BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002530
(912 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4ELL|A Chain A, Structure Of The Inactive Retinoblastoma Protein Pocket
Domain
pdb|4ELL|B Chain B, Structure Of The Inactive Retinoblastoma Protein Pocket
Domain
Length = 411
Score = 154 bits (388), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 122/461 (26%), Positives = 215/461 (46%), Gaps = 92/461 (19%)
Query: 314 TAKWLRTVICPLPSKPSAELERFLKSCDKDVTTDVMRR----AHIILEAIFPSSGLGERC 369
T + L ++ +PS L + +C + +++R +I E + +G+ C
Sbjct: 5 TIQQLMMILNSASDQPSENLISYFNNCTVNPKESILKRVKDIGYIFKEKF--AKAVGQGC 62
Query: 370 V-TGSLQGANLMDNIWAEQRRLEALKLYYRVLEAMCTAEAQVLHAKNLTSLLTNERFHRC 428
V GS QR ++LYYRV+E+M +E + L +N + LL + FH
Sbjct: 63 VEIGS-------------QRYKLGVRLYYRVMESMLKSEEERLSIQNFSKLLNDNIFHMS 109
Query: 429 MLACSAELVLATHKTVT---------MLFPAVLERTGITAFDLSKVIESFIRHEESLPRE 479
+LAC+ E+V+AT+ T + FP +L + AFD KVIESFI+ E +L RE
Sbjct: 110 LLACALEVVMATYSRSTSQNLDSGTDLSFPWILNVLNLKAFDFYKVIESFIKAEGNLTRE 169
Query: 480 LRRHLNSLEERLLESMVWEKGSSMYNSLTVARPVLSAEINRLGLLADPMPSLDAIATHIN 539
+ +HL E R++ES W S +++ + ++ +R G P L++ A +N
Sbjct: 170 MIKHLERCEHRIMESFAWLSDSPLFDLIKQSK-------DREG----PTDHLES-ACPLN 217
Query: 540 FSSGGLSPVHSLHKHETSPGQNGDIRSPKRPCTDYRSVLVERNNFTSPVKDRXXXXXXXX 599
P+ + H + +R+PK+ + R N T+ + +
Sbjct: 218 L------PLQN--NHTAADMYLEPVRAPKKKGS------TTRVNSTANAETQAT------ 257
Query: 600 XXXXXXXXQSAFASPTRPNPGGGGETCAETGINIFFCKINKLAAVRINAMVERLQLSQ-- 657
SAF + +P T +++F+ K+ +LA +R+N + ERL LS+
Sbjct: 258 ---------SAFQT-QKP--------LKSTSLSLFYKKVYRLAYLRLNTLCERL-LSEHP 298
Query: 658 QIRESVYCLFQQILNQRTSLFFNRHIDQIILCCFYGVAKISQLNLTFREIIYNYRKQPQC 717
++ ++ LFQ L L +RH+DQI++C YG+ K+ ++L F+ I+ Y+ P
Sbjct: 299 ELEHIIWTLFQHTLQNEYELMRDRHLDQIMMCSMYGICKVKNIDLKFKIIVTAYKDLPHA 358
Query: 718 KPQVFRSVFVDWASARQSGRSEQDHVDIITFYNKIFVPAVK 758
+ F+ V + E+++ II FYN +F+ +K
Sbjct: 359 VQETFKRVLI----------KEEEYDSIIVFYNSVFMQRLK 389
>pdb|4ELJ|A Chain A, Crystal Structure Of The Inactive Retinoblastoma Protein
Phosphorylated At T373
Length = 656
Score = 110 bits (276), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 92/354 (25%), Positives = 154/354 (43%), Gaps = 69/354 (19%)
Query: 171 KTNTLIADILKKKPCEASECKSENLENIDTDGLIYFENLMXXXXXXXXXNI--LEKDYDN 228
+ +T I ++L C+ EC + + N+ I F N + + L K Y+
Sbjct: 196 ENDTRIIEVL----CKEHECNIDEVANVAFKNFIPFMNSLGLVTSNGLPEVENLSKRYEE 251
Query: 229 ATRNKGELDERVFINEDDXXXXXXXXXXXAVNITGAKRKFDSLASPVKT----ITSPLSP 284
+LD R+F++ D T + F++ +P K+ + + P
Sbjct: 252 IYLKNKDLDARLFLDHDKTLQ------------TDSIDSFETQRTPRKSNLDEEVNVIPP 299
Query: 285 HRSSASHPNGIAGGATSKMVVTPVSTAMTTAKWLRTVICPLPSKPSAELERFLKSCDKDV 344
H PV T M T + L ++ +PS L + +C +
Sbjct: 300 H--------------------XPVRTVMNTIQQLMMILNSASDQPSENLISYFNNCTVNP 339
Query: 345 TTDVMRRAHIILEAIFP---SSGLGERCV-TGSLQGANLMDNIWAEQRRLEALKLYYRVL 400
+++R I IF + +G+ CV GS QR ++LYYRV+
Sbjct: 340 KESILKRVKDI-GYIFKEKFAKAVGQGCVEIGS-------------QRYKLGVRLYYRVM 385
Query: 401 EAMCTAEAQVLHAKNLTSLLTNERFHRCMLACSAELVLATHKTVT---------MLFPAV 451
E+M +E + L +N + LL + FH +LAC+ E+V+AT+ T + FP +
Sbjct: 386 ESMLKSEEERLSIQNFSKLLNDNIFHMSLLACALEVVMATYSRSTSQNLDSGTDLSFPWI 445
Query: 452 LERTGITAFDLSKVIESFIRHEESLPRELRRHLNSLEERLLESMVWEKGSSMYN 505
L + AFD KVIESFI+ E +L RE+ +HL E R++ES+ W S +++
Sbjct: 446 LNVLNLKAFDFYKVIESFIKAEGNLTREMIKHLERCEHRIMESLAWLSDSPLFD 499
Score = 84.0 bits (206), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 75/132 (56%), Gaps = 13/132 (9%)
Query: 629 TGINIFFCKINKLAAVRINAMVERLQLSQ--QIRESVYCLFQQILNQRTSLFFNRHIDQI 686
T +++F+ K+ +LA +R+N + ERL LS+ ++ ++ LFQ L L +RH+DQI
Sbjct: 514 TSLSLFYKKVYRLAYLRLNTLCERL-LSEHPELEHIIWTLFQHTLQNEYELMRDRHLDQI 572
Query: 687 ILCCFYGVAKISQLNLTFREIIYNYRKQPQCKPQVFRSVFVDWASARQSGRSEQDHVDII 746
++C YG+ K+ ++L F+ I+ Y+ P + F+ V + E+++ II
Sbjct: 573 MMCSMYGICKVKNIDLKFKIIVTAYKDLPHAVQETFKRVLI----------KEEEYDSII 622
Query: 747 TFYNKIFVPAVK 758
FYN +F+ +K
Sbjct: 623 VFYNSVFMQRLK 634
>pdb|1GUX|A Chain A, Rb Pocket Bound To E7 Lxcxe Motif
pdb|1O9K|A Chain A, Crystal Structure Of The Retinoblastoma Tumour Suppressor
Protein Bound To E2f Peptide
pdb|1O9K|C Chain C, Crystal Structure Of The Retinoblastoma Tumour Suppressor
Protein Bound To E2f Peptide
pdb|1O9K|E Chain E, Crystal Structure Of The Retinoblastoma Tumour Suppressor
Protein Bound To E2f Peptide
pdb|1O9K|G Chain G, Crystal Structure Of The Retinoblastoma Tumour Suppressor
Protein Bound To E2f Peptide
Length = 218
Score = 110 bits (275), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 69/213 (32%), Positives = 109/213 (51%), Gaps = 27/213 (12%)
Query: 306 TPVSTAMTTAKWLRTVICPLPSKPSAELERFLKSCDKDVTTDVMRRAHIILEAIFP---S 362
TPV T M T + L ++ +PS L + +C + +++R I IF +
Sbjct: 2 TPVRTVMNTIQQLMMILNSASDQPSENLISYFNNCTVNPKESILKRVKDI-GYIFKEKFA 60
Query: 363 SGLGERCV-TGSLQGANLMDNIWAEQRRLEALKLYYRVLEAMCTAEAQVLHAKNLTSLLT 421
+G+ CV GS QR ++LYYRV+E+M +E + L +N + LL
Sbjct: 61 KAVGQGCVEIGS-------------QRYKLGVRLYYRVMESMLKSEEERLSIQNFSKLLN 107
Query: 422 NERFHRCMLACSAELVLATHKTVT---------MLFPAVLERTGITAFDLSKVIESFIRH 472
+ FH +LAC+ E+V+AT+ T + FP +L + AFD KVIESFI+
Sbjct: 108 DNIFHMSLLACALEVVMATYSRSTSQNLDSGTDLSFPWILNVLNLKAFDFYKVIESFIKA 167
Query: 473 EESLPRELRRHLNSLEERLLESMVWEKGSSMYN 505
E +L RE+ +HL E R++ES+ W S +++
Sbjct: 168 EGNLTREMIKHLERCEHRIMESLAWLSDSPLFD 200
>pdb|1GH6|B Chain B, Retinoblastoma Pocket Complexed With Sv40 Large T Antigen
Length = 333
Score = 101 bits (251), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 66/216 (30%), Positives = 108/216 (50%), Gaps = 29/216 (13%)
Query: 312 MTTAKWLRTVICPLPSKPSAELERFLKSCDKDVTTDVMRR----AHIILEAIFPSSGLGE 367
M T + L ++ +PS L + +C + +++R +I E + G G
Sbjct: 1 MNTIQQLMMILNSASDQPSENLISYFNNCTVNPKESILKRVKDIGYIFKEKFAKAVGAG- 59
Query: 368 RCVT-GSLQGANLMDNIWAEQRRLEALKLYYRVLEAMCTAEAQVLHAKNLTSLLTNERFH 426
CV GS QR ++LYYRV+E+M +E + L +N + LL + FH
Sbjct: 60 -CVAIGS-------------QRYKLGVRLYYRVMESMLKSEEERLSIQNFSKLLNDNIFH 105
Query: 427 RCMLACSAELVLATHKTVT---------MLFPAVLERTGITAFDLSKVIESFIRHEESLP 477
+LAC+ E+V+AT+ T + FP +L + AFD KVIESFI+ E +L
Sbjct: 106 MSLLACALEVVMATYSRSTSQNLDSGTDLSFPWILNVLNLKAFDFYKVIESFIKAEGNLT 165
Query: 478 RELRRHLNSLEERLLESMVWEKGSSMYNSLTVARPV 513
RE+ +HL E R++ES+ W S +++ + ++ V
Sbjct: 166 REMIKHLERCEHRIMESLAWLSDSPLFDLIKQSKLV 201
Score = 83.2 bits (204), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 75/132 (56%), Gaps = 13/132 (9%)
Query: 629 TGINIFFCKINKLAAVRINAMVERLQLSQ--QIRESVYCLFQQILNQRTSLFFNRHIDQI 686
T +++F+ K+ +LA +R+N + ERL LS+ ++ ++ LFQ L L +RH+DQI
Sbjct: 206 TSLSLFYKKVYRLAYLRLNTLCERL-LSEHPELEHIIWTLFQHTLQNEYELMRDRHLDQI 264
Query: 687 ILCCFYGVAKISQLNLTFREIIYNYRKQPQCKPQVFRSVFVDWASARQSGRSEQDHVDII 746
++C YG+ K+ ++L F+ I+ Y+ P + F+ V + E+++ II
Sbjct: 265 MMCSMYGICKVKNIDLKFKIIVTAYKDLPHAVQETFKRVLI----------KEEEYDSII 314
Query: 747 TFYNKIFVPAVK 758
FYN +F+ +K
Sbjct: 315 VFYNSVFMQRLK 326
>pdb|3POM|A Chain A, Crystal Structure Of The Unliganded Retinoblastoma Protein
Pocket Domain
pdb|3POM|B Chain B, Crystal Structure Of The Unliganded Retinoblastoma Protein
Pocket Domain
Length = 352
Score = 99.8 bits (247), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 65/213 (30%), Positives = 108/213 (50%), Gaps = 27/213 (12%)
Query: 314 TAKWLRTVICPLPSKPSAELERFLKSCDKDVTTDVMRRAHIILEAIFP---SSGLGERCV 370
T + L ++ +PS L + +C + +++R I IF + +G+ CV
Sbjct: 5 TIQQLMMILNSASDQPSENLISYFNNCTVNPKESILKRVKDI-GYIFKEKFAKAVGQGCV 63
Query: 371 -TGSLQGANLMDNIWAEQRRLEALKLYYRVLEAMCTAEAQVLHAKNLTSLLTNERFHRCM 429
GS QR ++LYYRV+E+M +E + L +N + LL + FH +
Sbjct: 64 EIGS-------------QRYKLGVRLYYRVMESMLKSEEERLSIQNFSKLLNDNIFHMSL 110
Query: 430 LACSAELVLATHKTVT---------MLFPAVLERTGITAFDLSKVIESFIRHEESLPREL 480
LAC+ E+V+AT+ T + FP +L + AFD KVIESFI+ E +L RE+
Sbjct: 111 LACALEVVMATYSRSTSQNLDSGTDLSFPWILNVLNLKAFDFYKVIESFIKAEGNLTREM 170
Query: 481 RRHLNSLEERLLESMVWEKGSSMYNSLTVARPV 513
+HL E R++ES+ W S +++ + ++ V
Sbjct: 171 IKHLERCEHRIMESLAWLSDSPLFDLIKQSKLV 203
Score = 83.6 bits (205), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 75/132 (56%), Gaps = 13/132 (9%)
Query: 629 TGINIFFCKINKLAAVRINAMVERLQLSQ--QIRESVYCLFQQILNQRTSLFFNRHIDQI 686
T +++F+ K+ +LA +R+N + ERL LS+ ++ ++ LFQ L L +RH+DQI
Sbjct: 210 TSLSLFYKKVYRLAYLRLNTLCERL-LSEHPELEHIIWTLFQHTLQNEYELMRDRHLDQI 268
Query: 687 ILCCFYGVAKISQLNLTFREIIYNYRKQPQCKPQVFRSVFVDWASARQSGRSEQDHVDII 746
++C YG+ K+ ++L F+ I+ Y+ P + F+ V + E+++ II
Sbjct: 269 MMCSMYGICKVKNIDLKFKIIVTAYKDLPHAVQETFKRVLI----------KEEEYDSII 318
Query: 747 TFYNKIFVPAVK 758
FYN +F+ +K
Sbjct: 319 VFYNSVFMQRLK 330
>pdb|2R7G|A Chain A, Structure Of The Retinoblastoma Protein Pocket Domain In
Complex With Adenovirus E1a Cr1 Domain
pdb|2R7G|C Chain C, Structure Of The Retinoblastoma Protein Pocket Domain In
Complex With Adenovirus E1a Cr1 Domain
Length = 347
Score = 99.0 bits (245), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 64/205 (31%), Positives = 104/205 (50%), Gaps = 27/205 (13%)
Query: 314 TAKWLRTVICPLPSKPSAELERFLKSCDKDVTTDVMRRAHIILEAIFP---SSGLGERCV 370
T + L ++ +PS L + +C + +++R I IF + +G+ CV
Sbjct: 2 TIQQLMMILNSASDQPSENLISYFNNCTVNPKESILKRVKDI-GYIFKEKFAKAVGQGCV 60
Query: 371 -TGSLQGANLMDNIWAEQRRLEALKLYYRVLEAMCTAEAQVLHAKNLTSLLTNERFHRCM 429
GS QR ++LYYRV+E+M +E + L +N + LL + FH +
Sbjct: 61 EIGS-------------QRYKLGVRLYYRVMESMLKSEEERLSIQNFSKLLNDNIFHMSL 107
Query: 430 LACSAELVLATHKTVT---------MLFPAVLERTGITAFDLSKVIESFIRHEESLPREL 480
LAC+ E+V+AT+ T + FP +L + AFD KVIESFI+ E +L RE+
Sbjct: 108 LACALEVVMATYSRSTSQNLDSGTDLSFPWILNVLNLKAFDFYKVIESFIKAEGNLTREM 167
Query: 481 RRHLNSLEERLLESMVWEKGSSMYN 505
+HL E R++ES+ W S +++
Sbjct: 168 IKHLERCEHRIMESLAWLSDSPLFD 192
Score = 83.6 bits (205), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 75/132 (56%), Gaps = 13/132 (9%)
Query: 629 TGINIFFCKINKLAAVRINAMVERLQLSQ--QIRESVYCLFQQILNQRTSLFFNRHIDQI 686
T +++F+ K+ +LA +R+N + ERL LS+ ++ ++ LFQ L L +RH+DQI
Sbjct: 205 TSLSLFYKKVYRLAYLRLNTLCERL-LSEHPELEHIIWTLFQHTLQNEYELMRDRHLDQI 263
Query: 687 ILCCFYGVAKISQLNLTFREIIYNYRKQPQCKPQVFRSVFVDWASARQSGRSEQDHVDII 746
++C YG+ K+ ++L F+ I+ Y+ P + F+ V + E+++ II
Sbjct: 264 MMCSMYGICKVKNIDLKFKIIVTAYKDLPHAVQETFKRVLI----------KEEEYDSII 313
Query: 747 TFYNKIFVPAVK 758
FYN +F+ +K
Sbjct: 314 VFYNSVFMQRLK 325
>pdb|1N4M|A Chain A, Structure Of Rb Tumor Suppressor Bound To The
Transactivation Domain Of E2f-2
pdb|1N4M|B Chain B, Structure Of Rb Tumor Suppressor Bound To The
Transactivation Domain Of E2f-2
Length = 345
Score = 98.6 bits (244), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 64/206 (31%), Positives = 103/206 (50%), Gaps = 29/206 (14%)
Query: 314 TAKWLRTVICPLPSKPSAELERFLKSCDKDVTTDVMRR----AHIILEAIFPSSGLGERC 369
T + L ++ +PS L + +C + +++R +I E + G G C
Sbjct: 2 TIQQLMMILNSASDQPSENLISYFNNCTVNPKESILKRVKDIGYIFKEKFAKAVGAG--C 59
Query: 370 VT-GSLQGANLMDNIWAEQRRLEALKLYYRVLEAMCTAEAQVLHAKNLTSLLTNERFHRC 428
V GS QR ++LYYRV+E+M +E + L +N + LL + FH
Sbjct: 60 VAIGS-------------QRYKLGVRLYYRVMESMLKSEEERLSIQNFSKLLNDNIFHMS 106
Query: 429 MLACSAELVLATHKTVT---------MLFPAVLERTGITAFDLSKVIESFIRHEESLPRE 479
+LAC+ E+V+AT+ T + FP +L + AFD KVIESFI+ E +L RE
Sbjct: 107 LLACALEVVMATYSRSTSQNLDSGTDLSFPWILNVLNLKAFDFYKVIESFIKAEGNLTRE 166
Query: 480 LRRHLNSLEERLLESMVWEKGSSMYN 505
+ +HL E R++ES+ W S +++
Sbjct: 167 MIKHLERCEHRIMESLAWLSDSPLFD 192
Score = 83.6 bits (205), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 75/132 (56%), Gaps = 13/132 (9%)
Query: 629 TGINIFFCKINKLAAVRINAMVERLQLSQ--QIRESVYCLFQQILNQRTSLFFNRHIDQI 686
T +++F+ K+ +LA +R+N + ERL LS+ ++ ++ LFQ L L +RH+DQI
Sbjct: 205 TSLSLFYKKVYRLAYLRLNTLCERL-LSEHPELEHIIWTLFQHTLQNEYELMRDRHLDQI 263
Query: 687 ILCCFYGVAKISQLNLTFREIIYNYRKQPQCKPQVFRSVFVDWASARQSGRSEQDHVDII 746
++C YG+ K+ ++L F+ I+ Y+ P + F+ V + E+++ II
Sbjct: 264 MMCSMYGICKVKNIDLKFKIIVTAYKDLPHAVQETFKRVLI----------KEEEYDSII 313
Query: 747 TFYNKIFVPAVK 758
FYN +F+ +K
Sbjct: 314 VFYNSVFMQRLK 325
>pdb|1AD6|A Chain A, Domain A Of Human Retinoblastoma Tumor Suppressor
Length = 185
Score = 97.1 bits (240), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 63/198 (31%), Positives = 100/198 (50%), Gaps = 27/198 (13%)
Query: 311 AMTTAKWLRTVICPLPSKPSAELERFLKSCDKDVTTDVMRRAHIILEAIFP---SSGLGE 367
M T + L ++ +PS L + +C + +++R I IF + +G+
Sbjct: 1 VMNTIQQLMMILNSASDQPSENLISYFNNCTVNPKESILKRVKDI-GYIFKEKFAKAVGQ 59
Query: 368 RCV-TGSLQGANLMDNIWAEQRRLEALKLYYRVLEAMCTAEAQVLHAKNLTSLLTNERFH 426
CV GS QR ++LYYRV+E+M +E + L +N + LL + FH
Sbjct: 60 GCVEIGS-------------QRYKLGVRLYYRVMESMLKSEEERLSIQNFSKLLNDNIFH 106
Query: 427 RCMLACSAELVLATHKTVT---------MLFPAVLERTGITAFDLSKVIESFIRHEESLP 477
+LAC+ E+V+AT+ T + FP +L + AFD KVIESFI+ E +L
Sbjct: 107 MSLLACALEVVMATYSRSTSQNLDSGTDLSFPWILNVLNLKAFDFYKVIESFIKAEGNLT 166
Query: 478 RELRRHLNSLEERLLESM 495
RE+ +HL E R++ES+
Sbjct: 167 REMIKHLERCEHRIMESL 184
>pdb|1GUX|B Chain B, Rb Pocket Bound To E7 Lxcxe Motif
pdb|1O9K|B Chain B, Crystal Structure Of The Retinoblastoma Tumour Suppressor
Protein Bound To E2f Peptide
pdb|1O9K|D Chain D, Crystal Structure Of The Retinoblastoma Tumour Suppressor
Protein Bound To E2f Peptide
pdb|1O9K|F Chain F, Crystal Structure Of The Retinoblastoma Tumour Suppressor
Protein Bound To E2f Peptide
pdb|1O9K|H Chain H, Crystal Structure Of The Retinoblastoma Tumour Suppressor
Protein Bound To E2f Peptide
Length = 152
Score = 82.0 bits (201), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 75/132 (56%), Gaps = 13/132 (9%)
Query: 629 TGINIFFCKINKLAAVRINAMVERLQLSQ--QIRESVYCLFQQILNQRTSLFFNRHIDQI 686
T +++F+ K+ +LA +R+N + ERL LS+ ++ ++ LFQ L L +RH+DQI
Sbjct: 10 TSLSLFYKKVYRLAYLRLNTLCERL-LSEHPELEHIIWTLFQHTLQNEYELMRDRHLDQI 68
Query: 687 ILCCFYGVAKISQLNLTFREIIYNYRKQPQCKPQVFRSVFVDWASARQSGRSEQDHVDII 746
++C YG+ K+ ++L F+ I+ Y+ P + F+ V + E+++ II
Sbjct: 69 MMCSMYGICKVKNIDLKFKIIVTAYKDLPHAVQETFKRVLI----------KEEEYDSII 118
Query: 747 TFYNKIFVPAVK 758
FYN +F+ +K
Sbjct: 119 VFYNSVFMQRLK 130
>pdb|3IXG|A Chain A, X-Ray Crystal Structure Of The Extended-Spectrum Ampc T70i
Mutant Beta-Lactamase With And Without
Benzo(B)thiophene-2- Boronic Acid Bound At 2.14 Angstrom
Resolution
pdb|3IXG|B Chain B, X-Ray Crystal Structure Of The Extended-Spectrum Ampc T70i
Mutant Beta-Lactamase With And Without
Benzo(B)thiophene-2- Boronic Acid Bound At 2.14 Angstrom
Resolution
Length = 358
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 21/47 (44%)
Query: 261 ITGAKRKFDSLASPVKTITSPLSPHRSSASHPNGIAGGATSKMVVTP 307
I G+ K A PVK IT P R+S H G GG S + P
Sbjct: 281 INGSDNKIALAARPVKAITPPTPAVRASWVHKTGATGGFGSYVAFIP 327
>pdb|3FKV|A Chain A, Ampc K67r Mutant Complexed With
Benzo(B)thiophene-2-Boronic Acid (Bzb)
pdb|3FKV|B Chain B, Ampc K67r Mutant Complexed With
Benzo(B)thiophene-2-Boronic Acid (Bzb)
pdb|3FKW|A Chain A, Ampc K67r Mutant Apo Structure
pdb|3FKW|B Chain B, Ampc K67r Mutant Apo Structure
Length = 358
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 21/47 (44%)
Query: 261 ITGAKRKFDSLASPVKTITSPLSPHRSSASHPNGIAGGATSKMVVTP 307
I G+ K A PVK IT P R+S H G GG S + P
Sbjct: 281 INGSDNKIALAARPVKAITPPTPAVRASWVHKTGATGGFGSYVAFIP 327
>pdb|1L0D|A Chain A, X-Ray Crystal Structure Of Ampc S64d Mutant Beta-Lactamase
pdb|1L0D|B Chain B, X-Ray Crystal Structure Of Ampc S64d Mutant Beta-Lactamase
Length = 358
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 21/47 (44%)
Query: 261 ITGAKRKFDSLASPVKTITSPLSPHRSSASHPNGIAGGATSKMVVTP 307
I G+ K A PVK IT P R+S H G GG S + P
Sbjct: 281 INGSDNKIALAARPVKAITPPTPAVRASWVHKTGATGGFGSYVAFIP 327
>pdb|1L0E|A Chain A, X-Ray Crystal Structure Of Ampc K67q Mutant Beta-Lactamase
pdb|1L0E|B Chain B, X-Ray Crystal Structure Of Ampc K67q Mutant Beta-Lactamase
Length = 358
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 21/47 (44%)
Query: 261 ITGAKRKFDSLASPVKTITSPLSPHRSSASHPNGIAGGATSKMVVTP 307
I G+ K A PVK IT P R+S H G GG S + P
Sbjct: 281 INGSDNKIALAARPVKAITPPTPAVRASWVHKTGATGGFGSYVAFIP 327
>pdb|1KVL|A Chain A, X-Ray Crystal Structure Of Ampc S64g Mutant Beta-Lactamase
In Complex With Substrate And Product Forms Of
Cephalothin
pdb|1KVL|B Chain B, X-Ray Crystal Structure Of Ampc S64g Mutant Beta-Lactamase
In Complex With Substrate And Product Forms Of
Cephalothin
pdb|1L0G|A Chain A, X-Ray Crystal Structure Of Ampc S64g Mutant Beta-Lactamase
pdb|1L0G|B Chain B, X-Ray Crystal Structure Of Ampc S64g Mutant Beta-Lactamase
Length = 358
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 21/47 (44%)
Query: 261 ITGAKRKFDSLASPVKTITSPLSPHRSSASHPNGIAGGATSKMVVTP 307
I G+ K A PVK IT P R+S H G GG S + P
Sbjct: 281 INGSDNKIALAARPVKAITPPTPAVRASWVHKTGATGGFGSYVAFIP 327
>pdb|2BLS|A Chain A, Ampc Beta-Lactamase From Escherichia Coli
pdb|2BLS|B Chain B, Ampc Beta-Lactamase From Escherichia Coli
pdb|3BLS|A Chain A, Ampc Beta-lactamase From Escherichia Coli
pdb|3BLS|B Chain B, Ampc Beta-lactamase From Escherichia Coli
pdb|1C3B|A Chain A, Ampc Beta-Lactamase From E. Coli Complexed With Inhibitor,
Benzo(B) Thiophene-2-Boronic Acid (Bzb)
pdb|1C3B|B Chain B, Ampc Beta-Lactamase From E. Coli Complexed With Inhibitor,
Benzo(B) Thiophene-2-Boronic Acid (Bzb)
pdb|1FCO|A Chain A, Crystal Structure Of The E. Coli Ampc Beta-Lactamase
Covalently Acylated With The Inhibitory Beta-Lactam,
Moxalactam
pdb|1FCO|B Chain B, Crystal Structure Of The E. Coli Ampc Beta-Lactamase
Covalently Acylated With The Inhibitory Beta-Lactam,
Moxalactam
pdb|1IEL|A Chain A, Crystal Structure Of Ampc Beta-Lactamase From E. Coli In
Complex With Ceftazidime
pdb|1IEL|B Chain B, Crystal Structure Of Ampc Beta-Lactamase From E. Coli In
Complex With Ceftazidime
pdb|1IEM|A Chain A, Crystal Structure Of Ampc Beta-Lactamase From E. Coli In
Complex With A Boronic Acid Inhibitor (1, Cefb4)
pdb|1IEM|B Chain B, Crystal Structure Of Ampc Beta-Lactamase From E. Coli In
Complex With A Boronic Acid Inhibitor (1, Cefb4)
pdb|1GA9|A Chain A, Crystal Structure Of Ampc Beta-Lactamase From E. Coli
Complexed With Non-Beta-Lactamase Inhibitor (2, 3-(4-
Benzenesulfonyl-Thiophene-2-Sulfonylamino)-Phenylboronic
Acid)
pdb|1GA9|B Chain B, Crystal Structure Of Ampc Beta-Lactamase From E. Coli
Complexed With Non-Beta-Lactamase Inhibitor (2, 3-(4-
Benzenesulfonyl-Thiophene-2-Sulfonylamino)-Phenylboronic
Acid)
pdb|1KVM|A Chain A, X-Ray Crystal Structure Of Ampc Wt Beta-Lactamase In
Complex With Covalently Bound Cephalothin
pdb|1KVM|B Chain B, X-Ray Crystal Structure Of Ampc Wt Beta-Lactamase In
Complex With Covalently Bound Cephalothin
pdb|1KDS|A Chain A, X-Ray Crystal Structure Of Ampc Beta-Lactamase From E.
Coli In Complex With The Inhibitor 3-Nitrophenylboronic
Acid
pdb|1KDS|B Chain B, X-Ray Crystal Structure Of Ampc Beta-Lactamase From E.
Coli In Complex With The Inhibitor 3-Nitrophenylboronic
Acid
pdb|1KDW|A Chain A, X-Ray Crystal Structure Of Ampc Beta-Lactamase From E.
Coli In Complex With The Inhibitor
4-Carboxyphenylboronic Acid
pdb|1KDW|B Chain B, X-Ray Crystal Structure Of Ampc Beta-Lactamase From E.
Coli In Complex With The Inhibitor
4-Carboxyphenylboronic Acid
pdb|1KE0|A Chain A, X-Ray Crystal Structure Of Ampc Beta-Lactamase From E.
Coli In Complex With The Inhibitor 4-(Carboxyvin-2-Yl)
Phenylboronic Acid
pdb|1KE0|B Chain B, X-Ray Crystal Structure Of Ampc Beta-Lactamase From E.
Coli In Complex With The Inhibitor 4-(Carboxyvin-2-Yl)
Phenylboronic Acid
pdb|1KE3|A Chain A, X-ray Crystal Structure Of Ampc Beta-lactamase From E.
Coli In Complex With The Inhibitor
4,4'-biphenyldiboronic Acid
pdb|1KE3|B Chain B, X-ray Crystal Structure Of Ampc Beta-lactamase From E.
Coli In Complex With The Inhibitor
4,4'-biphenyldiboronic Acid
pdb|1KE4|A Chain A, X-Ray Crystal Structure Of Ampc Beta-Lactamase From E.
Coli
pdb|1KE4|B Chain B, X-Ray Crystal Structure Of Ampc Beta-Lactamase From E.
Coli
pdb|1L2S|A Chain A, X-Ray Crystal Structure Of Ampc Beta-Lactamase From E.
Coli In Complex With A Dock-Predicted Non-Covalent
Inhibitor
pdb|1L2S|B Chain B, X-Ray Crystal Structure Of Ampc Beta-Lactamase From E.
Coli In Complex With A Dock-Predicted Non-Covalent
Inhibitor
pdb|1LL9|A Chain A, Crystal Structure Of Ampc Beta-Lactamase From E. Coli In
Complex With Amoxicillin
pdb|1LL9|B Chain B, Crystal Structure Of Ampc Beta-Lactamase From E. Coli In
Complex With Amoxicillin
pdb|1LLB|A Chain A, Crystal Structure Of Ampc Beta-Lactamase From E. Coli In
Complex With Atmo-Penicillin
pdb|1LLB|B Chain B, Crystal Structure Of Ampc Beta-Lactamase From E. Coli In
Complex With Atmo-Penicillin
pdb|1LL5|A Chain A, X-Ray Crystal Structure Of Ampc Wt Beta-Lactamase In
Complex With Covalently Bound Imipenem
pdb|1LL5|B Chain B, X-Ray Crystal Structure Of Ampc Wt Beta-Lactamase In
Complex With Covalently Bound Imipenem
pdb|1MXO|A Chain A, Ampc Beta-Lactamase In Complex With An
M.Carboxyphenylglycylboronic Acid Bearing The
Cephalothin R1 Side Chain
pdb|1MXO|B Chain B, Ampc Beta-Lactamase In Complex With An
M.Carboxyphenylglycylboronic Acid Bearing The
Cephalothin R1 Side Chain
pdb|1MY8|A Chain A, Ampc Beta-Lactamase In Complex With An
M.Carboxyphenylglycylboronic Acid Bearing The
Cephalothin R1 Side Chain
pdb|1MY8|B Chain B, Ampc Beta-Lactamase In Complex With An
M.Carboxyphenylglycylboronic Acid Bearing The
Cephalothin R1 Side Chain
pdb|1XGI|A Chain A, Ampc Beta-Lactamase In Complex With 3-(3-Nitro-
Phenylsulfamoyl)-Thiophene-2-Carboxylic Acid
pdb|1XGI|B Chain B, Ampc Beta-Lactamase In Complex With 3-(3-Nitro-
Phenylsulfamoyl)-Thiophene-2-Carboxylic Acid
pdb|1XGJ|A Chain A, Ampc Beta-Lactamase In Complex With
3-(4-Carboxy-2-Hydroxy-
Phenylsulfamoyl)-Thiophene-2-Carboxylic Acid
pdb|1XGJ|B Chain B, Ampc Beta-Lactamase In Complex With
3-(4-Carboxy-2-Hydroxy-
Phenylsulfamoyl)-Thiophene-2-Carboxylic Acid
pdb|2HDQ|A Chain A, Ampc Beta-Lactamase In Complex With 2-Carboxythiophene
pdb|2HDQ|B Chain B, Ampc Beta-Lactamase In Complex With 2-Carboxythiophene
pdb|2HDR|A Chain A, Ampc Beta-Lactamase In Complex With 4-Amino-3-
Hydroxybenzoic Acid
pdb|2HDR|B Chain B, Ampc Beta-Lactamase In Complex With 4-Amino-3-
Hydroxybenzoic Acid
pdb|2HDS|A Chain A, Ampc Beta-Lactamase In Complex With 4-Methanesulfonylamino
Benzoic Acid
pdb|2HDS|B Chain B, Ampc Beta-Lactamase In Complex With 4-Methanesulfonylamino
Benzoic Acid
pdb|2HDU|A Chain A, Ampc Beta-Lactamase In Complex With
2-Acetamidothiophene-3- Carboxylic Acid
pdb|2HDU|B Chain B, Ampc Beta-Lactamase In Complex With
2-Acetamidothiophene-3- Carboxylic Acid
pdb|2P9V|B Chain B, Structure Of Ampc Beta-Lactamase With Cross-Linked Active
Site After Exposure To Small Molecule Inhibitor
pdb|2I72|A Chain A, Ampc Beta-Lactamase In Complex With 5-Diformylaminomethyl-
Benzo[b]thiophen-2-Boronic Acid
pdb|2I72|B Chain B, Ampc Beta-Lactamase In Complex With 5-Diformylaminomethyl-
Benzo[b]thiophen-2-Boronic Acid
pdb|2RCX|A Chain A, Ampc Beta-Lactamase In Complex With
(1r)-1-(2-Thiophen-2-Yl-
Acetylamino)-1-(3-(2-Carboxyvinyl)-Phenyl) Methylboronic
Acid
pdb|2RCX|B Chain B, Ampc Beta-Lactamase In Complex With
(1r)-1-(2-Thiophen-2-Yl-
Acetylamino)-1-(3-(2-Carboxyvinyl)-Phenyl) Methylboronic
Acid
pdb|2PU2|A Chain A, Ampc Beta-Lactamase With Bound Phthalamide Inhibitor
pdb|2PU2|B Chain B, Ampc Beta-Lactamase With Bound Phthalamide Inhibitor
pdb|2PU4|A Chain A, Ampc Beta-Lacamase With Bound Covalent Oxadiazole
Inhibitor
pdb|2PU4|B Chain B, Ampc Beta-Lacamase With Bound Covalent Oxadiazole
Inhibitor
pdb|2R9W|A Chain A, Ampc Beta-lactamase With Bound Phthalamide Inhibitor
pdb|2R9W|B Chain B, Ampc Beta-lactamase With Bound Phthalamide Inhibitor
pdb|2R9X|A Chain A, Ampc Beta-Lactamase With Bound Phthalamide Inhibitor
pdb|2R9X|B Chain B, Ampc Beta-Lactamase With Bound Phthalamide Inhibitor
pdb|3BM6|A Chain A, Ampc Beta-Lactamase In Complex With A
P.Carboxyphenylboronic
pdb|3BM6|B Chain B, Ampc Beta-Lactamase In Complex With A
P.Carboxyphenylboronic
pdb|3GQZ|A Chain A, Ampc Beta-Lactamase In Complex With Fragment-Based
Inhibitor
pdb|3GQZ|B Chain B, Ampc Beta-Lactamase In Complex With Fragment-Based
Inhibitor
pdb|3GR2|A Chain A, Ampc Beta-Lactamase In Complex With Fragment-Based
Inhibitor
pdb|3GR2|B Chain B, Ampc Beta-Lactamase In Complex With Fragment-Based
Inhibitor
pdb|3GRJ|A Chain A, Ampc Beta-Lactamase In Complex With Fragment-Based
Inhibitor
pdb|3GRJ|B Chain B, Ampc Beta-Lactamase In Complex With Fragment-Based
Inhibitor
pdb|3GSG|A Chain A, Ampc Beta-Lactamase In Complex With Fragment-Based
Inhibitor
pdb|3GSG|B Chain B, Ampc Beta-Lactamase In Complex With Fragment-Based
Inhibitor
pdb|3GTC|A Chain A, Ampc Beta-Lactamase In Complex With Fragment-Based
Inhibitor
pdb|3GTC|B Chain B, Ampc Beta-Lactamase In Complex With Fragment-Based
Inhibitor
pdb|3GV9|A Chain A, Ampc Beta-Lactamase In Complex With Fragment-Based
Inhibitor
pdb|3GV9|B Chain B, Ampc Beta-Lactamase In Complex With Fragment-Based
Inhibitor
pdb|3GVB|A Chain A, Ampc Beta-Lactamase In Complex With Fragment-Based
Inhibitor
pdb|3GVB|B Chain B, Ampc Beta-Lactamase In Complex With Fragment-Based
Inhibitor
pdb|3O86|A Chain A, Crystal Structure Of Ampc Beta-Lactamase In Complex With A
Sulfonamide Boronic Acid Inhibitor
pdb|3O86|B Chain B, Crystal Structure Of Ampc Beta-Lactamase In Complex With A
Sulfonamide Boronic Acid Inhibitor
pdb|3O87|A Chain A, Crystal Structure Of Ampc Beta-Lactamase In Complex With A
Sulfonamide Boronic Acid Inhibitor
pdb|3O87|B Chain B, Crystal Structure Of Ampc Beta-Lactamase In Complex With A
Sulfonamide Boronic Acid Inhibitor
pdb|3O88|A Chain A, Crystal Structure Of Ampc Beta-Lactamase In Complex With A
Sulfonamide Boronic Acid Inhibitor
pdb|3O88|B Chain B, Crystal Structure Of Ampc Beta-Lactamase In Complex With A
Sulfonamide Boronic Acid Inhibitor
pdb|4E3I|A Chain A, Crystal Structure Of Ampc Beta-Lactamase In Complex With A
Designed 3- Carboxyl Benzyl Sulfonamide Boronic Acid
Inhibitor
pdb|4E3I|B Chain B, Crystal Structure Of Ampc Beta-Lactamase In Complex With A
Designed 3- Carboxyl Benzyl Sulfonamide Boronic Acid
Inhibitor
pdb|4E3J|A Chain A, Crystal Structure Of Ampc Beta-Lactamase In Complex With A
Designed 4- Tetrazolyl Benzene Sulfonamide Boronic Acid
Inhibitor
pdb|4E3J|B Chain B, Crystal Structure Of Ampc Beta-Lactamase In Complex With A
Designed 4- Tetrazolyl Benzene Sulfonamide Boronic Acid
Inhibitor
pdb|4E3K|A Chain A, Crystal Structure Of Ampc Beta-Lactamase In Complex With A
Designed 4- Tetrazolyl Pyridine Sulfonamide Boronic Acid
Inhibitor
pdb|4E3K|B Chain B, Crystal Structure Of Ampc Beta-Lactamase In Complex With A
Designed 4- Tetrazolyl Pyridine Sulfonamide Boronic Acid
Inhibitor
pdb|4E3L|A Chain A, Crystal Structure Of Ampc Beta-Lactamase In Complex With A
3-Chloro-4- Tetrazolyl Benzene Sulfonamide Boronic Acid
Inhibitor
pdb|4E3L|B Chain B, Crystal Structure Of Ampc Beta-Lactamase In Complex With A
3-Chloro-4- Tetrazolyl Benzene Sulfonamide Boronic Acid
Inhibitor
pdb|4E3M|A Chain A, Crystal Structure Of Ampc Beta-Lactamase In Complex With A
2-Chloro-4- Tetrazolyl Benzene Sulfonamide Boronic Acid
Inhibitor
pdb|4E3M|B Chain B, Crystal Structure Of Ampc Beta-Lactamase In Complex With A
2-Chloro-4- Tetrazolyl Benzene Sulfonamide Boronic Acid
Inhibitor
pdb|4E3N|A Chain A, Crystal Structure Of Ampc Beta-Lactamase In Complex With A
2- Trifluoromethyl-4-Tetrazolyl Benzene Sulfonamide
Boronic Acid Inhibitor
pdb|4E3N|B Chain B, Crystal Structure Of Ampc Beta-Lactamase In Complex With A
2- Trifluoromethyl-4-Tetrazolyl Benzene Sulfonamide
Boronic Acid Inhibitor
pdb|4E3O|A Chain A, Crystal Structure Of Ampc Beta-Lactamase In Complex With A
Small Chloromethyl Sulfonamide Boronic Acid Inhibitor
pdb|4E3O|B Chain B, Crystal Structure Of Ampc Beta-Lactamase In Complex With A
Small Chloromethyl Sulfonamide Boronic Acid Inhibitor
Length = 358
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 21/47 (44%)
Query: 261 ITGAKRKFDSLASPVKTITSPLSPHRSSASHPNGIAGGATSKMVVTP 307
I G+ K A PVK IT P R+S H G GG S + P
Sbjct: 281 INGSDNKIALAARPVKAITPPTPAVRASWVHKTGATGGFGSYVAFIP 327
>pdb|3IWI|A Chain A, X-Ray Crystal Structure Of The Extended-Spectrum Ampc
Omega Loop Insertion (H210aaa) Mutant Beta-Lactamase At
1.64 Angstrom Resolution
pdb|3IWI|B Chain B, X-Ray Crystal Structure Of The Extended-Spectrum Ampc
Omega Loop Insertion (H210aaa) Mutant Beta-Lactamase At
1.64 Angstrom Resolution
Length = 361
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 21/47 (44%)
Query: 261 ITGAKRKFDSLASPVKTITSPLSPHRSSASHPNGIAGGATSKMVVTP 307
I G+ K A PVK IT P R+S H G GG S + P
Sbjct: 284 INGSDNKIALAARPVKAITPPTPAVRASWVHKTGATGGFGSYVAFIP 330
>pdb|2P9V|A Chain A, Structure Of Ampc Beta-Lactamase With Cross-Linked Active
Site After Exposure To Small Molecule Inhibitor
Length = 358
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 21/47 (44%)
Query: 261 ITGAKRKFDSLASPVKTITSPLSPHRSSASHPNGIAGGATSKMVVTP 307
I G+ K A PVK IT P R+S H G GG S + P
Sbjct: 281 INGSDNKIALAARPVKAITPPTPAVRASWVHXTGATGGFGSYVAFIP 327
>pdb|1FCM|A Chain A, Crystal Structure Of The E.Coli Ampc Beta-Lactamase Mutant
Q120lY150E Covalently Acylated With The Inhibitory
Beta-Lactam, Cloxacillin
pdb|1FCM|B Chain B, Crystal Structure Of The E.Coli Ampc Beta-Lactamase Mutant
Q120lY150E Covalently Acylated With The Inhibitory
Beta-Lactam, Cloxacillin
pdb|1FCN|A Chain A, Crystal Structure Of The E. Coli Ampc Beta-Lactamase
Mutant Q120lY150E COVALENTLY ACYLATED WITH THE SUBSTRATE
BETA-Lactam Loracarbef
pdb|1FCN|B Chain B, Crystal Structure Of The E. Coli Ampc Beta-Lactamase
Mutant Q120lY150E COVALENTLY ACYLATED WITH THE SUBSTRATE
BETA-Lactam Loracarbef
pdb|1O07|A Chain A, Crystal Structure Of The Complex Between Q120lY150E MUTANT
OF AMPC And A Beta-Lactam Inhibitor (Mxg)
pdb|1O07|B Chain B, Crystal Structure Of The Complex Between Q120lY150E MUTANT
OF AMPC And A Beta-Lactam Inhibitor (Mxg)
Length = 358
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 21/47 (44%)
Query: 261 ITGAKRKFDSLASPVKTITSPLSPHRSSASHPNGIAGGATSKMVVTP 307
I G+ K A PVK IT P R+S H G GG S + P
Sbjct: 281 INGSDNKIALAARPVKAITPPTPAVRASWVHKTGATGGFGSYVAFIP 327
>pdb|3IWQ|B Chain B, X-Ray Crystal Structure Of The Extended-Spectrum Ampc
E219k Mutant Beta-Lactamase At 1.84 Angstrom Resolution
pdb|3IWQ|A Chain A, X-Ray Crystal Structure Of The Extended-Spectrum Ampc
E219k Mutant Beta-Lactamase At 1.84 Angstrom Resolution
pdb|3IXB|B Chain B, X-Ray Crystal Structure Of The Extended-Spectrum Ampc
E219k Mutant Beta-Lactamase Complexed With
Benzo(B)thiophene-2- Boronic Acid (Bzb) At 1.63 Angstrom
Resolution
pdb|3IXB|A Chain A, X-Ray Crystal Structure Of The Extended-Spectrum Ampc
E219k Mutant Beta-Lactamase Complexed With
Benzo(B)thiophene-2- Boronic Acid (Bzb) At 1.63 Angstrom
Resolution
Length = 358
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 21/47 (44%)
Query: 261 ITGAKRKFDSLASPVKTITSPLSPHRSSASHPNGIAGGATSKMVVTP 307
I G+ K A PVK IT P R+S H G GG S + P
Sbjct: 281 INGSDNKIALAARPVKAITPPTPAVRASWVHKTGATGGFGSYVAFIP 327
>pdb|1FSW|A Chain A, Ampc Beta-Lactamase From E. Coli Complexed With Inhibitor
Cephalothinboronic Acid
pdb|1FSW|B Chain B, Ampc Beta-Lactamase From E. Coli Complexed With Inhibitor
Cephalothinboronic Acid
pdb|1FSY|A Chain A, Ampc Beta-Lactamase From E. Coli Complexed With Inhibitor
Cloxacillinboronic Acid
pdb|1FSY|B Chain B, Ampc Beta-Lactamase From E. Coli Complexed With Inhibitor
Cloxacillinboronic Acid
Length = 358
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 21/47 (44%)
Query: 261 ITGAKRKFDSLASPVKTITSPLSPHRSSASHPNGIAGGATSKMVVTP 307
I G+ K A PVK IT P R+S H G GG S + P
Sbjct: 281 INGSDNKIALAARPVKAITPPTPAVRASWVHKTGATGGFGSYVAFIP 327
>pdb|1L0F|A Chain A, X-Ray Crystal Structure Of Ampc N152h Mutant
Beta-Lactamase
pdb|1L0F|B Chain B, X-Ray Crystal Structure Of Ampc N152h Mutant
Beta-Lactamase
Length = 358
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 21/47 (44%)
Query: 261 ITGAKRKFDSLASPVKTITSPLSPHRSSASHPNGIAGGATSKMVVTP 307
I G+ K A PVK IT P R+S H G GG S + P
Sbjct: 281 INGSDNKIALAARPVKAITPPTPAVRASWVHKTGATGGFGSYVAFIP 327
>pdb|1I5Q|A Chain A, Crystal Structure Of The E. Coli Ampc Beta-Lactamase
Mutant N152a Covalently Acylated With The Inhibitory
Beta-Lactam, Moxalactam
pdb|1I5Q|B Chain B, Crystal Structure Of The E. Coli Ampc Beta-Lactamase
Mutant N152a Covalently Acylated With The Inhibitory
Beta-Lactam, Moxalactam
Length = 358
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 21/47 (44%)
Query: 261 ITGAKRKFDSLASPVKTITSPLSPHRSSASHPNGIAGGATSKMVVTP 307
I G+ K A PVK IT P R+S H G GG S + P
Sbjct: 281 INGSDNKIALAARPVKAITPPTPAVRASWVHKTGATGGFGSYVAFIP 327
>pdb|3IWO|A Chain A, X-Ray Crystal Structure Of The Extended-Spectrum Ampc
Y221g Mutant Beta-Lactamase At 1.90 Angstrom Resolution
pdb|3IWO|B Chain B, X-Ray Crystal Structure Of The Extended-Spectrum Ampc
Y221g Mutant Beta-Lactamase At 1.90 Angstrom Resolution
pdb|3IXH|B Chain B, X-Ray Crystal Structure Of The Extended-Spectrum Ampc
Y221g Mutant Beta-Lactamase In Complex With Cefotaxime
At 2.3 Angstrom Resolution
pdb|3IXH|A Chain A, X-Ray Crystal Structure Of The Extended-Spectrum Ampc
Y221g Mutant Beta-Lactamase In Complex With Cefotaxime
At 2.3 Angstrom Resolution
Length = 358
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 21/47 (44%)
Query: 261 ITGAKRKFDSLASPVKTITSPLSPHRSSASHPNGIAGGATSKMVVTP 307
I G+ K A PVK IT P R+S H G GG S + P
Sbjct: 281 INGSDNKIALAARPVKAITPPTPAVRASWVHKTGATGGFGSYVAFIP 327
>pdb|2FFY|B Chain B, Ampc Beta-Lactamase N289a Mutant In Complex With A Boronic
Acid Deacylation Transition State Analog Compound Sm3
Length = 358
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 21/47 (44%)
Query: 261 ITGAKRKFDSLASPVKTITSPLSPHRSSASHPNGIAGGATSKMVVTP 307
I G+ K A PVK IT P R+S H G GG S + P
Sbjct: 281 INGSDAKIALAARPVKAITPPTPAVRASWVHKTGATGGFGSYVAFIP 327
>pdb|1PI4|A Chain A, Structure Of N289a Mutant Of Ampc In Complex With Sm3, A
Phenylglyclboronic Acid Bearing The Cephalothin R1 Side
Chain
pdb|1PI4|B Chain B, Structure Of N289a Mutant Of Ampc In Complex With Sm3, A
Phenylglyclboronic Acid Bearing The Cephalothin R1 Side
Chain
pdb|1PI5|A Chain A, Structure Of N289a Mutant Of Ampc In Complex With Sm2,
Carboxyphenylglycylboronic Acid Bearing The Cephalothin
R1 Side Chain
pdb|1PI5|B Chain B, Structure Of N289a Mutant Of Ampc In Complex With Sm2,
Carboxyphenylglycylboronic Acid Bearing The Cephalothin
R1 Side Chain
pdb|2FFY|A Chain A, Ampc Beta-Lactamase N289a Mutant In Complex With A Boronic
Acid Deacylation Transition State Analog Compound Sm3
Length = 358
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 21/47 (44%)
Query: 261 ITGAKRKFDSLASPVKTITSPLSPHRSSASHPNGIAGGATSKMVVTP 307
I G+ K A PVK IT P R+S H G GG S + P
Sbjct: 281 INGSDAKIALAARPVKAITPPTPAVRASWVHKTGATGGFGSYVAFIP 327
>pdb|3B2Y|A Chain A, Crystal Structure Of A Putative Metallopeptidase
(Sden_2526) From Shewanella Denitrificans Os217 At 1.74
A Resolution
pdb|3B2Y|B Chain B, Crystal Structure Of A Putative Metallopeptidase
(Sden_2526) From Shewanella Denitrificans Os217 At 1.74
A Resolution
Length = 275
Score = 29.3 bits (64), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 492 LESMVW--EKGSSMYNSLTVARPVLSAEINRLGLLADPMPSLDAIATHINFSSGGLSPVH 549
ES VW E + N + L+ E+NRLGL + + S+D+ A ++ S+ S +
Sbjct: 8 FESFVWQSEIFNCQSNDIDAFYAQLAEEVNRLGLKKNTLGSVDSFAINLYQSASQRSDLP 67
Query: 550 SL 551
SL
Sbjct: 68 SL 69
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,314,444
Number of Sequences: 62578
Number of extensions: 917340
Number of successful extensions: 1915
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1866
Number of HSP's gapped (non-prelim): 35
length of query: 912
length of database: 14,973,337
effective HSP length: 108
effective length of query: 804
effective length of database: 8,214,913
effective search space: 6604790052
effective search space used: 6604790052
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)