Query 002528
Match_columns 912
No_of_seqs 311 out of 516
Neff 3.5
Searched_HMMs 29240
Date Tue Mar 26 16:03:13 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002528.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1248-1252//hhsearch_pdb/002528hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ltq_A Polynucleotide kinase; 1.0 1 1 82.0 10.2 135 703-853 152-294 (301)
2 3ocu_A Lipoprotein E; hydrolas 1.0 1 1 75.8 6.8 114 707-844 56-188 (262)
3 3pct_A Class C acid phosphatas 1.0 1 1 73.2 8.5 113 708-844 57-188 (260)
4 2i33_A Acid phosphatase; HAD s 1.0 1 1 68.0 2.4 113 708-845 58-188 (258)
5 3ib6_A Uncharacterized protein 1.0 1 1 61.1 8.4 128 709-852 3-138 (189)
6 2wm8_A MDP-1, magnesium-depend 1.0 1 1 60.8 9.8 122 708-852 26-160 (187)
7 2gmw_A D,D-heptose 1,7-bisphos 1.0 1 1 60.7 11.3 130 709-852 25-171 (211)
8 3zvl_A Bifunctional polynucleo 1.0 1 1 60.3 9.5 126 707-851 56-213 (416)
9 2obb_A Hypothetical protein; s 1.0 1 1 58.0 7.3 62 709-777 3-64 (142)
10 3l8h_A Putative haloacid dehal 1.0 1 1 57.7 11.6 131 710-860 2-146 (179)
No 1
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=1.00 E-value=1 Score=82.01 Aligned_cols=135 Identities=21% Similarity=0.180 Sum_probs=93.0
Q ss_pred EEECC-CCEEEEEECCCCCCCCCCCCCCCCC----CCCCCCCHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHH
Q ss_conf 85308-9919999167984245655766777----787988467999999999889819999148266699999999963
Q 002528 703 YLWKW-NAKIVISDVDGTITKSDVLGQFMPL----VGKDWTQSGVAKLFSAIKENGYQLLFLSARAIVQAYLTRSFLLNL 777 (912)
Q Consensus 703 yLW~~-~dKVVISDIDGTITkSDvlGhilP~----vGKDWth~GVAkLy~~I~~NGYkILYLSARaigqAd~TR~wL~~v 777 (912)
|+.+. ..+++++|+|||+.... +..|+ +++....+|+.+++..++.+||++.++|+|+..++..++.||..+
T Consensus 152 ~~~~~~~~~~i~iD~dgtl~~~~---~~~~~~~~~~~~~~~~~g~~e~L~~L~~~g~~~~v~T~k~~~~~~~~~~~l~~~ 228 (301)
T 1ltq_A 152 YNGTPGKPKAVIFDVDGTLAKMN---GRGPYDLEKCDTDVINPMVVELSKMYALMGYQIVVVSGRESGTKEDPTKYYRMT 228 (301)
T ss_dssp CCCCTTSCEEEEEETBTTTBCCS---SCCTTCGGGGGGCCBCHHHHHHHHHHHHTTCEEEEEECSCCCCSSSTTHHHHHH
T ss_pred EECCCCCCCEEEEECCCCCCCCC---CCCCHHHHHCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHC
T ss_conf 31255546569993778711446---778355640666679868999999999779869999389843314289999860
Q ss_pred H---HCCCCCCCCCEEECCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHCCCCCC
Q ss_conf 3---189899999644099999730011001259489999999999873999999699960990666999996399988
Q 002528 778 K---QDGNALPNGPVVISPDGLFPSLFREVIRRAPHEFKIACLEDIKKLFPSDYNPFYAGFGNRDTDELSYRKIGIPKG 853 (912)
Q Consensus 778 ~---Q~G~~LP~GPvLLSPd~Lf~ALrREvi~RkPe~FKie~L~dIk~LFP~~~nPFyAGFGNR~tDV~aYR~VGIp~~ 853 (912)
. ++..+|+...+.+..+. ..|++...|..++..+.. +.....++ +||+..|+.+++++|+++-
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~---------~~kp~p~~~~~~~~~~~~---~~~~~~~~-vgD~~~di~~a~~aG~~~~ 294 (301)
T 1ltq_A 229 RKWVEDIAGVPLVMQCQREQG---------DTRKDDVVKEEIFWKHIA---PHFDVKLA-IDDRTQVVEMWRRIGVECW 294 (301)
T ss_dssp HHHHHHTTCCCCSEEEECCTT---------CCSCHHHHHHHHHHHHTT---TTCEEEEE-EECCHHHHHHHHHTTCCEE
T ss_pred CCCCCCCCCCCCHHEEECCCC---------CCCHHHHHHHHHHHHHHC---CCCCEEEE-ECCCHHHHHHHHHCCCEEE
T ss_conf 432222358982113553678---------876889999999999734---36424888-2781789999998499179
No 2
>3ocu_A Lipoprotein E; hydrolase, outer membrane; HET: NMN; 1.35A {Haemophilus influenzae} PDB: 3ocv_A* 3ocw_A* 3ocx_A* 3ocz_A* 3ocy_A* 3sf0_A* 2hlk_A 2hll_A 3et4_A 3et5_A
Probab=1.00 E-value=1 Score=75.78 Aligned_cols=114 Identities=15% Similarity=0.170 Sum_probs=82.2
Q ss_pred CCCEEEEEECCCCCCCCCCC----C-CCCCC----------CCCCCCCHHHHHHHHHHHHCCCEEEEECCCHHH-HHHHH
Q ss_conf 89919999167984245655----7-66777----------787988467999999999889819999148266-69999
Q 002528 707 WNAKIVISDVDGTITKSDVL----G-QFMPL----------VGKDWTQSGVAKLFSAIKENGYQLLFLSARAIV-QAYLT 770 (912)
Q Consensus 707 ~~dKVVISDIDGTITkSDvl----G-hilP~----------vGKDWth~GVAkLy~~I~~NGYkILYLSARaig-qAd~T 770 (912)
...++||+|||||++..... + ...++ .+.....+|+.++++.++..|++++|+|+|+.. ++..|
T Consensus 56 ~~~~avVfDIDgTlldn~~y~~~~~~~~~~f~~~~w~~wv~~~~~~~~pG~~ell~~L~~~G~ki~ivTgR~~~~~r~~T 135 (262)
T 3ocu_A 56 GKKKAVVADLNETMLDNSPYAGWQVQNNKPFDGKDWTRWVDARQSRAVPGAVEFNNYVNSHNGKVFYVTNRKDSTEKSGT 135 (262)
T ss_dssp TCEEEEEECCBTTTEECHHHHHHHHHHTCCCCHHHHHHHHHHTCCEECTTHHHHHHHHHHTTEEEEEEEEEETTTTHHHH
T ss_pred CCCEEEEEECCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHH
T ss_conf 99849999899768777065665322556689889999998278877725999999999879949998189850219999
Q ss_pred HHHHHHHHHCCCCCCC-C--CEEECCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHH
Q ss_conf 9999963318989999-9--644099999730011001259489999999999873999999699960990666999
Q 002528 771 RSFLLNLKQDGNALPN-G--PVVISPDGLFPSLFREVIRRAPHEFKIACLEDIKKLFPSDYNPFYAGFGNRDTDELS 844 (912)
Q Consensus 771 R~wL~~v~Q~G~~LP~-G--PvLLSPd~Lf~ALrREvi~RkPe~FKie~L~dIk~LFP~~~nPFyAGFGNR~tDV~a 844 (912)
..||..+ ++|. . .|++.++ . ..|...+..|... ++.+ .+-+||-..|...
T Consensus 136 ~~~L~~l-----Gi~~~~~~~Lilr~~-------------~--~~K~~~r~~l~~~---Gy~i-v~~vGD~~~Dl~~ 188 (262)
T 3ocu_A 136 IDDMKRL-----GFNGVEESAFYLKKD-------------K--SAKAARFAEIEKQ---GYEI-VLYVGDNLDDFGN 188 (262)
T ss_dssp HHHHHHH-----TCSCCSGGGEEEESS-------------C--SCCHHHHHHHHHT---TEEE-EEEEESSGGGGCS
T ss_pred HHHHHHC-----CCCCCCCCCEECCCC-------------C--CCHHHHHHHHHHC---CCCE-EEEECCCHHHHCC
T ss_conf 9999982-----969556541350688-------------8--9749999999964---9978-9997998678265
No 3
>3pct_A Class C acid phosphatase; hydrolase, outer membrane; 1.85A {Pasteurella multocida}
Probab=1.00 E-value=1 Score=73.16 Aligned_cols=113 Identities=16% Similarity=0.175 Sum_probs=82.5
Q ss_pred CCEEEEEECCCCCCCCCCC----C-CCCCC----------CCCCCCCHHHHHHHHHHHHCCCEEEEECCCHHH-HHHHHH
Q ss_conf 9919999167984245655----7-66777----------787988467999999999889819999148266-699999
Q 002528 708 NAKIVISDVDGTITKSDVL----G-QFMPL----------VGKDWTQSGVAKLFSAIKENGYQLLFLSARAIV-QAYLTR 771 (912)
Q Consensus 708 ~dKVVISDIDGTITkSDvl----G-hilP~----------vGKDWth~GVAkLy~~I~~NGYkILYLSARaig-qAd~TR 771 (912)
..++||+|||||++.+... | +..++ .+.....+|+.++++.++..|++++|+|+|+.. ++..|.
T Consensus 57 ~~~avVfDIDgTlldn~~y~~~~~~~~~~f~~~~w~~wv~~g~~~~~pg~~ell~~L~~~G~~i~ivTgR~~~~~r~~T~ 136 (260)
T 3pct_A 57 KKKAVVVDLDETMIDNSAYAGWQVQSGQGFSPKTWTKWVDARQSAAIPGAVEFSNYVNANGGTMFFVSNRRDDVEKAGTV 136 (260)
T ss_dssp -CEEEEECCBTTTEECHHHHHHHHHHTCCCCHHHHHHHHHTTCCEECTTHHHHHHHHHHTTCEEEEEEEEETTTSHHHHH
T ss_pred CCCEEEEECCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCHHHHH
T ss_conf 99989998985674781677763246777887899999983788778039999999998799599970898613099999
Q ss_pred HHHHHHHHCCCCCCCC---CEEECCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHH
Q ss_conf 9999633189899999---644099999730011001259489999999999873999999699960990666999
Q 002528 772 SFLLNLKQDGNALPNG---PVVISPDGLFPSLFREVIRRAPHEFKIACLEDIKKLFPSDYNPFYAGFGNRDTDELS 844 (912)
Q Consensus 772 ~wL~~v~Q~G~~LP~G---PvLLSPd~Lf~ALrREvi~RkPe~FKie~L~dIk~LFP~~~nPFyAGFGNR~tDV~a 844 (912)
.||..+ ++|.. .|++.++ . ..|...+..|... ++.+ .+-+||-..|..+
T Consensus 137 ~~L~~l-----Gi~~~~~~~Lilr~~-------------~--~~K~~~r~~L~~~---gy~i-v~~iGD~~~Dl~~ 188 (260)
T 3pct_A 137 DDMKRL-----GFTGVNDKTLLLKKD-------------K--SNKSVRFKQVEDM---GYDI-VLFVGDNLNDFGD 188 (260)
T ss_dssp HHHHHH-----TCCCCSTTTEEEESS-------------C--SSSHHHHHHHHTT---TCEE-EEEEESSGGGGCG
T ss_pred HHHHHC-----CCCCCCCCEEEECCC-------------C--CCHHHHHHHHHHC---CCCE-EEEECCCHHHCCC
T ss_conf 999981-----959656651573589-------------9--8769999999956---9978-9997998677075
No 4
>2i33_A Acid phosphatase; HAD superfamily, hydrolase; 1.57A {Bacillus anthracis} PDB: 2i34_A
Probab=1.00 E-value=1 Score=67.95 Aligned_cols=113 Identities=13% Similarity=0.200 Sum_probs=72.2
Q ss_pred CCEEEEEECCCCCCCCCCC-----CCCCCCCCCCC----------CCHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHH
Q ss_conf 9919999167984245655-----76677778798----------84679999999998898199991482666999999
Q 002528 708 NAKIVISDVDGTITKSDVL-----GQFMPLVGKDW----------TQSGVAKLFSAIKENGYQLLFLSARAIVQAYLTRS 772 (912)
Q Consensus 708 ~dKVVISDIDGTITkSDvl-----GhilP~vGKDW----------th~GVAkLy~~I~~NGYkILYLSARaigqAd~TR~ 772 (912)
..++||+||||||+.+... ....++ ...| ..+|+.++++.++.+|++|.++|+|+...+..+..
T Consensus 58 ~~kavifDlDGTLld~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~pg~~e~L~~L~~~Gi~i~iaTnr~~~~~~~~~~ 136 (258)
T 2i33_A 58 KKPAIVLDLDETVLDNSPHQAMSVKTGKGY-PYKWDDWINKAEAEALPGSIDFLKYTESKGVDIYYISNRKTNQLDATIK 136 (258)
T ss_dssp SEEEEEECSBTTTEECHHHHHHHHHHSCCT-TTTHHHHHHHCCCEECTTHHHHHHHHHHTTCEEEEEEEEEGGGHHHHHH
T ss_pred CCCEEEEECCCCCCCCHHHHHHHHHCCCCH-HHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCHHHHHHHHH
T ss_conf 997899938666767989999998356636-7899999970899758339999999998899799984995657999999
Q ss_pred HHHHHHHCCCCCC---CCCEEECCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHH
Q ss_conf 9996331898999---996440999997300110012594899999999998739999996999609906669999
Q 002528 773 FLLNLKQDGNALP---NGPVVISPDGLFPSLFREVIRRAPHEFKIACLEDIKKLFPSDYNPFYAGFGNRDTDELSY 845 (912)
Q Consensus 773 wL~~v~Q~G~~LP---~GPvLLSPd~Lf~ALrREvi~RkPe~FKie~L~dIk~LFP~~~nPFyAGFGNR~tDV~aY 845 (912)
+|... +|+ .--++++.+. . .++...+. +... ++.+... +||...|+.+=
T Consensus 137 ~L~~~-----Gl~~v~~~~vi~~~~~---------~-~K~~~~~~-----~~~~---~~~~~l~-VGDs~~Di~aA 188 (258)
T 2i33_A 137 NLERV-----GAPQATKEHILLQDPK---------E-KGKEKRRE-----LVSQ---THDIVLF-FGDNLSDFTGF 188 (258)
T ss_dssp HHHHH-----TCSSCSTTTEEEECTT---------C-CSSHHHHH-----HHHH---HEEEEEE-EESSGGGSTTC
T ss_pred HHHHC-----CCCCCCCCEEEECCCC---------C-CCCHHHHH-----HHHH---CCCCEEE-ECCCHHHHCCC
T ss_conf 99986-----9896777668977998---------7-88289999-----9972---8996599-69877776356
No 5
>3ib6_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.20A {Listeria monocytogenes}
Probab=1.00 E-value=1 Score=61.13 Aligned_cols=128 Identities=16% Similarity=0.212 Sum_probs=78.2
Q ss_pred CEEEEEECCCCCCCCCCC---CCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 919999167984245655---76677778798846799999999988981999914826669999999996331898999
Q 002528 709 AKIVISDVDGTITKSDVL---GQFMPLVGKDWTQSGVAKLFSAIKENGYQLLFLSARAIVQAYLTRSFLLNLKQDGNALP 785 (912)
Q Consensus 709 dKVVISDIDGTITkSDvl---GhilP~vGKDWth~GVAkLy~~I~~NGYkILYLSARaigqAd~TR~wL~~v~Q~G~~LP 785 (912)
-|+||+|+||||+..... .+.......-...+|+.++++.++++||++..+|+++.......+..|... +|.
T Consensus 3 ik~vifD~DgtL~~~~~~~y~~~~~~~~~~~~~~~g~~~~L~~L~~~g~~~~i~Tn~~~~~~~~~~~~l~~~-----gl~ 77 (189)
T 3ib6_A 3 LTHVIWDMGETLNTVPNTRYDHHPLDTYPEVVLRKNAKETLEKVKQLGFKQAILSNTATSDTEVIKRVLTNF-----GII 77 (189)
T ss_dssp CCEEEECTBTTTBCCCTTSSCSSCGGGCTTCCBCTTHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHHT-----TCG
T ss_pred CEEEEECCCCCEEECCCHHHHHHHHHCCCCCEECCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHC-----CCH
T ss_conf 408998689946523400245678750577604828999999999779979999799755508899999865-----945
Q ss_pred C--CCEEECCCCCCCHHHHHHCCCCCH--HHHHHHHHHHHHHCCCCCCCEEEEECCC-HHHHHHHHHCCCCC
Q ss_conf 9--964409999973001100125948--9999999999873999999699960990-66699999639998
Q 002528 786 N--GPVVISPDGLFPSLFREVIRRAPH--EFKIACLEDIKKLFPSDYNPFYAGFGNR-DTDELSYRKIGIPK 852 (912)
Q Consensus 786 ~--GPvLLSPd~Lf~ALrREvi~RkPe--~FKie~L~dIk~LFP~~~nPFyAGFGNR-~tDV~aYR~VGIp~ 852 (912)
. .-+..+.+. .. ....+||. .|+. +++.+. + ...-.+. +||+ .+|+.+-+++|+..
T Consensus 78 ~~fd~i~~~~~~-~~----~~~~~KP~p~~~~~-~~~~~~-~---~~~~~l~-VGD~~~~Di~~A~~aG~~~ 138 (189)
T 3ib6_A 78 DYFDFIYASNSE-LQ----PGKMEKPDKTIFDF-TLNALQ-I---DKTEAVM-VGNTFESDIIGANRAGIHA 138 (189)
T ss_dssp GGEEEEEECCTT-SS----TTCCCTTSHHHHHH-HHHHHT-C---CGGGEEE-EESBTTTTHHHHHHTTCEE
T ss_pred HHEEEEEECCCC-CC----CCCCCCCCHHHHHH-HHHHCC-C---CCCCEEE-ECCCCHHHHHHHHHCCCEE
T ss_conf 565899971532-34----55789969899999-999859-7---9460899-8789678799999879939
No 6
>2wm8_A MDP-1, magnesium-dependent phosphatase 1; haloacid dehalogenase, protein phosphatase, hydrolase, magne metal-binding; 1.75A {Homo sapiens} PDB: 1u7o_A 1u7p_A
Probab=1.00 E-value=1 Score=60.75 Aligned_cols=122 Identities=13% Similarity=0.032 Sum_probs=70.5
Q ss_pred CCEEEEEECCCCCCCCCCCCCCCCC-------------CCCCCCCHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHH
Q ss_conf 9919999167984245655766777-------------787988467999999999889819999148266699999999
Q 002528 708 NAKIVISDVDGTITKSDVLGQFMPL-------------VGKDWTQSGVAKLFSAIKENGYQLLFLSARAIVQAYLTRSFL 774 (912)
Q Consensus 708 ~dKVVISDIDGTITkSDvlGhilP~-------------vGKDWth~GVAkLy~~I~~NGYkILYLSARaigqAd~TR~wL 774 (912)
..|+||+|+||||...-...++.+. ...-...+|+.++++.++++||++..+|+++. ...++.+|
T Consensus 26 ~~k~vifDlDGTL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~e~L~~L~~~G~~v~ivT~~~~--~~~~~~~l 103 (187)
T 2wm8_A 26 LPKLAVFDLDYTLWPFWVDTHVDPPFHKSSDGTVRDRRGQDVRLYPEVPEVLKRLQSLGVPGAAASRTSE--IEGANQLL 103 (187)
T ss_dssp SCSEEEECSBTTTBSSCTTTSSCSCCEECTTSCEECTTCCEECCCTTHHHHHHHHHHHTCCEEEEECCSC--HHHHHHHH
T ss_pred CCCEEEECCCCCCCHHHHHHCCCCCHHHHCCCCHHHCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCC--HHHHHHHH
T ss_conf 0689999289981257776146842533124201231486257560199999999977965999958997--59999999
Q ss_pred HHHHHCCCCCCCCCEEECCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHCCCCC
Q ss_conf 963318989999964409999973001100125948999999999987399999969996099066699999639998
Q 002528 775 LNLKQDGNALPNGPVVISPDGLFPSLFREVIRRAPHEFKIACLEDIKKLFPSDYNPFYAGFGNRDTDELSYRKIGIPK 852 (912)
Q Consensus 775 ~~v~Q~G~~LP~GPvLLSPd~Lf~ALrREvi~RkPe~FKie~L~dIk~LFP~~~nPFyAGFGNR~tDV~aYR~VGIp~ 852 (912)
... +|. ..|.... -....+|. .+..+...+.-...-.+. +||+..|+.+-+++|+++
T Consensus 104 ~~~-----gl~---------~~f~~~~-~~~~~k~~-----~~~~~~~~~~~~~~~~~~-igD~~~Di~~a~~aG~~~ 160 (187)
T 2wm8_A 104 ELF-----DLF---------RYFVHRE-IYPGSKIT-----HFERLQQKTGIPFSQMIF-FDDERRNIVDVSKLGVTC 160 (187)
T ss_dssp HHT-----TCT---------TTEEEEE-ESSSCHHH-----HHHHHHHHHCCCGGGEEE-EESCHHHHHHHHTTTCEE
T ss_pred HHC-----CCH---------HHCCEEE-EEECCHHH-----HHHHHHHHCCCCHHHEEE-EECCCCCHHHHHHCCCEE
T ss_conf 983-----967---------4534447-98676689-----999999984999678899-938741758899769989
No 7
>2gmw_A D,D-heptose 1,7-bisphosphate phosphatase; Zn-binding protein, hydrolase; 1.50A {Escherichia coli} SCOP: c.108.1.19 PDB: 3esq_A 3esr_A 3l1u_A 3l1v_A 3l8e_A 3l8f_A 3l8g_A*
Probab=1.00 E-value=1 Score=60.73 Aligned_cols=130 Identities=15% Similarity=0.156 Sum_probs=76.4
Q ss_pred CEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCHHHH------------HHHHHHHHHH
Q ss_conf 9199991679842456557667777879884679999999998898199991482666------------9999999996
Q 002528 709 AKIVISDVDGTITKSDVLGQFMPLVGKDWTQSGVAKLFSAIKENGYQLLFLSARAIVQ------------AYLTRSFLLN 776 (912)
Q Consensus 709 dKVVISDIDGTITkSDvlGhilP~vGKDWth~GVAkLy~~I~~NGYkILYLSARaigq------------Ad~TR~wL~~ 776 (912)
-|++++|+||||+..+.. ......-...+|+.++++.++++||++.++|+++... ....+..|..
T Consensus 25 ~k~v~~D~DGTL~~~~~~---~~~~~~~~~~pg~~e~L~~L~~~G~~~~ivTn~~~~~~~~~~~~~~~~~~~~~~~~l~~ 101 (211)
T 2gmw_A 25 VPAIFLDRDGTINVDHGY---VHEIDNFEFIDGVIDAMRELKKMGFALVVVTNQSGIARGKFTEAQFETLTEWMDWSLAD 101 (211)
T ss_dssp BCEEEECSBTTTBCCCSS---CCSGGGCCBCTTHHHHHHHHHHTTCEEEEEEECTHHHHTSSCHHHHHHHHHHHHHHHHH
T ss_pred CCEEEECCCCCEECCCCC---CCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 989999399971889986---66712276886899999999988995999979598678846799999999999999998
Q ss_pred HHHCCCCCCCCCEEECCC---CCCCHHHHHHCCCC--CHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHCCCC
Q ss_conf 331898999996440999---99730011001259--4899999999998739999996999609906669999963999
Q 002528 777 LKQDGNALPNGPVVISPD---GLFPSLFREVIRRA--PHEFKIACLEDIKKLFPSDYNPFYAGFGNRDTDELSYRKIGIP 851 (912)
Q Consensus 777 v~Q~G~~LP~GPvLLSPd---~Lf~ALrREvi~Rk--Pe~FKie~L~dIk~LFP~~~nPFyAGFGNR~tDV~aYR~VGIp 851 (912)
. +++.-.++.+++ ........++..+| |+.|+..+ +.+. + .+ ...++ +||+.+|+.+-+++|+.
T Consensus 102 ~-----gl~f~~~~~~~~~~~~~~~~~~~~~~~~KP~p~~~~~~~-~~lg-i-~~--~~~~~-VGD~~~Di~~a~~aG~~ 170 (211)
T 2gmw_A 102 R-----DVDLDGIYYCPHHPQGSVEEFRQVCDCRKPHPGMLLSAR-DYLH-I-DM--AASYM-VGDKLEDMQAAVAANVG 170 (211)
T ss_dssp T-----TCCCSEEEEECCBTTCSSGGGBSCCSSSTTSCHHHHHHH-HHHT-B-CG--GGCEE-EESSHHHHHHHHHTTCS
T ss_pred C-----CCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHH-HHCC-C-CH--HHEEE-ECCCHHHHHHHHHCCCC
T ss_conf 5-----996577997876877756666766757999989999999-9839-9-98--99799-84888889999987994
Q ss_pred C
Q ss_conf 8
Q 002528 852 K 852 (912)
Q Consensus 852 ~ 852 (912)
.
T Consensus 171 ~ 171 (211)
T 2gmw_A 171 T 171 (211)
T ss_dssp E
T ss_pred E
T ss_conf 6
No 8
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=1.00 E-value=1 Score=60.28 Aligned_cols=126 Identities=21% Similarity=0.373 Sum_probs=78.7
Q ss_pred CCCEEEEEECCCCCCCCCCCCCCCCCCCCCCC--CHHHHHHHHHHHHCCCEEEEECCCH---------HHHHHHHHHHHH
Q ss_conf 89919999167984245655766777787988--4679999999998898199991482---------666999999999
Q 002528 707 WNAKIVISDVDGTITKSDVLGQFMPLVGKDWT--QSGVAKLFSAIKENGYQLLFLSARA---------IVQAYLTRSFLL 775 (912)
Q Consensus 707 ~~dKVVISDIDGTITkSDvlGhilP~vGKDWt--h~GVAkLy~~I~~NGYkILYLSARa---------igqAd~TR~wL~ 775 (912)
...|+|++|+||||..... |..++....+|. .+|+.++++.++++||++..+|+++ .......+..|.
T Consensus 56 ~~~k~v~fD~DGTL~~~~~-~~~~~~~~~~~~~~~pgv~e~L~~L~~~G~~l~IvTN~~gi~~g~~~~~~~~~~~~~~l~ 134 (416)
T 3zvl_A 56 PQGKVAAFDLDGTLITTRS-GKVFPTSPSDWRILYPEIPKKLQELAAEGYKLVIFTNQMGIGRGKLPAEVFKGKVEAVLE 134 (416)
T ss_dssp CCSSEEEECSBTTTEECSS-CSSSCSSTTCCEESCTTHHHHHHHHHHTTCEEEEEEECHHHHTTSSCHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCCCCC-CCCCCCCHHHHHHHCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 7770899968897253078-766788989950335459999999997899699996983014787799999999999999
Q ss_pred HHHHCCCCCCCCCEEECCCCCCCHHHHHHCCCCCH--HHHHHHHHHHHH--HCCCCCCCEEEEECCCH------------
Q ss_conf 63318989999964409999973001100125948--999999999987--39999996999609906------------
Q 002528 776 NLKQDGNALPNGPVVISPDGLFPSLFREVIRRAPH--EFKIACLEDIKK--LFPSDYNPFYAGFGNRD------------ 839 (912)
Q Consensus 776 ~v~Q~G~~LP~GPvLLSPd~Lf~ALrREvi~RkPe--~FKie~L~dIk~--LFP~~~nPFyAGFGNR~------------ 839 (912)
.+ +++.--++.+. ++..+||. .|... ++.+.. -..+. .. +. +||+.
T Consensus 135 ~l-----gl~fd~i~~~~---------~~~~~KP~p~~~~~a-~~~l~~~~~v~~~-~~-l~-VGDs~gr~~~~~~~~~~ 196 (416)
T 3zvl_A 135 KL-----GVPFQVLVATH---------AGLNRKPVSGMWDHL-QEQANEGIPISVE-DS-VF-VGDAAGRLANWAPGRKK 196 (416)
T ss_dssp HH-----TSCCEEEEECS---------SSTTSTTSSHHHHHH-HHHSSTTCCCCGG-GC-EE-ECSCSCBCTTSSTTCCS
T ss_pred HC-----CCCEEEEEECC---------CCCCCCCCHHHHHHH-HHHHCCCCCCCHH-HE-EE-EECCCCCCCCCCCCCCC
T ss_conf 76-----99779999789---------898889988999999-9971778887779-94-99-97899986556666555
Q ss_pred -----HHHHHHHHCCCC
Q ss_conf -----669999963999
Q 002528 840 -----TDELSYRKIGIP 851 (912)
Q Consensus 840 -----tDV~aYR~VGIp 851 (912)
+|+.+=+++||.
T Consensus 197 ~d~s~~Di~~A~~aGi~ 213 (416)
T 3zvl_A 197 KDFSCADRLFALNVGLP 213 (416)
T ss_dssp CCSCCHHHHHHHHHTCC
T ss_pred CCCCHHHHHHHHHCCCC
T ss_conf 68774469999975986
No 9
>2obb_A Hypothetical protein; structural genomics, PSI-2, PR structure initiative, midwest center for structural genomic unknown function; 2.20A {Bacteroides thetaiotaomicron} SCOP: c.108.1.25
Probab=1.00 E-value=1 Score=57.99 Aligned_cols=62 Identities=18% Similarity=0.208 Sum_probs=50.4
Q ss_pred CEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHH
Q ss_conf 919999167984245655766777787988467999999999889819999148266699999999963
Q 002528 709 AKIVISDVDGTITKSDVLGQFMPLVGKDWTQSGVAKLFSAIKENGYQLLFLSARAIVQAYLTRSFLLNL 777 (912)
Q Consensus 709 dKVVISDIDGTITkSDvlGhilP~vGKDWth~GVAkLy~~I~~NGYkILYLSARaigqAd~TR~wL~~v 777 (912)
-|+|++||||||..++. +.+++. .+++.+..++++++|++|+++|||+......+..||..+
T Consensus 3 ~k~i~~DlDGTL~~~~~-----~~i~~~--~~~~~~al~~l~~~G~~iii~TgR~~~~~~~~~~~l~~~ 64 (142)
T 2obb_A 3 AMTIAVDFDGTIVEHRY-----PRIGEE--IPFAVETLKLLQQEKHRLILWSVREGELLDEAIEWCRAR 64 (142)
T ss_dssp CCEEEECCBTTTBCSCT-----TSCCCB--CTTHHHHHHHHHHTTCEEEECCSCCHHHHHHHHHHHHTT
T ss_pred CEEEEEECCCCCCCCCC-----CCCCCC--CHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHC
T ss_conf 70999978678898997-----654656--989999999999889989999289964499999999983
No 10
>3l8h_A Putative haloacid dehalogenase-like hydrolase; HAD superfamily, GMHB, D-glycero-D-manno-heptose-1, 7-bispho phosphatase; HET: FX1; 1.68A {Bordetella bronchiseptica}
Probab=1.00 E-value=1 Score=57.74 Aligned_cols=131 Identities=14% Similarity=0.233 Sum_probs=74.3
Q ss_pred EEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCHHH--------H----HHHHHHHHHHH
Q ss_conf 19999167984245655766777787988467999999999889819999148266--------6----99999999963
Q 002528 710 KIVISDVDGTITKSDVLGQFMPLVGKDWTQSGVAKLFSAIKENGYQLLFLSARAIV--------Q----AYLTRSFLLNL 777 (912)
Q Consensus 710 KVVISDIDGTITkSDvlGhilP~vGKDWth~GVAkLy~~I~~NGYkILYLSARaig--------q----Ad~TR~wL~~v 777 (912)
|+|++|+||||+... .+.......-...+|+.++.+.++++||++..+|+++.. . ....+..|...
T Consensus 2 k~v~~D~DGtL~~~~--~~~~~~~~~~~~~~g~~~~l~~L~~~g~~~~i~Tn~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 79 (179)
T 3l8h_A 2 KLIILDRDGVVNQDS--DAFVKSPDEWIALPGSLQAIARLTQADWTVVLATNQSGLARGLFDTATLNAIHDKMHRALAQM 79 (179)
T ss_dssp CEEEECSBTTTBCCC--TTCCCSGGGCCBCTTHHHHHHHHHHTTCEEEEEEECTTTTTTSSCHHHHHHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCCCCC--CCCCCCHHHCEECCCHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf 779985899633588--766799888567767899999999889989999799864567679999999999999999867
Q ss_pred HHCCCCCCCCCEEECCCCCCCHHHHHHCCCCC--HHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHCCCCCCCE
Q ss_conf 31898999996440999997300110012594--8999999999987399999969996099066699999639998868
Q 002528 778 KQDGNALPNGPVVISPDGLFPSLFREVIRRAP--HEFKIACLEDIKKLFPSDYNPFYAGFGNRDTDELSYRKIGIPKGKI 855 (912)
Q Consensus 778 ~Q~G~~LP~GPvLLSPd~Lf~ALrREvi~RkP--e~FKie~L~dIk~LFP~~~nPFyAGFGNR~tDV~aYR~VGIp~~RI 855 (912)
| .+...+...+.. . ..++..+|| +.|+. +++.+. + ++ .-.++ +||+.+|+.+-+++|+..
T Consensus 80 ---g--~~~~~~~~~~~~--~--~~~~~~~KP~~~~~~~-~~~~~~-~-~~--~~~~~-vGD~~~Di~~a~~aG~~~--- 141 (179)
T 3l8h_A 80 ---G--GVVDAIFMCPHG--P--DDGCACRKPLPGMYRD-IARRYD-V-DL--AGVPA-VGDSLRDLQAAAQAGCAP--- 141 (179)
T ss_dssp ---T--CCCCEEEEECCC--T--TSCCSSSTTSSHHHHH-HHHHHT-C-CC--TTCEE-EESSHHHHHHHHHHTCEE---
T ss_pred ---C--CCEEEEEECCCC--C--CCCCCCCCCCHHHHHH-HHHHCC-C-CH--HHEEE-ECCCHHHHHHHHHCCCCE---
T ss_conf ---9--966699976777--8--7787777998799999-999849-9-98--88799-789789999999879818---
Q ss_pred EEECC
Q ss_conf 99889
Q 002528 856 FIINP 860 (912)
Q Consensus 856 FtInp 860 (912)
..|..
T Consensus 142 i~v~~ 146 (179)
T 3l8h_A 142 WLVQT 146 (179)
T ss_dssp EEEST
T ss_pred EEECC
T ss_conf 99777
Done!