Query 002526
Match_columns 912
No_of_seqs 341 out of 1469
Neff 5.1
Searched_HMMs 29240
Date Tue Mar 26 17:22:33 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002526.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1243-1247//hhsearch_pdb/002526hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3k2o_A Bifunctional arginine d 1.0 1 1 394.8 18.4 251 129-383 44-306 (336)
2 2yu1_A JMJC domain-containing 1.0 1 1 346.2 11.9 237 126-379 48-312 (451)
3 4gjz_A Lysine-specific demethy 1.0 1 1 345.7 16.3 223 131-366 2-234 (235)
4 3d8c_A Hypoxia-inducible facto 1.0 1 1 331.0 13.8 253 103-370 15-299 (349)
5 3al5_A HTYW5, JMJC domain-cont 1.0 1 1 327.5 16.4 223 128-370 27-277 (338)
6 3k3o_A PHF8, PHD finger protei 1.0 1 1 323.2 17.8 233 130-378 17-262 (371)
7 3kv4_A PHD finger protein 8; e 1.0 1 1 319.5 15.0 226 137-378 110-346 (447)
8 3kv5_D JMJC domain-containing 1.0 1 1 316.5 17.6 231 131-377 137-380 (488)
9 3pua_A GRC5, PHD finger protei 1.0 1 1 316.4 13.8 232 131-378 45-289 (392)
10 3kv9_A JMJC domain-containing 1.0 1 1 315.6 17.1 268 130-437 45-330 (397)
No 1
>3k2o_A Bifunctional arginine demethylase and lysyl-hydro JMJD6; structural genomics consortium, SGC, chromatin regulator, developmental protein; 1.75A {Homo sapiens} PDB: 3ld8_A 3ldb_A*
Probab=1.00 E-value=1 Score=394.84 Aligned_cols=251 Identities=40% Similarity=0.799 Sum_probs=217.0
Q ss_pred CCCCCCCC--CCCHHHHHHHH--CCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCEEEEEEEC-CCCEEEEEHHHHHHHHH
Q ss_conf 87710037--99988999995--148910003667784456776889998829924999855-88218841899999986
Q 002526 129 SQLVKRKK--IVTREEFDREC--AEEPILLSGLADTWPARNTWTIDQLLTRYGDTAFRISQR-SVRSISMKFKDYVAYMN 203 (912)
Q Consensus 129 ~~~IeRv~--~LS~eeF~~~y--~nkPVIItG~~~~WPA~~kWT~dyL~ek~GD~~V~V~~~-s~~~~~mtL~dFidyl~ 203 (912)
..+|+|++ .+|+++|.+.| +++||||+|++.+|||+++|+.+||.+++|+..|+|... .+..+.|+|++|++++.
T Consensus 44 ~~~I~Ri~~~~lS~eeF~~~y~~~~~PvVi~g~~~~WpA~~~Wt~~yL~~~~G~~~V~v~~~~~~~~~~m~~~~fl~~~~ 123 (336)
T 3k2o_A 44 ADNVERADALQLSVEEFVERYERPYKPVVLLNAQEGWSAQEKWTLERLKRKYRNQKFKCGEDNDGYSVKMKMKYYIEYME 123 (336)
T ss_dssp CCCCCEEEGGGCCHHHHHHHTTTTTCCEEEESTTTTCTHHHHCSHHHHHHHSTTCEEEEEECTTSCEEEEEHHHHHHHHH
T ss_pred CCCCCEECCCCCCHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCEEEECHHHHHHHHH
T ss_conf 99888754899999999998436698889848867884676625999999819924899863787434421999999997
Q ss_pred HCCCCCCEEEECCCCCC--CHHHHHHCCCCCCCCCCCHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf 06999976796165545--6256641058998663120001489998885437733799998432278988641899986
Q 002526 204 VQHDEDPLYIFDYKFGE--NAQGLLEDYRVPDLFQEDLFNVLDGDMRPSYRWVIIGPQRSGASWHVDPALTSAWNTLLCG 281 (912)
Q Consensus 204 ~~~de~pLYLfD~~l~e--~~P~L~~Dy~vP~~F~eDlf~~L~~~~RPd~rwL~IGp~gSgTplH~Dp~~TsawnaqI~G 281 (912)
...++.++||++++|.+ ..|+|.+||.+|.+|.+|+|+.+++..+|+++|+|||++|++|++|+|+++|++|++||.|
T Consensus 124 ~~~~~~~lYL~d~~~~e~~~~p~L~~dy~~P~~f~~d~~~~~~~~~~p~~~~~~~G~~gs~t~~H~D~~~~~~~~~~v~G 203 (336)
T 3k2o_A 124 STRDDSPLYIFDSSYGEHPKRRKLLEDYKVPKFFTDDLFQYAGEKRRPPYRWFVMGPPRSGTGIHIDPLGTSAWNALVQG 203 (336)
T ss_dssp HCCCSSCCCEEESCGGGSTTGGGGGGGCCCCGGGCCCGGGGGCTTTSCCCEEEEEECTTCEEEEECCGGGCEEEEEEEES
T ss_pred HCCCCCCCEEECCCCCCCCCCHHHHHHCCCCCCCCCCHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCEEEEEEEE
T ss_conf 04777871575154443212355797657884433105542653348772079977887667744488766414699741
Q ss_pred EEEEEEECCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHCCCCCCC-----CCCCEEEEECCCCEEEECCCCCEEEEEC
Q ss_conf 99999937999999612321599998657799602223210899879-----9988899994889898699981445847
Q 002526 282 RKRWALYPPGRVPLGVTVHVNEDDGDVNIETPSSLEWWLDFYPLLAD-----DDKPIECTQLPGETIVVPSGWWHCILNL 356 (912)
Q Consensus 282 rKRWiLfPP~~~p~gv~~~~~~~~s~vdv~sPdsl~W~l~~yP~l~~-----a~~p~EvvLePGDvLFIPsGWWHqV~NL 356 (912)
+|+|+||||++.+.++... ....+ ......++|+...||.++. ..++++|+|+|||+||||+||||+|.|+
T Consensus 204 ~K~~~L~pP~~~~~ly~~~-~~~~~---~~~~~~~~w~~~~~P~~~~~~~p~~~~~~~~~l~pGd~l~iP~gw~H~v~~~ 279 (336)
T 3k2o_A 204 HKRWCLFPTSTPRELIKVT-RDEGG---NQQDEAITWFNVIYPRTQLPTWPPEFKPLEILQKPGETVFVPGGWWHVVLNL 279 (336)
T ss_dssp CEEEEEECTTSCHHHHCCC-HHHHG---GGTTCHHHHHHHTGGGGGSTTSCGGGCCEEEEECTTCEEEECTTCEEEEEES
T ss_pred EEEEEEECCCCCHHCCCCC-CCCCC---CCCCCHHHHHHHHCCCHHHHCCCCCCCEEEEEECCCCEEEECCCCCEEEECC
T ss_conf 0799995898523105676-00158---7753114555433830121023345750799988998898589971777638
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHCCCC
Q ss_conf 882999402368989799998611586
Q 002526 357 ETTIAVTQNFVDSKNFEFVCLDFAPGY 383 (912)
Q Consensus 357 edSIAVt~NFvs~~NL~~vl~dl~~gf 383 (912)
++||+||+||++..|+..+|..++.|.
T Consensus 280 ~~sisv~~~f~~~~nl~~~~~~~~~~~ 306 (336)
T 3k2o_A 280 DTTIAITQNFASSTNFPVVWHKTVRGR 306 (336)
T ss_dssp SCEEEEEEEECCTTTHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHC
T ss_conf 986999754278201999999987408
No 2
>2yu1_A JMJC domain-containing histone demethylation PROT; JMJC-domain-containing histone demethylases, oxidoreductase; HET: AKG; 2.70A {Homo sapiens} PDB: 2yu2_A
Probab=1.00 E-value=1 Score=346.16 Aligned_cols=237 Identities=18% Similarity=0.298 Sum_probs=188.2
Q ss_pred CCCCCCCCCCC--CCCHHHHHHHH-CCCCCCCCCCCCCCCC---CCCCCHHHHHHHHC-CEEEEEEEC-CCCEEEEEHHH
Q ss_conf 56887710037--99988999995-1489100036677844---56776889998829-924999855-88218841899
Q 002526 126 SFDSQLVKRKK--IVTREEFDREC-AEEPILLSGLADTWPA---RNTWTIDQLLTRYG-DTAFRISQR-SVRSISMKFKD 197 (912)
Q Consensus 126 ~~~~~~IeRv~--~LS~eeF~~~y-~nkPVIItG~~~~WPA---~~kWT~dyL~ek~G-D~~V~V~~~-s~~~~~mtL~d 197 (912)
.+....|+|++ ++|+ +|.+++ +++||||+|+ .+||| .++||++||.+++| +..|+|.+. ....+.|+|++
T Consensus 48 ~~~~~~V~ri~~~~Ls~-EF~~~~~~nkPVVIt~~-~~Wpa~~P~~kWt~dyL~~~~G~d~~V~V~D~~~q~~~~M~l~e 125 (451)
T 2yu1_A 48 KYNANFVTFMEGKDFNV-EYIQRGGLRDPLIFKNS-DGLGIKMPDPDFTVNDVKMCVGSRRMVDVMDVNTQKGIEMTMAQ 125 (451)
T ss_dssp CCBCCCCEECCGGGCSH-HHHHHHCSCSCEEESSC-TTTTCBCCCTTCCHHHHHHHTCTTCCCCCEETTSSCCTTCCHHH
T ss_pred CCCCCCEEECCCCCCCH-HHHHHCCCCCCEEECCC-CCCCCCCCCCCCCHHHHHHHCCCCCEEEEEECCCCCCEEEEHHH
T ss_conf 77888467225344889-99985389975898157-67887277678999999997399716755774778544535999
Q ss_pred HHHHHHHCCCC-CCEEE-----ECCCCCC---CHHHHHHCCC-CCCCCCC-------CHHCCCCCCCCCCC-CEEEECCC
Q ss_conf 99998606999-97679-----6165545---6256641058-9986631-------20001489998885-43773379
Q 002526 198 YVAYMNVQHDE-DPLYI-----FDYKFGE---NAQGLLEDYR-VPDLFQE-------DLFNVLDGDMRPSY-RWVIIGPQ 259 (912)
Q Consensus 198 Fidyl~~~~de-~pLYL-----fD~~l~e---~~P~L~~Dy~-vP~~F~e-------Dlf~~L~~~~RPd~-rwL~IGp~ 259 (912)
|++|+++..++ .++|+ |+..+.+ ..|.+..++. +|.+|.+ |+|+.+++..+|++ +|+||||+
T Consensus 126 yidy~~~~~d~r~~LY~v~sLeF~~~~l~~~~~~P~l~~d~Dwv~~~~p~~l~~~~~d~f~~lge~~rP~~~r~~~mGp~ 205 (451)
T 2yu1_A 126 WTRYYETPEEEREKLYNVISLEFSHTRLENMVQRPSTVDFIDWVDNMWPRHLKESQTESTNAILEMQYPKVQKYCLMSVR 205 (451)
T ss_dssp HHHHHTSCTTTCCSCEEEEEECCTTSTTGGGCBCCHHHHHHCHHHHHSCGGGCC-----------CCSCCCCCEEEEECT
T ss_pred HHHHHHHCCCCCCCHHHHCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHEEEEECCC
T ss_conf 99998514134530000011013664001024673466543102102740332101245430254458861017998058
Q ss_pred CCCCCCCCCCCCCCCCEEEEEEEEEEEEECCCCCCCCCEEEE--CCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCEEEEE
Q ss_conf 999843227898864189998699999937999999612321--599998657799602223210899879998889999
Q 002526 260 RSGASWHVDPALTSAWNTLLCGRKRWALYPPGRVPLGVTVHV--NEDDGDVNIETPSSLEWWLDFYPLLADDDKPIECTQ 337 (912)
Q Consensus 260 gSgTplH~Dp~~TsawnaqI~GrKRWiLfPP~~~p~gv~~~~--~~~~s~vdv~sPdsl~W~l~~yP~l~~a~~p~EvvL 337 (912)
||+|++|+|+++|++|++||+|+|+|+||||++.+..++... +...+ + .| ||.+. .++++|++
T Consensus 206 gS~T~~H~D~~~ts~w~avi~GrK~w~L~PP~~~~~~~y~~~~~s~~q~-------~--~~----~p~~~--~~~~~v~l 270 (451)
T 2yu1_A 206 GCYTDFHVDFGGTSVWYHIHQGGKVFWLIPPTAHNLELYENWLLSGSQG-------D--IF----LGDRV--SDCQRIEL 270 (451)
T ss_dssp TCEEEEECCGGGCEEEEEEEESCEEEEEECCCHHHHHHHHHHHHTTCCS-------S--SC----HHHHS--SCCEEEEE
T ss_pred CCCCCEEECCCCCCHHHHEECCEEEEEEECCCCCCCCCCCCCCCCCCCH-------H--HH----HCCCC--CCCEEEEE
T ss_conf 8879968899984042310044389999699765533234444465401-------5--45----00013--55469998
Q ss_pred CCCCEEEECCCCCEEEEECCCCEEEEECCCCCCCHHHHHHHH
Q ss_conf 488989869998144584788299940236898979999861
Q 002526 338 LPGETIVVPSGWWHCILNLETTIAVTQNFVDSKNFEFVCLDF 379 (912)
Q Consensus 338 ePGDvLFIPsGWWHqV~NLedSIAVt~NFvs~~NL~~vl~dl 379 (912)
+|||+||||+||||+|.|+++|||||+||++..|+..++..+
T Consensus 271 ~pGE~LfIPsGWwH~V~nledsIait~NF~~~~nl~~~l~~~ 312 (451)
T 2yu1_A 271 KQGYTFVIPSGWIHAVYTPTDTLVFGGNFLHSFNIPMQLKIY 312 (451)
T ss_dssp CTTCEEEECTTCEEEEECSSCEEEEEEEECCSSSHHHHHHHH
T ss_pred CCCCEEEECCCCEEEEECCCCEEEEEEEECCCCCHHHHHHHH
T ss_conf 887279867996489961787289964408852589999999
No 3
>4gjz_A Lysine-specific demethylase 8; JMJC, beta barrel, Fe(II) and 2-oxoglutarate binding, oxidor; HET: AKG BME; 1.05A {Homo sapiens} PDB: 4gjy_A* 4aap_A* 3uyj_A*
Probab=1.00 E-value=1 Score=345.68 Aligned_cols=223 Identities=21% Similarity=0.390 Sum_probs=192.1
Q ss_pred CCCCCCCCCHHHHHHHH--CCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCEEEEEEEC------CCCEEEEEHHHHHHHH
Q ss_conf 71003799988999995--148910003667784456776889998829924999855------8821884189999998
Q 002526 131 LVKRKKIVTREEFDREC--AEEPILLSGLADTWPARNTWTIDQLLTRYGDTAFRISQR------SVRSISMKFKDYVAYM 202 (912)
Q Consensus 131 ~IeRv~~LS~eeF~~~y--~nkPVIItG~~~~WPA~~kWT~dyL~ek~GD~~V~V~~~------s~~~~~mtL~dFidyl 202 (912)
+|+|++.+|+++|.++| +++||||+|++.+|||+++|+.+||++++|+..|++... ......|+|++|++++
T Consensus 2 tipri~~pS~~eF~~~y~~~~~Pvvi~g~~~~wpa~~~w~~~yL~~~~g~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (235)
T 4gjz_A 2 TVPRLHRPSLQHFREQFLVPGRPVILKGVADHWPCMQKWSLEYIQEIAGCRTVPVEVGSRYTDEEWSQTLMTVNEFISKY 81 (235)
T ss_dssp BCCEEESCCHHHHHHHTTTTTCCEEEESSSTTSHHHHHCSHHHHHHHHTTSEEEEEEC-------CEEEEEEHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCHHHHHHHCCCCEEEEEECCCCCCCCCCEEECCHHHHHHHH
T ss_conf 88797999999999987427986899288768831122799999987399768787257655776535655699999998
Q ss_pred HHCCCCCCEEEECCCCCCCHHHHHHCCCCCCCCCCCHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCEEEEEEE
Q ss_conf 60699997679616554562566410589986631200014899988854377337999984322789886418999869
Q 002526 203 NVQHDEDPLYIFDYKFGENAQGLLEDYRVPDLFQEDLFNVLDGDMRPSYRWVIIGPQRSGASWHVDPALTSAWNTLLCGR 282 (912)
Q Consensus 203 ~~~~de~pLYLfD~~l~e~~P~L~~Dy~vP~~F~eDlf~~L~~~~RPd~rwL~IGp~gSgTplH~Dp~~TsawnaqI~Gr 282 (912)
........+|+++..+.+..|+|.+|+.+|.++..+.+ ...+...++|||++|++|++|+|++. +|++||.|+
T Consensus 82 ~~~~~~~~~y~~~~~~~~~~~~l~~d~~~p~~~~~~~~-----~~~~~~~~~wiG~~gs~t~~H~D~~~--n~~~qv~G~ 154 (235)
T 4gjz_A 82 IVNEPRDVGYLAQHQLFDQIPELKQDISIPDYCSLGDG-----EEEEITINAWFGPQGTISPLHQDPQQ--NFLVQVMGR 154 (235)
T ss_dssp TSSCCSSCEEEEEECHHHHCHHHHTTCCCCGGGGGSSS-----CGGGCEEEEEEECTTCEEEEECCSSE--EEEEEEESC
T ss_pred HHCCCCCCCEEEHHHHHHHHHHHHHHHCCCCCCCCCCC-----CCCCCCEEEEEECCCCCCEEEECCCC--CEEEEEEEE
T ss_conf 62677665311022354411888875437851124555-----55766437998479977436215665--669999526
Q ss_pred EEEEEECCCCCCCCCEEE--ECCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCEEEEECCCCEEEECCCCCEEEEECCCCE
Q ss_conf 999993799999961232--159999865779960222321089987999888999948898986999814458478829
Q 002526 283 KRWALYPPGRVPLGVTVH--VNEDDGDVNIETPSSLEWWLDFYPLLADDDKPIECTQLPGETIVVPSGWWHCILNLETTI 360 (912)
Q Consensus 283 KRWiLfPP~~~p~gv~~~--~~~~~s~vdv~sPdsl~W~l~~yP~l~~a~~p~EvvLePGDvLFIPsGWWHqV~NLedSI 360 (912)
|||+||||.+.+.+++.. .....+.+++..|+ +++||.++++ ++++|+|+|||+||||+||||+|+|+++||
T Consensus 155 K~w~L~pP~~~~~l~~~~~~~~~~~s~vd~~~~d-----~~~~p~~~~~-~~~~~~l~pGD~LyiP~gW~H~V~~l~~si 228 (235)
T 4gjz_A 155 KYIRLYSPQESGALYPHDTHLLHNTSQVDVENPD-----LEKFPKFAKA-PFLSCILSPGEILFIPVKYWHYVRALDLSF 228 (235)
T ss_dssp EEEEEECGGGGGGSCBCSSTTTTTBBSSCTTSCC-----TTTCGGGGGC-CCEEEEECTTCEEEECTTCEEEEEESSSEE
T ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC-----HHHCCCCCCC-CCEEEEECCCCEEEECCCCCEEEEECCCEE
T ss_conf 8368728532554366765555763122456744-----4448110279-757999999989995999928899899989
Q ss_pred EEEECC
Q ss_conf 994023
Q 002526 361 AVTQNF 366 (912)
Q Consensus 361 AVt~NF 366 (912)
|||+||
T Consensus 229 svn~w~ 234 (235)
T 4gjz_A 229 SVSFWW 234 (235)
T ss_dssp EEEEEE
T ss_pred EEEEEC
T ss_conf 998752
No 4
>3d8c_A Hypoxia-inducible factor 1 alpha inhibitor; FIH, HIF, DSBH, oxygenase, transcription, inhibitor oxoglutarate, asparaginyl hydroxylase; HET: AKG; 2.10A {Homo sapiens} PDB: 2ilm_A* 2w0x_A* 1h2l_A* 1h2m_A* 1h2n_A* 1yci_A* 2cgn_A 2cgo_A* 1h2k_A* 2wa3_A* 2wa4_A* 3od4_A* 3p3n_A* 3p3p_A* 2yc0_A* 2y0i_A* 2yde_A* 1mze_A* 1mzf_A* 2xum_A* ...
Probab=1.00 E-value=1 Score=330.99 Aligned_cols=253 Identities=21% Similarity=0.320 Sum_probs=193.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH-CCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCEEE
Q ss_conf 589885113345333334567775688771003799988999995-1489100036677844567768899988299249
Q 002526 103 FDGFYSPFLYRRYYRCHTVLDGFSFDSQLVKRKKIVTREEFDREC-AEEPILLSGLADTWPARNTWTIDQLLTRYGDTAF 181 (912)
Q Consensus 103 ~~~~~Sd~Lyr~~~~~~~~L~~~~~~~~~IeRv~~LS~eeF~~~y-~nkPVIItG~~~~WPA~~kWT~dyL~ek~GD~~V 181 (912)
...-.|+.+|.+|.+. ++..+.++..+|+|++.+|++ |.+.+ +++||||+|+..+||| ++|+.+||++++|+..|
T Consensus 15 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~I~Rv~~~s~~-~~~y~~~~~PVVi~g~~~~wpA-~kWt~eyL~~~~G~~~V 90 (349)
T 3d8c_A 15 EPREEAGALGPAWDES--QLRSYSFPTRPIPRLSQSDPR-AEELIENEEPVVLTDTNLVYPA-LKWDLEYLQENIGNGDF 90 (349)
T ss_dssp SCCBCTTTCCBSCCGG--GSCCCSSCEEECCEECTTCHH-HHHHHHTTCCEEESCCCTTGGG-GGCCHHHHHHHSCSSCE
T ss_pred CCCCCCCCCCCCCCHH--HHHHCCCCCCCCEEECCCCHH-HHHHHCCCCCEEEECCCCCCCC-CCCCHHHHHHHHCCCEE
T ss_conf 8634465555454888--897447888872076289864-9988628963899489877661-22999999986299849
Q ss_pred EEEECCC---------------------CEEEEEHHHHHHHHHHC---CCCCCEEEECCCCCCCHHHHHHCCCCCCCCCC
Q ss_conf 9985588---------------------21884189999998606---99997679616554562566410589986631
Q 002526 182 RISQRSV---------------------RSISMKFKDYVAYMNVQ---HDEDPLYIFDYKFGENAQGLLEDYRVPDLFQE 237 (912)
Q Consensus 182 ~V~~~s~---------------------~~~~mtL~dFidyl~~~---~de~pLYLfD~~l~e~~P~L~~Dy~vP~~F~e 237 (912)
+|..... ....|+|++|++++... .++.++||+++.+....|.|..||..+ ..
T Consensus 91 ~V~~~~~~~~~y~d~~~~~~~~~F~~~~~~~~m~~~efl~~~~~~~~~~~~~~~YL~~~~~~~~~~~l~~D~~~~---~~ 167 (349)
T 3d8c_A 91 SVYSASTHKFLYYDEKKMANFQNFKPRSNREEMKFHEFVEKLQDIQQRGGEERLYLQQTLNDTVGRKIVMDFLGF---NW 167 (349)
T ss_dssp EEEEESSSBCCCCCGGGTTSCTTCCCSEEEEEECHHHHHHHHHHHHHHTCCCEEEEEEECCTTSCHHHHHHHHTS---CH
T ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCHHHHHHHHCC---CH
T ss_conf 999778875112321133454333565405762799999999863016997773214266541241456665214---45
Q ss_pred CHHCCCCC--CCCCCC-CEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEECCCCCCCCCEE---EECCCCCCCCCC
Q ss_conf 20001489--998885-437733799998432278988641899986999999379999996123---215999986577
Q 002526 238 DLFNVLDG--DMRPSY-RWVIIGPQRSGASWHVDPALTSAWNTLLCGRKRWALYPPGRVPLGVTV---HVNEDDGDVNIE 311 (912)
Q Consensus 238 Dlf~~L~~--~~RPd~-rwL~IGp~gSgTplH~Dp~~TsawnaqI~GrKRWiLfPP~~~p~gv~~---~~~~~~s~vdv~ 311 (912)
+++..... ...+.+ .++|||++|++|++|+|++ ++|++||.|+|+|+||||.+.+.+++. +.....+.+++.
T Consensus 168 ~~~~~~~~~~~~~~~~~~~l~iG~~gs~t~~H~D~~--~n~~~qv~G~K~~~L~pP~~~~~ly~~~~~~~~~~~s~vd~~ 245 (349)
T 3d8c_A 168 NWINKQQGKRGWGQLTSNLLLIGMEGNVTPAHYGEQ--QNFFAQIKGYKRCILFPPDQFECLYPYPVHHPCDRQSQVDFD 245 (349)
T ss_dssp HHHHHHHHHTTCCCEEECEEEEECTTCEEEEECCSE--EEEEEEEESCEEEEEECGGGHHHHCBBCTTSTTBTBBCSCTT
T ss_pred HHHHHHHHCCCCCCCCCCEEEEECCCCCCCCEECCH--HCEEEEEECEEEEEEECCCHHHHHCCCCCCCCCCCCCCCCCC
T ss_conf 441123220245755331699979998866048872--307898742079999685232443036566877875304678
Q ss_pred CCCCHHHHHHCCCCCCCCCCCEEEEECCCCEEEECCCCCEEEEECC-CCEEEEECCCCCC
Q ss_conf 9960222321089987999888999948898986999814458478-8299940236898
Q 002526 312 TPSSLEWWLDFYPLLADDDKPIECTQLPGETIVVPSGWWHCILNLE-TTIAVTQNFVDSK 370 (912)
Q Consensus 312 sPdsl~W~l~~yP~l~~a~~p~EvvLePGDvLFIPsGWWHqV~NLe-dSIAVt~NFvs~~ 370 (912)
.|+ ++.||.++.+ ++++|+|+|||+||||+||||+|.|++ ++++|++||+...
T Consensus 246 ~~d-----~~~~p~~~~~-~~~~~~l~pGD~LyiP~gWwH~V~~l~d~~~sisvn~w~~~ 299 (349)
T 3d8c_A 246 NPD-----YERFPNFQNV-VGYETVVGPGDVLYIPMYWWHHIESLLNGGITITVNFWYKG 299 (349)
T ss_dssp SCC-----TTTCGGGGGC-CEEEEEECTTCEEEECTTCEEEEEECTTSCCEEEEEEEEEC
T ss_pred CCC-----HHHCCCCCCC-CCEEEEECCCCEEEECCCCCEEEEECCCCCCEEEEEEECCC
T ss_conf 853-----3338341368-71899999987899889980888986889848999988089
No 5
>3al5_A HTYW5, JMJC domain-containing protein C2ORF60; tRNA modification enzyme, unknown function; 2.50A {Homo sapiens} PDB: 3al6_A*
Probab=1.00 E-value=1 Score=327.48 Aligned_cols=223 Identities=22% Similarity=0.369 Sum_probs=187.1
Q ss_pred CCCCCCCCCCCCHHHHHHHH--CCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCEEEEEEECC----------CCEEEEEH
Q ss_conf 88771003799988999995--1489100036677844567768899988299249998558----------82188418
Q 002526 128 DSQLVKRKKIVTREEFDREC--AEEPILLSGLADTWPARNTWTIDQLLTRYGDTAFRISQRS----------VRSISMKF 195 (912)
Q Consensus 128 ~~~~IeRv~~LS~eeF~~~y--~nkPVIItG~~~~WPA~~kWT~dyL~ek~GD~~V~V~~~s----------~~~~~mtL 195 (912)
....|+|++.+|+++|.+.| +++||||+| +.+|||.++|+.+||++++|+..|+|.... .....|+|
T Consensus 27 ~~~~I~r~~~lS~~eF~~~y~~~~kPvVi~g-~~~wpa~~~Ws~dyL~~~~g~~~V~v~~~~~~~~~~~~~~~~~~~~~f 105 (338)
T 3al5_A 27 QHLPVPRLEGVSREQFMQHLYPQRKPLVLEG-IDLGPCTSKWTVDYLSQVGGKKEVKIHVAAVAQMDFISKNFVYRTLPF 105 (338)
T ss_dssp CCCBCCEEESCCHHHHHHHTGGGCCCEEEES-CCCCTHHHHCCHHHHHHHHCSCEEEEEC----CCCC-CCCCCEEEEEH
T ss_pred CCCCCCEECCCCHHHHHHHHHCCCCEEEEEC-CCCCCCCCCCCHHHHHHHHCCCEEEEEECCCCCCCCCCCCCEEEEEEH
T ss_conf 7898887789999999998644897199958-988820134899999986199269999767877663235631687589
Q ss_pred HHHHHHHHHCCC-------CCCEEEECCC---------CCCCHHHHHHCCCCCCCCCCCHHCCCCCCCCCCCCEEEECCC
Q ss_conf 999999860699-------9976796165---------545625664105899866312000148999888543773379
Q 002526 196 KDYVAYMNVQHD-------EDPLYIFDYK---------FGENAQGLLEDYRVPDLFQEDLFNVLDGDMRPSYRWVIIGPQ 259 (912)
Q Consensus 196 ~dFidyl~~~~d-------e~pLYLfD~~---------l~e~~P~L~~Dy~vP~~F~eDlf~~L~~~~RPd~rwL~IGp~ 259 (912)
++|++++....+ ..++|++++. +.+.+|+|.+||.+|.+|..|.+. ..++|||++
T Consensus 106 ~efl~~~~~~~~~~~l~~~~~~~Yl~~~~~~~~~~~~~l~~~~p~L~~d~~~P~~~~~d~~~---------~s~l~~g~~ 176 (338)
T 3al5_A 106 DQLVQRAAEEKHKEFFVSEDEKYYLRSLGEDPRKDVADIRKQFPLLKGDIKFPEFFKEEQFF---------SSVFRISSP 176 (338)
T ss_dssp HHHHHHHHC-CCSSCSSCTTCCCEEECCCSSTTTCCCCHHHHCHHHHTTCCCCCCSCGGGEE---------EEEEEEECT
T ss_pred HHHHHHHHHCCCCCCCCCCCCCCCHHHCCCCCCCCHHHHHHHCHHHHHHCCCCCCCCCCCCC---------CCEEEECCC
T ss_conf 99999987424665445777543010035442000131767787789765787412444554---------402687799
Q ss_pred CCCCCCCCCCCCCCCCEEEEEEEEEEEEECCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCEEEEECC
Q ss_conf 99984322789886418999869999993799999961232159999865779960222321089987999888999948
Q 002526 260 RSGASWHVDPALTSAWNTLLCGRKRWALYPPGRVPLGVTVHVNEDDGDVNIETPSSLEWWLDFYPLLADDDKPIECTQLP 339 (912)
Q Consensus 260 gSgTplH~Dp~~TsawnaqI~GrKRWiLfPP~~~p~gv~~~~~~~~s~vdv~sPdsl~W~l~~yP~l~~a~~p~EvvLeP 339 (912)
|+++++|+|++ ++|++||.|+|||+||||.+.+.+++. ....+.+++..|+ ++.||.++.+ ++++|+|+|
T Consensus 177 g~~~~~H~D~~--~n~~~qv~G~K~w~L~pP~~~~~ly~~--~~~~~~~d~~~~d-----~~~~p~~~~~-~~~~~~L~p 246 (338)
T 3al5_A 177 GLQLWTHYDVM--DNLLIQVTGKKRVVLFSPRDAQYLYLK--GTKSEVLNIDNPD-----LAKYPLFSKA-RRYECSLEA 246 (338)
T ss_dssp TCEEEEECCSS--EEEEEECSSCEEEEEECGGGGGGGTEE--TTEESCCCSSSCC-----TTTCTTGGGC-CEEEEEECT
T ss_pred CCCCCCEECCC--CCEEEEEEEEEEEEEECCCCCCCCCCC--CCCCCCCCCCCCC-----HHHCCCCCCC-CCEEEEECC
T ss_conf 88756658781--038999997789999796544443647--8876445688865-----3329131368-778999889
Q ss_pred CCEEEECCCCCEEEEECCCCEEEEECCCCCC
Q ss_conf 8989869998144584788299940236898
Q 002526 340 GETIVVPSGWWHCILNLETTIAVTQNFVDSK 370 (912)
Q Consensus 340 GDvLFIPsGWWHqV~NLedSIAVt~NFvs~~ 370 (912)
||+||||+||||+|.|+++|||||++|.+..
T Consensus 247 GD~LyiP~gWwH~v~~l~~sisvn~~~~~~~ 277 (338)
T 3al5_A 247 GDVLFIPALWFHNVISEEFGVGVNIFWKHLP 277 (338)
T ss_dssp TCEEEECTTCEEEEEESSCEEEEEEEECSSC
T ss_pred CCEEEECCCCEEEEEECCCEEEEEEEECCCC
T ss_conf 8889978998288766798799998705886
No 6
>3k3o_A PHF8, PHD finger protein 8; histone demethylase, chromatin modification, methylated H3K9, mental retardation, metal-BI phosphoprotein, zinc-finger; HET: AKG; 2.10A {Homo sapiens} PDB: 3k3n_A* 4do0_A* 2wwu_A*
Probab=1.00 E-value=1 Score=323.24 Aligned_cols=233 Identities=22% Similarity=0.367 Sum_probs=188.5
Q ss_pred CCCCCCC--CCCHHHHHHHHCCCCCCCCCCC---CCCCCCCCCCHHHHHHHHC-CEEEEEEECC-CCEEEEEHHHHHHHH
Q ss_conf 7710037--9998899999514891000366---7784456776889998829-9249998558-821884189999998
Q 002526 130 QLVKRKK--IVTREEFDRECAEEPILLSGLA---DTWPARNTWTIDQLLTRYG-DTAFRISQRS-VRSISMKFKDYVAYM 202 (912)
Q Consensus 130 ~~IeRv~--~LS~eeF~~~y~nkPVIItG~~---~~WPA~~kWT~dyL~ek~G-D~~V~V~~~s-~~~~~mtL~dFidyl 202 (912)
..|.+++ ++|.+.|.+...++||||++.. ..||+. +||.+++++.+| |..|+|.+.. ....+|+|++|++|+
T Consensus 17 ~~v~~i~~~d~t~~y~~~~~~~~Pvli~~~~glg~~~P~~-~~tv~~v~~~vG~d~~V~ViDv~~Q~~~~M~l~~y~dY~ 95 (371)
T 3k3o_A 17 EVILKPTGNQLTVEFLEENSFSVPILVLKKDGLGMTLPSP-SFTVRDVEHYVGSDKEIDVIDVTRQADCKMKLGDFVKYY 95 (371)
T ss_dssp TTSBCCCTTTCCHHHHHHHTTCSCEEESSCTTSCCBCCCT-TCCHHHHHHHHCC-CEEEEEETTTTEEEEEEHHHHHHHH
T ss_pred HHCCCCCHHHCCHHHHHHCCCCCCEEEECCCCCCCCCCCC-CCCHHHHHHHCCCCCEEEEEECCCCCCCCCCHHHHHHHH
T ss_conf 8213688565849999864899887981676567868988-799999998749984573144376777424499999997
Q ss_pred HHCCCCCCEEEECCCCCCCHHHHHHCCCCCCCCCC-CHHCCC-C---CCCCCCC-CEEEECCCCCCCCCCCCCCCCCCCE
Q ss_conf 60699997679616554562566410589986631-200014-8---9998885-4377337999984322789886418
Q 002526 203 NVQHDEDPLYIFDYKFGENAQGLLEDYRVPDLFQE-DLFNVL-D---GDMRPSY-RWVIIGPQRSGASWHVDPALTSAWN 276 (912)
Q Consensus 203 ~~~~de~pLYLfD~~l~e~~P~L~~Dy~vP~~F~e-Dlf~~L-~---~~~RPd~-rwL~IGp~gSgTplH~Dp~~Tsawn 276 (912)
++..++.++|+++..|.+. .|.++|.+|.+|.+ ||++.+ . ...+|++ +|+||||+||+|++|+|+++|++|+
T Consensus 96 ~~~~re~~lnv~d~efs~~--~L~~~~~~P~~~~d~d~~~~~wp~~~~~~rP~~~r~l~mGp~gS~T~~HiD~~gts~w~ 173 (371)
T 3k3o_A 96 YSGKREKVLNVISLEFSDT--RLSNLVETPKIVRKLSWVENLWPEECVFERPNVQKYCLMSVRDSYTDFHIDFGGTSVWY 173 (371)
T ss_dssp TCTTCCSCEEEEEEECTTS--GGGGTCBCCHHHHHHCHHHHHSCSSCSSCCCCCSCEEEEECTTEEEEEECCGGGCEEEE
T ss_pred HCCCCCCCEEEECHHCCCH--HHHCCCCCCCHHHHHHHHHHCCCHHHHCCCCCCEEEEEECCCCCCCCEEECCCCCCEEE
T ss_conf 2268887536513100650--32046458722412006664087012104997036999808998898678899984347
Q ss_pred EEEEEEEEEEEECCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCEEEEECCCCEEEECCCCCEEEEEC
Q ss_conf 99986999999379999996123215999986577996022232108998799988899994889898699981445847
Q 002526 277 TLLCGRKRWALYPPGRVPLGVTVHVNEDDGDVNIETPSSLEWWLDFYPLLADDDKPIECTQLPGETIVVPSGWWHCILNL 356 (912)
Q Consensus 277 aqI~GrKRWiLfPP~~~p~gv~~~~~~~~s~vdv~sPdsl~W~l~~yP~l~~a~~p~EvvLePGDvLFIPsGWWHqV~NL 356 (912)
++|+|+|+|+||||+..+..++..... ..+.+-.|+.. .. .++++|+|+|||+||||+||||+|.|+
T Consensus 174 ~vv~GrK~w~L~PPt~~nl~~y~~~~~-------s~~~~e~~~~~-----~~-~~~~ev~l~pGEtLfIPsGWwH~V~nl 240 (371)
T 3k3o_A 174 HVLKGEKIFYLIRPTNANLTLFECWSS-------SSNQNEMFFGD-----QV-DKCYKCSVKQGQTLFIPTGWIHAVLTP 240 (371)
T ss_dssp EEEEEEEEEEEECCCHHHHHHHHHHHT-------STTGGGSCGGG-----TS-SCCEEEEEETTCEEEECTTCEEEEEEE
T ss_pred EEEEEEEEEEEECCCCCCCCCCCCCCC-------CCCCCHHHCCC-----CC-CCEEEEEECCCCEEEECCCCEEEEECC
T ss_conf 886457999997977024454544556-------77600344066-----56-744999988885787079975987568
Q ss_pred CCCEEEEECCCCCCCHHHHHHH
Q ss_conf 8829994023689897999986
Q 002526 357 ETTIAVTQNFVDSKNFEFVCLD 378 (912)
Q Consensus 357 edSIAVt~NFvs~~NL~~vl~d 378 (912)
++||||++||++..|++.+++-
T Consensus 241 edSIai~~NFl~~~nl~~~l~~ 262 (371)
T 3k3o_A 241 VDCLAFGGNFLHSLNIEMQLKA 262 (371)
T ss_dssp EEEEEEEEEECCSTTHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHH
T ss_conf 8869988754663428999999
No 7
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=1.00 E-value=1 Score=319.50 Aligned_cols=226 Identities=23% Similarity=0.359 Sum_probs=181.0
Q ss_pred CCCHHHHHHHHCCCCCCCCCCC---CCCCCCCCCCHHHHHHHHC-CEEEEEEECC-CCEEEEEHHHHHHHHHHCCCCCCE
Q ss_conf 9998899999514891000366---7784456776889998829-9249998558-821884189999998606999976
Q 002526 137 IVTREEFDRECAEEPILLSGLA---DTWPARNTWTIDQLLTRYG-DTAFRISQRS-VRSISMKFKDYVAYMNVQHDEDPL 211 (912)
Q Consensus 137 ~LS~eeF~~~y~nkPVIItG~~---~~WPA~~kWT~dyL~ek~G-D~~V~V~~~s-~~~~~mtL~dFidyl~~~~de~pL 211 (912)
+++.+-|.+..-++|+||++.. ..||+. +||++++.+.+| |..|+|.+.. .+..+|+|++|++|++...++.++
T Consensus 110 ~~~~~~~~~~~~~~Pvli~~~~glgm~~P~~-~~tv~~v~~~~G~d~~V~ViDv~~Q~~~~M~l~~y~dy~~~~~r~~~l 188 (447)
T 3kv4_A 110 QLTVEFLEENSFSVPILVLKKDGLGMTLPSP-SFTVRDVEHYVGSDKEIDVIDVTRQADCKMKLGDFVKYYYSGKREKVL 188 (447)
T ss_dssp TCCHHHHHHTTSCSCEEESSCTTSCCBCCCT-TCCHHHHHHHHCTTCEEEEEETTTTEEEEEEHHHHHHHHHSSCCSSCE
T ss_pred HCHHHHHHHCCCCCCEEEECCCCCCCCCCCC-CCCHHHHHHHCCCCCEECCEECCCCCCCCCCHHHHHHHHHCCCCCCCE
T ss_conf 2539999864799777981576557758986-588999998749984674455476766205399999997136877754
Q ss_pred EEECCCCCCCHHHHHHCCCCCCCCCC-CHHCCC----CCCCCCC-CCEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEEE
Q ss_conf 79616554562566410589986631-200014----8999888-54377337999984322789886418999869999
Q 002526 212 YIFDYKFGENAQGLLEDYRVPDLFQE-DLFNVL----DGDMRPS-YRWVIIGPQRSGASWHVDPALTSAWNTLLCGRKRW 285 (912)
Q Consensus 212 YLfD~~l~e~~P~L~~Dy~vP~~F~e-Dlf~~L----~~~~RPd-~rwL~IGp~gSgTplH~Dp~~TsawnaqI~GrKRW 285 (912)
|+++..|.+. .|.++|.+|.+|.+ ||++.+ ....+|+ ++|+||||+||+|++|+|+++|++|+++|+|+|+|
T Consensus 189 nv~d~efs~~--~L~~~~~~P~~~~~~D~~~~lw~~~~~~~rP~v~r~~~mG~~gS~T~~HiD~~~ts~w~~vi~GrK~w 266 (447)
T 3kv4_A 189 NVISLEFSDT--RLSNLVETPKIVRKLSWVENLWPEECVFERPNVQKYCLMSVRDSYTDFHIDFGGTSVWYHVLKGEKIF 266 (447)
T ss_dssp EEEEEECTTS--GGGGGCBCCHHHHHHCHHHHHCCSCTTSCCCCCSCEEEEECTTEEEEEECCGGGCEEEEEEEESEEEE
T ss_pred EECCCCCCCC--HHHHCCCCCCEECCCCHHHHCCCCHHHCCCCCCEEEEEEECCCCCCCEEECCCCCCEEEEEEEEEEEE
T ss_conf 4214100552--24404678843120005653065012115987036999818998898668999983458986017999
Q ss_pred EEECCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCEEEEECCCCEEEECCCCCEEEEECCCCEEEEEC
Q ss_conf 99379999996123215999986577996022232108998799988899994889898699981445847882999402
Q 002526 286 ALYPPGRVPLGVTVHVNEDDGDVNIETPSSLEWWLDFYPLLADDDKPIECTQLPGETIVVPSGWWHCILNLETTIAVTQN 365 (912)
Q Consensus 286 iLfPP~~~p~gv~~~~~~~~s~vdv~sPdsl~W~l~~yP~l~~a~~p~EvvLePGDvLFIPsGWWHqV~NLedSIAVt~N 365 (912)
+||||+..+...+..... ..++. ++|+ .... .++++|+|+|||+||||+||||+|.|+++||||++|
T Consensus 267 ~L~PPt~~nl~~~~~~~~-------s~~~~-~~~~----~~~~-~~~~~v~l~pGetlfIPsGWwH~V~nledsIai~~N 333 (447)
T 3kv4_A 267 YLIRPTNANLTLFECWSS-------SSNQN-EMFF----GDQV-DKCYKCSVKQGQTLFIPTGWIHAVLTPVDCLAFGGN 333 (447)
T ss_dssp EEECCCHHHHHHHHHHHT-------CSSGG-GSCG----GGGS-SCCEEEEEETTCEEEECTTCEEEEEESSCEEEEEEE
T ss_pred EEECCCCCCCCCHHHCCC-------CCCHH-HHHC----CCCC-CCEEEEEECCCCEEECCCCCEEEEECCCCEEEECCC
T ss_conf 996987245442011135-------75302-3340----5545-643999988986786389976888637887998154
Q ss_pred CCCCCCHHHHHHH
Q ss_conf 3689897999986
Q 002526 366 FVDSKNFEFVCLD 378 (912)
Q Consensus 366 Fvs~~NL~~vl~d 378 (912)
|++..|++.+++-
T Consensus 334 F~~~~nl~~~l~~ 346 (447)
T 3kv4_A 334 FLHSLNIEMQLKA 346 (447)
T ss_dssp ECCSTTHHHHHHH
T ss_pred CCCCCCHHHHHHH
T ss_conf 3463479999999
No 8
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=1.00 E-value=1 Score=316.46 Aligned_cols=231 Identities=21% Similarity=0.354 Sum_probs=184.6
Q ss_pred CCCCCC--CCCHHHHHHHHCCCCCCCCCCC---CCCCCCCCCCHHHHHHHHC-CEEEEEEECC-CCEEEEEHHHHHHHHH
Q ss_conf 710037--9998899999514891000366---7784456776889998829-9249998558-8218841899999986
Q 002526 131 LVKRKK--IVTREEFDRECAEEPILLSGLA---DTWPARNTWTIDQLLTRYG-DTAFRISQRS-VRSISMKFKDYVAYMN 203 (912)
Q Consensus 131 ~IeRv~--~LS~eeF~~~y~nkPVIItG~~---~~WPA~~kWT~dyL~ek~G-D~~V~V~~~s-~~~~~mtL~dFidyl~ 203 (912)
.|.+++ +++.+.|.+..-++||||++.. ..||+ .+||++|+++.+| |..|+|.+.. ....+|+|++|++|++
T Consensus 137 ~v~~~~~~~~~~~~~~~~~~~~Pvli~~~~~lg~~~P~-~~~t~~~v~~~~G~d~~V~V~Dv~~Q~~~~m~l~~yi~y~~ 215 (488)
T 3kv5_D 137 IIIKMHGSQLTQRYLEKHGFDVPIMVPKLDDLGLRLPS-PTFSVMDVERYVGGDKVIDVIDVARQADSKMTLHNYVKYFM 215 (488)
T ss_dssp TCEECCGGGCCHHHHHHHCSCSCEEECSCTTTCCBCCC-TTCCHHHHHHHHCTTCEEEEEETTTTEEEEEEHHHHHHHHH
T ss_pred EEECCCCCCCHHHHHHHCCCCCCEEEECCCCCCCCCCC-CCCCHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHH
T ss_conf 25235311032999975378877798357776776898-87869999997289945643533766461655999999984
Q ss_pred HCCCCCCEEEECCCCCCCHHHHHHCCCCCCCCCC-CHHCCC-CC---CCCCC-CCEEEECCCCCCCCCCCCCCCCCCCEE
Q ss_conf 0699997679616554562566410589986631-200014-89---99888-543773379999843227898864189
Q 002526 204 VQHDEDPLYIFDYKFGENAQGLLEDYRVPDLFQE-DLFNVL-DG---DMRPS-YRWVIIGPQRSGASWHVDPALTSAWNT 277 (912)
Q Consensus 204 ~~~de~pLYLfD~~l~e~~P~L~~Dy~vP~~F~e-Dlf~~L-~~---~~RPd-~rwL~IGp~gSgTplH~Dp~~Tsawna 277 (912)
...++.++|+++..|.+. .|.++|.+|.+|.+ ||++.+ .. ..||. .+|+|||++||+|++|+|+++|++|++
T Consensus 216 ~~~r~~~~nv~slefs~~--~L~~~~~~P~~~~~~d~~~~~wp~~~~~~rP~~~r~~~mG~~gS~T~~H~D~~~t~~w~~ 293 (488)
T 3kv5_D 216 NPNRPKVLNVISLEFSDT--KMSELVEVPDIAKKLSWVENYWPDDSVFPKPFVQKYCLMGVQDSYTDFHIDFGGTSVWYH 293 (488)
T ss_dssp SSSCSSCEEEEEEECTTS--GGGGGCBCCHHHHHHCHHHHHCCTTCSSCCCCCSCEEEEECTTCEEEEECCGGGCEEEEE
T ss_pred CCCCCCCCCCCCCCCCCC--HHHCCCCCCHHHHHHCHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCEEECCCCCCEEEE
T ss_conf 238766301364200652--232057797035220334412763113467551038998289988986788999826554
Q ss_pred EEEEEEEEEEECCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCEEEEECCCCEEEECCCCCEEEEECC
Q ss_conf 99869999993799999961232159999865779960222321089987999888999948898986999814458478
Q 002526 278 LLCGRKRWALYPPGRVPLGVTVHVNEDDGDVNIETPSSLEWWLDFYPLLADDDKPIECTQLPGETIVVPSGWWHCILNLE 357 (912)
Q Consensus 278 qI~GrKRWiLfPP~~~p~gv~~~~~~~~s~vdv~sPdsl~W~l~~yP~l~~a~~p~EvvLePGDvLFIPsGWWHqV~NLe 357 (912)
||+|+|+|+||||++.+..++..... ..+. .+.|+.... .++++|+|+|||+||||+||||+|.|++
T Consensus 294 vv~G~K~w~L~PPt~~~~~~y~~~~~-------~~~~-----~~~~~~~~~-~~~~~~~l~pGe~lfIPsGWwH~V~nle 360 (488)
T 3kv5_D 294 VLWGEKIFYLIKPTDENLARYESWSS-------SVTQ-----SEVFFGDKV-DKCYKCVVKQGHTLFVPTGWIHAVLTSQ 360 (488)
T ss_dssp EEEEEEEEEEECCCHHHHHHHHHHHT-------CSSG-----GGSCGGGSS-SCCEEEEEETTCEEEECTTCEEEEEEEE
T ss_pred CCCEEEEEEEECCCCCCCCCCCCCCC-------CCCC-----CHHHHCCCC-CCEEEEEECCCCEEEECCCCEEEEECCC
T ss_conf 16705899996986246343554455-------7762-----133431135-5338986178877876799648862788
Q ss_pred CCEEEEECCCCCCCHHHHHH
Q ss_conf 82999402368989799998
Q 002526 358 TTIAVTQNFVDSKNFEFVCL 377 (912)
Q Consensus 358 dSIAVt~NFvs~~NL~~vl~ 377 (912)
+|||||+||++..|+..+++
T Consensus 361 dsIai~~NF~~~~nl~~~l~ 380 (488)
T 3kv5_D 361 DCMAFGGNFLHNLNIGMQLR 380 (488)
T ss_dssp EEEEEEEEECCSTTHHHHHH
T ss_pred CEEEECCCCCCCCCHHHHHH
T ss_conf 84897665377567999999
No 9
>3pua_A GRC5, PHD finger protein 2; alpha-ketoglutarate-Fe2+ dependent dioxygenases, histone TAI protein, protein binding; HET: OGA; 1.89A {Homo sapiens} PDB: 3pu3_A* 3ptr_B* 3pu8_B* 3pus_A*
Probab=1.00 E-value=1 Score=316.39 Aligned_cols=232 Identities=21% Similarity=0.348 Sum_probs=181.4
Q ss_pred CCCCCC--CCCHHHHHHHHCCCCCCCCCCC---CCCCCCCCCCHHHHHHHHC-CEEEEEEECC-CCEEEEEHHHHHHHHH
Q ss_conf 710037--9998899999514891000366---7784456776889998829-9249998558-8218841899999986
Q 002526 131 LVKRKK--IVTREEFDRECAEEPILLSGLA---DTWPARNTWTIDQLLTRYG-DTAFRISQRS-VRSISMKFKDYVAYMN 203 (912)
Q Consensus 131 ~IeRv~--~LS~eeF~~~y~nkPVIItG~~---~~WPA~~kWT~dyL~ek~G-D~~V~V~~~s-~~~~~mtL~dFidyl~ 203 (912)
-|.+++ +++.+-|.+..-++|+||++.. ..||+ .+||++++.+.+| |..|+|.+.. ....+|+|++|++|++
T Consensus 45 ~v~~~~g~~f~~~yl~~~g~~~Pvli~~~~glgm~~P~-~~~tv~~v~~~vG~d~~V~ViDv~~Q~~~~M~l~~yv~Y~~ 123 (392)
T 3pua_A 45 VVARVPGSQLTLGYMEEHGFTEPILVPKKDGLGLAVPA-PTFYVSDVENYVGPERSVDVTDVTKQKDCKMKLKEFVDYYY 123 (392)
T ss_dssp TSEECCGGGCCHHHHHHHTTCSCEEESSCTTTTCBCCC-TTCCHHHHHHHHCTTCEEEEEETTTTEEEEEEHHHHHHHHT
T ss_pred EEECCCHHHCHHHHHHHCCCCCCEEEECCCCCCCCCCC-CCCCHHHHHHHCCCCCEEEEEECCCCCCCCCCHHHHHHHHH
T ss_conf 47547743452999976589864898278645685898-87999999987399817831343767575323999999986
Q ss_pred HCCCCCCEEEECCCCCCCHHHHHHCCCCCCCCCC-CHHCC-CC---CCCCCC-CCEEEECCCCCCCCCCCCCCCCCCCEE
Q ss_conf 0699997679616554562566410589986631-20001-48---999888-543773379999843227898864189
Q 002526 204 VQHDEDPLYIFDYKFGENAQGLLEDYRVPDLFQE-DLFNV-LD---GDMRPS-YRWVIIGPQRSGASWHVDPALTSAWNT 277 (912)
Q Consensus 204 ~~~de~pLYLfD~~l~e~~P~L~~Dy~vP~~F~e-Dlf~~-L~---~~~RPd-~rwL~IGp~gSgTplH~Dp~~Tsawna 277 (912)
+..++.++|+++..|.+. .|.+.|..|.++.+ ||+.. .. -..||+ ++|++|||+||+|++|+|+++|++|++
T Consensus 124 ~~~re~~lnv~dlefs~t--~L~~~~~~P~lv~d~d~v~~~wp~~~~~~rP~v~r~~~mGp~gS~T~fHiD~~gTs~w~~ 201 (392)
T 3pua_A 124 STNRKRVLNVTNLEFSDT--RMSSFVEPPDIVKKLSWVENYWPDDALLAKPKVTKYCLICVKDSYTDFHIDSGGASAWYH 201 (392)
T ss_dssp CSSCCSCEEEEEEECTTS--GGGGGCBCCHHHHHHCHHHHHSCTTCSSCCCSCSCEEEEECTTCEEEEECCGGGCEEEEE
T ss_pred CCCCCCCEEEEECCCCCC--HHHCCCCCCHHHHHHHHHHHCCCHHHHHCCCCCEEEEEEECCCCCCCEEECCCCCCEEEE
T ss_conf 058875507630114642--111256683046553010110642355338974059999089888987589999714345
Q ss_pred EEEEEEEEEEECCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCEEEEECCCCEEEECCCCCEEEEECC
Q ss_conf 99869999993799999961232159999865779960222321089987999888999948898986999814458478
Q 002526 278 LLCGRKRWALYPPGRVPLGVTVHVNEDDGDVNIETPSSLEWWLDFYPLLADDDKPIECTQLPGETIVVPSGWWHCILNLE 357 (912)
Q Consensus 278 qI~GrKRWiLfPP~~~p~gv~~~~~~~~s~vdv~sPdsl~W~l~~yP~l~~a~~p~EvvLePGDvLFIPsGWWHqV~NLe 357 (912)
+++|+|+|+||||+..+...+..... ..++...|+-+. . .++++|+|+|||+||||+||||+|.|++
T Consensus 202 vi~GrK~w~L~PPt~~nl~~y~~~~~-------s~~~~e~~~~~~-----~-~~~~ev~l~pGEtlfIPsGWwH~V~nle 268 (392)
T 3pua_A 202 VLKGEKTFYLIRPASANISLYERWRS-------ASNHSEMFFADQ-----V-DKCYKCIVKQGQTLFIPSGWIYATLTPV 268 (392)
T ss_dssp EEEEEEEEEEECCCHHHHHHHHHHHH-------STTGGGSCGGGG-----S-SCCEEEEEETTCEEEECTTCEEEEEEEE
T ss_pred ECCCEEEEEEECCCCCCCCCHHHCCC-------CCCHHHHHHCCC-----C-CCEEEEEECCCCEEEECCCCEEEEECCC
T ss_conf 30526999997987323230111245-------753344452444-----6-6338999878867861799669985278
Q ss_pred CCEEEEECCCCCCCHHHHHHH
Q ss_conf 829994023689897999986
Q 002526 358 TTIAVTQNFVDSKNFEFVCLD 378 (912)
Q Consensus 358 dSIAVt~NFvs~~NL~~vl~d 378 (912)
+||||++||++..|++.+++-
T Consensus 269 dSIai~gNFl~~~nl~~~l~~ 289 (392)
T 3pua_A 269 DCLAFAGHFLHSLSVEMQMRA 289 (392)
T ss_dssp EEEEEEEEECCTTCHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
T ss_conf 889986731672509999999
No 10
>3kv9_A JMJC domain-containing histone demethylation protein 1D; jumonji domain lysine demethylase, metal-binding, zinc, zinc-finger; 2.29A {Homo sapiens} PDB: 3kva_A* 3kvb_A* 3u78_A*
Probab=1.00 E-value=1 Score=315.61 Aligned_cols=268 Identities=19% Similarity=0.325 Sum_probs=202.1
Q ss_pred CCCCCCC--CCCHHHHHHHHCCCCCCCCCCC---CCCCCCCCCCHHHHHHHHC-CEEEEEEECC-CCEEEEEHHHHHHHH
Q ss_conf 7710037--9998899999514891000366---7784456776889998829-9249998558-821884189999998
Q 002526 130 QLVKRKK--IVTREEFDRECAEEPILLSGLA---DTWPARNTWTIDQLLTRYG-DTAFRISQRS-VRSISMKFKDYVAYM 202 (912)
Q Consensus 130 ~~IeRv~--~LS~eeF~~~y~nkPVIItG~~---~~WPA~~kWT~dyL~ek~G-D~~V~V~~~s-~~~~~mtL~dFidyl 202 (912)
..|++++ +++.+-|.+..-++||||++.. ..||+ .+||++++.+.+| |..|+|.+.. ....+|+|++|++|+
T Consensus 45 ~~v~~i~g~d~t~~y~~~~~~~~Pvli~~~~glg~~~P~-~~~tv~~v~~~vG~d~~V~ViDv~~Q~~~~M~l~~yv~Y~ 123 (397)
T 3kv9_A 45 EIIIKMHGSQLTQRYLEKHGFDVPIMVPKLDDLGLRLPS-PTFSVMDVERYVGGDKVIDVIDVARQADSKMTLHNYVKYF 123 (397)
T ss_dssp GTCEECCTTTCCHHHHHHHCSCSCEEESSCTTSCCBCCC-TTCCHHHHHHHHTTTSEEEEEETTTTEEEEEEHHHHHHHH
T ss_pred HEEECCCHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCC-CCCCHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHH
T ss_conf 726138878845999975489876798167545675898-8888999999828884674111476657454299999997
Q ss_pred HHCCCCCCEEEECCCCCCCHHHHHHCCCCCCCCCC-CHHCCC-CC---CCCCC-CCEEEECCCCCCCCCCCCCCCCCCCE
Q ss_conf 60699997679616554562566410589986631-200014-89---99888-54377337999984322789886418
Q 002526 203 NVQHDEDPLYIFDYKFGENAQGLLEDYRVPDLFQE-DLFNVL-DG---DMRPS-YRWVIIGPQRSGASWHVDPALTSAWN 276 (912)
Q Consensus 203 ~~~~de~pLYLfD~~l~e~~P~L~~Dy~vP~~F~e-Dlf~~L-~~---~~RPd-~rwL~IGp~gSgTplH~Dp~~Tsawn 276 (912)
++..++.++|+++..|.+. .|.++|.+|.+|.+ ||++.+ +. ..||. ++|+||||+||+|++|+|+++|++|+
T Consensus 124 ~~~~r~~~lnvislefs~~--~L~~~~~~P~~v~d~Dwv~~~wp~~~~~~rP~v~r~l~mGp~gS~T~~HiD~~gts~w~ 201 (397)
T 3kv9_A 124 MNPNRPKVLNVISLEFSDT--KMSELVEVPDIAKKLSWVENYWPDDSVFPKPFVQKYCLMGVQDSYTDFHIDFGGTSVWY 201 (397)
T ss_dssp HCSSCSSCEEEEEEECTTS--GGGGGCBCCHHHHHHCHHHHHCCTTCSSCCCCCSCEEEEECTTCEEEEECCGGGCEEEE
T ss_pred HCCCCCCCCEECCHHHCCC--HHCCCCCCCCEEECCCHHHHCCCCHHCCCCCCCEEEEEECCCCCCCCEEECCCCCCEEE
T ss_conf 2048875020054622551--10357679713200116550287111257866125999818998898778899986024
Q ss_pred EEEEEEEEEEEECCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCEEEEECCCCEEEECCCCCEEEEEC
Q ss_conf 99986999999379999996123215999986577996022232108998799988899994889898699981445847
Q 002526 277 TLLCGRKRWALYPPGRVPLGVTVHVNEDDGDVNIETPSSLEWWLDFYPLLADDDKPIECTQLPGETIVVPSGWWHCILNL 356 (912)
Q Consensus 277 aqI~GrKRWiLfPP~~~p~gv~~~~~~~~s~vdv~sPdsl~W~l~~yP~l~~a~~p~EvvLePGDvLFIPsGWWHqV~NL 356 (912)
+||+|+|+|+||||+..+..++..... +. +.+-.| |+. .. .++++|+|+|||+||||+||||+|.|+
T Consensus 202 ~vv~GrK~w~L~PPt~~nl~ly~~~~~---s~----~~~e~~----~~~-~~-~~~~~v~l~pGe~lfIPsGW~H~V~nl 268 (397)
T 3kv9_A 202 HVLWGEKIFYLIKPTDENLARYESWSS---SV----TQSEVF----FGD-KV-DKCYKCVVKQGHTLFVPTGWIHAVLTS 268 (397)
T ss_dssp EEEEEEEEEEEECCCHHHHHHHHHHHT---SG----GGGGSC----GGG-GS-SCCEEEEEETTCEEEECTTCEEEEEEE
T ss_pred EECCCEEEEEEECCCCCCCCCCCCCCC---CC----CCCHHH----HCC-CC-CCEEEEEECCCCEEEECCCCEEECCCC
T ss_conf 514705999996976134110000255---77----720434----124-45-743999978988899679984770288
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHCCCCCCCCCHHHHHHCCCCHHHCCCCCCCCCCCCCCCCCHHHH-----HHHHHHHHC
Q ss_conf 882999402368989799998611586543100001110010000013576677888999402458-----887774501
Q 002526 357 ETTIAVTQNFVDSKNFEFVCLDFAPGYRHKGVCRAGLLALEEESLEGGGKNTSAGDHDMSYPDLTR-----KEKRVRVNR 431 (912)
Q Consensus 357 edSIAVt~NFvs~~NL~~vl~dl~~gf~~~~v~rag~l~~~~~~~e~~~~~~~~~~~~~~~~d~~~-----~~~r~~~~~ 431 (912)
++||||++||++..|++.+++-. ..|. +..+..+..|+.|.. +++++..++
T Consensus 269 edSIai~~NFl~~~nl~~~l~~~--------------------~~E~----~~k~~~~~~fp~F~~~~w~~a~~~l~~~~ 324 (397)
T 3kv9_A 269 QDCMAFGGNFLHNLNIGMQLRCY--------------------EMEK----RLKTPDLFKFPFFEAICWFVAKNLLETLK 324 (397)
T ss_dssp EEEEEEEEEECCSTTHHHHHHHH--------------------HHHH----HHTCGGGGGSTTHHHHHHHHHHHHHHHHH
T ss_pred CCEEEECCCCCCCHHHHHHHHHH--------------------HHHH----HCCCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 68589787135701089999999--------------------8997----61888557670689999999999999999
Q ss_pred CCCCCC
Q ss_conf 476776
Q 002526 432 CGEIQN 437 (912)
Q Consensus 432 ~~~~~~ 437 (912)
+.+..+
T Consensus 325 ~~~~~~ 330 (397)
T 3kv9_A 325 ELREDG 330 (397)
T ss_dssp HHHTTT
T ss_pred HHHHCC
T ss_conf 888658
Done!