BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 002531
         (912 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4EBA|G Chain G, Crystal Structure Of The Rna14-Rna15 Complex
 pdb|4EBA|I Chain I, Crystal Structure Of The Rna14-Rna15 Complex
 pdb|4EBA|H Chain H, Crystal Structure Of The Rna14-Rna15 Complex
          Length = 174

 Score = 32.0 bits (71), Expect = 1.4,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 34/85 (40%), Gaps = 16/85 (18%)

Query: 301 EHVCQDGETQNIAIKEEGPQTGIGSADIKREDVFQSCLELTALAKQVENSPENSSLEIPA 360
           +H C+D +   +A+ EE PQ     A++   +   S  +LT LA   +  PE  +     
Sbjct: 67  QHFCKDDKETFVALLEEAPQLSYAIAELLLSNGVCSVDQLTQLAMASKQRPEEQT----- 121

Query: 361 SVENSPESHLLGNKTEDGNKTEDVD 385
                       N  EDG   E VD
Sbjct: 122 -----------DNTVEDGLDEEKVD 135


>pdb|2QCV|A Chain A, Crystal Structure Of A Putative
           5-Dehydro-2-Deoxygluconokinase (Iolc) From Bacillus
           Halodurans C-125 At 1.90 A Resolution
          Length = 332

 Score = 31.6 bits (70), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 17/75 (22%)

Query: 757 LFLSARAIVQAYLTRSFLLNLKQDGNALPNGPVVISPDGLFPSLFREVIRRAPHEFKIAC 816
           L+LS   + +AY+ RS LL +   G AL   P             RE + +A    ++A 
Sbjct: 124 LYLSPEEVNEAYIRRSKLLLV--SGTALSKSPS------------REAVLKA---IRLAK 166

Query: 817 LEDIKKLFPSDYNPF 831
             D+K +F  DY P+
Sbjct: 167 RNDVKVVFELDYRPY 181


>pdb|3W0F|A Chain A, Crystal Structure Of Mouse Endonuclease Viii-like 3
           (mneil3)
          Length = 287

 Score = 30.8 bits (68), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 41/90 (45%), Gaps = 14/90 (15%)

Query: 89  REVDSGKRNEPNESVELTTDDGSFIDSNSDSRNAVEVCRIEHSVSDSGLTRIRDECDSLS 148
           RE ++     P  +V+LT D   F DS+ + RN+VE              R+ +E D  S
Sbjct: 107 REGENRAGASPALAVQLTRDLICFYDSSVELRNSVE---------SQQRVRVMEELDICS 157

Query: 149 AD-RFQRAESD----GDRRLYEYQDEQSSL 173
               F RAES+    GDR L +   +Q  L
Sbjct: 158 PKFSFSRAESEVKKQGDRMLCDVLLDQRVL 187


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.313    0.131    0.381 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,721,217
Number of Sequences: 62578
Number of extensions: 1102113
Number of successful extensions: 1787
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1786
Number of HSP's gapped (non-prelim): 8
length of query: 912
length of database: 14,973,337
effective HSP length: 108
effective length of query: 804
effective length of database: 8,214,913
effective search space: 6604790052
effective search space used: 6604790052
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 56 (26.2 bits)