Query 002529
Match_columns 912
No_of_seqs 591 out of 4486
Neff 8.0
Searched_HMMs 29240
Date Tue Mar 26 16:21:49 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002529.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1248-1252//hhsearch_pdb/002529hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4aoj_A High affinity nerve gro 1.0 1 1 400.2 19.6 260 590-868 41-320 (329)
2 4asz_A BDNF/NT-3 growth factor 1.0 1 1 398.8 14.4 261 589-868 12-290 (299)
3 4gt4_A Tyrosine-protein kinase 1.0 1 1 398.5 16.1 264 585-867 21-306 (308)
4 4ase_A Vascular endothelial gr 1.0 1 1 387.8 11.7 266 586-869 60-349 (353)
5 3omv_A RAF proto-oncogene seri 1.0 1 1 384.0 19.3 263 587-868 33-301 (307)
6 4b9d_A Serine/threonine-protei 1.0 1 1 382.8 18.2 249 591-860 25-276 (350)
7 4fie_A Serine/threonine-protei 1.0 1 1 381.1 22.1 248 591-860 152-400 (423)
8 4fih_A Serine/threonine-protei 1.0 1 1 380.4 20.3 248 591-860 75-323 (346)
9 4g3f_A NF-kappa-beta-inducing 1.0 1 1 379.9 21.3 263 592-879 60-328 (336)
10 4aw0_A HPDK1, 3-phosphoinositi 1.0 1 1 372.1 13.7 246 591-859 33-283 (311)
No 1
>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}
Probab=1.00 E-value=1 Score=400.25 Aligned_cols=260 Identities=26% Similarity=0.426 Sum_probs=215.5
Q ss_pred HHHHHHCCCCCCCCEEEEEEEEC------CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCEEEE
Q ss_conf 99864050384660899999965------997999998147651456779999999983378985235469841772899
Q 002529 590 ATNNFCKKIGKGSFGSVYYGKMK------DGKEVAVKIMADSCSHRTQQFVTEVALLSRIHHRNLVPLIGYCEEEHQRIL 663 (912)
Q Consensus 590 ~~~~~~~~LG~G~fG~Vy~~~~~------~g~~vAvK~l~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~l 663 (912)
..+.+.++||+|+||.||+|+++ +++.||||+++.......+.|.+|++++++++|||||+++|+|.+.+..++
T Consensus 41 ~d~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~l 120 (329)
T 4aoj_A 41 RDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRFFGVCTEGRPLLM 120 (329)
T ss_dssp GGEEEEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEEE
T ss_pred HHEEEEEEECCCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEE
T ss_conf 99288779714778489989987866577896999999775797999999999999985899899969899998998999
Q ss_pred EEEECCCCCHHHHHCCCC------------CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCE
Q ss_conf 999368999988851478------------99988989899999999999889881499980643999998212589949
Q 002529 664 VYEYMHNGTLRDRLHGSV------------NQKPLDWLTRLQIAHDAAKGLEYLHTGCNPGIIHRDVKSSNILLDINMRA 731 (912)
Q Consensus 664 V~E~~~~gsL~~~l~~~~------------~~~~l~~~~~~~i~~qia~aL~yLHs~~~~~ivH~DIkp~NILl~~~~~i 731 (912)
|||||++|+|.++++... ....++|.+++.|+.|+|.||+|||+ ++|+||||||+|||+++++.+
T Consensus 121 V~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~---~~iiHRDLKp~NILl~~~~~~ 197 (329)
T 4aoj_A 121 VFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLAG---LHFVHRDLATRNCLVGQGLVV 197 (329)
T ss_dssp EEECCTTCBHHHHHHTSSCC-----------CCSCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEEETTTEE
T ss_pred EEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHC---CCEECCCCCHHHEEECCCCCE
T ss_conf 99827999399999860754100122112457889999999999999999999840---884226666764898899968
Q ss_pred EEEECCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH-CCCCCCCCCCCCHHHHHHHHH
Q ss_conf 994206753355566-520014567775448774489977922578999999999992-999998657322022899998
Q 002529 732 KVSDFGLSRQAEEDL-THISSVARGTVGYLDPEYYGNQQLTEKSDVYSFGVVLLELIS-GKKPVSVEDFGAELNIVHWAR 809 (912)
Q Consensus 732 kL~DFGla~~~~~~~-~~~~~~~~gt~~y~APE~l~~~~~s~~sDVwSlGvil~ellt-G~~P~~~~~~~~~~~~~~~~~ 809 (912)
||+|||+++...... ........||+.|||||++.+..++.++|||||||++|||+| |+.||......+ +...
T Consensus 198 Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~~sDvwS~Gvvl~Ellt~G~~Pf~~~~~~~---~~~~-- 272 (329)
T 4aoj_A 198 KIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQPWYQLSNTE---AIDC-- 272 (329)
T ss_dssp EECCCC----------------CCCCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSSCHHH---HHHH--
T ss_pred EECCCCCCEECCCCCCCEECCCCCCCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHH---HHHH--
T ss_conf 97666033365678753004764556566582654479999663001057899999828999999989999---9999--
Q ss_pred HHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 64304981001175346888988999999999862357999999999999998631210
Q 002529 810 SMIKKGDVISIVDPVLIGNVKIESIWRIAEVAIQCVEQRGFSRPKMQEIVLAIQDSIKI 868 (912)
Q Consensus 810 ~~i~~~~~~~~~d~~l~~~~~~~~~~~l~~li~~Cl~~~P~~RPs~~eIl~~L~~~~~~ 868 (912)
+..+... ..+...+..+.+++.+||+.+|++||+|.||++.|+.+...
T Consensus 273 --i~~g~~~---------~~p~~~~~~~~~li~~cl~~dP~~RPs~~ei~~~L~~l~~~ 320 (329)
T 4aoj_A 273 --ITQGREL---------ERPRACPPEVYAIMRGCWQREPQQRHSIKDVHARLQALAQA 320 (329)
T ss_dssp --HHHTCCC---------CCCTTCCHHHHHHHHHHCCSSTTTSCCHHHHHHHHHHHHHS
T ss_pred --HHCCCCC---------CCCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHC
T ss_conf --9808989---------98644639999999997475965792999999999987458
No 2
>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*
Probab=1.00 E-value=1 Score=398.81 Aligned_cols=261 Identities=28% Similarity=0.461 Sum_probs=216.0
Q ss_pred HHHHHHHCCCCCCCCEEEEEEEEC------CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCEEE
Q ss_conf 999864050384660899999965------99799999814765145677999999998337898523546984177289
Q 002529 589 EATNNFCKKIGKGSFGSVYYGKMK------DGKEVAVKIMADSCSHRTQQFVTEVALLSRIHHRNLVPLIGYCEEEHQRI 662 (912)
Q Consensus 589 ~~~~~~~~~LG~G~fG~Vy~~~~~------~g~~vAvK~l~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~ 662 (912)
...+.+.++||+|+||.||+|++. +++.||||+++.......+.|.+|++++++++|||||+++|+|.+++..+
T Consensus 12 r~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~ 91 (299)
T 4asz_A 12 RHNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVEGDPLI 91 (299)
T ss_dssp GGGEEEEEEEEC--CCCEEEEEECSCC----CEEEEEEEECSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEE
T ss_pred HHHEEEEEEEEECCCCEEEEEEECCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEE
T ss_conf 88929824982078829999998776667788799999967778589999999999998589988862879995699899
Q ss_pred EEEEECCCCCHHHHHCCCC----------CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCEE
Q ss_conf 9999368999988851478----------999889898999999999998898814999806439999982125899499
Q 002529 663 LVYEYMHNGTLRDRLHGSV----------NQKPLDWLTRLQIAHDAAKGLEYLHTGCNPGIIHRDVKSSNILLDINMRAK 732 (912)
Q Consensus 663 lV~E~~~~gsL~~~l~~~~----------~~~~l~~~~~~~i~~qia~aL~yLHs~~~~~ivH~DIkp~NILl~~~~~ik 732 (912)
+|||||++|+|.++++... ....++|..++.|+.|+|.||+|||+ ++|+||||||+|||+++++.+|
T Consensus 92 lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~---~~iiHRDlKp~NILl~~~~~~K 168 (299)
T 4asz_A 92 MVFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLAS---QHFVHRDLATRNCLVGENLLVK 168 (299)
T ss_dssp EEEECCTTCBHHHHHHHTSHHHHHC----CCCCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEECGGGCEE
T ss_pred EEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH---CCCCCCCCCHHHEEECCCCCEE
T ss_conf 9998589996899998608642111235777889999999999999999999975---9904676577638987998689
Q ss_pred EEECCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH-CCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 942067533555665-20014567775448774489977922578999999999992-9999986573220228999986
Q 002529 733 VSDFGLSRQAEEDLT-HISSVARGTVGYLDPEYYGNQQLTEKSDVYSFGVVLLELIS-GKKPVSVEDFGAELNIVHWARS 810 (912)
Q Consensus 733 L~DFGla~~~~~~~~-~~~~~~~gt~~y~APE~l~~~~~s~~sDVwSlGvil~ellt-G~~P~~~~~~~~~~~~~~~~~~ 810 (912)
|+|||+|+....... .......||+.|||||++.+..++.++|||||||++|||+| |+.||......+ +..
T Consensus 169 i~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~k~DVwS~Gvvl~Ellt~G~~Pf~~~~~~~---~~~---- 241 (299)
T 4asz_A 169 IGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLSNNE---VIE---- 241 (299)
T ss_dssp ECCCSCHHHHTGGGCEEETTTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHHH---HHH----
T ss_pred ECCCCCCEECCCCCCEEECCCEECCHHHCCHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHH---HHH----
T ss_conf 8873001006788741664751347010388987079997036677889999999808999999989999---999----
Q ss_pred HHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 4304981001175346888988999999999862357999999999999998631210
Q 002529 811 MIKKGDVISIVDPVLIGNVKIESIWRIAEVAIQCVEQRGFSRPKMQEIVLAIQDSIKI 868 (912)
Q Consensus 811 ~i~~~~~~~~~d~~l~~~~~~~~~~~l~~li~~Cl~~~P~~RPs~~eIl~~L~~~~~~ 868 (912)
.+..+... ..+...+..+.+++.+||+.+|++||+|+||++.|+++...
T Consensus 242 ~i~~~~~~---------~~p~~~~~~~~~li~~cl~~dP~~RPs~~~i~~~L~~~~~~ 290 (299)
T 4asz_A 242 CITQGRVL---------QRPRTCPQEVYELMLGCWQREPHMRKNIKGIHTLLQNLAKA 290 (299)
T ss_dssp HHHHTCCC---------CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred HHHCCCCC---------CCCCCCHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHC
T ss_conf 99808988---------99741439999999997687966892999999999877763
No 3
>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A
Probab=1.00 E-value=1 Score=398.52 Aligned_cols=264 Identities=24% Similarity=0.413 Sum_probs=215.1
Q ss_pred HHHHHHHHHHHCCCCCCCCEEEEEEEEC------CCCEEEEEECCCCCC-HHHHHHHHHHHHHHHCCCCCCCCEEEEEEC
Q ss_conf 4799999864050384660899999965------997999998147651-456779999999983378985235469841
Q 002529 585 PELEEATNNFCKKIGKGSFGSVYYGKMK------DGKEVAVKIMADSCS-HRTQQFVTEVALLSRIHHRNLVPLIGYCEE 657 (912)
Q Consensus 585 ~el~~~~~~~~~~LG~G~fG~Vy~~~~~------~g~~vAvK~l~~~~~-~~~~~~~~E~~il~~l~HpnIv~l~~~~~~ 657 (912)
.++...+++|.++||+|+||.||+|.+. +++.||||+++.... ...+.|.+|+.++++++|||||+++|+|.+
T Consensus 21 ~ei~~~~~~~~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~ 100 (308)
T 4gt4_A 21 KEISLSAVRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVVCLLGVVTK 100 (308)
T ss_dssp CBCCGGGEEEEEEEEECSSCEEEEEEEC-------CEEEEEEECCC-CCC-CHHHHHHHHHHHHHCCCTTBCCEEEEECS
T ss_pred CCCCHHHCEEEEEECCCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEE
T ss_conf 22878888586691358884899999857765888869999998801496899999999999985899898773649988
Q ss_pred CCEEEEEEEECCCCCHHHHHCCCC-------------CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCC
Q ss_conf 772899999368999988851478-------------9998898989999999999988988149998064399999821
Q 002529 658 EHQRILVYEYMHNGTLRDRLHGSV-------------NQKPLDWLTRLQIAHDAAKGLEYLHTGCNPGIIHRDVKSSNIL 724 (912)
Q Consensus 658 ~~~~~lV~E~~~~gsL~~~l~~~~-------------~~~~l~~~~~~~i~~qia~aL~yLHs~~~~~ivH~DIkp~NIL 724 (912)
.+..++|||||++|+|.++|+... ....++|..++.|+.|||+||+|||+ ++|+||||||+|||
T Consensus 101 ~~~~~lV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~---~~iiHRDLK~~NIL 177 (308)
T 4gt4_A 101 DQPLSMIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLSS---HHVVHKDLATRNVL 177 (308)
T ss_dssp SSSCEEEEECCSSCBHHHHHHTTCSSCCCC-----CCEECCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEE
T ss_pred CCEEEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH---CCCCCCCCCCCCEE
T ss_conf 998899998189994999998627654333322111124689999999999999999999986---89977873623068
Q ss_pred CCCCCCEEEEECCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH-CCCCCCCCCCCCHH
Q ss_conf 2589949994206753355566-520014567775448774489977922578999999999992-99999865732202
Q 002529 725 LDINMRAKVSDFGLSRQAEEDL-THISSVARGTVGYLDPEYYGNQQLTEKSDVYSFGVVLLELIS-GKKPVSVEDFGAEL 802 (912)
Q Consensus 725 l~~~~~ikL~DFGla~~~~~~~-~~~~~~~~gt~~y~APE~l~~~~~s~~sDVwSlGvil~ellt-G~~P~~~~~~~~~~ 802 (912)
+++++.+||+|||+++...... ........||+.|||||++.+..++.++|||||||++|||+| |+.||......
T Consensus 178 l~~~~~~Ki~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~~s~ksDVwSfGvvl~El~t~g~~Pf~~~~~~--- 254 (308)
T 4gt4_A 178 VYDKLNVKISDLGLFREVYAADYYKLLGNSLLPIRWMAPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYSNQ--- 254 (308)
T ss_dssp ECGGGCEEECCSCCBCGGGGGGCBCSSSSSCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTCCHH---
T ss_pred ECCCCCEEECCCCCCEECCCCCCEEEECCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHH---
T ss_conf 87999789887602023367774047345125776569899827999963000157999999996899999998999---
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 28999986430498100117534688898899999999986235799999999999999863121
Q 002529 803 NIVHWARSMIKKGDVISIVDPVLIGNVKIESIWRIAEVAIQCVEQRGFSRPKMQEIVLAIQDSIK 867 (912)
Q Consensus 803 ~~~~~~~~~i~~~~~~~~~d~~l~~~~~~~~~~~l~~li~~Cl~~~P~~RPs~~eIl~~L~~~~~ 867 (912)
.+.. .+..+.... .+.+++..+.+++.+||+.+|++||+|.||++.|+....
T Consensus 255 ~~~~----~i~~~~~~~---------~p~~~~~~~~~li~~C~~~dP~~RPs~~ei~~~L~a~~n 306 (308)
T 4gt4_A 255 DVVE----MIRNRQVLP---------CPDDCPAWVYALMIECWNEFPSRRPRFKDIHSRLRAWGN 306 (308)
T ss_dssp HHHH----HHHTTCCCC---------CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSCC
T ss_pred HHHH----HHHCCCCCC---------CCCCCHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHCCC
T ss_conf 9999----998199899---------962036999999999758796579299999999985318
No 4
>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*
Probab=1.00 E-value=1 Score=387.81 Aligned_cols=266 Identities=26% Similarity=0.419 Sum_probs=214.0
Q ss_pred HHHHHHHHHHCCCCCCCCEEEEEEEECC------CCEEEEEECCCCCC-HHHHHHHHHHHHHHHCC-CCCCCCEEEEEEC
Q ss_conf 7999998640503846608999999659------97999998147651-45677999999998337-8985235469841
Q 002529 586 ELEEATNNFCKKIGKGSFGSVYYGKMKD------GKEVAVKIMADSCS-HRTQQFVTEVALLSRIH-HRNLVPLIGYCEE 657 (912)
Q Consensus 586 el~~~~~~~~~~LG~G~fG~Vy~~~~~~------g~~vAvK~l~~~~~-~~~~~~~~E~~il~~l~-HpnIv~l~~~~~~ 657 (912)
|+....+++.+.||+|+||.||+|.+.. ++.||||+++.... ...+.|.+|++++.+++ |||||+++|+|..
T Consensus 60 Ei~~~~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~~~~~~~~~~E~~il~~l~hhpnIV~l~g~~~~ 139 (353)
T 4ase_A 60 EFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTK 139 (353)
T ss_dssp BCCGGGEEEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECC
T ss_pred EECHHHEEEEEEEECCCCEEEEEEEECCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEE
T ss_conf 70579959820982178959999998688854477599999976235868999999999999975799848778899994
Q ss_pred C-CEEEEEEEECCCCCHHHHHCCCC-------------CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCC
Q ss_conf 7-72899999368999988851478-------------999889898999999999998898814999806439999982
Q 002529 658 E-HQRILVYEYMHNGTLRDRLHGSV-------------NQKPLDWLTRLQIAHDAAKGLEYLHTGCNPGIIHRDVKSSNI 723 (912)
Q Consensus 658 ~-~~~~lV~E~~~~gsL~~~l~~~~-------------~~~~l~~~~~~~i~~qia~aL~yLHs~~~~~ivH~DIkp~NI 723 (912)
. ...++|||||++|+|.++|+... ....+++..++.++.|||.||+|||+ ++|+||||||+||
T Consensus 140 ~~~~~~iV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~yLH~---~~iiHRDLK~~NI 216 (353)
T 4ase_A 140 PGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLAS---RKCIHRDLAARNI 216 (353)
T ss_dssp TTSCCEEEEECCTTEEHHHHHHHTGGGBCCC-------CTTCBCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGE
T ss_pred CCCEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHH---CCEECCCCCCCCE
T ss_conf 6977999998389897999997435666543334101103568999999999999999876762---7843574672113
Q ss_pred CCCCCCCEEEEECCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH-CCCCCCCCCCCCH
Q ss_conf 125899499942067533555665-20014567775448774489977922578999999999992-9999986573220
Q 002529 724 LLDINMRAKVSDFGLSRQAEEDLT-HISSVARGTVGYLDPEYYGNQQLTEKSDVYSFGVVLLELIS-GKKPVSVEDFGAE 801 (912)
Q Consensus 724 Ll~~~~~ikL~DFGla~~~~~~~~-~~~~~~~gt~~y~APE~l~~~~~s~~sDVwSlGvil~ellt-G~~P~~~~~~~~~ 801 (912)
|+++++.+||+|||+|+....... .......||+.|||||++.+..++.++|||||||++|||+| |+.||........
T Consensus 217 Ll~~~~~vKi~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~y~~ksDVwS~Gv~l~El~t~G~~Pf~~~~~~~~ 296 (353)
T 4ase_A 217 LLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEE 296 (353)
T ss_dssp EECGGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCSHH
T ss_pred EECCCCCEEECCCHHHHHCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCCCCEEEHHHHHHHHHHCCCCCCCCCCHHHH
T ss_conf 05799978979654322245688720325401466656989994699997553740689999998189999999898999
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 22899998643049810011753468889889999999998623579999999999999986312100
Q 002529 802 LNIVHWARSMIKKGDVISIVDPVLIGNVKIESIWRIAEVAIQCVEQRGFSRPKMQEIVLAIQDSIKIE 869 (912)
Q Consensus 802 ~~~~~~~~~~i~~~~~~~~~d~~l~~~~~~~~~~~l~~li~~Cl~~~P~~RPs~~eIl~~L~~~~~~~ 869 (912)
+. ..+..+.... .+......+.+++.+||+.+|++|||+.||++.|++++...
T Consensus 297 --~~----~~i~~g~~~~---------~p~~~~~~~~~li~~c~~~dP~~RPt~~eil~~L~~llq~~ 349 (353)
T 4ase_A 297 --FC----RRLKEGTRMR---------APDYTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNLLQAN 349 (353)
T ss_dssp --HH----HHHHHTCCCC---------CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHT
T ss_pred --HH----HHHHCCCCCC---------CCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHH
T ss_conf --99----9997389888---------88657899999999976869667939999999999999875
No 5
>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=384.02 Aligned_cols=263 Identities=30% Similarity=0.512 Sum_probs=208.0
Q ss_pred HHHHHHHHHCCCCCCCCEEEEEEEECCCCEEEEEECCCC--CCHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCEEEEE
Q ss_conf 999998640503846608999999659979999981476--514567799999999833789852354698417728999
Q 002529 587 LEEATNNFCKKIGKGSFGSVYYGKMKDGKEVAVKIMADS--CSHRTQQFVTEVALLSRIHHRNLVPLIGYCEEEHQRILV 664 (912)
Q Consensus 587 l~~~~~~~~~~LG~G~fG~Vy~~~~~~g~~vAvK~l~~~--~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lV 664 (912)
+....+++.++||+|+||+||+|+++ ..||||+++.. .....+.|.+|++++++++|||||+++|++.+ +..++|
T Consensus 33 i~~~~l~l~~~iG~G~fG~Vy~~~~~--~~vAvK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~-~~~~iV 109 (307)
T 3omv_A 33 IEASEVMLSTRIGSGSFGTVYKGKWH--GDVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTK-DNLAIV 109 (307)
T ss_dssp CCTTSCCEEEECCCCSSSEEEEEESS--SEEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECS-SSCEEE
T ss_pred ECHHHEEEEEEEEECCCCEEEEEEEC--CCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEC-CEEEEE
T ss_conf 74799498449820888689999989--968999997268999999999999999985899887469999978-958999
Q ss_pred EEECCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCEEEEECCCCCCCCC
Q ss_conf 99368999988851478999889898999999999998898814999806439999982125899499942067533555
Q 002529 665 YEYMHNGTLRDRLHGSVNQKPLDWLTRLQIAHDAAKGLEYLHTGCNPGIIHRDVKSSNILLDINMRAKVSDFGLSRQAEE 744 (912)
Q Consensus 665 ~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~qia~aL~yLHs~~~~~ivH~DIkp~NILl~~~~~ikL~DFGla~~~~~ 744 (912)
||||++|+|.++++.. ...+++..++.|+.|+|.||+|||+ ++|+||||||+|||+++++.+||+|||+|+....
T Consensus 110 mEy~~gGsL~~~l~~~--~~~l~~~~~~~i~~qia~gL~yLH~---~~IiHRDlKp~NILl~~~~~~Ki~DFGla~~~~~ 184 (307)
T 3omv_A 110 TQWCEGSSLYKHLHVQ--ETKFQMFQLIDIARQTAQGMDYLHA---KNIIHRDMKSNNIFLHEGLTVKIGDFGLATVKSR 184 (307)
T ss_dssp EECCSSCBHHHHHHTS--CCCCCHHHHHHHHHHHHHHHHHHHH---TTCBCSCCCSSSEEEETTEEEEECCCSSCBC---
T ss_pred EECCCCCCHHHHHHHC--CCCCCHHHHHHHHHHHHHHHHHHHH---CCCCCCCCCHHHEEECCCCCEEEEECCCCEECCC
T ss_conf 9748998788987524--8999999999999999999999977---9952785578997888999089944157542466
Q ss_pred CC-CCCCCCCCCCCCCCCCCCCCC---CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCC
Q ss_conf 66-520014567775448774489---97792257899999999999299999865732202289999864304981001
Q 002529 745 DL-THISSVARGTVGYLDPEYYGN---QQLTEKSDVYSFGVVLLELISGKKPVSVEDFGAELNIVHWARSMIKKGDVISI 820 (912)
Q Consensus 745 ~~-~~~~~~~~gt~~y~APE~l~~---~~~s~~sDVwSlGvil~elltG~~P~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 820 (912)
.. ........||+.|||||++.+ ..++.++|||||||++|||+||+.||....... .+.. .+..+..
T Consensus 185 ~~~~~~~~~~~GT~~ymAPE~l~~~~~~~y~~ksDVwS~Gvvl~Elltg~~Pf~~~~~~~--~~~~----~~~~~~~--- 255 (307)
T 3omv_A 185 WSGSQQVEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHINNRD--QIIF----MVGRGYA--- 255 (307)
T ss_dssp ---------CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCHH--HHHH----HHHTTCC---
T ss_pred CCCCEEECCCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHH--HHHH----HHHCCCC---
T ss_conf 776403156446877249878614689987868775728999999997889989999699--9999----9965888---
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 175346888988999999999862357999999999999998631210
Q 002529 821 VDPVLIGNVKIESIWRIAEVAIQCVEQRGFSRPKMQEIVLAIQDSIKI 868 (912)
Q Consensus 821 ~d~~l~~~~~~~~~~~l~~li~~Cl~~~P~~RPs~~eIl~~L~~~~~~ 868 (912)
.|.+ ...+.+.+..+.+++.+||+.+|++||+|.||++.|+.+.+.
T Consensus 256 -~p~~-~~~~~~~~~~l~~li~~cl~~dP~~RPs~~ei~~~Le~l~~~ 301 (307)
T 3omv_A 256 -SPDL-SKLYKNCPKAMKRLVADCVKKVKEERPLFPQILSSIELLQHS 301 (307)
T ss_dssp -CCCS-TTSCTTSCHHHHHHHHHHTCSSSTTSCCHHHHHHHHHHHHTT
T ss_pred -CCCC-CCCCCCCHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHCC
T ss_conf -8872-003544569999999997577976890989999999997450
No 6
>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*
Probab=1.00 E-value=1 Score=382.82 Aligned_cols=249 Identities=26% Similarity=0.367 Sum_probs=206.6
Q ss_pred HHHHHCCCCCCCCEEEEEEEEC-CCCEEEEEECCCCC--CHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCEEEEEEEE
Q ss_conf 9864050384660899999965-99799999814765--14567799999999833789852354698417728999993
Q 002529 591 TNNFCKKIGKGSFGSVYYGKMK-DGKEVAVKIMADSC--SHRTQQFVTEVALLSRIHHRNLVPLIGYCEEEHQRILVYEY 667 (912)
Q Consensus 591 ~~~~~~~LG~G~fG~Vy~~~~~-~g~~vAvK~l~~~~--~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lV~E~ 667 (912)
.|++.+.||+|+||.||+|+.+ +++.||||++.... ....+.+.+|++++++++|||||++++++.+++..++||||
T Consensus 25 ~Y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~yiVmEy 104 (350)
T 4b9d_A 25 KYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHPNIVQYRESFEENGSLYIVMDY 104 (350)
T ss_dssp CEEEEEEC------CEEEEEETTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred CEEEEEEEECCCCEEEEEEEECCCCCEEEEEEEEHHHCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEEC
T ss_conf 55884797027793999999889998999999865878979999999999999877998989199999989999999948
Q ss_pred CCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCEEEEECCCCCCCCCCCC
Q ss_conf 68999988851478999889898999999999998898814999806439999982125899499942067533555665
Q 002529 668 MHNGTLRDRLHGSVNQKPLDWLTRLQIAHDAAKGLEYLHTGCNPGIIHRDVKSSNILLDINMRAKVSDFGLSRQAEEDLT 747 (912)
Q Consensus 668 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~qia~aL~yLHs~~~~~ivH~DIkp~NILl~~~~~ikL~DFGla~~~~~~~~ 747 (912)
|+||+|.+++... ....+++..++.|+.||+.||+|||+ ++|+||||||+|||++.++.+||+|||+|+.......
T Consensus 105 ~~gg~L~~~i~~~-~~~~~~e~~~~~~~~qi~~aL~ylH~---~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~~ 180 (350)
T 4b9d_A 105 CEGGDLFKRINAQ-KGVLFQEDQILDWFVQICLALKHVHD---RKILHRDIKSQNIFLTKDGTVQLGDFGIARVLNSTVE 180 (350)
T ss_dssp CTTCBHHHHHHHT-TTCCCCHHHHHHHHHHHHHHHHHHHH---TTCEETTCCGGGEEECTTCCEEECSTTEESCCCHHHH
T ss_pred CCCCCHHHHHHHC-CCCCCCHHHHHHHHHHHHHHHHHHHH---CCEEECCCCHHHEEECCCCCEEECCCCCCEEECCCCC
T ss_conf 8998399999973-89999789999999999999999998---9915135978997987899989764652144068854
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 20014567775448774489977922578999999999992999998657322022899998643049810011753468
Q 002529 748 HISSVARGTVGYLDPEYYGNQQLTEKSDVYSFGVVLLELISGKKPVSVEDFGAELNIVHWARSMIKKGDVISIVDPVLIG 827 (912)
Q Consensus 748 ~~~~~~~gt~~y~APE~l~~~~~s~~sDVwSlGvil~elltG~~P~~~~~~~~~~~~~~~~~~~i~~~~~~~~~d~~l~~ 827 (912)
......||+.|||||++.+..|+.++||||+||++|||++|+.||...+..+. ... +..+... .+..
T Consensus 181 -~~~~~~GT~~YmAPE~l~~~~y~~~~DiwSlGvilyemltG~~PF~~~~~~~~------~~~-i~~~~~~-----~~~~ 247 (350)
T 4b9d_A 181 -LARACIGTPYYLSPEICENKPYNNKSDIWALGCVLYELCTLKHAFEAGSMKNL------VLK-IISGSFP-----PVSL 247 (350)
T ss_dssp -HHHHHHSCCTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHH------HHH-HHHTCCC-----CCCT
T ss_pred -CCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHH------HHH-HHCCCCC-----CCCC
T ss_conf -10145788360399998799989599999999999999978799899699999------999-9808999-----9975
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHH
Q ss_conf 889889999999998623579999999999999
Q 002529 828 NVKIESIWRIAEVAIQCVEQRGFSRPKMQEIVL 860 (912)
Q Consensus 828 ~~~~~~~~~l~~li~~Cl~~~P~~RPs~~eIl~ 860 (912)
.. ...+.+++.+||+.+|++||++.|+++
T Consensus 248 ~~----s~~~~~li~~~L~~dP~~R~s~~e~l~ 276 (350)
T 4b9d_A 248 HY----SYDLRSLVSQLFKRNPRDRPSVNSILE 276 (350)
T ss_dssp TS----CHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred CC----CHHHHHHHHHHCCCCHHHCCCHHHHHC
T ss_conf 57----999999999985589667908999963
No 7
>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}
Probab=1.00 E-value=1 Score=381.14 Aligned_cols=248 Identities=24% Similarity=0.343 Sum_probs=206.1
Q ss_pred HHHHHCCCCCCCCEEEEEEEEC-CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCEEEEEEEECC
Q ss_conf 9864050384660899999965-997999998147651456779999999983378985235469841772899999368
Q 002529 591 TNNFCKKIGKGSFGSVYYGKMK-DGKEVAVKIMADSCSHRTQQFVTEVALLSRIHHRNLVPLIGYCEEEHQRILVYEYMH 669 (912)
Q Consensus 591 ~~~~~~~LG~G~fG~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lV~E~~~ 669 (912)
.|++.++||+|+||.||+|+.+ +|+.||||++........+.+.+|+.+|+.++|||||++++++.+.+..|+|||||+
T Consensus 152 ~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~iVmEy~~ 231 (423)
T 4fie_A 152 YLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFLE 231 (423)
T ss_dssp TEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESTTCSSGGGHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECCT
T ss_pred HCEEEEEECCCCCCEEEEEEECCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEECCC
T ss_conf 43861696248184899999999998999999862554689999999999985799898716899998999999996989
Q ss_pred CCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCC
Q ss_conf 99998885147899988989899999999999889881499980643999998212589949994206753355566520
Q 002529 670 NGTLRDRLHGSVNQKPLDWLTRLQIAHDAAKGLEYLHTGCNPGIIHRDVKSSNILLDINMRAKVSDFGLSRQAEEDLTHI 749 (912)
Q Consensus 670 ~gsL~~~l~~~~~~~~l~~~~~~~i~~qia~aL~yLHs~~~~~ivH~DIkp~NILl~~~~~ikL~DFGla~~~~~~~~~~ 749 (912)
||+|.+++.. ..+++..+..++.||+.||+|||+ ++|+||||||+|||++.++.+||+|||+|+........
T Consensus 232 gG~L~~~i~~----~~l~e~~~~~~~~qil~aL~ylH~---~~IiHRDiKp~NILl~~~g~vKl~DFGla~~~~~~~~~- 303 (423)
T 4fie_A 232 GGALTDIVTH----TRMNEEQIAAVCLAVLQALSVLHA---QGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPR- 303 (423)
T ss_dssp TEEHHHHHHH----SCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSTTTEEECTTCCEEECCCTTCEECCSSCCC-
T ss_pred CCCHHHHHHC----CCCCHHHHHHHHHHHHHHHHHHHH---CCEECCCCCHHHEEECCCCCEEEECCCCCEECCCCCCC-
T ss_conf 9828988761----698999999999999999999998---89044657877789858999898037265477788764-
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 01456777544877448997792257899999999999299999865732202289999864304981001175346888
Q 002529 750 SSVARGTVGYLDPEYYGNQQLTEKSDVYSFGVVLLELISGKKPVSVEDFGAELNIVHWARSMIKKGDVISIVDPVLIGNV 829 (912)
Q Consensus 750 ~~~~~gt~~y~APE~l~~~~~s~~sDVwSlGvil~elltG~~P~~~~~~~~~~~~~~~~~~~i~~~~~~~~~d~~l~~~~ 829 (912)
.....||+.|||||++.+..|+.++||||+||++|||++|+.||......+.. . .+..+..... . .
T Consensus 304 ~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~~~---~----~i~~~~~~~~-----~--~ 369 (423)
T 4fie_A 304 RKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAM---K----MIRDNLPPRL-----K--N 369 (423)
T ss_dssp BCCCEECTTTCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHH---H----HHHHSCCCCC-----S--C
T ss_pred CCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHH---H----HHHCCCCCCC-----C--C
T ss_conf 34666474727999977999996899999999999999787998986999999---9----9972799887-----6--5
Q ss_pred CHHHHHHHHHHHHHCCCCCCCCCCCHHHHHH
Q ss_conf 9889999999998623579999999999999
Q 002529 830 KIESIWRIAEVAIQCVEQRGFSRPKMQEIVL 860 (912)
Q Consensus 830 ~~~~~~~l~~li~~Cl~~~P~~RPs~~eIl~ 860 (912)
.......+.+++.+||+.||++||++.|+++
T Consensus 370 ~~~~s~~~~dli~~~L~~dP~~R~ta~ell~ 400 (423)
T 4fie_A 370 LHKVSPSLKGFLDRLLVRDPAQRATAAELLK 400 (423)
T ss_dssp TTSSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred CCCCCHHHHHHHHHHCCCCHHHCCCHHHHHC
T ss_conf 0129999999999986789568909999960
No 8
>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*
Probab=1.00 E-value=1 Score=380.44 Aligned_cols=248 Identities=24% Similarity=0.345 Sum_probs=205.9
Q ss_pred HHHHHCCCCCCCCEEEEEEEEC-CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCEEEEEEEECC
Q ss_conf 9864050384660899999965-997999998147651456779999999983378985235469841772899999368
Q 002529 591 TNNFCKKIGKGSFGSVYYGKMK-DGKEVAVKIMADSCSHRTQQFVTEVALLSRIHHRNLVPLIGYCEEEHQRILVYEYMH 669 (912)
Q Consensus 591 ~~~~~~~LG~G~fG~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lV~E~~~ 669 (912)
.|++.++||+|+||.||+|+.+ +|+.||||++........+.+.+|+++|+.++|||||++++++.+++..++|||||+
T Consensus 75 ~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~ivmEy~~ 154 (346)
T 4fih_A 75 YLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFLE 154 (346)
T ss_dssp TEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCSSGGGGHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEECCCT
T ss_pred HCEEEEEEECCCCEEEEEEEECCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEECCC
T ss_conf 53870796027282999999989998999999852765689999999999986799899919999998999999996989
Q ss_pred CCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCC
Q ss_conf 99998885147899988989899999999999889881499980643999998212589949994206753355566520
Q 002529 670 NGTLRDRLHGSVNQKPLDWLTRLQIAHDAAKGLEYLHTGCNPGIIHRDVKSSNILLDINMRAKVSDFGLSRQAEEDLTHI 749 (912)
Q Consensus 670 ~gsL~~~l~~~~~~~~l~~~~~~~i~~qia~aL~yLHs~~~~~ivH~DIkp~NILl~~~~~ikL~DFGla~~~~~~~~~~ 749 (912)
+|+|.+++.. ..+++..+..++.||+.||+|||+ ++|+||||||+|||++.++.+||+|||+|+........
T Consensus 155 gg~L~~~l~~----~~l~e~~~~~~~~qi~~aL~ylH~---~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~~~- 226 (346)
T 4fih_A 155 GGALTDIVTH----TRMNEEQIAAVCLAVLQALSVLHA---QGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPR- 226 (346)
T ss_dssp TEEHHHHHHH----SCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTCCEEECCCTTCEECCSSSCC-
T ss_pred CCCHHHHHHC----CCCCHHHHHHHHHHHHHHHHHHHH---CCCCCCCCCHHHEEECCCCCEEEECCCCCEECCCCCCC-
T ss_conf 9808999871----898999999999999999999998---88355627889978879998899027575366788775-
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 01456777544877448997792257899999999999299999865732202289999864304981001175346888
Q 002529 750 SSVARGTVGYLDPEYYGNQQLTEKSDVYSFGVVLLELISGKKPVSVEDFGAELNIVHWARSMIKKGDVISIVDPVLIGNV 829 (912)
Q Consensus 750 ~~~~~gt~~y~APE~l~~~~~s~~sDVwSlGvil~elltG~~P~~~~~~~~~~~~~~~~~~~i~~~~~~~~~d~~l~~~~ 829 (912)
.....||+.|||||++.+..|+.++||||+||++|||++|+.||...+..+. .. .+..+..... ..
T Consensus 227 ~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~~---~~----~i~~~~~~~~-------~~ 292 (346)
T 4fih_A 227 RKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKA---MK----MIRDNLPPRL-------KN 292 (346)
T ss_dssp BCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHH---HH----HHHHSSCCCC-------SC
T ss_pred CCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHH---HH----HHHCCCCCCC-------CC
T ss_conf 3465627582799997799999689999999999999978799898599999---99----9971799988-------75
Q ss_pred CHHHHHHHHHHHHHCCCCCCCCCCCHHHHHH
Q ss_conf 9889999999998623579999999999999
Q 002529 830 KIESIWRIAEVAIQCVEQRGFSRPKMQEIVL 860 (912)
Q Consensus 830 ~~~~~~~l~~li~~Cl~~~P~~RPs~~eIl~ 860 (912)
.......+.+++.+||+.||++||++.|+++
T Consensus 293 ~~~~s~~~~dli~~~L~~dP~~R~ta~e~l~ 323 (346)
T 4fih_A 293 LHKVSPSLKGFLDRLLVRDPAQRATAAELLK 323 (346)
T ss_dssp GGGSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred CCCCCHHHHHHHHHHCCCCHHHCCCHHHHHC
T ss_conf 0229999999999986799568909999960
No 9
>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*
Probab=1.00 E-value=1 Score=379.93 Aligned_cols=263 Identities=24% Similarity=0.260 Sum_probs=212.7
Q ss_pred HHHHCCCCCCCCEEEEEEEEC-CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCEEEEEEEECCC
Q ss_conf 864050384660899999965-9979999981476514567799999999833789852354698417728999993689
Q 002529 592 NNFCKKIGKGSFGSVYYGKMK-DGKEVAVKIMADSCSHRTQQFVTEVALLSRIHHRNLVPLIGYCEEEHQRILVYEYMHN 670 (912)
Q Consensus 592 ~~~~~~LG~G~fG~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lV~E~~~~ 670 (912)
+++.++||+|+||.||+|+++ +|+.||||+++... ...+|+.+++.++|||||++++++.+.+..++|||||+|
T Consensus 60 ~~~~~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~~-----~~~~E~~il~~l~HpnIV~l~~~~~~~~~~~ivmEy~~g 134 (336)
T 4g3f_A 60 MTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEV-----FRVEELVACAGLSSPRIVPLYGAVREGPWVNIFMELLEG 134 (336)
T ss_dssp EEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTT-----CCTHHHHTTTTCCCTTBCCEEEEEEETTEEEEEECCCTT
T ss_pred EEECCEECCCCCEEEEEEEECCCCCEEEEEEECHHH-----HHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEECCCC
T ss_conf 176868513878099999988999899999978888-----699999999857998999399999989999999966599
Q ss_pred CCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCC-CEEEEECCCCCCCCCCCCC-
Q ss_conf 99988851478999889898999999999998898814999806439999982125899-4999420675335556652-
Q 002529 671 GTLRDRLHGSVNQKPLDWLTRLQIAHDAAKGLEYLHTGCNPGIIHRDVKSSNILLDINM-RAKVSDFGLSRQAEEDLTH- 748 (912)
Q Consensus 671 gsL~~~l~~~~~~~~l~~~~~~~i~~qia~aL~yLHs~~~~~ivH~DIkp~NILl~~~~-~ikL~DFGla~~~~~~~~~- 748 (912)
|+|.++++. ...+++..+..++.|++.||+|||+ ++|+||||||+|||++.++ .+||+|||+|+........
T Consensus 135 g~L~~~l~~---~~~l~e~~~~~~~~qi~~aL~ylH~---~~IiHRDlKp~NILl~~~g~~vKl~DFGla~~~~~~~~~~ 208 (336)
T 4g3f_A 135 GSLGQLIKQ---MGCLPEDRALYYLGQALEGLEYLHT---RRILHGDVKADNVLLSSDGSRAALCDFGHALCLQPDGLGK 208 (336)
T ss_dssp CBHHHHHHH---HSSCCHHHHHHHHHHHHHHHHHHHT---TTEECSCCCGGGEEECTTSCCEEECCCTTCEEC-------
T ss_pred CCHHHHHHH---CCCCCHHHHHHHHHHHHHHHHHHHH---CCCEECCCCHHHEEEECCCCEEEEEECCCCEECCCCCCCC
T ss_conf 869999987---6999999999999999999999998---8904261677887995899979996278776856787654
Q ss_pred ---CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf ---00145677754487744899779225789999999999929999986573220228999986430498100117534
Q 002529 749 ---ISSVARGTVGYLDPEYYGNQQLTEKSDVYSFGVVLLELISGKKPVSVEDFGAELNIVHWARSMIKKGDVISIVDPVL 825 (912)
Q Consensus 749 ---~~~~~~gt~~y~APE~l~~~~~s~~sDVwSlGvil~elltG~~P~~~~~~~~~~~~~~~~~~~i~~~~~~~~~d~~l 825 (912)
......||+.|||||++.+..++.++||||+||++|||++|+.||........... + ........
T Consensus 209 ~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~Pf~~~~~~~~~~~---i---~~~~~~~~------ 276 (336)
T 4g3f_A 209 SLLTGDYIPGTETHMAPEVVMGKPCDAKVDIWSSCCMMLHMLNGCHPWTQYFRGPLCLK---I---ASEPPPIR------ 276 (336)
T ss_dssp -----CCCCCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSTTTCCSCCHHH---H---HHSCCGGG------
T ss_pred CEECCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH---H---HCCCCCCH------
T ss_conf 02217854558020089998899989089999999999999978699899899999999---9---80899800------
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 688898899999999986235799999999999999863121002899865568
Q 002529 826 IGNVKIESIWRIAEVAIQCVEQRGFSRPKMQEIVLAIQDSIKIEKGGDQKFSSS 879 (912)
Q Consensus 826 ~~~~~~~~~~~l~~li~~Cl~~~P~~RPs~~eIl~~L~~~~~~~~~~~~~~~~~ 879 (912)
..+......+.+++.+||+.+|++|||+.|+++.|.........-..+|-..
T Consensus 277 --~~~~~~s~~~~~li~~~L~~dP~~R~sa~el~~~l~~~l~~~~~l~hPw~~~ 328 (336)
T 4g3f_A 277 --EIPPSCAPLTAQAIQEGLRKEPVHRASAMELRRKVGKALQEVGGLKSPWKGE 328 (336)
T ss_dssp --GSCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHTTSSCSCSSSS
T ss_pred --HCCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf --2586679999999999762897689599999999999975443216987677
No 10
>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...
Probab=1.00 E-value=1 Score=372.11 Aligned_cols=246 Identities=24% Similarity=0.371 Sum_probs=205.0
Q ss_pred HHHHHCCCCCCCCEEEEEEEEC-CCCEEEEEECCCCC---CHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCEEEEEEE
Q ss_conf 9864050384660899999965-99799999814765---1456779999999983378985235469841772899999
Q 002529 591 TNNFCKKIGKGSFGSVYYGKMK-DGKEVAVKIMADSC---SHRTQQFVTEVALLSRIHHRNLVPLIGYCEEEHQRILVYE 666 (912)
Q Consensus 591 ~~~~~~~LG~G~fG~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lV~E 666 (912)
.|++.+.||+|+||+||+|+.+ +++.||+|++.+.. ....+.+.+|++++++++|||||++++++.+++..++|||
T Consensus 33 dy~i~~~lG~G~fg~V~~a~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~yivmE 112 (311)
T 4aw0_A 33 DFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGLS 112 (311)
T ss_dssp GEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEC
T ss_pred CCEEEEEEECCCCEEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCEEEEEEE
T ss_conf 36898898316484999999999998999999888887797899999999999986799898919999973898999996
Q ss_pred ECCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCEEEEECCCCCCCCCCC
Q ss_conf 36899998885147899988989899999999999889881499980643999998212589949994206753355566
Q 002529 667 YMHNGTLRDRLHGSVNQKPLDWLTRLQIAHDAAKGLEYLHTGCNPGIIHRDVKSSNILLDINMRAKVSDFGLSRQAEEDL 746 (912)
Q Consensus 667 ~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~qia~aL~yLHs~~~~~ivH~DIkp~NILl~~~~~ikL~DFGla~~~~~~~ 746 (912)
|++||+|.+++.. .+.+++..+..++.||+.||+|||+ ++|+||||||+|||++.++.+||+|||+|+......
T Consensus 113 y~~gG~L~~~i~~---~~~l~e~~~~~~~~qi~~al~ylH~---~~IiHRDlKPeNILl~~~g~vKl~DFGla~~~~~~~ 186 (311)
T 4aw0_A 113 YAKNGELLKYIRK---IGSFDETCTRFYTAEIVSALEYLHG---KGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPES 186 (311)
T ss_dssp CCTTEEHHHHHHH---HSSCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECTTSCEEECCCTTCEECCTTT
T ss_pred CCCCCCHHHHHHH---CCCCCHHHHHHHHHHHHHHHHHHHH---CCCCCCCCCHHHEEECCCCCEEEEECCCCEECCCCC
T ss_conf 4899899999987---4999999999999999999999998---878268787899698589888998768750257787
Q ss_pred -CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf -5200145677754487744899779225789999999999929999986573220228999986430498100117534
Q 002529 747 -THISSVARGTVGYLDPEYYGNQQLTEKSDVYSFGVVLLELISGKKPVSVEDFGAELNIVHWARSMIKKGDVISIVDPVL 825 (912)
Q Consensus 747 -~~~~~~~~gt~~y~APE~l~~~~~s~~sDVwSlGvil~elltG~~P~~~~~~~~~~~~~~~~~~~i~~~~~~~~~d~~l 825 (912)
........||+.|||||++.+..|+.++||||+||++|||++|+.||...+..+. .. .+..+.. .+
T Consensus 187 ~~~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~~---~~----~i~~~~~------~~ 253 (311)
T 4aw0_A 187 KQARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEGLI---FA----KIIKLEY------DF 253 (311)
T ss_dssp TCCCBCCCCSCGGGCCHHHHHHSCBCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHH---HH----HHHHTCC------CC
T ss_pred CCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHH---HH----HHHCCCC------CC
T ss_conf 76543675568030799897689999689899899999999749899899799999---99----9971999------99
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 6888988999999999862357999999999999
Q 002529 826 IGNVKIESIWRIAEVAIQCVEQRGFSRPKMQEIV 859 (912)
Q Consensus 826 ~~~~~~~~~~~l~~li~~Cl~~~P~~RPs~~eIl 859 (912)
.... ...+.+++.+||+.||++||+++|+.
T Consensus 254 p~~~----s~~~~dli~~lL~~dp~~R~t~~e~~ 283 (311)
T 4aw0_A 254 PEKF----FPKARDLVEKLLVLDATKRLGCEEME 283 (311)
T ss_dssp CTTC----CHHHHHHHHHHSCSSGGGSTTSGGGT
T ss_pred CCCC----CHHHHHHHHHHCCCCHHHCCCHHHHC
T ss_conf 9656----99999999997628975780967975
Done!