Query 002527
Match_columns 912
No_of_seqs 253 out of 753
Neff 5.4
Searched_HMMs 29240
Date Tue Mar 26 15:45:12 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002527.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1248-1252//hhsearch_pdb/002527hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ybx_A Phosphatidylinositol-5- 1.0 1 1 574.0 23.3 251 620-881 74-394 (394)
2 2gk9_A Phosphatidylinositol-4- 1.0 1 1 566.3 17.2 250 620-882 66-392 (392)
3 2aqx_A Predicted: inositol 1,4 1.0 1 1 39.6 4.6 86 647-755 7-92 (289)
4 1w2f_A Inositol-trisphosphate 1.0 1 1 33.1 7.8 74 660-755 6-79 (276)
5 2iew_A Inositol polyphosphate 1.0 1 1 31.3 5.9 92 661-755 15-133 (363)
6 2a98_A Inositol 1,4,5-trisphos 1.0 1 1 30.0 6.0 62 673-755 1-62 (259)
7 4frf_A Inositol polyphosphate 1.0 1 1 28.2 -0.4 79 659-755 4-89 (275)
8 2con_A RUH-035 protein, NIN on 1.0 1 1 19.6 -0.5 31 12-42 30-60 (79)
9 3ts3_A Capsid polyprotein; vir 1.0 1 1 19.5 1.9 51 623-679 115-168 (208)
10 2y35_A LD22664P; hydrolase-DNA 1.0 1 1 17.4 -5.8 70 8-85 126-206 (1140)
No 1
>2ybx_A Phosphatidylinositol-5-phosphate 4-kinase type-2; transferase, signalling; HET: PHD; 2.56A {Homo sapiens} PDB: 1bo1_A
Probab=1.00 E-value=1 Score=574.04 Aligned_cols=251 Identities=26% Similarity=0.460 Sum_probs=229.3
Q ss_pred CCCEEEEEECHHHHHHHHHHCCCCHHHHHHHHCCCCCC-CCCCCCCCCEEEEECCCCEEEEECCHHHHHHHHHHHHHHHH
Q ss_conf 86659999069999999987199968899974137778-89998754107864289389973788999999999999999
Q 002527 620 KGKYSVKCLYANQFRDLRSRCCPSELAYIDSLSRCRNW-DAKGGKSKSFFVKTLDDRFIIKEIKKTEFDSFDKFALHYFK 698 (912)
Q Consensus 620 ~~~f~~~~y~p~~F~~LR~~~gi~e~dy~~SL~~~~~~-~~sgGKSGs~F~~T~D~rFIIKtisk~E~~~l~k~lp~Yf~ 698 (912)
+.+|+|++|||.+|++||++||+++++|+.||++|..| .+++|||||+||+|.|+|||||||++.|+++|+++||.||+
T Consensus 74 p~~f~~k~Y~P~~F~~LR~~~~i~~~dy~~Sl~~~~~~~~~s~GKSGs~F~~T~D~rfiIKti~~~E~~~l~~~lp~Y~~ 153 (394)
T 2ybx_A 74 PSHFKFKEYCPMVFRNLRERFGIDDQDFQNSLTRSAPLPNDSQARSGARFHTSYDKRYIIKTITSEDVAEMHNILKKYHQ 153 (394)
T ss_dssp CSEEEEEEESHHHHHHHHHHTTCCHHHHHHHHHSSCCEECC-----CCCEEECTTSSEEEEEECHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEECHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCEEEEEECHHHHHHHHHHHHHHHH
T ss_conf 88749999788999999998297999999985478764247899866879981797289996199999999999999999
Q ss_pred HHHHHCCCCCCCCHHEEEEEEEEEEECCCCCCEEEEEEEEEEECCCCC-CEEEEEECCCCCCCCCCCCCCC--CCCEEEC
Q ss_conf 985203899984112123478995432699932579999982137896-3115650377533445567799--9850104
Q 002527 699 YMNESFDSGNQTCLAKVLGIYQVTIRQPKSGKEMRHDLMVMENLTFER-NITRQYDLKGALHARYNTTVDG--SGDVLLD 775 (912)
Q Consensus 699 yi~~~~~~~~~TlL~Ki~Gly~i~~k~~~~g~~~k~~~iVMeNlf~~~-~i~~~YDLKGS~~~R~~~~~~~--~~~vllD 775 (912)
||.++ +++|||+||||+|+|++. |+ +.|||||+|+|+++ .|+++||||||+++|.+.+.+. ...||||
T Consensus 154 ~~~~~---~~~TLL~k~~Gly~v~~~----~~--~~~fvVM~Nlf~~~~~i~~~yDLKGS~~~R~~~~~~~~~~~~~LkD 224 (394)
T 2ybx_A 154 YIVEC---HGITLLPQFLGMYRLNVD----GV--EIYVIVTRNVFSHRLSVYRKYDLKGSTVAREASDKEKAKELPTLKD 224 (394)
T ss_dssp HHHHT---TTCCSSCCEEEEEEEEET----TE--EEEEEEEECSSCSSSCCSEEEEECCSSSCCCCCHHHHTSSSCEECH
T ss_pred HHHHC---CCCCCHHHHCEEEEEEEC----CE--EEEEEEEECCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCEECC
T ss_conf 99840---898676653178999989----90--7999999367788764201002056445776675344567654111
Q ss_pred CCHHCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECC------------------------------
Q ss_conf 00010049988243735699999999966997820898200005688548------------------------------
Q 002527 776 QNFVNDMNSSPLYVSNTAKRILQRAVWNDTTFLNSIDVMDYSLLVGVDSQ------------------------------ 825 (912)
Q Consensus 776 ~nf~~~~~~~~i~l~~~~k~~L~~qL~~Dt~FL~s~nIMDYSLLVGi~~~------------------------------ 825 (912)
+||++.. .+|+|+++.|+.|++||++||.||+++||||||||||||..
T Consensus 225 ~df~~~~--~~i~l~~~~k~~l~~qL~~D~~FL~~~~iMDYSLLvGIh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ 302 (394)
T 2ybx_A 225 NDFINEG--QKIYIDDNNKKVFLEKLKKDVEFLAQLKLMDYSLLVGIHDVERAEQEEVECEENDGEEEGESDGTHPVGTP 302 (394)
T ss_dssp HHHHHTT--CCCCCCHHHHHHHHHHHHHHHHHHHHTTEESCEEEEEEEEHHHHHHHHHCC--------------------
T ss_pred CCHHHCC--CEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 1367469--81997899999999999999999987787664048777315543200002445555433445655445787
Q ss_pred ------------------------------------CCEEEEEEEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCHHHH
Q ss_conf ------------------------------------94159837876630350458999998733999998853593679
Q 002527 826 ------------------------------------RRELVCGIIDYLRQYTWDKHLETWVKSSLVPKNVLPTVISPKDY 869 (912)
Q Consensus 826 ------------------------------------~~~l~iGIID~L~~Yt~~KklE~~~K~~~~~~~~~~Tvi~P~~Y 869 (912)
+.+||+|||||||+|||+||+|||+|++.++.+..||||+|++|
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~~~~iyyiGIIDiLq~Y~~~KklE~~~Ks~~~~~~~~iS~V~P~~Y 382 (394)
T 2ybx_A 303 PDSPGNTLNSSPPLAPGEFDPNIDVYGIKCHENSPRKEVYFMAIIXILTHYDAKKKAAHAAKTVKHGAGAEISTVNPEQY 382 (394)
T ss_dssp ------------CCCTTCCCTTTSTTEEECCTTCSSCEEEEEEEECCCEESCC-------------------CCCCHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCHHHHHHHHHHHHCCCCCCCCCEECHHHH
T ss_conf 55534444322223655456444323434555777743799999986310784089999999861589999856998999
Q ss_pred HHHHHHHHHCCC
Q ss_conf 999999984114
Q 002527 870 KRRFRKFMSTHF 881 (912)
Q Consensus 870 ~~RF~~~m~~~F 881 (912)
++||++||.++|
T Consensus 383 ~~RF~~fm~~if 394 (394)
T 2ybx_A 383 SKRFLDFIGHIL 394 (394)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHC
T ss_conf 999999999869
No 2
>2gk9_A Phosphatidylinositol-4-phosphate 5-kinase, type II, gamma; phosphoinositide, structural genomics, structural genomics consortium, SGC, transferase; 2.80A {Homo sapiens}
Probab=1.00 E-value=1 Score=566.33 Aligned_cols=250 Identities=27% Similarity=0.470 Sum_probs=228.2
Q ss_pred CCCEEEEEECHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCEEEEECCHHHHHHHHHHHHHHHHH
Q ss_conf 86659999069999999987199968899974137778899987541078642893899737889999999999999999
Q 002527 620 KGKYSVKCLYANQFRDLRSRCCPSELAYIDSLSRCRNWDAKGGKSKSFFVKTLDDRFIIKEIKKTEFDSFDKFALHYFKY 699 (912)
Q Consensus 620 ~~~f~~~~y~p~~F~~LR~~~gi~e~dy~~SL~~~~~~~~sgGKSGs~F~~T~D~rFIIKtisk~E~~~l~k~lp~Yf~y 699 (912)
+.+|+|++|+|.+|++||++||+++++|+.||++|..|. ++|||| +||+|.|+|||||||++.|+++|+++||.||+|
T Consensus 66 p~~f~~k~Y~P~~F~~LR~~~~i~~~dy~~Sl~~~~~~~-s~GKSG-~F~~T~D~rfiIKti~~~E~~~l~~~lp~Y~~~ 143 (392)
T 2gk9_A 66 PSHFKFKEYCPQVFRNLRDRFGIDDQDYLVSLTRNPPSE-SEGSDG-RFLISYDRTLVIKEVSSEDIADMHSNLSNYHQY 143 (392)
T ss_dssp CSSBEEEEESHHHHHHHHHTTTCCHHHHHHHHHSSCCCC-CC------CCCCTTSSEEEEECCHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEECHHHHHHHHHHHCCCHHHHHHHHCCCCCCC-CCCCCC-EEEECCCCCEEEEEECHHHHHHHHHHHHHHHHH
T ss_conf 886499997979999999980989899998743787455-798762-379869986899960999999999999999999
Q ss_pred HHHHCCCCCCCCHHEEEEEEEEEEECCCCCCEEEEEEEEEEECCCCC-CEEEEEECCCCCCCCCCCCCCCC--CCEEECC
Q ss_conf 85203899984112123478995432699932579999982137896-31156503775334455677999--8501040
Q 002527 700 MNESFDSGNQTCLAKVLGIYQVTIRQPKSGKEMRHDLMVMENLTFER-NITRQYDLKGALHARYNTTVDGS--GDVLLDQ 776 (912)
Q Consensus 700 i~~~~~~~~~TlL~Ki~Gly~i~~k~~~~g~~~k~~~iVMeNlf~~~-~i~~~YDLKGS~~~R~~~~~~~~--~~vllD~ 776 (912)
+.++ +++|||+||||+|+|++. |+ ++|||||+|+|+++ .|+++||||||+++|.+.+.+.. ..||||+
T Consensus 144 ~~~~---~~~TLL~k~~Gly~v~~~----~~--~~~~vVM~Nlf~~~~~i~~~yDLKGS~~~R~~~~~~~~~~~~~LkD~ 214 (392)
T 2gk9_A 144 IVKC---HGNTLLPQFLGMYRVSVD----NE--DSYMLVMRNMFSHRLPVHRKYDLKGSLVSREASDKEKVKELPTLRDM 214 (392)
T ss_dssp HHHT---TSCSSSCCEEEEEECCBS----SC--CCEEEEEECSSCSSSCCSCCCEECC-----------------CCBTT
T ss_pred HHHH---CCCCCHHHHCEEEEEEEC----CE--EEEEEEEECCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCEECCC
T ss_conf 9840---798655653068999989----90--79999993677887641034450565457766752235666611131
Q ss_pred CHHCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCC------------------------------
Q ss_conf 00100499882437356999999999669978208982000056885489------------------------------
Q 002527 777 NFVNDMNSSPLYVSNTAKRILQRAVWNDTTFLNSIDVMDYSLLVGVDSQR------------------------------ 826 (912)
Q Consensus 777 nf~~~~~~~~i~l~~~~k~~L~~qL~~Dt~FL~s~nIMDYSLLVGi~~~~------------------------------ 826 (912)
||++.. .+|+|+++.++.|++||++||.||+++||||||||||||...
T Consensus 215 df~~~~--~~i~l~~~~k~~l~~~l~~D~~FL~~~~iMDYSLLvGi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (392)
T 2gk9_A 215 DFLNKN--QKVYIGEEEKKIFLEKLKRDVEFLVQLKIMDYSLLLGIHDIIRGSEPEEEAPVREDESEVDGDCSLTGPPAL 292 (392)
T ss_dssp C--CCC--CCCCC----CHHHHHHHHHHHHHHHHTTCCCCCEECCCBCC-------------------------------
T ss_pred CHHHCC--CEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 156259--869878999999999999999999876876630587663155432112222344555545553323456432
Q ss_pred --------------------------------------------CEEEEEEEEEEECCCHHHHHHHHHHHHCCCCCCCCC
Q ss_conf --------------------------------------------415983787663035045899999873399999885
Q 002527 827 --------------------------------------------RELVCGIIDYLRQYTWDKHLETWVKSSLVPKNVLPT 862 (912)
Q Consensus 827 --------------------------------------------~~l~iGIID~L~~Yt~~KklE~~~K~~~~~~~~~~T 862 (912)
.+||+|||||||+|||+||+|||+|++.++.+..||
T Consensus 293 ~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~~~~iyylGIIDiLq~Y~~~KklE~~~Ks~~~~~~~~iS 372 (392)
T 2gk9_A 293 VGSYGTSPEGIGGYIHSHRPLGPGEFESFIDVYAIRSAEGAPQKEVYFMGLIDILTQYDAKKKAAHAAKTVKHGAGAEIS 372 (392)
T ss_dssp --------------------------------------------CBCCCEECCCC-------------------------
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEECCHHHHHHHHHHHHCCCCCCCCC
T ss_conf 24567885453333432222366656544432343455567775279999977400087008999999986157899974
Q ss_pred CCCHHHHHHHHHHHHHCCCC
Q ss_conf 35936799999999841144
Q 002527 863 VISPKDYKRRFRKFMSTHFL 882 (912)
Q Consensus 863 vi~P~~Y~~RF~~~m~~~F~ 882 (912)
||+|++|++||++||.++|.
T Consensus 373 ~v~P~~Y~~RF~~fm~~~~~ 392 (392)
T 2gk9_A 373 TVHPEQYAKRFLDFITNIFA 392 (392)
T ss_dssp --CHHHHHHHHHHHTC----
T ss_pred EECHHHHHHHHHHHHHHHHC
T ss_conf 68989999999999999609
No 3
>2aqx_A Predicted: inositol 1,4,5-trisphosphate 3-kinase; IP3K, ITPKB, IP3-3K, IP3-3KB, IP3, calmodu binding, transferase; HET: ATP; 2.50A {Mus musculus}
Probab=1.00 E-value=1 Score=39.62 Aligned_cols=86 Identities=17% Similarity=0.206 Sum_probs=59.9
Q ss_pred HHHHHCCCCCCCCCCCCCCCEEEEECCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHEEEEEEEEEEECC
Q ss_conf 99974137778899987541078642893899737889999999999999999852038999841121234789954326
Q 002527 647 YIDSLSRCRNWDAKGGKSKSFFVKTLDDRFIIKEIKKTEFDSFDKFALHYFKYMNESFDSGNQTCLAKVLGIYQVTIRQP 726 (912)
Q Consensus 647 y~~SL~~~~~~~~sgGKSGs~F~~T~D~rFIIKtisk~E~~~l~k~lp~Yf~yi~~~~~~~~~TlL~Ki~Gly~i~~k~~ 726 (912)
|+.|+.+-..|.--+|-.|.+.. .++..|+|-.+..|.++...+.+. .-..++++++|...+
T Consensus 7 ~~~~~~~~~~~~QvaGH~g~~~~--~~~G~i~Kp~~~~E~~fYe~l~~~-----------~L~~fvP~y~G~~~~----- 68 (289)
T 2aqx_A 7 FVMSFKKKYPWIQLAGHAGSFKA--AANGRILKKHCESEQRCLDRLMAD-----------VLRPFVPAYHGDVVK----- 68 (289)
T ss_dssp SEEEEEEEEECCCCSSCTTSEEE--CSTTEEEEECCHHHHHHHHHHTTS-----------TTGGGSCCEEEEEEE-----
T ss_pred CCCCCCCCCCCEEEECCCCCCEE--CCCCEEEEECCHHHHHHHHHHHHH-----------HHHHHCCHHEEEECC-----
T ss_conf 21055668876776079874058--899879756967999999987262-----------667747133276524-----
Q ss_pred CCCCEEEEEEEEEEECCCCCCEEEEEECC
Q ss_conf 99932579999982137896311565037
Q 002527 727 KSGKEMRHDLMVMENLTFERNITRQYDLK 755 (912)
Q Consensus 727 ~~g~~~k~~~iVMeNlf~~~~i~~~YDLK 755 (912)
.|. .+|+||||.++..-.-+-|||
T Consensus 69 -~~~----~~i~LEDLt~gf~~PcVmDiK 92 (289)
T 2aqx_A 69 -DGE----RYNQMDDLLADFDSPCVMDCK 92 (289)
T ss_dssp -TTE----EEEEEECTTTTCSSCEEEEEE
T ss_pred -CCC----EEEEEHHHHCCCCCCEEEEEE
T ss_conf -894----489852665289972698986
No 4
>1w2f_A Inositol-trisphosphate 3-kinase A; inositol phosphate kinase, transferase, calmodulin-binding; 1.8A {Homo sapiens} SCOP: d.143.1.3 PDB: 1tzd_A* 1w2d_A* 1w2c_A*
Probab=1.00 E-value=1 Score=33.10 Aligned_cols=74 Identities=16% Similarity=0.220 Sum_probs=52.1
Q ss_pred CCCCCCCEEEEECCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHEEEEEEEEEEECCCCCCEEEEEEEEE
Q ss_conf 99875410786428938997378899999999999999998520389998411212347899543269993257999998
Q 002527 660 KGGKSKSFFVKTLDDRFIIKEIKKTEFDSFDKFALHYFKYMNESFDSGNQTCLAKVLGIYQVTIRQPKSGKEMRHDLMVM 739 (912)
Q Consensus 660 sgGKSGs~F~~T~D~rFIIKtisk~E~~~l~k~lp~Yf~yi~~~~~~~~~TlL~Ki~Gly~i~~k~~~~g~~~k~~~iVM 739 (912)
-+|-.|.+... .|+..|+|-.+..|.++...+.+. . -..++++|+|.... .|. .+|+|
T Consensus 6 vaGH~g~l~~~-~~~g~i~Kp~~~~E~~fY~~l~~~---~--------L~~fvP~y~G~~~~------~~~----~~i~L 63 (276)
T 1w2f_A 6 LAGHTGSFKAA-GTSGLILKRCSEPERYCLARLMAD---A--------LRGCVPAFHGVVER------DGE----SYLQL 63 (276)
T ss_dssp HTTCCSCCEEC-SSTTEEEEECCHHHHHHHHHHHTS---G--------GGGGSCCEEEEEEE------TTE----EEEEE
T ss_pred EECCCCCEEEC-CCCCEEEEECCHHHHHHHHHHHHH---H--------HHHHCHHHHEEECC------CCC----EEEEE
T ss_conf 73788704416-999879836988999999985051---6--------77747064033535------882----59996
Q ss_pred EECCCCCCEEEEEECC
Q ss_conf 2137896311565037
Q 002527 740 ENLTFERNITRQYDLK 755 (912)
Q Consensus 740 eNlf~~~~i~~~YDLK 755 (912)
|||.++..-.-+-|||
T Consensus 64 EdLt~gf~~PcVmDiK 79 (276)
T 1w2f_A 64 QDLLDGFDGPCVLDCK 79 (276)
T ss_dssp ECTTTTCSSCEEEEEE
T ss_pred CHHHCCCCCCEEEEEE
T ss_conf 0675699985699987
No 5
>2iew_A Inositol polyphosphate multikinase; ATP-grAsp fold related, transferase; 2.00A {Saccharomyces cerevisiae} PDB: 2if8_A*
Probab=1.00 E-value=1 Score=31.26 Aligned_cols=92 Identities=16% Similarity=0.228 Sum_probs=50.5
Q ss_pred CCCCCCEEEEECCCCEEEEECCHHHHHHHHHHHHHHHHHHHH--HCCCCCCCCHHEEEEEEEEEEECCC-----------
Q ss_conf 987541078642893899737889999999999999999852--0389998411212347899543269-----------
Q 002527 661 GGKSKSFFVKTLDDRFIIKEIKKTEFDSFDKFALHYFKYMNE--SFDSGNQTCLAKVLGIYQVTIRQPK----------- 727 (912)
Q Consensus 661 gGKSGs~F~~T~D~rFIIKtisk~E~~~l~k~lp~Yf~yi~~--~~~~~~~TlL~Ki~Gly~i~~k~~~----------- 727 (912)
+|-.| ++...|+.+|+|-.+..|+++...+...=+..... .......-++++|+|+..+......
T Consensus 15 aGH~g--~l~~~dg~~i~Kp~~~~E~~FYe~l~~~~~~~~~~~~~~~~~L~~fvP~y~G~~~~~~~~~~~~~~~~~~~~~ 92 (363)
T 2iew_A 15 AGHDG--TLTDGDGLLIFKPAFPQELEFYKAIQVRDVSRRKSSADGDAPLCSWMPTYLGVLNEGAKIEQSGDAALLKIDE 92 (363)
T ss_dssp -------------CCEEEEECCHHHHHHHHHHC------------CCCCGGGGSCCEEEEEEC-----------------
T ss_pred CCCCC--EEECCCCCEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCEEEECCCCCCCCCCHHHCCCCC
T ss_conf 57866--0075999979286986899999998650355443445543667841756530673156433333100000233
Q ss_pred ----------C----CCEEEEEEEEEEECCCCCCEEEEEECC
Q ss_conf ----------9----932579999982137896311565037
Q 002527 728 ----------S----GKEMRHDLMVMENLTFERNITRQYDLK 755 (912)
Q Consensus 728 ----------~----g~~~k~~~iVMeNlf~~~~i~~~YDLK 755 (912)
. +.. ...|||||||.++..-.-+-|||
T Consensus 93 ~~~~~~~~~~~~~~~~~~-~~~~i~LEdLt~gf~~PcVlDiK 133 (363)
T 2iew_A 93 RLSDSTDNLDSIPVKSEK-SKQYLVLENLLYGFSKPNILDIK 133 (363)
T ss_dssp -------------------CCEEEEEECTTTTCSSEEEEEEE
T ss_pred CCCCCCCCHHCCCCCCCC-CCCEEEECHHHCCCCCCEEEEEE
T ss_conf 223476301013556778-76479860463488774588987
No 6
>2a98_A Inositol 1,4,5-trisphosphate 3-kinase C; structural genomics, structural genomics consortium, SGC, transferase; HET: I3P; 2.60A {Homo sapiens}
Probab=1.00 E-value=1 Score=29.99 Aligned_cols=62 Identities=19% Similarity=0.221 Sum_probs=45.6
Q ss_pred CCCEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHEEEEEEEEEEECCCCCCEEEEEEEEEEECCCCCCEEEEE
Q ss_conf 89389973788999999999999999985203899984112123478995432699932579999982137896311565
Q 002527 673 DDRFIIKEIKKTEFDSFDKFALHYFKYMNESFDSGNQTCLAKVLGIYQVTIRQPKSGKEMRHDLMVMENLTFERNITRQY 752 (912)
Q Consensus 673 D~rFIIKtisk~E~~~l~k~lp~Yf~yi~~~~~~~~~TlL~Ki~Gly~i~~k~~~~g~~~k~~~iVMeNlf~~~~i~~~Y 752 (912)
|+..|+|..+..|.++...+.+. ....++++++|.... .|. .+|+||||.++..-.-+-
T Consensus 1 ~~g~i~K~~~~~E~~fY~~l~~~-----------~L~~fvP~y~G~~~~------~~~----~~i~LEdLt~g~~~PcVm 59 (259)
T 2a98_A 1 EDGRILKRFCQCEQRSLEQLMKD-----------PLRPFVPAYYGMVLQ------DGQ----TFNQMEDLLADFEGPSIM 59 (259)
T ss_dssp CCSEEEEECCHHHHHHHHHHTTS-----------TTGGGSCCEEEEEEE------TTE----EEEEEECTTTTCSSCEEE
T ss_pred CCCEEECCCCHHHHHHHHHHHHH-----------HHHHHCCCCEEEEEE------CCC----EEEEEEHHHCCCCCCEEE
T ss_conf 99879231987999999986354-----------688748671489977------893----599960674699884699
Q ss_pred ECC
Q ss_conf 037
Q 002527 753 DLK 755 (912)
Q Consensus 753 DLK 755 (912)
|+|
T Consensus 60 DiK 62 (259)
T 2a98_A 60 DCK 62 (259)
T ss_dssp EEE
T ss_pred EEE
T ss_conf 987
No 7
>4frf_A Inositol polyphosphate multikinase alpha; ATP grAsp, inositol phosphate kinase, transferase; 2.90A {Arabidopsis thaliana}
Probab=1.00 E-value=1 Score=28.21 Aligned_cols=79 Identities=22% Similarity=0.272 Sum_probs=48.2
Q ss_pred CCCCCCCCEEEEECCCCEEEEECCH-----HHHHHHHHHHHH--HHHHHHHHCCCCCCCCHHEEEEEEEEEEECCCCCCE
Q ss_conf 9998754107864289389973788-----999999999999--999985203899984112123478995432699932
Q 002527 659 AKGGKSKSFFVKTLDDRFIIKEIKK-----TEFDSFDKFALH--YFKYMNESFDSGNQTCLAKVLGIYQVTIRQPKSGKE 731 (912)
Q Consensus 659 ~sgGKSGs~F~~T~D~rFIIKtisk-----~E~~~l~k~lp~--Yf~yi~~~~~~~~~TlL~Ki~Gly~i~~k~~~~g~~ 731 (912)
+.+|+.|.+. ..++ .|+|-+.. .|+++..++..+ ....+ ...+++|+|...+.-. .+
T Consensus 4 ~~~Gh~G~l~--~~~G-~v~KP~~~~~rg~~E~~FYe~l~~~~~~~~~L--------~~fvP~y~G~~~~~~~---~~-- 67 (275)
T 4frf_A 4 MKDGKPGPLV--DDKG-RFFKPLQGDSRGEIEVKFYESFSSNTEVPEHI--------HRYFPVYHGTQAVEGS---DG-- 67 (275)
T ss_dssp -----------------------------CCHHHHHHHHHHCTTSCHHH--------HTTSCCBCCC-------------
T ss_pred CCCCCCCCEE--CCCC-CEEEECCCCCCCHHHHHHHHHHHHCCCCHHHH--------HHHCCCCCEEEEECCC---CC--
T ss_conf 7899777218--8997-58832689876558999999874278760779--------9637677625871378---98--
Q ss_pred EEEEEEEEEECCCCCCEEEEEECC
Q ss_conf 579999982137896311565037
Q 002527 732 MRHDLMVMENLTFERNITRQYDLK 755 (912)
Q Consensus 732 ~k~~~iVMeNlf~~~~i~~~YDLK 755 (912)
..+||||||.++..-.-+-|||
T Consensus 68 --~~~i~LEdLt~gf~~PcVlDiK 89 (275)
T 4frf_A 68 --AAMMVLENLLAEYTKPSVMDVK 89 (275)
T ss_dssp ----CCCBCCGGGGCSSEEEEEEE
T ss_pred --CCEEEEEECCCCCCCCCEEEEE
T ss_conf --6679986354566787335764
No 8
>2con_A RUH-035 protein, NIN one binding protein; ribosome, RNA binding protein, unknown function, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.15.1
Probab=1.00 E-value=1 Score=19.56 Aligned_cols=31 Identities=16% Similarity=0.306 Sum_probs=24.4
Q ss_pred CCCCCCCCCCCCCCCEEEEECCCEEEEEEEE
Q ss_conf 7889989997012420323318258999986
Q 002527 12 RKQCASCSELPEAHFYYYARHNKQLTIRVKR 42 (912)
Q Consensus 12 ~~~C~sC~~pm~~Hvr~YvH~~g~ltI~v~~ 42 (912)
..=||.||-+-+..+-++|..+|.+++.+++
T Consensus 30 k~FCp~CGn~TL~Rvsvsvd~~G~~~~hl~~ 60 (79)
T 2con_A 30 RVFCGHCGNKTLKKVSVTINDDGTLHMHFSR 60 (79)
T ss_dssp CCSCSSSCCSCCEEEECBCCSSCCCBCCCCC
T ss_pred CCCCCCCCCCCCEEEEEEECCCCCEEEECCC
T ss_conf 4316326955001899998899859995467
No 9
>3ts3_A Capsid polyprotein; virus protein, projection domain, astrovirus capsid, viral P; 1.49A {Turkey astrovirus 2}
Probab=1.00 E-value=1 Score=19.49 Aligned_cols=51 Identities=20% Similarity=0.342 Sum_probs=31.5
Q ss_pred EEEEEECHHH---HHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCEEEE
Q ss_conf 5999906999---99999871999688999741377788999875410786428938997
Q 002527 623 YSVKCLYANQ---FRDLRSRCCPSELAYIDSLSRCRNWDAKGGKSKSFFVKTLDDRFIIK 679 (912)
Q Consensus 623 f~~~~y~p~~---F~~LR~~~gi~e~dy~~SL~~~~~~~~sgGKSGs~F~~T~D~rFIIK 679 (912)
-.++-|||.- =+.|..+....|-|=+.|+ ....|+-+++||.|.|+||||-
T Consensus 115 PavkkyyP~Ttn~dq~lk~r~nl~egDpvism------gdt~Grraalfyrtsder~ill 168 (208)
T 3ts3_A 115 PAIQKYYPGTTNLDEQLKQRLNLAEGDPVISM------GDTNGRRAALFYRTSDEKYILF 168 (208)
T ss_dssp TTEEEBCGGGCCSCHHHHHHHCCCTTCEEEEE------EETTCCEEEEEEETTTTEEEEE
T ss_pred CHHHHCCCCCCCHHHHHHHHHCCCCCCCEEEE------CCCCCCEEEEEEECCCCEEEEE
T ss_conf 11322178865410445554211358953320------3667842331231268639999
No 10
>2y35_A LD22664P; hydrolase-DNA complex, RNA degradation, exonuclease 5'-3', R interference; 3.20A {Drosophila melanogaster}
Probab=1.00 E-value=1 Score=17.41 Aligned_cols=70 Identities=13% Similarity=0.166 Sum_probs=49.8
Q ss_pred CCCCCCCCCCCCCCCCC----CCEEEEECC-------CEEEEEEEECCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCC
Q ss_conf 12467889989997012----420323318-------2589999867985478887899389942277676799999888
Q 002527 8 NILQRKQCASCSELPEA----HFYYYARHN-------KQLTIRVKRLPDRIRLSGEAEGKLWMWSRCGRCKTANGVPKST 76 (912)
Q Consensus 8 ~~~q~~~C~sC~~pm~~----Hvr~YvH~~-------g~ltI~v~~l~~~~~lpGe~~gkI~MWs~C~~C~~~~g~p~~T 76 (912)
.||- +|-++|++.++ +.+.|+|.. ..+.|++.- ..+|||.|+||.-|-|..+... +..|.|
T Consensus 126 ~fds--n~ITPGT~FM~~l~~~L~~~i~~k~~~d~~w~~~~Vi~S~----~~vPGEGEhKIm~~IR~~~~~p--~~~pn~ 197 (1140)
T 2y35_A 126 RFDS--NCITPGTEFMVRLQEGLRAFLKTKISTDPLWQRCTVILSG----QEAPGEGEHKIMDYIRYMKTQP--DYDPNT 197 (1140)
T ss_dssp CCCS--GGGSTTSHHHHHHHHHHHHHHHHHHHHCGGGSSSEEEEEC----SSSCSCHHHHHHHHHHHHHHST--TCCTTC
T ss_pred CCCC--CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEC----CCCCCCHHHHHHHHHHHHHHCC--CCCCCC
T ss_conf 6774--6218980899999999999999985168564660899969----8989852899999999986478--989997
Q ss_pred CEEECCCCC
Q ss_conf 526544453
Q 002527 77 KRVVISTAA 85 (912)
Q Consensus 77 p~vpMSd~a 85 (912)
+.+.-+-||
T Consensus 198 ~HciyG~DA 206 (1140)
T 2y35_A 198 RHCLYGLDA 206 (1140)
T ss_dssp CEEEECCSH
T ss_pred EEEEECCCH
T ss_conf 089983677
Done!