Query 002533
Match_columns 911
No_of_seqs 549 out of 3732
Neff 8.3
Searched_HMMs 29240
Date Tue Mar 26 16:07:13 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002533.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1253-1256//hhsearch_pdb/002533hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4aoj_A High affinity nerve gro 1.0 1 1 418.0 20.2 271 547-838 41-320 (329)
2 4asz_A BDNF/NT-3 growth factor 1.0 1 1 414.1 15.6 271 547-838 13-290 (299)
3 4gt4_A Tyrosine-protein kinase 1.0 1 1 410.2 16.9 265 549-834 28-303 (308)
4 4ase_A Vascular endothelial gr 1.0 1 1 403.2 19.3 279 540-838 57-348 (353)
5 3omv_A RAF proto-oncogene seri 1.0 1 1 399.7 22.5 261 546-837 35-300 (307)
6 4b9d_A Serine/threonine-protei 1.0 1 1 391.8 17.6 252 547-831 24-277 (350)
7 4fie_A Serine/threonine-protei 1.0 1 1 391.1 18.6 251 547-831 151-401 (423)
8 4fih_A Serine/threonine-protei 1.0 1 1 389.6 17.4 251 547-831 74-324 (346)
9 4g3f_A NF-kappa-beta-inducing 1.0 1 1 388.8 21.1 258 546-838 57-317 (336)
10 3hmm_A TGF-beta receptor type- 1.0 1 1 388.7 15.4 266 548-838 4-298 (303)
No 1
>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}
Probab=1.00 E-value=1 Score=418.00 Aligned_cols=271 Identities=28% Similarity=0.435 Sum_probs=221.7
Q ss_pred CCCCCCEEECCCCCEEEEEEEEEC-----CCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCEECCCCCEEE
Q ss_conf 487663032226937999999605-----880899998257885658999999999872032317542330025870579
Q 002533 547 CDFADHCIIGSGGFGHVFKGYIDD-----GSITVAVKRLNTSSMQGAREFRTEIEMISELRHLHIVSLLGFCDEHGEMIL 621 (911)
Q Consensus 547 ~~f~~~~~LG~G~fG~Vy~g~~~~-----~~~~vavK~l~~~~~~~~~~~~~Ei~~l~~l~H~nIv~l~g~~~~~~~~~l 621 (911)
.+|...+.||+|+||+||+|++.+ ++..||||+++..+....++|.+|+++|++++|||||+++|+|.+.+.+++
T Consensus 41 ~d~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~l 120 (329)
T 4aoj_A 41 RDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRFFGVCTEGRPLLM 120 (329)
T ss_dssp GGEEEEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEEE
T ss_pred HHEEEEEEECCCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEE
T ss_conf 99288779714778489989987866577896999999775797999999999999985899899969899998998999
Q ss_pred EEEECCCCCHHHHHHHHHHCCCC---CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCEEECCCCCE
Q ss_conf 99526998535676432110112---346899987144344778868799999760799958973324798565689966
Q 002533 622 VYEFMPRGNLRDHLYNSQKQNQN---QNQNQNSPLTWKRRLEISIGAARGLHYLHAGAKHTIIHRDVKSTNILLDENWAA 698 (911)
Q Consensus 622 V~Ey~~~gsL~~~L~~~~~~~~~---~~~~~~~~l~~~~~l~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~v 698 (911)
|||||++|+|.++|+........ .......+++|.++++|+.|+|.||+||| +++|+||||||+||||+.++.+
T Consensus 121 V~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH---~~~iiHRDLKp~NILl~~~~~~ 197 (329)
T 4aoj_A 121 VFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLA---GLHFVHRDLATRNCLVGQGLVV 197 (329)
T ss_dssp EEECCTTCBHHHHHHTSSCC-----------CCSCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEEETTTEE
T ss_pred EEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH---CCCEECCCCCHHHEEECCCCCE
T ss_conf 9982799939999986075410012211245788999999999999999999984---0884226666764898899968
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHH-CCCCCCCCCCCHHHHHHHHH
Q ss_conf 99522775679999987631123348655457132301588963578989999999994-99999898631000337667
Q 002533 699 KISDFGLSRMGPSGMSQSHVSTVVKGSFGYVDPEYIRRQQLTEKSDVYSFGVVLLEVLC-GRPPMINGAVRKEEVSLVLW 777 (911)
Q Consensus 699 ki~DFGla~~~~~~~~~~~~~~~~~gt~~y~APE~~~~~~~s~ksDVwSfGviL~Ellt-G~~p~~~~~~~~~~~~l~~~ 777 (911)
||+|||+++...... .........||+.|||||++.+..++.++|||||||+||||+| |+.||..... .+ +..
T Consensus 198 Ki~DFGla~~~~~~~-~~~~~~~~~gt~~ymAPE~~~~~~~~~~sDvwS~Gvvl~Ellt~G~~Pf~~~~~-~~---~~~- 271 (329)
T 4aoj_A 198 KIGDFGMSRDIYSTD-YYRVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQPWYQLSN-TE---AID- 271 (329)
T ss_dssp EECCCC-----------------CCCCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSSCH-HH---HHH-
T ss_pred EECCCCCCEECCCCC-CCEECCCCCCCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCH-HH---HHH-
T ss_conf 976660333656787-530047645565665826544799996630010578999998289999999899-99---999-
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 7653025871000492112888948799999999844433599999988999999998964
Q 002533 778 ARVSRARGTVDQIVDPRLRGKIAPVCLNKFVEIAGSCTDEEGFRRPTMGDVTWGLEFALQL 838 (911)
Q Consensus 778 ~~~~~~~~~~~~i~d~~l~~~~~~~~~~~l~~li~~Cl~~dP~~RPt~~eVl~~Le~~~~~ 838 (911)
... ...+...+..++..+.+|+.+||+.||++||||.||+++|+.+.+.
T Consensus 272 -~i~-----------~g~~~~~p~~~~~~~~~li~~cl~~dP~~RPs~~ei~~~L~~l~~~ 320 (329)
T 4aoj_A 272 -CIT-----------QGRELERPRACPPEVYAIMRGCWQREPQQRHSIKDVHARLQALAQA 320 (329)
T ss_dssp -HHH-----------HTCCCCCCTTCCHHHHHHHHHHCCSSTTTSCCHHHHHHHHHHHHHS
T ss_pred -HHH-----------CCCCCCCCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHC
T ss_conf -998-----------0898998644639999999997475965792999999999987458
No 2
>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*
Probab=1.00 E-value=1 Score=414.05 Aligned_cols=271 Identities=29% Similarity=0.430 Sum_probs=219.6
Q ss_pred CCCCCCEEECCCCCEEEEEEEEEC-----CCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCEECCCCCEEE
Q ss_conf 487663032226937999999605-----880899998257885658999999999872032317542330025870579
Q 002533 547 CDFADHCIIGSGGFGHVFKGYIDD-----GSITVAVKRLNTSSMQGAREFRTEIEMISELRHLHIVSLLGFCDEHGEMIL 621 (911)
Q Consensus 547 ~~f~~~~~LG~G~fG~Vy~g~~~~-----~~~~vavK~l~~~~~~~~~~~~~Ei~~l~~l~H~nIv~l~g~~~~~~~~~l 621 (911)
.+|...+.||+|+||+||+|.+.. ++..||||+++..+....++|.+|+++|++++|||||+++|+|.+.+.+++
T Consensus 13 ~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~l 92 (299)
T 4asz_A 13 HNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVEGDPLIM 92 (299)
T ss_dssp GGEEEEEEEEC--CCCEEEEEECSCC----CEEEEEEEECSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEEE
T ss_pred HHEEEEEEEEECCCCEEEEEEECCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEE
T ss_conf 89298249820788299999987766677887999999677785899999999999985899888628799956998999
Q ss_pred EEEECCCCCHHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCEEECCCCCEEE
Q ss_conf 99526998535676432110112-34689998714434477886879999976079995897332479856568996699
Q 002533 622 VYEFMPRGNLRDHLYNSQKQNQN-QNQNQNSPLTWKRRLEISIGAARGLHYLHAGAKHTIIHRDVKSTNILLDENWAAKI 700 (911)
Q Consensus 622 V~Ey~~~gsL~~~L~~~~~~~~~-~~~~~~~~l~~~~~l~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~vki 700 (911)
|||||++|+|.++|+........ ........++|.++++|+.|+|+||+||| +++|+||||||+|||++.++.+||
T Consensus 93 V~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH---~~~iiHRDlKp~NILl~~~~~~Ki 169 (299)
T 4asz_A 93 VFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLA---SQHFVHRDLATRNCLVGENLLVKI 169 (299)
T ss_dssp EEECCTTCBHHHHHHHTSHHHHHC----CCCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECGGGCEEE
T ss_pred EEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH---HCCCCCCCCCHHHEEECCCCCEEE
T ss_conf 99858999689999860864211123577788999999999999999999997---599046765776389879986898
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHH-CCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 522775679999987631123348655457132301588963578989999999994-9999989863100033766776
Q 002533 701 SDFGLSRMGPSGMSQSHVSTVVKGSFGYVDPEYIRRQQLTEKSDVYSFGVVLLEVLC-GRPPMINGAVRKEEVSLVLWAR 779 (911)
Q Consensus 701 ~DFGla~~~~~~~~~~~~~~~~~gt~~y~APE~~~~~~~s~ksDVwSfGviL~Ellt-G~~p~~~~~~~~~~~~l~~~~~ 779 (911)
+|||+++..... ..........||+.|||||++.++.++.++|||||||+||||+| |+.||..... .+ +...
T Consensus 170 ~DFGla~~~~~~-~~~~~~~~~~gt~~ymAPE~~~~~~~~~k~DVwS~Gvvl~Ellt~G~~Pf~~~~~-~~---~~~~-- 242 (299)
T 4asz_A 170 GDFGMSRDVYST-DYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLSN-NE---VIEC-- 242 (299)
T ss_dssp CCCSCHHHHTGG-GCEEETTTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCH-HH---HHHH--
T ss_pred CCCCCCEECCCC-CCEEECCCEECCHHHCCHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCH-HH---HHHH--
T ss_conf 873001006788-7416647513470103889870799970366778899999998089999999899-99---9999--
Q ss_pred HHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 53025871000492112888948799999999844433599999988999999998964
Q 002533 780 VSRARGTVDQIVDPRLRGKIAPVCLNKFVEIAGSCTDEEGFRRPTMGDVTWGLEFALQL 838 (911)
Q Consensus 780 ~~~~~~~~~~i~d~~l~~~~~~~~~~~l~~li~~Cl~~dP~~RPt~~eVl~~Le~~~~~ 838 (911)
.. ...+...+..++..+.+|+.+||+.||++||||.+|++.|+.+.+.
T Consensus 243 i~-----------~~~~~~~p~~~~~~~~~li~~cl~~dP~~RPs~~~i~~~L~~~~~~ 290 (299)
T 4asz_A 243 IT-----------QGRVLQRPRTCPQEVYELMLGCWQREPHMRKNIKGIHTLLQNLAKA 290 (299)
T ss_dssp HH-----------HTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred HH-----------CCCCCCCCCCCHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHC
T ss_conf 98-----------0898899741439999999997687966892999999999877763
No 3
>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A
Probab=1.00 E-value=1 Score=410.21 Aligned_cols=265 Identities=25% Similarity=0.363 Sum_probs=212.0
Q ss_pred CCCCEEECCCCCEEEEEEEEEC-----CCEEEEEEECCCCC-HHHHHHHHHHHHHHHHCCCCCEEEECCEECCCCCEEEE
Q ss_conf 7663032226937999999605-----88089999825788-56589999999998720323175423300258705799
Q 002533 549 FADHCIIGSGGFGHVFKGYIDD-----GSITVAVKRLNTSS-MQGAREFRTEIEMISELRHLHIVSLLGFCDEHGEMILV 622 (911)
Q Consensus 549 f~~~~~LG~G~fG~Vy~g~~~~-----~~~~vavK~l~~~~-~~~~~~~~~Ei~~l~~l~H~nIv~l~g~~~~~~~~~lV 622 (911)
+...+.||+|+||+||+|.+.+ .+..||||+++... ....++|.+|+.++++++|||||+++|+|.+.+.+++|
T Consensus 28 ~~~~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~~~~~~lV 107 (308)
T 4gt4_A 28 VRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVVCLLGVVTKDQPLSMI 107 (308)
T ss_dssp EEEEEEEEECSSCEEEEEEEC-------CEEEEEEECCC-CCC-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEE
T ss_pred CEEEEEECCCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCEEEEE
T ss_conf 85866913588848999998577658888699999988014968999999999999858998987736499889988999
Q ss_pred EEECCCCCHHHHHHHHHHCCC----CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCEEECCCCCE
Q ss_conf 952699853567643211011----2346899987144344778868799999760799958973324798565689966
Q 002533 623 YEFMPRGNLRDHLYNSQKQNQ----NQNQNQNSPLTWKRRLEISIGAARGLHYLHAGAKHTIIHRDVKSTNILLDENWAA 698 (911)
Q Consensus 623 ~Ey~~~gsL~~~L~~~~~~~~----~~~~~~~~~l~~~~~l~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~v 698 (911)
||||++|+|.++|+....... .........++|..+++|+.|||+||+||| +++|+||||||+||||++++.+
T Consensus 108 ~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH---~~~iiHRDLK~~NILl~~~~~~ 184 (308)
T 4gt4_A 108 FSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLS---SHHVVHKDLATRNVLVYDKLNV 184 (308)
T ss_dssp EECCSSCBHHHHHHTTCSSCCCC-----CCEECCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECGGGCE
T ss_pred EECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH---HCCCCCCCCCCCCEEECCCCCE
T ss_conf 9818999499999862765433332211112468999999999999999999998---6899778736230688799978
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHH-CCCCCCCCCCCHHHHHHHHH
Q ss_conf 99522775679999987631123348655457132301588963578989999999994-99999898631000337667
Q 002533 699 KISDFGLSRMGPSGMSQSHVSTVVKGSFGYVDPEYIRRQQLTEKSDVYSFGVVLLEVLC-GRPPMINGAVRKEEVSLVLW 777 (911)
Q Consensus 699 ki~DFGla~~~~~~~~~~~~~~~~~gt~~y~APE~~~~~~~s~ksDVwSfGviL~Ellt-G~~p~~~~~~~~~~~~l~~~ 777 (911)
||+|||+++...... .........||+.|||||++.++.++.++|||||||+||||+| |+.||.+... . .+...
T Consensus 185 Ki~DFGlar~~~~~~-~~~~~~~~~gt~~ymAPE~l~~~~~s~ksDVwSfGvvl~El~t~g~~Pf~~~~~-~---~~~~~ 259 (308)
T 4gt4_A 185 KISDLGLFREVYAAD-YYKLLGNSLLPIRWMAPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYSN-Q---DVVEM 259 (308)
T ss_dssp EECCSCCBCGGGGGG-CBCSSSSSCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTCCH-H---HHHHH
T ss_pred EECCCCCCEECCCCC-CEEEECCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCH-H---HHHHH
T ss_conf 988760202336777-404734512577656989982799996300015799999999689999999899-9---99999
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 765302587100049211288894879999999984443359999998899999999
Q 002533 778 ARVSRARGTVDQIVDPRLRGKIAPVCLNKFVEIAGSCTDEEGFRRPTMGDVTWGLEF 834 (911)
Q Consensus 778 ~~~~~~~~~~~~i~d~~l~~~~~~~~~~~l~~li~~Cl~~dP~~RPt~~eVl~~Le~ 834 (911)
. ....+...+..|+..+.+|+.+||+.||++||||.+|++.|+.
T Consensus 260 i-------------~~~~~~~~p~~~~~~~~~li~~C~~~dP~~RPs~~ei~~~L~a 303 (308)
T 4gt4_A 260 I-------------RNRQVLPCPDDCPAWVYALMIECWNEFPSRRPRFKDIHSRLRA 303 (308)
T ss_dssp H-------------HTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHT
T ss_pred H-------------HCCCCCCCCCCCHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHH
T ss_conf 9-------------8199899962036999999999758796579299999999985
No 4
>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*
Probab=1.00 E-value=1 Score=403.17 Aligned_cols=279 Identities=27% Similarity=0.355 Sum_probs=221.9
Q ss_pred HHHHHHCCCCCCCEEECCCCCEEEEEEEEECCC-----EEEEEEECCCCC-HHHHHHHHHHHHHHHHCCC-CCEEEECCE
Q ss_conf 899987048766303222693799999960588-----089999825788-5658999999999872032-317542330
Q 002533 540 TEIKQATCDFADHCIIGSGGFGHVFKGYIDDGS-----ITVAVKRLNTSS-MQGAREFRTEIEMISELRH-LHIVSLLGF 612 (911)
Q Consensus 540 ~el~~at~~f~~~~~LG~G~fG~Vy~g~~~~~~-----~~vavK~l~~~~-~~~~~~~~~Ei~~l~~l~H-~nIv~l~g~ 612 (911)
.+.+...++|...+.||+|+||+||+|.+.+.+ ..||||++.... ....++|.+|+++|.+++| ||||+++|+
T Consensus 57 ~~wEi~~~~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~~~~~~~~~~E~~il~~l~hhpnIV~l~g~ 136 (353)
T 4ase_A 57 SKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGA 136 (353)
T ss_dssp HHHBCCGGGEEEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEE
T ss_pred CCCEECHHHEEEEEEEECCCCEEEEEEEECCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEE
T ss_conf 55170579959820982178959999998688854477599999976235868999999999999975799848778899
Q ss_pred ECCC-CCEEEEEEECCCCCHHHHHHHHHHCCCCC----CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCC
Q ss_conf 0258-70579995269985356764321101123----468999871443447788687999997607999589733247
Q 002533 613 CDEH-GEMILVYEFMPRGNLRDHLYNSQKQNQNQ----NQNQNSPLTWKRRLEISIGAARGLHYLHAGAKHTIIHRDVKS 687 (911)
Q Consensus 613 ~~~~-~~~~lV~Ey~~~gsL~~~L~~~~~~~~~~----~~~~~~~l~~~~~l~i~~~ia~gL~yLH~~~~~~ivH~DLkp 687 (911)
|.+. +.+++|||||++|+|.++|+......... .......++|.+++.|+.|||+||+||| +++|+||||||
T Consensus 137 ~~~~~~~~~iV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~yLH---~~~iiHRDLK~ 213 (353)
T 4ase_A 137 CTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLA---SRKCIHRDLAA 213 (353)
T ss_dssp ECCTTSCCEEEEECCTTEEHHHHHHHTGGGBCCC-------CTTCBCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSG
T ss_pred EEECCCEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHH---HCCEECCCCCC
T ss_conf 994697799999838989799999743566654333410110356899999999999999987676---27843574672
Q ss_pred CCEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHH-CCCCCCCCC
Q ss_conf 9856568996699522775679999987631123348655457132301588963578989999999994-999998986
Q 002533 688 TNILLDENWAAKISDFGLSRMGPSGMSQSHVSTVVKGSFGYVDPEYIRRQQLTEKSDVYSFGVVLLEVLC-GRPPMINGA 766 (911)
Q Consensus 688 ~NILl~~~~~vki~DFGla~~~~~~~~~~~~~~~~~gt~~y~APE~~~~~~~s~ksDVwSfGviL~Ellt-G~~p~~~~~ 766 (911)
+|||+++++.+||+|||+++....... ........||+.|||||++.++.++.++|||||||+||||+| |+.||.+..
T Consensus 214 ~NILl~~~~~vKi~DFGlar~~~~~~~-~~~~~~~~gt~~ymAPE~l~~~~y~~ksDVwS~Gv~l~El~t~G~~Pf~~~~ 292 (353)
T 4ase_A 214 RNILLSEKNVVKICDFGLARDIYKDPD-YVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVK 292 (353)
T ss_dssp GGEEECGGGCEEECCCGGGSCTTTCTT-SEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCC
T ss_pred CCEEECCCCCEEECCCHHHHHCCCCCC-CEEECCCCCCCCCCCHHHHHCCCCCCCCCEEEHHHHHHHHHHCCCCCCCCCC
T ss_conf 113057999789796543222456887-2032540146665698999469999755374068999999818999999989
Q ss_pred CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 310003376677653025871000492112888948799999999844433599999988999999998964
Q 002533 767 VRKEEVSLVLWARVSRARGTVDQIVDPRLRGKIAPVCLNKFVEIAGSCTDEEGFRRPTMGDVTWGLEFALQL 838 (911)
Q Consensus 767 ~~~~~~~l~~~~~~~~~~~~~~~i~d~~l~~~~~~~~~~~l~~li~~Cl~~dP~~RPt~~eVl~~Le~~~~~ 838 (911)
....-.. .+....+...+..++..+.+++.+||+.||++||||.+|+++|+.+++.
T Consensus 293 ~~~~~~~----------------~i~~g~~~~~p~~~~~~~~~li~~c~~~dP~~RPt~~eil~~L~~llq~ 348 (353)
T 4ase_A 293 IDEEFCR----------------RLKEGTRMRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNLLQA 348 (353)
T ss_dssp CSHHHHH----------------HHHHTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHH----------------HHHCCCCCCCCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHH
T ss_conf 8999999----------------9973898888865789999999997686966793999999999999987
No 5
>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=399.68 Aligned_cols=261 Identities=30% Similarity=0.506 Sum_probs=208.5
Q ss_pred CCCCCCCEEECCCCCEEEEEEEEECCCEEEEEEECCCC--CHHHHHHHHHHHHHHHHCCCCCEEEECCEECCCCCEEEEE
Q ss_conf 04876630322269379999996058808999982578--8565899999999987203231754233002587057999
Q 002533 546 TCDFADHCIIGSGGFGHVFKGYIDDGSITVAVKRLNTS--SMQGAREFRTEIEMISELRHLHIVSLLGFCDEHGEMILVY 623 (911)
Q Consensus 546 t~~f~~~~~LG~G~fG~Vy~g~~~~~~~~vavK~l~~~--~~~~~~~~~~Ei~~l~~l~H~nIv~l~g~~~~~~~~~lV~ 623 (911)
..++...+.||+|+||+||+|++.+ .||||+++.. +.+..+.|.+|++++++++|||||+++|+|.+ +.+++||
T Consensus 35 ~~~l~l~~~iG~G~fG~Vy~~~~~~---~vAvK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~-~~~~iVm 110 (307)
T 3omv_A 35 ASEVMLSTRIGSGSFGTVYKGKWHG---DVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTK-DNLAIVT 110 (307)
T ss_dssp TTSCCEEEECCCCSSSEEEEEESSS---EEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECS-SSCEEEE
T ss_pred HHHEEEEEEEEECCCCEEEEEEECC---CEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEC-CEEEEEE
T ss_conf 7994984498208886899999899---68999997268999999999999999985899887469999978-9589999
Q ss_pred EECCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCEEECCCCCEEEEEC
Q ss_conf 52699853567643211011234689998714434477886879999976079995897332479856568996699522
Q 002533 624 EFMPRGNLRDHLYNSQKQNQNQNQNQNSPLTWKRRLEISIGAARGLHYLHAGAKHTIIHRDVKSTNILLDENWAAKISDF 703 (911)
Q Consensus 624 Ey~~~gsL~~~L~~~~~~~~~~~~~~~~~l~~~~~l~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~vki~DF 703 (911)
|||++|+|.++|+. ....++|.++++|+.|+|.||+||| +++|+||||||+||||++++.+||+||
T Consensus 111 Ey~~gGsL~~~l~~-----------~~~~l~~~~~~~i~~qia~gL~yLH---~~~IiHRDlKp~NILl~~~~~~Ki~DF 176 (307)
T 3omv_A 111 QWCEGSSLYKHLHV-----------QETKFQMFQLIDIARQTAQGMDYLH---AKNIIHRDMKSNNIFLHEGLTVKIGDF 176 (307)
T ss_dssp ECCSSCBHHHHHHT-----------SCCCCCHHHHHHHHHHHHHHHHHHH---HTTCBCSCCCSSSEEEETTEEEEECCC
T ss_pred ECCCCCCHHHHHHH-----------CCCCCCHHHHHHHHHHHHHHHHHHH---HCCCCCCCCCHHHEEECCCCCEEEEEC
T ss_conf 74899878898752-----------4899999999999999999999997---799527855789978889990899441
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCC---CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 775679999987631123348655457132301---58896357898999999999499999898631000337667765
Q 002533 704 GLSRMGPSGMSQSHVSTVVKGSFGYVDPEYIRR---QQLTEKSDVYSFGVVLLEVLCGRPPMINGAVRKEEVSLVLWARV 780 (911)
Q Consensus 704 Gla~~~~~~~~~~~~~~~~~gt~~y~APE~~~~---~~~s~ksDVwSfGviL~ElltG~~p~~~~~~~~~~~~l~~~~~~ 780 (911)
|+|+...... .........||+.|||||++.+ +.++.++|||||||+||||+||+.||........ .... ..
T Consensus 177 Gla~~~~~~~-~~~~~~~~~GT~~ymAPE~l~~~~~~~y~~ksDVwS~Gvvl~Elltg~~Pf~~~~~~~~-~~~~--~~- 251 (307)
T 3omv_A 177 GLATVKSRWS-GSQQVEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHINNRDQ-IIFM--VG- 251 (307)
T ss_dssp SSCBC-------------CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCHHH-HHHH--HH-
T ss_pred CCCEECCCCC-CCEEECCCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHH-HHHH--HH-
T ss_conf 5754246677-64031564468772498786146899878687757289999999978899899996999-9999--96-
Q ss_pred HCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 302587100049211288894879999999984443359999998899999999896
Q 002533 781 SRARGTVDQIVDPRLRGKIAPVCLNKFVEIAGSCTDEEGFRRPTMGDVTWGLEFALQ 837 (911)
Q Consensus 781 ~~~~~~~~~i~d~~l~~~~~~~~~~~l~~li~~Cl~~dP~~RPt~~eVl~~Le~~~~ 837 (911)
. ....|.+ ...+..++..+.+++.+||+.||++||||.+|++.|+.+..
T Consensus 252 ---~----~~~~p~~-~~~~~~~~~~l~~li~~cl~~dP~~RPs~~ei~~~Le~l~~ 300 (307)
T 3omv_A 252 ---R----GYASPDL-SKLYKNCPKAMKRLVADCVKKVKEERPLFPQILSSIELLQH 300 (307)
T ss_dssp ---T----TCCCCCS-TTSCTTSCHHHHHHHHHHTCSSSTTSCCHHHHHHHHHHHHT
T ss_pred ---C----CCCCCCC-CCCCCCCHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHC
T ss_conf ---5----8888872-00354456999999999757797689098999999999745
No 6
>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*
Probab=1.00 E-value=1 Score=391.77 Aligned_cols=252 Identities=21% Similarity=0.355 Sum_probs=209.6
Q ss_pred CCCCCCEEECCCCCEEEEEEEEECCCEEEEEEECCCC--CHHHHHHHHHHHHHHHHCCCCCEEEECCEECCCCCEEEEEE
Q ss_conf 4876630322269379999996058808999982578--85658999999999872032317542330025870579995
Q 002533 547 CDFADHCIIGSGGFGHVFKGYIDDGSITVAVKRLNTS--SMQGAREFRTEIEMISELRHLHIVSLLGFCDEHGEMILVYE 624 (911)
Q Consensus 547 ~~f~~~~~LG~G~fG~Vy~g~~~~~~~~vavK~l~~~--~~~~~~~~~~Ei~~l~~l~H~nIv~l~g~~~~~~~~~lV~E 624 (911)
++|...+.||+|+||+||+|++..++..||||++... .....+.+.+|+++|++++|||||++++++.+.+.+|+|||
T Consensus 24 e~Y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~yiVmE 103 (350)
T 4b9d_A 24 EKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHPNIVQYRESFEENGSLYIVMD 103 (350)
T ss_dssp CCEEEEEEC------CEEEEEETTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred CCEEEEEEEECCCCEEEEEEEECCCCCEEEEEEEEHHHCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEE
T ss_conf 25588479702779399999988999899999986587897999999999999987799898919999998999999994
Q ss_pred ECCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCEEECCCCCEEEEECC
Q ss_conf 26998535676432110112346899987144344778868799999760799958973324798565689966995227
Q 002533 625 FMPRGNLRDHLYNSQKQNQNQNQNQNSPLTWKRRLEISIGAARGLHYLHAGAKHTIIHRDVKSTNILLDENWAAKISDFG 704 (911)
Q Consensus 625 y~~~gsL~~~L~~~~~~~~~~~~~~~~~l~~~~~l~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~vki~DFG 704 (911)
||++|+|.++|... ....+++.++..|+.||+.||+||| +++|+||||||+||||+.++.+||+|||
T Consensus 104 y~~gg~L~~~i~~~----------~~~~~~e~~~~~~~~qi~~aL~ylH---~~~IiHRDlKp~NILl~~~g~vKl~DFG 170 (350)
T 4b9d_A 104 YCEGGDLFKRINAQ----------KGVLFQEDQILDWFVQICLALKHVH---DRKILHRDIKSQNIFLTKDGTVQLGDFG 170 (350)
T ss_dssp CCTTCBHHHHHHHT----------TTCCCCHHHHHHHHHHHHHHHHHHH---HTTCEETTCCGGGEEECTTCCEEECSTT
T ss_pred CCCCCCHHHHHHHC----------CCCCCCHHHHHHHHHHHHHHHHHHH---HCCEEECCCCHHHEEECCCCCEEECCCC
T ss_conf 88998399999973----------8999978999999999999999999---8991513597899798789998976465
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 75679999987631123348655457132301588963578989999999994999998986310003376677653025
Q 002533 705 LSRMGPSGMSQSHVSTVVKGSFGYVDPEYIRRQQLTEKSDVYSFGVVLLEVLCGRPPMINGAVRKEEVSLVLWARVSRAR 784 (911)
Q Consensus 705 la~~~~~~~~~~~~~~~~~gt~~y~APE~~~~~~~s~ksDVwSfGviL~ElltG~~p~~~~~~~~~~~~l~~~~~~~~~~ 784 (911)
+++.... .........||+.|||||++.+..|+.++|||||||+||||+||+.||....... + ........
T Consensus 171 la~~~~~---~~~~~~~~~GT~~YmAPE~l~~~~y~~~~DiwSlGvilyemltG~~PF~~~~~~~----~--~~~i~~~~ 241 (350)
T 4b9d_A 171 IARVLNS---TVELARACIGTPYYLSPEICENKPYNNKSDIWALGCVLYELCTLKHAFEAGSMKN----L--VLKIISGS 241 (350)
T ss_dssp EESCCCH---HHHHHHHHHSCCTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHH----H--HHHHHHTC
T ss_pred CCEEECC---CCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHH----H--HHHHHCCC
T ss_conf 2144068---8541014578836039999879998959999999999999997879989969999----9--99998089
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHH
Q ss_conf 87100049211288894879999999984443359999998899999
Q 002533 785 GTVDQIVDPRLRGKIAPVCLNKFVEIAGSCTDEEGFRRPTMGDVTWG 831 (911)
Q Consensus 785 ~~~~~i~d~~l~~~~~~~~~~~l~~li~~Cl~~dP~~RPt~~eVl~~ 831 (911)
. ...+..++..+.+|+.+||+.||++|||+.|++++
T Consensus 242 --~---------~~~~~~~s~~~~~li~~~L~~dP~~R~s~~e~l~h 277 (350)
T 4b9d_A 242 --F---------PPVSLHYSYDLRSLVSQLFKRNPRDRPSVNSILEK 277 (350)
T ss_dssp --C---------CCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHTS
T ss_pred --C---------CCCCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHCC
T ss_conf --9---------99975579999999999855896679089999639
No 7
>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}
Probab=1.00 E-value=1 Score=391.12 Aligned_cols=251 Identities=22% Similarity=0.342 Sum_probs=208.6
Q ss_pred CCCCCCEEECCCCCEEEEEEEEECCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCEECCCCCEEEEEEEC
Q ss_conf 48766303222693799999960588089999825788565899999999987203231754233002587057999526
Q 002533 547 CDFADHCIIGSGGFGHVFKGYIDDGSITVAVKRLNTSSMQGAREFRTEIEMISELRHLHIVSLLGFCDEHGEMILVYEFM 626 (911)
Q Consensus 547 ~~f~~~~~LG~G~fG~Vy~g~~~~~~~~vavK~l~~~~~~~~~~~~~Ei~~l~~l~H~nIv~l~g~~~~~~~~~lV~Ey~ 626 (911)
..|...+.||+|+||.||+|.+..++..||||++........+.+.+|+.+|++++|||||++++++.+.+.+|||||||
T Consensus 151 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~iVmEy~ 230 (423)
T 4fie_A 151 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFL 230 (423)
T ss_dssp GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESTTCSSGGGHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECC
T ss_pred HHCEEEEEECCCCCCEEEEEEECCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEECC
T ss_conf 84386169624818489999999999899999986255468999999999998579989871689999899999999698
Q ss_pred CCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCEEECCCCCEEEEECCCC
Q ss_conf 99853567643211011234689998714434477886879999976079995897332479856568996699522775
Q 002533 627 PRGNLRDHLYNSQKQNQNQNQNQNSPLTWKRRLEISIGAARGLHYLHAGAKHTIIHRDVKSTNILLDENWAAKISDFGLS 706 (911)
Q Consensus 627 ~~gsL~~~L~~~~~~~~~~~~~~~~~l~~~~~l~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~vki~DFGla 706 (911)
++|+|.+++.. ..+++.++..|+.||+.||+||| +++|+||||||+||||+.++.+||+|||++
T Consensus 231 ~gG~L~~~i~~-------------~~l~e~~~~~~~~qil~aL~ylH---~~~IiHRDiKp~NILl~~~g~vKl~DFGla 294 (423)
T 4fie_A 231 EGGALTDIVTH-------------TRMNEEQIAAVCLAVLQALSVLH---AQGVIHRDIKSDSILLTHDGRVKLSDFGFC 294 (423)
T ss_dssp TTEEHHHHHHH-------------SCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSTTTEEECTTCCEEECCCTTC
T ss_pred CCCCHHHHHHC-------------CCCCHHHHHHHHHHHHHHHHHHH---HCCEECCCCCHHHEEECCCCCEEEECCCCC
T ss_conf 99828988761-------------69899999999999999999999---889044657877789858999898037265
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 67999998763112334865545713230158896357898999999999499999898631000337667765302587
Q 002533 707 RMGPSGMSQSHVSTVVKGSFGYVDPEYIRRQQLTEKSDVYSFGVVLLEVLCGRPPMINGAVRKEEVSLVLWARVSRARGT 786 (911)
Q Consensus 707 ~~~~~~~~~~~~~~~~~gt~~y~APE~~~~~~~s~ksDVwSfGviL~ElltG~~p~~~~~~~~~~~~l~~~~~~~~~~~~ 786 (911)
+..... ........||+.|||||++.+..|+.++|||||||++|||++|+.||.+.... +.. .....
T Consensus 295 ~~~~~~---~~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~-~~~-----~~i~~---- 361 (423)
T 4fie_A 295 AQVSKE---VPRRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPL-KAM-----KMIRD---- 361 (423)
T ss_dssp EECCSS---CCCBCCCEECTTTCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHH-HHH-----HHHHH----
T ss_pred EECCCC---CCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHH-HHH-----HHHHC----
T ss_conf 477788---76434666474727999977999996899999999999999787998986999-999-----99972----
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHH
Q ss_conf 100049211288894879999999984443359999998899999
Q 002533 787 VDQIVDPRLRGKIAPVCLNKFVEIAGSCTDEEGFRRPTMGDVTWG 831 (911)
Q Consensus 787 ~~~i~d~~l~~~~~~~~~~~l~~li~~Cl~~dP~~RPt~~eVl~~ 831 (911)
...+.+ .....+...+.+|+.+||+.||++|||+.|++++
T Consensus 362 ---~~~~~~--~~~~~~s~~~~dli~~~L~~dP~~R~ta~ell~H 401 (423)
T 4fie_A 362 ---NLPPRL--KNLHKVSPSLKGFLDRLLVRDPAQRATAAELLKH 401 (423)
T ss_dssp ---SCCCCC--SCTTSSCHHHHHHHHHHSCSSTTTSCCHHHHTTC
T ss_pred ---CCCCCC--CCCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHCC
T ss_conf ---799887--6501299999999999867895689099999609
No 8
>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*
Probab=1.00 E-value=1 Score=389.58 Aligned_cols=251 Identities=22% Similarity=0.345 Sum_probs=207.6
Q ss_pred CCCCCCEEECCCCCEEEEEEEEECCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCEECCCCCEEEEEEEC
Q ss_conf 48766303222693799999960588089999825788565899999999987203231754233002587057999526
Q 002533 547 CDFADHCIIGSGGFGHVFKGYIDDGSITVAVKRLNTSSMQGAREFRTEIEMISELRHLHIVSLLGFCDEHGEMILVYEFM 626 (911)
Q Consensus 547 ~~f~~~~~LG~G~fG~Vy~g~~~~~~~~vavK~l~~~~~~~~~~~~~Ei~~l~~l~H~nIv~l~g~~~~~~~~~lV~Ey~ 626 (911)
..|...+.||+|+||+||+|.+..++..||||++........+.+.+|+++|++++|||||++++++.+.+.+|+|||||
T Consensus 74 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~ivmEy~ 153 (346)
T 4fih_A 74 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFL 153 (346)
T ss_dssp GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCSSGGGGHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEECCC
T ss_pred HHCEEEEEEECCCCEEEEEEEECCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEECC
T ss_conf 75387079602728299999998999899999985276568999999999998679989991999999899999999698
Q ss_pred CCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCEEECCCCCEEEEECCCC
Q ss_conf 99853567643211011234689998714434477886879999976079995897332479856568996699522775
Q 002533 627 PRGNLRDHLYNSQKQNQNQNQNQNSPLTWKRRLEISIGAARGLHYLHAGAKHTIIHRDVKSTNILLDENWAAKISDFGLS 706 (911)
Q Consensus 627 ~~gsL~~~L~~~~~~~~~~~~~~~~~l~~~~~l~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~~vki~DFGla 706 (911)
++|+|.+++.. ..+++..+..|+.||+.||+||| +++|+||||||+||||+.++.+||+|||++
T Consensus 154 ~gg~L~~~l~~-------------~~l~e~~~~~~~~qi~~aL~ylH---~~~IiHRDlKp~NILl~~~g~vKl~DFGla 217 (346)
T 4fih_A 154 EGGALTDIVTH-------------TRMNEEQIAAVCLAVLQALSVLH---AQGVIHRDIKSDSILLTHDGRVKLSDFGFC 217 (346)
T ss_dssp TTEEHHHHHHH-------------SCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTCCEEECCCTTC
T ss_pred CCCCHHHHHHC-------------CCCCHHHHHHHHHHHHHHHHHHH---HCCCCCCCCCHHHEEECCCCCEEEECCCCC
T ss_conf 99808999871-------------89899999999999999999999---888355627889978879998899027575
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 67999998763112334865545713230158896357898999999999499999898631000337667765302587
Q 002533 707 RMGPSGMSQSHVSTVVKGSFGYVDPEYIRRQQLTEKSDVYSFGVVLLEVLCGRPPMINGAVRKEEVSLVLWARVSRARGT 786 (911)
Q Consensus 707 ~~~~~~~~~~~~~~~~~gt~~y~APE~~~~~~~s~ksDVwSfGviL~ElltG~~p~~~~~~~~~~~~l~~~~~~~~~~~~ 786 (911)
+..... ........||+.|||||++.+..|+.++|||||||++|||++|+.||.+... .+.. ......
T Consensus 218 ~~~~~~---~~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~-~~~~-----~~i~~~--- 285 (346)
T 4fih_A 218 AQVSKE---VPRRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPP-LKAM-----KMIRDN--- 285 (346)
T ss_dssp EECCSS---SCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCH-HHHH-----HHHHHS---
T ss_pred EECCCC---CCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCH-HHHH-----HHHHCC---
T ss_conf 366788---7753465627582799997799999689999999999999978799898599-9999-----999717---
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHH
Q ss_conf 100049211288894879999999984443359999998899999
Q 002533 787 VDQIVDPRLRGKIAPVCLNKFVEIAGSCTDEEGFRRPTMGDVTWG 831 (911)
Q Consensus 787 ~~~i~d~~l~~~~~~~~~~~l~~li~~Cl~~dP~~RPt~~eVl~~ 831 (911)
..+.+ .....++..+.+|+.+||+.||++|||+.|++++
T Consensus 286 ----~~~~~--~~~~~~s~~~~dli~~~L~~dP~~R~ta~e~l~H 324 (346)
T 4fih_A 286 ----LPPRL--KNLHKVSPSLKGFLDRLLVRDPAQRATAAELLKH 324 (346)
T ss_dssp ----SCCCC--SCGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTTC
T ss_pred ----CCCCC--CCCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHCC
T ss_conf ----99988--7502299999999999867995689099999609
No 9
>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*
Probab=1.00 E-value=1 Score=388.82 Aligned_cols=258 Identities=22% Similarity=0.252 Sum_probs=210.4
Q ss_pred CCCCCCCEEECCCCCEEEEEEEEECCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCEECCCCCEEEEEEE
Q ss_conf 04876630322269379999996058808999982578856589999999998720323175423300258705799952
Q 002533 546 TCDFADHCIIGSGGFGHVFKGYIDDGSITVAVKRLNTSSMQGAREFRTEIEMISELRHLHIVSLLGFCDEHGEMILVYEF 625 (911)
Q Consensus 546 t~~f~~~~~LG~G~fG~Vy~g~~~~~~~~vavK~l~~~~~~~~~~~~~Ei~~l~~l~H~nIv~l~g~~~~~~~~~lV~Ey 625 (911)
...|...++||+|+||.||+|++..++..||||+++.... ..+|+.++++++|||||++++++.+.+.+|+||||
T Consensus 57 ~~~~~~~~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~~~-----~~~E~~il~~l~HpnIV~l~~~~~~~~~~~ivmEy 131 (336)
T 4g3f_A 57 VHWMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEVF-----RVEELVACAGLSSPRIVPLYGAVREGPWVNIFMEL 131 (336)
T ss_dssp TTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTC-----CTHHHHTTTTCCCTTBCCEEEEEEETTEEEEEECC
T ss_pred HHHEEECCEECCCCCEEEEEEEECCCCCEEEEEEECHHHH-----HHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEEC
T ss_conf 3351768685138780999999889998999999788886-----99999999857998999399999989999999966
Q ss_pred CCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCEEECCCC-CEEEEECC
Q ss_conf 69985356764321101123468999871443447788687999997607999589733247985656899-66995227
Q 002533 626 MPRGNLRDHLYNSQKQNQNQNQNQNSPLTWKRRLEISIGAARGLHYLHAGAKHTIIHRDVKSTNILLDENW-AAKISDFG 704 (911)
Q Consensus 626 ~~~gsL~~~L~~~~~~~~~~~~~~~~~l~~~~~l~i~~~ia~gL~yLH~~~~~~ivH~DLkp~NILl~~~~-~vki~DFG 704 (911)
|++|+|.++|... ..+++..+..|+.|++.||+||| +++|+||||||+||||+.++ .+||+|||
T Consensus 132 ~~gg~L~~~l~~~------------~~l~e~~~~~~~~qi~~aL~ylH---~~~IiHRDlKp~NILl~~~g~~vKl~DFG 196 (336)
T 4g3f_A 132 LEGGSLGQLIKQM------------GCLPEDRALYYLGQALEGLEYLH---TRRILHGDVKADNVLLSSDGSRAALCDFG 196 (336)
T ss_dssp CTTCBHHHHHHHH------------SSCCHHHHHHHHHHHHHHHHHHH---TTTEECSCCCGGGEEECTTSCCEEECCCT
T ss_pred CCCCCHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHHHH---HCCCEECCCCHHHEEEECCCCEEEEEECC
T ss_conf 5998699999876------------99999999999999999999999---88904261677887995899979996278
Q ss_pred CCCCCCCCCCCC--CCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 756799999876--311233486554571323015889635789899999999949999989863100033766776530
Q 002533 705 LSRMGPSGMSQS--HVSTVVKGSFGYVDPEYIRRQQLTEKSDVYSFGVVLLEVLCGRPPMINGAVRKEEVSLVLWARVSR 782 (911)
Q Consensus 705 la~~~~~~~~~~--~~~~~~~gt~~y~APE~~~~~~~s~ksDVwSfGviL~ElltG~~p~~~~~~~~~~~~l~~~~~~~~ 782 (911)
+++......... .......||+.|||||++.+..++.++|||||||+||||+||+.||.......- . .....
T Consensus 197 la~~~~~~~~~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~Pf~~~~~~~~-~-----~~i~~ 270 (336)
T 4g3f_A 197 HALCLQPDGLGKSLLTGDYIPGTETHMAPEVVMGKPCDAKVDIWSSCCMMLHMLNGCHPWTQYFRGPL-C-----LKIAS 270 (336)
T ss_dssp TCEEC------------CCCCCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSTTTCCSCC-H-----HHHHH
T ss_pred CCEECCCCCCCCCEECCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHH-H-----HHHHC
T ss_conf 77685678765402217854558020089998899989089999999999999978699899899999-9-----99980
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 25871000492112888948799999999844433599999988999999998964
Q 002533 783 ARGTVDQIVDPRLRGKIAPVCLNKFVEIAGSCTDEEGFRRPTMGDVTWGLEFALQL 838 (911)
Q Consensus 783 ~~~~~~~i~d~~l~~~~~~~~~~~l~~li~~Cl~~dP~~RPt~~eVl~~Le~~~~~ 838 (911)
.... ....++.++..+.+++.+||+.||.+|||+.|+++.|...++.
T Consensus 271 ~~~~---------~~~~~~~~s~~~~~li~~~L~~dP~~R~sa~el~~~l~~~l~~ 317 (336)
T 4g3f_A 271 EPPP---------IREIPPSCAPLTAQAIQEGLRKEPVHRASAMELRRKVGKALQE 317 (336)
T ss_dssp SCCG---------GGGSCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred CCCC---------CHHCCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHH
T ss_conf 8998---------0025866799999999997628976895999999999999754
No 10
>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*
Probab=1.00 E-value=1 Score=388.73 Aligned_cols=266 Identities=25% Similarity=0.303 Sum_probs=199.9
Q ss_pred CCCCCEEECCCCCEEEEEEEEECCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCEECCCC----CEEEEE
Q ss_conf 8766303222693799999960588089999825788565899999999987203231754233002587----057999
Q 002533 548 DFADHCIIGSGGFGHVFKGYIDDGSITVAVKRLNTSSMQGAREFRTEIEMISELRHLHIVSLLGFCDEHG----EMILVY 623 (911)
Q Consensus 548 ~f~~~~~LG~G~fG~Vy~g~~~~~~~~vavK~l~~~~~~~~~~~~~Ei~~l~~l~H~nIv~l~g~~~~~~----~~~lV~ 623 (911)
++...+.||+|+||+||+|++. +..||||+++.... ....++.|+..+.+++|||||+++|+|.+++ .+++||
T Consensus 4 ~i~L~~~iG~G~fG~Vy~~~~~--g~~VAvK~l~~~~~-~~~~~e~Ei~~~~~l~HpNIv~l~g~~~~~~~~~~~~~lV~ 80 (303)
T 3hmm_A 4 TIVLQESIGKGRFGEVWRGKWR--GEEVAVKIFSSREE-RSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVS 80 (303)
T ss_dssp GEEEEEEEEECSSSEEEEEEET--TEEEEEEEECGGGH-HHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEEE
T ss_pred EEEEEEEEEECCCEEEEEEEEC--CEEEEEEEECCCCH-HHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCEEEEEEE
T ss_conf 8999789840899399999999--98999999883133-66999999999860899988709999984688723788775
Q ss_pred EECCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC-----CCCCEEEECCCCCCEEECCCCCE
Q ss_conf 5269985356764321101123468999871443447788687999997607-----99958973324798565689966
Q 002533 624 EFMPRGNLRDHLYNSQKQNQNQNQNQNSPLTWKRRLEISIGAARGLHYLHAG-----AKHTIIHRDVKSTNILLDENWAA 698 (911)
Q Consensus 624 Ey~~~gsL~~~L~~~~~~~~~~~~~~~~~l~~~~~l~i~~~ia~gL~yLH~~-----~~~~ivH~DLkp~NILl~~~~~v 698 (911)
|||++|+|.++|+. ..++|..+++++.|+|.||+|||+. ..++|+||||||+||||+.++.+
T Consensus 81 Ey~~~gsL~~~l~~-------------~~l~~~~~~~i~~~ia~gl~ylH~~~~~~~~~~~IiHRDlKp~NILl~~~~~~ 147 (303)
T 3hmm_A 81 DYHEHGSLFDYLNR-------------YTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTC 147 (303)
T ss_dssp ECCTTCBHHHHHHH-------------CCBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCCEECSCCCGGGEEECTTSCE
T ss_pred CCCCCCCHHHHHHH-------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCEEECCCCCE
T ss_conf 17899968999975-------------79998999999999999999999852400478987624678420899889978
Q ss_pred EEEECCCCCCCCCCCCC-CCCCCCCCCCCCCCCHHHHCCC------CCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHH
Q ss_conf 99522775679999987-6311233486554571323015------8896357898999999999499999898631000
Q 002533 699 KISDFGLSRMGPSGMSQ-SHVSTVVKGSFGYVDPEYIRRQ------QLTEKSDVYSFGVVLLEVLCGRPPMINGAVRKEE 771 (911)
Q Consensus 699 ki~DFGla~~~~~~~~~-~~~~~~~~gt~~y~APE~~~~~------~~s~ksDVwSfGviL~ElltG~~p~~~~~~~~~~ 771 (911)
||+|||+++........ ........||+.|||||++.+. .++.++|||||||+||||+||+.|+.........
T Consensus 148 Ki~DFGla~~~~~~~~~~~~~~~~~~GT~~ymAPE~l~~~~~~~~~~~~~k~DVwS~Gvvl~El~tg~~~~~~~~~~~~p 227 (303)
T 3hmm_A 148 CIADLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLP 227 (303)
T ss_dssp EECCCTTCEEEETTTTEESCC-----CCGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHTBCBTTBCCCCCCT
T ss_pred EEEECCCCCCCCCCCCCEEEECCCCCCCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 99847987455677773221046424664626988845654556776570676664799999998789987766522353
Q ss_pred --------HHHHHHHHHHCCCCCCCCCCCCCCCCCC-----CHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf --------3376677653025871000492112888-----948799999999844433599999988999999998964
Q 002533 772 --------VSLVLWARVSRARGTVDQIVDPRLRGKI-----APVCLNKFVEIAGSCTDEEGFRRPTMGDVTWGLEFALQL 838 (911)
Q Consensus 772 --------~~l~~~~~~~~~~~~~~~i~d~~l~~~~-----~~~~~~~l~~li~~Cl~~dP~~RPt~~eVl~~Le~~~~~ 838 (911)
....... ..+.+..++..+ ...++..+.+|+.+||+.||++||||.+|++.|+.+.+.
T Consensus 228 ~~~~~~~~~~~~~~~---------~~~~~~~~rp~~p~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~ei~~~L~~l~~~ 298 (303)
T 3hmm_A 228 YYDLVPSDPSVEEMR---------KVVCEQKLRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQQ 298 (303)
T ss_dssp TTTTSCSSCCHHHHH---------HHHTTSCCCCCCCGGGGSSHHHHHHHHHHHTTCCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred CHHCCCCCCHHHHHH---------HHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHH
T ss_conf 100254543099999---------98750257998876556658999999999997605975795999999999988987
Done!