431100
Q ss_pred cccccCCccccccCCCCHHHHHHHHHhhCCCCeEEEEEeCChHHHHHHHHHHHhhcc
Q 002525 843 VDVVSGTRVKSHFAKPNWRQVYKRIALHHPDSRIGVFYCGAPALTKELRQLASDFSH 899 (912)
Q Consensus 843 ~d~~sg~~v~~~~gRPd~~~vl~~~~~~~~~~~v~V~~CGP~~m~~~vr~~~~~~~~ 899 (912)
.+ +.|+. .+.+.+.... + ....||+|||++|++.+++++.+..-
T Consensus 171 ----~~-----~~g~v--~~~l~~~~~~-~-~~~~vyicGp~~mv~~~~~~L~~~Gv 214 (253)
T cd06221 171 ----TG-----NVGLV--TDLLPELTLD-P-DNTVAIVCGPPIMMRFVAKELLKLGV 214 (253)
T ss_pred ----cC-----Ccccc--chhHHhcCCC-c-CCcEEEEECCHHHHHHHHHHHHHcCC
Confidence 00 11232 2233332211 1 24579999999999999999987643
No 35
>cd06183 cyt_b5_reduct_like Cytochrome b5 reductase catalyzes the reduction of 2 molecules of cytochrome b5 using NADH as an electron donor. Like ferredoxin reductases, these proteins have an N-terminal FAD binding subdomain and a C-terminal NADH binding subdomain, separated by a cleft, which accepts FAD. The NADH-binding moiety interacts with part of the FAD and resembles a Rossmann fold. However, NAD is bound differently than in canonical Rossmann fold proteins. Nitrate reductases, flavoproteins similar to pyridine nucleotide cytochrome reductases, catalyze the reduction of nitrate to nitrite. The enzyme can be divided into three functional fragments that bind the cofactors molybdopterin, heme-iron, and FAD/NADH.
Probab=99.92 E-value=1e-23 Score=224.28 Aligned_cols=216 Identities=16% Similarity=0.284 Sum_probs=161.5
Q ss_pred EEEEEEEecCCEEEEEEecCC---CccccCccEEEEEeCCCCCCcccceeeeecCCC-CeEEEEEEec--CcchHHHHHH
Q 002525 607 KILKVAVYPGNVLALHMSKPQ---GFKYKSGQYMFVNCAAVSPFEWHPFSITSSPGD-DYLSVHIRTL--GDWTRQLKTV 680 (912)
Q Consensus 607 ~i~~v~~~~~~v~~l~~~~p~---~~~~~pGQyv~l~~p~~s~~e~HPFTIaS~p~~-~~l~l~Ir~~--G~~T~~L~~~ 680 (912)
+|.+++.+++++..++++.+. .+.|+||||+.|.+|..+....|||||+|.|.+ +.+.|+||.. |..|+.|.++
T Consensus 2 ~v~~~~~~~~~~~~~~l~~~~~~~~~~~~pGq~v~l~~~~~~~~~~R~ysi~s~~~~~~~~~~~v~~~~~G~~s~~l~~~ 81 (234)
T cd06183 2 KLVSKEDISHDTRIFRFELPSPDQVLGLPVGQHVELKAPDDGEQVVRPYTPISPDDDKGYFDLLIKIYPGGKMSQYLHSL 81 (234)
T ss_pred EeEEeEecCCCEEEEEEECCCCCCcCCCCcccEEEEEecCCCcccccccccccCCCcCCEEEEEEEECCCCcchhHHhcC
Confidence 577888899999999999875 378999999999999766678999999998864 5799999986 7788887642
Q ss_pred HhhccCCCCCCCCccchhhhccCCCCCCeEEEeCCCCCCCCCCCCC-CEEEEEEcCcchhhHHHHHHHHHHhccccCccc
Q 002525 681 FSEVCQPAPAGKSGLLRAERENNSRGFPKILIDGPYGAPAQDYKKY-DVVLLVGLGIGATPMISIVKDIINNMKSEDNNL 759 (912)
Q Consensus 681 ~~~~~~~~~~g~sg~~~~~~~~~~~~~~~v~IdGPYG~~~~~~~~y-~~vllVagGiGITP~lsiL~~l~~~~~~~~~~~ 759 (912)
..+..+.|.||||.+..+.... +.+||||||+||||+++++++++.+..
T Consensus 82 ------------------------~~G~~v~i~gP~G~~~~~~~~~~~~~vliagGtGiaP~~~~l~~~~~~~~------ 131 (234)
T cd06183 82 ------------------------KPGDTVEIRGPFGKFEYKPNGKVKHIGMIAGGTGITPMLQLIRAILKDPE------ 131 (234)
T ss_pred ------------------------CCCCEEEEECCccceeecCCCCccEEEEEcCCcchhHHHHHHHHHHhCcC------
Confidence 1467899999999975433333 789999999999999999999875421
Q ss_pred cccccccCCCCCCCCCcceEEEEEEeCCCCcHHHHHHHHHHHHhhcCCCcEEEEEeeccccCCCChhHHHHHHHhhhccc
Q 002525 760 ESGLTVNNNNKNSSFNTRKAYFYWVTREQGSFEWFKGIMNEVAEMDEKRVIELHNYCTSVYEEGDARSALIAMLQSLHHA 839 (912)
Q Consensus 760 ~~~~~~~~~~~~~~~~~~rv~l~W~~R~~~~~~wf~~~L~el~~~~~~~~i~i~iy~T~~~~~~d~~s~l~~~~q~l~~~ 839 (912)
..++|+|+|++|+.+++ ++.++|+++++... ..++++.++|+.....
T Consensus 132 ---------------~~~~i~l~~~~r~~~~~-~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~---------------- 178 (234)
T cd06183 132 ---------------DKTKISLLYANRTEEDI-LLREELDELAKKHP-DRFKVHYVLSRPPEGW---------------- 178 (234)
T ss_pred ---------------cCcEEEEEEecCCHHHh-hhHHHHHHHHHhCc-ccEEEEEEEcCCCcCC----------------
Confidence 14689999999999986 88999988876422 3577777766431100
Q ss_pred cCCcccccCCccccccCCCCHHHHHHHHHhhCCCCeEEEEEeCChHHHH-HHHHHHHhhc
Q 002525 840 KNGVDVVSGTRVKSHFAKPNWRQVYKRIALHHPDSRIGVFYCGAPALTK-ELRQLASDFS 898 (912)
Q Consensus 840 ~~~~d~~sg~~v~~~~gRPd~~~vl~~~~~~~~~~~v~V~~CGP~~m~~-~vr~~~~~~~ 898 (912)
..+.||.+- .+++......+.....||+|||++|++ ++++.+.+..
T Consensus 179 ------------~~~~g~~~~-~~l~~~~~~~~~~~~~~~icGp~~~~~~~~~~~l~~~G 225 (234)
T cd06183 179 ------------KGGVGFITK-EMIKEHLPPPPSEDTLVLVCGPPPMIEGAVKGLLKELG 225 (234)
T ss_pred ------------ccccceECH-HHHHHhCCCCCCCCeEEEEECCHHHHHHHHHHHHHHcC
Confidence 112345442 233332211022346899999999999 9999987654
No 36
>PRK10926 ferredoxin-NADP reductase; Provisional
Probab=99.92 E-value=1.1e-23 Score=226.21 Aligned_cols=215 Identities=14% Similarity=0.211 Sum_probs=156.8
Q ss_pred ccceEEEEEEEecCCEEEEEEecCCCccccCccEEEEEeCCCCCCcccceeeeecCCCCeEEEEEEec--CcchHHHHHH
Q 002525 603 IEPVKILKVAVYPGNVLALHMSKPQGFKYKSGQYMFVNCAAVSPFEWHPFSITSSPGDDYLSVHIRTL--GDWTRQLKTV 680 (912)
Q Consensus 603 ~~~~~i~~v~~~~~~v~~l~~~~p~~~~~~pGQyv~l~~p~~s~~e~HPFTIaS~p~~~~l~l~Ir~~--G~~T~~L~~~ 680 (912)
|..++|.+++.+++++.++++..|. ..|+||||+.|.++..+...+|||||+|.|+++.++|+||.. |..|+.|.+
T Consensus 4 ~~~~~V~~i~~~t~~v~~l~l~~~~-~~~~pGQfv~l~~~~~g~~~~R~ySias~p~~~~l~~~ik~~~~G~~S~~L~~- 81 (248)
T PRK10926 4 WVTGKVTKVQNWTDALFSLTVHAPV-DPFTAGQFTKLGLEIDGERVQRAYSYVNAPDNPDLEFYLVTVPEGKLSPRLAA- 81 (248)
T ss_pred cEEEEEEEEEEcCCCeEEEEEeCCC-CCCCCCCEEEEEEecCCcEEEeeecccCCCCCCeEEEEEEEeCCCCcChHHHh-
Confidence 5678899999999999999998763 379999999999964444567999999999888999999987 889998864
Q ss_pred HhhccCCCCCCCCccchhhhccCCCCCCeEEEeCCCCCC-CCCCC-CCCEEEEEEcCcchhhHHHHHHHHHHhccccCcc
Q 002525 681 FSEVCQPAPAGKSGLLRAERENNSRGFPKILIDGPYGAP-AQDYK-KYDVVLLVGLGIGATPMISIVKDIINNMKSEDNN 758 (912)
Q Consensus 681 ~~~~~~~~~~g~sg~~~~~~~~~~~~~~~v~IdGPYG~~-~~~~~-~y~~vllVagGiGITP~lsiL~~l~~~~~~~~~~ 758 (912)
+ ..+..+.|.||+|.. ..+.. ..+.++||||||||||++|+++++....
T Consensus 82 l-----------------------~~Gd~v~i~gp~~g~f~l~~~~~~~~~vlIagGtGItP~~s~l~~~~~~~------ 132 (248)
T PRK10926 82 L-----------------------KPGDEVQVVSEAAGFFVLDEVPDCETLWMLATGTAIGPYLSILQEGKDLE------ 132 (248)
T ss_pred C-----------------------CCCCEEEEecCCCcceEccCCCCCCeEEEEEeeeeHHHHHHHHHhhHhhC------
Confidence 3 257899999988543 22221 3468999999999999999999875431
Q ss_pred ccccccccCCCCCCCCCcceEEEEEEeCCCCcHHHHHHHHHHHHhhcCCCcEEEEEeeccccCCCChhHHHHHHHhhhcc
Q 002525 759 LESGLTVNNNNKNSSFNTRKAYFYWVTREQGSFEWFKGIMNEVAEMDEKRVIELHNYCTSVYEEGDARSALIAMLQSLHH 838 (912)
Q Consensus 759 ~~~~~~~~~~~~~~~~~~~rv~l~W~~R~~~~~~wf~~~L~el~~~~~~~~i~i~iy~T~~~~~~d~~s~l~~~~q~l~~ 838 (912)
..++++|+|++|+.+++ .|.++|+++++..+ .+++++..+|+....+
T Consensus 133 ----------------~~~~v~l~~g~r~~~d~-~~~~el~~l~~~~~-~~~~v~~~~s~~~~~~--------------- 179 (248)
T PRK10926 133 ----------------RFKNLVLVHAARYAADL-SYLPLMQELEQRYE-GKLRIQTVVSRETAPG--------------- 179 (248)
T ss_pred ----------------CCCcEEEEEeCCcHHHH-HHHHHHHHHHHhCc-CCEEEEEEECCCCCCC---------------
Confidence 13679999999999887 68999998876532 2477777666531100
Q ss_pred ccCCcccccCCccccccCCCCHHHHHH-----HHHh-hCCCCeEEEEEeCChHHHHHHHHHHHhh
Q 002525 839 AKNGVDVVSGTRVKSHFAKPNWRQVYK-----RIAL-HHPDSRIGVFYCGAPALTKELRQLASDF 897 (912)
Q Consensus 839 ~~~~~d~~sg~~v~~~~gRPd~~~vl~-----~~~~-~~~~~~v~V~~CGP~~m~~~vr~~~~~~ 897 (912)
...||.+ +++. .... ........||+|||++|++.+++.+.+.
T Consensus 180 --------------~~~G~v~--~~i~~~~l~~~~~~~~~~~~~~vy~CGp~~Mv~~~~~~l~~~ 228 (248)
T PRK10926 180 --------------SLTGRVP--ALIESGELEAAVGLPMDAETSHVMLCGNPQMVRDTQQLLKET 228 (248)
T ss_pred --------------CcCCccc--hhhhcchHHHHhcCCCCccCCEEEEECCHHHHHHHHHHHHHh
Confidence 0013321 1111 1111 1111235799999999999999988764
No 37
>PRK08345 cytochrome-c3 hydrogenase subunit gamma; Provisional
Probab=99.92 E-value=1.7e-23 Score=229.77 Aligned_cols=225 Identities=20% Similarity=0.250 Sum_probs=155.5
Q ss_pred ccceEEEEEEEecCCEEE--EEEecC---CCccccCccEEEEEeCCCCCCcccceeeeecCC-CCeEEEEEEecCcchHH
Q 002525 603 IEPVKILKVAVYPGNVLA--LHMSKP---QGFKYKSGQYMFVNCAAVSPFEWHPFSITSSPG-DDYLSVHIRTLGDWTRQ 676 (912)
Q Consensus 603 ~~~~~i~~v~~~~~~v~~--l~~~~p---~~~~~~pGQyv~l~~p~~s~~e~HPFTIaS~p~-~~~l~l~Ir~~G~~T~~ 676 (912)
++.++|++++.+++++.. |.+..| ..+.|+||||+.|++|.. ..|||||+|.|. ++.++|+||..|.+|+.
T Consensus 5 ~~~~~V~~~~~~t~d~~~~~l~~~~~~~~~~~~~~pGQ~v~l~~~~~---~~~pySias~p~~~~~l~l~Ik~~G~~S~~ 81 (289)
T PRK08345 5 LHDAKILEVYDLTEREKLFLLRFEDPELAESFTFKPGQFVQVTIPGV---GEVPISICSSPTRKGFFELCIRRAGRVTTV 81 (289)
T ss_pred ceeEEEEEEEecCCCCCEEEEEEeCccccCCCCcCCCCEEEEEcCCC---CceeeEecCCCCCCCEEEEEEEeCChHHHH
Confidence 456889999999888554 444444 247799999999999864 348999999986 46899999999999998
Q ss_pred HHHHHhhccCCCCCCCCccchhhhccCCCCCCeEEEeCCCCCCC-CCCCCCCEEEEEEcCcchhhHHHHHHHHHHhcccc
Q 002525 677 LKTVFSEVCQPAPAGKSGLLRAERENNSRGFPKILIDGPYGAPA-QDYKKYDVVLLVGLGIGATPMISIVKDIINNMKSE 755 (912)
Q Consensus 677 L~~~~~~~~~~~~~g~sg~~~~~~~~~~~~~~~v~IdGPYG~~~-~~~~~y~~vllVagGiGITP~lsiL~~l~~~~~~~ 755 (912)
|.+ + ..+..+.|+||||.+. .+....+.++||||||||||++|++++++....
T Consensus 82 L~~-l-----------------------~~Gd~v~v~gP~G~~f~~~~~~~~~~llIAgGtGIaP~~s~l~~~l~~~~-- 135 (289)
T PRK08345 82 IHR-L-----------------------KEGDIVGVRGPYGNGFPVDEMEGMDLLLIAGGLGMAPLRSVLLYAMDNRW-- 135 (289)
T ss_pred HHh-C-----------------------CCCCEEEEeCCCCCCCCcccccCceEEEEecccchhHHHHHHHHHHhcCC--
Confidence 864 2 1467899999999843 222234689999999999999999999875421
Q ss_pred CccccccccccCCCCCCCCCcceEEEEEEeCCCCcHHHHHHHHHHHHhhcCCCcEEEEEeeccccCCCChhHHHHHHHhh
Q 002525 756 DNNLESGLTVNNNNKNSSFNTRKAYFYWVTREQGSFEWFKGIMNEVAEMDEKRVIELHNYCTSVYEEGDARSALIAMLQS 835 (912)
Q Consensus 756 ~~~~~~~~~~~~~~~~~~~~~~rv~l~W~~R~~~~~~wf~~~L~el~~~~~~~~i~i~iy~T~~~~~~d~~s~l~~~~q~ 835 (912)
..++++|+|++|+.+++ +|.++|.++++.. .+++++.++++..+ .+..
T Consensus 136 -------------------~~~~v~l~~~~r~~~d~-~~~deL~~l~~~~--~~~~~~~~~s~~~~-~~~~--------- 183 (289)
T PRK08345 136 -------------------KYGNITLIYGAKYYEDL-LFYDELIKDLAEA--ENVKIIQSVTRDPE-WPGC--------- 183 (289)
T ss_pred -------------------CCCcEEEEEecCCHHHh-hHHHHHHHHHhcC--CCEEEEEEecCCCC-CcCc---------
Confidence 13689999999999997 6888898886543 35888887775311 1000
Q ss_pred hccccCCcccccCCccccccCCCCHHHHHHHHHhhCCCCeEEEEEeCChHHHHHHHHHHHhhcc
Q 002525 836 LHHAKNGVDVVSGTRVKSHFAKPNWRQVYKRIALHHPDSRIGVFYCGAPALTKELRQLASDFSH 899 (912)
Q Consensus 836 l~~~~~~~d~~sg~~v~~~~gRPd~~~vl~~~~~~~~~~~v~V~~CGP~~m~~~vr~~~~~~~~ 899 (912)
. + ...|..-....|+. .+++.... ....+..||+|||++|++++++.+.+...
T Consensus 184 -~----~--~~~~~~~~~~~g~v--~~~~~~~~--~~~~~~~vyiCGP~~m~~~v~~~L~~~Gv 236 (289)
T PRK08345 184 -H----G--LPQGFIERVCKGVV--TDLFREAN--TDPKNTYAAICGPPVMYKFVFKELINRGY 236 (289)
T ss_pred -c----c--cccccccccccCch--hhhhhhcC--CCccccEEEEECCHHHHHHHHHHHHHcCC
Confidence 0 0 00000000111221 22222211 11123579999999999999998887643
No 38
>cd06218 DHOD_e_trans FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=99.92 E-value=1.2e-23 Score=225.74 Aligned_cols=209 Identities=20% Similarity=0.294 Sum_probs=155.1
Q ss_pred EEEEEecCCEEEEEEecCC-CccccCccEEEEEeCC-CCCCcccceeeeecCC-CCeEEEEEEecCcchHHHHHHHhhcc
Q 002525 609 LKVAVYPGNVLALHMSKPQ-GFKYKSGQYMFVNCAA-VSPFEWHPFSITSSPG-DDYLSVHIRTLGDWTRQLKTVFSEVC 685 (912)
Q Consensus 609 ~~v~~~~~~v~~l~~~~p~-~~~~~pGQyv~l~~p~-~s~~e~HPFTIaS~p~-~~~l~l~Ir~~G~~T~~L~~~~~~~~ 685 (912)
.+++.+++++.+|+++.|. .+.|+||||+.|.+|. .+++.+|||||+|.|. ++.++|+||..|.+|+.|.++
T Consensus 2 ~~~~~~t~~v~~l~l~~~~~~~~~~pGQ~v~l~~~~~~~~~~~R~ySi~s~~~~~~~l~l~v~~~G~~s~~l~~l----- 76 (246)
T cd06218 2 LSNREIADDIYRLVLEAPEIAAAAKPGQFVMLRVPDGSDPLLRRPISIHDVDPEEGTITLLYKVVGKGTRLLSEL----- 76 (246)
T ss_pred cceeEecCCeEEEEEeCcchhccCCCCcEEEEEeCCCCCCcCCCceEeeeccCCCCEEEEEEEEECcchHHHhcC-----
Confidence 5677889999999999887 6789999999999986 4567899999999884 788999999999999877532
Q ss_pred CCCCCCCCccchhhhccCCCCCCeEEEeCCCCCCCCCCCCCCEEEEEEcCcchhhHHHHHHHHHHhccccCccccccccc
Q 002525 686 QPAPAGKSGLLRAERENNSRGFPKILIDGPYGAPAQDYKKYDVVLLVGLGIGATPMISIVKDIINNMKSEDNNLESGLTV 765 (912)
Q Consensus 686 ~~~~~g~sg~~~~~~~~~~~~~~~v~IdGPYG~~~~~~~~y~~vllVagGiGITP~lsiL~~l~~~~~~~~~~~~~~~~~ 765 (912)
..+.++.|.||||........++.+||||||+||||++|+++++...
T Consensus 77 -------------------~~Gd~v~i~gP~G~~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~~~-------------- 123 (246)
T cd06218 77 -------------------KAGDELDVLGPLGNGFDLPDDDGKVLLVGGGIGIAPLLFLAKQLAER-------------- 123 (246)
T ss_pred -------------------CCCCEEEEEecCCCCcCCCCCCCcEEEEecccCHHHHHHHHHHHHhc--------------
Confidence 14678999999997433223578999999999999999999998652
Q ss_pred cCCCCCCCCCcceEEEEEEeCCCCcHHHHHHHHHHHHhhcCCCcEEEEEeeccccCCCChhHHHHHHHhhhccccCCccc
Q 002525 766 NNNNKNSSFNTRKAYFYWVTREQGSFEWFKGIMNEVAEMDEKRVIELHNYCTSVYEEGDARSALIAMLQSLHHAKNGVDV 845 (912)
Q Consensus 766 ~~~~~~~~~~~~rv~l~W~~R~~~~~~wf~~~L~el~~~~~~~~i~i~iy~T~~~~~~d~~s~l~~~~q~l~~~~~~~d~ 845 (912)
.++++|+|++|+.+++ .|.++|+++.. . +++ .+.. +.
T Consensus 124 ----------~~~v~l~~~~r~~~d~-~~~~eL~~l~~-----~--~~~-~~~~---~~--------------------- 160 (246)
T cd06218 124 ----------GIKVTVLLGFRSADDL-FLVEEFEALGA-----E--VYV-ATDD---GS--------------------- 160 (246)
T ss_pred ----------CCceEEEEEccchhhh-hhHHHHHhhCC-----c--EEE-EcCC---CC---------------------
Confidence 2579999999999986 67777776632 1 221 1211 00
Q ss_pred ccCCccccccCCCCHHHHHHHHHhhCCCCeEEEEEeCChHHHHHHHHHHHhhccCCCceEEEEeecC
Q 002525 846 VSGTRVKSHFAKPNWRQVYKRIALHHPDSRIGVFYCGAPALTKELRQLASDFSHKTSTKFEFHKENF 912 (912)
Q Consensus 846 ~sg~~v~~~~gRPd~~~vl~~~~~~~~~~~v~V~~CGP~~m~~~vr~~~~~~~~~~~~~~~fh~E~F 912 (912)
.+ .+..+.+.+.+..... ....||+|||++|++++++.+.+.. ....++-|++
T Consensus 161 -~~-------~~g~v~~~l~~~~~~~--~~~~vyiCGp~~mv~~~~~~L~~~G----v~~~~~~~~~ 213 (246)
T cd06218 161 -AG-------TKGFVTDLLKELLAEA--RPDVVYACGPEPMLKAVAELAAERG----VPCQVSLEER 213 (246)
T ss_pred -CC-------cceehHHHHHHHhhcc--CCCEEEEECCHHHHHHHHHHHHhcC----CCEEEEeccc
Confidence 00 0122344555443322 2358999999999999999987753 3466777764
No 39
>PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed
Probab=99.92 E-value=1.8e-23 Score=225.00 Aligned_cols=210 Identities=22% Similarity=0.345 Sum_probs=155.3
Q ss_pred ccceEEEEEEEecCCEEEEEEecCCCccccCccEEEEEeCCCCCCcccceeeeecCCCCeEEEEEEecCcchHHHHHHHh
Q 002525 603 IEPVKILKVAVYPGNVLALHMSKPQGFKYKSGQYMFVNCAAVSPFEWHPFSITSSPGDDYLSVHIRTLGDWTRQLKTVFS 682 (912)
Q Consensus 603 ~~~~~i~~v~~~~~~v~~l~~~~p~~~~~~pGQyv~l~~p~~s~~e~HPFTIaS~p~~~~l~l~Ir~~G~~T~~L~~~~~ 682 (912)
++.++|++++.+++++.++++..|..+.|+||||+.|.+|..+.+.+|||||+|.| ++.+.|+||..|.+|+.|.++
T Consensus 4 ~~~~~V~~~~~~t~d~~~l~l~~~~~~~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~-~~~l~l~Vk~~G~~t~~l~~l-- 80 (250)
T PRK00054 4 PENMKIVENKEIAPNIYTLVLDGEKVFDMKPGQFVMVWVPGVEPLLERPISISDID-KNEITILYRKVGEGTKKLSKL-- 80 (250)
T ss_pred ceEEEEEEEEEecCCeEEEEEeCccccCCCCCcEEEEEeCCCCCcCceeeEEeeeC-CCEEEEEEEEcChHHHHHhcC--
Confidence 45678999999999999999998777889999999999997766789999999999 889999999999999887542
Q ss_pred hccCCCCCCCCccchhhhccCCCCCCeEEEeCCCCCCCCCCCCCCEEEEEEcCcchhhHHHHHHHHHHhccccCcccccc
Q 002525 683 EVCQPAPAGKSGLLRAERENNSRGFPKILIDGPYGAPAQDYKKYDVVLLVGLGIGATPMISIVKDIINNMKSEDNNLESG 762 (912)
Q Consensus 683 ~~~~~~~~g~sg~~~~~~~~~~~~~~~v~IdGPYG~~~~~~~~y~~vllVagGiGITP~lsiL~~l~~~~~~~~~~~~~~ 762 (912)
..+.++.|.||||.+...-...+.+|+||||+||||++|+++++...
T Consensus 81 ----------------------~~G~~v~i~gP~G~~f~l~~~~~~~vlIagG~GiaP~~s~l~~~~~~----------- 127 (250)
T PRK00054 81 ----------------------KEGDELDIRGPLGNGFDLEEIGGKVLLVGGGIGVAPLYELAKELKKK----------- 127 (250)
T ss_pred ----------------------CCCCEEEEEcccCCCCCCCCCCCeEEEEeccccHHHHHHHHHHHHHc-----------
Confidence 14678999999998432223667999999999999999999998642
Q ss_pred ccccCCCCCCCCCcceEEEEEEeCCCCcHHHHHHHHHHHHhhcCCCcEEEEEeeccccCCCChhHHHHHHHhhhccccCC
Q 002525 763 LTVNNNNKNSSFNTRKAYFYWVTREQGSFEWFKGIMNEVAEMDEKRVIELHNYCTSVYEEGDARSALIAMLQSLHHAKNG 842 (912)
Q Consensus 763 ~~~~~~~~~~~~~~~rv~l~W~~R~~~~~~wf~~~L~el~~~~~~~~i~i~iy~T~~~~~~d~~s~l~~~~q~l~~~~~~ 842 (912)
.++++|+|.+|+.+++ +|.++|.++++ + +++.. ++.
T Consensus 128 -------------~~~v~l~~~~r~~~d~-~~~~el~~~~~------~----~~~~~--~~~------------------ 163 (250)
T PRK00054 128 -------------GVEVTTVLGARTKDEV-IFEEEFAKVGD------V----YVTTD--DGS------------------ 163 (250)
T ss_pred -------------CCcEEEEEEcCCHHHh-hhHHHHHhcCC------E----EEEec--CCC------------------
Confidence 2469999999999987 57776665321 1 12111 000
Q ss_pred cccccCCccccccCCCCHHHHHHHHHhhCCCCeEEEEEeCChHHHHHHHHHHHhhccCCCceEEEEeec
Q 002525 843 VDVVSGTRVKSHFAKPNWRQVYKRIALHHPDSRIGVFYCGAPALTKELRQLASDFSHKTSTKFEFHKEN 911 (912)
Q Consensus 843 ~d~~sg~~v~~~~gRPd~~~vl~~~~~~~~~~~v~V~~CGP~~m~~~vr~~~~~~~~~~~~~~~fh~E~ 911 (912)
.| .+..+.+++.... .. ...||+|||++|++++++.+.+.. .+..+..|.
T Consensus 164 ----~~-------~~g~v~~~l~~~~---~~-~~~vyvCGp~~m~~~v~~~l~~~G----v~~~~~~e~ 213 (250)
T PRK00054 164 ----YG-------FKGFVTDVLDELD---SE-YDAIYSCGPEIMMKKVVEILKEKK----VPAYVSLER 213 (250)
T ss_pred ----CC-------cccchhHhHhhhc---cC-CCEEEEeCCHHHHHHHHHHHHHcC----CcEEEEEcc
Confidence 00 0112233343332 11 236999999999999999888743 244555553
No 40
>PF08030 NAD_binding_6: Ferric reductase NAD binding domain; InterPro: IPR013121 This entry contains ferric reductase NAD binding proteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A.
Probab=99.91 E-value=3.4e-24 Score=213.67 Aligned_cols=153 Identities=28% Similarity=0.557 Sum_probs=97.6
Q ss_pred CCEEEEEEcCcchhhHHHHHHHHHHhccccCccccccccccCCCCCCCCCcceEEEEEEeCCCCcHHHHHHHHHHHHhhc
Q 002525 726 YDVVLLVGLGIGATPMISIVKDIINNMKSEDNNLESGLTVNNNNKNSSFNTRKAYFYWVTREQGSFEWFKGIMNEVAEMD 805 (912)
Q Consensus 726 y~~vllVagGiGITP~lsiL~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~l~W~~R~~~~~~wf~~~L~el~~~~ 805 (912)
|++|||||||+||||++|+++++++..+.. ...+++|+|+|++|+.++++||.+.|+++.+..
T Consensus 1 y~~vvlvAGG~GIt~~l~~l~~l~~~~~~~-----------------~~~~~~i~lvW~vR~~~~l~w~~~~l~~l~~~~ 63 (156)
T PF08030_consen 1 YDNVVLVAGGSGITPILPILRDLLQRQNRG-----------------SSRTRRIKLVWVVRDADELEWFSPELNELLELD 63 (156)
T ss_dssp SSEEEEEEEGGGHHHHHHHHHHHHHHHHTT----------------------EEEEEEEES-TTTTHHHHHHHHHHHHHH
T ss_pred CCEEEEEecCcCHHHHHHHHHHHHHhhccc-----------------cccccceEEEEeeCchhhhhhhhHHHHHHHHHh
Confidence 789999999999999999999999886532 124799999999999999999999999887765
Q ss_pred CCCcEEEEEeeccccCCCChhHHHHHHHhh--hccccCCcccccCCc-cccccCCCCHHHHHHHHHhhCCCCeEEEEEeC
Q 002525 806 EKRVIELHNYCTSVYEEGDARSALIAMLQS--LHHAKNGVDVVSGTR-VKSHFAKPNWRQVYKRIALHHPDSRIGVFYCG 882 (912)
Q Consensus 806 ~~~~i~i~iy~T~~~~~~d~~s~l~~~~q~--l~~~~~~~d~~sg~~-v~~~~gRPd~~~vl~~~~~~~~~~~v~V~~CG 882 (912)
....+++++|+|+....++........... ......++|..+... +.+++||||+++++++.......++++|++||
T Consensus 64 ~~~~~~~~iyvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~s~~~~~~~~~gRP~~~~~~~~~~~~~~~~~~~V~~CG 143 (156)
T PF08030_consen 64 RLGNVEVHIYVTRESSAPSNSDSSDSSSDGENSSSESSNVDSVSPTSNISVHYGRPDLDEILSEVASQQSSGRVAVFVCG 143 (156)
T ss_dssp HHTSEEEEEEETT-------------------------------------EEES---HHHHHHHHHHHSTT-EEEEEEES
T ss_pred ccccceEEEEEcCCcccccchhhhhcccccccccccccCCcccCCCcccceecCCCCHHHHHHHHHHhCCCCcEEEEEcC
Confidence 445799999999986554432222111110 111123456666665 88999999999999999777778899999999
Q ss_pred ChHHHHHHHHHHH
Q 002525 883 APALTKELRQLAS 895 (912)
Q Consensus 883 P~~m~~~vr~~~~ 895 (912)
|++|++++|++|+
T Consensus 144 P~~m~~~vr~~v~ 156 (156)
T PF08030_consen 144 PPSMVDDVRNAVN 156 (156)
T ss_dssp -HHHHHHHHHHH-
T ss_pred cHHHHHHHHHHhC
Confidence 9999999999874
No 41
>PRK05713 hypothetical protein; Provisional
Probab=99.91 E-value=2.1e-23 Score=231.69 Aligned_cols=212 Identities=16% Similarity=0.296 Sum_probs=157.5
Q ss_pred cceEEEEEEEecCCEEEEEEecCCCccccCccEEEEEeCCCCCCcccceeeeecCC-CCeEEEEEEec--CcchHHHHHH
Q 002525 604 EPVKILKVAVYPGNVLALHMSKPQGFKYKSGQYMFVNCAAVSPFEWHPFSITSSPG-DDYLSVHIRTL--GDWTRQLKTV 680 (912)
Q Consensus 604 ~~~~i~~v~~~~~~v~~l~~~~p~~~~~~pGQyv~l~~p~~s~~e~HPFTIaS~p~-~~~l~l~Ir~~--G~~T~~L~~~ 680 (912)
.+++|++++.+++++.+|+++.+..+.|+||||+.|.++. -.+|||||+|.|. ++.++|+||.. |.+|..|.+
T Consensus 92 ~~~~V~~~~~~t~dv~~l~l~~~~~~~~~~GQfv~l~~~~---~~~R~ySias~p~~~~~l~~~I~~~~~G~~s~~l~~- 167 (312)
T PRK05713 92 LPARVVALDWLGGDVLRLRLEPERPLRYRAGQHLVLWTAG---GVARPYSLASLPGEDPFLEFHIDCSRPGAFCDAARQ- 167 (312)
T ss_pred CCeEEEEEecCCCCEEEEEEccCCcCCcCCCCEEEEecCC---CcccccccCcCCCCCCeEEEEEEEcCCCccchhhhc-
Confidence 4688999999999999999998778899999999999864 2589999999986 47899999854 778887743
Q ss_pred HhhccCCCCCCCCccchhhhccCCCCCCeEEEeCCCCCCC-CCCC-CCCEEEEEEcCcchhhHHHHHHHHHHhccccCcc
Q 002525 681 FSEVCQPAPAGKSGLLRAERENNSRGFPKILIDGPYGAPA-QDYK-KYDVVLLVGLGIGATPMISIVKDIINNMKSEDNN 758 (912)
Q Consensus 681 ~~~~~~~~~~g~sg~~~~~~~~~~~~~~~v~IdGPYG~~~-~~~~-~y~~vllVagGiGITP~lsiL~~l~~~~~~~~~~ 758 (912)
+ +.+..+.|.||+|... .+.. ..+.+|||||||||||++|+++++++..
T Consensus 168 l-----------------------~~Gd~v~l~~p~gg~~~~~~~~~~~~~vlIAgGtGiaP~~s~l~~~~~~~------ 218 (312)
T PRK05713 168 L-----------------------QVGDLLRLGELRGGALHYDPDWQERPLWLLAAGTGLAPLWGILREALRQG------ 218 (312)
T ss_pred C-----------------------CCCCEEEEccCCCCceEecCCCCCCcEEEEecCcChhHHHHHHHHHHhcC------
Confidence 2 2578899999998532 1212 3468999999999999999999987542
Q ss_pred ccccccccCCCCCCCCCcceEEEEEEeCCCCcHHHHHHHHHHHHhhcCCCcEEEEEeeccccCCCChhHHHHHHHhhhcc
Q 002525 759 LESGLTVNNNNKNSSFNTRKAYFYWVTREQGSFEWFKGIMNEVAEMDEKRVIELHNYCTSVYEEGDARSALIAMLQSLHH 838 (912)
Q Consensus 759 ~~~~~~~~~~~~~~~~~~~rv~l~W~~R~~~~~~wf~~~L~el~~~~~~~~i~i~iy~T~~~~~~d~~s~l~~~~q~l~~ 838 (912)
..++++|+|++|+.+++ +|.++|+++++..+ +++++..++..
T Consensus 219 ----------------~~~~v~l~~g~r~~~d~-~~~~el~~l~~~~~--~~~~~~~~~~~------------------- 260 (312)
T PRK05713 219 ----------------HQGPIRLLHLARDSAGH-YLAEPLAALAGRHP--QLSVELVTAAQ------------------- 260 (312)
T ss_pred ----------------CCCcEEEEEEcCchHHh-hhHHHHHHHHHHCC--CcEEEEEECcc-------------------
Confidence 13679999999999997 78999999876543 36665433210
Q ss_pred ccCCcccccCCccccccCCCCHHHHHHHHHhhCCCCeEEEEEeCChHHHHHHHHHHHhhccCCCceEEEEeecC
Q 002525 839 AKNGVDVVSGTRVKSHFAKPNWRQVYKRIALHHPDSRIGVFYCGAPALTKELRQLASDFSHKTSTKFEFHKENF 912 (912)
Q Consensus 839 ~~~~~d~~sg~~v~~~~gRPd~~~vl~~~~~~~~~~~v~V~~CGP~~m~~~vr~~~~~~~~~~~~~~~fh~E~F 912 (912)
+.+++.++.. . .....||+|||++|++.+++.+.+.. -..-.+|.|.|
T Consensus 261 ---------------------~~~~l~~~~~-~-~~~~~vyiCGp~~mv~~~~~~L~~~G---v~~~~i~~e~F 308 (312)
T PRK05713 261 ---------------------LPAALAELRL-V-SRQTMALLCGSPASVERFARRLYLAG---LPRNQLLADVF 308 (312)
T ss_pred ---------------------hhhhhhhccC-C-CCCeEEEEeCCHHHHHHHHHHHHHcC---CCHHHeeeccc
Confidence 0111111110 1 12357999999999999999887653 23445777776
No 42
>COG1018 Hmp Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 [Energy production and conversion]
Probab=99.91 E-value=9.8e-23 Score=219.16 Aligned_cols=222 Identities=18% Similarity=0.297 Sum_probs=173.2
Q ss_pred cccceEEEEEEEecCCEEEEEEecCCCcc--ccCccEEEEEeCCCCCCcccceeeeecCCCC-eEEEEEEec--CcchHH
Q 002525 602 SIEPVKILKVAVYPGNVLALHMSKPQGFK--YKSGQYMFVNCAAVSPFEWHPFSITSSPGDD-YLSVHIRTL--GDWTRQ 676 (912)
Q Consensus 602 ~~~~~~i~~v~~~~~~v~~l~~~~p~~~~--~~pGQyv~l~~p~~s~~e~HPFTIaS~p~~~-~l~l~Ir~~--G~~T~~ 676 (912)
.+..++|.+++..+++++++++..|.+.. |+||||+.|.++..+...++.|||+|+|.++ .+.|.||+. |..|+.
T Consensus 4 ~~~~~~V~~v~~~t~di~sf~l~~~~g~~~~f~pGQ~i~v~l~~~~~~~~R~YSl~s~p~~~~~~~isVk~~~~G~~S~~ 83 (266)
T COG1018 4 GFRRVTVTSVEPETDDVFSFTLEPPDGLRLDFEPGQYITVGLPNGGEPLLRAYSLSSAPDEDSLYRISVKREDGGGGSNW 83 (266)
T ss_pred ceEEEEEEEEEEecCceEEEEEEcCCCCccccCCCCeEEEEecCCCceeeEEEEeccCCCCCceEEEEEEEeCCCcccHH
Confidence 35678999999999999999999998875 9999999999998777899999999999876 899999988 789999
Q ss_pred HHHHHhhccCCCCCCCCccchhhhccCCCCCCeEEEeCCCCCCCCCCCCCCEEEEEEcCcchhhHHHHHHHHHHhccccC
Q 002525 677 LKTVFSEVCQPAPAGKSGLLRAERENNSRGFPKILIDGPYGAPAQDYKKYDVVLLVGLGIGATPMISIVKDIINNMKSED 756 (912)
Q Consensus 677 L~~~~~~~~~~~~~g~sg~~~~~~~~~~~~~~~v~IdGPYG~~~~~~~~y~~vllVagGiGITP~lsiL~~l~~~~~~~~ 756 (912)
|++.+ ..++++.|.+|.|.+..+....+.++|+||||||||++||++++....
T Consensus 84 Lh~~l-----------------------k~Gd~l~v~~P~G~F~l~~~~~~~~llla~G~GITP~lSml~~~~~~~---- 136 (266)
T COG1018 84 LHDHL-----------------------KVGDTLEVSAPAGDFVLDDLPERKLLLLAGGIGITPFLSMLRTLLDRG---- 136 (266)
T ss_pred HHhcC-----------------------CCCCEEEEecCCCCccCCCCCCCcEEEEeccccHhHHHHHHHHHHHhC----
Confidence 98765 258899999999999766545557999999999999999999987652
Q ss_pred ccccccccccCCCCCCCCCcceEEEEEEeCCCCcHHHHHHHHHHHHhhcCCCcEEEEEeeccccCCCChhHHHHHHHhhh
Q 002525 757 NNLESGLTVNNNNKNSSFNTRKAYFYWVTREQGSFEWFKGIMNEVAEMDEKRVIELHNYCTSVYEEGDARSALIAMLQSL 836 (912)
Q Consensus 757 ~~~~~~~~~~~~~~~~~~~~~rv~l~W~~R~~~~~~wf~~~L~el~~~~~~~~i~i~iy~T~~~~~~d~~s~l~~~~q~l 836 (912)
. .+|.|++++|+.+++ -|+++ ++++...++ ...++.|+... +
T Consensus 137 ------------------~-~~v~l~h~~R~~~~~-af~de-~~l~~~~~~-~~~~~~~~~~~----~------------ 178 (266)
T COG1018 137 ------------------P-ADVVLVHAARTPADL-AFRDE-LELAAELPN-ALLLGLYTERG----K------------ 178 (266)
T ss_pred ------------------C-CCEEEEEecCChhhc-chhhH-HHHHhhCCC-CeeEEEEEecC----C------------
Confidence 2 579999999999998 57777 777655442 34444443200 0
Q ss_pred ccccCCcccccCCccccccCCCCHHHHHHHHHhhCCCCeEEEEEeCChHHHHHHHHHHHhhccCCCceEEEEeecC
Q 002525 837 HHAKNGVDVVSGTRVKSHFAKPNWRQVYKRIALHHPDSRIGVFYCGAPALTKELRQLASDFSHKTSTKFEFHKENF 912 (912)
Q Consensus 837 ~~~~~~~d~~sg~~v~~~~gRPd~~~vl~~~~~~~~~~~v~V~~CGP~~m~~~vr~~~~~~~~~~~~~~~fh~E~F 912 (912)
.-||++...+..... +.. ..+|+|||.+|++.++..+.++... .-.+|.|.|
T Consensus 179 -----------------~~g~~~~~~l~~~~~---~~~-r~~y~CGp~~fm~av~~~l~~~g~~---~~~vh~E~F 230 (266)
T COG1018 179 -----------------LQGRIDVSRLLSAAP---DGG-REVYLCGPGPFMQAVRLALEALGVP---DDRVHLEGF 230 (266)
T ss_pred -----------------ccccccHHHHhccCC---CCC-CEEEEECCHHHHHHHHHHHHHcCCC---hhcEEEeec
Confidence 124666554332211 122 5799999999999999998876543 456888887
No 43
>cd06185 PDR_like Phthalate dioxygenase reductase (PDR) is an FMN-dependent reductase that mediates electron transfer from NADH to FMN to an iron sulfur cluster. PDR has an an N-terminal ferrredoxin reductase (FNR)-like NAD(H) binding domain and a C-terminal iron-sulfur [2Fe-2S] cluster domain. Although structurally homologous to FNR, PDR binds FMN rather than FAD in it's FNR-like domain. Electron transfer between pyrimidines and iron-sulfur clusters (Rieske center [2Fe-2S]) or heme groups is mediated by flavins in respiration, photosynthesis, and oxygenase systems. Type I dioxygenase systems, including the hydroxylate phthalate system, have 2 components, a monomeric reductase consisting of a flavin and a 2Fe-2S center and a multimeric oxygenase. In contrast to other Rieske dioxygenases the ferredoxin like domain is C-, not N-terminal.
Probab=99.91 E-value=5.9e-23 Score=215.15 Aligned_cols=202 Identities=15% Similarity=0.249 Sum_probs=152.2
Q ss_pred EEEEecCCEEEEEEecCCCc---cccCccEEEEEeCCCCCCcccceeeeecCCC-CeEEEEEEecCc---chHHHHHHHh
Q 002525 610 KVAVYPGNVLALHMSKPQGF---KYKSGQYMFVNCAAVSPFEWHPFSITSSPGD-DYLSVHIRTLGD---WTRQLKTVFS 682 (912)
Q Consensus 610 ~v~~~~~~v~~l~~~~p~~~---~~~pGQyv~l~~p~~s~~e~HPFTIaS~p~~-~~l~l~Ir~~G~---~T~~L~~~~~ 682 (912)
+++.+.+++++++++.|... .|+||||+.|++|. ..+|||||+|.|.+ +.+.|+||..++ .|..|.+..
T Consensus 2 ~~~~~~~~~~~~~l~~~~~~~~~~~~pGQ~~~l~~~~---~~~r~ySi~s~~~~~~~l~~~v~~~~~g~~~s~~l~~~~- 77 (211)
T cd06185 2 RIRDEAPDIRSFELEAPDGAPLPAFEPGAHIDVHLPN---GLVRQYSLCGDPADRDRYRIAVLREPASRGGSRYMHELL- 77 (211)
T ss_pred ceEEcCCCeEEEEEEeCCCCcCCCCCCCceEEEEcCC---CCceeeeccCCCCCCCEEEEEEEeccCCCchHHHHHhcC-
Confidence 46678899999999998763 89999999999986 36899999999875 889999998753 577776533
Q ss_pred hccCCCCCCCCccchhhhccCCCCCCeEEEeCCCCCCCCCCCCCCEEEEEEcCcchhhHHHHHHHHHHhccccCcccccc
Q 002525 683 EVCQPAPAGKSGLLRAERENNSRGFPKILIDGPYGAPAQDYKKYDVVLLVGLGIGATPMISIVKDIINNMKSEDNNLESG 762 (912)
Q Consensus 683 ~~~~~~~~g~sg~~~~~~~~~~~~~~~v~IdGPYG~~~~~~~~y~~vllVagGiGITP~lsiL~~l~~~~~~~~~~~~~~ 762 (912)
+.+.++.|.||||.+..+ ...+.+++||||+||||++++++++...
T Consensus 78 ----------------------~~Gd~v~i~gP~g~f~~~-~~~~~~v~ia~GtGiap~~~il~~~~~~----------- 123 (211)
T cd06185 78 ----------------------RVGDELEVSAPRNLFPLD-EAARRHLLIAGGIGITPILSMARALAAR----------- 123 (211)
T ss_pred ----------------------CCCCEEEEcCCccCCcCC-CCCCcEEEEeccchHhHHHHHHHHHHhC-----------
Confidence 247789999999987543 2356899999999999999999988542
Q ss_pred ccccCCCCCCCCCcceEEEEEEeCCCCcHHHHHHHHHHHHhhcCCCcEEEEEeeccccCCCChhHHHHHHHhhhccccCC
Q 002525 763 LTVNNNNKNSSFNTRKAYFYWVTREQGSFEWFKGIMNEVAEMDEKRVIELHNYCTSVYEEGDARSALIAMLQSLHHAKNG 842 (912)
Q Consensus 763 ~~~~~~~~~~~~~~~rv~l~W~~R~~~~~~wf~~~L~el~~~~~~~~i~i~iy~T~~~~~~d~~s~l~~~~q~l~~~~~~ 842 (912)
.++++++|.+|+.+++ .+.+.|++++ ...+ +++.+..
T Consensus 124 -------------~~~v~l~~~~r~~~~~-~~~~~l~~~~----~~~~--~~~~~~~----------------------- 160 (211)
T cd06185 124 -------------GADFELHYAGRSREDA-AFLDELAALP----GDRV--HLHFDDE----------------------- 160 (211)
T ss_pred -------------CCCEEEEEEeCCCcch-hHHHHHhhhc----CCcE--EEEECCC-----------------------
Confidence 2579999999999987 4667776665 1233 3333321
Q ss_pred cccccCCccccccCCCCHHHHHHHHHhhCCCCeEEEEEeCChHHHHHHHHHHHhhccCCCceEEEEeecC
Q 002525 843 VDVVSGTRVKSHFAKPNWRQVYKRIALHHPDSRIGVFYCGAPALTKELRQLASDFSHKTSTKFEFHKENF 912 (912)
Q Consensus 843 ~d~~sg~~v~~~~gRPd~~~vl~~~~~~~~~~~v~V~~CGP~~m~~~vr~~~~~~~~~~~~~~~fh~E~F 912 (912)
.+|+++.+++.+.. ....||+|||+.|++++++.+.+..- ..-.+|.|.|
T Consensus 161 ------------~~~~~~~~~~~~~~-----~~~~vyicGp~~m~~~~~~~l~~~gv---~~~~i~~e~F 210 (211)
T cd06185 161 ------------GGRLDLAALLAAPP-----AGTHVYVCGPEGMMDAVRAAAAALGW---PEARLHFERF 210 (211)
T ss_pred ------------CCccCHHHHhccCC-----CCCEEEEECCHHHHHHHHHHHHHcCC---ChhheEeeec
Confidence 03556666655421 13579999999999999999987633 3456888887
No 44
>PLN03116 ferredoxin--NADP+ reductase; Provisional
Probab=99.91 E-value=1e-22 Score=225.38 Aligned_cols=223 Identities=14% Similarity=0.154 Sum_probs=157.1
Q ss_pred cceEEEEEEEec-----CCEEEEEEecCCCccccCccEEEEEeCCCC------CCcccceeeeecCCC-----CeEEEEE
Q 002525 604 EPVKILKVAVYP-----GNVLALHMSKPQGFKYKSGQYMFVNCAAVS------PFEWHPFSITSSPGD-----DYLSVHI 667 (912)
Q Consensus 604 ~~~~i~~v~~~~-----~~v~~l~~~~p~~~~~~pGQyv~l~~p~~s------~~e~HPFTIaS~p~~-----~~l~l~I 667 (912)
...+|++++.+. ++|.+|+++.+..+.|+||||+.|..|... +..+++|||+|.|.+ ..++|+|
T Consensus 25 ~~~~V~~i~~~~~p~~~~~v~~l~l~~~~~~~f~aGQy~~l~~~~~~~~~~g~~~~~R~YSIaS~p~~~~~~~~~lel~V 104 (307)
T PLN03116 25 YTATIVSVERIVGPKAPGETCHIVIDHGGNVPYWEGQSYGVIPPGTNPKKPGAPHNVRLYSIASTRYGDDFDGKTASLCV 104 (307)
T ss_pred EEEEEEeeEEcccCCCCCceEEEEEecCCCCceecCceEeeeCCCCChhhcCCcCCceeEEecCCCCCcCCCCCEEEEEE
Confidence 467889999887 899999999988999999999999877431 235899999999942 2799999
Q ss_pred Eec---------------CcchHHHHHHHhhccCCCCCCCCccchhhhccCCCCCCeEEEeCCCCCCCCCC--CCCCEEE
Q 002525 668 RTL---------------GDWTRQLKTVFSEVCQPAPAGKSGLLRAERENNSRGFPKILIDGPYGAPAQDY--KKYDVVL 730 (912)
Q Consensus 668 r~~---------------G~~T~~L~~~~~~~~~~~~~g~sg~~~~~~~~~~~~~~~v~IdGPYG~~~~~~--~~y~~vl 730 (912)
|.. |-.|..|.+ + ..+..+.|.||+|.+.... ...+.+|
T Consensus 105 r~~~~~~~~~~~~~~~~~G~~S~~L~~-l-----------------------~~Gd~v~v~gP~G~f~~~~~~~~~~~~v 160 (307)
T PLN03116 105 RRAVYYDPETGKEDPAKKGVCSNFLCD-A-----------------------KPGDKVQITGPSGKVMLLPEEDPNATHI 160 (307)
T ss_pred EEEEEecCCcCCCCCccCcchhhhHhh-C-----------------------CCCCEEEEEEecCCceeCCCCCCCCcEE
Confidence 964 556777765 3 2578999999999875321 3346899
Q ss_pred EEEcCcchhhHHHHHHHHHHhccccCccccccccccCCCCCCCCCcceEEEEEEeCCCCcHHHHHHHHHHHHhhcCCCcE
Q 002525 731 LVGLGIGATPMISIVKDIINNMKSEDNNLESGLTVNNNNKNSSFNTRKAYFYWVTREQGSFEWFKGIMNEVAEMDEKRVI 810 (912)
Q Consensus 731 lVagGiGITP~lsiL~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~l~W~~R~~~~~~wf~~~L~el~~~~~~~~i 810 (912)
|||||+||||++||+++++....... ....+++|+|++|+.+++ .|.++|+++++..+ .++
T Consensus 161 lIAgGtGIaP~~sml~~~l~~~~~~~-----------------~~~~~v~L~~g~R~~~d~-~~~deL~~l~~~~~-~~~ 221 (307)
T PLN03116 161 MVATGTGIAPFRGFLRRMFMEDVPAF-----------------KFGGLAWLFLGVANSDSL-LYDDEFERYLKDYP-DNF 221 (307)
T ss_pred EEecCccHHHHHHHHHHHHhhccccc-----------------cCCCcEEEEEecCCcccc-hHHHHHHHHHHhCC-CcE
Confidence 99999999999999999875421100 013579999999999987 68899988876543 257
Q ss_pred EEEEeeccccCCCChhHHHHHHHhhhccccCCcccccCCccccccCCCCHHHHHHHHHhh---CCCCeEEEEEeCChHHH
Q 002525 811 ELHNYCTSVYEEGDARSALIAMLQSLHHAKNGVDVVSGTRVKSHFAKPNWRQVYKRIALH---HPDSRIGVFYCGAPALT 887 (912)
Q Consensus 811 ~i~iy~T~~~~~~d~~s~l~~~~q~l~~~~~~~d~~sg~~v~~~~gRPd~~~vl~~~~~~---~~~~~v~V~~CGP~~m~ 887 (912)
+++..+++..+... | ++-.+.+.+...... .......||+|||++|+
T Consensus 222 ~~~~~~sr~~~~~~-----------------------g-------~~g~v~~~l~~~~~~~~~~~~~~~~vYiCGp~~mv 271 (307)
T PLN03116 222 RYDYALSREQKNKK-----------------------G-------GKMYVQDKIEEYSDEIFKLLDNGAHIYFCGLKGMM 271 (307)
T ss_pred EEEEEEccCCcccC-----------------------C-------CccchhhHHHHHHHHHHhhhcCCcEEEEeCCHHHH
Confidence 77776664321100 0 111122333322110 01123579999999999
Q ss_pred HHHHHHHHhhcc
Q 002525 888 KELRQLASDFSH 899 (912)
Q Consensus 888 ~~vr~~~~~~~~ 899 (912)
+.+++++.+...
T Consensus 272 ~~v~~~L~~~~~ 283 (307)
T PLN03116 272 PGIQDTLKRVAE 283 (307)
T ss_pred HHHHHHHHHHHH
Confidence 999887777543
No 45
>cd06219 DHOD_e_trans_like1 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD,
Probab=99.90 E-value=1.1e-22 Score=218.66 Aligned_cols=198 Identities=22% Similarity=0.293 Sum_probs=145.5
Q ss_pred EEEEEEEecCCEEEEEEecCCC-ccccCccEEEEEeCCCCCCcccceeeeecC-CCCeEEEEEEecCcchHHHHHHHhhc
Q 002525 607 KILKVAVYPGNVLALHMSKPQG-FKYKSGQYMFVNCAAVSPFEWHPFSITSSP-GDDYLSVHIRTLGDWTRQLKTVFSEV 684 (912)
Q Consensus 607 ~i~~v~~~~~~v~~l~~~~p~~-~~~~pGQyv~l~~p~~s~~e~HPFTIaS~p-~~~~l~l~Ir~~G~~T~~L~~~~~~~ 684 (912)
+|++++.+++++..++++.|.. ..|+||||++|+++.. .++|||||+|+| +++.++|+||..|+.|..|.++.
T Consensus 2 ~v~~~~~~t~d~~~~~l~~~~~~~~~~pGQf~~l~~~~~--~~~~pySi~s~~~~~~~~~~~vk~~G~~t~~l~~l~--- 76 (248)
T cd06219 2 KILEKEELAPNVKLFEIEAPLIAKKAKPGQFVIVRADEK--GERIPLTIADWDPEKGTITIVVQVVGKSTRELATLE--- 76 (248)
T ss_pred EEEEEEEeCCCeEEEEEEChhhhccCCCCcEEEEEcCCC--CCccceEeEEEcCCCCEEEEEEEeCCchHHHHHhcC---
Confidence 5788889999999999998753 5799999999998643 468999999986 46789999999999998775422
Q ss_pred cCCCCCCCCccchhhhccCCCCCCeE-EEeCCCCCCCCCCCCCCEEEEEEcCcchhhHHHHHHHHHHhccccCccccccc
Q 002525 685 CQPAPAGKSGLLRAERENNSRGFPKI-LIDGPYGAPAQDYKKYDVVLLVGLGIGATPMISIVKDIINNMKSEDNNLESGL 763 (912)
Q Consensus 685 ~~~~~~g~sg~~~~~~~~~~~~~~~v-~IdGPYG~~~~~~~~y~~vllVagGiGITP~lsiL~~l~~~~~~~~~~~~~~~ 763 (912)
.+..+ .|+||||.+.. ...++.+||||||+||||++|+++++...
T Consensus 77 ---------------------~G~~v~~i~gP~G~~~~-~~~~~~~lliagG~GiaP~~~~l~~~~~~------------ 122 (248)
T cd06219 77 ---------------------EGDKIHDVVGPLGKPSE-IENYGTVVFVGGGVGIAPIYPIAKALKEA------------ 122 (248)
T ss_pred ---------------------CCCEeeeeecCCCCCee-cCCCCeEEEEeCcccHHHHHHHHHHHHHc------------
Confidence 46778 69999999753 23467899999999999999999997643
Q ss_pred cccCCCCCCCCCcceEEEEEEeCCCCcHHHHHHHHHHHHhhcCCCcEEEEEeeccccCCCChhHHHHHHHhhhccccCCc
Q 002525 764 TVNNNNKNSSFNTRKAYFYWVTREQGSFEWFKGIMNEVAEMDEKRVIELHNYCTSVYEEGDARSALIAMLQSLHHAKNGV 843 (912)
Q Consensus 764 ~~~~~~~~~~~~~~rv~l~W~~R~~~~~~wf~~~L~el~~~~~~~~i~i~iy~T~~~~~~d~~s~l~~~~q~l~~~~~~~ 843 (912)
.++++|+|++|+.+++ +|.++|.++++. + .+++... .
T Consensus 123 ------------~~~v~l~~~~r~~~~~-~~~~el~~l~~~-----~---~~~~~~~---~------------------- 159 (248)
T cd06219 123 ------------GNRVITIIGARTKDLV-ILEDEFRAVSDE-----L---IITTDDG---S------------------- 159 (248)
T ss_pred ------------CCeEEEEEEcCCHHHh-hhHHHHHhhcCe-----E---EEEeCCC---C-------------------
Confidence 2579999999999987 678878777431 1 1222210 0
Q ss_pred ccccCCccccccCCCCHHHHHHHHHhhCCCCeEEEEEeCChHHHHHHHHHHHhh
Q 002525 844 DVVSGTRVKSHFAKPNWRQVYKRIALHHPDSRIGVFYCGAPALTKELRQLASDF 897 (912)
Q Consensus 844 d~~sg~~v~~~~gRPd~~~vl~~~~~~~~~~~v~V~~CGP~~m~~~vr~~~~~~ 897 (912)
.| ..|+ ..+.+.+....... ...||+|||++|++.+++.+.+.
T Consensus 160 ---~~-----~~g~--v~~~l~~~~~~~~~-~~~vyiCGP~~m~~~~~~~l~~~ 202 (248)
T cd06219 160 ---YG-----EKGF--VTDPLKELIESGEK-VDLVIAIGPPIMMKAVSELTRPY 202 (248)
T ss_pred ---CC-----cccc--chHHHHHHHhccCC-ccEEEEECCHHHHHHHHHHHHHc
Confidence 00 0011 12334433322222 23699999999999999988754
No 46
>cd06220 DHOD_e_trans_like2 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=99.90 E-value=1e-22 Score=216.89 Aligned_cols=200 Identities=21% Similarity=0.329 Sum_probs=149.2
Q ss_pred eEEEEEEEecCCEEEEEEecCCCccccCccEEEEEeCCCCCCcccceeeeecCCCCeEEEEEEecCcchHHHHHHHhhcc
Q 002525 606 VKILKVAVYPGNVLALHMSKPQGFKYKSGQYMFVNCAAVSPFEWHPFSITSSPGDDYLSVHIRTLGDWTRQLKTVFSEVC 685 (912)
Q Consensus 606 ~~i~~v~~~~~~v~~l~~~~p~~~~~~pGQyv~l~~p~~s~~e~HPFTIaS~p~~~~l~l~Ir~~G~~T~~L~~~~~~~~ 685 (912)
++|.++..+++++.+++++.| +.|+||||+.|++|.. ..|||||+|.| +.++|+||..|.+|+.|.+ .
T Consensus 1 ~~v~~~~~~t~~~~~~~l~~~--~~~~pGQ~v~l~~~~~---~~~~~Si~s~~--~~l~~~v~~~G~~s~~L~~-l---- 68 (233)
T cd06220 1 VTIKEVIDETPTVKTFVFDWD--FDFKPGQFVMVWVPGV---DEIPMSLSYID--GPNSITVKKVGEATSALHD-L---- 68 (233)
T ss_pred CEEEEEEEEcCCEEEEEEecC--CCCCCCceEEEEeCCC---CcceeEEecCC--CeEEEEEEecChHHHHHHh-c----
Confidence 467889999999999999875 5899999999999864 46999999998 7899999999999999976 3
Q ss_pred CCCCCCCCccchhhhccCCCCCCeEEEeCCCCCCCCCCCCCCEEEEEEcCcchhhHHHHHHHHHHhccccCccccccccc
Q 002525 686 QPAPAGKSGLLRAERENNSRGFPKILIDGPYGAPAQDYKKYDVVLLVGLGIGATPMISIVKDIINNMKSEDNNLESGLTV 765 (912)
Q Consensus 686 ~~~~~g~sg~~~~~~~~~~~~~~~v~IdGPYG~~~~~~~~y~~vllVagGiGITP~lsiL~~l~~~~~~~~~~~~~~~~~ 765 (912)
+.+..+.|.||||.+.. .. ++.+|+||||+||||++|+++++..+
T Consensus 69 -------------------~~Gd~v~i~gP~G~~f~-~~-~~~~vliAgGtGitP~~sil~~~~~~-------------- 113 (233)
T cd06220 69 -------------------KEGDKLGIRGPYGNGFE-LV-GGKVLLIGGGIGIAPLAPLAERLKKA-------------- 113 (233)
T ss_pred -------------------CCCCEEEEECcCCCCcc-CC-CCeEEEEecCcChHHHHHHHHHHHhc--------------
Confidence 14778999999998432 22 67999999999999999999998642
Q ss_pred cCCCCCCCCCcceEEEEEEeCCCCcHHHHHHHHHHHHhhcCCCcEEEEEeeccccCCCChhHHHHHHHhhhccccCCccc
Q 002525 766 NNNNKNSSFNTRKAYFYWVTREQGSFEWFKGIMNEVAEMDEKRVIELHNYCTSVYEEGDARSALIAMLQSLHHAKNGVDV 845 (912)
Q Consensus 766 ~~~~~~~~~~~~rv~l~W~~R~~~~~~wf~~~L~el~~~~~~~~i~i~iy~T~~~~~~d~~s~l~~~~q~l~~~~~~~d~ 845 (912)
++++|+|.+|+.+++ .+.++|++ . ..+ ++ ++.. +.
T Consensus 114 -----------~~i~l~~~~r~~~d~-~~~~eL~~---~---~~~--~~-~~~~---~~--------------------- 148 (233)
T cd06220 114 -----------ADVTVLLGARTKEEL-LFLDRLRK---S---DEL--IV-TTDD---GS--------------------- 148 (233)
T ss_pred -----------CCEEEEEecCChHHC-hhHHHHhh---C---CcE--EE-EEeC---CC---------------------
Confidence 469999999999987 56666654 1 112 11 2211 00
Q ss_pred ccCCccccccCCCCHHHHHHHHHhhCCCCeEEEEEeCChHHHHHHHHHHHhhccCCCceEEEEeecC
Q 002525 846 VSGTRVKSHFAKPNWRQVYKRIALHHPDSRIGVFYCGAPALTKELRQLASDFSHKTSTKFEFHKENF 912 (912)
Q Consensus 846 ~sg~~v~~~~gRPd~~~vl~~~~~~~~~~~v~V~~CGP~~m~~~vr~~~~~~~~~~~~~~~fh~E~F 912 (912)
.+ ..|+ +.+++.+... .....||+|||++|++.+++.+.+..- ...+|.|.|
T Consensus 149 -~~-----~~g~--~~~~l~~~~~---~~~~~vyicGp~~m~~~~~~~L~~~g~----~~~i~~e~f 200 (233)
T cd06220 149 -YG-----FKGF--VTDLLKELDL---EEYDAIYVCGPEIMMYKVLEILDERGV----RAQFSLERY 200 (233)
T ss_pred -Cc-----ccce--ehHHHhhhcc---cCCCEEEEECCHHHHHHHHHHHHhcCC----cEEEEeccc
Confidence 00 0122 2334444331 112369999999999999998876532 577888876
No 47
>cd06192 DHOD_e_trans_like FAD/NAD binding domain (electron transfer subunit) of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (formi
Probab=99.90 E-value=8.7e-23 Score=218.79 Aligned_cols=144 Identities=22% Similarity=0.303 Sum_probs=119.6
Q ss_pred EEEEEecCCEEEEEEecCC-CccccCccEEEEEeCCCCCCcccceeeeecCC-CCeEEEEEEecCcchHHHHHHHhhccC
Q 002525 609 LKVAVYPGNVLALHMSKPQ-GFKYKSGQYMFVNCAAVSPFEWHPFSITSSPG-DDYLSVHIRTLGDWTRQLKTVFSEVCQ 686 (912)
Q Consensus 609 ~~v~~~~~~v~~l~~~~p~-~~~~~pGQyv~l~~p~~s~~e~HPFTIaS~p~-~~~l~l~Ir~~G~~T~~L~~~~~~~~~ 686 (912)
++++.+++++.+|+++.|. .+.|+||||++|++|......+|||||+|.|. +++++|+||..|.+|+.|.++.
T Consensus 2 ~~~~~~t~~~~~l~l~~~~~~~~~~pGQ~v~l~~~~~~~~~~rpySi~s~~~~~~~l~l~i~~~G~~t~~l~~~~----- 76 (243)
T cd06192 2 VKKEQLEPNLVLLTIKAPLAARLFRPGQFVFLRNFESPGLERIPLSLAGVDPEEGTISLLVEIRGPKTKLIAELK----- 76 (243)
T ss_pred ceEEEecCCEEEEEEEccchhhcCCCCCeEEEecCCCCCceeeeeEeeecCCCCCEEEEEEEEcCchHHHHHhCC-----
Confidence 5677788999999999875 36899999999999764556899999999974 6799999999999998885422
Q ss_pred CCCCCCCccchhhhccCCCCCCeEEEeCCCCCCCCCCCCCCEEEEEEcCcchhhHHHHHHHHHHhccccCcccccccccc
Q 002525 687 PAPAGKSGLLRAERENNSRGFPKILIDGPYGAPAQDYKKYDVVLLVGLGIGATPMISIVKDIINNMKSEDNNLESGLTVN 766 (912)
Q Consensus 687 ~~~~g~sg~~~~~~~~~~~~~~~v~IdGPYG~~~~~~~~y~~vllVagGiGITP~lsiL~~l~~~~~~~~~~~~~~~~~~ 766 (912)
.+..+.|.||||.+.......+.+||||||+||||++++++++..+
T Consensus 77 -------------------~G~~l~i~gP~G~~~~~~~~~~~~lliagGtGiap~~~~l~~~~~~--------------- 122 (243)
T cd06192 77 -------------------PGEKLDVMGPLGNGFEGPKKGGTVLLVAGGIGLAPLLPIAKKLAAN--------------- 122 (243)
T ss_pred -------------------CCCEEEEEccCCCCCccCCCCCEEEEEeCcccHHHHHHHHHHHHHC---------------
Confidence 4678999999998754333467999999999999999999998743
Q ss_pred CCCCCCCCCcceEEEEEEeCCCCcHHHHHHHHHHH
Q 002525 767 NNNKNSSFNTRKAYFYWVTREQGSFEWFKGIMNEV 801 (912)
Q Consensus 767 ~~~~~~~~~~~rv~l~W~~R~~~~~~wf~~~L~el 801 (912)
.++++++|.+|+.+++ ++.++|.++
T Consensus 123 ---------~~~v~l~~~~r~~~d~-~~~~el~~~ 147 (243)
T cd06192 123 ---------GNKVTVLAGAKKAKEE-FLDEYFELP 147 (243)
T ss_pred ---------CCeEEEEEecCcHHHH-HHHHHHHhh
Confidence 2579999999999986 677777655
No 48
>PRK08221 anaerobic sulfite reductase subunit B; Provisional
Probab=99.90 E-value=1.3e-22 Score=219.66 Aligned_cols=207 Identities=18% Similarity=0.226 Sum_probs=151.6
Q ss_pred ceEEEEEEEecCCEEEEEEecCCCccccCccEEEEEeCCCCCCcccceeeeecCCCCeEEEEEEecCcchHHHHHHHhhc
Q 002525 605 PVKILKVAVYPGNVLALHMSKPQGFKYKSGQYMFVNCAAVSPFEWHPFSITSSPGDDYLSVHIRTLGDWTRQLKTVFSEV 684 (912)
Q Consensus 605 ~~~i~~v~~~~~~v~~l~~~~p~~~~~~pGQyv~l~~p~~s~~e~HPFTIaS~p~~~~l~l~Ir~~G~~T~~L~~~~~~~ 684 (912)
..+|++++.+++++.+++++.| +.|+||||+.|.+|..+ .|||||++.+ ++.++|+||..|..|..|.+ +
T Consensus 9 ~~~v~~i~~~t~~~~~~~l~~~--~~~~pGQfi~l~~~~~~---~~pySi~~~~-~~~~~~~Ik~~G~~S~~L~~-l--- 78 (263)
T PRK08221 9 AYKILDITKHTDIEYTFRVEVD--GPVKPGQFFEVSLPKVG---EAPISVSDYG-DGYIDLTIRRVGKVTDEIFN-L--- 78 (263)
T ss_pred cEEEEEEeccCCcEEEEEecCC--CCCCCCceEEEEeCCCC---cceeeccCCC-CCEEEEEEEeCCchhhHHHh-C---
Confidence 4788999999999999999876 57999999999998643 4999999876 67899999999999998864 2
Q ss_pred cCCCCCCCCccchhhhccCCCCCCeEEEeCCCCC-CCCCCCCCCEEEEEEcCcchhhHHHHHHHHHHhccccCccccccc
Q 002525 685 CQPAPAGKSGLLRAERENNSRGFPKILIDGPYGA-PAQDYKKYDVVLLVGLGIGATPMISIVKDIINNMKSEDNNLESGL 763 (912)
Q Consensus 685 ~~~~~~g~sg~~~~~~~~~~~~~~~v~IdGPYG~-~~~~~~~y~~vllVagGiGITP~lsiL~~l~~~~~~~~~~~~~~~ 763 (912)
..+..+.|.||||. +..+....+.+||||||+||||++|++++++++..
T Consensus 79 --------------------~~Gd~v~v~gP~G~~f~~~~~~~~~~llIAgGtGItP~~sil~~~~~~~~---------- 128 (263)
T PRK08221 79 --------------------KEGDKLFLRGPYGNGFPVDTYKGKELIVVAGGTGVAPVKGLMRYFYENPQ---------- 128 (263)
T ss_pred --------------------CCCCEEEEECCCCCCcccCccCCccEEEEcccccHHHHHHHHHHHHhCcc----------
Confidence 14778999999998 43333345689999999999999999999875321
Q ss_pred cccCCCCCCCCCcceEEEEEEeCCCCcHHHHHHHHHHHHhhcCCCcEEEEEeeccccCCCChhHHHHHHHhhhccccCCc
Q 002525 764 TVNNNNKNSSFNTRKAYFYWVTREQGSFEWFKGIMNEVAEMDEKRVIELHNYCTSVYEEGDARSALIAMLQSLHHAKNGV 843 (912)
Q Consensus 764 ~~~~~~~~~~~~~~rv~l~W~~R~~~~~~wf~~~L~el~~~~~~~~i~i~iy~T~~~~~~d~~s~l~~~~q~l~~~~~~~ 843 (912)
..++++|+|++|+.+++ .|.++|.++++.. .+++.+++..+ +
T Consensus 129 -----------~~~~v~L~~g~r~~~~l-~~~~el~~~~~~~-----~~~~~~~~~~~--~------------------- 170 (263)
T PRK08221 129 -----------EIKSLDLILGFKNPDDI-LFKEDLKRWREKI-----NLILTLDEGEE--G------------------- 170 (263)
T ss_pred -----------cCceEEEEEecCCHHHh-hHHHHHHHHhhcC-----cEEEEecCCCC--C-------------------
Confidence 13589999999999987 6888888876521 23322332110 0
Q ss_pred ccccCCccccccCCCCHHHHHHHHHhhCCCCeEEEEEeCChHHHHHHHHHHHhhcc
Q 002525 844 DVVSGTRVKSHFAKPNWRQVYKRIALHHPDSRIGVFYCGAPALTKELRQLASDFSH 899 (912)
Q Consensus 844 d~~sg~~v~~~~gRPd~~~vl~~~~~~~~~~~v~V~~CGP~~m~~~vr~~~~~~~~ 899 (912)
..-+.||.+ +.+.+..... .....||+||||+|++++++...+..-
T Consensus 171 -------~~~~~G~v~--~~l~~~~~~~-~~~~~vylCGp~~mv~~~~~~L~~~Gv 216 (263)
T PRK08221 171 -------YRGNVGLVT--KYIPELTLKD-IDNMQVIVVGPPIMMKFTVLEFLKRGI 216 (263)
T ss_pred -------CccCccccC--hhhHhccCCC-cCCeEEEEECCHHHHHHHHHHHHHcCC
Confidence 001235544 2232221111 134679999999999999998877643
No 49
>PRK05464 Na(+)-translocating NADH-quinone reductase subunit F; Provisional
Probab=99.90 E-value=1.1e-22 Score=233.98 Aligned_cols=230 Identities=16% Similarity=0.305 Sum_probs=165.3
Q ss_pred cceEEEEEEEecCCEEEEEEecC--CCccccCccEEEEEeCCC-----------------------------CCCcccce
Q 002525 604 EPVKILKVAVYPGNVLALHMSKP--QGFKYKSGQYMFVNCAAV-----------------------------SPFEWHPF 652 (912)
Q Consensus 604 ~~~~i~~v~~~~~~v~~l~~~~p--~~~~~~pGQyv~l~~p~~-----------------------------s~~e~HPF 652 (912)
...+|++++.+++++.+++++.| .++.|+||||+.|++|.. ....++||
T Consensus 134 ~~~~V~~~~~ls~~i~~l~l~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~y 213 (409)
T PRK05464 134 WECTVISNDNVATFIKELVLKIPEGEEVPFRAGGYIQIEAPPHKVKYKDFDIPEEYRGDWDKFNLFRLVSKVDEPVIRAY 213 (409)
T ss_pred EEEEEEEcccCCchhheEEEecCCCCcccccCCceEEEEcccccccccccccchhhhhhhhhccccceeccCCCceeeee
Confidence 35788888999999999999887 357899999999999842 12457999
Q ss_pred eeeecCCC-CeEEEEEEe-----------cCcchHHHHHHHhhccCCCCCCCCccchhhhccCCCCCCeEEEeCCCCCCC
Q 002525 653 SITSSPGD-DYLSVHIRT-----------LGDWTRQLKTVFSEVCQPAPAGKSGLLRAERENNSRGFPKILIDGPYGAPA 720 (912)
Q Consensus 653 TIaS~p~~-~~l~l~Ir~-----------~G~~T~~L~~~~~~~~~~~~~g~sg~~~~~~~~~~~~~~~v~IdGPYG~~~ 720 (912)
||+|+|.+ +.++|+||. .|..|..|.+ + ..+..+.|.||+|.+.
T Consensus 214 Sias~p~~~~~l~~~vr~~~~~~~~~~~~~G~~S~~L~~-l-----------------------~~Gd~v~v~gP~G~f~ 269 (409)
T PRK05464 214 SMANYPEEKGIIMLNVRIATPPPGNPDVPPGIMSSYIFS-L-----------------------KPGDKVTISGPFGEFF 269 (409)
T ss_pred ccCCCCCCCCeEEEEEEEeecCCCcCCCCCCchhhHHHh-C-----------------------CCCCEEEEEccccCcE
Confidence 99999965 589999996 3778888874 2 1578899999999986
Q ss_pred CCCCCCCEEEEEEcCcchhhHHHHHHHHHHhccccCccccccccccCCCCCCCCCcceEEEEEEeCCCCcHHHHHHHHHH
Q 002525 721 QDYKKYDVVLLVGLGIGATPMISIVKDIINNMKSEDNNLESGLTVNNNNKNSSFNTRKAYFYWVTREQGSFEWFKGIMNE 800 (912)
Q Consensus 721 ~~~~~y~~vllVagGiGITP~lsiL~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~l~W~~R~~~~~~wf~~~L~e 800 (912)
.. ...+.+|||||||||||++|++++++.... ..++++|+|++|+.+++ .|.+++++
T Consensus 270 ~~-~~~~~ivlIAgGtGIaP~~sml~~~l~~~~---------------------~~~~v~L~~g~r~~~d~-~~~~el~~ 326 (409)
T PRK05464 270 AK-DTDAEMVFIGGGAGMAPMRSHIFDQLKRLK---------------------SKRKISFWYGARSLREM-FYVEDFDQ 326 (409)
T ss_pred ec-CCCceEEEEEeccChhHHHHHHHHHHhCCC---------------------CCceEEEEEecCCHHHh-hHHHHHHH
Confidence 43 356789999999999999999998875421 13689999999999987 67888888
Q ss_pred HHhhcCCCcEEEEEeeccccCCCChhHHHHHHHhhhccccCCcccccCCccccccCCCCHHHHHHHHHhhC-CCCeEEEE
Q 002525 801 VAEMDEKRVIELHNYCTSVYEEGDARSALIAMLQSLHHAKNGVDVVSGTRVKSHFAKPNWRQVYKRIALHH-PDSRIGVF 879 (912)
Q Consensus 801 l~~~~~~~~i~i~iy~T~~~~~~d~~s~l~~~~q~l~~~~~~~d~~sg~~v~~~~gRPd~~~vl~~~~~~~-~~~~v~V~ 879 (912)
+++..+ ++++++.+++..+ .+. ..| +.|+.+ +.+.+.....+ ......||
T Consensus 327 l~~~~~--~~~~~~~~s~~~~-~~~--------------------~~g-----~~G~v~-~~l~~~~l~~~~~~~~~~vy 377 (409)
T PRK05464 327 LAAENP--NFKWHVALSDPLP-EDN--------------------WTG-----YTGFIH-NVLYENYLKDHEAPEDCEYY 377 (409)
T ss_pred HHHhCC--CeEEEEEEcCCCC-CCC--------------------CCC-----ccceeC-HHHHHhhhhhcCCCCCeEEE
Confidence 876443 4777765554211 110 001 112222 12222222211 12346799
Q ss_pred EeCChHHHHHHHHHHHhhccCCCceEEEEeecC
Q 002525 880 YCGAPALTKELRQLASDFSHKTSTKFEFHKENF 912 (912)
Q Consensus 880 ~CGP~~m~~~vr~~~~~~~~~~~~~~~fh~E~F 912 (912)
+|||++|++.+++.+.+..- ..-.+|.|.|
T Consensus 378 iCGP~~m~~av~~~L~~~Gv---~~~~I~~E~F 407 (409)
T PRK05464 378 MCGPPMMNAAVIKMLKDLGV---EDENILLDDF 407 (409)
T ss_pred EECCHHHHHHHHHHHHHcCC---CHHHEEEccc
Confidence 99999999999999877543 3456788877
No 50
>PTZ00274 cytochrome b5 reductase; Provisional
Probab=99.90 E-value=1.6e-22 Score=223.93 Aligned_cols=224 Identities=13% Similarity=0.163 Sum_probs=161.3
Q ss_pred HhcccceEEEEEEEecCCEEEEEEecCC--CccccCccEEEEEeCCC---CCCcccceeeeecCC-CCeEEEEEEec--C
Q 002525 600 RSSIEPVKILKVAVYPGNVLALHMSKPQ--GFKYKSGQYMFVNCAAV---SPFEWHPFSITSSPG-DDYLSVHIRTL--G 671 (912)
Q Consensus 600 r~~~~~~~i~~v~~~~~~v~~l~~~~p~--~~~~~pGQyv~l~~p~~---s~~e~HPFTIaS~p~-~~~l~l~Ir~~--G 671 (912)
...|+.++|.+++.+++++.+++|+.|. .+.++||||+.+.++.. ....++||||+|.|+ +++++|+||.. |
T Consensus 49 ~~~~~~~~V~~i~~~t~dv~~f~f~lp~~~~~~f~pGQ~l~l~~~~~~~~~~~~~R~YSiaS~p~~~~~le~~IK~~~~G 128 (325)
T PTZ00274 49 SQRYEPYQLGEVIPITHDTALFRFLLHSEEEFNLKPCSTLQACYKYGVQPMDQCQRFYTPVTANHTKGYFDIIVKRKKDG 128 (325)
T ss_pred CCceEEEEEEEEEEeCCCeEEEEEeCCcccccCCCCccEEEEEEecCCCCCCEEEEeeecCCCCCCCCeEEEEEEEcCCC
Confidence 4567889999999999999999998764 68999999999877632 123589999999996 57899999996 6
Q ss_pred cchHHHHHHHhhccCCCCCCCCccchhhhccCCCCCCeEEEeCCCCCCCCCCCCCCEEEEEEcCcchhhHHHHHHHHHHh
Q 002525 672 DWTRQLKTVFSEVCQPAPAGKSGLLRAERENNSRGFPKILIDGPYGAPAQDYKKYDVVLLVGLGIGATPMISIVKDIINN 751 (912)
Q Consensus 672 ~~T~~L~~~~~~~~~~~~~g~sg~~~~~~~~~~~~~~~v~IdGPYG~~~~~~~~y~~vllVagGiGITP~lsiL~~l~~~ 751 (912)
.+|..|.+ + ..+..+.|.||+|....+....+.+|+|||||||||++||+++++.+
T Consensus 129 ~~S~~L~~-l-----------------------k~Gd~v~v~GP~f~~~~~~~~~~~lvlIAGGsGITP~lsmlr~~l~~ 184 (325)
T PTZ00274 129 LMTNHLFG-M-----------------------HVGDKLLFRSVTFKIQYRPNRWKHVGMIAGGTGFTPMLQIIRHSLTE 184 (325)
T ss_pred cccHHHhc-C-----------------------CCCCEEEEeCCeeecccCCCCCceEEEEeCCcchhHHHHHHHHHHhc
Confidence 67988875 3 25789999999887543333457899999999999999999998765
Q ss_pred ccccCccccccccccCCCCCCCCCcceEEEEEEeCCCCcHHHHHHHHHHHHhhcCCCcEEEEEeeccccCCCChhHHHHH
Q 002525 752 MKSEDNNLESGLTVNNNNKNSSFNTRKAYFYWVTREQGSFEWFKGIMNEVAEMDEKRVIELHNYCTSVYEEGDARSALIA 831 (912)
Q Consensus 752 ~~~~~~~~~~~~~~~~~~~~~~~~~~rv~l~W~~R~~~~~~wf~~~L~el~~~~~~~~i~i~iy~T~~~~~~d~~s~l~~ 831 (912)
..... .....+|+|+|++|+.+++ +|+++|+++++..++ +++++..+++..++.+.
T Consensus 185 ~~~~~----------------~~~~~~v~Llyg~R~~~di-~~~~eL~~La~~~~~-~f~v~~~ls~~~~~~~w------ 240 (325)
T PTZ00274 185 PWDSG----------------EVDRTKLSFLFCNRTERHI-LLKGLFDDLARRYSN-RFKVYYTIDQAVEPDKW------ 240 (325)
T ss_pred ccccc----------------cCCCCeEEEEEEcCCHHHh-hHHHHHHHHHHhCCC-cEEEEEEeCCCCcccCC------
Confidence 32110 0013589999999999997 789999999876543 57777666543211000
Q ss_pred HHhhhccccCCcccccCCccccccCCCCHHHHHHHHHhhCCCCeEEEEEeCChHHHHHHHH
Q 002525 832 MLQSLHHAKNGVDVVSGTRVKSHFAKPNWRQVYKRIALHHPDSRIGVFYCGAPALTKELRQ 892 (912)
Q Consensus 832 ~~q~l~~~~~~~d~~sg~~v~~~~gRPd~~~vl~~~~~~~~~~~v~V~~CGP~~m~~~vr~ 892 (912)
..+.||.+- .++.+...........||+|||++|++.+..
T Consensus 241 --------------------~g~~G~V~~-~ll~~~~~~~~~~~~~vylCGPp~Mm~av~~ 280 (325)
T PTZ00274 241 --------------------NHFLGYVTK-EMVRRTMPAPEEKKKIIMLCGPDQLLNHVAG 280 (325)
T ss_pred --------------------CCCCCccCH-HHHHHhcCCCccCCcEEEEeCCHHHHHHhcC
Confidence 012355552 2333332211112346999999999999965
No 51
>cd06208 CYPOR_like_FNR These ferredoxin reductases are related to the NADPH cytochrome p450 reductases (CYPOR), but lack the FAD-binding region connecting sub-domain. Ferredoxin-NADP+ reductase (FNR) is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins, such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2, which then
Probab=99.90 E-value=3.5e-22 Score=219.12 Aligned_cols=221 Identities=14% Similarity=0.211 Sum_probs=156.5
Q ss_pred ceEEEEEEEec-----CCEEEEEEecCCCccccCccEEEEEeCCCC-----CCcccceeeeecCCC-----CeEEEEEEe
Q 002525 605 PVKILKVAVYP-----GNVLALHMSKPQGFKYKSGQYMFVNCAAVS-----PFEWHPFSITSSPGD-----DYLSVHIRT 669 (912)
Q Consensus 605 ~~~i~~v~~~~-----~~v~~l~~~~p~~~~~~pGQyv~l~~p~~s-----~~e~HPFTIaS~p~~-----~~l~l~Ir~ 669 (912)
.++|++++.++ +++.++++..+..+.|+|||||.|.+|... +...|||||+|.|.+ +.++|+||.
T Consensus 10 ~~~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~pGQ~v~l~~~~~~~~~g~~~~~R~YSIas~p~~~~~~~~~l~l~Vk~ 89 (286)
T cd06208 10 IGKVVSNTRLTGPDAPGEVCHIVIDHGGKLPYLEGQSIGIIPPGTDAKNGKPHKLRLYSIASSRYGDDGDGKTLSLCVKR 89 (286)
T ss_pred EEEEEeceeccCCCCCcceEEEEEeCCCcccccCCceEEEECCCcchhcCCCCCceeeEecCCccccCCCCCEEEEEEEE
Confidence 46788888887 699999999877889999999999877432 234799999998853 589999998
Q ss_pred c------------CcchHHHHHHHhhccCCCCCCCCccchhhhccCCCCCCeEEEeCCCCCCCCCC-CCCCEEEEEEcCc
Q 002525 670 L------------GDWTRQLKTVFSEVCQPAPAGKSGLLRAERENNSRGFPKILIDGPYGAPAQDY-KKYDVVLLVGLGI 736 (912)
Q Consensus 670 ~------------G~~T~~L~~~~~~~~~~~~~g~sg~~~~~~~~~~~~~~~v~IdGPYG~~~~~~-~~y~~vllVagGi 736 (912)
. |..|..|.++ ..+..|.|.||+|.+.... ...+.+||||||+
T Consensus 90 ~~~~~~~~~~~~~G~~S~~L~~l------------------------~~Gd~v~v~gP~G~~~~~~~~~~~~~vlIagGt 145 (286)
T cd06208 90 LVYTDPETDETKKGVCSNYLCDL------------------------KPGDDVQITGPVGKTMLLPEDPNATLIMIATGT 145 (286)
T ss_pred EEEecCCCCceeccchHHHHhhC------------------------CCCCEEEEEeecCCcccCCCCCCCCEEEEecCc
Confidence 7 6677777652 2578999999999875322 2345799999999
Q ss_pred chhhHHHHHHHHHHhccccCccccccccccCCCCCCCCCcceEEEEEEeCCCCcHHHHHHHHHHHHhhcCCCcEEEEEee
Q 002525 737 GATPMISIVKDIINNMKSEDNNLESGLTVNNNNKNSSFNTRKAYFYWVTREQGSFEWFKGIMNEVAEMDEKRVIELHNYC 816 (912)
Q Consensus 737 GITP~lsiL~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~l~W~~R~~~~~~wf~~~L~el~~~~~~~~i~i~iy~ 816 (912)
||||++|++++++....... ...++++|+|++|+.+++ .|.+.|+++++..+ ..++++..+
T Consensus 146 GIaP~~s~l~~~~~~~~~~~-----------------~~~~~v~L~~g~r~~~d~-~~~~el~~l~~~~~-~~~~~~~~~ 206 (286)
T cd06208 146 GIAPFRSFLRRLFREKHADY-----------------KFTGLAWLFFGVPNSDSL-LYDDELEKYPKQYP-DNFRIDYAF 206 (286)
T ss_pred cHHHHHHHHHHHHHhhhccc-----------------CCCCCEEEEEEecCccch-hHHHHHHHHHHhCC-CcEEEEEEE
Confidence 99999999999876521110 014679999999999987 68888888877533 257777766
Q ss_pred ccccCCCChhHHHHHHHhhhccccCCcccccCCccccccCCCCHHHHHHH----HHhhCCCCeEEEEEeCChHHHHHHHH
Q 002525 817 TSVYEEGDARSALIAMLQSLHHAKNGVDVVSGTRVKSHFAKPNWRQVYKR----IALHHPDSRIGVFYCGAPALTKELRQ 892 (912)
Q Consensus 817 T~~~~~~d~~s~l~~~~q~l~~~~~~~d~~sg~~v~~~~gRPd~~~vl~~----~~~~~~~~~v~V~~CGP~~m~~~vr~ 892 (912)
|+..... .|. .|+ +.+.+.+ +..........||+|||++|++.+++
T Consensus 207 sr~~~~~-----------------------~g~-----~g~--v~~~i~~~~~~l~~~l~~~~~~vYiCGp~~m~~~v~~ 256 (286)
T cd06208 207 SREQKNA-----------------------DGG-----KMY--VQDRIAEYAEEIWNLLDKDNTHVYICGLKGMEPGVDD 256 (286)
T ss_pred cCCCCCC-----------------------CCC-----cee--hhhHHHHhHHHHHHHHhcCCcEEEEeCCchHHHHHHH
Confidence 6531100 000 011 1222221 11111122357999999999999999
Q ss_pred HHHhhc
Q 002525 893 LASDFS 898 (912)
Q Consensus 893 ~~~~~~ 898 (912)
++.+..
T Consensus 257 ~L~~~~ 262 (286)
T cd06208 257 ALTSVA 262 (286)
T ss_pred HHHHHH
Confidence 888754
No 52
>TIGR01941 nqrF NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit. This model represents the NqrF subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=99.89 E-value=3.2e-22 Score=229.75 Aligned_cols=230 Identities=16% Similarity=0.316 Sum_probs=163.8
Q ss_pred cceEEEEEEEecCCEEEEEEecCC--CccccCccEEEEEeCCC-----------------------------CCCcccce
Q 002525 604 EPVKILKVAVYPGNVLALHMSKPQ--GFKYKSGQYMFVNCAAV-----------------------------SPFEWHPF 652 (912)
Q Consensus 604 ~~~~i~~v~~~~~~v~~l~~~~p~--~~~~~pGQyv~l~~p~~-----------------------------s~~e~HPF 652 (912)
...+|++++.+++++.+++++.+. ++.|+||||+.|.+|.. ....+|||
T Consensus 130 ~~~~v~~~~~~s~~i~~l~l~~~~~~~~~~~pGQfv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~y 209 (405)
T TIGR01941 130 WECEVISNDNVATFIKELVLKLPDGESVPFKAGGYIQIEAPPHVVKYADFDIPPEYRGDWEKFNLFDLVSKVDEETVRAY 209 (405)
T ss_pred eeeEEEEcccccchhheEEEecCCCceeeecCCceEEEEcccccccccccccchhhhhhHhhhcchheeccCCCccceee
Confidence 346788888899999999998763 47899999999999743 12357999
Q ss_pred eeeecCCC-CeEEEEEEec-----------CcchHHHHHHHhhccCCCCCCCCccchhhhccCCCCCCeEEEeCCCCCCC
Q 002525 653 SITSSPGD-DYLSVHIRTL-----------GDWTRQLKTVFSEVCQPAPAGKSGLLRAERENNSRGFPKILIDGPYGAPA 720 (912)
Q Consensus 653 TIaS~p~~-~~l~l~Ir~~-----------G~~T~~L~~~~~~~~~~~~~g~sg~~~~~~~~~~~~~~~v~IdGPYG~~~ 720 (912)
||+|.|.+ +.++|+||.. |..|..|.+ + ..+..+.|.||||.+.
T Consensus 210 Sias~p~~~~~l~~~vr~~~~~~~~~~~~~G~~S~~L~~-l-----------------------~~Gd~v~i~gP~G~f~ 265 (405)
T TIGR01941 210 SMANYPAEKGIIKLNVRIATPPFINSDIPPGIMSSYIFS-L-----------------------KPGDKVTISGPFGEFF 265 (405)
T ss_pred cCCCCCCCCCeEEEEEEEeccCcccCCCCCCcHHHHHhc-C-----------------------CCcCEEEEEeccCCCe
Confidence 99999974 6899999973 778888864 2 2578999999999986
Q ss_pred CCCCCCCEEEEEEcCcchhhHHHHHHHHHHhccccCccccccccccCCCCCCCCCcceEEEEEEeCCCCcHHHHHHHHHH
Q 002525 721 QDYKKYDVVLLVGLGIGATPMISIVKDIINNMKSEDNNLESGLTVNNNNKNSSFNTRKAYFYWVTREQGSFEWFKGIMNE 800 (912)
Q Consensus 721 ~~~~~y~~vllVagGiGITP~lsiL~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~l~W~~R~~~~~~wf~~~L~e 800 (912)
.. ...+.+||||||+||||++|++++++.... ..++++|+|++|+.+++ +|.+++++
T Consensus 266 l~-~~~~~lvlIAgGtGIaP~lsmi~~~l~~~~---------------------~~~~v~l~~g~R~~~dl-~~~~el~~ 322 (405)
T TIGR01941 266 AK-DTDAEMVFIGGGAGMAPMRSHIFDQLKRLK---------------------SKRKISFWYGARSLREM-FYQEDFDQ 322 (405)
T ss_pred ec-CCCCCEEEEecCcCcchHHHHHHHHHhcCC---------------------CCCeEEEEEecCCHHHH-hHHHHHHH
Confidence 43 345689999999999999999998765321 14679999999999987 68888888
Q ss_pred HHhhcCCCcEEEEEeeccccCCCChhHHHHHHHhhhccccCCcccccCCccccccCCCCHHHHHHHHHhhC-CCCeEEEE
Q 002525 801 VAEMDEKRVIELHNYCTSVYEEGDARSALIAMLQSLHHAKNGVDVVSGTRVKSHFAKPNWRQVYKRIALHH-PDSRIGVF 879 (912)
Q Consensus 801 l~~~~~~~~i~i~iy~T~~~~~~d~~s~l~~~~q~l~~~~~~~d~~sg~~v~~~~gRPd~~~vl~~~~~~~-~~~~v~V~ 879 (912)
+++..+ ++++++.+++..++... .| +.|+.. +.+........ ......||
T Consensus 323 l~~~~~--~~~~~~~~s~~~~~~~~---------------------~g-----~~G~v~-~~l~~~~l~~~~~~~~~~vy 373 (405)
T TIGR01941 323 LEAENP--NFVWHVALSDPQPEDNW---------------------TG-----YTGFIH-NVLYENYLKDHDAPEDCEFY 373 (405)
T ss_pred HHHhCC--CeEEEEEeCCCCccCCC---------------------CC-----ccceeC-HHHHHhhhcccCCCCCeEEE
Confidence 876443 57777666543211100 01 112221 11112222111 11246799
Q ss_pred EeCChHHHHHHHHHHHhhccCCCceEEEEeecC
Q 002525 880 YCGAPALTKELRQLASDFSHKTSTKFEFHKENF 912 (912)
Q Consensus 880 ~CGP~~m~~~vr~~~~~~~~~~~~~~~fh~E~F 912 (912)
+|||++|++.+++++.+..- ..-.+|.|.|
T Consensus 374 lCGP~~m~~av~~~L~~~Gv---~~~~I~~E~F 403 (405)
T TIGR01941 374 MCGPPMMNAAVIKMLEDLGV---ERENILLDDF 403 (405)
T ss_pred EeCCHHHHHHHHHHHHHcCC---CHHHEEEecc
Confidence 99999999999999887643 2345788877
No 53
>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed
Probab=99.89 E-value=9.6e-22 Score=215.02 Aligned_cols=200 Identities=24% Similarity=0.331 Sum_probs=146.0
Q ss_pred eEEEEEEEecCCEEEEEEecCCC-ccccCccEEEEEeCCCCCCcccceeeeecCC-CCeEEEEEEecCcchHHHHHHHhh
Q 002525 606 VKILKVAVYPGNVLALHMSKPQG-FKYKSGQYMFVNCAAVSPFEWHPFSITSSPG-DDYLSVHIRTLGDWTRQLKTVFSE 683 (912)
Q Consensus 606 ~~i~~v~~~~~~v~~l~~~~p~~-~~~~pGQyv~l~~p~~s~~e~HPFTIaS~p~-~~~l~l~Ir~~G~~T~~L~~~~~~ 683 (912)
++|++++.+++++..+++..|.. ..++||||+.|+++.. .++|||||+|+|. ++.++|+||..|..|+.|.++.
T Consensus 2 ~~I~~~~~~t~~~~~l~l~~~~~~~~~~pGQfv~l~~~~~--~~~rpySias~~~~~~~i~l~vk~~G~~T~~L~~l~-- 77 (281)
T PRK06222 2 YKILEKEELAPNVFLMEIEAPRVAKKAKPGQFVIVRIDEK--GERIPLTIADYDREKGTITIVFQAVGKSTRKLAELK-- 77 (281)
T ss_pred cEEEEEEEecCCEEEEEEeCchhhccCCCCeEEEEEeCCC--CCceeeEeeEEcCCCCEEEEEEEeCCcHHHHHhcCC--
Confidence 36788899999999999987753 5799999999999754 3579999999764 5789999999999999886321
Q ss_pred ccCCCCCCCCccchhhhccCCCCCCeE-EEeCCCCCCCCCCCCCCEEEEEEcCcchhhHHHHHHHHHHhccccCcccccc
Q 002525 684 VCQPAPAGKSGLLRAERENNSRGFPKI-LIDGPYGAPAQDYKKYDVVLLVGLGIGATPMISIVKDIINNMKSEDNNLESG 762 (912)
Q Consensus 684 ~~~~~~~g~sg~~~~~~~~~~~~~~~v-~IdGPYG~~~~~~~~y~~vllVagGiGITP~lsiL~~l~~~~~~~~~~~~~~ 762 (912)
.+..+ .|.||||.+.. ...++.+|||||||||||++++++++.++
T Consensus 78 ----------------------~Gd~v~~i~GP~G~~~~-~~~~~~~llIaGGiGiaPl~~l~~~l~~~----------- 123 (281)
T PRK06222 78 ----------------------EGDSILDVVGPLGKPSE-IEKFGTVVCVGGGVGIAPVYPIAKALKEA----------- 123 (281)
T ss_pred ----------------------CCCEEeeEEcCCCCCcc-cCCCCeEEEEeCcCcHHHHHHHHHHHHHC-----------
Confidence 46788 69999999753 33467899999999999999999988642
Q ss_pred ccccCCCCCCCCCcceEEEEEEeCCCCcHHHHHHHHHHHHhhcCCCcEEEEEeeccccCCCChhHHHHHHHhhhccccCC
Q 002525 763 LTVNNNNKNSSFNTRKAYFYWVTREQGSFEWFKGIMNEVAEMDEKRVIELHNYCTSVYEEGDARSALIAMLQSLHHAKNG 842 (912)
Q Consensus 763 ~~~~~~~~~~~~~~~rv~l~W~~R~~~~~~wf~~~L~el~~~~~~~~i~i~iy~T~~~~~~d~~s~l~~~~q~l~~~~~~ 842 (912)
..+++++|..|+.+++ .|.+++.++++. + +++.. ++.
T Consensus 124 -------------~~~v~l~~g~r~~~d~-~~~~el~~~~~~-------~--~v~~~--d~~------------------ 160 (281)
T PRK06222 124 -------------GNKVITIIGARNKDLL-ILEDEMKAVSDE-------L--YVTTD--DGS------------------ 160 (281)
T ss_pred -------------CCeEEEEEecCCHHHh-hcHHHHHhhCCe-------E--EEEcC--CCC------------------
Confidence 2479999999999987 567766655421 1 12211 000
Q ss_pred cccccCCccccccCCCCHHHHHHHHHhhCCCCeEEEEEeCChHHHHHHHHHHHhhc
Q 002525 843 VDVVSGTRVKSHFAKPNWRQVYKRIALHHPDSRIGVFYCGAPALTKELRQLASDFS 898 (912)
Q Consensus 843 ~d~~sg~~v~~~~gRPd~~~vl~~~~~~~~~~~v~V~~CGP~~m~~~vr~~~~~~~ 898 (912)
.| +.| .+.+++.+....... ...||+|||++|++.+.+.+.+..
T Consensus 161 ----~g-----~~G--~v~~~l~~~~~~~~~-~~~vy~CGP~~M~~~v~~~l~~~g 204 (281)
T PRK06222 161 ----YG-----RKG--FVTDVLKELLESGKK-VDRVVAIGPVIMMKFVAELTKPYG 204 (281)
T ss_pred ----cC-----ccc--chHHHHHHHhhcCCC-CcEEEEECCHHHHHHHHHHHHhcC
Confidence 00 011 223444444322211 236999999999999999887653
No 54
>TIGR02911 sulfite_red_B sulfite reductase, subunit B. Members of this protein family include the B subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum.
Probab=99.89 E-value=9.9e-22 Score=212.60 Aligned_cols=207 Identities=20% Similarity=0.255 Sum_probs=149.3
Q ss_pred ceEEEEEEEecCCEEEEEEecCCCccccCccEEEEEeCCCCCCcccceeeeecCCCCeEEEEEEecCcchHHHHHHHhhc
Q 002525 605 PVKILKVAVYPGNVLALHMSKPQGFKYKSGQYMFVNCAAVSPFEWHPFSITSSPGDDYLSVHIRTLGDWTRQLKTVFSEV 684 (912)
Q Consensus 605 ~~~i~~v~~~~~~v~~l~~~~p~~~~~~pGQyv~l~~p~~s~~e~HPFTIaS~p~~~~l~l~Ir~~G~~T~~L~~~~~~~ 684 (912)
.++|+++...++++..++++.| +.|+||||+.|.+|.. ..|||||++. +++.++|+||..|+.|..|.+ +
T Consensus 7 ~~~v~~~~~~t~~~~~~~~~~~--~~~~pGQ~v~l~~~~~---~~~pySi~~~-~~~~l~~~Vk~~G~~S~~L~~-l--- 76 (261)
T TIGR02911 7 KSEILEIIKHTDIEYTFRMSYD--GPVKPGQFFEVSLPKY---GEAPISVSGI-GEGYIDLTIRRVGKVTDEVFT-L--- 76 (261)
T ss_pred eEEEEEEeeccCCEEEEEcCCC--CCCCCCcEEEEEecCC---CccceecCCC-CCCeEEEEEEeCchhhHHHHc-C---
Confidence 5788888888999999999875 6799999999999864 3589999984 567899999999999988864 2
Q ss_pred cCCCCCCCCccchhhhccCCCCCCeEEEeCCCCC-CCCCCCCCCEEEEEEcCcchhhHHHHHHHHHHhccccCccccccc
Q 002525 685 CQPAPAGKSGLLRAERENNSRGFPKILIDGPYGA-PAQDYKKYDVVLLVGLGIGATPMISIVKDIINNMKSEDNNLESGL 763 (912)
Q Consensus 685 ~~~~~~g~sg~~~~~~~~~~~~~~~v~IdGPYG~-~~~~~~~y~~vllVagGiGITP~lsiL~~l~~~~~~~~~~~~~~~ 763 (912)
..+..+.|.||||. +..+....+.+||||||+||||++|++++++++..
T Consensus 77 --------------------~~Gd~v~i~gP~G~~f~~~~~~~~~~llIAgGtGIaP~~sil~~l~~~~~---------- 126 (261)
T TIGR02911 77 --------------------KEGDNLFLRGPYGNGFDVDNYKHKELVVVAGGTGVAPVKGVVEYFVKNPK---------- 126 (261)
T ss_pred --------------------CCCCEEEEecCCCCCcccCccCCceEEEEecccCcHHHHHHHHHHHhCcc----------
Confidence 14788999999998 43232345789999999999999999999875421
Q ss_pred cccCCCCCCCCCcceEEEEEEeCCCCcHHHHHHHHHHHHhhcCCCcEEEEEeeccccCCCChhHHHHHHHhhhccccCCc
Q 002525 764 TVNNNNKNSSFNTRKAYFYWVTREQGSFEWFKGIMNEVAEMDEKRVIELHNYCTSVYEEGDARSALIAMLQSLHHAKNGV 843 (912)
Q Consensus 764 ~~~~~~~~~~~~~~rv~l~W~~R~~~~~~wf~~~L~el~~~~~~~~i~i~iy~T~~~~~~d~~s~l~~~~q~l~~~~~~~ 843 (912)
..++++|+|++|+.+++ +|.++|.++++. ..+ +..+.+. +.+.
T Consensus 127 -----------~~~~v~L~~~~r~~~~~-~~~~eL~~l~~~---~~~--~~~~~~~--~~~~------------------ 169 (261)
T TIGR02911 127 -----------EIKSLNLILGFKTPDDI-LFKEDIAEWKGN---INL--TLTLDEA--EEDY------------------ 169 (261)
T ss_pred -----------cCceEEEEEecCCHHHh-hHHHHHHHHHhc---CcE--EEEEcCC--CCCC------------------
Confidence 13689999999999987 688888888753 123 2222221 1110
Q ss_pred ccccCCccccccCCCCHHHHHHHHHhhCCCCeEEEEEeCChHHHHHHHHHHHhhcc
Q 002525 844 DVVSGTRVKSHFAKPNWRQVYKRIALHHPDSRIGVFYCGAPALTKELRQLASDFSH 899 (912)
Q Consensus 844 d~~sg~~v~~~~gRPd~~~vl~~~~~~~~~~~v~V~~CGP~~m~~~vr~~~~~~~~ 899 (912)
.+ ..|+-+ +.+.+..... .....||+|||++|++++++...+...
T Consensus 170 ---~~-----~~g~v~--~~l~~~~~~~-~~~~~v~lCGp~~mv~~~~~~L~~~Gv 214 (261)
T TIGR02911 170 ---KG-----NIGLVT--KYIPELTLKD-IEEVQAIVVGPPIMMKFTVQELLKKGI 214 (261)
T ss_pred ---cC-----CeeccC--HhHHhccCCC-ccceEEEEECCHHHHHHHHHHHHHcCC
Confidence 00 112322 2222211111 224579999999999999998887643
No 55
>PRK05802 hypothetical protein; Provisional
Probab=99.88 E-value=2.4e-21 Score=214.82 Aligned_cols=150 Identities=21% Similarity=0.284 Sum_probs=122.5
Q ss_pred cceEEEEEEEecCCEEEEEEecCCC---ccccCccEEEEEeCCCCCCcccceeeeecCC-CCeEEEEEEecCcchHHHHH
Q 002525 604 EPVKILKVAVYPGNVLALHMSKPQG---FKYKSGQYMFVNCAAVSPFEWHPFSITSSPG-DDYLSVHIRTLGDWTRQLKT 679 (912)
Q Consensus 604 ~~~~i~~v~~~~~~v~~l~~~~p~~---~~~~pGQyv~l~~p~~s~~e~HPFTIaS~p~-~~~l~l~Ir~~G~~T~~L~~ 679 (912)
..++|++++.+++++..+++..|.. ..++|||||+|++|..+.+..|||||+++|. ++.++|+||..|..|+.|.+
T Consensus 65 ~~~~I~~~~~~t~dv~~l~l~~p~~~~~~~~~PGQFv~l~~~~~~~~~~rP~SI~~~~~~~g~l~l~ik~~G~~T~~L~~ 144 (320)
T PRK05802 65 YECKIIKKENIEDNLIILTLKVPHKLARDLVYPGSFVFLRNKNSSSFFDVPISIMEADTEENIIKVAIEIRGVKTKKIAK 144 (320)
T ss_pred EeEEEEEEEEecCCEEEEEEECCchhhhccCCCCceEEEEEcCCCCEeEEeeEecccCCCCCEEEEEEEecChhHHHHhc
Confidence 4578999999999999999998754 3479999999999866667789999999875 57899999999999998864
Q ss_pred HHhhccCCCCCCCCccchhhhccCCCCCCeEEEeCCCCCC--CCC---CCCCCEEEEEEcCcchhhHHHHHHHHHHhccc
Q 002525 680 VFSEVCQPAPAGKSGLLRAERENNSRGFPKILIDGPYGAP--AQD---YKKYDVVLLVGLGIGATPMISIVKDIINNMKS 754 (912)
Q Consensus 680 ~~~~~~~~~~~g~sg~~~~~~~~~~~~~~~v~IdGPYG~~--~~~---~~~y~~vllVagGiGITP~lsiL~~l~~~~~~ 754 (912)
+- .+..+.|.||||.. ... ....+.+|+|||||||||+++++++++++
T Consensus 145 l~------------------------~Gd~l~v~GP~GnG~F~l~~~~~~~~~~~llIaGGiGIaPl~~l~~~l~~~--- 197 (320)
T PRK05802 145 LN------------------------KGDEILLRGPYWNGILGLKNIKSTKNGKSLVIARGIGQAPGVPVIKKLYSN--- 197 (320)
T ss_pred CC------------------------CCCEEEEeCCCCcCcCCcccccccCCCeEEEEEeEEeHHHHHHHHHHHHHc---
Confidence 22 47789999999753 211 12346899999999999999999998754
Q ss_pred cCccccccccccCCCCCCCCCcceEEEEEEeCCCCcHHHHHHHHHHHH
Q 002525 755 EDNNLESGLTVNNNNKNSSFNTRKAYFYWVTREQGSFEWFKGIMNEVA 802 (912)
Q Consensus 755 ~~~~~~~~~~~~~~~~~~~~~~~rv~l~W~~R~~~~~~wf~~~L~el~ 802 (912)
..+++++|..|+.+++ ++.++++++.
T Consensus 198 ---------------------~~~v~li~g~r~~~~~-~~~~el~~~~ 223 (320)
T PRK05802 198 ---------------------GNKIIVIIDKGPFKNN-FIKEYLELYN 223 (320)
T ss_pred ---------------------CCcEEEEEeCCCHHHH-HHHHHHHHhh
Confidence 1369999999999987 6788777664
No 56
>cd06182 CYPOR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPOR has a C-terminal ferredoxin reducatase (FNR)- like FAD and NAD binding module, an FMN-binding domain, and an additional conecting domain (inserted within the FAD binding region) that orients the FNR and FMN binding domains. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria and participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-t
Probab=99.88 E-value=3.7e-21 Score=208.72 Aligned_cols=208 Identities=15% Similarity=0.235 Sum_probs=147.7
Q ss_pred cCCEEEEEEecC--CCccccCccEEEEEeCCCCCCcccceeeeecCCC--CeEEEEEEec-----------CcchHHHHH
Q 002525 615 PGNVLALHMSKP--QGFKYKSGQYMFVNCAAVSPFEWHPFSITSSPGD--DYLSVHIRTL-----------GDWTRQLKT 679 (912)
Q Consensus 615 ~~~v~~l~~~~p--~~~~~~pGQyv~l~~p~~s~~e~HPFTIaS~p~~--~~l~l~Ir~~-----------G~~T~~L~~ 679 (912)
|.+|.+|+|..| ..+.|+||||+.|.+|. ...+|||||+|.|++ +.+.|+||.. |..|..|.+
T Consensus 14 ~~~v~~l~l~~~~~~~~~~~pGQ~v~l~~~~--~~~~R~ySias~p~~~~~~l~l~Ik~~~~~~~~~~~~~G~~S~~L~~ 91 (267)
T cd06182 14 PRSTRHLEFDLSGNSVLKYQPGDHLGVIPPN--PLQPRYYSIASSPDVDPGEVHLCVRVVSYEAPAGRIRKGVCSNFLAG 91 (267)
T ss_pred CCceEEEEEecCCCCcCccCCCCEEEEecCC--CCCCeeEeecCCCCCCCCEEEEEEEEEEEecCCCCeeccchhHHHhh
Confidence 358999999988 57889999999999875 457899999999964 7899999987 778888764
Q ss_pred HHhhccCCCCCCCCccchhhhccCCCCCCeEEEeCCCC-CCCCCCCCCCEEEEEEcCcchhhHHHHHHHHHHhccccCcc
Q 002525 680 VFSEVCQPAPAGKSGLLRAERENNSRGFPKILIDGPYG-APAQDYKKYDVVLLVGLGIGATPMISIVKDIINNMKSEDNN 758 (912)
Q Consensus 680 ~~~~~~~~~~~g~sg~~~~~~~~~~~~~~~v~IdGPYG-~~~~~~~~y~~vllVagGiGITP~lsiL~~l~~~~~~~~~~ 758 (912)
+. .+..+.|.||+| .+..+....+.+|||||||||||++|++++++.......
T Consensus 92 lk------------------------~Gd~v~v~~p~G~~f~l~~~~~~~~vlIAgGtGIaP~~s~l~~~~~~~~~~~-- 145 (267)
T cd06182 92 LQ------------------------LGAKVTVFIRPAPSFRLPKDPTTPIIMVGPGTGIAPFRGFLQERAALRANGK-- 145 (267)
T ss_pred CC------------------------CCCEEEEEEecCCcccCCCCCCCCEEEEecCccHHHHHHHHHHHHHhhhccc--
Confidence 21 477999999999 665443335689999999999999999999876321110
Q ss_pred ccccccccCCCCCCCCCcceEEEEEEeCCC-CcHHHHHHHHHHHHhhcCCCcEEEEEeeccccCCCChhHHHHHHHhhhc
Q 002525 759 LESGLTVNNNNKNSSFNTRKAYFYWVTREQ-GSFEWFKGIMNEVAEMDEKRVIELHNYCTSVYEEGDARSALIAMLQSLH 837 (912)
Q Consensus 759 ~~~~~~~~~~~~~~~~~~~rv~l~W~~R~~-~~~~wf~~~L~el~~~~~~~~i~i~iy~T~~~~~~d~~s~l~~~~q~l~ 837 (912)
...+++|+|++|+. +++ .|.+.|.++++.. ..++++..+++........
T Consensus 146 ----------------~~~~v~l~~g~r~~~~d~-~~~del~~~~~~~--~~~~~~~~~S~~~~~~~~~----------- 195 (267)
T cd06182 146 ----------------ARGPAWLFFGCRNFASDY-LYREELQEALKDG--ALTRLDVAFSREQAEPKVY----------- 195 (267)
T ss_pred ----------------cCCCEEEEEeCCCCcccc-cHHHHHHHHHhCC--CcceEEEEEccCCCCCcee-----------
Confidence 14679999999999 887 6888898887742 3567777666431100000
Q ss_pred cccCCcccccCCccccccCCCCHHHHHHHHHhhCCCCeEEEEEeCChH-HHHHHHHHHHhhcc
Q 002525 838 HAKNGVDVVSGTRVKSHFAKPNWRQVYKRIALHHPDSRIGVFYCGAPA-LTKELRQLASDFSH 899 (912)
Q Consensus 838 ~~~~~~d~~sg~~v~~~~gRPd~~~vl~~~~~~~~~~~v~V~~CGP~~-m~~~vr~~~~~~~~ 899 (912)
+.. .+ .-+ .+.+.+... . ...||+|||++ |++.+.+++.+...
T Consensus 196 --------v~~-~l-----~~~-~~~l~~~l~---~-~~~vyvCGp~~~m~~~v~~~L~~~~~ 239 (267)
T cd06182 196 --------VQD-KL-----KEH-AEELRRLLN---E-GAHIYVCGDAKSMAKDVEDALVKIIA 239 (267)
T ss_pred --------hHH-HH-----HHh-HHHHHHHHh---c-CCEEEEECCcccchHHHHHHHHHHHH
Confidence 000 00 000 011111111 1 22799999999 99999999888743
No 57
>cd06200 SiR_like1 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD
Probab=99.88 E-value=4.3e-21 Score=205.84 Aligned_cols=196 Identities=12% Similarity=0.198 Sum_probs=139.3
Q ss_pred CEEEEEEecC-CCccccCccEEEEEeCCCCCCcccceeeeecCCCCeEEEEEEecCc-------chHHHHHHHhhccCCC
Q 002525 617 NVLALHMSKP-QGFKYKSGQYMFVNCAAVSPFEWHPFSITSSPGDDYLSVHIRTLGD-------WTRQLKTVFSEVCQPA 688 (912)
Q Consensus 617 ~v~~l~~~~p-~~~~~~pGQyv~l~~p~~s~~e~HPFTIaS~p~~~~l~l~Ir~~G~-------~T~~L~~~~~~~~~~~ 688 (912)
++.+|++..+ ..+.|+||||+.|.++. ...+|||||+|.|.++.++|+||..++ .|..|.+..
T Consensus 17 ~v~~l~l~~~~~~~~f~pGQ~v~l~~~~--~~~~R~YSIas~p~~~~l~l~Vk~~~~~~~~~G~~S~~L~~~~------- 87 (245)
T cd06200 17 PLWRLRLTPPDAGAQWQAGDIAEIGPRH--PLPHREYSIASLPADGALELLVRQVRHADGGLGLGSGWLTRHA------- 87 (245)
T ss_pred ceEEEEEecCCCCCCccCCcEEEecCCC--CCCCcceEeccCCCCCEEEEEEEEeccCCCCCeeechhhhhCC-------
Confidence 5999999987 57899999999999764 467899999999988899999998743 788777643
Q ss_pred CCCCCccchhhhccCCCCCCeEEEeCCCCCCCCCCCCCCEEEEEEcCcchhhHHHHHHHHHHhccccCccccccccccCC
Q 002525 689 PAGKSGLLRAERENNSRGFPKILIDGPYGAPAQDYKKYDVVLLVGLGIGATPMISIVKDIINNMKSEDNNLESGLTVNNN 768 (912)
Q Consensus 689 ~~g~sg~~~~~~~~~~~~~~~v~IdGPYG~~~~~~~~y~~vllVagGiGITP~lsiL~~l~~~~~~~~~~~~~~~~~~~~ 768 (912)
..+.+|.|.||.|...........+||||||+||||++|+++++..+.
T Consensus 88 ----------------~~Gd~v~i~gp~gg~F~~~~~~~~~vlIAgGtGIaP~~s~l~~~~~~~---------------- 135 (245)
T cd06200 88 ----------------PIGASVALRLRENPGFHLPDDGRPLILIGNGTGLAGLRSHLRARARAG---------------- 135 (245)
T ss_pred ----------------CCCCEEEEEecCCCcccCCCCCCCEEEEecCcChHHHHHHHHHHHhcc----------------
Confidence 247899999987643322223468999999999999999999986431
Q ss_pred CCCCCCCcceEEEEEEeCCCC-cHHHHHHHHHHHHhhcCCCcEEEEEeeccccCCCChhHHHHHHHhhhccccCCccccc
Q 002525 769 NKNSSFNTRKAYFYWVTREQG-SFEWFKGIMNEVAEMDEKRVIELHNYCTSVYEEGDARSALIAMLQSLHHAKNGVDVVS 847 (912)
Q Consensus 769 ~~~~~~~~~rv~l~W~~R~~~-~~~wf~~~L~el~~~~~~~~i~i~iy~T~~~~~~d~~s~l~~~~q~l~~~~~~~d~~s 847 (912)
.+++.+++++|+.+ ++ .|.++++++++... ..+++..+|+... .
T Consensus 136 -------~~~~~l~~g~r~~~~d~-~~~~el~~~~~~~~--~~~~~~~~s~~~~--~----------------------- 180 (245)
T cd06200 136 -------RHRNWLLFGERQAAHDF-FCREELEAWQAAGH--LARLDLAFSRDQA--Q----------------------- 180 (245)
T ss_pred -------CCCeEEEEecCCccccH-hHHHHHHHHHHCCC--cceEEEEEccCCC--C-----------------------
Confidence 24688999999984 65 58888888876433 3555555554210 0
Q ss_pred CCccccccCCCCHHHHHH----HHHhhCCCCeEEEEEeCCh-HHHHHHHHHHHhhc
Q 002525 848 GTRVKSHFAKPNWRQVYK----RIALHHPDSRIGVFYCGAP-ALTKELRQLASDFS 898 (912)
Q Consensus 848 g~~v~~~~gRPd~~~vl~----~~~~~~~~~~v~V~~CGP~-~m~~~vr~~~~~~~ 898 (912)
+..+.+.+. ++..... ....||+|||+ +|++++++.+.+..
T Consensus 181 ---------~~~v~~~l~~~~~~~~~~~~-~~~~vy~CGp~~~m~~~v~~~l~~~~ 226 (245)
T cd06200 181 ---------KRYVQDRLRAAADELRAWVA-EGAAIYVCGSLQGMAPGVDAVLDEIL 226 (245)
T ss_pred ---------CcchHHHHHHhHHHHHHHHH-CCcEEEEECCchhhhHHHHHHHHHHH
Confidence 001111111 1111001 12479999999 99999999876654
No 58
>PLN03115 ferredoxin--NADP(+) reductase; Provisional
Probab=99.87 E-value=4.3e-21 Score=214.94 Aligned_cols=220 Identities=15% Similarity=0.225 Sum_probs=152.7
Q ss_pred EEEEEEEec-----CCEEEEEEecCCCccccCccEEEEEeCCCC----CCcccceeeeecCC-----CCeEEEEEEec--
Q 002525 607 KILKVAVYP-----GNVLALHMSKPQGFKYKSGQYMFVNCAAVS----PFEWHPFSITSSPG-----DDYLSVHIRTL-- 670 (912)
Q Consensus 607 ~i~~v~~~~-----~~v~~l~~~~p~~~~~~pGQyv~l~~p~~s----~~e~HPFTIaS~p~-----~~~l~l~Ir~~-- 670 (912)
+++....+. ++|.+|++..+..+.|+||||+.|.+|... +..++||||+|.|. ++.++|+||..
T Consensus 94 ~v~~n~~i~~~~~~~~v~~l~l~~~~~~~f~~GQfv~I~~~g~~~~g~p~~~R~YSIAS~p~~~~~~~~~l~L~Vk~~~y 173 (367)
T PLN03115 94 RCLLNTKITGDDAPGETWHMVFSTEGEIPYREGQSIGVIPDGIDKNGKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVY 173 (367)
T ss_pred EEEeecccccCCCCCceEEEEEcCCCCCCcCCCCEEEEEcCCcCCCCCcCceeeeecCCCCcccCCCCCEEEEEEEEEEe
Confidence 455444443 489999998877899999999999987532 34679999999983 35899999964
Q ss_pred ---------CcchHHHHHHHhhccCCCCCCCCccchhhhccCCCCCCeEEEeCCCCCCCCCC-CCCCEEEEEEcCcchhh
Q 002525 671 ---------GDWTRQLKTVFSEVCQPAPAGKSGLLRAERENNSRGFPKILIDGPYGAPAQDY-KKYDVVLLVGLGIGATP 740 (912)
Q Consensus 671 ---------G~~T~~L~~~~~~~~~~~~~g~sg~~~~~~~~~~~~~~~v~IdGPYG~~~~~~-~~y~~vllVagGiGITP 740 (912)
|..|..|.+ + ..+..|.|.||+|.+.... .....+||||||+||||
T Consensus 174 ~~~~g~~~~G~~S~~L~~-L-----------------------k~Gd~V~v~GP~G~~fllp~~~~~~iImIAgGTGIAP 229 (367)
T PLN03115 174 TNDQGEIVKGVCSNFLCD-L-----------------------KPGAEVKITGPVGKEMLMPKDPNATIIMLATGTGIAP 229 (367)
T ss_pred ecCCCccCCeehHhhHhh-C-----------------------CCcCEEEEEeecCCceeCCcCCCCCEEEEeCCeeHHH
Confidence 567777766 2 2578999999999864322 23357999999999999
Q ss_pred HHHHHHHHHHhccccCccccccccccCCCCCCCCCcceEEEEEEeCCCCcHHHHHHHHHHHHhhcCCCcEEEEEeecccc
Q 002525 741 MISIVKDIINNMKSEDNNLESGLTVNNNNKNSSFNTRKAYFYWVTREQGSFEWFKGIMNEVAEMDEKRVIELHNYCTSVY 820 (912)
Q Consensus 741 ~lsiL~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~l~W~~R~~~~~~wf~~~L~el~~~~~~~~i~i~iy~T~~~ 820 (912)
++|+|++++....... .....++|+|++|+.+++ +|.++|+++++..+ .+++++..+++..
T Consensus 230 ~rs~L~~~~~~~~~~~-----------------~~~~~v~Lf~G~R~~~dl-ly~dELe~l~~~~p-~~f~v~~a~SR~~ 290 (367)
T PLN03115 230 FRSFLWKMFFEKHDDY-----------------KFNGLAWLFLGVPTSSSL-LYKEEFEKMKEKAP-ENFRLDFAVSREQ 290 (367)
T ss_pred HHHHHHHHHhhccccc-----------------cCCCcEEEEEccCCHHHh-hHHHHHHHHHHhCC-CCEEEEEEEcCCC
Confidence 9999998764321100 013579999999999887 78888988876543 3578887777542
Q ss_pred CCCChhHHHHHHHhhhccccCCcccccCCccccccCCCCHHHHHHH----HHhhCCCCeEEEEEeCChHHHHHHHHHHHh
Q 002525 821 EEGDARSALIAMLQSLHHAKNGVDVVSGTRVKSHFAKPNWRQVYKR----IALHHPDSRIGVFYCGAPALTKELRQLASD 896 (912)
Q Consensus 821 ~~~d~~s~l~~~~q~l~~~~~~~d~~sg~~v~~~~gRPd~~~vl~~----~~~~~~~~~v~V~~CGP~~m~~~vr~~~~~ 896 (912)
+.. .|.+ ++ +.+.+.+ +...-......||+|||++|++.|.++..+
T Consensus 291 ~~~-----------------------~G~k-----gy--Vqd~i~e~~e~l~~~l~~~~~~vYiCGp~~M~~~V~~~l~~ 340 (367)
T PLN03115 291 TNA-----------------------KGEK-----MY--IQTRMAEYAEELWELLKKDNTYVYMCGLKGMEKGIDDIMVS 340 (367)
T ss_pred ccc-----------------------CCcc-----ee--ehhHHHHHHHHHHhhcccCCeEEEEeCCHHHHHHHHHHHHH
Confidence 110 0110 00 1122221 111111234689999999999999988877
Q ss_pred hcc
Q 002525 897 FSH 899 (912)
Q Consensus 897 ~~~ 899 (912)
+..
T Consensus 341 l~~ 343 (367)
T PLN03115 341 LAA 343 (367)
T ss_pred HHH
Confidence 654
No 59
>PTZ00319 NADH-cytochrome B5 reductase; Provisional
Probab=99.87 E-value=4.9e-21 Score=211.11 Aligned_cols=221 Identities=14% Similarity=0.239 Sum_probs=154.6
Q ss_pred hcccceEEEEEEEecCCEEEEEEecCC---CccccCccEEEEEeCCCC----CCcccceeeeecCC-CCeEEEEEEec--
Q 002525 601 SSIEPVKILKVAVYPGNVLALHMSKPQ---GFKYKSGQYMFVNCAAVS----PFEWHPFSITSSPG-DDYLSVHIRTL-- 670 (912)
Q Consensus 601 ~~~~~~~i~~v~~~~~~v~~l~~~~p~---~~~~~pGQyv~l~~p~~s----~~e~HPFTIaS~p~-~~~l~l~Ir~~-- 670 (912)
..++.++|++++.+++++..++++.+. .+.|+||||+.|+++.-+ ...+||||++|.|. ++.++|+||..
T Consensus 31 ~~~~~~~v~~~~~~s~d~~~~~~~~~~~~~~~~~~pGQfi~l~~~~~~~~~~~~~~R~YS~~s~~~~~~~i~~~Ik~~~~ 110 (300)
T PTZ00319 31 DMFQHFKLIKKTEVTHDTFIFRFALHSPTQRLGLPIGQHIVFRCDCTTPGKPETVQHSYTPISSDDEKGYVDFLIKVYFK 110 (300)
T ss_pred CceEEEEEEEEEEcCCCceEEEEECCCCcccCCCccceEEEEEEEeCCCCccceEEeeeccCCCcccCCEEEEEEEEecc
Confidence 345678899999999999999997643 267999999999997532 14689999999886 57899999986
Q ss_pred ---------CcchHHHHHHHhhccCCCCCCCCccchhhhccCCCCCCeEEEeCCCCCCCCCC---------------CCC
Q 002525 671 ---------GDWTRQLKTVFSEVCQPAPAGKSGLLRAERENNSRGFPKILIDGPYGAPAQDY---------------KKY 726 (912)
Q Consensus 671 ---------G~~T~~L~~~~~~~~~~~~~g~sg~~~~~~~~~~~~~~~v~IdGPYG~~~~~~---------------~~y 726 (912)
|..|+.|.. + ..+..+.|.||+|.+...- ...
T Consensus 111 ~~~~~~~~~G~~S~~L~~-l-----------------------~~Gd~v~i~gP~G~f~~~~~~~~~~~~~~~~~~~~~~ 166 (300)
T PTZ00319 111 GVHPSFPNGGRLSQHLYH-M-----------------------KLGDKIEMRGPVGKFEYLGNGTYTVHKGKGGLKTMHV 166 (300)
T ss_pred CCCCCCCCCCChhhhhhc-C-----------------------CCCCEEEEEccceeeEecCCcceeecccccccccccc
Confidence 788888843 2 2578999999999863210 123
Q ss_pred CEEEEEEcCcchhhHHHHHHHHHHhccccCccccccccccCCCCCCCCCcceEEEEEEeCCCCcHHHHHHHHHHHHhhcC
Q 002525 727 DVVLLVGLGIGATPMISIVKDIINNMKSEDNNLESGLTVNNNNKNSSFNTRKAYFYWVTREQGSFEWFKGIMNEVAEMDE 806 (912)
Q Consensus 727 ~~vllVagGiGITP~lsiL~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~l~W~~R~~~~~~wf~~~L~el~~~~~ 806 (912)
+.++||||||||||++|+++.++.+.. ..++++|+|++|+.+++ .|.++|.++++
T Consensus 167 ~~illIAgGtGIaP~~sml~~l~~~~~---------------------~~~~i~liyg~r~~~dl-~~~~eL~~~~~--- 221 (300)
T PTZ00319 167 DAFAMIAGGTGITPMLQIIHAIKKNKE---------------------DRTKVFLVYANQTEDDI-LLRKELDEAAK--- 221 (300)
T ss_pred ceEEEEecCcccCHHHHHHHHHHhCCC---------------------CCceEEEEEecCCHHHh-hHHHHHHHHhh---
Confidence 579999999999999999999875421 13589999999999997 57777777432
Q ss_pred CCcEEEEEeeccccCCCChhHHHHHHHhhhccccCCcccccCCccccccCCCCHHHHHHHHHhhCC-----CCeEEEEEe
Q 002525 807 KRVIELHNYCTSVYEEGDARSALIAMLQSLHHAKNGVDVVSGTRVKSHFAKPNWRQVYKRIALHHP-----DSRIGVFYC 881 (912)
Q Consensus 807 ~~~i~i~iy~T~~~~~~d~~s~l~~~~q~l~~~~~~~d~~sg~~v~~~~gRPd~~~vl~~~~~~~~-----~~~v~V~~C 881 (912)
..+++++..+++...+ +. .| +.||-+- .++++...... ..+..||+|
T Consensus 222 ~~~~~~~~~~~~~~~~-~~---------------------~~-----~~G~v~~-~~l~~~~~~~~~~~~~~~~~~vyiC 273 (300)
T PTZ00319 222 DPRFHVWYTLDREATP-EW---------------------KY-----GTGYVDE-EMLRAHLPVPDPQNSGIKKVMALMC 273 (300)
T ss_pred CCCEEEEEEECCCCCC-Cc---------------------cc-----ccceeCH-HHHHhhcCCccccccccCCeEEEEE
Confidence 2357777666542110 00 00 1244332 23333221110 024679999
Q ss_pred CChHHHH-HHHHHHHhhc
Q 002525 882 GAPALTK-ELRQLASDFS 898 (912)
Q Consensus 882 GP~~m~~-~vr~~~~~~~ 898 (912)
||++|++ .+++...+..
T Consensus 274 Gp~~mv~~~~~~~L~~~G 291 (300)
T PTZ00319 274 GPPPMLQMAVKPNLEKIG 291 (300)
T ss_pred CCHHHHHHHHHHHHHHcC
Confidence 9999999 5677776653
No 60
>KOG0534 consensus NADH-cytochrome b-5 reductase [Coenzyme transport and metabolism; Energy production and conversion]
Probab=99.86 E-value=2.3e-20 Score=199.33 Aligned_cols=223 Identities=15% Similarity=0.239 Sum_probs=174.5
Q ss_pred cccceEEEEEEEecCCEEEEEEecCC---CccccCccEEEEEeCCCCCCcccceeeeecCCC-CeEEEEEEec--CcchH
Q 002525 602 SIEPVKILKVAVYPGNVLALHMSKPQ---GFKYKSGQYMFVNCAAVSPFEWHPFSITSSPGD-DYLSVHIRTL--GDWTR 675 (912)
Q Consensus 602 ~~~~~~i~~v~~~~~~v~~l~~~~p~---~~~~~pGQyv~l~~p~~s~~e~HPFTIaS~p~~-~~l~l~Ir~~--G~~T~ 675 (912)
.|..+++.+.+.++.|+..++|..|. .+....|||+++..|..+..-.+|||..|.+.+ +++.+.||.. |-.|+
T Consensus 50 ~~~~~~l~~k~~~shdt~~f~f~lp~~~~~l~lp~g~hv~~~~~i~g~~vvRpYTPvs~~~~~g~~~l~VK~Y~~G~mS~ 129 (286)
T KOG0534|consen 50 SYYPFRLIDKTELSHDTSLFRFVLPSADHVLGLPIGQHVVLKAPIGGKLVVRPYTPVSLDDDKGYFDLVVKVYPKGKMSQ 129 (286)
T ss_pred ceEEEEEEEEEeccCCceeEEEecCCchhccCcccceEEEEEecCCCcEEEEecCCccCccccceEEEEEEeccCCcccH
Confidence 36778899999999999988888874 366889999999999887788999999999877 7999999987 88998
Q ss_pred HHHHHHhhccCCCCCCCCccchhhhccCCCCCCeEEEeCCCCCCCCCCCCCCEEEEEEcCcchhhHHHHHHHHHHhcccc
Q 002525 676 QLKTVFSEVCQPAPAGKSGLLRAERENNSRGFPKILIDGPYGAPAQDYKKYDVVLLVGLGIGATPMISIVKDIINNMKSE 755 (912)
Q Consensus 676 ~L~~~~~~~~~~~~~g~sg~~~~~~~~~~~~~~~v~IdGPYG~~~~~~~~y~~vllVagGiGITP~lsiL~~l~~~~~~~ 755 (912)
.|..+- .+..|.+.||.|....+...++++.+||||+|||||++++++++.+..+
T Consensus 130 ~l~~Lk------------------------iGd~ve~rGP~G~~~~~~~~~~~l~miAgGtGItPmlqii~~il~~~~d- 184 (286)
T KOG0534|consen 130 HLDSLK------------------------IGDTVEFRGPIGEFKYDPQKAKHLGMIAGGTGITPMLQLIRAILKDPED- 184 (286)
T ss_pred HHhcCC------------------------CCCEEEEecCccceEecCCCcceEEEEecccchhhHHHHHHHHhcCCCC-
Confidence 887543 5789999999999765555689999999999999999999999876332
Q ss_pred CccccccccccCCCCCCCCCcceEEEEEEeCCCCcHHHHHHHHHHHHhhcCCCcEEEEEeeccccCCCChhHHHHHHHhh
Q 002525 756 DNNLESGLTVNNNNKNSSFNTRKAYFYWVTREQGSFEWFKGIMNEVAEMDEKRVIELHNYCTSVYEEGDARSALIAMLQS 835 (912)
Q Consensus 756 ~~~~~~~~~~~~~~~~~~~~~~rv~l~W~~R~~~~~~wf~~~L~el~~~~~~~~i~i~iy~T~~~~~~d~~s~l~~~~q~ 835 (912)
..++++++++++++++ |++++|++++..++. .+.++.++++..+..+.
T Consensus 185 --------------------~tki~lly~N~te~DI-Llr~eL~~la~~~p~-rf~~~y~v~~~~~~w~~---------- 232 (286)
T KOG0534|consen 185 --------------------TTKISLLYANKTEDDI-LLREELEELASKYPE-RFKVWYVVDQPPEIWDG---------- 232 (286)
T ss_pred --------------------CcEEEEEEecCCcccc-chHHHHHHHHhhCcc-eEEEEEEEcCCcccccC----------
Confidence 5789999999999998 899999999988764 78888877665321111
Q ss_pred hccccCCcccccCCccccccCCCCHHHHHHHHHhhCCCCeEEEEEeCChHHHHHHHHH-HHhhccC
Q 002525 836 LHHAKNGVDVVSGTRVKSHFAKPNWRQVYKRIALHHPDSRIGVFYCGAPALTKELRQL-ASDFSHK 900 (912)
Q Consensus 836 l~~~~~~~d~~sg~~v~~~~gRPd~~~vl~~~~~~~~~~~v~V~~CGP~~m~~~vr~~-~~~~~~~ 900 (912)
..|+++-+.+-..+....++ .+.|++||||+|++.+++. ...+..+
T Consensus 233 ------------------~~g~It~~~i~~~l~~~~~~-~~~~liCGPp~m~~~~~~~~le~Lg~~ 279 (286)
T KOG0534|consen 233 ------------------SVGFITKDLIKEHLPPPKEG-ETLVLICGPPPMINGAAQGNLEKLGYN 279 (286)
T ss_pred ------------------ccCccCHHHHHhhCCCCCCC-CeEEEEECCHHHHhHHHHHHHHhcCCC
Confidence 12566644443333333333 6899999999999864444 4434433
No 61
>cd06201 SiR_like2 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via F
Probab=99.86 E-value=4e-20 Score=202.95 Aligned_cols=211 Identities=15% Similarity=0.255 Sum_probs=149.3
Q ss_pred cccceEEEEEEEec----CCEEEEEEecCC-------CccccCccEEEEEeCCCCCCcccceeeeecCCCCeEEEEEEe-
Q 002525 602 SIEPVKILKVAVYP----GNVLALHMSKPQ-------GFKYKSGQYMFVNCAAVSPFEWHPFSITSSPGDDYLSVHIRT- 669 (912)
Q Consensus 602 ~~~~~~i~~v~~~~----~~v~~l~~~~p~-------~~~~~pGQyv~l~~p~~s~~e~HPFTIaS~p~~~~l~l~Ir~- 669 (912)
.+.++++++.+.++ +++..++|..|. ...|+||||+.|..++. ...|||||+|.|+++.+.|+||.
T Consensus 44 ~~~~~~l~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~pGQ~v~v~~~g~--~~~R~YSias~p~~g~l~l~Vk~~ 121 (289)
T cd06201 44 RTKALELVERKDYGAAVQAPTAILRFKPAKRKLSGKGLPSFEAGDLLGILPPGS--DVPRFYSLASSSSDGFLEICVRKH 121 (289)
T ss_pred CccceEEEeeeecCCCCCCccEEEEEeCCCcccccCCCCCcCccCEEEEecCCC--CCCceEecCCCCCCCeEEEEEEeC
Confidence 45678899999887 599999999876 46799999999986543 35799999999988899999997
Q ss_pred -cCcchHHHHHHHhhccCCCCCCCCccchhhhccCCCCCCeEEEe-CCCCCCCCCCCCCCEEEEEEcCcchhhHHHHHHH
Q 002525 670 -LGDWTRQLKTVFSEVCQPAPAGKSGLLRAERENNSRGFPKILID-GPYGAPAQDYKKYDVVLLVGLGIGATPMISIVKD 747 (912)
Q Consensus 670 -~G~~T~~L~~~~~~~~~~~~~g~sg~~~~~~~~~~~~~~~v~Id-GPYG~~~~~~~~y~~vllVagGiGITP~lsiL~~ 747 (912)
.|..|+.|.+ + +.+..+.+. +|+|.+..+ ...+.+|||||||||||++|++++
T Consensus 122 ~~G~~S~~L~~-l-----------------------~~Gd~v~v~~~~~g~F~~~-~~~~~lvlIAgGtGIaP~~s~l~~ 176 (289)
T cd06201 122 PGGLCSGYLHG-L-----------------------KPGDTIKAFIRPNPSFRPA-KGAAPVILIGAGTGIAPLAGFIRA 176 (289)
T ss_pred CCccchhhHhh-C-----------------------CCcCEEEEEeccCCCccCC-CCCCCEEEEecCcCHHHHHHHHHh
Confidence 5788988875 3 146778887 478877543 345689999999999999999987
Q ss_pred HHHhccccCccccccccccCCCCCCCCCcceEEEEEEeCCCC-cHHHHHHHHHHHHhhcCCCcEEEEEeeccccCCCChh
Q 002525 748 IINNMKSEDNNLESGLTVNNNNKNSSFNTRKAYFYWVTREQG-SFEWFKGIMNEVAEMDEKRVIELHNYCTSVYEEGDAR 826 (912)
Q Consensus 748 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~l~W~~R~~~-~~~wf~~~L~el~~~~~~~~i~i~iy~T~~~~~~d~~ 826 (912)
.. ..++++|+|++|+.+ ++ .|+++|+++++..+ .+.++..+++....+-.
T Consensus 177 ~~-------------------------~~~~v~L~~g~r~~~~d~-~~~~eL~~l~~~~~--~~~~~~~~s~~~~~g~v- 227 (289)
T cd06201 177 NA-------------------------ARRPMHLYWGGRDPASDF-LYEDELDQYLADGR--LTQLHTAFSRTPDGAYV- 227 (289)
T ss_pred hh-------------------------ccCCEEEEEEecCcccch-HHHHHHHHHHHcCC--CceEEEEECCCCCcccc-
Confidence 41 135799999999985 55 68899988876543 34455444432110000
Q ss_pred HHHHHHHhhhccccCCcccccCCccccccCCCCHHHHHHHHHhhCCCCeEEEEEeCChHHHHHHHHHHHhhcc
Q 002525 827 SALIAMLQSLHHAKNGVDVVSGTRVKSHFAKPNWRQVYKRIALHHPDSRIGVFYCGAPALTKELRQLASDFSH 899 (912)
Q Consensus 827 s~l~~~~q~l~~~~~~~d~~sg~~v~~~~gRPd~~~vl~~~~~~~~~~~v~V~~CGP~~m~~~vr~~~~~~~~ 899 (912)
. ...|-+... +..... ....||+|||++|++.+++.+.+...
T Consensus 228 --------------------~------~~l~~~~~~-l~~~~~----~~~~vyiCGp~~M~~~v~~~L~~i~~ 269 (289)
T cd06201 228 --------------------Q------DRLRADAER-LRRLIE----DGAQIMVCGSRAMAQGVAAVLEEILA 269 (289)
T ss_pred --------------------h------hHHHHhHHH-HHHHHH----CCcEEEEECCHHHHHHHHHHHHHHHH
Confidence 0 000111111 111111 13469999999999999998877654
No 62
>COG0543 UbiB 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=99.86 E-value=4.4e-20 Score=198.45 Aligned_cols=203 Identities=25% Similarity=0.380 Sum_probs=151.9
Q ss_pred ceEEEEEEEecCCEEEEEEecCCC-ccccCccEEEEEeCCCCCCcccceeeeecCCC-CeEEEEEEe--cCcchHHHHHH
Q 002525 605 PVKILKVAVYPGNVLALHMSKPQG-FKYKSGQYMFVNCAAVSPFEWHPFSITSSPGD-DYLSVHIRT--LGDWTRQLKTV 680 (912)
Q Consensus 605 ~~~i~~v~~~~~~v~~l~~~~p~~-~~~~pGQyv~l~~p~~s~~e~HPFTIaS~p~~-~~l~l~Ir~--~G~~T~~L~~~ 680 (912)
.++|.+++.+++++..+.+..|.. +.++||||+.|+.|. ....||||+|.|++ +.+.++|+. .|..|+.+..+
T Consensus 9 ~~~I~~~~~is~~~~~l~~~~~~~~~~~~pGQfv~l~~~~---~~~~P~si~~~~~~~g~~~l~i~~~~~G~~T~~i~~~ 85 (252)
T COG0543 9 SYKVVEKEEISPDTFLLRLRLPFVALTFKPGQFVMLRVPG---GVRRPYSLASAPDDKGELELHIRVYEVGKVTKYIFGL 85 (252)
T ss_pred ccEEEEEEEecCceEEEEEeccccccccCCCcEEEEEeCC---CcEEEeeeccCCCcCCcEEEEEEEEeCChHHHHHhhc
Confidence 378999999999999999988754 679999999999998 58999999999974 556666655 79999988865
Q ss_pred HhhccCCCCCCCCccchhhhccCCCCCCeEEEeCCCCCCCCCCCCCCEEEEEEcCcchhhHHHHHHHHHHhccccCcccc
Q 002525 681 FSEVCQPAPAGKSGLLRAERENNSRGFPKILIDGPYGAPAQDYKKYDVVLLVGLGIGATPMISIVKDIINNMKSEDNNLE 760 (912)
Q Consensus 681 ~~~~~~~~~~g~sg~~~~~~~~~~~~~~~v~IdGPYG~~~~~~~~y~~vllVagGiGITP~lsiL~~l~~~~~~~~~~~~ 760 (912)
. .+..+.|.||||.+.......+.+++||||+|++|++++++++..+. .
T Consensus 86 k------------------------~gd~i~v~GP~G~~~~~~~~~~~vlliagGtG~aPl~~i~~~~~~~~-~------ 134 (252)
T COG0543 86 K------------------------EGDKIRVRGPLGNGFLREKIGKPVLLIAGGTGIAPLYAIAKELKEKG-D------ 134 (252)
T ss_pred c------------------------CCCEEEEEcCCCCCccccccCCcEEEEecccCHhHHHHHHHHHHhcC-C------
Confidence 2 35679999999998754333445999999999999999999997652 1
Q ss_pred ccccccCCCCCCCCCcceEEEEEEeCCCCcHHHHHHHHHHHHhhcCCCcEEEEEeeccccCCCChhHHHHHHHhhhcccc
Q 002525 761 SGLTVNNNNKNSSFNTRKAYFYWVTREQGSFEWFKGIMNEVAEMDEKRVIELHNYCTSVYEEGDARSALIAMLQSLHHAK 840 (912)
Q Consensus 761 ~~~~~~~~~~~~~~~~~rv~l~W~~R~~~~~~wf~~~L~el~~~~~~~~i~i~iy~T~~~~~~d~~s~l~~~~q~l~~~~ 840 (912)
..+|+++|..|++.++ .+.+++.++++. +++. +|.. +.
T Consensus 135 ---------------~~~V~~~~G~~~~~dl-~~~~el~~~~~~------~~~~-~~~~----~~--------------- 172 (252)
T COG0543 135 ---------------ANKVTLLYGARTAKDL-LLLDELEELAEK------EVHP-VTDD----GW--------------- 172 (252)
T ss_pred ---------------CceEEEEEeccChhhc-ccHHHHHHhhcC------cEEE-EECC----CC---------------
Confidence 3789999999999998 567777776642 3333 2221 00
Q ss_pred CCcccccCCccccccCCCCH-HHHHHHHHhhCCCCeEEEEEeCChHHHHHHHHHHHhhcc
Q 002525 841 NGVDVVSGTRVKSHFAKPNW-RQVYKRIALHHPDSRIGVFYCGAPALTKELRQLASDFSH 899 (912)
Q Consensus 841 ~~~d~~sg~~v~~~~gRPd~-~~vl~~~~~~~~~~~v~V~~CGP~~m~~~vr~~~~~~~~ 899 (912)
.| . ..-+ .+++++.... +...||+||||+|++.+++.+.+...
T Consensus 173 ------~G-----~--~G~v~~~~~~~~~~~---~~~~v~~cGp~~M~~~v~~~~~~~g~ 216 (252)
T COG0543 173 ------KG-----R--KGFVTTDVLKELLDL---EVDDVYICGPPAMVKAVREKLKEYGV 216 (252)
T ss_pred ------Cc-----c--CcceeHHHHhhhccc---cCCEEEEECCHHHHHHHHHHHHhcCC
Confidence 00 0 1111 2444444322 23579999999999999999988763
No 63
>TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein. Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB.
Probab=99.85 E-value=5.4e-20 Score=210.78 Aligned_cols=166 Identities=13% Similarity=0.225 Sum_probs=125.3
Q ss_pred ceEEEEEEEec-----CCEEEEEEecCC-CccccCccEEEEEeCCC----CCCcccceeeeecCCC-----CeEEEEEEe
Q 002525 605 PVKILKVAVYP-----GNVLALHMSKPQ-GFKYKSGQYMFVNCAAV----SPFEWHPFSITSSPGD-----DYLSVHIRT 669 (912)
Q Consensus 605 ~~~i~~v~~~~-----~~v~~l~~~~p~-~~~~~pGQyv~l~~p~~----s~~e~HPFTIaS~p~~-----~~l~l~Ir~ 669 (912)
..+|+.++.+. ++|.+|++..+. .+.|+||||+.|.+|.. .+..+|||||+|.|++ +.++|+||.
T Consensus 144 ~a~V~~~~~l~~~~~~~~v~~l~L~~~~~~~~~~pGQfv~l~~pg~~~~g~~~~~R~YSIas~~~~~~~~~~~l~l~Vk~ 223 (411)
T TIGR03224 144 TATVVGNYRLTDEDASSDIHHIVLDFGSHPFPVLEGQSIGILPPGTDASGKPHYARMYSVASPRNGERPGYNNLALTVKR 223 (411)
T ss_pred EEEEeeeEEccCCCCCCceEEEEEeCCCCcCCccCCcEEEEecCCcCcCCCcCcceeeeecCCCCccCCCCCEEEEEEEE
Confidence 46788888884 499999998876 58899999999998853 2356899999998743 469999998
Q ss_pred c----------CcchHHHHHHHhhccCCCCCCCCccchhhhccCCCCCCeEEEeCCCCCCCC-CCCCCCEEEEEEcCcch
Q 002525 670 L----------GDWTRQLKTVFSEVCQPAPAGKSGLLRAERENNSRGFPKILIDGPYGAPAQ-DYKKYDVVLLVGLGIGA 738 (912)
Q Consensus 670 ~----------G~~T~~L~~~~~~~~~~~~~g~sg~~~~~~~~~~~~~~~v~IdGPYG~~~~-~~~~y~~vllVagGiGI 738 (912)
. |-.|+.|.+ + ..+.+|.|.||||.... +......+||||||+||
T Consensus 224 v~~~~~g~~~~G~~S~~L~~-l-----------------------k~Gd~v~v~GP~G~~f~lp~~~~~~lllIagGtGI 279 (411)
T TIGR03224 224 VTTDHQGNAVRGVASNYLCD-L-----------------------KKGDKVQVIGPFGSTFLMPNHPESSIMMICTGTGS 279 (411)
T ss_pred EEecCCCCcCcccchhHHhc-C-----------------------CCcCEEEEEeccCCcccCCCCCCCCEEEEecccCc
Confidence 6 667888876 3 25789999999998532 21223589999999999
Q ss_pred hhHHHHHHHHHHhccccCccccccccccCCCCCCCCCcceEEEEEEeCCCCcHHHHHHHHHHHHhhcCCCcEEEEEeecc
Q 002525 739 TPMISIVKDIINNMKSEDNNLESGLTVNNNNKNSSFNTRKAYFYWVTREQGSFEWFKGIMNEVAEMDEKRVIELHNYCTS 818 (912)
Q Consensus 739 TP~lsiL~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~l~W~~R~~~~~~wf~~~L~el~~~~~~~~i~i~iy~T~ 818 (912)
|||+|+++++....... ...+++|+|.+|+.+++ .|.+.|.++++. .+++++.+++
T Consensus 280 AP~~s~l~~~~~~~~~~-------------------~~~~v~L~~G~Rt~~dl-~y~~eL~~l~~~----~~~~~~~~sr 335 (411)
T TIGR03224 280 APMRAMTERRRRRRDHG-------------------EGGKLMLFFGARTKEEL-PYFGPLQKLPKD----FIDINFAFSR 335 (411)
T ss_pred HHHHHHHHHHHHHhhcC-------------------CCCCEEEEEecCccccc-hHHHHHHHHHhc----CceEEEEecc
Confidence 99999999987542211 14689999999999997 566777777642 2455554443
No 64
>PLN02252 nitrate reductase [NADPH]
Probab=99.85 E-value=5.9e-20 Score=225.87 Aligned_cols=223 Identities=13% Similarity=0.210 Sum_probs=163.5
Q ss_pred hcccceEEEEEEEecCCEEEEEEecCCC---ccccCccEEEEEeCCCCCCcccceeeeecCC-CCeEEEEEEec------
Q 002525 601 SSIEPVKILKVAVYPGNVLALHMSKPQG---FKYKSGQYMFVNCAAVSPFEWHPFSITSSPG-DDYLSVHIRTL------ 670 (912)
Q Consensus 601 ~~~~~~~i~~v~~~~~~v~~l~~~~p~~---~~~~pGQyv~l~~p~~s~~e~HPFTIaS~p~-~~~l~l~Ir~~------ 670 (912)
..+..+++++++.+++++..++|..|.. +.++|||||+|+++..+....||||++|.+. ++++.|+||..
T Consensus 632 ~~~~~~~Lv~k~~lS~d~~~f~f~lp~~~~~lgl~pGQhV~l~~~~~g~~~~R~YSpaS~~~~~g~lel~VK~~~~~~~~ 711 (888)
T PLN02252 632 REKIPCRLVEKISLSHDVRLFRFALPSEDHVLGLPVGKHVFLCATINGKLCMRAYTPTSSDDEVGHFELVIKVYFKNVHP 711 (888)
T ss_pred CceEEEEEEEEEEccCCeEEEEEEECCCcccCCCCCCCEEEEEEecCCeEEEeeeEecccCCCCCEEEEEEEEEeccccC
Confidence 3467789999999999999999987754 5789999999999754445689999999986 47899999986
Q ss_pred -----CcchHHHHHHHhhccCCCCCCCCccchhhhccCCCCCCeEEEeCCCCCCCC--------C--CCCCCEEEEEEcC
Q 002525 671 -----GDWTRQLKTVFSEVCQPAPAGKSGLLRAERENNSRGFPKILIDGPYGAPAQ--------D--YKKYDVVLLVGLG 735 (912)
Q Consensus 671 -----G~~T~~L~~~~~~~~~~~~~g~sg~~~~~~~~~~~~~~~v~IdGPYG~~~~--------~--~~~y~~vllVagG 735 (912)
|..|+.|.+ + +.+..|.|.||+|.+.. + ....+.++|||||
T Consensus 712 ~~p~gG~~S~~L~~-L-----------------------~vGd~V~V~GP~G~f~y~g~G~f~l~~~~~~~~~vvmIAGG 767 (888)
T PLN02252 712 KFPNGGLMSQYLDS-L-----------------------PIGDTIDVKGPLGHIEYAGRGSFLVNGKPKFAKKLAMLAGG 767 (888)
T ss_pred ccCCCCchhhHHhc-C-----------------------CCCCEEEEecCccceeecccceeeeccccccCceEEEEecc
Confidence 668887753 2 25789999999997521 1 1234689999999
Q ss_pred cchhhHHHHHHHHHHhccccCccccccccccCCCCCCCCCcceEEEEEEeCCCCcHHHHHHHHHHHHhhcCCCcEEEEEe
Q 002525 736 IGATPMISIVKDIINNMKSEDNNLESGLTVNNNNKNSSFNTRKAYFYWVTREQGSFEWFKGIMNEVAEMDEKRVIELHNY 815 (912)
Q Consensus 736 iGITP~lsiL~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~l~W~~R~~~~~~wf~~~L~el~~~~~~~~i~i~iy 815 (912)
+||||++++|++++.... ..++++|+|++|+.+++ .|+++|+++++..+ ..++++..
T Consensus 768 sGITPi~silr~ll~~~~---------------------d~t~i~Liyg~Rt~~Di-l~~eEL~~la~~~p-~~~~v~~v 824 (888)
T PLN02252 768 TGITPMYQVIQAILRDPE---------------------DKTEMSLVYANRTEDDI-LLREELDRWAAEHP-DRLKVWYV 824 (888)
T ss_pred eehhHHHHHHHHHHhccC---------------------CCCcEEEEEEECCHHHh-hHHHHHHHHHHhCC-CCEEEEEE
Confidence 999999999999986421 14689999999999997 78999999887543 35777765
Q ss_pred eccccCCCChhHHHHHHHhhhccccCCcccccCCccccccCCCCHHHHHHHHHhhCCCCeEEEEEeCChHHHHH-HHHHH
Q 002525 816 CTSVYEEGDARSALIAMLQSLHHAKNGVDVVSGTRVKSHFAKPNWRQVYKRIALHHPDSRIGVFYCGAPALTKE-LRQLA 894 (912)
Q Consensus 816 ~T~~~~~~d~~s~l~~~~q~l~~~~~~~d~~sg~~v~~~~gRPd~~~vl~~~~~~~~~~~v~V~~CGP~~m~~~-vr~~~ 894 (912)
+|+...+ + . .| ..||.+ +.++++..... .....||+|||++|++. ++..+
T Consensus 825 ls~~~~~-~------------------w---~g-----~~GrV~-~~ll~~~l~~~-~~~~~vyiCGPp~Mi~~av~~~L 875 (888)
T PLN02252 825 VSQVKRE-G------------------W---KY-----SVGRVT-EAMLREHLPEG-GDETLALMCGPPPMIEFACQPNL 875 (888)
T ss_pred ecCCCcC-C------------------C---CC-----cCCcCC-HHHHHHhcccC-CCCeEEEEeCCHHHHHHHHHHHH
Confidence 6542100 0 0 11 125554 23444443222 23467999999999995 77777
Q ss_pred Hhhcc
Q 002525 895 SDFSH 899 (912)
Q Consensus 895 ~~~~~ 899 (912)
.+...
T Consensus 876 ~~~G~ 880 (888)
T PLN02252 876 EKMGY 880 (888)
T ss_pred HHcCC
Confidence 76544
No 65
>PF08022 FAD_binding_8: FAD-binding domain; InterPro: IPR013112 This FAD binding domain is associated with ferric reductase NAD binding proteins and the heavy chain of Cytochrome b-245.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A.
Probab=99.81 E-value=1.6e-21 Score=181.12 Aligned_cols=100 Identities=39% Similarity=0.810 Sum_probs=7.2
Q ss_pred cceEEEEEEEecCCEEEEEEecCCC-ccccCccEEEEEeCCCC--CCcccceeeeecCCCCeEEEEEEecCcchHHHHHH
Q 002525 604 EPVKILKVAVYPGNVLALHMSKPQG-FKYKSGQYMFVNCAAVS--PFEWHPFSITSSPGDDYLSVHIRTLGDWTRQLKTV 680 (912)
Q Consensus 604 ~~~~i~~v~~~~~~v~~l~~~~p~~-~~~~pGQyv~l~~p~~s--~~e~HPFTIaS~p~~~~l~l~Ir~~G~~T~~L~~~ 680 (912)
.++++++++.+++++++|++++|.. ++|+||||+||++|.++ .||||||||+|+|.++.++++||..||||++|.+.
T Consensus 2 ~~~~~~~v~~~~~~~v~i~i~~~~~~~~~~pGq~v~l~~p~~s~~~~q~HPFTIas~~~~~~i~l~ik~~g~~T~~L~~~ 81 (105)
T PF08022_consen 2 FNVRIASVELLPDDVVEITIPKPSSPFKWKPGQYVFLSFPSISKWFWQWHPFTIASSPEDNSITLIIKARGGWTKRLYEH 81 (105)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CcEEEEEEEEcCCCEEEEEEECCCCCCCCCCceEEEEEEcCcCcCcccccccEeeccCCCCEEEEEEEeCCCchHHHHHH
Confidence 4577889999999999999999986 99999999999999999 56999999999999999999999999999999988
Q ss_pred HhhccCCCCCCCCccchhhhccCCCCCCeEEEeCCCCCC
Q 002525 681 FSEVCQPAPAGKSGLLRAERENNSRGFPKILIDGPYGAP 719 (912)
Q Consensus 681 ~~~~~~~~~~g~sg~~~~~~~~~~~~~~~v~IdGPYG~~ 719 (912)
+.+.. .......++.||||||++
T Consensus 82 ~~~~~----------------~~~~~~~~v~idGPYG~~ 104 (105)
T PF08022_consen 82 LSESP----------------SKQGNRLRVFIDGPYGAP 104 (105)
T ss_dssp -------------------------------TTSTTSHH
T ss_pred Hhhhc----------------ccCCCceEEEEECCCCCC
Confidence 74310 011246799999999975
No 66
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=99.80 E-value=1.9e-18 Score=215.45 Aligned_cols=212 Identities=14% Similarity=0.220 Sum_probs=148.1
Q ss_pred cccceEEEEEEEecCCEEEEEEecCCC-ccccCccEEEEEeCCCCCCcccceeeeecCC-CCeEEEEEEecCcchHHHHH
Q 002525 602 SIEPVKILKVAVYPGNVLALHMSKPQG-FKYKSGQYMFVNCAAVSPFEWHPFSITSSPG-DDYLSVHIRTLGDWTRQLKT 679 (912)
Q Consensus 602 ~~~~~~i~~v~~~~~~v~~l~~~~p~~-~~~~pGQyv~l~~p~~s~~e~HPFTIaS~p~-~~~l~l~Ir~~G~~T~~L~~ 679 (912)
.+..++|+++..+++++..+++..|.. ..++||||+.|.++..+ ++|||||++.|. ++.++|+||..|..|..|.+
T Consensus 647 ~~~~~~I~~~~~lt~dv~~~~l~~p~~~~~~~PGQFv~L~~~~~g--e~rP~SIas~~~~~g~i~l~Vk~vG~~T~~L~~ 724 (944)
T PRK12779 647 GQIPQTIVGKVQLAGGIVEFTVRAPMVARSAQAGQFVRVLPWEKG--ELIPLTLADWDAEKGTIDLVVQGMGTSSLEINR 724 (944)
T ss_pred cceEEEEEEEEEecCCEEEEEEeCCCccccCCCCceEEEEeCCCC--CEEeEEccCCCCCCCEEEEEEEeeccHHHHHhc
Confidence 356788999999999999999988764 47999999999986443 579999999875 67899999999988876643
Q ss_pred HHhhccCCCCCCCCccchhhhccCCCCCCeEE-EeCCCCCCCCC--CCCCCEEEEEEcCcchhhHHHHHHHHHHhccccC
Q 002525 680 VFSEVCQPAPAGKSGLLRAERENNSRGFPKIL-IDGPYGAPAQD--YKKYDVVLLVGLGIGATPMISIVKDIINNMKSED 756 (912)
Q Consensus 680 ~~~~~~~~~~~g~sg~~~~~~~~~~~~~~~v~-IdGPYG~~~~~--~~~y~~vllVagGiGITP~lsiL~~l~~~~~~~~ 756 (912)
+ ..+..+. |.||+|.+... ....+.+|||||||||||++++++.+...
T Consensus 725 l------------------------k~Gd~l~~I~GPlG~~f~~~~~~~~~~vllIAGGiGIAPl~sl~r~l~~~----- 775 (944)
T PRK12779 725 M------------------------AIGDAFSGIAGPLGRASELHRYEGNQTVVFCAGGVGLPPVYPIMRAHLRL----- 775 (944)
T ss_pred C------------------------CCcCEEeeeecCCCCCcCCccccCCCcEEEEEccEeHHHHHHHHHHHHHC-----
Confidence 2 2577885 99999997521 12235899999999999999999988643
Q ss_pred ccccccccccCCCCCCCCCcceEEEEEEeCCCCcHHHHHHH---HHHHHhhcCCCcEEEEEeeccccCCCChhHHHHHHH
Q 002525 757 NNLESGLTVNNNNKNSSFNTRKAYFYWVTREQGSFEWFKGI---MNEVAEMDEKRVIELHNYCTSVYEEGDARSALIAML 833 (912)
Q Consensus 757 ~~~~~~~~~~~~~~~~~~~~~rv~l~W~~R~~~~~~wf~~~---L~el~~~~~~~~i~i~iy~T~~~~~~d~~s~l~~~~ 833 (912)
..+++|+|.+|+.+++ .+.+. ++++++..+. .++++ +|... +.
T Consensus 776 -------------------g~~V~li~G~Rs~edl-~~~del~~L~~la~~~~~-~~~v~--~ttdd--gs--------- 821 (944)
T PRK12779 776 -------------------GNHVTLISGFRAKEFL-FWTGDDERVGKLKAEFGD-QLDVI--YTTND--GS--------- 821 (944)
T ss_pred -------------------CCCEEEEEEeCCHHHh-hhHHHHHHHHHHHHHcCC-CeEEE--EEecC--CC---------
Confidence 2469999999999876 34444 4445443322 34443 33210 00
Q ss_pred hhhccccCCcccccCCccccccCCCCHHHHHHHHHhhCC---C-CeEEEEEeCChHHHHHHHHHHHhhc
Q 002525 834 QSLHHAKNGVDVVSGTRVKSHFAKPNWRQVYKRIALHHP---D-SRIGVFYCGAPALTKELRQLASDFS 898 (912)
Q Consensus 834 q~l~~~~~~~d~~sg~~v~~~~gRPd~~~vl~~~~~~~~---~-~~v~V~~CGP~~m~~~vr~~~~~~~ 898 (912)
.| ..|+.+ +.+.++..... + ....||+|||++|++.+.+.+.+..
T Consensus 822 -------------~G-----~~G~Vt--~~l~~ll~~~~~~~~~~~~~Vy~CGP~~Mmkav~~~l~~~G 870 (944)
T PRK12779 822 -------------FG-----VKGFVT--GPLEEMLKANQQGKGRTIAEVIAIGPPLMMRAVSDLTKPYG 870 (944)
T ss_pred -------------CC-----CccccC--hHHHHHHHhcccccccCCcEEEEECCHHHHHHHHHHHHHcC
Confidence 01 113322 23333322221 1 1246999999999999999887754
No 67
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.80 E-value=3.9e-19 Score=173.85 Aligned_cols=143 Identities=20% Similarity=0.353 Sum_probs=123.1
Q ss_pred ccCCCCCChHHHHHHHHHHcCCCCCceeehhhhcccc---cCCCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHh
Q 002525 162 KTGAAGNGWPAVEKRYNELAITTSDGLLHCSMFGECI---GMNKESKEFAGELFRGLCRKHNISGDSINKAQLKEFWDQI 238 (912)
Q Consensus 162 ~~~~~~~~~~~l~~~F~~ld~~d~dG~I~~~ef~~~l---g~~~~~~~~~~~lf~~l~d~d~~~~G~Id~~EF~~~~~~~ 238 (912)
+++.+ +++++++.|..+|. |+||.|++++|..++ |.++ ++.++.+||..++. ++ |.|||.||+.++...
T Consensus 13 ~~t~~--qi~~lkeaF~l~D~-d~~G~I~~~el~~ilr~lg~~~-s~~ei~~l~~~~d~--~~--~~idf~~Fl~~ms~~ 84 (160)
T COG5126 13 QLTEE--QIQELKEAFQLFDR-DSDGLIDRNELGKILRSLGFNP-SEAEINKLFEEIDA--GN--ETVDFPEFLTVMSVK 84 (160)
T ss_pred cCCHH--HHHHHHHHHHHhCc-CCCCCCcHHHHHHHHHHcCCCC-cHHHHHHHHHhccC--CC--CccCHHHHHHHHHHH
Confidence 34445 89999999999998 999999999999887 8885 88889999996544 33 999999999999875
Q ss_pred c-CCChHHHHHHHHhHhCCCCCCcccHHHHHHHHHhhhccCcccchHHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHh
Q 002525 239 S-DESFDSRLQTFFDMVDTDADGRITEEEVKEIISLSASANKLSNIQKQAEEYAAMIMEELDPDNAGYIMIHNLETLLLQ 317 (912)
Q Consensus 239 ~-~~~~ee~L~~aF~~fDkd~dG~It~eEl~~il~~~~~~~~l~~~~~~~ee~~~~i~~e~D~d~dG~Is~~EF~~~l~~ 317 (912)
. ....+++|+.||+.||+|+||+|+.+||+.+++..+ .+++ ++.++.+++++|.|+||+|+|+||.+++..
T Consensus 85 ~~~~~~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lg--e~~~------deev~~ll~~~d~d~dG~i~~~eF~~~~~~ 156 (160)
T COG5126 85 LKRGDKEEELREAFKLFDKDHDGYISIGELRRVLKSLG--ERLS------DEEVEKLLKEYDEDGDGEIDYEEFKKLIKD 156 (160)
T ss_pred hccCCcHHHHHHHHHHhCCCCCceecHHHHHHHHHhhc--ccCC------HHHHHHHHHhcCCCCCceEeHHHHHHHHhc
Confidence 4 667799999999999999999999999999998432 2233 678888999999999999999999999987
Q ss_pred CCC
Q 002525 318 APN 320 (912)
Q Consensus 318 ~p~ 320 (912)
.|+
T Consensus 157 ~~~ 159 (160)
T COG5126 157 SPT 159 (160)
T ss_pred cCC
Confidence 763
No 68
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=99.80 E-value=2.1e-18 Score=213.06 Aligned_cols=200 Identities=21% Similarity=0.288 Sum_probs=146.5
Q ss_pred eEEEEEEEecCCEEEEEEecCCC-ccccCccEEEEEeCCCCCCcccceeeeecCC-CCeEEEEEEecCcchHHHHHHHhh
Q 002525 606 VKILKVAVYPGNVLALHMSKPQG-FKYKSGQYMFVNCAAVSPFEWHPFSITSSPG-DDYLSVHIRTLGDWTRQLKTVFSE 683 (912)
Q Consensus 606 ~~i~~v~~~~~~v~~l~~~~p~~-~~~~pGQyv~l~~p~~s~~e~HPFTIaS~p~-~~~l~l~Ir~~G~~T~~L~~~~~~ 683 (912)
++|+++..+++++..|++..|.. ..++||||+.|+++.. .++|||||+|.|. ++.++|+||..|..|..|.++-
T Consensus 2 ~~I~~~~~~t~~v~~l~l~~p~~~~~~~pGQFv~l~~~~~--~~~rp~Si~~~~~~~g~i~~~vk~vG~~T~~L~~l~-- 77 (752)
T PRK12778 2 NKIVEKEIFSEKVFLLEIEAPLIAKSRKPGQFVIVRVGEK--GERIPLTIADADPEKGTITLVIQEVGLSTTKLCELN-- 77 (752)
T ss_pred CEEEEEEEEcCCEEEEEEeCCchhccCCCCeeEEEEeCCC--CCeeEEEeeeeCCCCCEEEEEEEEcCchHHHHhcCC--
Confidence 46788889999999999987753 5799999999999754 3579999999875 5789999999999999997522
Q ss_pred ccCCCCCCCCccchhhhccCCCCCCeE-EEeCCCCCCCCCCCCCCEEEEEEcCcchhhHHHHHHHHHHhccccCcccccc
Q 002525 684 VCQPAPAGKSGLLRAERENNSRGFPKI-LIDGPYGAPAQDYKKYDVVLLVGLGIGATPMISIVKDIINNMKSEDNNLESG 762 (912)
Q Consensus 684 ~~~~~~~g~sg~~~~~~~~~~~~~~~v-~IdGPYG~~~~~~~~y~~vllVagGiGITP~lsiL~~l~~~~~~~~~~~~~~ 762 (912)
.+..+ .|.||||.+... ...+.++|||||+||||++++++++..+
T Consensus 78 ----------------------~Gd~v~~v~GP~G~~~~~-~~~~~~llvaGG~GiaPl~~l~~~l~~~----------- 123 (752)
T PRK12778 78 ----------------------EGDYITDVVGPLGNPSEI-ENYGTVVCAGGGVGVAPMLPIVKALKAA----------- 123 (752)
T ss_pred ----------------------CCCEeCeEeCCCCCCccC-CCCCeEEEEECCEeHHHHHHHHHHHHHC-----------
Confidence 57788 799999998643 3457899999999999999999998753
Q ss_pred ccccCCCCCCCCCcceEEEEEEeCCCCcHHHHHHHHHHHHhhcCCCcEEEEEeeccccCCCChhHHHHHHHhhhccccCC
Q 002525 763 LTVNNNNKNSSFNTRKAYFYWVTREQGSFEWFKGIMNEVAEMDEKRVIELHNYCTSVYEEGDARSALIAMLQSLHHAKNG 842 (912)
Q Consensus 763 ~~~~~~~~~~~~~~~rv~l~W~~R~~~~~~wf~~~L~el~~~~~~~~i~i~iy~T~~~~~~d~~s~l~~~~q~l~~~~~~ 842 (912)
..+++++|..|+.+++ .|.++|.+++.. + + +.|.. +.
T Consensus 124 -------------~~~v~l~~g~r~~~~l-~~~~el~~~~~~-----~--~-~~t~d---g~------------------ 160 (752)
T PRK12778 124 -------------GNRVITILGGRSKELI-ILEDEMRESSDE-----V--I-IMTDD---GS------------------ 160 (752)
T ss_pred -------------CCeEEEEeccCCHHHh-hhHHHHHhhcCe-----E--E-EEECC---CC------------------
Confidence 2479999999999987 466666655421 1 1 12210 00
Q ss_pred cccccCCccccccCCCCHHHHHHHHHhhCCCCeEEEEEeCChHHHHHHHHHHHhhc
Q 002525 843 VDVVSGTRVKSHFAKPNWRQVYKRIALHHPDSRIGVFYCGAPALTKELRQLASDFS 898 (912)
Q Consensus 843 ~d~~sg~~v~~~~gRPd~~~vl~~~~~~~~~~~v~V~~CGP~~m~~~vr~~~~~~~ 898 (912)
.| +.|+ +.+++.+..... .....||+|||++|++.+.+.+.+..
T Consensus 161 ----~g-----~~G~--v~~~l~~~~~~~-~~~~~vy~CGP~~M~~~v~~~l~~~g 204 (752)
T PRK12778 161 ----YG-----RKGL--VTDGLEEVIKRE-TKVDKVFAIGPAIMMKFVCLLTKKYG 204 (752)
T ss_pred ----CC-----Cccc--HHHHHHHHhhcC-CCCCEEEEECCHHHHHHHHHHHHHcC
Confidence 00 0111 223444433221 11236999999999999999887653
No 69
>cd06193 siderophore_interacting Siderophore interacting proteins share the domain structure of the ferredoxin reductase like family. Siderophores are produced in various bacteria (and some plants) to extract iron from hosts. Binding constants are high, so iron can be pilfered from transferrin and lactoferrin for bacterial uptake, contributing to pathogen virulence. Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hy
Probab=99.80 E-value=3.6e-18 Score=182.16 Aligned_cols=134 Identities=11% Similarity=0.073 Sum_probs=108.1
Q ss_pred EEEEEEecCCEEEEEEecCCC---ccccCccEEEEEeCCCC-------------------CCcccceeeeecC-CCCeEE
Q 002525 608 ILKVAVYPGNVLALHMSKPQG---FKYKSGQYMFVNCAAVS-------------------PFEWHPFSITSSP-GDDYLS 664 (912)
Q Consensus 608 i~~v~~~~~~v~~l~~~~p~~---~~~~pGQyv~l~~p~~s-------------------~~e~HPFTIaS~p-~~~~l~ 664 (912)
|++++.+++++.+|+|+.|.. ..|.||||+.|.+|..+ ...+++|||++.| +++++.
T Consensus 1 V~~~~~~s~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~YSi~~~~~~~~~l~ 80 (235)
T cd06193 1 VVRVERLTPHMRRITLGGPDLAGFPSDGPDQHVKLLFPDPGQAPPVLPVLGRRRWPPEEPRPVMRTYTVRRFDPEAGELD 80 (235)
T ss_pred CceeEecCCCEEEEEEecCccccCCCCCCCceEEEEecCCCCCCCCCccccccccCCcccCCcCcccceeEEcCCCCEEE
Confidence 356788899999999998764 57899999999998643 4678999999986 568899
Q ss_pred EEEEec---CcchHHHHHHHhhccCCCCCCCCccchhhhccCCCCCCeEEEeCCCCCCCCCCCCCCEEEEEEcCcchhhH
Q 002525 665 VHIRTL---GDWTRQLKTVFSEVCQPAPAGKSGLLRAERENNSRGFPKILIDGPYGAPAQDYKKYDVVLLVGLGIGATPM 741 (912)
Q Consensus 665 l~Ir~~---G~~T~~L~~~~~~~~~~~~~g~sg~~~~~~~~~~~~~~~v~IdGPYG~~~~~~~~y~~vllVagGiGITP~ 741 (912)
|.|+.. |..|+.|.+ + ..+..+.|.||+|.+... ...+.+||||||+||||+
T Consensus 81 ~~v~~~~~~G~~s~~l~~-l-----------------------~~Gd~v~v~gP~G~~~~~-~~~~~~vlia~GtGi~p~ 135 (235)
T cd06193 81 IDFVLHGDEGPASRWAAS-A-----------------------QPGDTLGIAGPGGSFLPP-PDADWYLLAGDETALPAI 135 (235)
T ss_pred EEEEeCCCCCchHHHHhh-C-----------------------CCCCEEEEECCCCCCCCC-CCcceEEEEeccchHHHH
Confidence 999877 446777643 2 257899999999998653 245789999999999999
Q ss_pred HHHHHHHHHhccccCccccccccccCCCCCCCCCcceEEEEEEeCCCCcH
Q 002525 742 ISIVKDIINNMKSEDNNLESGLTVNNNNKNSSFNTRKAYFYWVTREQGSF 791 (912)
Q Consensus 742 lsiL~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~l~W~~R~~~~~ 791 (912)
++|++++.. ..++++++.+|+.+++
T Consensus 136 ~~il~~~~~-------------------------~~~~~~~~~~~~~~d~ 160 (235)
T cd06193 136 AAILEELPA-------------------------DARGTALIEVPDAADE 160 (235)
T ss_pred HHHHHhCCC-------------------------CCeEEEEEEECCHHHc
Confidence 999997632 1579999999998543
No 70
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=99.78 E-value=9.6e-18 Score=214.74 Aligned_cols=223 Identities=12% Similarity=0.163 Sum_probs=158.3
Q ss_pred cccceEEEEEE---EecCCEEEEEEecCCC---ccccCccEEEEEeCCCCCCcccceeeeecCCC-CeEEEEEEec-Ccc
Q 002525 602 SIEPVKILKVA---VYPGNVLALHMSKPQG---FKYKSGQYMFVNCAAVSPFEWHPFSITSSPGD-DYLSVHIRTL-GDW 673 (912)
Q Consensus 602 ~~~~~~i~~v~---~~~~~v~~l~~~~p~~---~~~~pGQyv~l~~p~~s~~e~HPFTIaS~p~~-~~l~l~Ir~~-G~~ 673 (912)
.|.++++.+++ .+++++..++|..|.. +.|+|||||.|+++..+.-.+++||++|.|++ +.+.|+||.. |..
T Consensus 913 ~w~~~~l~~~~~~~~~~~~~~~~~f~lp~~~~~~~~~pGQfv~l~~~~~g~~~~R~YS~~S~p~~~~~i~l~Vr~~~G~~ 992 (1167)
T PTZ00306 913 KWTTVVVREVREGGQFGTGSRVLRFNLPGALQRSGLTLGQFIAIRGDWDGQQLIGYYSPITLPDDLGVISILARGDKGTL 992 (1167)
T ss_pred ceEEEEEEEEeccccccCCeEEEEEECCCcccccCCCCCeEEEEEeeeCCeEEEEEeccCCCCCCCCeEEEEEEcCCChh
Confidence 46677888876 4578988888887753 46999999999986433345799999999964 6799999974 778
Q ss_pred hHHHHHHHhhccCCCCCCCCccchhhhccCCCCCCeEEEeCCCCCCC----------CCCCCCCEEEEEEcCcchhhHHH
Q 002525 674 TRQLKTVFSEVCQPAPAGKSGLLRAERENNSRGFPKILIDGPYGAPA----------QDYKKYDVVLLVGLGIGATPMIS 743 (912)
Q Consensus 674 T~~L~~~~~~~~~~~~~g~sg~~~~~~~~~~~~~~~v~IdGPYG~~~----------~~~~~y~~vllVagGiGITP~ls 743 (912)
|..|.+ + ..+..|.|.||+|-.. .+....+.+|||||||||||++|
T Consensus 993 S~~L~~-l-----------------------~~Gd~v~v~gp~G~~~~~~p~~~~f~~~~~~~~~ivlIAGGtGItP~~s 1048 (1167)
T PTZ00306 993 KEWISA-L-----------------------RPGDSVEMKACGGLRIERRPADKQFVFRGHVIRKLALIAGGTGVAPMLQ 1048 (1167)
T ss_pred HHHHhh-C-----------------------CCCCEEEEeCCcCccccccCccceeeeccCCCceEEEEECCccHhHHHH
Confidence 888853 2 2578999999998311 11123468999999999999999
Q ss_pred HHHHHHHhccccCccccccccccCCCCCCCCCcceEEEEEEeCCCCcHHHHHHHHHHHHhhcCCCcEEEEEeeccccCCC
Q 002525 744 IVKDIINNMKSEDNNLESGLTVNNNNKNSSFNTRKAYFYWVTREQGSFEWFKGIMNEVAEMDEKRVIELHNYCTSVYEEG 823 (912)
Q Consensus 744 iL~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~l~W~~R~~~~~~wf~~~L~el~~~~~~~~i~i~iy~T~~~~~~ 823 (912)
|+++++.+.... ..++++|+|++|+.+++ +|+++|.++++..+ ..++++..+++..+
T Consensus 1049 ml~~~l~~~~~~-------------------~~~~i~Llyg~r~~~dl-~~~~eL~~l~~~~~-~~f~~~~~ls~~~~-- 1105 (1167)
T PTZ00306 1049 IIRAALKKPYVD-------------------SIESIRLIYAAEDVSEL-TYRELLESYRKENP-GKFKCHFVLNNPPE-- 1105 (1167)
T ss_pred HHHHHHhCcccC-------------------CCceEEEEEEeCCHHHh-hHHHHHHHHHHHCC-CCEEEEEEECCCCc--
Confidence 999987642100 14689999999999998 78899998876543 25777766654211
Q ss_pred ChhHHHHHHHhhhccccCCcccccCCccccccCCCCHHHHHHHHHhhCCCCeEEEEEeCChHHHHHHHHHHHhhcc
Q 002525 824 DARSALIAMLQSLHHAKNGVDVVSGTRVKSHFAKPNWRQVYKRIALHHPDSRIGVFYCGAPALTKELRQLASDFSH 899 (912)
Q Consensus 824 d~~s~l~~~~q~l~~~~~~~d~~sg~~v~~~~gRPd~~~vl~~~~~~~~~~~v~V~~CGP~~m~~~vr~~~~~~~~ 899 (912)
+. .+ ..||.+- .++++.... +.....||+|||++|++.+++.+.+..-
T Consensus 1106 ~w---------------------~~-----~~G~i~~-~~l~~~l~~-~~~~~~vyiCGP~~mv~~v~~~L~~~G~ 1153 (1167)
T PTZ00306 1106 GW---------------------TD-----GVGFVDR-ALLQSALQP-PSKDLLVAICGPPVMQRAVKADLLALGY 1153 (1167)
T ss_pred cc---------------------CC-----CCCCCCH-HHHHHhcCC-CCCCeEEEEeCCHHHHHHHHHHHHHcCC
Confidence 00 00 1244332 234333221 2234679999999999999999887644
No 71
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=99.74 E-value=9.3e-17 Score=202.05 Aligned_cols=199 Identities=15% Similarity=0.252 Sum_probs=144.7
Q ss_pred eEEEEEEEecCCEEEEEEecCC-CccccCccEEEEEeCCCCCCcccceeeeecCC-CCeEEEEEEecCcchHHHHHHHhh
Q 002525 606 VKILKVAVYPGNVLALHMSKPQ-GFKYKSGQYMFVNCAAVSPFEWHPFSITSSPG-DDYLSVHIRTLGDWTRQLKTVFSE 683 (912)
Q Consensus 606 ~~i~~v~~~~~~v~~l~~~~p~-~~~~~pGQyv~l~~p~~s~~e~HPFTIaS~p~-~~~l~l~Ir~~G~~T~~L~~~~~~ 683 (912)
.+|++...+.+++..+++..|. ...++|||||.|+++.. -+.+||||++.+. ++.++|+||..|..|+.|...+
T Consensus 2 ~~I~~~~~l~~~~~~l~l~ap~~a~~~~PGQFV~l~~~~~--~errplSIa~~~~~~g~i~l~vk~vG~~T~~L~~~l-- 77 (1006)
T PRK12775 2 YSIVRREAFSDTTFLWEVEAPDVAASAEPGHFVMLRLYEG--AERIPLTVADFDRKKGTITMVVQALGKTTREMMTKF-- 77 (1006)
T ss_pred cEEEEEEEecCCEEEEEEecCCcccCCCCCeeEEEEeCCC--CeeEEEEecCcCCCCCEEEEEEEecCcHHHHHHhcC--
Confidence 3678888899999999998886 45799999999999753 3579999998764 5789999999999999986543
Q ss_pred ccCCCCCCCCccchhhhccCCCCCCeE-EEeCCCCCCCCCCCCCCEEEEEEcCcchhhHHHHHHHHHHhccccCcccccc
Q 002525 684 VCQPAPAGKSGLLRAERENNSRGFPKI-LIDGPYGAPAQDYKKYDVVLLVGLGIGATPMISIVKDIINNMKSEDNNLESG 762 (912)
Q Consensus 684 ~~~~~~~g~sg~~~~~~~~~~~~~~~v-~IdGPYG~~~~~~~~y~~vllVagGiGITP~lsiL~~l~~~~~~~~~~~~~~ 762 (912)
..+..+ .+.||+|.+.. ...++.+|||||||||||++|+++.+...
T Consensus 78 ---------------------k~Gd~l~~v~GPlG~~~~-~~~~~~vllVaGGiGIAPl~s~~r~l~~~----------- 124 (1006)
T PRK12775 78 ---------------------KAGDTFEDFVGPLGLPQH-IDKAGHVVLVGGGLGVAPVYPQLRAFKEA----------- 124 (1006)
T ss_pred ---------------------CCCCEEeeeecCCCCCCC-CCCCCeEEEEEEhHHHHHHHHHHHHHHhC-----------
Confidence 146777 69999998753 33467899999999999999999988543
Q ss_pred ccccCCCCCCCCCcceEEEEEEeCCCCcHHHHHHHHHHHHhhcCCCcEEEEEeeccccCCCChhHHHHHHHhhhccccCC
Q 002525 763 LTVNNNNKNSSFNTRKAYFYWVTREQGSFEWFKGIMNEVAEMDEKRVIELHNYCTSVYEEGDARSALIAMLQSLHHAKNG 842 (912)
Q Consensus 763 ~~~~~~~~~~~~~~~rv~l~W~~R~~~~~~wf~~~L~el~~~~~~~~i~i~iy~T~~~~~~d~~s~l~~~~q~l~~~~~~ 842 (912)
..+++++|..|+.+++ .+.++|.++.. .+ +++.. |.
T Consensus 125 -------------g~~v~li~g~R~~~~l-~~~del~~~~~-----~~----~v~td----dg----------------- 160 (1006)
T PRK12775 125 -------------GARTTGIIGFRNKDLV-FWEDKFGKYCD-----DL----IVCTD----DG----------------- 160 (1006)
T ss_pred -------------CCcEEEEEeCCChHHc-ccHHHHHhhcC-----cE----EEEEC----CC-----------------
Confidence 2469999999999876 45666654432 12 22211 10
Q ss_pred cccccCCccccccCC-CCHHHHHHHHHhhCCCCeEEEEEeCChHHHHHHHHHHHhhc
Q 002525 843 VDVVSGTRVKSHFAK-PNWRQVYKRIALHHPDSRIGVFYCGAPALTKELRQLASDFS 898 (912)
Q Consensus 843 ~d~~sg~~v~~~~gR-Pd~~~vl~~~~~~~~~~~v~V~~CGP~~m~~~vr~~~~~~~ 898 (912)
.+|+ ..+.+.+.++..... ...||+|||+.|++.+.+.+.++.
T Consensus 161 -----------s~G~~G~vt~~l~~~l~~~~--~d~vy~CGP~~Mm~av~~~~~~~g 204 (1006)
T PRK12775 161 -----------SYGKPGFVTAALKEVCEKDK--PDLVVAIGPLPMMNACVETTRPFG 204 (1006)
T ss_pred -----------CCCCCCChHHHHHHHhccCC--CCEEEEECCHHHHHHHHHHHHHCC
Confidence 0111 122344544432211 125999999999999999887654
No 72
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=99.74 E-value=1.7e-17 Score=167.95 Aligned_cols=145 Identities=20% Similarity=0.297 Sum_probs=123.8
Q ss_pred ChHHHHHHHHHHcCCC-CCceeehhhhcccccCCCCCHHHHHHHHHHHHhhCCCCCCc-ccHHHHHHHHHHhcCCC-hHH
Q 002525 169 GWPAVEKRYNELAITT-SDGLLHCSMFGECIGMNKESKEFAGELFRGLCRKHNISGDS-INKAQLKEFWDQISDES-FDS 245 (912)
Q Consensus 169 ~~~~l~~~F~~ld~~d-~dG~I~~~ef~~~lg~~~~~~~~~~~lf~~l~d~d~~~~G~-Id~~EF~~~~~~~~~~~-~ee 245 (912)
||..|.++|.++|. + ++|.|+.+||..+.... .+.+..++++. .+.+++ |. |+|+||+..+..+.... .++
T Consensus 31 EI~~L~~rF~kl~~-~~~~g~lt~eef~~i~~~~--~Np~~~rI~~~-f~~~~~--~~~v~F~~Fv~~ls~f~~~~~~~~ 104 (187)
T KOG0034|consen 31 EIERLYERFKKLDR-NNGDGYLTKEEFLSIPELA--LNPLADRIIDR-FDTDGN--GDPVDFEEFVRLLSVFSPKASKRE 104 (187)
T ss_pred HHHHHHHHHHHhcc-ccccCccCHHHHHHHHHHh--cCcHHHHHHHH-HhccCC--CCccCHHHHHHHHhhhcCCccHHH
Confidence 89999999999998 6 89999999999998554 55678999995 455454 45 99999999999976554 456
Q ss_pred HHHHHHhHhCCCCCCcccHHHHHHHHHhhhccCcccchHHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhCCC
Q 002525 246 RLQTFFDMVDTDADGRITEEEVKEIISLSASANKLSNIQKQAEEYAAMIMEELDPDNAGYIMIHNLETLLLQAPN 320 (912)
Q Consensus 246 ~L~~aF~~fDkd~dG~It~eEl~~il~~~~~~~~l~~~~~~~ee~~~~i~~e~D~d~dG~Is~~EF~~~l~~~p~ 320 (912)
|++.||++||.|+||+|+++||..++......+... .+++.++.++.+|.|+|.|+||.|+++||...+.+.|.
T Consensus 105 Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~-~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v~~~P~ 178 (187)
T KOG0034|consen 105 KLRFAFRVYDLDGDGFISREELKQILRMMVGENDDM-SDEQLEDIVDKTFEEADTDGDGKISFEEFCKVVEKQPD 178 (187)
T ss_pred HHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcc-hHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHcCcc
Confidence 999999999999999999999999998544433222 56888999999999999999999999999999999984
No 73
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.70 E-value=1.2e-16 Score=158.61 Aligned_cols=136 Identities=18% Similarity=0.348 Sum_probs=113.6
Q ss_pred ChHHHHHHHHHHcCCCCCceeehhhhcccc---cCCCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhcCCC---
Q 002525 169 GWPAVEKRYNELAITTSDGLLHCSMFGECI---GMNKESKEFAGELFRGLCRKHNISGDSINKAQLKEFWDQISDES--- 242 (912)
Q Consensus 169 ~~~~l~~~F~~ld~~d~dG~I~~~ef~~~l---g~~~~~~~~~~~lf~~l~d~d~~~~G~Id~~EF~~~~~~~~~~~--- 242 (912)
++.++++.|+.+|. |++|.|+.+||..++ |..+ ++..+..+++. .|.+++ |.|+++||+..+.......
T Consensus 6 ~~~el~~~F~~fD~-d~~G~i~~~el~~~lr~lg~~~-t~~el~~~~~~-~D~dg~--g~I~~~eF~~l~~~~~~~~~~~ 80 (151)
T KOG0027|consen 6 QILELKEAFQLFDK-DGDGKISVEELGAVLRSLGQNP-TEEELRDLIKE-IDLDGD--GTIDFEEFLDLMEKLGEEKTDE 80 (151)
T ss_pred HHHHHHHHHHHHCC-CCCCcccHHHHHHHHHHcCCCC-CHHHHHHHHHH-hCCCCC--CeEcHHHHHHHHHhhhcccccc
Confidence 57889999999999 999999999999987 7775 77777888774 344444 9999999999998753322
Q ss_pred --hHHHHHHHHhHhCCCCCCcccHHHHHHHHHhhhccCcccchHHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHh
Q 002525 243 --FDSRLQTFFDMVDTDADGRITEEEVKEIISLSASANKLSNIQKQAEEYAAMIMEELDPDNAGYIMIHNLETLLLQ 317 (912)
Q Consensus 243 --~ee~L~~aF~~fDkd~dG~It~eEl~~il~~~~~~~~l~~~~~~~ee~~~~i~~e~D~d~dG~Is~~EF~~~l~~ 317 (912)
..+.++.+|+.||+|+||+||.+||+.+|...+.. ++ ++.++.+++++|.|+||.|+|+||..||..
T Consensus 81 ~~~~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg~~--~~------~~e~~~mi~~~d~d~dg~i~f~ef~~~m~~ 149 (151)
T KOG0027|consen 81 EASSEELKEAFRVFDKDGDGFISASELKKVLTSLGEK--LT------DEECKEMIREVDVDGDGKVNFEEFVKMMSG 149 (151)
T ss_pred cccHHHHHHHHHHHccCCCCcCcHHHHHHHHHHhCCc--CC------HHHHHHHHHhcCCCCCCeEeHHHHHHHHhc
Confidence 35699999999999999999999999999754432 22 567788999999999999999999999975
No 74
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=99.70 E-value=3.7e-17 Score=143.93 Aligned_cols=100 Identities=67% Similarity=1.108 Sum_probs=76.6
Q ss_pred cccccchHHHHHhhhhhhhhhccCCCCCChHHHHHHHHHHcCCCCCceeehhhhcccccCCCCCHHHHHHHHHHHHhhCC
Q 002525 141 RFDRTKSAAAHALKGLKFITTKTGAAGNGWPAVEKRYNELAITTSDGLLHCSMFGECIGMNKESKEFAGELFRGLCRKHN 220 (912)
Q Consensus 141 ~~~r~~s~~~~al~~L~~i~~~~~~~~~~~~~l~~~F~~ld~~d~dG~I~~~ef~~~lg~~~~~~~~~~~lf~~l~d~d~ 220 (912)
|++|++|+|++||+||+||+++.+.. ++|..|+++|++|.. ||.|++++|.+|+||+ ++++|+.+||++|.++++
T Consensus 1 rldRt~S~A~~ALkGLrFIskt~~~~-~~W~~VE~RFd~La~---dG~L~rs~Fg~CIGM~-dSkeFA~eLFdALaRrr~ 75 (100)
T PF08414_consen 1 RLDRTKSGAQRALKGLRFISKTTGGA-DGWKEVEKRFDKLAK---DGLLPRSDFGECIGMK-DSKEFAGELFDALARRRG 75 (100)
T ss_dssp -----HHHHHHHHHHHHHHHHHH------HHHHHHHHHHH-B---TTBEEGGGHHHHHT---S-HHHHHHHHHHHHHHTT
T ss_pred CCCcchhHHHHHHhcccceecCCCCc-cCHHHHHHHHHHhCc---CCcccHHHHHHhcCCc-ccHHHHHHHHHHHHHhcC
Confidence 57899999999999999999988663 389999999999994 9999999999999999 799999999999999999
Q ss_pred CCCCcccHHHHHHHHHHhcCCChHH
Q 002525 221 ISGDSINKAQLKEFWDQISDESFDS 245 (912)
Q Consensus 221 ~~~G~Id~~EF~~~~~~~~~~~~ee 245 (912)
...+.|+.+|+.++|.++.++++|.
T Consensus 76 i~~~~I~k~eL~efW~qisD~sFDs 100 (100)
T PF08414_consen 76 IKGDSITKDELKEFWEQISDQSFDS 100 (100)
T ss_dssp --SSEE-HHHHHHHHHHHH---HHH
T ss_pred CccCCcCHHHHHHHHHHhhccCCCC
Confidence 8889999999999999999887763
No 75
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.63 E-value=1.2e-15 Score=154.54 Aligned_cols=146 Identities=19% Similarity=0.278 Sum_probs=118.4
Q ss_pred ChHHHHHHHHHHcCCCCCceeehhhhcccccC---CCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhcCCChHH
Q 002525 169 GWPAVEKRYNELAITTSDGLLHCSMFGECIGM---NKESKEFAGELFRGLCRKHNISGDSINKAQLKEFWDQISDESFDS 245 (912)
Q Consensus 169 ~~~~l~~~F~~ld~~d~dG~I~~~ef~~~lg~---~~~~~~~~~~lf~~l~d~d~~~~G~Id~~EF~~~~~~~~~~~~ee 245 (912)
++...++-|.. + ..+|.++.++|++.+.. ..+++.+++.+|.. +|.+++ |.|+|+||+.+++....+..++
T Consensus 27 ei~~~Yr~Fk~-~--cP~G~~~~~~F~~i~~~~fp~gd~~~y~~~vF~~-fD~~~d--g~i~F~Efi~als~~~rGt~ee 100 (193)
T KOG0044|consen 27 EIQQWYRGFKN-E--CPSGRLTLEEFREIYASFFPDGDASKYAELVFRT-FDKNKD--GTIDFLEFICALSLTSRGTLEE 100 (193)
T ss_pred HHHHHHHHhcc-c--CCCCccCHHHHHHHHHHHCCCCCHHHHHHHHHHH-hcccCC--CCcCHHHHHHHHHHHcCCcHHH
Confidence 56666666776 2 36999999999998722 22467899999995 455555 9999999999999999999999
Q ss_pred HHHHHHhHhCCCCCCcccHHHHHHHHHhhhccC---cccchHHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhCCC
Q 002525 246 RLQTFFDMVDTDADGRITEEEVKEIISLSASAN---KLSNIQKQAEEYAAMIMEELDPDNAGYIMIHNLETLLLQAPN 320 (912)
Q Consensus 246 ~L~~aF~~fDkd~dG~It~eEl~~il~~~~~~~---~l~~~~~~~ee~~~~i~~e~D~d~dG~Is~~EF~~~l~~~p~ 320 (912)
+++.+|++||.|+||+||++|+-+++....... ..+..++..++.++.+|+++|.|+||.||++||....+..|+
T Consensus 101 kl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n~Dg~lT~eef~~~~~~d~~ 178 (193)
T KOG0044|consen 101 KLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMDKNKDGKLTLEEFIEGCKADPS 178 (193)
T ss_pred HhhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHcCCCCCCcccHHHHHHHhhhCHH
Confidence 999999999999999999999999997422111 111223445788999999999999999999999999998874
No 76
>PTZ00183 centrin; Provisional
Probab=99.59 E-value=1.1e-14 Score=144.82 Aligned_cols=138 Identities=12% Similarity=0.245 Sum_probs=114.5
Q ss_pred ChHHHHHHHHHHcCCCCCceeehhhhcccc---cCCCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHh-cCCChH
Q 002525 169 GWPAVEKRYNELAITTSDGLLHCSMFGECI---GMNKESKEFAGELFRGLCRKHNISGDSINKAQLKEFWDQI-SDESFD 244 (912)
Q Consensus 169 ~~~~l~~~F~~ld~~d~dG~I~~~ef~~~l---g~~~~~~~~~~~lf~~l~d~d~~~~G~Id~~EF~~~~~~~-~~~~~e 244 (912)
+++++++.|..+|. +++|.|+.+||..++ |... ....+..+|.. .+.+++ |.|+|+||+.++... .....+
T Consensus 15 ~~~~~~~~F~~~D~-~~~G~i~~~e~~~~l~~~g~~~-~~~~~~~l~~~-~d~~~~--g~i~~~eF~~~~~~~~~~~~~~ 89 (158)
T PTZ00183 15 QKKEIREAFDLFDT-DGSGTIDPKELKVAMRSLGFEP-KKEEIKQMIAD-VDKDGS--GKIDFEEFLDIMTKKLGERDPR 89 (158)
T ss_pred HHHHHHHHHHHhCC-CCCCcccHHHHHHHHHHhCCCC-CHHHHHHHHHH-hCCCCC--CcEeHHHHHHHHHHHhcCCCcH
Confidence 67889999999998 899999999998887 4542 56678888884 444454 999999999988764 344567
Q ss_pred HHHHHHHhHhCCCCCCcccHHHHHHHHHhhhccCcccchHHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhCC
Q 002525 245 SRLQTFFDMVDTDADGRITEEEVKEIISLSASANKLSNIQKQAEEYAAMIMEELDPDNAGYIMIHNLETLLLQAP 319 (912)
Q Consensus 245 e~L~~aF~~fDkd~dG~It~eEl~~il~~~~~~~~l~~~~~~~ee~~~~i~~e~D~d~dG~Is~~EF~~~l~~~p 319 (912)
+.++.+|+.+|+|++|+|+.+||..++.... ..++ ++.+..+|..+|.|++|.|+++||..+|...|
T Consensus 90 ~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~--~~l~------~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~ 156 (158)
T PTZ00183 90 EEILKAFRLFDDDKTGKISLKNLKRVAKELG--ETIT------DEELQEMIDEADRNGDGEISEEEFYRIMKKTN 156 (158)
T ss_pred HHHHHHHHHhCCCCCCcCcHHHHHHHHHHhC--CCCC------HHHHHHHHHHhCCCCCCcCcHHHHHHHHhccc
Confidence 8899999999999999999999999987432 2233 45677799999999999999999999999877
No 77
>cd06199 SiR Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain.
Probab=99.58 E-value=1.3e-14 Score=164.10 Aligned_cols=189 Identities=12% Similarity=0.164 Sum_probs=125.9
Q ss_pred CccccCccEEEEEeCCCCCCcccceeeeecCC--CCeEEEEEEec----------CcchHHHHHHHhhccCCCCCCCCcc
Q 002525 628 GFKYKSGQYMFVNCAAVSPFEWHPFSITSSPG--DDYLSVHIRTL----------GDWTRQLKTVFSEVCQPAPAGKSGL 695 (912)
Q Consensus 628 ~~~~~pGQyv~l~~p~~s~~e~HPFTIaS~p~--~~~l~l~Ir~~----------G~~T~~L~~~~~~~~~~~~~g~sg~ 695 (912)
..++.||||+.+..| ...++|||+|+|. ++.++++|+.. |-.|..|.++.
T Consensus 129 ~~~~~~gq~l~l~~~----~~~R~YSIaSsp~~~~~~i~l~v~~v~~~~~~~~~~G~~S~~L~~~~-------------- 190 (360)
T cd06199 129 PARLTAEELLDLLRP----LQPRLYSIASSPKAVPDEVHLTVAVVRYESHGRERKGVASTFLADRL-------------- 190 (360)
T ss_pred CCCCCHHHHHHhCcC----CCCcceeeccCcccCCCeEEEEEEEeeecCCCCccceehhHHHHhcC--------------
Confidence 357889999998744 3679999999996 36799998854 66777776643
Q ss_pred chhhhccCCCCCCeEEEeCCC-CCCCCCCCCCCEEEEEEcCcchhhHHHHHHHHHHhccccCccccccccccCCCCCCCC
Q 002525 696 LRAERENNSRGFPKILIDGPY-GAPAQDYKKYDVVLLVGLGIGATPMISIVKDIINNMKSEDNNLESGLTVNNNNKNSSF 774 (912)
Q Consensus 696 ~~~~~~~~~~~~~~v~IdGPY-G~~~~~~~~y~~vllVagGiGITP~lsiL~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 774 (912)
+.+..|.+.+|. |.+..+......+||||+|+||||++|++++.+...
T Consensus 191 ---------~~Gd~v~v~~~~~~~F~lp~~~~~piImIa~GtGIAP~~s~l~~~~~~~---------------------- 239 (360)
T cd06199 191 ---------KEGDTVPVFVQPNPHFRLPEDPDAPIIMVGPGTGIAPFRAFLQEREATG---------------------- 239 (360)
T ss_pred ---------CCCCEEEEEEecCCCcCCCCCCCCCEEEEecCcChHHHHHHHHHHHhcc----------------------
Confidence 146789998755 455433333468999999999999999999876531
Q ss_pred CcceEEEEEEeCCC-CcHHHHHHHHHHHHhhcCCCcEEEEEeeccccCCCChhHHHHHHHhhhccccCCcccccCCcccc
Q 002525 775 NTRKAYFYWVTREQ-GSFEWFKGIMNEVAEMDEKRVIELHNYCTSVYEEGDARSALIAMLQSLHHAKNGVDVVSGTRVKS 853 (912)
Q Consensus 775 ~~~rv~l~W~~R~~-~~~~wf~~~L~el~~~~~~~~i~i~iy~T~~~~~~d~~s~l~~~~q~l~~~~~~~d~~sg~~v~~ 853 (912)
...++.++|++|+. .++ .|.++|+++++.. ..++++...++..... . .+|.. +
T Consensus 240 ~~~~~~L~~G~R~~~~D~-~y~~el~~~~~~~--~~~~~~~a~Sr~~~~~-~------yVq~~--------------l-- 293 (360)
T cd06199 240 AKGKNWLFFGERHFATDF-LYQDELQQWLKDG--VLTRLDTAFSRDQAEK-V------YVQDR--------------M-- 293 (360)
T ss_pred CCCcEEEEEcCCCCccch-hHHHHHHHHHHcC--CCeEEEEEEccCCCCC-c------cHHHH--------------H--
Confidence 13568999999997 565 6889898887643 3456666566532100 0 00000 0
Q ss_pred ccCCCCHHHHHHHHHhhCCCCeEEEEEeCCh-HHHHHHHHHHHhhcc
Q 002525 854 HFAKPNWRQVYKRIALHHPDSRIGVFYCGAP-ALTKELRQLASDFSH 899 (912)
Q Consensus 854 ~~gRPd~~~vl~~~~~~~~~~~v~V~~CGP~-~m~~~vr~~~~~~~~ 899 (912)
+-+..++.. ... +...||+|||+ .|.++|++++.+...
T Consensus 294 ---~~~~~~~~~-~~~----~~~~vYvCG~~~~M~~~V~~~L~~i~~ 332 (360)
T cd06199 294 ---REQGAELWA-WLE----EGAHFYVCGDAKRMAKDVDAALLDIIA 332 (360)
T ss_pred ---HHhHHHHHH-HHh----CCCEEEEECCCccccHHHHHHHHHHHH
Confidence 000111111 111 12469999999 899999998877654
No 78
>cd06206 bifunctional_CYPOR These bifunctional proteins fuse N-terminal cytochrome p450 with a cytochrome p450 reductase (CYPOR). NADPH cytochrome p450 reductase serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a la
Probab=99.58 E-value=1.3e-14 Score=165.90 Aligned_cols=190 Identities=13% Similarity=0.176 Sum_probs=123.1
Q ss_pred ccCccEEEEEeCCCCCCcccceeeeecCC--CCeEEEEEEe------------cCcchHHHHHHHhhccCCCCCCCCccc
Q 002525 631 YKSGQYMFVNCAAVSPFEWHPFSITSSPG--DDYLSVHIRT------------LGDWTRQLKTVFSEVCQPAPAGKSGLL 696 (912)
Q Consensus 631 ~~pGQyv~l~~p~~s~~e~HPFTIaS~p~--~~~l~l~Ir~------------~G~~T~~L~~~~~~~~~~~~~g~sg~~ 696 (912)
...||++-+. |. .+.|||||+|+|. ++.+.+.|+. .|..|..|.++.
T Consensus 147 ~~~~~~l~~~-p~---l~~R~YSIaSsp~~~~~~i~l~v~v~~~~~~~~~~~~~G~~S~~L~~l~--------------- 207 (384)
T cd06206 147 LPLATFLAML-PP---MRPRQYSISSSPLVDPGHATLTVSVLDAPALSGQGRYRGVASSYLSSLR--------------- 207 (384)
T ss_pred CCHHHHHHhC-cc---cCCcceeeccCccCCCCeEEEEEEEEEeecCCCCceeeeehHHHHhhCC---------------
Confidence 3458888876 54 4789999999985 3555555554 466777775422
Q ss_pred hhhhccCCCCCCeEE--EeCCCCCCCCCCCCCCEEEEEEcCcchhhHHHHHHHHHHhccccCccccccccccCCCCCCCC
Q 002525 697 RAERENNSRGFPKIL--IDGPYGAPAQDYKKYDVVLLVGLGIGATPMISIVKDIINNMKSEDNNLESGLTVNNNNKNSSF 774 (912)
Q Consensus 697 ~~~~~~~~~~~~~v~--IdGPYG~~~~~~~~y~~vllVagGiGITP~lsiL~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 774 (912)
.+..+. +.||+|.+..+......+||||||+||||++|++++.........
T Consensus 208 ---------~Gd~v~v~i~~p~g~F~l~~~~~~piImIa~GtGIAP~~s~l~~~~~~~~~~~------------------ 260 (384)
T cd06206 208 ---------PGDSIHVSVRPSHSAFRPPSDPSTPLIMIAAGTGLAPFRGFLQERAALLAQGR------------------ 260 (384)
T ss_pred ---------CCCeEEEEEecCCCccCCCCCCCCCEEEEeCCCCcHHHHHHHHHHHHHHhcCC------------------
Confidence 345555 569999876443445689999999999999999998765422110
Q ss_pred CcceEEEEEEeCCC-CcHHHHHHHHHHHHhhcCCCcEEEEEeeccccCCCChhHHHHHHHhhhccccCCcccccCCcccc
Q 002525 775 NTRKAYFYWVTREQ-GSFEWFKGIMNEVAEMDEKRVIELHNYCTSVYEEGDARSALIAMLQSLHHAKNGVDVVSGTRVKS 853 (912)
Q Consensus 775 ~~~rv~l~W~~R~~-~~~~wf~~~L~el~~~~~~~~i~i~iy~T~~~~~~d~~s~l~~~~q~l~~~~~~~d~~sg~~v~~ 853 (912)
...++.|+|++|+. .++ .|.+++.++++. +.++++..+++..+.... .+.+ .+
T Consensus 261 ~~~~v~L~~G~R~~~~d~-ly~~el~~~~~~---~~~~l~~a~Sr~~~~~~~-------------------yVq~-~i-- 314 (384)
T cd06206 261 KLAPALLFFGCRHPDHDD-LYRDELEEWEAA---GVVSVRRAYSRPPGGGCR-------------------YVQD-RL-- 314 (384)
T ss_pred CcCCEEEEEeCCCCCccc-chHHHHHHHHHC---CCeEEEEEecccCCCCCE-------------------echh-hH--
Confidence 13579999999999 665 688889888762 457777766653210000 0000 00
Q ss_pred ccCCCCHHHHHHHHHhhCCCCeEEEEEeCChHHHHHHHHHHHhhccC
Q 002525 854 HFAKPNWRQVYKRIALHHPDSRIGVFYCGAPALTKELRQLASDFSHK 900 (912)
Q Consensus 854 ~~gRPd~~~vl~~~~~~~~~~~v~V~~CGP~~m~~~vr~~~~~~~~~ 900 (912)
+-+.+++...+ . +...||+|||++|+++|++++.+...+
T Consensus 315 ---~~~~~~~~~~~-~----~~~~vyiCGp~~M~~~v~~~L~~i~~~ 353 (384)
T cd06206 315 ---WAEREEVWELW-E----QGARVYVCGDGRMAPGVREVLKRIYAE 353 (384)
T ss_pred ---HhhHHHHHHHH-H----CCcEEEEECCCchHHHHHHHHHHHHHH
Confidence 00111221111 1 235799999999999999988776543
No 79
>cd06207 CyPoR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced fe
Probab=99.58 E-value=2.7e-14 Score=163.11 Aligned_cols=179 Identities=13% Similarity=0.206 Sum_probs=119.6
Q ss_pred CCcccceeeeecCC--CCeEEEEEEec-----------CcchHHHHHHHhhccCCCCCCCCccchhhhccCCCCCCeEEE
Q 002525 646 PFEWHPFSITSSPG--DDYLSVHIRTL-----------GDWTRQLKTVFSEVCQPAPAGKSGLLRAERENNSRGFPKILI 712 (912)
Q Consensus 646 ~~e~HPFTIaS~p~--~~~l~l~Ir~~-----------G~~T~~L~~~~~~~~~~~~~g~sg~~~~~~~~~~~~~~~v~I 712 (912)
+.+.+||||+|+|. .+.++|+|+.. |-.|+.|.++ ..+..+.|
T Consensus 161 ~l~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l------------------------~~Gd~v~v 216 (382)
T cd06207 161 LIKPRYYSISSSPLKNPNEVHLLVSLVSWKTPSGRSRYGLCSSYLAGL------------------------KVGQRVTV 216 (382)
T ss_pred CCCCceeeecCCCcCCCCeEEEEEEEEEeeCCCCCeecccHHHHHhhc------------------------CCCCEEEE
Confidence 46889999999996 47899999975 5566666542 24678999
Q ss_pred eCCCCCCCCCCCCCCEEEEEEcCcchhhHHHHHHHHHHhccccCccccccccccCCCCCCCCCcceEEEEEEeCCC-CcH
Q 002525 713 DGPYGAPAQDYKKYDVVLLVGLGIGATPMISIVKDIINNMKSEDNNLESGLTVNNNNKNSSFNTRKAYFYWVTREQ-GSF 791 (912)
Q Consensus 713 dGPYG~~~~~~~~y~~vllVagGiGITP~lsiL~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~l~W~~R~~-~~~ 791 (912)
.||+|.+..+......++|||+|+|||||+|++++.....+... ...++.|+|++|+. .++
T Consensus 217 ~~p~g~F~lp~~~~~plImIa~GtGIAP~rs~l~~~~~~~~~~~------------------~~~~~~L~~G~R~~~~d~ 278 (382)
T cd06207 217 FIKKSSFKLPKDPKKPIIMVGPGTGLAPFRAFLQERAALLAQGP------------------EIGPVLLYFGCRHEDKDY 278 (382)
T ss_pred EEECCcccCCCCCCCCEEEEcCCccHHHHHHHHHHHHHHhhcCc------------------cCCCEEEEECCCCCCccc
Confidence 99999875433334579999999999999999998764422211 24689999999998 665
Q ss_pred HHHHHHHHHHHhhcCCCcEEEEEeeccccCCCChhHHHHHHHhhhccccCCcccccCCccccccCCCCHHHHHHHHHhhC
Q 002525 792 EWFKGIMNEVAEMDEKRVIELHNYCTSVYEEGDARSALIAMLQSLHHAKNGVDVVSGTRVKSHFAKPNWRQVYKRIALHH 871 (912)
Q Consensus 792 ~wf~~~L~el~~~~~~~~i~i~iy~T~~~~~~d~~s~l~~~~q~l~~~~~~~d~~sg~~v~~~~gRPd~~~vl~~~~~~~ 871 (912)
.|++++.++++.. ..++++...++.... .. .+| +..+-+.+.+.+.+ .
T Consensus 279 -~y~~el~~~~~~~--~~~~~~~a~Srd~~~-~~------yVq-------------------~~l~~~~~~~~~~l-~-- 326 (382)
T cd06207 279 -LYKEELEEYEKSG--VLTTLGTAFSRDQPK-KV------YVQ-------------------DLIRENSDLVYQLL-E-- 326 (382)
T ss_pred -cHHHHHHHHHhCC--CCceEEEEecCCCCC-ce------EhH-------------------HHHHHCHHHHHHHH-h--
Confidence 6888888887642 245666656542110 00 000 00011112222211 1
Q ss_pred CCCeEEEEEeCChH-HHHHHHHHHHhhcc
Q 002525 872 PDSRIGVFYCGAPA-LTKELRQLASDFSH 899 (912)
Q Consensus 872 ~~~~v~V~~CGP~~-m~~~vr~~~~~~~~ 899 (912)
.+...||+|||++ |+++|++++.+...
T Consensus 327 -~~~~~vYvCG~~~~M~~~V~~~L~~~~~ 354 (382)
T cd06207 327 -EGAGVIYVCGSTWKMPPDVQEAFEEILK 354 (382)
T ss_pred -cCCCEEEEECCcccccHHHHHHHHHHHH
Confidence 1224699999998 99999998877654
No 80
>PTZ00184 calmodulin; Provisional
Probab=99.57 E-value=2.1e-14 Score=141.09 Aligned_cols=136 Identities=15% Similarity=0.320 Sum_probs=111.8
Q ss_pred ChHHHHHHHHHHcCCCCCceeehhhhcccc---cCCCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHh-cCCChH
Q 002525 169 GWPAVEKRYNELAITTSDGLLHCSMFGECI---GMNKESKEFAGELFRGLCRKHNISGDSINKAQLKEFWDQI-SDESFD 244 (912)
Q Consensus 169 ~~~~l~~~F~~ld~~d~dG~I~~~ef~~~l---g~~~~~~~~~~~lf~~l~d~d~~~~G~Id~~EF~~~~~~~-~~~~~e 244 (912)
+++.+++.|+.+|. +++|.|+.+||..++ +..+ ..+.+..+|.. .+.+++ |.|+|+||+.++... .....+
T Consensus 9 ~~~~~~~~F~~~D~-~~~G~i~~~e~~~~l~~~~~~~-~~~~~~~~~~~-~d~~~~--g~i~~~ef~~~l~~~~~~~~~~ 83 (149)
T PTZ00184 9 QIAEFKEAFSLFDK-DGDGTITTKELGTVMRSLGQNP-TEAELQDMINE-VDADGN--GTIDFPEFLTLMARKMKDTDSE 83 (149)
T ss_pred HHHHHHHHHHHHcC-CCCCcCCHHHHHHHHHHhCCCC-CHHHHHHHHHh-cCcCCC--CcCcHHHHHHHHHHhccCCcHH
Confidence 67889999999998 999999999999876 5553 56678888884 445554 999999999998764 345567
Q ss_pred HHHHHHHhHhCCCCCCcccHHHHHHHHHhhhccCcccchHHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHh
Q 002525 245 SRLQTFFDMVDTDADGRITEEEVKEIISLSASANKLSNIQKQAEEYAAMIMEELDPDNAGYIMIHNLETLLLQ 317 (912)
Q Consensus 245 e~L~~aF~~fDkd~dG~It~eEl~~il~~~~~~~~l~~~~~~~ee~~~~i~~e~D~d~dG~Is~~EF~~~l~~ 317 (912)
+.++.+|+.+|+|++|+|+.+|++.++.... ..++ ++.+..+++.+|.|++|.|+|+||..+|..
T Consensus 84 ~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~--~~~~------~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 148 (149)
T PTZ00184 84 EEIKEAFKVFDRDGNGFISAAELRHVMTNLG--EKLT------DEEVDEMIREADVDGDGQINYEEFVKMMMS 148 (149)
T ss_pred HHHHHHHHhhCCCCCCeEeHHHHHHHHHHHC--CCCC------HHHHHHHHHhcCCCCCCcCcHHHHHHHHhc
Confidence 8899999999999999999999999997432 1222 456777999999999999999999998863
No 81
>TIGR01931 cysJ sulfite reductase [NADPH] flavoprotein, alpha-component. This model describes an NADPH-dependent sulfite reductase flavoprotein subunit. Most members of this family are found in Cys biosynthesis gene clusters. The closest homologs below the trusted cutoff are designated as subunits nitrate reductase.
Probab=99.54 E-value=4.5e-14 Score=169.25 Aligned_cols=184 Identities=11% Similarity=0.164 Sum_probs=124.6
Q ss_pred ccccCccEEEEEeCCCCCCcccceeeeecCC--CCeEEEEEEec----------CcchHHHHHHHhhccCCCCCCCCccc
Q 002525 629 FKYKSGQYMFVNCAAVSPFEWHPFSITSSPG--DDYLSVHIRTL----------GDWTRQLKTVFSEVCQPAPAGKSGLL 696 (912)
Q Consensus 629 ~~~~pGQyv~l~~p~~s~~e~HPFTIaS~p~--~~~l~l~Ir~~----------G~~T~~L~~~~~~~~~~~~~g~sg~~ 696 (912)
+++.||||+.+..| .+.|||||+|+|. ++.+.|+|+.. |..|..|.+.+
T Consensus 367 ~~~~~gq~v~ll~~----~~~R~YSIaSsp~~~~~~l~ltV~~v~~~~~~~~~~G~~S~~L~~~l--------------- 427 (597)
T TIGR01931 367 ADLDAEQLISLLRP----LTPRLYSISSSQSEVGDEVHLTVGVVRYQAHGRARLGGASGFLAERL--------------- 427 (597)
T ss_pred CCCCHHHHHHhCcc----cCCceeeeccCcccCCCEEEEEEEEEEecCCCCccccchhHHHHhhC---------------
Confidence 57899999998875 4789999999995 56899999864 88888887644
Q ss_pred hhhhccCCCCCCeEEEeCCCC-CCCCCCCCCCEEEEEEcCcchhhHHHHHHHHHHhccccCccccccccccCCCCCCCCC
Q 002525 697 RAERENNSRGFPKILIDGPYG-APAQDYKKYDVVLLVGLGIGATPMISIVKDIINNMKSEDNNLESGLTVNNNNKNSSFN 775 (912)
Q Consensus 697 ~~~~~~~~~~~~~v~IdGPYG-~~~~~~~~y~~vllVagGiGITP~lsiL~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 775 (912)
..+..|.|.||.| .+..+......++|||+|+|||||+|+++++.... .
T Consensus 428 --------~~Gd~v~v~~~~~~~F~lp~~~~~piImIg~GTGIAPfrsflq~r~~~~----------------------~ 477 (597)
T TIGR01931 428 --------KEGDTVPVYIEPNDNFRLPEDPDTPIIMIGPGTGVAPFRAFMQERAEDG----------------------A 477 (597)
T ss_pred --------CCCCEEEEEEeeCCcccCCCCCCCCEEEEcCCcCchhHHHHHHHHHHcc----------------------C
Confidence 1467888988654 55433233457999999999999999999876541 1
Q ss_pred cceEEEEEEeCC-CCcHHHHHHHHHHHHhhcCCCcEEEEEeeccccCCCChhHHHHHHHhhhccccCCcccccCCccccc
Q 002525 776 TRKAYFYWVTRE-QGSFEWFKGIMNEVAEMDEKRVIELHNYCTSVYEEGDARSALIAMLQSLHHAKNGVDVVSGTRVKSH 854 (912)
Q Consensus 776 ~~rv~l~W~~R~-~~~~~wf~~~L~el~~~~~~~~i~i~iy~T~~~~~~d~~s~l~~~~q~l~~~~~~~d~~sg~~v~~~ 854 (912)
..++.|+|++|+ ..++ .|.++|.++.+... ..+++...++... .
T Consensus 478 ~g~~~LffG~R~~~~D~-ly~~El~~~~~~~~--l~~l~~afSRd~~--~------------------------------ 522 (597)
T TIGR01931 478 KGKNWLFFGNPHFTTDF-LYQVEWQNYLKKGV--LTKMDLAFSRDQA--E------------------------------ 522 (597)
T ss_pred CCCEEEEECCCCCCcch-hHHHHHHHHHHcCC--CceeEEEEecCCC--C------------------------------
Confidence 357899999998 5676 57888877765422 2344444454210 0
Q ss_pred cCCCCHHHHHHHHHhh----CCCCeEEEEEeC-ChHHHHHHHHHHHhhcc
Q 002525 855 FAKPNWRQVYKRIALH----HPDSRIGVFYCG-APALTKELRQLASDFSH 899 (912)
Q Consensus 855 ~gRPd~~~vl~~~~~~----~~~~~v~V~~CG-P~~m~~~vr~~~~~~~~ 899 (912)
+.-+.+.+.+.... ... ...||+|| |+.|+++|++++.+...
T Consensus 523 --k~yVqd~l~e~~~~~~~~l~~-~a~vYvCG~~~~M~~~V~~~L~~i~~ 569 (597)
T TIGR01931 523 --KIYVQHRIREQGAELWQWLQE-GAHIYVCGDAKKMAKDVHQALLDIIA 569 (597)
T ss_pred --CccHHHHHHHhHHHHHHHHhC-CcEEEEECCCccccHHHHHHHHHHHH
Confidence 00011112111100 001 24699999 88999999998877654
No 82
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.53 E-value=6e-14 Score=134.06 Aligned_cols=137 Identities=15% Similarity=0.266 Sum_probs=109.8
Q ss_pred ChHHHHHHHHHHcCCCCCceeehhhhccc---ccCCCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHH-hcCCChH
Q 002525 169 GWPAVEKRYNELAITTSDGLLHCSMFGEC---IGMNKESKEFAGELFRGLCRKHNISGDSINKAQLKEFWDQ-ISDESFD 244 (912)
Q Consensus 169 ~~~~l~~~F~~ld~~d~dG~I~~~ef~~~---lg~~~~~~~~~~~lf~~l~d~d~~~~G~Id~~EF~~~~~~-~~~~~~e 244 (912)
+-.+++..|+.+|. +++|+|+.+||+.+ +|..+ .++.+.++ +.+.|.++.|.|+|++|+..+.. +....+.
T Consensus 31 q~q~i~e~f~lfd~-~~~g~iD~~EL~vAmralGFE~-~k~ei~kl---l~d~dk~~~g~i~fe~f~~~mt~k~~e~dt~ 105 (172)
T KOG0028|consen 31 QKQEIKEAFELFDP-DMAGKIDVEELKVAMRALGFEP-KKEEILKL---LADVDKEGSGKITFEDFRRVMTVKLGERDTK 105 (172)
T ss_pred HHhhHHHHHHhhcc-CCCCcccHHHHHHHHHHcCCCc-chHHHHHH---HHhhhhccCceechHHHHHHHHHHHhccCcH
Confidence 33557888998887 89999999999654 47664 44434444 45555555599999999998765 6677799
Q ss_pred HHHHHHHhHhCCCCCCcccHHHHHHHHHhhhccCcccchHHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhC
Q 002525 245 SRLQTFFDMVDTDADGRITEEEVKEIISLSASANKLSNIQKQAEEYAAMIMEELDPDNAGYIMIHNLETLLLQA 318 (912)
Q Consensus 245 e~L~~aF~~fDkd~dG~It~eEl~~il~~~~~~~~l~~~~~~~ee~~~~i~~e~D~d~dG~Is~~EF~~~l~~~ 318 (912)
+.++.+|+.||.|++|.|+..+|+.+....+. .+. ++.+.+|++|+|.|+||.|+-+||..+|++-
T Consensus 106 eEi~~afrl~D~D~~Gkis~~~lkrvakeLge--nlt------D~El~eMIeEAd~d~dgevneeEF~~imk~t 171 (172)
T KOG0028|consen 106 EEIKKAFRLFDDDKTGKISQRNLKRVAKELGE--NLT------DEELMEMIEEADRDGDGEVNEEEFIRIMKKT 171 (172)
T ss_pred HHHHHHHHcccccCCCCcCHHHHHHHHHHhCc--ccc------HHHHHHHHHHhcccccccccHHHHHHHHhcC
Confidence 99999999999999999999999999874332 132 5677889999999999999999999999864
No 83
>cd06203 methionine_synthase_red Human methionine synthase reductase (MSR) restores methionine sythase which is responsible for the regeneration of methionine from homocysteine, as well as the coversion of methyltetrahydrofolate to tetrahydrofolate. In MSR, electrons are transferred from NADPH to FAD to FMN to cob(II)alamin. MSR resembles proteins of the cytochrome p450 family including nitric oxide synthase, the alpha subunit of sulfite reductase, but contains an extended hinge region. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPORs resemble ferredoxin reductase (FNR) but have a connecting subdomain inserted within the flavin binding region, which helps orient the FMN binding doamin with the FNR module. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme
Probab=99.45 E-value=1.8e-12 Score=148.76 Aligned_cols=136 Identities=18% Similarity=0.200 Sum_probs=96.0
Q ss_pred CCcccceeeeecCCC--CeEEEEEEec-----CcchHHHHHHHhhccCCCCCCCCccchhhhccCCCCCCeEEEeC-CCC
Q 002525 646 PFEWHPFSITSSPGD--DYLSVHIRTL-----GDWTRQLKTVFSEVCQPAPAGKSGLLRAERENNSRGFPKILIDG-PYG 717 (912)
Q Consensus 646 ~~e~HPFTIaS~p~~--~~l~l~Ir~~-----G~~T~~L~~~~~~~~~~~~~g~sg~~~~~~~~~~~~~~~v~IdG-PYG 717 (912)
+.+.|+|||+|+|.. +.++++|+.. |-.|..|.++.... ...+..+.+.| |.|
T Consensus 171 ~~~~R~YSIsSsp~~~~~~i~l~v~~v~~~~~G~~S~~L~~l~~~~-------------------~~~G~~v~i~~~~~g 231 (398)
T cd06203 171 RLQPRPYSIASSPLEGPGKLRFIFSVVEFPAKGLCTSWLESLCLSA-------------------SSHGVKVPFYLRSSS 231 (398)
T ss_pred cCCCcceeecCCcccCCCeEEEEEEEEEecCCChhhHHHHHhhhhh-------------------cCCCCEEEEEEecCC
Confidence 458899999999964 7899998875 56788887765210 01366788988 677
Q ss_pred CCCCCCC-CCCEEEEEEcCcchhhHHHHHHHHHHhccccCccccccccccCCCCCCCCCcceEEEEEEeCCC-CcHHHHH
Q 002525 718 APAQDYK-KYDVVLLVGLGIGATPMISIVKDIINNMKSEDNNLESGLTVNNNNKNSSFNTRKAYFYWVTREQ-GSFEWFK 795 (912)
Q Consensus 718 ~~~~~~~-~y~~vllVagGiGITP~lsiL~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~l~W~~R~~-~~~~wf~ 795 (912)
.+..+.. ....++|||+|+|||||+|++++.....+... .....++.|+|++|+. .++ .|.
T Consensus 232 ~F~lp~~~~~~piImIa~GtGIAP~rs~lq~~~~~~~~~~----------------~~~~~~~~Lf~G~R~~~~d~-~y~ 294 (398)
T cd06203 232 RFRLPPDDLRRPIIMVGPGTGVAPFLGFLQHREKLKESHT----------------ETVFGEAWLFFGCRHRDRDY-LFR 294 (398)
T ss_pred CcCCCCcCCCCCEEEEcCCcChHHHHHHHHHHHHHHhhcc----------------cCCCCCEEEEEeCCCCCcch-hHH
Confidence 6654333 34679999999999999999998765321100 0124679999999999 576 688
Q ss_pred HHHHHHHhhcCCCcEEEEEeeccc
Q 002525 796 GIMNEVAEMDEKRVIELHNYCTSV 819 (912)
Q Consensus 796 ~~L~el~~~~~~~~i~i~iy~T~~ 819 (912)
++|+++++.. ...++++.+++.
T Consensus 295 ~El~~~~~~~--~~~~~~~a~SRd 316 (398)
T cd06203 295 DELEEFLEEG--ILTRLIVAFSRD 316 (398)
T ss_pred HHHHHHHHcC--CCceEEEEECCC
Confidence 8898887643 234566656653
No 84
>PF01794 Ferric_reduct: Ferric reductase like transmembrane component; InterPro: IPR013130 This family includes a common region in the transmembrane proteins mammalian cytochrome b-245 heavy chain (gp91-phox), ferric reductase transmembrane component in yeast and respiratory burst oxidase from Arabidopsis thaliana. This may be a family of flavocytochromes capable of moving electrons across the plasma membrane [] that include a potential FAD binding domain. Mutations in the sequence of cytochrome b-245 heavy chain (gp91-phox) lead to the X-linked chronic granulomatous disease. The bacteriocidal ability of phagocytic cells is reduced and is characterised by the absence of a functional plasma membrane associated NADPH oxidase [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0016021 integral to membrane
Probab=99.45 E-value=1.4e-13 Score=131.75 Aligned_cols=122 Identities=26% Similarity=0.395 Sum_probs=92.4
Q ss_pred hhhhhhHHHHHHHHHhhhH-HHhhcccccccccccCccchhHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccc
Q 002525 407 AETLKFNMALILLPVCRNT-ITWLRNKTKLGLVVPFDDNLNFHKVIAVGIGIGVILHGGAHLTCDFPRLLHATEEEYEPM 485 (912)
Q Consensus 407 a~~l~~n~~lill~~~Rn~-i~~Lr~~t~l~~~v~~d~~~~fHr~ia~~~~v~~~lH~i~~~~~~f~~~~~~~~~~~~~~ 485 (912)
|.....|+++++++++||+ +.++++ +|+|+.+.+|||+|+++++++++|++.|+...+... ..+
T Consensus 2 G~~a~~~l~~~~~l~~R~~~l~~~~~-------~~~~~~~~~Hr~lg~~~~~~~~~H~~~~~~~~~~~~--~~~------ 66 (125)
T PF01794_consen 2 GILAFALLPLVFLLGLRNSPLARLTG-------ISFDRLLRFHRWLGRLAFFLALLHGVLYLINWLRFG--GWD------ 66 (125)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHhC-------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhc------
Confidence 3445678999999999985 566665 899999999999999999999999999987632110 000
Q ss_pred cCccCCCCCCccceeccccchhHHHHHHHHHHHHHHhhhhhhhhccCCCCCccccccccchhhhHHHHHHHHHHHH
Q 002525 486 KPYFGDEQPDNYWWFVKGVEGVTGIIMVVLMVIAFTLATPWFRRNKLNLPKPLKRLTGFNAFWYSHHLFIIVYTLL 561 (912)
Q Consensus 486 ~~~~~~~~~~~y~~~~~~~~g~tGii~~vl~~i~~~~s~~~~Rr~~~~~~~~l~~~~~ye~F~~~H~l~~i~~vll 561 (912)
....++.........+|+++++++.+++++|.+++||++ .||.|+++|++++++++++
T Consensus 67 -------~~~~~~~~~~~~~~~~G~~a~~~l~~l~~tS~~~~R~r~-----------~ye~f~~~H~~~~~~~~l~ 124 (125)
T PF01794_consen 67 -------WQEWFNAWLTGPYNLTGIIALLLLLILAVTSFPWIRRRR-----------NYEIFYYLHILFYIAFLLA 124 (125)
T ss_pred -------hhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhC-----------cHHHHHHHHHHHHHHHHHH
Confidence 000111222334567999999999999999999999543 7999999999998887653
No 85
>cd06204 CYPOR NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredo
Probab=99.43 E-value=2.1e-12 Score=148.90 Aligned_cols=194 Identities=17% Similarity=0.235 Sum_probs=119.4
Q ss_pred CCcccceeeeecCC--CCeEEEEEEec-----------CcchHHHHHHHhhccC--CC-CCCCCccchhhhccCCCCCCe
Q 002525 646 PFEWHPFSITSSPG--DDYLSVHIRTL-----------GDWTRQLKTVFSEVCQ--PA-PAGKSGLLRAERENNSRGFPK 709 (912)
Q Consensus 646 ~~e~HPFTIaS~p~--~~~l~l~Ir~~-----------G~~T~~L~~~~~~~~~--~~-~~g~sg~~~~~~~~~~~~~~~ 709 (912)
+.+.++|||+|+|. .+.+++.|+.. |-.|..|.+....... .+ ..-.+|- .+...+..
T Consensus 175 ~~~pR~YSIsSsp~~~~~~i~ltV~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~~~~~~~~------~~~~~g~~ 248 (416)
T cd06204 175 RLQPRYYSISSSSKVHPNRIHITAVVVKYPTPTGRIIKGVATNWLLALKPALNGEKPPTPYYLSGP------RKKGGGSK 248 (416)
T ss_pred cCCCcceeeccCccCCCCEEEEEEEEEEeeCCCCCEEeeeehHHHHhhhhhhcccccccccccccc------cccCCCCe
Confidence 46899999999995 46788887753 5567778775521000 00 0000000 01114678
Q ss_pred EEEeCCCCCCCCCCCCCCEEEEEEcCcchhhHHHHHHHHHHhccccCccccccccccCCCCCCCCCcceEEEEEEeCCC-
Q 002525 710 ILIDGPYGAPAQDYKKYDVVLLVGLGIGATPMISIVKDIINNMKSEDNNLESGLTVNNNNKNSSFNTRKAYFYWVTREQ- 788 (912)
Q Consensus 710 v~IdGPYG~~~~~~~~y~~vllVagGiGITP~lsiL~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~l~W~~R~~- 788 (912)
+.+.+|.|.+..+......+||||||+||||++|++++.....+.+. ...++.|+|++|+.
T Consensus 249 v~v~~~~g~F~lp~~~~~piImIa~GtGIAP~~s~l~~~~~~~~~~~------------------~~~~v~L~~G~R~~~ 310 (416)
T cd06204 249 VPVFVRRSNFRLPTKPSTPVIMIGPGTGVAPFRGFIQERAALKESGK------------------KVGPTLLFFGCRHPD 310 (416)
T ss_pred EEEEEecCCCCCCCCCCCCEEEEeCCcchHHHHHHHHHHHHHhhccC------------------ccCCEEEEEcCCCCC
Confidence 88988999875433334689999999999999999998764322110 13579999999998
Q ss_pred CcHHHHHHHHHHHHhhcCCCcEEEEEeeccccCCCChhHHHHHHHhhhccccCCcccccCCccccccCCC--CHHHHHHH
Q 002525 789 GSFEWFKGIMNEVAEMDEKRVIELHNYCTSVYEEGDARSALIAMLQSLHHAKNGVDVVSGTRVKSHFAKP--NWRQVYKR 866 (912)
Q Consensus 789 ~~~~wf~~~L~el~~~~~~~~i~i~iy~T~~~~~~d~~s~l~~~~q~l~~~~~~~d~~sg~~v~~~~gRP--d~~~vl~~ 866 (912)
.++ .|.++++++++.. ..++++..+++..+... .+| +|- +.+.+...
T Consensus 311 ~d~-ly~~el~~~~~~~--~~~~l~~a~Sr~~~~k~-------yVq---------------------~~i~~~~~~~~~~ 359 (416)
T cd06204 311 EDF-IYKDELEEYAKLG--GLLELVTAFSREQPKKV-------YVQ---------------------HRLAEHAEQVWEL 359 (416)
T ss_pred ccc-chHHHHHHHHHcC--CceEEEEEECcCCCCCc-------chH---------------------HHHHHhHHHHHHH
Confidence 565 5788888887632 34666666665311000 000 000 11122111
Q ss_pred HHhhCCCCeEEEEEeCChH-HHHHHHHHHHhhcc
Q 002525 867 IALHHPDSRIGVFYCGAPA-LTKELRQLASDFSH 899 (912)
Q Consensus 867 ~~~~~~~~~v~V~~CGP~~-m~~~vr~~~~~~~~ 899 (912)
+ . +...||+|||++ |+++|+++..+...
T Consensus 360 l-~----~~~~vYvCGp~~~M~~~V~~~L~~i~~ 388 (416)
T cd06204 360 I-N----EGAYIYVCGDAKNMARDVEKTLLEILA 388 (416)
T ss_pred H-H----cCCEEEEECCcccchHHHHHHHHHHHH
Confidence 1 1 125799999998 99999988777643
No 86
>COG2871 NqrF Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion]
Probab=99.41 E-value=1.9e-12 Score=134.08 Aligned_cols=215 Identities=18% Similarity=0.362 Sum_probs=142.1
Q ss_pred EEEEEecCC--CccccCccEEEEEeCCCC----C----------C---------------cccceeeeecCCC-CeEEEE
Q 002525 619 LALHMSKPQ--GFKYKSGQYMFVNCAAVS----P----------F---------------EWHPFSITSSPGD-DYLSVH 666 (912)
Q Consensus 619 ~~l~~~~p~--~~~~~pGQyv~l~~p~~s----~----------~---------------e~HPFTIaS~p~~-~~l~l~ 666 (912)
-+|.+..|. ...++||-|+.|.+|.-. - | .-+.||++|-|++ ..+.|-
T Consensus 150 KEL~laip~g~~vpFraGGyiQie~pph~v~y~Dfdi~~eY~~DWdkf~lf~~vs~v~e~~~rAYSmAsYPeE~giI~~N 229 (410)
T COG2871 150 KELKLAIPEGEEVPFRAGGYIQIEAPPHTVNYKDFDIPPEYHEDWDKFNLFRYVSKVDEPIIRAYSMASYPEEKGIIKLN 229 (410)
T ss_pred hhheeeCCCCCccccCCCceEEEecCCccccccccCCChhHhcchhhhchheeeccccHHHHHHhhhhcChhhcCeEEEE
Confidence 345555554 578999999999998521 0 1 1256788888865 456777
Q ss_pred EEecCcchHHHHHHHhhccCCCCCCC--CccchhhhccCCCCCCeEEEeCCCCCCCCCCCCCCEEEEEEcCcchhhHHHH
Q 002525 667 IRTLGDWTRQLKTVFSEVCQPAPAGK--SGLLRAERENNSRGFPKILIDGPYGAPAQDYKKYDVVLLVGLGIGATPMISI 744 (912)
Q Consensus 667 Ir~~G~~T~~L~~~~~~~~~~~~~g~--sg~~~~~~~~~~~~~~~v~IdGPYG~~~~~~~~y~~vllVagGiGITP~lsi 744 (912)
||.... |+..+. .|.+. .+.-+-.++++|.|.||||.+... .....+|+++||.|.+|+.|.
T Consensus 230 vRIAtP--------------Pp~~~~~PpG~mS-Syi~sLKpGDKvtisGPfGEfFaK-dtdaemvFigGGAGmapmRSH 293 (410)
T COG2871 230 VRIATP--------------PPRNPDAPPGQMS-SYIWSLKPGDKVTISGPFGEFFAK-DTDAEMVFIGGGAGMAPMRSH 293 (410)
T ss_pred EEeccC--------------CCCCCCCCcccee-eeEEeecCCCeEEEeccchhhhhc-cCCCceEEEecCcCcCchHHH
Confidence 776421 111100 01110 111134578999999999997532 233468899999999999999
Q ss_pred HHHHHHhccccCccccccccccCCCCCCCCCcceEEEEEEeCCCCcHHHHHHHHHHHHhhcCCCcEEEEEeeccccCCCC
Q 002525 745 VKDIINNMKSEDNNLESGLTVNNNNKNSSFNTRKAYFYWVTREQGSFEWFKGIMNEVAEMDEKRVIELHNYCTSVYEEGD 824 (912)
Q Consensus 745 L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~l~W~~R~~~~~~wf~~~L~el~~~~~~~~i~i~iy~T~~~~~~d 824 (912)
+-|++.+.+. .|++.|.|..|+..+. .+.+..++|++.. .++.-|+-++....++.
T Consensus 294 IfDqL~rlhS---------------------kRkis~WYGARS~rE~-fY~Ed~d~L~ae~--pNF~wH~aLSdplpEDn 349 (410)
T COG2871 294 IFDQLKRLHS---------------------KRKISFWYGARSLREM-FYQEDFDQLQAEN--PNFHWHLALSDPLPEDN 349 (410)
T ss_pred HHHHHHhhcc---------------------cceeeeeeccchHHHh-HHHHHHHHHHhhC--CCcEEEEEecCCCCcCC
Confidence 9998877543 5899999999999986 6788889988765 46888888876544322
Q ss_pred hhHHHHHHHhhhccccCCcccccCCccccccCCCCHHHHHHHHHhhCC-CCeEEEEEeCChHHHHHHHHHHHhhccC
Q 002525 825 ARSALIAMLQSLHHAKNGVDVVSGTRVKSHFAKPNWRQVYKRIALHHP-DSRIGVFYCGAPALTKELRQLASDFSHK 900 (912)
Q Consensus 825 ~~s~l~~~~q~l~~~~~~~d~~sg~~v~~~~gRPd~~~vl~~~~~~~~-~~~v~V~~CGP~~m~~~vr~~~~~~~~~ 900 (912)
.|-.+|. +| ..+.....+.|+ .++...|+||||-|...|-++..++...
T Consensus 350 ------------------W~g~TgF---ih------nv~~en~Lk~h~aPEDceyYmCGPp~mNasvikmL~dlGVE 399 (410)
T COG2871 350 ------------------WDGYTGF---IH------NVLYENYLKDHEAPEDCEYYMCGPPLMNASVIKMLKDLGVE 399 (410)
T ss_pred ------------------cccchhH---HH------HHHHhhhhhcCCCchheeEEeeCcchhhHHHHHHHHhcCcc
Confidence 2212221 11 112222333343 3578999999999999999999988653
No 87
>PRK06214 sulfite reductase; Provisional
Probab=99.40 E-value=6.1e-12 Score=147.36 Aligned_cols=125 Identities=15% Similarity=0.282 Sum_probs=87.4
Q ss_pred CCCcccceeeeecCC--CCeEEEEEEec----------CcchHHHHHHHhhccCCCCCCCCccchhhhccCCCCCCeEEE
Q 002525 645 SPFEWHPFSITSSPG--DDYLSVHIRTL----------GDWTRQLKTVFSEVCQPAPAGKSGLLRAERENNSRGFPKILI 712 (912)
Q Consensus 645 s~~e~HPFTIaS~p~--~~~l~l~Ir~~----------G~~T~~L~~~~~~~~~~~~~g~sg~~~~~~~~~~~~~~~v~I 712 (912)
.+.+.|||||+|+|. .+.++|+|+.. |..|..|.+.+ ..+..+.|
T Consensus 312 p~l~pR~YSISSsP~~~~~~i~ltV~~V~~~~~~~~~~G~~S~~L~~~l-----------------------~~Gd~V~v 368 (530)
T PRK06214 312 DPLQPRLYSISSSPKATPGRVSLTVDAVRYEIGSRLRLGVASTFLGERL-----------------------APGTRVRV 368 (530)
T ss_pred CCCCcEEEEeccCCcCCCCEEEEEEEEEeeccCCccccchhhHHHHhcC-----------------------CCCCEEEE
Confidence 346899999999995 47899999864 66777776543 12444544
Q ss_pred --eCCCCCCCCCCCCCCEEEEEEcCcchhhHHHHHHHHHHhccccCccccccccccCCCCCCCCCcceEEEEEEeCCC-C
Q 002525 713 --DGPYGAPAQDYKKYDVVLLVGLGIGATPMISIVKDIINNMKSEDNNLESGLTVNNNNKNSSFNTRKAYFYWVTREQ-G 789 (912)
Q Consensus 713 --dGPYG~~~~~~~~y~~vllVagGiGITP~lsiL~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~l~W~~R~~-~ 789 (912)
.+|+| +..+......+||||+|+|||||+|+|++..... ...++.|+|.+|.. .
T Consensus 369 ~i~~~~g-F~lp~~~~~PiImIg~GTGIAPfrsfLq~r~~~~----------------------~~g~~~LffG~R~~~~ 425 (530)
T PRK06214 369 YVQKAHG-FALPADPNTPIIMVGPGTGIAPFRAFLHERAATK----------------------APGRNWLFFGHQRSAT 425 (530)
T ss_pred EecCCCC-CccCCCCCCCEEEEcCCeeHHHHHHHHHHHHHhc----------------------CCCCeEEEEEecCChh
Confidence 56777 5433333457999999999999999999865431 13568999999664 4
Q ss_pred cHHHHHHHHHHHHhhcCCCcEEEEEeecc
Q 002525 790 SFEWFKGIMNEVAEMDEKRVIELHNYCTS 818 (912)
Q Consensus 790 ~~~wf~~~L~el~~~~~~~~i~i~iy~T~ 818 (912)
++ .|.++|+++.+.. ...++++..++
T Consensus 426 D~-ly~dEL~~l~~~g--~l~~l~~afSR 451 (530)
T PRK06214 426 DF-FYEDELNGLKAAG--VLTRLSLAWSR 451 (530)
T ss_pred hh-HHHHHHHHHHHhC--CceEEEEEEec
Confidence 55 6889898887642 23445555554
No 88
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.39 E-value=5.8e-12 Score=119.65 Aligned_cols=132 Identities=14% Similarity=0.282 Sum_probs=113.2
Q ss_pred ChHHHHHHHHHHcCCCCCceeehhhhcccc---cCCCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHH-hcCCChH
Q 002525 169 GWPAVEKRYNELAITTSDGLLHCSMFGECI---GMNKESKEFAGELFRGLCRKHNISGDSINKAQLKEFWDQ-ISDESFD 244 (912)
Q Consensus 169 ~~~~l~~~F~~ld~~d~dG~I~~~ef~~~l---g~~~~~~~~~~~lf~~l~d~d~~~~G~Id~~EF~~~~~~-~~~~~~e 244 (912)
+|.++++.|..||. |+||.|++++++..+ |... +++++..++.- .. |.|+|.-|+...-. ++..+++
T Consensus 30 QIqEfKEAF~~mDq-nrDG~IdkeDL~d~~aSlGk~~-~d~elDaM~~E-----a~--gPINft~FLTmfGekL~gtdpe 100 (171)
T KOG0031|consen 30 QIQEFKEAFNLMDQ-NRDGFIDKEDLRDMLASLGKIA-SDEELDAMMKE-----AP--GPINFTVFLTMFGEKLNGTDPE 100 (171)
T ss_pred HHHHHHHHHHHHhc-cCCCcccHHHHHHHHHHcCCCC-CHHHHHHHHHh-----CC--CCeeHHHHHHHHHHHhcCCCHH
Confidence 79999999999998 999999999999887 6663 66667777662 22 89999999998754 6778899
Q ss_pred HHHHHHHhHhCCCCCCcccHHHHHHHHHhhhccCcccchHHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHh
Q 002525 245 SRLQTFFDMVDTDADGRITEEEVKEIISLSASANKLSNIQKQAEEYAAMIMEELDPDNAGYIMIHNLETLLLQ 317 (912)
Q Consensus 245 e~L~~aF~~fDkd~dG~It~eEl~~il~~~~~~~~l~~~~~~~ee~~~~i~~e~D~d~dG~Is~~EF~~~l~~ 317 (912)
+-+..||+.||.+++|.|..+.|+++|...+ ...+ +++++++++++=+|..|.|+|.+|..++..
T Consensus 101 ~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~g--Dr~~------~eEV~~m~r~~p~d~~G~~dy~~~~~~ith 165 (171)
T KOG0031|consen 101 EVILNAFKTFDDEGSGKIDEDYLRELLTTMG--DRFT------DEEVDEMYREAPIDKKGNFDYKAFTYIITH 165 (171)
T ss_pred HHHHHHHHhcCccCCCccCHHHHHHHHHHhc--ccCC------HHHHHHHHHhCCcccCCceeHHHHHHHHHc
Confidence 9999999999999999999999999997533 3333 677888999999999999999999999984
No 89
>cd06202 Nitric_oxide_synthase The ferredoxin-reductase (FNR) like C-terminal domain of the nitric oxide synthase (NOS) fuses with a heme-containing N-terminal oxidase domain. The reductase portion is similar in structure to NADPH dependent cytochrome-450 reductase (CYPOR), having an inserted connecting sub-domain within the FAD binding portion of FNR. NOS differs from CYPOR in a requirement for the cofactor tetrahydrobiopterin and unlike most CYPOR is dimeric. Nitric oxide synthase produces nitric oxide in the conversion of L-arginine to L-citruline. NOS has been implicated in a variety of processes including cytotoxicity, anti-inflamation, neurotransmission, and vascular smooth muscle relaxation.
Probab=99.38 E-value=6.9e-12 Score=144.23 Aligned_cols=183 Identities=14% Similarity=0.167 Sum_probs=110.6
Q ss_pred CcccceeeeecCC--CCeEEEEEEec-------------CcchHHHHHHHhhccCCCCCCCCccchhhhccCCCCCCeEE
Q 002525 647 FEWHPFSITSSPG--DDYLSVHIRTL-------------GDWTRQLKTVFSEVCQPAPAGKSGLLRAERENNSRGFPKIL 711 (912)
Q Consensus 647 ~e~HPFTIaS~p~--~~~l~l~Ir~~-------------G~~T~~L~~~~~~~~~~~~~g~sg~~~~~~~~~~~~~~~v~ 711 (912)
.+.+||||+|+|. .+.+.+.|+.. |-.|+.|.++. .+..|.
T Consensus 175 l~pR~YSIsSsp~~~~~~~~l~v~vv~~~~~~~~~~~~~G~~S~~L~~l~------------------------~Gd~v~ 230 (406)
T cd06202 175 LQPRYYSISSSPDMYPGEIHLTVAVVSYRTRDGQGPVHHGVCSTWLNGLT------------------------PGDTVP 230 (406)
T ss_pred cCCcccccCCCccCCCCeEEEEEEEEEEECCCCCCCcccccHHHHHHhCC------------------------CCCEEE
Confidence 5789999999995 45677776653 55666664422 456777
Q ss_pred EeCCCC-CCCCCCCCCCEEEEEEcCcchhhHHHHHHHHHHhccccCccccccccccCCCCCCCCCcceEEEEEEeCCC-C
Q 002525 712 IDGPYG-APAQDYKKYDVVLLVGLGIGATPMISIVKDIINNMKSEDNNLESGLTVNNNNKNSSFNTRKAYFYWVTREQ-G 789 (912)
Q Consensus 712 IdGPYG-~~~~~~~~y~~vllVagGiGITP~lsiL~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~l~W~~R~~-~ 789 (912)
+.+|.| .+..+-.....++|||+|+|||||+|+|++.....+.... ......++.|++++|+. .
T Consensus 231 v~~~~~~~F~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~~~~~--------------~~~~~g~v~L~~G~R~~~~ 296 (406)
T cd06202 231 CFVRSAPSFHLPEDPSVPVIMVGPGTGIAPFRSFWQQRQYDLRMSED--------------PGKKFGDMTLFFGCRNSTI 296 (406)
T ss_pred EEEeeCCccCCCCCCCCCEEEEcCCcChHHHHHHHHHHHHHhhhccc--------------ccCCCCCEEEEEcCCCCCc
Confidence 776533 4433223345799999999999999999986543210000 00124689999999999 5
Q ss_pred cHHHHHHHHHHHHhhcCCCcEEEEEeeccccCCCChhHHHHHHHhhhccccCCcccccCCccccccCCCCHHHHHHHHHh
Q 002525 790 SFEWFKGIMNEVAEMDEKRVIELHNYCTSVYEEGDARSALIAMLQSLHHAKNGVDVVSGTRVKSHFAKPNWRQVYKRIAL 869 (912)
Q Consensus 790 ~~~wf~~~L~el~~~~~~~~i~i~iy~T~~~~~~d~~s~l~~~~q~l~~~~~~~d~~sg~~v~~~~gRPd~~~vl~~~~~ 869 (912)
++ .|+++++++++.. ...+++..+++....... .+|.. + +-+-+.+.+.+.
T Consensus 297 d~-ly~~El~~~~~~~--~~~~~~~a~SR~~~~~k~------yVq~~--------------l-----~~~~~~v~~~l~- 347 (406)
T cd06202 297 DD-IYKEETEEAKNKG--VLTEVYTALSREPGKPKT------YVQDL--------------L-----KEQAESVYDALV- 347 (406)
T ss_pred cc-chHHHHHHHHHcC--CCceEEEEEcCCCCCCCe------ehhhH--------------H-----HHhHHHHHHHHH-
Confidence 65 6889898887542 244566666653110000 00000 0 000111111111
Q ss_pred hCCCCeEEEEEeCChHHHHHHHHHHHhhcc
Q 002525 870 HHPDSRIGVFYCGAPALTKELRQLASDFSH 899 (912)
Q Consensus 870 ~~~~~~v~V~~CGP~~m~~~vr~~~~~~~~ 899 (912)
.....||+|||++|+++|+++..+...
T Consensus 348 ---~~~~~iYvCG~~~M~~~V~~~L~~i~~ 374 (406)
T cd06202 348 ---REGGHIYVCGDVTMAEDVSQTIQRILA 374 (406)
T ss_pred ---hCCCEEEEeCCCchHHHHHHHHHHHHH
Confidence 123579999999999999988766543
No 90
>PF00175 NAD_binding_1: Oxidoreductase NAD-binding domain ; InterPro: IPR001433 Bacterial ferredoxin-NADP+ reductase may be bound to the thylakoid membrane or anchored to the thylakoid-bound phycobilisomes. Chloroplast ferredoxin-NADP+ reductase (1.18.1.2 from EC) may play a key role in regulating the relative amounts of cyclic and non-cyclic electron flow to meet the demands of the plant for ATP and reducing power. It is involved in the final step in the linear photosynthetic electron transport chain and has also been implicated in cyclic electron flow around photosystem I where its role would be to return electrons from ferredoxin to the cytochrome B-F complex. This domain is present in a variety of proteins that include, bacterial flavohemoprotein, mammalian NADH-cytochrome b5 reductase, eukaryotic NADPH-cytochrome P450 reductase, nitrate reductase from plants, nitric-oxide synthase, bacterial vanillate demethylase, as well as others.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1UMK_A 1CNE_A 2CND_A 1CNF_A 4FK8_A 4F7D_A 2XNJ_B 1FDR_A 1JB9_A 3LVB_A ....
Probab=99.33 E-value=6.2e-12 Score=117.25 Aligned_cols=107 Identities=18% Similarity=0.399 Sum_probs=71.7
Q ss_pred EEEcCcchhhHHHHHHHHHHhccccCccccccccccCCCCCCCCCcceEEEEEEeCCCCcHHHHHHHHHHHHhhcCCCcE
Q 002525 731 LVGLGIGATPMISIVKDIINNMKSEDNNLESGLTVNNNNKNSSFNTRKAYFYWVTREQGSFEWFKGIMNEVAEMDEKRVI 810 (912)
Q Consensus 731 lVagGiGITP~lsiL~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~l~W~~R~~~~~~wf~~~L~el~~~~~~~~i 810 (912)
|||||+||||++|++++++.+ . ..++++|+|++|+.+++ .|.+++.++++.... .+
T Consensus 1 lIagGtGIaP~~s~l~~~~~~-~---------------------~~~~v~l~~~~r~~~~~-~~~~~l~~~~~~~~~-~~ 56 (109)
T PF00175_consen 1 LIAGGTGIAPFLSMLRYLLER-N---------------------DNRKVTLFYGARTPEDL-LFRDELEALAQEYPN-RF 56 (109)
T ss_dssp EEEEGGGGHHHHHHHHHHHHH-T---------------------CTSEEEEEEEESSGGGS-TTHHHHHHHHHHSTT-CE
T ss_pred CeecceeHHHHHHHHHHHHHh-C---------------------CCCCEEEEEEEcccccc-cchhHHHHHHhhccc-cc
Confidence 799999999999999999876 1 14799999999999998 689999998876544 34
Q ss_pred EEEEeeccccCCCChhHHHHHHHhhhccccCCcccccCCccccccCCCCHHHHH-HHHHh-hCCCCeEEEEEeCChHHHH
Q 002525 811 ELHNYCTSVYEEGDARSALIAMLQSLHHAKNGVDVVSGTRVKSHFAKPNWRQVY-KRIAL-HHPDSRIGVFYCGAPALTK 888 (912)
Q Consensus 811 ~i~iy~T~~~~~~d~~s~l~~~~q~l~~~~~~~d~~sg~~v~~~~gRPd~~~vl-~~~~~-~~~~~~v~V~~CGP~~m~~ 888 (912)
.+. .+.....+. + .+.|| +.+.+ ++... .....+..||+|||++|++
T Consensus 57 ~~~--~~~~~~~~~-------------------~--------~~~g~--v~~~~~~~~~~~~~~~~~~~v~iCGp~~m~~ 105 (109)
T PF00175_consen 57 HVV--YVSSPDDGW-------------------D--------GFKGR--VTDLLLEDLLPEKIDPDDTHVYICGPPPMMK 105 (109)
T ss_dssp EEE--EETTTTSST-------------------T--------SEESS--HHHHHHHHHHHHHHCTTTEEEEEEEEHHHHH
T ss_pred ccc--ccccccccc-------------------C--------Cceee--hhHHHHHhhcccccCCCCCEEEEECCHHHHH
Confidence 333 221111000 0 01122 33333 33332 1223457899999999999
Q ss_pred HHHH
Q 002525 889 ELRQ 892 (912)
Q Consensus 889 ~vr~ 892 (912)
++++
T Consensus 106 ~v~~ 109 (109)
T PF00175_consen 106 AVRK 109 (109)
T ss_dssp HHHH
T ss_pred HhcC
Confidence 9875
No 91
>PRK10953 cysJ sulfite reductase subunit alpha; Provisional
Probab=99.31 E-value=2.5e-11 Score=145.18 Aligned_cols=137 Identities=10% Similarity=0.125 Sum_probs=96.1
Q ss_pred cccCccEEEEEeCCCCCCcccceeeeecCC--CCeEEEEEEe----------cCcchHHHHHHHhhccCCCCCCCCccch
Q 002525 630 KYKSGQYMFVNCAAVSPFEWHPFSITSSPG--DDYLSVHIRT----------LGDWTRQLKTVFSEVCQPAPAGKSGLLR 697 (912)
Q Consensus 630 ~~~pGQyv~l~~p~~s~~e~HPFTIaS~p~--~~~l~l~Ir~----------~G~~T~~L~~~~~~~~~~~~~g~sg~~~ 697 (912)
++.||||+-+..| .+.+||||+|+|. ++.+.+.|+. .|..|..|.+.+
T Consensus 371 ~~~~~q~l~ll~~----l~pR~YSIaSsp~~~~~~v~ltv~~v~~~~~g~~~~G~~S~~L~~~l---------------- 430 (600)
T PRK10953 371 QLDAEQLIGLLRP----LTPRLYSIASSQAEVENEVHITVGVVRYDIEGRARAGGASSFLADRL---------------- 430 (600)
T ss_pred CCCHHHHHHhCCC----CCCeeeecccCCCCCCCeEEEEEEEEEeecCCCCcCceEhhhhhhcC----------------
Confidence 6789999988765 3689999999995 3566666543 244555555433
Q ss_pred hhhccCCCCCCeEEEeCCCC-CCCCCCCCCCEEEEEEcCcchhhHHHHHHHHHHhccccCccccccccccCCCCCCCCCc
Q 002525 698 AERENNSRGFPKILIDGPYG-APAQDYKKYDVVLLVGLGIGATPMISIVKDIINNMKSEDNNLESGLTVNNNNKNSSFNT 776 (912)
Q Consensus 698 ~~~~~~~~~~~~v~IdGPYG-~~~~~~~~y~~vllVagGiGITP~lsiL~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 776 (912)
..+..+.|.||.| .+..+......++|||+|+|||||++++++..... ..
T Consensus 431 -------~~Gd~v~v~~~~~~~F~lp~~~~~piImIg~GTGIAPfrsflq~r~~~~----------------------~~ 481 (600)
T PRK10953 431 -------EEEGEVRVFIEHNDNFRLPANPETPVIMIGPGTGIAPFRAFMQQRAADG----------------------AP 481 (600)
T ss_pred -------CCCCEEEEEeccCCcccCCCCCCCCEEEEecCcCcHHHHHHHHHHHHcC----------------------CC
Confidence 2467899999886 44433333458999999999999999999876431 13
Q ss_pred ceEEEEEEeCC-CCcHHHHHHHHHHHHhhcCCCcEEEEEeecc
Q 002525 777 RKAYFYWVTRE-QGSFEWFKGIMNEVAEMDEKRVIELHNYCTS 818 (912)
Q Consensus 777 ~rv~l~W~~R~-~~~~~wf~~~L~el~~~~~~~~i~i~iy~T~ 818 (912)
.++.|+|++|+ ..++ .|+++++++.+... ..+++...++
T Consensus 482 ~~~~LffG~R~~~~D~-lY~~El~~~~~~g~--l~~l~~afSR 521 (600)
T PRK10953 482 GKNWLFFGNPHFTEDF-LYQVEWQRYVKEGL--LTRIDLAWSR 521 (600)
T ss_pred CCeEEEeeccCCccch-hHHHHHHHHHHcCC--cceEEEEECC
Confidence 57899999998 5665 78998988876422 2234444454
No 92
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=99.21 E-value=9.8e-11 Score=109.88 Aligned_cols=144 Identities=17% Similarity=0.280 Sum_probs=113.4
Q ss_pred ChHHHHHHHHHHcCCCC-----------CceeehhhhcccccCCCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHH
Q 002525 169 GWPAVEKRYNELAITTS-----------DGLLHCSMFGECIGMNKESKEFAGELFRGLCRKHNISGDSINKAQLKEFWDQ 237 (912)
Q Consensus 169 ~~~~l~~~F~~ld~~d~-----------dG~I~~~ef~~~lg~~~~~~~~~~~lf~~l~d~d~~~~G~Id~~EF~~~~~~ 237 (912)
+|-.|.++|..+.. +. +-.++.+...+.-.++ ...+-+++.++ +..|+. |.++|++|+.+.+.
T Consensus 26 dIlrl~~Rf~~L~P-~lVP~~~~~~~~~~v~vp~e~i~kMPELk--enpfk~ri~e~-FSeDG~--GnlsfddFlDmfSV 99 (189)
T KOG0038|consen 26 DILRLHKRFYELAP-HLVPTDMTGNRPPIVKVPFELIEKMPELK--ENPFKRRICEV-FSEDGR--GNLSFDDFLDMFSV 99 (189)
T ss_pred HHHHHHHHHHHhCc-ccccccccCCCCCceeecHHHHhhChhhh--cChHHHHHHHH-hccCCC--CcccHHHHHHHHHH
Confidence 67889999999873 11 1246666666665555 44567888884 556666 99999999999999
Q ss_pred hcCCC-hHHHHHHHHhHhCCCCCCcccHHHHHHHHHhhhccCcccchHHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHH
Q 002525 238 ISDES-FDSRLQTFFDMVDTDADGRITEEEVKEIISLSASANKLSNIQKQAEEYAAMIMEELDPDNAGYIMIHNLETLLL 316 (912)
Q Consensus 238 ~~~~~-~ee~L~~aF~~fDkd~dG~It~eEl~~il~~~~~~~~l~~~~~~~ee~~~~i~~e~D~d~dG~Is~~EF~~~l~ 316 (912)
++... .+-++..||+.||-|+|++|..++|...+... ..+.++. +..+-.++.+++|+|.|+||.+++.||+.|+.
T Consensus 100 ~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~l-Tr~eLs~--eEv~~i~ekvieEAD~DgDgkl~~~eFe~~i~ 176 (189)
T KOG0038|consen 100 FSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSL-TRDELSD--EEVELICEKVIEEADLDGDGKLSFAEFEHVIL 176 (189)
T ss_pred HHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHH-hhccCCH--HHHHHHHHHHHHHhcCCCCCcccHHHHHHHHH
Confidence 87665 46689999999999999999999999988643 2344543 44566788899999999999999999999999
Q ss_pred hCCCC
Q 002525 317 QAPNQ 321 (912)
Q Consensus 317 ~~p~~ 321 (912)
+.|..
T Consensus 177 raPDF 181 (189)
T KOG0038|consen 177 RAPDF 181 (189)
T ss_pred hCcch
Confidence 99964
No 93
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=99.14 E-value=2.5e-10 Score=124.21 Aligned_cols=133 Identities=23% Similarity=0.334 Sum_probs=109.4
Q ss_pred HHHHHHHHHHcCCCCCceeehhhhcccc---cCCCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhcCCChHHHH
Q 002525 171 PAVEKRYNELAITTSDGLLHCSMFGECI---GMNKESKEFAGELFRGLCRKHNISGDSINKAQLKEFWDQISDESFDSRL 247 (912)
Q Consensus 171 ~~l~~~F~~ld~~d~dG~I~~~ef~~~l---g~~~~~~~~~~~lf~~l~d~d~~~~G~Id~~EF~~~~~~~~~~~~ee~L 247 (912)
.+.+.+|+.+|. ++||.++..++.+++ +......+.+..+|+.+ |.|.+ |.+||+||..++. ..|.+|
T Consensus 14 ~r~~~lf~~lD~-~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~-d~~~d--g~vDy~eF~~Y~~-----~~E~~l 84 (463)
T KOG0036|consen 14 IRIRCLFKELDS-KNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAM-DANRD--GRVDYSEFKRYLD-----NKELEL 84 (463)
T ss_pred HHHHHHHHHhcc-CCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhc-ccCcC--CcccHHHHHHHHH-----HhHHHH
Confidence 467889999998 899999999999766 22212456688888854 34343 9999999999986 357789
Q ss_pred HHHHhHhCCCCCCcccHHHHHHHHHhhhccCcccchHHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhCCC
Q 002525 248 QTFFDMVDTDADGRITEEEVKEIISLSASANKLSNIQKQAEEYAAMIMEELDPDNAGYIMIHNLETLLLQAPN 320 (912)
Q Consensus 248 ~~aF~~fDkd~dG~It~eEl~~il~~~~~~~~l~~~~~~~ee~~~~i~~e~D~d~dG~Is~~EF~~~l~~~p~ 320 (912)
..+|+-.|.|+||.|..+|+.+.++..+ ..++ ++.++.+|+.+|+|+++.|+++||...++-+|.
T Consensus 85 ~~~F~~iD~~hdG~i~~~Ei~~~l~~~g--i~l~------de~~~k~~e~~d~~g~~~I~~~e~rd~~ll~p~ 149 (463)
T KOG0036|consen 85 YRIFQSIDLEHDGKIDPNEIWRYLKDLG--IQLS------DEKAAKFFEHMDKDGKATIDLEEWRDHLLLYPE 149 (463)
T ss_pred HHHHhhhccccCCccCHHHHHHHHHHhC--CccC------HHHHHHHHHHhccCCCeeeccHHHHhhhhcCCh
Confidence 9999999999999999999999997433 3344 456777999999999999999999999999994
No 94
>PF00970 FAD_binding_6: Oxidoreductase FAD-binding domain; InterPro: IPR008333 These sequences contain an oxidoreductase FAD-binding domain. To date, the 3D-structures of the flavoprotein domain of Zea mays (Maize) nitrate reductase [] and of pig NADH:cytochrome b5 reductase [] have been solved. The overall fold is similar to that of ferredoxin:NADP+ reductase []: the FAD-binding domain (N-terminal) has the topology of an anti-parallel beta-barrel, while the NAD(P)-binding domain (C-terminal) has the topology of a classical pyridine dinucleotide-binding fold (i.e. a central parallel beta-sheet flanked by 2 helices on each side).; PDB: 1JB9_A 3LVB_A 3LO8_A 1FRN_A 1FND_A 1BX1_A 1FNC_A 1FNB_A 1BX0_A 1FRQ_A ....
Probab=99.10 E-value=1.7e-10 Score=105.86 Aligned_cols=90 Identities=27% Similarity=0.471 Sum_probs=74.8
Q ss_pred eEEEEEEEecCCEEEEEEecCC---CccccCccEEEEEeCCCCCCcccceeeeecCCC-CeEEEEEEec--CcchHHHHH
Q 002525 606 VKILKVAVYPGNVLALHMSKPQ---GFKYKSGQYMFVNCAAVSPFEWHPFSITSSPGD-DYLSVHIRTL--GDWTRQLKT 679 (912)
Q Consensus 606 ~~i~~v~~~~~~v~~l~~~~p~---~~~~~pGQyv~l~~p~~s~~e~HPFTIaS~p~~-~~l~l~Ir~~--G~~T~~L~~ 679 (912)
++|++++.+++++..++|..|. .+.+.||||+.|+++..+...++||||+|.|.+ +.+.|+||.. |..|+.|.+
T Consensus 2 ~~v~~~~~~s~~~~~~~~~~~~~~~~~~~~pGQ~v~v~~~~~~~~~~R~yS~~s~~~~~~~~~~~ik~~~~G~~S~~L~~ 81 (99)
T PF00970_consen 2 AKVVEIEELSPDVKIFRFKLPDPDQKLDFKPGQFVSVRVPINGKQVSRPYSPASSPDDKGYLEFAIKRYPNGRVSRYLHQ 81 (99)
T ss_dssp EEEEEEEEESSSEEEEEEEESSTTTT-SSTTT-EEEEEEEETTEEEEEEEEBCSSTTSSSEEEEEEEECTTSHHHHHHHT
T ss_pred EEEEEEEEeCCCeEEEEEEECCCCcccccCcceEEEEEEccCCcceecceeEeeecCCCCcEEEEEEeccCCHHHHHHHh
Confidence 5789999999999999998774 356999999999999444567999999999975 5899999999 888998855
Q ss_pred HHhhccCCCCCCCCccchhhhccCCCCCCeEEEeCCCCCC
Q 002525 680 VFSEVCQPAPAGKSGLLRAERENNSRGFPKILIDGPYGAP 719 (912)
Q Consensus 680 ~~~~~~~~~~~g~sg~~~~~~~~~~~~~~~v~IdGPYG~~ 719 (912)
+ ..+..|.|.||+|.+
T Consensus 82 -l-----------------------~~Gd~v~i~gP~G~f 97 (99)
T PF00970_consen 82 -L-----------------------KPGDEVEIRGPYGNF 97 (99)
T ss_dssp -S-----------------------CTTSEEEEEEEESSE
T ss_pred -C-----------------------CCCCEEEEEEccccc
Confidence 3 257899999999975
No 95
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.08 E-value=3.4e-10 Score=95.78 Aligned_cols=66 Identities=26% Similarity=0.459 Sum_probs=56.5
Q ss_pred HHHHHHhHhCCCCCCcccHHHHHHHHHhhhccCcccchHHHHHHHHHHHhhhcCCCCCCcccHHHHHHHH
Q 002525 246 RLQTFFDMVDTDADGRITEEEVKEIISLSASANKLSNIQKQAEEYAAMIMEELDPDNAGYIMIHNLETLL 315 (912)
Q Consensus 246 ~L~~aF~~fDkd~dG~It~eEl~~il~~~~~~~~l~~~~~~~ee~~~~i~~e~D~d~dG~Is~~EF~~~l 315 (912)
+|+.+|+.+|+|+||+|+.+||+.++....... .++..++.+..+|+++|+|+||.|+++||..+|
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~----~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDM----SDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHS----THHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhcccc----cHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 589999999999999999999999997533211 145567889999999999999999999999886
No 96
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.08 E-value=1.1e-09 Score=102.77 Aligned_cols=137 Identities=14% Similarity=0.270 Sum_probs=105.5
Q ss_pred ChHHHHHHHHHHcCCCCCceeehhhhcccc---cCCCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhcCC---C
Q 002525 169 GWPAVEKRYNELAITTSDGLLHCSMFGECI---GMNKESKEFAGELFRGLCRKHNISGDSINKAQLKEFWDQISDE---S 242 (912)
Q Consensus 169 ~~~~l~~~F~~ld~~d~dG~I~~~ef~~~l---g~~~~~~~~~~~lf~~l~d~d~~~~G~Id~~EF~~~~~~~~~~---~ 242 (912)
...++++.|..+|. .+||.|+.++...|+ |.+| ++..+.+..... +.+..+...|+|++|+-.+.++.++ .
T Consensus 9 ~~~e~ke~F~lfD~-~gD~ki~~~q~gdvlRalG~nP-T~aeV~k~l~~~-~~~~~~~~rl~FE~fLpm~q~vaknk~q~ 85 (152)
T KOG0030|consen 9 QMEEFKEAFLLFDR-TGDGKISGSQVGDVLRALGQNP-TNAEVLKVLGQP-KRREMNVKRLDFEEFLPMYQQVAKNKDQG 85 (152)
T ss_pred hHHHHHHHHHHHhc-cCcccccHHHHHHHHHHhcCCC-cHHHHHHHHcCc-ccchhhhhhhhHHHHHHHHHHHHhccccC
Confidence 56889999999998 899999999999887 8887 655555554432 2221123789999999999887543 4
Q ss_pred hHHHHHHHHhHhCCCCCCcccHHHHHHHHHhhhccCcccchHHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHh
Q 002525 243 FDSRLQTFFDMVDTDADGRITEEEVKEIISLSASANKLSNIQKQAEEYAAMIMEELDPDNAGYIMIHNLETLLLQ 317 (912)
Q Consensus 243 ~ee~L~~aF~~fDkd~dG~It~eEl~~il~~~~~~~~l~~~~~~~ee~~~~i~~e~D~d~dG~Is~~EF~~~l~~ 317 (912)
.-+..-.-.+.||++++|.|...||+.+|...+ ++++ +++++.++.-. .|++|.|.|++|++.+..
T Consensus 86 t~edfvegLrvFDkeg~G~i~~aeLRhvLttlG--ekl~------eeEVe~Llag~-eD~nG~i~YE~fVk~i~~ 151 (152)
T KOG0030|consen 86 TYEDFVEGLRVFDKEGNGTIMGAELRHVLTTLG--EKLT------EEEVEELLAGQ-EDSNGCINYEAFVKHIMS 151 (152)
T ss_pred cHHHHHHHHHhhcccCCcceeHHHHHHHHHHHH--hhcc------HHHHHHHHccc-cccCCcCcHHHHHHHHhc
Confidence 456777789999999999999999999997544 4454 56667777664 378899999999987653
No 97
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=99.07 E-value=1.2e-09 Score=110.50 Aligned_cols=129 Identities=16% Similarity=0.310 Sum_probs=107.0
Q ss_pred HHHHHHHHHHcCCCCCceeehhhhccccc---CCCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhcCCChHHHH
Q 002525 171 PAVEKRYNELAITTSDGLLHCSMFGECIG---MNKESKEFAGELFRGLCRKHNISGDSINKAQLKEFWDQISDESFDSRL 247 (912)
Q Consensus 171 ~~l~~~F~~ld~~d~dG~I~~~ef~~~lg---~~~~~~~~~~~lf~~l~d~d~~~~G~Id~~EF~~~~~~~~~~~~ee~L 247 (912)
.++...|.+.|. |+.|.|+-+|+..+|. -.+-+.+.++-|.. +.|.+.. |+|+++||.+.|..+. .-
T Consensus 57 ~~~~~~f~~vD~-d~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~-mfd~~~~--G~i~f~EF~~Lw~~i~------~W 126 (221)
T KOG0037|consen 57 PQLAGWFQSVDR-DRSGRILAKELQQALSNGTWSPFSIETCRLMIS-MFDRDNS--GTIGFKEFKALWKYIN------QW 126 (221)
T ss_pred HHHHHHHHhhCc-cccccccHHHHHHHhhcCCCCCCCHHHHHHHHH-HhcCCCC--CccCHHHHHHHHHHHH------HH
Confidence 458889999999 9999999999999983 12224566777777 5666665 9999999999998764 58
Q ss_pred HHHHhHhCCCCCCcccHHHHHHHHHhhhccCcccchHHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHh
Q 002525 248 QTFFDMVDTDADGRITEEEVKEIISLSASANKLSNIQKQAEEYAAMIMEELDPDNAGYIMIHNLETLLLQ 317 (912)
Q Consensus 248 ~~aF~~fDkd~dG~It~eEl~~il~~~~~~~~l~~~~~~~ee~~~~i~~e~D~d~dG~Is~~EF~~~l~~ 317 (912)
+..|+-||+|++|.|+..||++.+...+ -.++ ++..+.|++.+|.-+.|.|.+++|.+.+-.
T Consensus 127 r~vF~~~D~D~SG~I~~sEL~~Al~~~G--y~Ls------pq~~~~lv~kyd~~~~g~i~FD~FI~ccv~ 188 (221)
T KOG0037|consen 127 RNVFRTYDRDRSGTIDSSELRQALTQLG--YRLS------PQFYNLLVRKYDRFGGGRIDFDDFIQCCVV 188 (221)
T ss_pred HHHHHhcccCCCCcccHHHHHHHHHHcC--cCCC------HHHHHHHHHHhccccCCceeHHHHHHHHHH
Confidence 9999999999999999999999997533 3344 567788999999888999999999998765
No 98
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.99 E-value=1.5e-09 Score=115.66 Aligned_cols=132 Identities=17% Similarity=0.198 Sum_probs=97.2
Q ss_pred hHHHHHHHHHHcCCCCCceeehhhhcccccCCCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhcCCCh-----H
Q 002525 170 WPAVEKRYNELAITTSDGLLHCSMFGECIGMNKESKEFAGELFRGLCRKHNISGDSINKAQLKEFWDQISDESF-----D 244 (912)
Q Consensus 170 ~~~l~~~F~~ld~~d~dG~I~~~ef~~~lg~~~~~~~~~~~lf~~l~d~d~~~~G~Id~~EF~~~~~~~~~~~~-----e 244 (912)
+.+=+++|+.-|. |+||.++++||..+|.-.......---+-..+.+.|.|++|+|+++||+.-+........ .
T Consensus 162 ~~rDe~rFk~AD~-d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~~~~~~~epeWv~ 240 (325)
T KOG4223|consen 162 IARDEERFKAADQ-DGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKNGDGKISLEEFIGDLYSHEGNEEEPEWVL 240 (325)
T ss_pred HHHHHHHHhhccc-CCCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccCCCCceeHHHHHhHHhhccCCCCCccccc
Confidence 4555778999998 999999999999998433111111112233455666666799999999998766433222 1
Q ss_pred HHHHHHHhHhCCCCCCcccHHHHHHHHHhhhccCcccchHHHHHHHHHHHhhhcCCCCCCcccHHH
Q 002525 245 SRLQTFFDMVDTDADGRITEEEVKEIISLSASANKLSNIQKQAEEYAAMIMEELDPDNAGYIMIHN 310 (912)
Q Consensus 245 e~L~~aF~~fDkd~dG~It~eEl~~il~~~~~~~~l~~~~~~~ee~~~~i~~e~D~d~dG~Is~~E 310 (912)
..-+.+|...|+|+||+++.+|++..|. +.. ...++.++..++.+.|.|+||++|++|
T Consensus 241 ~Ere~F~~~~DknkDG~L~~dEl~~WI~--P~~------~d~A~~EA~hL~~eaD~dkD~kLs~eE 298 (325)
T KOG4223|consen 241 TEREQFFEFRDKNKDGKLDGDELLDWIL--PSE------QDHAKAEARHLLHEADEDKDGKLSKEE 298 (325)
T ss_pred ccHHHHHHHhhcCCCCccCHHHHhcccC--CCC------ccHHHHHHHHHhhhhccCccccccHHH
Confidence 2356899999999999999999998773 111 234577899999999999999999985
No 99
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=98.99 E-value=3.9e-09 Score=129.30 Aligned_cols=117 Identities=18% Similarity=0.284 Sum_probs=93.2
Q ss_pred ceEEEEEEEecCCEEEEEEecCCC-ccccCccEEEEEeCCCC--CC-cccceeeeecCC-CCeEEEEEEecCcchHHHHH
Q 002525 605 PVKILKVAVYPGNVLALHMSKPQG-FKYKSGQYMFVNCAAVS--PF-EWHPFSITSSPG-DDYLSVHIRTLGDWTRQLKT 679 (912)
Q Consensus 605 ~~~i~~v~~~~~~v~~l~~~~p~~-~~~~pGQyv~l~~p~~s--~~-e~HPFTIaS~p~-~~~l~l~Ir~~G~~T~~L~~ 679 (912)
..+|+++..+.+++..+++..|.- -.++||||+.|++++.+ .+ +..||||++.+. .+.++|.++..|.-|+.|.+
T Consensus 792 ~~~Vv~~~~lap~i~~L~l~aP~iA~~~kPGQFVmL~~~~~g~~~l~~p~P~SI~~vD~e~g~It~i~rvVGkgT~~Ls~ 871 (1028)
T PRK06567 792 TSRVNKINILDDKTFELIIHSPLAAKNFKFGQFFRLQNYSEDAAKLIEPVALSPIDIDVEKGLISFIVFEVGKSTSLCKT 871 (1028)
T ss_pred ceEEEEEEEecCCEEEEEEeCcchhhcCCCCceEEEEeCCCCCccccCceeEEeeccCCCCCEEEEEEEEEChHHHHHhc
Confidence 357889999999999999988763 35889999999986533 22 556899998764 57899999999999998876
Q ss_pred HHhhccCCCCCCCCccchhhhccCCCCCCeEEEeCCCCCCCCCCCCCCEEEEEEcCcchhhHHHHHHHHH
Q 002525 680 VFSEVCQPAPAGKSGLLRAERENNSRGFPKILIDGPYGAPAQDYKKYDVVLLVGLGIGATPMISIVKDII 749 (912)
Q Consensus 680 ~~~~~~~~~~~g~sg~~~~~~~~~~~~~~~v~IdGPYG~~~~~~~~y~~vllVagGiGITP~lsiL~~l~ 749 (912)
+- .+..+.|.||+|.+.. ...++++|+||||+|++| +.+.+.
T Consensus 872 l~------------------------~Gd~v~v~GPLG~pF~-i~~~k~vLLVgGGVGiAp---Lak~Lk 913 (1028)
T PRK06567 872 LS------------------------ENEKVVLMGPTGSPLE-IPQNKKIVIVDFEVGNIG---LLKVLK 913 (1028)
T ss_pred CC------------------------CCCEEEEEcccCCCCC-CCCCCeEEEEEccccHHH---HHHHHH
Confidence 43 4677999999999864 334678999999999997 445553
No 100
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=98.94 E-value=5.9e-09 Score=103.53 Aligned_cols=109 Identities=19% Similarity=0.260 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhcCCChHHHHHHHHhHhCCCCCCcccHHHHHHHHHhhhccCcccchH
Q 002525 205 KEFAGELFRGLCRKHNISGDSINKAQLKEFWDQISDESFDSRLQTFFDMVDTDADGRITEEEVKEIISLSASANKLSNIQ 284 (912)
Q Consensus 205 ~~~~~~lf~~l~d~d~~~~G~Id~~EF~~~~~~~~~~~~ee~L~~aF~~fDkd~dG~It~eEl~~il~~~~~~~~l~~~~ 284 (912)
.....++|+ +.|.+++ |.|+-+|+..++..++...++++++.+++.+|.|+||.|+.+||..++...........
T Consensus 7 ~~el~~~F~-~fD~d~~--G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~-- 81 (151)
T KOG0027|consen 7 ILELKEAFQ-LFDKDGD--GKISVEELGAVLRSLGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEE-- 81 (151)
T ss_pred HHHHHHHHH-HHCCCCC--CcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhccccccc--
Confidence 345788888 5667776 99999999999999999999999999999999999999999999999974322111110
Q ss_pred HHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhCC
Q 002525 285 KQAEEYAAMIMEELDPDNAGYIMIHNLETLLLQAP 319 (912)
Q Consensus 285 ~~~ee~~~~i~~e~D~d~dG~Is~~EF~~~l~~~p 319 (912)
...+.+.++|+.+|.|+||+|+.+||+.+|...-
T Consensus 82 -~~~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg 115 (151)
T KOG0027|consen 82 -ASSEELKEAFRVFDKDGDGFISASELKKVLTSLG 115 (151)
T ss_pred -ccHHHHHHHHHHHccCCCCcCcHHHHHHHHHHhC
Confidence 1245788899999999999999999999999754
No 101
>KOG3378 consensus Globins and related hemoproteins [Energy production and conversion]
Probab=98.91 E-value=2.3e-09 Score=110.77 Aligned_cols=127 Identities=16% Similarity=0.153 Sum_probs=90.1
Q ss_pred cccceEEEEEEEecCCEEEEEEecCC----CccccCccEEEEEeC--CCCCC--cccceeeeecCCCCeEEEEEEec-Cc
Q 002525 602 SIEPVKILKVAVYPGNVLALHMSKPQ----GFKYKSGQYMFVNCA--AVSPF--EWHPFSITSSPGDDYLSVHIRTL-GD 672 (912)
Q Consensus 602 ~~~~~~i~~v~~~~~~v~~l~~~~p~----~~~~~pGQyv~l~~p--~~s~~--e~HPFTIaS~p~~~~l~l~Ir~~-G~ 672 (912)
++.+++|......+.||..+++.+-. .....|||||.++.. +.+.- .-.-+|..++...+.+.+.||.. ||
T Consensus 148 G~~~F~vT~~~~~sSDv~~~~~~PK~~~~~~~~~~PGQYvsV~~~~~~~~~k~~~~~~~S~~~~t~rN~~R~sVr~~A~G 227 (385)
T KOG3378|consen 148 GEVEFKVTELINESSDVKSVYLGPKDPAFRISHAHPGQYVSVLWEIPGLSHKTLREYSLSNRVDTCRNQFRISVRRVAGG 227 (385)
T ss_pred CccceeeeeeeccccceeEEEecCCCcceeeccCCCCceEEEeecCCccchhHHHHHHHhhhhhhhccceeEEEeehhch
Confidence 45678888888888999999996532 235789999999863 33321 12234555555567899999977 43
Q ss_pred -chHHHHHHHhhccCCCCCCCCccchhhhccCCCCCCeEEEeCCCCCCCCC---CCCCCEEEEEEcCcchhhHHHHHHHH
Q 002525 673 -WTRQLKTVFSEVCQPAPAGKSGLLRAERENNSRGFPKILIDGPYGAPAQD---YKKYDVVLLVGLGIGATPMISIVKDI 748 (912)
Q Consensus 673 -~T~~L~~~~~~~~~~~~~g~sg~~~~~~~~~~~~~~~v~IdGPYG~~~~~---~~~y~~vllVagGiGITP~lsiL~~l 748 (912)
.+..+++-+ ..++.+-+..|-|.+... ......+||.+|||||||+++|+...
T Consensus 228 ~VS~~~H~~~-----------------------KVGD~v~~S~PAG~F~~~r~~~~~N~PL~~~a~GiGiTPLi~iiE~~ 284 (385)
T KOG3378|consen 228 VVSNFVHDNL-----------------------KVGDIVGVSPPAGNFVYKRSEENVNRPLLCFAGGIGITPLIPIIETA 284 (385)
T ss_pred hhHHHhhccc-----------------------cccceeeccCCCccceeehhhhccCCceEEecCCcCccccHHHHHHH
Confidence 444444432 468889999999998532 22336789999999999999999987
Q ss_pred HHh
Q 002525 749 INN 751 (912)
Q Consensus 749 ~~~ 751 (912)
+..
T Consensus 285 ~~C 287 (385)
T KOG3378|consen 285 LLC 287 (385)
T ss_pred Hhc
Confidence 654
No 102
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=98.82 E-value=3.3e-08 Score=97.36 Aligned_cols=139 Identities=19% Similarity=0.303 Sum_probs=104.5
Q ss_pred cccchhhhHHHHHHHHhhhhcccCCCCcccccccchHHHHHhhhhhhhhhccCCCCCChHHHHHHHHHHcCCCCCceeeh
Q 002525 112 LFRNTSSHIKQVSQELKRFASLTRRPSSRRFDRTKSAAAHALKGLKFITTKTGAAGNGWPAVEKRYNELAITTSDGLLHC 191 (912)
Q Consensus 112 ~~~~~~~r~~~~~~~lk~~~~~~~~~~~~~~~r~~s~~~~al~~L~~i~~~~~~~~~~~~~l~~~F~~ld~~d~dG~I~~ 191 (912)
+...-..++++-++.+++ ...+.+ +++.+...+ |++-.+.+. +.+.++|..+|+ +.|.|+.
T Consensus 14 ~t~~qi~~lkeaF~l~D~-------d~~G~I--~~~el~~il---r~lg~~~s~-----~ei~~l~~~~d~--~~~~idf 74 (160)
T COG5126 14 LTEEQIQELKEAFQLFDR-------DSDGLI--DRNELGKIL---RSLGFNPSE-----AEINKLFEEIDA--GNETVDF 74 (160)
T ss_pred CCHHHHHHHHHHHHHhCc-------CCCCCC--cHHHHHHHH---HHcCCCCcH-----HHHHHHHHhccC--CCCccCH
Confidence 333445556665566655 456666 334444444 333333333 457889999886 7899999
Q ss_pred hhhcccccCC---CCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhcCCChHHHHHHHHhHhCCCCCCcccHHHHH
Q 002525 192 SMFGECIGMN---KESKEFAGELFRGLCRKHNISGDSINKAQLKEFWDQISDESFDSRLQTFFDMVDTDADGRITEEEVK 268 (912)
Q Consensus 192 ~ef~~~lg~~---~~~~~~~~~lf~~l~d~d~~~~G~Id~~EF~~~~~~~~~~~~ee~L~~aF~~fDkd~dG~It~eEl~ 268 (912)
.+|..+++.+ .+..+.+.+.|+ +.|+|++ |+|+..|++.++..+.....+++++.+++.+|+|+||+|+.+||.
T Consensus 75 ~~Fl~~ms~~~~~~~~~Eel~~aF~-~fD~d~d--G~Is~~eL~~vl~~lge~~~deev~~ll~~~d~d~dG~i~~~eF~ 151 (160)
T COG5126 75 PEFLTVMSVKLKRGDKEEELREAFK-LFDKDHD--GYISIGELRRVLKSLGERLSDEEVEKLLKEYDEDGDGEIDYEEFK 151 (160)
T ss_pred HHHHHHHHHHhccCCcHHHHHHHHH-HhCCCCC--ceecHHHHHHHHHhhcccCCHHHHHHHHHhcCCCCCceEeHHHHH
Confidence 9999998432 135677899999 5666666 999999999999999999999999999999999999999999999
Q ss_pred HHHH
Q 002525 269 EIIS 272 (912)
Q Consensus 269 ~il~ 272 (912)
+.+.
T Consensus 152 ~~~~ 155 (160)
T COG5126 152 KLIK 155 (160)
T ss_pred HHHh
Confidence 9875
No 103
>PLN02964 phosphatidylserine decarboxylase
Probab=98.78 E-value=1.7e-08 Score=119.72 Aligned_cols=100 Identities=12% Similarity=0.185 Sum_probs=82.6
Q ss_pred ChHHHHHHHHHHcCCCCCceeehhhhccccc-CCCCCHH--HHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhcCCChHH
Q 002525 169 GWPAVEKRYNELAITTSDGLLHCSMFGECIG-MNKESKE--FAGELFRGLCRKHNISGDSINKAQLKEFWDQISDESFDS 245 (912)
Q Consensus 169 ~~~~l~~~F~~ld~~d~dG~I~~~ef~~~lg-~~~~~~~--~~~~lf~~l~d~d~~~~G~Id~~EF~~~~~~~~~~~~ee 245 (912)
+++++++.|+.+|. |+||.+ ...+-..+| ..+...+ +++++|+. .|.|++ |.||++||+.++..+.....++
T Consensus 141 qi~elkeaF~lfD~-dgdG~i-Lg~ilrslG~~~pte~e~~fi~~mf~~-~D~Dgd--G~IdfdEFl~lL~~lg~~~seE 215 (644)
T PLN02964 141 EPESACESFDLLDP-SSSNKV-VGSIFVSCSIEDPVETERSFARRILAI-VDYDED--GQLSFSEFSDLIKAFGNLVAAN 215 (644)
T ss_pred HHHHHHHHHHHHCC-CCCCcC-HHHHHHHhCCCCCCHHHHHHHHHHHHH-hCCCCC--CeEcHHHHHHHHHHhccCCCHH
Confidence 57889999999998 999997 555555567 3542222 47899995 455555 9999999999999887777889
Q ss_pred HHHHHHhHhCCCCCCcccHHHHHHHHHh
Q 002525 246 RLQTFFDMVDTDADGRITEEEVKEIISL 273 (912)
Q Consensus 246 ~L~~aF~~fDkd~dG~It~eEl~~il~~ 273 (912)
+++.+|+.||+|+||+|+.+||++++..
T Consensus 216 EL~eaFk~fDkDgdG~Is~dEL~~vL~~ 243 (644)
T PLN02964 216 KKEELFKAADLNGDGVVTIDELAALLAL 243 (644)
T ss_pred HHHHHHHHhCCCCCCcCCHHHHHHHHHh
Confidence 9999999999999999999999999964
No 104
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=98.78 E-value=1.4e-08 Score=91.01 Aligned_cols=67 Identities=16% Similarity=0.222 Sum_probs=55.6
Q ss_pred HHHHHHHhHhCC-CCCCcccHHHHHHHHHhhhccCcccchHHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHh
Q 002525 245 SRLQTFFDMVDT-DADGRITEEEVKEIISLSASANKLSNIQKQAEEYAAMIMEELDPDNAGYIMIHNLETLLLQ 317 (912)
Q Consensus 245 e~L~~aF~~fDk-d~dG~It~eEl~~il~~~~~~~~l~~~~~~~ee~~~~i~~e~D~d~dG~Is~~EF~~~l~~ 317 (912)
..|..+|+.||+ |++|+|+.+||+.+|..... +.++. .+.++.+|+++|.|+||.|+|+||..+|..
T Consensus 8 ~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg-~~ls~-----~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~ 75 (89)
T cd05022 8 ETLVSNFHKASVKGGKESLTASEFQELLTQQLP-HLLKD-----VEGLEEKMKNLDVNQDSKLSFEEFWELIGE 75 (89)
T ss_pred HHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhh-hhccC-----HHHHHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 468999999999 99999999999999975221 22331 156888999999999999999999999975
No 105
>PTZ00183 centrin; Provisional
Probab=98.72 E-value=9.1e-08 Score=95.04 Aligned_cols=104 Identities=21% Similarity=0.255 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhcCCChHHHHHHHHhHhCCCCCCcccHHHHHHHHHhhhccCcccchH
Q 002525 205 KEFAGELFRGLCRKHNISGDSINKAQLKEFWDQISDESFDSRLQTFFDMVDTDADGRITEEEVKEIISLSASANKLSNIQ 284 (912)
Q Consensus 205 ~~~~~~lf~~l~d~d~~~~G~Id~~EF~~~~~~~~~~~~ee~L~~aF~~fDkd~dG~It~eEl~~il~~~~~~~~l~~~~ 284 (912)
...+.++|.. .|.+++ |.|+++||..++..+......+.++.+|..+|.|++|.|+.+||..++..... ...
T Consensus 16 ~~~~~~~F~~-~D~~~~--G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~-~~~---- 87 (158)
T PTZ00183 16 KKEIREAFDL-FDTDGS--GTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLG-ERD---- 87 (158)
T ss_pred HHHHHHHHHH-hCCCCC--CcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhc-CCC----
Confidence 3446777874 455554 99999999999988765567788999999999999999999999988763221 111
Q ss_pred HHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhC
Q 002525 285 KQAEEYAAMIMEELDPDNAGYIMIHNLETLLLQA 318 (912)
Q Consensus 285 ~~~ee~~~~i~~e~D~d~dG~Is~~EF~~~l~~~ 318 (912)
.++.+..+|+.+|.|++|+|+.+||..++...
T Consensus 88 --~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~ 119 (158)
T PTZ00183 88 --PREEILKAFRLFDDDKTGKISLKNLKRVAKEL 119 (158)
T ss_pred --cHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHh
Confidence 13557789999999999999999999999863
No 106
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=98.71 E-value=3.8e-08 Score=89.42 Aligned_cols=70 Identities=19% Similarity=0.333 Sum_probs=54.0
Q ss_pred HHHHHHHhHhC-CCCCC-cccHHHHHHHHHhhhccCcccchHHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHh
Q 002525 245 SRLQTFFDMVD-TDADG-RITEEEVKEIISLSASANKLSNIQKQAEEYAAMIMEELDPDNAGYIMIHNLETLLLQ 317 (912)
Q Consensus 245 e~L~~aF~~fD-kd~dG-~It~eEl~~il~~~~~~~~l~~~~~~~ee~~~~i~~e~D~d~dG~Is~~EF~~~l~~ 317 (912)
..+..+|+.|| +|+|| +||.+||++++...... .+.. ...++.+++||+++|.|+||.|+|+||..+|..
T Consensus 10 ~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~-~~~~--~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~ 81 (93)
T cd05026 10 DTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTD-FLSS--QKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAA 81 (93)
T ss_pred HHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHH-hccc--ccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHH
Confidence 35788899999 89999 59999999999642111 0110 001457888999999999999999999999975
No 107
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=98.69 E-value=1.2e-07 Score=91.41 Aligned_cols=103 Identities=19% Similarity=0.271 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhcCCChHHHHHHHHhHhCCCCCCcccHHHHHHHHHhhhccCcccchHH
Q 002525 206 EFAGELFRGLCRKHNISGDSINKAQLKEFWDQISDESFDSRLQTFFDMVDTDADGRITEEEVKEIISLSASANKLSNIQK 285 (912)
Q Consensus 206 ~~~~~lf~~l~d~d~~~~G~Id~~EF~~~~~~~~~~~~ee~L~~aF~~fDkd~dG~It~eEl~~il~~~~~~~~l~~~~~ 285 (912)
..+++.|+ +++.++. |+||++||..++..++-...++.+.++..-+|+++.|.|++++|+.++........ +
T Consensus 33 q~i~e~f~-lfd~~~~--g~iD~~EL~vAmralGFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~d-t---- 104 (172)
T KOG0028|consen 33 QEIKEAFE-LFDPDMA--GKIDVEELKVAMRALGFEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVKLGERD-T---- 104 (172)
T ss_pred hhHHHHHH-hhccCCC--CcccHHHHHHHHHHcCCCcchHHHHHHHHhhhhccCceechHHHHHHHHHHHhccC-c----
Confidence 44677777 5556555 99999999999999888888999999999999999999999999999864322211 1
Q ss_pred HHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhC
Q 002525 286 QAEEYAAMIMEELDPDNAGYIMIHNLETLLLQA 318 (912)
Q Consensus 286 ~~ee~~~~i~~e~D~d~dG~Is~~EF~~~l~~~ 318 (912)
.+.+..+|+++|.|++|.||+.+|+.++..-
T Consensus 105 --~eEi~~afrl~D~D~~Gkis~~~lkrvakeL 135 (172)
T KOG0028|consen 105 --KEEIKKAFRLFDDDKTGKISQRNLKRVAKEL 135 (172)
T ss_pred --HHHHHHHHHcccccCCCCcCHHHHHHHHHHh
Confidence 5667889999999999999999999999874
No 108
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=98.68 E-value=5.8e-08 Score=87.12 Aligned_cols=67 Identities=21% Similarity=0.316 Sum_probs=54.1
Q ss_pred HHHHHHHhHhC-CCCCC-cccHHHHHHHHHhhh---ccCcccchHHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHh
Q 002525 245 SRLQTFFDMVD-TDADG-RITEEEVKEIISLSA---SANKLSNIQKQAEEYAAMIMEELDPDNAGYIMIHNLETLLLQ 317 (912)
Q Consensus 245 e~L~~aF~~fD-kd~dG-~It~eEl~~il~~~~---~~~~l~~~~~~~ee~~~~i~~e~D~d~dG~Is~~EF~~~l~~ 317 (912)
..+..+|+.|| +|+|| +|+.+||+.+|.... .+...+ ++.++.+|+++|.|+||.|+|+||..++..
T Consensus 8 ~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~------~~~v~~~i~~~D~n~dG~v~f~eF~~li~~ 79 (88)
T cd05027 8 VALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKE------QEVVDKVMETLDSDGDGECDFQEFMAFVAM 79 (88)
T ss_pred HHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCC------HHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 36899999998 89999 699999999997511 011111 456888999999999999999999998865
No 109
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.63 E-value=1.1e-07 Score=101.78 Aligned_cols=142 Identities=19% Similarity=0.146 Sum_probs=100.8
Q ss_pred ChHHHHHHHHHHcCCCCCceeehhhhcccccCCCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhc-------CC
Q 002525 169 GWPAVEKRYNELAITTSDGLLHCSMFGECIGMNKESKEFAGELFRGLCRKHNISGDSINKAQLKEFWDQIS-------DE 241 (912)
Q Consensus 169 ~~~~l~~~F~~ld~~d~dG~I~~~ef~~~lg~~~~~~~~~~~lf~~l~d~d~~~~G~Id~~EF~~~~~~~~-------~~ 241 (912)
.-..|.++|.++|. ++||.|+.+|+...+... ......++.-+.+...|.+.+|.|+++|++..+.... +.
T Consensus 75 ~~~rl~~l~~~iD~-~~Dgfv~~~El~~wi~~s-~k~~v~~~~~~~~~~~d~~~Dg~i~~eey~~~~~~~~~~~~~~~d~ 152 (325)
T KOG4223|consen 75 SQERLGKLVPKIDS-DSDGFVTESELKAWIMQS-QKKYVVEEAARRWDEYDKNKDGFITWEEYLPQTYGRVDLPDEFPDE 152 (325)
T ss_pred hHHHHHHHHhhhcC-CCCCceeHHHHHHHHHHH-HHHHHHHHHHHHHHHhccCccceeeHHHhhhhhhhcccCccccccc
Confidence 34679999999998 999999999999987433 1222222222333333444559999999999887531 11
Q ss_pred C---hHH----HHHHHHhHhCCCCCCcccHHHHHHHHHhhhccCcccchHHHH-HHHHHHHhhhcCCCCCCcccHHHHHH
Q 002525 242 S---FDS----RLQTFFDMVDTDADGRITEEEVKEIISLSASANKLSNIQKQA-EEYAAMIMEELDPDNAGYIMIHNLET 313 (912)
Q Consensus 242 ~---~ee----~L~~aF~~fDkd~dG~It~eEl~~il~~~~~~~~l~~~~~~~-ee~~~~i~~e~D~d~dG~Is~~EF~~ 313 (912)
. ... +=+.-|+.-|.|+||.+|.+||-.++- +.. . +.+ +=.+.+-|++.|+|+||+|+++||..
T Consensus 153 e~~~~~~km~~rDe~rFk~AD~d~dg~lt~EEF~aFLH--PEe--~----p~M~~iVi~Etl~d~Dkn~DG~I~~eEfig 224 (325)
T KOG4223|consen 153 EDNEEYKKMIARDEERFKAADQDGDGSLTLEEFTAFLH--PEE--H----PHMKDIVIAETLEDIDKNGDGKISLEEFIG 224 (325)
T ss_pred hhcHHHHHHHHHHHHHHhhcccCCCCcccHHHHHhccC--hhh--c----chHHHHHHHHHHhhcccCCCCceeHHHHHh
Confidence 1 111 235679999999999999999998873 111 1 122 33577789999999999999999999
Q ss_pred HHHhCCC
Q 002525 314 LLLQAPN 320 (912)
Q Consensus 314 ~l~~~p~ 320 (912)
=|-.++.
T Consensus 225 d~~~~~~ 231 (325)
T KOG4223|consen 225 DLYSHEG 231 (325)
T ss_pred HHhhccC
Confidence 8887764
No 110
>PTZ00184 calmodulin; Provisional
Probab=98.63 E-value=3.9e-07 Score=89.33 Aligned_cols=103 Identities=19% Similarity=0.275 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhcCCChHHHHHHHHhHhCCCCCCcccHHHHHHHHHhhhccCcccchHH
Q 002525 206 EFAGELFRGLCRKHNISGDSINKAQLKEFWDQISDESFDSRLQTFFDMVDTDADGRITEEEVKEIISLSASANKLSNIQK 285 (912)
Q Consensus 206 ~~~~~lf~~l~d~d~~~~G~Id~~EF~~~~~~~~~~~~ee~L~~aF~~fDkd~dG~It~eEl~~il~~~~~~~~l~~~~~ 285 (912)
+...+.|.. .|.+++ |.|+++||..++..++....++.++.+|+.+|.|++|.|+.+||..++....... .
T Consensus 11 ~~~~~~F~~-~D~~~~--G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~--~---- 81 (149)
T PTZ00184 11 AEFKEAFSL-FDKDGD--GTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKDT--D---- 81 (149)
T ss_pred HHHHHHHHH-HcCCCC--CcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCC--c----
Confidence 345677774 444444 9999999999998777666788999999999999999999999998886322111 1
Q ss_pred HHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhC
Q 002525 286 QAEEYAAMIMEELDPDNAGYIMIHNLETLLLQA 318 (912)
Q Consensus 286 ~~ee~~~~i~~e~D~d~dG~Is~~EF~~~l~~~ 318 (912)
.++.+..+|+.+|.|++|+|+.+||..+|...
T Consensus 82 -~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~ 113 (149)
T PTZ00184 82 -SEEEIKEAFKVFDRDGNGFISAAELRHVMTNL 113 (149)
T ss_pred -HHHHHHHHHHhhCCCCCCeEeHHHHHHHHHHH
Confidence 13456779999999999999999999999763
No 111
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=98.61 E-value=1.8e-07 Score=102.36 Aligned_cols=135 Identities=19% Similarity=0.296 Sum_probs=96.5
Q ss_pred HHHHHHHHHcCCCCCceeehhhhcccc----cCCCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHH--hcCC----
Q 002525 172 AVEKRYNELAITTSDGLLHCSMFGECI----GMNKESKEFAGELFRGLCRKHNISGDSINKAQLKEFWDQ--ISDE---- 241 (912)
Q Consensus 172 ~l~~~F~~ld~~d~dG~I~~~ef~~~l----g~~~~~~~~~~~lf~~l~d~d~~~~G~Id~~EF~~~~~~--~~~~---- 241 (912)
+|++.|+.+|. ++.|.|+......|+ |++- . -..+-..+...+. +|.+.|.+-+..+.. ....
T Consensus 465 dL~~eF~~~D~-~ksG~lsis~Wa~~mE~i~~L~L-P---Wr~L~~kla~~s~--d~~v~Y~~~~~~l~~e~~~~ea~~s 537 (631)
T KOG0377|consen 465 DLEDEFRKYDP-KKSGKLSISHWAKCMENITGLNL-P---WRLLRPKLANGSD--DGKVEYKSTLDNLDTEVILEEAGSS 537 (631)
T ss_pred HHHHHHHhcCh-hhcCeeeHHHHHHHHHHHhcCCC-c---HHHhhhhccCCCc--CcceehHhHHHHhhhhhHHHHHHhH
Confidence 38999999998 899999999999887 4431 1 2333333333333 388888877665432 1100
Q ss_pred ------ChHHHHHHHHhHhCCCCCCcccHHHHHHHHHhhhccCcccchHHHHHHHHHHHhhhcCCCCCCcccHHHHHHHH
Q 002525 242 ------SFDSRLQTFFDMVDTDADGRITEEEVKEIISLSASANKLSNIQKQAEEYAAMIMEELDPDNAGYIMIHNLETLL 315 (912)
Q Consensus 242 ------~~ee~L~~aF~~fDkd~dG~It~eEl~~il~~~~~~~~l~~~~~~~ee~~~~i~~e~D~d~dG~Is~~EF~~~l 315 (912)
...+.|+.+|+.+|+|++|.||.+||+...++..+-..... + ++++.++-+.+|.|+||.|++.||.+..
T Consensus 538 lvetLYr~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i-~---~~~i~~la~~mD~NkDG~IDlNEfLeAF 613 (631)
T KOG0377|consen 538 LVETLYRNKSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAI-S---DDEILELARSMDLNKDGKIDLNEFLEAF 613 (631)
T ss_pred HHHHHHhchhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCc-C---HHHHHHHHHhhccCCCCcccHHHHHHHH
Confidence 12456999999999999999999999999986333222111 1 4567778889999999999999999987
Q ss_pred Hh
Q 002525 316 LQ 317 (912)
Q Consensus 316 ~~ 317 (912)
+-
T Consensus 614 rl 615 (631)
T KOG0377|consen 614 RL 615 (631)
T ss_pred hh
Confidence 64
No 112
>KOG1158 consensus NADP/FAD dependent oxidoreductase [Energy production and conversion]
Probab=98.56 E-value=3.8e-07 Score=108.00 Aligned_cols=127 Identities=11% Similarity=0.248 Sum_probs=79.7
Q ss_pred CCEEEEEEcCcchhhHHHHHHHHHHhccccCccccccccccCCCCCCCCCcceEEEEEEeCCCCcHHHHHHHHHHHHhhc
Q 002525 726 YDVVLLVGLGIGATPMISIVKDIINNMKSEDNNLESGLTVNNNNKNSSFNTRKAYFYWVTREQGSFEWFKGIMNEVAEMD 805 (912)
Q Consensus 726 y~~vllVagGiGITP~lsiL~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~l~W~~R~~~~~~wf~~~L~el~~~~ 805 (912)
-..++|||.|+||+||.+++++.......+. ..... +.||++||+.++...|++++++..+..
T Consensus 491 ~~PiIMIGpGTGiAPFRgFlq~r~~~~~~~~----------------~~~~~-~~Lf~GcR~~~~d~LY~eE~~~~~~~~ 553 (645)
T KOG1158|consen 491 STPIIMIGPGTGIAPFRGFLQERLFLKQQGP----------------KFGGG-MWLFFGCRNSDEDYLYREEWEEYKKAG 553 (645)
T ss_pred CCcEEEEcCCCcchhhHHHHHHHHHhhhcCc----------------cCCcc-eEEEEeCCCchHHHHHHHHHHHHHhcC
Confidence 3589999999999999999999887755432 12344 899999999999878999888763322
Q ss_pred CCCcEEEEEeeccccCCCChhHHHHHHHhhhccccCCcccccCCccccccCCCCHHHHHHHHHhhCCCCeEEEEEeCChH
Q 002525 806 EKRVIELHNYCTSVYEEGDARSALIAMLQSLHHAKNGVDVVSGTRVKSHFAKPNWRQVYKRIALHHPDSRIGVFYCGAPA 885 (912)
Q Consensus 806 ~~~~i~i~iy~T~~~~~~d~~s~l~~~~q~l~~~~~~~d~~sg~~v~~~~gRPd~~~vl~~~~~~~~~~~v~V~~CGP~~ 885 (912)
...++..-.++... .... .+|. +. | ...+.+.++..+ ....+|+||+..
T Consensus 554 --~l~~l~~A~SReq~---~~k~---YVQd--------------~l-----~-e~~d~v~~~L~~---~~g~iYvCGd~~ 602 (645)
T KOG1158|consen 554 --ILTRLDVAFSREQT---PKKI---YVQD--------------RL-----R-EYADEVWELLKK---EGGHIYVCGDAK 602 (645)
T ss_pred --cchhheeeeeccCC---CCce---ehhh--------------HH-----H-HHHHHHHHHHhc---CCcEEEEecCCc
Confidence 23344444454321 0000 0000 00 0 011222222222 235899999998
Q ss_pred -HHHHHHHHHHhhccC
Q 002525 886 -LTKELRQLASDFSHK 900 (912)
Q Consensus 886 -m~~~vr~~~~~~~~~ 900 (912)
|+++|.++..+...+
T Consensus 603 ~Ma~dV~~~L~~i~~~ 618 (645)
T KOG1158|consen 603 GMAKDVQDALVRILAK 618 (645)
T ss_pred cchHHHHHHHHHHHHh
Confidence 999999988776543
No 113
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=98.51 E-value=2.6e-07 Score=83.78 Aligned_cols=70 Identities=17% Similarity=0.291 Sum_probs=54.9
Q ss_pred HHHHHHHHhHhC-CCCCCc-ccHHHHHHHHHh-hhccCcccchHHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHh
Q 002525 244 DSRLQTFFDMVD-TDADGR-ITEEEVKEIISL-SASANKLSNIQKQAEEYAAMIMEELDPDNAGYIMIHNLETLLLQ 317 (912)
Q Consensus 244 ee~L~~aF~~fD-kd~dG~-It~eEl~~il~~-~~~~~~l~~~~~~~ee~~~~i~~e~D~d~dG~Is~~EF~~~l~~ 317 (912)
.+.++.+|++|| +|++|+ |+.+||+.++.. .+...+... .++.++.+|+++|.|++|.|+|+||..+|..
T Consensus 8 ~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~----s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~ 80 (92)
T cd05025 8 METLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQK----DADAVDKIMKELDENGDGEVDFQEFVVLVAA 80 (92)
T ss_pred HHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCC----CHHHHHHHHHHHCCCCCCcCcHHHHHHHHHH
Confidence 467999999997 999995 999999999963 211000000 1456788999999999999999999999875
No 114
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.49 E-value=3.4e-07 Score=83.31 Aligned_cols=68 Identities=18% Similarity=0.275 Sum_probs=54.8
Q ss_pred HHHHHHHHhHhCC-CC-CCcccHHHHHHHHHh-hhc--cCcccchHHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHh
Q 002525 244 DSRLQTFFDMVDT-DA-DGRITEEEVKEIISL-SAS--ANKLSNIQKQAEEYAAMIMEELDPDNAGYIMIHNLETLLLQ 317 (912)
Q Consensus 244 ee~L~~aF~~fDk-d~-dG~It~eEl~~il~~-~~~--~~~l~~~~~~~ee~~~~i~~e~D~d~dG~Is~~EF~~~l~~ 317 (912)
...+..+|+.||. |+ ||+|+.+||+.++.. .+. ....+ ++.+..+|+++|.|+||.|+|+||..+|..
T Consensus 7 ~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s------~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~ 79 (94)
T cd05031 7 MESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKD------PMAVDKIMKDLDQNRDGKVNFEEFVSLVAG 79 (94)
T ss_pred HHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhcccc------HHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 3568999999997 97 799999999999974 211 11112 456788999999999999999999999875
No 115
>COG0369 CysJ Sulfite reductase, alpha subunit (flavoprotein) [Inorganic ion transport and metabolism]
Probab=98.48 E-value=3.2e-06 Score=100.41 Aligned_cols=176 Identities=17% Similarity=0.203 Sum_probs=107.7
Q ss_pred CcccceeeeecCCC--CeEEEEEEec----------CcchHHHHHHHhhccCCCCCCCCccchhhhccCCCCCCeEEEeC
Q 002525 647 FEWHPFSITSSPGD--DYLSVHIRTL----------GDWTRQLKTVFSEVCQPAPAGKSGLLRAERENNSRGFPKILIDG 714 (912)
Q Consensus 647 ~e~HPFTIaS~p~~--~~l~l~Ir~~----------G~~T~~L~~~~~~~~~~~~~g~sg~~~~~~~~~~~~~~~v~IdG 714 (912)
...+=|||+|.|.. +.+++.|..+ |.-|..|.++.. .+..+.|..
T Consensus 371 lkPR~YSIsSs~~~~~~~vhltV~vV~y~~~~~~r~GvcS~~L~~~~~-----------------------~g~~i~v~v 427 (587)
T COG0369 371 LKPRLYSIASSPGVSPDEVHLTVGVVRYQAEGRERYGVCSGYLADLLE-----------------------EGDTIPVFV 427 (587)
T ss_pred CCCeeeEeccCCCCCCCeEEEEEEEEEeccCCCcccccchHHHHhhhc-----------------------CCCeEEEEe
Confidence 45678999999974 5566666554 333444544431 244566665
Q ss_pred CCC-CCCCCCCCCCEEEEEEcCcchhhHHHHHHHHHHhccccCccccccccccCCCCCCCCCcceEEEEEEeCCCCcHHH
Q 002525 715 PYG-APAQDYKKYDVVLLVGLGIGATPMISIVKDIINNMKSEDNNLESGLTVNNNNKNSSFNTRKAYFYWVTREQGSFEW 793 (912)
Q Consensus 715 PYG-~~~~~~~~y~~vllVagGiGITP~lsiL~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~l~W~~R~~~~~~w 793 (912)
.-+ .+..+-..-..++|||.|+||+||.++++.-..+.. ..++.|++.+|+..+=..
T Consensus 428 ~~n~nf~lp~~~~~PiIMIG~GTGIAPFRafvq~r~~~~~----------------------~gk~wLfFG~R~~~~DfL 485 (587)
T COG0369 428 QPNKNFRLPEDPETPIIMIGPGTGIAPFRAFVQERAANGA----------------------EGKNWLFFGCRHFTEDFL 485 (587)
T ss_pred ccCCccccCCCCCCceEEEcCCCCchhHHHHHHHHHhccc----------------------cCceEEEecCCCCccchh
Confidence 555 332222222689999999999999999998765521 237899999999543337
Q ss_pred HHHHHHHHHhhcCCCcEEEEEeeccccCCCChhHHHHHHHhhhccccCCcccccCCccccccCCCCHHHHHHHHHhhCCC
Q 002525 794 FKGIMNEVAEMDEKRVIELHNYCTSVYEEGDARSALIAMLQSLHHAKNGVDVVSGTRVKSHFAKPNWRQVYKRIALHHPD 873 (912)
Q Consensus 794 f~~~L~el~~~~~~~~i~i~iy~T~~~~~~d~~s~l~~~~q~l~~~~~~~d~~sg~~v~~~~gRPd~~~vl~~~~~~~~~ 873 (912)
|++++++..+.. ...++....++..++.- .+|. ++ |=+ .+.+.+...+
T Consensus 486 Y~~Ewe~~~~~G--~~~~l~~AfSRdq~~Ki-------YVQd--------------~l-----re~-~del~~~l~~--- 533 (587)
T COG0369 486 YQEEWEEYLKDG--VLTRLDLAFSRDQEEKI-------YVQD--------------RL-----REQ-ADELWEWLEE--- 533 (587)
T ss_pred hHHHHHHHHhcC--CceeEEEEEeecCCCCc-------cHHH--------------HH-----HHh-HHHHHHHHHC---
Confidence 888887755432 24666666666421110 0110 00 001 1222233322
Q ss_pred CeEEEEEeC-ChHHHHHHHHHHHhhccC
Q 002525 874 SRIGVFYCG-APALTKELRQLASDFSHK 900 (912)
Q Consensus 874 ~~v~V~~CG-P~~m~~~vr~~~~~~~~~ 900 (912)
+ ..+|+|| +..|.++|.++..+...+
T Consensus 534 g-a~~YVCGd~~~Ma~dV~~AL~~il~~ 560 (587)
T COG0369 534 G-AHIYVCGDAKGMAKDVEEALLDILAK 560 (587)
T ss_pred C-CEEEEeCCCccchHHHHHHHHHHHHh
Confidence 2 5899999 999999999998887653
No 116
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=98.48 E-value=6.9e-07 Score=97.93 Aligned_cols=172 Identities=15% Similarity=0.218 Sum_probs=120.5
Q ss_pred hhhhHHHHHHHHhhhhcccCCCCcccccccchHHHHHhhhhhhhhhccCCCCCChHHHHHHHHHHcCCCCCceeehhhhc
Q 002525 116 TSSHIKQVSQELKRFASLTRRPSSRRFDRTKSAAAHALKGLKFITTKTGAAGNGWPAVEKRYNELAITTSDGLLHCSMFG 195 (912)
Q Consensus 116 ~~~r~~~~~~~lk~~~~~~~~~~~~~~~r~~s~~~~al~~L~~i~~~~~~~~~~~~~l~~~F~~ld~~d~dG~I~~~ef~ 195 (912)
-..|++..+++|+. ++.+.+ +-....+++..|... .+. -+..+++|..+|. |.||.++++||+
T Consensus 12 r~~r~~~lf~~lD~-------~~~g~~--d~~~l~k~~~~l~~~---~~~----~~~~~~l~~~~d~-~~dg~vDy~eF~ 74 (463)
T KOG0036|consen 12 RDIRIRCLFKELDS-------KNDGQV--DLDQLEKGLEKLDHP---KPN----YEAAKMLFSAMDA-NRDGRVDYSEFK 74 (463)
T ss_pred HHHHHHHHHHHhcc-------CCCCce--eHHHHHHHHHhcCCC---CCc----hHHHHHHHHhccc-CcCCcccHHHHH
Confidence 34577888888776 344554 222334444444432 122 2457889999999 999999999999
Q ss_pred ccccCCCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhcCCChHHHHHHHHhHhCCCCCCcccHHHHHHHHHhhh
Q 002525 196 ECIGMNKESKEFAGELFRGLCRKHNISGDSINKAQLKEFWDQISDESFDSRLQTFFDMVDTDADGRITEEEVKEIISLSA 275 (912)
Q Consensus 196 ~~lg~~~~~~~~~~~lf~~l~d~d~~~~G~Id~~EF~~~~~~~~~~~~ee~L~~aF~~fDkd~dG~It~eEl~~il~~~~ 275 (912)
..+.-+ +....++|+.++.+.+ |.|+-+|.-.++..+..+..+++++.+|+..|+|+++.|+.+|+++.+.+.+
T Consensus 75 ~Y~~~~---E~~l~~~F~~iD~~hd---G~i~~~Ei~~~l~~~gi~l~de~~~k~~e~~d~~g~~~I~~~e~rd~~ll~p 148 (463)
T KOG0036|consen 75 RYLDNK---ELELYRIFQSIDLEHD---GKIDPNEIWRYLKDLGIQLSDEKAAKFFEHMDKDGKATIDLEEWRDHLLLYP 148 (463)
T ss_pred HHHHHh---HHHHHHHHhhhccccC---CccCHHHHHHHHHHhCCccCHHHHHHHHHHhccCCCeeeccHHHHhhhhcCC
Confidence 998644 3346788886644433 9999999999999999999999999999999999999999999999997533
Q ss_pred ccCcccchHHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHh
Q 002525 276 SANKLSNIQKQAEEYAAMIMEELDPDNAGYIMIHNLETLLLQ 317 (912)
Q Consensus 276 ~~~~l~~~~~~~ee~~~~i~~e~D~d~dG~Is~~EF~~~l~~ 317 (912)
.+.+++ +-..|.. +.-+|...|..|. |+|...-.+
T Consensus 149 ----~s~i~d-i~~~W~h-~~~idigE~~~iP-dg~s~~e~~ 183 (463)
T KOG0036|consen 149 ----ESDLED-IYDFWRH-VLLIDIGEDAVLP-DGDSKLEND 183 (463)
T ss_pred ----hhHHHH-HHHhhhh-heEEEccccccCC-cchHHHHhc
Confidence 111111 1112333 2246777888887 666655443
No 117
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=98.47 E-value=4.9e-07 Score=81.31 Aligned_cols=70 Identities=16% Similarity=0.271 Sum_probs=54.0
Q ss_pred HHHHHHHhH-hCCCCCC-cccHHHHHHHHHhhhccCcccchHHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHh
Q 002525 245 SRLQTFFDM-VDTDADG-RITEEEVKEIISLSASANKLSNIQKQAEEYAAMIMEELDPDNAGYIMIHNLETLLLQ 317 (912)
Q Consensus 245 e~L~~aF~~-fDkd~dG-~It~eEl~~il~~~~~~~~l~~~~~~~ee~~~~i~~e~D~d~dG~Is~~EF~~~l~~ 317 (912)
+.|..+|+. +|+|++| +||.+||+.++...... -+.. ...+..++++|+++|.|+||.|+|+||..+|..
T Consensus 9 ~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~-~~~~--~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~ 80 (89)
T cd05023 9 ESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELAS-FTKN--QKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGG 80 (89)
T ss_pred HHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhH-hhcC--CCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHH
Confidence 468889999 8899987 99999999999743210 0000 001456788999999999999999999999875
No 118
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.47 E-value=3.7e-07 Score=86.01 Aligned_cols=65 Identities=20% Similarity=0.307 Sum_probs=54.2
Q ss_pred hHHHHHHHHhHhCCCCCCcccHHHHHHHHHhhhccCcccchHHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhCCC
Q 002525 243 FDSRLQTFFDMVDTDADGRITEEEVKEIISLSASANKLSNIQKQAEEYAAMIMEELDPDNAGYIMIHNLETLLLQAPN 320 (912)
Q Consensus 243 ~ee~L~~aF~~fDkd~dG~It~eEl~~il~~~~~~~~l~~~~~~~ee~~~~i~~e~D~d~dG~Is~~EF~~~l~~~p~ 320 (912)
...++..+|..+|+|+||+|+.+||..+. +.. .+..+..+|+.+|.|+||+||++||...+ ..|.
T Consensus 46 ~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~-l~~-----------~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl-~~~~ 110 (116)
T cd00252 46 CKDPVGWMFNQLDGNYDGKLSHHELAPIR-LDP-----------NEHCIKPFFESCDLDKDGSISLDEWCYCF-IKED 110 (116)
T ss_pred HHHHHHHHHHHHCCCCCCcCCHHHHHHHH-ccc-----------hHHHHHHHHHHHCCCCCCCCCHHHHHHHH-hChh
Confidence 45789999999999999999999999876 111 14556779999999999999999999999 4443
No 119
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=98.41 E-value=7.7e-07 Score=98.97 Aligned_cols=133 Identities=17% Similarity=0.279 Sum_probs=104.6
Q ss_pred HHHHHHHcCCCCCceeehhhhcccccCCCCCHHHHHHHHHHHHhhCCC-CCCcccHHHHHHHHHHhcCCChHHHHHHHHh
Q 002525 174 EKRYNELAITTSDGLLHCSMFGECIGMNKESKEFAGELFRGLCRKHNI-SGDSINKAQLKEFWDQISDESFDSRLQTFFD 252 (912)
Q Consensus 174 ~~~F~~ld~~d~dG~I~~~ef~~~lg~~~~~~~~~~~lf~~l~d~d~~-~~G~Id~~EF~~~~~~~~~~~~ee~L~~aF~ 252 (912)
.-.|-.+|+ |.||.|+.++++..=.-. -+..+++++|+.+-+.... ..|+|||++|+-++....+.....-|+-.|+
T Consensus 281 y~kFweLD~-Dhd~lidk~~L~ry~d~t-lt~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e~k~t~~SleYwFr 358 (493)
T KOG2562|consen 281 YCKFWELDT-DHDGLIDKEDLKRYGDHT-LTERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEEDKDTPASLEYWFR 358 (493)
T ss_pred HHHHhhhcc-ccccccCHHHHHHHhccc-hhhHHHHHHHhhccccceeeecCcccHHHHHHHHHHhccCCCccchhhhee
Confidence 344899999 999999999998865333 2677899999943322221 2399999999999998888888888999999
Q ss_pred HhCCCCCCcccHHHHHHHHHh------hhccCcccchHHHHHHHHHHHhhhcCCCCCCcccHHHHHH
Q 002525 253 MVDTDADGRITEEEVKEIISL------SASANKLSNIQKQAEEYAAMIMEELDPDNAGYIMIHNLET 313 (912)
Q Consensus 253 ~fDkd~dG~It~eEl~~il~~------~~~~~~l~~~~~~~ee~~~~i~~e~D~d~dG~Is~~EF~~ 313 (912)
..|.|+||.++.+|++-+... ......+. .++..++|+..+-+.+.+.|++++|+.
T Consensus 359 clDld~~G~Lt~~el~~fyeeq~~rm~~~~~e~l~-----fed~l~qi~DMvkP~~~~kItLqDlk~ 420 (493)
T KOG2562|consen 359 CLDLDGDGILTLNELRYFYEEQLQRMECMGQEALP-----FEDALCQIRDMVKPEDENKITLQDLKG 420 (493)
T ss_pred eeeccCCCcccHHHHHHHHHHHHHHHHhcCCCccc-----HHHHHHHHHHHhCccCCCceeHHHHhh
Confidence 999999999999999877752 11112222 266788899999989999999999998
No 120
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=98.39 E-value=9.1e-07 Score=80.87 Aligned_cols=64 Identities=23% Similarity=0.328 Sum_probs=54.8
Q ss_pred HHHHHHHHhHhCCCCCCcccHHHHHHHHHhhhccCcccchHHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHh
Q 002525 244 DSRLQTFFDMVDTDADGRITEEEVKEIISLSASANKLSNIQKQAEEYAAMIMEELDPDNAGYIMIHNLETLLLQ 317 (912)
Q Consensus 244 ee~L~~aF~~fDkd~dG~It~eEl~~il~~~~~~~~l~~~~~~~ee~~~~i~~e~D~d~dG~Is~~EF~~~l~~ 317 (912)
.++++.+|+.||+|++|+|+.+||++++... +++ ++.+..||..+|.|++|.|+|+||..+|..
T Consensus 9 ~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~----~~~------~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~ 72 (96)
T smart00027 9 KAKYEQIFRSLDKNQDGTVTGAQAKPILLKS----GLP------QTLLAKIWNLADIDNDGELDKDEFALAMHL 72 (96)
T ss_pred HHHHHHHHHHhCCCCCCeEeHHHHHHHHHHc----CCC------HHHHHHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence 3579999999999999999999999999742 232 345777999999999999999999998874
No 121
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=98.38 E-value=8.4e-07 Score=74.84 Aligned_cols=61 Identities=23% Similarity=0.344 Sum_probs=51.9
Q ss_pred HHHHhHhCCCCCCcccHHHHHHHHHhhhccCcccchHHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhC
Q 002525 248 QTFFDMVDTDADGRITEEEVKEIISLSASANKLSNIQKQAEEYAAMIMEELDPDNAGYIMIHNLETLLLQA 318 (912)
Q Consensus 248 ~~aF~~fDkd~dG~It~eEl~~il~~~~~~~~l~~~~~~~ee~~~~i~~e~D~d~dG~Is~~EF~~~l~~~ 318 (912)
+.+|+.+|+|++|.|+.+|++.++... +.+ ++.+..+++++|.|++|.|+++||..+|...
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~----g~~------~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~ 62 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKS----GLP------RSVLAQIWDLADTDKDGKLDKEEFAIAMHLI 62 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHc----CCC------HHHHHHHHHHhcCCCCCcCCHHHHHHHHHHH
Confidence 578999999999999999999999642 122 4567789999999999999999999988753
No 122
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=98.37 E-value=1.1e-06 Score=78.85 Aligned_cols=65 Identities=23% Similarity=0.359 Sum_probs=53.2
Q ss_pred HHHHHHhHhCC-CC-CCcccHHHHHHHHHh--hhccCcccchHHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHh
Q 002525 246 RLQTFFDMVDT-DA-DGRITEEEVKEIISL--SASANKLSNIQKQAEEYAAMIMEELDPDNAGYIMIHNLETLLLQ 317 (912)
Q Consensus 246 ~L~~aF~~fDk-d~-dG~It~eEl~~il~~--~~~~~~l~~~~~~~ee~~~~i~~e~D~d~dG~Is~~EF~~~l~~ 317 (912)
.|-.+|..||. |+ +|+|+.+||++++.. .. ..+++ ++.+.++|+++|.|+||.|+|+||..+|..
T Consensus 11 ~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~l-g~k~t------~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~ 79 (88)
T cd05029 11 LLVAIFHKYSGREGDKNTLSKKELKELIQKELTI-GSKLQ------DAEIAKLMEDLDRNKDQEVNFQEYVTFLGA 79 (88)
T ss_pred HHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhc-CCCCC------HHHHHHHHHHhcCCCCCCCcHHHHHHHHHH
Confidence 47788999998 77 899999999999962 12 22333 467778999999999999999999998864
No 123
>PLN02964 phosphatidylserine decarboxylase
Probab=98.34 E-value=3.1e-06 Score=100.94 Aligned_cols=99 Identities=20% Similarity=0.345 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhc-CCChHHH---HHHHHhHhCCCCCCcccHHHHHHHHHhhhccCccc
Q 002525 206 EFAGELFRGLCRKHNISGDSINKAQLKEFWDQIS-DESFDSR---LQTFFDMVDTDADGRITEEEVKEIISLSASANKLS 281 (912)
Q Consensus 206 ~~~~~lf~~l~d~d~~~~G~Id~~EF~~~~~~~~-~~~~ee~---L~~aF~~fDkd~dG~It~eEl~~il~~~~~~~~l~ 281 (912)
+...+.|+ +.|.|++ |.| +..++..+. ....+++ ++.+|+.+|.|+||.|+.+||..+|.... ...+
T Consensus 143 ~elkeaF~-lfD~dgd--G~i----Lg~ilrslG~~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg--~~~s 213 (644)
T PLN02964 143 ESACESFD-LLDPSSS--NKV----VGSIFVSCSIEDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKAFG--NLVA 213 (644)
T ss_pred HHHHHHHH-HHCCCCC--CcC----HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhc--cCCC
Confidence 44666777 4455554 887 555555555 2344444 89999999999999999999999997422 1111
Q ss_pred chHHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhCC
Q 002525 282 NIQKQAEEYAAMIMEELDPDNAGYIMIHNLETLLLQAP 319 (912)
Q Consensus 282 ~~~~~~ee~~~~i~~e~D~d~dG~Is~~EF~~~l~~~p 319 (912)
++.+.++|+.+|.|+||+|+++||+.+|...+
T Consensus 214 ------eEEL~eaFk~fDkDgdG~Is~dEL~~vL~~~~ 245 (644)
T PLN02964 214 ------ANKKEELFKAADLNGDGVVTIDELAALLALQQ 245 (644)
T ss_pred ------HHHHHHHHHHhCCCCCCcCCHHHHHHHHHhcc
Confidence 55688899999999999999999999998865
No 124
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=98.32 E-value=3.5e-06 Score=86.05 Aligned_cols=104 Identities=20% Similarity=0.281 Sum_probs=81.8
Q ss_pred CHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhc-CCChHHHHHHHHhHhCCCCCCcccHHHHHHHHHhhhccCcccc
Q 002525 204 SKEFAGELFRGLCRKHNISGDSINKAQLKEFWDQIS-DESFDSRLQTFFDMVDTDADGRITEEEVKEIISLSASANKLSN 282 (912)
Q Consensus 204 ~~~~~~~lf~~l~d~d~~~~G~Id~~EF~~~~~~~~-~~~~ee~L~~aF~~fDkd~dG~It~eEl~~il~~~~~~~~l~~ 282 (912)
+...+++++..+-...-+ |.++-++|..+...+- .+..+.-.+.+|+.||+|+||.|+++||...+.....+
T Consensus 24 ~~~ei~~~Yr~Fk~~cP~--G~~~~~~F~~i~~~~fp~gd~~~y~~~vF~~fD~~~dg~i~F~Efi~als~~~rG----- 96 (193)
T KOG0044|consen 24 SKKEIQQWYRGFKNECPS--GRLTLEEFREIYASFFPDGDASKYAELVFRTFDKNKDGTIDFLEFICALSLTSRG----- 96 (193)
T ss_pred CHHHHHHHHHHhcccCCC--CccCHHHHHHHHHHHCCCCCHHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHcCC-----
Confidence 455678888876554444 9999999999998854 56777889999999999999999999976666532221
Q ss_pred hHHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHh
Q 002525 283 IQKQAEEYAAMIMEELDPDNAGYIMIHNLETLLLQ 317 (912)
Q Consensus 283 ~~~~~ee~~~~i~~e~D~d~dG~Is~~EF~~~l~~ 317 (912)
.+++-++-.|+-+|.|+||+|+++|+..++..
T Consensus 97 ---t~eekl~w~F~lyD~dgdG~It~~Eml~iv~~ 128 (193)
T KOG0044|consen 97 ---TLEEKLKWAFRLYDLDGDGYITKEEMLKIVQA 128 (193)
T ss_pred ---cHHHHhhhhheeecCCCCceEcHHHHHHHHHH
Confidence 12444455699999999999999999998875
No 125
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=98.30 E-value=1.6e-06 Score=92.13 Aligned_cols=140 Identities=11% Similarity=0.108 Sum_probs=109.2
Q ss_pred ChHHHHHHHHHHc---CCCCCceeehhhhcccccCCCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhcCCC-hH
Q 002525 169 GWPAVEKRYNELA---ITTSDGLLHCSMFGECIGMNKESKEFAGELFRGLCRKHNISGDSINKAQLKEFWDQISDES-FD 244 (912)
Q Consensus 169 ~~~~l~~~F~~ld---~~d~dG~I~~~ef~~~lg~~~~~~~~~~~lf~~l~d~d~~~~G~Id~~EF~~~~~~~~~~~-~e 244 (912)
.|.+|.+..+... ...+.+.|-..||...+... .+.....+|. ++|..++ |.+||.|.+..+..++... ..
T Consensus 221 ~~~gl~k~ld~y~~var~~kg~~igi~efa~~l~vp--vsd~l~~~f~-LFde~~t--g~~D~re~v~~lavlc~p~~t~ 295 (412)
T KOG4666|consen 221 PLVGLIKKLDGYVYVAREAKGPDIGIVEFAVNLRVP--VSDKLAPTFM-LFDEGTT--GNGDYRETVKTLAVLCGPPVTP 295 (412)
T ss_pred ChHHHHHHHhhHHHHHHhccCCCcceeEeeeeeecc--hhhhhhhhhh-eecCCCC--CcccHHHHhhhheeeeCCCCcH
Confidence 4666666644332 11368899999999999776 3345788898 6777666 9999999999988877654 56
Q ss_pred HHHHHHHhHhCCCCCCcccHHHHHHHHHhhhccCcccchHHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhCCCCC
Q 002525 245 SRLQTFFDMVDTDADGRITEEEVKEIISLSASANKLSNIQKQAEEYAAMIMEELDPDNAGYIMIHNLETLLLQAPNQS 322 (912)
Q Consensus 245 e~L~~aF~~fDkd~dG~It~eEl~~il~~~~~~~~l~~~~~~~ee~~~~i~~e~D~d~dG~Is~~EF~~~l~~~p~~~ 322 (912)
+-++.+|++||.+.||+++.++|.-+++....-..+. +-.+|.+.|...||+|+++||+.++..+|++.
T Consensus 296 ~iiq~afk~f~v~eDg~~ge~~ls~ilq~~lgv~~l~---------v~~lf~~i~q~d~~ki~~~~f~~fa~~~p~~a 364 (412)
T KOG4666|consen 296 VIIQYAFKRFSVAEDGISGEHILSLILQVVLGVEVLR---------VPVLFPSIEQKDDPKIYASNFRKFAATEPNLA 364 (412)
T ss_pred HHHHHHHHhcccccccccchHHHHHHHHHhcCcceee---------ccccchhhhcccCcceeHHHHHHHHHhCchhh
Confidence 7899999999999999999999998887543322222 23389999999999999999999999999874
No 126
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=98.30 E-value=1.9e-06 Score=77.39 Aligned_cols=71 Identities=20% Similarity=0.318 Sum_probs=55.1
Q ss_pred HHHHHHHHhHhCC--CCCCcccHHHHHHHHHhhhccCcccchHHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHh
Q 002525 244 DSRLQTFFDMVDT--DADGRITEEEVKEIISLSASANKLSNIQKQAEEYAAMIMEELDPDNAGYIMIHNLETLLLQ 317 (912)
Q Consensus 244 ee~L~~aF~~fDk--d~dG~It~eEl~~il~~~~~~~~l~~~~~~~ee~~~~i~~e~D~d~dG~Is~~EF~~~l~~ 317 (912)
.+.++.+|..||+ |++|+|+.+||+.++..... ...+. ...++.++.+|.++|.|++|.|+|+||..+|..
T Consensus 7 ~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g-~~~~~--~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~ 79 (88)
T cd00213 7 IETIIDVFHKYSGKEGDKDTLSKKELKELLETELP-NFLKN--QKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGK 79 (88)
T ss_pred HHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhh-hhccC--CCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHH
Confidence 3568999999999 89999999999999964211 11100 011456778999999999999999999999875
No 127
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=98.28 E-value=3.4e-06 Score=85.87 Aligned_cols=125 Identities=11% Similarity=0.114 Sum_probs=100.8
Q ss_pred hHHHHHHHHHHcCCCCCceeehhhhcccccCCCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhcCCChHHHHHH
Q 002525 170 WPAVEKRYNELAITTSDGLLHCSMFGECIGMNKESKEFAGELFRGLCRKHNISGDSINKAQLKEFWDQISDESFDSRLQT 249 (912)
Q Consensus 170 ~~~l~~~F~~ld~~d~dG~I~~~ef~~~lg~~~~~~~~~~~lf~~l~d~d~~~~G~Id~~EF~~~~~~~~~~~~ee~L~~ 249 (912)
++-.+-+-..+|. +++|+|..+||++....- ..-+.+|.. .|.|++ |+|+..||..++..+.-..+.+-++.
T Consensus 93 ~~TcrlmI~mfd~-~~~G~i~f~EF~~Lw~~i----~~Wr~vF~~-~D~D~S--G~I~~sEL~~Al~~~Gy~Lspq~~~~ 164 (221)
T KOG0037|consen 93 IETCRLMISMFDR-DNSGTIGFKEFKALWKYI----NQWRNVFRT-YDRDRS--GTIDSSELRQALTQLGYRLSPQFYNL 164 (221)
T ss_pred HHHHHHHHHHhcC-CCCCccCHHHHHHHHHHH----HHHHHHHHh-cccCCC--CcccHHHHHHHHHHcCcCCCHHHHHH
Confidence 4556667777777 899999999999887432 125788884 455554 99999999999999999999999999
Q ss_pred HHhHhCCCCCCcccHHHHHHHHHhhhccCcccchHHHHHHHHHHHhhhcCCCCCCc--ccHHHHHHHHH
Q 002525 250 FFDMVDTDADGRITEEEVKEIISLSASANKLSNIQKQAEEYAAMIMEELDPDNAGY--IMIHNLETLLL 316 (912)
Q Consensus 250 aF~~fDkd~dG~It~eEl~~il~~~~~~~~l~~~~~~~ee~~~~i~~e~D~d~dG~--Is~~EF~~~l~ 316 (912)
+++.||.-++|.|.++++.+.+... ...-+.|++.|++.+|. |+|++|..|..
T Consensus 165 lv~kyd~~~~g~i~FD~FI~ccv~L--------------~~lt~~Fr~~D~~q~G~i~~~y~dfl~~t~ 219 (221)
T KOG0037|consen 165 LVRKYDRFGGGRIDFDDFIQCCVVL--------------QRLTEAFRRRDTAQQGSITISYDDFLQMTM 219 (221)
T ss_pred HHHHhccccCCceeHHHHHHHHHHH--------------HHHHHHHHHhccccceeEEEeHHHHHHHhh
Confidence 9999999999999999999887521 11233799999999998 56899988753
No 128
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=98.25 E-value=1.8e-06 Score=72.94 Aligned_cols=61 Identities=26% Similarity=0.417 Sum_probs=43.3
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHHhcCC----ChHHHHHHHHhHhCCCCCCcccHHHHHHHH
Q 002525 208 AGELFRGLCRKHNISGDSINKAQLKEFWDQISDE----SFDSRLQTFFDMVDTDADGRITEEEVKEII 271 (912)
Q Consensus 208 ~~~lf~~l~d~d~~~~G~Id~~EF~~~~~~~~~~----~~ee~L~~aF~~fDkd~dG~It~eEl~~il 271 (912)
++++|+. .|.|++ |.|+.+||..++..+... ..++.++.+|+.+|+|+||.|+.+||.+++
T Consensus 2 l~~~F~~-~D~d~~--G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 2 LKEAFKK-FDKDGD--GYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHH-HSTTSS--SEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred HHHHHHH-HcCCcc--CCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 4566773 344444 777777777777766532 234567777999999999999999988764
No 129
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=98.19 E-value=4.1e-06 Score=68.31 Aligned_cols=61 Identities=31% Similarity=0.488 Sum_probs=51.1
Q ss_pred HHHHHhHhCCCCCCcccHHHHHHHHHhhhccCcccchHHHHHHHHHHHhhhcCCCCCCcccHHHHHHHH
Q 002525 247 LQTFFDMVDTDADGRITEEEVKEIISLSASANKLSNIQKQAEEYAAMIMEELDPDNAGYIMIHNLETLL 315 (912)
Q Consensus 247 L~~aF~~fDkd~dG~It~eEl~~il~~~~~~~~l~~~~~~~ee~~~~i~~e~D~d~dG~Is~~EF~~~l 315 (912)
++.+|+.+|.|++|.|+.+|+..++..... ..+ ++.+..+++.+|.|++|.|+++||..++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~--~~~------~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGE--GLS------EEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCC--CCC------HHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 678999999999999999999999974321 111 5567779999999999999999999875
No 130
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=98.09 E-value=7.4e-06 Score=66.28 Aligned_cols=53 Identities=32% Similarity=0.537 Sum_probs=42.6
Q ss_pred CCCcccHHHHHHHHHhhhccCcccchHHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHh
Q 002525 258 ADGRITEEEVKEIISLSASANKLSNIQKQAEEYAAMIMEELDPDNAGYIMIHNLETLLLQ 317 (912)
Q Consensus 258 ~dG~It~eEl~~il~~~~~~~~l~~~~~~~ee~~~~i~~e~D~d~dG~Is~~EF~~~l~~ 317 (912)
.+|+|+.+||+.+|...+. ..++ ++.++.+|..+|.|+||+|+|+||..+|..
T Consensus 1 ~~G~i~~~~~~~~l~~~g~-~~~s------~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGI-KDLS------EEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTS-SSSC------HHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCC-CCCC------HHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 4799999999999953221 1133 456888999999999999999999999864
No 131
>PRK05419 putative sulfite oxidase subunit YedZ; Reviewed
Probab=98.06 E-value=6.3e-05 Score=78.27 Aligned_cols=127 Identities=14% Similarity=0.085 Sum_probs=84.0
Q ss_pred ccCccchhHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCccCCCCCCccceeccccchhHHHHHHHHHHH
Q 002525 439 VPFDDNLNFHKVIAVGIGIGVILHGGAHLTCDFPRLLHATEEEYEPMKPYFGDEQPDNYWWFVKGVEGVTGIIMVVLMVI 518 (912)
Q Consensus 439 v~~d~~~~fHr~ia~~~~v~~~lH~i~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~g~tGii~~vl~~i 518 (912)
.+.++.+.+||++|..+++.+++|.+.++..+... .++.+ +++ ..+...-+.|.+++++++.
T Consensus 68 ~~~~~l~~~RR~LGl~af~~a~lH~~~y~~~~~~~-------~~~~~---~~~--------i~~~~~i~~G~ia~~lLl~ 129 (205)
T PRK05419 68 TGQPLLIRTRRLLGLWAFFYATLHLLSYLLLDLGL-------DWSLL---GKE--------IVKRPYITVGMAAFLILLP 129 (205)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-------cHHHH---HHH--------HHhchHHHHHHHHHHHHHH
Confidence 35578889999999999999999998776542110 01000 110 0111123568888888888
Q ss_pred HHHhhhhhhhhccCCCCCccccccccchhhhHHHHHHHHHHHHHHHhhhhhhcccccccchhhhhhHhhHHHHHHHHHHH
Q 002525 519 AFTLATPWFRRNKLNLPKPLKRLTGFNAFWYSHHLFIIVYTLLIVHGIKLYLTKKWYQKTTWMYLAVPMVLYACERLTRA 598 (912)
Q Consensus 519 ~~~~s~~~~Rr~~~~~~~~l~~~~~ye~F~~~H~l~~i~~vll~~H~~~~~~~~~w~~~~~w~yl~~~~~l~~~dr~~R~ 598 (912)
+.++|..+.||+. +| .|..+|.+..+++++.++|-.+.. .... .....|..+ ++++..-|+.+.
T Consensus 130 LaiTS~~~~~rrL-----------g~-~Wk~LH~l~Y~a~~L~~~H~~~~~-k~~~--~~~~~y~~~-~~~ll~~R~~~~ 193 (205)
T PRK05419 130 LALTSTRASQRRL-----------GK-RWQKLHRLVYLIAILAPLHYLWSV-KSDS--PEPLIYAAI-VAVLLALRLKKL 193 (205)
T ss_pred HHHHhhHHHHHHH-----------HH-HHHHHHHHHHHHHHHHHHHHHHHh-cccc--ccHHHHHHH-HHHHHHHHHHHH
Confidence 8999999988873 68 899999999998988899955432 2221 234556543 445555677766
Q ss_pred H
Q 002525 599 L 599 (912)
Q Consensus 599 ~ 599 (912)
.
T Consensus 194 ~ 194 (205)
T PRK05419 194 R 194 (205)
T ss_pred H
Confidence 5
No 132
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=98.05 E-value=2.1e-05 Score=87.07 Aligned_cols=131 Identities=15% Similarity=0.274 Sum_probs=96.0
Q ss_pred HHHHHHHHcCCCCCceeehhhhcccc---------cC------CCC---CHHHHHHHHHHHHhhCCCCCCcccHHHHHHH
Q 002525 173 VEKRYNELAITTSDGLLHCSMFGECI---------GM------NKE---SKEFAGELFRGLCRKHNISGDSINKAQLKEF 234 (912)
Q Consensus 173 l~~~F~~ld~~d~dG~I~~~ef~~~l---------g~------~~~---~~~~~~~lf~~l~d~d~~~~G~Id~~EF~~~ 234 (912)
++=.|+.+|. |+||.|+.+||.... |+ ... ..+....|-.-++-.|++ ++++++||+++
T Consensus 235 F~IAFKMFD~-dgnG~IdkeEF~~v~~li~sQ~~~g~~hrd~~tt~~s~~~~~nsaL~~yFFG~rg~--~kLs~deF~~F 311 (489)
T KOG2643|consen 235 FRIAFKMFDL-DGNGEIDKEEFETVQQLIRSQTSVGVRHRDHFTTGNSFKVEVNSALLTYFFGKRGN--GKLSIDEFLKF 311 (489)
T ss_pred ceeeeeeeec-CCCCcccHHHHHHHHHHHHhccccceecccCccccceehhhhhhhHHHHhhccCCC--ccccHHHHHHH
Confidence 4446889998 999999999997654 22 000 112223344446667777 99999999999
Q ss_pred HHHhcCCChHHHHHHHHhHhCCCCCCcccHHHHHHHHHhhhccCcccchHHHHHHHHHHHhhhcCCCCCCcccHHHHHHH
Q 002525 235 WDQISDESFDSRLQTFFDMVDTDADGRITEEEVKEIISLSASANKLSNIQKQAEEYAAMIMEELDPDNAGYIMIHNLETL 314 (912)
Q Consensus 235 ~~~~~~~~~ee~L~~aF~~fDkd~dG~It~eEl~~il~~~~~~~~l~~~~~~~ee~~~~i~~e~D~d~dG~Is~~EF~~~ 314 (912)
+..+ .+|-++.=|..+|+..+|.|+..+|.++|......+... -+.++...-++++.+ +-.||++||+..
T Consensus 312 ~e~L----q~Eil~lEF~~~~~~~~g~Ise~DFA~~lL~~a~~n~~~-----k~~~lkrvk~kf~~~-~~gISl~Ef~~F 381 (489)
T KOG2643|consen 312 QENL----QEEILELEFERFDKGDSGAISEVDFAELLLAYAGVNSKK-----KHKYLKRVKEKFKDD-GKGISLQEFKAF 381 (489)
T ss_pred HHHH----HHHHHHHHHHHhCcccccccCHHHHHHHHHHHcccchHh-----HHHHHHHHHHhccCC-CCCcCHHHHHHH
Confidence 9876 467778889999999999999999999886433323211 145777888888876 667999999987
Q ss_pred HH
Q 002525 315 LL 316 (912)
Q Consensus 315 l~ 316 (912)
-.
T Consensus 382 f~ 383 (489)
T KOG2643|consen 382 FR 383 (489)
T ss_pred HH
Confidence 65
No 133
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=97.97 E-value=1.6e-05 Score=64.29 Aligned_cols=50 Identities=18% Similarity=0.367 Sum_probs=44.9
Q ss_pred CCcccHHHHHHHHHHhcCC-ChHHHHHHHHhHhCCCCCCcccHHHHHHHHH
Q 002525 223 GDSINKAQLKEFWDQISDE-SFDSRLQTFFDMVDTDADGRITEEEVKEIIS 272 (912)
Q Consensus 223 ~G~Id~~EF~~~~~~~~~~-~~ee~L~~aF~~fDkd~dG~It~eEl~~il~ 272 (912)
+|.|+.+||..++..++.. .+++.++.+|..+|.|+||+|+.+||..++.
T Consensus 2 ~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~ 52 (54)
T PF13833_consen 2 DGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQ 52 (54)
T ss_dssp SSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHH
T ss_pred cCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Confidence 4999999999999766666 7788899999999999999999999998874
No 134
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=97.95 E-value=2.7e-05 Score=79.54 Aligned_cols=96 Identities=18% Similarity=0.295 Sum_probs=71.0
Q ss_pred HHHHHHHHcCCCCCce-eehhhhcccccC---CCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhcC-CCh----
Q 002525 173 VEKRYNELAITTSDGL-LHCSMFGECIGM---NKESKEFAGELFRGLCRKHNISGDSINKAQLKEFWDQISD-ESF---- 243 (912)
Q Consensus 173 l~~~F~~ld~~d~dG~-I~~~ef~~~lg~---~~~~~~~~~~lf~~l~d~d~~~~G~Id~~EF~~~~~~~~~-~~~---- 243 (912)
..++|+.++. +++|. |+.++|...+.. ....++-.+=.|+ +.|.+++ |.|+.+|+..++..+-. ...
T Consensus 68 ~~rI~~~f~~-~~~~~~v~F~~Fv~~ls~f~~~~~~~~Kl~faF~-vYD~~~~--G~I~reel~~iv~~~~~~~~~~~~e 143 (187)
T KOG0034|consen 68 ADRIIDRFDT-DGNGDPVDFEEFVRLLSVFSPKASKREKLRFAFR-VYDLDGD--GFISREELKQILRMMVGENDDMSDE 143 (187)
T ss_pred HHHHHHHHhc-cCCCCccCHHHHHHHHhhhcCCccHHHHHHHHHH-HhcCCCC--CcCcHHHHHHHHHHHHccCCcchHH
Confidence 3556666666 66777 999999998832 1012234666788 5566665 99999999999987532 222
Q ss_pred --HHHHHHHHhHhCCCCCCcccHHHHHHHHH
Q 002525 244 --DSRLQTFFDMVDTDADGRITEEEVKEIIS 272 (912)
Q Consensus 244 --ee~L~~aF~~fDkd~dG~It~eEl~~il~ 272 (912)
++-++..|..+|.|+||+|+++|+.+++.
T Consensus 144 ~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v~ 174 (187)
T KOG0034|consen 144 QLEDIVDKTFEEADTDGDGKISFEEFCKVVE 174 (187)
T ss_pred HHHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 34578889999999999999999999996
No 135
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=97.89 E-value=4.2e-05 Score=68.72 Aligned_cols=70 Identities=14% Similarity=0.305 Sum_probs=52.8
Q ss_pred HHHHHHHhHhCCC--CCCcccHHHHHHHHHhhhccCcccchHHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHh
Q 002525 245 SRLQTFFDMVDTD--ADGRITEEEVKEIISLSASANKLSNIQKQAEEYAAMIMEELDPDNAGYIMIHNLETLLLQ 317 (912)
Q Consensus 245 e~L~~aF~~fDkd--~dG~It~eEl~~il~~~~~~~~l~~~~~~~ee~~~~i~~e~D~d~dG~Is~~EF~~~l~~ 317 (912)
+.+-..|..|+.+ .+|+|+.+||+.++...... .++. ...++.++.+|+++|.|+||.|+|+||..+|..
T Consensus 8 ~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~-~~t~--~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~ 79 (88)
T cd05030 8 ETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPN-FLKK--EKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIK 79 (88)
T ss_pred HHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhH-hhcc--CCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHH
Confidence 3577789999865 48999999999999632211 1110 011567888999999999999999999999875
No 136
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=97.88 E-value=1.4e-05 Score=56.04 Aligned_cols=27 Identities=41% Similarity=0.637 Sum_probs=25.0
Q ss_pred HHHHHHhHhCCCCCCcccHHHHHHHHH
Q 002525 246 RLQTFFDMVDTDADGRITEEEVKEIIS 272 (912)
Q Consensus 246 ~L~~aF~~fDkd~dG~It~eEl~~il~ 272 (912)
+++.+|+.||+|+||+|+.+||+.+++
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~ 27 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMK 27 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHH
Confidence 478999999999999999999999885
No 137
>PF14658 EF-hand_9: EF-hand domain
Probab=97.83 E-value=4.6e-05 Score=63.66 Aligned_cols=62 Identities=21% Similarity=0.386 Sum_probs=52.5
Q ss_pred HHHhHhCCCCCCcccHHHHHHHHHhhhccCcccchHHHHHHHHHHHhhhcCCCCC-CcccHHHHHHHHHh
Q 002525 249 TFFDMVDTDADGRITEEEVKEIISLSASANKLSNIQKQAEEYAAMIMEELDPDNA-GYIMIHNLETLLLQ 317 (912)
Q Consensus 249 ~aF~~fDkd~dG~It~eEl~~il~~~~~~~~l~~~~~~~ee~~~~i~~e~D~d~d-G~Is~~EF~~~l~~ 317 (912)
.+|++||.++.|.|...+|..+|+..+..+. . |..+..+..++|+++. |.|+++.|...|++
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p-~------e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSP-E------ESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCC-c------HHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 4799999999999999999999986554221 1 4567779999999998 99999999999985
No 138
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=97.79 E-value=8.2e-05 Score=67.59 Aligned_cols=64 Identities=16% Similarity=0.247 Sum_probs=50.4
Q ss_pred HHHHHHHHHhhCCCCCC-cccHHHHHHHHHHh-----cCCChHHHHHHHHhHhCCCCCCcccHHHHHHHHHh
Q 002525 208 AGELFRGLCRKHNISGD-SINKAQLKEFWDQI-----SDESFDSRLQTFFDMVDTDADGRITEEEVKEIISL 273 (912)
Q Consensus 208 ~~~lf~~l~d~d~~~~G-~Id~~EF~~~~~~~-----~~~~~ee~L~~aF~~fDkd~dG~It~eEl~~il~~ 273 (912)
+.++|+.+++.|++ | +|+.+||..++... .....++.+..+++.+|.|+||.|+++||..++..
T Consensus 12 ~~~~F~~~dd~dgd--g~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~ 81 (93)
T cd05026 12 LIRIFHNYSGKEGD--RYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAA 81 (93)
T ss_pred HHHHHHHHHccCCC--CCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHH
Confidence 56678876666665 6 59999999988652 33346678999999999999999999999998863
No 139
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=97.77 E-value=9.1e-05 Score=66.51 Aligned_cols=63 Identities=16% Similarity=0.331 Sum_probs=48.7
Q ss_pred HHHHHHHHHhhCCCCCC-cccHHHHHHHHHH-----hcCCChHHHHHHHHhHhCCCCCCcccHHHHHHHHH
Q 002525 208 AGELFRGLCRKHNISGD-SINKAQLKEFWDQ-----ISDESFDSRLQTFFDMVDTDADGRITEEEVKEIIS 272 (912)
Q Consensus 208 ~~~lf~~l~d~d~~~~G-~Id~~EF~~~~~~-----~~~~~~ee~L~~aF~~fDkd~dG~It~eEl~~il~ 272 (912)
+.++|+.++++|++ | .|+.+||..++.. +....+++.++.+++.+|+|+||.|+++||..++.
T Consensus 10 l~~aF~~fD~~dgd--G~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~ 78 (88)
T cd05027 10 LIDVFHQYSGREGD--KHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVA 78 (88)
T ss_pred HHHHHHHhcccCCC--cCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 56777755445555 7 5888888888877 56666777788899999999999999999887775
No 140
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=97.70 E-value=3.4e-05 Score=54.03 Aligned_cols=27 Identities=19% Similarity=0.347 Sum_probs=24.7
Q ss_pred HHHHhhhcCCCCCCcccHHHHHHHHHh
Q 002525 291 AAMIMEELDPDNAGYIMIHNLETLLLQ 317 (912)
Q Consensus 291 ~~~i~~e~D~d~dG~Is~~EF~~~l~~ 317 (912)
++.+|+.+|.|+||+|+++||..+|++
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 456999999999999999999999975
No 141
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=97.69 E-value=0.00013 Score=83.05 Aligned_cols=69 Identities=26% Similarity=0.304 Sum_probs=54.4
Q ss_pred HHHHHHHHHH--hcCCChHHHHHHHHhHhCCCCCCcccHHHHHHHHHhhhccCcccchHHHHHHHHHHHhhhcCCCCCCc
Q 002525 228 KAQLKEFWDQ--ISDESFDSRLQTFFDMVDTDADGRITEEEVKEIISLSASANKLSNIQKQAEEYAAMIMEELDPDNAGY 305 (912)
Q Consensus 228 ~~EF~~~~~~--~~~~~~ee~L~~aF~~fDkd~dG~It~eEl~~il~~~~~~~~l~~~~~~~ee~~~~i~~e~D~d~dG~ 305 (912)
.++++..... .+....+..++.+|++||.|+||+|+.+||.. ++.+|+.+|.|+||.
T Consensus 315 L~~~i~~~~~~~~~~~~~~~~l~~aF~~~D~dgdG~Is~~E~~~---------------------~~~~F~~~D~d~DG~ 373 (391)
T PRK12309 315 LEKLLAHRLARLEGGEAFTHAAQEIFRLYDLDGDGFITREEWLG---------------------SDAVFDALDLNHDGK 373 (391)
T ss_pred HHHHHHHHHHHhhccChhhHHHHHHHHHhCCCCCCcCcHHHHHH---------------------HHHHHHHhCCCCCCC
Confidence 4455543322 24456788999999999999999999999832 123899999999999
Q ss_pred ccHHHHHHHHHh
Q 002525 306 IMIHNLETLLLQ 317 (912)
Q Consensus 306 Is~~EF~~~l~~ 317 (912)
|+++||...+..
T Consensus 374 Is~eEf~~~~~~ 385 (391)
T PRK12309 374 ITPEEMRAGLGA 385 (391)
T ss_pred CcHHHHHHHHHH
Confidence 999999998864
No 142
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=97.69 E-value=0.00023 Score=79.68 Aligned_cols=145 Identities=13% Similarity=0.236 Sum_probs=99.8
Q ss_pred HHHHHHHHHHcCC--CCCceeehhhhcccc-cCCC--CCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhcCCChHH
Q 002525 171 PAVEKRYNELAIT--TSDGLLHCSMFGECI-GMNK--ESKEFAGELFRGLCRKHNISGDSINKAQLKEFWDQISDESFDS 245 (912)
Q Consensus 171 ~~l~~~F~~ld~~--d~dG~I~~~ef~~~l-g~~~--~~~~~~~~lf~~l~d~d~~~~G~Id~~EF~~~~~~~~~~~~ee 245 (912)
++|+..|.+++.. ++.-..+-++|.... |+-. ..+....++...++|.-.| |-|+|+||.++-..+| .+|.
T Consensus 33 ~eLr~if~~~as~e~~ge~~mt~edFv~~ylgL~~e~~~n~~~v~Lla~iaD~tKD--glisf~eF~afe~~lC--~pDa 108 (694)
T KOG0751|consen 33 KELRSIFLKYASIEKNGESYMTPEDFVRRYLGLYNESNFNDKIVRLLASIADQTKD--GLISFQEFRAFESVLC--APDA 108 (694)
T ss_pred HHHHHHHHHHhHHhhccccccCHHHHHHHHHhhcccccCChHHHHHHHhhhhhccc--ccccHHHHHHHHhhcc--CchH
Confidence 4566666666532 334457888987653 3321 1334456666666665554 9999999999877665 3588
Q ss_pred HHHHHHhHhCCCCCCcccHHHHHHHHHhhhccCccc---------------------------chHHHHHHHHHHHhhhc
Q 002525 246 RLQTFFDMVDTDADGRITEEEVKEIISLSASANKLS---------------------------NIQKQAEEYAAMIMEEL 298 (912)
Q Consensus 246 ~L~~aF~~fDkd~dG~It~eEl~~il~~~~~~~~l~---------------------------~~~~~~ee~~~~i~~e~ 298 (912)
.-+.+|+.||+.++|.+|.+++.+++......+... .+.+-.+|...+.|.+-
T Consensus 109 l~~~aFqlFDr~~~~~vs~~~~~~if~~t~l~~~~~f~~d~efI~~~Fg~~~~r~~ny~~f~Q~lh~~~~E~~~qafr~~ 188 (694)
T KOG0751|consen 109 LFEVAFQLFDRLGNGEVSFEDVADIFGQTNLHHHIPFNWDSEFIKLHFGDIRKRHLNYAEFTQFLHEFQLEHAEQAFREK 188 (694)
T ss_pred HHHHHHHHhcccCCCceehHHHHHHHhccccccCCCccCCcchHHHHhhhHHHHhccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 899999999999999999999999996311111100 01122455677788889
Q ss_pred CCCCCCcccHHHHHHHHHhCC
Q 002525 299 DPDNAGYIMIHNLETLLLQAP 319 (912)
Q Consensus 299 D~d~dG~Is~~EF~~~l~~~p 319 (912)
|..++|.||--+|...|-...
T Consensus 189 d~~~ng~is~Ldfq~imvt~~ 209 (694)
T KOG0751|consen 189 DKAKNGFISVLDFQDIMVTIR 209 (694)
T ss_pred cccCCCeeeeechHhhhhhhh
Confidence 999999999988988887643
No 143
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=97.68 E-value=6e-05 Score=68.86 Aligned_cols=47 Identities=19% Similarity=0.304 Sum_probs=22.8
Q ss_pred CcccHHHHHHHHHHhcCCChHHHHHHHHhHhCCCCCCcccHHHHHHHHH
Q 002525 224 DSINKAQLKEFWDQISDESFDSRLQTFFDMVDTDADGRITEEEVKEIIS 272 (912)
Q Consensus 224 G~Id~~EF~~~~~~~~~~~~ee~L~~aF~~fDkd~dG~It~eEl~~il~ 272 (912)
|.|+++|+..++... ...++.++.+|..+|.|++|+|+++||..++.
T Consensus 25 G~Is~~el~~~l~~~--~~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~ 71 (96)
T smart00027 25 GTVTGAQAKPILLKS--GLPQTLLAKIWNLADIDNDGELDKDEFALAMH 71 (96)
T ss_pred CeEeHHHHHHHHHHc--CCCHHHHHHHHHHhcCCCCCCcCHHHHHHHHH
Confidence 444444444444432 12334455555555555555555555555443
No 144
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=97.66 E-value=0.00015 Score=65.27 Aligned_cols=65 Identities=20% Similarity=0.236 Sum_probs=52.0
Q ss_pred HHHHHHHHHHhhCCCCCCcccHHHHHHHHHH-hcCCChH-HHHHHHHhHhCCCCCCcccHHHHHHHHHh
Q 002525 207 FAGELFRGLCRKHNISGDSINKAQLKEFWDQ-ISDESFD-SRLQTFFDMVDTDADGRITEEEVKEIISL 273 (912)
Q Consensus 207 ~~~~lf~~l~d~d~~~~G~Id~~EF~~~~~~-~~~~~~e-e~L~~aF~~fDkd~dG~It~eEl~~il~~ 273 (912)
.+.+.|+.++..+++ |.|+.+||...+.. +....++ +.++.+|+..|.|+||.|+++||..+|..
T Consensus 9 ~l~~~F~~fd~~~~~--g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~ 75 (89)
T cd05022 9 TLVSNFHKASVKGGK--ESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGE 75 (89)
T ss_pred HHHHHHHHHhCCCCC--CeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 356788855432444 99999999999987 6654555 88999999999999999999999988863
No 145
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=97.65 E-value=0.00018 Score=65.16 Aligned_cols=65 Identities=17% Similarity=0.305 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHhhCCCCCC-cccHHHHHHHHHH-hc----CCChHHHHHHHHhHhCCCCCCcccHHHHHHHHH
Q 002525 206 EFAGELFRGLCRKHNISGD-SINKAQLKEFWDQ-IS----DESFDSRLQTFFDMVDTDADGRITEEEVKEIIS 272 (912)
Q Consensus 206 ~~~~~lf~~l~d~d~~~~G-~Id~~EF~~~~~~-~~----~~~~ee~L~~aF~~fDkd~dG~It~eEl~~il~ 272 (912)
+.+.+.|+.++|.+++ | .|+.+||..++.. +. ....++.++.+|+.+|.|++|.|+.+||..++.
T Consensus 9 ~~l~~~F~~fDd~dg~--G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~ 79 (92)
T cd05025 9 ETLINVFHAHSGKEGD--KYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVA 79 (92)
T ss_pred HHHHHHHHHHhcccCC--CCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 3466778855446665 7 4888888888764 32 234567788888888998899999888888775
No 146
>COG2717 Predicted membrane protein [Function unknown]
Probab=97.62 E-value=0.00053 Score=70.47 Aligned_cols=124 Identities=17% Similarity=0.172 Sum_probs=86.8
Q ss_pred ccchhHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCccCCCCCCccceeccccchhHHHHHHHHHHHHHH
Q 002525 442 DDNLNFHKVIAVGIGIGVILHGGAHLTCDFPRLLHATEEEYEPMKPYFGDEQPDNYWWFVKGVEGVTGIIMVVLMVIAFT 521 (912)
Q Consensus 442 d~~~~fHr~ia~~~~v~~~lH~i~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~g~tGii~~vl~~i~~~ 521 (912)
...+.+-|.+|..+++.+++|...|+..+-. ++ +...+.+ ..+-.....|++++++|..+.+
T Consensus 71 ~~l~~~Rr~LGl~af~~~~lH~~~Y~~~~l~---------~~-~~~~~~d--------~~~rpyitiG~iaflll~pLal 132 (209)
T COG2717 71 PKLIRIRRALGLWAFFYALLHFTAYLVLDLG---------LD-LALLGLD--------LLKRPYITIGMIAFLLLIPLAL 132 (209)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------cc-HHHhhHH--------HHHhHHHHHHHHHHHHHHHHHH
Confidence 3445789999999999999999998765321 11 1111111 1122345679999999999999
Q ss_pred hhhhhhhhccCCCCCccccccccchhhhHHHHHHHHHHHHHHHhhhhhhcccccccchhhhhhHhhHHHHHHHHHHHH
Q 002525 522 LATPWFRRNKLNLPKPLKRLTGFNAFWYSHHLFIIVYTLLIVHGIKLYLTKKWYQKTTWMYLAVPMVLYACERLTRAL 599 (912)
Q Consensus 522 ~s~~~~Rr~~~~~~~~l~~~~~ye~F~~~H~l~~i~~vll~~H~~~~~~~~~w~~~~~w~yl~~~~~l~~~dr~~R~~ 599 (912)
+|..+.||+. + ..|...|.+..+++++..+|-.+..- . .....+.|.++ .+.|.+.|+.+..
T Consensus 133 TS~k~~~rrl-----------G-~rW~~LHrLvYl~~~L~~lH~~~s~K--~-~~~~~vlY~ii-~~~lll~R~~k~~ 194 (209)
T COG2717 133 TSFKWVRRRL-----------G-KRWKKLHRLVYLALILGALHYLWSVK--I-DMPEPVLYAII-FAVLLLLRVTKTR 194 (209)
T ss_pred HhhHHHHHHH-----------H-HHHHHHHHHHHHHHHHHHHHHHHhcC--c-cchHHHHHHHH-HHHHHHHHHHHHH
Confidence 9999999984 6 77899999999999999999776321 1 12344566543 4667777877665
No 147
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=97.61 E-value=0.00022 Score=57.89 Aligned_cols=61 Identities=26% Similarity=0.373 Sum_probs=50.4
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHHhcCCChHHHHHHHHhHhCCCCCCcccHHHHHHHH
Q 002525 208 AGELFRGLCRKHNISGDSINKAQLKEFWDQISDESFDSRLQTFFDMVDTDADGRITEEEVKEII 271 (912)
Q Consensus 208 ~~~lf~~l~d~d~~~~G~Id~~EF~~~~~~~~~~~~ee~L~~aF~~fDkd~dG~It~eEl~~il 271 (912)
+..+|+. .|.+.+ |.|+++||..++........++.+..+|+.+|.|++|.|+.+||..++
T Consensus 2 ~~~~f~~-~d~~~~--g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRL-FDKDGD--GTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHH-hCCCCC--CcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 3567774 344444 999999999999888777888899999999999999999999997754
No 148
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=97.57 E-value=0.00027 Score=64.33 Aligned_cols=64 Identities=14% Similarity=0.302 Sum_probs=49.3
Q ss_pred HHHHHHHHHHhhCC-CCCCcccHHHHHHHHHH-----hcCCChHHHHHHHHhHhCCCCCCcccHHHHHHHHH
Q 002525 207 FAGELFRGLCRKHN-ISGDSINKAQLKEFWDQ-----ISDESFDSRLQTFFDMVDTDADGRITEEEVKEIIS 272 (912)
Q Consensus 207 ~~~~lf~~l~d~d~-~~~G~Id~~EF~~~~~~-----~~~~~~ee~L~~aF~~fDkd~dG~It~eEl~~il~ 272 (912)
.+.+.|+.+++.|+ + |.|+.+|+..++.. +....+++.++.+|+.+|.|++|.|+++||..++.
T Consensus 9 ~l~~~F~~~D~~dg~d--G~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~ 78 (94)
T cd05031 9 SLILTFHRYAGKDGDK--NTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVA 78 (94)
T ss_pred HHHHHHHHHhccCCCC--CeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 35677775554343 4 89999999988865 23345678899999999999999999999988875
No 149
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=97.52 E-value=0.00022 Score=71.36 Aligned_cols=66 Identities=20% Similarity=0.294 Sum_probs=51.1
Q ss_pred HHHHHHhHhCCCCCCcccHHHHHHHHHhhhccCcccchHHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhCC
Q 002525 246 RLQTFFDMVDTDADGRITEEEVKEIISLSASANKLSNIQKQAEEYAAMIMEELDPDNAGYIMIHNLETLLLQAP 319 (912)
Q Consensus 246 ~L~~aF~~fDkd~dG~It~eEl~~il~~~~~~~~l~~~~~~~ee~~~~i~~e~D~d~dG~Is~~EF~~~l~~~p 319 (912)
....+|+.||.|.||+|+..||+.+|...+.+. ..--++.+|+++|-|.||.|||-||.-+..+.-
T Consensus 100 ~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQ--------THL~lK~mikeVded~dgklSfreflLIfrkaa 165 (244)
T KOG0041|consen 100 DAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQ--------THLGLKNMIKEVDEDFDGKLSFREFLLIFRKAA 165 (244)
T ss_pred HHHHHHHHhcccccccccHHHHHHHHHHhCCch--------hhHHHHHHHHHhhcccccchhHHHHHHHHHHHh
Confidence 578889999999999999999999986322211 122345699999999999999999987776543
No 150
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=97.51 E-value=0.00089 Score=63.62 Aligned_cols=108 Identities=19% Similarity=0.203 Sum_probs=87.4
Q ss_pred CCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhcCCChHHHHHHHHhHhCCC--CCCcccHHHHHHHHHhhhccCcc
Q 002525 203 ESKEFAGELFRGLCRKHNISGDSINKAQLKEFWDQISDESFDSRLQTFFDMVDTD--ADGRITEEEVKEIISLSASANKL 280 (912)
Q Consensus 203 ~~~~~~~~lf~~l~d~d~~~~G~Id~~EF~~~~~~~~~~~~ee~L~~aF~~fDkd--~dG~It~eEl~~il~~~~~~~~l 280 (912)
++.+..+++|. ++|..++ |+|++.+--..+..++.++++..+.+.-..++++ +--+|++|++.-++..... ++
T Consensus 8 d~~~e~ke~F~-lfD~~gD--~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vak-nk- 82 (152)
T KOG0030|consen 8 DQMEEFKEAFL-LFDRTGD--GKISGSQVGDVLRALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAK-NK- 82 (152)
T ss_pred chHHHHHHHHH-HHhccCc--ccccHHHHHHHHHHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHh-cc-
Confidence 45667899999 6666676 9999999999999999999999999999999988 6689999999988864332 22
Q ss_pred cchHHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhC
Q 002525 281 SNIQKQAEEYAAMIMEELDPDNAGYIMIHNLETLLLQA 318 (912)
Q Consensus 281 ~~~~~~~ee~~~~i~~e~D~d~dG~Is~~EF~~~l~~~ 318 (912)
.+...+++++ -++-+|++++|.|...|+.++|...
T Consensus 83 --~q~t~edfve-gLrvFDkeg~G~i~~aeLRhvLttl 117 (152)
T KOG0030|consen 83 --DQGTYEDFVE-GLRVFDKEGNGTIMGAELRHVLTTL 117 (152)
T ss_pred --ccCcHHHHHH-HHHhhcccCCcceeHHHHHHHHHHH
Confidence 1222344444 4889999999999999999999864
No 151
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=97.46 E-value=0.00013 Score=52.03 Aligned_cols=27 Identities=44% Similarity=0.694 Sum_probs=24.4
Q ss_pred HHHHHHhHhCCCCCCcccHHHHHHHHH
Q 002525 246 RLQTFFDMVDTDADGRITEEEVKEIIS 272 (912)
Q Consensus 246 ~L~~aF~~fDkd~dG~It~eEl~~il~ 272 (912)
+++.+|+.||+|+||+|+.+||+.++.
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILR 27 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 578999999999999999999999986
No 152
>KOG1159 consensus NADP-dependent flavoprotein reductase [Energy production and conversion]
Probab=97.45 E-value=0.00089 Score=75.64 Aligned_cols=115 Identities=19% Similarity=0.292 Sum_probs=68.7
Q ss_pred EEEEEeCCCCCCcccceeeeecCCCCeEEEEEEec-----------CcchHHHHHHHhhccCCCCCCCCccchhhhccCC
Q 002525 636 YMFVNCAAVSPFEWHPFSITSSPGDDYLSVHIRTL-----------GDWTRQLKTVFSEVCQPAPAGKSGLLRAERENNS 704 (912)
Q Consensus 636 yv~l~~p~~s~~e~HPFTIaS~p~~~~l~l~Ir~~-----------G~~T~~L~~~~~~~~~~~~~g~sg~~~~~~~~~~ 704 (912)
|++=.+|.+ ..+.|||+|.|+.-.+.+.|-.+ |=-|+.|.++. +|
T Consensus 358 yl~d~~P~I---rPR~fSIas~~~~~~leL~VAiV~ykT~l~~pRrGlCS~wl~sL~--------~g------------- 413 (574)
T KOG1159|consen 358 YLLDLLPVI---RPRAFSIASSPGAHHLELLVAIVEYKTILKEPRRGLCSNWLASLK--------PG------------- 413 (574)
T ss_pred HHHHhcccc---ccceeeeccCCCCCceeEEEEEEEEeeeccccccchhHHHHhhcC--------CC-------------
Confidence 333345555 67899999999987777666443 33444444432 11
Q ss_pred CCCCeEEEeCCCCCCCCCCCCCCEEEEEEcCcchhhHHHHHHHHHHhccccCccccccccccCCCCCCCCCcceEEEEEE
Q 002525 705 RGFPKILIDGPYGAPAQDYKKYDVVLLVGLGIGATPMISIVKDIINNMKSEDNNLESGLTVNNNNKNSSFNTRKAYFYWV 784 (912)
Q Consensus 705 ~~~~~v~IdGPYG~~~~~~~~y~~vllVagGiGITP~lsiL~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~l~W~ 784 (912)
...++.|. =|....+......++|||-|+||||+.+++++-+.+. ....-|++.
T Consensus 414 -~~i~~~v~--~g~l~~p~~~~~PlImVGPGTGvAPfRa~i~er~~q~-----------------------~~~~~lFfG 467 (574)
T KOG1159|consen 414 -DEIPIKVR--PGTLYFPSDLNKPLIMVGPGTGVAPFRALIQERIYQG-----------------------DKENVLFFG 467 (574)
T ss_pred -CeEEEEEe--cCccccCCCCCCCeEEEcCCCCcccHHHHHHHHHhhc-----------------------cCCceEEEe
Confidence 12233333 2433222222347899999999999999999876431 122367889
Q ss_pred eCCCCcHHHHHHHHHH
Q 002525 785 TREQGSFEWFKGIMNE 800 (912)
Q Consensus 785 ~R~~~~~~wf~~~L~e 800 (912)
||+.+.=-.|.+...+
T Consensus 468 CR~K~~Df~y~~eW~~ 483 (574)
T KOG1159|consen 468 CRNKDKDFLYEDEWTE 483 (574)
T ss_pred cccCCccccccchhhh
Confidence 9988642245544433
No 153
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=97.43 E-value=0.00056 Score=61.55 Aligned_cols=64 Identities=16% Similarity=0.271 Sum_probs=46.6
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHHh-----cCCChHHHHHHHHhHhCCCCCCcccHHHHHHHHH
Q 002525 208 AGELFRGLCRKHNISGDSINKAQLKEFWDQI-----SDESFDSRLQTFFDMVDTDADGRITEEEVKEIIS 272 (912)
Q Consensus 208 ~~~lf~~l~d~d~~~~G~Id~~EF~~~~~~~-----~~~~~ee~L~~aF~~fDkd~dG~It~eEl~~il~ 272 (912)
+..+|+..++++++ +++|+.+||..++... .....++.+..+++.+|.|+||.|+++||..++.
T Consensus 11 l~~~F~~y~~~dg~-~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~ 79 (89)
T cd05023 11 LIAVFQKYAGKDGD-SYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIG 79 (89)
T ss_pred HHHHHHHHhccCCC-cCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHH
Confidence 45566654555553 2478888888877653 2334567788899999999999999999988775
No 154
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=97.41 E-value=0.00016 Score=48.89 Aligned_cols=25 Identities=40% Similarity=0.711 Sum_probs=22.6
Q ss_pred HHHHHhHhCCCCCCcccHHHHHHHH
Q 002525 247 LQTFFDMVDTDADGRITEEEVKEII 271 (912)
Q Consensus 247 L~~aF~~fDkd~dG~It~eEl~~il 271 (912)
|+.+|+.+|.|+||.|+.+|++.++
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHHC
Confidence 5789999999999999999998864
No 155
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=97.41 E-value=0.00048 Score=57.82 Aligned_cols=59 Identities=25% Similarity=0.412 Sum_probs=43.3
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHHhcCCChHHHHHHHHhHhCCCCCCcccHHHHHHHHH
Q 002525 209 GELFRGLCRKHNISGDSINKAQLKEFWDQISDESFDSRLQTFFDMVDTDADGRITEEEVKEIIS 272 (912)
Q Consensus 209 ~~lf~~l~d~d~~~~G~Id~~EF~~~~~~~~~~~~ee~L~~aF~~fDkd~dG~It~eEl~~il~ 272 (912)
+++|+.+ |.+++ |.|+.+|+..++...+ ..++.++.+|+.+|.|++|.|+.+|+..++.
T Consensus 2 ~~~F~~~-D~~~~--G~i~~~el~~~l~~~g--~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~ 60 (67)
T cd00052 2 DQIFRSL-DPDGD--GLISGDEARPFLGKSG--LPRSVLAQIWDLADTDKDGKLDKEEFAIAMH 60 (67)
T ss_pred hHHHHHh-CCCCC--CcCcHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCcCCHHHHHHHHH
Confidence 3567743 44444 8888888888877653 2566788888888888888888888877775
No 156
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=97.39 E-value=0.00069 Score=60.87 Aligned_cols=64 Identities=16% Similarity=0.336 Sum_probs=47.0
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHH---hcCCChHHHHHHHHhHhCCCCCCcccHHHHHHHHH
Q 002525 208 AGELFRGLCRKHNISGDSINKAQLKEFWDQ---ISDESFDSRLQTFFDMVDTDADGRITEEEVKEIIS 272 (912)
Q Consensus 208 ~~~lf~~l~d~d~~~~G~Id~~EF~~~~~~---~~~~~~ee~L~~aF~~fDkd~dG~It~eEl~~il~ 272 (912)
+-++|+.++.+++ ++|.|+.+||..++.. ++...+++.+..+|+.+|.|+||.|+++||..++.
T Consensus 12 ~i~~F~~y~~~~~-~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~ 78 (88)
T cd05029 12 LVAIFHKYSGREG-DKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLG 78 (88)
T ss_pred HHHHHHHHHccCC-CCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHH
Confidence 4466775554444 2388888888888853 45556778888888888888888888888877775
No 157
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=97.37 E-value=0.00073 Score=75.22 Aligned_cols=129 Identities=15% Similarity=0.297 Sum_probs=83.0
Q ss_pred HHHHHHHHcCCCCCceeehhhhcccc----cCCCCC-HHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhcCCChHHHH
Q 002525 173 VEKRYNELAITTSDGLLHCSMFGECI----GMNKES-KEFAGELFRGLCRKHNISGDSINKAQLKEFWDQISDESFDSRL 247 (912)
Q Consensus 173 l~~~F~~ld~~d~dG~I~~~ef~~~l----g~~~~~-~~~~~~lf~~l~d~d~~~~G~Id~~EF~~~~~~~~~~~~ee~L 247 (912)
++-.|..+|. ..+|.|+..+|.+.+ +.+.+. ....+++-..+ +.+ +-.|+++||.++..-+.+...-+-.
T Consensus 320 l~lEF~~~~~-~~~g~Ise~DFA~~lL~~a~~n~~~k~~~lkrvk~kf-~~~---~~gISl~Ef~~Ff~Fl~~l~dfd~A 394 (489)
T KOG2643|consen 320 LELEFERFDK-GDSGAISEVDFAELLLAYAGVNSKKKHKYLKRVKEKF-KDD---GKGISLQEFKAFFRFLNNLNDFDIA 394 (489)
T ss_pred HHHHHHHhCc-ccccccCHHHHHHHHHHHcccchHhHHHHHHHHHHhc-cCC---CCCcCHHHHHHHHHHHhhhhHHHHH
Confidence 3445888887 445899999998876 333111 11233333322 111 2679999998887665544332333
Q ss_pred HHHHhHhCCCCCCcccHHHHHHHHHhhhccCcccchHHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHh
Q 002525 248 QTFFDMVDTDADGRITEEEVKEIISLSASANKLSNIQKQAEEYAAMIMEELDPDNAGYIMIHNLETLLLQ 317 (912)
Q Consensus 248 ~~aF~~fDkd~dG~It~eEl~~il~~~~~~~~l~~~~~~~ee~~~~i~~e~D~d~dG~Is~~EF~~~l~~ 317 (912)
-.+|. ...+.|+..+++.+...... ..++ +-.++-+|.-+|.|+||.+|++||..+|++
T Consensus 395 l~fy~----~Ag~~i~~~~f~raa~~vtG-veLS------dhVvdvvF~IFD~N~Dg~LS~~EFl~Vmk~ 453 (489)
T KOG2643|consen 395 LRFYH----MAGASIDEKTFQRAAKVVTG-VELS------DHVVDVVFTIFDENNDGTLSHKEFLAVMKR 453 (489)
T ss_pred HHHHH----HcCCCCCHHHHHHHHHHhcC-cccc------cceeeeEEEEEccCCCCcccHHHHHHHHHH
Confidence 33333 35778999999988864322 2233 235566899999999999999999999986
No 158
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=97.37 E-value=0.00044 Score=61.95 Aligned_cols=68 Identities=15% Similarity=0.250 Sum_probs=49.8
Q ss_pred HHHHHHhHhCCCCCCcccHHHHHHHHHhhhccCcccchHHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHh
Q 002525 246 RLQTFFDMVDTDADGRITEEEVKEIISLSASANKLSNIQKQAEEYAAMIMEELDPDNAGYIMIHNLETLLLQ 317 (912)
Q Consensus 246 ~L~~aF~~fDkd~dG~It~eEl~~il~~~~~~~~l~~~~~~~ee~~~~i~~e~D~d~dG~Is~~EF~~~l~~ 317 (912)
.|-..|..|-.| .|.+++.||+++|..... +-+.... ..+.++.+|+.+|.|+||.|+|+||..++-.
T Consensus 9 ~lI~~FhkYaG~-~~tLsk~Elk~Ll~~Elp-~~l~~~~--d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~ 76 (91)
T cd05024 9 KMMLTFHKFAGE-KNYLNRDDLQKLMEKEFS-EFLKNQN--DPMAVDKIMKDLDDCRDGKVGFQSFFSLIAG 76 (91)
T ss_pred HHHHHHHHHcCC-CCcCCHHHHHHHHHHHhH-HHHcCCC--CHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 456678888643 569999999999974322 1111111 1567888999999999999999999998864
No 159
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=97.34 E-value=0.00063 Score=64.27 Aligned_cols=44 Identities=20% Similarity=0.331 Sum_probs=28.7
Q ss_pred CcccHHHHHHHHHHhcCCChHHHHHHHHhHhCCCCCCcccHHHHHHHH
Q 002525 224 DSINKAQLKEFWDQISDESFDSRLQTFFDMVDTDADGRITEEEVKEII 271 (912)
Q Consensus 224 G~Id~~EF~~~~~~~~~~~~ee~L~~aF~~fDkd~dG~It~eEl~~il 271 (912)
|.|+.+|+..+. ....+..+..+|+.+|.|+||+||.+|+...+
T Consensus 63 G~Ls~~EL~~~~----l~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 63 GKLSHHELAPIR----LDPNEHCIKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred CcCCHHHHHHHH----ccchHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 555555555443 12235556777888888888888888887776
No 160
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=97.30 E-value=0.0022 Score=62.03 Aligned_cols=98 Identities=19% Similarity=0.225 Sum_probs=78.8
Q ss_pred HHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhcCCChHHHHHHHHhHhCCCCCCcccHHHHHHHHHhhhccCcccchHHH
Q 002525 207 FAGELFRGLCRKHNISGDSINKAQLKEFWDQISDESFDSRLQTFFDMVDTDADGRITEEEVKEIISLSASANKLSNIQKQ 286 (912)
Q Consensus 207 ~~~~lf~~l~d~d~~~~G~Id~~EF~~~~~~~~~~~~ee~L~~aF~~fDkd~dG~It~eEl~~il~~~~~~~~l~~~~~~ 286 (912)
+..+.|..+ |.+.+ |.|+.+++...+..+++..+++.|..+++. +.|-|++--|..++... +.-.+.
T Consensus 33 EfKEAF~~m-DqnrD--G~IdkeDL~d~~aSlGk~~~d~elDaM~~E----a~gPINft~FLTmfGek-----L~gtdp- 99 (171)
T KOG0031|consen 33 EFKEAFNLM-DQNRD--GFIDKEDLRDMLASLGKIASDEELDAMMKE----APGPINFTVFLTMFGEK-----LNGTDP- 99 (171)
T ss_pred HHHHHHHHH-hccCC--CcccHHHHHHHHHHcCCCCCHHHHHHHHHh----CCCCeeHHHHHHHHHHH-----hcCCCH-
Confidence 356778744 44444 999999999999999999999999999974 89999999887777522 222122
Q ss_pred HHHHHHHHhhhcCCCCCCcccHHHHHHHHHhC
Q 002525 287 AEEYAAMIMEELDPDNAGYIMIHNLETLLLQA 318 (912)
Q Consensus 287 ~ee~~~~i~~e~D~d~dG~Is~~EF~~~l~~~ 318 (912)
++.+-..|+.+|.+++|.|.-+.++++|...
T Consensus 100 -e~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~ 130 (171)
T KOG0031|consen 100 -EEVILNAFKTFDDEGSGKIDEDYLRELLTTM 130 (171)
T ss_pred -HHHHHHHHHhcCccCCCccCHHHHHHHHHHh
Confidence 6778889999999999999999999999874
No 161
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=97.17 E-value=0.0015 Score=58.54 Aligned_cols=65 Identities=20% Similarity=0.341 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHhh-CCCCCCcccHHHHHHHHHH-hcCC----ChHHHHHHHHhHhCCCCCCcccHHHHHHHHH
Q 002525 206 EFAGELFRGLCRK-HNISGDSINKAQLKEFWDQ-ISDE----SFDSRLQTFFDMVDTDADGRITEEEVKEIIS 272 (912)
Q Consensus 206 ~~~~~lf~~l~d~-d~~~~G~Id~~EF~~~~~~-~~~~----~~ee~L~~aF~~fDkd~dG~It~eEl~~il~ 272 (912)
+.+.++|..++.. +++ |.|+.+||..++.. +... ..++.++.+|..+|.|++|.|+.+||..++.
T Consensus 8 ~~l~~~F~~~D~~~~~~--G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~ 78 (88)
T cd00213 8 ETIIDVFHKYSGKEGDK--DTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIG 78 (88)
T ss_pred HHHHHHHHHHhhccCCC--CcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHH
Confidence 3466778855442 455 89999999988865 3221 2477899999999999999999999988875
No 162
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=97.16 E-value=0.00036 Score=71.72 Aligned_cols=134 Identities=13% Similarity=0.049 Sum_probs=88.0
Q ss_pred HHHHHHHHHHcCCCCCceeehhhhcccccCCC-----CCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhcCCChH-
Q 002525 171 PAVEKRYNELAITTSDGLLHCSMFGECIGMNK-----ESKEFAGELFRGLCRKHNISGDSINKAQLKEFWDQISDESFD- 244 (912)
Q Consensus 171 ~~l~~~F~~ld~~d~dG~I~~~ef~~~lg~~~-----~~~~~~~~lf~~l~d~d~~~~G~Id~~EF~~~~~~~~~~~~e- 244 (912)
..+..+|.+.|. |.||.|+..|+++.+-.+. +..+..+-.|++ .|.|++ |.|.++||.--.......+.+
T Consensus 101 rklmviFsKvDV-NtDrkisAkEmqrwImektaEHfqeameeSkthFra-VDpdgD--GhvsWdEykvkFlaskghseke 176 (362)
T KOG4251|consen 101 RKLMVIFSKVDV-NTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRA-VDPDGD--GHVSWDEYKVKFLASKGHSEKE 176 (362)
T ss_pred HHHHHHHhhccc-CccccccHHHHHHHHHHHHHHHHHHHHhhhhhheee-eCCCCC--CceehhhhhhHHHhhcCcchHH
Confidence 457788999999 9999999999988772210 011222345563 455555 999999997654433211111
Q ss_pred -------------HHHHHHHhHhCCCCCCcccH---------HHHHHHHHhhhccCcccchHHHHHHHHHHHhhhcCCCC
Q 002525 245 -------------SRLQTFFDMVDTDADGRITE---------EEVKEIISLSASANKLSNIQKQAEEYAAMIMEELDPDN 302 (912)
Q Consensus 245 -------------e~L~~aF~~fDkd~dG~It~---------eEl~~il~~~~~~~~l~~~~~~~ee~~~~i~~e~D~d~ 302 (912)
+.-.+.|..-|+|.+|+.+. +|+..++--..+. ..+...+++|+..+|+|+
T Consensus 177 vadairlneelkVDeEtqevlenlkdRwyqaDsppadlllteeEflsFLHPEhSr-------gmLrfmVkeivrdlDqdg 249 (362)
T KOG4251|consen 177 VADAIRLNEELKVDEETQEVLENLKDRWYQADSPPADLLLTEEEFLSFLHPEHSR-------GMLRFMVKEIVRDLDQDG 249 (362)
T ss_pred HHHHhhccCcccccHHHHHHHHhhhhhhccccCchhhhhhhHHHHHHHcChHhhh-------hhHHHHHHHHHHHhccCC
Confidence 11233455566777776655 8887777422211 234678888999999999
Q ss_pred CCcccHHHHHHHH
Q 002525 303 AGYIMIHNLETLL 315 (912)
Q Consensus 303 dG~Is~~EF~~~l 315 (912)
|.++|..||+.+.
T Consensus 250 DkqlSvpeFislp 262 (362)
T KOG4251|consen 250 DKQLSVPEFISLP 262 (362)
T ss_pred CeeecchhhhcCC
Confidence 9999999998753
No 163
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=97.09 E-value=0.0029 Score=78.73 Aligned_cols=137 Identities=13% Similarity=0.192 Sum_probs=97.2
Q ss_pred CCCCCChHHHHHHHHHHcCCCCCceeehhhhcccc---cCCC------CCHHHHHHHHHHHHhhCCCCCCcccHHHHHHH
Q 002525 164 GAAGNGWPAVEKRYNELAITTSDGLLHCSMFGECI---GMNK------ESKEFAGELFRGLCRKHNISGDSINKAQLKEF 234 (912)
Q Consensus 164 ~~~~~~~~~l~~~F~~ld~~d~dG~I~~~ef~~~l---g~~~------~~~~~~~~lf~~l~d~d~~~~G~Id~~EF~~~ 234 (912)
+-.++.+.++.-+|+-+|. +++|.|+.++|+.|| |... +.+...+++++++ |.+.+ |.|+..||.++
T Consensus 2246 GVtEe~L~EFs~~fkhFDk-ek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~v-DP~r~--G~Vsl~dY~af 2321 (2399)
T KOG0040|consen 2246 GVTEEQLKEFSMMFKHFDK-EKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLV-DPNRD--GYVSLQDYMAF 2321 (2399)
T ss_pred CCCHHHHHHHHHHHHHhch-hhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhc-CCCCc--CcccHHHHHHH
Confidence 4444578888999999998 999999999999998 3210 1233567888854 33333 99999999999
Q ss_pred HHHh--cCCChHHHHHHHHhHhCCCCCCcccHHHHHHHHHhhhccCcccchHHHHHHHHHHHhhhcCCC----CCCcccH
Q 002525 235 WDQI--SDESFDSRLQTFFDMVDTDADGRITEEEVKEIISLSASANKLSNIQKQAEEYAAMIMEELDPD----NAGYIMI 308 (912)
Q Consensus 235 ~~~~--~~~~~ee~L~~aF~~fDkd~dG~It~eEl~~il~~~~~~~~l~~~~~~~ee~~~~i~~e~D~d----~dG~Is~ 308 (912)
|... .+...++.++.||+.+|. +.-||+++|+..-|. .++++=-+..|-..+|+- ..+.++|
T Consensus 2322 mi~~ETeNI~s~~eIE~AfraL~a-~~~yvtke~~~~~lt-----------reqaefc~s~m~~~~e~~~~~s~q~~l~y 2389 (2399)
T KOG0040|consen 2322 MISKETENILSSEEIEDAFRALDA-GKPYVTKEELYQNLT-----------REQAEFCMSKMKPYAETSSGRSDQVALDY 2389 (2399)
T ss_pred HHhcccccccchHHHHHHHHHhhc-CCccccHHHHHhcCC-----------HHHHHHHHHHhhhhcccccCCCccccccH
Confidence 9863 233456699999999999 889999999876552 122233334444445552 3467999
Q ss_pred HHHHHHHH
Q 002525 309 HNLETLLL 316 (912)
Q Consensus 309 ~EF~~~l~ 316 (912)
.+|..-+.
T Consensus 2390 ~dfv~sl~ 2397 (2399)
T KOG0040|consen 2390 KDFVNSLF 2397 (2399)
T ss_pred HHHHHHHh
Confidence 99987654
No 164
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=97.02 E-value=0.0022 Score=57.66 Aligned_cols=64 Identities=17% Similarity=0.346 Sum_probs=47.0
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHH-hcCCCh----HHHHHHHHhHhCCCCCCcccHHHHHHHHH
Q 002525 208 AGELFRGLCRKHNISGDSINKAQLKEFWDQ-ISDESF----DSRLQTFFDMVDTDADGRITEEEVKEIIS 272 (912)
Q Consensus 208 ~~~lf~~l~d~d~~~~G~Id~~EF~~~~~~-~~~~~~----ee~L~~aF~~fDkd~dG~It~eEl~~il~ 272 (912)
+-.+|...+.+++ .+|.|+.+||..++.. +....+ ++.++.+|+.+|.|++|.|+++||..++.
T Consensus 10 ~~~~f~~y~~~~~-~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~ 78 (88)
T cd05030 10 IINVFHQYSVRKG-HPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVI 78 (88)
T ss_pred HHHHHHHHhccCC-CcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHH
Confidence 4456665554443 2378888888888853 333233 78899999999999999999999988875
No 165
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=96.82 E-value=0.0011 Score=44.80 Aligned_cols=23 Identities=22% Similarity=0.458 Sum_probs=21.2
Q ss_pred HHhhhcCCCCCCcccHHHHHHHH
Q 002525 293 MIMEELDPDNAGYIMIHNLETLL 315 (912)
Q Consensus 293 ~i~~e~D~d~dG~Is~~EF~~~l 315 (912)
.+|+.+|.|+||.|+.+||.++|
T Consensus 3 ~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 3 DAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHTTTSSSEEEHHHHHHHH
T ss_pred HHHHHHcCCCCCcCCHHHHHHHC
Confidence 48999999999999999999875
No 166
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=96.73 E-value=0.0061 Score=62.92 Aligned_cols=139 Identities=13% Similarity=0.179 Sum_probs=85.0
Q ss_pred HHHHHHHHcCCCCCceeehhhhcccc-cCCCCC----------------HHHHHHHHHHHHhhCCCCCCcccH-------
Q 002525 173 VEKRYNELAITTSDGLLHCSMFGECI-GMNKES----------------KEFAGELFRGLCRKHNISGDSINK------- 228 (912)
Q Consensus 173 l~~~F~~ld~~d~dG~I~~~ef~~~l-g~~~~~----------------~~~~~~lf~~l~d~d~~~~G~Id~------- 228 (912)
-+--|+..|. |+||.|+-+||+--+ .++..+ .+..+++...+.+++ +..|-
T Consensus 142 SkthFraVDp-dgDGhvsWdEykvkFlaskghsekevadairlneelkVDeEtqevlenlkdRw----yqaDsppadlll 216 (362)
T KOG4251|consen 142 SKTHFRAVDP-DGDGHVSWDEYKVKFLASKGHSEKEVADAIRLNEELKVDEETQEVLENLKDRW----YQADSPPADLLL 216 (362)
T ss_pred hhhheeeeCC-CCCCceehhhhhhHHHhhcCcchHHHHHHhhccCcccccHHHHHHHHhhhhhh----ccccCchhhhhh
Confidence 4556999998 999999999997544 221001 112233333222222 44554
Q ss_pred --HHHHHHHHH-hcCCChHHHHHHHHhHhCCCCCCcccHHHHHHHHHhhhccCcccchH-HHHHHHHHHHhhhcCCCCCC
Q 002525 229 --AQLKEFWDQ-ISDESFDSRLQTFFDMVDTDADGRITEEEVKEIISLSASANKLSNIQ-KQAEEYAAMIMEELDPDNAG 304 (912)
Q Consensus 229 --~EF~~~~~~-~~~~~~ee~L~~aF~~fDkd~dG~It~eEl~~il~~~~~~~~l~~~~-~~~ee~~~~i~~e~D~d~dG 304 (912)
+||+.++-. .+.+.-..-+..+-..+|+|||-.++..||....--.-....-.+++ -..++..++.=++.|.|.||
T Consensus 217 teeEflsFLHPEhSrgmLrfmVkeivrdlDqdgDkqlSvpeFislpvGTVenqqgqdiddnwvkdRkkEFeElIDsNhDG 296 (362)
T KOG4251|consen 217 TEEEFLSFLHPEHSRGMLRFMVKEIVRDLDQDGDKQLSVPEFISLPVGTVENQQGQDIDDNWVKDRKKEFEELIDSNHDG 296 (362)
T ss_pred hHHHHHHHcChHhhhhhHHHHHHHHHHHhccCCCeeecchhhhcCCCcchhhhhccchHHHHHHHHHHHHHHHhhcCCcc
Confidence 888887643 22233345567778889999999999999876552111111111111 11233455566778999999
Q ss_pred cccHHHHHHHHH
Q 002525 305 YIMIHNLETLLL 316 (912)
Q Consensus 305 ~Is~~EF~~~l~ 316 (912)
.++++|+...+.
T Consensus 297 ivTaeELe~y~d 308 (362)
T KOG4251|consen 297 IVTAEELEDYVD 308 (362)
T ss_pred ceeHHHHHhhcC
Confidence 999999998853
No 167
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.60 E-value=0.0066 Score=55.68 Aligned_cols=71 Identities=17% Similarity=0.194 Sum_probs=53.2
Q ss_pred hHHHHHHHHhHhCCCCCCcccHHHHHHHHHhhhc-------cCcccchHHHHHHHHHHHhhhcCCCCCCcccHHHHHHH
Q 002525 243 FDSRLQTFFDMVDTDADGRITEEEVKEIISLSAS-------ANKLSNIQKQAEEYAAMIMEELDPDNAGYIMIHNLETL 314 (912)
Q Consensus 243 ~ee~L~~aF~~fDkd~dG~It~eEl~~il~~~~~-------~~~l~~~~~~~ee~~~~i~~e~D~d~dG~Is~~EF~~~ 314 (912)
+++.--.-|+|.|.|+||+|+--||...+.-... ...++ .+...+..++.+++.-|.|+||+|+|.||...
T Consensus 65 peqlqfHYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~-sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 65 PEQLQFHYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLS-SEAELERLIDAVLDDDDFNGDGVIDYGEFLKR 142 (144)
T ss_pred HHHHhhhhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCC-CHHHHHHHHHHHhcccccCCCceeeHHHHHhh
Confidence 3443345799999999999999999998863211 11122 23446778899999999999999999999753
No 168
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=96.52 E-value=0.0088 Score=55.38 Aligned_cols=91 Identities=21% Similarity=0.329 Sum_probs=59.9
Q ss_pred hHHHHHHHHhHhCCCCCCcccHHHHHHHHHhhhccCcccchHHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhCCCCC
Q 002525 243 FDSRLQTFFDMVDTDADGRITEEEVKEIISLSASANKLSNIQKQAEEYAAMIMEELDPDNAGYIMIHNLETLLLQAPNQS 322 (912)
Q Consensus 243 ~ee~L~~aF~~fDkd~dG~It~eEl~~il~~~~~~~~l~~~~~~~ee~~~~i~~e~D~d~dG~Is~~EF~~~l~~~p~~~ 322 (912)
..++...+|+..|. ++|+|+-++.++++..+ +++ .+.+..|..-.|.|+||+++.+||.-.|.---.-.
T Consensus 8 e~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S----~L~------~~~L~~IW~LaD~~~dG~L~~~EF~iAm~Li~~~~ 76 (104)
T PF12763_consen 8 EKQKYDQIFQSLDP-QDGKISGDQAREFFMKS----GLP------RDVLAQIWNLADIDNDGKLDFEEFAIAMHLINRKL 76 (104)
T ss_dssp HHHHHHHHHHCTSS-STTEEEHHHHHHHHHHT----TSS------HHHHHHHHHHH-SSSSSEEEHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC-CCCeEeHHHHHHHHHHc----CCC------HHHHHHHHhhhcCCCCCcCCHHHHHHHHHHHHHHh
Confidence 45678889999984 68999999999988632 344 46677799999999999999999998875310000
Q ss_pred cccCcccchhhhhhhccCCCCCCC
Q 002525 323 VRVGDSRILSQMLSQKLKPTQENN 346 (912)
Q Consensus 323 ~~~~~~~~~~~~~~~~l~~~~~~~ 346 (912)
.+....+...+...|.|+-.++
T Consensus 77 --~~~~~~lP~~LP~~L~p~s~~~ 98 (104)
T PF12763_consen 77 --NGNGKPLPSSLPPSLIPPSKRP 98 (104)
T ss_dssp --HHTTS---SSSSGGGSSSCG--
T ss_pred --cCCCCCCchhcCHHHCCCCccc
Confidence 0112235555666666655444
No 169
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=96.38 E-value=0.0049 Score=57.09 Aligned_cols=64 Identities=9% Similarity=0.102 Sum_probs=39.4
Q ss_pred ChHHHHHHHHHHcCCCCCceeehhhhcccccCCCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHH
Q 002525 169 GWPAVEKRYNELAITTSDGLLHCSMFGECIGMNKESKEFAGELFRGLCRKHNISGDSINKAQLKEFWDQ 237 (912)
Q Consensus 169 ~~~~l~~~F~~ld~~d~dG~I~~~ef~~~lg~~~~~~~~~~~lf~~l~d~d~~~~G~Id~~EF~~~~~~ 237 (912)
|.....+.|+.++. .+|.|+-++.+..+....-..+.+.+|++ +.|.|++ |.+|++||..+|..
T Consensus 8 e~~~y~~~F~~l~~--~~g~isg~~a~~~f~~S~L~~~~L~~IW~-LaD~~~d--G~L~~~EF~iAm~L 71 (104)
T PF12763_consen 8 EKQKYDQIFQSLDP--QDGKISGDQAREFFMKSGLPRDVLAQIWN-LADIDND--GKLDFEEFAIAMHL 71 (104)
T ss_dssp HHHHHHHHHHCTSS--STTEEEHHHHHHHHHHTTSSHHHHHHHHH-HH-SSSS--SEEEHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC--CCCeEeHHHHHHHHHHcCCCHHHHHHHHh-hhcCCCC--CcCCHHHHHHHHHH
Confidence 56677777777764 56777777776666211123455667776 5666555 77777777776643
No 170
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=96.26 E-value=0.011 Score=46.73 Aligned_cols=48 Identities=21% Similarity=0.338 Sum_probs=39.4
Q ss_pred cccHHHHHHHHHHhcCCChHHHHHHHHhHhCCCCCCcccHHHHHHHHH
Q 002525 225 SINKAQLKEFWDQISDESFDSRLQTFFDMVDTDADGRITEEEVKEIIS 272 (912)
Q Consensus 225 ~Id~~EF~~~~~~~~~~~~ee~L~~aF~~fDkd~dG~It~eEl~~il~ 272 (912)
+++|.|....+..++-...++....+|+.+|++++|++..+|+.++.+
T Consensus 1 kmsf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~ 48 (51)
T PF14788_consen 1 KMSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYK 48 (51)
T ss_dssp EBEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHH
Confidence 368899999998888888899999999999999999999999999875
No 171
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=96.26 E-value=0.0024 Score=60.19 Aligned_cols=73 Identities=18% Similarity=0.139 Sum_probs=47.3
Q ss_pred HHHHHHHhcCCChHHHHHHHHhHhCCCCCCcccHHHHHHHHHhhhccCcccchHHHHHHHHHHHhhhcCCCCCCcccHHH
Q 002525 231 LKEFWDQISDESFDSRLQTFFDMVDTDADGRITEEEVKEIISLSASANKLSNIQKQAEEYAAMIMEELDPDNAGYIMIHN 310 (912)
Q Consensus 231 F~~~~~~~~~~~~ee~L~~aF~~fDkd~dG~It~eEl~~il~~~~~~~~l~~~~~~~ee~~~~i~~e~D~d~dG~Is~~E 310 (912)
............-+..+...|..+|.|+||.++..||+.+.... .+. +.-+...+...|.|+||.||+.|
T Consensus 40 ~~~~~~~~~~~~~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l---~~~-------e~C~~~F~~~CD~n~d~~Is~~E 109 (113)
T PF10591_consen 40 LLKRDESSSYSECKRVVHWKFCQLDRNKDGVLDRSELKPLRRPL---MPP-------EHCARPFFRSCDVNKDGKISLDE 109 (113)
T ss_dssp HHHHHHHHTGGGGHHHHHHHHHHH--T-SSEE-TTTTGGGGSTT---STT-------GGGHHHHHHHH-TT-SSSEEHHH
T ss_pred ccccccccchhhhhhhhhhhHhhhcCCCCCccCHHHHHHHHHHH---hhh-------HHHHHHHHHHcCCCCCCCCCHHH
Confidence 33333333444556779999999999999999999998876421 111 22345589999999999999999
Q ss_pred HHH
Q 002525 311 LET 313 (912)
Q Consensus 311 F~~ 313 (912)
+..
T Consensus 110 W~~ 112 (113)
T PF10591_consen 110 WCN 112 (113)
T ss_dssp HHH
T ss_pred Hcc
Confidence 864
No 172
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=96.14 E-value=0.013 Score=52.70 Aligned_cols=61 Identities=5% Similarity=0.051 Sum_probs=30.9
Q ss_pred hHHHHHHHHHHcCCCCCceeehhhhcccc--------cCCCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q 002525 170 WPAVEKRYNELAITTSDGLLHCSMFGECI--------GMNKESKEFAGELFRGLCRKHNISGDSINKAQLKEFWD 236 (912)
Q Consensus 170 ~~~l~~~F~~ld~~d~dG~I~~~ef~~~l--------g~~~~~~~~~~~lf~~l~d~d~~~~G~Id~~EF~~~~~ 236 (912)
+..+-..|.+++. ++++|++.||++.+ +-. .....++++|+.+|. ++ +|.|||+||...+.
T Consensus 7 i~~lI~~FhkYaG--~~~tLsk~Elk~Ll~~Elp~~l~~~-~d~~~vd~im~~LD~-n~--Dg~vdF~EF~~Lv~ 75 (91)
T cd05024 7 MEKMMLTFHKFAG--EKNYLNRDDLQKLMEKEFSEFLKNQ-NDPMAVDKIMKDLDD-CR--DGKVGFQSFFSLIA 75 (91)
T ss_pred HHHHHHHHHHHcC--CCCcCCHHHHHHHHHHHhHHHHcCC-CCHHHHHHHHHHhCC-CC--CCcCcHHHHHHHHH
Confidence 3445566666665 45567777766665 111 133445555553322 12 25555555555443
No 173
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=96.12 E-value=0.01 Score=67.69 Aligned_cols=53 Identities=28% Similarity=0.397 Sum_probs=45.2
Q ss_pred CHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhcCCChHHHHHHHHhHhCCCCCCcccHHHHHHHHH
Q 002525 204 SKEFAGELFRGLCRKHNISGDSINKAQLKEFWDQISDESFDSRLQTFFDMVDTDADGRITEEEVKEIIS 272 (912)
Q Consensus 204 ~~~~~~~lf~~l~d~d~~~~G~Id~~EF~~~~~~~~~~~~ee~L~~aF~~fDkd~dG~It~eEl~~il~ 272 (912)
.+..+..+|. +.|.+++ |.|+.+||.. +..+|+.+|.|+||.|+.+||+.++.
T Consensus 332 ~~~~l~~aF~-~~D~dgd--G~Is~~E~~~-------------~~~~F~~~D~d~DG~Is~eEf~~~~~ 384 (391)
T PRK12309 332 FTHAAQEIFR-LYDLDGD--GFITREEWLG-------------SDAVFDALDLNHDGKITPEEMRAGLG 384 (391)
T ss_pred hhHHHHHHHH-HhCCCCC--CcCcHHHHHH-------------HHHHHHHhCCCCCCCCcHHHHHHHHH
Confidence 5667889999 4666666 9999999952 57889999999999999999999886
No 174
>COG2375 ViuB Siderophore-interacting protein [Inorganic ion transport and metabolism]
Probab=96.03 E-value=1 Score=48.53 Aligned_cols=122 Identities=12% Similarity=0.114 Sum_probs=83.7
Q ss_pred cccceEEEEEEEecCCEEEEEEecCCCcc----ccCccEEEEEeCCCC-C-------------------Ccccceeeeec
Q 002525 602 SIEPVKILKVAVYPGNVLALHMSKPQGFK----YKSGQYMFVNCAAVS-P-------------------FEWHPFSITSS 657 (912)
Q Consensus 602 ~~~~~~i~~v~~~~~~v~~l~~~~p~~~~----~~pGQyv~l~~p~~s-~-------------------~e~HPFTIaS~ 657 (912)
..+.++|+.++.++++.++++|..+.... ...+|||.|.+|..+ . .-.++|||.+.
T Consensus 16 ~~~~~~V~~~~~lsP~m~Rv~~~g~~l~~f~~~~~~d~~ikL~fp~~~~~~~~~~~~~~~~~~~~~~~r~~~R~YTiR~~ 95 (265)
T COG2375 16 RLHEATVTRVTQLSPHMVRVVLGGEGLAGFASLGFGDQHIKLFFPPPDGDPPRLPVLEERGAVPPGAQRPPQRTYTIRAV 95 (265)
T ss_pred cceEEEEEEEEecCCCeEEEEEecccccccccccCCCceeEEEecCccCCCCCCcccccccccCccccCCCcccceeeee
Confidence 34568899999999999999999886433 344559999998643 1 12688999755
Q ss_pred -CCCCe--EEEEEE-ecCcchHHHHHHHhhccCCCCCCCCccchhhhccCCCCCCeEEEeCCCCCCCCCCCCCCEEEEEE
Q 002525 658 -PGDDY--LSVHIR-TLGDWTRQLKTVFSEVCQPAPAGKSGLLRAERENNSRGFPKILIDGPYGAPAQDYKKYDVVLLVG 733 (912)
Q Consensus 658 -p~~~~--l~l~Ir-~~G~~T~~L~~~~~~~~~~~~~g~sg~~~~~~~~~~~~~~~v~IdGPYG~~~~~~~~y~~vllVa 733 (912)
++... +.|++= ..|--++.-.+ .+.+..+.|-||-|.... ...++..+|+|
T Consensus 96 d~~~~e~~vDfVlH~~~gpas~WA~~------------------------a~~GD~l~i~GP~g~~~p-~~~~~~~lLig 150 (265)
T COG2375 96 DAAAGELDVDFVLHGEGGPASRWART------------------------AQPGDTLTIMGPRGSLVP-PEAADWYLLIG 150 (265)
T ss_pred cccccEEEEEEEEcCCCCcchhhHhh------------------------CCCCCEEEEeCCCCCCCC-CCCcceEEEec
Confidence 33333 333333 22222221111 136889999999998543 45788999999
Q ss_pred cCcchhhHHHHHHHH
Q 002525 734 LGIGATPMISIVKDI 748 (912)
Q Consensus 734 gGiGITP~lsiL~~l 748 (912)
==+++..+..||.++
T Consensus 151 DetAlPAIa~iLE~l 165 (265)
T COG2375 151 DETALPAIARILETL 165 (265)
T ss_pred cccchHHHHHHHHhC
Confidence 889998888888876
No 175
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.00 E-value=0.053 Score=66.29 Aligned_cols=79 Identities=13% Similarity=0.230 Sum_probs=55.1
Q ss_pred CceeehhhhcccccCCCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHh---c-----CCChHHHHHHHHhHhCCC
Q 002525 186 DGLLHCSMFGECIGMNKESKEFAGELFRGLCRKHNISGDSINKAQLKEFWDQI---S-----DESFDSRLQTFFDMVDTD 257 (912)
Q Consensus 186 dG~I~~~ef~~~lg~~~~~~~~~~~lf~~l~d~d~~~~G~Id~~EF~~~~~~~---~-----~~~~ee~L~~aF~~fDkd 257 (912)
+| |+.+||. ..... .+.-.+-+|+. .|. .+ |.++-+|+.+..+.. . ....++....+|+..|.+
T Consensus 2 ~~-~~~~~~~-~~~~~--~d~~l~~~f~~-~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (646)
T KOG0039|consen 2 EG-ISFQELK-ITDCS--YDDKLQTFFDM-YDK-GD--GKLTEEEVRELIMSSISANWLSLIKKQTEEYAALIMEELDPD 73 (646)
T ss_pred CC-cchhhhc-ccCCC--hhHHHHHHHHH-Hhh-hc--CCccHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhhhcccc
Confidence 56 8889988 32222 34446777773 444 33 899999888876542 1 223355677889999999
Q ss_pred CCCcccHHHHHHHHH
Q 002525 258 ADGRITEEEVKEIIS 272 (912)
Q Consensus 258 ~dG~It~eEl~~il~ 272 (912)
+.|+++.+++..++.
T Consensus 74 ~~~y~~~~~~~~ll~ 88 (646)
T KOG0039|consen 74 HKGYITNEDLEILLL 88 (646)
T ss_pred ccceeeecchhHHHH
Confidence 999999999988775
No 176
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=95.94 E-value=0.017 Score=65.97 Aligned_cols=68 Identities=19% Similarity=0.248 Sum_probs=55.5
Q ss_pred HHHHHHhHhCCCCCCcccHHHHHHHHHhhhccCcccchHHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhCC
Q 002525 246 RLQTFFDMVDTDADGRITEEEVKEIISLSASANKLSNIQKQAEEYAAMIMEELDPDNAGYIMIHNLETLLLQAP 319 (912)
Q Consensus 246 ~L~~aF~~fDkd~dG~It~eEl~~il~~~~~~~~l~~~~~~~ee~~~~i~~e~D~d~dG~Is~~EF~~~l~~~p 319 (912)
.++..|...| |++|+|+..|+.+++.......+ -..++++++++.+.+.|.+|.|+||||..+...-.
T Consensus 20 ~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g-----~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~l~ 87 (627)
T KOG0046|consen 20 ELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLG-----YFVREEIKEILGEVGVDADGRVEFEEFVGIFLNLK 87 (627)
T ss_pred HHHHHHHhhc-CCCCeeehHHhHHHHHHhccccc-----chhHHHHHHHHhccCCCcCCccCHHHHHHHHHhhh
Confidence 4778899999 99999999999999974332221 23477889999999999999999999999877543
No 177
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=95.89 E-value=0.0079 Score=42.71 Aligned_cols=27 Identities=22% Similarity=0.411 Sum_probs=23.3
Q ss_pred HHHHhhhcCCCCCCcccHHHHHHHHHh
Q 002525 291 AAMIMEELDPDNAGYIMIHNLETLLLQ 317 (912)
Q Consensus 291 ~~~i~~e~D~d~dG~Is~~EF~~~l~~ 317 (912)
+..+|+.+|.|+||+|+.+||..+|.+
T Consensus 2 l~~~F~~~D~d~dG~I~~~el~~~l~~ 28 (31)
T PF13405_consen 2 LREAFKMFDKDGDGFIDFEELRAILRK 28 (31)
T ss_dssp HHHHHHHH-TTSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCcHHHHHHHHHH
Confidence 345899999999999999999999984
No 178
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=95.82 E-value=0.021 Score=45.25 Aligned_cols=48 Identities=21% Similarity=0.433 Sum_probs=37.2
Q ss_pred cccHHHHHHHHHhhhccCcccchHHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHH
Q 002525 261 RITEEEVKEIISLSASANKLSNIQKQAEEYAAMIMEELDPDNAGYIMIHNLETLLL 316 (912)
Q Consensus 261 ~It~eEl~~il~~~~~~~~l~~~~~~~ee~~~~i~~e~D~d~dG~Is~~EF~~~l~ 316 (912)
++++.|++.+++..-. .++ ++++..+|+++|.+++|.++-+||+.+..
T Consensus 1 kmsf~Evk~lLk~~NI--~~~------~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~ 48 (51)
T PF14788_consen 1 KMSFKEVKKLLKMMNI--EMD------DEYARQLFQECDKSQSGRLEGEEFEEFYK 48 (51)
T ss_dssp EBEHHHHHHHHHHTT------------HHHHHHHHHHH-SSSSSEBEHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHcc--CcC------HHHHHHHHHHhcccCCCCccHHHHHHHHH
Confidence 4689999999974321 122 78999999999999999999999998765
No 179
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=95.69 E-value=0.018 Score=55.13 Aligned_cols=85 Identities=18% Similarity=0.241 Sum_probs=63.7
Q ss_pred CCCceeehhhhcccc----cCCCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhcCC-ChHHH----HHHHHhHh
Q 002525 184 TSDGLLHCSMFGECI----GMNKESKEFAGELFRGLCRKHNISGDSINKAQLKEFWDQISDE-SFDSR----LQTFFDMV 254 (912)
Q Consensus 184 d~dG~I~~~ef~~~l----g~~~~~~~~~~~lf~~l~d~d~~~~G~Id~~EF~~~~~~~~~~-~~ee~----L~~aF~~f 254 (912)
|++|.++.++|...+ .+.| .+..+.-.|. +.|-|++ +.|-.+++...+..+.+. .++++ +++..+.-
T Consensus 83 DG~GnlsfddFlDmfSV~sE~AP-rdlK~~YAFk-IYDfd~D--~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ekvieEA 158 (189)
T KOG0038|consen 83 DGRGNLSFDDFLDMFSVFSEMAP-RDLKAKYAFK-IYDFDGD--EFIGHDDLEKTLTSLTRDELSDEEVELICEKVIEEA 158 (189)
T ss_pred CCCCcccHHHHHHHHHHHHhhCh-HHhhhhheeE-EeecCCC--CcccHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHh
Confidence 689999999999887 4443 3333555666 4566666 899999998888776432 33333 56677888
Q ss_pred CCCCCCcccHHHHHHHHH
Q 002525 255 DTDADGRITEEEVKEIIS 272 (912)
Q Consensus 255 Dkd~dG~It~eEl~~il~ 272 (912)
|.||||+++..||..++.
T Consensus 159 D~DgDgkl~~~eFe~~i~ 176 (189)
T KOG0038|consen 159 DLDGDGKLSFAEFEHVIL 176 (189)
T ss_pred cCCCCCcccHHHHHHHHH
Confidence 999999999999999985
No 180
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=95.67 E-value=0.034 Score=56.16 Aligned_cols=96 Identities=11% Similarity=0.145 Sum_probs=66.4
Q ss_pred ChHHHHHHHHHHcCCCCCceeehhhhcccc---cCCCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHh--cCCCh
Q 002525 169 GWPAVEKRYNELAITTSDGLLHCSMFGECI---GMNKESKEFAGELFRGLCRKHNISGDSINKAQLKEFWDQI--SDESF 243 (912)
Q Consensus 169 ~~~~l~~~F~~ld~~d~dG~I~~~ef~~~l---g~~~~~~~~~~~lf~~l~d~d~~~~G~Id~~EF~~~~~~~--~~~~~ 243 (912)
+|+.++++|+.+|. +.||+|++.|++..+ |.. .+..-...++.- .|.|.+|+|+|.||+-..... +....
T Consensus 97 qIk~~~~~Fk~yDe-~rDgfIdl~ELK~mmEKLgap-QTHL~lK~mike---Vded~dgklSfreflLIfrkaaagEL~~ 171 (244)
T KOG0041|consen 97 QIKDAESMFKQYDE-DRDGFIDLMELKRMMEKLGAP-QTHLGLKNMIKE---VDEDFDGKLSFREFLLIFRKAAAGELQE 171 (244)
T ss_pred HHHHHHHHHHHhcc-cccccccHHHHHHHHHHhCCc-hhhHHHHHHHHH---hhcccccchhHHHHHHHHHHHhcccccc
Confidence 68889999999999 999999999999886 665 455555666663 333444999999998776543 22333
Q ss_pred HHHHHHHHhH--hCCCCCCcccHHHHHH
Q 002525 244 DSRLQTFFDM--VDTDADGRITEEEVKE 269 (912)
Q Consensus 244 ee~L~~aF~~--fDkd~dG~It~eEl~~ 269 (912)
++.+..+=+. +|...-|.-....|-+
T Consensus 172 ds~~~~LAr~~eVDVskeGV~GAknFFe 199 (244)
T KOG0041|consen 172 DSGLLRLARLSEVDVSKEGVSGAKNFFE 199 (244)
T ss_pred chHHHHHHHhcccchhhhhhhhHHHHHH
Confidence 4445544444 6776666665555544
No 181
>PF14658 EF-hand_9: EF-hand domain
Probab=95.58 E-value=0.036 Score=46.57 Aligned_cols=59 Identities=14% Similarity=0.295 Sum_probs=46.9
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHHHhcC-CChHHHHHHHHhHhCCCCC-CcccHHHHHHHHH
Q 002525 211 LFRGLCRKHNISGDSINKAQLKEFWDQISD-ESFDSRLQTFFDMVDTDAD-GRITEEEVKEIIS 272 (912)
Q Consensus 211 lf~~l~d~d~~~~G~Id~~EF~~~~~~~~~-~~~ee~L~~aF~~fDkd~d-G~It~eEl~~il~ 272 (912)
.|+ ++|.+.. |.|.-.+++.++..... ...|++|+.+.+.+|.++. |.|++++|..+|+
T Consensus 3 ~F~-~fD~~~t--G~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~ 63 (66)
T PF14658_consen 3 AFD-AFDTQKT--GRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMR 63 (66)
T ss_pred chh-hcCCcCC--ceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHH
Confidence 466 3444444 88988888888888776 6778889999999998888 8999998888875
No 182
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=95.15 E-value=0.049 Score=60.85 Aligned_cols=64 Identities=20% Similarity=0.336 Sum_probs=52.7
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHHhc----CCChHHHHHHHHhHhCCCCCCcccHHHHHHHHHhh
Q 002525 208 AGELFRGLCRKHNISGDSINKAQLKEFWDQIS----DESFDSRLQTFFDMVDTDADGRITEEEVKEIISLS 274 (912)
Q Consensus 208 ~~~lf~~l~d~d~~~~G~Id~~EF~~~~~~~~----~~~~ee~L~~aF~~fDkd~dG~It~eEl~~il~~~ 274 (912)
.+.+|.++ |.|++ |.|+.+||.++|..+. ..-.++.+-..-+++|.|+||.|+.+||.+.+.+.
T Consensus 549 LetiF~~i-D~D~S--G~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFrlv 616 (631)
T KOG0377|consen 549 LETIFNII-DADNS--GEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFRLV 616 (631)
T ss_pred HHHHHHHh-ccCCC--CceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHhhh
Confidence 67899955 44444 9999999999998753 34567888888999999999999999999988753
No 183
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=95.00 E-value=0.076 Score=60.21 Aligned_cols=95 Identities=16% Similarity=0.206 Sum_probs=60.4
Q ss_pred HHHHHHcCCCCCceeehhhhcccccCCCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhc---------------
Q 002525 175 KRYNELAITTSDGLLHCSMFGECIGMNKESKEFAGELFRGLCRKHNISGDSINKAQLKEFWDQIS--------------- 239 (912)
Q Consensus 175 ~~F~~ld~~d~dG~I~~~ef~~~lg~~~~~~~~~~~lf~~l~d~d~~~~G~Id~~EF~~~~~~~~--------------- 239 (912)
++-..+++..+||.|+.+||+..=...-..+......|+ ++|+.++ |.++++++.+...+..
T Consensus 77 ~Lla~iaD~tKDglisf~eF~afe~~lC~pDal~~~aFq-lFDr~~~--~~vs~~~~~~if~~t~l~~~~~f~~d~efI~ 153 (694)
T KOG0751|consen 77 RLLASIADQTKDGLISFQEFRAFESVLCAPDALFEVAFQ-LFDRLGN--GEVSFEDVADIFGQTNLHHHIPFNWDSEFIK 153 (694)
T ss_pred HHHHhhhhhcccccccHHHHHHHHhhccCchHHHHHHHH-HhcccCC--CceehHHHHHHHhccccccCCCccCCcchHH
Confidence 333344333567777777776543222112334556677 4555555 7777777777654421
Q ss_pred --------------------CCChHHHHHHHHhHhCCCCCCcccHHHHHHHHH
Q 002525 240 --------------------DESFDSRLQTFFDMVDTDADGRITEEEVKEIIS 272 (912)
Q Consensus 240 --------------------~~~~ee~L~~aF~~fDkd~dG~It~eEl~~il~ 272 (912)
..-.+|+-+++|+..|+.++|+||.-+++.+|.
T Consensus 154 ~~Fg~~~~r~~ny~~f~Q~lh~~~~E~~~qafr~~d~~~ng~is~Ldfq~imv 206 (694)
T KOG0751|consen 154 LHFGDIRKRHLNYAEFTQFLHEFQLEHAEQAFREKDKAKNGFISVLDFQDIMV 206 (694)
T ss_pred HHhhhHHHHhccHHHHHHHHHHHHHHHHHHHHHHhcccCCCeeeeechHhhhh
Confidence 001245678999999999999999999999985
No 184
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=94.50 E-value=0.27 Score=59.13 Aligned_cols=161 Identities=12% Similarity=0.224 Sum_probs=109.8
Q ss_pred cchHHHHHhhhhhhhhhcc---CCCCCChHHHHHHHHHHcCCCCCceeehhhhccccc---CCCCCHHHHHHHHHHHHhh
Q 002525 145 TKSAAAHALKGLKFITTKT---GAAGNGWPAVEKRYNELAITTSDGLLHCSMFGECIG---MNKESKEFAGELFRGLCRK 218 (912)
Q Consensus 145 ~~s~~~~al~~L~~i~~~~---~~~~~~~~~l~~~F~~ld~~d~dG~I~~~ef~~~lg---~~~~~~~~~~~lf~~l~d~ 218 (912)
++..++.-..+|+.+.... ...++.-.++...|+..|+ +++|.++..+...++. +. -....+..+|...
T Consensus 107 s~~~a~~wV~gl~~l~s~~~~~~~~~~~~~wi~~~~~~ad~-~~~~~~~~~~~~~~~~~~n~~-l~~~~~~~~f~e~--- 181 (746)
T KOG0169|consen 107 SKEDANIWVSGLRKLISRSKSMRQRSRREHWIHSIFQEADK-NKNGHMSFDEVLDLLKQLNVQ-LSESKARRLFKES--- 181 (746)
T ss_pred CHHHHHHHhhhHHHHHhccchhhhcchHHHHHHHHHHHHcc-ccccccchhhHHHHHHHHHHh-hhHHHHHHHHHHH---
Confidence 4445555566666654322 2222345779999999999 9999999999888872 22 1344567777754
Q ss_pred CCCCCCcccHHHHHHHHHHhcCCChHHHHHHHHhHhCCCCCCcccHHHHHHHHHhhhccCcccchHHHHHHHHHHHhhhc
Q 002525 219 HNISGDSINKAQLKEFWDQISDESFDSRLQTFFDMVDTDADGRITEEEVKEIISLSASANKLSNIQKQAEEYAAMIMEEL 298 (912)
Q Consensus 219 d~~~~G~Id~~EF~~~~~~~~~~~~ee~L~~aF~~fDkd~dG~It~eEl~~il~~~~~~~~l~~~~~~~ee~~~~i~~e~ 298 (912)
+..+.+++..++|..+-....... .+..+|..+=.+ .++.+.++|.+++.......... .+.+.+|++++
T Consensus 182 ~~~~~~k~~~~~~~~~~~~~~~rp---ev~~~f~~~s~~-~~~ls~~~L~~Fl~~~q~e~~~~------~~~ae~ii~~~ 251 (746)
T KOG0169|consen 182 DNSQTGKLEEEEFVKFRKELTKRP---EVYFLFVQYSHG-KEYLSTDDLLRFLEEEQGEDGAT------LDEAEEIIERY 251 (746)
T ss_pred HhhccceehHHHHHHHHHhhccCc---hHHHHHHHHhCC-CCccCHHHHHHHHHHhccccccc------HHHHHHHHHHh
Confidence 233349999999999887765544 678888777545 99999999999998653333332 34455566665
Q ss_pred CCC----CCCcccHHHHHHHHHhCCC
Q 002525 299 DPD----NAGYIMIHNLETLLLQAPN 320 (912)
Q Consensus 299 D~d----~dG~Is~~EF~~~l~~~p~ 320 (912)
... ..+.+++|.|...|.....
T Consensus 252 e~~k~~~~~~~l~ldgF~~yL~S~~~ 277 (746)
T KOG0169|consen 252 EPSKEFRRHGLLSLDGFTRYLFSPDC 277 (746)
T ss_pred hhhhhccccceecHHHHHHHhcCccC
Confidence 443 3466999999999986543
No 185
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=94.38 E-value=0.042 Score=36.66 Aligned_cols=26 Identities=38% Similarity=0.714 Sum_probs=23.6
Q ss_pred HHHHHhHhCCCCCCcccHHHHHHHHH
Q 002525 247 LQTFFDMVDTDADGRITEEEVKEIIS 272 (912)
Q Consensus 247 L~~aF~~fDkd~dG~It~eEl~~il~ 272 (912)
++.+|+.+|.|++|.|+.+||..++.
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~ 27 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLK 27 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHH
Confidence 67899999999999999999998874
No 186
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=93.89 E-value=0.07 Score=35.56 Aligned_cols=26 Identities=23% Similarity=0.304 Sum_probs=23.4
Q ss_pred HHHhhhcCCCCCCcccHHHHHHHHHh
Q 002525 292 AMIMEELDPDNAGYIMIHNLETLLLQ 317 (912)
Q Consensus 292 ~~i~~e~D~d~dG~Is~~EF~~~l~~ 317 (912)
..+|+.+|.|++|.|+++||..++..
T Consensus 3 ~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 3 KEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 45899999999999999999999874
No 187
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=93.44 E-value=0.29 Score=46.13 Aligned_cols=59 Identities=20% Similarity=0.235 Sum_probs=35.6
Q ss_pred ChHHHHHHHHHHcCCCCCceeehhhhccccc--CCCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHH
Q 002525 169 GWPAVEKRYNELAITTSDGLLHCSMFGECIG--MNKESKEFAGELFRGLCRKHNISGDSINKAQLKE 233 (912)
Q Consensus 169 ~~~~l~~~F~~ld~~d~dG~I~~~ef~~~lg--~~~~~~~~~~~lf~~l~d~d~~~~G~Id~~EF~~ 233 (912)
....+.=.|..+|. |+||.|+..|+..... .+ .+.=+...|+ ..|.|++ |.|+..|+..
T Consensus 52 ~~~~~~W~F~~LD~-n~d~~L~~~El~~l~~~l~~--~e~C~~~F~~-~CD~n~d--~~Is~~EW~~ 112 (113)
T PF10591_consen 52 CKRVVHWKFCQLDR-NKDGVLDRSELKPLRRPLMP--PEHCARPFFR-SCDVNKD--GKISLDEWCN 112 (113)
T ss_dssp GHHHHHHHHHHH---T-SSEE-TTTTGGGGSTTST--TGGGHHHHHH-HH-TT-S--SSEEHHHHHH
T ss_pred hhhhhhhhHhhhcC-CCCCccCHHHHHHHHHHHhh--hHHHHHHHHH-HcCCCCC--CCCCHHHHcc
Confidence 34667888999999 9999999999988765 22 2222455555 4555554 7777777653
No 188
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=93.20 E-value=0.29 Score=62.02 Aligned_cols=83 Identities=17% Similarity=0.298 Sum_probs=50.0
Q ss_pred CcccHHHHHHHHHHhcCCC-------hHHHHHHHHhHhCCCCCCcccHHHHHHHHHhhhccCcccchHHHHHHHHHHHhh
Q 002525 224 DSINKAQLKEFWDQISDES-------FDSRLQTFFDMVDTDADGRITEEEVKEIISLSASANKLSNIQKQAEEYAAMIME 296 (912)
Q Consensus 224 G~Id~~EF~~~~~~~~~~~-------~ee~L~~aF~~fDkd~dG~It~eEl~~il~~~~~~~~l~~~~~~~ee~~~~i~~ 296 (912)
|.+|+++|..++..++... ++-.++.+.+.+|.+.+|+|+..|...+|-.....|-++ .+.+...|+
T Consensus 2268 G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~~ETeNI~s------~~eIE~Afr 2341 (2399)
T KOG0040|consen 2268 GRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMISKETENILS------SEEIEDAFR 2341 (2399)
T ss_pred cCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHhcccccccc------hHHHHHHHH
Confidence 7777777777776654322 233677777777777777777777766664322223222 335555677
Q ss_pred hcCCCCCCcccHHHHHH
Q 002525 297 ELDPDNAGYIMIHNLET 313 (912)
Q Consensus 297 e~D~d~dG~Is~~EF~~ 313 (912)
.+|. +.-||+-++...
T Consensus 2342 aL~a-~~~yvtke~~~~ 2357 (2399)
T KOG0040|consen 2342 ALDA-GKPYVTKEELYQ 2357 (2399)
T ss_pred Hhhc-CCccccHHHHHh
Confidence 7776 556666665543
No 189
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=92.93 E-value=0.2 Score=53.76 Aligned_cols=91 Identities=21% Similarity=0.389 Sum_probs=62.1
Q ss_pred cHHHHHHHHHHhcCCChH-HHHHHHHhHhCCCCCCcccHHHHHHHHHhhhc-----cCcccchHHHHHH---HHHHHhhh
Q 002525 227 NKAQLKEFWDQISDESFD-SRLQTFFDMVDTDADGRITEEEVKEIISLSAS-----ANKLSNIQKQAEE---YAAMIMEE 297 (912)
Q Consensus 227 d~~EF~~~~~~~~~~~~e-e~L~~aF~~fDkd~dG~It~eEl~~il~~~~~-----~~~l~~~~~~~ee---~~~~i~~e 297 (912)
+.+.+.+.|.-......+ =.=+.+|.+.|.|+||+++..||..++..... .|..+...+..++ +-..+|++
T Consensus 225 SkdQLkEVWEE~DgLdpn~fdPKTFF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~ 304 (442)
T KOG3866|consen 225 SKDQLKEVWEESDGLDPNQFDPKTFFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQ 304 (442)
T ss_pred cHHHHHHHHHHhcCCCcccCCcchheeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHh
Confidence 466777888764333322 23468999999999999999999988864221 2222222232333 23457999
Q ss_pred cCCCCCCcccHHHHHHHHHh
Q 002525 298 LDPDNAGYIMIHNLETLLLQ 317 (912)
Q Consensus 298 ~D~d~dG~Is~~EF~~~l~~ 317 (912)
+|.|.|--||++||..--.+
T Consensus 305 vDtNqDRlvtleEFL~~t~~ 324 (442)
T KOG3866|consen 305 VDTNQDRLVTLEEFLNDTDN 324 (442)
T ss_pred cccchhhhhhHHHHHhhhhh
Confidence 99999999999999875543
No 190
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.71 E-value=0.48 Score=56.57 Aligned_cols=128 Identities=12% Similarity=0.223 Sum_probs=96.3
Q ss_pred hHHHHHHHHHHcCCCCCceeehhhhcccc---cCCCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhc-------
Q 002525 170 WPAVEKRYNELAITTSDGLLHCSMFGECI---GMNKESKEFAGELFRGLCRKHNISGDSINKAQLKEFWDQIS------- 239 (912)
Q Consensus 170 ~~~l~~~F~~ld~~d~dG~I~~~ef~~~l---g~~~~~~~~~~~lf~~l~d~d~~~~G~Id~~EF~~~~~~~~------- 239 (912)
-..-.++|..|.. ..|+|+-++-+-++ |+. ...+.+|.. |.|.|.| |++|..||..+|..+.
T Consensus 15 r~K~~~qF~~Lkp--~~gfitg~qArnfflqS~LP---~~VLaqIWA-LsDldkD--Grmdi~EfSIAmkLi~lkLqG~~ 86 (1118)
T KOG1029|consen 15 RQKHDAQFGQLKP--GQGFITGDQARNFFLQSGLP---TPVLAQIWA-LSDLDKD--GRMDIREFSIAMKLIKLKLQGIQ 86 (1118)
T ss_pred HHHHHHHHhccCC--CCCccchHhhhhhHHhcCCC---hHHHHHHHH-hhhcCcc--ccchHHHHHHHHHHHHHHhcCCc
Confidence 3445667888875 78999988877766 443 344677887 7888777 9999999999886532
Q ss_pred -------------------------------------------------------------------CC-----------
Q 002525 240 -------------------------------------------------------------------DE----------- 241 (912)
Q Consensus 240 -------------------------------------------------------------------~~----------- 241 (912)
.+
T Consensus 87 lP~~LPPsll~~~~~~~p~~~p~fg~Gsls~~qpL~~a~p~~m~~s~v~~~Pv~vatvpS~~~~sl~nGplp~~~~spl~ 166 (1118)
T KOG1029|consen 87 LPPVLPPSLLKQPPRNAPSTWPGFGMGSLSYSQPLPPAAPRRMSSSPVVGPPVSVATVPSSRHNSLPNGPLPPTSNSPLP 166 (1118)
T ss_pred CCCCCChHHhccCCcCCCCCCCccCCCCcCcCCCCCcccccccCCCccCCCCcccccCCCCCCCCCCCCCCCCCCCCCCC
Confidence 00
Q ss_pred -------------------------ChHHHHHHHHhHhCCCCCCcccHHHHHHHHHhhhccCcccchHHHHHHHHHHHhh
Q 002525 242 -------------------------SFDSRLQTFFDMVDTDADGRITEEEVKEIISLSASANKLSNIQKQAEEYAAMIME 296 (912)
Q Consensus 242 -------------------------~~ee~L~~aF~~fDkd~dG~It~eEl~~il~~~~~~~~l~~~~~~~ee~~~~i~~ 296 (912)
...-+.+..|+..|+..+|++|-..-+.+|..+. |+ ...++.|-.
T Consensus 167 ~~ss~se~~~~~~s~~q~~eWAVp~~~klKY~QlFNa~DktrsG~Lsg~qaR~aL~qS~----Lp------q~~LA~IW~ 236 (1118)
T KOG1029|consen 167 HDSSVSEGRPSIESVNQLEEWAVPQHNKLKYRQLFNALDKTRSGYLSGQQARSALGQSG----LP------QNQLAHIWT 236 (1118)
T ss_pred CCcchhhcCccchhhhhhhhccccchhhhHHHHHhhhcccccccccccHHHHHHHHhcC----Cc------hhhHhhhee
Confidence 0122578899999999999999999999986432 33 234566888
Q ss_pred hcCCCCCCcccHHHHHHHH
Q 002525 297 ELDPDNAGYIMIHNLETLL 315 (912)
Q Consensus 297 e~D~d~dG~Is~~EF~~~l 315 (912)
-.|.|+||.++-|||.-.|
T Consensus 237 LsDvd~DGkL~~dEfilam 255 (1118)
T KOG1029|consen 237 LSDVDGDGKLSADEFILAM 255 (1118)
T ss_pred eeccCCCCcccHHHHHHHH
Confidence 8999999999999998765
No 191
>PF08021 FAD_binding_9: Siderophore-interacting FAD-binding domain; InterPro: IPR013113 Proteins in this entry are siderophore-interacting FAD-binding proteins. This entry includes the vibriobactin utilization protein ViuB, which is involved in the removal of iron from iron-vibriobactin complexes, as well as several hypothetical proteins.; PDB: 2GPJ_A.
Probab=91.66 E-value=1.2 Score=42.27 Aligned_cols=89 Identities=13% Similarity=0.198 Sum_probs=51.3
Q ss_pred EEEEEEEecCCEEEEEEecCCC--cc-ccCccEEEEEeCCCCCC---------------------cccceeeeec-CCCC
Q 002525 607 KILKVAVYPGNVLALHMSKPQG--FK-YKSGQYMFVNCAAVSPF---------------------EWHPFSITSS-PGDD 661 (912)
Q Consensus 607 ~i~~v~~~~~~v~~l~~~~p~~--~~-~~pGQyv~l~~p~~s~~---------------------e~HPFTIaS~-p~~~ 661 (912)
+|+.++.++++.++|++..+.- +. ..||||+.|.+|....- ..+.|||-+. |+.+
T Consensus 1 ~V~~~~~ltP~~~Rv~l~g~~l~~~~~~~~d~~ikL~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~R~YTvR~~d~~~~ 80 (117)
T PF08021_consen 1 TVVRVERLTPHMRRVTLGGEDLAGFPSWGPDQHIKLFFPPPGGDPPLPPPLDEGGYRWPPDEQRPVMRTYTVRRFDPETG 80 (117)
T ss_dssp EEEEEEEEETTEEEEEEESGGGTT--S--TT-EEEEEE--TTS----------------------EEEEEE--EEETT--
T ss_pred CEEEEEECCCCEEEEEEECCCcccCccCCCCcEEEEEeCCCCCCccccccccccccccccccCCCCCCCcCEeeEcCCCC
Confidence 4778899999999999998753 33 46999999999875421 3577999876 5556
Q ss_pred eEEEEEEecCc---chHHHHHHHhhccCCCCCCCCccchhhhccCCCCCCeEEEeCCCCCC
Q 002525 662 YLSVHIRTLGD---WTRQLKTVFSEVCQPAPAGKSGLLRAERENNSRGFPKILIDGPYGAP 719 (912)
Q Consensus 662 ~l~l~Ir~~G~---~T~~L~~~~~~~~~~~~~g~sg~~~~~~~~~~~~~~~v~IdGPYG~~ 719 (912)
.+.|-+-..|+ -++..... ..+..+.|-||-|.+
T Consensus 81 ~l~iDfv~Hg~~Gpas~WA~~A------------------------~pGd~v~v~gP~g~~ 117 (117)
T PF08021_consen 81 ELDIDFVLHGDEGPASRWARSA------------------------RPGDRVGVTGPRGSF 117 (117)
T ss_dssp EEEEEEE--SS--HHHHHHHH--------------------------TT-EEEEEEEE---
T ss_pred EEEEEEEECCCCCchHHHHhhC------------------------CCCCEEEEeCCCCCC
Confidence 77776655554 33333221 257899999998753
No 192
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=91.32 E-value=0.71 Score=52.64 Aligned_cols=135 Identities=19% Similarity=0.258 Sum_probs=85.1
Q ss_pred HHHHHHHcCCCCCceeehhhhcccc--cCCCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHh--------cCCCh
Q 002525 174 EKRYNELAITTSDGLLHCSMFGECI--GMNKESKEFAGELFRGLCRKHNISGDSINKAQLKEFWDQI--------SDESF 243 (912)
Q Consensus 174 ~~~F~~ld~~d~dG~I~~~ef~~~l--g~~~~~~~~~~~lf~~l~d~d~~~~G~Id~~EF~~~~~~~--------~~~~~ 243 (912)
...|.++++ |..|.|+...|...- +.. -....+.+++..+...+. +.+.-++|...+..+ .+..+
T Consensus 142 ~~~f~k~~~-d~~g~it~~~Fi~~~~~~~~-l~~t~~~~~v~~l~~~~~---~yl~q~df~~~Lqeli~Thpl~~l~~~p 216 (493)
T KOG2562|consen 142 ASTFRKIDG-DDTGHITRDKFINYWMRGLM-LTHTRLEQFVNLLIQAGC---SYLRQDDFKPYLQELIATHPLEFLDEEP 216 (493)
T ss_pred hhhhhhhcc-CcCCceeHHHHHHHHHhhhh-HHHHHHHHHHHHHhccCc---cceeccccHHHHHHHHhcCCchhhccCh
Confidence 567999998 899999999998775 333 244557778886544433 677666666655432 11222
Q ss_pred H-------HHHHHHHhHhCCCCCCcccHHHHHHHHHh--hhccCcccchHHHHH-----HHHHHH---hhhcCCCCCCcc
Q 002525 244 D-------SRLQTFFDMVDTDADGRITEEEVKEIISL--SASANKLSNIQKQAE-----EYAAMI---MEELDPDNAGYI 306 (912)
Q Consensus 244 e-------e~L~~aF~~fDkd~dG~It~eEl~~il~~--~~~~~~l~~~~~~~e-----e~~~~i---~~e~D~d~dG~I 306 (912)
+ --++.+|=.+|.-++|+|+..|++.-..+ .........+ .+.. +....| |-++|.|.||.|
T Consensus 217 Ef~~~Y~~tvi~rIFy~~nrs~tG~iti~el~~snll~~l~~l~eEed~-nq~~~~FS~e~f~viy~kFweLD~Dhd~li 295 (493)
T KOG2562|consen 217 EFQERYAETVIQRIFYYLNRSRTGRITIQELLRSNLLDALLELDEEEDI-NQVTRYFSYEHFYVIYCKFWELDTDHDGLI 295 (493)
T ss_pred hHHHHHHHHHhhhhheeeCCccCCceeHHHHHHhHHHHHHHHHHHHhhh-hhhhhheeHHHHHHHHHHHhhhcccccccc
Confidence 2 23788899999999999999998753321 0000000000 0111 112223 789999999999
Q ss_pred cHHHHHHH
Q 002525 307 MIHNLETL 314 (912)
Q Consensus 307 s~~EF~~~ 314 (912)
+-+++..-
T Consensus 296 dk~~L~ry 303 (493)
T KOG2562|consen 296 DKEDLKRY 303 (493)
T ss_pred CHHHHHHH
Confidence 99987763
No 193
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.42 E-value=0.33 Score=44.89 Aligned_cols=59 Identities=12% Similarity=0.105 Sum_probs=40.8
Q ss_pred HHHHHHcCCCCCceeehhhhcccc---------cCC--C-CCHHHHHHHHHH-HHhhCCCCCCcccHHHHHHH
Q 002525 175 KRYNELAITTSDGLLHCSMFGECI---------GMN--K-ESKEFAGELFRG-LCRKHNISGDSINKAQLKEF 234 (912)
Q Consensus 175 ~~F~~ld~~d~dG~I~~~ef~~~l---------g~~--~-~~~~~~~~lf~~-l~d~d~~~~G~Id~~EF~~~ 234 (912)
.-|+..|- |+||.|+=-|+.+++ |.. | .++...+.+.+. ++|+|.+++|.|||.||+..
T Consensus 71 HYF~MHDl-dknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 71 HYFSMHDL-DKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKR 142 (144)
T ss_pred hhhhhhcc-CcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhh
Confidence 45888787 899999988888877 221 0 134455566654 45555566799999999874
No 194
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=89.86 E-value=0.59 Score=41.19 Aligned_cols=67 Identities=18% Similarity=0.425 Sum_probs=45.6
Q ss_pred HHHHHHhHhCCCCCCcccHHHHHHHHHhhhccCcccchHHHHHHHHHHHhhhcCCC----CCCcccHHHHHHHHHhCC
Q 002525 246 RLQTFFDMVDTDADGRITEEEVKEIISLSASANKLSNIQKQAEEYAAMIMEELDPD----NAGYIMIHNLETLLLQAP 319 (912)
Q Consensus 246 ~L~~aF~~fDkd~dG~It~eEl~~il~~~~~~~~l~~~~~~~ee~~~~i~~e~D~d----~dG~Is~~EF~~~l~~~p 319 (912)
+++.+|+.+-. +.+.+|.++|.++|...-....++ ++.+..+|+.+.++ ..+.+++++|...|....
T Consensus 1 ei~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~------~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S~~ 71 (83)
T PF09279_consen 1 EIEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLT------DEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFSDE 71 (83)
T ss_dssp HHHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSS------HHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHSTT
T ss_pred CHHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCc------HHHHHHHHHHHccchhhcccCCcCHHHHHHHHCCCc
Confidence 36778888844 788888888888886322221221 34455566666544 479999999999998754
No 195
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=88.25 E-value=0.7 Score=53.28 Aligned_cols=71 Identities=7% Similarity=0.135 Sum_probs=49.7
Q ss_pred hccCCCCCChHHHHHHHHHHcCCCCCceeehhhhccccc---CCC--CCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHH
Q 002525 161 TKTGAAGNGWPAVEKRYNELAITTSDGLLHCSMFGECIG---MNK--ESKEFAGELFRGLCRKHNISGDSINKAQLKEFW 235 (912)
Q Consensus 161 ~~~~~~~~~~~~l~~~F~~ld~~d~dG~I~~~ef~~~lg---~~~--~~~~~~~~lf~~l~d~d~~~~G~Id~~EF~~~~ 235 (912)
.+.+.+ |+..+++.|.++| |++|+++..|+...++ ... ...++++++.. ..+.+.+|.|+|+||+...
T Consensus 11 ~~~tq~--El~~l~~kF~~~d--~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~---~~~~~~~g~v~fe~f~~~~ 83 (627)
T KOG0046|consen 11 SQLTQE--ELRELKEKFNKLD--DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILG---EVGVDADGRVEFEEFVGIF 83 (627)
T ss_pred ccccHH--HHHHHHHHHHhhc--CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHh---ccCCCcCCccCHHHHHHHH
Confidence 444555 8999999999999 5999999999988872 210 02344555544 3344445999999999966
Q ss_pred HHh
Q 002525 236 DQI 238 (912)
Q Consensus 236 ~~~ 238 (912)
..+
T Consensus 84 ~~l 86 (627)
T KOG0046|consen 84 LNL 86 (627)
T ss_pred Hhh
Confidence 543
No 196
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=88.23 E-value=0.4 Score=52.03 Aligned_cols=69 Identities=13% Similarity=0.173 Sum_probs=55.2
Q ss_pred HHHHHHhHhCCCCCCcccHHHHHHHHHhhhccCcccchHHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhCCCC
Q 002525 246 RLQTFFDMVDTDADGRITEEEVKEIISLSASANKLSNIQKQAEEYAAMIMEELDPDNAGYIMIHNLETLLLQAPNQ 321 (912)
Q Consensus 246 ~L~~aF~~fDkd~dG~It~eEl~~il~~~~~~~~l~~~~~~~ee~~~~i~~e~D~d~dG~Is~~EF~~~l~~~p~~ 321 (912)
-+..-|..+|+|.++.|.+.|++.+=.......++ ..-...+++..|.|+|-.||++|+..-|...+..
T Consensus 334 vv~w~F~qLdkN~nn~i~rrEwKpFK~~l~k~s~~-------rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~~~~~ 402 (421)
T KOG4578|consen 334 VVHWYFNQLDKNSNNDIERREWKPFKRVLLKKSKP-------RKCSRKFFKYCDLNKDKKISLDEWRGCLGVEKER 402 (421)
T ss_pred eeeeeeeeecccccCccchhhcchHHHHHHhhccH-------HHHhhhcchhcccCCCceecHHHHhhhhcccccc
Confidence 36778999999999999999988765543332222 3455669999999999999999999999887764
No 197
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=85.67 E-value=5.7 Score=47.06 Aligned_cols=147 Identities=12% Similarity=0.137 Sum_probs=87.8
Q ss_pred hHHHHHHHHHHcCCCCCceeehhhhc----ccccCCCCCHHHHHHHHHHHHhhCCC--CCCcccHHHHHHHHHHhcCCCh
Q 002525 170 WPAVEKRYNELAITTSDGLLHCSMFG----ECIGMNKESKEFAGELFRGLCRKHNI--SGDSINKAQLKEFWDQISDESF 243 (912)
Q Consensus 170 ~~~l~~~F~~ld~~d~dG~I~~~ef~----~~lg~~~~~~~~~~~lf~~l~d~d~~--~~G~Id~~EF~~~~~~~~~~~~ 243 (912)
+..|.++|+--|. |.||.++-+|+. .|++.. -+..+++.+-..+.+.--+ ..+.++..-|+..-..+.+...
T Consensus 194 v~al~RIFki~D~-d~D~~Lsd~Eln~fQ~~CF~~p-l~p~~l~~vk~vv~e~~p~gv~~~~ltl~GFLfL~~lfiergr 271 (625)
T KOG1707|consen 194 VKALKRIFKISDS-DNDGALSDAELNDFQKKCFNTP-LDPQELEDVKNVVQEICPDGVYERGLTLPGFLFLNTLFIERGR 271 (625)
T ss_pred HHHHHHHHhhhcc-ccccccchhhhhHHHHHhcCCC-CCHHHHHHHHHHHHhhcCchhhhccccccchHHHHHHHHHhcc
Confidence 5678889998887 999999977763 567655 2444455555533332221 1255565666665544333333
Q ss_pred HHHHHHHHhHhCCCCCCcccHHHHHHHHHhhhccCcccchHHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhCCC
Q 002525 244 DSRLQTFFDMVDTDADGRITEEEVKEIISLSASANKLSNIQKQAEEYAAMIMEELDPDNAGYIMIHNLETLLLQAPN 320 (912)
Q Consensus 244 ee~L~~aF~~fDkd~dG~It~eEl~~il~~~~~~~~l~~~~~~~ee~~~~i~~e~D~d~dG~Is~~EF~~~l~~~p~ 320 (912)
.|-.-.+-+.|--+.+=.++.+=+..-+... .....++....-+.+..+|+.+|.|+||..+-+||..+....|.
T Consensus 272 ~EttW~iLR~fgY~DsleL~~~~l~p~~~~~--p~~s~ELs~~~~~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P~ 346 (625)
T KOG1707|consen 272 HETTWTILRKFGYTDSLELTDEYLPPRLKVP--PDQSVELSPKGYRFLVDVFEKFDRDNDGALSPEELKDLFSTAPG 346 (625)
T ss_pred ccchhhhhhhcCCcchhhhhhhhcCccccCC--CCcceeccHHHHHHHHHHHHhccCCCCCCcCHHHHHHHhhhCCC
Confidence 3333344444444444444443333222211 11112223445667888999999999999999999999999984
No 198
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=85.04 E-value=1.9 Score=53.55 Aligned_cols=99 Identities=16% Similarity=0.165 Sum_probs=76.8
Q ss_pred ChHHHHHHHHHHcCCCCCceeehhhhcccc---cCCCCC-HHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHH-hcCCCh
Q 002525 169 GWPAVEKRYNELAITTSDGLLHCSMFGECI---GMNKES-KEFAGELFRGLCRKHNISGDSINKAQLKEFWDQ-ISDESF 243 (912)
Q Consensus 169 ~~~~l~~~F~~ld~~d~dG~I~~~ef~~~l---g~~~~~-~~~~~~lf~~l~d~d~~~~G~Id~~EF~~~~~~-~~~~~~ 243 (912)
...+++..|...+. ...|.++.++|..|+ |.+.+. .....+.|.++...|-+.-|.+++.||...+.. ......
T Consensus 745 v~~ElrAle~~~~~-~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~~e~l~~ 823 (890)
T KOG0035|consen 745 VLDELRALENEQDK-IDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLEREYEDLDT 823 (890)
T ss_pred HHHHHHHHHhHHHH-hhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhhhhhhhcH
Confidence 56778888888887 556889999999998 544222 445778888776666544489999999999876 455677
Q ss_pred HHHHHHHHhHhCCCCCCcccHHHHHH
Q 002525 244 DSRLQTFFDMVDTDADGRITEEEVKE 269 (912)
Q Consensus 244 ee~L~~aF~~fDkd~dG~It~eEl~~ 269 (912)
++++..+|..+=++.. +|..+||..
T Consensus 824 ~~r~i~s~~d~~ktk~-~lL~eEL~~ 848 (890)
T KOG0035|consen 824 ELRAILAFEDWAKTKA-YLLLEELVR 848 (890)
T ss_pred HHHHHHHHHHHHcchh-HHHHHHHHh
Confidence 8899999999988777 899999876
No 199
>PLN02952 phosphoinositide phospholipase C
Probab=84.97 E-value=4.8 Score=48.63 Aligned_cols=92 Identities=10% Similarity=0.163 Sum_probs=59.5
Q ss_pred CcccHHHHHHHHHHhc--CCChHHHHHHHHhHhCCCCCCcccHHHHHHHHHhhhccCcccchHHHHHHHHHHHhhhcC--
Q 002525 224 DSINKAQLKEFWDQIS--DESFDSRLQTFFDMVDTDADGRITEEEVKEIISLSASANKLSNIQKQAEEYAAMIMEELD-- 299 (912)
Q Consensus 224 G~Id~~EF~~~~~~~~--~~~~ee~L~~aF~~fDkd~dG~It~eEl~~il~~~~~~~~l~~~~~~~ee~~~~i~~e~D-- 299 (912)
|.++|+||..+...+. ....-.++..+|..+-.+ ++.+|.++|..+|...-.....+ .+.+++.++.+++...
T Consensus 15 g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~~-~~~mt~~~l~~FL~~~Q~e~~~~--~~~~~~i~~~~~~~~~~~ 91 (599)
T PLN02952 15 GSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSVG-GGHMGADQLRRFLVLHQDELDCT--LAEAQRIVEEVINRRHHV 91 (599)
T ss_pred CCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhCC-CCccCHHHHHHHHHHhCCCcCCC--HHHHHHHHHHHHhhcccc
Confidence 8999999998887764 233567899999999544 46899999999997432222111 1222333333332211
Q ss_pred -CCCCCcccHHHHHHHHHhC
Q 002525 300 -PDNAGYIMIHNLETLLLQA 318 (912)
Q Consensus 300 -~d~dG~Is~~EF~~~l~~~ 318 (912)
..+.+.++++.|...|...
T Consensus 92 ~~~~~~~l~~~~F~~~l~s~ 111 (599)
T PLN02952 92 TRYTRHGLNLDDFFHFLLYD 111 (599)
T ss_pred ccccccCcCHHHHHHHHcCc
Confidence 1234569999999999853
No 200
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=84.94 E-value=1.9 Score=51.30 Aligned_cols=108 Identities=19% Similarity=0.218 Sum_probs=73.3
Q ss_pred hhhhhhccCCCCCChHHHHHHHHHHcCCCCCc-------------eeehhhhcccc-cCCC--CCHHHHHHHHHHHHhhC
Q 002525 156 LKFITTKTGAAGNGWPAVEKRYNELAITTSDG-------------LLHCSMFGECI-GMNK--ESKEFAGELFRGLCRKH 219 (912)
Q Consensus 156 L~~i~~~~~~~~~~~~~l~~~F~~ld~~d~dG-------------~I~~~ef~~~l-g~~~--~~~~~~~~lf~~l~d~d 219 (912)
||.+.++..-..++++.|..+|+.--..+.-| .|+.+.|...+ +..+ .+..+++++|+. .|+.
T Consensus 489 lrs~~~~~~lt~~dL~~lYd~f~~e~~~~~~~~~~~~p~~~~~eqyi~~~~f~~~f~~l~pw~~s~~~~~rlF~l-~D~s 567 (671)
T KOG4347|consen 489 LRSVVQTTSLTNTDLENLYDLFKEEHLTNSIGLGRSDPDFEAFEQYIDYAQFLEVFRELLPWAVSLIFLERLFRL-LDDS 567 (671)
T ss_pred HHhhcccCccCHHHHHHHHHHHHHHHhccCcccCCCCCCchHHHHHHHHhhHHHHhhccCchhHHHHHHHHHHHh-cccC
Confidence 56665544332237888888887632101111 13333333333 2221 245678999995 4444
Q ss_pred CCCCCcccHHHHHHHHHHhcCCChHHHHHHHHhHhCCCCCCcccHHHH
Q 002525 220 NISGDSINKAQLKEFWDQISDESFDSRLQTFFDMVDTDADGRITEEEV 267 (912)
Q Consensus 220 ~~~~G~Id~~EF~~~~~~~~~~~~ee~L~~aF~~fDkd~dG~It~eEl 267 (912)
++ |.|+|.+|+..+..++....-+++..+|+++|.+++ ....+|+
T Consensus 568 ~~--g~Ltf~~lv~gL~~l~~~~~~ek~~l~y~lh~~p~~-~~d~e~~ 612 (671)
T KOG4347|consen 568 MT--GLLTFKDLVSGLSILKAGDALEKLKLLYKLHDPPAD-ELDREEV 612 (671)
T ss_pred Cc--ceeEHHHHHHHHHHHHhhhHHHHHHHHHhhccCCcc-ccccccc
Confidence 44 999999999999999888889999999999999999 9999987
No 201
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=84.82 E-value=0.57 Score=59.02 Aligned_cols=136 Identities=18% Similarity=0.230 Sum_probs=100.8
Q ss_pred ChHHHHHHHHHHcCCCCCceeehhhhcccccCCCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHh----c-----
Q 002525 169 GWPAVEKRYNELAITTSDGLLHCSMFGECIGMNKESKEFAGELFRGLCRKHNISGDSINKAQLKEFWDQI----S----- 239 (912)
Q Consensus 169 ~~~~l~~~F~~ld~~d~dG~I~~~ef~~~lg~~~~~~~~~~~lf~~l~d~d~~~~G~Id~~EF~~~~~~~----~----- 239 (912)
+.....++|..+.. ++|.++-+.-+.++....-......++.+ +.|.|.+ |.+|+.||..+|... .
T Consensus 127 e~aky~q~f~s~~p--~~g~~sg~~~~pil~~s~Lp~~~l~~iw~-l~d~d~~--g~Ld~~ef~~am~l~~~~l~~~~~p 201 (847)
T KOG0998|consen 127 EQAKYDQIFRSLSP--SNGLLSGDKAKPILLNSKLPSDVLGRIWE-LSDIDKD--GNLDRDEFAVAMHLINDLLNGNSEP 201 (847)
T ss_pred HHHHHHHHHhccCC--CCCccccchhhhhhhcCCCChhhhccccc-ccccccc--CCCChhhhhhhhhHHHHHhhcccCC
Confidence 56778899999996 79999998888887443234455667777 6777666 999999999987542 1
Q ss_pred --------------------------------------------------------------------------CCC--h
Q 002525 240 --------------------------------------------------------------------------DES--F 243 (912)
Q Consensus 240 --------------------------------------------------------------------------~~~--~ 243 (912)
... .
T Consensus 202 ~P~~~p~~lIpps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~~~~~~s~~~~~~~~~~q~~~s~~~~vsp~d 281 (847)
T KOG0998|consen 202 VPSRLPPSLIPPSKSELSANSSSKAIPFSQPFLASMASPTTLSSLVDLSALNSNPSLSSLSLASSMQLIVSWSPKVSPSD 281 (847)
T ss_pred CCccCCcccCCcchhcccccCcccccccccccccccccccccccccchhcccCCccccccccccccccccccCcccChHH
Confidence 001 1
Q ss_pred HHHHHHHHhHhCCCCCCcccHHHHHHHHHhhhccCcccchHHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhCC
Q 002525 244 DSRLQTFFDMVDTDADGRITEEEVKEIISLSASANKLSNIQKQAEEYAAMIMEELDPDNAGYIMIHNLETLLLQAP 319 (912)
Q Consensus 244 ee~L~~aF~~fDkd~dG~It~eEl~~il~~~~~~~~l~~~~~~~ee~~~~i~~e~D~d~dG~Is~~EF~~~l~~~p 319 (912)
..+...+|..+|++.+|.|+-.+...++.. .++. ...+..+-...|.+++|.++++||.-.|-...
T Consensus 282 ~~~~~~if~q~d~~~dG~I~s~~~~~~f~~----~gl~------~~~l~~~w~l~d~~n~~~ls~~ef~~~~~~~~ 347 (847)
T KOG0998|consen 282 KQKYSKIFSQVDKDNDGSISSNEARNIFLP----FGLS------KPRLAHVWLLADTQNTGTLSKDEFALAMHLLE 347 (847)
T ss_pred HHHHHHHHHhccccCCCccccccccccccc----CCCC------hhhhhhhhhhcchhccCcccccccchhhhhhh
Confidence 234666899999999999999999988852 3444 33455578889999999999999887775543
No 202
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=83.32 E-value=1.2 Score=48.47 Aligned_cols=85 Identities=13% Similarity=0.139 Sum_probs=63.5
Q ss_pred CCcccHHHHHHHHHHhcCCChHHHHHHHHhHhCCCCCCcccHHHHHHHHHhhhccCcccchHHHHHHHHHHHhhhcCCCC
Q 002525 223 GDSINKAQLKEFWDQISDESFDSRLQTFFDMVDTDADGRITEEEVKEIISLSASANKLSNIQKQAEEYAAMIMEELDPDN 302 (912)
Q Consensus 223 ~G~Id~~EF~~~~~~~~~~~~ee~L~~aF~~fDkd~dG~It~eEl~~il~~~~~~~~l~~~~~~~ee~~~~i~~e~D~d~ 302 (912)
++.|-..||...+.. ...++++..|.+||.+++|.++..|--..+........ ..+.++..|+.+|.+.
T Consensus 241 g~~igi~efa~~l~v----pvsd~l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~-------t~~iiq~afk~f~v~e 309 (412)
T KOG4666|consen 241 GPDIGIVEFAVNLRV----PVSDKLAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPV-------TPVIIQYAFKRFSVAE 309 (412)
T ss_pred CCCcceeEeeeeeec----chhhhhhhhhheecCCCCCcccHHHHhhhheeeeCCCC-------cHHHHHHHHHhccccc
Confidence 478888888765542 23378999999999999999998886554432221111 1567788999999999
Q ss_pred CCcccHHHHHHHHHhC
Q 002525 303 AGYIMIHNLETLLLQA 318 (912)
Q Consensus 303 dG~Is~~EF~~~l~~~ 318 (912)
||++.-++|-.+++..
T Consensus 310 Dg~~ge~~ls~ilq~~ 325 (412)
T KOG4666|consen 310 DGISGEHILSLILQVV 325 (412)
T ss_pred ccccchHHHHHHHHHh
Confidence 9999999998888753
No 203
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=82.66 E-value=1.2 Score=48.87 Aligned_cols=62 Identities=19% Similarity=0.220 Sum_probs=51.8
Q ss_pred HHHHHHHHhHhCCCCCCcccHHHHHHHHHhhhccCcccchHHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHh
Q 002525 244 DSRLQTFFDMVDTDADGRITEEEVKEIISLSASANKLSNIQKQAEEYAAMIMEELDPDNAGYIMIHNLETLLLQ 317 (912)
Q Consensus 244 ee~L~~aF~~fDkd~dG~It~eEl~~il~~~~~~~~l~~~~~~~ee~~~~i~~e~D~d~dG~Is~~EF~~~l~~ 317 (912)
+..+-.+|...|.|.||.++..||+.+-. ..+ |.=++.+|...|...||.||-.|+-.-..+
T Consensus 249 Kds~gWMFnklD~N~Dl~Ld~sEl~~I~l---dkn---------E~CikpFfnsCD~~kDg~iS~~EWC~CF~k 310 (434)
T KOG3555|consen 249 KDSLGWMFNKLDTNYDLLLDQSELRAIEL---DKN---------EACIKPFFNSCDTYKDGSISTNEWCYCFQK 310 (434)
T ss_pred hhhhhhhhhccccccccccCHHHhhhhhc---cCc---------hhHHHHHHhhhcccccCccccchhhhhhcc
Confidence 56799999999999999999999997753 111 344666999999999999999999987765
No 204
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=81.63 E-value=2.2 Score=46.86 Aligned_cols=94 Identities=17% Similarity=0.181 Sum_probs=66.8
Q ss_pred HHHHHHHHHHcCCCCCceeehhhhccc---c--cCCCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhcCCChHH
Q 002525 171 PAVEKRYNELAITTSDGLLHCSMFGEC---I--GMNKESKEFAGELFRGLCRKHNISGDSINKAQLKEFWDQISDESFDS 245 (912)
Q Consensus 171 ~~l~~~F~~ld~~d~dG~I~~~ef~~~---l--g~~~~~~~~~~~lf~~l~d~d~~~~G~Id~~EF~~~~~~~~~~~~ee 245 (912)
.+|++-|+.+-. +.++......+... + .+.|..+..+.-||..++ .+.+|.+|..|+...- ....+.
T Consensus 211 ~RL~dWF~~lhe-~s~~~~~~ss~~~~~~~~d~s~~p~CKds~gWMFnklD---~N~Dl~Ld~sEl~~I~----ldknE~ 282 (434)
T KOG3555|consen 211 NRLRDWFKALHE-DSSQNDKTSSLHSAASGFDTSILPICKDSLGWMFNKLD---TNYDLLLDQSELRAIE----LDKNEA 282 (434)
T ss_pred HHHHHHHHHHHh-hhhccCcchhhcccccccccccCcchhhhhhhhhhccc---cccccccCHHHhhhhh----ccCchh
Confidence 347777988876 56665555554443 2 112224566889998663 3444999999986653 345677
Q ss_pred HHHHHHhHhCCCCCCcccHHHHHHHHH
Q 002525 246 RLQTFFDMVDTDADGRITEEEVKEIIS 272 (912)
Q Consensus 246 ~L~~aF~~fDkd~dG~It~eEl~~il~ 272 (912)
-++-+|+++|...||.|+.+|+-..+.
T Consensus 283 CikpFfnsCD~~kDg~iS~~EWC~CF~ 309 (434)
T KOG3555|consen 283 CIKPFFNSCDTYKDGSISTNEWCYCFQ 309 (434)
T ss_pred HHHHHHhhhcccccCccccchhhhhhc
Confidence 799999999999999999999987775
No 205
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=79.94 E-value=3.2 Score=36.49 Aligned_cols=61 Identities=16% Similarity=0.357 Sum_probs=46.2
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHHhcCC--ChHHHHHHHHhHhCCC----CCCcccHHHHHHHHH
Q 002525 208 AGELFRGLCRKHNISGDSINKAQLKEFWDQISDE--SFDSRLQTFFDMVDTD----ADGRITEEEVKEIIS 272 (912)
Q Consensus 208 ~~~lf~~l~d~d~~~~G~Id~~EF~~~~~~~~~~--~~ee~L~~aF~~fDkd----~dG~It~eEl~~il~ 272 (912)
++.+|..+.. ++ +.|+.++|..++..-.+. ..++.++.+++.|..+ ..+.+|.++|...|.
T Consensus 2 i~~if~~ys~-~~---~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~ 68 (83)
T PF09279_consen 2 IEEIFRKYSS-DK---EYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLF 68 (83)
T ss_dssp HHHHHHHHCT-TS---SSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHH
T ss_pred HHHHHHHHhC-CC---CcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHC
Confidence 5677886643 33 899999999999765443 3578888888888665 479999999999985
No 206
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=79.81 E-value=9.7 Score=34.34 Aligned_cols=72 Identities=10% Similarity=0.218 Sum_probs=44.5
Q ss_pred HHHHHHHHhHhCCCCCCcccHHHHHHHHHhhh---c--cCcccchHHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhC
Q 002525 244 DSRLQTFFDMVDTDADGRITEEEVKEIISLSA---S--ANKLSNIQKQAEEYAAMIMEELDPDNAGYIMIHNLETLLLQA 318 (912)
Q Consensus 244 ee~L~~aF~~fDkd~dG~It~eEl~~il~~~~---~--~~~l~~~~~~~ee~~~~i~~e~D~d~dG~Is~~EF~~~l~~~ 318 (912)
++|++.+|+.+ .|.+|.++..-|..+|.... . ....+. ...+..++..|+.. ...-.|+.++|...|+..
T Consensus 2 ~dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aF--g~~e~sv~sCF~~~--~~~~~I~~~~Fl~wl~~e 76 (90)
T PF09069_consen 2 EDKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAF--GYIEPSVRSCFQQV--QLSPKITENQFLDWLMSE 76 (90)
T ss_dssp HHHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGG--T--HHHHHHHHHHT--TT-S-B-HHHHHHHHHT-
T ss_pred hHHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccc--cCcHHHHHHHhccc--CCCCccCHHHHHHHHHhC
Confidence 57899999999 78999999999988875210 0 011111 11466777889887 355679999999999988
Q ss_pred CC
Q 002525 319 PN 320 (912)
Q Consensus 319 p~ 320 (912)
|.
T Consensus 77 Pq 78 (90)
T PF09069_consen 77 PQ 78 (90)
T ss_dssp -T
T ss_pred CC
Confidence 83
No 207
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=74.66 E-value=1.7 Score=37.12 Aligned_cols=60 Identities=20% Similarity=0.359 Sum_probs=38.6
Q ss_pred CChHHHHHHHHhHhCCCCCCcccHHHHHHHHHhhhccCcccchHHHHHHHHHHHhhhcC-CC---CCCcccHHHHHH
Q 002525 241 ESFDSRLQTFFDMVDTDADGRITEEEVKEIISLSASANKLSNIQKQAEEYAAMIMEELD-PD---NAGYIMIHNLET 313 (912)
Q Consensus 241 ~~~ee~L~~aF~~fDkd~dG~It~eEl~~il~~~~~~~~l~~~~~~~ee~~~~i~~e~D-~d---~dG~Is~~EF~~ 313 (912)
..+.|.+..+|+.+ .++.++||.+||+..|. . +++ +++..-|.... ++ ..|..+|..|.+
T Consensus 2 ~~s~eqv~~aFr~l-A~~KpyVT~~dLr~~l~----p-------e~a-ey~~~~Mp~~~~~~~~~~~~~~DY~~f~~ 65 (69)
T PF08726_consen 2 QDSAEQVEEAFRAL-AGGKPYVTEEDLRRSLT----P-------EQA-EYCISRMPPYEGPDGDAIPGAYDYESFTN 65 (69)
T ss_dssp SSTCHHHHHHHHHH-CTSSSCEEHHHHHHHS-----C-------CCH-HHHHCCSEC--SSS----TTEEECHHHHC
T ss_pred CCCHHHHHHHHHHH-HcCCCcccHHHHHHHcC----c-------HHH-HHHHHHCcccCCCCcCCCCCCcCHHHHHH
Confidence 34568899999999 88899999999998773 1 222 44333444433 22 126678877764
No 208
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=70.36 E-value=2.9 Score=45.69 Aligned_cols=62 Identities=19% Similarity=0.296 Sum_probs=46.1
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHHhcC-CChHHHHHHHHhHhCCCCCCcccHHHHHHHHHh
Q 002525 209 GELFRGLCRKHNISGDSINKAQLKEFWDQISD-ESFDSRLQTFFDMVDTDADGRITEEEVKEIISL 273 (912)
Q Consensus 209 ~~lf~~l~d~d~~~~G~Id~~EF~~~~~~~~~-~~~ee~L~~aF~~fDkd~dG~It~eEl~~il~~ 273 (912)
.--|..| |.+.+ +.|+..|+.-|-..+.+ .....-.+.+|+.+|.|+|-.||.+|++..|..
T Consensus 336 ~w~F~qL-dkN~n--n~i~rrEwKpFK~~l~k~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~ 398 (421)
T KOG4578|consen 336 HWYFNQL-DKNSN--NDIERREWKPFKRVLLKKSKPRKCSRKFFKYCDLNKDKKISLDEWRGCLGV 398 (421)
T ss_pred eeeeeee-ccccc--CccchhhcchHHHHHHhhccHHHHhhhcchhcccCCCceecHHHHhhhhcc
Confidence 3445544 33333 88999998887766433 344566799999999999999999999998864
No 209
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=68.18 E-value=83 Score=30.31 Aligned_cols=99 Identities=16% Similarity=0.179 Sum_probs=55.3
Q ss_pred hhhhhhhccCCCCCChHHHHHHHHHHcCCCC-CceeehhhhcccccCCCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHH
Q 002525 155 GLKFITTKTGAAGNGWPAVEKRYNELAITTS-DGLLHCSMFGECIGMNKESKEFAGELFRGLCRKHNISGDSINKAQLKE 233 (912)
Q Consensus 155 ~L~~i~~~~~~~~~~~~~l~~~F~~ld~~d~-dG~I~~~ef~~~lg~~~~~~~~~~~lf~~l~d~d~~~~G~Id~~EF~~ 233 (912)
+||++.+...-+--++..+.+.|+...-... |..|+..|+..+ ...+|+.+..+.. +..+..-.
T Consensus 25 KLR~lQk~~~l~lv~l~~v~~~f~~~~l~~~~d~~l~v~~l~~~----------L~~iy~~l~~~~p---~~~~i~~~-- 89 (127)
T PF09068_consen 25 KLRFLQKRLCLDLVDLSNVIEAFREHGLNQSNDSSLSVSQLETL----------LSSIYEFLNKRLP---TLHQIPSR-- 89 (127)
T ss_dssp HHHHHHHHTTGGG--HHHHHHHHHHTT---T-TSEEEHHHHHHH----------HHHHHHHHHHHST---TS--HH----
T ss_pred HHHHHHHHHhheeeeHHHHHHHHHHcCCCcccCCCCCHHHHHHH----------HHHHHHHHHHHCC---CCCCCCch--
Confidence 4788877643222267788889998764112 456666666554 3567765555544 33332100
Q ss_pred HHHHhcCCChHHHHHHHHhHhCCCCCCcccHHHHHHHHH
Q 002525 234 FWDQISDESFDSRLQTFFDMVDTDADGRITEEEVKEIIS 272 (912)
Q Consensus 234 ~~~~~~~~~~ee~L~~aF~~fDkd~dG~It~eEl~~il~ 272 (912)
--+...+--+..+...||.+++|.|+.-+++-.+.
T Consensus 90 ----~v~~a~~L~ln~Ll~vyD~~rtG~I~vls~KvaL~ 124 (127)
T PF09068_consen 90 ----PVDLAVDLLLNWLLNVYDSQRTGKIRVLSFKVALI 124 (127)
T ss_dssp -------HHHHHHHHHHHHHH-TT--SEEEHHHHHHHHH
T ss_pred ----hHHHHHHHHHHHHHHHhCCCCCCeeehhHHHHHHH
Confidence 00011233478899999999999999999987764
No 210
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=67.68 E-value=32 Score=39.13 Aligned_cols=60 Identities=23% Similarity=0.266 Sum_probs=39.8
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHH-hcCCChHHHHHHHHhHhCCCCCCcccHHHHHHHHHhh
Q 002525 208 AGELFRGLCRKHNISGDSINKAQLKEFWDQ-ISDESFDSRLQTFFDMVDTDADGRITEEEVKEIISLS 274 (912)
Q Consensus 208 ~~~lf~~l~d~d~~~~G~Id~~EF~~~~~~-~~~~~~ee~L~~aF~~fDkd~dG~It~eEl~~il~~~ 274 (912)
++.|-..++|+++ |.||.+|=-.|+.- +...+...+-+..|.- .|--||.+||.+....+
T Consensus 70 ir~iHrqmDDD~n---G~Id~~ESdeFlrEdmky~~~~~kr~~~fH~----dD~~ItVedLWeaW~~S 130 (575)
T KOG4403|consen 70 IRDIHRQMDDDHN---GSIDVEESDEFLREDMKYRDSTRKRSEKFHG----DDKHITVEDLWEAWKES 130 (575)
T ss_pred HHHHHHhcccccC---CCcccccchHHHHHHhhcccchhhhhhhccC----CccceeHHHHHHHHHhh
Confidence 4555554433333 99999988777754 4444555555556664 36689999999988643
No 211
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=67.07 E-value=21 Score=43.64 Aligned_cols=96 Identities=13% Similarity=0.242 Sum_probs=69.5
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHHhcCCChHHHHHHHHhHhCCCCCCcccHHHHHHHHHhhhccCcccchHHHH
Q 002525 208 AGELFRGLCRKHNISGDSINKAQLKEFWDQISDESFDSRLQTFFDMVDTDADGRITEEEVKEIISLSASANKLSNIQKQA 287 (912)
Q Consensus 208 ~~~lf~~l~d~d~~~~G~Id~~EF~~~~~~~~~~~~ee~L~~aF~~fDkd~dG~It~eEl~~il~~~~~~~~l~~~~~~~ 287 (912)
+..+|+ ..|.+++|.+++.|-..+...+.-...+.+++..|+..|.-++|++..+|+.++...... .
T Consensus 138 i~~~~~---~ad~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~--r-------- 204 (746)
T KOG0169|consen 138 IHSIFQ---EADKNKNGHMSFDEVLDLLKQLNVQLSESKARRLFKESDNSQTGKLEEEEFVKFRKELTK--R-------- 204 (746)
T ss_pred HHHHHH---HHccccccccchhhHHHHHHHHHHhhhHHHHHHHHHHHHhhccceehHHHHHHHHHhhcc--C--------
Confidence 344454 344444599999999999988888888999999999999999999999999988753211 1
Q ss_pred HHHHHHHhhhcCCCCCCcccHHHHHHHHHhC
Q 002525 288 EEYAAMIMEELDPDNAGYIMIHNLETLLLQA 318 (912)
Q Consensus 288 ee~~~~i~~e~D~d~dG~Is~~EF~~~l~~~ 318 (912)
. .+..+|.++-.+ .++++.+++.++|...
T Consensus 205 p-ev~~~f~~~s~~-~~~ls~~~L~~Fl~~~ 233 (746)
T KOG0169|consen 205 P-EVYFLFVQYSHG-KEYLSTDDLLRFLEEE 233 (746)
T ss_pred c-hHHHHHHHHhCC-CCccCHHHHHHHHHHh
Confidence 1 233455554433 7778888877777654
No 212
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=63.96 E-value=13 Score=46.59 Aligned_cols=74 Identities=15% Similarity=0.109 Sum_probs=60.5
Q ss_pred HHHHHHHHhHhCCCCCCcccHHHHHHHHHhhhccCcccchHHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhCCC
Q 002525 244 DSRLQTFFDMVDTDADGRITEEEVKEIISLSASANKLSNIQKQAEEYAAMIMEELDPDNAGYIMIHNLETLLLQAPN 320 (912)
Q Consensus 244 ee~L~~aF~~fDkd~dG~It~eEl~~il~~~~~~~~l~~~~~~~ee~~~~i~~e~D~d~dG~Is~~EF~~~l~~~p~ 320 (912)
.++++..|+.+|+...|-.+.+|+...+..++- + ... +++..+.+..++...|++..|++++.+|...|.+.-+
T Consensus 746 ~~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~-~-~e~-ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~~e 819 (890)
T KOG0035|consen 746 LDELRALENEQDKIDGGAASPEELLRCLMSLGY-N-TEE-EEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLEREYE 819 (890)
T ss_pred HHHHHHHHhHHHHhhcccCCHHHHHHHHHhcCc-c-cch-hHHHHHHHHHHHhccCcccccceeHHHHHhHhhhhhh
Confidence 467999999999999999999999998864332 1 111 4667788999999999999999999999999887543
No 213
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=63.27 E-value=8.3 Score=45.41 Aligned_cols=66 Identities=17% Similarity=0.259 Sum_probs=52.7
Q ss_pred HHHHHHhHhCCCCCCcccHHHHHHHHHhhhccCcccchHHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhCC
Q 002525 246 RLQTFFDMVDTDADGRITEEEVKEIISLSASANKLSNIQKQAEEYAAMIMEELDPDNAGYIMIHNLETLLLQAP 319 (912)
Q Consensus 246 ~L~~aF~~fDkd~dG~It~eEl~~il~~~~~~~~l~~~~~~~ee~~~~i~~e~D~d~dG~Is~~EF~~~l~~~p 319 (912)
+.+.-|..+|.|+.|+++.+++.++|+... .+.+ ++..+++++|+|.+.+|+++.+||..+|..-.
T Consensus 594 ~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~--~~~d------~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~~~ 659 (680)
T KOG0042|consen 594 RRKTRFAFLDADKKAYQAIADVLKVLKSEN--VGWD------EDRLHEELQEADENLNGFVELREFLQLMSAIK 659 (680)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHHHHHhc--CCCC------HHHHHHHHHHHHHhhcceeeHHHHHHHHHHHh
Confidence 355679999999999999999999997432 1232 45566789999999999999999999887543
No 214
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=58.98 E-value=7 Score=47.23 Aligned_cols=63 Identities=11% Similarity=0.120 Sum_probs=49.8
Q ss_pred HHHHHHHHHHcCCCCCceeehhhhcccccCCCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHH
Q 002525 171 PAVEKRYNELAITTSDGLLHCSMFGECIGMNKESKEFAGELFRGLCRKHNISGDSINKAQLKEFWDQ 237 (912)
Q Consensus 171 ~~l~~~F~~ld~~d~dG~I~~~ef~~~lg~~~~~~~~~~~lf~~l~d~d~~~~G~Id~~EF~~~~~~ 237 (912)
-...++|+.+|+ ...|+|+-..=+.+|+...-....+..|.. |.|.|+| |+++-+||+-+|-.
T Consensus 195 lKY~QlFNa~Dk-trsG~Lsg~qaR~aL~qS~Lpq~~LA~IW~-LsDvd~D--GkL~~dEfilam~l 257 (1118)
T KOG1029|consen 195 LKYRQLFNALDK-TRSGYLSGQQARSALGQSGLPQNQLAHIWT-LSDVDGD--GKLSADEFILAMHL 257 (1118)
T ss_pred hHHHHHhhhccc-ccccccccHHHHHHHHhcCCchhhHhhhee-eeccCCC--CcccHHHHHHHHHH
Confidence 357899999998 789999998888888554223344667777 7888887 99999999988754
No 215
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=53.99 E-value=5.6 Score=34.03 Aligned_cols=60 Identities=8% Similarity=0.016 Sum_probs=37.8
Q ss_pred HHHHHHHHHHcCCCCCceeehhhhcccccCCCCCHHHHHHHHHHHHhhCCC-CCCcccHHHHHHH
Q 002525 171 PAVEKRYNELAITTSDGLLHCSMFGECIGMNKESKEFAGELFRGLCRKHNI-SGDSINKAQLKEF 234 (912)
Q Consensus 171 ~~l~~~F~~ld~~d~dG~I~~~ef~~~lg~~~~~~~~~~~lf~~l~d~d~~-~~G~Id~~EF~~~ 234 (912)
+++.+.|+.++. +.+.|+.+||+..|--. +.+++.+-+....+.+++ ..|..||..|...
T Consensus 6 eqv~~aFr~lA~--~KpyVT~~dLr~~l~pe--~aey~~~~Mp~~~~~~~~~~~~~~DY~~f~~~ 66 (69)
T PF08726_consen 6 EQVEEAFRALAG--GKPYVTEEDLRRSLTPE--QAEYCISRMPPYEGPDGDAIPGAYDYESFTNS 66 (69)
T ss_dssp HHHHHHHHHHCT--SSSCEEHHHHHHHS-CC--CHHHHHCCSEC--SSS----TTEEECHHHHCC
T ss_pred HHHHHHHHHHHc--CCCcccHHHHHHHcCcH--HHHHHHHHCcccCCCCcCCCCCCcCHHHHHHH
Confidence 569999999974 88999999999987533 434444333322222211 1278999888653
No 216
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=49.96 E-value=1.1e+02 Score=30.42 Aligned_cols=49 Identities=12% Similarity=0.258 Sum_probs=26.4
Q ss_pred CcccHHHHHHHHHHh---cCCChHHHHHHHHhHhCCCCCCcccHHHHHHHHH
Q 002525 224 DSINKAQLKEFWDQI---SDESFDSRLQTFFDMVDTDADGRITEEEVKEIIS 272 (912)
Q Consensus 224 G~Id~~EF~~~~~~~---~~~~~ee~L~~aF~~fDkd~dG~It~eEl~~il~ 272 (912)
..++-..|...+... ....+...+..+|..+-..+...|++++|.++|.
T Consensus 17 ~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~ 68 (154)
T PF05517_consen 17 TEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALA 68 (154)
T ss_dssp SEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHH
T ss_pred ccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHH
Confidence 455555565555542 2223455666667666555555677777766664
No 217
>PF14145 YrhK: YrhK-like protein
Probab=49.86 E-value=50 Score=27.37 Aligned_cols=53 Identities=21% Similarity=0.438 Sum_probs=30.2
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhhhcccccccchhhhhhHhhHHHHHHHHHHHHH
Q 002525 547 FWYSHHLFIIVYTLLIVHGIKLYLTKKWYQKTTWMYLAVPMVLYACERLTRALR 600 (912)
Q Consensus 547 F~~~H~l~~i~~vll~~H~~~~~~~~~w~~~~~w~yl~~~~~l~~~dr~~R~~r 600 (912)
|...|.+.-++-.++++-|...++.+.++....|+|++.. +++.+--++|+.|
T Consensus 4 ye~~~~~~d~~~~~~FliGSilfl~~~~~~~g~wlFiiGS-~~f~i~~~i~~ir 56 (59)
T PF14145_consen 4 YEIISTVNDFIGGLLFLIGSILFLPESLYTAGTWLFIIGS-ILFLIRPIIRLIR 56 (59)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 3334444433333344456666666667777889887644 4555555666654
No 218
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=48.96 E-value=24 Score=45.15 Aligned_cols=59 Identities=10% Similarity=0.217 Sum_probs=44.0
Q ss_pred HHhHhCCCCCCcccHHHHHHHHHhhhccCcccchHHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHh
Q 002525 250 FFDMVDTDADGRITEEEVKEIISLSASANKLSNIQKQAEEYAAMIMEELDPDNAGYIMIHNLETLLLQ 317 (912)
Q Consensus 250 aF~~fDkd~dG~It~eEl~~il~~~~~~~~l~~~~~~~ee~~~~i~~e~D~d~dG~Is~~EF~~~l~~ 317 (912)
-|+.||.||.|.|++.||...|.. ..... ..+++-++.-+..|.+...+|+||+.-..+
T Consensus 4062 tfkeydpdgkgiiskkdf~kame~---~k~yt------qse~dfllscae~dend~~~y~dfv~rfhe 4120 (5019)
T KOG2243|consen 4062 TFKEYDPDGKGIISKKDFHKAMEG---HKHYT------QSEIDFLLSCAEADENDMFDYEDFVDRFHE 4120 (5019)
T ss_pred cchhcCCCCCccccHHHHHHHHhc---cccch------hHHHHHHHHhhccCccccccHHHHHHHhcC
Confidence 377789999999999999999852 12222 334556777777788889999999876543
No 219
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.58 E-value=23 Score=40.90 Aligned_cols=62 Identities=23% Similarity=0.259 Sum_probs=50.2
Q ss_pred HHHHHHHhHhCCCCCCcccHHHHHHHHHhhhccCcccchHHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHH
Q 002525 245 SRLQTFFDMVDTDADGRITEEEVKEIISLSASANKLSNIQKQAEEYAAMIMEELDPDNAGYIMIHNLETLLL 316 (912)
Q Consensus 245 e~L~~aF~~fDkd~dG~It~eEl~~il~~~~~~~~l~~~~~~~ee~~~~i~~e~D~d~dG~Is~~EF~~~l~ 316 (912)
+....-|+-+-.|-+|+|+-.--++++.. .++. -+++..|.+-.|.|+||.++++||...|.
T Consensus 231 eYYvnQFrtvQpDp~gfisGsaAknFFtK----Sklp------i~ELshIWeLsD~d~DGALtL~EFcAAfH 292 (737)
T KOG1955|consen 231 EYYVNQFRTVQPDPHGFISGSAAKNFFTK----SKLP------IEELSHIWELSDVDRDGALTLSEFCAAFH 292 (737)
T ss_pred HHHHhhhhcccCCcccccccHHHHhhhhh----ccCc------hHHHHHHHhhcccCccccccHHHHHhhHh
Confidence 34555688899999999999988888852 3444 34577799999999999999999999875
No 220
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=47.55 E-value=1.9e+02 Score=27.88 Aligned_cols=103 Identities=15% Similarity=0.174 Sum_probs=61.8
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHH--hc-----CCChHHHHHHHHhHhCCCC--CCcccHHHHHHHHHhhh----
Q 002525 209 GELFRGLCRKHNISGDSINKAQLKEFWDQ--IS-----DESFDSRLQTFFDMVDTDA--DGRITEEEVKEIISLSA---- 275 (912)
Q Consensus 209 ~~lf~~l~d~d~~~~G~Id~~EF~~~~~~--~~-----~~~~ee~L~~aF~~fDkd~--dG~It~eEl~~il~~~~---- 275 (912)
.++++.+.+- +.|-|.-|..++.- +. +.-.-..+..+|+....+. |..|+..|+..++...-
T Consensus 3 ~~l~~~l~~~-----n~IrfsaYRtA~KLR~lQk~~~l~lv~l~~v~~~f~~~~l~~~~d~~l~v~~l~~~L~~iy~~l~ 77 (127)
T PF09068_consen 3 TELMQELQDF-----NNIRFSAYRTAMKLRFLQKRLCLDLVDLSNVIEAFREHGLNQSNDSSLSVSQLETLLSSIYEFLN 77 (127)
T ss_dssp HHHHHHGGGG-----TT-SSHHHHHHHHHHHHHHHTTGGG--HHHHHHHHHHTT---T-TSEEEHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-----hhHHHHHhHHHHHHHHHHHHHhheeeeHHHHHHHHHHcCCCcccCCCCCHHHHHHHHHHHHHHHH
Confidence 4566666444 45888899998754 11 1223456788888887655 47899999999886321
Q ss_pred -ccCcccchH-----HHHHHHHHHHhhhcCCCCCCcccHHHHHHHHH
Q 002525 276 -SANKLSNIQ-----KQAEEYAAMIMEELDPDNAGYIMIHNLETLLL 316 (912)
Q Consensus 276 -~~~~l~~~~-----~~~ee~~~~i~~e~D~d~dG~Is~~EF~~~l~ 316 (912)
.......+. .-.+-.+.-++.-+|+++.|.|+.-.|+..+.
T Consensus 78 ~~~p~~~~i~~~~v~~a~~L~ln~Ll~vyD~~rtG~I~vls~KvaL~ 124 (127)
T PF09068_consen 78 KRLPTLHQIPSRPVDLAVDLLLNWLLNVYDSQRTGKIRVLSFKVALI 124 (127)
T ss_dssp HHSTTS--HH-----HHHHHHHHHHHHHH-TT--SEEEHHHHHHHHH
T ss_pred HHCCCCCCCCchhHHHHHHHHHHHHHHHhCCCCCCeeehhHHHHHHH
Confidence 111112211 23344567788999999999999999988764
No 221
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=46.96 E-value=43 Score=33.92 Aligned_cols=30 Identities=10% Similarity=0.107 Sum_probs=19.4
Q ss_pred HHHHHHhhhcCCCCCCcccHHHHHHHHHhC
Q 002525 289 EYAAMIMEELDPDNAGYIMIHNLETLLLQA 318 (912)
Q Consensus 289 e~~~~i~~e~D~d~dG~Is~~EF~~~l~~~ 318 (912)
+-.++||...+..+.+.+|+.|+.+|++.+
T Consensus 96 ~kFe~iF~kya~~~~d~LT~~E~~~m~~~n 125 (174)
T PF05042_consen 96 QKFEEIFSKYAKTGPDALTLRELWRMLKGN 125 (174)
T ss_pred HHHHHHHHHhCCCCCCCcCHHHHHHHHHhc
Confidence 345556777766666677777777766653
No 222
>PLN02292 ferric-chelate reductase
Probab=45.05 E-value=52 Score=40.94 Aligned_cols=54 Identities=20% Similarity=0.477 Sum_probs=44.1
Q ss_pred ccccC-CCCHHHHHHHHHhhCCCCeEEEEEeCChHHHHHHHHHHHhhccCCCceEEEEeecC
Q 002525 852 KSHFA-KPNWRQVYKRIALHHPDSRIGVFYCGAPALTKELRQLASDFSHKTSTKFEFHKENF 912 (912)
Q Consensus 852 ~~~~g-RPd~~~vl~~~~~~~~~~~v~V~~CGP~~m~~~vr~~~~~~~~~~~~~~~fh~E~F 912 (912)
.+|+| |||+++++. +..+++|||++|||++|-.+|.+.|...+. ..++||.=+|
T Consensus 646 ~~~~g~rp~~~~i~~----~~~~~~vgvlv~gp~~~~~~va~~c~s~~~---~~~~~~s~sf 700 (702)
T PLN02292 646 NIHYGERPNLNKLLV----GLKGSSVGVLVCGPKKMRQKVAKICSSGLA---ENLHFESISF 700 (702)
T ss_pred eeeccCCCCHHHHHH----hcCCCceeEEEECcHHHHHHHHHHHhcCCC---cceeEEeecc
Confidence 46777 999999993 444678999999999999999999998763 4677776555
No 223
>PLN02631 ferric-chelate reductase
Probab=43.69 E-value=45 Score=41.40 Aligned_cols=54 Identities=24% Similarity=0.511 Sum_probs=43.7
Q ss_pred cccC-CCCHHHHHHHHHhhCCCCeEEEEEeCChHHHHHHHHHHHhhccCCCceEEEEeecC
Q 002525 853 SHFA-KPNWRQVYKRIALHHPDSRIGVFYCGAPALTKELRQLASDFSHKTSTKFEFHKENF 912 (912)
Q Consensus 853 ~~~g-RPd~~~vl~~~~~~~~~~~v~V~~CGP~~m~~~vr~~~~~~~~~~~~~~~fh~E~F 912 (912)
+|+| |||+++++. +...+.+|||++|||+.|-.+|.+.|...+ ...++||.=+|
T Consensus 643 ~~~g~rp~~~~i~~---~~~~~~~vgvlv~gp~~~~~~va~~c~s~~---~~~~~f~s~sf 697 (699)
T PLN02631 643 VHFGSKPNLKKILL---EAEGSEDVGVMVCGPRKMRHEVAKICSSGL---AKNLHFEAISF 697 (699)
T ss_pred eeecCCCCHHHHHH---hccCCCceeEEEECcHHHHHHHHHHHhcCC---CcceeEEeecc
Confidence 7887 999999997 233345899999999999999999999876 34677776555
No 224
>PF00033 Cytochrom_B_N: Cytochrome b(N-terminal)/b6/petB; InterPro: IPR016174 This entry represents a haem-binding domain with a 4-helical bundle structure that is found in transmembrane di-haem cytochromes. The domain contains four transmembrane helices in an up-and-down bundle, and binds two haem groups in between the helices; three of the four haem-binding residues is conserved between family members. Proteins containing this domain include: N-terminal domain of mitochondrial cytochrome b subunit, in which the domain contains an extra transmembrane linker helix that is absent in plant and cyanobacteria subunits []. Cytochrome b6 subunit of the cytochrome b6f complex, which provides the electronic connection between the photosystems I and II reaction centres of oxygenic photosynthesis, and generates a transmembrane electrochemical proton gradient for adenosine triphosphate synthesis []. Cytochrome gamma subunit of formate dehydrogenase-N (Fdn-N), which acts as a major component of Escherichia coli nitrate respiration []. ; GO: 0022904 respiratory electron transport chain, 0016020 membrane; PDB: 1KQG_C 1KQF_C.
Probab=43.46 E-value=85 Score=31.51 Aligned_cols=28 Identities=11% Similarity=-0.190 Sum_probs=22.1
Q ss_pred ccchhHHHHHHHHHHHHHHHhhhhhhhc
Q 002525 442 DDNLNFHKVIAVGIGIGVILHGGAHLTC 469 (912)
Q Consensus 442 d~~~~fHr~ia~~~~v~~~lH~i~~~~~ 469 (912)
.....+|+++|.+.++..+++.+..+..
T Consensus 44 ~~~~~~H~~~G~~~~~~~~~~~~~~~~~ 71 (188)
T PF00033_consen 44 QLLRWLHFSLGIVFLALFLLRILWRLFS 71 (188)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344689999999999999998876544
No 225
>PF01794 Ferric_reduct: Ferric reductase like transmembrane component; InterPro: IPR013130 This family includes a common region in the transmembrane proteins mammalian cytochrome b-245 heavy chain (gp91-phox), ferric reductase transmembrane component in yeast and respiratory burst oxidase from Arabidopsis thaliana. This may be a family of flavocytochromes capable of moving electrons across the plasma membrane [] that include a potential FAD binding domain. Mutations in the sequence of cytochrome b-245 heavy chain (gp91-phox) lead to the X-linked chronic granulomatous disease. The bacteriocidal ability of phagocytic cells is reduced and is characterised by the absence of a functional plasma membrane associated NADPH oxidase [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0016021 integral to membrane
Probab=43.24 E-value=51 Score=30.70 Aligned_cols=52 Identities=25% Similarity=0.496 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHhhhhhhhhccCCCCCccc--cccccchhhhHHHHHHHH-HHHHHHHhhhhh
Q 002525 509 GIIMVVLMVIAFTLATPWFRRNKLNLPKPLK--RLTGFNAFWYSHHLFIIV-YTLLIVHGIKLY 569 (912)
Q Consensus 509 Gii~~vl~~i~~~~s~~~~Rr~~~~~~~~l~--~~~~ye~F~~~H~l~~i~-~vll~~H~~~~~ 569 (912)
|.++++.+.+.++++ .|.+ |+. ....++.+...|+.++.+ +++..+|+....
T Consensus 2 G~~a~~~l~~~~~l~---~R~~------~l~~~~~~~~~~~~~~Hr~lg~~~~~~~~~H~~~~~ 56 (125)
T PF01794_consen 2 GILAFALLPLVFLLG---LRNS------PLARLTGISFDRLLRFHRWLGRLAFFLALLHGVLYL 56 (125)
T ss_pred HHHHHHHHHHHHHHH---Hhhh------HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666555555 2222 111 112588899999999876 456789986543
No 226
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=40.40 E-value=41 Score=40.50 Aligned_cols=60 Identities=17% Similarity=0.196 Sum_probs=45.6
Q ss_pred hHHHHHHHHhHhCCCCCCcccHHHHHHHHHhhhccCcccchHHHHHHHHHHHhhhcCCCCCCcccHHHH
Q 002525 243 FDSRLQTFFDMVDTDADGRITEEEVKEIISLSASANKLSNIQKQAEEYAAMIMEELDPDNAGYIMIHNL 311 (912)
Q Consensus 243 ~ee~L~~aF~~fDkd~dG~It~eEl~~il~~~~~~~~l~~~~~~~ee~~~~i~~e~D~d~dG~Is~~EF 311 (912)
+..-++..|+.+|++++|.||+.+|..-+...... .+-+-+..+++-+|++.| ..+.+|-
T Consensus 553 s~~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~~--------~~~ek~~l~y~lh~~p~~-~~d~e~~ 612 (671)
T KOG4347|consen 553 SLIFLERLFRLLDDSMTGLLTFKDLVSGLSILKAG--------DALEKLKLLYKLHDPPAD-ELDREEV 612 (671)
T ss_pred HHHHHHHHHHhcccCCcceeEHHHHHHHHHHHHhh--------hHHHHHHHHHhhccCCcc-ccccccc
Confidence 34568999999999999999999998877532211 123456778999999998 7777765
No 227
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=40.19 E-value=91 Score=31.64 Aligned_cols=68 Identities=13% Similarity=0.133 Sum_probs=43.0
Q ss_pred HHHHHHHHhHhCCCCCCcccHHHHHHHHHhhhccCcccchHHH-HHHHHHHHhhhcCCCCCCcccHHHHHHH
Q 002525 244 DSRLQTFFDMVDTDADGRITEEEVKEIISLSASANKLSNIQKQ-AEEYAAMIMEELDPDNAGYIMIHNLETL 314 (912)
Q Consensus 244 ee~L~~aF~~fDkd~dG~It~eEl~~il~~~~~~~~l~~~~~~-~ee~~~~i~~e~D~d~dG~Is~~EF~~~ 314 (912)
.++.+.+|..+++.+.+.+|..|+.+++...-..+..- -.. ..-++..+. .+-.|.||.+.-|+.+.+
T Consensus 95 p~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr~~~D~~--GW~a~~~EW~~~y-~L~~d~dG~l~Ke~iR~v 163 (174)
T PF05042_consen 95 PQKFEEIFSKYAKTGPDALTLRELWRMLKGNRNANDPF--GWFAAFFEWGALY-ILAKDKDGFLSKEDIRGV 163 (174)
T ss_pred HHHHHHHHHHhCCCCCCCcCHHHHHHHHHhccccCCcc--hhhhhhhHHHHHH-HHHcCcCCcEeHHHHhhh
Confidence 46899999999999999999999999997311111110 000 011222222 223577899988876654
No 228
>PF13301 DUF4079: Protein of unknown function (DUF4079)
Probab=36.44 E-value=1.7e+02 Score=29.91 Aligned_cols=87 Identities=14% Similarity=0.023 Sum_probs=49.2
Q ss_pred chhHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCccCCCCCCccceeccccchhHHHHHHHHHHHHHHhh
Q 002525 444 NLNFHKVIAVGIGIGVILHGGAHLTCDFPRLLHATEEEYEPMKPYFGDEQPDNYWWFVKGVEGVTGIIMVVLMVIAFTLA 523 (912)
Q Consensus 444 ~~~fHr~ia~~~~v~~~lH~i~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~g~tGii~~vl~~i~~~~s 523 (912)
....|..+|.+++.+.++=.+.-...-|. ...+.|. .+.| ++|+.++.+|++...++
T Consensus 79 ~r~~H~~~g~~ll~~~~L~~lGG~~~~~~-----------~~~~lf~---spH~---------~~Gl~~~~L~~~s~al~ 135 (175)
T PF13301_consen 79 ARDRHYRLGFALLAFMGLGALGGQLGTYR-----------QNGKLFW---SPHL---------WAGLAVVGLMAFSAALV 135 (175)
T ss_pred hHHHHHHHHHHHHHHHHHHHHcchHHHHH-----------cCCCCcc---CchH---------HHHHHHHHHHHHHHHHH
Confidence 34678888888877766654432222111 1111221 1233 47888888877765555
Q ss_pred hhhhhhccCCCCCccccccccchhhhHHHHHHHH-HHHHHHHhh
Q 002525 524 TPWFRRNKLNLPKPLKRLTGFNAFWYSHHLFIIV-YTLLIVHGI 566 (912)
Q Consensus 524 ~~~~Rr~~~~~~~~l~~~~~ye~F~~~H~l~~i~-~vll~~H~~ 566 (912)
....+-+ -......|..+..+ ++++..|+.
T Consensus 136 ~~i~~g~-------------~~~~R~lHi~lN~~~l~Lf~~q~i 166 (175)
T PF13301_consen 136 PQIQKGN-------------RPWARRLHIYLNSLALLLFAWQAI 166 (175)
T ss_pred HHHccCC-------------chhHHHHHHHHHHHHHHHHHHHHH
Confidence 4443321 23577899988665 455677765
No 229
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=36.43 E-value=1.7e+02 Score=36.84 Aligned_cols=127 Identities=12% Similarity=0.219 Sum_probs=78.0
Q ss_pred CCCceeehhhhcccccCCCCCHHHHHHHHHHHHhhCCC--CCCcc-----cHHHHHHHHHHhcCCChHHHHHHHHhHhCC
Q 002525 184 TSDGLLHCSMFGECIGMNKESKEFAGELFRGLCRKHNI--SGDSI-----NKAQLKEFWDQISDESFDSRLQTFFDMVDT 256 (912)
Q Consensus 184 d~dG~I~~~ef~~~lg~~~~~~~~~~~lf~~l~d~d~~--~~G~I-----d~~EF~~~~~~~~~~~~ee~L~~aF~~fDk 256 (912)
|.+|+|....+.+.+.... .+ .++..++....-. .+..| +++.|..++..+ ....+++.+|..+--
T Consensus 160 n~~grip~knI~k~F~~~k-~~---KrVe~al~~~gLp~~k~dsI~~d~f~~e~f~~~l~kl---cpR~eie~iF~ki~~ 232 (1189)
T KOG1265|consen 160 NFEGRIPVKNIIKTFSADK-KE---KRVEKALEACGLPSGKNDSIEPDDFTLEKFYRLLNKL---CPRPEIEEIFRKISG 232 (1189)
T ss_pred cccccccHHHHHHHhhcCC-ch---hHHHHHHHhcCCCCCCcCccChhhccHHHHHHHHHhc---CCchhHHHHHHHhcc
Confidence 4577777777777664331 11 3444444332111 11334 444555555444 455689999999988
Q ss_pred CCCCcccHHHHHHHHHhhhccCcccchH--HHHHHHHHHHhhhcCCCCC----CcccHHHHHHHHHh
Q 002525 257 DADGRITEEEVKEIISLSASANKLSNIQ--KQAEEYAAMIMEELDPDNA----GYIMIHNLETLLLQ 317 (912)
Q Consensus 257 d~dG~It~eEl~~il~~~~~~~~l~~~~--~~~ee~~~~i~~e~D~d~d----G~Is~~EF~~~l~~ 317 (912)
|+.-+.|.++|.++|...-....+..+- ..-.+.+..+++.+.+|++ |+|+-+-|...+..
T Consensus 233 ~~kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liekyEp~~~~a~~gqms~dgf~ryl~g 299 (1189)
T KOG1265|consen 233 KKKPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEKYEPNSDNAEKGQMSTDGFVRYLMG 299 (1189)
T ss_pred CCCccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHHcCCchhhhhccccchhhhHHHhhC
Confidence 8889999999999996422222222110 0013456778898888764 99999999998875
No 230
>MTH00191 CYTB cytochrome b; Provisional
Probab=36.18 E-value=4.2e+02 Score=30.38 Aligned_cols=30 Identities=13% Similarity=0.348 Sum_probs=15.3
Q ss_pred ccccchhHHHHHHHHHHHHHHhhhhhhhhc
Q 002525 501 VKGVEGVTGIIMVVLMVIAFTLATPWFRRN 530 (912)
Q Consensus 501 ~~~~~g~tGii~~vl~~i~~~~s~~~~Rr~ 530 (912)
++..++-.|-++..+++++.+..+|++-|.
T Consensus 278 Lr~iP~k~~Gll~~~~~i~~l~~lPfLdrs 307 (365)
T MTH00191 278 LRSIPNKLGGVLALVMSILVLFLLPLLHTS 307 (365)
T ss_pred HhcccchHHHHHHHHHHHHHHHHHHHHhcc
Confidence 344444443333334455555677877655
No 231
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.89 E-value=38 Score=39.28 Aligned_cols=30 Identities=23% Similarity=0.325 Sum_probs=19.1
Q ss_pred hHHHHHHHHhHhCCCCCCcccHHHHHHHHH
Q 002525 243 FDSRLQTFFDMVDTDADGRITEEEVKEIIS 272 (912)
Q Consensus 243 ~ee~L~~aF~~fDkd~dG~It~eEl~~il~ 272 (912)
.-++|..++++.|.|.||-+|.+||...+-
T Consensus 263 pi~ELshIWeLsD~d~DGALtL~EFcAAfH 292 (737)
T KOG1955|consen 263 PIEELSHIWELSDVDRDGALTLSEFCAAFH 292 (737)
T ss_pred chHHHHHHHhhcccCccccccHHHHHhhHh
Confidence 345566666666666666666666666654
No 232
>MTH00074 CYTB cytochrome b; Provisional
Probab=32.69 E-value=7.6e+02 Score=28.46 Aligned_cols=20 Identities=25% Similarity=0.350 Sum_probs=10.0
Q ss_pred cchhHHHHHHHHHHHHHHHh
Q 002525 443 DNLNFHKVIAVGIGIGVILH 462 (912)
Q Consensus 443 ~~~~fHr~ia~~~~v~~~lH 462 (912)
++..+|=.+..++++++.+|
T Consensus 178 Rff~lH~llP~~il~l~~~H 197 (380)
T MTH00074 178 RFFAFHFLLPFLIAGASIIH 197 (380)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 44444545555555555555
No 233
>PF01292 Ni_hydr_CYTB: Prokaryotic cytochrome b561; InterPro: IPR011577 Cytochrome b561 is an integral membrane and electron transport protein, that binds two haem groups non-covalently. This domain is also found in a number of nickel-dependent hydrogenase subunits which are also B-type cytochromes that interact with quinones and anchor the hydrogenase to the membrane. Members of the 'eukaryotic cytochrome b561' family can be found in IPR004877 from INTERPRO.; GO: 0009055 electron carrier activity, 0016021 integral to membrane
Probab=31.83 E-value=1.3e+02 Score=30.10 Aligned_cols=22 Identities=14% Similarity=-0.017 Sum_probs=18.6
Q ss_pred hhHHHHHHHHHHHHHHHhhhhh
Q 002525 445 LNFHKVIAVGIGIGVILHGGAH 466 (912)
Q Consensus 445 ~~fHr~ia~~~~v~~~lH~i~~ 466 (912)
..+|.++|.++++..+++....
T Consensus 43 ~~~H~~~G~~~~~~~~~~l~~~ 64 (182)
T PF01292_consen 43 RNWHVIAGLLLFALLIFRLLWR 64 (182)
T ss_pred HhHHHHHHHHHHHHHHHHHHHH
Confidence 5679999999999998887755
No 234
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=31.17 E-value=2.2e+02 Score=35.55 Aligned_cols=162 Identities=15% Similarity=0.185 Sum_probs=87.4
Q ss_pred HHHHHhhhhhhhhhcc-----CCCCCChHHHHHHHHHHcCCCCCceeehhhhcccccC---CCCCHHHHHHHHHHHHhhC
Q 002525 148 AAAHALKGLKFITTKT-----GAAGNGWPAVEKRYNELAITTSDGLLHCSMFGECIGM---NKESKEFAGELFRGLCRKH 219 (912)
Q Consensus 148 ~~~~al~~L~~i~~~~-----~~~~~~~~~l~~~F~~ld~~d~dG~I~~~ef~~~lg~---~~~~~~~~~~lf~~l~d~d 219 (912)
.+..-++||+++-+.. +.. --.++++.|-++|. +.--.|+..+|+..|.. +.....+..+-|. .|
T Consensus 118 e~n~w~~glkw~~~dtl~a~~p~q--I~~wlrk~~ysvd~-~~~~~isard~k~~l~qvn~k~~~~kfl~e~~t----ed 190 (1267)
T KOG1264|consen 118 EANNWLSGLKWLHQDTLNAPTPLQ--IERWLRKQIYSVDQ-TRENSISARDLKTILPQVNFKVSSAKFLKEKFT----ED 190 (1267)
T ss_pred HHHHHhhcchhhhhhhccCCChHH--HHHHHHhhheeccc-hhhhheeHHhhhcccccceEEechHHHHHHHHh----Hh
Confidence 3444566777765422 111 12468888988885 56677999999988822 1113334434343 12
Q ss_pred CCCCCcccHHHHHHHHHHhcCCChHHHHHH---HHhH--hCCCCCCcccHHHHHHHHHhh---hccCcccchHHHHHHHH
Q 002525 220 NISGDSINKAQLKEFWDQISDESFDSRLQT---FFDM--VDTDADGRITEEEVKEIISLS---ASANKLSNIQKQAEEYA 291 (912)
Q Consensus 220 ~~~~G~Id~~EF~~~~~~~~~~~~ee~L~~---aF~~--fDkd~dG~It~eEl~~il~~~---~~~~~l~~~~~~~ee~~ 291 (912)
+.+++.++|++|......+.-.....-+.. .|-. =|...--.++..||+++|... ..+.....+++.+...+
T Consensus 191 ~~~k~dlsf~~f~~ly~~lmfs~~~a~l~e~~~~~~~~~~~~~d~~vV~~~ef~rFL~~~Q~e~~Asdr~av~~~~r~F~ 270 (1267)
T KOG1264|consen 191 GARKDDLSFEQFHLLYKKLMFSQQKAILLEFKKDFILGNTDRPDASVVYLQEFQRFLIHEQQEHWASDRNAVREFMRKFI 270 (1267)
T ss_pred hhccccccHHHHHHHHHHHhhccchhhhhcccchhhhcCCCCccceEeeHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHH
Confidence 223388999999887665322221111111 1211 122233578999999998521 11111122223333333
Q ss_pred HHHhhhcCCCCCCcccHHHHHHHHHhCC
Q 002525 292 AMIMEELDPDNAGYIMIHNLETLLLQAP 319 (912)
Q Consensus 292 ~~i~~e~D~d~dG~Is~~EF~~~l~~~p 319 (912)
++.|.+. ..-++.++||...|-..-
T Consensus 271 ~D~~re~---~EPyl~v~EFv~fLFSre 295 (1267)
T KOG1264|consen 271 DDTMRET---AEPYLFVDEFVTFLFSRE 295 (1267)
T ss_pred hhhhhhc---cCcceeHHHHHHHHhhcc
Confidence 3333332 346799999999986543
No 235
>COG4025 Predicted membrane protein [Function unknown]
Probab=30.48 E-value=2e+02 Score=30.51 Aligned_cols=33 Identities=12% Similarity=0.164 Sum_probs=22.0
Q ss_pred eEEEEEEEecCCEEEEEEecCCCccccCccEEE
Q 002525 606 VKILKVAVYPGNVLALHMSKPQGFKYKSGQYMF 638 (912)
Q Consensus 606 ~~i~~v~~~~~~v~~l~~~~p~~~~~~pGQyv~ 638 (912)
.+---|...-+|..++.+...-.-+.+||-|+-
T Consensus 214 yTfGiV~EV~E~~v~V~V~~DIaaNvkPg~YiV 246 (284)
T COG4025 214 YTFGIVEEVKEDLVEVFVHDDIAANVKPGYYIV 246 (284)
T ss_pred ceeEEEEEEcCCeEEEEEccchhhcCCCCeEEe
Confidence 333344455677888888766566789997753
No 236
>PF09874 DUF2101: Predicted membrane protein (DUF2101); InterPro: IPR018663 This family of conserved hypothetical proteins has no known function.
Probab=30.31 E-value=2.5e+02 Score=29.26 Aligned_cols=40 Identities=18% Similarity=0.171 Sum_probs=28.9
Q ss_pred HHhcc-cceEEEEEEEecCCEEEEEEecCCCccccCccEEE
Q 002525 599 LRSSI-EPVKILKVAVYPGNVLALHMSKPQGFKYKSGQYMF 638 (912)
Q Consensus 599 ~r~~~-~~~~i~~v~~~~~~v~~l~~~~p~~~~~~pGQyv~ 638 (912)
+|+++ ++.+--.|+..-+|+.++.+...-.-+.+||-|.-
T Consensus 136 Fr~ky~RdyTyG~VeEv~~~~v~V~V~dDI~ANVkPg~YwV 176 (206)
T PF09874_consen 136 FRSKYGRDYTYGVVEEVKENLVRVFVHDDIAANVKPGYYWV 176 (206)
T ss_pred eeeeecccceeEEEEEecCCEEEEEEccchhhcCCCCeEEe
Confidence 56553 45565667777889999998876567789997754
No 237
>PRK10639 formate dehydrogenase-O subunit gamma; Provisional
Probab=29.33 E-value=2.4e+02 Score=29.47 Aligned_cols=24 Identities=13% Similarity=0.167 Sum_probs=17.3
Q ss_pred cchhhhHHHHHHHHHHH-HHHHhhh
Q 002525 544 FNAFWYSHHLFIIVYTL-LIVHGIK 567 (912)
Q Consensus 544 ye~F~~~H~l~~i~~vl-l~~H~~~ 567 (912)
.+....+|.+.++++++ +++|.+.
T Consensus 146 ~~~~~~~H~~~a~~~i~~iivHiy~ 170 (211)
T PRK10639 146 IRFALMLHSFAAVALIVVIMVHIYA 170 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46678899999887654 5677653
No 238
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=28.64 E-value=19 Score=38.86 Aligned_cols=14 Identities=14% Similarity=0.676 Sum_probs=0.0
Q ss_pred hhhhhhHhhHHHHH
Q 002525 579 TWMYLAVPMVLYAC 592 (912)
Q Consensus 579 ~w~yl~~~~~l~~~ 592 (912)
+|+.+.+++.||.+
T Consensus 171 ~WL~LFlaiLIWlY 184 (381)
T PF05297_consen 171 YWLLLFLAILIWLY 184 (381)
T ss_dssp --------------
T ss_pred HHHHHHHHHHHHHH
Confidence 46555566677754
No 239
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.20 E-value=50 Score=37.10 Aligned_cols=65 Identities=17% Similarity=0.337 Sum_probs=49.2
Q ss_pred hHHHHHHHHhHhCCCCCCcccHHHHHHHHHhhhccCcccchHHHHHHHHHHHhhhcCCCCCCcccHHHHHHH
Q 002525 243 FDSRLQTFFDMVDTDADGRITEEEVKEIISLSASANKLSNIQKQAEEYAAMIMEELDPDNAGYIMIHNLETL 314 (912)
Q Consensus 243 ~ee~L~~aF~~fDkd~dG~It~eEl~~il~~~~~~~~l~~~~~~~ee~~~~i~~e~D~d~dG~Is~~EF~~~ 314 (912)
..+.++.+|+-+|..++|+|+-+-++++|.... .-+++ .+++..+=+.+|+++-|-|=.++|..-
T Consensus 307 ~s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N--~~vse-----~a~v~l~~~~l~pE~~~iil~~d~lg~ 371 (449)
T KOG2871|consen 307 PSEQLRRNFHAYDPEDNNFISCSGLQIVMTALN--RLVSE-----PAYVMLMRQPLDPESLGIILLEDFLGE 371 (449)
T ss_pred CCHHHHhhhhccCccCCCeeecHHHHHHHHHhc--ccccC-----HHHHHHhcCccChhhcceEEecccccc
Confidence 367899999999999999999999999997321 12222 456666777889988888877775543
No 240
>MTH00016 CYTB cytochrome b; Validated
Probab=26.95 E-value=7.6e+02 Score=28.48 Aligned_cols=29 Identities=10% Similarity=0.350 Sum_probs=13.7
Q ss_pred ccccchhH-HHHHHHHHHHHHHhhhhhhhhc
Q 002525 501 VKGVEGVT-GIIMVVLMVIAFTLATPWFRRN 530 (912)
Q Consensus 501 ~~~~~g~t-Gii~~vl~~i~~~~s~~~~Rr~ 530 (912)
++..++-. |+++++ +.++....+|++-+.
T Consensus 282 LRsiPnKlgGvial~-~siliL~lLP~l~~s 311 (378)
T MTH00016 282 LRSIPNKLGGVVAMF-ASILILFFLPFIFKQ 311 (378)
T ss_pred hhcccchhHHHHHHH-HHHHHHHHHHHHhhc
Confidence 34444444 444443 344334447766543
No 241
>PF14358 DUF4405: Domain of unknown function (DUF4405)
Probab=26.76 E-value=64 Score=26.83 Aligned_cols=24 Identities=33% Similarity=0.145 Sum_probs=20.8
Q ss_pred cchhHHHHHHHHHHHHHHHhhhhh
Q 002525 443 DNLNFHKVIAVGIGIGVILHGGAH 466 (912)
Q Consensus 443 ~~~~fHr~ia~~~~v~~~lH~i~~ 466 (912)
.-...|.+.|.++++++++|.+.|
T Consensus 40 ~~~~iH~~~g~~~~~l~~~Hl~lh 63 (64)
T PF14358_consen 40 FWRNIHLWAGYLFLILIILHLGLH 63 (64)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445799999999999999998765
No 242
>MTH00156 CYTB cytochrome b; Provisional
Probab=26.69 E-value=1e+03 Score=27.26 Aligned_cols=40 Identities=15% Similarity=0.243 Sum_probs=22.0
Q ss_pred hHHHhhcccccccccccCccchhHHHHHHHHHHHHHHHhhh
Q 002525 424 NTITWLRNKTKLGLVVPFDDNLNFHKVIAVGIGIGVILHGG 464 (912)
Q Consensus 424 n~i~~Lr~~t~l~~~v~~d~~~~fHr~ia~~~~v~~~lH~i 464 (912)
....|+.|....+ .....++..+|=.+..++++++.+|..
T Consensus 149 ~l~~~i~Gg~~v~-~~Tl~Rff~lH~llP~~i~~li~~H~~ 188 (356)
T MTH00156 149 DLVQWIWGGFSVD-NATLTRFFTFHFLLPFIILAMVMIHLL 188 (356)
T ss_pred hHHHHhcccCCCC-cchHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 3456666522221 123445556676677777777777753
No 243
>PRK11281 hypothetical protein; Provisional
Probab=26.07 E-value=6e+02 Score=33.67 Aligned_cols=28 Identities=14% Similarity=-0.100 Sum_probs=18.9
Q ss_pred cccCccchhHHHHHHHHHHHHHHHhhhh
Q 002525 438 VVPFDDNLNFHKVIAVGIGIGVILHGGA 465 (912)
Q Consensus 438 ~v~~d~~~~fHr~ia~~~~v~~~lH~i~ 465 (912)
.||=+..-.+||++-+.+++.+.+..+.
T Consensus 610 ~w~~~~~~~~~~~~~~~~~~~~pl~~~~ 637 (1113)
T PRK11281 610 GMPKEQVSHFRRQIVRLSLALLPLLFWS 637 (1113)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3676666778888877776666655543
No 244
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=25.94 E-value=1.4e+02 Score=27.78 Aligned_cols=67 Identities=12% Similarity=0.173 Sum_probs=43.7
Q ss_pred hHhCCCCCCcccHHHHHHHHHhhhccCcc--cc-hHHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhCC
Q 002525 252 DMVDTDADGRITEEEVKEIISLSASANKL--SN-IQKQAEEYAAMIMEELDPDNAGYIMIHNLETLLLQAP 319 (912)
Q Consensus 252 ~~fDkd~dG~It~eEl~~il~~~~~~~~l--~~-~~~~~ee~~~~i~~e~D~d~dG~Is~~EF~~~l~~~p 319 (912)
++||...+-+||.+++++++..... -.+ .+ -++--...+.+|+-|....+...++.+=+..+++-+-
T Consensus 10 RLYDT~tS~YITLedi~~lV~~g~~-f~V~DakTgeDiT~~iL~QII~E~E~~g~~~lp~~~L~qlIr~yg 79 (107)
T TIGR01848 10 RLYDTETSSYVTLEDIRDLVREGRE-FQVVDSKSGDDLTRSILLQIIAEEESGGEPVLSTDFLTQIIRFYG 79 (107)
T ss_pred cccCCCccceeeHHHHHHHHHCCCe-EEEEECCCCchhHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhC
Confidence 4689999999999999999973111 000 00 0122345677777777667777788776777766544
No 245
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=25.93 E-value=33 Score=40.65 Aligned_cols=49 Identities=14% Similarity=0.119 Sum_probs=24.6
Q ss_pred CcccHHHHHHHHHHhcCCChHHHHHHHHhHhCCCCCCcccHHHHHHHHH
Q 002525 224 DSINKAQLKEFWDQISDESFDSRLQTFFDMVDTDADGRITEEEVKEIIS 272 (912)
Q Consensus 224 G~Id~~EF~~~~~~~~~~~~ee~L~~aF~~fDkd~dG~It~eEl~~il~ 272 (912)
|.+..++-+.++......-.++.+...-+..|.+-+|++..+|+.+++.
T Consensus 608 ~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s 656 (680)
T KOG0042|consen 608 AYQAIADVLKVLKSENVGWDEDRLHEELQEADENLNGFVELREFLQLMS 656 (680)
T ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHH
Confidence 4555555555554444344444555555555555555555555554443
No 246
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=25.89 E-value=2.2e+02 Score=28.34 Aligned_cols=64 Identities=11% Similarity=0.197 Sum_probs=42.9
Q ss_pred HHHHhHh---CCCCCCcccHHHHHHHHHhhhcc-CcccchHHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHh
Q 002525 248 QTFFDMV---DTDADGRITEEEVKEIISLSASA-NKLSNIQKQAEEYAAMIMEELDPDNAGYIMIHNLETLLLQ 317 (912)
Q Consensus 248 ~~aF~~f---Dkd~dG~It~eEl~~il~~~~~~-~~l~~~~~~~ee~~~~i~~e~D~d~dG~Is~~EF~~~l~~ 317 (912)
+.+|..| -+.+...++-.-|..+++.+..- .++. ...++.||..+-..+...|+|++|...|..
T Consensus 2 ~~~F~~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t------~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~ 69 (154)
T PF05517_consen 2 EAVFKAFASFGKKNGTEMDSKNFAKLCKDCGIIDKKLT------STDVDIIFSKVKAKGARKITFEQFLEALAE 69 (154)
T ss_dssp HHHHHHHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-------HHHHHHHHHHHT-SS-SEEEHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCccccccHHHHHHHHHHcCCCCCCCc------hHHHHHHHHHhhcCCCcccCHHHHHHHHHH
Confidence 4444444 45667788899999988754321 2232 456777999987667777999999998864
No 247
>COG4097 Predicted ferric reductase [Inorganic ion transport and metabolism]
Probab=25.88 E-value=1.5e+02 Score=33.74 Aligned_cols=66 Identities=23% Similarity=0.321 Sum_probs=43.8
Q ss_pred cceeccccchhHHHHHHHHHHHHHHhhhhhhhhccCCCCCccccccccchhhhHHHHHHHH-HHHHHHHhhhhhh
Q 002525 497 YWWFVKGVEGVTGIIMVVLMVIAFTLATPWFRRNKLNLPKPLKRLTGFNAFWYSHHLFIIV-YTLLIVHGIKLYL 570 (912)
Q Consensus 497 y~~~~~~~~g~tGii~~vl~~i~~~~s~~~~Rr~~~~~~~~l~~~~~ye~F~~~H~l~~i~-~vll~~H~~~~~~ 570 (912)
-|.+.....-.+|++++.+|++++++|++.-+-- +|++ +-+.-|..|...+++ +++++.|-...+.
T Consensus 33 ~~s~~~~~~qf~g~iaL~~msl~~~LA~R~~~iE-----~~~~---GlD~~Y~~HK~~sIlailL~l~H~~~~~~ 99 (438)
T COG4097 33 LLSWRLEFSQFLGFIALALMSLIFLLATRLPLIE-----AWFN---GLDKIYRFHKYTSILAILLLLAHNFILFI 99 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHh-----hhhh---hhhHHhHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3444455566789999999999999887543321 1221 346678899988776 5566888765443
No 248
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=25.23 E-value=66 Score=41.55 Aligned_cols=54 Identities=11% Similarity=0.191 Sum_probs=37.1
Q ss_pred HHHHcCCCCCceeehhhhcccc-cCCCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHH
Q 002525 177 YNELAITTSDGLLHCSMFGECI-GMNKESKEFAGELFRGLCRKHNISGDSINKAQLKEF 234 (912)
Q Consensus 177 F~~ld~~d~dG~I~~~ef~~~l-g~~~~~~~~~~~lf~~l~d~d~~~~G~Id~~EF~~~ 234 (912)
|+.+|. |+.|.|+..+|.+++ |.+-.+...++-+.. -+..|.+ ...||+||+.-
T Consensus 4063 fkeydp-dgkgiiskkdf~kame~~k~ytqse~dflls-cae~den--d~~~y~dfv~r 4117 (5019)
T KOG2243|consen 4063 FKEYDP-DGKGIISKKDFHKAMEGHKHYTQSEIDFLLS-CAEADEN--DMFDYEDFVDR 4117 (5019)
T ss_pred chhcCC-CCCccccHHHHHHHHhccccchhHHHHHHHH-hhccCcc--ccccHHHHHHH
Confidence 566676 888999999999998 333222333445555 3455554 89999999874
No 249
>PF05562 WCOR413: Cold acclimation protein WCOR413; InterPro: IPR008892 This family consists of several WCOR413-like plant cold acclimation proteins.
Probab=25.00 E-value=2.1e+02 Score=29.20 Aligned_cols=38 Identities=18% Similarity=0.294 Sum_probs=28.8
Q ss_pred hhhHHHHHHHHHhhhHHHhhcccccccccccCccchhHHHHHHHHHHHHHHH
Q 002525 410 LKFNMALILLPVCRNTITWLRNKTKLGLVVPFDDNLNFHKVIAVGIGIGVIL 461 (912)
Q Consensus 410 l~~n~~lill~~~Rn~i~~Lr~~t~l~~~v~~d~~~~fHr~ia~~~~v~~~l 461 (912)
-.+..|++++........|+|| .+=||+|.++++.-+.
T Consensus 72 tslLVPyi~lslPs~if~~~rG--------------e~G~WiAFlavv~RLF 109 (187)
T PF05562_consen 72 TSLLVPYIFLSLPSVIFNWFRG--------------EYGKWIAFLAVVLRLF 109 (187)
T ss_pred HHHHHHHHHHhCcHHHHHHHhc--------------cccHHHHHHHHHHHHh
Confidence 3466788888888888899998 4567998887766543
No 250
>PLN02952 phosphoinositide phospholipase C
Probab=24.78 E-value=2e+02 Score=35.19 Aligned_cols=84 Identities=14% Similarity=0.177 Sum_probs=54.0
Q ss_pred CCceeehhhhcccc---cCCC-CCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhcCC--ChHHHHHHHHhHh----
Q 002525 185 SDGLLHCSMFGECI---GMNK-ESKEFAGELFRGLCRKHNISGDSINKAQLKEFWDQISDE--SFDSRLQTFFDMV---- 254 (912)
Q Consensus 185 ~dG~I~~~ef~~~l---g~~~-~~~~~~~~lf~~l~d~d~~~~G~Id~~EF~~~~~~~~~~--~~ee~L~~aF~~f---- 254 (912)
+.|.+++++|..+. .... .....+.++|..+.. ++ +.++.++|..++...... ...+..+.+|+.+
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~-~~---~~mt~~~l~~FL~~~Q~e~~~~~~~~~~i~~~~~~~~ 88 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSV-GG---GHMGADQLRRFLVLHQDELDCTLAEAQRIVEEVINRR 88 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhC-CC---CccCHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHhhc
Confidence 46899999997554 2210 134568888886542 22 689999999999886543 2344555555433
Q ss_pred ---CCCCCCcccHHHHHHHHH
Q 002525 255 ---DTDADGRITEEEVKEIIS 272 (912)
Q Consensus 255 ---Dkd~dG~It~eEl~~il~ 272 (912)
.+.+.+.++.++|...|.
T Consensus 89 ~~~~~~~~~~l~~~~F~~~l~ 109 (599)
T PLN02952 89 HHVTRYTRHGLNLDDFFHFLL 109 (599)
T ss_pred cccccccccCcCHHHHHHHHc
Confidence 122345688888888874
No 251
>MTH00131 CYTB cytochrome b; Provisional
Probab=24.12 E-value=8.6e+02 Score=28.04 Aligned_cols=21 Identities=19% Similarity=0.506 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHhhhhhhhhc
Q 002525 509 GIIMVVLMVIAFTLATPWFRRN 530 (912)
Q Consensus 509 Gii~~vl~~i~~~~s~~~~Rr~ 530 (912)
|++++ +++++....+|++.+.
T Consensus 290 Gv~~~-~~~i~~L~lLPfi~~~ 310 (380)
T MTH00131 290 GVLAL-LFSILVLMVVPILHTS 310 (380)
T ss_pred HHHHH-HHHHHHHHHHHHHccC
Confidence 44433 3344444556666554
No 252
>MTH00053 CYTB cytochrome b; Provisional
Probab=23.50 E-value=9.1e+02 Score=27.88 Aligned_cols=22 Identities=9% Similarity=0.105 Sum_probs=10.3
Q ss_pred ccchhHHHHHHHHHHHHHHHhh
Q 002525 442 DDNLNFHKVIAVGIGIGVILHG 463 (912)
Q Consensus 442 d~~~~fHr~ia~~~~v~~~lH~ 463 (912)
.++..+|=.+..++++++.+|.
T Consensus 177 ~Rff~lH~~lP~~i~~l~~~Hl 198 (381)
T MTH00053 177 NRFYSLHYLLPFILAGLALVHL 198 (381)
T ss_pred hHHHHHHHHHHHHHHHHHHhhH
Confidence 3444445444444444444443
No 253
>KOG4004 consensus Matricellular protein Osteonectin/SPARC/BM-40 [Extracellular structures]
Probab=23.41 E-value=27 Score=35.76 Aligned_cols=54 Identities=17% Similarity=0.213 Sum_probs=39.1
Q ss_pred HHhhCCCCCCcccHHHHHHHHHHhcCCChHHHHHHHHhHhCCCCCCcccHHHHHHHHH
Q 002525 215 LCRKHNISGDSINKAQLKEFWDQISDESFDSRLQTFFDMVDTDADGRITEEEVKEIIS 272 (912)
Q Consensus 215 l~d~d~~~~G~Id~~EF~~~~~~~~~~~~ee~L~~aF~~fDkd~dG~It~eEl~~il~ 272 (912)
++..-.+ |+++-.|+.-....+ ..-+.-+..+|.-+|.|+||+|+.+|+...+.
T Consensus 196 ld~~p~d--~~~sh~el~pl~ap~--ipme~c~~~f~e~cd~~nd~~ial~ew~~c~g 249 (259)
T KOG4004|consen 196 LDQHPID--GYLSHTELAPLRAPL--IPMEHCTTRFFETCDLDNDKYIALDEWAGCFG 249 (259)
T ss_pred ccCCCcc--ccccccccccccCCc--ccHHhhchhhhhcccCCCCCceeHHHhhcccC
Confidence 4444444 888888876543322 23456688999999999999999999987663
No 254
>MTH00086 CYTB cytochrome b; Provisional
Probab=22.97 E-value=1.2e+03 Score=26.73 Aligned_cols=27 Identities=19% Similarity=0.320 Sum_probs=12.7
Q ss_pred cccchhH-HHHHHHHHHHHHHhhhhhhhh
Q 002525 502 KGVEGVT-GIIMVVLMVIAFTLATPWFRR 529 (912)
Q Consensus 502 ~~~~g~t-Gii~~vl~~i~~~~s~~~~Rr 529 (912)
+..++-. |++++ +++++....+|+.-+
T Consensus 270 RsiP~KlgGvl~~-~~silvL~~lP~l~~ 297 (355)
T MTH00086 270 RAIPNKVLGVIAL-LMSIVVFYFFIFVNN 297 (355)
T ss_pred HhhhhhhHHHHHH-HHHHHHHHHHHHHcc
Confidence 3444333 44443 334445555675543
No 255
>PLN02844 oxidoreductase/ferric-chelate reductase
Probab=22.62 E-value=1.1e+02 Score=38.46 Aligned_cols=55 Identities=24% Similarity=0.230 Sum_probs=39.8
Q ss_pred cchhHHHHHHHHHHHHHHhhhhhhhhccCCCCCccccccc--cchhhhHHHHHHHH-HHHHHHHhhh
Q 002525 504 VEGVTGIIMVVLMVIAFTLATPWFRRNKLNLPKPLKRLTG--FNAFWYSHHLFIIV-YTLLIVHGIK 567 (912)
Q Consensus 504 ~~g~tGii~~vl~~i~~~~s~~~~Rr~~~~~~~~l~~~~~--ye~F~~~H~l~~i~-~vll~~H~~~ 567 (912)
+..-+|+++..+|.++++++. |. +++.++++ ||.|...|+.++-+ +++..+|+..
T Consensus 155 va~R~G~la~~~Lpll~llv~---Rn------n~l~~ltGis~e~~i~fHrWlGr~~~llallH~i~ 212 (722)
T PLN02844 155 VATRFGLLAEACLALLLLPVL---RG------LALFRLLGIQFEASVRYHVWLGTSMIFFATVHGAS 212 (722)
T ss_pred HHHHHHHHHHHHHHHHHHHHh---cc------cHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445678888888888777664 22 34555555 99999999999865 5566899864
No 256
>PLN02222 phosphoinositide phospholipase C 2
Probab=22.36 E-value=2.5e+02 Score=34.22 Aligned_cols=66 Identities=14% Similarity=0.221 Sum_probs=38.1
Q ss_pred HHHHHHHhHhCCCCCCcccHHHHHHHHHhhhccCcccchHHHHHHHHHHHhhhcCC-CCCCcccHHHHHHHHHhC
Q 002525 245 SRLQTFFDMVDTDADGRITEEEVKEIISLSASANKLSNIQKQAEEYAAMIMEELDP-DNAGYIMIHNLETLLLQA 318 (912)
Q Consensus 245 e~L~~aF~~fDkd~dG~It~eEl~~il~~~~~~~~l~~~~~~~ee~~~~i~~e~D~-d~dG~Is~~EF~~~l~~~ 318 (912)
+++..+|..+-. ++.+|.++|..+|...-.....+ ++.+..||+.+.. -+.+.++++.|...|...
T Consensus 25 ~ei~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~------~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~s~ 91 (581)
T PLN02222 25 REIKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKAT------REDAQSIINSASSLLHRNGLHLDAFFKYLFGD 91 (581)
T ss_pred HHHHHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCC------HHHHHHHHHhhhhhhhccCcCHHHHHHHhcCC
Confidence 467777777643 35777777777775322111111 2334445554321 235679999999988763
No 257
>PF13706 PepSY_TM_3: PepSY-associated TM helix
Probab=22.26 E-value=86 Score=23.26 Aligned_cols=18 Identities=11% Similarity=0.325 Sum_probs=13.1
Q ss_pred hhHHHHHHHHHHHHHHHh
Q 002525 445 LNFHKVIAVGIGIGVILH 462 (912)
Q Consensus 445 ~~fHr~ia~~~~v~~~lH 462 (912)
...|+|+|.++.++..+=
T Consensus 5 ~~~H~W~Gl~~g~~l~~~ 22 (37)
T PF13706_consen 5 RKLHRWLGLILGLLLFVI 22 (37)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 468999998876665443
No 258
>PLN00151 potassium transporter; Provisional
Probab=22.08 E-value=1.7e+03 Score=28.41 Aligned_cols=20 Identities=35% Similarity=0.871 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q 002525 368 IMLLWLGIVGGLFAYKFVQY 387 (912)
Q Consensus 368 ~i~l~~~~n~~lf~~~~~~y 387 (912)
++++|++.+.++-+|...+|
T Consensus 303 ImllWFl~i~~iGiynI~~~ 322 (852)
T PLN00151 303 ALALWFCSLGGIGIYNLVKY 322 (852)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 56788888888888877777
No 259
>MTH00100 CYTB cytochrome b; Provisional
Probab=21.76 E-value=5.3e+02 Score=29.75 Aligned_cols=21 Identities=19% Similarity=0.469 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHhhhhhhhhc
Q 002525 509 GIIMVVLMVIAFTLATPWFRRN 530 (912)
Q Consensus 509 Gii~~vl~~i~~~~s~~~~Rr~ 530 (912)
|++++ ++.++....+|++.+.
T Consensus 290 Gv~~~-~~~~~~l~lLPfi~~~ 310 (379)
T MTH00100 290 GVLAL-LLSILILAIIPLLHTS 310 (379)
T ss_pred HHHHH-HHHHHHHHHHHHHhcc
Confidence 44433 3344445556766554
No 260
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=21.72 E-value=73 Score=34.92 Aligned_cols=90 Identities=18% Similarity=0.152 Sum_probs=49.3
Q ss_pred HHHHHcCCCCCceeehhhhcccc--------c-CCCCC--HHHHHHHHH----HHHhhCCCCCCcccHHHHHHHHHHhcC
Q 002525 176 RYNELAITTSDGLLHCSMFGECI--------G-MNKES--KEFAGELFR----GLCRKHNISGDSINKAQLKEFWDQISD 240 (912)
Q Consensus 176 ~F~~ld~~d~dG~I~~~ef~~~l--------g-~~~~~--~~~~~~lf~----~l~d~d~~~~G~Id~~EF~~~~~~~~~ 240 (912)
-|...|- |+||.++-.|+...+ . .+++. .+..++... .+...|.+.+--|+.+||+.......-
T Consensus 249 FF~LHD~-NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~~t~~kef 327 (442)
T KOG3866|consen 249 FFALHDL-NSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLNDTDNKEF 327 (442)
T ss_pred heeeecc-CCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhhhhccc
Confidence 3555566 889999988887665 1 11111 122222222 123344444578899999888766444
Q ss_pred CChHHHHHHHHhHhCCCCCCcccHHHHHHHHH
Q 002525 241 ESFDSRLQTFFDMVDTDADGRITEEEVKEIIS 272 (912)
Q Consensus 241 ~~~ee~L~~aF~~fDkd~dG~It~eEl~~il~ 272 (912)
+.+.+.... .+.--.-|.+||+++=.
T Consensus 328 ~~p~e~WEt------l~q~~~yTeEEL~~fE~ 353 (442)
T KOG3866|consen 328 NPPKEEWET------LGQKKVYTEEELQQFER 353 (442)
T ss_pred CCcchhhhh------hcccccccHHHHHHHHH
Confidence 444333222 23344567777776543
No 261
>KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism]
Probab=21.69 E-value=1.5e+02 Score=35.34 Aligned_cols=97 Identities=21% Similarity=0.375 Sum_probs=48.9
Q ss_pred hhhccCCCCCccccccccchhhhHHHHHHHHHHHHHHHhhhhhhcccccccchhhhh--hHhhHHHHHHHHHHHHHh---
Q 002525 527 FRRNKLNLPKPLKRLTGFNAFWYSHHLFIIVYTLLIVHGIKLYLTKKWYQKTTWMYL--AVPMVLYACERLTRALRS--- 601 (912)
Q Consensus 527 ~Rr~~~~~~~~l~~~~~ye~F~~~H~l~~i~~vll~~H~~~~~~~~~w~~~~~w~yl--~~~~~l~~~dr~~R~~r~--- 601 (912)
+||-..++.+.|-|-.+...|.|--.+|.+++..+++-.....-... .....|.|+ ++-++++++|.++|++..
T Consensus 74 ~Rr~q~~vYN~LERPrGWkaf~YH~~VFllVl~CLILsV~STi~e~~-~~a~~~L~~LEiv~IV~Fg~EfivRlWSAGC~ 152 (654)
T KOG1419|consen 74 YRRIQNKVYNFLERPRGWKAFLYHFFVFLLVLSCLILSVLSTIEEYE-KLASGILYILEIVMIVFFGLEFIVRLWSAGCC 152 (654)
T ss_pred HHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHhcccHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 34443444556666667878877222333334334433221110000 011334443 345677889999998533
Q ss_pred -ccc-----------ceEEEEEEEecCCEEEEEEe
Q 002525 602 -SIE-----------PVKILKVAVYPGNVLALHMS 624 (912)
Q Consensus 602 -~~~-----------~~~i~~v~~~~~~v~~l~~~ 624 (912)
+|+ ++.+..+-+++..+..|.+.
T Consensus 153 ~rYrG~~GRLrFarkp~cvIDiivi~Asi~vl~~g 187 (654)
T KOG1419|consen 153 CRYRGWYGRLRFARKPFCVIDIIVIIASIAVLAAG 187 (654)
T ss_pred cccccceeeEEeecCCceEEEEeeeeeeeeEEEec
Confidence 222 34456666666666666654
No 262
>PRK13553 fumarate reductase cytochrome b-556 subunit; Provisional
Probab=21.53 E-value=4e+02 Score=28.93 Aligned_cols=109 Identities=14% Similarity=0.205 Sum_probs=54.0
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCccCCCCCCccceeccccchhHHHHHHHHHHHHHHhhhh
Q 002525 446 NFHKVIAVGIGIGVILHGGAHLTCDFPRLLHATEEEYEPMKPYFGDEQPDNYWWFVKGVEGVTGIIMVVLMVIAFTLATP 525 (912)
Q Consensus 446 ~fHr~ia~~~~v~~~lH~i~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~g~tGii~~vl~~i~~~~s~~ 525 (912)
..|-..|.+..++.+.|.+.-... -.+.+.++.+..++.. .+ . .-.+.+-+++++++++++++++-+.-
T Consensus 26 ~~qSltGviLglFl~~Hm~~~ssi------l~G~~afn~va~f~E~-~~---~-~~~g~p~~~sl~~~~I~l~~l~Ha~l 94 (258)
T PRK13553 26 FLQSATGLFLGLFMWAHMFFVSTI------LISDDAMYKVAKFFEG-SF---F-FKAGEPALVSFVAAGVILIFVVHAFL 94 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------HcCHHHHHHHHHHHhh-Cc---c-ccCCcchhHHHHHHHHHHHHHHHHHH
Confidence 478899999999999997643211 1122333222222211 01 0 00112234566666666666666766
Q ss_pred hhhhccCCCCCccccccccchh-----------hhHHHHHHHH-HHHHHHHhhhhh
Q 002525 526 WFRRNKLNLPKPLKRLTGFNAF-----------WYSHHLFIIV-YTLLIVHGIKLY 569 (912)
Q Consensus 526 ~~Rr~~~~~~~~l~~~~~ye~F-----------~~~H~l~~i~-~vll~~H~~~~~ 569 (912)
-.|+ .|.-.++...+..+ |+...+.+++ +++..+|-....
T Consensus 95 alrk----~P~n~~q~~~~r~h~~~m~H~DT~lW~~Q~iTG~ilf~~~~~Hl~~i~ 146 (258)
T PRK13553 95 AMRK----FPINYRQYQIFRTHKHLMKHGDTSLWFIQAFTGFAMFFLASVHLYVML 146 (258)
T ss_pred HHhh----CCCCHHHHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHhhh
Confidence 6774 34333332112111 3344455444 566678876543
No 263
>PF09842 DUF2069: Predicted membrane protein (DUF2069); InterPro: IPR018643 This family of prokaryotic proteins has no known function but is thought to be a membrane protein.
Probab=20.87 E-value=6.9e+02 Score=23.34 Aligned_cols=52 Identities=19% Similarity=0.135 Sum_probs=32.8
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCccCCCCCCccceeccccchhHHHHHHHHHHHHHHhhhh
Q 002525 446 NFHKVIAVGIGIGVILHGGAHLTCDFPRLLHATEEEYEPMKPYFGDEQPDNYWWFVKGVEGVTGIIMVVLMVIAFTLATP 525 (912)
Q Consensus 446 ~fHr~ia~~~~v~~~lH~i~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~g~tGii~~vl~~i~~~~s~~ 525 (912)
.=|.|.+.++.+.. +|++..... .+. .-+.|++.+++..++|+.++-
T Consensus 54 ~t~~W~sfv~L~YF-~~gv~~a~~-----------------------~~~---------~~~~a~~e~~ls~~lF~~~~~ 100 (109)
T PF09842_consen 54 YTYAWASFVILLYF-IHGVTRAWS-----------------------DPG---------ERWLAWLELLLSVLLFVGAML 100 (109)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHhc-----------------------Ccc---------hhHHHHHHHHHHHHHHHHHHH
Confidence 34889987766554 788765422 111 124577777777777788877
Q ss_pred hhhhc
Q 002525 526 WFRRN 530 (912)
Q Consensus 526 ~~Rr~ 530 (912)
+.|-|
T Consensus 101 y~R~r 105 (109)
T PF09842_consen 101 YARWR 105 (109)
T ss_pred HHHHH
Confidence 77765
No 264
>MTH00033 CYTB cytochrome b; Provisional
Probab=20.73 E-value=5.5e+02 Score=29.68 Aligned_cols=21 Identities=24% Similarity=0.490 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHhhhhhhhhc
Q 002525 509 GIIMVVLMVIAFTLATPWFRRN 530 (912)
Q Consensus 509 Gii~~vl~~i~~~~s~~~~Rr~ 530 (912)
|++++ ++++++...+|++-|+
T Consensus 289 Gvlal-~~silvL~~lP~~~~~ 309 (383)
T MTH00033 289 GVLAL-FASILVLLLMPILDRS 309 (383)
T ss_pred HHHHH-HHHHHHHHHHHHhccc
Confidence 44444 3455555667776544
Done!