BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002526
(912 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3LD8|A Chain A, Structure Of Jmjd6 And Fab Fragments
pdb|3LDB|A Chain A, Structure Of Jmjd6 Complexd With Alpha-Ketoglutarate And
Fab Fragment
Length = 334
Score = 186 bits (473), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 98/238 (41%), Positives = 136/238 (57%), Gaps = 12/238 (5%)
Query: 146 ECAEEPILLSGLADTWPARNTWTIDQLLTRYGDTAFRISQ-RSVRSISMKFKDYVAYMNV 204
E +P++L + W A+ WT+++L +Y + F+ + S+ MK K Y+ YM
Sbjct: 64 ERPYKPVVLLNAQEGWSAQEKWTLERLKRKYRNQKFKCGEDNDGYSVKMKMKYYIEYMES 123
Query: 205 QHDEDPLYIFDYKFGENAQ--GLLEDYRVPDLFQEDLFNVLDGDMRPSYRWVIIGPQRSG 262
D+ PLYIFD +GE+ + LLEDY+VP F +DLF RP YRW ++GP RSG
Sbjct: 124 TRDDSPLYIFDSSYGEHPKRRKLLEDYKVPKFFTDDLFQYAGEKRRPPYRWFVMGPPRSG 183
Query: 263 ASWHVDPALTSAWNTLLCGRKRWALYPPGRVPLGVTVHVNEDDGDVNIETPSSLEWWLDF 322
H+DP TSAWN L+ G KRW L+P P + + V D+G + ++ W+
Sbjct: 184 TGIHIDPLGTSAWNALVQGHKRWCLFPTS-TPREL-IKVTRDEG--GNQQDEAITWFNVI 239
Query: 323 YPLLA-----DDDKPIECTQLPGETIVVPSGWWHCILNLETTIAVTQNFVDSKNFEFV 375
YP + KP+E Q PGET+ VP GWWH +LNL+TTIA+TQNF S NF V
Sbjct: 240 YPRTQLPTWPPEFKPLEILQKPGETVFVPGGWWHVVLNLDTTIAITQNFASSTNFPVV 297
>pdb|3K2O|A Chain A, Structure Of An Oxygenase
pdb|3K2O|B Chain B, Structure Of An Oxygenase
Length = 336
Score = 180 bits (456), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 96/238 (40%), Positives = 133/238 (55%), Gaps = 12/238 (5%)
Query: 146 ECAEEPILLSGLADTWPARNTWTIDQLLTRYGDTAFRISQ-RSVRSISMKFKDYVAYMNV 204
E +P++L + W A+ WT+++L +Y + F+ + S+ K K Y+ Y
Sbjct: 65 ERPYKPVVLLNAQEGWSAQEKWTLERLKRKYRNQKFKCGEDNDGYSVKXKXKYYIEYXES 124
Query: 205 QHDEDPLYIFDYKFGENAQ--GLLEDYRVPDLFQEDLFNVLDGDMRPSYRWVIIGPQRSG 262
D+ PLYIFD +GE+ + LLEDY+VP F +DLF RP YRW + GP RSG
Sbjct: 125 TRDDSPLYIFDSSYGEHPKRRKLLEDYKVPKFFTDDLFQYAGEKRRPPYRWFVXGPPRSG 184
Query: 263 ASWHVDPALTSAWNTLLCGRKRWALYPPGRVPLGVTVHVNEDDGDVNIETPSSLEWWLDF 322
H+DP TSAWN L+ G KRW L+P P + + V D+G + ++ W+
Sbjct: 185 TGIHIDPLGTSAWNALVQGHKRWCLFPTS-TPREL-IKVTRDEG--GNQQDEAITWFNVI 240
Query: 323 YPLLA-----DDDKPIECTQLPGETIVVPSGWWHCILNLETTIAVTQNFVDSKNFEFV 375
YP + KP+E Q PGET+ VP GWWH +LNL+TTIA+TQNF S NF V
Sbjct: 241 YPRTQLPTWPPEFKPLEILQKPGETVFVPGGWWHVVLNLDTTIAITQNFASSTNFPVV 298
>pdb|3UYJ|A Chain A, Crystal Structure Of Jmjd5 Catalytic Core Domain In
Complex With Nickle And Alpha-Kg
pdb|3UYJ|B Chain B, Crystal Structure Of Jmjd5 Catalytic Core Domain In
Complex With Nickle And Alpha-Kg
Length = 248
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/232 (21%), Positives = 93/232 (40%), Gaps = 23/232 (9%)
Query: 140 REEFDRECAEEPILLSGLADTWPARNTWTIDQLLTRYG------DTAFRISQRSVRSISM 193
RE+F P++L G+AD WP W+++ + G + R + M
Sbjct: 28 REQF--LVPGRPVILKGVADHWPCMQKWSLEYIQEIAGCRTVPVEVGSRYTDEEWSQTLM 85
Query: 194 KFKDYVAYMNVQHDEDPLYIFDYKFGENAQGLLEDYRVPDLFQEDLFNVLDGDMRPSYRW 253
++++ V D Y+ ++ + L +D +P D ++ DG+
Sbjct: 86 TVNEFISKYIVNEPRDVGYLAQHQLFDQIPELKQDISIP-----DYCSLGDGEEEEITIN 140
Query: 254 VIIGPQRSGASWHVDPALTSAWNTLLCGRKRWALYPPGR--VPLGVTVHVNEDDGDVNIE 311
GPQ + + H DP + + GRK LY P H+ + V++E
Sbjct: 141 AWFGPQGTISPLHQDPQ--QNFLVQVMGRKYIRLYSPQESGALYPHDTHLLHNTSQVDVE 198
Query: 312 TPSSLEWWLDFYPLLADDDKPIECTQLPGETIVVPSGWWHCILNLETTIAVT 363
P L+ +P A + C PGE + +P +WH + L+ + +V+
Sbjct: 199 NPD-----LEKFPKFAKAPF-LSCILSPGEILFIPVKYWHYVRALDLSFSVS 244
>pdb|4AAP|A Chain A, Crystal Structure Of Jmjd5 Domain Of Human Lysine-Specific
Demethylase 8 (Kdm8) In Complex With N-Oxalylglycine
(Nog)
pdb|4AAP|B Chain B, Crystal Structure Of Jmjd5 Domain Of Human Lysine-Specific
Demethylase 8 (Kdm8) In Complex With N-Oxalylglycine
(Nog)
Length = 239
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/221 (21%), Positives = 89/221 (40%), Gaps = 21/221 (9%)
Query: 151 PILLSGLADTWPARNTWTIDQLLTRYG------DTAFRISQRSVRSISMKFKDYVAYMNV 204
P++L G+AD WP W+++ + G + R + M ++++ V
Sbjct: 28 PVILKGVADHWPCMQKWSLEYIQEIAGCRTVPVEVGSRYTDEEWSQTLMTVNEFISKYIV 87
Query: 205 QHDEDPLYIFDYKFGENAQGLLEDYRVPDLFQEDLFNVLDGDMRPSYRWVIIGPQRSGAS 264
D Y+ ++ + L +D +P D ++ DG+ GPQ + +
Sbjct: 88 NEPRDVGYLAQHQLFDQIPELKQDISIP-----DYCSLGDGEEEEITINAWFGPQGTISP 142
Query: 265 WHVDPALTSAWNTLLCGRKRWALYPPGR--VPLGVTVHVNEDDGDVNIETPSSLEWWLDF 322
H DP + + GRK LY P H+ + V++E P L+
Sbjct: 143 LHQDPQ--QNFLVQVMGRKYIRLYSPQESGALYPHDTHLLHNTSQVDVENPD-----LEK 195
Query: 323 YPLLADDDKPIECTQLPGETIVVPSGWWHCILNLETTIAVT 363
+P A + C PGE + +P +WH + L+ + +V+
Sbjct: 196 FPKFAKAPF-LSCILSPGEILFIPVKYWHYVRALDLSFSVS 235
>pdb|4GJZ|A Chain A, Jmjd5 In Complex With 2-Oxoglutarate
Length = 235
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/232 (21%), Positives = 93/232 (40%), Gaps = 23/232 (9%)
Query: 140 REEFDRECAEEPILLSGLADTWPARNTWTIDQLLTRYG------DTAFRISQRSVRSISM 193
RE+F P++L G+AD WP W+++ + G + R + M
Sbjct: 15 REQF--LVPGRPVILKGVADHWPCMQKWSLEYIQEIAGCRTVPVEVGSRYTDEEWSQTLM 72
Query: 194 KFKDYVAYMNVQHDEDPLYIFDYKFGENAQGLLEDYRVPDLFQEDLFNVLDGDMRPSYRW 253
++++ V D Y+ ++ + L +D +P D ++ DG+
Sbjct: 73 TVNEFISKYIVNEPRDVGYLAQHQLFDQIPELKQDISIP-----DYCSLGDGEEEEITIN 127
Query: 254 VIIGPQRSGASWHVDPALTSAWNTLLCGRKRWALYPPGR--VPLGVTVHVNEDDGDVNIE 311
GPQ + + H DP + + GRK LY P H+ + V++E
Sbjct: 128 AWFGPQGTISPLHQDPQ--QNFLVQVMGRKYIRLYSPQESGALYPHDTHLLHNTSQVDVE 185
Query: 312 TPSSLEWWLDFYPLLADDDKPIECTQLPGETIVVPSGWWHCILNLETTIAVT 363
P L+ +P A + C PGE + +P +WH + L+ + +V+
Sbjct: 186 NPD-----LEKFPKFAKAPF-LSCILSPGEILFIPVKYWHYVRALDLSFSVS 231
>pdb|4GJY|A Chain A, Jmjd5 In Complex With N-Oxalylglycine
Length = 235
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/221 (21%), Positives = 88/221 (39%), Gaps = 21/221 (9%)
Query: 151 PILLSGLADTWPARNTWTIDQLLTRYG------DTAFRISQRSVRSISMKFKDYVAYMNV 204
P++L G+AD WP W+++ + G + R + ++++ V
Sbjct: 24 PVILKGVADHWPCXQKWSLEYIQEIAGCRTVPVEVGSRYTDEEWSQTLXTVNEFISKYIV 83
Query: 205 QHDEDPLYIFDYKFGENAQGLLEDYRVPDLFQEDLFNVLDGDMRPSYRWVIIGPQRSGAS 264
D Y+ ++ + L +D +P D ++ DG+ GPQ + +
Sbjct: 84 NEPRDVGYLAQHQLFDQIPELKQDISIP-----DYCSLGDGEEEEITINAWFGPQGTISP 138
Query: 265 WHVDPALTSAWNTLLCGRKRWALYPPGR--VPLGVTVHVNEDDGDVNIETPSSLEWWLDF 322
H DP + + GRK LY P H+ + V++E P L+
Sbjct: 139 LHQDPQ--QNFLVQVXGRKYIRLYSPQESGALYPHDTHLLHNTSQVDVENPD-----LEK 191
Query: 323 YPLLADDDKPIECTQLPGETIVVPSGWWHCILNLETTIAVT 363
+P A + C PGE + +P +WH + L+ + +V+
Sbjct: 192 FPKFAKAPF-LSCILSPGEILFIPVKYWHYVRALDLSFSVS 231
>pdb|3KV5|D Chain D, Structure Of Kiaa1718, Human Jumonji Demethylase, In
Complex With N-Oxalylglycine
pdb|3KV5|A Chain A, Structure Of Kiaa1718, Human Jumonji Demethylase, In
Complex With N-Oxalylglycine
pdb|3KV6|A Chain A, Structure Of Kiaa1718, Human Jumonji Demethylase, In
Complex With Alpha-Ketoglutarate
pdb|3KV6|D Chain D, Structure Of Kiaa1718, Human Jumonji Demethylase, In
Complex With Alpha-Ketoglutarate
Length = 488
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 53/121 (43%), Gaps = 15/121 (12%)
Query: 252 RWVIIGPQRSGASWHVDPALTSAWNTLLCGRKRWALYPPGRVPLGVTVHVNEDDGDVNIE 311
++ ++G Q S +H+D TS W +L G K + L P D+ E
Sbjct: 268 KYCLMGVQDSYTDFHIDFGGTSVWYHVLWGEKIFYLIKP------------TDENLARYE 315
Query: 312 TPSSLEWWLDFYPLLADD-DKPIECTQLPGETIVVPSGWWHCILNLETTIAVTQNFVDSK 370
+ SS + + D DK +C G T+ VP+GW H +L + +A NF+ +
Sbjct: 316 SWSSSVTQSEVF--FGDKVDKCYKCVVKQGHTLFVPTGWIHAVLTSQDCMAFGGNFLHNL 373
Query: 371 N 371
N
Sbjct: 374 N 374
>pdb|3KV9|A Chain A, Structure Of Kiaa1718 Jumonji Domain
pdb|3KVA|A Chain A, Structure Of Kiaa1718 Jumonji Domain In Complex With
Alpha- Ketoglutarate
pdb|3KVB|A Chain A, Structure Of Kiaa1718 Jumonji Domain In Complex With N-
Oxalylglycine
pdb|3U78|A Chain A, E67-2 Selectively Inhibits Kiaa1718, A Human Histone H3
Lysine 9 Jumonji Demethylase
Length = 397
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 53/121 (43%), Gaps = 15/121 (12%)
Query: 252 RWVIIGPQRSGASWHVDPALTSAWNTLLCGRKRWALYPPGRVPLGVTVHVNEDDGDVNIE 311
++ ++G Q S +H+D TS W +L G K + L P D+ E
Sbjct: 177 KYCLMGVQDSYTDFHIDFGGTSVWYHVLWGEKIFYLIKP------------TDENLARYE 224
Query: 312 TPSSLEWWLDFYPLLADD-DKPIECTQLPGETIVVPSGWWHCILNLETTIAVTQNFVDSK 370
+ SS + + D DK +C G T+ VP+GW H +L + +A NF+ +
Sbjct: 225 SWSSSVTQSEVF--FGDKVDKCYKCVVKQGHTLFVPTGWIHAVLTSQDCMAFGGNFLHNL 282
Query: 371 N 371
N
Sbjct: 283 N 283
>pdb|3KV4|A Chain A, Structure Of Phf8 In Complex With Histone H3
Length = 447
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 77/187 (41%), Gaps = 19/187 (10%)
Query: 193 MKFKDYVAYMNVQHDEDPLYIFDYKFGENA-QGLLEDYRVPDLFQ--EDLFNVLDGDMRP 249
MK D+V Y E L + +F + L+E ++ E+L+ RP
Sbjct: 170 MKLGDFVKYYYSGKREKVLNVISLEFSDTRLSNLVETPKIVRKLSWVENLWPEECVFERP 229
Query: 250 SY-RWVIIGPQRSGASWHVDPALTSAWNTLLCGRKRWALYPPGRVPLGVTVHVNEDDGDV 308
+ ++ ++ + S +H+D TS W +L G K + L P L +
Sbjct: 230 NVQKYCLMSVRDSYTDFHIDFGGTSVWYHVLKGEKIFYLIRPTNANLTL----------- 278
Query: 309 NIETPSSLEWWLDFYPLLADD-DKPIECTQLPGETIVVPSGWWHCILNLETTIAVTQNFV 367
E SS + + D DK +C+ G+T+ +P+GW H +L +A NF+
Sbjct: 279 -FECWSSSSNQNEMF--FGDQVDKCYKCSVKQGQTLFIPTGWIHAVLTPVDCLAFGGNFL 335
Query: 368 DSKNFEF 374
S N E
Sbjct: 336 HSLNIEM 342
>pdb|3K3N|A Chain A, Crystal Structure Of The Catalytic Core Domain Of Human
Phf8
pdb|3K3O|A Chain A, Crystal Structure Of The Catalytic Core Domain Of Human
Phf8 Complexed With Alpha-Ketoglutarate
Length = 371
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 77/186 (41%), Gaps = 19/186 (10%)
Query: 193 MKFKDYVAYMNVQHDEDPLYIFDYKFGEN-AQGLLEDYRVPDLFQ--EDLFNVLDGDMRP 249
MK D+V Y E L + +F + L+E ++ E+L+ RP
Sbjct: 86 MKLGDFVKYYYSGKREKVLNVISLEFSDTRLSNLVETPKIVRKLSWVENLWPEECVFERP 145
Query: 250 SY-RWVIIGPQRSGASWHVDPALTSAWNTLLCGRKRWALYPPGRVPLGVTVHVNEDDGDV 308
+ ++ ++ + S +H+D TS W +L G K + L P L +
Sbjct: 146 NVQKYCLMSVRDSYTDFHIDFGGTSVWYHVLKGEKIFYLIRPTNANLTL----------- 194
Query: 309 NIETPSSLEWWLDFYPLLADD-DKPIECTQLPGETIVVPSGWWHCILNLETTIAVTQNFV 367
E SS + + D DK +C+ G+T+ +P+GW H +L +A NF+
Sbjct: 195 -FECWSSSSNQNEMF--FGDQVDKCYKCSVKQGQTLFIPTGWIHAVLTPVDCLAFGGNFL 251
Query: 368 DSKNFE 373
S N E
Sbjct: 252 HSLNIE 257
>pdb|2WWU|A Chain A, Crystal Structure Of The Catalytic Domain Of Phd Finger
Protein 8
Length = 371
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 77/186 (41%), Gaps = 19/186 (10%)
Query: 193 MKFKDYVAYMNVQHDEDPLYIFDYKFGENA-QGLLEDYRVPDLFQ--EDLFNVLDGDMRP 249
MK D+V Y E L + +F + L+E ++ E+L+ RP
Sbjct: 94 MKLGDFVKYYYSGKREKVLNVISLEFSDTRLSNLVETPKIVRKLSWVENLWPEECVFERP 153
Query: 250 SY-RWVIIGPQRSGASWHVDPALTSAWNTLLCGRKRWALYPPGRVPLGVTVHVNEDDGDV 308
+ ++ ++ + S +H+D TS W +L G K + L P L +
Sbjct: 154 NVQKYCLMSVRDSYTDFHIDFGGTSVWYHVLKGEKIFYLIRPTNANLTL----------- 202
Query: 309 NIETPSSLEWWLDFYPLLADD-DKPIECTQLPGETIVVPSGWWHCILNLETTIAVTQNFV 367
E SS + + D DK +C+ G+T+ +P+GW H +L +A NF+
Sbjct: 203 -FECWSSSSNQNEMF--FGDQVDKCYKCSVKQGQTLFIPTGWIHAVLTPVDCLAFGGNFL 259
Query: 368 DSKNFE 373
S N E
Sbjct: 260 HSLNIE 265
>pdb|4DO0|A Chain A, Crystal Structure Of Human Phf8 In Complex With Daminozide
Length = 374
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 77/186 (41%), Gaps = 19/186 (10%)
Query: 193 MKFKDYVAYMNVQHDEDPLYIFDYKFGENA-QGLLEDYRVPDLFQ--EDLFNVLDGDMRP 249
MK D+V Y E L + +F + L+E ++ E+L+ RP
Sbjct: 97 MKLGDFVKYYYSGKREKVLNVISLEFSDTRLSNLVETPKIVRKLSWVENLWPEECVFERP 156
Query: 250 SY-RWVIIGPQRSGASWHVDPALTSAWNTLLCGRKRWALYPPGRVPLGVTVHVNEDDGDV 308
+ ++ ++ + S +H+D TS W +L G K + L P L +
Sbjct: 157 NVQKYCLMSVRDSYTDFHIDFGGTSVWYHVLKGEKIFYLIRPTNANLTL----------- 205
Query: 309 NIETPSSLEWWLDFYPLLADD-DKPIECTQLPGETIVVPSGWWHCILNLETTIAVTQNFV 367
E SS + + D DK +C+ G+T+ +P+GW H +L +A NF+
Sbjct: 206 -FECWSSSSNQNEMF--FGDQVDKCYKCSVKQGQTLFIPTGWIHAVLTPVDCLAFGGNFL 262
Query: 368 DSKNFE 373
S N E
Sbjct: 263 HSLNIE 268
>pdb|3AL5|A Chain A, Crystal Structure Of Human Tyw5
pdb|3AL5|B Chain B, Crystal Structure Of Human Tyw5
pdb|3AL5|C Chain C, Crystal Structure Of Human Tyw5
pdb|3AL5|D Chain D, Crystal Structure Of Human Tyw5
pdb|3AL6|A Chain A, Crystal Structure Of Human Tyw5
pdb|3AL6|B Chain B, Crystal Structure Of Human Tyw5
pdb|3AL6|C Chain C, Crystal Structure Of Human Tyw5
pdb|3AL6|D Chain D, Crystal Structure Of Human Tyw5
Length = 338
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 59/254 (23%), Positives = 108/254 (42%), Gaps = 38/254 (14%)
Query: 132 VKRKKIVTREEFDREC--AEEPILLSGLADTWPARNTWTIDQLLTRYGDTAFRISQRSVR 189
V R + V+RE+F + +P++L G+ D P + WT+D L G +I +V
Sbjct: 31 VPRLEGVSREQFMQHLYPQRKPLVLEGI-DLGPCTSKWTVDYLSQVGGKKEVKIHVAAVA 89
Query: 190 SISMKFKDYVAYMNVQHDEDPLYIFDYKFGE---------NAQGLLEDYR--VPDLFQED 238
+ K++V Y + D+ + K E + L ED R V D+ ++
Sbjct: 90 QMDFISKNFV-YRTLPFDQLVQRAAEEKHKEFFVSEDEKYYLRSLGEDPRKDVADIRKQ- 147
Query: 239 LFNVLDGDMRPSYRWVIIGPQRSGASWHVDPALTSAW-------NTLL--CGRKRWALYP 289
F +L GD++ + Q + + + W N L+ G+KR L+
Sbjct: 148 -FPLLKGDIK--FPEFFKEEQFFSSVFRISSPGLQLWTHYDVMDNLLIQVTGKKRVVLFS 204
Query: 290 PGRVPLGVTVHVNEDDGDV-NIETPSSLEWWLDFYPLLADDDKPIECTQLPGETIVVPSG 348
P +++ +V NI+ P L YPL + + EC+ G+ + +P+
Sbjct: 205 PRDAQY---LYLKGTKSEVLNIDNPD-----LAKYPLFSKARR-YECSLEAGDVLFIPAL 255
Query: 349 WWHCILNLETTIAV 362
W+H +++ E + V
Sbjct: 256 WFHNVISEEFGVGV 269
>pdb|3PTR|B Chain B, Phf2 Jumonji Domain
pdb|3PU3|A Chain A, Phf2 Jumonji Domain-Nog Complex
pdb|3PU3|B Chain B, Phf2 Jumonji Domain-Nog Complex
pdb|3PU8|B Chain B, Phf2 Jumonji-Nog-Fe(Ii) Complex
pdb|3PU8|A Chain A, Phf2 Jumonji-Nog-Fe(Ii) Complex
pdb|3PUA|A Chain A, Phf2 Jumonji-Nog-Ni(Ii)
pdb|3PUS|A Chain A, Phf2 Jumonji-Nog-Ni(Ii)
pdb|3PUS|B Chain B, Phf2 Jumonji-Nog-Ni(Ii)
Length = 392
Score = 35.8 bits (81), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 28/124 (22%), Positives = 48/124 (38%), Gaps = 15/124 (12%)
Query: 252 RWVIIGPQRSGASWHVDPALTSAWNTLLCGRKRWALYPPGRVPLGVTVHVNEDDGDVNIE 311
++ +I + S +H+D SAW +L G K + L P + + +
Sbjct: 176 KYCLICVKDSYTDFHIDSGGASAWYHVLKGEKTFYLIRPASANISLYERWRSASNHSEM- 234
Query: 312 TPSSLEWWLDFYPLLADD-DKPIECTQLPGETIVVPSGWWHCILNLETTIAVTQNFVDSK 370
AD DK +C G+T+ +PSGW + L +A +F+ S
Sbjct: 235 -------------FFADQVDKCYKCIVKQGQTLFIPSGWIYATLTPVDCLAFAGHFLHSL 281
Query: 371 NFEF 374
+ E
Sbjct: 282 SVEM 285
>pdb|2YU1|A Chain A, Crystal Structure Of Hjhdm1a Complexed With
A-ketoglutarate
pdb|2YU2|A Chain A, Crystal Structure Of Hjhdm1a Without A-Ketoglutarate
Length = 451
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 45/112 (40%), Gaps = 17/112 (15%)
Query: 263 ASWHVDPALTSAWNTLLCGRKRWALYPPGRVPLGVTVH--VNEDDGDVNIETPSSLEWWL 320
+HVD TS W + G K + L PP L + + ++ GD+
Sbjct: 209 TDFHVDFGGTSVWYHIHQGGKVFWLIPPTAHNLELYENWLLSGSQGDI------------ 256
Query: 321 DFYPLLADDDKPIECTQLPGETIVVPSGWWHCILNLETTIAVTQNFVDSKNF 372
F D + IE Q G T V+PSGW H + T+ NF+ S N
Sbjct: 257 -FLGDRVSDCQRIELKQ--GYTFVIPSGWIHAVYTPTDTLVFGGNFLHSFNI 305
>pdb|3N9L|A Chain A, Cekdm7a From C.Elegans, Complex With H3k4me3 Peptide And
Nog
pdb|3N9M|A Chain A, Cekdm7a From C.Elegans, Alone
pdb|3N9M|C Chain C, Cekdm7a From C.Elegans, Alone
pdb|3N9N|A Chain A, Cekdm7a From C.Elegans, Complex With H3k4me3k9me2 Peptide
And Nog
pdb|3N9O|A Chain A, Cekdm7a From C.Elegans, Complex With H3k4me3 Peptide,
H3k9me2 Peptide And Nog
pdb|3N9P|A Chain A, Cekdm7a From C.Elegans, Complex With H3k4me3k27me2 Peptide
And Nog
pdb|3N9Q|A Chain A, Cekdm7a From C.Elegans, Complex With H3k4me3 Peptide,
H3k27me2 Peptide And Nog
pdb|3PUQ|A Chain A, Cekdm7a From C.Elegans, Complex With Alpha-Kg
pdb|3PUQ|C Chain C, Cekdm7a From C.Elegans, Complex With Alpha-Kg
pdb|3PUR|A Chain A, Cekdm7a From C.Elegans, Complex With D-2-Hg
pdb|3PUR|C Chain C, Cekdm7a From C.Elegans, Complex With D-2-Hg
Length = 528
Score = 33.9 bits (76), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 28/133 (21%), Positives = 51/133 (38%), Gaps = 14/133 (10%)
Query: 243 LDGDMRPSY-RWVIIGPQRSGASWHVDPALTSAWNTLLCGRKRWALYPPGRVPLGVTVHV 301
L D RP ++ + G S +HVD +S + +L G K + + P
Sbjct: 288 LPEDQRPKVEQFCLAGMAGSYTDFHVDFGGSSVYYHILKGEKIFYIAAPTEQNFAAY--- 344
Query: 302 NEDDGDVNIETPSSLEWWLDFYPLLADDDKPIECTQLPGETIVVPSGWWHCILNLETTIA 361
+ +P + W+ D + G+T+++P+GW H +L ++
Sbjct: 345 -----QAHETSPDTTTWFGDI-----ANGAVKRVVIKEGQTLLIPAGWIHAVLTPVDSLV 394
Query: 362 VTQNFVDSKNFEF 374
NF+ N E
Sbjct: 395 FGGNFLHLGNLEM 407
>pdb|2YPD|A Chain A, Crystal Structure Of The Jumonji Domain Of Human Jumonji
Domain Containing 1c Protein
pdb|2YPD|B Chain B, Crystal Structure Of The Jumonji Domain Of Human Jumonji
Domain Containing 1c Protein
Length = 392
Score = 32.7 bits (73), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 335 CT--QLPGETIVVPSGWWHCILNLETTIAVTQNFVDSKNF 372
CT Q G+ IV+P+G H + N + I VT++FV ++
Sbjct: 293 CTLIQFLGDAIVLPAGALHQVQNFHSCIQVTEDFVSPEHL 332
>pdb|1IZ3|A Chain A, Dimeric Structure Of Fih (Factor Inhibiting Hif)
Length = 349
Score = 30.4 bits (67), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 53/245 (21%), Positives = 93/245 (37%), Gaps = 35/245 (14%)
Query: 149 EEPILLSGLADTWPARNTWTIDQLLTRYGDTAFRI-SQRSVRSISMKFKDYVAYMNVQHD 207
EEP++L+ +PA W ++ L G+ F + S + + + K + N +
Sbjct: 59 EEPVVLTDTNLVYPALK-WDLEYLQENIGNGDFSVYSASTHKFLYYDEKKXANFQNFKPR 117
Query: 208 EDPLYIFDYKFGENAQGLLEDYRVPDLF-QEDLFNVLDGDMRP---SYRWVIIGPQRSGA 263
+ ++F E Q + + L+ Q+ L + + G + + W I Q+
Sbjct: 118 SNREEXKFHEFVEKLQDIQQRGGEERLYLQQTLNDTVGGKIVXDFLGFNWNWINKQQGKR 177
Query: 264 SW--------------HVDPALTSAWNTLLC---GRKRWALYPPGRV----PLGVTVHVN 302
W +V PA G KR L+PP + P V H
Sbjct: 178 GWGQLTSNLLLIGXEGNVTPAHYDEQQNFFAQIKGYKRCILFPPDQFECLYPYPVH-HPC 236
Query: 303 EDDGDVNIETPSSLEWWLDFYPLLADDDKPIECTQLPGETIVVPSGWWHCILN-LETTIA 361
+ V+ + P E + +F ++ E PG+ + +P WWH I + L I
Sbjct: 237 DRQSQVDFDNPD-YERFPNFQNVVG-----YETVVGPGDVLYIPXYWWHHIESLLNGGIT 290
Query: 362 VTQNF 366
+T NF
Sbjct: 291 ITVNF 295
>pdb|2ILM|A Chain A, Factor Inhibiting Hif-1 Alpha D201a Mutant In Complex With
Fe(ii), Alpha-ketoglutarate And Hif-1 Alpha 35mer
Length = 349
Score = 29.6 bits (65), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 52/245 (21%), Positives = 91/245 (37%), Gaps = 35/245 (14%)
Query: 149 EEPILLSGLADTWPARNTWTIDQLLTRYGDTAFRI-SQRSVRSISMKFKDYVAYMNVQHD 207
EEP++L+ +PA W ++ L G+ F + S + + + K + N +
Sbjct: 59 EEPVVLTDTNLVYPALK-WDLEYLQENIGNGDFSVYSASTHKFLYYDEKKMANFQNFKPR 117
Query: 208 EDPLYIFDYKFGENAQGLLEDYRVPDLFQEDLFNVLDGDMRP----SYRWVIIGPQRSGA 263
+ + ++F E Q + + L+ + N G + W I Q+
Sbjct: 118 SNREEMKFHEFVEKLQDIQQRGGEERLYLQQTLNDTVGRKIVMDFLGFNWNWINKQQGKR 177
Query: 264 SW--------------HVDPALTSAWNTLLC---GRKRWALYPPGRV----PLGVTVHVN 302
W +V PA + G KR L+PP + P V H
Sbjct: 178 GWGQLTSNLLLIGMEGNVTPAHYAEQQNFFAQIKGYKRCILFPPDQFECLYPYPVH-HPC 236
Query: 303 EDDGDVNIETPSSLEWWLDFYPLLADDDKPIECTQLPGETIVVPSGWWHCILN-LETTIA 361
+ V+ + P E + +F ++ E PG+ + +P WWH I + L I
Sbjct: 237 DRQSQVDFDNPD-YERFPNFQNVVG-----YETVVGPGDVLYIPMYWWHHIESLLNGGIT 290
Query: 362 VTQNF 366
+T NF
Sbjct: 291 ITVNF 295
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.441
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,213,256
Number of Sequences: 62578
Number of extensions: 1389404
Number of successful extensions: 2771
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 2731
Number of HSP's gapped (non-prelim): 40
length of query: 912
length of database: 14,973,337
effective HSP length: 108
effective length of query: 804
effective length of database: 8,214,913
effective search space: 6604790052
effective search space used: 6604790052
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)