Query 002535
Match_columns 911
No_of_seqs 366 out of 1804
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 01:57:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002535.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002535hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03088 stp2 sugar transfera 100.0 3.3E-35 7.3E-40 330.3 37.4 358 144-529 1-374 (374)
2 PRK15179 Vi polysaccharide bio 100.0 6.1E-34 1.3E-38 342.1 37.9 424 57-526 206-692 (694)
3 TIGR03449 mycothiol_MshA UDP-N 100.0 1.4E-33 3.1E-38 320.8 35.3 352 156-530 19-404 (405)
4 cd04962 GT1_like_5 This family 100.0 1.4E-33 3.1E-38 314.6 33.8 350 145-528 1-371 (371)
5 PLN02871 UDP-sulfoquinovose:DA 100.0 5.4E-33 1.2E-37 323.6 36.6 353 142-531 56-438 (465)
6 cd03796 GT1_PIG-A_like This fa 100.0 6.6E-33 1.4E-37 316.0 36.4 346 146-531 1-371 (398)
7 TIGR02472 sucr_P_syn_N sucrose 100.0 4.7E-33 1E-37 321.9 35.1 354 151-525 20-438 (439)
8 cd03819 GT1_WavL_like This fam 100.0 2E-32 4.4E-37 302.7 34.9 333 149-516 2-354 (355)
9 PRK10307 putative glycosyl tra 100.0 2.8E-32 6E-37 311.8 36.3 361 145-530 1-410 (412)
10 cd03807 GT1_WbnK_like This fam 100.0 2.6E-32 5.7E-37 297.5 33.6 350 146-526 1-365 (365)
11 PRK15427 colanic acid biosynth 100.0 3.1E-32 6.7E-37 312.3 35.0 342 145-527 1-405 (406)
12 cd04951 GT1_WbdM_like This fam 100.0 4.2E-32 9.1E-37 299.9 33.9 344 146-526 1-359 (360)
13 cd03792 GT1_Trehalose_phosphor 100.0 9.1E-32 2E-36 303.3 35.8 346 146-527 1-371 (372)
14 TIGR02149 glgA_Coryne glycogen 100.0 1E-31 2.2E-36 302.6 34.6 355 145-529 1-388 (388)
15 PRK00654 glgA glycogen synthas 100.0 1.8E-31 3.8E-36 311.2 34.3 359 145-530 1-465 (466)
16 cd03805 GT1_ALG2_like This fam 100.0 2.3E-31 4.9E-36 300.2 33.8 350 145-520 1-391 (392)
17 PRK15484 lipopolysaccharide 1, 100.0 3.9E-31 8.5E-36 300.4 35.5 329 153-529 17-379 (380)
18 TIGR02468 sucrsPsyn_pln sucros 100.0 4.5E-31 9.8E-36 322.7 37.7 369 141-531 166-674 (1050)
19 cd03812 GT1_CapH_like This fam 100.0 6.9E-31 1.5E-35 290.9 32.0 333 146-509 1-346 (358)
20 PRK15490 Vi polysaccharide bio 100.0 1.4E-30 3.1E-35 301.4 35.0 345 146-527 163-575 (578)
21 cd03821 GT1_Bme6_like This fam 100.0 7.8E-31 1.7E-35 287.0 31.0 351 146-522 1-374 (375)
22 cd03820 GT1_amsD_like This fam 100.0 3.9E-30 8.5E-35 278.0 35.2 332 146-522 1-347 (348)
23 PLN02939 transferase, transfer 100.0 5.4E-30 1.2E-34 309.1 39.1 366 142-531 479-970 (977)
24 PLN02316 synthase/transferase 100.0 4E-30 8.6E-35 315.3 38.1 354 141-530 584-1036(1036)
25 TIGR02095 glgA glycogen/starch 100.0 3.6E-30 7.9E-35 300.4 35.3 357 145-528 1-473 (473)
26 TIGR02470 sucr_synth sucrose s 100.0 5.3E-30 1.1E-34 308.2 36.6 360 143-525 254-745 (784)
27 cd03800 GT1_Sucrose_synthase T 100.0 2.2E-30 4.9E-35 290.9 31.4 347 154-522 18-397 (398)
28 cd03818 GT1_ExpC_like This fam 100.0 2.4E-30 5.3E-35 294.5 32.0 347 146-522 1-395 (396)
29 PRK14099 glycogen synthase; Pr 100.0 6.3E-30 1.4E-34 299.3 34.7 362 143-530 2-481 (485)
30 cd05844 GT1_like_7 Glycosyltra 100.0 3.9E-30 8.3E-35 286.6 31.3 338 147-523 2-366 (367)
31 cd03825 GT1_wcfI_like This fam 100.0 6.7E-30 1.5E-34 282.9 31.8 334 145-528 1-365 (365)
32 cd03808 GT1_cap1E_like This fa 100.0 1.8E-29 4E-34 273.9 34.6 339 146-522 1-358 (359)
33 cd03814 GT1_like_2 This family 100.0 1.3E-29 2.8E-34 278.2 33.2 347 146-526 1-364 (364)
34 cd03817 GT1_UGDG_like This fam 100.0 3.2E-29 7E-34 274.6 34.7 352 146-527 1-373 (374)
35 PRK09922 UDP-D-galactose:(gluc 100.0 9.1E-30 2E-34 286.3 30.9 336 145-530 1-358 (359)
36 cd03822 GT1_ecORF704_like This 100.0 2.6E-29 5.6E-34 276.6 33.6 347 146-526 1-366 (366)
37 PRK10125 putative glycosyl tra 100.0 5E-30 1.1E-34 294.0 28.3 337 145-528 1-405 (405)
38 cd03791 GT1_Glycogen_synthase_ 100.0 2.7E-29 5.9E-34 292.5 33.8 357 146-526 1-475 (476)
39 cd03813 GT1_like_3 This family 100.0 7.1E-30 1.5E-34 298.4 28.4 284 214-526 172-475 (475)
40 cd03801 GT1_YqgM_like This fam 100.0 6.3E-29 1.4E-33 269.1 33.2 352 146-526 1-374 (374)
41 cd03795 GT1_like_4 This family 100.0 4.8E-29 1E-33 275.2 31.6 337 146-518 1-357 (357)
42 cd03811 GT1_WabH_like This fam 100.0 4.3E-29 9.3E-34 269.8 30.4 332 146-513 1-352 (353)
43 cd03799 GT1_amsK_like This is 100.0 4.2E-29 9.2E-34 275.4 30.3 331 146-520 1-354 (355)
44 cd03802 GT1_AviGT4_like This f 100.0 5.6E-29 1.2E-33 273.0 30.7 314 145-526 1-335 (335)
45 PLN00142 sucrose synthase 100.0 5.8E-29 1.3E-33 299.3 33.3 353 153-525 299-768 (815)
46 cd04955 GT1_like_6 This family 100.0 1.4E-28 3.1E-33 272.5 34.0 340 146-526 1-363 (363)
47 PRK14098 glycogen synthase; Pr 100.0 1.8E-28 3.9E-33 287.3 35.7 361 143-530 4-488 (489)
48 cd03798 GT1_wlbH_like This fam 100.0 1.8E-28 3.9E-33 266.9 31.2 346 148-528 2-377 (377)
49 cd03794 GT1_wbuB_like This fam 100.0 2E-28 4.3E-33 268.7 31.0 351 146-521 1-393 (394)
50 cd03823 GT1_ExpE7_like This fa 100.0 2E-28 4.3E-33 267.9 30.4 326 146-526 1-358 (359)
51 PLN02949 transferase, transfer 100.0 5.9E-28 1.3E-32 280.7 34.6 361 142-531 31-460 (463)
52 cd03809 GT1_mtfB_like This fam 100.0 1.3E-28 2.8E-33 270.9 26.8 343 146-522 1-364 (365)
53 cd03816 GT1_ALG1_like This fam 100.0 1.5E-27 3.2E-32 274.3 33.1 348 145-509 4-399 (415)
54 PLN02846 digalactosyldiacylgly 100.0 4.1E-27 8.9E-32 271.3 32.9 340 143-528 3-392 (462)
55 cd03806 GT1_ALG11_like This fa 100.0 4.5E-27 9.8E-32 270.7 32.6 345 146-518 2-417 (419)
56 TIGR02918 accessory Sec system 100.0 1.1E-26 2.4E-31 272.4 27.3 277 212-528 208-500 (500)
57 TIGR03087 stp1 sugar transfera 99.9 1E-25 2.2E-30 256.9 29.6 332 155-526 12-395 (397)
58 cd04946 GT1_AmsK_like This fam 99.9 3.2E-25 6.8E-30 254.4 33.5 338 147-522 2-406 (407)
59 KOG1111 N-acetylglucosaminyltr 99.9 8E-26 1.7E-30 243.7 22.4 344 146-531 2-370 (426)
60 PLN02501 digalactosyldiacylgly 99.9 2.4E-24 5.2E-29 251.9 32.4 337 144-524 322-706 (794)
61 cd03804 GT1_wbaZ_like This fam 99.9 1.5E-24 3.2E-29 242.0 26.5 319 146-521 1-350 (351)
62 cd04949 GT1_gtfA_like This fam 99.9 7.7E-25 1.7E-29 245.9 23.3 271 214-521 98-372 (372)
63 PRK00726 murG undecaprenyldiph 99.9 9.6E-24 2.1E-28 236.8 28.7 322 145-526 2-356 (357)
64 PHA01630 putative group 1 glyc 99.9 1.6E-23 3.5E-28 234.1 27.0 287 163-527 16-330 (331)
65 PLN02275 transferase, transfer 99.9 2.9E-23 6.3E-28 235.2 28.2 308 156-489 14-371 (371)
66 cd03785 GT1_MurG MurG is an N- 99.9 4.5E-23 9.8E-28 229.7 26.6 313 150-519 3-349 (350)
67 TIGR01133 murG undecaprenyldip 99.9 3.7E-22 8.1E-27 222.1 25.6 314 146-519 2-346 (348)
68 PRK05749 3-deoxy-D-manno-octul 99.9 4.5E-22 9.8E-27 229.1 26.5 338 157-529 60-421 (425)
69 PHA01633 putative glycosyl tra 99.9 4.9E-21 1.1E-25 213.4 27.5 303 154-522 8-334 (335)
70 PF00534 Glycos_transf_1: Glyc 99.9 1E-21 2.3E-26 196.9 18.7 167 321-508 2-172 (172)
71 PRK13609 diacylglycerol glucos 99.9 1.5E-20 3.3E-25 213.1 27.0 333 143-528 3-372 (380)
72 cd03788 GT1_TPS Trehalose-6-Ph 99.9 1.8E-21 3.8E-26 227.0 19.1 290 215-523 131-457 (460)
73 cd03793 GT1_Glycogen_synthase_ 99.9 1.5E-20 3.3E-25 218.5 26.1 303 214-530 147-589 (590)
74 KOG0853 Glycosyltransferase [C 99.8 9.7E-20 2.1E-24 208.1 25.1 370 144-529 34-469 (495)
75 TIGR02400 trehalose_OtsA alpha 99.8 1.2E-19 2.5E-24 211.0 25.3 285 215-525 127-454 (456)
76 PRK13608 diacylglycerol glucos 99.8 6.4E-19 1.4E-23 201.4 26.0 336 143-531 4-375 (391)
77 cd01635 Glycosyltransferase_GT 99.8 8.2E-19 1.8E-23 179.9 23.4 222 148-473 2-229 (229)
78 PLN02605 monogalactosyldiacylg 99.8 6.2E-19 1.3E-23 200.7 22.8 271 207-525 92-379 (382)
79 COG0297 GlgA Glycogen synthase 99.8 9.4E-18 2E-22 194.3 31.9 357 154-533 14-483 (487)
80 PLN03063 alpha,alpha-trehalose 99.8 6.2E-18 1.3E-22 208.0 21.3 297 215-530 147-480 (797)
81 cd04950 GT1_like_1 Glycosyltra 99.8 2.1E-16 4.5E-21 179.4 27.8 333 146-527 5-371 (373)
82 PRK14501 putative bifunctional 99.7 4.4E-17 9.6E-22 200.0 20.6 288 215-530 133-465 (726)
83 TIGR00236 wecB UDP-N-acetylglu 99.7 4.5E-16 9.7E-21 175.8 24.4 335 146-521 2-361 (365)
84 COG0438 RfaG Glycosyltransfera 99.7 1.3E-14 2.8E-19 154.7 33.5 176 335-530 200-379 (381)
85 PRK00025 lpxB lipid-A-disaccha 99.7 6.7E-16 1.5E-20 174.7 22.5 334 146-528 3-374 (380)
86 KOG1387 Glycosyltransferase [C 99.6 5.3E-14 1.2E-18 151.7 27.1 366 138-532 37-463 (465)
87 TIGR02398 gluc_glyc_Psyn gluco 99.6 2.1E-14 4.6E-19 167.1 26.0 207 300-526 250-481 (487)
88 cd03786 GT1_UDP-GlcNAc_2-Epime 99.6 1.4E-14 3E-19 162.5 23.5 297 162-502 14-345 (363)
89 PRK09814 beta-1,6-galactofuran 99.6 3E-13 6.4E-18 151.6 27.6 286 155-513 13-317 (333)
90 PF13692 Glyco_trans_1_4: Glyc 99.5 1.5E-14 3.2E-19 139.4 9.6 131 335-491 3-135 (135)
91 TIGR03713 acc_sec_asp1 accesso 99.5 1.1E-13 2.4E-18 163.3 17.7 165 336-525 321-519 (519)
92 PLN03064 alpha,alpha-trehalose 99.5 4.6E-13 9.9E-18 165.1 23.2 291 215-529 231-563 (934)
93 TIGR00215 lpxB lipid-A-disacch 99.5 2.1E-12 4.5E-17 147.8 26.4 321 145-512 6-369 (385)
94 KOG2941 Beta-1,4-mannosyltrans 99.5 4.6E-11 1E-15 129.5 32.1 350 141-515 10-429 (444)
95 COG0707 MurG UDP-N-acetylgluco 99.4 4.1E-11 8.9E-16 135.3 25.9 317 149-522 3-352 (357)
96 PRK12446 undecaprenyldiphospho 99.3 2.3E-10 4.9E-15 129.6 25.9 292 149-498 4-329 (352)
97 PF13524 Glyco_trans_1_2: Glyc 99.2 1.3E-10 2.7E-15 105.7 9.6 90 426-522 1-91 (92)
98 PF05693 Glycogen_syn: Glycoge 99.1 4.7E-09 1E-13 122.7 19.3 111 416-530 462-584 (633)
99 TIGR02919 accessory Sec system 99.0 5.1E-09 1.1E-13 121.5 15.5 133 354-509 291-426 (438)
100 COG1519 KdtA 3-deoxy-D-manno-o 99.0 2.9E-07 6.2E-12 104.1 28.3 320 158-511 60-403 (419)
101 PRK10117 trehalose-6-phosphate 98.9 7.9E-08 1.7E-12 111.8 22.6 290 215-530 123-456 (474)
102 PF00982 Glyco_transf_20: Glyc 98.9 9.9E-08 2.2E-12 111.8 22.8 289 214-526 140-473 (474)
103 TIGR02094 more_P_ylases alpha- 98.9 9.2E-08 2E-12 115.0 20.0 183 330-525 385-598 (601)
104 TIGR03590 PseG pseudaminic aci 98.8 4.7E-07 1E-11 99.5 21.8 251 152-458 8-269 (279)
105 TIGR03492 conserved hypothetic 98.7 2E-06 4.4E-11 99.1 25.5 169 329-521 200-392 (396)
106 COG0380 OtsA Trehalose-6-phosp 98.7 7.7E-07 1.7E-11 103.3 21.8 289 215-527 147-479 (486)
107 PLN02205 alpha,alpha-trehalose 98.7 1.3E-06 2.9E-11 108.8 22.4 288 217-528 203-552 (854)
108 TIGR01426 MGT glycosyltransfer 98.7 9.4E-06 2E-10 92.9 27.4 111 403-524 273-389 (392)
109 PF13439 Glyco_transf_4: Glyco 98.6 2.5E-08 5.4E-13 98.7 4.9 157 152-313 7-176 (177)
110 cd03784 GT1_Gtf_like This fami 98.6 4.9E-05 1.1E-09 87.1 29.6 82 402-491 285-372 (401)
111 TIGR03568 NeuC_NnaA UDP-N-acet 98.6 5E-06 1.1E-10 94.9 21.1 245 207-491 85-338 (365)
112 PF13579 Glyco_trans_4_4: Glyc 98.5 2.4E-07 5.3E-12 90.0 8.5 143 157-305 1-159 (160)
113 TIGR00661 MJ1255 conserved hyp 98.4 3.3E-05 7.2E-10 86.3 21.8 78 407-491 230-314 (321)
114 PF13844 Glyco_transf_41: Glyc 98.4 1.3E-05 2.7E-10 93.3 18.5 182 324-528 275-467 (468)
115 PF13528 Glyco_trans_1_3: Glyc 98.4 4.9E-05 1.1E-09 84.1 22.6 118 332-488 191-317 (318)
116 cd04299 GT1_Glycogen_Phosphory 98.3 1.3E-05 2.7E-10 98.8 18.6 185 330-525 474-687 (778)
117 PF04007 DUF354: Protein of un 98.3 0.00015 3.3E-09 81.7 25.4 277 158-491 11-310 (335)
118 COG3914 Spy Predicted O-linked 98.3 6.7E-05 1.4E-09 87.4 22.4 332 142-530 257-616 (620)
119 PF13477 Glyco_trans_4_2: Glyc 98.2 4E-05 8.8E-10 74.2 14.0 100 146-252 1-111 (139)
120 COG0763 LpxB Lipid A disacchar 98.0 0.0007 1.5E-08 76.4 22.0 317 145-508 2-358 (381)
121 COG3980 spsG Spore coat polysa 98.0 0.00069 1.5E-08 73.2 20.7 293 145-505 1-304 (318)
122 PF02350 Epimerase_2: UDP-N-ac 98.0 4.1E-05 8.9E-10 86.8 12.0 255 207-501 59-325 (346)
123 COG0381 WecB UDP-N-acetylgluco 98.0 0.00037 8E-09 78.8 18.8 339 144-524 3-371 (383)
124 PHA03392 egt ecdysteroid UDP-g 98.0 0.0086 1.9E-07 71.5 31.2 164 332-532 295-468 (507)
125 PRK01021 lpxB lipid-A-disaccha 98.0 0.0028 6E-08 75.9 26.7 318 141-510 223-587 (608)
126 PF02684 LpxB: Lipid-A-disacch 98.0 0.00045 9.7E-09 79.0 19.4 296 159-500 10-346 (373)
127 COG4641 Uncharacterized protei 97.9 0.0018 3.9E-08 72.8 23.1 327 155-528 12-362 (373)
128 COG1819 Glycosyl transferases, 97.9 0.0011 2.4E-08 76.9 21.1 127 377-524 266-398 (406)
129 PRK02797 4-alpha-L-fucosyltran 97.8 0.0026 5.7E-08 70.1 20.9 169 334-530 145-319 (322)
130 COG1817 Uncharacterized protei 97.7 0.0085 1.8E-07 65.8 23.6 279 158-491 11-314 (346)
131 PF07429 Glyco_transf_56: 4-al 97.3 0.035 7.7E-07 62.2 22.4 283 198-527 57-355 (360)
132 PRK14089 ipid-A-disaccharide s 97.2 0.022 4.8E-07 64.8 19.7 95 333-456 167-261 (347)
133 PF04101 Glyco_tran_28_C: Glyc 97.2 2.6E-05 5.6E-10 78.6 -4.2 89 407-504 56-154 (167)
134 PF04464 Glyphos_transf: CDP-G 97.1 0.023 5E-07 64.7 19.1 309 141-491 10-336 (369)
135 PF09314 DUF1972: Domain of un 97.1 0.011 2.3E-07 61.3 14.1 109 145-253 2-131 (185)
136 KOG3742 Glycogen synthase [Car 96.8 0.0089 1.9E-07 67.9 11.5 108 416-529 493-614 (692)
137 PF08323 Glyco_transf_5: Starc 96.8 0.0056 1.2E-07 66.2 9.9 40 146-185 1-44 (245)
138 COG4671 Predicted glycosyl tra 96.7 0.42 9.2E-06 53.8 23.2 104 378-491 253-365 (400)
139 COG3660 Predicted nucleoside-d 96.6 0.31 6.6E-06 52.8 20.4 256 156-459 10-275 (329)
140 PF11440 AGT: DNA alpha-glucos 95.9 1.3 2.8E-05 48.5 20.7 302 158-491 2-353 (355)
141 PRK10017 colanic acid biosynth 95.8 5.7 0.00012 46.7 28.6 96 391-499 293-397 (426)
142 PF06258 Mito_fiss_Elm1: Mitoc 95.5 1.3 2.8E-05 49.8 20.2 242 158-459 2-259 (311)
143 KOG4626 O-linked N-acetylgluco 95.0 0.76 1.7E-05 54.8 16.6 184 324-531 749-944 (966)
144 PLN02448 UDP-glycosyltransfera 94.4 0.75 1.6E-05 54.5 15.3 130 332-491 273-415 (459)
145 PLN02670 transferase, transfer 94.2 0.62 1.3E-05 55.4 13.9 111 408-527 341-465 (472)
146 cd03789 GT1_LPS_heptosyltransf 93.4 7.2 0.00016 42.6 19.7 90 352-461 138-229 (279)
147 KOG1050 Trehalose-6-phosphate 92.5 7 0.00015 48.9 19.5 186 300-503 241-449 (732)
148 PLN03004 UDP-glycosyltransfera 92.3 1.3 2.9E-05 52.3 12.7 80 407-491 335-424 (451)
149 PLN02208 glycosyltransferase f 92.0 4.2 9.2E-05 48.0 16.3 94 407-508 312-416 (442)
150 PLN02210 UDP-glucosyl transfer 92.0 3.1 6.8E-05 49.3 15.3 106 408-521 326-449 (456)
151 PLN02410 UDP-glucoronosyl/UDP- 91.8 3 6.5E-05 49.4 14.8 80 407-491 325-410 (451)
152 PLN02562 UDP-glycosyltransfera 91.7 3.5 7.7E-05 48.7 15.3 86 407-500 329-419 (448)
153 PLN02764 glycosyltransferase f 91.0 7.2 0.00016 46.3 16.8 113 408-528 319-446 (453)
154 PF00201 UDPGT: UDP-glucoronos 90.9 1.1 2.3E-05 53.3 10.1 80 407-491 324-409 (500)
155 PLN02863 UDP-glucoronosyl/UDP- 90.6 5.3 0.00011 47.7 15.3 111 407-526 344-470 (477)
156 COG0859 RfaF ADP-heptose:LPS h 89.3 44 0.00095 37.8 22.1 101 333-456 175-277 (334)
157 PLN02173 UDP-glucosyl transfer 89.0 7.5 0.00016 46.1 14.9 80 407-491 318-408 (449)
158 TIGR02195 heptsyl_trn_II lipop 89.0 3.5 7.6E-05 46.3 11.8 113 322-456 162-277 (334)
159 PF10933 DUF2827: Protein of u 89.0 48 0.001 38.0 20.3 326 153-523 14-361 (364)
160 PLN02152 indole-3-acetate beta 88.9 5.9 0.00013 47.0 14.0 80 407-491 328-417 (455)
161 PLN00414 glycosyltransferase f 88.1 9.1 0.0002 45.3 14.8 93 408-510 314-419 (446)
162 PF05159 Capsule_synth: Capsul 87.9 4 8.7E-05 44.5 11.0 88 352-456 138-225 (269)
163 PLN03007 UDP-glucosyltransfera 87.9 13 0.00029 44.3 16.2 80 407-491 346-440 (482)
164 PF04230 PS_pyruv_trans: Polys 87.5 40 0.00088 35.3 19.3 36 415-457 249-284 (286)
165 PLN02167 UDP-glycosyltransfera 87.3 11 0.00024 44.9 15.1 78 407-491 341-434 (475)
166 PF10087 DUF2325: Uncharacteri 86.9 1 2.2E-05 41.6 4.8 81 379-463 2-89 (97)
167 COG0058 GlgP Glucan phosphoryl 86.9 4.6 9.9E-05 50.2 11.5 140 330-476 483-631 (750)
168 PLN02207 UDP-glycosyltransfera 84.2 15 0.00032 43.8 13.9 111 407-523 333-461 (468)
169 PF01075 Glyco_transf_9: Glyco 84.0 4.6 0.0001 43.0 8.9 105 331-456 103-209 (247)
170 PLN02555 limonoid glucosyltran 83.9 23 0.0005 42.3 15.4 78 407-491 338-429 (480)
171 PLN00164 glucosyltransferase; 83.9 4.2 9E-05 48.6 9.3 79 408-491 341-431 (480)
172 PF00343 Phosphorylase: Carboh 83.9 27 0.00059 43.5 16.1 139 330-475 440-596 (713)
173 PF15024 Glyco_transf_18: Glyc 83.8 4.7 0.0001 48.4 9.4 98 414-528 332-456 (559)
174 PRK10422 lipopolysaccharide co 83.8 16 0.00035 41.4 13.7 104 333-456 183-288 (352)
175 PRK14985 maltodextrin phosphor 83.5 8.6 0.00019 48.2 11.8 138 330-475 525-681 (798)
176 PLN02554 UDP-glycosyltransfera 83.2 14 0.0003 44.1 13.3 93 407-509 343-459 (481)
177 PRK10916 ADP-heptose:LPS hepto 82.8 8.3 0.00018 43.7 10.8 113 324-456 170-287 (348)
178 PRK14986 glycogen phosphorylas 82.4 6.6 0.00014 49.3 10.3 146 330-484 539-703 (815)
179 TIGR03609 S_layer_CsaB polysac 80.9 94 0.002 34.2 18.6 85 353-456 190-276 (298)
180 cd04300 GT1_Glycogen_Phosphory 80.3 9.8 0.00021 47.9 10.8 144 330-483 526-689 (797)
181 PLN02992 coniferyl-alcohol glu 78.3 11 0.00024 45.1 10.1 80 407-491 339-427 (481)
182 TIGR02093 P_ylase glycogen/sta 78.0 9.4 0.0002 47.9 9.6 146 330-484 523-687 (794)
183 TIGR02193 heptsyl_trn_I lipopo 76.8 22 0.00047 39.6 11.5 100 332-456 178-280 (319)
184 TIGR02201 heptsyl_trn_III lipo 73.5 22 0.00047 40.1 10.5 104 333-456 181-286 (344)
185 PF03016 Exostosin: Exostosin 72.3 3.7 8E-05 45.1 3.8 70 415-486 228-300 (302)
186 PLN02534 UDP-glycosyltransfera 70.8 1.7E+02 0.0037 35.3 17.5 79 407-490 345-443 (491)
187 KOG1192 UDP-glucuronosyl and U 70.7 95 0.0021 36.6 15.5 109 407-523 336-451 (496)
188 PF12038 DUF3524: Domain of un 69.0 21 0.00046 36.6 8.0 120 152-284 7-126 (168)
189 KOG2884 26S proteasome regulat 68.2 71 0.0015 34.1 11.7 120 334-491 108-229 (259)
190 PF00862 Sucrose_synth: Sucros 67.7 30 0.00066 41.3 10.0 34 214-249 400-433 (550)
191 PRK10964 ADP-heptose:LPS hepto 66.8 28 0.0006 38.9 9.4 101 333-458 178-281 (322)
192 PF08660 Alg14: Oligosaccharid 60.2 12 0.00027 38.3 4.6 90 155-246 6-127 (170)
193 KOG1021 Acetylglucosaminyltran 59.8 75 0.0016 37.9 11.7 111 375-491 289-409 (464)
194 COG1887 TagB Putative glycosyl 58.7 3.5E+02 0.0076 31.5 19.7 75 408-491 271-353 (388)
195 TIGR01012 Sa_S2_E_A ribosomal 58.3 1.2E+02 0.0027 32.0 11.6 121 353-491 46-170 (196)
196 PF11071 DUF2872: Protein of u 58.3 36 0.00077 33.5 6.9 69 418-489 67-140 (141)
197 KOG0780 Signal recognition par 57.7 30 0.00065 40.0 7.3 108 112-224 70-192 (483)
198 COG2247 LytB Putative cell wal 54.7 60 0.0013 36.6 8.9 84 360-458 68-164 (337)
199 KOG0832 Mitochondrial/chloropl 54.7 1.8E+02 0.004 31.4 12.0 59 425-491 175-235 (251)
200 PRK04020 rps2P 30S ribosomal p 51.6 1.8E+02 0.0039 30.9 11.6 123 351-491 50-176 (204)
201 PLN03015 UDP-glucosyl transfer 50.4 28 0.00061 41.5 6.1 78 408-490 337-425 (470)
202 TIGR02069 cyanophycinase cyano 48.4 97 0.0021 33.8 9.4 99 352-460 12-127 (250)
203 PF03033 Glyco_transf_28: Glyc 47.2 35 0.00075 32.7 5.2 51 152-204 4-54 (139)
204 PRK10360 DNA-binding transcrip 46.0 2.1E+02 0.0046 28.4 11.0 67 424-491 48-118 (196)
205 cd03146 GAT1_Peptidase_E Type 44.9 88 0.0019 33.0 8.2 81 377-459 32-124 (212)
206 PF03853 YjeF_N: YjeF-related 44.2 53 0.0012 33.5 6.2 41 141-184 22-62 (169)
207 PF04413 Glycos_transf_N: 3-De 43.9 1.7E+02 0.0037 30.4 10.0 87 157-245 31-123 (186)
208 PF05686 Glyco_transf_90: Glyc 42.9 86 0.0019 36.6 8.4 92 434-528 222-318 (395)
209 PTZ00254 40S ribosomal protein 41.8 1.8E+02 0.004 31.8 10.0 104 378-491 73-180 (249)
210 TIGR03646 YtoQ_fam YtoQ family 41.7 93 0.002 30.8 6.9 102 385-489 8-143 (144)
211 PRK13940 glutamyl-tRNA reducta 41.7 1.2E+02 0.0026 35.7 9.4 72 378-463 207-278 (414)
212 KOG3349 Predicted glycosyltran 41.7 92 0.002 31.6 7.1 42 408-455 63-106 (170)
213 PRK10840 transcriptional regul 41.1 2.7E+02 0.0058 28.7 11.1 112 377-491 4-126 (216)
214 PF10093 DUF2331: Uncharacteri 40.5 2.1E+02 0.0045 33.3 10.7 108 321-456 168-289 (374)
215 TIGR02026 BchE magnesium-proto 39.5 1E+02 0.0022 37.0 8.6 86 146-246 1-98 (497)
216 PRK13011 formyltetrahydrofolat 39.4 1.3E+02 0.0028 33.6 8.8 102 140-250 85-196 (286)
217 TIGR02896 spore_III_AF stage I 39.0 30 0.00065 32.9 3.1 25 50-74 4-28 (106)
218 PF03401 TctC: Tripartite tric 38.5 3E+02 0.0065 30.2 11.5 143 335-505 79-243 (274)
219 PRK13396 3-deoxy-7-phosphohept 38.4 2.8E+02 0.0061 32.0 11.3 124 333-491 99-234 (352)
220 PF06925 MGDG_synth: Monogalac 37.4 55 0.0012 33.1 5.1 43 206-248 80-124 (169)
221 PRK00676 hemA glutamyl-tRNA re 37.0 3.9E+02 0.0084 30.7 12.1 130 377-527 175-318 (338)
222 cd05565 PTS_IIB_lactose PTS_II 36.3 54 0.0012 30.7 4.4 74 380-456 5-79 (99)
223 PRK05282 (alpha)-aspartyl dipe 36.0 1.8E+02 0.0038 31.6 8.9 80 377-460 32-124 (233)
224 COG0541 Ffh Signal recognition 35.3 1.1E+02 0.0023 36.2 7.4 81 142-223 97-190 (451)
225 cd06310 PBP1_ABC_sugar_binding 34.7 2E+02 0.0043 30.4 9.2 37 146-182 1-37 (273)
226 PF01408 GFO_IDH_MocA: Oxidore 34.7 1.9E+02 0.0041 26.8 8.0 66 377-456 26-93 (120)
227 cd06315 PBP1_ABC_sugar_binding 34.6 2.3E+02 0.005 30.5 9.8 86 146-246 2-87 (280)
228 cd06318 PBP1_ABC_sugar_binding 34.2 1.6E+02 0.0034 31.4 8.3 84 146-247 1-87 (282)
229 cd06305 PBP1_methylthioribose_ 34.2 2E+02 0.0044 30.3 9.1 86 146-246 1-86 (273)
230 PF12000 Glyco_trans_4_3: Gkyc 34.2 1.5E+02 0.0032 30.6 7.6 29 214-245 65-93 (171)
231 PF00532 Peripla_BP_1: Peripla 34.0 2.6E+02 0.0056 30.6 10.1 85 145-248 2-87 (279)
232 PF00072 Response_reg: Respons 33.8 1.9E+02 0.0041 25.9 7.7 93 391-486 11-112 (112)
233 PF08465 Herpes_TK_C: Thymidin 33.5 26 0.00056 26.3 1.4 22 632-653 4-25 (33)
234 smart00672 CAP10 Putative lipo 33.5 3.1E+02 0.0067 30.1 10.4 90 434-527 153-248 (256)
235 TIGR00853 pts-lac PTS system, 33.1 59 0.0013 30.1 4.0 76 377-457 4-83 (95)
236 cd03145 GAT1_cyanophycinase Ty 32.8 2.3E+02 0.0049 30.1 9.1 84 377-460 30-128 (217)
237 PF08288 PIGA: PIGA (GPI ancho 32.6 51 0.0011 30.4 3.4 43 207-249 42-84 (90)
238 cd06306 PBP1_TorT-like TorT-li 32.3 2.3E+02 0.0049 30.2 9.2 87 146-246 1-87 (268)
239 cd06320 PBP1_allose_binding Pe 32.1 2.2E+02 0.0048 30.2 9.1 38 146-183 1-38 (275)
240 cd06300 PBP1_ABC_sugar_binding 32.0 2.3E+02 0.0049 30.1 9.1 86 146-246 1-91 (272)
241 cd03129 GAT1_Peptidase_E_like 31.9 2.2E+02 0.0047 29.9 8.7 84 377-460 30-125 (210)
242 cd06296 PBP1_CatR_like Ligand- 31.5 6.3E+02 0.014 26.5 15.9 85 147-248 2-86 (270)
243 cd05564 PTS_IIB_chitobiose_lic 31.5 73 0.0016 29.4 4.4 73 379-456 3-78 (96)
244 TIGR00064 ftsY signal recognit 30.8 2.8E+02 0.006 30.6 9.6 42 142-184 69-110 (272)
245 PF10649 DUF2478: Protein of u 30.2 67 0.0015 32.8 4.2 40 417-456 86-130 (159)
246 PRK12585 putative monovalent c 30.1 37 0.00081 35.5 2.4 18 615-632 126-143 (197)
247 PRK06027 purU formyltetrahydro 29.4 2E+02 0.0042 32.2 8.1 102 140-250 85-196 (286)
248 PRK13398 3-deoxy-7-phosphohept 29.3 6.4E+02 0.014 27.9 12.0 102 336-456 28-141 (266)
249 COG0373 HemA Glutamyl-tRNA red 29.2 1E+03 0.022 28.2 17.1 94 378-483 204-302 (414)
250 PF01113 DapB_N: Dihydrodipico 28.9 49 0.0011 31.9 2.9 44 415-460 59-102 (124)
251 cd06302 PBP1_LsrB_Quorum_Sensi 28.9 2.1E+02 0.0047 31.1 8.4 88 146-247 1-88 (298)
252 PRK10867 signal recognition pa 28.8 2.3E+02 0.005 33.6 9.0 42 142-184 97-139 (433)
253 COG1663 LpxK Tetraacyldisaccha 28.5 1.5E+02 0.0031 34.0 6.9 45 142-186 43-89 (336)
254 TIGR02574 stabl_TIGR02574 puta 26.3 56 0.0012 27.9 2.5 27 621-647 30-62 (63)
255 PF02310 B12-binding: B12 bind 26.2 2.7E+02 0.0059 25.9 7.5 44 162-223 16-59 (121)
256 TIGR02955 TMAO_TorT TMAO reduc 26.2 3.2E+02 0.007 29.7 9.2 86 146-246 1-87 (295)
257 cd01574 PBP1_LacI Ligand-bindi 26.0 3.4E+02 0.0074 28.4 9.1 86 147-248 2-87 (264)
258 PRK13397 3-deoxy-7-phosphohept 26.0 5.6E+02 0.012 28.1 10.6 119 338-491 18-148 (250)
259 PF03358 FMN_red: NADPH-depend 25.8 1.6E+02 0.0034 28.8 6.1 41 145-185 1-42 (152)
260 PRK04155 chaperone protein Hch 25.8 4.8E+02 0.01 29.2 10.3 75 107-186 16-102 (287)
261 PRK09526 lacI lac repressor; R 25.4 4.4E+02 0.0095 29.1 10.2 89 143-246 62-150 (342)
262 PF11997 DUF3492: Domain of un 25.4 1.3E+02 0.0029 33.1 5.9 37 214-251 171-207 (268)
263 PF07302 AroM: AroM protein; 25.4 5.1E+02 0.011 28.0 9.9 132 103-245 59-207 (221)
264 PF10686 DUF2493: Protein of u 25.1 4.7E+02 0.01 22.9 8.1 57 334-405 3-60 (71)
265 TIGR01425 SRP54_euk signal rec 24.7 2.9E+02 0.0063 32.7 8.7 41 143-184 98-138 (429)
266 PRK13010 purU formyltetrahydro 24.7 2.7E+02 0.0059 31.1 8.2 102 140-250 89-200 (289)
267 TIGR00655 PurU formyltetrahydr 24.2 3.7E+02 0.008 29.9 9.1 101 141-250 81-191 (280)
268 TIGR03499 FlhF flagellar biosy 24.2 3.2E+02 0.007 30.2 8.7 80 144-224 193-281 (282)
269 TIGR03837 efp_adjacent_2 conse 24.2 5.9E+02 0.013 29.6 10.7 108 322-456 168-287 (371)
270 PF11623 DUF3252: Protein of u 23.8 46 0.00099 27.5 1.3 16 68-83 1-16 (53)
271 cd06284 PBP1_LacI_like_6 Ligan 23.6 5.7E+02 0.012 26.6 10.3 82 147-246 2-83 (267)
272 cd06297 PBP1_LacI_like_12 Liga 23.4 4.9E+02 0.011 27.6 9.8 84 147-247 2-85 (269)
273 PRK12311 rpsB 30S ribosomal pr 23.3 3.4E+02 0.0073 31.1 8.6 129 424-588 153-283 (326)
274 cd06354 PBP1_BmpA_PnrA_like Pe 23.1 5E+02 0.011 27.7 9.8 84 146-246 1-87 (265)
275 cd01575 PBP1_GntR Ligand-bindi 22.9 5.7E+02 0.012 26.6 10.1 82 147-246 2-84 (268)
276 PRK13302 putative L-aspartate 22.7 3E+02 0.0065 30.3 8.0 69 377-458 32-100 (271)
277 cd01080 NAD_bind_m-THF_DH_Cycl 22.5 2E+02 0.0044 29.4 6.2 51 376-433 44-97 (168)
278 PF01506 HCV_NS5a: Hepatitis C 22.4 85 0.0018 21.8 2.2 15 48-62 6-20 (23)
279 TIGR01761 thiaz-red thiazoliny 21.8 3.4E+02 0.0074 31.2 8.4 127 334-491 3-136 (343)
280 PRK05718 keto-hydroxyglutarate 21.7 4E+02 0.0086 28.5 8.3 80 357-454 54-133 (212)
281 PRK05562 precorrin-2 dehydroge 21.4 1E+03 0.023 25.6 12.0 76 377-464 49-125 (223)
282 cd06312 PBP1_ABC_sugar_binding 21.3 4.6E+02 0.0099 27.8 9.0 38 146-183 1-39 (271)
283 TIGR00715 precor6x_red precorr 21.3 4.2E+02 0.0091 29.1 8.7 85 397-489 166-255 (256)
284 PRK12726 flagellar biosynthesi 21.3 3.8E+02 0.0082 31.5 8.6 86 140-226 201-296 (407)
285 PRK10653 D-ribose transporter 21.2 5.6E+02 0.012 27.7 9.9 46 137-182 19-64 (295)
286 PRK09590 celB cellobiose phosp 21.1 1.6E+02 0.0034 27.9 4.6 73 379-456 5-82 (104)
287 cd05312 NAD_bind_1_malic_enz N 21.1 3.6E+02 0.0078 30.1 8.1 38 416-454 96-137 (279)
288 cd01542 PBP1_TreR_like Ligand- 21.0 7.7E+02 0.017 25.6 10.6 84 147-247 2-85 (259)
289 PRK09739 hypothetical protein; 21.0 4.2E+02 0.009 27.5 8.3 41 144-184 3-44 (199)
290 PRK10936 TMAO reductase system 21.0 6E+02 0.013 28.5 10.3 89 143-246 45-134 (343)
291 cd01967 Nitrogenase_MoFe_alpha 20.9 1.3E+03 0.028 26.6 13.2 120 350-491 135-258 (406)
292 cd06316 PBP1_ABC_sugar_binding 20.9 3.6E+02 0.0079 29.0 8.3 36 146-181 1-36 (294)
293 PRK09701 D-allose transporter 20.8 5.9E+02 0.013 27.9 10.0 40 142-181 22-61 (311)
294 PRK01372 ddl D-alanine--D-alan 20.7 2.8E+02 0.006 30.5 7.3 43 141-183 1-45 (304)
295 cd06293 PBP1_LacI_like_11 Liga 20.6 5E+02 0.011 27.3 9.1 83 147-247 2-85 (269)
296 PF01081 Aldolase: KDPG and KH 20.1 3.6E+02 0.0078 28.5 7.5 79 357-454 47-126 (196)
297 PRK10423 transcriptional repre 20.0 8.3E+02 0.018 26.6 11.0 88 143-246 55-142 (327)
No 1
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=100.00 E-value=3.3e-35 Score=330.32 Aligned_cols=358 Identities=15% Similarity=0.172 Sum_probs=264.9
Q ss_pred CCEEEEEeCCCCCChHHHHHHHHHHHHHHCCCeEEEEEeCC-CcchhhhhhcCceEEEeccc--------hhHHHhhhhc
Q 002535 144 KPQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLED-GRAHEVWRNIGVPVAILQTG--------REKASFVNWL 214 (911)
Q Consensus 144 kprIalI~~~L~~GGae~~v~~LAk~L~~~GyeV~V~t~~~-g~~~~~~~~~gi~v~~l~~~--------~~l~~lI~~~ 214 (911)
+|+|++|++++..||+|+++.++++.|.+.||++.+++..+ ++........++.+..++.. ..+.++++..
T Consensus 1 ~~~il~ii~~~~~GG~e~~~~~l~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~ 80 (374)
T TIGR03088 1 RPLIVHVVYRFDVGGLENGLVNLINHLPADRYRHAVVALTEVSAFRKRIQRPDVAFYALHKQPGKDVAVYPQLYRLLRQL 80 (374)
T ss_pred CceEEEEeCCCCCCcHHHHHHHHHhhccccccceEEEEcCCCChhHHHHHhcCceEEEeCCCCCCChHHHHHHHHHHHHh
Confidence 58999999999999999999999999999999998888654 33344445566666555432 2355667778
Q ss_pred CccEEEEcCcchhHHHHHHhhCCCCCCCE-EEEEcCchhhHHH-HHHHhhcchhhHhhHHHHHhhcceEEecCCcccc-c
Q 002535 215 NYDGILVNSLEAKVVISNIMQEPFKSLPL-VWTIHEGTLATRA-RNYASSGQLELLNDWKKVFNRATVVVFPDYVLPM-M 291 (911)
Q Consensus 215 kpDIIhvhs~~~~~~ia~L~~~~~~giPv-V~tiH~~~L~~~l-~k~~~~~~d~lIs~~~~~~~~a~~vvfpn~~l~i-i 291 (911)
+||+||+|+... ....++.. ..++|+ +++.|+....... ..+... . ..+.....++.++..+..... .
T Consensus 81 ~~Divh~~~~~~--~~~~~~~~-~~~~~~~i~~~h~~~~~~~~~~~~~~~----~--~~~~~~~~~~~~i~vs~~~~~~~ 151 (374)
T TIGR03088 81 RPDIVHTRNLAA--LEAQLPAA-LAGVPARIHGEHGRDVFDLDGSNWKYR----W--LRRLYRPLIHHYVAVSRDLEDWL 151 (374)
T ss_pred CCCEEEEcchhH--HHHHHHHH-hcCCCeEEEeecCcccccchhhHHHHH----H--HHHHHHhcCCeEEEeCHHHHHHH
Confidence 999999998654 22323322 334554 5566653221100 000000 0 001111233444444433111 1
Q ss_pred --cccCCCCCEEEeCCCCCCcccccccCchhhHHHHHhhCCCCCCeEEEEEEeccccccccccHHHHHHHHHHhhhhccc
Q 002535 292 --YSAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSV 369 (911)
Q Consensus 292 --~~~id~~ki~VIpg~gVD~~~f~~~~~~~k~~lR~~lgi~~d~~vIL~VGsrl~~~KGiKg~dlLLeAl~~L~~~~p~ 369 (911)
..++...++.+||+ |+|...|.+.... +...+++.....+.++++++| ++.+. ||++.+++|+..+.++.|+
T Consensus 152 ~~~~~~~~~~~~vi~n-gvd~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~vG-rl~~~---Kg~~~li~a~~~l~~~~~~ 225 (374)
T TIGR03088 152 RGPVKVPPAKIHQIYN-GVDTERFHPSRGD-RSPILPPDFFADESVVVGTVG-RLQAV---KDQPTLVRAFALLVRQLPE 225 (374)
T ss_pred HHhcCCChhhEEEecc-CccccccCCCccc-hhhhhHhhcCCCCCeEEEEEe-cCCcc---cCHHHHHHHHHHHHHhCcc
Confidence 12345678889994 9988554432211 222233334456778999999 55555 9999999999999877653
Q ss_pred CCCCCCCEEEEEEe-CCCCCchHHHHHHHHHHcCCCCccEEEccccccHHHHHHHcCeeEEcccCCcCCccHHHHHHHHc
Q 002535 370 ENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCF 448 (911)
Q Consensus 370 ~~~~~~~vkLvIVG-G~~~e~Y~~~Le~la~~lgL~~~~V~flG~v~dV~~~L~~ADVfVlPS~~E~qGFplvLLEAMA~ 448 (911)
..++++|+++| |+.. +.+++.++++++++ ++.|+|..+|+.++|++||++|+||..| |||++++|||+|
T Consensus 226 ---~~~~~~l~i~G~g~~~----~~~~~~~~~~~~~~-~v~~~g~~~~~~~~~~~adi~v~pS~~E--g~~~~~lEAma~ 295 (374)
T TIGR03088 226 ---GAERLRLVIVGDGPAR----GACEQMVRAAGLAH-LVWLPGERDDVPALMQALDLFVLPSLAE--GISNTILEAMAS 295 (374)
T ss_pred ---cccceEEEEecCCchH----HHHHHHHHHcCCcc-eEEEcCCcCCHHHHHHhcCEEEeccccc--cCchHHHHHHHc
Confidence 12349999999 7765 77889999999988 8999999999999999999999999988 799999999999
Q ss_pred CCCEEecCCCccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHH
Q 002535 449 RKPIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSV-KNLMALETIEGYAMLLEN 527 (911)
Q Consensus 449 G~PVIaTd~gGi~EiV~dg~nGlLv~~~D~eaLAeaI~~LLsd~~~p~~~~~mg~~ar~~a-e~Fs~e~ia~~y~~Lye~ 527 (911)
|+|||+|+.||.+|++.++.+|++++++|+++++++|.+++++ ++.+.+|+++|++.+ ++|+|+.++++|.++|++
T Consensus 296 G~Pvv~s~~~g~~e~i~~~~~g~~~~~~d~~~la~~i~~l~~~---~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~y~~ 372 (374)
T TIGR03088 296 GLPVIATAVGGNPELVQHGVTGALVPPGDAVALARALQPYVSD---PAARRAHGAAGRARAEQQFSINAMVAAYAGLYDQ 372 (374)
T ss_pred CCCEEEcCCCCcHHHhcCCCceEEeCCCCHHHHHHHHHHHHhC---HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999 899999999999998 679999999999999988
Q ss_pred Hh
Q 002535 528 VL 529 (911)
Q Consensus 528 vL 529 (911)
++
T Consensus 373 ~~ 374 (374)
T TIGR03088 373 LL 374 (374)
T ss_pred hC
Confidence 63
No 2
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=100.00 E-value=6.1e-34 Score=342.06 Aligned_cols=424 Identities=12% Similarity=0.098 Sum_probs=295.4
Q ss_pred HHHHHHHHHHhhhcCCceeeeccCCcccccccccCcccccccccCc--cccCCeeEeeccchhhhhhccccccccccccc
Q 002535 57 AVFLFFVVIFQLFLPGSVTVMDESQGSLRDFDKVPADLMFLKEMGL--LDFGEEVTFLPLKLMEKFQSEDKDVNLTSVFH 134 (911)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~g~~~~~~p~~~~~~f~~~~~~~~~~~~~~ 134 (911)
.+.-.|-=.+..+-||+-..-+. .-....|+-+++.+|+ ...|..+.++..|-.--+++++. +
T Consensus 206 ~A~~~~~~a~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~ 270 (694)
T PRK15179 206 RARDVLQAGLDAIGDGARKLTRR-------LVDLNADLAALRRLGVEGDGRDVPVSILVLEKMLQEIGRRR--------N 270 (694)
T ss_pred HHHHHHHHHHHhhCcchHHHHHH-------HHHHHHHHHHHHHcCcccccCCCceeeeeHHHHHHHHhhcC--------c
Confidence 34445555667778887310111 1224566777777776 56678888877664444444443 1
Q ss_pred ccccCCCCCCC-EEEEEeCCCCCChHHHHHHHHHHHHHHCCC------------eEEEEEe----CCC--cchhhhhhcC
Q 002535 135 RKLHRFGYRKP-QLALVFPDLLIDPQQLQMVTIAIALREIGY------------AIQVYSL----EDG--RAHEVWRNIG 195 (911)
Q Consensus 135 ~~~~r~~~rkp-rIalI~~~L~~GGae~~v~~LAk~L~~~Gy------------eV~V~t~----~~g--~~~~~~~~~g 195 (911)
.....-+.++. ||++|++++..||+|+++.+++.+|...++ ++.|++. .++ .........|
T Consensus 271 ~~~~~~~~~~~~rIl~vi~sl~~GGAEr~~~~La~~l~~~~~~~~~~~g~g~~~~~~V~~~~~~~~~g~~~~~~~L~~~G 350 (694)
T PRK15179 271 AEYDAGPESFVGPVLMINGSLGAGGAERQFVNTAVALQSAIQQGQSIAGYGVLGPVQVVCRSLRSREGADFFAATLADAG 350 (694)
T ss_pred ccccCCCCCCcceEEEEeCCCCCCcHHHHHHHHHHHHHhcccCcccccCccCCCCcEEEEEecccccCcchHHHHHHhCC
Confidence 22334477887 999999999999999999999999999965 3444443 222 2344455677
Q ss_pred ceEEEeccc------------------------------hhHHHhhhhcCccEEEEcCcchhHHHHHHhhCCCCCCCEEE
Q 002535 196 VPVAILQTG------------------------------REKASFVNWLNYDGILVNSLEAKVVISNIMQEPFKSLPLVW 245 (911)
Q Consensus 196 i~v~~l~~~------------------------------~~l~~lI~~~kpDIIhvhs~~~~~~ia~L~~~~~~giPvV~ 245 (911)
+++..+... ..+..+++..+|||||+|..... .+..++.+ ..++|+|+
T Consensus 351 v~v~~l~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~L~~~lk~~kpDIVH~h~~~a~-~lg~lAa~-~~gvPvIv 428 (694)
T PRK15179 351 IPVSVYSDMQAWGGCEFSSLLAPYREYLRFLPKQIIEGTTKLTDVMRSSVPSVVHIWQDGSI-FACALAAL-LAGVPRIV 428 (694)
T ss_pred CeEEEeccCCccCcccccccchhhHHHhhhcchhHHHHHHHHHHHHHHcCCcEEEEeCCcHH-HHHHHHHH-HcCCCEEE
Confidence 776655332 22344577789999999988773 55555543 55789876
Q ss_pred -EEcCchhhHHHHHHHhhcchhhHhhHHHHHhhcc-eEEecCCc-c---ccccccCCCCCEEEeCCCCCCcccccccCch
Q 002535 246 -TIHEGTLATRARNYASSGQLELLNDWKKVFNRAT-VVVFPDYV-L---PMMYSAFDAGNYYVIPGSPAKAWEADTNMDL 319 (911)
Q Consensus 246 -tiH~~~L~~~l~k~~~~~~d~lIs~~~~~~~~a~-~vvfpn~~-l---~ii~~~id~~ki~VIpg~gVD~~~f~~~~~~ 319 (911)
+.|+.+.......+... ... .+.. +..++ .+++.++. . .....+++.+++.+||| |+|...|.+.+..
T Consensus 429 ~t~h~~~~~~~~~~~~~~--~~~--l~~~-l~~~~~~i~Vs~S~~~~~~l~~~~g~~~~kI~VI~N-GVd~~~f~~~~~~ 502 (694)
T PRK15179 429 LSVRTMPPVDRPDRYRVE--YDI--IYSE-LLKMRGVALSSNSQFAAHRYADWLGVDERRIPVVYN-GLAPLKSVQDDAC 502 (694)
T ss_pred EEeCCCccccchhHHHHH--HHH--HHHH-HHhcCCeEEEeCcHHHHHHHHHHcCCChhHEEEECC-CcCHHhcCCCchh
Confidence 55653211111111000 000 0111 11112 12222222 1 11123456678999995 8987554321111
Q ss_pred hhHHHHHh--hCCCCCCeEEEEEEeccccccccccHHHHHHHHHHhhhhcccCCCCCCCEEEEEEe-CCCCCchHHHHHH
Q 002535 320 YNDTVRVK--MGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILS-GDSTSNYSVVIEA 396 (911)
Q Consensus 320 ~k~~lR~~--lgi~~d~~vIL~VGsrl~~~KGiKg~dlLLeAl~~L~~~~p~~~~~~~~vkLvIVG-G~~~e~Y~~~Le~ 396 (911)
...+.. ...+.+.++|+++| ++.+. ||++.+++|+..+.++.|+ ++|+|+| |+.. +.+++
T Consensus 503 --~~~~~~~~~~~~~~~~vIg~VG-RL~~~---KG~~~LI~A~a~l~~~~p~-------~~LvIvG~G~~~----~~L~~ 565 (694)
T PRK15179 503 --TAMMAQFDARTSDARFTVGTVM-RVDDN---KRPFLWVEAAQRFAASHPK-------VRFIMVGGGPLL----ESVRE 565 (694)
T ss_pred --hHHHHhhccccCCCCeEEEEEE-eCCcc---CCHHHHHHHHHHHHHHCcC-------eEEEEEccCcch----HHHHH
Confidence 111111 22345567899999 55555 9999999999999888887 9999999 7765 78999
Q ss_pred HHHHcCCCCccEEEccccccHHHHHHHcCeeEEcccCCcCCccHHHHHHHHcCCCEEecCCCccccccccCccEEEEcCC
Q 002535 397 IAHNLHYPLGVVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSNIRKYVDDRVNGYLFPKE 476 (911)
Q Consensus 397 la~~lgL~~~~V~flG~v~dV~~~L~~ADVfVlPS~~E~qGFplvLLEAMA~G~PVIaTd~gGi~EiV~dg~nGlLv~~~ 476 (911)
+++++++.+ +|+|+|+.+++..+|+.+|++|+||.+| |||++++|||+||+|||+|+.||++|+|.++.+|++++++
T Consensus 566 l~~~lgL~~-~V~flG~~~dv~~ll~aaDv~VlpS~~E--gfp~vlLEAMA~G~PVVat~~gG~~EiV~dg~~GlLv~~~ 642 (694)
T PRK15179 566 FAQRLGMGE-RILFTGLSRRVGYWLTQFNAFLLLSRFE--GLPNVLIEAQFSGVPVVTTLAGGAGEAVQEGVTGLTLPAD 642 (694)
T ss_pred HHHHcCCCC-cEEEcCCcchHHHHHHhcCEEEeccccc--cchHHHHHHHHcCCeEEEECCCChHHHccCCCCEEEeCCC
Confidence 999999998 9999999999999999999999999998 7999999999999999999999999999999999999987
Q ss_pred C--HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHH
Q 002535 477 N--IKALTHIILQVITNGKISPFARNIASIGRRSV-KNLMALETIEGYAMLLE 526 (911)
Q Consensus 477 D--~eaLAeaI~~LLsd~~~p~~~~~mg~~ar~~a-e~Fs~e~ia~~y~~Lye 526 (911)
| +++++++|.+++.+ ......+++++++.+ ++|+|+.++++|.++|+
T Consensus 643 d~~~~~La~aL~~ll~~---l~~~~~l~~~ar~~a~~~FS~~~~~~~~~~lY~ 692 (694)
T PRK15179 643 TVTAPDVAEALARIHDM---CAADPGIARKAADWASARFSLNQMIASTVRCYQ 692 (694)
T ss_pred CCChHHHHHHHHHHHhC---hhccHHHHHHHHHHHHHhCCHHHHHHHHHHHhC
Confidence 7 46899999999887 655667889999999 67999999999999985
No 3
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=100.00 E-value=1.4e-33 Score=320.77 Aligned_cols=352 Identities=16% Similarity=0.172 Sum_probs=261.0
Q ss_pred CChHHHHHHHHHHHHHHCCCeEEEEEeCCCcch--hhhhhcCceEEEeccc-------h------------hHHHhhhh-
Q 002535 156 IDPQQLQMVTIAIALREIGYAIQVYSLEDGRAH--EVWRNIGVPVAILQTG-------R------------EKASFVNW- 213 (911)
Q Consensus 156 ~GGae~~v~~LAk~L~~~GyeV~V~t~~~g~~~--~~~~~~gi~v~~l~~~-------~------------~l~~lI~~- 213 (911)
.||.+.++.+++++|.++||+|+|++...+... ......++.+..++.. . .+...++.
T Consensus 19 ~GG~e~~v~~la~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (405)
T TIGR03449 19 AGGMNVYILETATELARRGIEVDIFTRATRPSQPPVVEVAPGVRVRNVVAGPYEGLDKEDLPTQLCAFTGGVLRAEARHE 98 (405)
T ss_pred CCCceehHHHHHHHHhhCCCEEEEEecccCCCCCCccccCCCcEEEEecCCCcccCCHHHHHHHHHHHHHHHHHHHhhcc
Confidence 699999999999999999999999997543211 1111234455443210 0 01112222
Q ss_pred -cCccEEEEcCcchhHHHHHHhhCCCCCCCEEEEEcCchhhHHHHHHHhhc--ch-hhH-hhHHHHHhhcceEEecCCcc
Q 002535 214 -LNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYASSG--QL-ELL-NDWKKVFNRATVVVFPDYVL 288 (911)
Q Consensus 214 -~kpDIIhvhs~~~~~~ia~L~~~~~~giPvV~tiH~~~L~~~l~k~~~~~--~d-~lI-s~~~~~~~~a~~vvfpn~~l 288 (911)
.+||+||+|.... +.++.++.+ ..++|+|+|.|+...... .+.... .. ... ......+..++.+++.+...
T Consensus 99 ~~~~Diih~h~~~~-~~~~~~~~~-~~~~p~v~t~h~~~~~~~--~~~~~~~~~~~~~~~~~e~~~~~~~d~vi~~s~~~ 174 (405)
T TIGR03449 99 PGYYDLIHSHYWLS-GQVGWLLRD-RWGVPLVHTAHTLAAVKN--AALADGDTPEPEARRIGEQQLVDNADRLIANTDEE 174 (405)
T ss_pred CCCCCeEEechHHH-HHHHHHHHH-hcCCCEEEeccchHHHHH--HhccCCCCCchHHHHHHHHHHHHhcCeEEECCHHH
Confidence 3799999998655 344444433 567899999996321111 010000 00 000 11234556777777765541
Q ss_pred -c--cccccCCCCCEEEeCCCCCCcccccccCchhhHHHHHhhCCCCCCeEEEEEEeccccccccccHHHHHHHHHHhhh
Q 002535 289 -P--MMYSAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFS 365 (911)
Q Consensus 289 -~--ii~~~id~~ki~VIpg~gVD~~~f~~~~~~~k~~lR~~lgi~~d~~vIL~VGsrl~~~KGiKg~dlLLeAl~~L~~ 365 (911)
. ....+.+.+++.+||+ |+|...+.+ ..+...+.++++++++++++++| ++.+. ||++.+++|+..+.+
T Consensus 175 ~~~~~~~~~~~~~ki~vi~n-gvd~~~~~~---~~~~~~~~~~~~~~~~~~i~~~G-~l~~~---K~~~~li~a~~~l~~ 246 (405)
T TIGR03449 175 ARDLVRHYDADPDRIDVVAP-GADLERFRP---GDRATERARLGLPLDTKVVAFVG-RIQPL---KAPDVLLRAVAELLD 246 (405)
T ss_pred HHHHHHHcCCChhhEEEECC-CcCHHHcCC---CcHHHHHHhcCCCCCCcEEEEec-CCCcc---cCHHHHHHHHHHHHh
Confidence 1 1122455678999994 898854432 23445677888888888999999 55555 999999999999987
Q ss_pred hcccCCCCCCCEEEEEEeCCCC-C-chHHHHHHHHHHcCCCCccEEEcccc--ccHHHHHHHcCeeEEcccCCcCCccHH
Q 002535 366 EVSVENESNSPIKVMILSGDST-S-NYSVVIEAIAHNLHYPLGVVKHMAAE--GDVDSVLNTADVVIYGSFLEEQTFPEI 441 (911)
Q Consensus 366 ~~p~~~~~~~~vkLvIVGG~~~-e-~Y~~~Le~la~~lgL~~~~V~flG~v--~dV~~~L~~ADVfVlPS~~E~qGFplv 441 (911)
+.|+ .+++|+|+||... . .+.+.++++++++++.+ +|+|+|++ +++.++|+.||++++||..| |||++
T Consensus 247 ~~~~-----~~~~l~ivG~~~~~g~~~~~~l~~~~~~~~l~~-~v~~~g~~~~~~~~~~l~~ad~~v~ps~~E--~~g~~ 318 (405)
T TIGR03449 247 RDPD-----RNLRVIVVGGPSGSGLATPDALIELAAELGIAD-RVRFLPPRPPEELVHVYRAADVVAVPSYNE--SFGLV 318 (405)
T ss_pred hCCC-----cceEEEEEeCCCCCcchHHHHHHHHHHHcCCCc-eEEECCCCCHHHHHHHHHhCCEEEECCCCC--CcChH
Confidence 6653 2389999995332 2 45578899999999987 89999986 78999999999999999988 79999
Q ss_pred HHHHHHcCCCEEecCCCccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhcCHHHHHHHH
Q 002535 442 LVKALCFRKPIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSVKNLMALETIEGY 521 (911)
Q Consensus 442 LLEAMA~G~PVIaTd~gGi~EiV~dg~nGlLv~~~D~eaLAeaI~~LLsd~~~p~~~~~mg~~ar~~ae~Fs~e~ia~~y 521 (911)
++|||++|+|||+++.||.+|++.++.+|++++++|+++++++|.+++++ ++.+.+|++++++.+++|+|+.++++|
T Consensus 319 ~lEAma~G~Pvi~~~~~~~~e~i~~~~~g~~~~~~d~~~la~~i~~~l~~---~~~~~~~~~~~~~~~~~fsw~~~~~~~ 395 (405)
T TIGR03449 319 AMEAQACGTPVVAARVGGLPVAVADGETGLLVDGHDPADWADALARLLDD---PRTRIRMGAAAVEHAAGFSWAATADGL 395 (405)
T ss_pred HHHHHHcCCCEEEecCCCcHhhhccCCceEECCCCCHHHHHHHHHHHHhC---HHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999 888999999999999889999999999
Q ss_pred HHHHHHHhc
Q 002535 522 AMLLENVLK 530 (911)
Q Consensus 522 ~~Lye~vL~ 530 (911)
.++|++++.
T Consensus 396 ~~~y~~~~~ 404 (405)
T TIGR03449 396 LSSYRDALA 404 (405)
T ss_pred HHHHHHHhh
Confidence 999998763
No 4
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=100.00 E-value=1.4e-33 Score=314.61 Aligned_cols=350 Identities=14% Similarity=0.145 Sum_probs=256.2
Q ss_pred CEEEEEeCCCCCChHHHHHHHHHHHHHHCCCeEEEEEeCCCcchhhhhhcCceEEEe---------------ccchhHHH
Q 002535 145 PQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAIL---------------QTGREKAS 209 (911)
Q Consensus 145 prIalI~~~L~~GGae~~v~~LAk~L~~~GyeV~V~t~~~g~~~~~~~~~gi~v~~l---------------~~~~~l~~ 209 (911)
+||+++.. ...||.+.++.++++.|.++||+|+|++....... .....++.+..+ .....+.+
T Consensus 1 mki~~~~~-p~~gG~~~~~~~la~~L~~~G~~v~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 78 (371)
T cd04962 1 MKIGIVCY-PTYGGSGVVATELGKALARRGHEVHFITSSRPFRL-DEYSPNIFFHEVEVPQYPLFQYPPYDLALASKIAE 78 (371)
T ss_pred CceeEEEE-eCCCCccchHHHHHHHHHhcCCceEEEecCCCcch-hhhccCeEEEEecccccchhhcchhHHHHHHHHHH
Confidence 36777764 35799999999999999999999999987542111 111111111111 01123445
Q ss_pred hhhhcCccEEEEcCcchhHHHHHHhh--CCCCCCCEEEEEcCchhhHHHHHHHhhcchhhHhhHHHHHhhcceEEecCCc
Q 002535 210 FVNWLNYDGILVNSLEAKVVISNIMQ--EPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRATVVVFPDYV 287 (911)
Q Consensus 210 lI~~~kpDIIhvhs~~~~~~ia~L~~--~~~~giPvV~tiH~~~L~~~l~k~~~~~~d~lIs~~~~~~~~a~~vvfpn~~ 287 (911)
.++..+||+||+|..........+.. .+..++|+|+++|+....... ...... ...+..++.++.++..+..
T Consensus 79 ~i~~~~~divh~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~---~~~~~~---~~~~~~~~~~d~ii~~s~~ 152 (371)
T cd04962 79 VAKRYKLDLLHVHYAVPHAVAAYLAREILGKKDLPVVTTLHGTDITLVG---QDPSFQ---PATRFSIEKSDGVTAVSES 152 (371)
T ss_pred HHhcCCccEEeecccCCccHHHHHHHHhcCcCCCcEEEEEcCCcccccc---ccccch---HHHHHHHhhCCEEEEcCHH
Confidence 56778999999997654212222221 112479999999974322100 000000 1123344556666665544
Q ss_pred ccc--ccccCCCCCEEEeCCCCCCcccccccCchhhHHHHHhhCCCCCCeEEEEEEeccccccccccHHHHHHHHHHhhh
Q 002535 288 LPM--MYSAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFS 365 (911)
Q Consensus 288 l~i--i~~~id~~ki~VIpg~gVD~~~f~~~~~~~k~~lR~~lgi~~d~~vIL~VGsrl~~~KGiKg~dlLLeAl~~L~~ 365 (911)
... ........++.+||+ ++|...+. +......+++++..++.++++++|+ +.+. ||++.+++|+..+.+
T Consensus 153 ~~~~~~~~~~~~~~i~vi~n-~~~~~~~~---~~~~~~~~~~~~~~~~~~~il~~g~-l~~~---K~~~~li~a~~~l~~ 224 (371)
T cd04962 153 LRQETYELFDITKEIEVIPN-FVDEDRFR---PKPDEALKRRLGAPEGEKVLIHISN-FRPV---KRIDDVIRIFAKVRK 224 (371)
T ss_pred HHHHHHHhcCCcCCEEEecC-CcCHhhcC---CCchHHHHHhcCCCCCCeEEEEecc-cccc---cCHHHHHHHHHHHHh
Confidence 211 111123467889994 78774332 2223445677888888899999994 4444 999999999999876
Q ss_pred hcccCCCCCCCEEEEEEe-CCCCCchHHHHHHHHHHcCCCCccEEEccccccHHHHHHHcCeeEEcccCCcCCccHHHHH
Q 002535 366 EVSVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVK 444 (911)
Q Consensus 366 ~~p~~~~~~~~vkLvIVG-G~~~e~Y~~~Le~la~~lgL~~~~V~flG~v~dV~~~L~~ADVfVlPS~~E~qGFplvLLE 444 (911)
+ ++ ++++++| |+.. +.+++.++++++.+ +|.|+|+.+++.++|+.||++|+||..| |||++++|
T Consensus 225 ~-~~-------~~l~i~G~g~~~----~~~~~~~~~~~~~~-~v~~~g~~~~~~~~~~~~d~~v~ps~~E--~~~~~~~E 289 (371)
T cd04962 225 E-VP-------ARLLLVGDGPER----SPAERLARELGLQD-DVLFLGKQDHVEELLSIADLFLLPSEKE--SFGLAALE 289 (371)
T ss_pred c-CC-------ceEEEEcCCcCH----HHHHHHHHHcCCCc-eEEEecCcccHHHHHHhcCEEEeCCCcC--CCccHHHH
Confidence 5 33 7999999 7654 77888999999987 8999999999999999999999999988 79999999
Q ss_pred HHHcCCCEEecCCCccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH-HhcCHHHHHHHHHH
Q 002535 445 ALCFRKPIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSV-KNLMALETIEGYAM 523 (911)
Q Consensus 445 AMA~G~PVIaTd~gGi~EiV~dg~nGlLv~~~D~eaLAeaI~~LLsd~~~p~~~~~mg~~ar~~a-e~Fs~e~ia~~y~~ 523 (911)
||++|+|||+|+.|+.+|++.++.+|++++++|+++++++|..++++ ++.+.+|++++++.+ ++|+++.++++|.+
T Consensus 290 Ama~g~PvI~s~~~~~~e~i~~~~~G~~~~~~~~~~l~~~i~~l~~~---~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~ 366 (371)
T cd04962 290 AMACGVPVVASNAGGIPEVVKHGETGFLVDVGDVEAMAEYALSLLED---DELWQEFSRAARNRAAERFDSERIVPQYEA 366 (371)
T ss_pred HHHcCCCEEEeCCCCchhhhcCCCceEEcCCCCHHHHHHHHHHHHhC---HHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999 999999999999996 77999999999999
Q ss_pred HHHHH
Q 002535 524 LLENV 528 (911)
Q Consensus 524 Lye~v 528 (911)
+|+++
T Consensus 367 ~y~~~ 371 (371)
T cd04962 367 LYRRL 371 (371)
T ss_pred HHHhC
Confidence 99863
No 5
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=100.00 E-value=5.4e-33 Score=323.60 Aligned_cols=353 Identities=14% Similarity=0.161 Sum_probs=256.7
Q ss_pred CCCCEEEEEeC---CCCCChHHHHHHHHHHHHHHCCCeEEEEEeCCCcchhhhhhcCceEE---------------Eecc
Q 002535 142 YRKPQLALVFP---DLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVA---------------ILQT 203 (911)
Q Consensus 142 ~rkprIalI~~---~L~~GGae~~v~~LAk~L~~~GyeV~V~t~~~g~~~~~~~~~gi~v~---------------~l~~ 203 (911)
.+|+||+++.. ....||.+..+.++++.|.++||+|.+++...+... .. .++.+. .+..
T Consensus 56 ~~~mrI~~~~~~~~~~~~gG~~~~~~~l~~~L~~~G~eV~vlt~~~~~~~-~~--~g~~v~~~~~~~~~~~~~~~~~~~~ 132 (465)
T PLN02871 56 SRPRRIALFVEPSPFSYVSGYKNRFQNFIRYLREMGDEVLVVTTDEGVPQ-EF--HGAKVIGSWSFPCPFYQKVPLSLAL 132 (465)
T ss_pred CCCceEEEEECCcCCcccccHHHHHHHHHHHHHHCCCeEEEEecCCCCCc-cc--cCceeeccCCcCCccCCCceeeccC
Confidence 78899998864 336799999999999999999999999997653211 11 111110 0111
Q ss_pred chhHHHhhhhcCccEEEEcCcchhHHHHHHhhCCCCCCCEEEEEcCchhhHHHHHHHhhc-chhhHhhHHHHHhhcceEE
Q 002535 204 GREKASFVNWLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYASSG-QLELLNDWKKVFNRATVVV 282 (911)
Q Consensus 204 ~~~l~~lI~~~kpDIIhvhs~~~~~~ia~L~~~~~~giPvV~tiH~~~L~~~l~k~~~~~-~d~lIs~~~~~~~~a~~vv 282 (911)
...+...++..+||+||+|++........++. +..++|+|++.|+..... ...+.... ...+....+..++.++.++
T Consensus 133 ~~~l~~~i~~~kpDiIh~~~~~~~~~~~~~~a-k~~~ip~V~~~h~~~~~~-~~~~~~~~~~~~~~~~~r~~~~~ad~ii 210 (465)
T PLN02871 133 SPRIISEVARFKPDLIHASSPGIMVFGALFYA-KLLCVPLVMSYHTHVPVY-IPRYTFSWLVKPMWDIIRFLHRAADLTL 210 (465)
T ss_pred CHHHHHHHHhCCCCEEEECCCchhHHHHHHHH-HHhCCCEEEEEecCchhh-hhcccchhhHHHHHHHHHHHHhhCCEEE
Confidence 12455667788999999998755322333332 256899999999732111 01110000 0011112234456677777
Q ss_pred ecCCccc--ccccc-CCCCCEEEeCCCCCCcccccccCchhhHHHHHhhC-CCCCCeEEEEEEeccccccccccHHHHHH
Q 002535 283 FPDYVLP--MMYSA-FDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMG-FKPDDLVIAIVGTQFMYRGLWLEHALILR 358 (911)
Q Consensus 283 fpn~~l~--ii~~~-id~~ki~VIpg~gVD~~~f~~~~~~~k~~lR~~lg-i~~d~~vIL~VGsrl~~~KGiKg~dlLLe 358 (911)
..+.... +...+ .+..++.+||+ |+|...|.+... ....+.++. ..+++++|+++| ++.+. ||++.+++
T Consensus 211 ~~S~~~~~~l~~~~~~~~~kv~vi~n-Gvd~~~f~p~~~--~~~~~~~~~~~~~~~~~i~~vG-rl~~~---K~~~~li~ 283 (465)
T PLN02871 211 VTSPALGKELEAAGVTAANRIRVWNK-GVDSESFHPRFR--SEEMRARLSGGEPEKPLIVYVG-RLGAE---KNLDFLKR 283 (465)
T ss_pred ECCHHHHHHHHHcCCCCcCeEEEeCC-ccCccccCCccc--cHHHHHHhcCCCCCCeEEEEeC-CCchh---hhHHHHHH
Confidence 7665421 11122 33568889984 999865543222 233444443 345678999999 55555 99999999
Q ss_pred HHHHhhhhcccCCCCCCCEEEEEEe-CCCCCchHHHHHHHHHHcCCCCccEEEcccc--ccHHHHHHHcCeeEEcccCCc
Q 002535 359 ALLPLFSEVSVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAAE--GDVDSVLNTADVVIYGSFLEE 435 (911)
Q Consensus 359 Al~~L~~~~p~~~~~~~~vkLvIVG-G~~~e~Y~~~Le~la~~lgL~~~~V~flG~v--~dV~~~L~~ADVfVlPS~~E~ 435 (911)
+++.+ |+ ++|+|+| |+.. +.++++++. . +|+|+|++ +++..+|+.||++|+||..|
T Consensus 284 a~~~~----~~-------~~l~ivG~G~~~----~~l~~~~~~----~-~V~f~G~v~~~ev~~~~~~aDv~V~pS~~E- 342 (465)
T PLN02871 284 VMERL----PG-------ARLAFVGDGPYR----EELEKMFAG----T-PTVFTGMLQGDELSQAYASGDVFVMPSESE- 342 (465)
T ss_pred HHHhC----CC-------cEEEEEeCChHH----HHHHHHhcc----C-CeEEeccCCHHHHHHHHHHCCEEEECCccc-
Confidence 88765 34 8999999 7654 677777662 2 59999988 78999999999999999988
Q ss_pred CCccHHHHHHHHcCCCEEecCCCcccccccc---CccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhc
Q 002535 436 QTFPEILVKALCFRKPIIAPDLSNIRKYVDD---RVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSVKNL 512 (911)
Q Consensus 436 qGFplvLLEAMA~G~PVIaTd~gGi~EiV~d---g~nGlLv~~~D~eaLAeaI~~LLsd~~~p~~~~~mg~~ar~~ae~F 512 (911)
|||++++||||||+|||+++.+|+.|++.+ +.+|++++++|+++++++|.++++| ++.+++|++++++.+++|
T Consensus 343 -~~g~~vlEAmA~G~PVI~s~~gg~~eiv~~~~~~~~G~lv~~~d~~~la~~i~~ll~~---~~~~~~~~~~a~~~~~~f 418 (465)
T PLN02871 343 -TLGFVVLEAMASGVPVVAARAGGIPDIIPPDQEGKTGFLYTPGDVDDCVEKLETLLAD---PELRERMGAAAREEVEKW 418 (465)
T ss_pred -ccCcHHHHHHHcCCCEEEcCCCCcHhhhhcCCCCCceEEeCCCCHHHHHHHHHHHHhC---HHHHHHHHHHHHHHHHhC
Confidence 799999999999999999999999999998 9999999999999999999999999 999999999999999999
Q ss_pred CHHHHHHHHHH-HHHHHhcC
Q 002535 513 MALETIEGYAM-LLENVLKL 531 (911)
Q Consensus 513 s~e~ia~~y~~-Lye~vL~~ 531 (911)
+|+.+++++.+ .|+.++..
T Consensus 419 sw~~~a~~l~~~~Y~~~~~~ 438 (465)
T PLN02871 419 DWRAATRKLRNEQYSAAIWF 438 (465)
T ss_pred CHHHHHHHHHHHHHHHHHHH
Confidence 99999999997 79988754
No 6
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=100.00 E-value=6.6e-33 Score=315.97 Aligned_cols=346 Identities=12% Similarity=0.118 Sum_probs=254.1
Q ss_pred EEEEEeCCC--CCChHHHHHHHHHHHHHHCCCeEEEEEeCCCcc-hhhhhhcCceEEEeccc---------------hhH
Q 002535 146 QLALVFPDL--LIDPQQLQMVTIAIALREIGYAIQVYSLEDGRA-HEVWRNIGVPVAILQTG---------------REK 207 (911)
Q Consensus 146 rIalI~~~L--~~GGae~~v~~LAk~L~~~GyeV~V~t~~~g~~-~~~~~~~gi~v~~l~~~---------------~~l 207 (911)
||++|.+.. ..||+++++..+++.|.++||+|.|++...+.. .......++++..++.. ..+
T Consensus 1 kI~~v~~~~~p~~GG~e~~~~~la~~L~~~G~~V~v~~~~~~~~~~~~~~~~~i~v~~~p~~~~~~~~~~~~~~~~~~~l 80 (398)
T cd03796 1 RICMVSDFFYPNLGGVETHIYQLSQCLIKRGHKVVVITHAYGNRVGIRYLTNGLKVYYLPFVVFYNQSTLPTFFGTFPLL 80 (398)
T ss_pred CeeEEeeccccccccHHHHHHHHHHHHHHcCCeeEEEeccCCcCCCcccccCceeEEEecceeccCCccccchhhhHHHH
Confidence 467776643 479999999999999999999999999754321 11222334444443321 223
Q ss_pred HHhhhhcCccEEEEcCcchhHHHHHHhhCCCCCCCEEEEEcCchhhHHHHHHHhhcchhhHhhHHHHHhhcceEEecCCc
Q 002535 208 ASFVNWLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRATVVVFPDYV 287 (911)
Q Consensus 208 ~~lI~~~kpDIIhvhs~~~~~~ia~L~~~~~~giPvV~tiH~~~L~~~l~k~~~~~~d~lIs~~~~~~~~a~~vvfpn~~ 287 (911)
...+...+||+||+|+.........+...+..++|+|++.|+........... ... ..+..++.++.+++.+..
T Consensus 81 ~~~~~~~~~DiIh~~~~~~~~~~~~~~~~~~~~~~~v~t~h~~~~~~~~~~~~---~~~---~~~~~~~~~d~ii~~s~~ 154 (398)
T cd03796 81 RNILIRERITIVHGHQAFSALAHEALLHARTMGLKTVFTDHSLFGFADASSIH---TNK---LLRFSLADVDHVICVSHT 154 (398)
T ss_pred HHHHHhcCCCEEEECCCCchHHHHHHHHhhhcCCcEEEEecccccccchhhHH---hhH---HHHHhhccCCEEEEecHh
Confidence 44566689999999987653222222223466799999999731110000000 000 122334566766666555
Q ss_pred cc---cccccCCCCCEEEeCCCCCCcccccccCchhhHHHHHhhCCCCCCeEEEEEEeccccccccccHHHHHHHHHHhh
Q 002535 288 LP---MMYSAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLF 364 (911)
Q Consensus 288 l~---ii~~~id~~ki~VIpg~gVD~~~f~~~~~~~k~~lR~~lgi~~d~~vIL~VGsrl~~~KGiKg~dlLLeAl~~L~ 364 (911)
.. .....++.+++.+||+ |+|...|.+... ..+++.++++++| ++.+. ||++.+++|+..+.
T Consensus 155 ~~~~~~~~~~~~~~k~~vi~n-gvd~~~f~~~~~----------~~~~~~~~i~~~g-rl~~~---Kg~~~li~a~~~l~ 219 (398)
T cd03796 155 SKENTVLRASLDPERVSVIPN-AVDSSDFTPDPS----------KRDNDKITIVVIS-RLVYR---KGIDLLVGIIPEIC 219 (398)
T ss_pred HhhHHHHHhCCChhhEEEEcC-ccCHHHcCCCcc----------cCCCCceEEEEEe-ccchh---cCHHHHHHHHHHHH
Confidence 22 2234456678999994 888754433211 0245678999999 55555 99999999999998
Q ss_pred hhcccCCCCCCCEEEEEEe-CCCCCchHHHHHHHHHHcCCCCccEEEcccc--ccHHHHHHHcCeeEEcccCCcCCccHH
Q 002535 365 SEVSVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAAE--GDVDSVLNTADVVIYGSFLEEQTFPEI 441 (911)
Q Consensus 365 ~~~p~~~~~~~~vkLvIVG-G~~~e~Y~~~Le~la~~lgL~~~~V~flG~v--~dV~~~L~~ADVfVlPS~~E~qGFplv 441 (911)
++.|+ ++|+|+| |+.. +.++++++++++.+ +|.|+|++ +++.++|++||++++||..| |||++
T Consensus 220 ~~~~~-------~~l~i~G~g~~~----~~l~~~~~~~~l~~-~v~~~G~~~~~~~~~~l~~ad~~v~pS~~E--~~g~~ 285 (398)
T cd03796 220 KKHPN-------VRFIIGGDGPKR----ILLEEMREKYNLQD-RVELLGAVPHERVRDVLVQGHIFLNTSLTE--AFCIA 285 (398)
T ss_pred hhCCC-------EEEEEEeCCchH----HHHHHHHHHhCCCC-eEEEeCCCCHHHHHHHHHhCCEEEeCChhh--ccCHH
Confidence 87777 9999999 7654 77889999999998 99999986 78999999999999999988 79999
Q ss_pred HHHHHHcCCCEEecCCCccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH-HhcCHHHHHHH
Q 002535 442 LVKALCFRKPIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSV-KNLMALETIEG 520 (911)
Q Consensus 442 LLEAMA~G~PVIaTd~gGi~EiV~dg~nGlLv~~~D~eaLAeaI~~LLsd~~~p~~~~~mg~~ar~~a-e~Fs~e~ia~~ 520 (911)
++||||||+|||+++.||.+|++.++. +++++ .|+++++++|.+++++ +.....++.++++.+ ++|+|+.++++
T Consensus 286 ~~EAma~G~PVI~s~~gg~~e~i~~~~-~~~~~-~~~~~l~~~l~~~l~~---~~~~~~~~~~~~~~~~~~fs~~~~~~~ 360 (398)
T cd03796 286 IVEAASCGLLVVSTRVGGIPEVLPPDM-ILLAE-PDVESIVRKLEEAISI---LRTGKHDPWSFHNRVKKMYSWEDVAKR 360 (398)
T ss_pred HHHHHHcCCCEEECCCCCchhheeCCc-eeecC-CCHHHHHHHHHHHHhC---hhhhhhHHHHHHHHHHhhCCHHHHHHH
Confidence 999999999999999999999998764 55554 4899999999999998 666667788888888 67999999999
Q ss_pred HHHHHHHHhcC
Q 002535 521 YAMLLENVLKL 531 (911)
Q Consensus 521 y~~Lye~vL~~ 531 (911)
|.++|++++..
T Consensus 361 ~~~~y~~l~~~ 371 (398)
T cd03796 361 TEKVYDRILQT 371 (398)
T ss_pred HHHHHHHHhcC
Confidence 99999998863
No 7
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=100.00 E-value=4.7e-33 Score=321.95 Aligned_cols=354 Identities=15% Similarity=0.109 Sum_probs=250.8
Q ss_pred eCCCCCChHHHHHHHHHHHHHHCCC--eEEEEEeCCC------cchhhhh--hcCceEEEeccc----------------
Q 002535 151 FPDLLIDPQQLQMVTIAIALREIGY--AIQVYSLEDG------RAHEVWR--NIGVPVAILQTG---------------- 204 (911)
Q Consensus 151 ~~~L~~GGae~~v~~LAk~L~~~Gy--eV~V~t~~~g------~~~~~~~--~~gi~v~~l~~~---------------- 204 (911)
..+...||++.++.+|++.|.++|| +|+|+|.... .....+. ..|+++..++..
T Consensus 20 ~~~p~~GG~~~~v~~La~~L~~~G~~~~V~v~t~~~~~~~~~~~~~~~~~~~~~gv~v~r~~~~~~~~~~~~~~~~~~~~ 99 (439)
T TIGR02472 20 GRDADTGGQTKYVLELARALARRSEVEQVDLVTRLIKDAKVSPDYAQPIERIAPGARIVRLPFGPRRYLRKELLWPYLDE 99 (439)
T ss_pred CCCCCCCCcchHHHHHHHHHHhCCCCcEEEEEeccccCcCCCCccCCCeeEeCCCcEEEEecCCCCCCcChhhhhhhHHH
Confidence 3345679999999999999999997 9999996321 1111111 346666655431
Q ss_pred --hhHHHhhhh--cCccEEEEcCcchhHHHHHHhhCCCCCCCEEEEEcCchhhHHHHHHH---------hh--cchhhHh
Q 002535 205 --REKASFVNW--LNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYA---------SS--GQLELLN 269 (911)
Q Consensus 205 --~~l~~lI~~--~kpDIIhvhs~~~~~~ia~L~~~~~~giPvV~tiH~~~L~~~l~k~~---------~~--~~d~lIs 269 (911)
..+...++. .+|||||+|.... +.++.++.+ ..++|+|+|.|+...... ..+. .. .....+.
T Consensus 100 ~~~~l~~~~~~~~~~~DvIH~h~~~~-~~~~~~~~~-~~~~p~V~t~H~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 176 (439)
T TIGR02472 100 LADNLLQHLRQQGHLPDLIHAHYADA-GYVGARLSR-LLGVPLIFTGHSLGREKR-RRLLAAGLKPQQIEKQYNISRRIE 176 (439)
T ss_pred HHHHHHHHHHHcCCCCCEEEEcchhH-HHHHHHHHH-HhCCCEEEecccccchhh-hhcccCCCChhhhhhhcchHHHHH
Confidence 122333443 2699999998765 355555543 567899999996321100 0000 00 0011122
Q ss_pred hHHHHHhhcceEEecCCcc-cc---ccccCCCCCEEEeCCCCCCcccccccCchh-hHH---HHHhhCCCCCCeEEEEEE
Q 002535 270 DWKKVFNRATVVVFPDYVL-PM---MYSAFDAGNYYVIPGSPAKAWEADTNMDLY-NDT---VRVKMGFKPDDLVIAIVG 341 (911)
Q Consensus 270 ~~~~~~~~a~~vvfpn~~l-~i---i~~~id~~ki~VIpg~gVD~~~f~~~~~~~-k~~---lR~~lgi~~d~~vIL~VG 341 (911)
..+..++.++.++..+... .. .+..++.+++.+||| |+|...|.+..... ... .+..++..++.++++++|
T Consensus 177 ~~~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~ki~vIpn-Gvd~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vG 255 (439)
T TIGR02472 177 AEEETLAHASLVITSTHQEIEEQYALYDSYQPERMQVIPP-GVDLSRFYPPQSSEETSEIDNLLAPFLKDPEKPPILAIS 255 (439)
T ss_pred HHHHHHHhCCEEEECCHHHHHHHHHhccCCCccceEEECC-CcChhhcCCCCccccchhHHHHHHhhccccCCcEEEEEc
Confidence 3445667788777664331 11 123566789999994 99987665543221 111 223455566778999999
Q ss_pred eccccccccccHHHHHHHHHHhhhhcccCCCCCCCEEEE-EEe-CCCCCc-------hHHHHHHHHHHcCCCCccEEEcc
Q 002535 342 TQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVM-ILS-GDSTSN-------YSVVIEAIAHNLHYPLGVVKHMA 412 (911)
Q Consensus 342 srl~~~KGiKg~dlLLeAl~~L~~~~p~~~~~~~~vkLv-IVG-G~~~e~-------Y~~~Le~la~~lgL~~~~V~flG 412 (911)
++.+. ||++.+++|++.+...... .+++ |+| |+..+. +.+.++++++++++.+ +|+|+|
T Consensus 256 -rl~~~---Kg~~~li~A~~~l~~~~~~-------~~l~li~G~g~~~~~l~~~~~~~~~~~~~~~~~~~l~~-~V~f~g 323 (439)
T TIGR02472 256 -RPDRR---KNIPSLVEAYGRSPKLQEM-------ANLVLVLGCRDDIRKMESQQREVLQKVLLLIDRYDLYG-KVAYPK 323 (439)
T ss_pred -CCccc---CCHHHHHHHHHhChhhhhh-------ccEEEEeCCccccccccHHHHHHHHHHHHHHHHcCCCc-eEEecC
Confidence 55555 9999999999875321111 2333 557 554322 2334566788899998 999999
Q ss_pred cc--ccHHHHHHHc----CeeEEcccCCcCCccHHHHHHHHcCCCEEecCCCccccccccCccEEEEcCCCHHHHHHHHH
Q 002535 413 AE--GDVDSVLNTA----DVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIIL 486 (911)
Q Consensus 413 ~v--~dV~~~L~~A----DVfVlPS~~E~qGFplvLLEAMA~G~PVIaTd~gGi~EiV~dg~nGlLv~~~D~eaLAeaI~ 486 (911)
+. +++.++|+.| |++|+||..| |||++++||||||+|||+|+.||++|+|.++.+|++++++|+++|+++|.
T Consensus 324 ~~~~~~~~~~~~~a~~~~Dv~v~pS~~E--~fg~~~lEAma~G~PvV~s~~gg~~eiv~~~~~G~lv~~~d~~~la~~i~ 401 (439)
T TIGR02472 324 HHRPDDVPELYRLAARSRGIFVNPALTE--PFGLTLLEAAACGLPIVATDDGGPRDIIANCRNGLLVDVLDLEAIASALE 401 (439)
T ss_pred CCCHHHHHHHHHHHhhcCCEEecccccC--CcccHHHHHHHhCCCEEEeCCCCcHHHhcCCCcEEEeCCCCHHHHHHHHH
Confidence 64 8899999987 9999999998 79999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCcHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHH
Q 002535 487 QVITNGKISPFARNIASIGRRSV-KNLMALETIEGYAMLL 525 (911)
Q Consensus 487 ~LLsd~~~p~~~~~mg~~ar~~a-e~Fs~e~ia~~y~~Ly 525 (911)
++++| ++.+++|+++|++.+ ++|+|+.++++|.+++
T Consensus 402 ~ll~~---~~~~~~~~~~a~~~~~~~fsw~~~~~~~~~l~ 438 (439)
T TIGR02472 402 DALSD---SSQWQLWSRNGIEGVRRHYSWDAHVEKYLRIL 438 (439)
T ss_pred HHHhC---HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 99999 999999999999998 6799999999999876
No 8
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=100.00 E-value=2e-32 Score=302.72 Aligned_cols=333 Identities=18% Similarity=0.135 Sum_probs=252.3
Q ss_pred EEeCCCCCChHHHHHHHHHHHHHHCCCeEEEEEeCCCcchhhhhhcCceEEEeccc-----------hhHHHhhhhcCcc
Q 002535 149 LVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTG-----------REKASFVNWLNYD 217 (911)
Q Consensus 149 lI~~~L~~GGae~~v~~LAk~L~~~GyeV~V~t~~~g~~~~~~~~~gi~v~~l~~~-----------~~l~~lI~~~kpD 217 (911)
.+++++..||+++++.++++.|.++||+|.+++... +........++.+..++.. ..+...+...+||
T Consensus 2 ~~~~~~~~gG~e~~~~~l~~~L~~~g~~v~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d 80 (355)
T cd03819 2 QVLPALESGGVERGTLELARALVERGHRSLVASAGG-RLVAELEAEGSRHIKLPFISKNPLRILLNVARLRRLIREEKVD 80 (355)
T ss_pred ccchhhccCcHHHHHHHHHHHHHHcCCEEEEEcCCC-chHHHHHhcCCeEEEccccccchhhhHHHHHHHHHHHHHcCCC
Confidence 356888899999999999999999999999988643 3333344455554433321 2234456778999
Q ss_pred EEEEcCcchhHHHHHHhhCCCCCCCEEEEEcCchhhHHHHHHHhhcchhhHhhHHHHHhhcceEEecCCccc---ccccc
Q 002535 218 GILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRATVVVFPDYVLP---MMYSA 294 (911)
Q Consensus 218 IIhvhs~~~~~~ia~L~~~~~~giPvV~tiH~~~L~~~l~k~~~~~~d~lIs~~~~~~~~a~~vvfpn~~l~---ii~~~ 294 (911)
+||+|+.... ....++. +..++|+|+++|+...... .+...+..++.+++.+.... ....+
T Consensus 81 ii~~~~~~~~-~~~~~~~-~~~~~~~i~~~h~~~~~~~--------------~~~~~~~~~~~vi~~s~~~~~~~~~~~~ 144 (355)
T cd03819 81 IVHARSRAPA-WSAYLAA-RRTRPPFVTTVHGFYSVNF--------------RYNAIMARGDRVIAVSNFIADHIRENYG 144 (355)
T ss_pred EEEECCCchh-HHHHHHH-HhcCCCEEEEeCCchhhHH--------------HHHHHHHhcCEEEEeCHHHHHHHHHhcC
Confidence 9999987662 4444443 3568999999997432211 11222334555555444311 11234
Q ss_pred CCCCCEEEeCCCCCCcccccccCchh--hHHHHHhhCCCCCCeEEEEEEeccccccccccHHHHHHHHHHhhhhcccCCC
Q 002535 295 FDAGNYYVIPGSPAKAWEADTNMDLY--NDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENE 372 (911)
Q Consensus 295 id~~ki~VIpg~gVD~~~f~~~~~~~--k~~lR~~lgi~~d~~vIL~VGsrl~~~KGiKg~dlLLeAl~~L~~~~p~~~~ 372 (911)
++..++.+||+ |+|...+.+..... ....+++++.+++.++++++| ++... ||++.+++|+..+.++.++
T Consensus 145 ~~~~k~~~i~n-gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G-r~~~~---Kg~~~li~~~~~l~~~~~~--- 216 (355)
T cd03819 145 VDPDRIRVIPR-GVDLDRFDPGAVPPERILALAREWPLPKGKPVILLPG-RLTRW---KGQEVFIEALARLKKDDPD--- 216 (355)
T ss_pred CChhhEEEecC-CccccccCccccchHHHHHHHHHcCCCCCceEEEEee-ccccc---cCHHHHHHHHHHHHhcCCC---
Confidence 55678899995 88875554332221 223677788888889999999 55554 9999999999999887666
Q ss_pred CCCCEEEEEEe-CCCCCchHHHHHHHHHHcCCCCccEEEccccccHHHHHHHcCeeEEcc-cCCcCCccHHHHHHHHcCC
Q 002535 373 SNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNTADVVIYGS-FLEEQTFPEILVKALCFRK 450 (911)
Q Consensus 373 ~~~~vkLvIVG-G~~~e~Y~~~Le~la~~lgL~~~~V~flG~v~dV~~~L~~ADVfVlPS-~~E~qGFplvLLEAMA~G~ 450 (911)
++++|+| |+..+.+...+++.++++++.+ +|.++|+.+++.++|++||++++|| ..| |||++++||||||+
T Consensus 217 ----~~l~ivG~~~~~~~~~~~~~~~~~~~~~~~-~v~~~g~~~~~~~~l~~ad~~i~ps~~~e--~~~~~l~EA~a~G~ 289 (355)
T cd03819 217 ----VHLLIVGDAQGRRFYYAELLELIKRLGLQD-RVTFVGHCSDMPAAYALADIVVSASTEPE--AFGRTAVEAQAMGR 289 (355)
T ss_pred ----eEEEEEECCcccchHHHHHHHHHHHcCCcc-eEEEcCCcccHHHHHHhCCEEEecCCCCC--CCchHHHHHHhcCC
Confidence 9999999 7666566677778888888887 8999999999999999999999999 666 89999999999999
Q ss_pred CEEecCCCccccccccCccEEEEcCCCHHHHHHHHHHHHH-cCCCcHHHHHHHHHHHHHH-HhcCHHH
Q 002535 451 PIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVIT-NGKISPFARNIASIGRRSV-KNLMALE 516 (911)
Q Consensus 451 PVIaTd~gGi~EiV~dg~nGlLv~~~D~eaLAeaI~~LLs-d~~~p~~~~~mg~~ar~~a-e~Fs~e~ 516 (911)
|||+++.++..|++.++.+|++++++|+++++++|..++. + ++.+.+|+++|++.+ ++|++++
T Consensus 290 PvI~~~~~~~~e~i~~~~~g~~~~~~~~~~l~~~i~~~~~~~---~~~~~~~~~~a~~~~~~~f~~~~ 354 (355)
T cd03819 290 PVIASDHGGARETVRPGETGLLVPPGDAEALAQALDQILSLL---PEGRAKMFAKARMCVETLFSYDR 354 (355)
T ss_pred CEEEcCCCCcHHHHhCCCceEEeCCCCHHHHHHHHHHHHhhC---HHHHHHHHHHHHHHHHHhhhhcc
Confidence 9999999999999999999999999999999999975554 7 788889999999999 6698875
No 9
>PRK10307 putative glycosyl transferase; Provisional
Probab=100.00 E-value=2.8e-32 Score=311.85 Aligned_cols=361 Identities=12% Similarity=0.087 Sum_probs=261.0
Q ss_pred CEEEEEeCCC--CCChHHHHHHHHHHHHHHCCCeEEEEEeCCC-cc---h--------hhhhhcCceEEEeccch-----
Q 002535 145 PQLALVFPDL--LIDPQQLQMVTIAIALREIGYAIQVYSLEDG-RA---H--------EVWRNIGVPVAILQTGR----- 205 (911)
Q Consensus 145 prIalI~~~L--~~GGae~~v~~LAk~L~~~GyeV~V~t~~~g-~~---~--------~~~~~~gi~v~~l~~~~----- 205 (911)
+||+++.... ..||++.++..+++.|.++||+|+|+|.... +. . ......++++..++...
T Consensus 1 mkIlii~~~~~P~~~g~~~~~~~l~~~L~~~G~~V~vit~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~r~~~~~~~~~~ 80 (412)
T PRK10307 1 MKILVYGINYAPELTGIGKYTGEMAEWLAARGHEVRVITAPPYYPQWRVGEGYSAWRYRRESEGGVTVWRCPLYVPKQPS 80 (412)
T ss_pred CeEEEEecCCCCCccchhhhHHHHHHHHHHCCCeEEEEecCCCCCCCCCCcccccccceeeecCCeEEEEccccCCCCcc
Confidence 4788887644 4699999999999999999999999997531 10 0 01112355555443210
Q ss_pred ---hHH-----------Hhhh--hcCccEEEEcCcchhHH-HHHHhhCCCCCCCEEEEEcCchhhHHHH-HHH-hhcchh
Q 002535 206 ---EKA-----------SFVN--WLNYDGILVNSLEAKVV-ISNIMQEPFKSLPLVWTIHEGTLATRAR-NYA-SSGQLE 266 (911)
Q Consensus 206 ---~l~-----------~lI~--~~kpDIIhvhs~~~~~~-ia~L~~~~~~giPvV~tiH~~~L~~~l~-k~~-~~~~d~ 266 (911)
.+. .+++ ..+||+||+|++..... .+.++. +..++|+|+++|+........ ... ......
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Div~~~~p~~~~~~~~~~~~-~~~~~~~v~~~~d~~~~~~~~~~~~~~~~~~~ 159 (412)
T PRK10307 81 GLKRLLHLGSFALSSFFPLLAQRRWRPDRVIGVVPTLFCAPGARLLA-RLSGARTWLHIQDYEVDAAFGLGLLKGGKVAR 159 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCCEEEEeCCcHHHHHHHHHHH-HhhCCCEEEEeccCCHHHHHHhCCccCcHHHH
Confidence 010 0111 16899999998765322 223333 356789999999632111000 000 000001
Q ss_pred h-HhhHHHHHhhcceEEecCCccc--cccccCCCCCEEEeCCCCCCcccccccCchhhHHHHHhhCCCCCCeEEEEEEec
Q 002535 267 L-LNDWKKVFNRATVVVFPDYVLP--MMYSAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQ 343 (911)
Q Consensus 267 l-Is~~~~~~~~a~~vvfpn~~l~--ii~~~id~~ki~VIpg~gVD~~~f~~~~~~~k~~lR~~lgi~~d~~vIL~VGsr 343 (911)
+ .......++.++.++..+.... ....+++..++.+||| |+|...+.+.........++++++++++++++|+|+
T Consensus 160 ~~~~~~~~~~~~ad~ii~~S~~~~~~~~~~~~~~~~i~vi~n-gvd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~- 237 (412)
T PRK10307 160 LATAFERSLLRRFDNVSTISRSMMNKAREKGVAAEKVIFFPN-WSEVARFQPVADADVDALRAQLGLPDGKKIVLYSGN- 237 (412)
T ss_pred HHHHHHHHHHhhCCEEEecCHHHHHHHHHcCCCcccEEEECC-CcCHhhcCCCCccchHHHHHHcCCCCCCEEEEEcCc-
Confidence 1 1134455667887777766522 1223456678999995 899865544332224467888999888899999994
Q ss_pred cccccccccHHHHHHHHHHhhhhcccCCCCCCCEEEEEEe-CCCCCchHHHHHHHHHHcCCCCccEEEcccc--ccHHHH
Q 002535 344 FMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAAE--GDVDSV 420 (911)
Q Consensus 344 l~~~KGiKg~dlLLeAl~~L~~~~p~~~~~~~~vkLvIVG-G~~~e~Y~~~Le~la~~lgL~~~~V~flG~v--~dV~~~ 420 (911)
+.+. ||++.+++|++.+. +.|+ ++|+|+| |+.. +.++++++++++++ |.|+|++ +++.++
T Consensus 238 l~~~---kg~~~li~a~~~l~-~~~~-------~~l~ivG~g~~~----~~l~~~~~~~~l~~--v~f~G~~~~~~~~~~ 300 (412)
T PRK10307 238 IGEK---QGLELVIDAARRLR-DRPD-------LIFVICGQGGGK----ARLEKMAQCRGLPN--VHFLPLQPYDRLPAL 300 (412)
T ss_pred cccc---cCHHHHHHHHHHhc-cCCC-------eEEEEECCChhH----HHHHHHHHHcCCCc--eEEeCCCCHHHHHHH
Confidence 4454 99999999999875 3455 9999999 8765 78889999999864 9999986 789999
Q ss_pred HHHcCeeEEcccCCcCC--ccHHHHHHHHcCCCEEecCCCc--cccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcH
Q 002535 421 LNTADVVIYGSFLEEQT--FPEILVKALCFRKPIIAPDLSN--IRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISP 496 (911)
Q Consensus 421 L~~ADVfVlPS~~E~qG--FplvLLEAMA~G~PVIaTd~gG--i~EiV~dg~nGlLv~~~D~eaLAeaI~~LLsd~~~p~ 496 (911)
|++||++++||..|..+ +|.+++||||||+|||+|+.+| +.+++. .+|++++++|+++++++|.++++| ++
T Consensus 301 ~~~aDi~v~ps~~e~~~~~~p~kl~eama~G~PVi~s~~~g~~~~~~i~--~~G~~~~~~d~~~la~~i~~l~~~---~~ 375 (412)
T PRK10307 301 LKMADCHLLPQKAGAADLVLPSKLTNMLASGRNVVATAEPGTELGQLVE--GIGVCVEPESVEALVAAIAALARQ---AL 375 (412)
T ss_pred HHhcCEeEEeeccCcccccCcHHHHHHHHcCCCEEEEeCCCchHHHHHh--CCcEEeCCCCHHHHHHHHHHHHhC---HH
Confidence 99999999999887311 6889999999999999999876 458877 489999999999999999999999 99
Q ss_pred HHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHhc
Q 002535 497 FARNIASIGRRSV-KNLMALETIEGYAMLLENVLK 530 (911)
Q Consensus 497 ~~~~mg~~ar~~a-e~Fs~e~ia~~y~~Lye~vL~ 530 (911)
.+.+|+++|++.+ ++|+|+.++++|.++|++++.
T Consensus 376 ~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~~~ 410 (412)
T PRK10307 376 LRPKLGTVAREYAERTLDKENVLRQFIADIRGLVA 410 (412)
T ss_pred HHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhc
Confidence 9999999999999 569999999999999999875
No 10
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=100.00 E-value=2.6e-32 Score=297.48 Aligned_cols=350 Identities=20% Similarity=0.301 Sum_probs=261.9
Q ss_pred EEEEEeCCCCCChHHHHHHHHHHHHHHCCCeEEEEEeCCCc-chhhhhhcCceEEEeccc---------hhHHHhhhhcC
Q 002535 146 QLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGR-AHEVWRNIGVPVAILQTG---------REKASFVNWLN 215 (911)
Q Consensus 146 rIalI~~~L~~GGae~~v~~LAk~L~~~GyeV~V~t~~~g~-~~~~~~~~gi~v~~l~~~---------~~l~~lI~~~k 215 (911)
||+++++.+..||+++++..+++.|.+.|++|.+++..... ........++++..+... ..+...++..+
T Consensus 1 ~i~~i~~~~~~gG~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (365)
T cd03807 1 KVLHVITGLDVGGAERMLVRLLKGLDRDRFEHVVISLTDRGELGEELEEAGVPVYCLGKRPGRPDPGALLRLYKLIRRLR 80 (365)
T ss_pred CeEEEEeeccCccHHHHHHHHHHHhhhccceEEEEecCcchhhhHHHHhcCCeEEEEecccccccHHHHHHHHHHHHhhC
Confidence 58999999999999999999999999999999999875432 333334456665554322 23455577789
Q ss_pred ccEEEEcCcchhHHHHHHhhCCCCCCCEEEEEcCchhhHHHHHHHhhcchhhHhhHHHHHhhcceEEecCCcc--ccccc
Q 002535 216 YDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRATVVVFPDYVL--PMMYS 293 (911)
Q Consensus 216 pDIIhvhs~~~~~~ia~L~~~~~~giPvV~tiH~~~L~~~l~k~~~~~~d~lIs~~~~~~~~a~~vvfpn~~l--~ii~~ 293 (911)
||+||++..... ....+......++|++++.|+...... ....... ..........++.++..+... .....
T Consensus 81 ~div~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~--~~~~~~~---~~~~~~~~~~~~~~i~~s~~~~~~~~~~ 154 (365)
T cd03807 81 PDVVHTWMYHAD-LYGGLAARLAGVPPVIWGIRHSDLDLG--KKSTRLV---ARLRRLLSSFIPLIVANSAAAAEYHQAI 154 (365)
T ss_pred CCEEEecccccc-HHHHHHHHhcCCCcEEEEecCCccccc--chhHhHH---HHHHHHhccccCeEEeccHHHHHHHHHc
Confidence 999999876652 333333332267899999998433211 0000000 001112223334433333331 11122
Q ss_pred cCCCCCEEEeCCCCCCcccccccCchhhHHHHHhhCCCCCCeEEEEEEeccccccccccHHHHHHHHHHhhhhcccCCCC
Q 002535 294 AFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENES 373 (911)
Q Consensus 294 ~id~~ki~VIpg~gVD~~~f~~~~~~~k~~lR~~lgi~~d~~vIL~VGsrl~~~KGiKg~dlLLeAl~~L~~~~p~~~~~ 373 (911)
+++.+++.++|+ |+|...+.+... .....+++++++++.++++++|+ +.+. ||++.+++|+..+.++.++
T Consensus 155 ~~~~~~~~vi~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~G~-~~~~---K~~~~li~a~~~l~~~~~~---- 224 (365)
T cd03807 155 GYPPKKIVVIPN-GVDTERFSPDLD-ARARLREELGLPEDTFLIGIVAR-LHPQ---KDHATLLRAAALLLKKFPN---- 224 (365)
T ss_pred CCChhheeEeCC-CcCHHhcCCccc-chHHHHHhcCCCCCCeEEEEecc-cchh---cCHHHHHHHHHHHHHhCCC----
Confidence 455678888985 888744333221 24456678888888999999994 5544 9999999999999887777
Q ss_pred CCCEEEEEEe-CCCCCchHHHHHHHHH-HcCCCCccEEEccccccHHHHHHHcCeeEEcccCCcCCccHHHHHHHHcCCC
Q 002535 374 NSPIKVMILS-GDSTSNYSVVIEAIAH-NLHYPLGVVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKP 451 (911)
Q Consensus 374 ~~~vkLvIVG-G~~~e~Y~~~Le~la~-~lgL~~~~V~flG~v~dV~~~L~~ADVfVlPS~~E~qGFplvLLEAMA~G~P 451 (911)
++++++| |+.. ..++.... +.++.+ +|.++|..+++.++|+.||++++||..| |+|++++|||+||+|
T Consensus 225 ---~~l~i~G~~~~~----~~~~~~~~~~~~~~~-~v~~~g~~~~~~~~~~~adi~v~ps~~e--~~~~~~~Ea~a~g~P 294 (365)
T cd03807 225 ---ARLLLVGDGPDR----ANLELLALKELGLED-KVILLGERSDVPALLNALDVFVLSSLSE--GFPNVLLEAMACGLP 294 (365)
T ss_pred ---eEEEEecCCcch----hHHHHHHHHhcCCCc-eEEEccccccHHHHHHhCCEEEeCCccc--cCCcHHHHHHhcCCC
Confidence 9999999 6654 44555555 788887 8999999999999999999999999997 799999999999999
Q ss_pred EEecCCCccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHH
Q 002535 452 IIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSV-KNLMALETIEGYAMLLE 526 (911)
Q Consensus 452 VIaTd~gGi~EiV~dg~nGlLv~~~D~eaLAeaI~~LLsd~~~p~~~~~mg~~ar~~a-e~Fs~e~ia~~y~~Lye 526 (911)
||+++.++..|++.+ +|++++++|+++++++|.+++++ ++.+.++++++++.+ ++|+|++++++|.++|+
T Consensus 295 vI~~~~~~~~e~~~~--~g~~~~~~~~~~l~~~i~~l~~~---~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~y~ 365 (365)
T cd03807 295 VVATDVGDNAELVGD--TGFLVPPGDPEALAEAIEALLAD---PALRQALGEAARERIEENFSIEAMVEAYEELYR 365 (365)
T ss_pred EEEcCCCChHHHhhc--CCEEeCCCCHHHHHHHHHHHHhC---hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhC
Confidence 999999999999988 89999999999999999999999 999999999999999 66999999999999874
No 11
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=100.00 E-value=3.1e-32 Score=312.29 Aligned_cols=342 Identities=16% Similarity=0.197 Sum_probs=252.1
Q ss_pred CEEEEEeCCCCCChHHHHHHHHHHHHHHCCCeEEEEEeCCCcch---hhhh--hcCceEEEecc----------------
Q 002535 145 PQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAH---EVWR--NIGVPVAILQT---------------- 203 (911)
Q Consensus 145 prIalI~~~L~~GGae~~v~~LAk~L~~~GyeV~V~t~~~g~~~---~~~~--~~gi~v~~l~~---------------- 203 (911)
++|+++++..- .-.|..+.+-+.+|.++|++|.+++...+... .... ...-++..++.
T Consensus 1 m~ia~~~~~~P-~~setFi~~ei~~l~~~G~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (406)
T PRK15427 1 MKVGFFLLKFP-LSSETFVLNQITAFIDMGFEVEIVALQKGDTQNTHAAWTKYNLAAKTRWLQDEPQGKVAKLRHRASQT 79 (406)
T ss_pred CeEEEEeccCC-ccchhhHHHHHHHHHHcCceEEEEEccCCCccccccchhhhccccceeecCcCccchHHHHhhhhhhH
Confidence 37888887765 66799999999999999999999997553211 1111 11111111100
Q ss_pred ---------------ch---hH---------HHhhhhcCccEEEEcCcchhHHHHHHhhC-CCCCCCEEEEEcCchhhHH
Q 002535 204 ---------------GR---EK---------ASFVNWLNYDGILVNSLEAKVVISNIMQE-PFKSLPLVWTIHEGTLATR 255 (911)
Q Consensus 204 ---------------~~---~l---------~~lI~~~kpDIIhvhs~~~~~~ia~L~~~-~~~giPvV~tiH~~~L~~~ 255 (911)
.. .. ...++..+||+||+|..... ..+..+.. ...+.|+++|+|+......
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~diihaH~~~~~-~~~~~~~~~~~~~~~~~~t~Hg~d~~~~ 158 (406)
T PRK15427 80 LRGIHRKNTWKALNLKRYGAESRNLILSAICAQVATPFVADVFIAHFGPAG-VTAAKLRELGVLRGKIATIFHGIDISSR 158 (406)
T ss_pred hhhhcccchhccCChhhhhhhhHHHHHHHHHhhhhccCCCCEEEEcCChHH-HHHHHHHHhCCCCCCeEEEEcccccccc
Confidence 00 00 11124468999999997663 44443322 1234577889998543311
Q ss_pred -HHHHHhhcchhhHhhHHHHHhhcceEEecCCcc--ccccccCCCCCEEEeCCCCCCcccccccCchhhHHHHHhhCCCC
Q 002535 256 -ARNYASSGQLELLNDWKKVFNRATVVVFPDYVL--PMMYSAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKP 332 (911)
Q Consensus 256 -l~k~~~~~~d~lIs~~~~~~~~a~~vvfpn~~l--~ii~~~id~~ki~VIpg~gVD~~~f~~~~~~~k~~lR~~lgi~~ 332 (911)
.... . -......++.++.++..+... .+...+++.+++.+|| +|+|...|.+... ....
T Consensus 159 ~~~~~---~----~~~~~~~~~~ad~vv~~S~~~~~~l~~~g~~~~ki~vi~-nGvd~~~f~~~~~----------~~~~ 220 (406)
T PRK15427 159 EVLNH---Y----TPEYQQLFRRGDLMLPISDLWAGRLQKMGCPPEKIAVSR-MGVDMTRFSPRPV----------KAPA 220 (406)
T ss_pred hhhhh---h----hHHHHHHHHhCCEEEECCHHHHHHHHHcCCCHHHEEEcC-CCCCHHHcCCCcc----------ccCC
Confidence 1000 0 012344556777776665541 1122345667899999 4999855433211 1123
Q ss_pred CCeEEEEEEeccccccccccHHHHHHHHHHhhhhcccCCCCCCCEEEEEEe-CCCCCchHHHHHHHHHHcCCCCccEEEc
Q 002535 333 DDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHM 411 (911)
Q Consensus 333 d~~vIL~VGsrl~~~KGiKg~dlLLeAl~~L~~~~p~~~~~~~~vkLvIVG-G~~~e~Y~~~Le~la~~lgL~~~~V~fl 411 (911)
+.+.++++|+ +.+. ||++.+++|++.+.+++++ ++++|+| |+.. +.++++++++++++ +|.|+
T Consensus 221 ~~~~il~vGr-l~~~---Kg~~~ll~a~~~l~~~~~~-------~~l~ivG~G~~~----~~l~~~~~~~~l~~-~V~~~ 284 (406)
T PRK15427 221 TPLEIISVAR-LTEK---KGLHVAIEACRQLKEQGVA-------FRYRILGIGPWE----RRLRTLIEQYQLED-VVEMP 284 (406)
T ss_pred CCeEEEEEeC-cchh---cCHHHHHHHHHHHHhhCCC-------EEEEEEECchhH----HHHHHHHHHcCCCC-eEEEe
Confidence 5578999995 4444 9999999999999887777 9999999 7765 78999999999998 99999
Q ss_pred ccc--ccHHHHHHHcCeeEEcccC------CcCCccHHHHHHHHcCCCEEecCCCccccccccCccEEEEcCCCHHHHHH
Q 002535 412 AAE--GDVDSVLNTADVVIYGSFL------EEQTFPEILVKALCFRKPIIAPDLSNIRKYVDDRVNGYLFPKENIKALTH 483 (911)
Q Consensus 412 G~v--~dV~~~L~~ADVfVlPS~~------E~qGFplvLLEAMA~G~PVIaTd~gGi~EiV~dg~nGlLv~~~D~eaLAe 483 (911)
|++ +++.++|+.||++|+||.. | |+|++++||||||+|||+|+.+|++|+|.++.+|++++++|++++++
T Consensus 285 G~~~~~el~~~l~~aDv~v~pS~~~~~g~~E--g~p~~llEAma~G~PVI~t~~~g~~E~v~~~~~G~lv~~~d~~~la~ 362 (406)
T PRK15427 285 GFKPSHEVKAMLDDADVFLLPSVTGADGDME--GIPVALMEAMAVGIPVVSTLHSGIPELVEADKSGWLVPENDAQALAQ 362 (406)
T ss_pred CCCCHHHHHHHHHhCCEEEECCccCCCCCcc--CccHHHHHHHhCCCCEEEeCCCCchhhhcCCCceEEeCCCCHHHHHH
Confidence 987 7899999999999999975 5 89999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH-cCCCcHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHH
Q 002535 484 IILQVIT-NGKISPFARNIASIGRRSV-KNLMALETIEGYAMLLEN 527 (911)
Q Consensus 484 aI~~LLs-d~~~p~~~~~mg~~ar~~a-e~Fs~e~ia~~y~~Lye~ 527 (911)
+|.++++ | ++.+++|+++|++.+ ++|+++.+++++.++|++
T Consensus 363 ai~~l~~~d---~~~~~~~~~~ar~~v~~~f~~~~~~~~l~~~~~~ 405 (406)
T PRK15427 363 RLAAFSQLD---TDELAPVVKRAREKVETDFNQQVINRELASLLQA 405 (406)
T ss_pred HHHHHHhCC---HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Confidence 9999999 9 888999999999999 669999999999999976
No 12
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=100.00 E-value=4.2e-32 Score=299.93 Aligned_cols=344 Identities=19% Similarity=0.236 Sum_probs=251.2
Q ss_pred EEEEEeCCCCCChHHHHHHHHHHHHHHCCCeEEEEEeCCCcchhhhhhcCceEEEecc----------chhHHHhhhhcC
Q 002535 146 QLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQT----------GREKASFVNWLN 215 (911)
Q Consensus 146 rIalI~~~L~~GGae~~v~~LAk~L~~~GyeV~V~t~~~g~~~~~~~~~gi~v~~l~~----------~~~l~~lI~~~k 215 (911)
+|+++++++..||++.++.++++.|.+.||+|++++...+........... ...+.. ...+..+++..+
T Consensus 1 ~il~~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (360)
T cd04951 1 KILYVITGLGLGGAEKQVVDLADQFVAKGHQVAIISLTGESEVKPPIDATI-ILNLNMSKNPLSFLLALWKLRKILRQFK 79 (360)
T ss_pred CeEEEecCCCCCCHHHHHHHHHHhcccCCceEEEEEEeCCCCccchhhccc-eEEecccccchhhHHHHHHHHHHHHhcC
Confidence 478899999999999999999999999999999998765432222111111 111111 112345566789
Q ss_pred ccEEEEcCcchhHHHHHHhhCCCCCCCEEEEEcCchhhHHHHHHHhhcchhhHhhHHHHHhhcceEEecCCc---ccccc
Q 002535 216 YDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRATVVVFPDYV---LPMMY 292 (911)
Q Consensus 216 pDIIhvhs~~~~~~ia~L~~~~~~giPvV~tiH~~~L~~~l~k~~~~~~d~lIs~~~~~~~~a~~vvfpn~~---l~ii~ 292 (911)
||+||+|..... .+..++.....++|++.+.|+............+... ..+..+...+.. .....
T Consensus 80 pdiv~~~~~~~~-~~~~l~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~----------~~~~~~~~~s~~~~~~~~~~ 148 (360)
T cd04951 80 PDVVHAHMFHAN-IFARLLRLFLPSPPLICTAHSKNEGGRLRMLAYRLTD----------FLSDLTTNVSKEALDYFIAS 148 (360)
T ss_pred CCEEEEcccchH-HHHHHHHhhCCCCcEEEEeeccCchhHHHHHHHHHHh----------hccCceEEEcHHHHHHHHhc
Confidence 999999987763 5555544435678999999974322111111111111 011111111111 01111
Q ss_pred ccCCCCCEEEeCCCCCCcccccccCchhhHHHHHhhCCCCCCeEEEEEEeccccccccccHHHHHHHHHHhhhhcccCCC
Q 002535 293 SAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENE 372 (911)
Q Consensus 293 ~~id~~ki~VIpg~gVD~~~f~~~~~~~k~~lR~~lgi~~d~~vIL~VGsrl~~~KGiKg~dlLLeAl~~L~~~~p~~~~ 372 (911)
..+..+++.+||+ |+|...+... .......++++++.+++++++++|+. .+. ||++.+++|+.++.++.|+
T Consensus 149 ~~~~~~~~~~i~n-g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~g~~-~~~---kg~~~li~a~~~l~~~~~~--- 219 (360)
T cd04951 149 KAFNANKSFVVYN-GIDTDRFRKD-PARRLKIRNALGVKNDTFVILAVGRL-VEA---KDYPNLLKAFAKLLSDYLD--- 219 (360)
T ss_pred cCCCcccEEEEcc-ccchhhcCcc-hHHHHHHHHHcCcCCCCEEEEEEeeC-chh---cCcHHHHHHHHHHHhhCCC---
Confidence 2245678999995 8887444332 22245677888888888999999954 444 9999999999999887777
Q ss_pred CCCCEEEEEEe-CCCCCchHHHHHHHHHHcCCCCccEEEccccccHHHHHHHcCeeEEcccCCcCCccHHHHHHHHcCCC
Q 002535 373 SNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKP 451 (911)
Q Consensus 373 ~~~~vkLvIVG-G~~~e~Y~~~Le~la~~lgL~~~~V~flG~v~dV~~~L~~ADVfVlPS~~E~qGFplvLLEAMA~G~P 451 (911)
++|+|+| |+.. +.+++.++++++.+ +|.++|+.+++..+|+.||++++||..| |+|++++|||++|+|
T Consensus 220 ----~~l~i~G~g~~~----~~~~~~~~~~~~~~-~v~~~g~~~~~~~~~~~ad~~v~~s~~e--~~~~~~~Ea~a~G~P 288 (360)
T cd04951 220 ----IKLLIAGDGPLR----ATLERLIKALGLSN-RVKLLGLRDDIAAYYNAADLFVLSSAWE--GFGLVVAEAMACELP 288 (360)
T ss_pred ----eEEEEEcCCCcH----HHHHHHHHhcCCCC-cEEEecccccHHHHHHhhceEEeccccc--CCChHHHHHHHcCCC
Confidence 9999999 7765 77888888888887 8999999999999999999999999998 799999999999999
Q ss_pred EEecCCCccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHH
Q 002535 452 IIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSV-KNLMALETIEGYAMLLE 526 (911)
Q Consensus 452 VIaTd~gGi~EiV~dg~nGlLv~~~D~eaLAeaI~~LLsd~~~p~~~~~mg~~ar~~a-e~Fs~e~ia~~y~~Lye 526 (911)
||+++.++..|++.+ +|++++++|+++++++|.+++++. +..+..++.+ ++.+ ++|+|+.++++|.++|+
T Consensus 289 vI~~~~~~~~e~i~~--~g~~~~~~~~~~~~~~i~~ll~~~--~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~y~ 359 (360)
T cd04951 289 VVATDAGGVREVVGD--SGLIVPISDPEALANKIDEILKMS--GEERDIIGAR-RERIVKKFSINSIVQQWLTLYT 359 (360)
T ss_pred EEEecCCChhhEecC--CceEeCCCCHHHHHHHHHHHHhCC--HHHHHHHHHH-HHHHHHhcCHHHHHHHHHHHhh
Confidence 999999999999987 799999999999999999999640 4445566666 6666 77999999999999986
No 13
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=100.00 E-value=9.1e-32 Score=303.32 Aligned_cols=346 Identities=14% Similarity=0.184 Sum_probs=251.2
Q ss_pred EEEEEeCCCCCChHHHHHHHHHHHHHHCCCeEEEEEeCCCcchhh----hhh-c-CceEEEeccch--hH----HHh---
Q 002535 146 QLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEV----WRN-I-GVPVAILQTGR--EK----ASF--- 210 (911)
Q Consensus 146 rIalI~~~L~~GGae~~v~~LAk~L~~~GyeV~V~t~~~g~~~~~----~~~-~-gi~v~~l~~~~--~l----~~l--- 210 (911)
||+++.+.+..||.+..+.++++.|.+.||+|.+++..+.+.... ... . +..+ .++... .. ...
T Consensus 1 ki~~~~~~~~~GGv~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~ 79 (372)
T cd03792 1 KVLHVNSTPYGGGVAEILHSLVPLMRDLGVDTRWEVIKGDPEFFNVTKKFHNALQGADI-ELSEEEKEIYLEWNEENAER 79 (372)
T ss_pred CeEEEeCCCCCCcHHHHHHHHHHHHHHcCCCceEEecCCChhHHHHHHHhhHhhcCCCC-CCCHHHHHHHHHHHHHHhcc
Confidence 589999999999999999999999999999999998766432111 011 1 3222 121111 00 111
Q ss_pred -hhhcCccEEEEcCcchhHHHHHHhhCCCCCCCEEEEEcCchhhHHHHHHHhhcchhhHhhHHHHHhhcceEEecCCccc
Q 002535 211 -VNWLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRATVVVFPDYVLP 289 (911)
Q Consensus 211 -I~~~kpDIIhvhs~~~~~~ia~L~~~~~~giPvV~tiH~~~L~~~l~k~~~~~~d~lIs~~~~~~~~a~~vvfpn~~l~ 289 (911)
+...+||+||+|++... .+.... ...++|+|++.|....... .... ......+..++.+++++...
T Consensus 80 ~~~~~~~Dvv~~h~~~~~-~~~~~~--~~~~~~~i~~~H~~~~~~~--~~~~-------~~~~~~~~~~d~~i~~~~~~- 146 (372)
T cd03792 80 PLLDLDADVVVIHDPQPL-ALPLFK--KKRGRPWIWRCHIDLSSPN--RRVW-------DFLQPYIEDYDAAVFHLPEY- 146 (372)
T ss_pred ccccCCCCEEEECCCCch-hHHHhh--hcCCCeEEEEeeeecCCCc--HHHH-------HHHHHHHHhCCEEeecHHHh-
Confidence 22468999999988752 332222 2347899999996321110 0000 01122334455555554221
Q ss_pred cccccCCCCCEEEeCCCCCCccccc--ccCchhhHHHHHhhCCCCCCeEEEEEEeccccccccccHHHHHHHHHHhhhhc
Q 002535 290 MMYSAFDAGNYYVIPGSPAKAWEAD--TNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEV 367 (911)
Q Consensus 290 ii~~~id~~ki~VIpg~gVD~~~f~--~~~~~~k~~lR~~lgi~~d~~vIL~VGsrl~~~KGiKg~dlLLeAl~~L~~~~ 367 (911)
....+...++ +|| +++|..... .+.+......+++++++++.++++++| ++.+. ||++.+++|+..+.++.
T Consensus 147 -~~~~~~~~~~-vip-ngvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vg-rl~~~---Kg~~~ll~a~~~l~~~~ 219 (372)
T cd03792 147 -VPPQVPPRKV-IIP-PSIDPLSGKNRELSPADIEYILEKYGIDPERPYITQVS-RFDPW---KDPFGVIDAYRKVKERV 219 (372)
T ss_pred -cCCCCCCceE-EeC-CCCCCCccccCCCCHHHHHHHHHHhCCCCCCcEEEEEe-ccccc---cCcHHHHHHHHHHHhhC
Confidence 1223344444 888 488864211 223333456778899988999999999 56665 99999999999998776
Q ss_pred ccCCCCCCCEEEEEEe-CCCCC-chHHHHHHHHHHcCCCCccEEEcccc----ccHHHHHHHcCeeEEcccCCcCCccHH
Q 002535 368 SVENESNSPIKVMILS-GDSTS-NYSVVIEAIAHNLHYPLGVVKHMAAE----GDVDSVLNTADVVIYGSFLEEQTFPEI 441 (911)
Q Consensus 368 p~~~~~~~~vkLvIVG-G~~~e-~Y~~~Le~la~~lgL~~~~V~flG~v----~dV~~~L~~ADVfVlPS~~E~qGFplv 441 (911)
|+ ++|+|+| |+..+ .+.+.++++.+..++.+ +|.++|.. +++..+|++||++++||..| |||++
T Consensus 220 ~~-------~~l~i~G~g~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~ad~~v~~s~~E--g~g~~ 289 (372)
T cd03792 220 PD-------PQLVLVGSGATDDPEGWIVYEEVLEYAEGDP-DIHVLTLPPVSDLEVNALQRASTVVLQKSIRE--GFGLT 289 (372)
T ss_pred CC-------CEEEEEeCCCCCCchhHHHHHHHHHHhCCCC-CeEEEecCCCCHHHHHHHHHhCeEEEeCCCcc--CCCHH
Confidence 76 9999999 75432 23344566666667776 79999864 78999999999999999999 79999
Q ss_pred HHHHHHcCCCEEecCCCccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH-HhcCHHHHHHH
Q 002535 442 LVKALCFRKPIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSV-KNLMALETIEG 520 (911)
Q Consensus 442 LLEAMA~G~PVIaTd~gGi~EiV~dg~nGlLv~~~D~eaLAeaI~~LLsd~~~p~~~~~mg~~ar~~a-e~Fs~e~ia~~ 520 (911)
++||||||+|||+++.+|+.+++.++.+|++++ ++++++++|.+++++ ++.+++|++++++.+ ++|+|+.++++
T Consensus 290 ~lEA~a~G~Pvv~s~~~~~~~~i~~~~~g~~~~--~~~~~a~~i~~ll~~---~~~~~~~~~~a~~~~~~~~s~~~~~~~ 364 (372)
T cd03792 290 VTEALWKGKPVIAGPVGGIPLQIEDGETGFLVD--TVEEAAVRILYLLRD---PELRRKMGANAREHVRENFLITRHLKD 364 (372)
T ss_pred HHHHHHcCCCEEEcCCCCchhhcccCCceEEeC--CcHHHHHHHHHHHcC---HHHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence 999999999999999999999999999999987 578899999999999 999999999999998 67999999999
Q ss_pred HHHHHHH
Q 002535 521 YAMLLEN 527 (911)
Q Consensus 521 y~~Lye~ 527 (911)
|.++|++
T Consensus 365 ~~~~~~~ 371 (372)
T cd03792 365 YLYLISK 371 (372)
T ss_pred HHHHHHh
Confidence 9999986
No 14
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=100.00 E-value=1e-31 Score=302.62 Aligned_cols=355 Identities=15% Similarity=0.155 Sum_probs=257.0
Q ss_pred CEEEEEeCCCC---CChHHHHHHHHHHHHHHCCCeEEEEEeCCCcchhhhhhcCceEEEeccchh-------H-------
Q 002535 145 PQLALVFPDLL---IDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGRE-------K------- 207 (911)
Q Consensus 145 prIalI~~~L~---~GGae~~v~~LAk~L~~~GyeV~V~t~~~g~~~~~~~~~gi~v~~l~~~~~-------l------- 207 (911)
++|++|.+... .||++.++.++++.|.+. ++|.|++...+.. ...++++...+.... +
T Consensus 1 mkI~~i~~~~~p~~~GG~~~~v~~l~~~l~~~-~~v~v~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (388)
T TIGR02149 1 MKVTVLTREYPPNVYGGAGVHVEELTRELARL-MDVDVRCFGDQRF----DSEGLTVKGYRPWSELKEANKALGTFSVDL 75 (388)
T ss_pred CeeEEEecccCccccccHhHHHHHHHHHHHHh-cCeeEEcCCCchh----cCCCeEEEEecChhhccchhhhhhhhhHHH
Confidence 46888877664 399999999999999987 7888877654321 122344332221110 0
Q ss_pred HHhhhhcCccEEEEcCcchhHHHHHHhhCCCCCCCEEEEEcCchhhHHHH-HHHhhcchhhHhhHHHHHhhcceEEecCC
Q 002535 208 ASFVNWLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRAR-NYASSGQLELLNDWKKVFNRATVVVFPDY 286 (911)
Q Consensus 208 ~~lI~~~kpDIIhvhs~~~~~~ia~L~~~~~~giPvV~tiH~~~L~~~l~-k~~~~~~d~lIs~~~~~~~~a~~vvfpn~ 286 (911)
.......++|+||+|++... ..+.++. +..++|+|++.|+........ ..........-......+..++.++..+.
T Consensus 76 ~~~~~~~~~divh~~~~~~~-~~~~~~~-~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~ 153 (388)
T TIGR02149 76 AMANDPVDADVVHSHTWYTF-LAGHLAK-KLYDKPLVVTAHSLEPLRPWKEEQLGGGYKLSSWAEKTAIEAADRVIAVSG 153 (388)
T ss_pred HHhhCCCCCCeEeecchhhh-hHHHHHH-HhcCCCEEEEeecccccccccccccccchhHHHHHHHHHHhhCCEEEEccH
Confidence 00111247999999987663 4444433 356899999999742111000 00000000001123445667787777765
Q ss_pred cccc----ccccCCCCCEEEeCCCCCCcccccccCchhhHHHHHhhCCCCCCeEEEEEEeccccccccccHHHHHHHHHH
Q 002535 287 VLPM----MYSAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLP 362 (911)
Q Consensus 287 ~l~i----i~~~id~~ki~VIpg~gVD~~~f~~~~~~~k~~lR~~lgi~~d~~vIL~VGsrl~~~KGiKg~dlLLeAl~~ 362 (911)
.... .+.+++..++.+||+ |+|...+.+ ..+...+.+++++++.++++++| ++.+. ||++.+++|++.
T Consensus 154 ~~~~~~~~~~~~~~~~~i~vi~n-g~~~~~~~~---~~~~~~~~~~~~~~~~~~i~~~G-rl~~~---Kg~~~li~a~~~ 225 (388)
T TIGR02149 154 GMREDILKYYPDLDPEKVHVIYN-GIDTKEYKP---DDGNVVLDRYGIDRSRPYILFVG-RITRQ---KGVPHLLDAVHY 225 (388)
T ss_pred HHHHHHHHHcCCCCcceEEEecC-CCChhhcCC---CchHHHHHHhCCCCCceEEEEEc-ccccc---cCHHHHHHHHHH
Confidence 5211 122455678999995 888744332 23456778889888889999999 45554 999999999998
Q ss_pred hhhhcccCCCCCCCEEEEEEe-CCCCCchHHHHHHHHHHcCCCCccEEEc-ccc--ccHHHHHHHcCeeEEcccCCcCCc
Q 002535 363 LFSEVSVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHM-AAE--GDVDSVLNTADVVIYGSFLEEQTF 438 (911)
Q Consensus 363 L~~~~p~~~~~~~~vkLvIVG-G~~~e~Y~~~Le~la~~lgL~~~~V~fl-G~v--~dV~~~L~~ADVfVlPS~~E~qGF 438 (911)
+.. + ++++++| |+....+.+.+++.+++++....+|.++ |.. +++.++|+.||++|+||..| ||
T Consensus 226 l~~---~-------~~l~i~g~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~aDv~v~ps~~e--~~ 293 (388)
T TIGR02149 226 IPK---D-------VQVVLCAGAPDTPEVAEEVRQAVALLDRNRTGIIWINKMLPKEELVELLSNAEVFVCPSIYE--PL 293 (388)
T ss_pred Hhh---c-------CcEEEEeCCCCcHHHHHHHHHHHHHhccccCceEEecCCCCHHHHHHHHHhCCEEEeCCccC--CC
Confidence 853 3 7888888 6666566677888888776643357765 443 78999999999999999998 79
Q ss_pred cHHHHHHHHcCCCEEecCCCccccccccCccEEEEcCCCH------HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH-Hh
Q 002535 439 PEILVKALCFRKPIIAPDLSNIRKYVDDRVNGYLFPKENI------KALTHIILQVITNGKISPFARNIASIGRRSV-KN 511 (911)
Q Consensus 439 plvLLEAMA~G~PVIaTd~gGi~EiV~dg~nGlLv~~~D~------eaLAeaI~~LLsd~~~p~~~~~mg~~ar~~a-e~ 511 (911)
|++++|||+||+|||+|+.||++|++.++.+|++++++|+ ++++++|.++++| ++.+++|++++++.+ ++
T Consensus 294 g~~~lEA~a~G~PvI~s~~~~~~e~i~~~~~G~~~~~~~~~~~~~~~~l~~~i~~l~~~---~~~~~~~~~~a~~~~~~~ 370 (388)
T TIGR02149 294 GIVNLEAMACGTPVVASATGGIPEVVVDGETGFLVPPDNSDADGFQAELAKAINILLAD---PELAKKMGIAGRKRAEEE 370 (388)
T ss_pred ChHHHHHHHcCCCEEEeCCCCHHHHhhCCCceEEcCCCCCcccchHHHHHHHHHHHHhC---HHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999998 9999999999999 999999999999998 67
Q ss_pred cCHHHHHHHHHHHHHHHh
Q 002535 512 LMALETIEGYAMLLENVL 529 (911)
Q Consensus 512 Fs~e~ia~~y~~Lye~vL 529 (911)
|+|+.++++|.++|++++
T Consensus 371 ~s~~~~~~~~~~~y~~~~ 388 (388)
T TIGR02149 371 FSWGSIAKKTVEMYRKVL 388 (388)
T ss_pred CCHHHHHHHHHHHHHhhC
Confidence 999999999999999864
No 15
>PRK00654 glgA glycogen synthase; Provisional
Probab=100.00 E-value=1.8e-31 Score=311.19 Aligned_cols=359 Identities=16% Similarity=0.169 Sum_probs=253.8
Q ss_pred CEEEEEeCCC----CCChHHHHHHHHHHHHHHCCCeEEEEEeCCCcchhh-------------------hhhcCceEEEe
Q 002535 145 PQLALVFPDL----LIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEV-------------------WRNIGVPVAIL 201 (911)
Q Consensus 145 prIalI~~~L----~~GGae~~v~~LAk~L~~~GyeV~V~t~~~g~~~~~-------------------~~~~gi~v~~l 201 (911)
++|++|.... ..||...++..|+++|+++||+|.|+++..+..... ....|++++.+
T Consensus 1 m~i~~vs~e~~P~~k~GGl~~~v~~L~~~L~~~G~~V~v~~p~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~v 80 (466)
T PRK00654 1 MKILFVASECAPLIKTGGLGDVVGALPKALAALGHDVRVLLPGYPAIREKLRDAQVVGRLDLFTVLFGHLEGDGVPVYLI 80 (466)
T ss_pred CeEEEEEcccccCcccCcHHHHHHHHHHHHHHCCCcEEEEecCCcchhhhhcCceEEEEeeeEEEEEEeEEcCCceEEEE
Confidence 4788887654 479999999999999999999999999865432111 01134555433
Q ss_pred ccch------------h----------HHHhhhh--cCccEEEEcCcchhHHHHHHhhCC----CCCCCEEEEEcCchhh
Q 002535 202 QTGR------------E----------KASFVNW--LNYDGILVNSLEAKVVISNIMQEP----FKSLPLVWTIHEGTLA 253 (911)
Q Consensus 202 ~~~~------------~----------l~~lI~~--~kpDIIhvhs~~~~~~ia~L~~~~----~~giPvV~tiH~~~L~ 253 (911)
.... . ....+.. .+|||||+|.+.+ +.++.++... ..++|+|+|+|+....
T Consensus 81 ~~~~~~~~~~~y~~~d~~~r~~~f~~~~~~~~~~~~~~pDiiH~h~w~~-~~~~~~l~~~~~~~~~~~~~v~TiH~~~~~ 159 (466)
T PRK00654 81 DAPHLFDRPSGYGYPDNGERFAFFSWAAAEFAEGLDPRPDIVHAHDWHT-GLIPALLKEKYWRGYPDIKTVFTIHNLAYQ 159 (466)
T ss_pred eCHHHcCCCCCCCCcChHHHHHHHHHHHHHHHHhcCCCCceEEECCcHH-HHHHHHHHHhhhccCCCCCEEEEcCCCcCC
Confidence 2100 0 1112222 4899999999777 3555555422 2478999999983221
Q ss_pred ----H-HHHHHH----hhcchh-----hHhhHHHHHhhcceEEecCCcc--ccccc----------cCCCCCEEEeCCCC
Q 002535 254 ----T-RARNYA----SSGQLE-----LLNDWKKVFNRATVVVFPDYVL--PMMYS----------AFDAGNYYVIPGSP 307 (911)
Q Consensus 254 ----~-~l~k~~----~~~~d~-----lIs~~~~~~~~a~~vvfpn~~l--~ii~~----------~id~~ki~VIpg~g 307 (911)
. .+.... ....+. .+...+..+..++.++..+... .+... .....++.+||| |
T Consensus 160 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vitvS~~~~~ei~~~~~~~gl~~~~~~~~~ki~vI~N-G 238 (466)
T PRK00654 160 GLFPAEILGELGLPAEAFHLEGLEFYGQISFLKAGLYYADRVTTVSPTYAREITTPEFGYGLEGLLRARSGKLSGILN-G 238 (466)
T ss_pred CcCCHHHHHHcCCChHHcCchhhhcCCcccHHHHHHHhcCcCeeeCHHHHHHhccccCCcChHHHHHhcccCceEecC-C
Confidence 0 000000 000000 0122334556677666554431 11110 123568999995 9
Q ss_pred CCcccccccCc----------------hhhHHHHHhhCCCC-CCeEEEEEEeccccccccccHHHHHHHHHHhhhhcccC
Q 002535 308 AKAWEADTNMD----------------LYNDTVRVKMGFKP-DDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVE 370 (911)
Q Consensus 308 VD~~~f~~~~~----------------~~k~~lR~~lgi~~-d~~vIL~VGsrl~~~KGiKg~dlLLeAl~~L~~~~p~~ 370 (911)
+|...|.+... ..+..+++++|+++ +.++++++| ++.+. ||++.+++|++++.++ +
T Consensus 239 id~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~l~~~~gl~~~~~~~i~~vG-Rl~~~---KG~~~li~a~~~l~~~--~- 311 (466)
T PRK00654 239 IDYDIWNPETDPLLAANYSADDLEGKAENKRALQERFGLPDDDAPLFAMVS-RLTEQ---KGLDLVLEALPELLEQ--G- 311 (466)
T ss_pred CCccccCCccCcccccccChhhhhchHHHHHHHHHHhCCCCCCCcEEEEee-ccccc---cChHHHHHHHHHHHhc--C-
Confidence 99876655321 11456788999875 678999999 55555 9999999999998754 3
Q ss_pred CCCCCCEEEEEEe-CCCCCchHHHHHHHHHHcCCCCccEE-Ecccccc-HHHHHHHcCeeEEcccCCcCCccHHHHHHHH
Q 002535 371 NESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVK-HMAAEGD-VDSVLNTADVVIYGSFLEEQTFPEILVKALC 447 (911)
Q Consensus 371 ~~~~~~vkLvIVG-G~~~e~Y~~~Le~la~~lgL~~~~V~-flG~v~d-V~~~L~~ADVfVlPS~~E~qGFplvLLEAMA 447 (911)
++|+|+| |+. .+.+.+++++++++ . ++. +.|+.++ +..+|++||++|+||.+| |||++++|||+
T Consensus 312 ------~~lvivG~g~~--~~~~~l~~l~~~~~--~-~v~~~~g~~~~~~~~~~~~aDv~v~PS~~E--~~gl~~lEAma 378 (466)
T PRK00654 312 ------GQLVLLGTGDP--ELEEAFRALAARYP--G-KVGVQIGYDEALAHRIYAGADMFLMPSRFE--PCGLTQLYALR 378 (466)
T ss_pred ------CEEEEEecCcH--HHHHHHHHHHHHCC--C-cEEEEEeCCHHHHHHHHhhCCEEEeCCCCC--CchHHHHHHHH
Confidence 8999999 642 35578888888775 3 354 5677644 578999999999999999 79999999999
Q ss_pred cCCCEEecCCCccccccccC------ccEEEEcCCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHHHhcCHHHHH
Q 002535 448 FRKPIIAPDLSNIRKYVDDR------VNGYLFPKENIKALTHIILQVIT---NGKISPFARNIASIGRRSVKNLMALETI 518 (911)
Q Consensus 448 ~G~PVIaTd~gGi~EiV~dg------~nGlLv~~~D~eaLAeaI~~LLs---d~~~p~~~~~mg~~ar~~ae~Fs~e~ia 518 (911)
||+|||++++||++|+|.++ .+|++++++|+++|+++|.++++ + ++.+.+|+.++.+ ++|+|+.++
T Consensus 379 ~G~p~V~~~~gG~~e~v~~~~~~~~~~~G~lv~~~d~~~la~~i~~~l~~~~~---~~~~~~~~~~~~~--~~fsw~~~a 453 (466)
T PRK00654 379 YGTLPIVRRTGGLADTVIDYNPEDGEATGFVFDDFNAEDLLRALRRALELYRQ---PPLWRALQRQAMA--QDFSWDKSA 453 (466)
T ss_pred CCCCEEEeCCCCccceeecCCCCCCCCceEEeCCCCHHHHHHHHHHHHHHhcC---HHHHHHHHHHHhc--cCCChHHHH
Confidence 99999999999999999888 89999999999999999999887 5 6677788877753 679999999
Q ss_pred HHHHHHHHHHhc
Q 002535 519 EGYAMLLENVLK 530 (911)
Q Consensus 519 ~~y~~Lye~vL~ 530 (911)
++|.++|+++++
T Consensus 454 ~~~~~lY~~~~~ 465 (466)
T PRK00654 454 EEYLELYRRLLG 465 (466)
T ss_pred HHHHHHHHHHhh
Confidence 999999998864
No 16
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=100.00 E-value=2.3e-31 Score=300.21 Aligned_cols=350 Identities=16% Similarity=0.159 Sum_probs=246.5
Q ss_pred CEEEEEeCCCCCChHHHHHHHHHHHHHHCCCeEEEEEeCCCcchh--hhhhcCceEEEecc------chh---H----H-
Q 002535 145 PQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHE--VWRNIGVPVAILQT------GRE---K----A- 208 (911)
Q Consensus 145 prIalI~~~L~~GGae~~v~~LAk~L~~~GyeV~V~t~~~g~~~~--~~~~~gi~v~~l~~------~~~---l----~- 208 (911)
++|+++++++..||+++++..+|+.|.+.||+|++++...++... ....-++.+..... ... + .
T Consensus 1 mkIl~~~~~~~~gG~e~~~~~la~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 80 (392)
T cd03805 1 LRVAFIHPDLGIGGAERLVVDAALALQSRGHEVTIYTSHHDPSHCFEETKDGTLPVRVRGDWLPRSIFGRFHILCAYLRM 80 (392)
T ss_pred CeEEEECCCCCCchHHHHHHHHHHHHHhCCCeEEEEcCCCCchhcchhccCCeeEEEEEeEEEcchhhHhHHHHHHHHHH
Confidence 479999999999999999999999999999999999975433111 11111233322211 000 0 0
Q ss_pred -------HhhhhcCccEEEEcCcchhHHHHHHhhCCCCCCCEEEEEcCchhhHHH-HHHHhhcchhh-HhhHHHHHhhcc
Q 002535 209 -------SFVNWLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRA-RNYASSGQLEL-LNDWKKVFNRAT 279 (911)
Q Consensus 209 -------~lI~~~kpDIIhvhs~~~~~~ia~L~~~~~~giPvV~tiH~~~L~~~l-~k~~~~~~d~l-Is~~~~~~~~a~ 279 (911)
..+...++|+||+|+.... . ..+. . ..+.|+|++.|........ ........... .......++.++
T Consensus 81 ~~~~~~~~~~~~~~~Dvi~~~~~~~~-~-~~~~-~-~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad 156 (392)
T cd03805 81 LYLALYLLLLPDEKYDVFIVDQVSAC-V-PLLK-L-FSPSKILFYCHFPDQLLAQRGSLLKRLYRKPFDWLEEFTTGMAD 156 (392)
T ss_pred HHHHHHHHhcccCCCCEEEEcCcchH-H-HHHH-H-hcCCcEEEEEecChHHhcCCCcHHHHHHHHHHHHHHHHHhhCce
Confidence 0234468999999876552 2 1111 1 2237999999952211000 00000000111 112334566677
Q ss_pred eEEecCCcccc----ccccCCCCCEEEeCCCCCCcccccccCchhhHHHHHhhCCCCCCeEEEEEEeccccccccccHHH
Q 002535 280 VVVFPDYVLPM----MYSAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHAL 355 (911)
Q Consensus 280 ~vvfpn~~l~i----i~~~id~~ki~VIpg~gVD~~~f~~~~~~~k~~lR~~lgi~~d~~vIL~VGsrl~~~KGiKg~dl 355 (911)
.+++.+..... .+......++.+|++ ++|...+.+.... ..+......++.++++++| ++.+. ||++.
T Consensus 157 ~ii~~s~~~~~~~~~~~~~~~~~~~~vi~n-~vd~~~~~~~~~~---~~~~~~~~~~~~~~i~~~g-rl~~~---Kg~~~ 228 (392)
T cd03805 157 KIVVNSNFTASVFKKTFPSLAKNPREVVYP-CVDTDSFESTSED---PDPGLLIPKSGKKTFLSIN-RFERK---KNIAL 228 (392)
T ss_pred EEEEcChhHHHHHHHHhcccccCCcceeCC-CcCHHHcCccccc---ccccccccCCCceEEEEEe-eeccc---CChHH
Confidence 77776554221 112222233457774 8887544332211 1223344567788999999 55555 99999
Q ss_pred HHHHHHHhhhhc---ccCCCCCCCEEEEEEe-CCCC----CchHHHHHHHHHH-cCCCCccEEEcccc--ccHHHHHHHc
Q 002535 356 ILRALLPLFSEV---SVENESNSPIKVMILS-GDST----SNYSVVIEAIAHN-LHYPLGVVKHMAAE--GDVDSVLNTA 424 (911)
Q Consensus 356 LLeAl~~L~~~~---p~~~~~~~~vkLvIVG-G~~~----e~Y~~~Le~la~~-lgL~~~~V~flG~v--~dV~~~L~~A 424 (911)
+++|+..+.++. |+ ++|+++| |+.. ..|.+.+++++++ +++.+ +|.|+|++ +++..+|+.|
T Consensus 229 ll~a~~~l~~~~~~~~~-------~~l~i~G~~~~~~~~~~~~~~~l~~~~~~~~~l~~-~V~f~g~~~~~~~~~~l~~a 300 (392)
T cd03805 229 AIEAFAILKDKLAEFKN-------VRLVIAGGYDPRVAENVEYLEELQRLAEELLLLED-QVIFLPSISDSQKELLLSSA 300 (392)
T ss_pred HHHHHHHHHhhcccccC-------eEEEEEcCCCCCCchhHHHHHHHHHHHHHhcCCCc-eEEEeCCCChHHHHHHHhhC
Confidence 999999998876 56 9999999 5432 2456788899998 89988 99999987 6678999999
Q ss_pred CeeEEcccCCcCCccHHHHHHHHcCCCEEecCCCccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHH
Q 002535 425 DVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASI 504 (911)
Q Consensus 425 DVfVlPS~~E~qGFplvLLEAMA~G~PVIaTd~gGi~EiV~dg~nGlLv~~~D~eaLAeaI~~LLsd~~~p~~~~~mg~~ 504 (911)
|++++||..| |||++++||||||+|||+++.+|..|++.++.+|+++++ |+++++++|.+++++ ++.+++|+++
T Consensus 301 d~~l~~s~~E--~~g~~~lEAma~G~PvI~s~~~~~~e~i~~~~~g~~~~~-~~~~~a~~i~~l~~~---~~~~~~~~~~ 374 (392)
T cd03805 301 RALLYTPSNE--HFGIVPLEAMYAGKPVIACNSGGPLETVVDGETGFLCEP-TPEEFAEAMLKLAND---PDLADRMGAA 374 (392)
T ss_pred eEEEECCCcC--CCCchHHHHHHcCCCEEEECCCCcHHHhccCCceEEeCC-CHHHHHHHHHHHHhC---hHHHHHHHHH
Confidence 9999999988 799999999999999999999999999999999999976 899999999999999 9999999999
Q ss_pred HHHHH-HhcCHHHHHHH
Q 002535 505 GRRSV-KNLMALETIEG 520 (911)
Q Consensus 505 ar~~a-e~Fs~e~ia~~ 520 (911)
|++.+ ++|+|+.++++
T Consensus 375 a~~~~~~~~s~~~~~~~ 391 (392)
T cd03805 375 GRKRVKEKFSTEAFAER 391 (392)
T ss_pred HHHHHHHhcCHHHHhhh
Confidence 99998 67999998875
No 17
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=100.00 E-value=3.9e-31 Score=300.43 Aligned_cols=329 Identities=14% Similarity=0.164 Sum_probs=239.9
Q ss_pred CCCCChHHHHHHHHHHHHHHCCCeEEEEEeCCCcchhh-hhhcCceEEEeccc-------------------hhHHHhhh
Q 002535 153 DLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEV-WRNIGVPVAILQTG-------------------REKASFVN 212 (911)
Q Consensus 153 ~L~~GGae~~v~~LAk~L~~~GyeV~V~t~~~g~~~~~-~~~~gi~v~~l~~~-------------------~~l~~lI~ 212 (911)
.-..||+|.++..+++.|.. +|++++.....+... ....|+.++.++.. ..+...+.
T Consensus 17 ~~~~g~ve~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (380)
T PRK15484 17 PRGAAAVETWIYQVAKRTSI---PNRIACIKNPGYPEYTKVNDNCDIHYIGFSRIYKRLFQKWTRLDPLPYSQRILNIAH 93 (380)
T ss_pred CccccHHHHHHHHhhhhccC---CeeEEEecCCCCCchhhccCCCceEEEEeccccchhhhhhhccCchhHHHHHHHHHH
Confidence 34579999999999999943 999999876432222 22223333333221 11222233
Q ss_pred h---cCccEEEEcCcchhHHHHHHhhCCCCCCCEEEEEcCchhhHHHHHHHhhcchhhHhhHHHHHhhcceEEecCCccc
Q 002535 213 W---LNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRATVVVFPDYVLP 289 (911)
Q Consensus 213 ~---~kpDIIhvhs~~~~~~ia~L~~~~~~giPvV~tiH~~~L~~~l~k~~~~~~d~lIs~~~~~~~~a~~vvfpn~~l~ 289 (911)
. .++|+||+|+... ....+. ....+.|+|++.|+...... .. .++.+++++....
T Consensus 94 ~~~~~~~~vi~v~~~~~--~~~~~~-~~~~~~~~v~~~h~~~~~~~-----~~--------------~~~~ii~~S~~~~ 151 (380)
T PRK15484 94 KFTITKDSVIVIHNSMK--LYRQIR-ERAPQAKLVMHMHNAFEPEL-----LD--------------KNAKIIVPSQFLK 151 (380)
T ss_pred hcCCCCCcEEEEeCcHH--hHHHHH-hhCCCCCEEEEEecccChhH-----hc--------------cCCEEEEcCHHHH
Confidence 3 4699999998654 333333 33667899999996421111 11 1222333322211
Q ss_pred c-ccccCCCCCEEEeCCCCCCcccccccCchhhHHHHHhhCCCCCCeEEEEEEeccccccccccHHHHHHHHHHhhhhcc
Q 002535 290 M-MYSAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVS 368 (911)
Q Consensus 290 i-i~~~id~~ki~VIpg~gVD~~~f~~~~~~~k~~lR~~lgi~~d~~vIL~VGsrl~~~KGiKg~dlLLeAl~~L~~~~p 368 (911)
. ........++.+||+ |+|...+. +......+++++++++..+++++| ++.+. ||++.+++|+..+.+++|
T Consensus 152 ~~~~~~~~~~~i~vIpn-gvd~~~~~---~~~~~~~~~~~~~~~~~~~il~~G-rl~~~---Kg~~~Li~A~~~l~~~~p 223 (380)
T PRK15484 152 KFYEERLPNADISIVPN-GFCLETYQ---SNPQPNLRQQLNISPDETVLLYAG-RISPD---KGILLLMQAFEKLATAHS 223 (380)
T ss_pred HHHHhhCCCCCEEEecC-CCCHHHcC---CcchHHHHHHhCCCCCCeEEEEec-cCccc---cCHHHHHHHHHHHHHhCC
Confidence 1 112234567889995 89874433 333445677888888888999999 45554 999999999999998888
Q ss_pred cCCCCCCCEEEEEEe-CCC-----CCchHHHHHHHHHHcCCCCccEEEcccc--ccHHHHHHHcCeeEEcccCCcCCccH
Q 002535 369 VENESNSPIKVMILS-GDS-----TSNYSVVIEAIAHNLHYPLGVVKHMAAE--GDVDSVLNTADVVIYGSFLEEQTFPE 440 (911)
Q Consensus 369 ~~~~~~~~vkLvIVG-G~~-----~e~Y~~~Le~la~~lgL~~~~V~flG~v--~dV~~~L~~ADVfVlPS~~E~qGFpl 440 (911)
+ ++|+|+| |+. ...|.+.+++++++++ . +|.|+|++ +++.++|++||++|+||.+++ |||+
T Consensus 224 ~-------~~lvivG~g~~~~~~~~~~~~~~l~~~~~~l~--~-~v~~~G~~~~~~l~~~~~~aDv~v~pS~~~E-~f~~ 292 (380)
T PRK15484 224 N-------LKLVVVGDPTASSKGEKAAYQKKVLEAAKRIG--D-RCIMLGGQPPEKMHNYYPLADLVVVPSQVEE-AFCM 292 (380)
T ss_pred C-------eEEEEEeCCccccccchhHHHHHHHHHHHhcC--C-cEEEeCCCCHHHHHHHHHhCCEEEeCCCCcc-cccc
Confidence 7 9999999 643 2346667777777554 4 69999986 689999999999999998633 7999
Q ss_pred HHHHHHHcCCCEEecCCCccccccccCccEE-EEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH-HhcCHHHHH
Q 002535 441 ILVKALCFRKPIIAPDLSNIRKYVDDRVNGY-LFPKENIKALTHIILQVITNGKISPFARNIASIGRRSV-KNLMALETI 518 (911)
Q Consensus 441 vLLEAMA~G~PVIaTd~gGi~EiV~dg~nGl-Lv~~~D~eaLAeaI~~LLsd~~~p~~~~~mg~~ar~~a-e~Fs~e~ia 518 (911)
+++||||||+|||+|+.||++|++.++.+|+ ++++.|+++++++|.++++| ++. .+|++++++.+ ++|+|+.++
T Consensus 293 ~~lEAma~G~PVI~s~~gg~~Eiv~~~~~G~~l~~~~d~~~la~~I~~ll~d---~~~-~~~~~~ar~~~~~~fsw~~~a 368 (380)
T PRK15484 293 VAVEAMAAGKPVLASTKGGITEFVLEGITGYHLAEPMTSDSIISDINRTLAD---PEL-TQIAEQAKDFVFSKYSWEGVT 368 (380)
T ss_pred HHHHHHHcCCCEEEeCCCCcHhhcccCCceEEEeCCCCHHHHHHHHHHHHcC---HHH-HHHHHHHHHHHHHhCCHHHHH
Confidence 9999999999999999999999999999998 56889999999999999999 764 78999999988 779999999
Q ss_pred HHHHHHHHHHh
Q 002535 519 EGYAMLLENVL 529 (911)
Q Consensus 519 ~~y~~Lye~vL 529 (911)
++|.++|++..
T Consensus 369 ~~~~~~l~~~~ 379 (380)
T PRK15484 369 QRFEEQIHNWF 379 (380)
T ss_pred HHHHHHHHHhc
Confidence 99999998753
No 18
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=100.00 E-value=4.5e-31 Score=322.68 Aligned_cols=369 Identities=14% Similarity=0.122 Sum_probs=264.8
Q ss_pred CCCCCEEEEEeCC-------------CCCChHHHHHHHHHHHHHHCC--CeEEEEEeCCCcch------hhh--------
Q 002535 141 GYRKPQLALVFPD-------------LLIDPQQLQMVTIAIALREIG--YAIQVYSLEDGRAH------EVW-------- 191 (911)
Q Consensus 141 ~~rkprIalI~~~-------------L~~GGae~~v~~LAk~L~~~G--yeV~V~t~~~g~~~------~~~-------- 191 (911)
.-++..|++|..+ -..||+.+++..||++|.++| |+|.|+|....+.. ...
T Consensus 166 ~~~~~~I~liS~HG~~~~~~~elg~~~DtGGq~vYV~ELAraLa~~~gv~~Vdl~TR~~~~~~~~~~y~~p~e~~~~~~~ 245 (1050)
T TIGR02468 166 KEKKLYIVLISLHGLVRGENMELGRDSDTGGQVKYVVELARALGSMPGVYRVDLLTRQVSSPDVDWSYGEPTEMLTPRSS 245 (1050)
T ss_pred ccCceEEEEEccccCccccCcccCCCCCCCChHHHHHHHHHHHHhCCCCCEEEEEeCCcCccccccccCCcccccccccc
Confidence 4566778777642 236899999999999999999 99999997543210 000
Q ss_pred --------hhcCceEEEeccchh--------H-----------HHhhhh--------------cCccEEEEcCcchhHHH
Q 002535 192 --------RNIGVPVAILQTGRE--------K-----------ASFVNW--------------LNYDGILVNSLEAKVVI 230 (911)
Q Consensus 192 --------~~~gi~v~~l~~~~~--------l-----------~~lI~~--------------~kpDIIhvhs~~~~~~i 230 (911)
..-|+.+..+++... + ...+.. ..||+||+|....+ ..
T Consensus 246 ~~~~~~~~~~~g~rIvRip~GP~~~~l~Ke~L~~~l~ef~d~~l~~~~~~~~~~~~~~~~~~~~~pDvIHaHyw~sG-~a 324 (1050)
T TIGR02468 246 ENDGDEMGESSGAYIIRIPFGPRDKYIPKEELWPYIPEFVDGALSHIVNMSKVLGEQIGSGHPVWPYVIHGHYADAG-DS 324 (1050)
T ss_pred ccccccccCCCCeEEEEeccCCCCCCcCHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccCCCCCEEEECcchHH-HH
Confidence 112555555442110 0 111111 13999999988874 55
Q ss_pred HHHhhCCCCCCCEEEEEcCchhhH-HHHHHHhh------------cchhhHhhHHHHHhhcceEEecCCcc----ccccc
Q 002535 231 SNIMQEPFKSLPLVWTIHEGTLAT-RARNYASS------------GQLELLNDWKKVFNRATVVVFPDYVL----PMMYS 293 (911)
Q Consensus 231 a~L~~~~~~giPvV~tiH~~~L~~-~l~k~~~~------------~~d~lIs~~~~~~~~a~~vvfpn~~l----~ii~~ 293 (911)
+.++.+ ..++|+|+|.|. +.. +..+.... .....+......+..++.++..+... .-.|.
T Consensus 325 a~~L~~-~lgVP~V~T~HS--Lgr~K~~~ll~~g~~~~~~~~~~y~~~~Ri~~Ee~~l~~Ad~VIasT~qE~~eq~~lY~ 401 (1050)
T TIGR02468 325 AALLSG-ALNVPMVLTGHS--LGRDKLEQLLKQGRMSKEEINSTYKIMRRIEAEELSLDASEIVITSTRQEIEEQWGLYD 401 (1050)
T ss_pred HHHHHH-hhCCCEEEECcc--chhhhhhhhcccccccccccccccchHHHHHHHHHHHHhcCEEEEeCHHHHHHHHHHhc
Confidence 555544 678999999995 221 11110000 01223344566677788777665441 11232
Q ss_pred cCC---------------------CCCEEEeCCCCCCcccccccCchh-h-----------------HHHHHhhCCCCCC
Q 002535 294 AFD---------------------AGNYYVIPGSPAKAWEADTNMDLY-N-----------------DTVRVKMGFKPDD 334 (911)
Q Consensus 294 ~id---------------------~~ki~VIpg~gVD~~~f~~~~~~~-k-----------------~~lR~~lgi~~d~ 334 (911)
.++ ..++.||| +|+|...|.+..... . ..++ .+..+++.
T Consensus 402 ~~~~~~~~~~~~~~~~gv~~~g~~~~ri~VIP-pGVD~~~F~P~~~~~~~~~~~~~~~~~~~~~~~~~~l~-r~~~~pdk 479 (1050)
T TIGR02468 402 GFDVILERKLRARARRGVSCYGRFMPRMAVIP-PGMEFSHIVPHDGDMDGETEGNEEHPAKPDPPIWSEIM-RFFTNPRK 479 (1050)
T ss_pred cCCchhhhhhhhhhcccccccccCCCCeEEeC-CCCcHHHccCCCccccchhcccccccccccchhhHHHH-hhcccCCC
Confidence 222 23899999 499998776642211 0 1122 33456778
Q ss_pred eEEEEEEeccccccccccHHHHHHHHHHhhhhcccCCCCCCCEEEEEEe-CCCCC-------chHHHHHHHHHHcCCCCc
Q 002535 335 LVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILS-GDSTS-------NYSVVIEAIAHNLHYPLG 406 (911)
Q Consensus 335 ~vIL~VGsrl~~~KGiKg~dlLLeAl~~L~~~~p~~~~~~~~vkLvIVG-G~~~e-------~Y~~~Le~la~~lgL~~~ 406 (911)
++|+++| ++.+. ||++.||+|+..+.+..+. .++. +|+| |+..+ .+...++++++++++.+
T Consensus 480 pvIL~VG-RL~p~---KGi~~LIeAf~~L~~l~~~-----~nL~-LIiG~gdd~d~l~~~~~~~l~~L~~li~~lgL~g- 548 (1050)
T TIGR02468 480 PMILALA-RPDPK---KNITTLVKAFGECRPLREL-----ANLT-LIMGNRDDIDEMSSGSSSVLTSVLKLIDKYDLYG- 548 (1050)
T ss_pred cEEEEEc-CCccc---cCHHHHHHHHHHhHhhccC-----CCEE-EEEecCchhhhhhccchHHHHHHHHHHHHhCCCC-
Confidence 8999999 55555 9999999999998753221 1265 4667 54321 23456888999999998
Q ss_pred cEEEcccc--ccHHHHHHHc----CeeEEcccCCcCCccHHHHHHHHcCCCEEecCCCccccccccCccEEEEcCCCHHH
Q 002535 407 VVKHMAAE--GDVDSVLNTA----DVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSNIRKYVDDRVNGYLFPKENIKA 480 (911)
Q Consensus 407 ~V~flG~v--~dV~~~L~~A----DVfVlPS~~E~qGFplvLLEAMA~G~PVIaTd~gGi~EiV~dg~nGlLv~~~D~ea 480 (911)
+|.|+|+. +++..+|+.| |+||+||.+| |||++++||||||+|||+|+.||++|+|.++.+|+++++.|+++
T Consensus 549 ~V~FlG~v~~edvp~lYr~Ad~s~DVFV~PS~~E--gFGLvlLEAMAcGlPVVASdvGG~~EII~~g~nGlLVdP~D~ea 626 (1050)
T TIGR02468 549 QVAYPKHHKQSDVPDIYRLAAKTKGVFINPAFIE--PFGLTLIEAAAHGLPMVATKNGGPVDIHRVLDNGLLVDPHDQQA 626 (1050)
T ss_pred eEEecCCCCHHHHHHHHHHhhhcCCeeeCCcccC--CCCHHHHHHHHhCCCEEEeCCCCcHHHhccCCcEEEECCCCHHH
Confidence 99999975 8899999988 6999999999 79999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcC
Q 002535 481 LTHIILQVITNGKISPFARNIASIGRRSVKNLMALETIEGYAMLLENVLKL 531 (911)
Q Consensus 481 LAeaI~~LLsd~~~p~~~~~mg~~ar~~ae~Fs~e~ia~~y~~Lye~vL~~ 531 (911)
|+++|.++++| ++.+++|+.+|++.+++|+|+.++++|.+.+..+...
T Consensus 627 LA~AL~~LL~D---pelr~~m~~~gr~~v~~FSWe~ia~~yl~~i~~~~~~ 674 (1050)
T TIGR02468 627 IADALLKLVAD---KQLWAECRQNGLKNIHLFSWPEHCKTYLSRIASCRPR 674 (1050)
T ss_pred HHHHHHHHhhC---HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhcc
Confidence 99999999999 9999999999999998899999999999999988643
No 19
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=100.00 E-value=6.9e-31 Score=290.86 Aligned_cols=333 Identities=15% Similarity=0.163 Sum_probs=240.5
Q ss_pred EEEEEeCCCCCChHHHHHHHHHHHHHHCCCeEEEEEeCCCc--chhhhhhcCceEEEeccc--------hhHHHhhhhcC
Q 002535 146 QLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGR--AHEVWRNIGVPVAILQTG--------REKASFVNWLN 215 (911)
Q Consensus 146 rIalI~~~L~~GGae~~v~~LAk~L~~~GyeV~V~t~~~g~--~~~~~~~~gi~v~~l~~~--------~~l~~lI~~~k 215 (911)
||+++.+++..||.+..+.++++.|.+.||+|++++..... ........++.+..++.. ..+...++..+
T Consensus 1 kIl~~~~~~~~GG~~~~~~~l~~~L~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (358)
T cd03812 1 KILHIVGTMNRGGIETFIMNYYRNLDRSKIQFDFLVTSKEEGDYDDEIEKLGGKIYYIPARKKNPLKYFKKLYKLIKKNK 80 (358)
T ss_pred CEEEEeCCCCCccHHHHHHHHHHhcCccceEEEEEEeCCCCcchHHHHHHcCCeEEEecCCCccHHHHHHHHHHHHhcCC
Confidence 58899999999999999999999999999999999987644 233344455555433221 22344456789
Q ss_pred ccEEEEcCcchhHHHHHHhhCCCCCCC-EEEEEcCchhhHHHHHHHhhcchhhHhhHHHHHhhcceEEecCCcc-ccccc
Q 002535 216 YDGILVNSLEAKVVISNIMQEPFKSLP-LVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRATVVVFPDYVL-PMMYS 293 (911)
Q Consensus 216 pDIIhvhs~~~~~~ia~L~~~~~~giP-vV~tiH~~~L~~~l~k~~~~~~d~lIs~~~~~~~~a~~vvfpn~~l-~ii~~ 293 (911)
||+||+|..... .+..+..+. .+.| ++++.|+.............. ..........++.++.++... .....
T Consensus 81 ~Dvv~~~~~~~~-~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~i~~s~~~~~~~~~ 154 (358)
T cd03812 81 YDIVHVHGSSAS-GFILLAAKK-AGVKVRIAHSHNTSDSHDKKKKILKY----KVLRKLINRLATDYLACSEEAGKWLFG 154 (358)
T ss_pred CCEEEEeCcchh-HHHHHHHhh-CCCCeEEEEeccccccccccchhhHH----HHHHHHHHhcCCEEEEcCHHHHHHHHh
Confidence 999999998753 444444332 3445 466777632211100000000 001122233445555544331 11111
Q ss_pred cCCCCCEEEeCCCCCCcccccccCchhhHHHHHhhCCCCCCeEEEEEEeccccccccccHHHHHHHHHHhhhhcccCCCC
Q 002535 294 AFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENES 373 (911)
Q Consensus 294 ~id~~ki~VIpg~gVD~~~f~~~~~~~k~~lR~~lgi~~d~~vIL~VGsrl~~~KGiKg~dlLLeAl~~L~~~~p~~~~~ 373 (911)
.....++.+||+ |+|...+.+... .+. .+.+.+..+++++++++| ++.+. ||++.+++|+..+.+++|+
T Consensus 155 ~~~~~~~~vi~n-gvd~~~~~~~~~-~~~-~~~~~~~~~~~~~i~~vG-r~~~~---Kg~~~li~a~~~l~~~~~~---- 223 (358)
T cd03812 155 KVKNKKFKVIPN-GIDLEKFIFNEE-IRK-KRRELGILEDKFVIGHVG-RFSEQ---KNHEFLIEIFAELLKKNPN---- 223 (358)
T ss_pred CCCcccEEEEec-cCcHHHcCCCch-hhh-HHHHcCCCCCCEEEEEEe-ccccc---cChHHHHHHHHHHHHhCCC----
Confidence 144578999995 888754433221 122 255667778889999999 45555 9999999999999988887
Q ss_pred CCCEEEEEEe-CCCCCchHHHHHHHHHHcCCCCccEEEccccccHHHHHHHcCeeEEcccCCcCCccHHHHHHHHcCCCE
Q 002535 374 NSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPI 452 (911)
Q Consensus 374 ~~~vkLvIVG-G~~~e~Y~~~Le~la~~lgL~~~~V~flG~v~dV~~~L~~ADVfVlPS~~E~qGFplvLLEAMA~G~PV 452 (911)
++++|+| |+.. ..+++.++++++.+ +|.++|+.+++.++|+.||++|+||..| |+|++++||||+|+||
T Consensus 224 ---~~l~ivG~g~~~----~~~~~~~~~~~~~~-~v~~~g~~~~~~~~~~~adi~v~ps~~E--~~~~~~lEAma~G~Pv 293 (358)
T cd03812 224 ---AKLLLVGDGELE----EEIKKKVKELGLED-KVIFLGVRNDVPELLQAMDVFLFPSLYE--GLPLVLIEAQASGLPC 293 (358)
T ss_pred ---eEEEEEeCCchH----HHHHHHHHhcCCCC-cEEEecccCCHHHHHHhcCEEEeccccc--CCCHHHHHHHHhCCCE
Confidence 9999999 7765 67888888889988 8999999999999999999999999988 7999999999999999
Q ss_pred EecCCCccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH
Q 002535 453 IAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSV 509 (911)
Q Consensus 453 IaTd~gGi~EiV~dg~nGlLv~~~D~eaLAeaI~~LLsd~~~p~~~~~mg~~ar~~a 509 (911)
|+|+.||.++++.++ .|++..++++++++++|.++++| ++.+++++..+....
T Consensus 294 I~s~~~~~~~~i~~~-~~~~~~~~~~~~~a~~i~~l~~~---~~~~~~~~~~~~~~~ 346 (358)
T cd03812 294 ILSDTITKEVDLTDL-VKFLSLDESPEIWAEEILKLKSE---DRRERSSESIKKKGL 346 (358)
T ss_pred EEEcCCchhhhhccC-ccEEeCCCCHHHHHHHHHHHHhC---cchhhhhhhhhhccc
Confidence 999999999999984 46777777899999999999999 998888877666554
No 20
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=100.00 E-value=1.4e-30 Score=301.43 Aligned_cols=345 Identities=13% Similarity=0.111 Sum_probs=242.5
Q ss_pred EEEEEeCCCCCChHHHHHHHHHHH----HHHCCC--------eEEEEEeCCCc------chhhhhhcCceEEEecc----
Q 002535 146 QLALVFPDLLIDPQQLQMVTIAIA----LREIGY--------AIQVYSLEDGR------AHEVWRNIGVPVAILQT---- 203 (911)
Q Consensus 146 rIalI~~~L~~GGae~~v~~LAk~----L~~~Gy--------eV~V~t~~~g~------~~~~~~~~gi~v~~l~~---- 203 (911)
+++++.+++..||+|+++.++|-+ +++.|- .|+++|.+-.+ ........++++..+..
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (578)
T PRK15490 163 RLALCTGSLGSGGAERQISRLAIEIARKYRQKGKIGGLKVEEPVELIIRSLTPELRQDFFLKEVLEEQVEVLEIAKITGN 242 (578)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHHhcccccccccccceeEEEeecCcccCcchhHHHHHhcCCceEEeeccchh
Confidence 489999999999999999955544 444443 56777654311 11122334444322211
Q ss_pred --------------------------chhHHHhhhhcCccEEEEcCcchhHHHHHHhhCCCCCCCEEEE-EcCc--hhhH
Q 002535 204 --------------------------GREKASFVNWLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWT-IHEG--TLAT 254 (911)
Q Consensus 204 --------------------------~~~l~~lI~~~kpDIIhvhs~~~~~~ia~L~~~~~~giPvV~t-iH~~--~L~~ 254 (911)
...+..+++..+||+||+|...+. .+..++.. ..++|++++ .|+. ....
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ir~~rpDIVHt~~~~a~-l~g~laA~-lagvpviv~~~h~~~~~~~~ 320 (578)
T PRK15490 243 LFDDATIESPELRLLLSHLPPVCKYGIKHLVPHLCERKLDYLSVWQDGAC-LMIALAAL-IAGVPRIQLGLRGLPPVVRK 320 (578)
T ss_pred hhhhccccchHHHHHHhcCChHHHHHHHHHHHHHHHcCCCEEEEcCcccH-HHHHHHHH-hcCCCEEEEeecccCCcchh
Confidence 012334467799999999987763 44444433 557898654 5541 1111
Q ss_pred HH--HHHH--------hhcchhhHhhHHHHHhhcceEEecCCccccccccCCCCCEEEeCCCCCCcccccccCchhhHHH
Q 002535 255 RA--RNYA--------SSGQLELLNDWKKVFNRATVVVFPDYVLPMMYSAFDAGNYYVIPGSPAKAWEADTNMDLYNDTV 324 (911)
Q Consensus 255 ~l--~k~~--------~~~~d~lIs~~~~~~~~a~~vvfpn~~l~ii~~~id~~ki~VIpg~gVD~~~f~~~~~~~k~~l 324 (911)
+. .++. ....+ +++.+..... ......+++.+++.+||| |+|...|.+.... ....
T Consensus 321 r~~~~e~~~~~~a~~i~~~sd-~v~~s~~v~~-----------~l~~~lgip~~KI~VIyN-GVD~~rf~p~~~~-~~~~ 386 (578)
T PRK15490 321 RLFKPEYEPLYQALAVVPGVD-FMSNNHCVTR-----------HYADWLKLEAKHFQVVYN-GVLPPSTEPSSEV-PHKI 386 (578)
T ss_pred hHHHHHHHHhhhhceeEecch-hhhccHHHHH-----------HHHHHhCCCHHHEEEEeC-CcchhhcCccchh-hHHH
Confidence 10 0000 00011 1111111100 000112456789999995 9998655443211 1122
Q ss_pred HH--hhCCCCCCeEEEEEEeccccccccccHHHHHHHHHHhhhhcccCCCCCCCEEEEEEe-CCCCCchHHHHHHHHHHc
Q 002535 325 RV--KMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNL 401 (911)
Q Consensus 325 R~--~lgi~~d~~vIL~VGsrl~~~KGiKg~dlLLeAl~~L~~~~p~~~~~~~~vkLvIVG-G~~~e~Y~~~Le~la~~l 401 (911)
+. ..+++++.++++++| ++... ||+..+++++..+.++.|+ ++|+|+| |+.. +.++++++++
T Consensus 387 r~~~~~~l~~~~~vIg~Vg-Rl~~~---Kg~~~LI~A~a~llk~~pd-------irLvIVGdG~~~----eeLk~la~el 451 (578)
T PRK15490 387 WQQFTQKTQDADTTIGGVF-RFVGD---KNPFAWIDFAARYLQHHPA-------TRFVLVGDGDLR----AEAQKRAEQL 451 (578)
T ss_pred HHHhhhccCCCCcEEEEEE-EEehh---cCHHHHHHHHHHHHhHCCC-------eEEEEEeCchhH----HHHHHHHHHc
Confidence 33 234456677899999 55555 9999999999998887777 9999999 7765 7899999999
Q ss_pred CCCCccEEEccccccHHHHHHHcCeeEEcccCCcCCccHHHHHHHHcCCCEEecCCCccccccccCccEEEEcCCCHHHH
Q 002535 402 HYPLGVVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSNIRKYVDDRVNGYLFPKENIKAL 481 (911)
Q Consensus 402 gL~~~~V~flG~v~dV~~~L~~ADVfVlPS~~E~qGFplvLLEAMA~G~PVIaTd~gGi~EiV~dg~nGlLv~~~D~eaL 481 (911)
++.+ +|+|+|+.+|+..+|+.+|++|+||.+| |||++++||||||+|||+|+.||.+|+|.++.+|++++++|++++
T Consensus 452 gL~d-~V~FlG~~~Dv~~~LaaADVfVlPS~~E--Gfp~vlLEAMA~GlPVVATdvGG~~EiV~dG~nG~LVp~~D~~aL 528 (578)
T PRK15490 452 GILE-RILFVGASRDVGYWLQKMNVFILFSRYE--GLPNVLIEAQMVGVPVISTPAGGSAECFIEGVSGFILDDAQTVNL 528 (578)
T ss_pred CCCC-cEEECCChhhHHHHHHhCCEEEEccccc--CccHHHHHHHHhCCCEEEeCCCCcHHHcccCCcEEEECCCChhhH
Confidence 9987 8999999999999999999999999998 799999999999999999999999999999999999999999999
Q ss_pred HHHH---HHHHHcCCCcHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHH
Q 002535 482 THII---LQVITNGKISPFARNIASIGRRSV-KNLMALETIEGYAMLLEN 527 (911)
Q Consensus 482 AeaI---~~LLsd~~~p~~~~~mg~~ar~~a-e~Fs~e~ia~~y~~Lye~ 527 (911)
++++ ..+.++ ......|+++|++.+ ++|+++.+++.|.++|.+
T Consensus 529 a~ai~lA~aL~~l---l~~~~~mg~~ARe~V~e~FS~e~Mv~~y~ki~~~ 575 (578)
T PRK15490 529 DQACRYAEKLVNL---WRSRTGICQQTQSFLQERFTVEHMVGTFVKTIAS 575 (578)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHh
Confidence 8887 445555 555567999999999 669999999999999976
No 21
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=100.00 E-value=7.8e-31 Score=286.99 Aligned_cols=351 Identities=15% Similarity=0.147 Sum_probs=247.2
Q ss_pred EEEEEeCCC--CCChHHHHHHHHHHHHHHCCCeEEEEEeCCCcchhhhhhcCce-----EEE----------eccchhHH
Q 002535 146 QLALVFPDL--LIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVP-----VAI----------LQTGREKA 208 (911)
Q Consensus 146 rIalI~~~L--~~GGae~~v~~LAk~L~~~GyeV~V~t~~~g~~~~~~~~~gi~-----v~~----------l~~~~~l~ 208 (911)
||++|++.+ ..||++..+.++++.|.+.||+|++++................ ... ........
T Consensus 1 kIl~i~~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (375)
T cd03821 1 KILHVIPSFDPKYGGPVRVVLNLSKALAKLGHEVTVATTDAGGDPLLVALNGVPVKLFSINVAYGLNLARYLFPPSLLAW 80 (375)
T ss_pred CeEEEcCCCCcccCCeehHHHHHHHHHHhcCCcEEEEecCCCCccchhhccCceeeecccchhhhhhhhhhccChhHHHH
Confidence 588899888 6899999999999999999999999998764422221111100 000 00000111
Q ss_pred HhhhhcCccEEEEcCcchhHHHHHHhhCCCCCCCEEEEEcCchhhHHH-HHHHhhcchhhHhhHHHHHhhcceEEecCCc
Q 002535 209 SFVNWLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRA-RNYASSGQLELLNDWKKVFNRATVVVFPDYV 287 (911)
Q Consensus 209 ~lI~~~kpDIIhvhs~~~~~~ia~L~~~~~~giPvV~tiH~~~L~~~l-~k~~~~~~d~lIs~~~~~~~~a~~vvfpn~~ 287 (911)
......++|+||+|+.............+..++|++++.|+....... ........ .........+..++.+.+.+..
T Consensus 81 ~~~~~~~~dii~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~s~~ 159 (375)
T cd03821 81 LRLNIREADIVHVHGLWSYPSLAAARAARKYGIPYVVSPHGMLDPWALPHKALKKRL-AWFLFERRLLQAAAAVHATSEQ 159 (375)
T ss_pred HHHhCCCCCEEEEecccchHHHHHHHHHHHhCCCEEEEccccccccccccchhhhHH-HHHHHHHHHHhcCCEEEECCHH
Confidence 123346899999998544222222221224678999999973221110 00000000 0011223334455555555433
Q ss_pred -cccccccCCCCCEEEeCCCCCCcccccccCchhhHHHHHhhCCCCCCeEEEEEEeccccccccccHHHHHHHHHHhhhh
Q 002535 288 -LPMMYSAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSE 366 (911)
Q Consensus 288 -l~ii~~~id~~ki~VIpg~gVD~~~f~~~~~~~k~~lR~~lgi~~d~~vIL~VGsrl~~~KGiKg~dlLLeAl~~L~~~ 366 (911)
...........++.++|+ |+|...+..... ...++.++.+++.++++++| ++.+. ||++.+++|+..+.++
T Consensus 160 ~~~~~~~~~~~~~~~vi~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~i~~~G-~~~~~---K~~~~li~a~~~l~~~ 231 (375)
T cd03821 160 EAAEIRRLGLKAPIAVIPN-GVDIPPFAALPS---RGRRRKFPILPDKRIILFLG-RLHPK---KGLDLLIEAFAKLAER 231 (375)
T ss_pred HHHHHHhhCCcccEEEcCC-CcChhccCcchh---hhhhhhccCCCCCcEEEEEe-Ccchh---cCHHHHHHHHHHhhhh
Confidence 222223344568899995 888754433221 11266777888889999999 45555 9999999999999988
Q ss_pred cccCCCCCCCEEEEEEe-CCCCCchHHHHHHHHHHcCCCCccEEEcccc--ccHHHHHHHcCeeEEcccCCcCCccHHHH
Q 002535 367 VSVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAAE--GDVDSVLNTADVVIYGSFLEEQTFPEILV 443 (911)
Q Consensus 367 ~p~~~~~~~~vkLvIVG-G~~~e~Y~~~Le~la~~lgL~~~~V~flG~v--~dV~~~L~~ADVfVlPS~~E~qGFplvLL 443 (911)
+++ ++++++| ++. .+...++.+++++++.+ +|+++|++ +++.++|+.||++|+||..| |||++++
T Consensus 232 ~~~-------~~l~i~G~~~~--~~~~~~~~~~~~~~~~~-~v~~~g~~~~~~~~~~~~~adv~v~ps~~e--~~~~~~~ 299 (375)
T cd03821 232 FPD-------WHLVIAGPDEG--GYRAELKQIAAALGLED-RVTFTGMLYGEDKAAALADADLFVLPSHSE--NFGIVVA 299 (375)
T ss_pred cCC-------eEEEEECCCCc--chHHHHHHHHHhcCccc-eEEEcCCCChHHHHHHHhhCCEEEeccccC--CCCcHHH
Confidence 777 9999999 533 23456666678889887 89999988 48999999999999999998 7999999
Q ss_pred HHHHcCCCEEecCCCccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH-HhcCHHHHHHHHH
Q 002535 444 KALCFRKPIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSV-KNLMALETIEGYA 522 (911)
Q Consensus 444 EAMA~G~PVIaTd~gGi~EiV~dg~nGlLv~~~D~eaLAeaI~~LLsd~~~p~~~~~mg~~ar~~a-e~Fs~e~ia~~y~ 522 (911)
|||+||+|||+++.+|..+++.+ ..|++++. ++++++++|.+++++ ++.+++|++++++.+ ++|+|+.+++.|.
T Consensus 300 Eama~G~PvI~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~i~~l~~~---~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 374 (375)
T cd03821 300 EALACGTPVVTTDKVPWQELIEY-GCGWVVDD-DVDALAAALRRALEL---PQRLKAMGENGRALVEERFSWTAIAQQLL 374 (375)
T ss_pred HHHhcCCCEEEcCCCCHHHHhhc-CceEEeCC-ChHHHHHHHHHHHhC---HHHHHHHHHHHHHHHHHhcCHHHHHHHhh
Confidence 99999999999999999999988 77888875 569999999999999 989999999999996 7799999999875
No 22
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=100.00 E-value=3.9e-30 Score=277.97 Aligned_cols=332 Identities=19% Similarity=0.242 Sum_probs=248.5
Q ss_pred EEEEEeCCCC-CChHHHHHHHHHHHHHHCCCeEEEEEeCCCcchhhhhhcCceEEE------------eccchhHHHhhh
Q 002535 146 QLALVFPDLL-IDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAI------------LQTGREKASFVN 212 (911)
Q Consensus 146 rIalI~~~L~-~GGae~~v~~LAk~L~~~GyeV~V~t~~~g~~~~~~~~~gi~v~~------------l~~~~~l~~lI~ 212 (911)
||+++++++. .||.++.+..+++.|.+.||+|.+++.............++.+.. ......+...++
T Consensus 1 kI~i~~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (348)
T cd03820 1 KILFVIPSLGNAGGAERVLSNLANALAEKGHEVTIISLDKGEPPFYELDPKIKVIDLGDKRDSKLLARFKKLRRLRKLLK 80 (348)
T ss_pred CeEEEeccccCCCChHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccCCccceeecccccccchhccccchHHHHHhhc
Confidence 5889999888 999999999999999999999999998765311111111222222 222344566677
Q ss_pred hcCccEEEEcCcchhHHHHHHhhCCCCCCCEEEEEcCchhhHHHHHHHhhcchhhHhhHHHHHhhcceEEecCCcccccc
Q 002535 213 WLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRATVVVFPDYVLPMMY 292 (911)
Q Consensus 213 ~~kpDIIhvhs~~~~~~ia~L~~~~~~giPvV~tiH~~~L~~~l~k~~~~~~d~lIs~~~~~~~~a~~vvfpn~~l~ii~ 292 (911)
..+||+||++.......+..+. ...+|++.+.|+............ ...+..++.++.+++.+.......
T Consensus 81 ~~~~d~i~~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~~~~~~~-------~~~~~~~~~~d~ii~~s~~~~~~~ 150 (348)
T cd03820 81 NNKPDVVISFLTSLLTFLASLG---LKIVKLIVSEHNSPDAYKKRLRRL-------LLRRLLYRRADAVVVLTEEDRALY 150 (348)
T ss_pred ccCCCEEEEcCchHHHHHHHHh---hccccEEEecCCCccchhhhhHHH-------HHHHHHHhcCCEEEEeCHHHHHHh
Confidence 7899999999977322222222 112599999997433221110000 023444556676666655543333
Q ss_pred ccCCCCCEEEeCCCCCCcccccccCchhhHHHHHhhCCCCCCeEEEEEEeccccccccccHHHHHHHHHHhhhhcccCCC
Q 002535 293 SAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENE 372 (911)
Q Consensus 293 ~~id~~ki~VIpg~gVD~~~f~~~~~~~k~~lR~~lgi~~d~~vIL~VGsrl~~~KGiKg~dlLLeAl~~L~~~~p~~~~ 372 (911)
......++.++|+ +++...+... ...+.+.++++|+... . ||++.+++|+..+.+..|+
T Consensus 151 ~~~~~~~~~vi~~-~~~~~~~~~~-------------~~~~~~~i~~~g~~~~-~---K~~~~l~~~~~~l~~~~~~--- 209 (348)
T cd03820 151 YKKFNKNVVVIPN-PLPFPPEEPS-------------SDLKSKRILAVGRLVP-Q---KGFDLLIEAWAKIAKKHPD--- 209 (348)
T ss_pred hccCCCCeEEecC-CcChhhcccc-------------CCCCCcEEEEEEeecc-c---cCHHHHHHHHHHHHhcCCC---
Confidence 3445678899994 7766322111 2345678999995444 4 9999999999999887777
Q ss_pred CCCCEEEEEEe-CCCCCchHHHHHHHHHHcCCCCccEEEccccccHHHHHHHcCeeEEcccCCcCCccHHHHHHHHcCCC
Q 002535 373 SNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKP 451 (911)
Q Consensus 373 ~~~~vkLvIVG-G~~~e~Y~~~Le~la~~lgL~~~~V~flG~v~dV~~~L~~ADVfVlPS~~E~qGFplvLLEAMA~G~P 451 (911)
++++|+| |+.. ..+++.++++++.+ +|.+.|..+++..+|+.||++++||..| |+|++++|||++|+|
T Consensus 210 ----~~l~i~G~~~~~----~~~~~~~~~~~~~~-~v~~~g~~~~~~~~~~~ad~~i~ps~~e--~~~~~~~Ea~a~G~P 278 (348)
T cd03820 210 ----WKLRIVGDGPER----EALEALIKELGLED-RVILLGFTKNIEEYYAKASIFVLTSRFE--GFPMVLLEAMAFGLP 278 (348)
T ss_pred ----eEEEEEeCCCCH----HHHHHHHHHcCCCC-eEEEcCCcchHHHHHHhCCEEEeCcccc--ccCHHHHHHHHcCCC
Confidence 9999999 6654 67778888889988 8999999899999999999999999998 799999999999999
Q ss_pred EEecCCCc-cccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHH
Q 002535 452 IIAPDLSN-IRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSVKNLMALETIEGYA 522 (911)
Q Consensus 452 VIaTd~gG-i~EiV~dg~nGlLv~~~D~eaLAeaI~~LLsd~~~p~~~~~mg~~ar~~ae~Fs~e~ia~~y~ 522 (911)
||+++.++ ..+++.++.+|+++++.|+++++++|.++++| ++.+++|++++++.+++|+|++++++|.
T Consensus 279 vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~ll~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (348)
T cd03820 279 VISFDCPTGPSEIIEDGVNGLLVPNGDVEALAEALLRLMED---EELRKRMGANARESAERFSIENIIKQWE 347 (348)
T ss_pred EEEecCCCchHhhhccCcceEEeCCCCHHHHHHHHHHHHcC---HHHHHHHHHHHHHHHHHhCHHHHHHHhc
Confidence 99999754 56777777799999999999999999999999 9999999999988889999999999885
No 23
>PLN02939 transferase, transferring glycosyl groups
Probab=99.98 E-value=5.4e-30 Score=309.13 Aligned_cols=366 Identities=11% Similarity=0.108 Sum_probs=263.6
Q ss_pred CCCCEEEEEeCCC----CCChHHHHHHHHHHHHHHCCCeEEEEEeCCCcchhh---------------h-----------
Q 002535 142 YRKPQLALVFPDL----LIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEV---------------W----------- 191 (911)
Q Consensus 142 ~rkprIalI~~~L----~~GGae~~v~~LAk~L~~~GyeV~V~t~~~g~~~~~---------------~----------- 191 (911)
.++++|++|...+ ..||..-++..|.++|+++||+|.|+.+..+..... +
T Consensus 479 ~~~mkILfVasE~aP~aKtGGLaDVv~sLPkAL~~~GhdV~VIlP~Y~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~v~~ 558 (977)
T PLN02939 479 SSGLHIVHIAAEMAPVAKVGGLADVVSGLGKALQKKGHLVEIVLPKYDCMQYDQIRNLKVLDVVVESYFDGNLFKNKIWT 558 (977)
T ss_pred CCCCEEEEEEcccccccccccHHHHHHHHHHHHHHcCCeEEEEeCCCcccChhhhhcccccceEEEEeecCceeEEEEEE
Confidence 5669999999866 479999999999999999999999999866432100 0
Q ss_pred -hhcCceEEEecc------------c---hhHH----------Hhhhh--cCccEEEEcCcchhHHHHHHhh-----CCC
Q 002535 192 -RNIGVPVAILQT------------G---REKA----------SFVNW--LNYDGILVNSLEAKVVISNIMQ-----EPF 238 (911)
Q Consensus 192 -~~~gi~v~~l~~------------~---~~l~----------~lI~~--~kpDIIhvhs~~~~~~ia~L~~-----~~~ 238 (911)
...|++++.+.. + .... .++.. .+|||||+|.+... .++.++. ..+
T Consensus 559 ~~~~GV~vyfId~~~~~~fF~R~~iYg~~Dn~~RF~~FsrAaLe~~~~~~~~PDIIH~HDW~Ta-LV~pll~~~y~~~~~ 637 (977)
T PLN02939 559 GTVEGLPVYFIEPQHPSKFFWRAQYYGEHDDFKRFSYFSRAALELLYQSGKKPDIIHCHDWQTA-FVAPLYWDLYAPKGF 637 (977)
T ss_pred EEECCeeEEEEecCCchhccCCCCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCEEEECCccHH-HHHHHHHHHHhhccC
Confidence 001344444421 0 0111 12222 58999999999984 5434332 124
Q ss_pred CCCCEEEEEcCchhhH-----HHH------HHHh--hc----chhhHhhHHHHHhhcceEEecCCc--cccc-c------
Q 002535 239 KSLPLVWTIHEGTLAT-----RAR------NYAS--SG----QLELLNDWKKVFNRATVVVFPDYV--LPMM-Y------ 292 (911)
Q Consensus 239 ~giPvV~tiH~~~L~~-----~l~------k~~~--~~----~d~lIs~~~~~~~~a~~vvfpn~~--l~ii-~------ 292 (911)
.++|+|+|+|+..... .+. .+.. .. ....+...+..+..++.+...+.. ..+. .
T Consensus 638 ~~~ktVfTIHNl~yQG~f~~~~l~~lGL~~~~l~~~d~le~~~~~~iN~LK~GIv~AD~VtTVSptYA~EI~te~G~GL~ 717 (977)
T PLN02939 638 NSARICFTCHNFEYQGTAPASDLASCGLDVHQLDRPDRMQDNAHGRINVVKGAIVYSNIVTTVSPTYAQEVRSEGGRGLQ 717 (977)
T ss_pred CCCcEEEEeCCCcCCCcCCHHHHHHcCCCHHHccChhhhhhccCCchHHHHHHHHhCCeeEeeeHHHHHHHHHHhccchH
Confidence 6689999999832110 010 0000 00 011133344455556766655443 1111 1
Q ss_pred --ccCCCCCEEEeCCCCCCcccccccCch----------------hhHHHHHhhCCCC---CCeEEEEEEeccccccccc
Q 002535 293 --SAFDAGNYYVIPGSPAKAWEADTNMDL----------------YNDTVRVKMGFKP---DDLVIAIVGTQFMYRGLWL 351 (911)
Q Consensus 293 --~~id~~ki~VIpg~gVD~~~f~~~~~~----------------~k~~lR~~lgi~~---d~~vIL~VGsrl~~~KGiK 351 (911)
-.....++.+|+| |||...|.+.... .+..+++++|++. +.++|++|| |+.+. |
T Consensus 718 ~~L~~~~~Kl~gIlN-GID~e~wnPatD~~L~~~Ys~~dl~GK~~nK~aLRkelGL~~~d~d~pLIg~VG-RL~~Q---K 792 (977)
T PLN02939 718 DTLKFHSKKFVGILN-GIDTDTWNPSTDRFLKVQYNANDLQGKAANKAALRKQLGLSSADASQPLVGCIT-RLVPQ---K 792 (977)
T ss_pred HHhccccCCceEEec-ceehhhcCCccccccccccChhhhhhhhhhhHHHHHHhCCCcccccceEEEEee-cCCcc---c
Confidence 1234578899995 9998766654321 1567899999974 468999999 55555 9
Q ss_pred cHHHHHHHHHHhhhhcccCCCCCCCEEEEEEe-CCCCCchHHHHHHHHHHcCCCCccEEEcccccc--HHHHHHHcCeeE
Q 002535 352 EHALILRALLPLFSEVSVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGD--VDSVLNTADVVI 428 (911)
Q Consensus 352 g~dlLLeAl~~L~~~~p~~~~~~~~vkLvIVG-G~~~e~Y~~~Le~la~~lgL~~~~V~flG~v~d--V~~~L~~ADVfV 428 (911)
|++++++|+..+.. ++ ++|+|+| |+.. .|...++++++++++.+ +|.|+|..++ ...+|+.||+||
T Consensus 793 GiDlLleA~~~Ll~--~d-------vqLVIvGdGp~~-~~e~eL~~La~~l~l~d-rV~FlG~~de~lah~IYAaADIFL 861 (977)
T PLN02939 793 GVHLIRHAIYKTAE--LG-------GQFVLLGSSPVP-HIQREFEGIADQFQSNN-NIRLILKYDEALSHSIYAASDMFI 861 (977)
T ss_pred ChHHHHHHHHHHhh--cC-------CEEEEEeCCCcH-HHHHHHHHHHHHcCCCC-eEEEEeccCHHHHHHHHHhCCEEE
Confidence 99999999998764 23 8999999 7643 45678889999999887 8999997744 458999999999
Q ss_pred EcccCCcCCccHHHHHHHHcCCCEEecCCCcccccccc---------CccEEEEcCCCHHHHHHHHHHHHH----cCCCc
Q 002535 429 YGSFLEEQTFPEILVKALCFRKPIIAPDLSNIRKYVDD---------RVNGYLFPKENIKALTHIILQVIT----NGKIS 495 (911)
Q Consensus 429 lPS~~E~qGFplvLLEAMA~G~PVIaTd~gGi~EiV~d---------g~nGlLv~~~D~eaLAeaI~~LLs----d~~~p 495 (911)
+||.+| +||++++|||+||+|+|++++||+.|+|.+ +.||++|++.|+++|+++|.++++ + +
T Consensus 862 mPSr~E--PfGLvqLEAMAyGtPPVVs~vGGL~DtV~d~d~e~i~~eg~NGfLf~~~D~eaLa~AL~rAL~~~~~d---p 936 (977)
T PLN02939 862 IPSMFE--PCGLTQMIAMRYGSVPIVRKTGGLNDSVFDFDDETIPVELRNGFTFLTPDEQGLNSALERAFNYYKRK---P 936 (977)
T ss_pred ECCCcc--CCcHHHHHHHHCCCCEEEecCCCCcceeecCCccccccCCCceEEecCCCHHHHHHHHHHHHHHhccC---H
Confidence 999999 699999999999999999999999999865 579999999999999999998875 7 7
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcC
Q 002535 496 PFARNIASIGRRSVKNLMALETIEGYAMLLENVLKL 531 (911)
Q Consensus 496 ~~~~~mg~~ar~~ae~Fs~e~ia~~y~~Lye~vL~~ 531 (911)
+.+.+|+.++. .++|+|+.++++|.++|++++..
T Consensus 937 e~~~~L~~~am--~~dFSWe~~A~qYeeLY~~ll~~ 970 (977)
T PLN02939 937 EVWKQLVQKDM--NIDFSWDSSASQYEELYQRAVAR 970 (977)
T ss_pred HHHHHHHHHHH--HhcCCHHHHHHHHHHHHHHHHHh
Confidence 88888987653 37799999999999999998753
No 24
>PLN02316 synthase/transferase
Probab=99.98 E-value=4e-30 Score=315.30 Aligned_cols=354 Identities=13% Similarity=0.131 Sum_probs=255.4
Q ss_pred CCCCCEEEEEeCCC----CCChHHHHHHHHHHHHHHCCCeEEEEEeCCCcchhh------------h----------hhc
Q 002535 141 GYRKPQLALVFPDL----LIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEV------------W----------RNI 194 (911)
Q Consensus 141 ~~rkprIalI~~~L----~~GGae~~v~~LAk~L~~~GyeV~V~t~~~g~~~~~------------~----------~~~ 194 (911)
...+++|++|...+ ..||..-++..|+++|+++||+|.|+++..+..... + ..-
T Consensus 584 ~~~pM~Il~VSsE~~P~aKvGGLgDVV~sLp~ALa~~Gh~V~VitP~Y~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 663 (1036)
T PLN02316 584 KEPPMHIVHIAVEMAPIAKVGGLGDVVTSLSRAVQDLNHNVDIILPKYDCLNLSHVKDLHYQRSYSWGGTEIKVWFGKVE 663 (1036)
T ss_pred CCCCcEEEEEEcccCCCCCcCcHHHHHHHHHHHHHHcCCEEEEEecCCcccchhhcccceEEEEeccCCEEEEEEEEEEC
Confidence 34558999998766 369999999999999999999999999876431100 0 001
Q ss_pred CceEEEeccch-------------h----------HHHhhhh--cCccEEEEcCcchhHHHHHHhhC-----CCCCCCEE
Q 002535 195 GVPVAILQTGR-------------E----------KASFVNW--LNYDGILVNSLEAKVVISNIMQE-----PFKSLPLV 244 (911)
Q Consensus 195 gi~v~~l~~~~-------------~----------l~~lI~~--~kpDIIhvhs~~~~~~ia~L~~~-----~~~giPvV 244 (911)
|++++.+.... . ...++.. .+|||||+|.+.. +.++.++.. ...++|+|
T Consensus 664 GV~vyfl~~~~~~F~r~~~Yg~~Dd~~RF~~F~~Aale~l~~~~~~PDIIHaHDW~t-alva~llk~~~~~~~~~~~p~V 742 (1036)
T PLN02316 664 GLSVYFLEPQNGMFWAGCVYGCRNDGERFGFFCHAALEFLLQSGFHPDIIHCHDWSS-APVAWLFKDHYAHYGLSKARVV 742 (1036)
T ss_pred CcEEEEEeccccccCCCCCCCchhHHHHHHHHHHHHHHHHHhcCCCCCEEEECCChH-HHHHHHHHHhhhhhccCCCCEE
Confidence 33443332110 0 0111221 4899999999876 355544432 13568999
Q ss_pred EEEcCchhhHHHHHHHhhcchhhHhhHHHHHhhcceEEecCCcc--ccc-cccCC--CCCEEEeCCCCCCcccccccCc-
Q 002535 245 WTIHEGTLATRARNYASSGQLELLNDWKKVFNRATVVVFPDYVL--PMM-YSAFD--AGNYYVIPGSPAKAWEADTNMD- 318 (911)
Q Consensus 245 ~tiH~~~L~~~l~k~~~~~~d~lIs~~~~~~~~a~~vvfpn~~l--~ii-~~~id--~~ki~VIpg~gVD~~~f~~~~~- 318 (911)
+|+|+....... .+..+..++.++..+..+ .+. ...+. ..++.+|+| |||...|.+...
T Consensus 743 ~TiHnl~~~~n~--------------lk~~l~~AD~ViTVS~tya~EI~~~~~l~~~~~Kl~vI~N-GID~~~w~P~tD~ 807 (1036)
T PLN02316 743 FTIHNLEFGANH--------------IGKAMAYADKATTVSPTYSREVSGNSAIAPHLYKFHGILN-GIDPDIWDPYNDN 807 (1036)
T ss_pred EEeCCcccchhH--------------HHHHHHHCCEEEeCCHHHHHHHHhccCcccccCCEEEEEC-CccccccCCcccc
Confidence 999963221111 112234455554443331 111 11222 478999995 999876554321
Q ss_pred ----------------hhhHHHHHhhCCCC-CCeEEEEEEeccccccccccHHHHHHHHHHhhhhcccCCCCCCCEEEEE
Q 002535 319 ----------------LYNDTVRVKMGFKP-DDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMI 381 (911)
Q Consensus 319 ----------------~~k~~lR~~lgi~~-d~~vIL~VGsrl~~~KGiKg~dlLLeAl~~L~~~~p~~~~~~~~vkLvI 381 (911)
..+..+++++|++. +.+++++|| |+.+. ||+++|++|+..+.+. + ++|+|
T Consensus 808 ~lp~~y~~~~~~~gK~~~k~~Lr~~lGL~~~d~plVg~VG-RL~~q---KGvdlLi~Al~~ll~~--~-------~qlVI 874 (1036)
T PLN02316 808 FIPVPYTSENVVEGKRAAKEALQQRLGLKQADLPLVGIIT-RLTHQ---KGIHLIKHAIWRTLER--N-------GQVVL 874 (1036)
T ss_pred cccccCCchhhhhhhhhhHHHHHHHhCCCcccCeEEEEEe-ccccc---cCHHHHHHHHHHHhhc--C-------cEEEE
Confidence 01456788999984 678999999 55555 9999999999998753 3 89999
Q ss_pred Ee-CCCCCchHHHHHHHHHHcCC--CCccEEEccccccH--HHHHHHcCeeEEcccCCcCCccHHHHHHHHcCCCEEecC
Q 002535 382 LS-GDSTSNYSVVIEAIAHNLHY--PLGVVKHMAAEGDV--DSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPD 456 (911)
Q Consensus 382 VG-G~~~e~Y~~~Le~la~~lgL--~~~~V~flG~v~dV--~~~L~~ADVfVlPS~~E~qGFplvLLEAMA~G~PVIaTd 456 (911)
+| |+. ..+...++++++++++ ++ +|.|.|..++. ..+|+.||+||+||.+| +||++++|||+||+|+|+++
T Consensus 875 vG~Gpd-~~~e~~l~~La~~Lg~~~~~-rV~f~g~~de~lah~iyaaADiflmPS~~E--P~GLvqLEAMa~GtppVvs~ 950 (1036)
T PLN02316 875 LGSAPD-PRIQNDFVNLANQLHSSHHD-RARLCLTYDEPLSHLIYAGADFILVPSIFE--PCGLTQLTAMRYGSIPVVRK 950 (1036)
T ss_pred EeCCCC-HHHHHHHHHHHHHhCccCCC-eEEEEecCCHHHHHHHHHhCcEEEeCCccc--CccHHHHHHHHcCCCeEEEc
Confidence 99 765 3466788999998876 45 79988765443 37999999999999999 69999999999999999999
Q ss_pred CCccccccccC-------------ccEEEEcCCCHHHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHH-HhcCHHHHHHHH
Q 002535 457 LSNIRKYVDDR-------------VNGYLFPKENIKALTHIILQVITNGKIS-PFARNIASIGRRSV-KNLMALETIEGY 521 (911)
Q Consensus 457 ~gGi~EiV~dg-------------~nGlLv~~~D~eaLAeaI~~LLsd~~~p-~~~~~mg~~ar~~a-e~Fs~e~ia~~y 521 (911)
+||++|+|.|+ .||++|++.|+++|+.+|.+++.+ . .....++..+++.+ ++|+|+.++++|
T Consensus 951 vGGL~DtV~d~d~~~~~~~~~g~~~tGflf~~~d~~aLa~AL~raL~~---~~~~~~~~~~~~r~~m~~dFSW~~~A~~Y 1027 (1036)
T PLN02316 951 TGGLFDTVFDVDHDKERAQAQGLEPNGFSFDGADAAGVDYALNRAISA---WYDGRDWFNSLCKRVMEQDWSWNRPALDY 1027 (1036)
T ss_pred CCCcHhhccccccccccccccccCCceEEeCCCCHHHHHHHHHHHHhh---hhhhHHHHHHHHHHHHHhhCCHHHHHHHH
Confidence 99999999874 689999999999999999999986 4 34556788888887 569999999999
Q ss_pred HHHHHHHhc
Q 002535 522 AMLLENVLK 530 (911)
Q Consensus 522 ~~Lye~vL~ 530 (911)
.++|+++.+
T Consensus 1028 ~~LY~~a~~ 1036 (1036)
T PLN02316 1028 MELYHSARK 1036 (1036)
T ss_pred HHHHHHHhC
Confidence 999998753
No 25
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=99.98 E-value=3.6e-30 Score=300.42 Aligned_cols=357 Identities=14% Similarity=0.162 Sum_probs=253.0
Q ss_pred CEEEEEeCCC----CCChHHHHHHHHHHHHHHCCCeEEEEEeCCCcchhhh--------------------------hhc
Q 002535 145 PQLALVFPDL----LIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVW--------------------------RNI 194 (911)
Q Consensus 145 prIalI~~~L----~~GGae~~v~~LAk~L~~~GyeV~V~t~~~g~~~~~~--------------------------~~~ 194 (911)
++|++|.+.. ..||...++..|+++|+++||+|.|+++..+...... ..-
T Consensus 1 m~i~~vs~E~~P~~k~GGl~~~v~~L~~aL~~~G~~v~v~~p~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (473)
T TIGR02095 1 MRVLFVAAEMAPFAKTGGLADVVGALPKALAALGHDVRVLLPAYGCIEDEVDDQVKVVELVDLSVGPRTLYVKVFEGVVE 80 (473)
T ss_pred CeEEEEEeccccccCcCcHHHHHHHHHHHHHHcCCeEEEEecCCcChhhhhccCeEEEEEEEEeecCceeEEEEEEEEEC
Confidence 4688888753 4799999999999999999999999998664422111 011
Q ss_pred CceEEEeccc---------------hhH----------HHhhhh--cCccEEEEcCcchhHHHHHHhhCCCC--CCCEEE
Q 002535 195 GVPVAILQTG---------------REK----------ASFVNW--LNYDGILVNSLEAKVVISNIMQEPFK--SLPLVW 245 (911)
Q Consensus 195 gi~v~~l~~~---------------~~l----------~~lI~~--~kpDIIhvhs~~~~~~ia~L~~~~~~--giPvV~ 245 (911)
|++++.+... ... ..++.. .+|||||+|.+.+. .++.++..... ++|+|+
T Consensus 81 ~v~~~~i~~~~~~~r~~~~y~~~~~d~~~r~~~f~~a~~~~~~~~~~~~DiiH~hdw~~~-~~~~~l~~~~~~~~~~~v~ 159 (473)
T TIGR02095 81 GVPVYFIDNPSLFDRPGGIYGDDYPDNAERFAFFSRAAAELLSGLGWQPDVVHAHDWHTA-LVPALLKAVYRPNPIKTVF 159 (473)
T ss_pred CceEEEEECHHHcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEECCcHHH-HHHHHHHhhccCCCCCEEE
Confidence 3333332110 010 111222 58999999998773 55555543333 489999
Q ss_pred EEcCchhh----H-HHHHH------Hh-hc--chhhHhhHHHHHhhcceEEecCCcc--cccc--c--c------CCCCC
Q 002535 246 TIHEGTLA----T-RARNY------AS-SG--QLELLNDWKKVFNRATVVVFPDYVL--PMMY--S--A------FDAGN 299 (911)
Q Consensus 246 tiH~~~L~----~-~l~k~------~~-~~--~d~lIs~~~~~~~~a~~vvfpn~~l--~ii~--~--~------id~~k 299 (911)
|+|+.... . .+... .. .. ....+...+..+..++.++..+... .+.. . + ....+
T Consensus 160 TiH~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ad~v~tVS~~~~~ei~~~~~~~~l~~~l~~~~~k 239 (473)
T TIGR02095 160 TIHNLAYQGVFPADDFSELGLPPEYFHMEGLEFYGRVNFLKGGIVYADRVTTVSPTYAREILTPEFGYGLDGVLKARSGK 239 (473)
T ss_pred EcCCCccCCcCCHHHHHHcCCChHHcCchhhhcCCchHHHHHHHHhCCcCeecCHhHHHHhcCCcCCccchhHHHhcCCC
Confidence 99973211 0 01100 00 00 0001223345566777666655431 1110 0 1 13468
Q ss_pred EEEeCCCCCCcccccccCc----------------hhhHHHHHhhCCCC--CCeEEEEEEeccccccccccHHHHHHHHH
Q 002535 300 YYVIPGSPAKAWEADTNMD----------------LYNDTVRVKMGFKP--DDLVIAIVGTQFMYRGLWLEHALILRALL 361 (911)
Q Consensus 300 i~VIpg~gVD~~~f~~~~~----------------~~k~~lR~~lgi~~--d~~vIL~VGsrl~~~KGiKg~dlLLeAl~ 361 (911)
+.+|+| |+|...+.+... ..+..+++++|++. +.++++++| ++.+. ||++.+++|+.
T Consensus 240 i~~I~N-Gid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~l~~~~gl~~~~~~~~i~~vG-rl~~~---Kg~~~li~a~~ 314 (473)
T TIGR02095 240 LRGILN-GIDTEVWNPATDPYLKANYSADDLAGKAENKEALQEELGLPVDDDVPLFGVIS-RLTQQ---KGVDLLLAALP 314 (473)
T ss_pred eEEEeC-CCCccccCCCCCcccccCcCccchhhhhhhHHHHHHHcCCCccCCCCEEEEEe-cCccc---cChHHHHHHHH
Confidence 999995 999876654321 11456888999876 778999999 55555 99999999999
Q ss_pred HhhhhcccCCCCCCCEEEEEEe-CCCCCchHHHHHHHHHHcCCCCccEEEccc-c-ccHHHHHHHcCeeEEcccCCcCCc
Q 002535 362 PLFSEVSVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAA-E-GDVDSVLNTADVVIYGSFLEEQTF 438 (911)
Q Consensus 362 ~L~~~~p~~~~~~~~vkLvIVG-G~~~e~Y~~~Le~la~~lgL~~~~V~flG~-v-~dV~~~L~~ADVfVlPS~~E~qGF 438 (911)
.+.++ + ++|+|+| |+ +.+.+.+++++++++ + ++.+.+. . +++..+|+.||++++||.+| +|
T Consensus 315 ~l~~~--~-------~~lvi~G~g~--~~~~~~l~~~~~~~~--~-~v~~~~~~~~~~~~~~~~~aDv~l~pS~~E--~~ 378 (473)
T TIGR02095 315 ELLEL--G-------GQLVVLGTGD--PELEEALRELAERYP--G-NVRVIIGYDEALAHLIYAGADFILMPSRFE--PC 378 (473)
T ss_pred HHHHc--C-------cEEEEECCCC--HHHHHHHHHHHHHCC--C-cEEEEEcCCHHHHHHHHHhCCEEEeCCCcC--Cc
Confidence 98754 2 8999999 64 245678888887654 3 5766654 3 55788999999999999999 79
Q ss_pred cHHHHHHHHcCCCEEecCCCccccccccC------ccEEEEcCCCHHHHHHHHHHHHH----cCCCcHHHHHHHHHHHHH
Q 002535 439 PEILVKALCFRKPIIAPDLSNIRKYVDDR------VNGYLFPKENIKALTHIILQVIT----NGKISPFARNIASIGRRS 508 (911)
Q Consensus 439 plvLLEAMA~G~PVIaTd~gGi~EiV~dg------~nGlLv~~~D~eaLAeaI~~LLs----d~~~p~~~~~mg~~ar~~ 508 (911)
|++++|||+||+|||++++||+.|+|.++ .+|++++++|+++++++|.++++ + ++.+++|++++.+
T Consensus 379 gl~~lEAma~G~pvI~s~~gg~~e~v~~~~~~~~~~~G~l~~~~d~~~la~~i~~~l~~~~~~---~~~~~~~~~~~~~- 454 (473)
T TIGR02095 379 GLTQLYAMRYGTVPIVRRTGGLADTVVDGDPEAESGTGFLFEEYDPGALLAALSRALRLYRQD---PSLWEALQKNAMS- 454 (473)
T ss_pred HHHHHHHHHCCCCeEEccCCCccceEecCCCCCCCCceEEeCCCCHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHhc-
Confidence 99999999999999999999999999988 89999999999999999999988 8 8888899887752
Q ss_pred HHhcCHHHHHHHHHHHHHHH
Q 002535 509 VKNLMALETIEGYAMLLENV 528 (911)
Q Consensus 509 ae~Fs~e~ia~~y~~Lye~v 528 (911)
++|+|++++++|.++|+++
T Consensus 455 -~~fsw~~~a~~~~~~Y~~l 473 (473)
T TIGR02095 455 -QDFSWDKSAKQYVELYRSL 473 (473)
T ss_pred -cCCCcHHHHHHHHHHHHhC
Confidence 6799999999999999863
No 26
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=99.98 E-value=5.3e-30 Score=308.22 Aligned_cols=360 Identities=10% Similarity=0.070 Sum_probs=251.6
Q ss_pred CCCEEEEEeCCCC-----------CChHHHHHHHHHHHH--------HHCCC----eEEEEEeCCCcch-----h---hh
Q 002535 143 RKPQLALVFPDLL-----------IDPQQLQMVTIAIAL--------REIGY----AIQVYSLEDGRAH-----E---VW 191 (911)
Q Consensus 143 rkprIalI~~~L~-----------~GGae~~v~~LAk~L--------~~~Gy----eV~V~t~~~g~~~-----~---~~ 191 (911)
|..+|++|..+.. .||+..++..++++| +++|| +|.|+|....+.. . ..
T Consensus 254 ~~~rIa~lS~Hg~~~~~~~lG~~DtGGq~vYV~elaraL~~~~~~~La~~G~~v~~~V~I~TR~~~~~~~~~~~~~~e~~ 333 (784)
T TIGR02470 254 MVFNVVILSPHGYFGQENVLGLPDTGGQVVYILDQVRALENEMLQRIKLQGLEITPKILIVTRLIPDAEGTTCNQRLEKV 333 (784)
T ss_pred ccceEEEEecccccCCccccCCCCCCCceeHHHHHHHHHHHHHHHHHHhcCCCccceEEEEecCCCCccccccccccccc
Confidence 3478888776652 699999999999975 68999 6779987543211 0 11
Q ss_pred -hhcCceEEEeccch------------------------hHHHhhh-h--cCccEEEEcCcchhHHHHHHhhCCCCCCCE
Q 002535 192 -RNIGVPVAILQTGR------------------------EKASFVN-W--LNYDGILVNSLEAKVVISNIMQEPFKSLPL 243 (911)
Q Consensus 192 -~~~gi~v~~l~~~~------------------------~l~~lI~-~--~kpDIIhvhs~~~~~~ia~L~~~~~~giPv 243 (911)
..-++.+..+++.. .+...+. . .+||+||+|.+.++ ..+.++.+ ..++|.
T Consensus 334 ~~~~~~~I~rvp~g~~~~~~~~~~i~k~~l~p~l~~f~~~~~~~~~~~~~~~pDlIHahy~d~g-lva~lla~-~lgVP~ 411 (784)
T TIGR02470 334 YGTEHAWILRVPFRTENGIILRNWISRFEIWPYLETFAEDAEKEILAELQGKPDLIIGNYSDGN-LVASLLAR-KLGVTQ 411 (784)
T ss_pred cCCCceEEEEecCCCCcccccccccCHHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEECCCchH-HHHHHHHH-hcCCCE
Confidence 11233343333211 0111111 1 36999999998884 66666654 678999
Q ss_pred EEEEcCchh-hHH--------HH-HHHhhcchhhHhhHHHHHhhcceEEecCCc----------------------cccc
Q 002535 244 VWTIHEGTL-ATR--------AR-NYASSGQLELLNDWKKVFNRATVVVFPDYV----------------------LPMM 291 (911)
Q Consensus 244 V~tiH~~~L-~~~--------l~-k~~~~~~d~lIs~~~~~~~~a~~vvfpn~~----------------------l~ii 291 (911)
+.|.|.-.. ++. .+ ++.. ..-+.......+.++.++..+.. +.-+
T Consensus 412 v~t~HsL~~~K~~~~g~~~~~~e~~~~~---~~r~~ae~~~~~~AD~IItsT~qEi~~~~~~v~qY~s~~~ft~p~Ly~v 488 (784)
T TIGR02470 412 CTIAHALEKTKYPDSDIYWQEFEDKYHF---SCQFTADLIAMNAADFIITSTYQEIAGTKDSVGQYESHQAFTMPGLYRV 488 (784)
T ss_pred EEECCcchhhcccccccccccchhHHHh---hhhhhHHHHHHhcCCEEEECcHHHhhhhhhhhhhhhhcccccccceeee
Confidence 999995211 000 00 1100 00011122344555655554421 1112
Q ss_pred cccC--CCCCEEEeCCCCCCcccccccCchh-h---------------HHHHHhhCC--CCCCeEEEEEEeccccccccc
Q 002535 292 YSAF--DAGNYYVIPGSPAKAWEADTNMDLY-N---------------DTVRVKMGF--KPDDLVIAIVGTQFMYRGLWL 351 (911)
Q Consensus 292 ~~~i--d~~ki~VIpg~gVD~~~f~~~~~~~-k---------------~~lR~~lgi--~~d~~vIL~VGsrl~~~KGiK 351 (911)
.+++ +..++.+|| +|+|...|.++.... + ...++.+|+ ++++++|+++| |+.+. |
T Consensus 489 vnGid~~~~Ki~VVp-PGVD~~iF~P~~~~~~r~~~~~~~ie~ll~~~~~~~~~~G~l~d~~kpiIl~VG-RL~~~---K 563 (784)
T TIGR02470 489 VHGIDVFDPKFNIVS-PGADESIYFPYSDKEKRLTNLHPEIEELLFSLEDNDEHYGYLKDPNKPIIFSMA-RLDRV---K 563 (784)
T ss_pred ecCccCCcCCeEEEC-CCcChhhcCCCCchhhhhhhhhcchhhhccchhhHHHHhCCCCCCCCcEEEEEe-CCCcc---C
Confidence 2344 347889998 499998777765432 1 122356665 56788999999 56665 9
Q ss_pred cHHHHHHHHHHhhhhcccCCCCCCCEEEEEEeCCCC-------C--chHHHHHHHHHHcCCCCccEEEcccc---ccHHH
Q 002535 352 EHALILRALLPLFSEVSVENESNSPIKVMILSGDST-------S--NYSVVIEAIAHNLHYPLGVVKHMAAE---GDVDS 419 (911)
Q Consensus 352 g~dlLLeAl~~L~~~~p~~~~~~~~vkLvIVGG~~~-------e--~Y~~~Le~la~~lgL~~~~V~flG~v---~dV~~ 419 (911)
|++.|++|+.++....++ ++|+|+||... + .+...++++++++++.+ +|.|+|+. .++.+
T Consensus 564 Gid~LIeA~~~l~~l~~~-------~~LVIVGGg~~~~~s~d~ee~~~i~~L~~la~~~gL~g-~V~flG~~~~~~~~~e 635 (784)
T TIGR02470 564 NLTGLVECYGRSPKLREL-------VNLVVVAGKLDAKESKDREEQAEIEKMHNLIDQYQLHG-QIRWIGAQLNRVRNGE 635 (784)
T ss_pred CHHHHHHHHHHhHhhCCC-------eEEEEEeCCcccccccchhHHHHHHHHHHHHHHhCCCC-eEEEccCcCCcccHHH
Confidence 999999999887543334 89999994321 1 14457778899999998 99999974 45556
Q ss_pred HHH----HcCeeEEcccCCcCCccHHHHHHHHcCCCEEecCCCccccccccCccEEEEcCCCHHHHHHHHHHHH----Hc
Q 002535 420 VLN----TADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVI----TN 491 (911)
Q Consensus 420 ~L~----~ADVfVlPS~~E~qGFplvLLEAMA~G~PVIaTd~gGi~EiV~dg~nGlLv~~~D~eaLAeaI~~LL----sd 491 (911)
+|. .+|+||+||.+| +||++++||||||+|||+|+.||++|+|.++.+|+++++.|+++++++|.+++ .|
T Consensus 636 lyr~iAd~adVfV~PS~~E--pFGLvvLEAMAcGlPVVAT~~GG~~EiV~dg~tGfLVdp~D~eaLA~aL~~ll~kll~d 713 (784)
T TIGR02470 636 LYRYIADTKGIFVQPALYE--AFGLTVLEAMTCGLPTFATRFGGPLEIIQDGVSGFHIDPYHGEEAAEKIVDFFEKCDED 713 (784)
T ss_pred HHHHhhccCcEEEECCccc--CCCHHHHHHHHcCCCEEEcCCCCHHHHhcCCCcEEEeCCCCHHHHHHHHHHHHHHhcCC
Confidence 664 347999999999 69999999999999999999999999999999999999999999999999886 58
Q ss_pred CCCcHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHH
Q 002535 492 GKISPFARNIASIGRRSV-KNLMALETIEGYAMLL 525 (911)
Q Consensus 492 ~~~p~~~~~mg~~ar~~a-e~Fs~e~ia~~y~~Ly 525 (911)
++.+++|+.+|++.+ ++|+|+.+++++.++.
T Consensus 714 ---p~~~~~ms~~a~~rV~~~FSW~~~A~~ll~l~ 745 (784)
T TIGR02470 714 ---PSYWQKISQGGLQRIYEKYTWKIYSERLLTLA 745 (784)
T ss_pred ---HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 889999999999998 7799999999999876
No 27
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=99.98 E-value=2.2e-30 Score=290.90 Aligned_cols=347 Identities=17% Similarity=0.175 Sum_probs=250.3
Q ss_pred CCCChHHHHHHHHHHHHHHCCCeEEEEEeCCCcchh--hhhhcCceEEEeccc------------------hhHHHhhhh
Q 002535 154 LLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHE--VWRNIGVPVAILQTG------------------REKASFVNW 213 (911)
Q Consensus 154 L~~GGae~~v~~LAk~L~~~GyeV~V~t~~~g~~~~--~~~~~gi~v~~l~~~------------------~~l~~lI~~ 213 (911)
...||+++++.++++.|.++||+|.|++....+... .....++.+..++.. ..+...+..
T Consensus 18 ~~~GG~~~~~~~l~~~L~~~g~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (398)
T cd03800 18 ADTGGQNVYVLELARALARLGHEVDIFTRRIDDALPPIVELAPGVRVVRVPAGPAEYLPKEELWPYLDEFADDLLRFLRR 97 (398)
T ss_pred CCCCceeehHHHHHHHHhccCceEEEEEecCCcccCCccccccceEEEecccccccCCChhhcchhHHHHHHHHHHHHHh
Confidence 457999999999999999999999999865432111 111223333333211 112223444
Q ss_pred c--CccEEEEcCcchhHHHHHHhhCCCCCCCEEEEEcCchhhHH--HHHHHhhcchhhHhhHHHHHhhcceEEecCCcc-
Q 002535 214 L--NYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATR--ARNYASSGQLELLNDWKKVFNRATVVVFPDYVL- 288 (911)
Q Consensus 214 ~--kpDIIhvhs~~~~~~ia~L~~~~~~giPvV~tiH~~~L~~~--l~k~~~~~~d~lIs~~~~~~~~a~~vvfpn~~l- 288 (911)
. +||+||+|..... .....+. +..++|+|++.|+...... ...................++.++.+++++...
T Consensus 98 ~~~~~Div~~~~~~~~-~~~~~~~-~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~ 175 (398)
T cd03800 98 EGGRPDLIHAHYWDSG-LVALLLA-RRLGIPLVHTFHSLGAVKRRHLGAADTYEPARRIEAEERLLRAADRVIASTPQEA 175 (398)
T ss_pred cCCCccEEEEecCccc-hHHHHHH-hhcCCceEEEeecccccCCcccccccccchhhhhhHHHHHHhhCCEEEEcCHHHH
Confidence 4 9999999987663 4444443 3568999999997321100 000000000111122345566778777776542
Q ss_pred -ccc-cccCCCCCEEEeCCCCCCcccccccCchhhHHHHHhhCCCCCCeEEEEEEeccccccccccHHHHHHHHHHhhhh
Q 002535 289 -PMM-YSAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSE 366 (911)
Q Consensus 289 -~ii-~~~id~~ki~VIpg~gVD~~~f~~~~~~~k~~lR~~lgi~~d~~vIL~VGsrl~~~KGiKg~dlLLeAl~~L~~~ 366 (911)
... .......++.+||+ |+|...+.+... ....++.++.++++++++++| ++.+. ||++.+++|+..+.++
T Consensus 176 ~~~~~~~~~~~~~~~vi~n-g~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~~~g-r~~~~---k~~~~ll~a~~~l~~~ 248 (398)
T cd03800 176 EELYSLYGAYPRRIRVVPP-GVDLERFTPYGR--AEARRARLLRDPDKPRILAVG-RLDPR---KGIDTLIRAYAELPEL 248 (398)
T ss_pred HHHHHHccccccccEEECC-CCCccceecccc--hhhHHHhhccCCCCcEEEEEc-ccccc---cCHHHHHHHHHHHHHh
Confidence 111 11223456889984 888754433221 122255566777888999999 55554 9999999999999887
Q ss_pred cccCCCCCCCEEEEEEe-CCCC--CchHHHHHHHHHHcCCCCccEEEcccc--ccHHHHHHHcCeeEEcccCCcCCccHH
Q 002535 367 VSVENESNSPIKVMILS-GDST--SNYSVVIEAIAHNLHYPLGVVKHMAAE--GDVDSVLNTADVVIYGSFLEEQTFPEI 441 (911)
Q Consensus 367 ~p~~~~~~~~vkLvIVG-G~~~--e~Y~~~Le~la~~lgL~~~~V~flG~v--~dV~~~L~~ADVfVlPS~~E~qGFplv 441 (911)
.++ ++++++| |... ..+...++++++++++.+ +|.++|++ +++.++|+.||++++||..| |+|++
T Consensus 249 ~~~-------~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~g~~~~~~~~~~~~~adi~l~ps~~e--~~~~~ 318 (398)
T cd03800 249 RER-------ANLVIVGGPRDDILAMDEEELRELARELGVID-RVDFPGRVSREDLPALYRAADVFVNPALYE--PFGLT 318 (398)
T ss_pred CCC-------eEEEEEECCCCcchhhhhHHHHHHHHhcCCCc-eEEEeccCCHHHHHHHHHhCCEEEeccccc--ccCcH
Confidence 776 9999999 4332 223456778888899888 89999986 68999999999999999988 79999
Q ss_pred HHHHHHcCCCEEecCCCccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH-HhcCHHHHHHH
Q 002535 442 LVKALCFRKPIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSV-KNLMALETIEG 520 (911)
Q Consensus 442 LLEAMA~G~PVIaTd~gGi~EiV~dg~nGlLv~~~D~eaLAeaI~~LLsd~~~p~~~~~mg~~ar~~a-e~Fs~e~ia~~ 520 (911)
++|||++|+|||+++.+|..|++.++.+|++++++|+++++++|.+++++ ++.+.+|++++++.+ ++|+|+.++++
T Consensus 319 l~Ea~a~G~Pvi~s~~~~~~e~i~~~~~g~~~~~~~~~~l~~~i~~l~~~---~~~~~~~~~~a~~~~~~~~s~~~~~~~ 395 (398)
T cd03800 319 ALEAMACGLPVVATAVGGPRDIVVDGVTGLLVDPRDPEALAAALRRLLTD---PALRRRLSRAGLRRARARYTWERVAAR 395 (398)
T ss_pred HHHHHhcCCCEEECCCCCHHHHccCCCCeEEeCCCCHHHHHHHHHHHHhC---HHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999 999999999999999 77999999998
Q ss_pred HH
Q 002535 521 YA 522 (911)
Q Consensus 521 y~ 522 (911)
|.
T Consensus 396 ~~ 397 (398)
T cd03800 396 LL 397 (398)
T ss_pred Hh
Confidence 75
No 28
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=99.98 E-value=2.4e-30 Score=294.54 Aligned_cols=347 Identities=15% Similarity=0.131 Sum_probs=237.6
Q ss_pred EEEEEeCCCCCChHHHHHHHHHHHHHHCCCeEEEEEeCCCcchhhhhhcCceEEEeccch-----------h--------
Q 002535 146 QLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGR-----------E-------- 206 (911)
Q Consensus 146 rIalI~~~L~~GGae~~v~~LAk~L~~~GyeV~V~t~~~g~~~~~~~~~gi~v~~l~~~~-----------~-------- 206 (911)
||++|++++-. +...++++|.++||+|.+++..+...... |+++..+.... .
T Consensus 1 ~il~~~~~~p~-----~~~~la~~L~~~G~~v~~~~~~~~~~~~~----~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (396)
T cd03818 1 RILFVHQNFPG-----QFRHLAPALAAQGHEVVFLTEPNAAPPPG----GVRVVRYRPPRGPTSGTHPYLREFEEAVLRG 71 (396)
T ss_pred CEEEECCCCch-----hHHHHHHHHHHCCCEEEEEecCCCCCCCC----CeeEEEecCCCCCCCCCCccchhHHHHHHHH
Confidence 47788887652 35679999999999999999877543221 45544443210 0
Q ss_pred --H----HHh-hhhcCccEEEEcCcchhHHHHHHhhCCCCCCCEEEEEc------Cchh-hH-HH-HHH-HhhcchhhHh
Q 002535 207 --K----ASF-VNWLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIH------EGTL-AT-RA-RNY-ASSGQLELLN 269 (911)
Q Consensus 207 --l----~~l-I~~~kpDIIhvhs~~~~~~ia~L~~~~~~giPvV~tiH------~~~L-~~-~l-~k~-~~~~~d~lIs 269 (911)
. ..+ .+..+||+||+|+....+. ++...+.++|+|.+.| +... +. .. ... ..........
T Consensus 72 ~~~~~~~~~~~~~~~~pdvi~~h~~~~~~~---~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (396)
T cd03818 72 QAVARALLALRAKGFRPDVIVAHPGWGETL---FLKDVWPDAPLIGYFEFYYRAEGADVGFDPEFPPSLDDALRLRNRNA 148 (396)
T ss_pred HHHHHHHHHHHhcCCCCCEEEECCccchhh---hHHHhCCCCCEEEEEeeeecCCCCCCCCCCCCCCchhHHHHHHHhhh
Confidence 0 111 1235799999998766322 2223356788886554 3111 00 00 000 0000000011
Q ss_pred hHHHHHhhcceEEecCCccccccccCCCCCEEEeCCCCCCcccccccCchhhHHHHHhhCCCCCCeEEEEEEeccccccc
Q 002535 270 DWKKVFNRATVVVFPDYVLPMMYSAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGL 349 (911)
Q Consensus 270 ~~~~~~~~a~~vvfpn~~l~ii~~~id~~ki~VIpg~gVD~~~f~~~~~~~k~~lR~~lgi~~d~~vIL~VGsrl~~~KG 349 (911)
.....+..++.++.++............+++.+||+ |+|...|.+.... ....+....+.+++++++++|+.+.+.
T Consensus 149 ~~~~~~~~ad~vi~~s~~~~~~~~~~~~~ki~vI~n-gvd~~~f~~~~~~-~~~~~~~~~~~~~~~~i~~vgR~l~~~-- 224 (396)
T cd03818 149 LILLALAQADAGVSPTRWQRSTFPAELRSRISVIHD-GIDTDRLRPDPQA-RLRLPNGRVLTPGDEVITFVARNLEPY-- 224 (396)
T ss_pred HhHHHHHhCCEEECCCHHHHhhCcHhhccceEEeCC-CccccccCCCchh-hhcccccccCCCCCeEEEEECCCcccc--
Confidence 134456778887777655322222222368999995 9998655443221 112222333556778999999546665
Q ss_pred cccHHHHHHHHHHhhhhcccCCCCCCCEEEEEEeCCCC------CchHHHHHHHHHHcCC---CCccEEEcccc--ccHH
Q 002535 350 WLEHALILRALLPLFSEVSVENESNSPIKVMILSGDST------SNYSVVIEAIAHNLHY---PLGVVKHMAAE--GDVD 418 (911)
Q Consensus 350 iKg~dlLLeAl~~L~~~~p~~~~~~~~vkLvIVGG~~~------e~Y~~~Le~la~~lgL---~~~~V~flG~v--~dV~ 418 (911)
||++.+++|+..+.++.|+ ++++|+|+... +.-....+++.++++. .+ +|+|+|++ +++.
T Consensus 225 -Kg~~~ll~a~~~l~~~~~~-------~~lvivG~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~V~f~G~v~~~~~~ 295 (396)
T cd03818 225 -RGFHVFMRALPRLLRARPD-------ARVVIVGGDGVSYGAPPPDGESWKQHMLDELGGRLDLS-RVHFLGRVPYDQYL 295 (396)
T ss_pred -cCHHHHHHHHHHHHHHCCC-------cEEEEEcCCCcccCCCCCCcccHHHHHHHHhhcccCcc-eEEEeCCCCHHHHH
Confidence 9999999999999888877 99999994210 0000122333443332 34 79999987 7899
Q ss_pred HHHHHcCeeEEcccCCcCCccHHHHHHHHcCCCEEecCCCccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHH
Q 002535 419 SVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFA 498 (911)
Q Consensus 419 ~~L~~ADVfVlPS~~E~qGFplvLLEAMA~G~PVIaTd~gGi~EiV~dg~nGlLv~~~D~eaLAeaI~~LLsd~~~p~~~ 498 (911)
.+|+.||++++||..| |+|++++||||||+|||+|+.+|++|++.++.+|++++++|+++++++|.++++| ++.+
T Consensus 296 ~~l~~adv~v~~s~~e--~~~~~llEAmA~G~PVIas~~~g~~e~i~~~~~G~lv~~~d~~~la~~i~~ll~~---~~~~ 370 (396)
T cd03818 296 ALLQVSDVHVYLTYPF--VLSWSLLEAMACGCLVVGSDTAPVREVITDGENGLLVDFFDPDALAAAVIELLDD---PARR 370 (396)
T ss_pred HHHHhCcEEEEcCccc--ccchHHHHHHHCCCCEEEcCCCCchhhcccCCceEEcCCCCHHHHHHHHHHHHhC---HHHH
Confidence 9999999999999988 7999999999999999999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHHHh-cCHHHHHHHHH
Q 002535 499 RNIASIGRRSVKN-LMALETIEGYA 522 (911)
Q Consensus 499 ~~mg~~ar~~ae~-Fs~e~ia~~y~ 522 (911)
.+|+++|++.+++ |+|+.++++|.
T Consensus 371 ~~l~~~ar~~~~~~fs~~~~~~~~~ 395 (396)
T cd03818 371 ARLRRAARRTALRYDLLSVCLPRQL 395 (396)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHh
Confidence 9999999999955 99999999885
No 29
>PRK14099 glycogen synthase; Provisional
Probab=99.97 E-value=6.3e-30 Score=299.30 Aligned_cols=362 Identities=14% Similarity=0.134 Sum_probs=256.1
Q ss_pred CCCEEEEEeCCC----CCChHHHHHHHHHHHHHHCCCeEEEEEeCCCcchhhh---------h-h------------cCc
Q 002535 143 RKPQLALVFPDL----LIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVW---------R-N------------IGV 196 (911)
Q Consensus 143 rkprIalI~~~L----~~GGae~~v~~LAk~L~~~GyeV~V~t~~~g~~~~~~---------~-~------------~gi 196 (911)
.+++|++|.... ..||..-++..|.++|+++||+|.|+.+..+...... . . .|+
T Consensus 2 ~~~~il~v~~E~~p~~k~ggl~dv~~~lp~~l~~~g~~v~v~~P~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 81 (485)
T PRK14099 2 TPLRVLSVASEIFPLIKTGGLADVAGALPAALKAHGVEVRTLVPGYPAVLAGIEDAEQVHSFPDLFGGPARLLAARAGGL 81 (485)
T ss_pred CCcEEEEEEeccccccCCCcHHHHHHHHHHHHHHCCCcEEEEeCCCcchhhhhcCceEEEEEeeeCCceEEEEEEEeCCc
Confidence 468899988766 4799999999999999999999999988553321000 0 0 123
Q ss_pred eEEEecc----------c---------hhHHHh----------h----hhcCccEEEEcCcchhHHHHHHhhC-CCCCCC
Q 002535 197 PVAILQT----------G---------REKASF----------V----NWLNYDGILVNSLEAKVVISNIMQE-PFKSLP 242 (911)
Q Consensus 197 ~v~~l~~----------~---------~~l~~l----------I----~~~kpDIIhvhs~~~~~~ia~L~~~-~~~giP 242 (911)
+++.+.. + ....++ + ...+|||||+|.+.+. .+..++.. ...++|
T Consensus 82 ~~~~~~~~~~f~r~~~~y~~~~~~~~~d~~~rf~~f~~a~~~~~~~~~~~~~pDIiH~Hdw~~~-l~~~~l~~~~~~~~~ 160 (485)
T PRK14099 82 DLFVLDAPHLYDRPGNPYVGPDGKDWPDNAQRFAALARAAAAIGQGLVPGFVPDIVHAHDWQAG-LAPAYLHYSGRPAPG 160 (485)
T ss_pred eEEEEeChHhhCCCCCCCCCccCCCCCcHHHHHHHHHHHHHHHHhhhccCCCCCEEEECCcHHH-HHHHHHHhCCCCCCC
Confidence 3222210 0 010011 1 1358999999998773 55554432 234689
Q ss_pred EEEEEcCchhhH----HH-HH------HHh-hc--chhhHhhHHHHHhhcceEEecCCccc--cc--cc--c------CC
Q 002535 243 LVWTIHEGTLAT----RA-RN------YAS-SG--QLELLNDWKKVFNRATVVVFPDYVLP--MM--YS--A------FD 296 (911)
Q Consensus 243 vV~tiH~~~L~~----~l-~k------~~~-~~--~d~lIs~~~~~~~~a~~vvfpn~~l~--ii--~~--~------id 296 (911)
+|+|+|+..... .. .. ... .. ....+...+..+..++.++..+.... +. +. + ..
T Consensus 161 ~V~TiHn~~~qg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~i~~ad~vitVS~~~a~ei~~~~~g~gl~~~l~~~ 240 (485)
T PRK14099 161 TVFTIHNLAFQGQFPRELLGALGLPPSAFSLDGVEYYGGIGYLKAGLQLADRITTVSPTYALEIQGPEAGMGLDGLLRQR 240 (485)
T ss_pred EEEeCCCCCCCCcCCHHHHHHcCCChHHcCchhhhhCCCccHHHHHHHhcCeeeecChhHHHHHhcccCCcChHHHHHhh
Confidence 999999832210 00 00 000 00 00011224555677787766655421 11 11 1 13
Q ss_pred CCCEEEeCCCCCCcccccccCch----------------hhHHHHHhhCCCC--CCeEEEEEEeccccccccccHHHHHH
Q 002535 297 AGNYYVIPGSPAKAWEADTNMDL----------------YNDTVRVKMGFKP--DDLVIAIVGTQFMYRGLWLEHALILR 358 (911)
Q Consensus 297 ~~ki~VIpg~gVD~~~f~~~~~~----------------~k~~lR~~lgi~~--d~~vIL~VGsrl~~~KGiKg~dlLLe 358 (911)
..++.+|+| |+|...|.+.... .+..+++++|++. +.++++++| ++.+. ||++.+++
T Consensus 241 ~~ki~vI~N-GID~~~f~p~~~~~~~~~~~~~~~~~k~~~k~~l~~~~gl~~~~~~~li~~Vg-RL~~~---KG~d~Li~ 315 (485)
T PRK14099 241 ADRLSGILN-GIDTAVWNPATDELIAATYDVETLAARAANKAALQARFGLDPDPDALLLGVIS-RLSWQ---KGLDLLLE 315 (485)
T ss_pred CCCeEEEec-CCchhhccccccchhhhcCChhHHHhHHHhHHHHHHHcCCCcccCCcEEEEEe-cCCcc---ccHHHHHH
Confidence 578999995 9998766554321 1456788899874 467888999 55555 99999999
Q ss_pred HHHHhhhhcccCCCCCCCEEEEEEe-CCCCCchHHHHHHHHHHcCCCCccEEEccccccHHHHH-HHcCeeEEcccCCcC
Q 002535 359 ALLPLFSEVSVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVL-NTADVVIYGSFLEEQ 436 (911)
Q Consensus 359 Al~~L~~~~p~~~~~~~~vkLvIVG-G~~~e~Y~~~Le~la~~lgL~~~~V~flG~v~dV~~~L-~~ADVfVlPS~~E~q 436 (911)
|+..+.++ + ++|+|+| |+. .+.+.+++++++++ .+ .+.++|+.+++..+| +.||++|+||.+|
T Consensus 316 A~~~l~~~--~-------~~lvivG~G~~--~~~~~l~~l~~~~~-~~-v~~~~G~~~~l~~~~~a~aDifv~PS~~E-- 380 (485)
T PRK14099 316 ALPTLLGE--G-------AQLALLGSGDA--ELEARFRAAAQAYP-GQ-IGVVIGYDEALAHLIQAGADALLVPSRFE-- 380 (485)
T ss_pred HHHHHHhc--C-------cEEEEEecCCH--HHHHHHHHHHHHCC-CC-EEEEeCCCHHHHHHHHhcCCEEEECCccC--
Confidence 99988753 3 8999999 752 35577888888654 22 347999988999987 5699999999998
Q ss_pred CccHHHHHHHHcCCCEEecCCCccccccccC---------ccEEEEcCCCHHHHHHHHHH---HHHcCCCcHHHHHHHHH
Q 002535 437 TFPEILVKALCFRKPIIAPDLSNIRKYVDDR---------VNGYLFPKENIKALTHIILQ---VITNGKISPFARNIASI 504 (911)
Q Consensus 437 GFplvLLEAMA~G~PVIaTd~gGi~EiV~dg---------~nGlLv~~~D~eaLAeaI~~---LLsd~~~p~~~~~mg~~ 504 (911)
|||++++|||+||+|+|++++||++|+|.++ .+|++++++|+++|+++|.+ +++| ++.+++|+.+
T Consensus 381 ~fGl~~lEAma~G~ppVvs~~GGl~d~V~~~~~~~~~~~~~~G~l~~~~d~~~La~ai~~a~~l~~d---~~~~~~l~~~ 457 (485)
T PRK14099 381 PCGLTQLCALRYGAVPVVARVGGLADTVVDANEMAIATGVATGVQFSPVTADALAAALRKTAALFAD---PVAWRRLQRN 457 (485)
T ss_pred CCcHHHHHHHHCCCCcEEeCCCCccceeecccccccccCCCceEEeCCCCHHHHHHHHHHHHHHhcC---HHHHHHHHHH
Confidence 7999999999999988889999999999775 68999999999999999997 6778 8889999998
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhc
Q 002535 505 GRRSVKNLMALETIEGYAMLLENVLK 530 (911)
Q Consensus 505 ar~~ae~Fs~e~ia~~y~~Lye~vL~ 530 (911)
++ .++|||++++++|.++|+++++
T Consensus 458 ~~--~~~fSw~~~a~~y~~lY~~l~~ 481 (485)
T PRK14099 458 GM--TTDVSWRNPAQHYAALYRSLVA 481 (485)
T ss_pred hh--hhcCChHHHHHHHHHHHHHHHh
Confidence 86 4779999999999999999875
No 30
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=99.97 E-value=3.9e-30 Score=286.62 Aligned_cols=338 Identities=17% Similarity=0.169 Sum_probs=242.2
Q ss_pred EEEEeCCCCCChHHHHHHHHHHHHHHCCCeEEEEEeCCCcc-hhhhhhcCceEEE--------------eccchhHHHhh
Q 002535 147 LALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRA-HEVWRNIGVPVAI--------------LQTGREKASFV 211 (911)
Q Consensus 147 IalI~~~L~~GGae~~v~~LAk~L~~~GyeV~V~t~~~g~~-~~~~~~~gi~v~~--------------l~~~~~l~~lI 211 (911)
|+++.+... ++.+.++.++++.|. ||++.+++...... .......++.... ......+..++
T Consensus 2 ~~~~~~~~~-~~~e~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (367)
T cd05844 2 VLIFRPLLL-APSETFVRNQAEALR--RFRPVYVGGRRLGPAPLGALAVRLADLAGGKAGLRLGALRLLTGSAPQLRRLL 78 (367)
T ss_pred EEEEeCCCC-CCchHHHHHHHHhcc--cCCcEEEEeeccCCCCCcccceeeeecccchhHHHHHHHHhccccccHHHHHH
Confidence 445555544 448999999999995 77888887654321 2112222222110 11112233346
Q ss_pred hhcCccEEEEcCcchhHHHHHHhhCCCCCCCEEEEEcCchhhHHHHHHHhhcchhhHhhHHHHHhhcceEEecCCccc--
Q 002535 212 NWLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRATVVVFPDYVLP-- 289 (911)
Q Consensus 212 ~~~kpDIIhvhs~~~~~~ia~L~~~~~~giPvV~tiH~~~L~~~l~k~~~~~~d~lIs~~~~~~~~a~~vvfpn~~l~-- 289 (911)
+..+||+||+|..... .....+. +..++|+|++.|+.........................++.++.+++.+....
T Consensus 79 ~~~~~dvvh~~~~~~~-~~~~~~~-~~~~~p~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~ 156 (367)
T cd05844 79 RRHRPDLVHAHFGFDG-VYALPLA-RRLGVPLVVTFHGFDATTSLALLLRSRWALYARRRRRLARRAALFIAVSQFIRDR 156 (367)
T ss_pred HhhCCCEEEeccCchH-HHHHHHH-HHcCCCEEEEEeCccccccchhhcccchhHHHHHHHHHHHhcCEEEECCHHHHHH
Confidence 7789999999976653 3333332 35689999999973221110000000011111123444566777777665522
Q ss_pred cccccCCCCCEEEeCCCCCCcccccccCchhhHHHHHhhCCCCCCeEEEEEEeccccccccccHHHHHHHHHHhhhhccc
Q 002535 290 MMYSAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSV 369 (911)
Q Consensus 290 ii~~~id~~ki~VIpg~gVD~~~f~~~~~~~k~~lR~~lgi~~d~~vIL~VGsrl~~~KGiKg~dlLLeAl~~L~~~~p~ 369 (911)
....+++..++.++|+ |+|...+.+.. ...++++++++|+.. +. ||++.+++|+..+.+++++
T Consensus 157 ~~~~~~~~~~i~vi~~-g~d~~~~~~~~------------~~~~~~~i~~~G~~~-~~---K~~~~li~a~~~l~~~~~~ 219 (367)
T cd05844 157 LLALGFPPEKVHVHPI-GVDTAKFTPAT------------PARRPPRILFVGRFV-EK---KGPLLLLEAFARLARRVPE 219 (367)
T ss_pred HHHcCCCHHHeEEecC-CCCHHhcCCCC------------CCCCCcEEEEEEeec-cc---cChHHHHHHHHHHHHhCCC
Confidence 2222455678889984 88874433211 123456899999554 44 9999999999999888777
Q ss_pred CCCCCCCEEEEEEe-CCCCCchHHHHHHHHHHcCCCCccEEEcccc--ccHHHHHHHcCeeEEcccC------CcCCccH
Q 002535 370 ENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAAE--GDVDSVLNTADVVIYGSFL------EEQTFPE 440 (911)
Q Consensus 370 ~~~~~~~vkLvIVG-G~~~e~Y~~~Le~la~~lgL~~~~V~flG~v--~dV~~~L~~ADVfVlPS~~------E~qGFpl 440 (911)
++|+|+| |+.. +.++++++++++.+ +|+|+|++ +++..+|+.||++|+||.. | |||+
T Consensus 220 -------~~l~ivG~g~~~----~~~~~~~~~~~~~~-~v~~~g~~~~~~l~~~~~~ad~~v~ps~~~~~~~~E--~~~~ 285 (367)
T cd05844 220 -------VRLVIIGDGPLL----AALEALARALGLGG-RVTFLGAQPHAEVRELMRRARIFLQPSVTAPSGDAE--GLPV 285 (367)
T ss_pred -------eEEEEEeCchHH----HHHHHHHHHcCCCC-eEEECCCCCHHHHHHHHHhCCEEEECcccCCCCCcc--CCch
Confidence 9999999 6544 77889999988887 89999987 7899999999999999964 5 7999
Q ss_pred HHHHHHHcCCCEEecCCCccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH-HhcCHHHHHH
Q 002535 441 ILVKALCFRKPIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSV-KNLMALETIE 519 (911)
Q Consensus 441 vLLEAMA~G~PVIaTd~gGi~EiV~dg~nGlLv~~~D~eaLAeaI~~LLsd~~~p~~~~~mg~~ar~~a-e~Fs~e~ia~ 519 (911)
+++|||+||+|||+++.++..|++.++.+|++++++|+++++++|.++++| ++.+.+|+.++++.+ ++|+|+.+++
T Consensus 286 ~~~EA~a~G~PvI~s~~~~~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~~---~~~~~~~~~~a~~~~~~~~s~~~~~~ 362 (367)
T cd05844 286 VLLEAQASGVPVVATRHGGIPEAVEDGETGLLVPEGDVAALAAALGRLLAD---PDLRARMGAAGRRRVEERFDLRRQTA 362 (367)
T ss_pred HHHHHHHcCCCEEEeCCCCchhheecCCeeEEECCCCHHHHHHHHHHHHcC---HHHHHHHHHHHHHHHHHHCCHHHHHH
Confidence 999999999999999999999999999999999999999999999999999 999999999999999 6799999999
Q ss_pred HHHH
Q 002535 520 GYAM 523 (911)
Q Consensus 520 ~y~~ 523 (911)
++.+
T Consensus 363 ~l~~ 366 (367)
T cd05844 363 KLEA 366 (367)
T ss_pred HHhc
Confidence 8865
No 31
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=99.97 E-value=6.7e-30 Score=282.90 Aligned_cols=334 Identities=18% Similarity=0.200 Sum_probs=240.5
Q ss_pred CEEEEEeCCCCCChHHHHHHHHHHHHHHCCCeEEEEEeCCCcchhhhhhcCceEEEeccchhHHHhhhhcCccEEEEcCc
Q 002535 145 PQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVNSL 224 (911)
Q Consensus 145 prIalI~~~L~~GGae~~v~~LAk~L~~~GyeV~V~t~~~g~~~~~~~~~gi~v~~l~~~~~l~~lI~~~kpDIIhvhs~ 224 (911)
++|+++......||+++++..+++.|.++||+|++++.... .+...++..++|+||+|..
T Consensus 1 MkIl~~~~~~~~gG~~~~~~~l~~~l~~~G~~v~v~~~~~~--------------------~~~~~~~~~~~diih~~~~ 60 (365)
T cd03825 1 MKVLHLNTSDISGGAARAAYRLHRALQAAGVDSTMLVQEKK--------------------ALISKIEIINADIVHLHWI 60 (365)
T ss_pred CeEEEEecCCCCCcHHHHHHHHHHHHHhcCCceeEEEeecc--------------------hhhhChhcccCCEEEEEcc
Confidence 47899998888899999999999999999999999997543 2334566789999999885
Q ss_pred chhHHHHHHhhCCCCCCCEEEEEcCchhh-----H--HHHHHH---------hh-----cchhhHhhHHHHH-hhcceEE
Q 002535 225 EAKVVISNIMQEPFKSLPLVWTIHEGTLA-----T--RARNYA---------SS-----GQLELLNDWKKVF-NRATVVV 282 (911)
Q Consensus 225 ~~~~~ia~L~~~~~~giPvV~tiH~~~L~-----~--~l~k~~---------~~-----~~d~lIs~~~~~~-~~a~~vv 282 (911)
.........+.+...++|+|+++|+.... . ....+. .. ............+ ..+..++
T Consensus 61 ~~~~~~~~~~~~~~~~~~~v~~~hd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 140 (365)
T cd03825 61 HGGFLSIEDLSKLLDRKPVVWTLHDMWPFTGGCHYPGGCDRYKTECGNCPQLGSYPEKDLSRWIWRRKRKAWADLNLTIV 140 (365)
T ss_pred ccCccCHHHHHHHHcCCCEEEEcccCcccccccCCccccccccccCCCCCCCCCCCcccHHHHHHHHHHHHhccCCcEEE
Confidence 54222111221111478999999973111 0 000000 00 0000000111111 1223344
Q ss_pred ecCCcccc-c--cccCCCCCEEEeCCCCCCcccccccCchhhHHHHHhhCCCCCCeEEEEEEeccccccccccHHHHHHH
Q 002535 283 FPDYVLPM-M--YSAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRA 359 (911)
Q Consensus 283 fpn~~l~i-i--~~~id~~ki~VIpg~gVD~~~f~~~~~~~k~~lR~~lgi~~d~~vIL~VGsrl~~~KGiKg~dlLLeA 359 (911)
.++..... . ...++..++.++|+ |+|...+. +..+...++.+++++++.+++++| +.... ..||++.+++|
T Consensus 141 ~~s~~~~~~~~~~~~~~~~~~~vi~n-gi~~~~~~---~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~-~~K~~~~ll~a 214 (365)
T cd03825 141 APSRWLADCARSSSLFKGIPIEVIPN-GIDTTIFR---PRDKREARKRLGLPADKKIILFGA-VGGTD-PRKGFDELIEA 214 (365)
T ss_pred ehhHHHHHHHHhccccCCCceEEeCC-CCcccccC---CCcHHHHHHHhCCCCCCeEEEEEe-cCCCc-cccCHHHHHHH
Confidence 44433111 1 11245678999995 88884443 233455677788888877776666 43320 12999999999
Q ss_pred HHHhhhh-cccCCCCCCCEEEEEEe-CCCCCchHHHHHHHHHHcCCCCccEEEccccc---cHHHHHHHcCeeEEcccCC
Q 002535 360 LLPLFSE-VSVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEG---DVDSVLNTADVVIYGSFLE 434 (911)
Q Consensus 360 l~~L~~~-~p~~~~~~~~vkLvIVG-G~~~e~Y~~~Le~la~~lgL~~~~V~flG~v~---dV~~~L~~ADVfVlPS~~E 434 (911)
+..+.++ .++ ++++++| ++.. .. .++.. +|.++|+.. ++..+|+.||++++||..|
T Consensus 215 ~~~l~~~~~~~-------~~~~i~G~~~~~----~~-------~~~~~-~v~~~g~~~~~~~~~~~~~~ad~~l~ps~~e 275 (365)
T cd03825 215 LKRLAERWKDD-------IELVVFGASDPE----IP-------PDLPF-PVHYLGSLNDDESLALIYSAADVFVVPSLQE 275 (365)
T ss_pred HHHhhhccCCC-------eEEEEeCCCchh----hh-------ccCCC-ceEecCCcCCHHHHHHHHHhCCEEEeccccc
Confidence 9998775 455 9999999 5432 11 14555 799999874 6889999999999999988
Q ss_pred cCCccHHHHHHHHcCCCEEecCCCccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH-HhcC
Q 002535 435 EQTFPEILVKALCFRKPIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSV-KNLM 513 (911)
Q Consensus 435 ~qGFplvLLEAMA~G~PVIaTd~gGi~EiV~dg~nGlLv~~~D~eaLAeaI~~LLsd~~~p~~~~~mg~~ar~~a-e~Fs 513 (911)
|||++++|||+||+|||+++.++..|++.++.+|++++..|+++++++|.+++++ ++.+.+|++++++.+ ++|+
T Consensus 276 --~~g~~~~Eam~~g~PvI~~~~~~~~e~~~~~~~g~~~~~~~~~~~~~~l~~l~~~---~~~~~~~~~~~~~~~~~~~s 350 (365)
T cd03825 276 --NFPNTAIEALACGTPVVAFDVGGIPDIVDHGVTGYLAKPGDPEDLAEGIEWLLAD---PDEREELGEAARELAENEFD 350 (365)
T ss_pred --cccHHHHHHHhcCCCEEEecCCCChhheeCCCceEEeCCCCHHHHHHHHHHHHhC---HHHHHHHHHHHHHHHHHhcC
Confidence 7999999999999999999999999999999899999999999999999999999 888999999999999 6699
Q ss_pred HHHHHHHHHHHHHHH
Q 002535 514 ALETIEGYAMLLENV 528 (911)
Q Consensus 514 ~e~ia~~y~~Lye~v 528 (911)
++.++++|.++|+++
T Consensus 351 ~~~~~~~~~~~y~~~ 365 (365)
T cd03825 351 SRVQAKRYLSLYEEL 365 (365)
T ss_pred HHHHHHHHHHHHhhC
Confidence 999999999999863
No 32
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=99.97 E-value=1.8e-29 Score=273.91 Aligned_cols=339 Identities=17% Similarity=0.212 Sum_probs=242.6
Q ss_pred EEEEEeCCCCCChHHHHHHHHHHHHHHCCCeEEEEEeCCCcchhhhhhcCceEEEeccc-------------hhHHHhhh
Q 002535 146 QLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTG-------------REKASFVN 212 (911)
Q Consensus 146 rIalI~~~L~~GGae~~v~~LAk~L~~~GyeV~V~t~~~g~~~~~~~~~gi~v~~l~~~-------------~~l~~lI~ 212 (911)
+|+++.+. .||.+..+..+++.|.+.||+|.+++....... .....++.+..++.. ..+...++
T Consensus 1 kIl~i~~~--~~g~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (359)
T cd03808 1 KILHIVTV--DGGLYSFRLPLIKALRAAGYEVHVVAPPGDELE-ELEALGVKVIPIPLDRRGINPFKDLKALLRLYRLLR 77 (359)
T ss_pred CeeEEEec--chhHHHHHHHHHHHHHhcCCeeEEEecCCCccc-ccccCCceEEeccccccccChHhHHHHHHHHHHHHH
Confidence 46777777 789999999999999999999999997664432 223344444443322 12344566
Q ss_pred hcCccEEEEcCcchhHHHHHHhhCCCCCCCEEEEEcCchhhHHHHHHHhhcchhhHhhHHHHHhhcceEEecCCcccccc
Q 002535 213 WLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRATVVVFPDYVLPMMY 292 (911)
Q Consensus 213 ~~kpDIIhvhs~~~~~~ia~L~~~~~~giPvV~tiH~~~L~~~l~k~~~~~~d~lIs~~~~~~~~a~~vvfpn~~l~ii~ 292 (911)
..+||+||+++.... .+..+..+.....+++++.|+............ .......+..+..++.+++.+.......
T Consensus 78 ~~~~dvv~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~d~ii~~s~~~~~~~ 153 (359)
T cd03808 78 KERPDIVHTHTPKPG-ILGRLAARLAGVPKVIYTVHGLGFVFTSGGLKR---RLYLLLERLALRFTDKVIFQNEDDRDLA 153 (359)
T ss_pred hcCCCEEEEccccch-hHHHHHHHHcCCCCEEEEecCcchhhccchhHH---HHHHHHHHHHHhhccEEEEcCHHHHHHH
Confidence 789999999987663 444444332456788888887332211111000 0111123344455666666654422111
Q ss_pred ---ccCCCCCEEEeCCCCCCcccccccCchhhHHHHHhhCCCCCCeEEEEEEeccccccccccHHHHHHHHHHhhhhccc
Q 002535 293 ---SAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSV 369 (911)
Q Consensus 293 ---~~id~~ki~VIpg~gVD~~~f~~~~~~~k~~lR~~lgi~~d~~vIL~VGsrl~~~KGiKg~dlLLeAl~~L~~~~p~ 369 (911)
...+..+..+++++++|...+...... ..+++++++++|+ +.+. ||++.+++++..+.+++++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~i~~~G~-~~~~---k~~~~li~~~~~l~~~~~~ 219 (359)
T cd03808 154 LKLGIIKKKKTVLIPGSGVDLDRFSPSPEP----------IPEDDPVFLFVAR-LLKD---KGIDELLEAARILKAKGPN 219 (359)
T ss_pred HHhcCCCcCceEEecCCCCChhhcCccccc----------cCCCCcEEEEEec-cccc---cCHHHHHHHHHHHHhcCCC
Confidence 111113344444567877443222110 2456789999994 5555 9999999999999877777
Q ss_pred CCCCCCCEEEEEEe-CCCCCchHHHHHH-HHHHcCCCCccEEEccccccHHHHHHHcCeeEEcccCCcCCccHHHHHHHH
Q 002535 370 ENESNSPIKVMILS-GDSTSNYSVVIEA-IAHNLHYPLGVVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALC 447 (911)
Q Consensus 370 ~~~~~~~vkLvIVG-G~~~e~Y~~~Le~-la~~lgL~~~~V~flG~v~dV~~~L~~ADVfVlPS~~E~qGFplvLLEAMA 447 (911)
++|+|+| ++.. ...+. .+.+.+..+ +|.++|+.+++.++|+.||++++||..| |+|++++|||+
T Consensus 220 -------~~l~i~G~~~~~----~~~~~~~~~~~~~~~-~v~~~g~~~~~~~~~~~adi~i~ps~~e--~~~~~~~Ea~~ 285 (359)
T cd03808 220 -------VRLLLVGDGDEE----NPAAILEIEKLGLEG-RVEFLGFRDDVPELLAAADVFVLPSYRE--GLPRVLLEAMA 285 (359)
T ss_pred -------eEEEEEcCCCcc----hhhHHHHHHhcCCcc-eEEEeeccccHHHHHHhccEEEecCccc--CcchHHHHHHH
Confidence 9999999 6544 22222 255666766 8999999999999999999999999987 79999999999
Q ss_pred cCCCEEecCCCccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH-HhcCHHHHHHHHH
Q 002535 448 FRKPIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSV-KNLMALETIEGYA 522 (911)
Q Consensus 448 ~G~PVIaTd~gGi~EiV~dg~nGlLv~~~D~eaLAeaI~~LLsd~~~p~~~~~mg~~ar~~a-e~Fs~e~ia~~y~ 522 (911)
||+|||+++.++..+++.++.+|++++++|+++++++|.+++++ ++.+.++++++++.+ ++|+++.+++.|.
T Consensus 286 ~G~Pvi~s~~~~~~~~i~~~~~g~~~~~~~~~~~~~~i~~l~~~---~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 358 (359)
T cd03808 286 MGRPVIATDVPGCREAVIDGVNGFLVPPGDAEALADAIERLIED---PELRARMGQAARKRAEEEFDEEIVVKKLL 358 (359)
T ss_pred cCCCEEEecCCCchhhhhcCcceEEECCCCHHHHHHHHHHHHhC---HHHHHHHHHHHHHHHHHhcCHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999 999999999999997 7799999998875
No 33
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.97 E-value=1.3e-29 Score=278.25 Aligned_cols=347 Identities=19% Similarity=0.217 Sum_probs=248.0
Q ss_pred EEEEEeCCCC--CChHHHHHHHHHHHHHHCCCeEEEEEeCCCcchhhh-hhcCce----------EEEeccchhHHHhhh
Q 002535 146 QLALVFPDLL--IDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVW-RNIGVP----------VAILQTGREKASFVN 212 (911)
Q Consensus 146 rIalI~~~L~--~GGae~~v~~LAk~L~~~GyeV~V~t~~~g~~~~~~-~~~gi~----------v~~l~~~~~l~~lI~ 212 (911)
||++|.+... .||.+..+..++++|.++||+|.+++.......... ....++ -........+...++
T Consensus 1 kIl~i~~~~~p~~~G~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (364)
T cd03814 1 RIAIVTDTFLPQVNGVVRTLQRLVEHLRARGHEVLVIAPGPFRESEGPARVVPVPSVPLPGYPEIRLALPPRRRVRRLLD 80 (364)
T ss_pred CeEEEecccCccccceehHHHHHHHHHHHCCCEEEEEeCCchhhccCCCCceeecccccCcccceEecccchhhHHHHHH
Confidence 4677775543 489999999999999999999999997653211100 000000 011122234455567
Q ss_pred hcCccEEEEcCcchhHHHHHHhhCCCCCCCEEEEEcCchhhHHHHHHHhhcchhh-HhhHHHHHhhcceEEecCCccccc
Q 002535 213 WLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLEL-LNDWKKVFNRATVVVFPDYVLPMM 291 (911)
Q Consensus 213 ~~kpDIIhvhs~~~~~~ia~L~~~~~~giPvV~tiH~~~L~~~l~k~~~~~~d~l-Is~~~~~~~~a~~vvfpn~~l~ii 291 (911)
..+||+||+++............ +..++|+++++|+..... ............ ....+..+..++.+++++......
T Consensus 81 ~~~pdii~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~s~~~~~~ 158 (364)
T cd03814 81 AFAPDVVHIATPGPLGLAALRAA-RRLGIPVVTSYHTDFPEY-LRYYGLGPLSWLAWAYLRWFHNRADRVLVPSPSLADE 158 (364)
T ss_pred hcCCCEEEEeccchhhHHHHHHH-HHcCCCEEEEEecChHHH-hhhcccchHhHhhHHHHHHHHHhCCEEEeCCHHHHHH
Confidence 78999999997765333333333 356799999999732211 111111111111 123344556677777776654332
Q ss_pred cccCCCCCEEEeCCCCCCcccccccCchhhHHHHHhhCCCCCCeEEEEEEeccccccccccHHHHHHHHHHhhhhcccCC
Q 002535 292 YSAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVEN 371 (911)
Q Consensus 292 ~~~id~~ki~VIpg~gVD~~~f~~~~~~~k~~lR~~lgi~~d~~vIL~VGsrl~~~KGiKg~dlLLeAl~~L~~~~p~~~ 371 (911)
.......++.+++ .|+|...+.+... ....+++++ .+++++++++| ++... ||++.+++++..+.++ ++
T Consensus 159 ~~~~~~~~~~~~~-~g~~~~~~~~~~~--~~~~~~~~~-~~~~~~i~~~G-~~~~~---k~~~~~i~~~~~l~~~-~~-- 227 (364)
T cd03814 159 LRARGFRRVRLWP-RGVDTELFHPRRR--DEALRARLG-PPDRPVLLYVG-RLAPE---KNLEALLDADLPLRRR-PP-- 227 (364)
T ss_pred HhccCCCceeecC-CCccccccCcccc--cHHHHHHhC-CCCCeEEEEEe-ccccc---cCHHHHHHHHHHhhhc-CC--
Confidence 2333345777887 4888754433221 233445555 45677899999 45554 9999999999999876 66
Q ss_pred CCCCCEEEEEEe-CCCCCchHHHHHHHHHHcCCCCccEEEcccc--ccHHHHHHHcCeeEEcccCCcCCccHHHHHHHHc
Q 002535 372 ESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAAE--GDVDSVLNTADVVIYGSFLEEQTFPEILVKALCF 448 (911)
Q Consensus 372 ~~~~~vkLvIVG-G~~~e~Y~~~Le~la~~lgL~~~~V~flG~v--~dV~~~L~~ADVfVlPS~~E~qGFplvLLEAMA~ 448 (911)
++++++| |+.. ..++ +..+ +|.++|+. +++.++|+.||++++||..| |||++++|||||
T Consensus 228 -----~~l~i~G~~~~~----~~~~------~~~~-~v~~~g~~~~~~~~~~~~~~d~~l~~s~~e--~~~~~~lEa~a~ 289 (364)
T cd03814 228 -----VRLVIVGDGPAR----ARLE------ARYP-NVHFLGFLDGEELAAAYASADVFVFPSRTE--TFGLVVLEAMAS 289 (364)
T ss_pred -----ceEEEEeCCchH----HHHh------ccCC-cEEEEeccCHHHHHHHHHhCCEEEECcccc--cCCcHHHHHHHc
Confidence 9999999 6553 3332 3444 79999964 78999999999999999988 799999999999
Q ss_pred CCCEEecCCCccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 002535 449 RKPIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSVKNLMALETIEGYAMLLE 526 (911)
Q Consensus 449 G~PVIaTd~gGi~EiV~dg~nGlLv~~~D~eaLAeaI~~LLsd~~~p~~~~~mg~~ar~~ae~Fs~e~ia~~y~~Lye 526 (911)
|+|||+++.++..+++.++.+|+++++.|.++++++|.++++| ++.+.+|++++++.+++|+|+++++.+.++|+
T Consensus 290 g~PvI~~~~~~~~~~i~~~~~g~~~~~~~~~~l~~~i~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (364)
T cd03814 290 GLPVVAPDAGGPADIVTDGENGLLVEPGDAEAFAAALAALLAD---PELRRRMAARARAEAERRSWEAFLDNLLEAYR 364 (364)
T ss_pred CCCEEEcCCCCchhhhcCCcceEEcCCCCHHHHHHHHHHHHcC---HHHHHHHHHHHHHHHhhcCHHHHHHHHHHhhC
Confidence 9999999999999999998999999999999999999999999 99999999999999988999999999998873
No 34
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=99.97 E-value=3.2e-29 Score=274.62 Aligned_cols=352 Identities=18% Similarity=0.195 Sum_probs=251.5
Q ss_pred EEEEEeCCC--CCChHHHHHHHHHHHHHHCCCeEEEEEeCCCcchhhhhhcCceEEE------------eccchhHHHhh
Q 002535 146 QLALVFPDL--LIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAI------------LQTGREKASFV 211 (911)
Q Consensus 146 rIalI~~~L--~~GGae~~v~~LAk~L~~~GyeV~V~t~~~g~~~~~~~~~gi~v~~------------l~~~~~l~~lI 211 (911)
||+++.... ..||.+..+..+++.|.+.||+|.+++..............+.... ......+...+
T Consensus 1 kil~~~~~~~p~~~G~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (374)
T cd03817 1 KIGIFTDTYLPQVNGVATSIRRLAEELEKRGHEVYVVAPSYPGAPEEEEVVVVRPFRVPTFKYPDFRLPLPIPRALIIIL 80 (374)
T ss_pred CeeEeehhccCCCCCeehHHHHHHHHHHHcCCeEEEEeCCCCCCCcccccccccccccccchhhhhhccccHHHHHHHHH
Confidence 467777655 4689999999999999999999999997654322111111111100 11112233346
Q ss_pred hhcCccEEEEcCcchhHHHHHHhhCCCCCCCEEEEEcCchhhH--HHHHHHhhcchhhH-hhHHHHHhhcceEEecCCcc
Q 002535 212 NWLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLAT--RARNYASSGQLELL-NDWKKVFNRATVVVFPDYVL 288 (911)
Q Consensus 212 ~~~kpDIIhvhs~~~~~~ia~L~~~~~~giPvV~tiH~~~L~~--~l~k~~~~~~d~lI-s~~~~~~~~a~~vvfpn~~l 288 (911)
...+||+||++++......+.... +..++|+|++.|+..... .............. ......+..++.+++++...
T Consensus 81 ~~~~~Div~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~s~~~ 159 (374)
T cd03817 81 KELGPDIVHTHTPFSLGLLGLRVA-RKLGIPVVATYHTMYEDYTHYVPLGRLLARAVVRRKLSRRFYNRCDAVIAPSEKI 159 (374)
T ss_pred hhcCCCEEEECCchhhhhHHHHHH-HHcCCCEEEEecCCHHHHHHHHhcccchhHHHHHHHHHHHHhhhCCEEEeccHHH
Confidence 678999999998866433343333 356899999999632210 00000000001111 23455566778777766552
Q ss_pred cccccc-CCCCCEEEeCCCCCCcccccccCchhhHHHHHhhCCCCCCeEEEEEEeccccccccccHHHHHHHHHHhhhhc
Q 002535 289 PMMYSA-FDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEV 367 (911)
Q Consensus 289 ~ii~~~-id~~ki~VIpg~gVD~~~f~~~~~~~k~~lR~~lgi~~d~~vIL~VGsrl~~~KGiKg~dlLLeAl~~L~~~~ 367 (911)
...... ....++.++| +++|...+... .....++.++..+++++++++|+. .+. ||++.+++++..+.++.
T Consensus 160 ~~~~~~~~~~~~~~vi~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~~~G~~-~~~---k~~~~l~~~~~~~~~~~ 231 (374)
T cd03817 160 ADLLREYGVKRPIEVIP-TGIDLDRFEPV---DGDDERRKLGIPEDEPVLLYVGRL-AKE---KNIDFLIRAFARLLKEE 231 (374)
T ss_pred HHHHHhcCCCCceEEcC-CccchhccCcc---chhHHHHhcCCCCCCeEEEEEeee-ecc---cCHHHHHHHHHHHHHhC
Confidence 221111 1234578888 48887443332 223335667777888899999954 444 99999999999998876
Q ss_pred ccCCCCCCCEEEEEEe-CCCCCchHHHHHHHHHHcCCCCccEEEcccc--ccHHHHHHHcCeeEEcccCCcCCccHHHHH
Q 002535 368 SVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAAE--GDVDSVLNTADVVIYGSFLEEQTFPEILVK 444 (911)
Q Consensus 368 p~~~~~~~~vkLvIVG-G~~~e~Y~~~Le~la~~lgL~~~~V~flG~v--~dV~~~L~~ADVfVlPS~~E~qGFplvLLE 444 (911)
++ ++++++| |+.. +.+++.++++++.+ +|.++|++ +++.++|+.||++++||..| |+|++++|
T Consensus 232 ~~-------~~l~i~G~~~~~----~~~~~~~~~~~~~~-~v~~~g~~~~~~~~~~~~~ad~~l~~s~~e--~~~~~~~E 297 (374)
T cd03817 232 PD-------VKLVIVGDGPER----EELEELARELGLAD-RVIFTGFVPREELPDYYKAADLFVFASTTE--TQGLVLLE 297 (374)
T ss_pred CC-------eEEEEEeCCchH----HHHHHHHHHcCCCC-cEEEeccCChHHHHHHHHHcCEEEeccccc--CcChHHHH
Confidence 66 9999999 6654 77888888888887 89999987 78999999999999999988 79999999
Q ss_pred HHHcCCCEEecCCCccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 002535 445 ALCFRKPIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSVKNLMALETIEGYAML 524 (911)
Q Consensus 445 AMA~G~PVIaTd~gGi~EiV~dg~nGlLv~~~D~eaLAeaI~~LLsd~~~p~~~~~mg~~ar~~ae~Fs~e~ia~~y~~L 524 (911)
||+||+|||+++.++..+++.++.+|+++++++. +++++|.+++++ ++.+++|++++++.++++. .++.+.++
T Consensus 298 a~~~g~PvI~~~~~~~~~~i~~~~~g~~~~~~~~-~~~~~i~~l~~~---~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 370 (374)
T cd03817 298 AMAAGLPVVAVDAPGLPDLVADGENGFLFPPGDE-ALAEALLRLLQD---PELRRRLSKNAEESAEKFS---FAKKVEKL 370 (374)
T ss_pred HHHcCCcEEEeCCCChhhheecCceeEEeCCCCH-HHHHHHHHHHhC---hHHHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 9999999999999999999999999999998887 999999999999 9999999999999997766 55666666
Q ss_pred HHH
Q 002535 525 LEN 527 (911)
Q Consensus 525 ye~ 527 (911)
|++
T Consensus 371 ~~~ 373 (374)
T cd03817 371 YEE 373 (374)
T ss_pred Hhc
Confidence 654
No 35
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=99.97 E-value=9.1e-30 Score=286.33 Aligned_cols=336 Identities=14% Similarity=0.114 Sum_probs=234.0
Q ss_pred CEEEEEeCCC-CCChHHHHHHHHHHHHHHC--CCeEEEEEeCCCcchhhhhhcCc-------eEEEe---ccchhHHHhh
Q 002535 145 PQLALVFPDL-LIDPQQLQMVTIAIALREI--GYAIQVYSLEDGRAHEVWRNIGV-------PVAIL---QTGREKASFV 211 (911)
Q Consensus 145 prIalI~~~L-~~GGae~~v~~LAk~L~~~--GyeV~V~t~~~g~~~~~~~~~gi-------~v~~l---~~~~~l~~lI 211 (911)
+||+++.+.. ..||+|+++.++++.|.+. |++|.+++.............+. .+..+ .....+.+.+
T Consensus 1 mkI~~~~~~~~~~GG~e~~~~~l~~~L~~~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 80 (359)
T PRK09922 1 MKIAFIGEAVSGFGGMETVISNVINTFEESKINCEMFFFCRNDKMDKAWLKEIKYAQSFSNIKLSFLRRAKHVYNFSKWL 80 (359)
T ss_pred CeeEEecccccCCCchhHHHHHHHHHhhhcCcceeEEEEecCCCCChHHHHhcchhcccccchhhhhcccHHHHHHHHHH
Confidence 4789998876 4699999999999999999 88999888755432222222221 11111 1123455667
Q ss_pred hhcCccEEEEcCcchhHHHHHHhhCC-CCCCCEEEEEcCchhhHHHHHHHhhcchhhHhhHHHHHhhcceEEecCCcc--
Q 002535 212 NWLNYDGILVNSLEAKVVISNIMQEP-FKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRATVVVFPDYVL-- 288 (911)
Q Consensus 212 ~~~kpDIIhvhs~~~~~~ia~L~~~~-~~giPvV~tiH~~~L~~~l~k~~~~~~d~lIs~~~~~~~~a~~vvfpn~~l-- 288 (911)
+..+||+||+|+.... .+..++.+. ....+++.+.|.......... ...+..++.++..+...
T Consensus 81 ~~~~~Dii~~~~~~~~-~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~-------------~~~~~~~d~~i~~S~~~~~ 146 (359)
T PRK09922 81 KETQPDIVICIDVISC-LYANKARKKSGKQFKIFSWPHFSLDHKKHAE-------------CKKITCADYHLAISSGIKE 146 (359)
T ss_pred HhcCCCEEEEcCHHHH-HHHHHHHHHhCCCCeEEEEecCcccccchhh-------------hhhhhcCCEEEEcCHHHHH
Confidence 8889999999987652 444443221 222455666674211110000 00123445555544431
Q ss_pred ccccccCCCCCEEEeCCCCCCcccccccCchhhHHHHHhhCCCCCCeEEEEEEeccccccccccHHHHHHHHHHhhhhcc
Q 002535 289 PMMYSAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVS 368 (911)
Q Consensus 289 ~ii~~~id~~ki~VIpg~gVD~~~f~~~~~~~k~~lR~~lgi~~d~~vIL~VGsrl~~~KGiKg~dlLLeAl~~L~~~~p 368 (911)
.+...+++.+++.+||| |+|...+....+ ...++++++++|+.. . ++.||++.+++|+..+..
T Consensus 147 ~~~~~~~~~~ki~vi~N-~id~~~~~~~~~-----------~~~~~~~i~~~Grl~-~-~~~k~~~~l~~a~~~~~~--- 209 (359)
T PRK09922 147 QMMARGISAQRISVIYN-PVEIKTIIIPPP-----------ERDKPAVFLYVGRLK-F-EGQKNVKELFDGLSQTTG--- 209 (359)
T ss_pred HHHHcCCCHHHEEEEcC-CCCHHHccCCCc-----------ccCCCcEEEEEEEEe-c-ccCcCHHHHHHHHHhhCC---
Confidence 12223455678999995 888532211110 123467899999543 2 235999999999988743
Q ss_pred cCCCCCCCEEEEEEe-CCCCCchHHHHHHHHHHcCCCCccEEEccccc----cHHHHHHHcCeeEEcccCCcCCccHHHH
Q 002535 369 VENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEG----DVDSVLNTADVVIYGSFLEEQTFPEILV 443 (911)
Q Consensus 369 ~~~~~~~~vkLvIVG-G~~~e~Y~~~Le~la~~lgL~~~~V~flG~v~----dV~~~L~~ADVfVlPS~~E~qGFplvLL 443 (911)
+ ++++|+| |+.. +.++++++++++++ +|+|+|+++ ++.++|+.+|++|+||..| |||++++
T Consensus 210 ~-------~~l~ivG~g~~~----~~l~~~~~~~~l~~-~v~f~G~~~~~~~~~~~~~~~~d~~v~~s~~E--gf~~~~l 275 (359)
T PRK09922 210 E-------WQLHIIGDGSDF----EKCKAYSRELGIEQ-RIIWHGWQSQPWEVVQQKIKNVSALLLTSKFE--GFPMTLL 275 (359)
T ss_pred C-------eEEEEEeCCccH----HHHHHHHHHcCCCC-eEEEecccCCcHHHHHHHHhcCcEEEECCccc--CcChHHH
Confidence 3 8999999 8765 78899999999988 899999874 4677788899999999998 7999999
Q ss_pred HHHHcCCCEEecC-CCccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHH
Q 002535 444 KALCFRKPIIAPD-LSNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSVKNLMALETIEGYA 522 (911)
Q Consensus 444 EAMA~G~PVIaTd-~gGi~EiV~dg~nGlLv~~~D~eaLAeaI~~LLsd~~~p~~~~~mg~~ar~~ae~Fs~e~ia~~y~ 522 (911)
||||||+|||+++ .+|..|+|.++.+|++++++|+++++++|.+++++ ++.+. ..+..+.+++|+.+...+++.
T Consensus 276 EAma~G~Pvv~s~~~~g~~eiv~~~~~G~lv~~~d~~~la~~i~~l~~~---~~~~~--~~~~~~~~~~~~~~~~~~~~~ 350 (359)
T PRK09922 276 EAMSYGIPCISSDCMSGPRDIIKPGLNGELYTPGNIDEFVGKLNKVISG---EVKYQ--HDAIPNSIERFYEVLYFKNLN 350 (359)
T ss_pred HHHHcCCCEEEeCCCCChHHHccCCCceEEECCCCHHHHHHHHHHHHhC---cccCC--HHHHHHHHHHhhHHHHHHHHH
Confidence 9999999999999 89999999999999999999999999999999999 76431 122233457788888888888
Q ss_pred HHHHHHhc
Q 002535 523 MLLENVLK 530 (911)
Q Consensus 523 ~Lye~vL~ 530 (911)
++|+++++
T Consensus 351 ~~~~~~~~ 358 (359)
T PRK09922 351 NALFSKLQ 358 (359)
T ss_pred HHHHHHhc
Confidence 88887653
No 36
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=99.97 E-value=2.6e-29 Score=276.56 Aligned_cols=347 Identities=19% Similarity=0.147 Sum_probs=243.4
Q ss_pred EEEEEeCCCC-CChHHHHHHHHHHHHHHCCCeEEEEEeCCCcchhhhhhc--CceEEE---eccchhHHHhhhhcCccEE
Q 002535 146 QLALVFPDLL-IDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNI--GVPVAI---LQTGREKASFVNWLNYDGI 219 (911)
Q Consensus 146 rIalI~~~L~-~GGae~~v~~LAk~L~~~GyeV~V~t~~~g~~~~~~~~~--gi~v~~---l~~~~~l~~lI~~~kpDII 219 (911)
||++|.+... .||.+.++.++++.|.+.||+|.+++............. ...... ......+...++..+||+|
T Consensus 1 kI~~v~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dii 80 (366)
T cd03822 1 RIALVSPYPPRKCGIATFTTDLVNALSARGPDVLVVSVAALYPSLLYGGEQEVVRVIVLDNPLDYRRAARAIRLSGPDVV 80 (366)
T ss_pred CeEEecCCCCCCCcHHHHHHHHHHHhhhcCCeEEEEEeecccCcccCCCcccceeeeecCCchhHHHHHHHHhhcCCCEE
Confidence 5788887766 799999999999999999999999987653311111110 111111 1112234456777899999
Q ss_pred EEcCcch--hHHHHHHh--hCCCCCCCEEEEEcCchhhHHHHHHHhhcchhhHhhHHHHHhhcceEEecC-Ccccccccc
Q 002535 220 LVNSLEA--KVVISNIM--QEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRATVVVFPD-YVLPMMYSA 294 (911)
Q Consensus 220 hvhs~~~--~~~ia~L~--~~~~~giPvV~tiH~~~L~~~l~k~~~~~~d~lIs~~~~~~~~a~~vvfpn-~~l~ii~~~ 294 (911)
|+++... .+.....+ .....++|+|++.|+........ .........+..++.+++++ .........
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~--------~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~ 152 (366)
T cd03822 81 VIQHEYGIFGGEAGLYLLLLLRGLGIPVVVTLHTVLLHEPRP--------GDRALLRLLLRRADAVIVMSSELLRALLLR 152 (366)
T ss_pred EEeeccccccchhhHHHHHHHhhcCCCEEEEEecCCccccch--------hhhHHHHHHHhcCCEEEEeeHHHHHHHHhh
Confidence 9987321 01111111 11246799999999851110000 00011233345566666653 211111111
Q ss_pred CCCCCEEEeCCCCCCcccccccCchhhHHHHHhhCCCCCCeEEEEEEeccccccccccHHHHHHHHHHhhhhcccCCCCC
Q 002535 295 FDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESN 374 (911)
Q Consensus 295 id~~ki~VIpg~gVD~~~f~~~~~~~k~~lR~~lgi~~d~~vIL~VGsrl~~~KGiKg~dlLLeAl~~L~~~~p~~~~~~ 374 (911)
...+++.++|+ +++...+... .. .++.....+.++++++| ++.+. ||++.+++|+..+.++.++
T Consensus 153 ~~~~~~~~i~~-~~~~~~~~~~---~~---~~~~~~~~~~~~i~~~G-~~~~~---K~~~~ll~a~~~~~~~~~~----- 216 (366)
T cd03822 153 AYPEKIAVIPH-GVPDPPAEPP---ES---LKALGGLDGRPVLLTFG-LLRPY---KGLELLLEALPLLVAKHPD----- 216 (366)
T ss_pred cCCCcEEEeCC-CCcCcccCCc---hh---hHhhcCCCCCeEEEEEe-eccCC---CCHHHHHHHHHHHHhhCCC-----
Confidence 11468899984 7776332211 11 13344556778999999 45554 9999999999999988777
Q ss_pred CCEEEEEEe-CCCCCchHHHHH----HHHHHcCCCCccEEEccc-c--ccHHHHHHHcCeeEEcccCCcCCccHHHHHHH
Q 002535 375 SPIKVMILS-GDSTSNYSVVIE----AIAHNLHYPLGVVKHMAA-E--GDVDSVLNTADVVIYGSFLEEQTFPEILVKAL 446 (911)
Q Consensus 375 ~~vkLvIVG-G~~~e~Y~~~Le----~la~~lgL~~~~V~flG~-v--~dV~~~L~~ADVfVlPS~~E~qGFplvLLEAM 446 (911)
++|+|+| |.... ...+ ++++++++.+ +|.++|. . +++.++|+.||++++||..|.+|+|++++|||
T Consensus 217 --~~l~i~G~~~~~~---~~~~~~~~~~i~~~~~~~-~v~~~~~~~~~~~~~~~~~~ad~~v~ps~~e~~~~~~~~~Ea~ 290 (366)
T cd03822 217 --VRLLVAGETHPDL---ERYRGEAYALAERLGLAD-RVIFINRYLPDEELPELFSAADVVVLPYRSADQTQSGVLAYAI 290 (366)
T ss_pred --eEEEEeccCccch---hhhhhhhHhHHHhcCCCC-cEEEecCcCCHHHHHHHHhhcCEEEecccccccccchHHHHHH
Confidence 9999999 54331 1111 2377888887 8999986 4 78999999999999999988556999999999
Q ss_pred HcCCCEEecCCCccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 002535 447 CFRKPIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSVKNLMALETIEGYAMLLE 526 (911)
Q Consensus 447 A~G~PVIaTd~gGi~EiV~dg~nGlLv~~~D~eaLAeaI~~LLsd~~~p~~~~~mg~~ar~~ae~Fs~e~ia~~y~~Lye 526 (911)
++|+|||+++.++ .+.+.++.+|++++++|+++++++|.+++++ ++.+.+|++++++.+++|+|+++++.|.++|+
T Consensus 291 a~G~PvI~~~~~~-~~~i~~~~~g~~~~~~d~~~~~~~l~~l~~~---~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 366 (366)
T cd03822 291 GFGKPVISTPVGH-AEEVLDGGTGLLVPPGDPAALAEAIRRLLAD---PELAQALRARAREYARAMSWERVAERYLRLLA 366 (366)
T ss_pred HcCCCEEecCCCC-hheeeeCCCcEEEcCCCHHHHHHHHHHHHcC---hHHHHHHHHHHHHHHhhCCHHHHHHHHHHHhC
Confidence 9999999999999 7777788899999999999999999999999 99999999999999977999999999998873
No 37
>PRK10125 putative glycosyl transferase; Provisional
Probab=99.97 E-value=5e-30 Score=293.96 Aligned_cols=337 Identities=14% Similarity=0.145 Sum_probs=221.6
Q ss_pred CEEEEEeCCCCCChHHHHHHHHHHHHHHCCCeEEEEEeCCCcchh--hhhhcCc--------------------eEEEec
Q 002535 145 PQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHE--VWRNIGV--------------------PVAILQ 202 (911)
Q Consensus 145 prIalI~~~L~~GGae~~v~~LAk~L~~~GyeV~V~t~~~g~~~~--~~~~~gi--------------------~v~~l~ 202 (911)
+||++|+..+..||+|+++..|++.|.+.||+|.++......... ..+.... ....+.
T Consensus 1 mkil~i~~~l~~GGaeri~~~L~~~l~~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (405)
T PRK10125 1 MNILQFNVRLAEGGAAGVALDLHQRALQQGLASHFVYGYGKGGKESVSHQNYPQVIKHTPRMTAMANIALFRLFNRDLFG 80 (405)
T ss_pred CeEEEEEeeecCCchhHHHHHHHHHHHhcCCeEEEEEecCCCcccccccCCcceEEEecccHHHHHHHHHHHhcchhhcc
Confidence 589999999999999999999999999999999998875422111 0000000 001111
Q ss_pred cchhHHHhh-hhcCccEEEEcCcchh----HHHHHH---hhCCCCCCCEEEEEcCchhh-----H--HHHHHH-------
Q 002535 203 TGREKASFV-NWLNYDGILVNSLEAK----VVISNI---MQEPFKSLPLVWTIHEGTLA-----T--RARNYA------- 260 (911)
Q Consensus 203 ~~~~l~~lI-~~~kpDIIhvhs~~~~----~~ia~L---~~~~~~giPvV~tiH~~~L~-----~--~l~k~~------- 260 (911)
......+++ +..+|||||+|..... ..+..+ +.....++|+|||.|+.... + ...++.
T Consensus 81 ~~~~~~~~i~~~~~pDviHlH~~~~~~~~~~~l~~~~~~~~~~~~~~piV~TlHd~~~~tg~c~~~~~C~~~~~~c~~Cp 160 (405)
T PRK10125 81 NFNELYRTITRTPGPVVLHFHVLHSYWLNLKSVVRFCEKVKNHKPDVTLVWTLHDHWSVTGRCAFTDGCEGWKTGCQKCP 160 (405)
T ss_pred hHHHHHHHHhhccCCCEEEEecccCceecHHHHHHHHhhhhcccCCCCEEEecccccccCCCcCCCcccccccccCCCCC
Confidence 222334445 5679999999987752 111111 11234578999999983211 0 000110
Q ss_pred ------hhcch---hhHhh----HHHHHhhcceEEecCCccccc-cccCCCCCEEEeCCCCCCcccccccCchhhHHHHH
Q 002535 261 ------SSGQL---ELLND----WKKVFNRATVVVFPDYVLPMM-YSAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRV 326 (911)
Q Consensus 261 ------~~~~d---~lIs~----~~~~~~~a~~vvfpn~~l~ii-~~~id~~ki~VIpg~gVD~~~f~~~~~~~k~~lR~ 326 (911)
....+ ..... +...++.+..++.++..+... ...+...++.+||| |+|...+.+.+.. ...
T Consensus 161 ~l~~~~~~~~d~~~~~~~~k~~~~~~~~~~~~~iV~~S~~l~~~~~~~~~~~~i~vI~N-Gid~~~~~~~~~~--~~~-- 235 (405)
T PRK10125 161 TLNNYPPVKVDRAHQLVAGKRQLFREMLALGCQFISPSQHVADAFNSLYGPGRCRIINN-GIDMATEAILAEL--PPV-- 235 (405)
T ss_pred CccCCCCCccchHHHHHHHHHHHHHHHhhcCcEEEEcCHHHHHHHHHHcCCCCEEEeCC-CcCcccccccccc--ccc--
Confidence 00001 11111 122222334566666552221 12233578999995 9997432222111 000
Q ss_pred hhCCCCCCeEEEEEEeccc-cccccccHHHHHHHHHHhhhhcccCCCCCCCEEEEEEe-CCCCCchHHHHHHHHHHcCCC
Q 002535 327 KMGFKPDDLVIAIVGTQFM-YRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYP 404 (911)
Q Consensus 327 ~lgi~~d~~vIL~VGsrl~-~~KGiKg~dlLLeAl~~L~~~~p~~~~~~~~vkLvIVG-G~~~e~Y~~~Le~la~~lgL~ 404 (911)
..++++++++++|+... ++ ||++.+++|+..+. ++ ++|+|+| |+... .
T Consensus 236 --~~~~~~~~il~v~~~~~~~~---Kg~~~li~A~~~l~---~~-------~~L~ivG~g~~~~---------------~ 285 (405)
T PRK10125 236 --RETQGKPKIAVVAHDLRYDG---KTDQQLVREMMALG---DK-------IELHTFGKFSPFT---------------A 285 (405)
T ss_pred --ccCCCCCEEEEEEeccccCC---ccHHHHHHHHHhCC---CC-------eEEEEEcCCCccc---------------c
Confidence 11345678999996342 44 89999999999863 23 8999999 64320 1
Q ss_pred CccEEEcccc---ccHHHHHHHcCeeEEcccCCcCCccHHHHHHHHcCCCEEecCCCccccccccCccEEEEcCCCHHHH
Q 002535 405 LGVVKHMAAE---GDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSNIRKYVDDRVNGYLFPKENIKAL 481 (911)
Q Consensus 405 ~~~V~flG~v---~dV~~~L~~ADVfVlPS~~E~qGFplvLLEAMA~G~PVIaTd~gGi~EiV~dg~nGlLv~~~D~eaL 481 (911)
. .|.++|+. .++.++|++||+||+||..| |||++++||||||+|||+|++||++|++.++ +|++++++|+++|
T Consensus 286 ~-~v~~~g~~~~~~~l~~~y~~aDvfV~pS~~E--gfp~vilEAmA~G~PVVat~~gG~~Eiv~~~-~G~lv~~~d~~~L 361 (405)
T PRK10125 286 G-NVVNHGFETDKRKLMSALNQMDALVFSSRVD--NYPLILCEALSIGVPVIATHSDAAREVLQKS-GGKTVSEEEVLQL 361 (405)
T ss_pred c-ceEEecCcCCHHHHHHHHHhCCEEEECCccc--cCcCHHHHHHHcCCCEEEeCCCChHHhEeCC-cEEEECCCCHHHH
Confidence 2 57888865 56899999999999999988 7999999999999999999999999999875 8999999999999
Q ss_pred HHHHHHHHHcCCCcHHHHH----HHHHHHHHH-HhcCHHHHHHHHHHHHHHH
Q 002535 482 THIILQVITNGKISPFARN----IASIGRRSV-KNLMALETIEGYAMLLENV 528 (911)
Q Consensus 482 AeaI~~LLsd~~~p~~~~~----mg~~ar~~a-e~Fs~e~ia~~y~~Lye~v 528 (911)
|+++ + +...++ +..++++.+ ++|+++.++++|.++|+++
T Consensus 362 a~~~-----~---~~~~~~~~~~~~~~~r~~~~~~fs~~~~~~~y~~lY~~l 405 (405)
T PRK10125 362 AQLS-----K---PEIAQAVFGTTLAEFSQRSRAAYSGQQMLEEYVNFYQNL 405 (405)
T ss_pred Hhcc-----C---HHHHHHhhhhHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 9864 3 333332 235578887 6699999999999999863
No 38
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=99.97 E-value=2.7e-29 Score=292.50 Aligned_cols=357 Identities=18% Similarity=0.178 Sum_probs=247.1
Q ss_pred EEEEEeCCC----CCChHHHHHHHHHHHHHHCCCeEEEEEeCCCcchhhh--------------------------hhcC
Q 002535 146 QLALVFPDL----LIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVW--------------------------RNIG 195 (911)
Q Consensus 146 rIalI~~~L----~~GGae~~v~~LAk~L~~~GyeV~V~t~~~g~~~~~~--------------------------~~~g 195 (911)
+|++|.+.. ..||...++..|+++|+++||+|.|+++..+...... ...|
T Consensus 1 ~Il~v~~E~~p~~k~GGl~~~~~~L~~aL~~~G~~V~Vi~p~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 80 (476)
T cd03791 1 KVLFVASEVAPFAKTGGLGDVVGALPKALAKLGHDVRVIMPKYGRILDELRGQLLVLRLFGVPVGGRPEYVGVFELPVDG 80 (476)
T ss_pred CEEEEEccccccccCCcHHHHHHHHHHHHHHCCCeEEEEecCCcchhhHhccCeEEEEEEeeccCCceeEEEEEEEEeCC
Confidence 467777654 5799999999999999999999999997654322110 1123
Q ss_pred ceEEEeccch---------------------------hHHHhhhh--cCccEEEEcCcchhHHHHHHhhCC-----CCCC
Q 002535 196 VPVAILQTGR---------------------------EKASFVNW--LNYDGILVNSLEAKVVISNIMQEP-----FKSL 241 (911)
Q Consensus 196 i~v~~l~~~~---------------------------~l~~lI~~--~kpDIIhvhs~~~~~~ia~L~~~~-----~~gi 241 (911)
++++.+.... ....++.. .+|||||+|.+... .+..++... +.++
T Consensus 81 v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~l~~~~~~pDviH~hd~~t~-~~~~~l~~~~~~~~~~~~ 159 (476)
T cd03791 81 VPVYFLDNPDYFDRPGLYDDSGYDYEDNAERFALFSRAALELLRRLGWKPDIIHCHDWHTG-LVPALLKEKYADPFFKNI 159 (476)
T ss_pred ceEEEEcChHHcCCCCCCCccCCCCccHHHHHHHHHHHHHHHHHhcCCCCcEEEECchHHH-HHHHHHHHhhccccCCCC
Confidence 4444332111 01122333 68999999998873 545444332 2589
Q ss_pred CEEEEEcCchhh-----HHHHHHHhh----------cchhhHhhHHHHHhhcceEEecCCcc--cccc----------cc
Q 002535 242 PLVWTIHEGTLA-----TRARNYASS----------GQLELLNDWKKVFNRATVVVFPDYVL--PMMY----------SA 294 (911)
Q Consensus 242 PvV~tiH~~~L~-----~~l~k~~~~----------~~d~lIs~~~~~~~~a~~vvfpn~~l--~ii~----------~~ 294 (911)
|+|+|+|+.... ..+...... .....+...+..+..++.++..+... .+.. ..
T Consensus 160 ~~v~tiH~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~v~~vS~~~~~~i~~~~~~~gl~~~~~ 239 (476)
T cd03791 160 KTVFTIHNLAYQGVFPLEALEDLGLPWEELFHIDGLEFYGQVNFLKAGIVYADAVTTVSPTYAREILTPEFGEGLDGLLR 239 (476)
T ss_pred CEEEEeCCCCCCCCCCHHHHHHcCCCccchhhhcccccCCcccHHHHHHHhcCcCeecCHhHHHHhCCCCCCcchHHHHH
Confidence 999999983221 111110000 00011223445556666665554331 1111 01
Q ss_pred CCCCCEEEeCCCCCCcccccccCch----------------hhHHHHHhhCCC--CCCeEEEEEEeccccccccccHHHH
Q 002535 295 FDAGNYYVIPGSPAKAWEADTNMDL----------------YNDTVRVKMGFK--PDDLVIAIVGTQFMYRGLWLEHALI 356 (911)
Q Consensus 295 id~~ki~VIpg~gVD~~~f~~~~~~----------------~k~~lR~~lgi~--~d~~vIL~VGsrl~~~KGiKg~dlL 356 (911)
....++.+|+| |+|...+.+.... .+..++++++++ ++.++++++|+ +.+. ||++.+
T Consensus 240 ~~~~ki~~I~N-Gid~~~~~p~~~~~~~~~~~~~~~~~~~~~k~~l~~~~g~~~~~~~~~i~~vGr-l~~~---Kg~~~l 314 (476)
T cd03791 240 ARAGKLSGILN-GIDYDVWNPATDPHLPANYSADDLEGKAENKAALQEELGLPVDPDAPLFGFVGR-LTEQ---KGIDLL 314 (476)
T ss_pred hccCCeEEEeC-CCcCcccCccccchhhhcCCccccccHHHHHHHHHHHcCCCcCCCCCEEEEEee-cccc---ccHHHH
Confidence 23478999995 9988665543221 145678888885 78889999994 5555 999999
Q ss_pred HHHHHHhhhhcccCCCCCCCEEEEEEe-CCCCCchHHHHHHHHHHcCCCCccEEEc-ccc-ccHHHHHHHcCeeEEcccC
Q 002535 357 LRALLPLFSEVSVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHM-AAE-GDVDSVLNTADVVIYGSFL 433 (911)
Q Consensus 357 LeAl~~L~~~~p~~~~~~~~vkLvIVG-G~~~e~Y~~~Le~la~~lgL~~~~V~fl-G~v-~dV~~~L~~ADVfVlPS~~ 433 (911)
++|+..+.++. ++|+|+| |+ ..+.+.++++++++ .+ ++.+. |+. +.+..+|+.||++++||.+
T Consensus 315 i~a~~~l~~~~---------~~lvi~G~g~--~~~~~~~~~~~~~~--~~-~v~~~~~~~~~~~~~~~~~aDv~l~pS~~ 380 (476)
T cd03791 315 LEALPELLELG---------GQLVILGSGD--PEYEEALRELAARY--PG-RVAVLIGYDEALAHLIYAGADFFLMPSRF 380 (476)
T ss_pred HHHHHHHHHcC---------cEEEEEecCC--HHHHHHHHHHHHhC--CC-cEEEEEeCCHHHHHHHHHhCCEEECCCCC
Confidence 99999987642 7999999 73 23556777777755 33 56654 555 4567899999999999999
Q ss_pred CcCCccHHHHHHHHcCCCEEecCCCccccccccCc------cEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 002535 434 EEQTFPEILVKALCFRKPIIAPDLSNIRKYVDDRV------NGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRR 507 (911)
Q Consensus 434 E~qGFplvLLEAMA~G~PVIaTd~gGi~EiV~dg~------nGlLv~~~D~eaLAeaI~~LLsd~~~p~~~~~mg~~ar~ 507 (911)
| +||++++|||+||+|||+++.||++|+|.++. +|++++++|+++++++|.++++.-..++.+.+|++++.+
T Consensus 381 E--~~gl~~lEAma~G~pvI~~~~gg~~e~v~~~~~~~~~~~G~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~ 458 (476)
T cd03791 381 E--PCGLTQMYAMRYGTVPIVRATGGLADTVIDYNEDTGEGTGFVFEGYNADALLAALRRALALYRDPEAWRKLQRNAMA 458 (476)
T ss_pred C--CCcHHHHHHhhCCCCCEECcCCCccceEeCCcCCCCCCCeEEeCCCCHHHHHHHHHHHHHHHcCHHHHHHHHHHHhc
Confidence 8 69999999999999999999999999999988 999999999999999999988631115666677666543
Q ss_pred HHHhcCHHHHHHHHHHHHH
Q 002535 508 SVKNLMALETIEGYAMLLE 526 (911)
Q Consensus 508 ~ae~Fs~e~ia~~y~~Lye 526 (911)
++|+|+.++++|.++|+
T Consensus 459 --~~fsw~~~a~~~~~~y~ 475 (476)
T cd03791 459 --QDFSWDRSAKEYLELYR 475 (476)
T ss_pred --cCCChHHHHHHHHHHHh
Confidence 46999999999999986
No 39
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.97 E-value=7.1e-30 Score=298.41 Aligned_cols=284 Identities=16% Similarity=0.172 Sum_probs=223.5
Q ss_pred cCccEEEEcCcchhHHHHHHhhCCCCCCCEEEEEcCchhhHHHHHHH---------hh-cchhhHhhHHHHHhhcceEEe
Q 002535 214 LNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYA---------SS-GQLELLNDWKKVFNRATVVVF 283 (911)
Q Consensus 214 ~kpDIIhvhs~~~~~~ia~L~~~~~~giPvV~tiH~~~L~~~l~k~~---------~~-~~d~lIs~~~~~~~~a~~vvf 283 (911)
.++|+||+|+....+.++.++.+ ..++|+|+|.|+.....+..... .. +........+..++.++.++.
T Consensus 172 ~~~dviH~~s~~~~g~~~~~~~~-~~~~p~I~t~Hg~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ad~Ii~ 250 (475)
T cd03813 172 PKADVYHAVSTGYAGLLGALAKA-RRGTPFLLTEHGIYTRERKIELLQADWEMSYFRRLWIRFFESLGRLAYQAADRITT 250 (475)
T ss_pred CCCCEEeccCcchHHHHHHHHHH-HhCCCEEEecCCccHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHhCCEEEe
Confidence 48999999987554455555543 66899999999842211110110 00 111111234566778888777
Q ss_pred cCCcc--ccccccCCCCCEEEeCCCCCCcccccccCchhhHHHHHhhCCCCCCeEEEEEEeccccccccccHHHHHHHHH
Q 002535 284 PDYVL--PMMYSAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALL 361 (911)
Q Consensus 284 pn~~l--~ii~~~id~~ki~VIpg~gVD~~~f~~~~~~~k~~lR~~lgi~~d~~vIL~VGsrl~~~KGiKg~dlLLeAl~ 361 (911)
.+... .....+.+.+++.+||| |+|...|.+.... ...++.++|+++| ++.+. ||++.+++|++
T Consensus 251 ~s~~~~~~~~~~g~~~~ki~vIpN-gid~~~f~~~~~~---------~~~~~~~~i~~vG-rl~~~---Kg~~~li~a~~ 316 (475)
T cd03813 251 LYEGNRERQIEDGADPEKIRVIPN-GIDPERFAPARRA---------RPEKEPPVVGLIG-RVVPI---KDIKTFIRAAA 316 (475)
T ss_pred cCHHHHHHHHHcCCCHHHeEEeCC-CcCHHHcCCcccc---------ccCCCCcEEEEEe-ccccc---cCHHHHHHHHH
Confidence 65542 22234556678999995 9988554432211 2345678999999 45454 99999999999
Q ss_pred HhhhhcccCCCCCCCEEEEEEe-CCCCCchHHHHHHHHHHcCCCCccEEEccccccHHHHHHHcCeeEEcccCCcCCccH
Q 002535 362 PLFSEVSVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPE 440 (911)
Q Consensus 362 ~L~~~~p~~~~~~~~vkLvIVG-G~~~e~Y~~~Le~la~~lgL~~~~V~flG~v~dV~~~L~~ADVfVlPS~~E~qGFpl 440 (911)
.+.++.|+ ++++|+| |+..+.|.++++++++++++.+ +|+|+| .+++.++|+.+|++|+||..| |||+
T Consensus 317 ~l~~~~p~-------~~l~IvG~g~~~~~~~~e~~~li~~l~l~~-~V~f~G-~~~v~~~l~~aDv~vlpS~~E--g~p~ 385 (475)
T cd03813 317 IVRKKIPD-------AEGWVIGPTDEDPEYAEECRELVESLGLED-NVKFTG-FQNVKEYLPKLDVLVLTSISE--GQPL 385 (475)
T ss_pred HHHHhCCC-------eEEEEECCCCcChHHHHHHHHHHHHhCCCC-eEEEcC-CccHHHHHHhCCEEEeCchhh--cCCh
Confidence 99988887 9999999 7666678889999999999988 899999 779999999999999999988 7999
Q ss_pred HHHHHHHcCCCEEecCCCcccccccc------CccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH-hcC
Q 002535 441 ILVKALCFRKPIIAPDLSNIRKYVDD------RVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSVK-NLM 513 (911)
Q Consensus 441 vLLEAMA~G~PVIaTd~gGi~EiV~d------g~nGlLv~~~D~eaLAeaI~~LLsd~~~p~~~~~mg~~ar~~ae-~Fs 513 (911)
+++||||||+|||+|+.|+++|++.+ |.+|++++++|+++++++|.++++| ++.+++|+++|++.++ .|+
T Consensus 386 ~vlEAma~G~PVVatd~g~~~elv~~~~~~~~g~~G~lv~~~d~~~la~ai~~ll~~---~~~~~~~~~~a~~~v~~~~s 462 (475)
T cd03813 386 VILEAMAAGIPVVATDVGSCRELIEGADDEALGPAGEVVPPADPEALARAILRLLKD---PELRRAMGEAGRKRVERYYT 462 (475)
T ss_pred HHHHHHHcCCCEEECCCCChHHHhcCCcccccCCceEEECCCCHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999988 6799999999999999999999999 9999999999999995 589
Q ss_pred HHHHHHHHHHHHH
Q 002535 514 ALETIEGYAMLLE 526 (911)
Q Consensus 514 ~e~ia~~y~~Lye 526 (911)
+++++++|.++|+
T Consensus 463 ~~~~~~~y~~lY~ 475 (475)
T cd03813 463 LERMIDSYRRLYL 475 (475)
T ss_pred HHHHHHHHHHHhC
Confidence 9999999999884
No 40
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=99.97 E-value=6.3e-29 Score=269.06 Aligned_cols=352 Identities=20% Similarity=0.245 Sum_probs=254.6
Q ss_pred EEEEEeCCCC--CChHHHHHHHHHHHHHHCCCeEEEEEeCCCcchhhhhhcCceEEE-------------eccchhHHHh
Q 002535 146 QLALVFPDLL--IDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAI-------------LQTGREKASF 210 (911)
Q Consensus 146 rIalI~~~L~--~GGae~~v~~LAk~L~~~GyeV~V~t~~~g~~~~~~~~~gi~v~~-------------l~~~~~l~~l 210 (911)
||+++.+... .||.+..+..+++.|.+.||+|.+++................... ......+...
T Consensus 1 kI~ii~~~~~~~~~G~~~~~~~l~~~L~~~g~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (374)
T cd03801 1 KILLVTPEYPPSVGGAERHVLELARALAARGHEVTVLTPGDGGLPDEEEVGGIVVVRPPPLLRVRRLLLLLLLALRLRRL 80 (374)
T ss_pred CeeEEecccCCccCcHhHHHHHHHHHHHhcCceEEEEecCCCCCCceeeecCcceecCCcccccchhHHHHHHHHHHHHH
Confidence 4667776553 389999999999999999999999998764322111111111100 0111223445
Q ss_pred hhhcCccEEEEcCcchhHHHHHHhhCCCCCCCEEEEEcCchhhHHHHHHHhhcchhhHhhHHHHHhhcceEEecCCcccc
Q 002535 211 VNWLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRATVVVFPDYVLPM 290 (911)
Q Consensus 211 I~~~kpDIIhvhs~~~~~~ia~L~~~~~~giPvV~tiH~~~L~~~l~k~~~~~~d~lIs~~~~~~~~a~~vvfpn~~l~i 290 (911)
+...++|+||+++........ ... ...++|+++++|+......... ...............++.++.+++.+.....
T Consensus 81 ~~~~~~Dii~~~~~~~~~~~~-~~~-~~~~~~~i~~~h~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~d~~i~~s~~~~~ 157 (374)
T cd03801 81 LRRERFDVVHAHDWLALLAAA-LAA-RLLGIPLVLTVHGLEFGRPGNE-LGLLLKLARALERRALRRADRIIAVSEATRE 157 (374)
T ss_pred hhhcCCcEEEEechhHHHHHH-HHH-HhcCCcEEEEeccchhhccccc-hhHHHHHHHHHHHHHHHhCCEEEEecHHHHH
Confidence 666899999999988843322 232 3678999999998433211000 0000001111233445566666666554221
Q ss_pred c-ccc--CCCCCEEEeCCCCCCcccccccCchhhHHHHHhhCCCCCCeEEEEEEeccccccccccHHHHHHHHHHhhhhc
Q 002535 291 M-YSA--FDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEV 367 (911)
Q Consensus 291 i-~~~--id~~ki~VIpg~gVD~~~f~~~~~~~k~~lR~~lgi~~d~~vIL~VGsrl~~~KGiKg~dlLLeAl~~L~~~~ 367 (911)
. ... ....++.++|+ |++...+.... ...+.......+.+.++++|+.. .. ||++.+++|+..+.++.
T Consensus 158 ~~~~~~~~~~~~~~~i~~-~~~~~~~~~~~----~~~~~~~~~~~~~~~i~~~g~~~-~~---k~~~~~i~~~~~~~~~~ 228 (374)
T cd03801 158 ELRELGGVPPEKITVIPN-GVDTERFRPAP----RAARRRLGIPEDEPVILFVGRLV-PR---KGVDLLLEALAKLRKEY 228 (374)
T ss_pred HHHhcCCCCCCcEEEecC-cccccccCccc----hHHHhhcCCcCCCeEEEEecchh-hh---cCHHHHHHHHHHHhhhc
Confidence 1 112 22358889984 77774432211 23344455667788999999544 44 99999999999998877
Q ss_pred ccCCCCCCCEEEEEEe-CCCCCchHHHHHHHHHHcCCCCccEEEcccc--ccHHHHHHHcCeeEEcccCCcCCccHHHHH
Q 002535 368 SVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAAE--GDVDSVLNTADVVIYGSFLEEQTFPEILVK 444 (911)
Q Consensus 368 p~~~~~~~~vkLvIVG-G~~~e~Y~~~Le~la~~lgL~~~~V~flG~v--~dV~~~L~~ADVfVlPS~~E~qGFplvLLE 444 (911)
++ ++++++| ++.. ..+++.+++++..+ +|.+.|++ +++.++|..||++++|+..| |+|++++|
T Consensus 229 ~~-------~~l~i~G~~~~~----~~~~~~~~~~~~~~-~v~~~g~~~~~~~~~~~~~~di~i~~~~~~--~~~~~~~E 294 (374)
T cd03801 229 PD-------VRLVIVGDGPLR----EELEALAAELGLGD-RVTFLGFVPDEDLPALYAAADVFVLPSLYE--GFGLVLLE 294 (374)
T ss_pred CC-------eEEEEEeCcHHH----HHHHHHHHHhCCCc-ceEEEeccChhhHHHHHHhcCEEEecchhc--cccchHHH
Confidence 76 9999999 5443 67778888888887 89999988 89999999999999999987 79999999
Q ss_pred HHHcCCCEEecCCCccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH-HhcCHHHHHHHHHH
Q 002535 445 ALCFRKPIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSV-KNLMALETIEGYAM 523 (911)
Q Consensus 445 AMA~G~PVIaTd~gGi~EiV~dg~nGlLv~~~D~eaLAeaI~~LLsd~~~p~~~~~mg~~ar~~a-e~Fs~e~ia~~y~~ 523 (911)
||++|+|||+++.++..+++.++.+|+++++.|+++++++|.+++++ ++.+.+|++++++.+ ++|+|+++++.+.+
T Consensus 295 a~~~g~pvI~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (374)
T cd03801 295 AMAAGLPVVASDVGGIPEVVEDGETGLLVPPGDPEALAEAILRLLDD---PELRRRLGEAARERVAERFSWDRVAARTEE 371 (374)
T ss_pred HHHcCCcEEEeCCCChhHHhcCCcceEEeCCCCHHHHHHHHHHHHcC---hHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 99999999999999999999989999999999999999999999999 999999999999777 77999999999988
Q ss_pred HHH
Q 002535 524 LLE 526 (911)
Q Consensus 524 Lye 526 (911)
+|+
T Consensus 372 ~~~ 374 (374)
T cd03801 372 VYY 374 (374)
T ss_pred hhC
Confidence 763
No 41
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.97 E-value=4.8e-29 Score=275.23 Aligned_cols=337 Identities=16% Similarity=0.128 Sum_probs=238.9
Q ss_pred EEEEEeCCCC--CChHHHHHHHHHHHHHHCCCeEEEEEeCCCcchhhhhhcCceEEEeccc---------hhHHHh--hh
Q 002535 146 QLALVFPDLL--IDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTG---------REKASF--VN 212 (911)
Q Consensus 146 rIalI~~~L~--~GGae~~v~~LAk~L~~~GyeV~V~t~~~g~~~~~~~~~gi~v~~l~~~---------~~l~~l--I~ 212 (911)
||++|.+... .||.+.++..+++.|.++||+|++++.............+.++..++.. ...... +.
T Consensus 1 kil~i~~~~~p~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (357)
T cd03795 1 RVLHVGKFYPPDRGGIEQVIRDLAEGLAARGIEVAVLCASPEPKGRDEERNGHRVIRAPSLLNVASTPFSPSFFKQLKKL 80 (357)
T ss_pred CeeEecCCCCCCCCcHHHHHHHHHHHHHhCCCceEEEecCCCCcchhhhccCceEEEeecccccccccccHHHHHHHHhc
Confidence 4677776554 6999999999999999999999999986643322222222232222111 111111 34
Q ss_pred hcCccEEEEcCcchhHHHHHHhhCCCCCCCEEEEEcCchhhHHHHHHHhhcchhhHhhHHHHHhhcceEEecCCccccc-
Q 002535 213 WLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRATVVVFPDYVLPMM- 291 (911)
Q Consensus 213 ~~kpDIIhvhs~~~~~~ia~L~~~~~~giPvV~tiH~~~L~~~l~k~~~~~~d~lIs~~~~~~~~a~~vvfpn~~l~ii- 291 (911)
..++|+||+|.+........... ..++|++++.|+........ ..... ......++.++.+++.+......
T Consensus 81 ~~~~Dii~~~~~~~~~~~~~~~~--~~~~~~i~~~h~~~~~~~~~---~~~~~---~~~~~~~~~~d~vi~~s~~~~~~~ 152 (357)
T cd03795 81 AKKADVIHLHFPNPLADLALLLL--PRKKPVVVHWHSDIVKQKLL---LKLYR---PLQRRFLRRADAIVATSPNYAETS 152 (357)
T ss_pred CCCCCEEEEecCcchHHHHHHHh--ccCceEEEEEcChhhccchh---hhhhh---HHHHHHHHhcCEEEeCcHHHHHHH
Confidence 57899999998776433333332 25789999999743322110 00000 11233456667666665542221
Q ss_pred cc-cCCCCCEEEeCCCCCCcccccccCchhhHHHHHhhCCCCCCeEEEEEEeccccccccccHHHHHHHHHHhhhhcccC
Q 002535 292 YS-AFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVE 370 (911)
Q Consensus 292 ~~-~id~~ki~VIpg~gVD~~~f~~~~~~~k~~lR~~lgi~~d~~vIL~VGsrl~~~KGiKg~dlLLeAl~~L~~~~p~~ 370 (911)
.. .....++.++|+ |+|...+...... .. .....+.++++++++|+ +.+. ||++.+++|+.++. +
T Consensus 153 ~~~~~~~~~~~~i~~-gi~~~~~~~~~~~-~~---~~~~~~~~~~~i~~~G~-~~~~---K~~~~li~a~~~l~----~- 218 (357)
T cd03795 153 PVLRRFRDKVRVIPL-GLDPARYPRPDAL-EE---AIWRRAAGRPFFLFVGR-LVYY---KGLDVLLEAAAALP----D- 218 (357)
T ss_pred HHhcCCccceEEecC-CCChhhcCCcchh-hh---HhhcCCCCCcEEEEecc-cccc---cCHHHHHHHHHhcc----C-
Confidence 11 111267888884 8887443321110 11 22344567789999994 5554 99999999999886 3
Q ss_pred CCCCCCEEEEEEe-CCCCCchHHHHHHHHHHcCCCCccEEEcccc--ccHHHHHHHcCeeEEcccCCcCCccHHHHHHHH
Q 002535 371 NESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAAE--GDVDSVLNTADVVIYGSFLEEQTFPEILVKALC 447 (911)
Q Consensus 371 ~~~~~~vkLvIVG-G~~~e~Y~~~Le~la~~lgL~~~~V~flG~v--~dV~~~L~~ADVfVlPS~~E~qGFplvLLEAMA 447 (911)
++++|+| |+.. ..+++.++++++.+ +|+|+|++ +++.++|+.||++++||....+|||++++|||+
T Consensus 219 ------~~l~i~G~g~~~----~~~~~~~~~~~~~~-~V~~~g~v~~~~~~~~~~~ad~~i~ps~~~~e~~g~~~~Ea~~ 287 (357)
T cd03795 219 ------APLVIVGEGPLE----AELEALAAALGLLD-RVRFLGRLDDEEKAALLAACDVFVFPSVERSEAFGIVLLEAMA 287 (357)
T ss_pred ------cEEEEEeCChhH----HHHHHHHHhcCCcc-eEEEcCCCCHHHHHHHHHhCCEEEeCCcccccccchHHHHHHH
Confidence 8999999 7654 77888888888887 89999987 568999999999999996422289999999999
Q ss_pred cCCCEEecCCCcccccccc-CccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH-HhcCHHHHH
Q 002535 448 FRKPIIAPDLSNIRKYVDD-RVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSV-KNLMALETI 518 (911)
Q Consensus 448 ~G~PVIaTd~gGi~EiV~d-g~nGlLv~~~D~eaLAeaI~~LLsd~~~p~~~~~mg~~ar~~a-e~Fs~e~ia 518 (911)
+|+|||+++.++..+.+.+ +.+|++++++|+++++++|.++++| ++.+++|++++++.+ ++|+++.++
T Consensus 288 ~g~Pvi~~~~~~~~~~i~~~~~~g~~~~~~d~~~~~~~i~~l~~~---~~~~~~~~~~~~~~~~~~~s~~~~~ 357 (357)
T cd03795 288 FGKPVISTEIGTGGSYVNLHGVTGLVVPPGDPAALAEAIRRLLED---PELRERLGEAARERAEEEFTADRMV 357 (357)
T ss_pred cCCCEEecCCCCchhHHhhCCCceEEeCCCCHHHHHHHHHHHHHC---HHHHHHHHHHHHHHHHHhcchHhhC
Confidence 9999999999999998886 8899999999999999999999999 999999999999999 669998763
No 42
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=99.97 E-value=4.3e-29 Score=269.85 Aligned_cols=332 Identities=20% Similarity=0.255 Sum_probs=242.2
Q ss_pred EEEEEeCCCCCChHHHHHHHHHHHHHHCCCeEEEEEeCCCcchhhhhhcC---ce--------EEEeccchhHHHhhhhc
Q 002535 146 QLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIG---VP--------VAILQTGREKASFVNWL 214 (911)
Q Consensus 146 rIalI~~~L~~GGae~~v~~LAk~L~~~GyeV~V~t~~~g~~~~~~~~~g---i~--------v~~l~~~~~l~~lI~~~ 214 (911)
||+++++....||.+..+..++++|.+.||+|.+++.............. .. .........+...++..
T Consensus 1 kIl~~~~~~~~gG~~~~~~~l~~~l~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (353)
T cd03811 1 KILFVIPSLGGGGAERVLLNLANGLDKRGYDVTLVVLRDEGDYLELLPSNVKLIPVRVLKLKSLRDLLAILRLRRLLRKE 80 (353)
T ss_pred CeEEEeecccCCCcchhHHHHHHHHHhcCceEEEEEcCCCCccccccccchhhhceeeeecccccchhHHHHHHHHHHhc
Confidence 57899999989999999999999999999999999986543221111110 00 11111223456667778
Q ss_pred CccEEEEcCc-chhHHHHHHhhCCCCCCCEEEEEcCchhhHHHHHHHhhcchhhHhhHHHHHhhcceEEecCCccccc-c
Q 002535 215 NYDGILVNSL-EAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRATVVVFPDYVLPMM-Y 292 (911)
Q Consensus 215 kpDIIhvhs~-~~~~~ia~L~~~~~~giPvV~tiH~~~L~~~l~k~~~~~~d~lIs~~~~~~~~a~~vvfpn~~l~ii-~ 292 (911)
+||+||+++. .. ..+..+... . ++|+|+++|+............. ......+..++.+++.+...... .
T Consensus 81 ~~dii~~~~~~~~-~~~~~~~~~-~-~~~~i~~~~~~~~~~~~~~~~~~------~~~~~~~~~~d~ii~~s~~~~~~~~ 151 (353)
T cd03811 81 KPDVVISHLTTTP-NVLALLAAR-L-GTKLIVWEHNSLSLELKRKLRLL------LLIRKLYRRADKIVAVSEGVKEDLL 151 (353)
T ss_pred CCCEEEEcCccch-hHHHHHHhh-c-CCceEEEEcCcchhhhccchhHH------HHHHhhccccceEEEeccchhhhHH
Confidence 9999999998 33 233333322 3 78999999974332111000000 22344556667666665552221 1
Q ss_pred c--cCCCCCEEEeCCCCCCcccccccCchhhHHHHHhhCCCCCCeEEEEEEeccccccccccHHHHHHHHHHhhhhcccC
Q 002535 293 S--AFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVE 370 (911)
Q Consensus 293 ~--~id~~ki~VIpg~gVD~~~f~~~~~~~k~~lR~~lgi~~d~~vIL~VGsrl~~~KGiKg~dlLLeAl~~L~~~~p~~ 370 (911)
. .....++.++|+ |+|...+...... .. .++...+.++++++|+ +... ||++.+++|+..+.+++++
T Consensus 152 ~~~~~~~~~~~vi~~-~~~~~~~~~~~~~---~~--~~~~~~~~~~i~~~g~-~~~~---k~~~~~i~~~~~l~~~~~~- 220 (353)
T cd03811 152 KLLGIPPDKIEVIYN-PIDIEEIRALAEE---PL--ELGIPPDGPVILAVGR-LSPQ---KGFDTLIRAFALLRKEGPD- 220 (353)
T ss_pred HhhcCCccccEEecC-CcChhhcCcccch---hh--hcCCCCCceEEEEEec-chhh---cChHHHHHHHHHhhhcCCC-
Confidence 1 222578889994 7877443322211 10 3455677889999995 4454 9999999999999887666
Q ss_pred CCCCCCEEEEEEe-CCCCCchHHHHHHHHHHcCCCCccEEEccccccHHHHHHHcCeeEEcccCCcCCccHHHHHHHHcC
Q 002535 371 NESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFR 449 (911)
Q Consensus 371 ~~~~~~vkLvIVG-G~~~e~Y~~~Le~la~~lgL~~~~V~flG~v~dV~~~L~~ADVfVlPS~~E~qGFplvLLEAMA~G 449 (911)
++|+++| |+.. ..+++.++++++.+ +|.+.|+.+++.++|+.||++|+||..| |+|++++|||++|
T Consensus 221 ------~~l~i~G~~~~~----~~~~~~~~~~~~~~-~v~~~g~~~~~~~~~~~~d~~i~ps~~e--~~~~~~~Ea~~~G 287 (353)
T cd03811 221 ------ARLVILGDGPLR----EELEALAKELGLAD-RVHFLGFQSNPYPYLKAADLFVLSSRYE--GFPNVLLEAMALG 287 (353)
T ss_pred ------ceEEEEcCCccH----HHHHHHHHhcCCCc-cEEEecccCCHHHHHHhCCEEEeCcccC--CCCcHHHHHHHhC
Confidence 9999999 6655 67778889899887 8999999999999999999999999998 7999999999999
Q ss_pred CCEEecCCCccccccccCccEEEEcCCCHHHH---HHHHHHHHHcCCCcHHHHHHHHHHHHHH-HhcC
Q 002535 450 KPIIAPDLSNIRKYVDDRVNGYLFPKENIKAL---THIILQVITNGKISPFARNIASIGRRSV-KNLM 513 (911)
Q Consensus 450 ~PVIaTd~gGi~EiV~dg~nGlLv~~~D~eaL---AeaI~~LLsd~~~p~~~~~mg~~ar~~a-e~Fs 513 (911)
+|||+++.++..|++.++.+|++++++|++++ +++|..+.++ ++.+.++++++++.+ ++|+
T Consensus 288 ~PvI~~~~~~~~e~i~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~---~~~~~~~~~~~~~~~~~~~~ 352 (353)
T cd03811 288 TPVVATDCPGPREILEDGENGLLVPVGDEAALAAAALALLDLLLD---PELRERLAAAARERVAREYS 352 (353)
T ss_pred CCEEEcCCCChHHHhcCCCceEEECCCCHHHHHHHHHHHHhccCC---hHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999 6777777777 888888999777776 5565
No 43
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=99.97 E-value=4.2e-29 Score=275.44 Aligned_cols=331 Identities=19% Similarity=0.223 Sum_probs=244.5
Q ss_pred EEEEEeCCCCCChHHHHHHHHHHHHHHCCCeEEEEEeCCCcchhhh---hhcCceEEEe-------ccchhHHHhhhhcC
Q 002535 146 QLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVW---RNIGVPVAIL-------QTGREKASFVNWLN 215 (911)
Q Consensus 146 rIalI~~~L~~GGae~~v~~LAk~L~~~GyeV~V~t~~~g~~~~~~---~~~gi~v~~l-------~~~~~l~~lI~~~k 215 (911)
||+++.+.+..+ .+..+.++++.|.++||+|.+++.......... ......+... .....+...++..+
T Consensus 1 ki~~~~~~~~~~-~~~~~~~~~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (355)
T cd03799 1 KIAYLVKEFPRL-SETFILREILALEAAGHEVEIFSLRPPEDTLVHPEDRAELARTRYLARSLALLAQALVLARELRRLG 79 (355)
T ss_pred CEEEECCCCCCc-chHHHHHHHHHHHhCCCeEEEEEecCcccccccccccccccchHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 578888887555 889999999999999999999998654321110 0111111100 01112233345579
Q ss_pred ccEEEEcCcchhHHHHHHhhCCCCCCCEEEEEcCchhhHHHHHHHhhcchhhHhhHHHHHhhcceEEecCCcccccc-c-
Q 002535 216 YDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRATVVVFPDYVLPMMY-S- 293 (911)
Q Consensus 216 pDIIhvhs~~~~~~ia~L~~~~~~giPvV~tiH~~~L~~~l~k~~~~~~d~lIs~~~~~~~~a~~vvfpn~~l~ii~-~- 293 (911)
+|+||+|.......+..+..+ ..++|++++.|+......... ......+..++.+++++....... .
T Consensus 80 ~Dii~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~vi~~s~~~~~~l~~~ 148 (355)
T cd03799 80 IDHIHAHFGTTPATVAMLASR-LGGIPYSFTAHGKDIFRSPDA----------IDLDEKLARADFVVAISEYNRQQLIRL 148 (355)
T ss_pred CCEEEECCCCchHHHHHHHHH-hcCCCEEEEEecccccccCch----------HHHHHHHhhCCEEEECCHHHHHHHHHh
Confidence 999999987653344444433 457999999997433211000 122334455666666555422111 1
Q ss_pred -cCCCCCEEEeCCCCCCcccccccCchhhHHHHHhhCCCCCCeEEEEEEeccccccccccHHHHHHHHHHhhhhcccCCC
Q 002535 294 -AFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENE 372 (911)
Q Consensus 294 -~id~~ki~VIpg~gVD~~~f~~~~~~~k~~lR~~lgi~~d~~vIL~VGsrl~~~KGiKg~dlLLeAl~~L~~~~p~~~~ 372 (911)
+....++.++|+ ++|...+.... .....+++.++++|+ +.+. ||++.+++++..+.++.++
T Consensus 149 ~~~~~~~~~vi~~-~~d~~~~~~~~----------~~~~~~~~~i~~~g~-~~~~---k~~~~l~~~~~~l~~~~~~--- 210 (355)
T cd03799 149 LGCDPDKIHVVHC-GVDLERFPPRP----------PPPPGEPLRILSVGR-LVEK---KGLDYLLEALALLKDRGID--- 210 (355)
T ss_pred cCCCcccEEEEeC-CcCHHHcCCcc----------ccccCCCeEEEEEee-eccc---cCHHHHHHHHHHHhhcCCC---
Confidence 355678899995 88874333221 112345678999995 4554 9999999999999877666
Q ss_pred CCCCEEEEEEe-CCCCCchHHHHHHHHHHcCCCCccEEEcccc--ccHHHHHHHcCeeEEcccC------CcCCccHHHH
Q 002535 373 SNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAAE--GDVDSVLNTADVVIYGSFL------EEQTFPEILV 443 (911)
Q Consensus 373 ~~~~vkLvIVG-G~~~e~Y~~~Le~la~~lgL~~~~V~flG~v--~dV~~~L~~ADVfVlPS~~------E~qGFplvLL 443 (911)
++++++| |+.. ..+++.++++++.+ +|.+.|+. +++..+|+.||++++||.. | |||++++
T Consensus 211 ----~~l~i~G~~~~~----~~~~~~~~~~~~~~-~v~~~g~~~~~~l~~~~~~adi~l~~s~~~~~~~~e--~~~~~~~ 279 (355)
T cd03799 211 ----FRLDIVGDGPLR----DELEALIAELGLED-RVTLLGAKSQEEVRELLRAADLFVLPSVTAADGDRE--GLPVVLM 279 (355)
T ss_pred ----eEEEEEECCccH----HHHHHHHHHcCCCC-eEEECCcCChHHHHHHHHhCCEEEecceecCCCCcc--CccHHHH
Confidence 9999999 7665 77888888888887 89999988 7899999999999999988 7 7999999
Q ss_pred HHHHcCCCEEecCCCccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH-HhcCHHHHHHH
Q 002535 444 KALCFRKPIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSV-KNLMALETIEG 520 (911)
Q Consensus 444 EAMA~G~PVIaTd~gGi~EiV~dg~nGlLv~~~D~eaLAeaI~~LLsd~~~p~~~~~mg~~ar~~a-e~Fs~e~ia~~ 520 (911)
|||++|+|||+++.++.++++.++.+|++++++|+++++++|.+++++ ++.+.+|++++++.+ ++|+|+..+++
T Consensus 280 Ea~a~G~Pvi~~~~~~~~~~i~~~~~g~~~~~~~~~~l~~~i~~~~~~---~~~~~~~~~~a~~~~~~~~s~~~~~~~ 354 (355)
T cd03799 280 EAMAMGLPVISTDVSGIPELVEDGETGLLVPPGDPEALADAIERLLDD---PELRREMGEAGRARVEEEFDIRKQAAR 354 (355)
T ss_pred HHHHcCCCEEecCCCCcchhhhCCCceEEeCCCCHHHHHHHHHHHHhC---HHHHHHHHHHHHHHHHHhcCHHHHhhc
Confidence 999999999999999999999999899999999999999999999999 999999999999999 66999998764
No 44
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=99.97 E-value=5.6e-29 Score=273.04 Aligned_cols=314 Identities=13% Similarity=0.112 Sum_probs=220.0
Q ss_pred CEEEEEeCCC------CCChHHHHHHHHHHHHHHCCCeEEEEEeCCCcchhhhhhcCceE----------EEeccchhHH
Q 002535 145 PQLALVFPDL------LIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPV----------AILQTGREKA 208 (911)
Q Consensus 145 prIalI~~~L------~~GGae~~v~~LAk~L~~~GyeV~V~t~~~g~~~~~~~~~gi~v----------~~l~~~~~l~ 208 (911)
+||++|.+.. ..||+++.+..+++.|.+.||+|.+++................. ........+.
T Consensus 1 MkI~~i~~~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (335)
T cd03802 1 MRIALVAPPREPVPPPAYGGTERVVAALTEGLVARGHEVTLFASGDSKTAAPLVPVVPEPLRLDAPGRDRAEAEALALAE 80 (335)
T ss_pred CeEEEEcCCcccCCCcccCcHHHHHHHHHHHHHhcCceEEEEecCCCCcccceeeccCCCcccccchhhHhhHHHHHHHH
Confidence 4789988876 78999999999999999999999999986643211111110000 0011122345
Q ss_pred HhhhhcCccEEEEcCcchhHHHHHHhhCCCCCCCEEEEEcCchhhHHHHHHHhhcchhhHhhHHHHHhhcceEEecCCcc
Q 002535 209 SFVNWLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRATVVVFPDYVL 288 (911)
Q Consensus 209 ~lI~~~kpDIIhvhs~~~~~~ia~L~~~~~~giPvV~tiH~~~L~~~l~k~~~~~~d~lIs~~~~~~~~a~~vvfpn~~l 288 (911)
..++..+||+||+|+.... .+ + .+..++|+|++.|+......... .......+.++..+...
T Consensus 81 ~~~~~~~~Divh~~~~~~~-~~--~--~~~~~~~~v~~~h~~~~~~~~~~-------------~~~~~~~~~~~~~s~~~ 142 (335)
T cd03802 81 RALAAGDFDIVHNHSLHLP-LP--F--ARPLPVPVVTTLHGPPDPELLKL-------------YYAARPDVPFVSISDAQ 142 (335)
T ss_pred HHHhcCCCCEEEecCcccc-hh--h--hcccCCCEEEEecCCCCcccchH-------------HHhhCcCCeEEEecHHH
Confidence 5677789999999998874 32 2 23567899999998543211110 01111222233332221
Q ss_pred ccccccCCCCCEEEeCCCCCCcccccccCchhhHHHHHhhCCCCCCeEEEEEEeccccccccccHHHHHHHHHHhhhhcc
Q 002535 289 PMMYSAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVS 368 (911)
Q Consensus 289 ~ii~~~id~~ki~VIpg~gVD~~~f~~~~~~~k~~lR~~lgi~~d~~vIL~VGsrl~~~KGiKg~dlLLeAl~~L~~~~p 368 (911)
....... .++.+||+ |+|...|.+. +.++..++++| ++.+. ||++.++++++..
T Consensus 143 ~~~~~~~--~~~~vi~n-gvd~~~~~~~--------------~~~~~~i~~~G-r~~~~---Kg~~~li~~~~~~----- 196 (335)
T cd03802 143 RRPWPPL--PWVATVHN-GIDLDDYPFR--------------GPKGDYLLFLG-RISPE---KGPHLAIRAARRA----- 196 (335)
T ss_pred Hhhcccc--cccEEecC-CcChhhCCCC--------------CCCCCEEEEEE-eeccc---cCHHHHHHHHHhc-----
Confidence 1111111 67889994 8888544331 12345899999 55665 9999999997642
Q ss_pred cCCCCCCCEEEEEEe-CCCCCchHHHHHHHHHHcC-CCCccEEEcccc--ccHHHHHHHcCeeEEcccCCcCCccHHHHH
Q 002535 369 VENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLH-YPLGVVKHMAAE--GDVDSVLNTADVVIYGSFLEEQTFPEILVK 444 (911)
Q Consensus 369 ~~~~~~~~vkLvIVG-G~~~e~Y~~~Le~la~~lg-L~~~~V~flG~v--~dV~~~L~~ADVfVlPS~~E~qGFplvLLE 444 (911)
+ ++++|+| |+.. ..+....++.. +.+ +|+|+|++ .++.++|+.+|++++||...+ |||++++|
T Consensus 197 ~-------~~l~i~G~~~~~----~~~~~~~~~~~~~~~-~v~~~G~~~~~~~~~~~~~~d~~v~ps~~~E-~~~~~~lE 263 (335)
T cd03802 197 G-------IPLKLAGPVSDP----DYFYREIAPELLDGP-DIEYLGEVGGAEKAELLGNARALLFPILWEE-PFGLVMIE 263 (335)
T ss_pred C-------CeEEEEeCCCCH----HHHHHHHHHhcccCC-cEEEeCCCCHHHHHHHHHhCcEEEeCCcccC-CcchHHHH
Confidence 3 8999999 7554 34444444333 455 79999987 567899999999999997533 79999999
Q ss_pred HHHcCCCEEecCCCccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH-HhcCHHHHHHHHHH
Q 002535 445 ALCFRKPIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSV-KNLMALETIEGYAM 523 (911)
Q Consensus 445 AMA~G~PVIaTd~gGi~EiV~dg~nGlLv~~~D~eaLAeaI~~LLsd~~~p~~~~~mg~~ar~~a-e~Fs~e~ia~~y~~ 523 (911)
|||||+|||+++.||.+|++.++.+|+++++ +++++++|.++.+. +. +++++.+ ++|+++.++++|.+
T Consensus 264 Ama~G~PvI~~~~~~~~e~i~~~~~g~l~~~--~~~l~~~l~~l~~~---~~------~~~~~~~~~~~s~~~~~~~~~~ 332 (335)
T cd03802 264 AMACGTPVIAFRRGAVPEVVEDGVTGFLVDS--VEELAAAVARADRL---DR------AACRRRAERRFSAARMVDDYLA 332 (335)
T ss_pred HHhcCCCEEEeCCCCchhheeCCCcEEEeCC--HHHHHHHHHHHhcc---HH------HHHHHHHHHhCCHHHHHHHHHH
Confidence 9999999999999999999999999999985 99999999998765 32 3456666 77999999999999
Q ss_pred HHH
Q 002535 524 LLE 526 (911)
Q Consensus 524 Lye 526 (911)
+|+
T Consensus 333 ~y~ 335 (335)
T cd03802 333 LYR 335 (335)
T ss_pred HhC
Confidence 884
No 45
>PLN00142 sucrose synthase
Probab=99.97 E-value=5.8e-29 Score=299.27 Aligned_cols=353 Identities=11% Similarity=0.079 Sum_probs=237.8
Q ss_pred CCCCChHHHHHHHHH--------HHHHHCCCeEE----EEEeCCCcc-----hhhhhh----cCceEEEeccch------
Q 002535 153 DLLIDPQQLQMVTIA--------IALREIGYAIQ----VYSLEDGRA-----HEVWRN----IGVPVAILQTGR------ 205 (911)
Q Consensus 153 ~L~~GGae~~v~~LA--------k~L~~~GyeV~----V~t~~~g~~-----~~~~~~----~gi~v~~l~~~~------ 205 (911)
....||+..++..+| +.|+++|++|+ |+|....+. ....+. -++.+..+++..
T Consensus 299 ~~DtGGQ~vYVl~~aral~~el~~~l~~~G~~v~~~v~i~TR~i~~~~~~~~~~~~e~v~~~~~~~I~rvP~g~~~~~l~ 378 (815)
T PLN00142 299 LPDTGGQVVYILDQVRALENEMLLRIKQQGLDIKPQILIVTRLIPDAKGTTCNQRLEKVSGTEHSHILRVPFRTEKGILR 378 (815)
T ss_pred CCCCCCceehHHHHHHHHHHHHHHHHHhcCCCccceeEEEEeccCCccCCcccCcceeccCCCceEEEecCCCCCccccc
Confidence 345789888887655 67788999774 887643221 111111 133343333321
Q ss_pred -----------------hHHHhh-hh--cCccEEEEcCcchhHHHHHHhhCCCCCCCEEEEEcCch--------h-----
Q 002535 206 -----------------EKASFV-NW--LNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGT--------L----- 252 (911)
Q Consensus 206 -----------------~l~~lI-~~--~kpDIIhvhs~~~~~~ia~L~~~~~~giPvV~tiH~~~--------L----- 252 (911)
.+...+ .. ..||+||.|.+.++ .++.++.+ ..++|.|.|.|.-. .
T Consensus 379 ~~i~ke~l~p~L~~f~~~~~~~~~~~~~~~PDlIHaHYwdsg-~vA~~La~-~lgVP~v~T~HsL~k~K~~~~~~~~~~~ 456 (815)
T PLN00142 379 KWISRFDVWPYLETFAEDAASEILAELQGKPDLIIGNYSDGN-LVASLLAH-KLGVTQCTIAHALEKTKYPDSDIYWKKF 456 (815)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEECCccHH-HHHHHHHH-HhCCCEEEEcccchhhhccccCCccccc
Confidence 011111 11 35999999998884 66666654 67899999999410 0
Q ss_pred --hHH------HHHHHhhcchhhHhhHHHHHhhc-ceEE-ecC---Cc---cccccccCC--CCCEEEeCCCCCCccccc
Q 002535 253 --ATR------ARNYASSGQLELLNDWKKVFNRA-TVVV-FPD---YV---LPMMYSAFD--AGNYYVIPGSPAKAWEAD 314 (911)
Q Consensus 253 --~~~------l~k~~~~~~d~lIs~~~~~~~~a-~~vv-fpn---~~---l~ii~~~id--~~ki~VIpg~gVD~~~f~ 314 (911)
.++ .+......++.+++......... +.+. +.+ .. +..+.++++ ..++.+|| +|+|...|.
T Consensus 457 e~~y~~~~r~~aE~~a~~~Ad~IIasT~qEi~g~~~~i~qy~sh~~f~~p~L~rvv~GId~~~~ki~VVp-pGvD~~~F~ 535 (815)
T PLN00142 457 DDKYHFSCQFTADLIAMNHADFIITSTYQEIAGSKDTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVS-PGADMSIYF 535 (815)
T ss_pred chhhhhhhchHHHHHHHHhhhHHHhCcHHHHhcccchhhhhhcccccccchhhhhhccccccccCeeEEC-CCCChhhcC
Confidence 001 12233334444443221111000 0000 000 00 112223442 45888998 599997776
Q ss_pred ccCchh-h---------------HHHHHhhCC--CCCCeEEEEEEeccccccccccHHHHHHHHHHhhhhcccCCCCCCC
Q 002535 315 TNMDLY-N---------------DTVRVKMGF--KPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSP 376 (911)
Q Consensus 315 ~~~~~~-k---------------~~lR~~lgi--~~d~~vIL~VGsrl~~~KGiKg~dlLLeAl~~L~~~~p~~~~~~~~ 376 (911)
++.... + ...++.+++ ++++++|+++| ++.+. ||++.+++|+..+.+..++
T Consensus 536 P~~~~~~rl~~l~n~I~~~l~~~~~~~e~lg~l~~~~kpvIl~VG-RL~~~---KGid~LIeA~a~l~~l~~~------- 604 (815)
T PLN00142 536 PYTEKQKRLTSLHPSIEELLYSPEQNDEHIGYLKDRKKPIIFSMA-RLDRV---KNLTGLVEWYGKNKRLREL------- 604 (815)
T ss_pred CCChHHhhHHhhcccchhhcCChHHHHHHhCCccCCCCcEEEEEe-cCccc---CCHHHHHHHHHHHHHhCCC-------
Confidence 665332 1 112345665 45677999999 55555 9999999999988765555
Q ss_pred EEEEEEeCC-CC--Cc------hHHHHHHHHHHcCCCCccEEEcccc------ccHHHHHH-HcCeeEEcccCCcCCccH
Q 002535 377 IKVMILSGD-ST--SN------YSVVIEAIAHNLHYPLGVVKHMAAE------GDVDSVLN-TADVVIYGSFLEEQTFPE 440 (911)
Q Consensus 377 vkLvIVGG~-~~--e~------Y~~~Le~la~~lgL~~~~V~flG~v------~dV~~~L~-~ADVfVlPS~~E~qGFpl 440 (911)
++|+|+||. .. .. ....++++++++++.+ +|.|+|.. .++..+++ ++|+||+||.+| |||+
T Consensus 605 ~~LVIVGgg~d~~~s~d~ee~~el~~L~~La~~lgL~~-~V~flG~~~~~~~~~eLyr~iadaaDVfVlPS~~E--gFGL 681 (815)
T PLN00142 605 VNLVVVGGFIDPSKSKDREEIAEIKKMHSLIEKYNLKG-QFRWIAAQTNRVRNGELYRYIADTKGAFVQPALYE--AFGL 681 (815)
T ss_pred cEEEEEECCccccccccHHHHHHHHHHHHHHHHcCCCC-cEEEcCCcCCcccHHHHHHHHHhhCCEEEeCCccc--CCCH
Confidence 899999942 11 11 1234778899999998 99999854 34556666 479999999999 7999
Q ss_pred HHHHHHHcCCCEEecCCCccccccccCccEEEEcCCCHHHHHHHHHHHH----HcCCCcHHHHHHHHHHHHHH-HhcCHH
Q 002535 441 ILVKALCFRKPIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVI----TNGKISPFARNIASIGRRSV-KNLMAL 515 (911)
Q Consensus 441 vLLEAMA~G~PVIaTd~gGi~EiV~dg~nGlLv~~~D~eaLAeaI~~LL----sd~~~p~~~~~mg~~ar~~a-e~Fs~e 515 (911)
+++||||||+|||+|+.||++|+|.||.+|++++++|+++++++|.+++ +| ++.+++|+++|++.+ ++|+|+
T Consensus 682 vvLEAMA~GlPVVATdvGG~~EIV~dG~tG~LV~P~D~eaLA~aI~~lLekLl~D---p~lr~~mg~~Ar~rv~e~FSWe 758 (815)
T PLN00142 682 TVVEAMTCGLPTFATCQGGPAEIIVDGVSGFHIDPYHGDEAANKIADFFEKCKED---PSYWNKISDAGLQRIYECYTWK 758 (815)
T ss_pred HHHHHHHcCCCEEEcCCCCHHHHhcCCCcEEEeCCCCHHHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHHhCCHH
Confidence 9999999999999999999999999999999999999999999997654 68 899999999999999 779999
Q ss_pred HHHHHHHHHH
Q 002535 516 ETIEGYAMLL 525 (911)
Q Consensus 516 ~ia~~y~~Ly 525 (911)
.+++++.++.
T Consensus 759 ~~A~rll~L~ 768 (815)
T PLN00142 759 IYAERLLTLG 768 (815)
T ss_pred HHHHHHHHHH
Confidence 9999998876
No 46
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.97 E-value=1.4e-28 Score=272.48 Aligned_cols=340 Identities=13% Similarity=0.125 Sum_probs=231.6
Q ss_pred EEEEEeCC---CCCChHHHHHHHHHHHHHHCCCeEEEEEeCCCcchhhhhhcCceEEEeccch---------hHHHh---
Q 002535 146 QLALVFPD---LLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGR---------EKASF--- 210 (911)
Q Consensus 146 rIalI~~~---L~~GGae~~v~~LAk~L~~~GyeV~V~t~~~g~~~~~~~~~gi~v~~l~~~~---------~l~~l--- 210 (911)
||++|... -..||++.++.++++.|.++||+|.|++.............++++..++... .+..+
T Consensus 1 ~i~~i~~~~~~~~~gG~~~~~~~la~~L~~~g~~v~v~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (363)
T cd04955 1 KIAIIGTRGIPAKYGGFETFVEELAPRLVARGHEVTVYCRSPYPKQKETEYNGVRLIHIPAPEIGGLGTIIYDILAILHA 80 (363)
T ss_pred CeEEEecCcCCcccCcHHHHHHHHHHHHHhcCCCEEEEEccCCCCCcccccCCceEEEcCCCCccchhhhHHHHHHHHHH
Confidence 46777553 2579999999999999999999999999865433222233455555544321 01111
Q ss_pred h-hhcCccEEEEcCcchhHHHHHHhhCCCCCCCEEEEEcCchhhHHHHHHHhhcchhhH-hhHHHHHhhcceEEecCCcc
Q 002535 211 V-NWLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELL-NDWKKVFNRATVVVFPDYVL 288 (911)
Q Consensus 211 I-~~~kpDIIhvhs~~~~~~ia~L~~~~~~giPvV~tiH~~~L~~~l~k~~~~~~d~lI-s~~~~~~~~a~~vvfpn~~l 288 (911)
+ ...++|+||...+... ....++. ..++|++++.|+..+... .+ ......+. ......++.++.+++.+...
T Consensus 81 ~~~~~~~~~i~~~~~~~~-~~~~~~~--~~~~~~v~~~h~~~~~~~--~~-~~~~~~~~~~~~~~~~~~ad~ii~~s~~~ 154 (363)
T cd04955 81 LFVKRDIDHVHALGPAIA-PFLPLLR--LKGKKVVVNMDGLEWKRA--KW-GRPAKRYLKFGEKLAVKFADRLIADSPGI 154 (363)
T ss_pred HhccCCeEEEEecCccHH-HHHHHHH--hcCCCEEEEccCcceeec--cc-ccchhHHHHHHHHHHHhhccEEEeCCHHH
Confidence 1 1234555555444431 2233332 347899999997432210 00 00000111 11233445667676666552
Q ss_pred cccc-ccCCCCCEEEeCCCCCCcccccccCchhhHHHHHhhCCCCCCeEEEEEEeccccccccccHHHHHHHHHHhhhhc
Q 002535 289 PMMY-SAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEV 367 (911)
Q Consensus 289 ~ii~-~~id~~ki~VIpg~gVD~~~f~~~~~~~k~~lR~~lgi~~d~~vIL~VGsrl~~~KGiKg~dlLLeAl~~L~~~~ 367 (911)
.... ....... .+||+ |+|...+.. ....++..+++++. .++++|+ +.+. ||++.+++|+..+..
T Consensus 155 ~~~~~~~~~~~~-~~i~n-gv~~~~~~~-----~~~~~~~~~~~~~~-~i~~~G~-~~~~---Kg~~~li~a~~~l~~-- 220 (363)
T cd04955 155 KEYLKEKYGRDS-TYIPY-GADHVVSSE-----EDEILKKYGLEPGR-YYLLVGR-IVPE---NNIDDLIEAFSKSNS-- 220 (363)
T ss_pred HHHHHHhcCCCC-eeeCC-CcChhhcch-----hhhhHHhcCCCCCc-EEEEEec-cccc---CCHHHHHHHHHhhcc--
Confidence 2211 2222223 78884 888743221 12334455665554 6789995 5554 999999999998764
Q ss_pred ccCCCCCCCEEEEEEe-CCCCCchHHHHHHHHHHcCCCCccEEEcccc--ccHHHHHHHcCeeEEcccC-CcCCccHHHH
Q 002535 368 SVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAAE--GDVDSVLNTADVVIYGSFL-EEQTFPEILV 443 (911)
Q Consensus 368 p~~~~~~~~vkLvIVG-G~~~e~Y~~~Le~la~~lgL~~~~V~flG~v--~dV~~~L~~ADVfVlPS~~-E~qGFplvLL 443 (911)
+ ++|+++| |+....+... +.+.+++.+ +|+++|++ +++..+|.+||++++||.. | |||++++
T Consensus 221 -~-------~~l~ivG~~~~~~~~~~~---~~~~~~~~~-~V~~~g~~~~~~~~~~~~~ad~~v~ps~~~e--~~~~~~~ 286 (363)
T cd04955 221 -G-------KKLVIVGNADHNTPYGKL---LKEKAAADP-RIIFVGPIYDQELLELLRYAALFYLHGHSVG--GTNPSLL 286 (363)
T ss_pred -C-------ceEEEEcCCCCcchHHHH---HHHHhCCCC-cEEEccccChHHHHHHHHhCCEEEeCCccCC--CCChHHH
Confidence 3 8999999 7555333322 222567776 89999987 6789999999999999988 6 7999999
Q ss_pred HHHHcCCCEEecCCCccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH-HhcCHHHHHHHHH
Q 002535 444 KALCFRKPIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSV-KNLMALETIEGYA 522 (911)
Q Consensus 444 EAMA~G~PVIaTd~gGi~EiV~dg~nGlLv~~~D~eaLAeaI~~LLsd~~~p~~~~~mg~~ar~~a-e~Fs~e~ia~~y~ 522 (911)
|||+||+|||+|+.|+..|++.+ +|.+++++|+ ++++|.+++++ ++.+.++++++++.+ ++|+|+.++++|.
T Consensus 287 EAma~G~PvI~s~~~~~~e~~~~--~g~~~~~~~~--l~~~i~~l~~~---~~~~~~~~~~~~~~~~~~fs~~~~~~~~~ 359 (363)
T cd04955 287 EAMAYGCPVLASDNPFNREVLGD--KAIYFKVGDD--LASLLEELEAD---PEEVSAMAKAARERIREKYTWEKIADQYE 359 (363)
T ss_pred HHHHcCCCEEEecCCccceeecC--CeeEecCchH--HHHHHHHHHhC---HHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 99999999999999999999977 7999988766 99999999999 999999999999998 4699999999999
Q ss_pred HHHH
Q 002535 523 MLLE 526 (911)
Q Consensus 523 ~Lye 526 (911)
++|+
T Consensus 360 ~~y~ 363 (363)
T cd04955 360 ELYK 363 (363)
T ss_pred HHhC
Confidence 9874
No 47
>PRK14098 glycogen synthase; Provisional
Probab=99.97 E-value=1.8e-28 Score=287.31 Aligned_cols=361 Identities=15% Similarity=0.149 Sum_probs=254.4
Q ss_pred CCCEEEEEeCCC----CCChHHHHHHHHHHHHHHCCCeEEEEEeCCCcchhh---h------hhc---------------
Q 002535 143 RKPQLALVFPDL----LIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEV---W------RNI--------------- 194 (911)
Q Consensus 143 rkprIalI~~~L----~~GGae~~v~~LAk~L~~~GyeV~V~t~~~g~~~~~---~------~~~--------------- 194 (911)
|.++|++|.... ..||..-++..|.++|+++||+|.|+.+..+..... . ..+
T Consensus 4 ~~~~il~v~~E~~p~~k~Ggl~dv~~~Lp~al~~~g~~v~v~~P~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (489)
T PRK14098 4 RNFKVLYVSGEVSPFVRVSALADFMASFPQALEEEGFEARIMMPKYGTINDRKFRLHDVLRLSDIEVPLKEKTDLLHVKV 83 (489)
T ss_pred CCcEEEEEeecchhhcccchHHHHHHHHHHHHHHCCCeEEEEcCCCCchhhhhhccccceEEEEEEEeecCeeEEEEEEE
Confidence 348999998866 479999999999999999999999998855332110 0 000
Q ss_pred ------CceEEEecc---------c----------hh----------HHHhhhh--cCccEEEEcCcchhHHHHHHhhCC
Q 002535 195 ------GVPVAILQT---------G----------RE----------KASFVNW--LNYDGILVNSLEAKVVISNIMQEP 237 (911)
Q Consensus 195 ------gi~v~~l~~---------~----------~~----------l~~lI~~--~kpDIIhvhs~~~~~~ia~L~~~~ 237 (911)
+++++.+.. + .. ....+.. .+|||||+|.+.+. .+..++...
T Consensus 84 ~~~~~~~v~~~~~~~~~~f~r~~~y~~~~~g~~~~d~~~rf~~f~~a~l~~~~~~~~~pDiiH~hdw~t~-l~~~~l~~~ 162 (489)
T PRK14098 84 TALPSSKIQTYFLYNEKYFKRNGLFTDMSLGGDLKGSAEKVIFFNVGVLETLQRLGWKPDIIHCHDWYAG-LVPLLLKTV 162 (489)
T ss_pred ecccCCCceEEEEeCHHHcCCCCcCCCCccCCCCCcHHHHHHHHHHHHHHHHHhcCCCCCEEEecCcHHH-HHHHHHHHH
Confidence 122221110 0 00 0111222 47999999997773 555544321
Q ss_pred ------CCCCCEEEEEcCchhh-----HHHHHHH----hhc---chhhHhhHHHHHhhcceEEecCCccc--ccc-----
Q 002535 238 ------FKSLPLVWTIHEGTLA-----TRARNYA----SSG---QLELLNDWKKVFNRATVVVFPDYVLP--MMY----- 292 (911)
Q Consensus 238 ------~~giPvV~tiH~~~L~-----~~l~k~~----~~~---~d~lIs~~~~~~~~a~~vvfpn~~l~--ii~----- 292 (911)
+.++|+|+|+|+.... ..+.... ... ....++..+..+..++.++..+.... +..
T Consensus 163 ~~~~~~~~~~~~V~TiHn~~~qg~~~~~~~~~~~~~~~~~~~~~~~~~~n~lk~~i~~ad~VitVS~~~a~ei~~~~~~~ 242 (489)
T PRK14098 163 YADHEFFKDIKTVLTIHNVYRQGVLPFKVFQKLLPEEVCSGLHREGDEVNMLYTGVEHADLLTTTSPRYAEEIAGDGEEA 242 (489)
T ss_pred hhhccccCCCCEEEEcCCCcccCCCCHHHHHHhCCHHhhhhhhhcCCcccHHHHHHHhcCcceeeCHHHHHHhCcCCCCC
Confidence 3479999999973210 0011100 000 01123344556677887776655411 111
Q ss_pred ccCC------CCCEEEeCCCCCCcccccccCch----------------hhHHHHHhhCCC--CCCeEEEEEEecccccc
Q 002535 293 SAFD------AGNYYVIPGSPAKAWEADTNMDL----------------YNDTVRVKMGFK--PDDLVIAIVGTQFMYRG 348 (911)
Q Consensus 293 ~~id------~~ki~VIpg~gVD~~~f~~~~~~----------------~k~~lR~~lgi~--~d~~vIL~VGsrl~~~K 348 (911)
.+++ ..++.+|+| |||.+.+.+.... .+..+++++|++ ++.++++++| ++.+.
T Consensus 243 ~gl~~~l~~~~~kl~~I~N-GID~~~~~p~~d~~~~~~~~~~~~~~k~~~k~~l~~~lgl~~~~~~~~i~~vg-Rl~~~- 319 (489)
T PRK14098 243 FGLDKVLEERKMRLHGILN-GIDTRQWNPSTDKLIKKRYSIERLDGKLENKKALLEEVGLPFDEETPLVGVII-NFDDF- 319 (489)
T ss_pred cChHHHHHhcCCCeeEEeC-CccccccCCcccccccccCCcchhhhHHHHHHHHHHHhCCCCccCCCEEEEec-ccccc-
Confidence 1222 578999995 9998766654321 145677788886 4568999999 55555
Q ss_pred ccccHHHHHHHHHHhhhhcccCCCCCCCEEEEEEe-CCCCCchHHHHHHHHHHcCCCCccEEEcccc--ccHHHHHHHcC
Q 002535 349 LWLEHALILRALLPLFSEVSVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAAE--GDVDSVLNTAD 425 (911)
Q Consensus 349 GiKg~dlLLeAl~~L~~~~p~~~~~~~~vkLvIVG-G~~~e~Y~~~Le~la~~lgL~~~~V~flG~v--~dV~~~L~~AD 425 (911)
||++++++|+..+.+. + ++|+|+| |+. .|.+.++++++++ ++ +|.++|.. +++..+|++||
T Consensus 320 --KG~d~li~a~~~l~~~--~-------~~lvivG~G~~--~~~~~l~~l~~~~--~~-~V~~~g~~~~~~~~~~~a~aD 383 (489)
T PRK14098 320 --QGAELLAESLEKLVEL--D-------IQLVICGSGDK--EYEKRFQDFAEEH--PE-QVSVQTEFTDAFFHLAIAGLD 383 (489)
T ss_pred --CcHHHHHHHHHHHHhc--C-------cEEEEEeCCCH--HHHHHHHHHHHHC--CC-CEEEEEecCHHHHHHHHHhCC
Confidence 9999999999998753 3 8999999 753 3567888998865 45 79999866 45789999999
Q ss_pred eeEEcccCCcCCccHHHHHHHHcCCCEEecCCCcccccccc----CccEEEEcCCCHHHHHHHHHHHH---HcCCCcHHH
Q 002535 426 VVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSNIRKYVDD----RVNGYLFPKENIKALTHIILQVI---TNGKISPFA 498 (911)
Q Consensus 426 VfVlPS~~E~qGFplvLLEAMA~G~PVIaTd~gGi~EiV~d----g~nGlLv~~~D~eaLAeaI~~LL---sd~~~p~~~ 498 (911)
++++||..| +||++.+|||+||+|+|++++||+.|.|.+ +.+|+++++.|+++|+++|.+++ ++ ++.+
T Consensus 384 i~l~PS~~E--~~Gl~~lEAma~G~ppVv~~~GGl~d~v~~~~~~~~~G~l~~~~d~~~la~ai~~~l~~~~~---~~~~ 458 (489)
T PRK14098 384 MLLMPGKIE--SCGMLQMFAMSYGTIPVAYAGGGIVETIEEVSEDKGSGFIFHDYTPEALVAKLGEALALYHD---EERW 458 (489)
T ss_pred EEEeCCCCC--CchHHHHHHHhCCCCeEEecCCCCceeeecCCCCCCceeEeCCCCHHHHHHHHHHHHHHHcC---HHHH
Confidence 999999999 699999999999999999999999998864 67999999999999999999865 56 7777
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhc
Q 002535 499 RNIASIGRRSVKNLMALETIEGYAMLLENVLK 530 (911)
Q Consensus 499 ~~mg~~ar~~ae~Fs~e~ia~~y~~Lye~vL~ 530 (911)
.+|+.++. .++|+|+.++++|.++|+++++
T Consensus 459 ~~~~~~~~--~~~fsw~~~a~~y~~lY~~~~~ 488 (489)
T PRK14098 459 EELVLEAM--ERDFSWKNSAEEYAQLYRELLG 488 (489)
T ss_pred HHHHHHHh--cCCCChHHHHHHHHHHHHHHhc
Confidence 77776553 3679999999999999999864
No 48
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=99.97 E-value=1.8e-28 Score=266.94 Aligned_cols=346 Identities=21% Similarity=0.237 Sum_probs=251.1
Q ss_pred EEEeCCCC---CChHHHHHHHHHHHHHHCCCeEEEEEeCCCcchhhhhhc---------Cce----------EEEeccch
Q 002535 148 ALVFPDLL---IDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNI---------GVP----------VAILQTGR 205 (911)
Q Consensus 148 alI~~~L~---~GGae~~v~~LAk~L~~~GyeV~V~t~~~g~~~~~~~~~---------gi~----------v~~l~~~~ 205 (911)
+++.+... .||.+..+..+++.|.+.||+|.+++............. ... ........
T Consensus 2 Lii~~~~p~~~~~g~~~~~~~~~~~l~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (377)
T cd03798 2 LVISSLYPPPNNGGGGIFVKELARALAKRGVEVTVLAPGPWGPKLLDLLKGRLVGVERLPVLLPVVPLLKGPLLYLLAAR 81 (377)
T ss_pred eEeccCCCCCCCchHHHHHHHHHHHHHHCCCceEEEecCCCCCCchhhcccccccccccccCcchhhccccchhHHHHHH
Confidence 45555444 499999999999999999999999998653321111000 000 00011112
Q ss_pred hHHHhhh--hcCccEEEEcCcchhHHHHHHhhCCCCCCCEEEEEcCchhhHHHHHHHhhcchhhHhhHHHHHhhcceEEe
Q 002535 206 EKASFVN--WLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRATVVVF 283 (911)
Q Consensus 206 ~l~~lI~--~~kpDIIhvhs~~~~~~ia~L~~~~~~giPvV~tiH~~~L~~~l~k~~~~~~d~lIs~~~~~~~~a~~vvf 283 (911)
.+...+. ..++|+||++.......+..... +..++|++++.|+.......... .........+..++.+++
T Consensus 82 ~~~~~l~~~~~~~dii~~~~~~~~~~~~~~~~-~~~~~~~i~~~h~~~~~~~~~~~------~~~~~~~~~~~~~d~ii~ 154 (377)
T cd03798 82 ALLKLLKLKRFRPDLIHAHFAYPDGFAAALLK-RKLGIPLVVTLHGSDVNLLPRKR------LLRALLRRALRRADAVIA 154 (377)
T ss_pred HHHHHHhcccCCCCEEEEeccchHHHHHHHHH-HhcCCCEEEEeecchhcccCchh------hHHHHHHHHHhcCCeEEe
Confidence 3455676 78999999997766444444443 35668999999984332111000 111123344556666666
Q ss_pred cCCcccccccc--CCCCCEEEeCCCCCCcccccccCchhhHHHHHhhCCCCCCeEEEEEEeccccccccccHHHHHHHHH
Q 002535 284 PDYVLPMMYSA--FDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALL 361 (911)
Q Consensus 284 pn~~l~ii~~~--id~~ki~VIpg~gVD~~~f~~~~~~~k~~lR~~lgi~~d~~vIL~VGsrl~~~KGiKg~dlLLeAl~ 361 (911)
.+......... ....++.++|+ ++|...+...... .. ...+...+.++++++|+ +... ||++.+++++.
T Consensus 155 ~s~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~~~~---~~-~~~~~~~~~~~i~~~g~-~~~~---k~~~~li~~~~ 225 (377)
T cd03798 155 VSEALADELKALGIDPEKVTVIPN-GVDTERFSPADRA---EA-RKLGLPEDKKVILFVGR-LVPR---KGIDYLIEALA 225 (377)
T ss_pred CCHHHHHHHHHhcCCCCceEEcCC-CcCcccCCCcchH---HH-HhccCCCCceEEEEecc-Cccc---cCHHHHHHHHH
Confidence 65542222222 35678899984 7877444332221 11 34455667889999995 4444 99999999999
Q ss_pred HhhhhcccCCCCCCCEEEEEEe-CCCCCchHHHHHHHHHHcCCCCccEEEcccc--ccHHHHHHHcCeeEEcccCCcCCc
Q 002535 362 PLFSEVSVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAAE--GDVDSVLNTADVVIYGSFLEEQTF 438 (911)
Q Consensus 362 ~L~~~~p~~~~~~~~vkLvIVG-G~~~e~Y~~~Le~la~~lgL~~~~V~flG~v--~dV~~~L~~ADVfVlPS~~E~qGF 438 (911)
.+.+++++ ++++++| |+.. ..+++.++++++.+ +|.+.|++ +++.++|..||++++||..| |+
T Consensus 226 ~~~~~~~~-------~~l~i~g~~~~~----~~~~~~~~~~~~~~-~v~~~g~~~~~~~~~~~~~ad~~i~~~~~~--~~ 291 (377)
T cd03798 226 RLLKKRPD-------VHLVIVGDGPLR----EALEALAAELGLED-RVTFLGAVPHEEVPAYYAAADVFVLPSLRE--GF 291 (377)
T ss_pred HHHhcCCC-------eEEEEEcCCcch----HHHHHHHHhcCCcc-eEEEeCCCCHHHHHHHHHhcCeeecchhhc--cC
Confidence 99887766 9999999 6654 66778888888887 89999987 67999999999999999987 79
Q ss_pred cHHHHHHHHcCCCEEecCCCccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH-HhcCHHHH
Q 002535 439 PEILVKALCFRKPIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSV-KNLMALET 517 (911)
Q Consensus 439 plvLLEAMA~G~PVIaTd~gGi~EiV~dg~nGlLv~~~D~eaLAeaI~~LLsd~~~p~~~~~mg~~ar~~a-e~Fs~e~i 517 (911)
|++++|||++|+|||+++.++..+++.++.+|++++++|+++++++|.+++++ +.. +++.++++.+ ++|+|+..
T Consensus 292 ~~~~~Ea~~~G~pvI~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~---~~~--~~~~~~~~~~~~~~s~~~~ 366 (377)
T cd03798 292 GLVLLEAMACGLPVVATDVGGIPEIITDGENGLLVPPGDPEALAEAILRLLAD---PWL--RLGRAARRRVAERFSWENV 366 (377)
T ss_pred ChHHHHHHhcCCCEEEecCCChHHHhcCCcceeEECCCCHHHHHHHHHHHhcC---cHH--HHhHHHHHHHHHHhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999 766 7777778777 77999999
Q ss_pred HHHHHHHHHHH
Q 002535 518 IEGYAMLLENV 528 (911)
Q Consensus 518 a~~y~~Lye~v 528 (911)
++.+.++|+++
T Consensus 367 ~~~~~~~~~~l 377 (377)
T cd03798 367 AERLLELYREV 377 (377)
T ss_pred HHHHHHHHhhC
Confidence 99999998763
No 49
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=99.97 E-value=2e-28 Score=268.74 Aligned_cols=351 Identities=16% Similarity=0.122 Sum_probs=247.2
Q ss_pred EEEEEeCCCCC--ChHHHHHHHHHHHHHHCCCeEEEEEeCCCcchhhh-------hhcCceEEEeccch-----------
Q 002535 146 QLALVFPDLLI--DPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVW-------RNIGVPVAILQTGR----------- 205 (911)
Q Consensus 146 rIalI~~~L~~--GGae~~v~~LAk~L~~~GyeV~V~t~~~g~~~~~~-------~~~gi~v~~l~~~~----------- 205 (911)
||++|.+.... ||.+..+..++++|.+.||+|.+++.......... ...++.+..++...
T Consensus 1 kIl~i~~~~~~~~~G~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (394)
T cd03794 1 KILILSQYFPPELGGGAFRTTELAEELVKRGHEVTVITGSPNYPSGKIYKGYKREEVDGVRVHRVPLPPYKKNGLLKRLL 80 (394)
T ss_pred CEEEEecccCCccCCcceeHHHHHHHHHhCCceEEEEecCCCcccccccccceEEecCCeEEEEEecCCCCccchHHHHH
Confidence 57788876654 89999999999999999999999987653221111 11233333322110
Q ss_pred -------hHHHhh--hhcCccEEEEcCcchhHHHHHHhhCCCCCCCEEEEEcCchhhHHHHHH-Hhhcc---hhhHhhHH
Q 002535 206 -------EKASFV--NWLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNY-ASSGQ---LELLNDWK 272 (911)
Q Consensus 206 -------~l~~lI--~~~kpDIIhvhs~~~~~~ia~L~~~~~~giPvV~tiH~~~L~~~l~k~-~~~~~---d~lIs~~~ 272 (911)
.....+ +..+||+||++++............+..++|+++++|+.......... ..... .......+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (394)
T cd03794 81 NYLSFALSALLALLKRRRRPDVIIATSPPLLIALAALLLARLKGAPFVLEVRDLWPESAVALGLLKNGSLLYRLLRKLER 160 (394)
T ss_pred hhhHHHHHHHHHHHhcccCCCEEEEcCChHHHHHHHHHHHHhcCCCEEEEehhhcchhHHHccCccccchHHHHHHHHHH
Confidence 011112 357899999998443223333332335589999999973111100000 00000 11111234
Q ss_pred HHHhhcceEEecCCccccc--cccCCCCCEEEeCCCCCCcccccccCchhhHHHHHhhCCCCCCeEEEEEEecccccccc
Q 002535 273 KVFNRATVVVFPDYVLPMM--YSAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLW 350 (911)
Q Consensus 273 ~~~~~a~~vvfpn~~l~ii--~~~id~~ki~VIpg~gVD~~~f~~~~~~~k~~lR~~lgi~~d~~vIL~VGsrl~~~KGi 350 (911)
..++.++.+++.+...... .......++.++|+ +++...+.+.... ..+.......+..+++++|+ +...
T Consensus 161 ~~~~~~d~vi~~s~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~i~~~G~-~~~~--- 232 (394)
T cd03794 161 LIYRRADAIVVISPGMREYLVRRGVPPEKISVIPN-GVDLELFKPPPAD---ESLRKELGLDDKFVVLYAGN-IGRA--- 232 (394)
T ss_pred HHHhcCCEEEEECHHHHHHHHhcCCCcCceEEcCC-CCCHHHcCCccch---hhhhhccCCCCcEEEEEecC-cccc---
Confidence 4566777777766553222 24556678899994 7776433322211 11344455667889999994 4444
Q ss_pred ccHHHHHHHHHHhhhhcccCCCCCCCEEEEEEe-CCCCCchHHHHHHHHHHcCCCCccEEEcccc--ccHHHHHHHcCee
Q 002535 351 LEHALILRALLPLFSEVSVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAAE--GDVDSVLNTADVV 427 (911)
Q Consensus 351 Kg~dlLLeAl~~L~~~~p~~~~~~~~vkLvIVG-G~~~e~Y~~~Le~la~~lgL~~~~V~flG~v--~dV~~~L~~ADVf 427 (911)
||++.+++|+..+.+. ++ ++++++| |+.. +.+++.+...++++ |.++|+. +++.++|+.||++
T Consensus 233 k~~~~l~~~~~~l~~~-~~-------~~l~i~G~~~~~----~~~~~~~~~~~~~~--v~~~g~~~~~~~~~~~~~~di~ 298 (394)
T cd03794 233 QGLDTLLEAAALLKDR-PD-------IRFLIVGDGPEK----EELKELAKALGLDN--VTFLGRVPKEELPELLAAADVG 298 (394)
T ss_pred cCHHHHHHHHHHHhhc-CC-------eEEEEeCCcccH----HHHHHHHHHcCCCc--EEEeCCCChHHHHHHHHhhCee
Confidence 9999999999999876 55 9999999 7665 66677666667765 9999976 7899999999999
Q ss_pred EEcccCCc---CCccHHHHHHHHcCCCEEecCCCccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHH
Q 002535 428 IYGSFLEE---QTFPEILVKALCFRKPIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASI 504 (911)
Q Consensus 428 VlPS~~E~---qGFplvLLEAMA~G~PVIaTd~gGi~EiV~dg~nGlLv~~~D~eaLAeaI~~LLsd~~~p~~~~~mg~~ 504 (911)
++||..|+ .++|++++|||++|+|||+++.++..+++.++.+|++++++|+++++++|.++++| ++.+.+|+++
T Consensus 299 i~~~~~~~~~~~~~p~~~~Ea~~~G~pvi~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~---~~~~~~~~~~ 375 (394)
T cd03794 299 LVPLKPGPAFEGVSPSKLFEYMAAGKPVLASVDGESAELVEEAGAGLVVPPGDPEALAAAILELLDD---PEERAEMGEN 375 (394)
T ss_pred EEeccCcccccccCchHHHHHHHCCCcEEEecCCCchhhhccCCcceEeCCCCHHHHHHHHHHHHhC---hHHHHHHHHH
Confidence 99998872 24599999999999999999999999999998899999999999999999999999 9999999999
Q ss_pred HHHHHH-hcCHHHHHHHH
Q 002535 505 GRRSVK-NLMALETIEGY 521 (911)
Q Consensus 505 ar~~ae-~Fs~e~ia~~y 521 (911)
+++.++ +|+|+.++++|
T Consensus 376 ~~~~~~~~~s~~~~~~~~ 393 (394)
T cd03794 376 GRRYVEEKFSREKLAERL 393 (394)
T ss_pred HHHHHHHhhcHHHHHHhc
Confidence 999995 79999999876
No 50
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=99.97 E-value=2e-28 Score=267.89 Aligned_cols=326 Identities=20% Similarity=0.195 Sum_probs=226.7
Q ss_pred EEEEEeCCC---CCChHHHHHHHHHHHHHHCCCeEEEEEeCCCcchhhhhhcCceEEEe---------------------
Q 002535 146 QLALVFPDL---LIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAIL--------------------- 201 (911)
Q Consensus 146 rIalI~~~L---~~GGae~~v~~LAk~L~~~GyeV~V~t~~~g~~~~~~~~~gi~v~~l--------------------- 201 (911)
||+++.+.. ..||++.++..++++|.++||+|.+++....................
T Consensus 1 kIl~i~~~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (359)
T cd03823 1 RILVVNHLYPPRSVGGAEVVAHDLAEALAKRGHEVAVLTAGEDPPRQDKEVIGVVVYGRPIDEVLRSALPRDLFHLSDYD 80 (359)
T ss_pred CeeEEcccCCcccccchHHHHHHHHHHHHhcCCceEEEeCCCCCCCcccccccceeeccccccccCCCchhhhhHHHhcc
Confidence 466666544 45899999999999999999999999986643221111111111110
Q ss_pred --ccchhHHHhhhhcCccEEEEcCcchhHHHHHHhhCCCCCCCEEEEEcCchhhHHHHHHHhhcchhhHhhHHHHHhhcc
Q 002535 202 --QTGREKASFVNWLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRAT 279 (911)
Q Consensus 202 --~~~~~l~~lI~~~kpDIIhvhs~~~~~~ia~L~~~~~~giPvV~tiH~~~L~~~l~k~~~~~~d~lIs~~~~~~~~a~ 279 (911)
.....+..+++..+||+||+++........... .+..++|+|+++|+............... +
T Consensus 81 ~~~~~~~~~~~~~~~~~dii~~~~~~~~~~~~~~~-~~~~~~~~i~~~hd~~~~~~~~~~~~~~~--------------d 145 (359)
T cd03823 81 NPAVVAEFARLLEDFRPDVVHFHHLQGLGVSILRA-ARDRGIPIVLTLHDYWLICPRQGLFKKGG--------------D 145 (359)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCccchHHHHHHH-HHhcCCCEEEEEeeeeeecchhhhhccCC--------------C
Confidence 011234455677899999999975432222111 12456999999997422211111111111 2
Q ss_pred eEEecCCcccc--ccccCCCCCEEEeCCCCCCcccccccCchhhHHHHHhhCCCCCCeEEEEEEeccccccccccHHHHH
Q 002535 280 VVVFPDYVLPM--MYSAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALIL 357 (911)
Q Consensus 280 ~vvfpn~~l~i--i~~~id~~ki~VIpg~gVD~~~f~~~~~~~k~~lR~~lgi~~d~~vIL~VGsrl~~~KGiKg~dlLL 357 (911)
.++..+..... ........++.++|+ |+|...+..... +.+.++++++++|+ +... ||++.++
T Consensus 146 ~ii~~s~~~~~~~~~~~~~~~~~~vi~n-~~~~~~~~~~~~----------~~~~~~~~i~~~G~-~~~~---k~~~~li 210 (359)
T cd03823 146 AVIAPSRFLLDRYVANGLFAEKISVIRN-GIDLDRAKRPRR----------APPGGRLRFGFIGQ-LTPH---KGVDLLL 210 (359)
T ss_pred EEEEeCHHHHHHHHHcCCCccceEEecC-CcChhhcccccc----------CCCCCceEEEEEec-Cccc---cCHHHHH
Confidence 23332222110 111122467888884 788743322110 24556788999995 4554 9999999
Q ss_pred HHHHHhhhhcccCCCCCCCEEEEEEe-CCCCCchHHHHHHHHHHcCCCCccEEEcccc--ccHHHHHHHcCeeEEccc-C
Q 002535 358 RALLPLFSEVSVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAAE--GDVDSVLNTADVVIYGSF-L 433 (911)
Q Consensus 358 eAl~~L~~~~p~~~~~~~~vkLvIVG-G~~~e~Y~~~Le~la~~lgL~~~~V~flG~v--~dV~~~L~~ADVfVlPS~-~ 433 (911)
+++..+.+ ++ ++|+++| |+.. ...+... +..+ +|+++|+. +++.++|+.||++++||. .
T Consensus 211 ~~~~~l~~--~~-------~~l~i~G~~~~~----~~~~~~~---~~~~-~v~~~g~~~~~~~~~~~~~ad~~i~ps~~~ 273 (359)
T cd03823 211 EAFKRLPR--GD-------IELVIVGNGLEL----EEESYEL---EGDP-RVEFLGAYPQEEIDDFYAEIDVLVVPSIWP 273 (359)
T ss_pred HHHHHHHh--cC-------cEEEEEcCchhh----hHHHHhh---cCCC-eEEEeCCCCHHHHHHHHHhCCEEEEcCccc
Confidence 99999876 45 8999999 5543 1221211 4555 79999988 899999999999999997 5
Q ss_pred CcCCccHHHHHHHHcCCCEEecCCCccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhcC
Q 002535 434 EEQTFPEILVKALCFRKPIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSVKNLM 513 (911)
Q Consensus 434 E~qGFplvLLEAMA~G~PVIaTd~gGi~EiV~dg~nGlLv~~~D~eaLAeaI~~LLsd~~~p~~~~~mg~~ar~~ae~Fs 513 (911)
| |+|++++|||+||+|||+++.++..|++.++.+|++++++|+++++++|.+++++ ++.+++|++++++..+.
T Consensus 274 e--~~~~~~~Ea~a~G~Pvi~~~~~~~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~~---~~~~~~~~~~~~~~~~~-- 346 (359)
T cd03823 274 E--NFPLVIREALAAGVPVIASDIGGMAELVRDGVNGLLFPPGDAEDLAAALERLIDD---PDLLERLRAGIEPPRSI-- 346 (359)
T ss_pred C--CCChHHHHHHHCCCCEEECCCCCHHHHhcCCCcEEEECCCCHHHHHHHHHHHHhC---hHHHHHHHHhHHHhhhH--
Confidence 6 7999999999999999999999999999999999999999999999999999999 99999999998887754
Q ss_pred HHHHHHHHHHHHH
Q 002535 514 ALETIEGYAMLLE 526 (911)
Q Consensus 514 ~e~ia~~y~~Lye 526 (911)
++++++|.++|+
T Consensus 347 -~~~~~~~~~~~~ 358 (359)
T cd03823 347 -EDQAEEYLKLYR 358 (359)
T ss_pred -HHHHHHHHHHhh
Confidence 888888888875
No 51
>PLN02949 transferase, transferring glycosyl groups
Probab=99.97 E-value=5.9e-28 Score=280.73 Aligned_cols=361 Identities=14% Similarity=0.069 Sum_probs=241.7
Q ss_pred CCCCEEEEEeCCCCCC-hHHHHHHHHHHHHHHCCC--eEEEEEeCCCcchh-----hhhhcCceE------EEe------
Q 002535 142 YRKPQLALVFPDLLID-PQQLQMVTIAIALREIGY--AIQVYSLEDGRAHE-----VWRNIGVPV------AIL------ 201 (911)
Q Consensus 142 ~rkprIalI~~~L~~G-Gae~~v~~LAk~L~~~Gy--eV~V~t~~~g~~~~-----~~~~~gi~v------~~l------ 201 (911)
.+|+++++++|+++.| |+|+.+...+.+|++.|+ +|.+++...++... ..+.+++.+ ..+
T Consensus 31 ~~~~~v~f~HP~~~~ggG~ERvl~~a~~~l~~~~~~~~v~iyt~~~d~~~~~~l~~~~~~~~i~~~~~~~~v~l~~~~~~ 110 (463)
T PLN02949 31 SRKRAVGFFHPYTNDGGGGERVLWCAVRAIQEENPDLDCVIYTGDHDASPDSLAARARDRFGVELLSPPKVVHLRKRKWI 110 (463)
T ss_pred CCCcEEEEECCCCCCCCChhhHHHHHHHHHHhhCCCCeEEEEcCCCCCCHHHHHHHHHhhcceecCCCceEEEecccccc
Confidence 3577999999999877 999999999999999999 66666654222111 223444421 111
Q ss_pred ccc---------hhHH------HhhhhcCccEEEEcCcchhHHHHHHhhCCCCCCCEEEEEcCchhhH-HHHHHH-----
Q 002535 202 QTG---------REKA------SFVNWLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLAT-RARNYA----- 260 (911)
Q Consensus 202 ~~~---------~~l~------~lI~~~kpDIIhvhs~~~~~~ia~L~~~~~~giPvV~tiH~~~L~~-~l~k~~----- 260 (911)
+.. +.+. ..+....| .|++.+... ++...++ + ..++|+++.+|...... .+.+..
T Consensus 111 ~~~~~~~~t~~~~~~~~~~l~~~~~~~~~p-~v~vDt~~~-~~~~pl~-~-~~~~~v~~yvH~p~~~~dm~~~v~~~~~~ 186 (463)
T PLN02949 111 EEETYPRFTMIGQSLGSVYLAWEALCKFTP-LYFFDTSGY-AFTYPLA-R-LFGCKVVCYTHYPTISSDMISRVRDRSSM 186 (463)
T ss_pred ccccCCceehHHHHHHHHHHHHHHHHhcCC-CEEEeCCCc-ccHHHHH-H-hcCCcEEEEEeCCcchHHHHHHHhhcccc
Confidence 110 0000 01222344 566665543 1223333 1 34689999999743221 111100
Q ss_pred -------hh-c--------chhhHh-hHHHHHhhcceEEecCCcccc-cccc-CCCCCEEEeCCCCCCcccccccCchhh
Q 002535 261 -------SS-G--------QLELLN-DWKKVFNRATVVVFPDYVLPM-MYSA-FDAGNYYVIPGSPAKAWEADTNMDLYN 321 (911)
Q Consensus 261 -------~~-~--------~d~lIs-~~~~~~~~a~~vvfpn~~l~i-i~~~-id~~ki~VIpg~gVD~~~f~~~~~~~k 321 (911)
.+ . ...... .+......++.++..+..... +... ....++.++++ |+|...+...+.
T Consensus 187 ~~~~~~~a~~~~~~~~k~~Y~~~~~~l~~~~~~~ad~ii~nS~~t~~~l~~~~~~~~~i~vvyp-~vd~~~~~~~~~--- 262 (463)
T PLN02949 187 YNNDASIARSFWLSTCKILYYRAFAWMYGLVGRCAHLAMVNSSWTKSHIEALWRIPERIKRVYP-PCDTSGLQALPL--- 262 (463)
T ss_pred cCccchhhccchhHHHHHHHHHHHHHHHHHHcCCCCEEEECCHHHHHHHHHHcCCCCCeEEEcC-CCCHHHcccCCc---
Confidence 00 0 000000 122333556666655444221 1111 12246777773 676533321111
Q ss_pred HHHHHhhCCCCCCeEEEEEEeccccccccccHHHHHHHHHHhhhhcccCCCCCCCEEEEEEe-CCC--CCchHHHHHHHH
Q 002535 322 DTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILS-GDS--TSNYSVVIEAIA 398 (911)
Q Consensus 322 ~~lR~~lgi~~d~~vIL~VGsrl~~~KGiKg~dlLLeAl~~L~~~~p~~~~~~~~vkLvIVG-G~~--~e~Y~~~Le~la 398 (911)
..++++..++++| ++.+. ||++.+|+|+..+.++.++ ..++++|+|+| |.. ..+|.+++++++
T Consensus 263 -------~~~~~~~~il~vG-R~~~~---Kg~~llI~A~~~l~~~~~~---~~~~~~LvIvG~~~~~~~~~~~~eL~~la 328 (463)
T PLN02949 263 -------ERSEDPPYIISVA-QFRPE---KAHALQLEAFALALEKLDA---DVPRPKLQFVGSCRNKEDEERLQKLKDRA 328 (463)
T ss_pred -------cccCCCCEEEEEE-eeecc---CCHHHHHHHHHHHHHhccc---cCCCcEEEEEeCCCCcccHHHHHHHHHHH
Confidence 0123456899999 66665 9999999999988764321 12349999999 532 234667899999
Q ss_pred HHcCCCCccEEEcccc--ccHHHHHHHcCeeEEcccCCcCCccHHHHHHHHcCCCEEecCCCccc-ccccc---CccEEE
Q 002535 399 HNLHYPLGVVKHMAAE--GDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSNIR-KYVDD---RVNGYL 472 (911)
Q Consensus 399 ~~lgL~~~~V~flG~v--~dV~~~L~~ADVfVlPS~~E~qGFplvLLEAMA~G~PVIaTd~gGi~-EiV~d---g~nGlL 472 (911)
+++++++ +|+|+|+. +++.++|+.||++++||..| |||++++||||+|+|||+++.||.. |++.+ +.+|++
T Consensus 329 ~~l~L~~-~V~f~g~v~~~el~~ll~~a~~~v~~s~~E--~FGivvlEAMA~G~PVIa~~~gGp~~eIV~~~~~g~tG~l 405 (463)
T PLN02949 329 KELGLDG-DVEFHKNVSYRDLVRLLGGAVAGLHSMIDE--HFGISVVEYMAAGAVPIAHNSAGPKMDIVLDEDGQQTGFL 405 (463)
T ss_pred HHcCCCC-cEEEeCCCCHHHHHHHHHhCcEEEeCCccC--CCChHHHHHHHcCCcEEEeCCCCCcceeeecCCCCccccc
Confidence 9999998 99999987 78999999999999999988 7999999999999999999999975 77765 678999
Q ss_pred EcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcC
Q 002535 473 FPKENIKALTHIILQVITNGKISPFARNIASIGRRSVKNLMALETIEGYAMLLENVLKL 531 (911)
Q Consensus 473 v~~~D~eaLAeaI~~LLsd~~~p~~~~~mg~~ar~~ae~Fs~e~ia~~y~~Lye~vL~~ 531 (911)
++ |+++++++|.+++++. ++.+++|+++|++.+++|+++++++++.+.++++++.
T Consensus 406 ~~--~~~~la~ai~~ll~~~--~~~r~~m~~~ar~~~~~FS~e~~~~~~~~~i~~l~~~ 460 (463)
T PLN02949 406 AT--TVEEYADAILEVLRMR--ETERLEIAAAARKRANRFSEQRFNEDFKDAIRPILNS 460 (463)
T ss_pred CC--CHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhh
Confidence 85 9999999999999840 5677899999999998899999999999999988764
No 52
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=99.97 E-value=1.3e-28 Score=270.88 Aligned_cols=343 Identities=14% Similarity=0.100 Sum_probs=242.4
Q ss_pred EEEEEeCCCCC---ChHHHHHHHHHHHHHHCCCeEEEEEeCCCcchhhhhhcCce--------E----EEeccchhHHHh
Q 002535 146 QLALVFPDLLI---DPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVP--------V----AILQTGREKASF 210 (911)
Q Consensus 146 rIalI~~~L~~---GGae~~v~~LAk~L~~~GyeV~V~t~~~g~~~~~~~~~gi~--------v----~~l~~~~~l~~l 210 (911)
+|+++...+.. ||++.++.+++++|.+.|++|.+++................ . ............
T Consensus 1 ~ili~~~~~~~~~~gG~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (365)
T cd03809 1 RILIDARFLASRRPTGIGRYARELLRALLKLDPEEVLLLLPGAPGLLLLPLRAALRLLLRLPRRLLWGLLFLLRAGDRLL 80 (365)
T ss_pred CEEEechhhhcCCCCcHHHHHHHHHHHHHhcCCceEEEEecCccccccccchhccccccccccccccchhhHHHHHHHHH
Confidence 46677776654 99999999999999999999999998764322111111000 0 000001112223
Q ss_pred hhhcCccEEEEcCcchhHHHHHHhhCCCCCCCEEEEEcCchhhHHHHHHHhhcchhhHhhHHHHHhhcceEEecCCcccc
Q 002535 211 VNWLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRATVVVFPDYVLPM 290 (911)
Q Consensus 211 I~~~kpDIIhvhs~~~~~~ia~L~~~~~~giPvV~tiH~~~L~~~l~k~~~~~~d~lIs~~~~~~~~a~~vvfpn~~l~i 290 (911)
+...++|+||+++.... .. +..++|+|+++|+.........................+..++.++..+.....
T Consensus 81 ~~~~~~Dii~~~~~~~~-~~------~~~~~~~i~~~hd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~s~~~~~ 153 (365)
T cd03809 81 LLLLGLDLLHSPHNTAP-LL------RLRGVPVVVTIHDLIPLRFPEYFSPGFRRYFRRLLRRALRRADAIITVSEATKR 153 (365)
T ss_pred hhhcCCCeeeecccccC-cc------cCCCCCEEEEeccchhhhCcccCCHHHHHHHHHHHHHHHHHcCEEEEccHHHHH
Confidence 44478999999998773 22 356899999999732211000000000111112345556677777776655221
Q ss_pred c---cccCCCCCEEEeCCCCCCcccccccCchhhHHHHHhhCCCCCCeEEEEEEeccccccccccHHHHHHHHHHhhhhc
Q 002535 291 M---YSAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEV 367 (911)
Q Consensus 291 i---~~~id~~ki~VIpg~gVD~~~f~~~~~~~k~~lR~~lgi~~d~~vIL~VGsrl~~~KGiKg~dlLLeAl~~L~~~~ 367 (911)
. ....+..++.++|+ ++|...+.... ... +.......++++++++|+ +.+. ||++.+++++..+.+..
T Consensus 154 ~~~~~~~~~~~~~~vi~~-~~~~~~~~~~~---~~~-~~~~~~~~~~~~i~~~G~-~~~~---K~~~~~l~~~~~~~~~~ 224 (365)
T cd03809 154 DLLRYLGVPPDKIVVIPL-GVDPRFRPPPA---EAE-VLRALYLLPRPYFLYVGT-IEPR---KNLERLLEAFARLPAKG 224 (365)
T ss_pred HHHHHhCcCHHHEEeecc-ccCccccCCCc---hHH-HHHHhcCCCCCeEEEeCC-Cccc---cCHHHHHHHHHHHHHhc
Confidence 1 12234568889984 78774332221 111 334455667789999994 5554 99999999999999887
Q ss_pred ccCCCCCCCEEEEEEe-CCCCCchHHHHHHHHHHcCCCCccEEEcccc--ccHHHHHHHcCeeEEcccCCcCCccHHHHH
Q 002535 368 SVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAAE--GDVDSVLNTADVVIYGSFLEEQTFPEILVK 444 (911)
Q Consensus 368 p~~~~~~~~vkLvIVG-G~~~e~Y~~~Le~la~~lgL~~~~V~flG~v--~dV~~~L~~ADVfVlPS~~E~qGFplvLLE 444 (911)
++ ++++++| +.... ....+..+++++.+ +|+++|++ +++.++|+.||++++||..| |+|++++|
T Consensus 225 ~~-------~~l~i~G~~~~~~---~~~~~~~~~~~~~~-~v~~~g~~~~~~~~~~~~~~d~~l~ps~~e--~~~~~~~E 291 (365)
T cd03809 225 PD-------PKLVIVGKRGWLN---EELLARLRELGLGD-RVRFLGYVSDEELAALYRGARAFVFPSLYE--GFGLPVLE 291 (365)
T ss_pred CC-------CCEEEecCCcccc---HHHHHHHHHcCCCC-eEEECCCCChhHHHHHHhhhhhhcccchhc--cCCCCHHH
Confidence 66 8999999 43321 23333335678877 89999988 88999999999999999998 79999999
Q ss_pred HHHcCCCEEecCCCccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHH
Q 002535 445 ALCFRKPIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSVKNLMALETIEGYA 522 (911)
Q Consensus 445 AMA~G~PVIaTd~gGi~EiV~dg~nGlLv~~~D~eaLAeaI~~LLsd~~~p~~~~~mg~~ar~~ae~Fs~e~ia~~y~ 522 (911)
||++|+|||+++.|++.|++.+ +|++++++|+++++++|.++++| ++.+.+|++++++.+++|+|+++++.|.
T Consensus 292 a~a~G~pvI~~~~~~~~e~~~~--~~~~~~~~~~~~~~~~i~~l~~~---~~~~~~~~~~~~~~~~~~sw~~~~~~~~ 364 (365)
T cd03809 292 AMACGTPVIASNISSLPEVAGD--AALYFDPLDPEALAAAIERLLED---PALREELRERGLARAKRFSWEKTARRTL 364 (365)
T ss_pred HhcCCCcEEecCCCCccceecC--ceeeeCCCCHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 9999999999999999999855 69999999999999999999999 9999999999998889999999998875
No 53
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=99.96 E-value=1.5e-27 Score=274.29 Aligned_cols=348 Identities=12% Similarity=0.047 Sum_probs=225.4
Q ss_pred CEEEEEeCCCCCChHHHHHHHHHHHHHHCCCeEEEEEeCCCcch-hhhhhcCceEEEeccch--h---------------
Q 002535 145 PQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAH-EVWRNIGVPVAILQTGR--E--------------- 206 (911)
Q Consensus 145 prIalI~~~L~~GGae~~v~~LAk~L~~~GyeV~V~t~~~g~~~-~~~~~~gi~v~~l~~~~--~--------------- 206 (911)
.|+.++... . .|.+..+..+++.|.+.||+|+|++....... ......++.+..+.... .
T Consensus 4 ~~~~~~~~~-~-~~~~~R~~~~a~~L~~~G~~V~ii~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (415)
T cd03816 4 KRVCVLVLG-D-IGRSPRMQYHALSLAKHGWKVDLVGYLETPPHDEILSNPNITIHPLPPPPQRLNKLPFLLFAPLKVLW 81 (415)
T ss_pred cEEEEEEec-c-cCCCHHHHHHHHHHHhcCceEEEEEecCCCCCHHHhcCCCEEEEECCCCccccccchHHHHHHHHHHH
Confidence 344444442 2 55556668899999999999999998653322 22345566666654432 0
Q ss_pred -----HHHhhhhcCccEEEEcCcchhH-H-HHHHhhCCCCCCCEEEEEcCchhhH-HHHHHHhhcchhhH-hhHHHHHhh
Q 002535 207 -----KASFVNWLNYDGILVNSLEAKV-V-ISNIMQEPFKSLPLVWTIHEGTLAT-RARNYASSGQLELL-NDWKKVFNR 277 (911)
Q Consensus 207 -----l~~lI~~~kpDIIhvhs~~~~~-~-ia~L~~~~~~giPvV~tiH~~~L~~-~l~k~~~~~~d~lI-s~~~~~~~~ 277 (911)
+..++...+||+||+|++.... . .+.++. +..++|+|++.|+..... ............+. ...+..++.
T Consensus 82 ~~~~~~~~l~~~~~~Dvi~~~~~~~~~~~~~a~~~~-~~~~~~~V~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 160 (415)
T cd03816 82 QFFSLLWLLYKLRPADYILIQNPPSIPTLLIAWLYC-LLRRTKLIIDWHNYGYTILALKLGENHPLVRLAKWYEKLFGRL 160 (415)
T ss_pred HHHHHHHHHHhcCCCCEEEEeCCCCchHHHHHHHHH-HHhCCeEEEEcCCchHHHHhcccCCCCHHHHHHHHHHHHHhhc
Confidence 0112344689999998755421 2 233332 345789999999742110 00000000000111 123344566
Q ss_pred cceEEecCCccc--cccccCCCCCEEEeCCCCCCcccccccCchh-hHHHHH-------------hhCC-CCCCeEEEEE
Q 002535 278 ATVVVFPDYVLP--MMYSAFDAGNYYVIPGSPAKAWEADTNMDLY-NDTVRV-------------KMGF-KPDDLVIAIV 340 (911)
Q Consensus 278 a~~vvfpn~~l~--ii~~~id~~ki~VIpg~gVD~~~f~~~~~~~-k~~lR~-------------~lgi-~~d~~vIL~V 340 (911)
++.++..+.... +...+++.+++.+||| +. ...|.+..... .....+ ..+. +++..+++++
T Consensus 161 ad~ii~vS~~~~~~l~~~~~~~~ki~vI~N-g~-~~~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~ 238 (415)
T cd03816 161 ADYNLCVTKAMKEDLQQFNNWKIRATVLYD-RP-PEQFRPLPLEEKHELFLKLAKTFLTRELRIGAVQLSEERPALLVSS 238 (415)
T ss_pred CCEeeecCHHHHHHHHhhhccCCCeeecCC-CC-HHHceeCcHHHHHHHHHhccccccccccccccceecCCCceEEEEe
Confidence 777776665521 1223466789999996 53 33344433221 111111 0111 2345677778
Q ss_pred EeccccccccccHHHHHHHHHHhhhhcccCCCCCCCEEEEEEe-CCCCCchHHHHHHHHHHcCCCCccEEEcccc--ccH
Q 002535 341 GTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAAE--GDV 417 (911)
Q Consensus 341 Gsrl~~~KGiKg~dlLLeAl~~L~~~~p~~~~~~~~vkLvIVG-G~~~e~Y~~~Le~la~~lgL~~~~V~flG~v--~dV 417 (911)
| ++.+. ||++.+++|+..+.+.... ....++++|+|+| |+.. +.++++++++++++ .+.+.|++ +++
T Consensus 239 g-rl~~~---K~~~~li~A~~~l~~~~~~-~~~~~~i~l~ivG~G~~~----~~l~~~~~~~~l~~-~~~~~g~~~~~~~ 308 (415)
T cd03816 239 T-SWTPD---EDFGILLDALVAYEKSAAT-GPKLPKLLCIITGKGPLK----EKYLERIKELKLKK-VTIRTPWLSAEDY 308 (415)
T ss_pred c-cccCC---CCHHHHHHHHHHHHHhhcc-cccCCCEEEEEEecCccH----HHHHHHHHHcCCCc-EEEEcCcCCHHHH
Confidence 8 55555 9999999999998753210 0011239999999 8765 88899999999987 55555764 899
Q ss_pred HHHHHHcCeeEEcccC-CcCCccHHHHHHHHcCCCEEecCCCccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcH
Q 002535 418 DSVLNTADVVIYGSFL-EEQTFPEILVKALCFRKPIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISP 496 (911)
Q Consensus 418 ~~~L~~ADVfVlPS~~-E~qGFplvLLEAMA~G~PVIaTd~gGi~EiV~dg~nGlLv~~~D~eaLAeaI~~LLsd~~~p~ 496 (911)
..+|++||++++|+.. +..|+|++++||||||+|||+++.+|.+|+|.++.+|++++ |+++++++|.++++|...++
T Consensus 309 ~~~l~~aDv~v~~~~~~~~~~~p~~~~Eama~G~PVI~s~~~~~~eiv~~~~~G~lv~--d~~~la~~i~~ll~~~~~~~ 386 (415)
T cd03816 309 PKLLASADLGVSLHTSSSGLDLPMKVVDMFGCGLPVCALDFKCIDELVKHGENGLVFG--DSEELAEQLIDLLSNFPNRG 386 (415)
T ss_pred HHHHHhCCEEEEccccccccCCcHHHHHHHHcCCCEEEeCCCCHHHHhcCCCCEEEEC--CHHHHHHHHHHHHhcCCCHH
Confidence 9999999999975422 11279999999999999999999999999999999999994 89999999999998710136
Q ss_pred HHHHHHHHHHHHH
Q 002535 497 FARNIASIGRRSV 509 (911)
Q Consensus 497 ~~~~mg~~ar~~a 509 (911)
.+++|+++|++.+
T Consensus 387 ~~~~m~~~~~~~~ 399 (415)
T cd03816 387 KLNSLKKGAQEES 399 (415)
T ss_pred HHHHHHHHHHHhh
Confidence 7789999999888
No 54
>PLN02846 digalactosyldiacylglycerol synthase
Probab=99.96 E-value=4.1e-27 Score=271.29 Aligned_cols=340 Identities=11% Similarity=0.087 Sum_probs=232.4
Q ss_pred CCCEEEEEeCCC--CCChHHHHHHHHHHHHHHCC-CeEEEEEeCCCcc-----------------hh----hhhhcC---
Q 002535 143 RKPQLALVFPDL--LIDPQQLQMVTIAIALREIG-YAIQVYSLEDGRA-----------------HE----VWRNIG--- 195 (911)
Q Consensus 143 rkprIalI~~~L--~~GGae~~v~~LAk~L~~~G-yeV~V~t~~~g~~-----------------~~----~~~~~g--- 195 (911)
.|++|+++.... ..+|.......++..|.++| |+|+|+.+..... .+ .|....
T Consensus 3 ~~mrIaivTdt~lP~vnGva~s~~~~a~~L~~~G~heV~vvaP~~~~~~~~~~~~~~~~f~~~~~~e~~~~~~~~~~v~r 82 (462)
T PLN02846 3 KKQHIAIFTTASLPWMTGTAVNPLFRAAYLAKDGDREVTLVIPWLSLKDQKLVYPNKITFSSPSEQEAYVRQWLEERISF 82 (462)
T ss_pred CCCEEEEEEcCCCCCCCCeeccHHHHHHHHHhcCCcEEEEEecCCccccccccccccccccCchhhhhhhhhhccCeEEE
Confidence 579999999877 47999999999999999999 7999998854210 00 000001
Q ss_pred ---ceEE-----------EeccchhHHHhhhhcCccEEEEcCcchhHHH--HHHhhCCCCCCCEEEEEcCchhhHHHHHH
Q 002535 196 ---VPVA-----------ILQTGREKASFVNWLNYDGILVNSLEAKVVI--SNIMQEPFKSLPLVWTIHEGTLATRARNY 259 (911)
Q Consensus 196 ---i~v~-----------~l~~~~~l~~lI~~~kpDIIhvhs~~~~~~i--a~L~~~~~~giPvV~tiH~~~L~~~l~k~ 259 (911)
+++. .+.....+...++..+|||||++++...+.+ +....+ ..+ ++|.++|.+...+- ..+
T Consensus 83 ~~s~~~p~yp~r~~~~~r~~~~~~~i~~~l~~~~pDVIHv~tP~~LG~~~~g~~~~~-k~~-~vV~tyHT~y~~Y~-~~~ 159 (462)
T PLN02846 83 LPKFSIKFYPGKFSTDKRSILPVGDISETIPDEEADIAVLEEPEHLTWYHHGKRWKT-KFR-LVIGIVHTNYLEYV-KRE 159 (462)
T ss_pred ecccccccCcccccccccccCChHHHHHHHHhcCCCEEEEcCchhhhhHHHHHHHHh-cCC-cEEEEECCChHHHH-HHh
Confidence 0110 0011233566678899999999999986554 333333 223 48889998543221 111
Q ss_pred H----hhcchhhHhhHHHHHhhcceEEecCCccccccccCCCCCEEEeCCCCCCcccccccCchhhHHHHHhhCCCCC--
Q 002535 260 A----SSGQLELLNDWKKVFNRATVVVFPDYVLPMMYSAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPD-- 333 (911)
Q Consensus 260 ~----~~~~d~lIs~~~~~~~~a~~vvfpn~~l~ii~~~id~~ki~VIpg~gVD~~~f~~~~~~~k~~lR~~lgi~~d-- 333 (911)
. .......+..+... ..++.++.++..... +. ......+ .|||...|.+ ..+. .++... +.+
T Consensus 160 ~~g~~~~~l~~~~~~~~~r-~~~d~vi~pS~~~~~----l~-~~~i~~v-~GVd~~~f~~---~~~~-~~~~~~-~~~~~ 227 (462)
T PLN02846 160 KNGRVKAFLLKYINSWVVD-IYCHKVIRLSAATQD----YP-RSIICNV-HGVNPKFLEI---GKLK-LEQQKN-GEQAF 227 (462)
T ss_pred ccchHHHHHHHHHHHHHHH-HhcCEEEccCHHHHH----Hh-hCEEecC-ceechhhcCC---Cccc-HhhhcC-CCCCc
Confidence 0 11111111111111 125666666543211 11 1233323 5899854432 2211 222222 333
Q ss_pred CeEEEEEEeccccccccccHHHHHHHHHHhhhhcccCCCCCCCEEEEEEe-CCCCCchHHHHHHHHHHcCCCCccEEEcc
Q 002535 334 DLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMA 412 (911)
Q Consensus 334 ~~vIL~VGsrl~~~KGiKg~dlLLeAl~~L~~~~p~~~~~~~~vkLvIVG-G~~~e~Y~~~Le~la~~lgL~~~~V~flG 412 (911)
.+.++|+| ++... ||++.+++|+..+.+..|+ ++|+|+| |+.. +.+++.++++++.. ++ |.|
T Consensus 228 ~~~~l~vG-RL~~e---K~~~~Li~a~~~l~~~~~~-------~~l~ivGdGp~~----~~L~~~a~~l~l~~-~v-f~G 290 (462)
T PLN02846 228 TKGAYYIG-KMVWS---KGYKELLKLLHKHQKELSG-------LEVDLYGSGEDS----DEVKAAAEKLELDV-RV-YPG 290 (462)
T ss_pred ceEEEEEe-cCccc---CCHHHHHHHHHHHHhhCCC-------eEEEEECCCccH----HHHHHHHHhcCCcE-EE-ECC
Confidence 24689999 55555 9999999999999887777 9999999 9887 88999999998875 44 888
Q ss_pred ccccHHHHHHHcCeeEEcccCCcCCccHHHHHHHHcCCCEEecCCCccccccccCccEEEEcCCCHHHHHHHHHHHHHcC
Q 002535 413 AEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITNG 492 (911)
Q Consensus 413 ~v~dV~~~L~~ADVfVlPS~~E~qGFplvLLEAMA~G~PVIaTd~gGi~EiV~dg~nGlLv~~~D~eaLAeaI~~LLsd~ 492 (911)
.. +..++|..+|+||+||..| |||++++||||||+|||+++.++ .+++.++.||++++ |+++++++|.+++++
T Consensus 291 ~~-~~~~~~~~~DvFv~pS~~E--t~g~v~lEAmA~G~PVVa~~~~~-~~~v~~~~ng~~~~--~~~~~a~ai~~~l~~- 363 (462)
T PLN02846 291 RD-HADPLFHDYKVFLNPSTTD--VVCTTTAEALAMGKIVVCANHPS-NEFFKQFPNCRTYD--DGKGFVRATLKALAE- 363 (462)
T ss_pred CC-CHHHHHHhCCEEEECCCcc--cchHHHHHHHHcCCcEEEecCCC-cceeecCCceEecC--CHHHHHHHHHHHHcc-
Confidence 64 5668999999999999999 79999999999999999999998 59999999999984 899999999999986
Q ss_pred CCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 002535 493 KISPFARNIASIGRRSVKNLMALETIEGYAMLLENV 528 (911)
Q Consensus 493 ~~p~~~~~mg~~ar~~ae~Fs~e~ia~~y~~Lye~v 528 (911)
+. ..++.+++ ++|||+.+++++.++|+--
T Consensus 364 --~~--~~~~~~a~---~~~SWe~~~~~l~~~~~~~ 392 (462)
T PLN02846 364 --EP--APLTDAQR---HELSWEAATERFLRVADLD 392 (462)
T ss_pred --Cc--hhHHHHHH---HhCCHHHHHHHHHHHhccC
Confidence 43 22332222 5899999999999999754
No 55
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=99.96 E-value=4.5e-27 Score=270.73 Aligned_cols=345 Identities=16% Similarity=0.066 Sum_probs=233.3
Q ss_pred EEEEEeCCCCCC-hHHHHHHHHHHHHHHC--CCeEEEEEeCCCcch-hhh----hh------cCceEEEec-c-------
Q 002535 146 QLALVFPDLLID-PQQLQMVTIAIALREI--GYAIQVYSLEDGRAH-EVW----RN------IGVPVAILQ-T------- 203 (911)
Q Consensus 146 rIalI~~~L~~G-Gae~~v~~LAk~L~~~--GyeV~V~t~~~g~~~-~~~----~~------~gi~v~~l~-~------- 203 (911)
.+++++|+++.| |+|+++...+.+|++. +++|+|++....... ... +. -++.+..+. .
T Consensus 2 ~~~f~hp~~~~ggg~ervl~~a~~~l~~~~~~~~v~i~t~~~~~~~~~~l~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 81 (419)
T cd03806 2 TVGFFHPYCNAGGGGERVLWCAVRALQKRYPNNIVVIYTGDLDATPEEILEKVESRFNIELDRPRIVFFLLKYRKLVEAS 81 (419)
T ss_pred eEEEECCCCCCCCCchHHHHHHHHHHHHhCCCcEEEEECCCCCCCHHHHHHHHHHhcCeecCCCceEEEEecceeeeccc
Confidence 478999999988 9999999999999998 899999997654322 110 11 112211210 0
Q ss_pred -ch----------hHH---HhhhhcCccEEEEcCcchhHHHHHHhhCCCCCCCEEEEEcCchhh-HHHHHHH--------
Q 002535 204 -GR----------EKA---SFVNWLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLA-TRARNYA-------- 260 (911)
Q Consensus 204 -~~----------~l~---~lI~~~kpDIIhvhs~~~~~~ia~L~~~~~~giPvV~tiH~~~L~-~~l~k~~-------- 260 (911)
.. .+. ..+...+||||+.+...+.+..... .+.++|+|+.+|-.... ..+.+..
T Consensus 82 ~~~r~~~~~~~~~~~~~~~~~~~~~~pDv~i~~~g~~~~~~~~~---~~~~~~~i~y~h~P~~~~d~l~~~~~~~~~~~~ 158 (419)
T cd03806 82 TYPRFTLLGQALGSMILGLEALLKLVPDIFIDTMGYPFTYPLVR---LLGGCPVGAYVHYPTISTDMLQKVRSREASYNN 158 (419)
T ss_pred cCCceeeHHHHHHHHHHHHHHHHhcCCCEEEEcCCcccHHHHHH---HhcCCeEEEEecCCcchHHHHHHHhhccccccC
Confidence 00 010 1122347999998875542222211 13467999999943111 1111100
Q ss_pred -----hhc---chhhH------hhHHHHHhhcceEEecCCcccc-ccccC-CCCCEEEeCCCCCCcccccccCchhhHHH
Q 002535 261 -----SSG---QLELL------NDWKKVFNRATVVVFPDYVLPM-MYSAF-DAGNYYVIPGSPAKAWEADTNMDLYNDTV 324 (911)
Q Consensus 261 -----~~~---~d~lI------s~~~~~~~~a~~vvfpn~~l~i-i~~~i-d~~ki~VIpg~gVD~~~f~~~~~~~k~~l 324 (911)
.+. ..+.+ ..+......++.++.++..... +.... ...++.+|++ |+|...+.+...
T Consensus 159 ~~~~~~~~~~~~~k~~y~~~~~~~~~~~~~~aD~ii~~S~~~~~~~~~~~~~~~~~~vi~~-gvd~~~~~~~~~------ 231 (419)
T cd03806 159 SATIARSPVLSKAKLLYYRLFAFLYGLAGSFADVVMVNSTWTRNHIRSLWKRNTKPSIVYP-PCDVEELLKLPL------ 231 (419)
T ss_pred ccchhccchHHHHHHHHHHHHHHHHHHHhhcCCEEEECCHHHHHHHHHHhCcCCCcEEEcC-CCCHHHhccccc------
Confidence 000 00111 1345566778877776655221 11111 2247888884 788744332211
Q ss_pred HHhhCCCCCCeEEEEEEeccccccccccHHHHHHHHHHhhhhcccCCCCCCCEEEEEEe-CCCC--CchHHHHHHHHHHc
Q 002535 325 RVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILS-GDST--SNYSVVIEAIAHNL 401 (911)
Q Consensus 325 R~~lgi~~d~~vIL~VGsrl~~~KGiKg~dlLLeAl~~L~~~~p~~~~~~~~vkLvIVG-G~~~--e~Y~~~Le~la~~l 401 (911)
....+.++++++| ++.+. ||++.+++|+..+.++.|+ ...++++++|+| |... .+|.+.++++++++
T Consensus 232 ----~~~~~~~~il~vg-r~~~~---K~~~~li~A~~~l~~~~~~--~~~~~~~lvivG~~~~~~~~~~~~~L~~~~~~l 301 (419)
T cd03806 232 ----DEKTRENQILSIA-QFRPE---KNHPLQLRAFAKLLKRLPE--EIKEKIKLVLIGSCRNEDDEKRVEDLKLLAKEL 301 (419)
T ss_pred ----ccccCCcEEEEEE-eecCC---CCHHHHHHHHHHHHHhCcc--cccCceEEEEEcCCCCcccHHHHHHHHHHHHHh
Confidence 1234567999999 56665 9999999999999887653 112349999999 4322 24778899999999
Q ss_pred CCCCccEEEcccc--ccHHHHHHHcCeeEEcccCCcCCccHHHHHHHHcCCCEEecCCCcc-ccccc---cCccEEEEcC
Q 002535 402 HYPLGVVKHMAAE--GDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSNI-RKYVD---DRVNGYLFPK 475 (911)
Q Consensus 402 gL~~~~V~flG~v--~dV~~~L~~ADVfVlPS~~E~qGFplvLLEAMA~G~PVIaTd~gGi-~EiV~---dg~nGlLv~~ 475 (911)
++++ +|+|+|.. +++.++|+.||++|+||..| +||++++||||||+|||+++.||. .+++. ++.+|++++
T Consensus 302 ~l~~-~V~f~g~v~~~~l~~~l~~adv~v~~s~~E--~Fgi~~lEAMa~G~pvIa~~~ggp~~~iv~~~~~g~~G~l~~- 377 (419)
T cd03806 302 GLED-KVEFVVNAPFEELLEELSTASIGLHTMWNE--HFGIGVVEYMAAGLIPLAHASGGPLLDIVVPWDGGPTGFLAS- 377 (419)
T ss_pred CCCC-eEEEecCCCHHHHHHHHHhCeEEEECCccC--CcccHHHHHHHcCCcEEEEcCCCCchheeeccCCCCceEEeC-
Confidence 9988 89999975 88999999999999999988 799999999999999999999875 57887 899999985
Q ss_pred CCHHHHHHHHHHHHHcCCCcHHHH-HHHHHHHHHHHhcCHHHHH
Q 002535 476 ENIKALTHIILQVITNGKISPFAR-NIASIGRRSVKNLMALETI 518 (911)
Q Consensus 476 ~D~eaLAeaI~~LLsd~~~p~~~~-~mg~~ar~~ae~Fs~e~ia 518 (911)
|+++++++|.+++++ ++... .+++++++..++|+++...
T Consensus 378 -d~~~la~ai~~ll~~---~~~~~~~~~~~~~~~~~~fs~~~f~ 417 (419)
T cd03806 378 -TAEEYAEAIEKILSL---SEEERLRIRRAARSSVKRFSDEEFE 417 (419)
T ss_pred -CHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHhhCHHHhc
Confidence 999999999999997 66544 5655555545889998764
No 56
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=99.95 E-value=1.1e-26 Score=272.40 Aligned_cols=277 Identities=15% Similarity=0.138 Sum_probs=200.9
Q ss_pred hhcCccEEEEcCcchhHHHHHHhhCCCCCCCEEEEEcCchhhHHHHHHHhhcchhhHhhHHHHHhhcceEEecCCccc--
Q 002535 212 NWLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRATVVVFPDYVLP-- 289 (911)
Q Consensus 212 ~~~kpDIIhvhs~~~~~~ia~L~~~~~~giPvV~tiH~~~L~~~l~k~~~~~~d~lIs~~~~~~~~a~~vvfpn~~l~-- 289 (911)
...++||+|++.+... ..+ +. .....+|++.++|+..........................+.++.++.++....
T Consensus 208 ~~~~~di~i~dr~~~~-~~~-~~-~~~~~~~~v~~lH~~h~~~~~~~~~~~~~~~~y~~~~~~~~~~D~iI~~S~~~~~~ 284 (500)
T TIGR02918 208 NLTKKDIIILDRSTGI-GQA-VL-ENKGPAKLGVVVHAEHFSESATNETYILWNNYYEYQFSNADYIDFFITATDIQNQI 284 (500)
T ss_pred hCCCCCEEEEcCCccc-chH-HH-hcCCCceEEEEEChhhhcCccCcchhHHHHHHHHHHHhchhhCCEEEECCHHHHHH
Confidence 3458999999886652 222 22 235578999999974322110000000000000000111234455555554311
Q ss_pred cc--c--ccCCCCCEEEeCCCCCCcccccccCchhhHHHHHhhCCCCCCeEEEEEEeccccccccccHHHHHHHHHHhhh
Q 002535 290 MM--Y--SAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFS 365 (911)
Q Consensus 290 ii--~--~~id~~ki~VIpg~gVD~~~f~~~~~~~k~~lR~~lgi~~d~~vIL~VGsrl~~~KGiKg~dlLLeAl~~L~~ 365 (911)
+. . ......++.+||+ |++...+. +. ...+...|+++| ++.+. ||++.+++|+..+.+
T Consensus 285 l~~~~~~~~~~~~ki~viP~-g~~~~~~~---~~----------~~r~~~~il~vG-rl~~~---Kg~~~li~A~~~l~~ 346 (500)
T TIGR02918 285 LKNQFKKYYNIEPRIYTIPV-GSLDELQY---PE----------QERKPFSIITAS-RLAKE---KHIDWLVKAVVKAKK 346 (500)
T ss_pred HHHHhhhhcCCCCcEEEEcC-CCcccccC---cc----------cccCCeEEEEEe-ccccc---cCHHHHHHHHHHHHh
Confidence 11 1 1122467889995 55432111 10 112346899999 55555 999999999999998
Q ss_pred hcccCCCCCCCEEEEEEe-CCCCCchHHHHHHHHHHcCCCCccEEEccccccHHHHHHHcCeeEEcccCCcCCccHHHHH
Q 002535 366 EVSVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVK 444 (911)
Q Consensus 366 ~~p~~~~~~~~vkLvIVG-G~~~e~Y~~~Le~la~~lgL~~~~V~flG~v~dV~~~L~~ADVfVlPS~~E~qGFplvLLE 444 (911)
+.|+ ++|+|+| |+.. +.++++++++++.+ +|.|+|+. ++.++|+.||++|+||..| |||++++|
T Consensus 347 ~~p~-------~~l~i~G~G~~~----~~l~~~i~~~~l~~-~V~f~G~~-~~~~~~~~adv~v~pS~~E--gfgl~~lE 411 (500)
T TIGR02918 347 SVPE-------LTFDIYGEGGEK----QKLQKIINENQAQD-YIHLKGHR-NLSEVYKDYELYLSASTSE--GFGLTLME 411 (500)
T ss_pred hCCC-------eEEEEEECchhH----HHHHHHHHHcCCCC-eEEEcCCC-CHHHHHHhCCEEEEcCccc--cccHHHHH
Confidence 8888 9999999 7765 78999999999988 99999976 8999999999999999998 79999999
Q ss_pred HHHcCCCEEecCCC-ccccccccCccEEEEcCC----C----HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhcCHH
Q 002535 445 ALCFRKPIIAPDLS-NIRKYVDDRVNGYLFPKE----N----IKALTHIILQVITNGKISPFARNIASIGRRSVKNLMAL 515 (911)
Q Consensus 445 AMA~G~PVIaTd~g-Gi~EiV~dg~nGlLv~~~----D----~eaLAeaI~~LLsd~~~p~~~~~mg~~ar~~ae~Fs~e 515 (911)
|||||+|||+++++ |.+|+|.+|.+|++++++ | +++||++|.+++ + ++.+.+|+++|++.+++|+++
T Consensus 412 Ama~G~PVI~~dv~~G~~eiI~~g~nG~lv~~~~~~~d~~~~~~~la~~I~~ll-~---~~~~~~~~~~a~~~a~~fs~~ 487 (500)
T TIGR02918 412 AVGSGLGMIGFDVNYGNPTFIEDNKNGYLIPIDEEEDDEDQIITALAEKIVEYF-N---SNDIDAFHEYSYQIAEGFLTA 487 (500)
T ss_pred HHHhCCCEEEecCCCCCHHHccCCCCEEEEeCCccccchhHHHHHHHHHHHHHh-C---hHHHHHHHHHHHHHHHhcCHH
Confidence 99999999999986 899999999999999843 3 899999999999 4 467889999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 002535 516 ETIEGYAMLLENV 528 (911)
Q Consensus 516 ~ia~~y~~Lye~v 528 (911)
.++++|.++++++
T Consensus 488 ~v~~~w~~ll~~~ 500 (500)
T TIGR02918 488 NIIEKWKKLVREV 500 (500)
T ss_pred HHHHHHHHHHhhC
Confidence 9999999998763
No 57
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=99.95 E-value=1e-25 Score=256.90 Aligned_cols=332 Identities=14% Similarity=0.140 Sum_probs=222.1
Q ss_pred CCChHHHHHHHHHHHHHHCCCeEEEEEeCCCcc--h--hhhhhcCceEEEec----------------------------
Q 002535 155 LIDPQQLQMVTIAIALREIGYAIQVYSLEDGRA--H--EVWRNIGVPVAILQ---------------------------- 202 (911)
Q Consensus 155 ~~GGae~~v~~LAk~L~~~GyeV~V~t~~~g~~--~--~~~~~~gi~v~~l~---------------------------- 202 (911)
..+|....+.+++++|.+. |+|++++..+.+. . .......-.+..++
T Consensus 12 ~~~G~~~r~~~~~~~L~~~-~~v~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~ 90 (397)
T TIGR03087 12 PNKGDKIRSFHLLRHLAAR-HRVHLGTFVDDPEDWQYAAALRPLCEEVCVVPLDPRVARLRSLLGLLTGEPLSLPYYRSR 90 (397)
T ss_pred CCCCCcEeHHHHHHHHHhc-CcEEEEEeCCCcccHHHHHHHHHHhheeEEeecCcHHHHHHHHhhhcCCCCCcchhhCCH
Confidence 3456688999999999775 8999999875321 1 11111111111111
Q ss_pred -cchhHHHhhhhcCccEEEEcCcchhHHHHHHhhCCCCCCCEEEEEcCch--hhHHHH-------HHHhh-cchhhHhhH
Q 002535 203 -TGREKASFVNWLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGT--LATRAR-------NYASS-GQLELLNDW 271 (911)
Q Consensus 203 -~~~~l~~lI~~~kpDIIhvhs~~~~~~ia~L~~~~~~giPvV~tiH~~~--L~~~l~-------k~~~~-~~d~lIs~~ 271 (911)
..+.+...++..++|+||+++.... ..+.....++|+|++.|+.. ...... +.... ....+....
T Consensus 91 ~~~~~l~~~~~~~~~D~v~~~~~~~~----~~~~~~~~~~p~i~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 166 (397)
T TIGR03087 91 RLARWVNALLAAEPVDAIVVFSSAMA----QYVTPHVRGVPRIVDFVDVDSDKWLQYARTKRWPLRWIYRREGRLLLAYE 166 (397)
T ss_pred HHHHHHHHHHhhCCCCEEEEeccccc----eeccccccCCCeEeehhhHHHHHHHHHHhccCcchhHHHHHHHHHHHHHH
Confidence 0112233455689999999986542 11211245789999999621 111110 00000 011122244
Q ss_pred HHHHhhcceEEecCCcccccc---ccCCCCCEEEeCCCCCCcccccccCchhhHHHHHhhCCCCCCeEEEEEEecccccc
Q 002535 272 KKVFNRATVVVFPDYVLPMMY---SAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRG 348 (911)
Q Consensus 272 ~~~~~~a~~vvfpn~~l~ii~---~~id~~ki~VIpg~gVD~~~f~~~~~~~k~~lR~~lgi~~d~~vIL~VGsrl~~~K 348 (911)
+..++.++.+++.+....... ......++.+|| +|+|...|.+.... .....++.++++++|+ +.+.
T Consensus 167 ~~~~~~ad~vi~~S~~~~~~l~~~~~~~~~~v~vip-ngvd~~~f~~~~~~-------~~~~~~~~~~ilf~G~-l~~~- 236 (397)
T TIGR03087 167 RAIAARFDAATFVSRAEAELFRRLAPEAAGRITAFP-NGVDADFFSPDRDY-------PNPYPPGKRVLVFTGA-MDYW- 236 (397)
T ss_pred HHHHhhCCeEEEcCHHHHHHHHHhCCCCCCCeEEee-cccchhhcCCCccc-------cCCCCCCCcEEEEEEe-cCCc-
Confidence 556778888888766522211 123456889998 49998655432211 0112345578999994 5554
Q ss_pred ccccHHHHH----HHHHHhhhhcccCCCCCCCEEEEEEe-CCCCCchHHHHHHHHHHcCCCCccEEEccccccHHHHHHH
Q 002535 349 LWLEHALIL----RALLPLFSEVSVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNT 423 (911)
Q Consensus 349 GiKg~dlLL----eAl~~L~~~~p~~~~~~~~vkLvIVG-G~~~e~Y~~~Le~la~~lgL~~~~V~flG~v~dV~~~L~~ 423 (911)
||++.++ +++..+.++.|+ ++|+|+| |+. ..+++ ++..+ +|+|+|+++++..+|+.
T Consensus 237 --k~~~~l~~~~~~~~~~l~~~~p~-------~~l~ivG~g~~-----~~~~~----l~~~~-~V~~~G~v~~~~~~~~~ 297 (397)
T TIGR03087 237 --PNIDAVVWFAERVFPAVRARRPA-------AEFYIVGAKPS-----PAVRA----LAALP-GVTVTGSVADVRPYLAH 297 (397)
T ss_pred --cCHHHHHHHHHHHHHHHHHHCCC-------cEEEEECCCCh-----HHHHH----hccCC-CeEEeeecCCHHHHHHh
Confidence 7877776 455566666677 9999999 653 33333 33344 69999999999999999
Q ss_pred cCeeEEcccCCcCCccHHHHHHHHcCCCEEecCCCccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHH
Q 002535 424 ADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIAS 503 (911)
Q Consensus 424 ADVfVlPS~~E~qGFplvLLEAMA~G~PVIaTd~gGi~EiV~dg~nGlLv~~~D~eaLAeaI~~LLsd~~~p~~~~~mg~ 503 (911)
||++|+||...+ |+|++++||||||+|||+|+.++. .+...+.+|++++ +|+++++++|.++++| ++.+++|++
T Consensus 298 adv~v~Ps~~~e-G~~~~~lEAma~G~PVV~t~~~~~-~i~~~~~~g~lv~-~~~~~la~ai~~ll~~---~~~~~~~~~ 371 (397)
T TIGR03087 298 AAVAVAPLRIAR-GIQNKVLEAMAMAKPVVASPEAAE-GIDALPGAELLVA-ADPADFAAAILALLAN---PAEREELGQ 371 (397)
T ss_pred CCEEEecccccC-CcccHHHHHHHcCCCEEecCcccc-cccccCCcceEeC-CCHHHHHHHHHHHHcC---HHHHHHHHH
Confidence 999999997533 899999999999999999997542 3333445699987 8999999999999999 999999999
Q ss_pred HHHHHH-HhcCHHHHHHHHHHHHH
Q 002535 504 IGRRSV-KNLMALETIEGYAMLLE 526 (911)
Q Consensus 504 ~ar~~a-e~Fs~e~ia~~y~~Lye 526 (911)
+|++.+ ++|+|+.+++++.++|+
T Consensus 372 ~ar~~v~~~fsw~~~~~~~~~~l~ 395 (397)
T TIGR03087 372 AARRRVLQHYHWPRNLARLDALLE 395 (397)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhc
Confidence 999999 67999999999998875
No 58
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=99.95 E-value=3.2e-25 Score=254.42 Aligned_cols=338 Identities=15% Similarity=0.071 Sum_probs=233.8
Q ss_pred EEEEeCCCCCChHHHHHHHHHHHHHHCCCeEEEEEeCCCcchhhhhhc---CceEEEec-------------------cc
Q 002535 147 LALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNI---GVPVAILQ-------------------TG 204 (911)
Q Consensus 147 IalI~~~L~~GGae~~v~~LAk~L~~~GyeV~V~t~~~g~~~~~~~~~---gi~v~~l~-------------------~~ 204 (911)
+.+++...-.+-.|..+..-.+.|.+.+.+|.++...-++........ ++.+.... +.
T Consensus 2 ~~l~t~~~p~~~~~~f~~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 81 (407)
T cd04946 2 LILLTNTFPGAKGESFIEPEIKYLSKSFDKIIILPTNVGKEREKVRPNGVSNIIISNYRQDKSRAKLIFLALSVFSLPFY 81 (407)
T ss_pred EEEEecCCCCCCcccccHHHHHHHHhcCCEEEEEecccccccccCCCccccceEEeecccchhhHHHHHHHHHhhhHHHH
Confidence 456666666777888999999999999999999876543311111110 11111111 00
Q ss_pred ---------h-----hH----HHh-------------h----hhcCccEEEEcCcchhHHHHHHhhCCCCCCCEEEEEcC
Q 002535 205 ---------R-----EK----ASF-------------V----NWLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHE 249 (911)
Q Consensus 205 ---------~-----~l----~~l-------------I----~~~kpDIIhvhs~~~~~~ia~L~~~~~~giPvV~tiH~ 249 (911)
. .. ... + ...++|++|.+.....+....++.++....++|.+.|+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~sy~~~~~~~~~~~l~~~~~~~~~i~~~Hg 161 (407)
T cd04946 82 KELLKKLKRRRKNIKYFLLLLYFIKRSILLKLKYLHLLIYNSIDGQGTVFYSYWLHETAYALALLKKEYLRKRVISRAHG 161 (407)
T ss_pred HHHHHhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCceEEEEecCchHHHHHHHHHHhcCCceEEEEecc
Confidence 0 00 000 0 12456788877665543444444443333459999998
Q ss_pred chhhHHHHHHHhhcchhhHhhHHHHHhhcceEEecCCccc-cccc--cCCCCCEEEeCCCCCCcccccccCchhhHHHHH
Q 002535 250 GTLATRARNYASSGQLELLNDWKKVFNRATVVVFPDYVLP-MMYS--AFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRV 326 (911)
Q Consensus 250 ~~L~~~l~k~~~~~~d~lIs~~~~~~~~a~~vvfpn~~l~-ii~~--~id~~ki~VIpg~gVD~~~f~~~~~~~k~~lR~ 326 (911)
..++.... . .......+..+..++.+++.+.... .+.. ....+++.+++ +|++...+...
T Consensus 162 ~d~~~~~~---~---~~~~~~~~~~~~~~d~ii~~S~~~~~~l~~~~~~~~~ki~vi~-~gv~~~~~~~~---------- 224 (407)
T cd04946 162 YDLYEDRY---P---SGYIPLRRYLLSSLDAVFPCSEQGRNYLQKRYPAYKEKIKVSY-LGVSDPGIISK---------- 224 (407)
T ss_pred chhhhhhc---c---ccchHHHHHHHhcCCEEEECCHHHHHHHHHHCCCccccEEEEE-CCcccccccCC----------
Confidence 55432110 0 0001112233556676666655411 1111 23346788888 47776332111
Q ss_pred hhCCCCCCeEEEEEEeccccccccccHHHHHHHHHHhhhhcccCCCCCCCEEEEEEe-CCCCCchHHHHHHHHHHcCCCC
Q 002535 327 KMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPL 405 (911)
Q Consensus 327 ~lgi~~d~~vIL~VGsrl~~~KGiKg~dlLLeAl~~L~~~~p~~~~~~~~vkLvIVG-G~~~e~Y~~~Le~la~~lgL~~ 405 (911)
....+.+.++++| ++.+. ||++.+++|+..+.+++|+ .+++++++| |+.. +.+++++++++..+
T Consensus 225 --~~~~~~~~il~~G-rl~~~---Kg~~~li~a~~~l~~~~p~-----~~l~~~iiG~g~~~----~~l~~~~~~~~~~~ 289 (407)
T cd04946 225 --PSKDDTLRIVSCS-YLVPV---KRVDLIIKALAALAKARPS-----IKIKWTHIGGGPLE----DTLKELAESKPENI 289 (407)
T ss_pred --CCCCCCEEEEEee-ccccc---cCHHHHHHHHHHHHHhCCC-----ceEEEEEEeCchHH----HHHHHHHHhcCCCc
Confidence 1234567899999 55555 9999999999999988764 237788899 6665 77888888777776
Q ss_pred ccEEEcccc--ccHHHHHHH--cCeeEEcccCCcCCccHHHHHHHHcCCCEEecCCCccccccccCccEEEEcC-CCHHH
Q 002535 406 GVVKHMAAE--GDVDSVLNT--ADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSNIRKYVDDRVNGYLFPK-ENIKA 480 (911)
Q Consensus 406 ~~V~flG~v--~dV~~~L~~--ADVfVlPS~~E~qGFplvLLEAMA~G~PVIaTd~gGi~EiV~dg~nGlLv~~-~D~ea 480 (911)
+|+|+|++ +++..+|+. +|++++||..| |+|++++||||||+|||+|++||++|++.++.+|+++++ +|+++
T Consensus 290 -~V~f~G~v~~~e~~~~~~~~~~~v~v~~S~~E--g~p~~llEAma~G~PVIas~vgg~~e~i~~~~~G~l~~~~~~~~~ 366 (407)
T cd04946 290 -SVNFTGELSNSEVYKLYKENPVDVFVNLSESE--GLPVSIMEAMSFGIPVIATNVGGTPEIVDNGGNGLLLSKDPTPNE 366 (407)
T ss_pred -eEEEecCCChHHHHHHHhhcCCCEEEeCCccc--cccHHHHHHHHcCCCEEeCCCCCcHHHhcCCCcEEEeCCCCCHHH
Confidence 89999988 578899976 78999999998 799999999999999999999999999999999999987 48999
Q ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHH-HhcCHHHHHHHHH
Q 002535 481 LTHIILQVITNGKISPFARNIASIGRRSV-KNLMALETIEGYA 522 (911)
Q Consensus 481 LAeaI~~LLsd~~~p~~~~~mg~~ar~~a-e~Fs~e~ia~~y~ 522 (911)
++++|.++++| ++.+.+|+++|++.+ ++|+++...++|.
T Consensus 367 la~~I~~ll~~---~~~~~~m~~~ar~~~~~~f~~~~~~~~~~ 406 (407)
T cd04946 367 LVSSLSKFIDN---EEEYQTMREKAREKWEENFNASKNYREFA 406 (407)
T ss_pred HHHHHHHHHhC---HHHHHHHHHHHHHHHHHHcCHHHhHHHhc
Confidence 99999999999 999999999999999 6799999988774
No 59
>KOG1111 consensus N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Lipid transport and metabolism]
Probab=99.94 E-value=8e-26 Score=243.66 Aligned_cols=344 Identities=15% Similarity=0.150 Sum_probs=242.9
Q ss_pred EEEEEeCCC--CCChHHHHHHHHHHHHHHCCCeEEEEEeCCCcchhh-hhhcCceEEEeccc---------------hhH
Q 002535 146 QLALVFPDL--LIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEV-WRNIGVPVAILQTG---------------REK 207 (911)
Q Consensus 146 rIalI~~~L--~~GGae~~v~~LAk~L~~~GyeV~V~t~~~g~~~~~-~~~~gi~v~~l~~~---------------~~l 207 (911)
++++|.+-+ +.||.|.++..+.+.|.++||.|.+++...|+.... ....+..++.++.. .-+
T Consensus 2 ~i~mVsdff~P~~ggveshiy~lSq~li~lghkVvvithayg~r~girylt~glkVyylp~~v~~n~tT~ptv~~~~Pll 81 (426)
T KOG1111|consen 2 RILMVSDFFYPSTGGVESHIYALSQCLIRLGHKVVVITHAYGNRVGIRYLTNGLKVYYLPAVVGYNQTTFPTVFSDFPLL 81 (426)
T ss_pred cceeeCcccccCCCChhhhHHHhhcchhhcCCeEEEEeccccCccceeeecCCceEEEEeeeeeecccchhhhhccCccc
Confidence 456666655 679999999999999999999999999877653211 11222334333321 112
Q ss_pred HHhhhhcCccEEEEcCcchhHHHHHHhhCCCCCCCEEEEEcCchhh--HHHHHHHhhcchhhHhhHHHHHhhcceEEecC
Q 002535 208 ASFVNWLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLA--TRARNYASSGQLELLNDWKKVFNRATVVVFPD 285 (911)
Q Consensus 208 ~~lI~~~kpDIIhvhs~~~~~~ia~L~~~~~~giPvV~tiH~~~L~--~~l~k~~~~~~d~lIs~~~~~~~~a~~vvfpn 285 (911)
+..+...+..+||-|+++....--.++..+..|.++|+|-|. ++ ..+... ...++...+-....++-.+...+
T Consensus 82 r~i~lrE~I~ivhghs~fS~lahe~l~hartMGlktVfTdHS--lfGfad~~si---~~n~ll~~sL~~id~~IcVshts 156 (426)
T KOG1111|consen 82 RPILLRERIEIVHGHSPFSYLAHEALMHARTMGLKTVFTDHS--LFGFADIGSI---LTNKLLPLSLANIDRIICVSHTS 156 (426)
T ss_pred chhhhhhceEEEecCChHHHHHHHHHHHHHhcCceEEEeccc--cccccchhhh---hhcceeeeeecCCCcEEEEeecC
Confidence 333444689999999988743333444444678999999995 22 111111 11111111111111222233333
Q ss_pred CccccccccCCCCCEEEeCCCCCCcccccccCchhhHHHHHhhCCCCCC-eEEEEEEeccccccccccHHHHHHHHHHhh
Q 002535 286 YVLPMMYSAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDD-LVIAIVGTQFMYRGLWLEHALILRALLPLF 364 (911)
Q Consensus 286 ~~l~ii~~~id~~ki~VIpg~gVD~~~f~~~~~~~k~~lR~~lgi~~d~-~vIL~VGsrl~~~KGiKg~dlLLeAl~~L~ 364 (911)
+.-.+....++++++.+||| .++...|.|-+.. .+..+ ..|..++ ++-++ ||.|++++++..+.
T Consensus 157 kentvlr~~L~p~kvsvIPn-Av~~~~f~P~~~~----------~~S~~i~~ivv~s-RLvyr---KGiDll~~iIp~vc 221 (426)
T KOG1111|consen 157 KENTVLRGALAPAKVSVIPN-AVVTHTFTPDAAD----------KPSADIITIVVAS-RLVYR---KGIDLLLEIIPSVC 221 (426)
T ss_pred CCceEEEeccCHhHeeeccc-eeeccccccCccc----------cCCCCeeEEEEEe-eeeec---cchHHHHHHHHHHH
Confidence 34555667788899999995 7777555543321 22333 4566666 66777 99999999999999
Q ss_pred hhcccCCCCCCCEEEEEEe-CCCCCchHHHHHHHHHHcCCCCccEEEcccc--ccHHHHHHHcCeeEEcccCCcCCccHH
Q 002535 365 SEVSVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAAE--GDVDSVLNTADVVIYGSFLEEQTFPEI 441 (911)
Q Consensus 365 ~~~p~~~~~~~~vkLvIVG-G~~~e~Y~~~Le~la~~lgL~~~~V~flG~v--~dV~~~L~~ADVfVlPS~~E~qGFplv 441 (911)
+++|+ ++++|+| ||.. ..+|+..+++.+.+ +|.++|.+ +++.+.|.+-|+|+.||..| .|+++
T Consensus 222 ~~~p~-------vrfii~GDGPk~----i~lee~lEk~~l~~-rV~~lG~v~h~~Vr~vl~~G~IFlntSlTE--afc~~ 287 (426)
T KOG1111|consen 222 DKHPE-------VRFIIIGDGPKR----IDLEEMLEKLFLQD-RVVMLGTVPHDRVRDVLVRGDIFLNTSLTE--AFCMV 287 (426)
T ss_pred hcCCC-------eeEEEecCCccc----chHHHHHHHhhccC-ceEEecccchHHHHHHHhcCcEEeccHHHH--HHHHH
Confidence 99998 9999999 9988 77788888889998 99999987 89999999999999999999 59999
Q ss_pred HHHHHHcCCCEEecCCCccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH-hcCHHHHHHH
Q 002535 442 LVKALCFRKPIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSVK-NLMALETIEG 520 (911)
Q Consensus 442 LLEAMA~G~PVIaTd~gGi~EiV~dg~nGlLv~~~D~eaLAeaI~~LLsd~~~p~~~~~mg~~ar~~ae-~Fs~e~ia~~ 520 (911)
++|||+||+|||+|.+||++|++.++ -......+++++++++.+.+.. -. ..-+...+.++ .|+|+.++++
T Consensus 288 ivEAaScGL~VVsTrVGGIpeVLP~d--~i~~~~~~~~dl~~~v~~ai~~---~~---~~p~~~h~~v~~~y~w~dVa~r 359 (426)
T KOG1111|consen 288 IVEAASCGLPVVSTRVGGIPEVLPED--MITLGEPGPDDLVGAVEKAITK---LR---TLPLEFHDRVKKMYSWKDVAER 359 (426)
T ss_pred HHHHHhCCCEEEEeecCCccccCCcc--ceeccCCChHHHHHHHHHHHHH---hc---cCchhHHHHHHHhccHHHHHHH
Confidence 99999999999999999999999774 2334445789999999988875 11 11223345564 4999999999
Q ss_pred HHHHHHHHhcC
Q 002535 521 YAMLLENVLKL 531 (911)
Q Consensus 521 y~~Lye~vL~~ 531 (911)
.+++|.++.+.
T Consensus 360 Tekvy~r~~~t 370 (426)
T KOG1111|consen 360 TEKVYDRAATT 370 (426)
T ss_pred HHHHHHHHhhc
Confidence 99999998764
No 60
>PLN02501 digalactosyldiacylglycerol synthase
Probab=99.94 E-value=2.4e-24 Score=251.88 Aligned_cols=337 Identities=12% Similarity=0.117 Sum_probs=225.4
Q ss_pred CCEEEEEeCCCC--CChHHHHHHHHHHHHHHC-CCeEEEEEeCCCc-----------------chh----hh--hhcCce
Q 002535 144 KPQLALVFPDLL--IDPQQLQMVTIAIALREI-GYAIQVYSLEDGR-----------------AHE----VW--RNIGVP 197 (911)
Q Consensus 144 kprIalI~~~L~--~GGae~~v~~LAk~L~~~-GyeV~V~t~~~g~-----------------~~~----~~--~~~gi~ 197 (911)
+..+++|++.-. ..|...--+-=|-+|.+. ++.|+++.+.-.+ .+. .| +..|.+
T Consensus 322 ~r~~~ivTtAslPWmTGtavnpL~rAayLa~~~~~~VtlviPWl~~~dq~~vy~~~~~F~~p~eQe~~ir~wl~~r~g~~ 401 (794)
T PLN02501 322 KRHVAIVTTASLPWMTGTAVNPLFRAAYLAKSAKQNVTLLVPWLCKSDQELVYPNNLTFSSPEEQESYIRNWLEERIGFK 401 (794)
T ss_pred CCeEEEEEcccCcccccccccHHHHHHHhcccCCceEEEEEecCCccccccccCCCcccCCHHHHHHHHHHHHHHhcCCC
Confidence 578888887442 345554444445566666 7899988763211 000 01 122222
Q ss_pred ----EEEec--c---------chhHHHhhhhcCccEEEEcCcchhHHH--HHHhhCCCCCCCEEEEEcCchhhHHHHHHH
Q 002535 198 ----VAILQ--T---------GREKASFVNWLNYDGILVNSLEAKVVI--SNIMQEPFKSLPLVWTIHEGTLATRARNYA 260 (911)
Q Consensus 198 ----v~~l~--~---------~~~l~~lI~~~kpDIIhvhs~~~~~~i--a~L~~~~~~giPvV~tiH~~~L~~~l~k~~ 260 (911)
+...+ + ...+...+...+|||||++++...+.. +..++++ .+ |+|.++|.+-..| +..+.
T Consensus 402 ~~~~i~fYpg~~~~~~~SI~p~gdI~~~L~~f~PDVVHLatP~~LGw~~~Glr~ArK-l~-PVVasyHTny~eY-l~~y~ 478 (794)
T PLN02501 402 ADFKISFYPGKFSKERRSIIPAGDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDK-FN-HVVGVVHTNYLEY-IKREK 478 (794)
T ss_pred CCceEEeecchhccCCccccchHHHHHHhhccCCCEEEECCchhhccHHHHHHHHHH-cC-CeEEEEeCCcHHH-HhHhc
Confidence 11111 1 123455677899999999999886555 4444443 34 8999999753321 11111
Q ss_pred ----hhcchhhHhhHHHHHhhcceEEecCCccccccccCCCCCEEEeCCCCCCcccccccCchhhHHHHHhhCCCCCCeE
Q 002535 261 ----SSGQLELLNDWKKVFNRATVVVFPDYVLPMMYSAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLV 336 (911)
Q Consensus 261 ----~~~~d~lIs~~~~~~~~a~~vvfpn~~l~ii~~~id~~ki~VIpg~gVD~~~f~~~~~~~k~~lR~~lgi~~d~~v 336 (911)
.......+..+-..+. ++.++.++..... +....+..+ .|||...|.+-. +...+.+++.......
T Consensus 479 ~g~L~~~llk~l~~~v~r~h-cD~VIaPS~atq~----L~~~vI~nV--nGVDte~F~P~~---r~~~~r~lgi~~~~kg 548 (794)
T PLN02501 479 NGALQAFFVKHINNWVTRAY-CHKVLRLSAATQD----LPKSVICNV--HGVNPKFLKIGE---KVAEERELGQQAFSKG 548 (794)
T ss_pred chhHHHHHHHHHHHHHHHhh-CCEEEcCCHHHHH----hcccceeec--ccccccccCCcc---hhHHHHhcCCccccCc
Confidence 1111111111211111 6777777644331 122222222 389995554432 2223345666554556
Q ss_pred EEEEEeccccccccccHHHHHHHHHHhhhhcccCCCCCCCEEEEEEe-CCCCCchHHHHHHHHHHcCCCCccEEEccccc
Q 002535 337 IAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEG 415 (911)
Q Consensus 337 IL~VGsrl~~~KGiKg~dlLLeAl~~L~~~~p~~~~~~~~vkLvIVG-G~~~e~Y~~~Le~la~~lgL~~~~V~flG~v~ 415 (911)
++++| ++.+. ||++.|++|+..+.++.|+ ++|+|+| |+.. +.++++++++++ .|.|+|..+
T Consensus 549 iLfVG-RLa~E---KGld~LLeAla~L~~~~pn-------vrLvIVGDGP~r----eeLe~la~eLgL---~V~FLG~~d 610 (794)
T PLN02501 549 AYFLG-KMVWA---KGYRELIDLLAKHKNELDG-------FNLDVFGNGEDA----HEVQRAAKRLDL---NLNFLKGRD 610 (794)
T ss_pred eEEEE-ccccc---CCHHHHHHHHHHHHhhCCC-------eEEEEEcCCccH----HHHHHHHHHcCC---EEEecCCCC
Confidence 89999 55555 9999999999999877777 9999999 9876 788999998776 389999998
Q ss_pred cHHHHHHHcCeeEEcccCCcCCccHHHHHHHHcCCCEEecCCCccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCc
Q 002535 416 DVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKIS 495 (911)
Q Consensus 416 dV~~~L~~ADVfVlPS~~E~qGFplvLLEAMA~G~PVIaTd~gGi~EiV~dg~nGlLv~~~D~eaLAeaI~~LLsd~~~p 495 (911)
++.++|+.+|+||+||..| |||++++||||||+|||+++.+|. +++.++.+|+++ +|+++++++|.+++++ +
T Consensus 611 d~~~lyasaDVFVlPS~sE--gFGlVlLEAMA~GlPVVATd~pG~-e~V~~g~nGll~--~D~EafAeAI~~LLsd---~ 682 (794)
T PLN02501 611 HADDSLHGYKVFINPSISD--VLCTATAEALAMGKFVVCADHPSN-EFFRSFPNCLTY--KTSEDFVAKVKEALAN---E 682 (794)
T ss_pred CHHHHHHhCCEEEECCCcc--cchHHHHHHHHcCCCEEEecCCCC-ceEeecCCeEec--CCHHHHHHHHHHHHhC---c
Confidence 8999999999999999999 799999999999999999999985 447778888875 6999999999999999 7
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 002535 496 PFARNIASIGRRSVKNLMALETIEGYAML 524 (911)
Q Consensus 496 ~~~~~mg~~ar~~ae~Fs~e~ia~~y~~L 524 (911)
..+..++. ..+++|+.+++++.+.
T Consensus 683 ~~rl~~~a-----~~~~SWeAaadrLle~ 706 (794)
T PLN02501 683 PQPLTPEQ-----RYNLSWEAATQRFMEY 706 (794)
T ss_pred hhhhHHHH-----HhhCCHHHHHHHHHHh
Confidence 65433322 3489999999988764
No 61
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=99.93 E-value=1.5e-24 Score=242.01 Aligned_cols=319 Identities=14% Similarity=0.084 Sum_probs=204.9
Q ss_pred EEEEEeCCCC-CChHHHHHHHHHHHHHHCCCeEEEEEeCCCcchhhhhhcCceEEE--------------eccchhHHHh
Q 002535 146 QLALVFPDLL-IDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAI--------------LQTGREKASF 210 (911)
Q Consensus 146 rIalI~~~L~-~GGae~~v~~LAk~L~~~GyeV~V~t~~~g~~~~~~~~~gi~v~~--------------l~~~~~l~~l 210 (911)
||+++++... .||+|+++.++++.|.+. +|.......+..........+.... .+........
T Consensus 1 ~i~~~~~~~~~~GG~E~~~~~l~~~l~~~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (351)
T cd03804 1 KVAIVHDWLVNIGGGEKVVEALARLFPDA--DIFTLVDDPDKLPRLLRLKKIRTSFIQKLPFARRRYRKYLPLMPLAIEQ 78 (351)
T ss_pred CEEEEEeccccCCCHHHHHHHHHHhCCCC--CEEEEeecCCccchhhcCCceeechhhhchhhHhhHhhhCchhhHHHHh
Confidence 5788888775 899999999999998653 3333222222111111100011000 0111112223
Q ss_pred hhhcCccEEEEcCcchhHHHHHHhhCCCCCCCEEEEEcCch-----hhHHHHHHH---h----h-cchhhHhhHHHHHhh
Q 002535 211 VNWLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGT-----LATRARNYA---S----S-GQLELLNDWKKVFNR 277 (911)
Q Consensus 211 I~~~kpDIIhvhs~~~~~~ia~L~~~~~~giPvV~tiH~~~-----L~~~l~k~~---~----~-~~d~lIs~~~~~~~~ 277 (911)
+...++|+||+++.... . .+. ...++|.++++|... ......... . . ....+.......++.
T Consensus 79 ~~~~~~D~v~~~~~~~~--~-~~~--~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (351)
T cd03804 79 FDLSGYDLVISSSHAVA--K-GVI--TRPDQLHICYCHTPMRYAWDLYHDYLKESGLGKRLALRLLLHYLRIWDRRSAAR 153 (351)
T ss_pred ccccCCCEEEEcCcHHh--c-ccc--CCCCCcEEEEeCCchHHHhcCchHhhhhcccchhhHHHHHHHHHHHHHHHHhcC
Confidence 44578999998875442 1 111 245789999999621 000000000 0 0 001111123344567
Q ss_pred cceEEecCCccccccccCCCCCEEEeCCCCCCcccccccCchhhHHHHHhhCCCCCCeEEEEEEeccccccccccHHHHH
Q 002535 278 ATVVVFPDYVLPMMYSAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALIL 357 (911)
Q Consensus 278 a~~vvfpn~~l~ii~~~id~~ki~VIpg~gVD~~~f~~~~~~~k~~lR~~lgi~~d~~vIL~VGsrl~~~KGiKg~dlLL 357 (911)
++.++..+..........-..+..+|++ |+|...+.+.. ..+..++++|+ +.+. ||++.++
T Consensus 154 ~d~ii~~S~~~~~~~~~~~~~~~~vi~~-~~d~~~~~~~~--------------~~~~~il~~G~-~~~~---K~~~~li 214 (351)
T cd03804 154 VDYFIANSRFVARRIKKYYGRDATVIYP-PVDTDRFTPAE--------------EKEDYYLSVGR-LVPY---KRIDLAI 214 (351)
T ss_pred CCEEEECCHHHHHHHHHHhCCCcEEECC-CCCHhhcCcCC--------------CCCCEEEEEEc-Cccc---cChHHHH
Confidence 7877777655221111111234567774 78774432211 13347899995 4444 9999999
Q ss_pred HHHHHhhhhcccCCCCCCCEEEEEEe-CCCCCchHHHHHHHHHHcCCCCccEEEcccc--ccHHHHHHHcCeeEEcccCC
Q 002535 358 RALLPLFSEVSVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAAE--GDVDSVLNTADVVIYGSFLE 434 (911)
Q Consensus 358 eAl~~L~~~~p~~~~~~~~vkLvIVG-G~~~e~Y~~~Le~la~~lgL~~~~V~flG~v--~dV~~~L~~ADVfVlPS~~E 434 (911)
+|+..+. ++|+|+| |+.. +.+++ +..+ +|+|+|++ +++.++|+.||++++||. |
T Consensus 215 ~a~~~~~------------~~l~ivG~g~~~----~~l~~-----~~~~-~V~~~g~~~~~~~~~~~~~ad~~v~ps~-e 271 (351)
T cd03804 215 EAFNKLG------------KRLVVIGDGPEL----DRLRA-----KAGP-NVTFLGRVSDEELRDLYARARAFLFPAE-E 271 (351)
T ss_pred HHHHHCC------------CcEEEEECChhH----HHHHh-----hcCC-CEEEecCCCHHHHHHHHHhCCEEEECCc-C
Confidence 9998763 5899999 7643 34443 3445 79999988 559999999999999998 7
Q ss_pred cCCccHHHHHHHHcCCCEEecCCCccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhcCH
Q 002535 435 EQTFPEILVKALCFRKPIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSVKNLMA 514 (911)
Q Consensus 435 ~qGFplvLLEAMA~G~PVIaTd~gGi~EiV~dg~nGlLv~~~D~eaLAeaI~~LLsd~~~p~~~~~mg~~ar~~ae~Fs~ 514 (911)
|||++++|||+||+|||+++.||..|++.++.+|++++++|+++++++|.++++| ++ .++++.++.+++|++
T Consensus 272 --~~g~~~~Eama~G~Pvi~~~~~~~~e~i~~~~~G~~~~~~~~~~la~~i~~l~~~---~~---~~~~~~~~~~~~~~~ 343 (351)
T cd03804 272 --DFGIVPVEAMASGTPVIAYGKGGALETVIDGVTGILFEEQTVESLAAAVERFEKN---ED---FDPQAIRAHAERFSE 343 (351)
T ss_pred --CCCchHHHHHHcCCCEEEeCCCCCcceeeCCCCEEEeCCCCHHHHHHHHHHHHhC---cc---cCHHHHHHHHHhcCH
Confidence 7999999999999999999999999999999999999999999999999999999 64 234444556677998
Q ss_pred HHHHHHH
Q 002535 515 LETIEGY 521 (911)
Q Consensus 515 e~ia~~y 521 (911)
++..+++
T Consensus 344 ~~~~~~~ 350 (351)
T cd03804 344 SRFREKI 350 (351)
T ss_pred HHHHHHh
Confidence 8877654
No 62
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=99.93 E-value=7.7e-25 Score=245.92 Aligned_cols=271 Identities=16% Similarity=0.182 Sum_probs=197.8
Q ss_pred cCccEEEEcCcchhHHHHHHhhCCCCCCCEEEEEcCchhhHHHHHHHhhcchhhHhhHHHHHhhcceEEecCCcc-cccc
Q 002535 214 LNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRATVVVFPDYVL-PMMY 292 (911)
Q Consensus 214 ~kpDIIhvhs~~~~~~ia~L~~~~~~giPvV~tiH~~~L~~~l~k~~~~~~d~lIs~~~~~~~~a~~vvfpn~~l-~ii~ 292 (911)
.++|+++++....... .+.. .....+.+.++|+......-... .................++.+++++... ..+.
T Consensus 98 ~~~diii~~~~~~~~~--~~~~-~~~~~~~i~~~h~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~l~ 173 (372)
T cd04949 98 TKPDVFILDRPTLDGQ--ALLN-MKKAAKVVVVLHSNHVSDNNDPV-HSLINNFYEYVFENLDKVDGVIVATEQQKQDLQ 173 (372)
T ss_pred CCCCEEEECCccccch--hHHh-ccCCceEEEEEChHHhCCccccc-ccccchhhHHHHhChhhCCEEEEccHHHHHHHH
Confidence 6899999998776422 2221 23445688899963221100000 0000000000111123455555554431 1111
Q ss_pred ccCC-CCCEEEeCCCCCCcccccccCchhhHHHHHhhCCCCCCeEEEEEEeccccccccccHHHHHHHHHHhhhhcccCC
Q 002535 293 SAFD-AGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVEN 371 (911)
Q Consensus 293 ~~id-~~ki~VIpg~gVD~~~f~~~~~~~k~~lR~~lgi~~d~~vIL~VGsrl~~~KGiKg~dlLLeAl~~L~~~~p~~~ 371 (911)
..+. ..++.+||+ +++...+.+.. .....+..++++|+ +.+. ||++.+++|+..+.++.|+
T Consensus 174 ~~~~~~~~v~~ip~-g~~~~~~~~~~-----------~~~~~~~~i~~vgr-l~~~---K~~~~li~a~~~l~~~~~~-- 235 (372)
T cd04949 174 KQFGNYNPIYTIPV-GSIDPLKLPAQ-----------FKQRKPHKIITVAR-LAPE---KQLDQLIKAFAKVVKQVPD-- 235 (372)
T ss_pred HHhCCCCceEEEcc-cccChhhcccc-----------hhhcCCCeEEEEEc-cCcc---cCHHHHHHHHHHHHHhCCC--
Confidence 1121 234788884 77763322110 01234568999994 5555 9999999999999988888
Q ss_pred CCCCCEEEEEEe-CCCCCchHHHHHHHHHHcCCCCccEEEccccccHHHHHHHcCeeEEcccCCcCCccHHHHHHHHcCC
Q 002535 372 ESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRK 450 (911)
Q Consensus 372 ~~~~~vkLvIVG-G~~~e~Y~~~Le~la~~lgL~~~~V~flG~v~dV~~~L~~ADVfVlPS~~E~qGFplvLLEAMA~G~ 450 (911)
++|+|+| |+.. ..+++.++++++.+ +|.+.|+.+++.++|+.||++|+||..| |||++++|||++|+
T Consensus 236 -----~~l~i~G~g~~~----~~~~~~~~~~~~~~-~v~~~g~~~~~~~~~~~ad~~v~~S~~E--g~~~~~lEAma~G~ 303 (372)
T cd04949 236 -----ATLDIYGYGDEE----EKLKELIEELGLED-YVFLKGYTRDLDEVYQKAQLSLLTSQSE--GFGLSLMEALSHGL 303 (372)
T ss_pred -----cEEEEEEeCchH----HHHHHHHHHcCCcc-eEEEcCCCCCHHHHHhhhhEEEeccccc--ccChHHHHHHhCCC
Confidence 9999999 7665 66778888889988 9999999999999999999999999988 79999999999999
Q ss_pred CEEecCCC-ccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhcCHHHHHHHH
Q 002535 451 PIIAPDLS-NIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSVKNLMALETIEGY 521 (911)
Q Consensus 451 PVIaTd~g-Gi~EiV~dg~nGlLv~~~D~eaLAeaI~~LLsd~~~p~~~~~mg~~ar~~ae~Fs~e~ia~~y 521 (911)
|||+++.+ |..+++.++.+|++++++|+++++++|.+++++ ++.+.+|++++++.+++|++++++++|
T Consensus 304 PvI~~~~~~g~~~~v~~~~~G~lv~~~d~~~la~~i~~ll~~---~~~~~~~~~~a~~~~~~~s~~~~~~~w 372 (372)
T cd04949 304 PVISYDVNYGPSEIIEDGENGYLVPKGDIEALAEAIIELLND---PKLLQKFSEAAYENAERYSEENVWEKW 372 (372)
T ss_pred CEEEecCCCCcHHHcccCCCceEeCCCcHHHHHHHHHHHHcC---HHHHHHHHHHHHHHHHHhhHHHHHhcC
Confidence 99999987 899999999999999999999999999999999 999999999999999999999998764
No 63
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.93 E-value=9.6e-24 Score=236.84 Aligned_cols=322 Identities=13% Similarity=0.101 Sum_probs=222.8
Q ss_pred CEEEEEeCCCCCChHHHHHHHHHHHHHHCCCeEEEEEeCCCcchhhhhhcCceEEEeccch-------------------
Q 002535 145 PQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGR------------------- 205 (911)
Q Consensus 145 prIalI~~~L~~GGae~~v~~LAk~L~~~GyeV~V~t~~~g~~~~~~~~~gi~v~~l~~~~------------------- 205 (911)
+||.++.++. ||.+..+.++++.|.++||+|.+++...+......+..++++..++...
T Consensus 2 ~~i~i~~~g~--gG~~~~~~~la~~L~~~g~ev~vv~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 79 (357)
T PRK00726 2 KKILLAGGGT--GGHVFPALALAEELKKRGWEVLYLGTARGMEARLVPKAGIEFHFIPSGGLRRKGSLANLKAPFKLLKG 79 (357)
T ss_pred cEEEEEcCcc--hHhhhHHHHHHHHHHhCCCEEEEEECCCchhhhccccCCCcEEEEeccCcCCCChHHHHHHHHHHHHH
Confidence 4555555433 7999999999999999999999998765332223333566666554311
Q ss_pred --hHHHhhhhcCccEEEEcCcchhHHHHHHhhCCCCCCCEEEEEcCchhhHHHHHHHhhcchhhHhhHHHHHhhcceEEe
Q 002535 206 --EKASFVNWLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRATVVVF 283 (911)
Q Consensus 206 --~l~~lI~~~kpDIIhvhs~~~~~~ia~L~~~~~~giPvV~tiH~~~L~~~l~k~~~~~~d~lIs~~~~~~~~a~~vvf 283 (911)
.+.++++..+||+||+|+... ...+.++. +..++|+|++.|.. ......++....++.+++.+...+
T Consensus 80 ~~~~~~~ik~~~pDvv~~~~~~~-~~~~~~~~-~~~~~p~v~~~~~~-~~~~~~r~~~~~~d~ii~~~~~~~-------- 148 (357)
T PRK00726 80 VLQARKILKRFKPDVVVGFGGYV-SGPGGLAA-RLLGIPLVIHEQNA-VPGLANKLLARFAKKVATAFPGAF-------- 148 (357)
T ss_pred HHHHHHHHHhcCCCEEEECCCcc-hhHHHHHH-HHcCCCEEEEcCCC-CccHHHHHHHHHhchheECchhhh--------
Confidence 123346668999999998655 24444443 35678999877642 111223333333343332222110
Q ss_pred cCCccccccccCCCCCEEEeCCCCCCcccccccCchhhHHHHHhhCCCCCCeEEEEEEeccccccccccHHH-HHHHHHH
Q 002535 284 PDYVLPMMYSAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHAL-ILRALLP 362 (911)
Q Consensus 284 pn~~l~ii~~~id~~ki~VIpg~gVD~~~f~~~~~~~k~~lR~~lgi~~d~~vIL~VGsrl~~~KGiKg~dl-LLeAl~~ 362 (911)
.. .+..++.+++| |++...+.. . ..+++++++++.++++++|+.... +++.. +++|+.+
T Consensus 149 --------~~-~~~~~i~vi~n-~v~~~~~~~---~---~~~~~~~~~~~~~~i~~~gg~~~~----~~~~~~l~~a~~~ 208 (357)
T PRK00726 149 --------PE-FFKPKAVVTGN-PVREEILAL---A---APPARLAGREGKPTLLVVGGSQGA----RVLNEAVPEALAL 208 (357)
T ss_pred --------hc-cCCCCEEEECC-CCChHhhcc---c---chhhhccCCCCCeEEEEECCcHhH----HHHHHHHHHHHHH
Confidence 11 45678999995 888743321 1 122345666777788888865555 66544 4488888
Q ss_pred hhhhcccCCCCCCCEEEEEEe-CCCCCchHHHHHHHHHHcCCCCccEEEccccccHHHHHHHcCeeEEcccCCcCCccHH
Q 002535 363 LFSEVSVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEI 441 (911)
Q Consensus 363 L~~~~p~~~~~~~~vkLvIVG-G~~~e~Y~~~Le~la~~lgL~~~~V~flG~v~dV~~~L~~ADVfVlPS~~E~qGFplv 441 (911)
+.+. + ..++++| |+. +.+++..+ +++ +|.+.|+++++.++|..||++|++| | +++
T Consensus 209 ~~~~-~--------~~~~~~G~g~~-----~~~~~~~~-~~~---~v~~~g~~~~~~~~~~~~d~~i~~~-----g-~~~ 264 (357)
T PRK00726 209 LPEA-L--------QVIHQTGKGDL-----EEVRAAYA-AGI---NAEVVPFIDDMAAAYAAADLVICRA-----G-AST 264 (357)
T ss_pred hhhC-c--------EEEEEcCCCcH-----HHHHHHhh-cCC---cEEEeehHhhHHHHHHhCCEEEECC-----C-HHH
Confidence 7643 2 3577888 653 44444444 555 2999999999999999999999866 2 689
Q ss_pred HHHHHHcCCCEEecCCCc--------cccccccCccEEEEcCCC--HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHh
Q 002535 442 LVKALCFRKPIIAPDLSN--------IRKYVDDRVNGYLFPKEN--IKALTHIILQVITNGKISPFARNIASIGRRSVKN 511 (911)
Q Consensus 442 LLEAMA~G~PVIaTd~gG--------i~EiV~dg~nGlLv~~~D--~eaLAeaI~~LLsd~~~p~~~~~mg~~ar~~ae~ 511 (911)
++|||++|+|||+++.++ ..+.+.+..+|++++++| +++|+++|.++++| ++.+++|++++++.+++
T Consensus 265 ~~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~~i~~~~~g~~~~~~~~~~~~l~~~i~~ll~~---~~~~~~~~~~~~~~~~~ 341 (357)
T PRK00726 265 VAELAAAGLPAILVPLPHAADDHQTANARALVDAGAALLIPQSDLTPEKLAEKLLELLSD---PERLEAMAEAARALGKP 341 (357)
T ss_pred HHHHHHhCCCEEEecCCCCCcCcHHHHHHHHHHCCCEEEEEcccCCHHHHHHHHHHHHcC---HHHHHHHHHHHHhcCCc
Confidence 999999999999987643 235676777899999888 99999999999999 99999999999999999
Q ss_pred cCHHHHHHHHHHHHH
Q 002535 512 LMALETIEGYAMLLE 526 (911)
Q Consensus 512 Fs~e~ia~~y~~Lye 526 (911)
++.+.+++.+.+++.
T Consensus 342 ~~~~~~~~~~~~~~~ 356 (357)
T PRK00726 342 DAAERLADLIEELAR 356 (357)
T ss_pred CHHHHHHHHHHHHhh
Confidence 999999999887754
No 64
>PHA01630 putative group 1 glycosyl transferase
Probab=99.92 E-value=1.6e-23 Score=234.13 Aligned_cols=287 Identities=14% Similarity=0.156 Sum_probs=188.5
Q ss_pred HHHHHHHHHHCCCeEEEEEeCCCcchhhhhhcCceEEEeccchhHHHhhhhcCccEEEEcCcchhHHHHHHhhCCCCCCC
Q 002535 163 MVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVNSLEAKVVISNIMQEPFKSLP 242 (911)
Q Consensus 163 v~~LAk~L~~~GyeV~V~t~~~g~~~~~~~~~gi~v~~l~~~~~l~~lI~~~kpDIIhvhs~~~~~~ia~L~~~~~~giP 242 (911)
-.-+.+.|...|++|+++.... ++ ...+.- .+...+.|+..........+ +..++|
T Consensus 16 ~~~~~~~l~~~~~~~~~~~~~~--~~-------------------~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~ 71 (331)
T PHA01630 16 KKLLEEHLKMLGHKVTVFEKPT--LT-------------------KYQLPP-GYPIYIYYTIFNSMLFWKGI--PHVGKN 71 (331)
T ss_pred HHHHHHHHHHhCCeeEEEeccc--hh-------------------hhhcCC-CCceeeehhhhhHHHHHhhc--cccCCc
Confidence 3445678899999999876432 11 001111 33333344443321222222 245789
Q ss_pred EEEEEcCc-hhhHHHHHHH-hhcchhhHhhHHHHHhhcceEEecCCccc--cccccCC-CCCEEEeCCCCCCcccccccC
Q 002535 243 LVWTIHEG-TLATRARNYA-SSGQLELLNDWKKVFNRATVVVFPDYVLP--MMYSAFD-AGNYYVIPGSPAKAWEADTNM 317 (911)
Q Consensus 243 vV~tiH~~-~L~~~l~k~~-~~~~d~lIs~~~~~~~~a~~vvfpn~~l~--ii~~~id-~~ki~VIpg~gVD~~~f~~~~ 317 (911)
+++++|+. .+...+..+. .+.++. ++.++.... ....+++ .+++.+||| |+|...|.+..
T Consensus 72 ~v~e~~~~~~l~~~~~~~~~~~~ad~--------------ii~~S~~~~~~l~~~g~~~~~~i~vIpN-GVd~~~f~~~~ 136 (331)
T PHA01630 72 IVFEVADTDAISHTALYFFRNQPVDE--------------IVVPSQWSKNAFYTSGLKIPQPIYVIPH-NLNPRMFEYKP 136 (331)
T ss_pred eEEEEEeechhhHHHHHHHhhccCCE--------------EEECCHHHHHHHHHcCCCCCCCEEEECC-CCCHHHcCCCc
Confidence 99999973 2233333333 333444 444433311 1112233 357899995 99985443221
Q ss_pred chhhHHHHHhhCCCCCCeEEEEEEeccccccccccHHHHHHHHHHhhhhcccCCCCCCCEEEEEEe-CCCCCchHHHHHH
Q 002535 318 DLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILS-GDSTSNYSVVIEA 396 (911)
Q Consensus 318 ~~~k~~lR~~lgi~~d~~vIL~VGsrl~~~KGiKg~dlLLeAl~~L~~~~p~~~~~~~~vkLvIVG-G~~~e~Y~~~Le~ 396 (911)
. ...+.+++ ++|+++.+. ||++.+++|++.+.++.++ ++++++| +... ..+
T Consensus 137 ~-----------~~~~~~vl-~~~g~~~~~---Kg~d~Li~A~~~l~~~~~~-------~~llivG~~~~~----~~l-- 188 (331)
T PHA01630 137 K-----------EKPHPCVL-AILPHSWDR---KGGDIVVKIFHELQNEGYD-------FYFLIKSSNMLD----PRL-- 188 (331)
T ss_pred c-----------ccCCCEEE-EEecccccc---CCHHHHHHHHHHHHhhCCC-------EEEEEEeCcccc----hhh--
Confidence 1 01234444 444466555 9999999999999887777 9999999 4332 111
Q ss_pred HHHHcCCCCccEEEccccccHHHHHHHcCeeEEcccCCcCCccHHHHHHHHcCCCEEecCCCccccccccCccEEEEcC-
Q 002535 397 IAHNLHYPLGVVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSNIRKYVDDRVNGYLFPK- 475 (911)
Q Consensus 397 la~~lgL~~~~V~flG~v~dV~~~L~~ADVfVlPS~~E~qGFplvLLEAMA~G~PVIaTd~gGi~EiV~dg~nGlLv~~- 475 (911)
.++.. +......+++.++|+.||++|+||..| |||++++||||||+|||+|+.||++|++.++.||++++.
T Consensus 189 ----~~~~~--~~~~v~~~~l~~~y~~aDv~v~pS~~E--~fgl~~lEAMA~G~PVIas~~gg~~E~i~~~~ng~lv~~~ 260 (331)
T PHA01630 189 ----FGLNG--VKTPLPDDDIYSLFAGCDILFYPVRGG--AFEIPVIEALALGLDVVVTEKGAWSEWVLSNLDVYWIKSG 260 (331)
T ss_pred ----ccccc--eeccCCHHHHHHHHHhCCEEEECCccc--cCChHHHHHHHcCCCEEEeCCCCchhhccCCCceEEeeec
Confidence 13332 222223489999999999999999988 799999999999999999999999999999999888763
Q ss_pred ------------------CCHHHHHHHHHHHHHcCCCc--HHHH-HHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 002535 476 ------------------ENIKALTHIILQVITNGKIS--PFAR-NIASIGRRSVKNLMALETIEGYAMLLEN 527 (911)
Q Consensus 476 ------------------~D~eaLAeaI~~LLsd~~~p--~~~~-~mg~~ar~~ae~Fs~e~ia~~y~~Lye~ 527 (911)
.|.+++++++.+++.| + +..+ .++.+++...++|+|++++++|.++|++
T Consensus 261 ~~~~~~~~~~~~~G~~v~~~~~~~~~~ii~~l~~---~~~~~~~~~~~~~~~~~~~~fs~~~ia~k~~~l~~~ 330 (331)
T PHA01630 261 RKPKLWYTNPIHVGYFLDPDIEDAYQKLLEALAN---WTPEKKKENLEGRAILYRENYSYNAIAKMWEKILEK 330 (331)
T ss_pred ccccccccCCcccccccCCCHHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 2788899999999987 5 4444 4555555556889999999999999975
No 65
>PLN02275 transferase, transferring glycosyl groups
Probab=99.92 E-value=2.9e-23 Score=235.24 Aligned_cols=308 Identities=13% Similarity=0.063 Sum_probs=197.2
Q ss_pred CChHHHHHHHHHHHHHHCC-CeEEEEEeCCCc-chhhhhhcCceEEEeccchh-------------HHH-----------
Q 002535 156 IDPQQLQMVTIAIALREIG-YAIQVYSLEDGR-AHEVWRNIGVPVAILQTGRE-------------KAS----------- 209 (911)
Q Consensus 156 ~GGae~~v~~LAk~L~~~G-yeV~V~t~~~g~-~~~~~~~~gi~v~~l~~~~~-------------l~~----------- 209 (911)
-.|.+..+..++..|.++| ++|++++...+. ........++.+..++.... +..
T Consensus 14 ~~g~~~r~~~~~~~l~~~~~~~v~vi~~~~~~~~~~~~~~~~v~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (371)
T PLN02275 14 DFGRSPRMQYHALSLARQASFQVDVVAYGGSEPIPALLNHPSIHIHLMVQPRLLQRLPRVLYALALLLKVAIQFLMLLWF 93 (371)
T ss_pred CCCCCHHHHHHHHHHHhcCCceEEEEEecCCCCCHHHhcCCcEEEEECCCcccccccccchHHHHHHHHHHHHHHHHHHH
Confidence 3455666777777787776 489999986533 23333444566666641100 001
Q ss_pred -hhhhcCccEEEEcCcchhH--HHHHHhhCCCCCCCEEEEEcCchhh-HHHHHHHhhcchhh-HhhHHHHHhhcceEEec
Q 002535 210 -FVNWLNYDGILVNSLEAKV--VISNIMQEPFKSLPLVWTIHEGTLA-TRARNYASSGQLEL-LNDWKKVFNRATVVVFP 284 (911)
Q Consensus 210 -lI~~~kpDIIhvhs~~~~~--~ia~L~~~~~~giPvV~tiH~~~L~-~~l~k~~~~~~d~l-Is~~~~~~~~a~~vvfp 284 (911)
..+..+||+||+|++.... ..+.++.+ ..++|+|+++|+.... .............+ ....+..++.++.++.+
T Consensus 94 ~~~~~~~~DvV~~~~~~~~~~~~~~~~~~~-~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~ii~~ 172 (371)
T PLN02275 94 LCVKIPRPDVFLVQNPPSVPTLAVVKLACW-LRRAKFVIDWHNFGYTLLALSLGRSHPLVRLYRWYERHYGKMADGHLCV 172 (371)
T ss_pred HHhhCCCCCEEEEeCCCCcHHHHHHHHHHH-HhCCCEEEEcCCccHHHHhcccCCCCHHHHHHHHHHHHHHhhCCEEEEC
Confidence 1234799999999755421 23333332 4568999999974211 00000000000111 11344556778888777
Q ss_pred CCccccc-c--ccCCCCCEEEeCCCCCCcccccccCchhhHHHHHhhCCCCCCeEEEEEEeccccccccccHHHHHHHHH
Q 002535 285 DYVLPMM-Y--SAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALL 361 (911)
Q Consensus 285 n~~l~ii-~--~~id~~ki~VIpg~gVD~~~f~~~~~~~k~~lR~~lgi~~d~~vIL~VGsrl~~~KGiKg~dlLLeAl~ 361 (911)
+...... . .+++ +.+|+| ++ ...|.+.... .... .++..+++++| ++.+. ||++.+++|+.
T Consensus 173 S~~~~~~l~~~~g~~---i~vi~n-~~-~~~f~~~~~~------~~~~-~~~~~~i~~~g-rl~~~---k~~~~li~a~~ 236 (371)
T PLN02275 173 TKAMQHELDQNWGIR---ATVLYD-QP-PEFFRPASLE------IRLR-PNRPALVVSST-SWTPD---EDFGILLEAAV 236 (371)
T ss_pred CHHHHHHHHHhcCCC---eEEECC-CC-HHHcCcCCch------hccc-CCCcEEEEEeC-ceecc---CCHHHHHHHHH
Confidence 6652211 1 1222 778886 43 3333322111 0111 23345777888 55555 99999999999
Q ss_pred HhhhhcccCC----------CCCCCEEEEEEe-CCCCCchHHHHHHHHHHcCCCCccEEEcc-cc--ccHHHHHHHcCee
Q 002535 362 PLFSEVSVEN----------ESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMA-AE--GDVDSVLNTADVV 427 (911)
Q Consensus 362 ~L~~~~p~~~----------~~~~~vkLvIVG-G~~~e~Y~~~Le~la~~lgL~~~~V~flG-~v--~dV~~~L~~ADVf 427 (911)
.+.......+ ...++++|+|+| |+.. +.+++.++++++++ +.|.+ ++ +++..+|++||++
T Consensus 237 ~l~~~~~~~~~~~~~~~~~~~~~~~i~l~ivG~G~~~----~~l~~~~~~~~l~~--v~~~~~~~~~~~~~~~l~~aDv~ 310 (371)
T PLN02275 237 MYDRRVAARLNESDSASGKQSLYPRLLFIITGKGPQK----AMYEEKISRLNLRH--VAFRTMWLEAEDYPLLLGSADLG 310 (371)
T ss_pred HHHhhhhhccccccccccccccCCCeEEEEEeCCCCH----HHHHHHHHHcCCCc--eEEEcCCCCHHHHHHHHHhCCEE
Confidence 8753211000 012349999999 8876 88999999999987 77655 44 8999999999999
Q ss_pred EEcc--cCCcCCccHHHHHHHHcCCCEEecCCCccccccccCccEEEEcCCCHHHHHHHHHHHH
Q 002535 428 IYGS--FLEEQTFPEILVKALCFRKPIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVI 489 (911)
Q Consensus 428 VlPS--~~E~qGFplvLLEAMA~G~PVIaTd~gGi~EiV~dg~nGlLv~~~D~eaLAeaI~~LL 489 (911)
|+|+ ...+ |+|++++||||||+|||+++.||.+|+|.++.+|++++ |+++|+++|.+++
T Consensus 311 v~~~~s~~~e-~~p~~llEAmA~G~PVVa~~~gg~~eiv~~g~~G~lv~--~~~~la~~i~~l~ 371 (371)
T PLN02275 311 VSLHTSSSGL-DLPMKVVDMFGCGLPVCAVSYSCIGELVKDGKNGLLFS--SSSELADQLLELL 371 (371)
T ss_pred EEeccccccc-cccHHHHHHHHCCCCEEEecCCChHHHccCCCCeEEEC--CHHHHHHHHHHhC
Confidence 9864 2212 79999999999999999999999999999999999997 7999999998874
No 66
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.91 E-value=4.5e-23 Score=229.70 Aligned_cols=313 Identities=14% Similarity=0.147 Sum_probs=216.0
Q ss_pred EeCCCCCChHHHHHHHHHHHHHHCCCeEEEEEeCCCcchhhhhhcCceEEEeccc---------------------hhHH
Q 002535 150 VFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTG---------------------REKA 208 (911)
Q Consensus 150 I~~~L~~GGae~~v~~LAk~L~~~GyeV~V~t~~~g~~~~~~~~~gi~v~~l~~~---------------------~~l~ 208 (911)
++.....||.+..+..+++.|.++||+|.+++...+.........++++..++.. ..+.
T Consensus 3 ~~~~~~~gG~~~~~~~la~~l~~~G~ev~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (350)
T cd03785 3 LIAGGGTGGHIFPALALAEELRERGAEVLFLGTKRGLEARLVPKAGIPLHTIPVGGLRRKGSLKKLKAPFKLLKGVLQAR 82 (350)
T ss_pred EEEecCchhhhhHHHHHHHHHHhCCCEEEEEECCCcchhhcccccCCceEEEEecCcCCCChHHHHHHHHHHHHHHHHHH
Confidence 4445556899999999999999999999999876543322223334555544321 1133
Q ss_pred HhhhhcCccEEEEcCcchhHHHHHHhhCCCCCCCEEEEEcCchhhHHHHHHHhhcchhhHhhHHHHHhhcceEEecCCcc
Q 002535 209 SFVNWLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRATVVVFPDYVL 288 (911)
Q Consensus 209 ~lI~~~kpDIIhvhs~~~~~~ia~L~~~~~~giPvV~tiH~~~L~~~l~k~~~~~~d~lIs~~~~~~~~a~~vvfpn~~l 288 (911)
+.++..+||+||+|+.... ..+.++. +..++|++++.|+.. .... .+..+..++.++.++...
T Consensus 83 ~~i~~~~pDvI~~~~~~~~-~~~~~~a-~~~~~p~v~~~~~~~-~~~~--------------~~~~~~~~~~vi~~s~~~ 145 (350)
T cd03785 83 KILKKFKPDVVVGFGGYVS-GPVGLAA-KLLGIPLVIHEQNAV-PGLA--------------NRLLARFADRVALSFPET 145 (350)
T ss_pred HHHHhcCCCEEEECCCCcc-hHHHHHH-HHhCCCEEEEcCCCC-ccHH--------------HHHHHHhhCEEEEcchhh
Confidence 4466789999999986552 3333333 356789887655321 1111 111223355555543332
Q ss_pred ccccccCCCCCEEEeCCCCCCcccccccCchhhHHHHHhhCCCCCCeEEEEEEeccccccccccHH-HHHHHHHHhhhhc
Q 002535 289 PMMYSAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHA-LILRALLPLFSEV 367 (911)
Q Consensus 289 ~ii~~~id~~ki~VIpg~gVD~~~f~~~~~~~k~~lR~~lgi~~d~~vIL~VGsrl~~~KGiKg~d-lLLeAl~~L~~~~ 367 (911)
... +...++.+|+ ++++...+.. . . .+++++.+++.++++++|+.... |+.. .+++|+..+.+
T Consensus 146 ~~~---~~~~~~~~i~-n~v~~~~~~~---~--~-~~~~~~~~~~~~~i~~~~g~~~~----~~~~~~l~~a~~~l~~-- 209 (350)
T cd03785 146 AKY---FPKDKAVVTG-NPVREEILAL---D--R-ERARLGLRPGKPTLLVFGGSQGA----RAINEAVPEALAELLR-- 209 (350)
T ss_pred hhc---CCCCcEEEEC-CCCchHHhhh---h--h-hHHhcCCCCCCeEEEEECCcHhH----HHHHHHHHHHHHHhhc--
Confidence 111 3457888888 4887633221 1 1 16677888888888888866555 6654 45688887763
Q ss_pred ccCCCCCCCEEEE-EEe-CCCCCchHHHHHHHHHHcCCCCccEEEccccccHHHHHHHcCeeEEcccCCcCCccHHHHHH
Q 002535 368 SVENESNSPIKVM-ILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKA 445 (911)
Q Consensus 368 p~~~~~~~~vkLv-IVG-G~~~e~Y~~~Le~la~~lgL~~~~V~flG~v~dV~~~L~~ADVfVlPS~~E~qGFplvLLEA 445 (911)
++ ++++ ++| | .. +.+++.++++ .+ +|.+.|+++++.++|+.||++|++| | +++++||
T Consensus 210 ~~-------~~~~~i~G~g-~~----~~l~~~~~~~--~~-~v~~~g~~~~~~~~l~~ad~~v~~s-----g-~~t~~Ea 268 (350)
T cd03785 210 KR-------LQVIHQTGKG-DL----EEVKKAYEEL--GV-NYEVFPFIDDMAAAYAAADLVISRA-----G-ASTVAEL 268 (350)
T ss_pred cC-------eEEEEEcCCc-cH----HHHHHHHhcc--CC-CeEEeehhhhHHHHHHhcCEEEECC-----C-HhHHHHH
Confidence 23 5544 566 4 32 6677777755 34 7999999999999999999999866 2 6899999
Q ss_pred HHcCCCEEecCCCc--------cccccccCccEEEEcCC--CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhcCHH
Q 002535 446 LCFRKPIIAPDLSN--------IRKYVDDRVNGYLFPKE--NIKALTHIILQVITNGKISPFARNIASIGRRSVKNLMAL 515 (911)
Q Consensus 446 MA~G~PVIaTd~gG--------i~EiV~dg~nGlLv~~~--D~eaLAeaI~~LLsd~~~p~~~~~mg~~ar~~ae~Fs~e 515 (911)
|++|+|||+++.++ ..+.+.++.+|++++++ |+++++++|..+++| ++.+++|+.++++.++.+..+
T Consensus 269 m~~G~Pvv~~~~~~~~~~~~~~~~~~l~~~g~g~~v~~~~~~~~~l~~~i~~ll~~---~~~~~~~~~~~~~~~~~~~~~ 345 (350)
T cd03785 269 AALGLPAILIPLPYAADDHQTANARALVKAGAAVLIPQEELTPERLAAALLELLSD---PERLKAMAEAARSLARPDAAE 345 (350)
T ss_pred HHhCCCEEEeecCCCCCCcHHHhHHHHHhCCCEEEEecCCCCHHHHHHHHHHHhcC---HHHHHHHHHHHHhcCCCCHHH
Confidence 99999999987654 24566667789999987 899999999999999 899999999999988888887
Q ss_pred HHHH
Q 002535 516 ETIE 519 (911)
Q Consensus 516 ~ia~ 519 (911)
++++
T Consensus 346 ~i~~ 349 (350)
T cd03785 346 RIAD 349 (350)
T ss_pred HHHh
Confidence 7764
No 67
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.90 E-value=3.7e-22 Score=222.14 Aligned_cols=314 Identities=14% Similarity=0.163 Sum_probs=205.6
Q ss_pred EEEEEeCCCCCChHHHHHHHHHHHHHHCCCeEEEEEeCCCcchhhhhhcCceEEEeccc---------------------
Q 002535 146 QLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTG--------------------- 204 (911)
Q Consensus 146 rIalI~~~L~~GGae~~v~~LAk~L~~~GyeV~V~t~~~g~~~~~~~~~gi~v~~l~~~--------------------- 204 (911)
+|.++.++. ||.......++++|.++||+|.+++...+......+..++++..++..
T Consensus 2 ~i~~~~g~~--~g~~~~~~~La~~L~~~g~eV~vv~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~ 79 (348)
T TIGR01133 2 KVVLAAGGT--GGHIFPALAVAEELIKRGVEVLWLGTKRGLEKRLVPKAGIEFYFIPVGGLRRKGSFRLIKTPLKLLKAV 79 (348)
T ss_pred eEEEEeCcc--HHHHhHHHHHHHHHHhCCCEEEEEeCCCcchhcccccCCCceEEEeccCcCCCChHHHHHHHHHHHHHH
Confidence 566555554 455557789999999999999999864432222223356665554421
Q ss_pred hhHHHhhhhcCccEEEEcCcchhHHHHHHhhCCCCCCCEEEEEcCchhhHHHHHHHhhcchhhHhhHHHHHhhcceEEec
Q 002535 205 REKASFVNWLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRATVVVFP 284 (911)
Q Consensus 205 ~~l~~lI~~~kpDIIhvhs~~~~~~ia~L~~~~~~giPvV~tiH~~~L~~~l~k~~~~~~d~lIs~~~~~~~~a~~vvfp 284 (911)
..+.++++..+||+||+|..... ..+.++.+ ..++|+|+..++ .......++. ++.++.++..
T Consensus 80 ~~l~~~i~~~~pDvVi~~~~~~~-~~~~~~~~-~~~~p~v~~~~~-~~~~~~~~~~--------------~~~~d~ii~~ 142 (348)
T TIGR01133 80 FQARRILKKFKPDAVIGFGGYVS-GPAGLAAK-LLGIPLFHHEQN-AVPGLTNKLL--------------SRFAKKVLIS 142 (348)
T ss_pred HHHHHHHHhcCCCEEEEcCCccc-HHHHHHHH-HcCCCEEEECCC-CCccHHHHHH--------------HHHhCeeEEC
Confidence 12344567789999999986652 44443332 456788754432 1111112222 2334444333
Q ss_pred CCccccccccCCCCCEEEeCCCCCCcccccccCchhhHHHHHhhCCCCCCeEEEEEEeccccccccccHH-HHHHHHHHh
Q 002535 285 DYVLPMMYSAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHA-LILRALLPL 363 (911)
Q Consensus 285 n~~l~ii~~~id~~ki~VIpg~gVD~~~f~~~~~~~k~~lR~~lgi~~d~~vIL~VGsrl~~~KGiKg~d-lLLeAl~~L 363 (911)
+...... + +..+|+ +|++...+... . .++.++++++.++++++|+.... |++. .+++|+..+
T Consensus 143 ~~~~~~~---~---~~~~i~-n~v~~~~~~~~--~----~~~~~~~~~~~~~i~~~gg~~~~----~~~~~~l~~a~~~l 205 (348)
T TIGR01133 143 FPGAKDH---F---EAVLVG-NPVRQEIRSLP--V----PRERFGLREGKPTILVLGGSQGA----KILNELVPKALAKL 205 (348)
T ss_pred chhHhhc---C---CceEEc-CCcCHHHhccc--c----hhhhcCCCCCCeEEEEECCchhH----HHHHHHHHHHHHHH
Confidence 2221100 0 235666 47876332211 1 12356777788899999855444 7754 456888877
Q ss_pred hhhcccCCCCCCCEEEEEEeCCCCCchHHHHHHHHHHcCCCCccEEEccccccHHHHHHHcCeeEEcccCCcCCccHHHH
Q 002535 364 FSEVSVENESNSPIKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILV 443 (911)
Q Consensus 364 ~~~~p~~~~~~~~vkLvIVGG~~~e~Y~~~Le~la~~lgL~~~~V~flG~v~dV~~~L~~ADVfVlPS~~E~qGFplvLL 443 (911)
.+.. +++++++|... .+.+++.++++++.+ .+.|. .. ++.++|+.||++|.+| | |++++
T Consensus 206 ~~~~---------~~~~~~~g~~~---~~~l~~~~~~~~l~~-~v~~~-~~-~~~~~l~~ad~~v~~~-----g-~~~l~ 264 (348)
T TIGR01133 206 AEKG---------IQIVHQTGKND---LEKVKNVYQELGIEA-IVTFI-DE-NMAAAYAAADLVISRA-----G-ASTVA 264 (348)
T ss_pred hhcC---------cEEEEECCcch---HHHHHHHHhhCCceE-EecCc-cc-CHHHHHHhCCEEEECC-----C-hhHHH
Confidence 6532 45544444322 167788888888765 55565 33 9999999999999865 3 78999
Q ss_pred HHHHcCCCEEecCCCc-------cccccccCccEEEEcCCC--HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhcCH
Q 002535 444 KALCFRKPIIAPDLSN-------IRKYVDDRVNGYLFPKEN--IKALTHIILQVITNGKISPFARNIASIGRRSVKNLMA 514 (911)
Q Consensus 444 EAMA~G~PVIaTd~gG-------i~EiV~dg~nGlLv~~~D--~eaLAeaI~~LLsd~~~p~~~~~mg~~ar~~ae~Fs~ 514 (911)
|||++|+|+|+++.++ ..+++.++.+|++++++| +++++++|.++++| ++.+++|++++++.++....
T Consensus 265 Ea~~~g~Pvv~~~~~~~~~~~~~~~~~i~~~~~G~~~~~~~~~~~~l~~~i~~ll~~---~~~~~~~~~~~~~~~~~~~~ 341 (348)
T TIGR01133 265 ELAAAGVPAILIPYPYAADDQYYNAKFLEDLGAGLVIRQKELLPEKLLEALLKLLLD---PANLEAMAEAARKLAKPDAA 341 (348)
T ss_pred HHHHcCCCEEEeeCCCCccchhhHHHHHHHCCCEEEEecccCCHHHHHHHHHHHHcC---HHHHHHHHHHHHhcCCccHH
Confidence 9999999999998754 235788888999999876 99999999999999 99999999999988877777
Q ss_pred HHHHH
Q 002535 515 LETIE 519 (911)
Q Consensus 515 e~ia~ 519 (911)
+++++
T Consensus 342 ~~i~~ 346 (348)
T TIGR01133 342 KRIAE 346 (348)
T ss_pred HHHHh
Confidence 76665
No 68
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=99.90 E-value=4.5e-22 Score=229.06 Aligned_cols=338 Identities=13% Similarity=0.114 Sum_probs=218.4
Q ss_pred ChHHHHHHHHHHHHHHCCCeEEEEEeC-CCcchhhhh---hcCceEEEecc--chhHHHhhhhcCccEEEEcCcchhHHH
Q 002535 157 DPQQLQMVTIAIALREIGYAIQVYSLE-DGRAHEVWR---NIGVPVAILQT--GREKASFVNWLNYDGILVNSLEAKVVI 230 (911)
Q Consensus 157 GGae~~v~~LAk~L~~~GyeV~V~t~~-~g~~~~~~~---~~gi~v~~l~~--~~~l~~lI~~~kpDIIhvhs~~~~~~i 230 (911)
.|-...+..+++.|.+.++++.|+... ......... ..++.+..++. ...+..+++..+||+||++.....+.+
T Consensus 60 ~Ge~~~~~~l~~~l~~~~~~~~i~~t~~t~~~~~~~~~~~~~~~~~~~~P~d~~~~~~~~l~~~~Pd~v~~~~~~~~~~~ 139 (425)
T PRK05749 60 VGETRAAIPLIRALRKRYPDLPILVTTMTPTGSERAQALFGDDVEHRYLPYDLPGAVRRFLRFWRPKLVIIMETELWPNL 139 (425)
T ss_pred HHHHHHHHHHHHHHHHhCCCCcEEEeCCCccHHHHHHHhcCCCceEEEecCCcHHHHHHHHHhhCCCEEEEEecchhHHH
Confidence 457788999999999987664442221 111111111 11344444443 345677889999999998855442222
Q ss_pred HHHhhCCCCCCCEEEEEcCchhhHHHHHHHhhcchhhHhhHHHHHhhcceEEecCCcccc--ccccCCCCCEEEeCCCCC
Q 002535 231 SNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRATVVVFPDYVLPM--MYSAFDAGNYYVIPGSPA 308 (911)
Q Consensus 231 a~L~~~~~~giPvV~tiH~~~L~~~l~k~~~~~~d~lIs~~~~~~~~a~~vvfpn~~l~i--i~~~id~~ki~VIpg~gV 308 (911)
...+ ...++|++++.|..... ....+. ..-...+..++.++.++..+..... ...+++.+ +.+++|...
T Consensus 140 l~~~--~~~~ip~vl~~~~~~~~-s~~~~~-----~~~~~~r~~~~~~d~ii~~S~~~~~~l~~~g~~~~-i~vi~n~~~ 210 (425)
T PRK05749 140 IAEL--KRRGIPLVLANARLSER-SFKRYQ-----KFKRFYRLLFKNIDLVLAQSEEDAERFLALGAKNE-VTVTGNLKF 210 (425)
T ss_pred HHHH--HHCCCCEEEEeccCChh-hHHHHH-----HHHHHHHHHHHhCCEEEECCHHHHHHHHHcCCCCC-cEecccccc
Confidence 2222 25678988765531111 111110 0111234455667777666555221 22344445 777876444
Q ss_pred CcccccccCchhhHHHHHhhCCCCCCeEEEEEEeccccccccccHHHHHHHHHHhhhhcccCCCCCCCEEEEEEe-CCCC
Q 002535 309 KAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILS-GDST 387 (911)
Q Consensus 309 D~~~f~~~~~~~k~~lR~~lgi~~d~~vIL~VGsrl~~~KGiKg~dlLLeAl~~L~~~~p~~~~~~~~vkLvIVG-G~~~ 387 (911)
|.... +........++++++ ++.++++++| . .. |+.+.+++|+..+.+++|+ ++|+|+| |+..
T Consensus 211 d~~~~-~~~~~~~~~~r~~~~--~~~~vil~~~-~-~~----~~~~~ll~A~~~l~~~~~~-------~~liivG~g~~r 274 (425)
T PRK05749 211 DIEVP-PELAARAATLRRQLA--PNRPVWIAAS-T-HE----GEEELVLDAHRALLKQFPN-------LLLILVPRHPER 274 (425)
T ss_pred cCCCC-hhhHHHHHHHHHHhc--CCCcEEEEeC-C-Cc----hHHHHHHHHHHHHHHhCCC-------cEEEEcCCChhh
Confidence 44211 111112345677776 3555676666 3 34 7789999999999887777 9999999 7653
Q ss_pred CchHHHHHHHHHHcCCCC------------ccEEEccccccHHHHHHHcCeeEE-cccCCcCCccHHHHHHHHcCCCEEe
Q 002535 388 SNYSVVIEAIAHNLHYPL------------GVVKHMAAEGDVDSVLNTADVVIY-GSFLEEQTFPEILVKALCFRKPIIA 454 (911)
Q Consensus 388 e~Y~~~Le~la~~lgL~~------------~~V~flG~v~dV~~~L~~ADVfVl-PS~~E~qGFplvLLEAMA~G~PVIa 454 (911)
.+.+++.++++|+.. ..|.+.+...++..+|+.||++++ ||..| ++|.+++|||+||+|||+
T Consensus 275 ---~~~l~~~~~~~gl~~~~~~~~~~~~~~~~v~l~~~~~el~~~y~~aDi~~v~~S~~e--~~g~~~lEAma~G~PVI~ 349 (425)
T PRK05749 275 ---FKEVEELLKKAGLSYVRRSQGEPPSADTDVLLGDTMGELGLLYAIADIAFVGGSLVK--RGGHNPLEPAAFGVPVIS 349 (425)
T ss_pred ---HHHHHHHHHhCCCcEEEccCCCCCCCCCcEEEEecHHHHHHHHHhCCEEEECCCcCC--CCCCCHHHHHHhCCCEEE
Confidence 257888888888852 134555556789999999999665 66666 689999999999999999
Q ss_pred cCC-CccccccccC-ccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHh
Q 002535 455 PDL-SNIRKYVDDR-VNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSVKNLMALETIEGYAMLLENVL 529 (911)
Q Consensus 455 Td~-gGi~EiV~dg-~nGlLv~~~D~eaLAeaI~~LLsd~~~p~~~~~mg~~ar~~ae~Fs~e~ia~~y~~Lye~vL 529 (911)
++. ++..++++.. .+|.+++++|+++|+++|.++++| ++.+++|+++|++.+++. ...++++.+++.+.+
T Consensus 350 g~~~~~~~e~~~~~~~~g~~~~~~d~~~La~~l~~ll~~---~~~~~~m~~~a~~~~~~~--~~~~~~~~~~l~~~l 421 (425)
T PRK05749 350 GPHTFNFKEIFERLLQAGAAIQVEDAEDLAKAVTYLLTD---PDARQAYGEAGVAFLKQN--QGALQRTLQLLEPYL 421 (425)
T ss_pred CCCccCHHHHHHHHHHCCCeEEECCHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHhC--ccHHHHHHHHHHHhc
Confidence 764 5566665542 368888899999999999999999 999999999999999554 245566666666544
No 69
>PHA01633 putative glycosyl transferase group 1
Probab=99.88 E-value=4.9e-21 Score=213.39 Aligned_cols=303 Identities=12% Similarity=0.062 Sum_probs=193.7
Q ss_pred CCCChHHHHHHHHHHHHHHCCCeEEEEEeCCCcchhhhhhcCceEEEeccchhHHHhhhhcCccEEEEcCcchhHHHHHH
Q 002535 154 LLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVNSLEAKVVISNI 233 (911)
Q Consensus 154 L~~GGae~~v~~LAk~L~~~GyeV~V~t~~~g~~~~~~~~~gi~v~~l~~~~~l~~lI~~~kpDIIhvhs~~~~~~ia~L 233 (911)
+..+....+...+++.|++.|.-|++++..-. .. ..+.+ +..++ .|.+.....+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~---~~~~~------------------~~~~~~~~~~~~~ 64 (335)
T PHA01633 8 MNYSSISNVSEDIAEVLRENGEIVTITKNPFY-IP-KAEKL---IVFIP------------------FHPPSLNPYLYAY 64 (335)
T ss_pred echhhhhhHHHHHHHHHHhCCcEEEEecCCcc-cC-ccceE---EEEee------------------cCCcccchHHhhh
Confidence 44556666778889999999988777763210 00 00000 11111 1111111111111
Q ss_pred hhCCCCCCCEEEEEcCchhhHHHHHHHhhcchhhHhhHHHHHhhcceEEecCCccccccccCCCCCEEEeCCCCCCcccc
Q 002535 234 MQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRATVVVFPDYVLPMMYSAFDAGNYYVIPGSPAKAWEA 313 (911)
Q Consensus 234 ~~~~~~giPvV~tiH~~~L~~~l~k~~~~~~d~lIs~~~~~~~~a~~vvfpn~~l~ii~~~id~~ki~VIpg~gVD~~~f 313 (911)
- ....+.|++.|+|+..-.....++..+.. .+++.+....+... ..++... + +|++ |+|...|
T Consensus 65 ~-~~~~~~~~~tt~~g~~~~~~y~~~m~~~~-~vIavS~~t~~~L~------------~~G~~~~-i-~I~~-GVD~~~f 127 (335)
T PHA01633 65 Y-QFKGKKYFYTTCDGIPNIEIVNKYLLQDV-KFIPNSKFSAENLQ------------EVGLQVD-L-PVFH-GINFKIV 127 (335)
T ss_pred h-hhcCCCceEEeeCCcCchHHHHHHHhcCC-EEEeCCHHHHHHHH------------HhCCCCc-e-eeeC-CCChhhc
Confidence 1 11234678888997432222333333322 33443333322211 1122222 3 3553 8888554
Q ss_pred cccCchhhHHHHHhhCCC-CCCeEEEEEEeccccccccccHHHHHHHHHHhhhhcccCCCCCCCEEEEEEeCCCCCchHH
Q 002535 314 DTNMDLYNDTVRVKMGFK-PDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILSGDSTSNYSV 392 (911)
Q Consensus 314 ~~~~~~~k~~lR~~lgi~-~d~~vIL~VGsrl~~~KGiKg~dlLLeAl~~L~~~~p~~~~~~~~vkLvIVGG~~~e~Y~~ 392 (911)
.+.. ....+.+++++.. ++.++++++| ++.+. ||++.+++|++.+.+++|+ ...+++++++|+.
T Consensus 128 ~p~~-~~~~~~r~~~~~~~~~~~~i~~vG-Rl~~~---KG~~~LI~A~~~L~~~~p~---~~~~i~l~ivG~~------- 192 (335)
T PHA01633 128 ENAE-KLVPQLKQKLDKDFPDTIKFGIVS-GLTKR---KNMDLMLQVFNELNTKYPD---IAKKIHFFVISHK------- 192 (335)
T ss_pred Cccc-hhhHHHHHHhCcCCCCCeEEEEEe-CCccc---cCHHHHHHHHHHHHHhCCC---ccccEEEEEEcHH-------
Confidence 4322 1124566666643 4677899999 55555 9999999999999887764 0123678777731
Q ss_pred HHHHHHHHcCCCCccEEEcc---c--cccHHHHHHHcCeeEEcccCCcCCccHHHHHHHHcCCCEEecCCCcccccccc-
Q 002535 393 VIEAIAHNLHYPLGVVKHMA---A--EGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSNIRKYVDD- 466 (911)
Q Consensus 393 ~Le~la~~lgL~~~~V~flG---~--v~dV~~~L~~ADVfVlPS~~E~qGFplvLLEAMA~G~PVIaTd~gGi~EiV~d- 466 (911)
..+++++++ +|+|+| . .+++.++|++||++|+||..| |||++++||||||+|||+++.++++|++.+
T Consensus 193 ----~~~~l~l~~-~V~f~g~~G~~~~~dl~~~y~~aDifV~PS~~E--gfGlvlLEAMA~G~PVVas~~~~l~Ei~g~~ 265 (335)
T PHA01633 193 ----QFTQLEVPA-NVHFVAEFGHNSREYIFAFYGAMDFTIVPSGTE--GFGMPVLESMAMGTPVIHQLMPPLDEFTSWQ 265 (335)
T ss_pred ----HHHHcCCCC-cEEEEecCCCCCHHHHHHHHHhCCEEEECCccc--cCCHHHHHHHHcCCCEEEccCCCceeecCCc
Confidence 124567777 899995 3 378999999999999999998 799999999999999999999999997542
Q ss_pred -----------------CccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHH
Q 002535 467 -----------------RVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSVKNLMALETIEGYA 522 (911)
Q Consensus 467 -----------------g~nGlLv~~~D~eaLAeaI~~LLsd~~~p~~~~~mg~~ar~~ae~Fs~e~ia~~y~ 522 (911)
...|++++..|+++++++|.+++.. .+ ....+.++++.+++|+|+++.++|.
T Consensus 266 ~~~Li~~~~v~~~~~~~~g~g~~~~~~d~~~la~ai~~~~~~---~~-~~~~~~~~~~~a~~f~~~~~~~~~~ 334 (335)
T PHA01633 266 WNLLIKSSKVEEYYDKEHGQKWKIHKFQIEDMANAIILAFEL---QD-REERSMKLKELAKKYDIRNLYTRFL 334 (335)
T ss_pred cceeeCCCCHHHhcCcccCceeeecCCCHHHHHHHHHHHHhc---cC-hhhhhHHHHHHHHhcCHHHHHHHhh
Confidence 2247788889999999999999776 32 3344778889999999999999885
No 70
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=99.88 E-value=1e-21 Score=196.90 Aligned_cols=167 Identities=20% Similarity=0.354 Sum_probs=148.1
Q ss_pred hHHHHHhhCCCCCCeEEEEEEeccccccccccHHHHHHHHHHhhhh-cccCCCCCCCEEEEEEe-CCCCCchHHHHHHHH
Q 002535 321 NDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSE-VSVENESNSPIKVMILS-GDSTSNYSVVIEAIA 398 (911)
Q Consensus 321 k~~lR~~lgi~~d~~vIL~VGsrl~~~KGiKg~dlLLeAl~~L~~~-~p~~~~~~~~vkLvIVG-G~~~e~Y~~~Le~la 398 (911)
++..+.+.+.+.++++|+++| ++... ||++.+++|+..+.++ .++ ++++|+| +... ..++..+
T Consensus 2 ~~~~~~~~~~~~~~~~il~~g-~~~~~---K~~~~li~a~~~l~~~~~~~-------~~l~i~G~~~~~----~~~~~~~ 66 (172)
T PF00534_consen 2 KDKLREKLKIPDKKKIILFIG-RLDPE---KGIDLLIEAFKKLKEKKNPN-------YKLVIVGDGEYK----KELKNLI 66 (172)
T ss_dssp HHHHHHHTTT-TTSEEEEEES-ESSGG---GTHHHHHHHHHHHHHHHHTT-------EEEEEESHCCHH----HHHHHHH
T ss_pred hHHHHHHcCCCCCCeEEEEEe-cCccc---cCHHHHHHHHHHHHhhcCCC-------eEEEEEcccccc----ccccccc
Confidence 466788888999999999999 45554 9999999999999875 666 9999999 6544 7888999
Q ss_pred HHcCCCCccEEEccccc--cHHHHHHHcCeeEEcccCCcCCccHHHHHHHHcCCCEEecCCCccccccccCccEEEEcCC
Q 002535 399 HNLHYPLGVVKHMAAEG--DVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSNIRKYVDDRVNGYLFPKE 476 (911)
Q Consensus 399 ~~lgL~~~~V~flG~v~--dV~~~L~~ADVfVlPS~~E~qGFplvLLEAMA~G~PVIaTd~gGi~EiV~dg~nGlLv~~~ 476 (911)
+.+++.+ +|.++|... ++..+|+.||++|+||..| |||.+++|||++|+|||+++.++..|++.++.+|+++++.
T Consensus 67 ~~~~~~~-~i~~~~~~~~~~l~~~~~~~di~v~~s~~e--~~~~~~~Ea~~~g~pvI~~~~~~~~e~~~~~~~g~~~~~~ 143 (172)
T PF00534_consen 67 EKLNLKE-NIIFLGYVPDDELDELYKSSDIFVSPSRNE--GFGLSLLEAMACGCPVIASDIGGNNEIINDGVNGFLFDPN 143 (172)
T ss_dssp HHTTCGT-TEEEEESHSHHHHHHHHHHTSEEEE-BSSB--SS-HHHHHHHHTT-EEEEESSTHHHHHSGTTTSEEEESTT
T ss_pred ccccccc-cccccccccccccccccccceecccccccc--ccccccccccccccceeeccccCCceeeccccceEEeCCC
Confidence 9999988 899999885 9999999999999999998 7999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q 002535 477 NIKALTHIILQVITNGKISPFARNIASIGRRS 508 (911)
Q Consensus 477 D~eaLAeaI~~LLsd~~~p~~~~~mg~~ar~~ 508 (911)
|+++++++|.+++++ ++.++.|+++++++
T Consensus 144 ~~~~l~~~i~~~l~~---~~~~~~l~~~~~~~ 172 (172)
T PF00534_consen 144 DIEELADAIEKLLND---PELRQKLGKNARER 172 (172)
T ss_dssp SHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHCC---HHHHHHHHHHhcCC
Confidence 999999999999999 99999999999874
No 71
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.87 E-value=1.5e-20 Score=213.06 Aligned_cols=333 Identities=10% Similarity=0.082 Sum_probs=216.4
Q ss_pred CCCEEEEEeCCCCCChHHHHHHHHHHHHHHCCCeEEEEEeCCCcc----hh---------------hhhh-c-Cc-eEEE
Q 002535 143 RKPQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRA----HE---------------VWRN-I-GV-PVAI 200 (911)
Q Consensus 143 rkprIalI~~~L~~GGae~~v~~LAk~L~~~GyeV~V~t~~~g~~----~~---------------~~~~-~-gi-~v~~ 200 (911)
+.+||+++..+. .+|....+..++++|.++|++|.++....... .. .+.- . .. ....
T Consensus 3 ~~~rili~t~~~-G~GH~~~a~al~~~l~~~g~~~~~~~d~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~ 81 (380)
T PRK13609 3 KNPKVLILTAHY-GNGHVQVAKTLEQTFRQKGIKDVIVCDLFGESHPVITEITKYLYLKSYTIGKELYRLFYYGVEKIYD 81 (380)
T ss_pred CCCeEEEEEcCC-CchHHHHHHHHHHHHHhcCCCcEEEEEhHHhcchHHHHHHHHHHHHHHHHhHHHHHHHHhccCcccc
Confidence 567888888776 55888999999999999999866664432110 00 0000 0 00 0000
Q ss_pred ec-c-------chhHHHhhhhcCccEEEEcCcchhHHHHHHhhCCCCCCCEEEEEcCchhhHHHHHHHhhcchhhHhhHH
Q 002535 201 LQ-T-------GREKASFVNWLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWK 272 (911)
Q Consensus 201 l~-~-------~~~l~~lI~~~kpDIIhvhs~~~~~~ia~L~~~~~~giPvV~tiH~~~L~~~l~k~~~~~~d~lIs~~~ 272 (911)
.. . ...+.++++..+||+||++++... +..+......++|++..+++.... ..+..+
T Consensus 82 ~~~~~~~~~~~~~~l~~~l~~~~pD~Vi~~~~~~~--~~~~~~~~~~~ip~~~~~td~~~~---~~~~~~---------- 146 (380)
T PRK13609 82 KKIFSWYANFGRKRLKLLLQAEKPDIVINTFPIIA--VPELKKQTGISIPTYNVLTDFCLH---KIWVHR---------- 146 (380)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCcCEEEEcChHHH--HHHHHHhcCCCCCeEEEeCCCCCC---cccccC----------
Confidence 00 0 133556677789999999877652 333333345678987555432111 112222
Q ss_pred HHHhhcceEEecCCcc--ccccccCCCCCEEEeCCCCCCcccccccCchhhHHHHHhhCCCCCCeEEEEEEecccccccc
Q 002535 273 KVFNRATVVVFPDYVL--PMMYSAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLW 350 (911)
Q Consensus 273 ~~~~~a~~vvfpn~~l--~ii~~~id~~ki~VIpg~gVD~~~f~~~~~~~k~~lR~~lgi~~d~~vIL~VGsrl~~~KGi 350 (911)
.++.++.++... .+...+++.+++.++. +|++.. |. ....+..+++++++++++++++++|++....
T Consensus 147 ----~ad~i~~~s~~~~~~l~~~gi~~~ki~v~G-~p~~~~-f~--~~~~~~~~~~~~~l~~~~~~il~~~G~~~~~--- 215 (380)
T PRK13609 147 ----EVDRYFVATDHVKKVLVDIGVPPEQVVETG-IPIRSS-FE--LKINPDIIYNKYQLCPNKKILLIMAGAHGVL--- 215 (380)
T ss_pred ----CCCEEEECCHHHHHHHHHcCCChhHEEEEC-cccChH-Hc--CcCCHHHHHHHcCCCCCCcEEEEEcCCCCCC---
Confidence 333333333221 1122345566777764 455431 11 1112345788899988776666665565554
Q ss_pred ccHHHHHHHHHHhhhhcccCCCCCCCEEEEEEeCCCCCchHHHHHHHHHHcCCCCccEEEccccccHHHHHHHcCeeEEc
Q 002535 351 LEHALILRALLPLFSEVSVENESNSPIKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNTADVVIYG 430 (911)
Q Consensus 351 Kg~dlLLeAl~~L~~~~p~~~~~~~~vkLvIVGG~~~e~Y~~~Le~la~~lgL~~~~V~flG~v~dV~~~L~~ADVfVlP 430 (911)
|++..+++++.. .++ ++++++||.. ....+.+++++++++ + +|+++|+++++.++|+.||++|.
T Consensus 216 k~~~~li~~l~~----~~~-------~~~viv~G~~-~~~~~~l~~~~~~~~--~-~v~~~g~~~~~~~l~~~aD~~v~- 279 (380)
T PRK13609 216 GNVKELCQSLMS----VPD-------LQVVVVCGKN-EALKQSLEDLQETNP--D-ALKVFGYVENIDELFRVTSCMIT- 279 (380)
T ss_pred cCHHHHHHHHhh----CCC-------cEEEEEeCCC-HHHHHHHHHHHhcCC--C-cEEEEechhhHHHHHHhccEEEe-
Confidence 788777887753 244 8998887532 123466777776544 4 69999999999999999999985
Q ss_pred ccCCcCCccHHHHHHHHcCCCEEecC-CCccc----cccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 002535 431 SFLEEQTFPEILVKALCFRKPIIAPD-LSNIR----KYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIG 505 (911)
Q Consensus 431 S~~E~qGFplvLLEAMA~G~PVIaTd-~gGi~----EiV~dg~nGlLv~~~D~eaLAeaI~~LLsd~~~p~~~~~mg~~a 505 (911)
+ +.|++++|||+||+|||+++ .+|.. +++.+ +|..+...|+++++++|.++++| ++.+++|++++
T Consensus 280 ---~--~gg~t~~EA~a~g~PvI~~~~~~g~~~~n~~~~~~--~G~~~~~~~~~~l~~~i~~ll~~---~~~~~~m~~~~ 349 (380)
T PRK13609 280 ---K--PGGITLSEAAALGVPVILYKPVPGQEKENAMYFER--KGAAVVIRDDEEVFAKTEALLQD---DMKLLQMKEAM 349 (380)
T ss_pred ---C--CCchHHHHHHHhCCCEEECCCCCCcchHHHHHHHh--CCcEEEECCHHHHHHHHHHHHCC---HHHHHHHHHHH
Confidence 2 24899999999999999976 55531 23332 45555668999999999999999 99999999999
Q ss_pred HHHHHhcCHHHHHHHHHHHHHHH
Q 002535 506 RRSVKNLMALETIEGYAMLLENV 528 (911)
Q Consensus 506 r~~ae~Fs~e~ia~~y~~Lye~v 528 (911)
++..+.++++++++.+.++++..
T Consensus 350 ~~~~~~~s~~~i~~~i~~~~~~~ 372 (380)
T PRK13609 350 KSLYLPEPADHIVDDILAENHVE 372 (380)
T ss_pred HHhCCCchHHHHHHHHHHhhhhh
Confidence 98888899999999998887654
No 72
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=99.87 E-value=1.8e-21 Score=226.96 Aligned_cols=290 Identities=9% Similarity=0.030 Sum_probs=194.2
Q ss_pred CccEEEEcCcchhHHHHHHhhCCCCCCCEEEEEcCch----hhH------HHHHHHhhcchhhHh---hH-HHHHhhcce
Q 002535 215 NYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGT----LAT------RARNYASSGQLELLN---DW-KKVFNRATV 280 (911)
Q Consensus 215 kpDIIhvhs~~~~~~ia~L~~~~~~giPvV~tiH~~~----L~~------~l~k~~~~~~d~lIs---~~-~~~~~~a~~ 280 (911)
..|+|++|.+... .+..++.+...+.|+++..|..- ++. .+.+.. ..+|.+.. .+ +.-+..++.
T Consensus 131 ~~d~iwihDyhl~-llp~~lr~~~~~~~i~~f~HipfP~~e~~~~lp~~~~ll~~~-l~~D~igF~t~~~~~~Fl~~~~~ 208 (460)
T cd03788 131 PGDLVWVHDYHLL-LLPQMLRERGPDARIGFFLHIPFPSSEIFRCLPWREELLRGL-LGADLIGFQTERYARNFLSCCSR 208 (460)
T ss_pred CCCEEEEeChhhh-HHHHHHHhhCCCCeEEEEEeCCCCChHHHhhCCChHHHHHHH-hcCCEEEECCHHHHHHHHHHHHH
Confidence 5799999999774 66666655566789999999621 111 111111 00111100 11 111111221
Q ss_pred EEecCCc--cccccccCCCCCEEEeCCCCCCcccccccCchh--hHHHHHhhCCCCCCeEEEEEEeccccccccccHHHH
Q 002535 281 VVFPDYV--LPMMYSAFDAGNYYVIPGSPAKAWEADTNMDLY--NDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALI 356 (911)
Q Consensus 281 vvfpn~~--l~ii~~~id~~ki~VIpg~gVD~~~f~~~~~~~--k~~lR~~lgi~~d~~vIL~VGsrl~~~KGiKg~dlL 356 (911)
+.-++.. ..+.+.+ ...++.++| +|||+..|.+..... +...++..+..+++++|+++| ++.+. ||++.+
T Consensus 209 ~l~~~~~~~~~i~~~g-~~~~i~vip-~GID~~~f~~~~~~~~~~~~~~~~~~~~~~~~~il~vg-Rl~~~---Kgi~~l 282 (460)
T cd03788 209 LLGLEVTDDGGVEYGG-RRVRVGAFP-IGIDPDAFRKLAASPEVQERAAELRERLGGRKLIVGVD-RLDYS---KGIPER 282 (460)
T ss_pred HcCCcccCCceEEECC-EEEEEEEEe-CeEcHHHHHHHhcCchhHHHHHHHHHhcCCCEEEEEec-Ccccc---CCHHHH
Confidence 1111111 0111111 124578888 599987665432221 333444455566788999999 66665 999999
Q ss_pred HHHHHHhhhhcccCCCCCCCEEEEEEeCCC------CCchHHHHHHHHHHcCCCC-----ccEEE-ccc--cccHHHHHH
Q 002535 357 LRALLPLFSEVSVENESNSPIKVMILSGDS------TSNYSVVIEAIAHNLHYPL-----GVVKH-MAA--EGDVDSVLN 422 (911)
Q Consensus 357 LeAl~~L~~~~p~~~~~~~~vkLvIVGG~~------~e~Y~~~Le~la~~lgL~~-----~~V~f-lG~--v~dV~~~L~ 422 (911)
++|+..+.+++|+ ...+++|+++|++. ...+...+++++.+++... ..|.+ .|. .+++..+|+
T Consensus 283 l~A~~~ll~~~p~---~~~~v~Lv~vg~~~~g~~~~~~~l~~~l~~~v~~in~~~g~~~~~~v~~~~g~v~~~el~~~y~ 359 (460)
T cd03788 283 LLAFERLLERYPE---WRGKVVLVQIAVPSRTDVPEYQELRREVEELVGRINGKFGTLDWTPVRYLYRSLPREELAALYR 359 (460)
T ss_pred HHHHHHHHHhChh---hcCCEEEEEEccCCCcCcHHHHHHHHHHHHHHHHHHhccCCCCceeEEEEeCCCCHHHHHHHHH
Confidence 9999999888775 11236889888322 1234555666655543211 12554 454 389999999
Q ss_pred HcCeeEEcccCCcCCccHHHHHHHHcCCC----EEecCCCccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCc-HH
Q 002535 423 TADVVIYGSFLEEQTFPEILVKALCFRKP----IIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKIS-PF 497 (911)
Q Consensus 423 ~ADVfVlPS~~E~qGFplvLLEAMA~G~P----VIaTd~gGi~EiV~dg~nGlLv~~~D~eaLAeaI~~LLsd~~~p-~~ 497 (911)
.||++|+||..| |||++++||||||+| ||+|+.+|..+. +.+|+++++.|+++++++|.+++++ + +.
T Consensus 360 ~aDv~v~pS~~E--g~~lv~lEAma~g~p~~g~vV~S~~~G~~~~---~~~g~lv~p~d~~~la~ai~~~l~~---~~~e 431 (460)
T cd03788 360 AADVALVTPLRD--GMNLVAKEYVACQDDDPGVLILSEFAGAAEE---LSGALLVNPYDIDEVADAIHRALTM---PLEE 431 (460)
T ss_pred hccEEEeCcccc--ccCcccceeEEEecCCCceEEEeccccchhh---cCCCEEECCCCHHHHHHHHHHHHcC---CHHH
Confidence 999999999998 899999999999999 999999888877 4579999999999999999999997 6 56
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHH
Q 002535 498 ARNIASIGRRSVKNLMALETIEGYAM 523 (911)
Q Consensus 498 ~~~mg~~ar~~ae~Fs~e~ia~~y~~ 523 (911)
++++++++++.+++|+++..++.|.+
T Consensus 432 ~~~~~~~~~~~v~~~~~~~w~~~~l~ 457 (460)
T cd03788 432 RRERHRKLREYVRTHDVQAWANSFLD 457 (460)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 66888999999999999999998865
No 73
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=99.87 E-value=1.5e-20 Score=218.50 Aligned_cols=303 Identities=13% Similarity=0.104 Sum_probs=192.9
Q ss_pred cCccEEEEcCcchhHHHHHHhhCCCCCCCEEEEEcCchhhHH-----------HHHHH-----h-hcchhhHhhHHHHHh
Q 002535 214 LNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATR-----------ARNYA-----S-SGQLELLNDWKKVFN 276 (911)
Q Consensus 214 ~kpDIIhvhs~~~~~~ia~L~~~~~~giPvV~tiH~~~L~~~-----------l~k~~-----~-~~~d~lIs~~~~~~~ 276 (911)
.++|++|+|.+... .....+.+....+|+|+|+|...+.+. +.++. . +......+.......
T Consensus 147 ~~~dViH~HeWm~g-~a~~~lK~~~~~VptVfTtHAT~~GR~l~~g~~~~y~~l~~~~~d~eA~~~~I~~r~~iE~~aa~ 225 (590)
T cd03793 147 EPAVVAHFHEWQAG-VGLPLLRKRKVDVSTIFTTHATLLGRYLCAGNVDFYNNLDYFDVDKEAGKRGIYHRYCIERAAAH 225 (590)
T ss_pred CCCeEEEEcchhHh-HHHHHHHHhCCCCCEEEEecccccccccccCCcccchhhhhcchhhhhhcccchHHHHHHHHHHh
Confidence 57999999999984 444444434678999999997433321 11110 0 111122234455666
Q ss_pred hcceEEecCCccccc---cccCCCCCEEEeCCCCCCcccccccCch--------------hhHHHHHhhCCCCCCeEEEE
Q 002535 277 RATVVVFPDYVLPMM---YSAFDAGNYYVIPGSPAKAWEADTNMDL--------------YNDTVRVKMGFKPDDLVIAI 339 (911)
Q Consensus 277 ~a~~vvfpn~~l~ii---~~~id~~ki~VIpg~gVD~~~f~~~~~~--------------~k~~lR~~lgi~~d~~vIL~ 339 (911)
.++.+...+..+... .-+.++++ |||| |+|+..|...... .+..++..+++++++.++++
T Consensus 226 ~Ad~fttVS~it~~E~~~Ll~~~pd~--ViPN-Gid~~~f~~~~e~~~~~~~~k~ki~~f~~~~~~~~~~~~~d~tli~f 302 (590)
T cd03793 226 CAHVFTTVSEITAYEAEHLLKRKPDV--VLPN-GLNVKKFSALHEFQNLHAQSKEKINEFVRGHFYGHYDFDLDKTLYFF 302 (590)
T ss_pred hCCEEEECChHHHHHHHHHhCCCCCE--EeCC-CcchhhcccchhhhhhhHHhhhhhhHHHHHHHhhhcCCCCCCeEEEE
Confidence 777777666552111 11223333 8884 9999776554311 02234666788888888877
Q ss_pred -EEecccc-ccccccHHHHHHHHHHhhhhcccCCCCCCCEEEEEEeCCCC---------CchHHHHH-------------
Q 002535 340 -VGTQFMY-RGLWLEHALILRALLPLFSEVSVENESNSPIKVMILSGDST---------SNYSVVIE------------- 395 (911)
Q Consensus 340 -VGsrl~~-~KGiKg~dlLLeAl~~L~~~~p~~~~~~~~vkLvIVGG~~~---------e~Y~~~Le------------- 395 (911)
+| |..+ + ||++.+|+|+.+|.......+.+..-+-|+|+=+... +.....++
T Consensus 303 ~~G-R~e~~n---KGiDvlIeAl~rLn~~l~~~~~~~tVvafii~p~~~~~~~~~~l~g~~~~~~l~~~~~~i~~~i~~~ 378 (590)
T cd03793 303 TAG-RYEFSN---KGADMFLEALARLNYLLKVEGSDTTVVAFFIMPAKTNNFNVESLKGQAVRKQLRDTVNSVKEKIGKR 378 (590)
T ss_pred Eee-cccccc---CCHHHHHHHHHHHHHHHHhcCCCCeEEEEEEecCccCCcCHHhhcchHHHHHHHHHHHHHHHHhhhh
Confidence 67 6655 7 9999999999999765433222222344454442100 01011111
Q ss_pred ------------------------------------------------------HHHHHcCCCC-----ccEEEcc-cc-
Q 002535 396 ------------------------------------------------------AIAHNLHYPL-----GVVKHMA-AE- 414 (911)
Q Consensus 396 ------------------------------------------------------~la~~lgL~~-----~~V~flG-~v- 414 (911)
..+++.++-| .+|.|.+ +.
T Consensus 379 ~~~~~l~~~~~~~~~~~~~~~~~~~kr~~~~~~~~~~~p~~tH~~~~~~~D~il~~~r~~~l~N~~~drVkvif~P~~L~ 458 (590)
T cd03793 379 LFEAALKGKLPDLEELLDKEDKVMLKRRIFALQRHSLPPVVTHNMVDDANDPILNHIRRIQLFNSPEDRVKVVFHPEFLS 458 (590)
T ss_pred hhhHhhccCCCChhhhcchhhHHHHHHHHHhhccCCCCCeeeecCCcCccCHHHHHHHHhcCcCCCCCeEEEEEcccccC
Confidence 1112222322 1244444 11
Q ss_pred -------ccHHHHHHHcCeeEEcccCCcCCccHHHHHHHHcCCCEEecCCCcc----ccccccC-ccEEEEc-------C
Q 002535 415 -------GDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSNI----RKYVDDR-VNGYLFP-------K 475 (911)
Q Consensus 415 -------~dV~~~L~~ADVfVlPS~~E~qGFplvLLEAMA~G~PVIaTd~gGi----~EiV~dg-~nGlLv~-------~ 475 (911)
.+..++|+.||++|+||.+| |||++++||||||+|||+|+.+|+ .|++.++ ..|+++. +
T Consensus 459 ~~~~~~g~~y~E~~~g~dl~v~PS~yE--~fG~~~lEAma~G~PvI~t~~~gf~~~v~E~v~~~~~~gi~V~~r~~~~~~ 536 (590)
T cd03793 459 STNPLLGLDYEEFVRGCHLGVFPSYYE--PWGYTPAECTVMGIPSITTNLSGFGCFMEEHIEDPESYGIYIVDRRFKSPD 536 (590)
T ss_pred CCCCcCCcchHHHhhhceEEEeccccC--CCCcHHHHHHHcCCCEEEccCcchhhhhHHHhccCCCceEEEecCCccchH
Confidence 34788999999999999999 799999999999999999999998 5666554 3577776 4
Q ss_pred CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH--HHHHhcCHHHHHHHHHHHHHHHhc
Q 002535 476 ENIKALTHIILQVITNGKISPFARNIASIGR--RSVKNLMALETIEGYAMLLENVLK 530 (911)
Q Consensus 476 ~D~eaLAeaI~~LLsd~~~p~~~~~mg~~ar--~~ae~Fs~e~ia~~y~~Lye~vL~ 530 (911)
.++++++++|.++++. +.++++..+++ +.++.|+|+++++.|.+.|+.+++
T Consensus 537 e~v~~La~~m~~~~~~----~~r~~~~~r~~~~r~s~~f~W~~~~~~Y~~A~~~Al~ 589 (590)
T cd03793 537 ESVQQLTQYMYEFCQL----SRRQRIIQRNRTERLSDLLDWRNLGRYYRKARQLALS 589 (590)
T ss_pred HHHHHHHHHHHHHhCC----cHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhh
Confidence 5688899999999854 56666655555 667889999999999999988764
No 74
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=99.85 E-value=9.7e-20 Score=208.11 Aligned_cols=370 Identities=16% Similarity=0.137 Sum_probs=233.5
Q ss_pred CCEEEEEeCCCCCChHHHHHHHHHHHHHH---------CCCeEEEEEeCCCcc------hhhhhhcC----ceEEE--ec
Q 002535 144 KPQLALVFPDLLIDPQQLQMVTIAIALRE---------IGYAIQVYSLEDGRA------HEVWRNIG----VPVAI--LQ 202 (911)
Q Consensus 144 kprIalI~~~L~~GGae~~v~~LAk~L~~---------~GyeV~V~t~~~g~~------~~~~~~~g----i~v~~--l~ 202 (911)
..+++++.+++.+||++......+-.+.. .|++|.+++.-.... .-...... +.+.. ++
T Consensus 34 ~~~~~~~~~~~~~gg~er~~v~~~~~l~s~~~~lg~~d~G~qV~~l~~h~~al~~~~~~~~~~~~l~~~~~i~vv~~~lP 113 (495)
T KOG0853|consen 34 FEHVTFIHPDLGIGGAERLVVDAAVHLLSGQDVLGLPDTGGQVVYLTSHEDALEMPLLLRCFAETLDGTPPILVVGDWLP 113 (495)
T ss_pred chhheeeccccccCchHHHhHHHHHHHHhcccccCCCCCCceEEEEehhhhhhcchHHHHHHHHHhcCCCceEEEEeecC
Confidence 35678999999999999999999999999 999999998643221 11111111 11111 01
Q ss_pred cch------------------hHHHhhhh-cCccEEEEcCcchhHHHHHHhhCCCCCCCEEEEEcCchh--hHHH--HHH
Q 002535 203 TGR------------------EKASFVNW-LNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTL--ATRA--RNY 259 (911)
Q Consensus 203 ~~~------------------~l~~lI~~-~kpDIIhvhs~~~~~~ia~L~~~~~~giPvV~tiH~~~L--~~~l--~k~ 259 (911)
... ......++ .++|.|++........+...+..+....++.|.+|...- +.+. .+.
T Consensus 114 ~~~~~~~~~~~~~~~~~il~~~~~~~~k~~~~~d~~i~d~~~~~~~l~~~~~~p~~~~~i~~~~h~~~~lla~r~g~~~~ 193 (495)
T KOG0853|consen 114 RAMGQFLEQVAGCAYLRILRIPFGILFKWAEKVDPIIEDFVSACVPLLKQLSGPDVIIKIYFYCHFPDSLLAKRLGVLKV 193 (495)
T ss_pred cccchhhhhhhccceeEEEEeccchhhhhhhhhceeecchHHHHHHHHHHhcCCcccceeEEeccchHHHhccccCccce
Confidence 000 00111222 467888877765543444444322235677888887321 1110 000
Q ss_pred HhhcchhhHhhHHHHHhhcceEEecCCcccc----ccccCCCCCEEEeCCCCCCcccccc--cCch--hhHHHHHhhCCC
Q 002535 260 ASSGQLELLNDWKKVFNRATVVVFPDYVLPM----MYSAFDAGNYYVIPGSPAKAWEADT--NMDL--YNDTVRVKMGFK 331 (911)
Q Consensus 260 ~~~~~d~lIs~~~~~~~~a~~vvfpn~~l~i----i~~~id~~ki~VIpg~gVD~~~f~~--~~~~--~k~~lR~~lgi~ 331 (911)
... ..+-.........+.++...++.+.. ....++..++.+.. ..+|...+.. +.+. .+...|...+..
T Consensus 194 l~~--~~l~~~e~e~~~~~~~~~~ns~~~~~~f~~~~~~L~~~d~~~~y-~ei~~s~~~~~~~~~~~~~~~~~r~~~~v~ 270 (495)
T KOG0853|consen 194 LYR--HALDKIEEETTGLAWKILVNSYFTKRQFKATFVSLSNSDITSTY-PEIDGSWFTYGQYESHLELRLPVRLYRGVS 270 (495)
T ss_pred eeh--hhhhhhhhhhhhccceEecchhhhhhhhhhhhhhcCCCCcceee-ccccchhccccccccchhcccccceeeeec
Confidence 000 00000111112222322222221100 01112222232322 1344322111 1111 133344455666
Q ss_pred CCCeEEEEEEeccccccccccHHHHHHHHHHhhhhcccCCCCCCCEEEEEEe--CC-----CCCchHHHHHHHHHHcCCC
Q 002535 332 PDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILS--GD-----STSNYSVVIEAIAHNLHYP 404 (911)
Q Consensus 332 ~d~~vIL~VGsrl~~~KGiKg~dlLLeAl~~L~~~~p~~~~~~~~vkLvIVG--G~-----~~e~Y~~~Le~la~~lgL~ 404 (911)
..+....-+. ++++. |+++++++|+..+....++ ......+++++| |. ....|..+++++++++++.
T Consensus 271 ~~d~~~~siN-~~~pg---kd~~l~l~a~~~~~~~i~~--~~~~~~hl~~~g~~G~d~~~sen~~~~~el~~lie~~~l~ 344 (495)
T KOG0853|consen 271 GIDRFFPSIN-RFEPG---KDQDLALPAFTLLHDSIPE--PSISSEHLVVAGSRGYDERDSENVEYLKELLSLIEEYDLL 344 (495)
T ss_pred ccceEeeeee-ecCCC---CCceeehhhHHhhhcccCC--CCCCceEEEEecCCCccccchhhHHHHHHHHHHHHHhCcc
Confidence 6677777777 77777 9999999999999887753 334558999999 52 2235788999999999996
Q ss_pred CccEEEccccccHHHHHHHcCe--eE-EcccCCcCCccHHHHHHHHcCCCEEecCCCccccccccCccEEEEcCCCHH--
Q 002535 405 LGVVKHMAAEGDVDSVLNTADV--VI-YGSFLEEQTFPEILVKALCFRKPIIAPDLSNIRKYVDDRVNGYLFPKENIK-- 479 (911)
Q Consensus 405 ~~~V~flG~v~dV~~~L~~ADV--fV-lPS~~E~qGFplvLLEAMA~G~PVIaTd~gGi~EiV~dg~nGlLv~~~D~e-- 479 (911)
...|.|+....+...|...||+ +. .|.. | -||++++|||+||+|||||+.||..|+|.++.+|+++++ +.+
T Consensus 345 g~~v~~~~s~~~~~~yrl~adt~~v~~qPa~-E--~FGiv~IEAMa~glPvvAt~~GGP~EiV~~~~tG~l~dp-~~e~~ 420 (495)
T KOG0853|consen 345 GQFVWFLPSTTRVAKYRLAADTKGVLYQPAN-E--HFGIVPIEAMACGLPVVATNNGGPAEIVVHGVTGLLIDP-GQEAV 420 (495)
T ss_pred CceEEEecCCchHHHHHHHHhcceEEecCCC-C--CccceeHHHHhcCCCEEEecCCCceEEEEcCCcceeeCC-chHHH
Confidence 5488888877666666666654 33 3444 7 499999999999999999999999999999999999999 666
Q ss_pred -HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHh
Q 002535 480 -ALTHIILQVITNGKISPFARNIASIGRRSVKN-LMALETIEGYAMLLENVL 529 (911)
Q Consensus 480 -aLAeaI~~LLsd~~~p~~~~~mg~~ar~~ae~-Fs~e~ia~~y~~Lye~vL 529 (911)
.+|++|.++..| |+.+.+|+++|++++++ |+|..+.++..++....+
T Consensus 421 ~~~a~~~~kl~~~---p~l~~~~~~~G~~rV~e~fs~~~~~~ri~~~~~~~~ 469 (495)
T KOG0853|consen 421 AELADALLKLRRD---PELWARMGKNGLKRVKEMFSWQHYSERIASVLGKYL 469 (495)
T ss_pred HHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHhcC
Confidence 699999999999 99999999999999955 999888888888877554
No 75
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=99.85 E-value=1.2e-19 Score=211.00 Aligned_cols=285 Identities=11% Similarity=0.038 Sum_probs=189.5
Q ss_pred CccEEEEcCcchhHHHHHHhhCCCCCCCEEEEEcCchhhHHHHHHHhhcchhhHhhHHHHHhhcceEEecCCc-------
Q 002535 215 NYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRATVVVFPDYV------- 287 (911)
Q Consensus 215 kpDIIhvhs~~~~~~ia~L~~~~~~giPvV~tiH~~~L~~~l~k~~~~~~d~lIs~~~~~~~~a~~vvfpn~~------- 287 (911)
.-|+|.+|..... .+..++.+.....++.+..|..-....+-+.+ .....+ -..+..++.+.|.+..
T Consensus 127 ~~d~vwvhDYhl~-l~p~~lr~~~~~~~igfFlHipfP~~e~f~~l-p~r~~i----l~gll~~dligF~t~~~~~~Fl~ 200 (456)
T TIGR02400 127 PGDIVWVHDYHLM-LLPAMLRELGVQNKIGFFLHIPFPSSEIYRTL-PWRREL----LEGLLAYDLVGFQTYDDARNFLS 200 (456)
T ss_pred CCCEEEEecchhh-HHHHHHHhhCCCCeEEEEEeCCCCChHHHhhC-CcHHHH----HHHHhcCCEEEECCHHHHHHHHH
Confidence 4589999998884 66777766566778889999621111100000 000111 0111122222222211
Q ss_pred ------------cccccccCCCCCEEEeCCCCCCcccccccCchh-----hHHHHHhhCCCCCCeEEEEEEecccccccc
Q 002535 288 ------------LPMMYSAFDAGNYYVIPGSPAKAWEADTNMDLY-----NDTVRVKMGFKPDDLVIAIVGTQFMYRGLW 350 (911)
Q Consensus 288 ------------l~ii~~~id~~ki~VIpg~gVD~~~f~~~~~~~-----k~~lR~~lgi~~d~~vIL~VGsrl~~~KGi 350 (911)
..+.+. -...++.++| +|||+..|.+..... ...+|+++ +++++|++|| ++.+.
T Consensus 201 ~~~~~l~~~~~~~~~~~~-g~~~~v~viP-~GID~~~f~~~~~~~~~~~~~~~lr~~~---~~~~vIl~Vg-RLd~~--- 271 (456)
T TIGR02400 201 AVSRELGLETLPNGVESG-GRTVRVGAFP-IGIDVDRFAEQAKKPSVQKRIAELRESL---KGRKLIIGVD-RLDYS--- 271 (456)
T ss_pred HHHHHhCCcccCCceEEC-CcEEEEEEec-CcCCHHHHHHHhcChhHHHHHHHHHHHc---CCCeEEEEcc-ccccc---
Confidence 011111 1234678888 599997765432211 12356655 3667999999 66666
Q ss_pred ccHHHHHHHHHHhhhhcccCCCCCCCEEEEEEeCCCCC--chHHHHHHHHHHc----C----CCC-ccEEEcc-c--ccc
Q 002535 351 LEHALILRALLPLFSEVSVENESNSPIKVMILSGDSTS--NYSVVIEAIAHNL----H----YPL-GVVKHMA-A--EGD 416 (911)
Q Consensus 351 Kg~dlLLeAl~~L~~~~p~~~~~~~~vkLvIVGG~~~e--~Y~~~Le~la~~l----g----L~~-~~V~flG-~--v~d 416 (911)
||+..+++|++.+.+++|+ ...++.++++|++... .....+++.++++ + ..+ ..+.+++ . .++
T Consensus 272 KGi~~ll~A~~~ll~~~p~---~~~~v~Lv~v~~p~rg~~~~~~~l~~~i~~lv~~in~~~~~~~~~pv~~l~~~~~~~e 348 (456)
T TIGR02400 272 KGLPERLLAFERFLEEHPE---WRGKVVLVQIAVPSRGDVPEYQQLRRQVEELVGRINGRFGTLDWTPIRYLNRSYDREE 348 (456)
T ss_pred cCHHHHHHHHHHHHHhCcc---ccCceEEEEEecCCccCchHHHHHHHHHHHHHHHHHhccCCCCCccEEEEcCCCCHHH
Confidence 9999999999999888875 1223678888743221 1123344444432 1 111 0144444 3 389
Q ss_pred HHHHHHHcCeeEEcccCCcCCccHHHHHHHHcCCC----EEecCCCccccccccCccEEEEcCCCHHHHHHHHHHHHHcC
Q 002535 417 VDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKP----IIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITNG 492 (911)
Q Consensus 417 V~~~L~~ADVfVlPS~~E~qGFplvLLEAMA~G~P----VIaTd~gGi~EiV~dg~nGlLv~~~D~eaLAeaI~~LLsd~ 492 (911)
+..+|+.||++|+||..| |||++++||||||+| ||+|+.+|..+.+. +|++++|.|++++|++|.+++++
T Consensus 349 l~aly~aaDv~vv~S~~E--G~~Lv~lEamA~g~P~~g~vVlS~~~G~~~~l~---~gllVnP~d~~~lA~aI~~aL~~- 422 (456)
T TIGR02400 349 LMALYRAADVGLVTPLRD--GMNLVAKEYVAAQDPKDGVLILSEFAGAAQELN---GALLVNPYDIDGMADAIARALTM- 422 (456)
T ss_pred HHHHHHhCcEEEECcccc--ccCccHHHHHHhcCCCCceEEEeCCCCChHHhC---CcEEECCCCHHHHHHHHHHHHcC-
Confidence 999999999999999998 899999999999999 99999999888774 69999999999999999999996
Q ss_pred CCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 002535 493 KIS-PFARNIASIGRRSVKNLMALETIEGYAMLL 525 (911)
Q Consensus 493 ~~p-~~~~~mg~~ar~~ae~Fs~e~ia~~y~~Ly 525 (911)
+ +.++++.++.++.+.+|++...++.|.+-+
T Consensus 423 --~~~er~~r~~~~~~~v~~~~~~~W~~~~l~~l 454 (456)
T TIGR02400 423 --PLEEREERHRAMMDKLRKNDVQRWREDFLSDL 454 (456)
T ss_pred --CHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHh
Confidence 4 566678888899998899999999887644
No 76
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.83 E-value=6.4e-19 Score=201.41 Aligned_cols=336 Identities=10% Similarity=0.085 Sum_probs=213.4
Q ss_pred CCCEEEEEeCCCCCChHHHHHHHHHHHHHHCCC---eEEEEEeCC--Cc-chhhh--------h----hcCceEEE----
Q 002535 143 RKPQLALVFPDLLIDPQQLQMVTIAIALREIGY---AIQVYSLED--GR-AHEVW--------R----NIGVPVAI---- 200 (911)
Q Consensus 143 rkprIalI~~~L~~GGae~~v~~LAk~L~~~Gy---eV~V~t~~~--g~-~~~~~--------~----~~gi~v~~---- 200 (911)
+.+||+++..+. .+|--.....+.++|.++|. +|.++..-. ++ ..... + -.+.-++.
T Consensus 4 ~~~~vlil~~~~-G~GH~~aA~al~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~Y~~~~~~~p~~y~~~y~~~~~~ 82 (391)
T PRK13608 4 QNKKILIITGSF-GNGHMQVTQSIVNQLNDMNLDHLSVIEHDLFMEAHPILTSICKKWYINSFKYFRNMYKGFYYSRPDK 82 (391)
T ss_pred CCceEEEEECCC-CchHHHHHHHHHHHHHhhCCCCceEEEeehHHhcCchHHHHHHHHHHHHHHHhHHHHHHHHHcCchh
Confidence 346888888665 56777788889999988764 455543321 11 11100 0 00000000
Q ss_pred e-------ccchhHHHhhhhcCccEEEEcCcchhHHHHHHhhCCCCCCCEEEEEcCchhhHHHHHHHhhcchhhHhhHHH
Q 002535 201 L-------QTGREKASFVNWLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKK 273 (911)
Q Consensus 201 l-------~~~~~l~~lI~~~kpDIIhvhs~~~~~~ia~L~~~~~~giPvV~tiH~~~L~~~l~k~~~~~~d~lIs~~~~ 273 (911)
+ .....+.++++..+||+||++++.. .+..+......++|++...++.... ..+..
T Consensus 83 ~~~~~~~~~~~~~l~~~l~~~kPDvVi~~~p~~--~~~~l~~~~~~~iP~~~v~td~~~~---~~w~~------------ 145 (391)
T PRK13608 83 LDKCFYKYYGLNKLINLLIKEKPDLILLTFPTP--VMSVLTEQFNINIPVATVMTDYRLH---KNWIT------------ 145 (391)
T ss_pred hHHHHHHHHHHHHHHHHHHHhCcCEEEECCcHH--HHHHHHHhcCCCCCEEEEeCCCCcc---ccccc------------
Confidence 0 0113455667889999999987765 3444433334578986444332111 11222
Q ss_pred HHhhcceEEecCCcc--ccccccCCCCCEEEeCCCCCCcccccccCchhhHHHHHhhCCCCCCeEEEEEEeccccccccc
Q 002535 274 VFNRATVVVFPDYVL--PMMYSAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWL 351 (911)
Q Consensus 274 ~~~~a~~vvfpn~~l--~ii~~~id~~ki~VIpg~gVD~~~f~~~~~~~k~~lR~~lgi~~d~~vIL~VGsrl~~~KGiK 351 (911)
..++.+++++... .+...+++.+++.++. +|++.. |. ....+...+.++++++++++++++|+++... |
T Consensus 146 --~~~d~~~v~s~~~~~~l~~~gi~~~ki~v~G-iPv~~~-f~--~~~~~~~~~~~~~l~~~~~~ilv~~G~lg~~---k 216 (391)
T PRK13608 146 --PYSTRYYVATKETKQDFIDVGIDPSTVKVTG-IPIDNK-FE--TPIDQKQWLIDNNLDPDKQTILMSAGAFGVS---K 216 (391)
T ss_pred --CCCCEEEECCHHHHHHHHHcCCCHHHEEEEC-eecChH-hc--ccccHHHHHHHcCCCCCCCEEEEECCCcccc---h
Confidence 2334344443331 1223456667777764 566642 21 1122456677889887776666655466644 8
Q ss_pred cHHHHHHHHHHhhhhcccCCCCCCCEEEEEEeCCCCCchHHHHHHHHHHcCCCCccEEEccccccHHHHHHHcCeeEEcc
Q 002535 352 EHALILRALLPLFSEVSVENESNSPIKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNTADVVIYGS 431 (911)
Q Consensus 352 g~dlLLeAl~~L~~~~p~~~~~~~~vkLvIVGG~~~e~Y~~~Le~la~~lgL~~~~V~flG~v~dV~~~L~~ADVfVlPS 431 (911)
+++.+++++. +..++ +++++++|... ...+++.+..+..+ +|.++|+++++.++|+.||++|..+
T Consensus 217 ~~~~li~~~~---~~~~~-------~~~vvv~G~~~----~l~~~l~~~~~~~~-~v~~~G~~~~~~~~~~~aDl~I~k~ 281 (391)
T PRK13608 217 GFDTMITDIL---AKSAN-------AQVVMICGKSK----ELKRSLTAKFKSNE-NVLILGYTKHMNEWMASSQLMITKP 281 (391)
T ss_pred hHHHHHHHHH---hcCCC-------ceEEEEcCCCH----HHHHHHHHHhccCC-CeEEEeccchHHHHHHhhhEEEeCC
Confidence 8988888853 22344 78877775432 22234444444444 7999999999999999999999632
Q ss_pred cCCcCCccHHHHHHHHcCCCEEecCC-Cc----cccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Q 002535 432 FLEEQTFPEILVKALCFRKPIIAPDL-SN----IRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGR 506 (911)
Q Consensus 432 ~~E~qGFplvLLEAMA~G~PVIaTd~-gG----i~EiV~dg~nGlLv~~~D~eaLAeaI~~LLsd~~~p~~~~~mg~~ar 506 (911)
.|+++.|||++|+|+|+++. +| ...++.+...|++ .+|+++++++|.++++| ++.+++|+++++
T Consensus 282 ------gg~tl~EA~a~G~PvI~~~~~pgqe~~N~~~~~~~G~g~~--~~~~~~l~~~i~~ll~~---~~~~~~m~~~~~ 350 (391)
T PRK13608 282 ------GGITISEGLARCIPMIFLNPAPGQELENALYFEEKGFGKI--ADTPEEAIKIVASLTNG---NEQLTNMISTME 350 (391)
T ss_pred ------chHHHHHHHHhCCCEEECCCCCCcchhHHHHHHhCCcEEE--eCCHHHHHHHHHHHhcC---HHHHHHHHHHHH
Confidence 48899999999999999863 33 1223445445655 45999999999999999 999999999999
Q ss_pred HHHHhcCHHHHHHHHHHHHHHHhcC
Q 002535 507 RSVKNLMALETIEGYAMLLENVLKL 531 (911)
Q Consensus 507 ~~ae~Fs~e~ia~~y~~Lye~vL~~ 531 (911)
+.++.++++++++.+.++++.+.+.
T Consensus 351 ~~~~~~s~~~i~~~l~~l~~~~~~~ 375 (391)
T PRK13608 351 QDKIKYATQTICRDLLDLIGHSSQP 375 (391)
T ss_pred HhcCCCCHHHHHHHHHHHhhhhhhh
Confidence 9988899999999999998876543
No 77
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.83 E-value=8.2e-19 Score=179.87 Aligned_cols=222 Identities=20% Similarity=0.187 Sum_probs=160.2
Q ss_pred EEEeCCCC--CChHHHHHHHHHHHHHHCCCeEEEEEeCCCcchhhhhhcCceEEEeccchhHHHhhhhcCccEEEEcCcc
Q 002535 148 ALVFPDLL--IDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVNSLE 225 (911)
Q Consensus 148 alI~~~L~--~GGae~~v~~LAk~L~~~GyeV~V~t~~~g~~~~~~~~~gi~v~~l~~~~~l~~lI~~~kpDIIhvhs~~ 225 (911)
+++..... .||.+.....+++.|.++||+|+++. .....+...++..+||+||+|+..
T Consensus 2 ~~i~~~~~~~~~G~~~~~~~l~~~L~~~g~~v~v~~--------------------~~~~~~~~~~~~~~~D~i~~~~~~ 61 (229)
T cd01635 2 LLVSTPLLPGGGGVELVLLDLAKALARRGHEVEVVA--------------------LLLLLLLRILRGFKPDVVHAHGYY 61 (229)
T ss_pred eeeccccCCCCCCchhHHHHHHHHHHHcCCeEEEEE--------------------echHHHHHHHhhcCCCEEEEcCCC
Confidence 34444443 78999999999999999999999998 122333455667799999999988
Q ss_pred hhHHHHHHhhCCCCCCCEEEEEcCchhhHHHHHHHhhcchhhHhhHHHHHhhcceEEecCCccccccccCCCCCEEEeCC
Q 002535 226 AKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRATVVVFPDYVLPMMYSAFDAGNYYVIPG 305 (911)
Q Consensus 226 ~~~~ia~L~~~~~~giPvV~tiH~~~L~~~l~k~~~~~~d~lIs~~~~~~~~a~~vvfpn~~l~ii~~~id~~ki~VIpg 305 (911)
......... .+..++|++++.|+.......... ... .......+
T Consensus 62 ~~~~~~~~~-~~~~~~~~i~~~h~~~~~~~~~~~-----~~~---~~~~~~~~--------------------------- 105 (229)
T cd01635 62 PAPLALLLA-ARLLGIPLVLTVHGVNRSLLEGVP-----LSL---LALSIGLA--------------------------- 105 (229)
T ss_pred cHHHHHHHH-HhhCCCCEEEEEcCccHhhcccCc-----HHH---HHHHHhhc---------------------------
Confidence 843333122 236689999999963322111000 000 00000000
Q ss_pred CCCCcccccccCchhhHHHHHhhCCCCCCeEEEEEEeccccccccccHHHHHHHHHHhhhhcccCCCCCCCEEEEEEe-C
Q 002535 306 SPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILS-G 384 (911)
Q Consensus 306 ~gVD~~~f~~~~~~~k~~lR~~lgi~~d~~vIL~VGsrl~~~KGiKg~dlLLeAl~~L~~~~p~~~~~~~~vkLvIVG-G 384 (911)
...++| +..+. ||++.+++|+..+.++.|+ ++++++| +
T Consensus 106 ------------------------------~~~~~g-~~~~~---k~~~~~~~a~~~l~~~~~~-------~~~~i~G~~ 144 (229)
T cd01635 106 ------------------------------DKVFVG-RLAPE---KGLDDLIEAFALLKERGPD-------LKLVIAGDG 144 (229)
T ss_pred ------------------------------ceEEEE-eeccc---CCHHHHHHHHHHHHHhCCC-------eEEEEEeCC
Confidence 011888 45554 9999999999999988777 9999999 5
Q ss_pred CCCCchHHHHHHHHHHcCCCCccEEEcccc---ccHHHHHHHcCeeEEcccCCcCCccHHHHHHHHcCCCEEecCCCccc
Q 002535 385 DSTSNYSVVIEAIAHNLHYPLGVVKHMAAE---GDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSNIR 461 (911)
Q Consensus 385 ~~~e~Y~~~Le~la~~lgL~~~~V~flG~v---~dV~~~L~~ADVfVlPS~~E~qGFplvLLEAMA~G~PVIaTd~gGi~ 461 (911)
+.. ...+..+.+.+..+ +|.++|+. +++..+++.||++++||..| ++|++++|||++|+|||+|+.++..
T Consensus 145 ~~~----~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~di~l~~~~~e--~~~~~~~Eam~~g~pvi~s~~~~~~ 217 (229)
T cd01635 145 PER----EYLEELLAALLLLD-RVIFLGGLDPEELLALLLAAADVFVLPSLRE--GFGLVVLEAMACGLPVIATDVGGPP 217 (229)
T ss_pred CCh----HHHHHHHHhcCCcc-cEEEeCCCCcHHHHHHHhhcCCEEEeccccc--CcChHHHHHHhCCCCEEEcCCCCcc
Confidence 443 44444466667776 89999983 55666666799999999998 7999999999999999999999999
Q ss_pred cccccCccEEEE
Q 002535 462 KYVDDRVNGYLF 473 (911)
Q Consensus 462 EiV~dg~nGlLv 473 (911)
|++.++.+|+++
T Consensus 218 e~i~~~~~g~~~ 229 (229)
T cd01635 218 EIVEDGLTGLLV 229 (229)
T ss_pred eEEECCCceEEC
Confidence 999999999874
No 78
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.82 E-value=6.2e-19 Score=200.72 Aligned_cols=271 Identities=16% Similarity=0.132 Sum_probs=177.0
Q ss_pred HHHhhhhcCccEEEEcCcchhH----HHHHHhhCCCCCCCEEEEEcCchhhHHHHHHHhhcchhhHhhHHHHHhhcceEE
Q 002535 207 KASFVNWLNYDGILVNSLEAKV----VISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRATVVV 282 (911)
Q Consensus 207 l~~lI~~~kpDIIhvhs~~~~~----~ia~L~~~~~~giPvV~tiH~~~L~~~l~k~~~~~~d~lIs~~~~~~~~a~~vv 282 (911)
+.++++..+||+||++++.... .+..+......++|++.++++.... ...+..+.+ +.++
T Consensus 92 l~~~i~~~~pDvIi~thp~~~~~~~~~l~~~~~~~~~~~p~~~~~tD~~~~--~~~w~~~~~--------------d~~~ 155 (382)
T PLN02605 92 VAKGLMKYKPDIIVSVHPLMQHVPLRVLRWQGKELGKKIPFTTVVTDLGTC--HPTWFHKGV--------------TRCF 155 (382)
T ss_pred HHHHHHhcCcCEEEEeCcCcccCHHHHHHHHhhccCCCCCEEEEECCCCCc--CcccccCCC--------------CEEE
Confidence 4456777899999998766321 1222211123578888766642101 112222333 3333
Q ss_pred ecCCcc--ccccccCCCCCEEEeCCCCCCcccccccCchhhHHHHHhhCCCCCCeEEEEEEeccccccccccHHHHHHHH
Q 002535 283 FPDYVL--PMMYSAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRAL 360 (911)
Q Consensus 283 fpn~~l--~ii~~~id~~ki~VIpg~gVD~~~f~~~~~~~k~~lR~~lgi~~d~~vIL~VGsrl~~~KGiKg~dlLLeAl 360 (911)
.++... .+...+++.+++.+++ +|++...... ...+..+|++++++++.++|+++|+.... |++..+++++
T Consensus 156 ~~s~~~~~~l~~~g~~~~ki~v~g-~~v~~~f~~~--~~~~~~~r~~~gl~~~~~~il~~Gg~~g~----~~~~~li~~l 228 (382)
T PLN02605 156 CPSEEVAKRALKRGLEPSQIRVYG-LPIRPSFARA--VRPKDELRRELGMDEDLPAVLLMGGGEGM----GPLEETARAL 228 (382)
T ss_pred ECCHHHHHHHHHcCCCHHHEEEEC-cccCHhhccC--CCCHHHHHHHcCCCCCCcEEEEECCCccc----ccHHHHHHHH
Confidence 333221 1223456677888875 5787632211 12356789999999999999999964444 8898889998
Q ss_pred HHhhh----hcccCCCCCCCEEE-EEEeCCCCCchHHHHHHHHHHcCCCCccEEEccccccHHHHHHHcCeeEEcccCCc
Q 002535 361 LPLFS----EVSVENESNSPIKV-MILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNTADVVIYGSFLEE 435 (911)
Q Consensus 361 ~~L~~----~~p~~~~~~~~vkL-vIVGG~~~e~Y~~~Le~la~~lgL~~~~V~flG~v~dV~~~L~~ADVfVlPS~~E~ 435 (911)
..+.. ..++ .++ +++|.+ . .+.+.+++. .... +|+++|+++++.++|++||++|.++
T Consensus 229 ~~~~~~~~~~~~~-------~~~~vi~G~~-~-~~~~~L~~~----~~~~-~v~~~G~~~~~~~l~~aaDv~V~~~---- 290 (382)
T PLN02605 229 GDSLYDKNLGKPI-------GQVVVICGRN-K-KLQSKLESR----DWKI-PVKVRGFVTNMEEWMGACDCIITKA---- 290 (382)
T ss_pred HHhhccccccCCC-------ceEEEEECCC-H-HHHHHHHhh----cccC-CeEEEeccccHHHHHHhCCEEEECC----
Confidence 76531 1233 554 455522 1 112333332 2233 6999999999999999999999865
Q ss_pred CCccHHHHHHHHcCCCEEecCC------CccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH
Q 002535 436 QTFPEILVKALCFRKPIIAPDL------SNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSV 509 (911)
Q Consensus 436 qGFplvLLEAMA~G~PVIaTd~------gGi~EiV~dg~nGlLv~~~D~eaLAeaI~~LLsd~~~p~~~~~mg~~ar~~a 509 (911)
.|++++|||+||+|||+++. ++. +.+.++..|+++ +|+++++++|.++++++ ++.+++|++++++.+
T Consensus 291 --g~~ti~EAma~g~PvI~~~~~pgqe~gn~-~~i~~~g~g~~~--~~~~~la~~i~~ll~~~--~~~~~~m~~~~~~~~ 363 (382)
T PLN02605 291 --GPGTIAEALIRGLPIILNGYIPGQEEGNV-PYVVDNGFGAFS--ESPKEIARIVAEWFGDK--SDELEAMSENALKLA 363 (382)
T ss_pred --CcchHHHHHHcCCCEEEecCCCccchhhH-HHHHhCCceeec--CCHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhc
Confidence 37899999999999999984 444 334444457654 79999999999999751 567778999999998
Q ss_pred HhcCHHHHHHHHHHHH
Q 002535 510 KNLMALETIEGYAMLL 525 (911)
Q Consensus 510 e~Fs~e~ia~~y~~Ly 525 (911)
...+.+.+++...++.
T Consensus 364 ~~~a~~~i~~~l~~~~ 379 (382)
T PLN02605 364 RPEAVFDIVHDLHELV 379 (382)
T ss_pred CCchHHHHHHHHHHHh
Confidence 8888888887766543
No 79
>COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism]
Probab=99.82 E-value=9.4e-18 Score=194.30 Aligned_cols=357 Identities=15% Similarity=0.167 Sum_probs=234.4
Q ss_pred CCCChHHHHHHHHHHHHHHCCCeEEEEEeCCCcchhhhhh---------------------------cCceEEEeccc--
Q 002535 154 LLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRN---------------------------IGVPVAILQTG-- 204 (911)
Q Consensus 154 L~~GGae~~v~~LAk~L~~~GyeV~V~t~~~g~~~~~~~~---------------------------~gi~v~~l~~~-- 204 (911)
...||..-.+..+.++|++.|++|.|+.+..+.....+.. .+++...+...
T Consensus 14 vK~GGLaDv~~alpk~L~~~g~~v~v~lP~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~lid~~~~ 93 (487)
T COG0297 14 VKTGGLADVVGALPKALAKRGVDVRVLLPSYPKVQKEWRDLLKVVGKFGVLKGGRAQLFIVKEYGKDGGVDLYLIDNPAL 93 (487)
T ss_pred cccCcHHHHHHHhHHHHHhcCCeEEEEcCCchhhhhhhccccceeeEeeeeecccceEEEEEeecccCCCcEEEecChhh
Confidence 3579999999999999999999999998765322211111 00222222100
Q ss_pred --h----------hHHH----------hhhh----cCccEEEEcCcchhHHHHHHhhCC---CCCCCEEEEEcCchhh--
Q 002535 205 --R----------EKAS----------FVNW----LNYDGILVNSLEAKVVISNIMQEP---FKSLPLVWTIHEGTLA-- 253 (911)
Q Consensus 205 --~----------~l~~----------lI~~----~kpDIIhvhs~~~~~~ia~L~~~~---~~giPvV~tiH~~~L~-- 253 (911)
+ ...+ .+.. ..|||||+|++... .+..++... ...+|.|+|+|+-...
T Consensus 94 f~r~~~~~~~~~d~~~Rf~~F~~a~~~~~~~~~~~~~pDIvH~hDWqt~-L~~~~lk~~~~~~~~i~tVfTIHNl~~qG~ 172 (487)
T COG0297 94 FKRPDSTLYGYYDNAERFAFFSLAAAELAPLGLISWLPDIVHAHDWQTG-LLPAYLKQRYRSGYIIPTVFTIHNLAYQGL 172 (487)
T ss_pred cCccccccCCCCcHHHHHHHHHHHHHHHhhhcCCCCCCCEEEeecHHHH-HHHHHHhhcccccccCCeEEEEeeceeecc
Confidence 0 0000 0111 36999999999994 666666443 5578999999971110
Q ss_pred --HHH--------HHHHhhc--chhhHhhHHHHHhhcceEEecCCc--cccccccC----------CCCCEEEeCCCCCC
Q 002535 254 --TRA--------RNYASSG--QLELLNDWKKVFNRATVVVFPDYV--LPMMYSAF----------DAGNYYVIPGSPAK 309 (911)
Q Consensus 254 --~~l--------~k~~~~~--~d~lIs~~~~~~~~a~~vvfpn~~--l~ii~~~i----------d~~ki~VIpg~gVD 309 (911)
... ..+..-. ....++..+.....++.+...+.. ..+..+.. ...++.-|-| |+|
T Consensus 173 ~~~~~~~~lgLp~~~~~~~~l~~~~~~~~lK~gi~~ad~vttVSptYa~Ei~t~~~g~gl~g~l~~~~~~l~GI~N-giD 251 (487)
T COG0297 173 FRLQYLEELGLPFEAYASFGLEFYGQISFLKGGLYYADAVTTVSPTYAGEIYTPEYGEGLEGLLSWRSGKLSGILN-GID 251 (487)
T ss_pred cchhhHHHhcCCHHHhhhceeeecCcchhhhhhheeccEEEEECHHHHHhhccccccccchhhhhhccccEEEEEe-eEE
Confidence 000 1111000 001122334444445544333222 11111111 0133444442 444
Q ss_pred cccccc---------cC------chh-hHHHHHhhCCCC--CCeEEEEEEeccccccccccHHHHHHHHHHhhhhcccCC
Q 002535 310 AWEADT---------NM------DLY-NDTVRVKMGFKP--DDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVEN 371 (911)
Q Consensus 310 ~~~f~~---------~~------~~~-k~~lR~~lgi~~--d~~vIL~VGsrl~~~KGiKg~dlLLeAl~~L~~~~p~~~ 371 (911)
....++ ++ +.. +..+++.+|++. +.+++.++| |+..+ ||++++++|+..+.++.
T Consensus 252 ~~~wnp~~d~~~~~~y~~~~~~~k~~nk~~L~~~~gL~~~~~~pl~~~vs-Rl~~Q---KG~dl~~~~i~~~l~~~---- 323 (487)
T COG0297 252 YDLWNPETDPYIAANYSAEVLPAKAENKVALQERLGLDVDLPGPLFGFVS-RLTAQ---KGLDLLLEAIDELLEQG---- 323 (487)
T ss_pred ecccCcccccchhccCCccchhhhHHHHHHHHHHhCCCCCCCCcEEEEee-ccccc---cchhHHHHHHHHHHHhC----
Confidence 322111 11 112 567788889883 558999999 55555 99999999999999875
Q ss_pred CCCCCEEEEEEe-CCCCCchHHHHHHHHHHcCCCCccEEEcccccc-HHHHHHHcCeeEEcccCCcCCccHHHHHHHHcC
Q 002535 372 ESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGD-VDSVLNTADVVIYGSFLEEQTFPEILVKALCFR 449 (911)
Q Consensus 372 ~~~~~vkLvIVG-G~~~e~Y~~~Le~la~~lgL~~~~V~flG~v~d-V~~~L~~ADVfVlPS~~E~qGFplvLLEAMA~G 449 (911)
++++++| | +..+...+..+++++.. . .....|+.+. ...+++.||++++||++| ++|++-++||..|
T Consensus 324 -----~~~vilG~g--d~~le~~~~~la~~~~~-~-~~~~i~~~~~la~~i~agaD~~lmPSrfE--PcGL~ql~amryG 392 (487)
T COG0297 324 -----WQLVLLGTG--DPELEEALRALASRHPG-R-VLVVIGYDEPLAHLIYAGADVILMPSRFE--PCGLTQLYAMRYG 392 (487)
T ss_pred -----ceEEEEecC--cHHHHHHHHHHHHhcCc-e-EEEEeeecHHHHHHHHhcCCEEEeCCcCc--CCcHHHHHHHHcC
Confidence 7999999 7 45677888888886544 2 3455566644 567999999999999999 5999999999999
Q ss_pred CCEEecCCCcccccccc--------CccEEEEcCCCHHHHHHHHHHHHHcCCCcHH-HHHHHHHHHHHHHhcCHHHHHHH
Q 002535 450 KPIIAPDLSNIRKYVDD--------RVNGYLFPKENIKALTHIILQVITNGKISPF-ARNIASIGRRSVKNLMALETIEG 520 (911)
Q Consensus 450 ~PVIaTd~gGi~EiV~d--------g~nGlLv~~~D~eaLAeaI~~LLsd~~~p~~-~~~mg~~ar~~ae~Fs~e~ia~~ 520 (911)
+++|+..+||.++.|.+ ..+|+++.+.|+++++.+|.+.+.-.+.++. .+.+..++.. .+|+|+..++.
T Consensus 393 tvpIv~~tGGLadTV~~~~~~~~~~~gtGf~f~~~~~~~l~~al~rA~~~y~~~~~~w~~~~~~~m~--~d~sw~~sa~~ 470 (487)
T COG0297 393 TLPIVRETGGLADTVVDRNEWLIQGVGTGFLFLQTNPDHLANALRRALVLYRAPPLLWRKVQPNAMG--ADFSWDLSAKE 470 (487)
T ss_pred CcceEcccCCccceecCccchhccCceeEEEEecCCHHHHHHHHHHHHHHhhCCHHHHHHHHHhhcc--cccCchhHHHH
Confidence 99999999999998875 4789999999999999999987753222555 6666555544 67999999999
Q ss_pred HHHHHHHHhcCCC
Q 002535 521 YAMLLENVLKLPS 533 (911)
Q Consensus 521 y~~Lye~vL~~p~ 533 (911)
|.++|+.+++.+-
T Consensus 471 y~~lY~~~~~~~~ 483 (487)
T COG0297 471 YVELYKPLLSKPF 483 (487)
T ss_pred HHHHHHHHhcccc
Confidence 9999999987654
No 80
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=99.78 E-value=6.2e-18 Score=208.04 Aligned_cols=297 Identities=10% Similarity=0.072 Sum_probs=193.4
Q ss_pred CccEEEEcCcchhHHHHHHhhCCCCCCCEEEEEcCchh----hHHHH---HHHh--hcchhhH---hhHHHHHh-hcceE
Q 002535 215 NYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTL----ATRAR---NYAS--SGQLELL---NDWKKVFN-RATVV 281 (911)
Q Consensus 215 kpDIIhvhs~~~~~~ia~L~~~~~~giPvV~tiH~~~L----~~~l~---k~~~--~~~d~lI---s~~~~~~~-~a~~v 281 (911)
.-|+|.+|..... .+..++.+.....++.+..|..-. +..+. .++. ..+|.+. ..+...|. .+..+
T Consensus 147 ~~d~vWvhDYhL~-llp~~lR~~~~~~~igfFlHiPFPs~e~fr~lp~r~~il~gll~aDligF~t~~y~r~Fl~~~~r~ 225 (797)
T PLN03063 147 EGDVVWCHDYHLM-FLPQYLKEYNNKMKVGWFLHTPFPSSEIYKTLPSRSELLRAVLTADLIGFHTYDFARHFLSACTRI 225 (797)
T ss_pred CCCEEEEecchhh-hHHHHHHHhCCCCcEEEEecCCCCCHHHHhhCCCHHHHHHHHhcCCEEEeCCHHHHHHHHHHHHHH
Confidence 3489999998884 677777666788899999997211 11110 0000 0011000 01111111 11111
Q ss_pred EecCCc-cccccccCCCCCEEEeCCCCCCcccccccCch--hh---HHHHHhhCCCCCCeEEEEEEeccccccccccHHH
Q 002535 282 VFPDYV-LPMMYSAFDAGNYYVIPGSPAKAWEADTNMDL--YN---DTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHAL 355 (911)
Q Consensus 282 vfpn~~-l~ii~~~id~~ki~VIpg~gVD~~~f~~~~~~--~k---~~lR~~lgi~~d~~vIL~VGsrl~~~KGiKg~dl 355 (911)
.-.+.. ..+.+. -...++.++| +|||+..|...... .+ ..+++.++ ++++|++|| ++.+. ||+..
T Consensus 226 l~~~~~~~~i~~~-gr~~~I~viP-~GID~~~f~~~~~~~~~~~~~~~lr~~~~---~~~lIl~Vg-RLd~~---KGi~~ 296 (797)
T PLN03063 226 LGVEGTHEGVVDQ-GKVTRVAVFP-IGIDPERFINTCELPEVKQHMKELKRFFA---GRKVILGVD-RLDMI---KGIPQ 296 (797)
T ss_pred hCccccCCceEEC-CeEEEEEEEe-cccCHHHHHHHhcChhHHHHHHHHHHhcC---CCeEEEEec-ccccc---cCHHH
Confidence 111110 111111 1124577888 59998665543221 11 23344433 567999999 66666 99999
Q ss_pred HHHHHHHhhhhcccCCCCCCCEEEEEEeCCCCC--chHHHHHHHHHHcC--CCC--c-----cEEEcc-cc--ccHHHHH
Q 002535 356 ILRALLPLFSEVSVENESNSPIKVMILSGDSTS--NYSVVIEAIAHNLH--YPL--G-----VVKHMA-AE--GDVDSVL 421 (911)
Q Consensus 356 LLeAl~~L~~~~p~~~~~~~~vkLvIVGG~~~e--~Y~~~Le~la~~lg--L~~--~-----~V~flG-~v--~dV~~~L 421 (911)
+++|+..+.+++|+ ...++.|+.++++... .....+++.++++. +.. + .|.+++ .+ +++..+|
T Consensus 297 lL~Afe~lL~~~P~---~~~kvvLvqia~psr~~~~~y~~l~~~v~~l~g~In~~~g~~~~~pv~~l~~~v~~~el~aly 373 (797)
T PLN03063 297 KYLAFEKFLEENPE---WRDKVMLVQIAVPTRNDVPEYQKLKSQVHELVGRINGRFGSVSSVPIHHLDCSVDFNYLCALY 373 (797)
T ss_pred HHHHHHHHHHhCcc---ccCcEEEEEEecCCCCchHHHHHHHHHHHHHHHHhhcccccCCCceeEEecCCCCHHHHHHHH
Confidence 99999999988886 1112456655544321 12234555555442 221 0 133333 33 7899999
Q ss_pred HHcCeeEEcccCCcCCccHHHHHHHHcCCC----EEecCCCccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHH
Q 002535 422 NTADVVIYGSFLEEQTFPEILVKALCFRKP----IIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPF 497 (911)
Q Consensus 422 ~~ADVfVlPS~~E~qGFplvLLEAMA~G~P----VIaTd~gGi~EiV~dg~nGlLv~~~D~eaLAeaI~~LLsd~~~p~~ 497 (911)
+.||++|+||..| ||+++++||||||+| +|+|+.+|..+.+ +.+|++++|.|++++|++|.+++++. +++
T Consensus 374 ~~ADvfvvtSlrE--GmnLv~lEamA~g~p~~gvlVlSe~~G~~~~l--~~~allVnP~D~~~lA~AI~~aL~m~--~~e 447 (797)
T PLN03063 374 AITDVMLVTSLRD--GMNLVSYEFVACQKAKKGVLVLSEFAGAGQSL--GAGALLVNPWNITEVSSAIKEALNMS--DEE 447 (797)
T ss_pred HhCCEEEeCcccc--ccCcchhhHheeecCCCCCEEeeCCcCchhhh--cCCeEEECCCCHHHHHHHHHHHHhCC--HHH
Confidence 9999999999999 899999999999999 9999999999976 44799999999999999999999940 566
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhc
Q 002535 498 ARNIASIGRRSVKNLMALETIEGYAMLLENVLK 530 (911)
Q Consensus 498 ~~~mg~~ar~~ae~Fs~e~ia~~y~~Lye~vL~ 530 (911)
+++..++.++.+.++++...++.+.+.++++..
T Consensus 448 r~~r~~~~~~~v~~~~~~~Wa~~fl~~l~~~~~ 480 (797)
T PLN03063 448 RETRHRHNFQYVKTHSAQKWADDFMSELNDIIV 480 (797)
T ss_pred HHHHHHHHHHhhhhCCHHHHHHHHHHHHHHHhh
Confidence 777788899999999999999999998887754
No 81
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=99.76 E-value=2.1e-16 Score=179.38 Aligned_cols=333 Identities=16% Similarity=0.055 Sum_probs=195.0
Q ss_pred EEEEEeCCCCCChHHHHHHHHHHHHHHCCCeEEEEEeCCC-cchhhhhhcCceEE-Ee---------------cc-----
Q 002535 146 QLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDG-RAHEVWRNIGVPVA-IL---------------QT----- 203 (911)
Q Consensus 146 rIalI~~~L~~GGae~~v~~LAk~L~~~GyeV~V~t~~~g-~~~~~~~~~gi~v~-~l---------------~~----- 203 (911)
+..++++...+++....--.++..|.+.||.|..+....- ............+. .+ +.
T Consensus 5 ~~~~~~~~~~w~~~~~~~qhl~~~~a~~~~~vl~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (373)
T cd04950 5 PDILVFSADDWDFLWQRPQHLAARLAERGNRVLYVEPPGLSRTPQPRGRDWVRVVLRLRAALRRPRRLDPLIPARRRRLL 84 (373)
T ss_pred CeEEEecccCcCCCCCCHHHHHHHHHhCCCeEEEEeCCCccCCCCCCCcccEEeeecccccccCccccCccccchhhhHH
Confidence 3445555667777777777888888899999998876431 10000000000010 00 00
Q ss_pred chhHHHhhh------hcCccEEEEcCcchhHHHHHHhhCCCCCCCEEEEEcCchhhHHHHHHHhhcchhhHhhHHHHHhh
Q 002535 204 GREKASFVN------WLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNR 277 (911)
Q Consensus 204 ~~~l~~lI~------~~kpDIIhvhs~~~~~~ia~L~~~~~~giPvV~tiH~~~L~~~l~k~~~~~~d~lIs~~~~~~~~ 277 (911)
...+...+. ..+..+++.+.+... .+... ..+.++|+.+++...... . ............++.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~i~~~~~P~~~-~~~~~----~~~~~~Vyd~~D~~~~~~-----~-~~~~~~~~e~~~~~~ 153 (373)
T cd04950 85 RLLLNALLFWAQLELGFGRPILWYYTPYTL-PVAAL----LQASLVVYDCVDDLSAFP-----G-GPPELLEAERRLLKR 153 (373)
T ss_pred HHHHHHHHHHHHHhcCCCCcEEEEeCccHH-HHHhh----cCCCeEEEEcccchhccC-----C-CCHHHHHHHHHHHHh
Confidence 011111221 234556666666653 22222 456789999886321110 0 001111345556677
Q ss_pred cceEEecCCccccccccCCCCCEEEeCCCCCCcccccccCchhhHHHHHhhCCCCCCeEEEEEEeccccccccccHHHHH
Q 002535 278 ATVVVFPDYVLPMMYSAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALIL 357 (911)
Q Consensus 278 a~~vvfpn~~l~ii~~~id~~ki~VIpg~gVD~~~f~~~~~~~k~~lR~~lgi~~d~~vIL~VGsrl~~~KGiKg~dlLL 357 (911)
++.++..+..+........ .++.+||| |+|...|.+....... .+. ....++++++|+|+... . ++++++.
T Consensus 154 ad~vi~~S~~l~~~~~~~~-~~i~~i~n-gvd~~~f~~~~~~~~~-~~~--~~~~~~~~i~y~G~l~~-~---~d~~ll~ 224 (373)
T cd04950 154 ADLVFTTSPSLYEAKRRLN-PNVVLVPN-GVDYEHFAAARDPPPP-PAD--LAALPRPVIGYYGAIAE-W---LDLELLE 224 (373)
T ss_pred CCEEEECCHHHHHHHhhCC-CCEEEccc-ccCHHHhhcccccCCC-hhH--HhcCCCCEEEEEecccc-c---cCHHHHH
Confidence 7777666555332222222 68899994 9998665443221110 111 12245679999995444 3 6765554
Q ss_pred HHHHHhhhhcccCCCCCCCEEEEEEe-CCCCCchHHHHHHHHHHcCCCCccEEEcccc--ccHHHHHHHcCeeEEcccCC
Q 002535 358 RALLPLFSEVSVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAAE--GDVDSVLNTADVVIYGSFLE 434 (911)
Q Consensus 358 eAl~~L~~~~p~~~~~~~~vkLvIVG-G~~~e~Y~~~Le~la~~lgL~~~~V~flG~v--~dV~~~L~~ADVfVlPS~~E 434 (911)
+++ +..|+ ++|+++| |+... . .......+ +|+++|++ +++..+|+.+|++++|+..+
T Consensus 225 ~la----~~~p~-------~~~vliG~~~~~~----~---~~~~~~~~--nV~~~G~~~~~~l~~~l~~~Dv~l~P~~~~ 284 (373)
T cd04950 225 ALA----KARPD-------WSFVLIGPVDVSI----D---PSALLRLP--NVHYLGPKPYKELPAYLAGFDVAILPFRLN 284 (373)
T ss_pred HHH----HHCCC-------CEEEEECCCcCcc----C---hhHhccCC--CEEEeCCCCHHHHHHHHHhCCEEecCCccc
Confidence 433 34456 9999999 62221 1 11112233 69999987 89999999999999998532
Q ss_pred ---cCCccHHHHHHHHcCCCEEecCCCccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHh
Q 002535 435 ---EQTFPEILVKALCFRKPIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSVKN 511 (911)
Q Consensus 435 ---~qGFplvLLEAMA~G~PVIaTd~gGi~EiV~dg~nGlLv~~~D~eaLAeaI~~LLsd~~~p~~~~~mg~~ar~~ae~ 511 (911)
..++|++++||||||+|||+|+.+.+ +..+. |.++.++|+++++++|.+++.+ +...... .+++.+++
T Consensus 285 ~~~~~~~P~Kl~EylA~G~PVVat~~~~~---~~~~~-~~~~~~~d~~~~~~ai~~~l~~---~~~~~~~--~~~~~~~~ 355 (373)
T cd04950 285 ELTRATSPLKLFEYLAAGKPVVATPLPEV---RRYED-EVVLIADDPEEFVAAIEKALLE---DGPARER--RRLRLAAQ 355 (373)
T ss_pred hhhhcCCcchHHHHhccCCCEEecCcHHH---HhhcC-cEEEeCCCHHHHHHHHHHHHhc---CCchHHH--HHHHHHHH
Confidence 12689999999999999999986544 44443 3444457999999999997765 3222211 12235688
Q ss_pred cCHHHHHHHHHHHHHH
Q 002535 512 LMALETIEGYAMLLEN 527 (911)
Q Consensus 512 Fs~e~ia~~y~~Lye~ 527 (911)
++|+..++++...+.+
T Consensus 356 ~sW~~~a~~~~~~l~~ 371 (373)
T cd04950 356 NSWDARAAEMLEALQE 371 (373)
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999865553
No 82
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=99.74 E-value=4.4e-17 Score=199.98 Aligned_cols=288 Identities=9% Similarity=0.075 Sum_probs=189.3
Q ss_pred CccEEEEcCcchhHHHHHHhhCCCCCCCEEEEEcCchhhHHHHHHHhhcchhhHhhHHHHHhhcceEEecCCc-------
Q 002535 215 NYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRATVVVFPDYV------- 287 (911)
Q Consensus 215 kpDIIhvhs~~~~~~ia~L~~~~~~giPvV~tiH~~~L~~~l~k~~~~~~d~lIs~~~~~~~~a~~vvfpn~~------- 287 (911)
.-|+|.+|..... .++.++.+.....++-+..|-.-....+-+... ....++ ..+..++.+.|.+..
T Consensus 133 ~~d~vwvhDYhl~-l~p~~lr~~~~~~~igfFlH~pfP~~~~f~~lp-~~~~ll----~~ll~~Dligf~t~~~~r~Fl~ 206 (726)
T PRK14501 133 PGDVVWVHDYQLM-LLPAMLRERLPDARIGFFLHIPFPSFEVFRLLP-WREEIL----EGLLGADLIGFHTYDYVRHFLS 206 (726)
T ss_pred CCCEEEEeCchhh-hHHHHHHhhCCCCcEEEEeeCCCCChHHHhhCC-ChHHHH----HHHhcCCeEEeCCHHHHHHHHH
Confidence 3589999998884 677777666777899999997211100000000 001100 011111222221111
Q ss_pred ------------cccccccCCCCCEEEeCCCCCCcccccccCchh-----hHHHHHhhCCCCCCeEEEEEEecccccccc
Q 002535 288 ------------LPMMYSAFDAGNYYVIPGSPAKAWEADTNMDLY-----NDTVRVKMGFKPDDLVIAIVGTQFMYRGLW 350 (911)
Q Consensus 288 ------------l~ii~~~id~~ki~VIpg~gVD~~~f~~~~~~~-----k~~lR~~lgi~~d~~vIL~VGsrl~~~KGi 350 (911)
..+.+.+ ...++.++| +|||+..|.+..... ...+|+.+ +++++|++|| ++.+.
T Consensus 207 ~~~~~l~~~~~~~~~~~~g-r~~~v~v~p-~GID~~~f~~~~~~~~~~~~~~~lr~~~---~~~~~il~Vg-Rl~~~--- 277 (726)
T PRK14501 207 SVLRVLGYETELGEIRLGG-RIVRVDAFP-MGIDYDKFHNSAQDPEVQEEIRRLRQDL---RGRKIILSID-RLDYT--- 277 (726)
T ss_pred HHHHHcCCccCCCeEEECC-EEEEEEEEE-CeEcHHHHHHHhcCchHHHHHHHHHHHc---CCCEEEEEec-Ccccc---
Confidence 1111111 113477888 599997765432211 12244442 3567999999 66666
Q ss_pred ccHHHHHHHHHHhhhhcccCCCCCCCEEEEEEeCCCC---C---chHHHHHHHHHHcC-------CCCccEEEcccc--c
Q 002535 351 LEHALILRALLPLFSEVSVENESNSPIKVMILSGDST---S---NYSVVIEAIAHNLH-------YPLGVVKHMAAE--G 415 (911)
Q Consensus 351 Kg~dlLLeAl~~L~~~~p~~~~~~~~vkLvIVGG~~~---e---~Y~~~Le~la~~lg-------L~~~~V~flG~v--~ 415 (911)
||+..+++|+..+.+++|+ ...+++|+++|++.+ + .+...+++++.+.+ ... .+.+.|+. +
T Consensus 278 Kgi~~~l~A~~~ll~~~p~---~~~~v~lv~v~~~sr~~~~~~~~l~~~~~~~v~~in~~~~~~~~~p-v~~~~~~~~~~ 353 (726)
T PRK14501 278 KGIPRRLLAFERFLEKNPE---WRGKVRLVQVAVPSRTGVPQYQEMKREIDELVGRINGEFGTVDWTP-IHYFYRSLPFE 353 (726)
T ss_pred cCHHHHHHHHHHHHHhCcc---ccCCEEEEEEecCCCcchHHHHHHHHHHHHHHHHHHhhcCCCCcce-EEEEeCCCCHH
Confidence 9999999999999888875 122478999983322 2 23344444443322 112 24566654 8
Q ss_pred cHHHHHHHcCeeEEcccCCcCCccHHHHHHHHc-----CCCEEecCCCccccccccCccEEEEcCCCHHHHHHHHHHHHH
Q 002535 416 DVDSVLNTADVVIYGSFLEEQTFPEILVKALCF-----RKPIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVIT 490 (911)
Q Consensus 416 dV~~~L~~ADVfVlPS~~E~qGFplvLLEAMA~-----G~PVIaTd~gGi~EiV~dg~nGlLv~~~D~eaLAeaI~~LLs 490 (911)
++..+|+.||++++||..| |||++++||||| |.||++...|+..+++ +|++++|.|++++|++|.++++
T Consensus 354 ~l~~ly~~aDv~v~~S~~E--G~~lv~~Eama~~~~~~g~~vls~~~G~~~~l~----~~llv~P~d~~~la~ai~~~l~ 427 (726)
T PRK14501 354 ELVALYRAADVALVTPLRD--GMNLVAKEYVASRTDGDGVLILSEMAGAAAELA----EALLVNPNDIEGIAAAIKRALE 427 (726)
T ss_pred HHHHHHHhccEEEeccccc--ccCcccceEEEEcCCCCceEEEecccchhHHhC----cCeEECCCCHHHHHHHHHHHHc
Confidence 9999999999999999999 899999999999 5577777778888875 3899999999999999999999
Q ss_pred cCCCcH-HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhc
Q 002535 491 NGKISP-FARNIASIGRRSVKNLMALETIEGYAMLLENVLK 530 (911)
Q Consensus 491 d~~~p~-~~~~mg~~ar~~ae~Fs~e~ia~~y~~Lye~vL~ 530 (911)
+ +. .+.+...++++.+.+|++...++.|.+.|+++.+
T Consensus 428 ~---~~~e~~~r~~~~~~~v~~~~~~~w~~~~l~~l~~~~~ 465 (726)
T PRK14501 428 M---PEEEQRERMQAMQERLRRYDVHKWASDFLDELREAAE 465 (726)
T ss_pred C---CHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 7 53 4444556788889999999999999999988754
No 83
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=99.73 E-value=4.5e-16 Score=175.79 Aligned_cols=335 Identities=13% Similarity=0.108 Sum_probs=193.6
Q ss_pred EEEEEeCCCCCChHHHHHHHHHHHHHHC-CCeEEEEEeCCC--cchhhhhhcCceE-EE--ecc--c----------hhH
Q 002535 146 QLALVFPDLLIDPQQLQMVTIAIALREI-GYAIQVYSLEDG--RAHEVWRNIGVPV-AI--LQT--G----------REK 207 (911)
Q Consensus 146 rIalI~~~L~~GGae~~v~~LAk~L~~~-GyeV~V~t~~~g--~~~~~~~~~gi~v-~~--l~~--~----------~~l 207 (911)
+|++++++- ..-..+.-+.+.|++. +.++.++..... ......+.++++. .. +.. . ..+
T Consensus 2 ~i~~~~gtr---~~~~~~~p~~~~l~~~~~~~~~~~~tg~h~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l 78 (365)
T TIGR00236 2 KVSIVLGTR---PEAIKMAPLIRALKKYPEIDSYVIVTAQHREMLDQVLDLFHLPPDYDLNIMSPGQTLGEITSNMLEGL 78 (365)
T ss_pred eEEEEEecC---HHHHHHHHHHHHHhhCCCCCEEEEEeCCCHHHHHHHHHhcCCCCCeeeecCCCCCCHHHHHHHHHHHH
Confidence 556555532 2223455667777765 556555554321 1222333455431 11 111 0 234
Q ss_pred HHhhhhcCccEEEEcCcchhHHHHHHhhCCCCCCCEEEEEcCchhhHHHHHHHhhcchhhHhhHHHHH-hhcceEEecCC
Q 002535 208 ASFVNWLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVF-NRATVVVFPDY 286 (911)
Q Consensus 208 ~~lI~~~kpDIIhvhs~~~~~~ia~L~~~~~~giPvV~tiH~~~L~~~l~k~~~~~~d~lIs~~~~~~-~~a~~vvfpn~ 286 (911)
...++..+||+||+|+.......+.++.. ..++|++.+-++....... ....+.. .+... +.++.++.++.
T Consensus 79 ~~~l~~~~pDiv~~~gd~~~~la~a~aa~-~~~ipv~h~~~g~~s~~~~----~~~~~~~---~r~~~~~~ad~~~~~s~ 150 (365)
T TIGR00236 79 EELLLEEKPDIVLVQGDTTTTLAGALAAF-YLQIPVGHVEAGLRTGDRY----SPMPEEI---NRQLTGHIADLHFAPTE 150 (365)
T ss_pred HHHHHHcCCCEEEEeCCchHHHHHHHHHH-HhCCCEEEEeCCCCcCCCC----CCCccHH---HHHHHHHHHHhccCCCH
Confidence 55677889999999986553233444433 5689987543331000000 0000000 00001 11232233332
Q ss_pred c--cccccccCCCCCEEEeCCCCCCcccccccCchhhHHHHHhhCCCCCCeEEEEEEeccc-cccccccHHHHHHHHHHh
Q 002535 287 V--LPMMYSAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFM-YRGLWLEHALILRALLPL 363 (911)
Q Consensus 287 ~--l~ii~~~id~~ki~VIpg~gVD~~~f~~~~~~~k~~lR~~lgi~~d~~vIL~VGsrl~-~~KGiKg~dlLLeAl~~L 363 (911)
. ..+...+++.+++.++++..+|... ..........++++++. ++.++++.+.+.. .. |+++.+++|+..+
T Consensus 151 ~~~~~l~~~G~~~~~I~vign~~~d~~~-~~~~~~~~~~~~~~~~~--~~~~vl~~~hr~~~~~---k~~~~ll~a~~~l 224 (365)
T TIGR00236 151 QAKDNLLRENVKADSIFVTGNTVIDALL-TNVEIAYSSPVLSEFGE--DKRYILLTLHRRENVG---EPLENIFKAIREI 224 (365)
T ss_pred HHHHHHHHcCCCcccEEEeCChHHHHHH-HHHhhccchhHHHhcCC--CCCEEEEecCchhhhh---hHHHHHHHHHHHH
Confidence 2 1222346777889999852234311 11111113345566652 3346666664432 33 8899999999999
Q ss_pred hhhcccCCCCCCCEEEEEEeCCCCCchHHHHHHHHHHcCCCCccEEEcccc--ccHHHHHHHcCeeEEcccCCcCCccHH
Q 002535 364 FSEVSVENESNSPIKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAE--GDVDSVLNTADVVIYGSFLEEQTFPEI 441 (911)
Q Consensus 364 ~~~~p~~~~~~~~vkLvIVGG~~~e~Y~~~Le~la~~lgL~~~~V~flG~v--~dV~~~L~~ADVfVlPS~~E~qGFplv 441 (911)
.+++|+ ++++++|++.. ...+.+.+.++..+ +|+++|.. .++..+++.||+++.+| |..
T Consensus 225 ~~~~~~-------~~~vi~~~~~~----~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~l~~ad~vv~~S-------g~~ 285 (365)
T TIGR00236 225 VEEFED-------VQIVYPVHLNP----VVREPLHKHLGDSK-RVHLIEPLEYLDFLNLAANSHLILTDS-------GGV 285 (365)
T ss_pred HHHCCC-------CEEEEECCCCh----HHHHHHHHHhCCCC-CEEEECCCChHHHHHHHHhCCEEEECC-------hhH
Confidence 877776 88998874322 22223444456555 79999966 57788999999999887 345
Q ss_pred HHHHHHcCCCEEec-CCCccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhcCHHHHHHH
Q 002535 442 LVKALCFRKPIIAP-DLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSVKNLMALETIEG 520 (911)
Q Consensus 442 LLEAMA~G~PVIaT-d~gGi~EiV~dg~nGlLv~~~D~eaLAeaI~~LLsd~~~p~~~~~mg~~ar~~ae~Fs~e~ia~~ 520 (911)
++|||+||+|||++ +.++.++++.++. +++++ .|+++++++|.+++++ ++.+++|+.+...+.+....+++++.
T Consensus 286 ~~EA~a~g~PvI~~~~~~~~~e~~~~g~-~~lv~-~d~~~i~~ai~~ll~~---~~~~~~~~~~~~~~g~~~a~~ri~~~ 360 (365)
T TIGR00236 286 QEEAPSLGKPVLVLRDTTERPETVEAGT-NKLVG-TDKENITKAAKRLLTD---PDEYKKMSNASNPYGDGEASERIVEE 360 (365)
T ss_pred HHHHHHcCCCEEECCCCCCChHHHhcCc-eEEeC-CCHHHHHHHHHHHHhC---hHHHHHhhhcCCCCcCchHHHHHHHH
Confidence 79999999999996 7788889888764 66664 7999999999999999 88888887665332233344444444
Q ss_pred H
Q 002535 521 Y 521 (911)
Q Consensus 521 y 521 (911)
.
T Consensus 361 l 361 (365)
T TIGR00236 361 L 361 (365)
T ss_pred H
Confidence 3
No 84
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.72 E-value=1.3e-14 Score=154.65 Aligned_cols=176 Identities=24% Similarity=0.348 Sum_probs=150.0
Q ss_pred eEEEEEEeccccccccccHHHHHHHHHHhhhhcccCCCCCCCEEEEEEe-CCCCCchHHHHHHHHHHcCCCCccEEEccc
Q 002535 335 LVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAA 413 (911)
Q Consensus 335 ~vIL~VGsrl~~~KGiKg~dlLLeAl~~L~~~~p~~~~~~~~vkLvIVG-G~~~e~Y~~~Le~la~~lgL~~~~V~flG~ 413 (911)
..++++|+ ..+. ||++.+++++..+....++ ++++++| |+.. ...+..++.+.+..+ .|.++|.
T Consensus 200 ~~i~~~g~-~~~~---k~~~~~i~~~~~~~~~~~~-------~~~~~~g~~~~~---~~~~~~~~~~~~~~~-~v~~~g~ 264 (381)
T COG0438 200 FVVLYVGR-LDPE---KGLDLLIEAAAKLKKRGPD-------IKLVIVGDGPER---REELEKLAKKLGLED-NVKFLGY 264 (381)
T ss_pred eEEEEeec-cChh---cCHHHHHHHHHHhhhhcCC-------eEEEEEcCCCcc---HHHHHHHHHHhCCCC-cEEEecc
Confidence 68999995 5555 9999999999999987765 8999999 6542 245566777777766 7999998
Q ss_pred cc--cHHHHHHHcCeeEEcccCCcCCccHHHHHHHHcCCCEEecCCCccccccccCccEEEEcCCCHHHHHHHHHHHHHc
Q 002535 414 EG--DVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITN 491 (911)
Q Consensus 414 v~--dV~~~L~~ADVfVlPS~~E~qGFplvLLEAMA~G~PVIaTd~gGi~EiV~dg~nGlLv~~~D~eaLAeaI~~LLsd 491 (911)
.. ++..+++.||++++||..| +||++++|||++|+|||+++.++..+++.++.+|++++..|++++++++..++++
T Consensus 265 ~~~~~~~~~~~~~~~~v~ps~~e--~~~~~~~Ea~a~g~pvi~~~~~~~~e~~~~~~~g~~~~~~~~~~~~~~i~~~~~~ 342 (381)
T COG0438 265 VPDEELAELLASADVFVLPSLSE--GFGLVLLEAMAAGTPVIASDVGGIPEVVEDGETGLLVPPGDVEELADALEQLLED 342 (381)
T ss_pred cCHHHHHHHHHhCCEEEeccccc--cchHHHHHHHhcCCcEEECCCCChHHHhcCCCceEecCCCCHHHHHHHHHHHhcC
Confidence 74 7888999999999999887 7999999999999999999999999999988778888877899999999999999
Q ss_pred CCCcHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHhc
Q 002535 492 GKISPFARNIASIGRRSV-KNLMALETIEGYAMLLENVLK 530 (911)
Q Consensus 492 ~~~p~~~~~mg~~ar~~a-e~Fs~e~ia~~y~~Lye~vL~ 530 (911)
++.++.++..+++.+ +.|+|+..++.+.+++.....
T Consensus 343 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (381)
T COG0438 343 ---PELREELGEAARERVEEEFSWERIAEQLLELYEELLA 379 (381)
T ss_pred ---HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 767778887666666 679999999999999987654
No 85
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.71 E-value=6.7e-16 Score=174.73 Aligned_cols=334 Identities=13% Similarity=0.082 Sum_probs=195.2
Q ss_pred EEEEEeCCCCCChHHHHHHHHHHHHHHCCCeEEEEEeCCCcchhhhhhcCce-----EEE-----------eccchhHHH
Q 002535 146 QLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVP-----VAI-----------LQTGREKAS 209 (911)
Q Consensus 146 rIalI~~~L~~GGae~~v~~LAk~L~~~GyeV~V~t~~~g~~~~~~~~~gi~-----v~~-----------l~~~~~l~~ 209 (911)
+|.++. ...||--.-.. +++.|++.++++.++..............+++ +.. +.....+.+
T Consensus 3 ki~i~~--Ggt~G~i~~a~-l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~ 79 (380)
T PRK00025 3 RIAIVA--GEVSGDLLGAG-LIRALKARAPNLEFVGVGGPRMQAAGCESLFDMEELAVMGLVEVLPRLPRLLKIRRRLKR 79 (380)
T ss_pred eEEEEe--cCcCHHHHHHH-HHHHHHhcCCCcEEEEEccHHHHhCCCccccCHHHhhhccHHHHHHHHHHHHHHHHHHHH
Confidence 444333 34556555555 99999999999999886542211110000111 111 111223455
Q ss_pred hhhhcCccEEEEcCcch-hHHHHHHhhCCCCCCCEEEEEcCchhhHHHHHHHhhcchhhHhhHHHHHhhcceEEecCCcc
Q 002535 210 FVNWLNYDGILVNSLEA-KVVISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRATVVVFPDYVL 288 (911)
Q Consensus 210 lI~~~kpDIIhvhs~~~-~~~ia~L~~~~~~giPvV~tiH~~~L~~~l~k~~~~~~d~lIs~~~~~~~~a~~vvfpn~~l 288 (911)
+++..+||+||++.... ...++..+. ..++|+++..|...+... . ... ....+.++.++.++...
T Consensus 80 ~l~~~kPdivi~~~~~~~~~~~a~~a~--~~~ip~i~~~~~~~~~~~-~--------~~~---~~~~~~~d~i~~~~~~~ 145 (380)
T PRK00025 80 RLLAEPPDVFIGIDAPDFNLRLEKKLR--KAGIPTIHYVSPSVWAWR-Q--------GRA---FKIAKATDHVLALFPFE 145 (380)
T ss_pred HHHHcCCCEEEEeCCCCCCHHHHHHHH--HCCCCEEEEeCCchhhcC-c--------hHH---HHHHHHHhhheeCCccC
Confidence 57778999999986432 112232232 347999877664321100 0 000 01122233333332221
Q ss_pred ccccccCCCCCEEEeCCCCCCcccccccCchhhHHHHHhhCCCCCCeEEEEE-EeccccccccccHHHHHHHHHHhhhhc
Q 002535 289 PMMYSAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIV-GTQFMYRGLWLEHALILRALLPLFSEV 367 (911)
Q Consensus 289 ~ii~~~id~~ki~VIpg~gVD~~~f~~~~~~~k~~lR~~lgi~~d~~vIL~V-Gsrl~~~KGiKg~dlLLeAl~~L~~~~ 367 (911)
........ .++.++. +++... . .....+...+++++++++.++++++ |++.... -+.++.+++|+..+.+++
T Consensus 146 ~~~~~~~g-~~~~~~G-~p~~~~--~-~~~~~~~~~~~~l~~~~~~~~il~~~gsr~~~~--~~~~~~l~~a~~~l~~~~ 218 (380)
T PRK00025 146 AAFYDKLG-VPVTFVG-HPLADA--I-PLLPDRAAARARLGLDPDARVLALLPGSRGQEI--KRLLPPFLKAAQLLQQRY 218 (380)
T ss_pred HHHHHhcC-CCeEEEC-cCHHHh--c-ccccChHHHHHHcCCCCCCCEEEEECCCCHHHH--HHHHHHHHHHHHHHHHhC
Confidence 11111111 1244443 344321 1 1111245677889988777665554 5444332 033678899999998777
Q ss_pred ccCCCCCCCEEEEEEeCCCCCchHHHHHHHHHHc-CCCCccEEEccccccHHHHHHHcCeeEEcccCCcCCccHHHHHHH
Q 002535 368 SVENESNSPIKVMILSGDSTSNYSVVIEAIAHNL-HYPLGVVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKAL 446 (911)
Q Consensus 368 p~~~~~~~~vkLvIVGG~~~e~Y~~~Le~la~~l-gL~~~~V~flG~v~dV~~~L~~ADVfVlPS~~E~qGFplvLLEAM 446 (911)
|+ ++++++||.. .+.+.+++.++++ ++. +.+.. .++..+|+.||++|++| |.+.+|||
T Consensus 219 ~~-------~~~ii~~~~~--~~~~~~~~~~~~~~~~~---v~~~~--~~~~~~~~~aDl~v~~s-------G~~~lEa~ 277 (380)
T PRK00025 219 PD-------LRFVLPLVNP--KRREQIEEALAEYAGLE---VTLLD--GQKREAMAAADAALAAS-------GTVTLELA 277 (380)
T ss_pred CC-------eEEEEecCCh--hhHHHHHHHHhhcCCCC---eEEEc--ccHHHHHHhCCEEEECc-------cHHHHHHH
Confidence 77 8999998521 1235677777655 443 44433 58999999999999987 56777999
Q ss_pred HcCCCEEec-----------------CCCccccccccCc--cEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 002535 447 CFRKPIIAP-----------------DLSNIRKYVDDRV--NGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRR 507 (911)
Q Consensus 447 A~G~PVIaT-----------------d~gGi~EiV~dg~--nGlLv~~~D~eaLAeaI~~LLsd~~~p~~~~~mg~~ar~ 507 (911)
++|+|||++ +.+++++++.++. .+++.+..|+++++++|.++++| ++.+++|++++.+
T Consensus 278 a~G~PvI~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ll~~---~~~~~~~~~~~~~ 354 (380)
T PRK00025 278 LLKVPMVVGYKVSPLTFWIAKRLVKVPYVSLPNLLAGRELVPELLQEEATPEKLARALLPLLAD---GARRQALLEGFTE 354 (380)
T ss_pred HhCCCEEEEEccCHHHHHHHHHHHcCCeeehHHHhcCCCcchhhcCCCCCHHHHHHHHHHHhcC---HHHHHHHHHHHHH
Confidence 999999987 4566678777654 55777888999999999999999 9999999988766
Q ss_pred HHHhcCHHHHHHHHHHHHHHH
Q 002535 508 SVKNLMALETIEGYAMLLENV 528 (911)
Q Consensus 508 ~ae~Fs~e~ia~~y~~Lye~v 528 (911)
..+.. ....+++..+.+.+.
T Consensus 355 ~~~~~-~~~a~~~~~~~i~~~ 374 (380)
T PRK00025 355 LHQQL-RCGADERAAQAVLEL 374 (380)
T ss_pred HHHHh-CCCHHHHHHHHHHHH
Confidence 55443 222344444444443
No 86
>KOG1387 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=99.65 E-value=5.3e-14 Score=151.73 Aligned_cols=366 Identities=13% Similarity=0.147 Sum_probs=228.1
Q ss_pred cCCCCCCCEEEEEeCCCC-CChHHHHHHHHHHHHHHCCC-eEEEEEeCCCcc--hhhh----hhcCce-------EEEec
Q 002535 138 HRFGYRKPQLALVFPDLL-IDPQQLQMVTIAIALREIGY-AIQVYSLEDGRA--HEVW----RNIGVP-------VAILQ 202 (911)
Q Consensus 138 ~r~~~rkprIalI~~~L~-~GGae~~v~~LAk~L~~~Gy-eV~V~t~~~g~~--~~~~----~~~gi~-------v~~l~ 202 (911)
+|+......+++++|-.+ .||.|+++....+.+++.-- .+.|+..++-+. .+++ ..+++. +..+.
T Consensus 37 ~~~~k~~ktvgfFHPYCNAGGGGErVLW~Avr~~q~k~~n~~~viYsGD~n~t~~~IL~k~k~~F~idlDs~nI~Fi~Lk 116 (465)
T KOG1387|consen 37 NRAEKNVKTVGFFHPYCNAGGGGERVLWKAVRITQRKFPNNVIVIYSGDFNVTPENILNKVKNKFDIDLDSDNIFFIYLK 116 (465)
T ss_pred hhhhhhceEEEEecccccCCCCcceehhHHHHHHHHhCCCceEEEEeCCCCCCHHHHHHHHHHhcCceecccceEEEEEE
Confidence 344444467788888776 46789998888888877543 333443343121 1111 222322 11111
Q ss_pred c------c---------hhHH------HhhhhcCccEEEEcCcchhHHHHHHhhCCCCCCCEEEEEcCchhhHHH-HHHH
Q 002535 203 T------G---------REKA------SFVNWLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRA-RNYA 260 (911)
Q Consensus 203 ~------~---------~~l~------~lI~~~kpDIIhvhs~~~~~~ia~L~~~~~~giPvV~tiH~~~L~~~l-~k~~ 260 (911)
. . +.+. ..+-...|||.+-.--.+ +-.++..+ +.++|++..+|-....... .+..
T Consensus 117 ~R~lVea~~~~hfTllgQaigsmIl~~Eai~r~~Pdi~IDtMGY~--fs~p~~r~-l~~~~V~aYvHYP~iS~DML~~l~ 193 (465)
T KOG1387|consen 117 LRYLVEASTWKHFTLLGQAIGSMILAFEAIIRFPPDIFIDTMGYP--FSYPIFRR-LRRIPVVAYVHYPTISTDMLKKLF 193 (465)
T ss_pred eeeeeecccccceehHHHHHHHHHHHHHHHHhCCchheEecCCCc--chhHHHHH-HccCceEEEEecccccHHHHHHHH
Confidence 0 0 0111 113336789866432222 33344433 6679999999974443211 1111
Q ss_pred hhcchhhH------------hhHHHHHhhcceEEecCCc-c-ccccccCCCCCEEEeCCCCCCcccccccCchhhHHHHH
Q 002535 261 SSGQLELL------------NDWKKVFNRATVVVFPDYV-L-PMMYSAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRV 326 (911)
Q Consensus 261 ~~~~d~lI------------s~~~~~~~~a~~vvfpn~~-l-~ii~~~id~~ki~VIpg~gVD~~~f~~~~~~~k~~lR~ 326 (911)
.+....+. ..+...=..++ ++..|+. . .-+.+..+..+..++.+ |-+. +.+.+
T Consensus 194 qrq~s~~l~~~KlaY~rlFa~lY~~~G~~ad-~vm~NssWT~nHI~qiW~~~~~~iVyP-PC~~-----------e~lks 260 (465)
T KOG1387|consen 194 QRQKSGILVWGKLAYWRLFALLYQSAGSKAD-IVMTNSSWTNNHIKQIWQSNTCSIVYP-PCST-----------EDLKS 260 (465)
T ss_pred hhhhcchhhhHHHHHHHHHHHHHHhccccce-EEEecchhhHHHHHHHhhccceeEEcC-CCCH-----------HHHHH
Confidence 11111011 11222212333 3333333 1 11111112223333331 3333 12333
Q ss_pred hhCC-CCCCeEEEEEEeccccccccccHHHHHHHHHHhhhhcccCCCCCCCEEEEEEe---CCCCCchHHHHHHHHHHcC
Q 002535 327 KMGF-KPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILS---GDSTSNYSVVIEAIAHNLH 402 (911)
Q Consensus 327 ~lgi-~~d~~vIL~VGsrl~~~KGiKg~dlLLeAl~~L~~~~p~~~~~~~~vkLvIVG---G~~~e~Y~~~Le~la~~lg 402 (911)
..+. ..+.+.++++| .+.+. |++. +++..+....+.|. .....+++|+|+| +++++++-..++..+.+++
T Consensus 261 ~~~te~~r~~~ll~l~-Q~RPE---KnH~-~Lql~Al~~~~~pl-~a~~~~iKL~ivGScRneeD~ervk~Lkd~a~~L~ 334 (465)
T KOG1387|consen 261 KFGTEGERENQLLSLA-QFRPE---KNHK-ILQLFALYLKNEPL-EASVSPIKLIIVGSCRNEEDEERVKSLKDLAEELK 334 (465)
T ss_pred HhcccCCcceEEEEEe-ecCcc---cccH-HHHHHHHHHhcCch-hhccCCceEEEEeccCChhhHHHHHHHHHHHHhcC
Confidence 3343 45667899999 77777 8887 55555544444443 2344569999999 4566667788899999999
Q ss_pred CCCccEEEcccc--ccHHHHHHHcCeeEEcccCCcCCccHHHHHHHHcCCCEEecCCCccc-ccccc---CccEEEEcCC
Q 002535 403 YPLGVVKHMAAE--GDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSNIR-KYVDD---RVNGYLFPKE 476 (911)
Q Consensus 403 L~~~~V~flG~v--~dV~~~L~~ADVfVlPS~~E~qGFplvLLEAMA~G~PVIaTd~gGi~-EiV~d---g~nGlLv~~~ 476 (911)
+++ +|.|.-.+ +++..+|..|.+-|..-..|. ||+.++|+||+|+-+|+.+.||.. ++|.+ ..+|++.+
T Consensus 335 i~~-~v~F~~N~Py~~lv~lL~~a~iGvh~MwNEH--FGIsVVEyMAAGlIpi~h~SgGP~lDIV~~~~G~~tGFla~-- 409 (465)
T KOG1387|consen 335 IPK-HVQFEKNVPYEKLVELLGKATIGVHTMWNEH--FGISVVEYMAAGLIPIVHNSGGPLLDIVTPWDGETTGFLAP-- 409 (465)
T ss_pred Ccc-ceEEEecCCHHHHHHHhccceeehhhhhhhh--cchhHHHHHhcCceEEEeCCCCCceeeeeccCCccceeecC--
Confidence 998 89998755 899999999999999998885 999999999999999999988865 66643 35899985
Q ss_pred CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcCC
Q 002535 477 NIKALTHIILQVITNGKISPFARNIASIGRRSVKNLMALETIEGYAMLLENVLKLP 532 (911)
Q Consensus 477 D~eaLAeaI~~LLsd~~~p~~~~~mg~~ar~~ae~Fs~e~ia~~y~~Lye~vL~~p 532 (911)
+.++.|++|.+++..+ ++.+..|+.+||..+.+|+..+..+.+.+.+.+++..+
T Consensus 410 t~~EYaE~iLkIv~~~--~~~r~~~r~~AR~s~~RFsE~~F~kd~~~~i~kll~e~ 463 (465)
T KOG1387|consen 410 TDEEYAEAILKIVKLN--YDERNMMRRNARKSLARFGELKFDKDWENPICKLLEEE 463 (465)
T ss_pred ChHHHHHHHHHHHHcC--HHHHHHHHHHHHHHHHHhhHHHHHHhHhHHHHHhhccc
Confidence 7899999999999851 45577899999999999999999999999998887653
No 87
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=99.65 E-value=2.1e-14 Score=167.14 Aligned_cols=207 Identities=8% Similarity=0.021 Sum_probs=160.7
Q ss_pred EEEeCCCCCCcccccccCchh-----hHHHHHhhCCCCCCeEEEEEEeccccccccccHHHHHHHHHHhhhhcccCCCCC
Q 002535 300 YYVIPGSPAKAWEADTNMDLY-----NDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESN 374 (911)
Q Consensus 300 i~VIpg~gVD~~~f~~~~~~~-----k~~lR~~lgi~~d~~vIL~VGsrl~~~KGiKg~dlLLeAl~~L~~~~p~~~~~~ 374 (911)
+.++| +|||+..|....... ...+|++++ +..+|+.|+ |+.+. ||+...++|+..+.+++|+ -.
T Consensus 250 v~~~P-iGID~~~f~~~~~~~~~~~~~~~lr~~~~---~~kiIl~VD-RLDy~---KGI~~kl~Afe~~L~~~Pe---~~ 318 (487)
T TIGR02398 250 LGAHP-VGTDPERIRSALAAASIREMMERIRSELA---GVKLILSAE-RVDYT---KGILEKLNAYERLLERRPE---LL 318 (487)
T ss_pred EEEEE-CEecHHHHHHHhcCchHHHHHHHHHHHcC---CceEEEEec-ccccc---cCHHHHHHHHHHHHHhCcc---cc
Confidence 56677 699997765432211 345777777 567999999 77777 9999999999999999986 23
Q ss_pred CCEEEEEEeCCCC------CchHHHHHHHHHHc-------CCCCccEEEcccc--ccHHHHHHHcCeeEEcccCCcCCcc
Q 002535 375 SPIKVMILSGDST------SNYSVVIEAIAHNL-------HYPLGVVKHMAAE--GDVDSVLNTADVVIYGSFLEEQTFP 439 (911)
Q Consensus 375 ~~vkLvIVGG~~~------e~Y~~~Le~la~~l-------gL~~~~V~flG~v--~dV~~~L~~ADVfVlPS~~E~qGFp 439 (911)
.+++|+++|.+.+ ..+..++++++.+. +... .+.+.+.+ +++..+|+.|||++.+|..| |+.
T Consensus 319 gkv~Lvqi~~psr~~v~~y~~l~~~v~~~v~~IN~~fg~~~~~p-v~~~~~~v~~~el~alYr~ADV~lvT~lrD--GmN 395 (487)
T TIGR02398 319 GKVTLVTACVPAASGMTIYDELQGQIEQAVGRINGRFARIGWTP-LQFFTRSLPYEEVSAWFAMADVMWITPLRD--GLN 395 (487)
T ss_pred CceEEEEEeCCCcccchHHHHHHHHHHHHHHHHhhccCCCCCcc-EEEEcCCCCHHHHHHHHHhCCEEEECcccc--ccC
Confidence 3489999994332 23556677777654 4444 46777765 88999999999999999999 899
Q ss_pred HHHHHHHHcCC----CEEecCCCccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHH-HHHHHHHHHHHHHhcCH
Q 002535 440 EILVKALCFRK----PIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPF-ARNIASIGRRSVKNLMA 514 (911)
Q Consensus 440 lvLLEAMA~G~----PVIaTd~gGi~EiV~dg~nGlLv~~~D~eaLAeaI~~LLsd~~~p~~-~~~mg~~ar~~ae~Fs~ 514 (911)
++..|+|||+. |+|.|..+|..+.+. .+++|+|.|++++|++|.+.+++ |.. +++--+.-++.+.+++.
T Consensus 396 LVa~Eyva~~~~~~GvLILSefaGaa~~l~---~AllVNP~d~~~~A~ai~~AL~m---~~~Er~~R~~~l~~~v~~~d~ 469 (487)
T TIGR02398 396 LVAKEYVAAQGLLDGVLVLSEFAGAAVELK---GALLTNPYDPVRMDETIYVALAM---PKAEQQARMREMFDAVNYYDV 469 (487)
T ss_pred cchhhHHhhhcCCCCCEEEeccccchhhcC---CCEEECCCCHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHhhCCH
Confidence 99999999999 999999999987763 48999999999999999999998 653 33334455677788998
Q ss_pred HHHHHHHHHHHH
Q 002535 515 LETIEGYAMLLE 526 (911)
Q Consensus 515 e~ia~~y~~Lye 526 (911)
...++.+..-++
T Consensus 470 ~~W~~~fl~~l~ 481 (487)
T TIGR02398 470 QRWADEFLAAVS 481 (487)
T ss_pred HHHHHHHHHHhh
Confidence 888887765443
No 88
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=99.65 E-value=1.4e-14 Score=162.51 Aligned_cols=297 Identities=11% Similarity=0.008 Sum_probs=176.5
Q ss_pred HHHHHHHHHHHC-CCeEEEEEeCCCc---chh--hhh--hcCceEEE--ecc-----------chhHHHhhhhcCccEEE
Q 002535 162 QMVTIAIALREI-GYAIQVYSLEDGR---AHE--VWR--NIGVPVAI--LQT-----------GREKASFVNWLNYDGIL 220 (911)
Q Consensus 162 ~v~~LAk~L~~~-GyeV~V~t~~~g~---~~~--~~~--~~gi~v~~--l~~-----------~~~l~~lI~~~kpDIIh 220 (911)
.+.-+.+.|++. ++++.++..+..- ... .+. ..+..+.. ... ...+...+...+||+||
T Consensus 14 ~~~pl~~~l~~~~~~~~~~~~tg~h~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDvV~ 93 (363)
T cd03786 14 KLAPLIRALKKDPGFELVLVVTGQHYDMEMGVTFFEILFIIKPDYDLLLGSDSQSLGAQTAGLLIGLEAVLLEEKPDLVL 93 (363)
T ss_pred HHHHHHHHHhcCCCCCEEEEEeCCCCChhhhHHHHHhhCCCCCCEEEecCCCCCCHHHHHHHHHHHHHHHHHHhCCCEEE
Confidence 455677888876 8999977764311 111 111 11111211 111 12234446667999999
Q ss_pred EcCcchhHHHHHHhhCCCCCCCEEEEEcCchh---h--HHH-HHHHhhcchhhHhhHHHHHhhcceEEecCCc--ccccc
Q 002535 221 VNSLEAKVVISNIMQEPFKSLPLVWTIHEGTL---A--TRA-RNYASSGQLELLNDWKKVFNRATVVVFPDYV--LPMMY 292 (911)
Q Consensus 221 vhs~~~~~~ia~L~~~~~~giPvV~tiH~~~L---~--~~l-~k~~~~~~d~lIs~~~~~~~~a~~vvfpn~~--l~ii~ 292 (911)
+|........+.++.+ ..++|++.+.|+... . ... ..... +.++.++.++.. ..+..
T Consensus 94 ~~g~~~~~~~~~~aa~-~~~iPvv~~~~g~~s~~~~~~~~~~r~~~~--------------~~ad~~~~~s~~~~~~l~~ 158 (363)
T cd03786 94 VLGDTNETLAAALAAF-KLGIPVAHVEAGLRSFDRGMPDEENRHAID--------------KLSDLHFAPTEEARRNLLQ 158 (363)
T ss_pred EeCCchHHHHHHHHHH-HcCCCEEEEecccccCCCCCCchHHHHHHH--------------HHhhhccCCCHHHHHHHHH
Confidence 9975542233333433 568998876654211 0 000 11111 222333333322 12233
Q ss_pred ccCCCCCEEEeCCCCCCcccccccCchhhHHHHHhhCCCCCCeEEEEEEeccccccccccHHHHHHHHHHhhhhcccCCC
Q 002535 293 SAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENE 372 (911)
Q Consensus 293 ~~id~~ki~VIpg~gVD~~~f~~~~~~~k~~lR~~lgi~~d~~vIL~VGsrl~~~KGiKg~dlLLeAl~~L~~~~p~~~~ 372 (911)
.+++.+++.++++..+|...+.. ........++.+++++++++++++|+.... ...|+++.+++|+..+... +
T Consensus 159 ~G~~~~kI~vign~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~vlv~~~r~~~~-~~~k~~~~l~~al~~l~~~--~--- 231 (363)
T cd03786 159 EGEPPERIFVVGNTMIDALLRLL-ELAKKELILELLGLLPKKYILVTLHRVENV-DDGEQLEEILEALAELAEE--D--- 231 (363)
T ss_pred cCCCcccEEEECchHHHHHHHHH-HhhccchhhhhcccCCCCEEEEEeCCcccc-CChHHHHHHHHHHHHHHhc--C---
Confidence 46677889888853345422111 111112234567777666666666643331 1228999999999988643 3
Q ss_pred CCCCEEEEEEe-CCCCCchHHHHHHHHHHcCC-CCccEEEcccc--ccHHHHHHHcCeeEEcccCCcCCccHHHHHHHHc
Q 002535 373 SNSPIKVMILS-GDSTSNYSVVIEAIAHNLHY-PLGVVKHMAAE--GDVDSVLNTADVVIYGSFLEEQTFPEILVKALCF 448 (911)
Q Consensus 373 ~~~~vkLvIVG-G~~~e~Y~~~Le~la~~lgL-~~~~V~flG~v--~dV~~~L~~ADVfVlPS~~E~qGFplvLLEAMA~ 448 (911)
+.+++.| ++.. ..+++.++++++ .+ +|.|+|.. +++..+|..||++|.|| | + ++.|||++
T Consensus 232 ----~~vi~~~~~~~~----~~l~~~~~~~~~~~~-~v~~~~~~~~~~~~~l~~~ad~~v~~S-----g-g-i~~Ea~~~ 295 (363)
T cd03786 232 ----VPVVFPNHPRTR----PRIREAGLEFLGHHP-NVLLISPLGYLYFLLLLKNADLVLTDS-----G-G-IQEEASFL 295 (363)
T ss_pred ----CEEEEECCCChH----HHHHHHHHhhccCCC-CEEEECCcCHHHHHHHHHcCcEEEEcC-----c-c-HHhhhhhc
Confidence 6776666 4433 677788887776 44 79999754 78999999999999998 3 3 47899999
Q ss_pred CCCEEecCC-CccccccccCccEEEEcCC-CHHHHHHHHHHHHHcCCCcHHHHHHH
Q 002535 449 RKPIIAPDL-SNIRKYVDDRVNGYLFPKE-NIKALTHIILQVITNGKISPFARNIA 502 (911)
Q Consensus 449 G~PVIaTd~-gGi~EiV~dg~nGlLv~~~-D~eaLAeaI~~LLsd~~~p~~~~~mg 502 (911)
|+|||+++. +..++.+.+| ..+..+ |+++++++|.+++++ +....+|.
T Consensus 296 g~PvI~~~~~~~~~~~~~~g---~~~~~~~~~~~i~~~i~~ll~~---~~~~~~~~ 345 (363)
T cd03786 296 GVPVLNLRDRTERPETVESG---TNVLVGTDPEAILAAIEKLLSD---EFAYSLMS 345 (363)
T ss_pred CCCEEeeCCCCccchhhhee---eEEecCCCHHHHHHHHHHHhcC---chhhhcCC
Confidence 999999874 4456666554 334333 799999999999999 77776663
No 89
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=99.60 E-value=3e-13 Score=151.55 Aligned_cols=286 Identities=10% Similarity=0.031 Sum_probs=179.0
Q ss_pred CCChHHHHHHHHHHHHHHCCCeEEEEEeCCCcchhhhhhcCceEEEeccchhHHHhhhhcCc-cEEEEcCcchhHH-H-H
Q 002535 155 LIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNY-DGILVNSLEAKVV-I-S 231 (911)
Q Consensus 155 ~~GGae~~v~~LAk~L~~~GyeV~V~t~~~g~~~~~~~~~gi~v~~l~~~~~l~~lI~~~kp-DIIhvhs~~~~~~-i-a 231 (911)
...++.+.-..+.+.+.+.|+++..+...+.. ...+.. ....+...+...++ |+||++++...+. + .
T Consensus 13 ~~~a~~ka~~d~~~~~~~~g~~~~~~~~~~~~-~~~~~~---------~~~~~~~~~~~~~~~Dvv~~~~P~~~~~~~~~ 82 (333)
T PRK09814 13 GNSAALKAKNDVTKIAKQLGFEELGIYFYNIK-RDSLSE---------RSKRLDGILASLKPGDIVIFQFPTWNGFEFDR 82 (333)
T ss_pred ccchHHHHHHHHHHHHHHCCCeEeEEEecccc-cchHHH---------HHHHHHHHHhcCCCCCEEEEECCCCchHHHHH
Confidence 34577788888999999999987665432211 000000 01122334555666 9999999866431 1 2
Q ss_pred HHh-hCCCCCCCEEEEEcCchhhHHHHHHHhhcchhhHhhHHHHHhhcceEEecCCccc--cccccCCCCCEEEeCCCCC
Q 002535 232 NIM-QEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRATVVVFPDYVLP--MMYSAFDAGNYYVIPGSPA 308 (911)
Q Consensus 232 ~L~-~~~~~giPvV~tiH~~~L~~~l~k~~~~~~d~lIs~~~~~~~~a~~vvfpn~~l~--ii~~~id~~ki~VIpg~gV 308 (911)
.++ ..+..++|+|+++|+.... ..... ..........++.++.+++++.... +...++...++.++++ ..
T Consensus 83 ~~~~~~k~~~~k~i~~ihD~~~~-~~~~~-----~~~~~~~~~~~~~aD~iI~~S~~~~~~l~~~g~~~~~i~~~~~-~~ 155 (333)
T PRK09814 83 LFVDKLKKKQVKIIILIHDIEPL-RFDSN-----YYLMKEEIDMLNLADVLIVHSKKMKDRLVEEGLTTDKIIVQGI-FD 155 (333)
T ss_pred HHHHHHHHcCCEEEEEECCcHHH-hcccc-----chhhHHHHHHHHhCCEEEECCHHHHHHHHHcCCCcCceEeccc-cc
Confidence 222 1112379999999973211 11100 0012234566778888888877622 2234455556666652 11
Q ss_pred CcccccccCchhhHHHHHhhCCCCCCeEEEEEEeccccccccccHHHHHHHHHHhhhhcccCCCCCCCEEEEEEe-CCCC
Q 002535 309 KAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILS-GDST 387 (911)
Q Consensus 309 D~~~f~~~~~~~k~~lR~~lgi~~d~~vIL~VGsrl~~~KGiKg~dlLLeAl~~L~~~~p~~~~~~~~vkLvIVG-G~~~ 387 (911)
+.. .... + ......+.++|+|+ +... .. ++ ...++ ++|+|+| |+..
T Consensus 156 ~~~---~~~~------~---~~~~~~~~i~yaG~-l~k~---~~----l~------~~~~~-------~~l~i~G~g~~~ 202 (333)
T PRK09814 156 YLN---DIEL------V---KTPSFQKKINFAGN-LEKS---PF----LK------NWSQG-------IKLTVFGPNPED 202 (333)
T ss_pred ccc---cccc------c---ccccCCceEEEecC-hhhc---hH----HH------hcCCC-------CeEEEECCCccc
Confidence 110 0000 0 01123558999994 4432 11 11 12234 8999999 7654
Q ss_pred CchHHHHHHHHHHcCCCCccEEEcccc--ccHHHHHHHcCeeEEcccC----------CcCCccHHHHHHHHcCCCEEec
Q 002535 388 SNYSVVIEAIAHNLHYPLGVVKHMAAE--GDVDSVLNTADVVIYGSFL----------EEQTFPEILVKALCFRKPIIAP 455 (911)
Q Consensus 388 e~Y~~~Le~la~~lgL~~~~V~flG~v--~dV~~~L~~ADVfVlPS~~----------E~qGFplvLLEAMA~G~PVIaT 455 (911)
+ ...+ +|+|+|+. +++..+|+. |+.+.+... .. .+|.++.|+||||+|||++
T Consensus 203 ~-------------~~~~-~V~f~G~~~~eel~~~l~~-~~gLv~~~~~~~~~~~~y~~~-~~P~K~~~ymA~G~PVI~~ 266 (333)
T PRK09814 203 L-------------ENSA-NISYKGWFDPEELPNELSK-GFGLVWDGDTNDGEYGEYYKY-NNPHKLSLYLAAGLPVIVW 266 (333)
T ss_pred c-------------ccCC-CeEEecCCCHHHHHHHHhc-CcCeEEcCCCCCccchhhhhc-cchHHHHHHHHCCCCEEEC
Confidence 1 2334 69999987 788888888 655543211 12 4799999999999999999
Q ss_pred CCCccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhcC
Q 002535 456 DLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSVKNLM 513 (911)
Q Consensus 456 d~gGi~EiV~dg~nGlLv~~~D~eaLAeaI~~LLsd~~~p~~~~~mg~~ar~~ae~Fs 513 (911)
+.+++.++|.++.+|++++ +.++++++|..+ + ++.+.+|++++++.++++.
T Consensus 267 ~~~~~~~~V~~~~~G~~v~--~~~el~~~l~~~--~---~~~~~~m~~n~~~~~~~~~ 317 (333)
T PRK09814 267 SKAAIADFIVENGLGFVVD--SLEELPEIIDNI--T---EEEYQEMVENVKKISKLLR 317 (333)
T ss_pred CCccHHHHHHhCCceEEeC--CHHHHHHHHHhc--C---HHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999998 788999999985 3 4668889999999987654
No 90
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=99.55 E-value=1.5e-14 Score=139.42 Aligned_cols=131 Identities=23% Similarity=0.305 Sum_probs=94.4
Q ss_pred eEEEEEEeccccccccccHHHHHH-HHHHhhhhcccCCCCCCCEEEEEEe-CCCCCchHHHHHHHHHHcCCCCccEEEcc
Q 002535 335 LVIAIVGTQFMYRGLWLEHALILR-ALLPLFSEVSVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMA 412 (911)
Q Consensus 335 ~vIL~VGsrl~~~KGiKg~dlLLe-Al~~L~~~~p~~~~~~~~vkLvIVG-G~~~e~Y~~~Le~la~~lgL~~~~V~flG 412 (911)
++++++|+.... |+++.+++ ++.++.++.|+ ++|+|+| ++. .++++ ..+ +|+++|
T Consensus 3 ~~i~~~g~~~~~----k~~~~li~~~~~~l~~~~p~-------~~l~i~G~~~~------~l~~~-----~~~-~v~~~g 59 (135)
T PF13692_consen 3 LYIGYLGRIRPD----KGLEELIEAALERLKEKHPD-------IELIIIGNGPD------ELKRL-----RRP-NVRFHG 59 (135)
T ss_dssp EEEE--S-SSGG----GTHHHHHH-HHHHHHHHSTT-------EEEEEECESS-------HHCCH-----HHC-TEEEE-
T ss_pred cccccccccccc----ccccchhhhHHHHHHHHCcC-------EEEEEEeCCHH------HHHHh-----cCC-CEEEcC
Confidence 577888844444 99999999 99999999888 9999999 443 23333 123 699999
Q ss_pred ccccHHHHHHHcCeeEEcccCCcCCccHHHHHHHHcCCCEEecCCCccccccccCccEEEEcCCCHHHHHHHHHHHHHc
Q 002535 413 AEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITN 491 (911)
Q Consensus 413 ~v~dV~~~L~~ADVfVlPS~~E~qGFplvLLEAMA~G~PVIaTd~gGi~EiV~dg~nGlLv~~~D~eaLAeaI~~LLsd 491 (911)
+.+++.++++.||+++.|+...+ ++|.+++|||++|+|||+++. +..+++.....|.++ .+|+++++++|.++++|
T Consensus 60 ~~~e~~~~l~~~dv~l~p~~~~~-~~~~k~~e~~~~G~pvi~~~~-~~~~~~~~~~~~~~~-~~~~~~l~~~i~~l~~d 135 (135)
T PF13692_consen 60 FVEELPEILAAADVGLIPSRFNE-GFPNKLLEAMAAGKPVIASDN-GAEGIVEEDGCGVLV-ANDPEELAEAIERLLND 135 (135)
T ss_dssp S-HHHHHHHHC-SEEEE-BSS-S-CC-HHHHHHHCTT--EEEEHH-HCHCHS---SEEEE--TT-HHHHHHHHHHHHH-
T ss_pred CHHHHHHHHHhCCEEEEEeeCCC-cCcHHHHHHHHhCCCEEECCc-chhhheeecCCeEEE-CCCHHHHHHHHHHHhcC
Confidence 99899999999999999996544 799999999999999999998 566677655567777 78999999999999976
No 91
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=99.54 E-value=1.1e-13 Score=163.30 Aligned_cols=165 Identities=16% Similarity=0.147 Sum_probs=146.8
Q ss_pred EEEEEE--eccccccccccHHHHHHHHHHhhhhcccCCCCCCCEEEEEEe-CCCCCchHHHHHHHHHHcCCC--------
Q 002535 336 VIAIVG--TQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYP-------- 404 (911)
Q Consensus 336 vIL~VG--srl~~~KGiKg~dlLLeAl~~L~~~~p~~~~~~~~vkLvIVG-G~~~e~Y~~~Le~la~~lgL~-------- 404 (911)
.+++++ +. +. |.++.+|+|+.++.++.|+ ++|.+.| |.. +.+...+++++++++++
T Consensus 321 ~~I~v~idrL-~e----k~~~~~I~av~~~~~~~p~-------~~L~~~gy~~~-~~~~~~l~~~i~~~~~~~~~~~~~~ 387 (519)
T TIGR03713 321 TEIGFWIDGL-SD----EELQQILQQLLQYILKNPD-------YELKILTYNND-NDITQLLEDILEQINEEYNQDKNFF 387 (519)
T ss_pred eEEEEEcCCC-Ch----HHHHHHHHHHHHHHhhCCC-------eEEEEEEecCc-hhHHHHHHHHHHHHHhhhchhhhcc
Confidence 566666 66 55 9999999999999999998 9999999 743 34567787887777666
Q ss_pred ---------------------CccEEEccccc--cHHHHHHHcCeeEEcccCCcCCccHHHHHHHHcCCCEEecCCCccc
Q 002535 405 ---------------------LGVVKHMAAEG--DVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSNIR 461 (911)
Q Consensus 405 ---------------------~~~V~flG~v~--dV~~~L~~ADVfVlPS~~E~qGFplvLLEAMA~G~PVIaTd~gGi~ 461 (911)
+ +|.|.|+.. ++.+.|..+.++|.+|..| ||+ +++||+++|+|+| .-|..
T Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~-~v~f~gy~~e~dl~~~~~~arl~id~s~~e--g~~-~~ieAiS~GiPqI---nyg~~ 460 (519)
T TIGR03713 388 SLSEQDENQPILQTDEEQKEKE-RIAFTTLTNEEDLISALDKLRLIIDLSKEP--DLY-TQISGISAGIPQI---NKVET 460 (519)
T ss_pred ccchhhhhhhcccchhhccccc-EEEEEecCCHHHHHHHHhhheEEEECCCCC--ChH-HHHHHHHcCCCee---ecCCc
Confidence 5 899999986 9999999999999999988 799 9999999999999 44679
Q ss_pred cccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 002535 462 KYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSVKNLMALETIEGYAMLL 525 (911)
Q Consensus 462 EiV~dg~nGlLv~~~D~eaLAeaI~~LLsd~~~p~~~~~mg~~ar~~ae~Fs~e~ia~~y~~Ly 525 (911)
++|.||+||+++ +|..+|+++|..++.+ ++.+.++...+.+.+++||.+++.++|.+++
T Consensus 461 ~~V~d~~NG~li--~d~~~l~~al~~~L~~---~~~wn~~~~~sy~~~~~yS~~~i~~kW~~~~ 519 (519)
T TIGR03713 461 DYVEHNKNGYII--DDISELLKALDYYLDN---LKNWNYSLAYSIKLIDDYSSENIIERLNELI 519 (519)
T ss_pred eeeEcCCCcEEe--CCHHHHHHHHHHHHhC---HHHHHHHHHHHHHHHHHhhHHHHHHHHHhhC
Confidence 999999999999 6999999999999999 9999999999999999999999999998753
No 92
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=99.53 E-value=4.6e-13 Score=165.10 Aligned_cols=291 Identities=12% Similarity=0.122 Sum_probs=186.6
Q ss_pred CccEEEEcCcchhHHHHHHhhCCCCCCCEEEEEcCchhhHHHHHHHhhcchhhHhhHHHHHhhcceEEecCCc-------
Q 002535 215 NYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRATVVVFPDYV------- 287 (911)
Q Consensus 215 kpDIIhvhs~~~~~~ia~L~~~~~~giPvV~tiH~~~L~~~l~k~~~~~~d~lIs~~~~~~~~a~~vvfpn~~------- 287 (911)
.=|+|.+|..... .+..++.+.....++-+..|..-....+-+.+. ....++ ..+-.++.+.|.+..
T Consensus 231 ~gD~VWVHDYHL~-LlP~~LR~~~p~~~IGfFlHiPFPs~Eifr~LP-~r~elL----~glL~aDlIGFqT~~y~rhFl~ 304 (934)
T PLN03064 231 EGDVVWCHDYHLM-FLPKCLKEYNSNMKVGWFLHTPFPSSEIHRTLP-SRSELL----RSVLAADLVGFHTYDYARHFVS 304 (934)
T ss_pred CCCEEEEecchhh-HHHHHHHHhCCCCcEEEEecCCCCChHHHhhCC-cHHHHH----HHHhcCCeEEeCCHHHHHHHHH
Confidence 3479999998884 777777666778899999997211111100000 001110 111122222222211
Q ss_pred -------cccccccCC-CC---CEEEeCCCCCCcccccccCchh-----hHHHHHhhCCCCCCeEEEEEEeccccccccc
Q 002535 288 -------LPMMYSAFD-AG---NYYVIPGSPAKAWEADTNMDLY-----NDTVRVKMGFKPDDLVIAIVGTQFMYRGLWL 351 (911)
Q Consensus 288 -------l~ii~~~id-~~---ki~VIpg~gVD~~~f~~~~~~~-----k~~lR~~lgi~~d~~vIL~VGsrl~~~KGiK 351 (911)
.......+. .+ ++.+.| .|||+..|....... ...++++++ ++.+|+.|+ ++.+. |
T Consensus 305 ~c~rlLg~~~~~~~v~~~Gr~v~V~~~P-iGID~~~f~~~~~~~~v~~~~~~lr~~~~---g~kiIlgVD-RLD~~---K 376 (934)
T PLN03064 305 ACTRILGLEGTPEGVEDQGRLTRVAAFP-IGIDSDRFIRALETPQVQQHIKELKERFA---GRKVMLGVD-RLDMI---K 376 (934)
T ss_pred HHHHHhCccccCCeEEECCEEEEEEEEe-CEEcHHHHHHHhcChhHHHHHHHHHHHhC---CceEEEEee-ccccc---c
Confidence 000001111 12 244555 789987665432211 235666655 456999999 77776 9
Q ss_pred cHHHHHHHHHHhhhhcccCCCCCCCEEEEEEe-C-----CCCCchHHHHHHHHHHcCCCCc-----cEEEcc---ccccH
Q 002535 352 EHALILRALLPLFSEVSVENESNSPIKVMILS-G-----DSTSNYSVVIEAIAHNLHYPLG-----VVKHMA---AEGDV 417 (911)
Q Consensus 352 g~dlLLeAl~~L~~~~p~~~~~~~~vkLvIVG-G-----~~~e~Y~~~Le~la~~lgL~~~-----~V~flG---~v~dV 417 (911)
|+...++|+..+.+++|+ -..++.|+-+. . +....+..++.+++.+.+-.-+ -|.++. ..+++
T Consensus 377 GI~~kL~AfE~fL~~~Pe---~r~kVVLvQIa~psr~~v~eY~~l~~~V~~~V~rIN~~fg~~~w~Pv~~~~~~l~~eeL 453 (934)
T PLN03064 377 GIPQKILAFEKFLEENPE---WRDKVVLLQIAVPTRTDVPEYQKLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFHAL 453 (934)
T ss_pred CHHHHHHHHHHHHHhCcc---ccCCEEEEEEcCCCCCCcHHHHHHHHHHHHHHHHHhhhccCCCcceEEEeccCCCHHHH
Confidence 999999999999988887 11124444444 1 1222233345554443321111 144443 12789
Q ss_pred HHHHHHcCeeEEcccCCcCCccHHHHHHHHcCC----CEEecCCCccccccccCccEEEEcCCCHHHHHHHHHHHHH-cC
Q 002535 418 DSVLNTADVVIYGSFLEEQTFPEILVKALCFRK----PIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVIT-NG 492 (911)
Q Consensus 418 ~~~L~~ADVfVlPS~~E~qGFplvLLEAMA~G~----PVIaTd~gGi~EiV~dg~nGlLv~~~D~eaLAeaI~~LLs-d~ 492 (911)
..+|+.|||+++||..| |++++..|||+|+. ++|.|..+|..+.+ +..+++|+|.|++++|++|.+.+. +
T Consensus 454 ~AlY~~ADV~lvTslrD--GmNLva~Eyva~~~~~~GvLILSEfaGaa~~L--~~~AllVNP~D~~~vA~AI~~AL~M~- 528 (934)
T PLN03064 454 CALYAVTDVALVTSLRD--GMNLVSYEFVACQDSKKGVLILSEFAGAAQSL--GAGAILVNPWNITEVAASIAQALNMP- 528 (934)
T ss_pred HHHHHhCCEEEeCcccc--ccCchHHHHHHhhcCCCCCeEEeCCCchHHHh--CCceEEECCCCHHHHHHHHHHHHhCC-
Confidence 99999999999999999 89999999999955 55569999988877 335999999999999999999999 5
Q ss_pred CCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHh
Q 002535 493 KISPFARNIASIGRRSVKNLMALETIEGYAMLLENVL 529 (911)
Q Consensus 493 ~~p~~~~~mg~~ar~~ae~Fs~e~ia~~y~~Lye~vL 529 (911)
+++++++.++.++.+.++++...++.+.+-++.+.
T Consensus 529 --~~Er~~r~~~~~~~V~~~d~~~Wa~~fl~~L~~~~ 563 (934)
T PLN03064 529 --EEEREKRHRHNFMHVTTHTAQEWAETFVSELNDTV 563 (934)
T ss_pred --HHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHH
Confidence 56777888899999999999999999887776653
No 93
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=99.52 E-value=2.1e-12 Score=147.76 Aligned_cols=321 Identities=12% Similarity=0.060 Sum_probs=183.5
Q ss_pred CEEEEEeCCCCCChHHHHHHHHHHHHHHCCCeEEEEEeCCCcchhhhhhcCce-----EEE----ec-------cchhHH
Q 002535 145 PQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVP-----VAI----LQ-------TGREKA 208 (911)
Q Consensus 145 prIalI~~~L~~GGae~~v~~LAk~L~~~GyeV~V~t~~~g~~~~~~~~~gi~-----v~~----l~-------~~~~l~ 208 (911)
|+|.++.+ ..||--.-. .++++|++.++++.++....+.....--..+++ +.. ++ ......
T Consensus 6 ~ki~i~aG--gtsGhi~pa-al~~~l~~~~~~~~~~g~gg~~m~~~g~~~~~~~~~l~v~G~~~~l~~~~~~~~~~~~~~ 82 (385)
T TIGR00215 6 PTIALVAG--EASGDILGA-GLRQQLKEHYPNARFIGVAGPRMAAEGCEVLYSMEELSVMGLREVLGRLGRLLKIRKEVV 82 (385)
T ss_pred CeEEEEeC--CccHHHHHH-HHHHHHHhcCCCcEEEEEccHHHHhCcCccccChHHhhhccHHHHHHHHHHHHHHHHHHH
Confidence 55554443 455555445 999999999999999887643221110000111 111 11 112234
Q ss_pred HhhhhcCccEEEEcCcchhHHHHHHhhCCCCCCCEEEEEcCch--hhHHHHHHHhhcchhhHhhHHHHHhhcceEEecCC
Q 002535 209 SFVNWLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGT--LATRARNYASSGQLELLNDWKKVFNRATVVVFPDY 286 (911)
Q Consensus 209 ~lI~~~kpDIIhvhs~~~~~~ia~L~~~~~~giPvV~tiH~~~--L~~~l~k~~~~~~d~lIs~~~~~~~~a~~vvfpn~ 286 (911)
+.++..+||+|+++.....+....... +..++|+++.+.-.. +...-.+...+.++.+++.+....+.
T Consensus 83 ~~l~~~kPd~vi~~g~~~~~~~~a~aa-~~~gip~v~~i~P~~waw~~~~~r~l~~~~d~v~~~~~~e~~~--------- 152 (385)
T TIGR00215 83 QLAKQAKPDLLVGIDAPDFNLTKELKK-KDPGIKIIYYISPQVWAWRKWRAKKIEKATDFLLAILPFEKAF--------- 152 (385)
T ss_pred HHHHhcCCCEEEEeCCCCccHHHHHHH-hhCCCCEEEEeCCcHhhcCcchHHHHHHHHhHhhccCCCcHHH---------
Confidence 457778999999998533222222233 356899986543111 11112334444455544322211000
Q ss_pred ccccccccCCCCCEEEeCCCCCCcccccccCchhhHHHHHhhCCCCCCeEEEEE-Eecccc-ccccccHHHHHHHHHHhh
Q 002535 287 VLPMMYSAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIV-GTQFMY-RGLWLEHALILRALLPLF 364 (911)
Q Consensus 287 ~l~ii~~~id~~ki~VIpg~gVD~~~f~~~~~~~k~~lR~~lgi~~d~~vIL~V-Gsrl~~-~KGiKg~dlLLeAl~~L~ 364 (911)
+... ..+..++. +|+.... ... ...+...|++++++++.++|+++ ||+..+ + |++..+++|+..+.
T Consensus 153 -----~~~~-g~~~~~vG-nPv~~~~-~~~-~~~~~~~r~~lgl~~~~~~Ilvl~GSR~aei~---k~~~~ll~a~~~l~ 220 (385)
T TIGR00215 153 -----YQKK-NVPCRFVG-HPLLDAI-PLY-KPDRKSAREKLGIDHNGETLALLPGSRGSEVE---KLFPLFLKAAQLLE 220 (385)
T ss_pred -----HHhc-CCCEEEEC-Cchhhhc-ccc-CCCHHHHHHHcCCCCCCCEEEEECCCCHHHHH---HhHHHHHHHHHHHH
Confidence 0000 12334444 3442211 111 11245567888998887777765 456554 4 78899999999998
Q ss_pred hhcccCCCCCCCEEEEEEeCCCCCchHHHHHHHHHHcCCCCccEEEccccccHHHHHHHcCeeEEcccCCcCCccHHHHH
Q 002535 365 SEVSVENESNSPIKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVK 444 (911)
Q Consensus 365 ~~~p~~~~~~~~vkLvIVGG~~~e~Y~~~Le~la~~lgL~~~~V~flG~v~dV~~~L~~ADVfVlPS~~E~qGFplvLLE 444 (911)
+..|+ ++++++++... ....++++.++++... .|.+++. ++..+|++||++|++| |.+.+|
T Consensus 221 ~~~p~-------~~~vi~~~~~~--~~~~~~~~~~~~~~~~-~v~~~~~--~~~~~l~aADl~V~~S-------Gt~tlE 281 (385)
T TIGR00215 221 QQEPD-------LRRVLPVVNFK--RRLQFEQIKAEYGPDL-QLHLIDG--DARKAMFAADAALLAS-------GTAALE 281 (385)
T ss_pred HhCCC-------eEEEEEeCCch--hHHHHHHHHHHhCCCC-cEEEECc--hHHHHHHhCCEEeecC-------CHHHHH
Confidence 87777 88887763211 1255667777666554 5666543 6778999999999999 345569
Q ss_pred HHHcCCCEEecCC-C----------------ccccccccCccEE-EE-cCCCHHHHHHHHHHHHHcCCCc----HHHHHH
Q 002535 445 ALCFRKPIIAPDL-S----------------NIRKYVDDRVNGY-LF-PKENIKALTHIILQVITNGKIS----PFARNI 501 (911)
Q Consensus 445 AMA~G~PVIaTd~-g----------------Gi~EiV~dg~nGl-Lv-~~~D~eaLAeaI~~LLsd~~~p----~~~~~m 501 (911)
||++|+|+|.... + +++.++.+..-.. +. ..-+++.+++.+.++++| + +.++++
T Consensus 282 a~a~G~P~Vv~yk~~pl~~~~~~~~~~~~~~~~~nil~~~~~~pel~q~~~~~~~l~~~~~~ll~~---~~~~~~~~~~~ 358 (385)
T TIGR00215 282 AALIKTPMVVGYRMKPLTFLIARRLVKTDYISLPNILANRLLVPELLQEECTPHPLAIALLLLLEN---GLKAYKEMHRE 358 (385)
T ss_pred HHHcCCCEEEEEcCCHHHHHHHHHHHcCCeeeccHHhcCCccchhhcCCCCCHHHHHHHHHHHhcC---CcccHHHHHHH
Confidence 9999999888731 1 1223333322111 12 234689999999999999 8 777777
Q ss_pred HHHHHHHHHhc
Q 002535 502 ASIGRRSVKNL 512 (911)
Q Consensus 502 g~~ar~~ae~F 512 (911)
.+.-.+..+..
T Consensus 359 ~~~~~~~~~~l 369 (385)
T TIGR00215 359 RQFFEELRQRI 369 (385)
T ss_pred HHHHHHHHHHh
Confidence 65544444444
No 94
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=4.6e-11 Score=129.51 Aligned_cols=350 Identities=14% Similarity=0.110 Sum_probs=208.0
Q ss_pred CCCCCEEEEEeCCCCCChHHHHHHHHHHHHHHCCCeEEEEEeCCC-cchhhhhhcCceEEEeccchh-------------
Q 002535 141 GYRKPQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDG-RAHEVWRNIGVPVAILQTGRE------------- 206 (911)
Q Consensus 141 ~~rkprIalI~~~L~~GGae~~v~~LAk~L~~~GyeV~V~t~~~g-~~~~~~~~~gi~v~~l~~~~~------------- 206 (911)
+.++.-+++|.++...+. .+-.-|..|++.|++|.++...+. +......+-.+.++.++....
T Consensus 10 ~~k~ra~vvVLGDvGRSP---RMqYHA~Sla~~gf~VdliGy~~s~p~e~l~~hprI~ih~m~~l~~~~~~p~~~~l~lK 86 (444)
T KOG2941|consen 10 SKKKRAIVVVLGDVGRSP---RMQYHALSLAKLGFQVDLIGYVESIPLEELLNHPRIRIHGMPNLPFLQGGPRVLFLPLK 86 (444)
T ss_pred cccceEEEEEecccCCCh---HHHHHHHHHHHcCCeEEEEEecCCCChHHHhcCCceEEEeCCCCcccCCCchhhhhHHH
Confidence 344555677778765443 345567788899999999988664 555555555666555433211
Q ss_pred --------HHHhhhhcCccEEEEcCcchhHH-HHHHhhCCCCCCCEEEEEcCchh-----------------hHHHHHHH
Q 002535 207 --------KASFVNWLNYDGILVNSLEAKVV-ISNIMQEPFKSLPLVWTIHEGTL-----------------ATRARNYA 260 (911)
Q Consensus 207 --------l~~lI~~~kpDIIhvhs~~~~~~-ia~L~~~~~~giPvV~tiH~~~L-----------------~~~l~k~~ 260 (911)
+..+.-...+|+|.++++...+. +.+.+.....+.+.|+..|+... .+.++++.
T Consensus 87 vf~Qfl~Ll~aL~~~~~~~~ilvQNPP~iPtliv~~~~~~l~~~KfiIDWHNy~Ysl~l~~~~g~~h~lV~l~~~~E~~f 166 (444)
T KOG2941|consen 87 VFWQFLSLLWALFVLRPPDIILVQNPPSIPTLIVCVLYSILTGAKFIIDWHNYGYSLQLKLKLGFQHPLVRLVRWLEKYF 166 (444)
T ss_pred HHHHHHHHHHHHHhccCCcEEEEeCCCCCchHHHHHHHHHHhcceEEEEehhhHHHHHHHhhcCCCCchHHHHHHHHHHh
Confidence 01112236899999999877443 33333334778999999997211 12234444
Q ss_pred hhcchhhHhhHHHHH---------hhcceEEecCCccccccccCCCCCEE--EeCCCCCCcccccccCchh----hHHHH
Q 002535 261 SSGQLELLNDWKKVF---------NRATVVVFPDYVLPMMYSAFDAGNYY--VIPGSPAKAWEADTNMDLY----NDTVR 325 (911)
Q Consensus 261 ~~~~d~lIs~~~~~~---------~~a~~vvfpn~~l~ii~~~id~~ki~--VIpg~gVD~~~f~~~~~~~----k~~lR 325 (911)
.+.++.-.+..+..- .++. +++..... ...+.+..+ +.+ .+-|...|..-.+.. ...+-
T Consensus 167 gk~a~~nLcVT~AMr~dL~qnWgi~ra~-v~YDrPps----~~~~l~~~H~lf~~-l~~d~~~f~ar~~q~~~~~~taf~ 240 (444)
T KOG2941|consen 167 GKLADYNLCVTKAMREDLIQNWGINRAK-VLYDRPPS----KPTPLDEQHELFMK-LAGDHSPFRAREPQDKALERTAFT 240 (444)
T ss_pred hcccccchhhHHHHHHHHHHhcCCceeE-EEecCCCC----CCCchhHHHHHHhh-hccccchhhhcccccchhhhhhHh
Confidence 444443222222221 0111 11100000 000000000 000 000100000000000 11111
Q ss_pred HhhC-----CCCCCeEEEEEEeccccccccccHHHHHHHHHHhhhhcccCCCCCCCEEEEEEe-CCCCCchHHHHHHHHH
Q 002535 326 VKMG-----FKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILS-GDSTSNYSVVIEAIAH 399 (911)
Q Consensus 326 ~~lg-----i~~d~~vIL~VGsrl~~~KGiKg~dlLLeAl~~L~~~~p~~~~~~~~vkLvIVG-G~~~e~Y~~~Le~la~ 399 (911)
++.. ..++.+.++.......++ .++.+|++|+....++..+.....+++-++|.| |+..+ .+.+.++
T Consensus 241 ~k~~s~~v~~~~~~pallvsSTswTpD---Edf~ILL~AL~~y~~~~~~~~~~lP~llciITGKGPlkE----~Y~~~I~ 313 (444)
T KOG2941|consen 241 KKDASGDVQLLPERPALLVSSTSWTPD---EDFGILLEALVIYEEQLYDKTHNLPSLLCIITGKGPLKE----KYSQEIH 313 (444)
T ss_pred hhcccchhhhccCCCeEEEecCCCCCc---ccHHHHHHHHHhhhhhhhhccCCCCcEEEEEcCCCchhH----HHHHHHH
Confidence 2211 123334455555577777 899999999986644433323445668999999 99984 4457788
Q ss_pred HcCCCCccEEEc-ccc--ccHHHHHHHcCeeEEc--ccCCcCCccHHHHHHHHcCCCEEecCCCccccccccCccEEEEc
Q 002535 400 NLHYPLGVVKHM-AAE--GDVDSVLNTADVVIYG--SFLEEQTFPEILVKALCFRKPIIAPDLSNIRKYVDDRVNGYLFP 474 (911)
Q Consensus 400 ~lgL~~~~V~fl-G~v--~dV~~~L~~ADVfVlP--S~~E~qGFplvLLEAMA~G~PVIaTd~gGi~EiV~dg~nGlLv~ 474 (911)
++++.+ |.+. .+. +|.+.+++.||+.|+- |..-- -.|++++.-..||+||+|-+...+.|+|.|++||++|.
T Consensus 314 ~~~~~~--v~~~tpWL~aEDYP~ll~saDlGVcLHtSSSGL-DLPMKVVDMFGcglPvcA~~fkcl~ELVkh~eNGlvF~ 390 (444)
T KOG2941|consen 314 EKNLQH--VQVCTPWLEAEDYPKLLASADLGVCLHTSSSGL-DLPMKVVDMFGCGLPVCAVNFKCLDELVKHGENGLVFE 390 (444)
T ss_pred Hhcccc--eeeeecccccccchhHhhccccceEeeecCccc-CcchhHHHhhcCCCceeeecchhHHHHHhcCCCceEec
Confidence 888886 4443 333 8999999999987753 32111 27999999999999999999999999999999999997
Q ss_pred CCCHHHHHHHHHHHHH----cCCCcHHHHHHHHHHHHHHHhcCHH
Q 002535 475 KENIKALTHIILQVIT----NGKISPFARNIASIGRRSVKNLMAL 515 (911)
Q Consensus 475 ~~D~eaLAeaI~~LLs----d~~~p~~~~~mg~~ar~~ae~Fs~e 515 (911)
|.++|++.+..+.+ + .....++.++.++.. ...|+
T Consensus 391 --Ds~eLa~ql~~lf~~fp~~---a~~l~~lkkn~~e~~-e~RW~ 429 (444)
T KOG2941|consen 391 --DSEELAEQLQMLFKNFPDN---ADELNQLKKNLREEQ-ELRWD 429 (444)
T ss_pred --cHHHHHHHHHHHHhcCCCC---HHHHHHHHHhhHHHH-hhhHH
Confidence 89999999999998 5 666777877777764 34343
No 95
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=99.41 E-value=4.1e-11 Score=135.34 Aligned_cols=317 Identities=17% Similarity=0.191 Sum_probs=190.0
Q ss_pred EEeCCCCCChHHHHHHHHHHHHHHCCCe-EEEEEeCCCcchhhhhhcCceEEEeccc---------------------hh
Q 002535 149 LVFPDLLIDPQQLQMVTIAIALREIGYA-IQVYSLEDGRAHEVWRNIGVPVAILQTG---------------------RE 206 (911)
Q Consensus 149 lI~~~L~~GGae~~v~~LAk~L~~~Gye-V~V~t~~~g~~~~~~~~~gi~v~~l~~~---------------------~~ 206 (911)
+++.....||.-.....+++.|.++|++ |.++...++-........++++..++.. ..
T Consensus 3 ivl~~gGTGGHv~pAlAl~~~l~~~g~~~v~~~~~~~~~e~~l~~~~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (357)
T COG0707 3 IVLTAGGTGGHVFPALALAEELAKRGWEQVIVLGTGDGLEAFLVKQYGIEFELIPSGGLRRKGSLKLLKAPFKLLKGVLQ 82 (357)
T ss_pred EEEEeCCCccchhHHHHHHHHHHhhCccEEEEecccccceeeeccccCceEEEEecccccccCcHHHHHHHHHHHHHHHH
Confidence 3445556788888899999999999995 5555333322222223334444333221 12
Q ss_pred HHHhhhhcCccEEEEcCcchhHHHHHHhhCCCCCCCEEEEEcCchhhHHHHHHHhhcchhhHhhHHHHHhhcceEEecCC
Q 002535 207 KASFVNWLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRATVVVFPDY 286 (911)
Q Consensus 207 l~~lI~~~kpDIIhvhs~~~~~~ia~L~~~~~~giPvV~tiH~~~L~~~l~k~~~~~~d~lIs~~~~~~~~a~~vvfpn~ 286 (911)
...+++..+||+|+..+.+.. ....++. ...++|++.+..+... ....++..+.++.+...+..
T Consensus 83 a~~il~~~kPd~vig~Ggyvs-~P~~~Aa-~~~~iPv~ihEqn~~~-G~ank~~~~~a~~V~~~f~~------------- 146 (357)
T COG0707 83 ARKILKKLKPDVVIGTGGYVS-GPVGIAA-KLLGIPVIIHEQNAVP-GLANKILSKFAKKVASAFPK------------- 146 (357)
T ss_pred HHHHHHHcCCCEEEecCCccc-cHHHHHH-HhCCCCEEEEecCCCc-chhHHHhHHhhceeeecccc-------------
Confidence 344577899999999777662 3333333 3667998865553221 22233333333332111110
Q ss_pred ccccccccCCCCCEEEeCCCCCCcccccccCchhhHHHHHhhCCCCCCeEEEEEEeccccccccccH-HHHHHHHHHhhh
Q 002535 287 VLPMMYSAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEH-ALILRALLPLFS 365 (911)
Q Consensus 287 ~l~ii~~~id~~ki~VIpg~gVD~~~f~~~~~~~k~~lR~~lgi~~d~~vIL~VGsrl~~~KGiKg~-dlLLeAl~~L~~ 365 (911)
....++.++..+. |+|+...... .+. ...+.. + ..+.++|+++|+.... +.+ +.+.+++..+.+
T Consensus 147 ----~~~~~~~~~~~~t-G~Pvr~~~~~-~~~---~~~~~~-~-~~~~~~ilV~GGS~Ga----~~ln~~v~~~~~~l~~ 211 (357)
T COG0707 147 ----LEAGVKPENVVVT-GIPVRPEFEE-LPA---AEVRKD-G-RLDKKTILVTGGSQGA----KALNDLVPEALAKLAN 211 (357)
T ss_pred ----ccccCCCCceEEe-cCcccHHhhc-cch---hhhhhh-c-cCCCcEEEEECCcchh----HHHHHHHHHHHHHhhh
Confidence 1123333444444 4577663322 111 111221 1 1267789999876666 334 333344444443
Q ss_pred hcccCCCCCCCEEEEEEeCCCCCchHHHHHHHHHHcCCCCccEEEccccccHHHHHHHcCeeEEcccCCcCCccHHHHHH
Q 002535 366 EVSVENESNSPIKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKA 445 (911)
Q Consensus 366 ~~p~~~~~~~~vkLvIVGG~~~e~Y~~~Le~la~~lgL~~~~V~flG~v~dV~~~L~~ADVfVlPS~~E~qGFplvLLEA 445 (911)
+ ++++..+|+.. +++....++-.+ .+...++.+|+..+|++||++|.-+ + ++++.|+
T Consensus 212 ---~-------~~v~~~~G~~~------~~~~~~~~~~~~-~~~v~~f~~dm~~~~~~ADLvIsRa---G---a~Ti~E~ 268 (357)
T COG0707 212 ---R-------IQVIHQTGKND------LEELKSAYNELG-VVRVLPFIDDMAALLAAADLVISRA---G---ALTIAEL 268 (357)
T ss_pred ---C-------eEEEEEcCcch------HHHHHHHHhhcC-cEEEeeHHhhHHHHHHhccEEEeCC---c---ccHHHHH
Confidence 2 77877777642 223333222222 1888899999999999999999776 2 7899999
Q ss_pred HHcCCCEEecCCCcc--------ccccccCccEEEEcCCC--HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhcCHH
Q 002535 446 LCFRKPIIAPDLSNI--------RKYVDDRVNGYLFPKEN--IKALTHIILQVITNGKISPFARNIASIGRRSVKNLMAL 515 (911)
Q Consensus 446 MA~G~PVIaTd~gGi--------~EiV~dg~nGlLv~~~D--~eaLAeaI~~LLsd~~~p~~~~~mg~~ar~~ae~Fs~e 515 (911)
.++|+|+|--+.+.. ...+.+...|.+++..+ ++.+++.|.+++++ ++..++|++++++....-..+
T Consensus 269 ~a~g~P~IliP~p~~~~~~Q~~NA~~l~~~gaa~~i~~~~lt~~~l~~~i~~l~~~---~~~l~~m~~~a~~~~~p~aa~ 345 (357)
T COG0707 269 LALGVPAILVPYPPGADGHQEYNAKFLEKAGAALVIRQSELTPEKLAELILRLLSN---PEKLKAMAENAKKLGKPDAAE 345 (357)
T ss_pred HHhCCCEEEeCCCCCccchHHHHHHHHHhCCCEEEeccccCCHHHHHHHHHHHhcC---HHHHHHHHHHHHhcCCCCHHH
Confidence 999999887554432 33445555678877655 89999999999999 999999999988877555555
Q ss_pred HHHHHHH
Q 002535 516 ETIEGYA 522 (911)
Q Consensus 516 ~ia~~y~ 522 (911)
.+++...
T Consensus 346 ~i~~~~~ 352 (357)
T COG0707 346 RIADLLL 352 (357)
T ss_pred HHHHHHH
Confidence 5555443
No 96
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=99.34 E-value=2.3e-10 Score=129.57 Aligned_cols=292 Identities=15% Similarity=0.142 Sum_probs=174.7
Q ss_pred EEeCCCCCChHHHHHHHHHHHHHHCCCeEEEEEeCCCcchhhhhhcCceEEEecc---ch------------------hH
Q 002535 149 LVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQT---GR------------------EK 207 (911)
Q Consensus 149 lI~~~L~~GGae~~v~~LAk~L~~~GyeV~V~t~~~g~~~~~~~~~gi~v~~l~~---~~------------------~l 207 (911)
+++.....||--.-.+.+++.|++.||+|.+++...+-........++++..++. .+ +.
T Consensus 4 i~~~~GGTGGHi~Pala~a~~l~~~g~~v~~vg~~~~~e~~l~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 83 (352)
T PRK12446 4 IVFTGGGSAGHVTPNLAIIPYLKEDNWDISYIGSHQGIEKTIIEKENIPYYSISSGKLRRYFDLKNIKDPFLVMKGVMDA 83 (352)
T ss_pred EEEEcCCcHHHHHHHHHHHHHHHhCCCEEEEEECCCccccccCcccCCcEEEEeccCcCCCchHHHHHHHHHHHHHHHHH
Confidence 4556667888888999999999999999999986665433333344555443321 11 12
Q ss_pred HHhhhhcCccEEEEcCcchhHHHHHHhhCCCCCCCEEEEEcCchhhHHHHHHHhhcchhhHhhHHHHHhhcceEEecCCc
Q 002535 208 ASFVNWLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRATVVVFPDYV 287 (911)
Q Consensus 208 ~~lI~~~kpDIIhvhs~~~~~~ia~L~~~~~~giPvV~tiH~~~L~~~l~k~~~~~~d~lIs~~~~~~~~a~~vvfpn~~ 287 (911)
.++++..+||+||.+..... +...++.+ ..++|+++.-.+ .......+...++++.+...+ +.
T Consensus 84 ~~i~~~~kPdvvi~~Ggy~s-~p~~~aa~-~~~~p~~i~e~n-~~~g~~nr~~~~~a~~v~~~f------------~~-- 146 (352)
T PRK12446 84 YVRIRKLKPDVIFSKGGFVS-VPVVIGGW-LNRVPVLLHESD-MTPGLANKIALRFASKIFVTF------------EE-- 146 (352)
T ss_pred HHHHHhcCCCEEEecCchhh-HHHHHHHH-HcCCCEEEECCC-CCccHHHHHHHHhhCEEEEEc------------cc--
Confidence 23467789999999886662 33444433 677898754332 222222333333333322111 10
Q ss_pred cccccccCCCCCEEEeCCCCCCcccccccCchhhHHHHHhhCCCCCCeEEEEEEeccccccccccH-HHHHHHHHHhhhh
Q 002535 288 LPMMYSAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEH-ALILRALLPLFSE 366 (911)
Q Consensus 288 l~ii~~~id~~ki~VIpg~gVD~~~f~~~~~~~k~~lR~~lgi~~d~~vIL~VGsrl~~~KGiKg~-dlLLeAl~~L~~~ 366 (911)
....++.+++.++ |+|+.... . ...+...++.+++++++++|+.+|+.... +.+ +.+.+++..+..
T Consensus 147 ---~~~~~~~~k~~~t-G~Pvr~~~---~-~~~~~~~~~~~~l~~~~~~iLv~GGS~Ga----~~in~~~~~~l~~l~~- 213 (352)
T PRK12446 147 ---AAKHLPKEKVIYT-GSPVREEV---L-KGNREKGLAFLGFSRKKPVITIMGGSLGA----KKINETVREALPELLL- 213 (352)
T ss_pred ---hhhhCCCCCeEEE-CCcCCccc---c-cccchHHHHhcCCCCCCcEEEEECCccch----HHHHHHHHHHHHhhcc-
Confidence 1122334455443 56776522 1 11234556678888888899999866555 445 233334444422
Q ss_pred cccCCCCCCCEEEEEEeCCCCCchHHHHHHHHHHcCCCCccEEEcccc-ccHHHHHHHcCeeEEcccCCcCCccHHHHHH
Q 002535 367 VSVENESNSPIKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAE-GDVDSVLNTADVVIYGSFLEEQTFPEILVKA 445 (911)
Q Consensus 367 ~p~~~~~~~~vkLvIVGG~~~e~Y~~~Le~la~~lgL~~~~V~flG~v-~dV~~~L~~ADVfVlPS~~E~qGFplvLLEA 445 (911)
+ ++++++.|... +. +.... .. ++...++. +++.++|+.||++|.-+ -+.++.|+
T Consensus 214 --~-------~~vv~~~G~~~--~~----~~~~~--~~--~~~~~~f~~~~m~~~~~~adlvIsr~------G~~t~~E~ 268 (352)
T PRK12446 214 --K-------YQIVHLCGKGN--LD----DSLQN--KE--GYRQFEYVHGELPDILAITDFVISRA------GSNAIFEF 268 (352)
T ss_pred --C-------cEEEEEeCCch--HH----HHHhh--cC--CcEEecchhhhHHHHHHhCCEEEECC------ChhHHHHH
Confidence 1 66666656431 11 21221 12 34556887 78999999999999765 37899999
Q ss_pred HHcCCCEEecCCC-----c----cccccccCccEEEEcC--CCHHHHHHHHHHHHHcCCCcHHH
Q 002535 446 LCFRKPIIAPDLS-----N----IRKYVDDRVNGYLFPK--ENIKALTHIILQVITNGKISPFA 498 (911)
Q Consensus 446 MA~G~PVIaTd~g-----G----i~EiV~dg~nGlLv~~--~D~eaLAeaI~~LLsd~~~p~~~ 498 (911)
+++|+|.|.-... + ..+.+.+...|..+.. -+++.+++++.++++| ++.+
T Consensus 269 ~~~g~P~I~iP~~~~~~~~~Q~~Na~~l~~~g~~~~l~~~~~~~~~l~~~l~~ll~~---~~~~ 329 (352)
T PRK12446 269 LTLQKPMLLIPLSKFASRGDQILNAESFERQGYASVLYEEDVTVNSLIKHVEELSHN---NEKY 329 (352)
T ss_pred HHcCCCEEEEcCCCCCCCchHHHHHHHHHHCCCEEEcchhcCCHHHHHHHHHHHHcC---HHHH
Confidence 9999999887543 1 1234444444656543 3578999999999988 6554
No 97
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=99.16 E-value=1.3e-10 Score=105.67 Aligned_cols=90 Identities=19% Similarity=0.177 Sum_probs=82.9
Q ss_pred eeEEcccCCcCCccHHHHHHHHcCCCEEecCCCccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 002535 426 VVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIG 505 (911)
Q Consensus 426 VfVlPS~~E~qGFplvLLEAMA~G~PVIaTd~gGi~EiV~dg~nGlLv~~~D~eaLAeaI~~LLsd~~~p~~~~~mg~~a 505 (911)
+++.|+... |++..++|+||||+|||+++.+++.+++.++.+++.++ |+++++++|..+++| |+.+++++++|
T Consensus 1 i~Ln~~~~~--~~~~r~~E~~a~G~~vi~~~~~~~~~~~~~~~~~~~~~--~~~el~~~i~~ll~~---~~~~~~ia~~a 73 (92)
T PF13524_consen 1 INLNPSRSD--GPNMRIFEAMACGTPVISDDSPGLREIFEDGEHIITYN--DPEELAEKIEYLLEN---PEERRRIAKNA 73 (92)
T ss_pred CEeeCCCCC--CCchHHHHHHHCCCeEEECChHHHHHHcCCCCeEEEEC--CHHHHHHHHHHHHCC---HHHHHHHHHHH
Confidence 356787776 79999999999999999999999999999998899988 999999999999999 99999999999
Q ss_pred HHHH-HhcCHHHHHHHHH
Q 002535 506 RRSV-KNLMALETIEGYA 522 (911)
Q Consensus 506 r~~a-e~Fs~e~ia~~y~ 522 (911)
++.+ ++|++++.++++.
T Consensus 74 ~~~v~~~~t~~~~~~~il 91 (92)
T PF13524_consen 74 RERVLKRHTWEHRAEQIL 91 (92)
T ss_pred HHHHHHhCCHHHHHHHHH
Confidence 9999 5799999998875
No 98
>PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3. Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P) [].; GO: 0004373 glycogen (starch) synthase activity, 0005978 glycogen biosynthetic process; PDB: 3NB0_C 3RT1_C 3RSZ_D 3O3C_B 3NAZ_B 3NCH_D.
Probab=99.07 E-value=4.7e-09 Score=122.73 Aligned_cols=111 Identities=14% Similarity=0.132 Sum_probs=78.6
Q ss_pred cHHHHHHHcCeeEEcccCCcCCccHHHHHHHHcCCCEEecCCCccccccc-----cCccEEEEcC---CC----HHHHHH
Q 002535 416 DVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSNIRKYVD-----DRVNGYLFPK---EN----IKALTH 483 (911)
Q Consensus 416 dV~~~L~~ADVfVlPS~~E~qGFplvLLEAMA~G~PVIaTd~gGi~EiV~-----dg~nGlLv~~---~D----~eaLAe 483 (911)
+..+++..||+.|+||++|+ +|.+.+|+.++|+|.|+|+..|....+. +...|+.|-. .+ ++++++
T Consensus 462 ~Y~dfv~GcdLgvFPSYYEP--WGYTPlE~~a~gVPsITTnLsGFG~~~~~~~~~~~~~GV~VvdR~~~n~~e~v~~la~ 539 (633)
T PF05693_consen 462 DYYDFVRGCDLGVFPSYYEP--WGYTPLECTAFGVPSITTNLSGFGCWMQEHIEDPEEYGVYVVDRRDKNYDESVNQLAD 539 (633)
T ss_dssp -HHHHHHHSSEEEE--SSBS--S-HHHHHHHHTT--EEEETTBHHHHHHHTTS-HHGGGTEEEE-SSSS-HHHHHHHHHH
T ss_pred CHHHHhccCceeeecccccc--ccCChHHHhhcCCceeeccchhHHHHHHHhhccCcCCcEEEEeCCCCCHHHHHHHHHH
Confidence 57899999999999999997 9999999999999999999998764432 2345654432 23 455666
Q ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhc
Q 002535 484 IILQVITNGKISPFARNIASIGRRSVKNLMALETIEGYAMLLENVLK 530 (911)
Q Consensus 484 aI~~LLsd~~~p~~~~~mg~~ar~~ae~Fs~e~ia~~y~~Lye~vL~ 530 (911)
.|.++... -...+..+..++.+.++..+|++....|.+.|+-+|+
T Consensus 540 ~l~~f~~~--~~rqri~~Rn~ae~LS~~~dW~~~~~yY~~Ay~~AL~ 584 (633)
T PF05693_consen 540 FLYKFCQL--SRRQRIIQRNRAERLSDLADWKNFGKYYEKAYDLALR 584 (633)
T ss_dssp HHHHHHT----HHHHHHHHHHHHHHGGGGBHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHhC--CHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 66666654 0334446777787777889999999999999988775
No 99
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=98.99 E-value=5.1e-09 Score=121.49 Aligned_cols=133 Identities=10% Similarity=0.131 Sum_probs=109.1
Q ss_pred HHHHHHHHHhhhhcccCCCCCCCEEEEEEe-CCCCCchHHHHHHHHHHcCCCCccEEEccccc-cHHHHHHHcCeeEEcc
Q 002535 354 ALILRALLPLFSEVSVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEG-DVDSVLNTADVVIYGS 431 (911)
Q Consensus 354 dlLLeAl~~L~~~~p~~~~~~~~vkLvIVG-G~~~e~Y~~~Le~la~~lgL~~~~V~flG~v~-dV~~~L~~ADVfVlPS 431 (911)
+..|+++..|.++.|+ ++|.| | +.+-+ ..|.++ .++ ++ .+.+.|+.. ++.++|..||+++..|
T Consensus 291 s~~I~~i~~Lv~~lPd-------~~f~I-ga~te~s---~kL~~L-~~y--~n-vvly~~~~~~~l~~ly~~~dlyLdin 355 (438)
T TIGR02919 291 SDQIEHLEEIVQALPD-------YHFHI-AALTEMS---SKLMSL-DKY--DN-VKLYPNITTQKIQELYQTCDIYLDIN 355 (438)
T ss_pred HHHHHHHHHHHHhCCC-------cEEEE-EecCccc---HHHHHH-Hhc--CC-cEEECCcChHHHHHHHHhccEEEEcc
Confidence 4459999999999998 99999 7 65421 677777 544 66 788888775 9999999999999999
Q ss_pred cCCcCCccHHHHHHHHcCCCEEecCCC-ccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH
Q 002535 432 FLEEQTFPEILVKALCFRKPIIAPDLS-NIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSV 509 (911)
Q Consensus 432 ~~E~qGFplvLLEAMA~G~PVIaTd~g-Gi~EiV~dg~nGlLv~~~D~eaLAeaI~~LLsd~~~p~~~~~mg~~ar~~a 509 (911)
..| |+++++.||++.|+|||+.+.. |..+++.+ |.+++.+++++|+++|.+++++ ++..++.-..-++.+
T Consensus 356 ~~e--~~~~al~eA~~~G~pI~afd~t~~~~~~i~~---g~l~~~~~~~~m~~~i~~lL~d---~~~~~~~~~~q~~~a 426 (438)
T TIGR02919 356 HGN--EILNAVRRAFEYNLLILGFEETAHNRDFIAS---ENIFEHNEVDQLISKLKDLLND---PNQFRELLEQQREHA 426 (438)
T ss_pred ccc--cHHHHHHHHHHcCCcEEEEecccCCcccccC---CceecCCCHHHHHHHHHHHhcC---HHHHHHHHHHHHHHh
Confidence 998 6999999999999999998865 45577766 8899999999999999999999 866665433334444
No 100
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=98.98 E-value=2.9e-07 Score=104.06 Aligned_cols=320 Identities=14% Similarity=0.113 Sum_probs=188.6
Q ss_pred hHHHHHHHHHHHHHHC--CCeEEEEEeCCCcchhhhhhcC--ceEEEeccc--hhHHHhhhhcCccEEEEcCcchhHHHH
Q 002535 158 PQQLQMVTIAIALREI--GYAIQVYSLEDGRAHEVWRNIG--VPVAILQTG--REKASFVNWLNYDGILVNSLEAKVVIS 231 (911)
Q Consensus 158 Gae~~v~~LAk~L~~~--GyeV~V~t~~~g~~~~~~~~~g--i~v~~l~~~--~~l~~lI~~~kpDIIhvhs~~~~~~ia 231 (911)
|-...+.-|.+.|.+. +..+.+-+..+......-+..+ +....++.. ....++++..+||++++......+.+.
T Consensus 60 GEv~a~~pLv~~l~~~~P~~~ilvTt~T~Tg~e~a~~~~~~~v~h~YlP~D~~~~v~rFl~~~~P~l~Ii~EtElWPnli 139 (419)
T COG1519 60 GEVLAALPLVRALRERFPDLRILVTTMTPTGAERAAALFGDSVIHQYLPLDLPIAVRRFLRKWRPKLLIIMETELWPNLI 139 (419)
T ss_pred hHHHHHHHHHHHHHHhCCCCCEEEEecCccHHHHHHHHcCCCeEEEecCcCchHHHHHHHHhcCCCEEEEEeccccHHHH
Confidence 5556677788888877 5555555433322111111222 334444433 346778889999998877655533333
Q ss_pred HHhhCCCCCCCEEEEEcCchhhHHHHHHHhhcchhhHhhHHHHHhhcceEEecCCccccccccCCCCCEEEeCCCCCCcc
Q 002535 232 NIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRATVVVFPDYVLPMMYSAFDAGNYYVIPGSPAKAW 311 (911)
Q Consensus 232 ~L~~~~~~giPvV~tiH~~~L~~~l~k~~~~~~d~lIs~~~~~~~~a~~vvfpn~~l~ii~~~id~~ki~VIpg~gVD~~ 311 (911)
.-+ +..++|++. +.+ -+.. ...+....+-...+..++..+.+..++.....-...+...++.+.-|.-.|..
T Consensus 140 ~e~--~~~~~p~~L-vNa-RLS~----rS~~~y~k~~~~~~~~~~~i~li~aQse~D~~Rf~~LGa~~v~v~GNlKfd~~ 211 (419)
T COG1519 140 NEL--KRRGIPLVL-VNA-RLSD----RSFARYAKLKFLARLLFKNIDLILAQSEEDAQRFRSLGAKPVVVTGNLKFDIE 211 (419)
T ss_pred HHH--HHcCCCEEE-Eee-eech----hhhHHHHHHHHHHHHHHHhcceeeecCHHHHHHHHhcCCcceEEecceeecCC
Confidence 323 246788764 222 1111 11111111122233444555555555444332233333334333333333331
Q ss_pred cccccCchhhHHHHHhhCCCCCCeEEEEEEeccccccccccHHHHHHHHHHhhhhcccCCCCCCCEEEEEEe-CCCCCch
Q 002535 312 EADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILS-GDSTSNY 390 (911)
Q Consensus 312 ~f~~~~~~~k~~lR~~lgi~~d~~vIL~VGsrl~~~KGiKg~dlLLeAl~~L~~~~p~~~~~~~~vkLvIVG-G~~~e~Y 390 (911)
. .+........+|..++.. .++++..++ .. ..-+.++++...|++++|+ ..+++|= -+++
T Consensus 212 ~-~~~~~~~~~~~r~~l~~~--r~v~iaaST--H~----GEeei~l~~~~~l~~~~~~-------~llIlVPRHpER--- 272 (419)
T COG1519 212 P-PPQLAAELAALRRQLGGH--RPVWVAAST--HE----GEEEIILDAHQALKKQFPN-------LLLILVPRHPER--- 272 (419)
T ss_pred C-ChhhHHHHHHHHHhcCCC--CceEEEecC--CC----chHHHHHHHHHHHHhhCCC-------ceEEEecCChhh---
Confidence 1 111122245667666644 445555553 33 5567789999999999998 8888887 5544
Q ss_pred HHHHHHHHHHcCCCC------------ccEEEccccccHHHHHHHcCeeEEc-ccCCcCCccHHHHHHHHcCCCEEecCC
Q 002535 391 SVVIEAIAHNLHYPL------------GVVKHMAAEGDVDSVLNTADVVIYG-SFLEEQTFPEILVKALCFRKPIIAPDL 457 (911)
Q Consensus 391 ~~~Le~la~~lgL~~------------~~V~flG~v~dV~~~L~~ADVfVlP-S~~E~qGFplvLLEAMA~G~PVIaTd~ 457 (911)
-+.+++++++.|++- ..|.......++..+|..||+.+.. |..+. -|--++|+.++|+|||.-..
T Consensus 273 f~~v~~l~~~~gl~~~~rS~~~~~~~~tdV~l~DtmGEL~l~y~~adiAFVGGSlv~~--GGHN~LEpa~~~~pvi~Gp~ 350 (419)
T COG1519 273 FKAVENLLKRKGLSVTRRSQGDPPFSDTDVLLGDTMGELGLLYGIADIAFVGGSLVPI--GGHNPLEPAAFGTPVIFGPY 350 (419)
T ss_pred HHHHHHHHHHcCCeEEeecCCCCCCCCCcEEEEecHhHHHHHHhhccEEEECCcccCC--CCCChhhHHHcCCCEEeCCc
Confidence 378888898887742 0232222336789999999997775 44442 37889999999999998542
Q ss_pred ----CccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHh
Q 002535 458 ----SNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSVKN 511 (911)
Q Consensus 458 ----gGi~EiV~dg~nGlLv~~~D~eaLAeaI~~LLsd~~~p~~~~~mg~~ar~~ae~ 511 (911)
..+.+.+...+.|+.|+ |.+.+++++..+++| ++.+.+|++++...+++
T Consensus 351 ~~Nf~ei~~~l~~~ga~~~v~--~~~~l~~~v~~l~~~---~~~r~~~~~~~~~~v~~ 403 (419)
T COG1519 351 TFNFSDIAERLLQAGAGLQVE--DADLLAKAVELLLAD---EDKREAYGRAGLEFLAQ 403 (419)
T ss_pred cccHHHHHHHHHhcCCeEEEC--CHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHH
Confidence 33344444444577776 589999999999999 89999999999998844
No 101
>PRK10117 trehalose-6-phosphate synthase; Provisional
Probab=98.94 E-value=7.9e-08 Score=111.78 Aligned_cols=290 Identities=9% Similarity=0.007 Sum_probs=184.6
Q ss_pred CccEEEEcCcchhHHHHHHhhCCCCCCCEEEEEcCchhhHHHHHHHhhcchhhHhhHHHHHhhcceEEecCCc-------
Q 002535 215 NYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRATVVVFPDYV------- 287 (911)
Q Consensus 215 kpDIIhvhs~~~~~~ia~L~~~~~~giPvV~tiH~~~L~~~l~k~~~~~~d~lIs~~~~~~~~a~~vvfpn~~------- 287 (911)
.-|+|.+|..... .++.++.+.....++-+..|..-....+-+.+. ....++ ..+-.++.+.|....
T Consensus 123 ~~D~VWVHDYhL~-llp~~LR~~~~~~~IgFFlHiPFPs~eifr~LP-~r~eil----~glL~aDlIGFqt~~y~rnFl~ 196 (474)
T PRK10117 123 DDDIIWIHDYHLL-PFASELRKRGVNNRIGFFLHIPFPTPEIFNALP-PHDELL----EQLCDYDLLGFQTENDRLAFLD 196 (474)
T ss_pred CCCEEEEeccHhh-HHHHHHHHhCCCCcEEEEEeCCCCChHHHhhCC-ChHHHH----HHHHhCccceeCCHHHHHHHHH
Confidence 3489999998884 677777666777899999997211100000000 000000 001111111111111
Q ss_pred -------------cccccccCCCCCEEEeCCCCCCcccccccCch----hhHHHHHhhCCCCCCeEEEEEEecccccccc
Q 002535 288 -------------LPMMYSAFDAGNYYVIPGSPAKAWEADTNMDL----YNDTVRVKMGFKPDDLVIAIVGTQFMYRGLW 350 (911)
Q Consensus 288 -------------l~ii~~~id~~ki~VIpg~gVD~~~f~~~~~~----~k~~lR~~lgi~~d~~vIL~VGsrl~~~KGi 350 (911)
..+.+.+ ..-++.+.| .|||+..|...... ....++++++ +..+|+.|. ++.+.
T Consensus 197 ~~~~~lg~~~~~~~~v~~~g-r~v~v~~~P-igID~~~~~~~a~~~~~~~~~~lr~~~~---~~~lilgVD-RLDyt--- 267 (474)
T PRK10117 197 CLSNLTRVTTRSGKSHTAWG-KAFRTEVYP-IGIEPDEIAKQAAGPLPPKLAQLKAELK---NVQNIFSVE-RLDYS--- 267 (474)
T ss_pred HHHHHcCCcccCCCeEEECC-eEEEEEEEE-CeEcHHHHHHHhhchHHHHHHHHHHHcC---CCeEEEEec-ccccc---
Confidence 0000100 011244455 78898665432211 1234555554 455777777 88887
Q ss_pred ccHHHHHHHHHHhhhhcccCCCCCCCEEEEEEeCCCC---C---chHHHHHHHHHHcCCCCc-----cEEEccc---ccc
Q 002535 351 LEHALILRALLPLFSEVSVENESNSPIKVMILSGDST---S---NYSVVIEAIAHNLHYPLG-----VVKHMAA---EGD 416 (911)
Q Consensus 351 Kg~dlLLeAl~~L~~~~p~~~~~~~~vkLvIVGG~~~---e---~Y~~~Le~la~~lgL~~~-----~V~flG~---v~d 416 (911)
||+..=++|+..+.+++|+ -..++.|+-+.-+.+ + .+..++++++.+.+-.-+ -|.++.. .++
T Consensus 268 KGi~~rl~Afe~fL~~~Pe---~~gkvvlvQia~psR~~v~~Y~~l~~~v~~~vg~INg~fg~~~w~Pv~y~~~~~~~~~ 344 (474)
T PRK10117 268 KGLPERFLAYEALLEKYPQ---HHGKIRYTQIAPTSRGDVQAYQDIRHQLETEAGRINGKYGQLGWTPLYYLNQHFDRKL 344 (474)
T ss_pred cCHHHHHHHHHHHHHhChh---hcCCEEEEEEcCCCCCccHHHHHHHHHHHHHHHHHHhccCCCCceeEEEecCCCCHHH
Confidence 8888889999999999997 344577887773222 2 345556665554322111 2444432 277
Q ss_pred HHHHHHHcCeeEEcccCCcCCccHHHHHHHHcCC-----CEEecCCCccccccccCccEEEEcCCCHHHHHHHHHHHHHc
Q 002535 417 VDSVLNTADVVIYGSFLEEQTFPEILVKALCFRK-----PIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITN 491 (911)
Q Consensus 417 V~~~L~~ADVfVlPS~~E~qGFplvLLEAMA~G~-----PVIaTd~gGi~EiV~dg~nGlLv~~~D~eaLAeaI~~LLsd 491 (911)
+..+|+.||+++.+|..+ |+-++..|+.||.. ++|.|...|..+.+.+ .++|+|.|++++|++|.+.++.
T Consensus 345 l~alyr~ADv~lVTplRD--GMNLVAkEyva~q~~~~~GvLILSefAGaA~~L~~---AllVNP~d~~~~A~Ai~~AL~M 419 (474)
T PRK10117 345 LMKIFRYSDVGLVTPLRD--GMNLVAKEYVAAQDPANPGVLVLSQFAGAANELTS---ALIVNPYDRDEVAAALDRALTM 419 (474)
T ss_pred HHHHHHhccEEEeccccc--ccccccchheeeecCCCCccEEEecccchHHHhCC---CeEECCCCHHHHHHHHHHHHcC
Confidence 889999999999999999 89999999999976 3788999888888753 8999999999999999999998
Q ss_pred CCCcHH-HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhc
Q 002535 492 GKISPF-ARNIASIGRRSVKNLMALETIEGYAMLLENVLK 530 (911)
Q Consensus 492 ~~~p~~-~~~mg~~ar~~ae~Fs~e~ia~~y~~Lye~vL~ 530 (911)
|.. +++--+.-++.+.+++....++.+.+-++.+..
T Consensus 420 ---p~~Er~~R~~~l~~~v~~~dv~~W~~~fL~~L~~~~~ 456 (474)
T PRK10117 420 ---PLAERISRHAEMLDVIVKNDINHWQECFISDLKQIVP 456 (474)
T ss_pred ---CHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHhhh
Confidence 544 334445566777889999999998887777643
No 102
>PF00982 Glyco_transf_20: Glycosyltransferase family 20; InterPro: IPR001830 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 20 GT20 from CAZY comprises enzymes with only one known activity; alpha, alpha-trehalose-phosphate synthase [UDP-forming] (2.4.1.15 from EC). Synthesis of trehalose in the yeast Saccharomyces cerevisiae is catalysed by the trehalose-6-phosphate (Tre6P) synthase/phosphatase complex, which is composed of at least three different subunits encoded by the genes TPS1, TPS2, and TSL1. Tps1 and Tps2 carry the catalytic activities of trehalose synthesis, namely Tre6P synthase (Tps1) and Tre6P phosphatase (Tps2), while TsI1 has regulatory functions. There is some evidence that TsI1 and Tps3 may share a common function with respect to regulation and/or structural stabilisation of the Tre6P synthase/phosphatase complex in exponentially growing, heat-shocked cells []. OtsA (trehalose-6-phosphate synthase) from Escherichia coli has homology to the full-length TPS1, the N-terminal part of TPS2 and an internal region of TPS3 (TSL1) of yeast [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1UQU_A 2WTX_A 1UQT_B 1GZ5_B.
Probab=98.92 E-value=9.9e-08 Score=111.81 Aligned_cols=289 Identities=12% Similarity=0.107 Sum_probs=159.0
Q ss_pred cCccEEEEcCcchhHHHHHHhhCCCCCCCEEEEEcCchhhHHHHHHHhhcchhhHhhHHHHHhhcceEEecCCc------
Q 002535 214 LNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRATVVVFPDYV------ 287 (911)
Q Consensus 214 ~kpDIIhvhs~~~~~~ia~L~~~~~~giPvV~tiH~~~L~~~l~k~~~~~~d~lIs~~~~~~~~a~~vvfpn~~------ 287 (911)
..-|+|.+|..... .++.++.++..+.++.+..|..-....+-+.+. ....+ -..+-.++.+.|.+..
T Consensus 140 ~~~D~VWVhDYhL~-llP~~LR~~~~~~~IgfFlHiPFPs~e~fr~lP-~r~ei----L~glL~aDlIgFqt~~~~~nFl 213 (474)
T PF00982_consen 140 RPGDLVWVHDYHLM-LLPQMLRERGPDARIGFFLHIPFPSSEIFRCLP-WREEI----LRGLLGADLIGFQTFEYARNFL 213 (474)
T ss_dssp -TT-EEEEESGGGT-THHHHHHHTT--SEEEEEE-S----HHHHTTST-THHHH----HHHHTTSSEEEESSHHHHHHHH
T ss_pred cCCCEEEEeCCcHH-HHHHHHHhhcCCceEeeEEecCCCCHHHHhhCC-cHHHH----HHHhhcCCEEEEecHHHHHHHH
Confidence 36789999998884 677777666788899999996211111100000 00111 1112223333333221
Q ss_pred ------c---------ccccccCCCCCEEEeCCCCCCcccccccCch-----hhHHHHHhhCCCCCCeEEEEEEeccccc
Q 002535 288 ------L---------PMMYSAFDAGNYYVIPGSPAKAWEADTNMDL-----YNDTVRVKMGFKPDDLVIAIVGTQFMYR 347 (911)
Q Consensus 288 ------l---------~ii~~~id~~ki~VIpg~gVD~~~f~~~~~~-----~k~~lR~~lgi~~d~~vIL~VGsrl~~~ 347 (911)
+ .+.+++ ....+.+.| .|||+..+.....+ ....++++++ .+..+|+.+. ++.+.
T Consensus 214 ~~~~r~lg~~~~~~~~~v~~~G-r~v~v~~~p-igId~~~~~~~~~~~~v~~~~~~l~~~~~--~~~~ii~gvD-rld~~ 288 (474)
T PF00982_consen 214 SCCKRLLGLEVDSDRGTVEYNG-RRVRVGVFP-IGIDPDAFAQLARSPEVQERAEELREKFK--GKRKIIVGVD-RLDYT 288 (474)
T ss_dssp HHHHHHS-EEEEETTE-EEETT-EEEEEEE-------HHHHHHHHH-S---HHHHHHHHHTT--T-SEEEEEE---B-GG
T ss_pred HHHHHHcCCcccCCCceEEECC-EEEEEEEee-ccCChHHHHhhccChHHHHHHHHHHHhcC--CCcEEEEEec-cchhh
Confidence 0 011111 011234444 68888655432111 1345666654 2346888888 77776
Q ss_pred cccccHHHHHHHHHHhhhhcccCCCCCCCEEEEEEeC---CCCC---chHHHHHHHHHH----cCCCC-ccEEEcc-cc-
Q 002535 348 GLWLEHALILRALLPLFSEVSVENESNSPIKVMILSG---DSTS---NYSVVIEAIAHN----LHYPL-GVVKHMA-AE- 414 (911)
Q Consensus 348 KGiKg~dlLLeAl~~L~~~~p~~~~~~~~vkLvIVGG---~~~e---~Y~~~Le~la~~----lgL~~-~~V~flG-~v- 414 (911)
||+..=++|+..+.+++|+ -..++.|+-++- ...+ .+..++++++.+ +|-.+ ..|.++- ..
T Consensus 289 ---kGi~~kl~Afe~fL~~~P~---~~~kv~liQi~~psr~~~~~y~~~~~~v~~~v~~IN~~~g~~~~~PI~~~~~~~~ 362 (474)
T PF00982_consen 289 ---KGIPEKLRAFERFLERYPE---YRGKVVLIQIAVPSREDVPEYQELRREVEELVGRINGKYGTPDWTPIIYIYRSLS 362 (474)
T ss_dssp ---G-HHHHHHHHHHHHHH-GG---GTTTEEEEEE--B-STTSHHHHHHHHHHHHHHHHHHHHH-BTTB-SEEEE-S---
T ss_pred ---cCHHHHHHHHHHHHHhCcC---ccCcEEEEEEeeccCccchhHHHHHHHHHHHHHHHHhhcccCCceeEEEEecCCC
Confidence 8888889999999999997 334588887872 2222 244555555443 23221 1244443 22
Q ss_pred -ccHHHHHHHcCeeEEcccCCcCCccHHHHHHHHcCCC----EEecCCCccccccccCccEEEEcCCCHHHHHHHHHHHH
Q 002535 415 -GDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKP----IIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVI 489 (911)
Q Consensus 415 -~dV~~~L~~ADVfVlPS~~E~qGFplvLLEAMA~G~P----VIaTd~gGi~EiV~dg~nGlLv~~~D~eaLAeaI~~LL 489 (911)
+++..+|+.||+++.+|..+ |.-++..|+.+|..+ +|.|...|..+.+.+ ..++|+|.|++++|++|.+.+
T Consensus 363 ~~~~~aly~~aDv~lvTslrD--GmNLva~Eyva~q~~~~GvLiLSefaGaa~~L~~--~al~VNP~d~~~~A~ai~~AL 438 (474)
T PF00982_consen 363 FEELLALYRAADVALVTSLRD--GMNLVAKEYVACQDDNPGVLILSEFAGAAEQLSE--AALLVNPWDIEEVADAIHEAL 438 (474)
T ss_dssp HHHHHHHHHH-SEEEE--SSB--S--HHHHHHHHHS-TS--EEEEETTBGGGGT-TT--S-EEE-TT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhEEecchhh--ccCCcceEEEEEecCCCCceEeeccCCHHHHcCC--ccEEECCCChHHHHHHHHHHH
Confidence 78999999999999999999 899999999999886 788998898888866 348999999999999999999
Q ss_pred HcCCCcHH-HHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 002535 490 TNGKISPF-ARNIASIGRRSVKNLMALETIEGYAMLLE 526 (911)
Q Consensus 490 sd~~~p~~-~~~mg~~ar~~ae~Fs~e~ia~~y~~Lye 526 (911)
+. +.. ++..-+..++.+.+++....++.+.+-++
T Consensus 439 ~M---~~~Er~~r~~~~~~~v~~~~~~~W~~~~l~~L~ 473 (474)
T PF00982_consen 439 TM---PPEERKERHARLREYVREHDVQWWAESFLRDLK 473 (474)
T ss_dssp T-----HHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHH
T ss_pred cC---CHHHHHHHHHHHHHHhHhCCHHHHHHHHHHHhh
Confidence 97 553 44455566777888999888888776554
No 103
>TIGR02094 more_P_ylases alpha-glucan phosphorylases. This family consists of known phosphorylases, and homologs believed to share the function of using inorganic phosphate to cleave an alpha 1,4 linkage between the terminal glucose residue and the rest of the polymer (maltodextrin, glycogen, etc.). The name of the glucose storage polymer substrate, and therefore the name of this enzyme, depends on the chain lengths and branching patterns. A number of the members of this family have been shown to operate on small maltodextrins, as may be obtained by utilization of exogenous sources. This family represents a distinct clade from the related family modeled by TIGR02093/PF00343.
Probab=98.86 E-value=9.2e-08 Score=115.02 Aligned_cols=183 Identities=14% Similarity=0.105 Sum_probs=139.2
Q ss_pred CCCCCeEEEEEEeccccccccccHHHHHHHHHHhhh--hcccCCCCCCCEEEEEEe-CCCC----CchHHHHHHHHHHcC
Q 002535 330 FKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFS--EVSVENESNSPIKVMILS-GDST----SNYSVVIEAIAHNLH 402 (911)
Q Consensus 330 i~~d~~vIL~VGsrl~~~KGiKg~dlLLeAl~~L~~--~~p~~~~~~~~vkLvIVG-G~~~----e~Y~~~Le~la~~lg 402 (911)
++++.++++++++...+ |+.+++++++..+.+ ..|+ .++++++.| |... ..+...+.+++++..
T Consensus 385 ~dpd~~~ig~v~Rl~~y----Kr~dLil~~i~~l~~i~~~~~-----~pvq~V~~Gka~p~d~~gk~~i~~i~~la~~~~ 455 (601)
T TIGR02094 385 LDPDVLTIGFARRFATY----KRADLIFRDLERLARILNNPE-----RPVQIVFAGKAHPADGEGKEIIQRIVEFSKRPE 455 (601)
T ss_pred cCCCCcEEEEEEcchhh----hhHHHHHHHHHHHHHHhhCCC-----CCeEEEEEEecCcccchHHHHHHHHHHHHhccc
Confidence 45677888888855556 999999999988874 2221 348999999 7544 235566666676544
Q ss_pred CCCccEEEc-cccccH-HHHHHHcCeeEE-ccc-CCcCCccHHHHHHHHcCCCEEecCCCccccccccCccEEEEcC---
Q 002535 403 YPLGVVKHM-AAEGDV-DSVLNTADVVIY-GSF-LEEQTFPEILVKALCFRKPIIAPDLSNIRKYVDDRVNGYLFPK--- 475 (911)
Q Consensus 403 L~~~~V~fl-G~v~dV-~~~L~~ADVfVl-PS~-~E~qGFplvLLEAMA~G~PVIaTd~gGi~EiV~dg~nGlLv~~--- 475 (911)
.++ +|.|+ ++...+ ..+++.||+++. ||. +|. .|.+=+-||..|.+.+++--|...|.. ++.||+.+..
T Consensus 456 ~~~-kv~f~~~Yd~~lA~~i~aG~Dv~L~~Psr~~Ea--cGtsqMka~~nGgL~~sv~DG~~~E~~-~~~nGf~f~~~~~ 531 (601)
T TIGR02094 456 FRG-RIVFLENYDINLARYLVSGVDVWLNNPRRPLEA--SGTSGMKAAMNGVLNLSILDGWWGEGY-DGDNGWAIGDGEE 531 (601)
T ss_pred CCC-CEEEEcCCCHHHHHHHhhhheeEEeCCCCCcCC--chHHHHHHHHcCCceeecccCcccccC-CCCcEEEECCCcc
Confidence 666 66664 676454 568999999999 998 885 799999999999999999988888876 6779999984
Q ss_pred ---------CCHHHHHHHHHHHH-----HcCC--CcHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHH
Q 002535 476 ---------ENIKALTHIILQVI-----TNGK--ISPFARNIASIGRRSV-KNLMALETIEGYAMLL 525 (911)
Q Consensus 476 ---------~D~eaLAeaI~~LL-----sd~~--~p~~~~~mg~~ar~~a-e~Fs~e~ia~~y~~Ly 525 (911)
.|+++|-++|.+.+ +++. +|..+.+|.+++.... ..|||+++++.|.++|
T Consensus 532 ~~~~~~~d~~da~~l~~~L~~ai~~~yy~~~~~~~p~~W~~~~k~am~~~~~~fsw~r~a~~Y~~~y 598 (601)
T TIGR02094 532 YDDEEEQDRLDAEALYDLLENEVIPLYYDRDEKGIPADWVEMMKESIATIAPRFSTNRMVREYVDKF 598 (601)
T ss_pred ccccccccCCCHHHHHHHHHHHHHHHHhcCCcccCcHHHHHHHHHHHhccCCCCCHHHHHHHHHHHh
Confidence 78999999997654 2211 1445778877777765 6799999999999876
No 104
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=98.81 E-value=4.7e-07 Score=99.48 Aligned_cols=251 Identities=16% Similarity=0.122 Sum_probs=137.9
Q ss_pred CCCCCC-hHHHHHHHHHHHHHHCCCeEEEEEeCCCc-chhhhhhcCceEEEeccch-------hHHHhhhhcCccEEEEc
Q 002535 152 PDLLID-PQQLQMVTIAIALREIGYAIQVYSLEDGR-AHEVWRNIGVPVAILQTGR-------EKASFVNWLNYDGILVN 222 (911)
Q Consensus 152 ~~L~~G-Gae~~v~~LAk~L~~~GyeV~V~t~~~g~-~~~~~~~~gi~v~~l~~~~-------~l~~lI~~~kpDIIhvh 222 (911)
.+..+| |--..+..||++|.++|++|..++..... .....+..+.++..++... .+...++..+||+|++.
T Consensus 8 a~~~iG~GHv~Rcl~LA~~l~~~g~~v~f~~~~~~~~~~~~i~~~g~~v~~~~~~~~~~~d~~~~~~~l~~~~~d~vV~D 87 (279)
T TIGR03590 8 ASSEIGLGHVMRCLTLARALHAQGAEVAFACKPLPGDLIDLLLSAGFPVYELPDESSRYDDALELINLLEEEKFDILIVD 87 (279)
T ss_pred CCccccccHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHcCCeEEEecCCCchhhhHHHHHHHHHhcCCCEEEEc
Confidence 344454 66778999999999999999999977644 2455677788877775532 35566777899999999
Q ss_pred CcchhHHHHHHhhCCCCCCCEEEEEcCchhhHHHHHHHhhcchhhHhhHHHHHhhcceEEecCCc-ccccccc-CCCCCE
Q 002535 223 SLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRATVVVFPDYV-LPMMYSA-FDAGNY 300 (911)
Q Consensus 223 s~~~~~~ia~L~~~~~~giPvV~tiH~~~L~~~l~k~~~~~~d~lIs~~~~~~~~a~~vvfpn~~-l~ii~~~-id~~ki 300 (911)
+..........+. ..+.+++ .+.+.... . ..+|.+ +-++.. ....|.. ++...
T Consensus 88 ~y~~~~~~~~~~k--~~~~~l~-~iDD~~~~-~------~~~D~v--------------in~~~~~~~~~y~~~~~~~~- 142 (279)
T TIGR03590 88 HYGLDADWEKLIK--EFGRKIL-VIDDLADR-P------HDCDLL--------------LDQNLGADASDYQGLVPANC- 142 (279)
T ss_pred CCCCCHHHHHHHH--HhCCeEE-EEecCCCC-C------cCCCEE--------------EeCCCCcCHhHhcccCcCCC-
Confidence 8765333333332 2233444 33321100 0 012222 111111 0011111 11122
Q ss_pred EEeCCCCCCcccccccCchhhHHHHHhhCCCCCCeEEEEEEeccccccccccHHHHHHHHHHhhhhcccCCCCCCCEEEE
Q 002535 301 YVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVM 380 (911)
Q Consensus 301 ~VIpg~gVD~~~f~~~~~~~k~~lR~~lgi~~d~~vIL~VGsrl~~~KGiKg~dlLLeAl~~L~~~~p~~~~~~~~vkLv 380 (911)
.+.-|. +. .+..++..........-++...+++++|+.... +....+++++..+.. + +++.
T Consensus 143 ~~l~G~--~Y---~~lr~eF~~~~~~~~~~~~~~~iLi~~GG~d~~----~~~~~~l~~l~~~~~---~-------~~i~ 203 (279)
T TIGR03590 143 RLLLGP--SY---ALLREEFYQLATANKRRKPLRRVLVSFGGADPD----NLTLKLLSALAESQI---N-------ISIT 203 (279)
T ss_pred eEEecc--hH---HhhhHHHHHhhHhhhcccccCeEEEEeCCcCCc----CHHHHHHHHHhcccc---C-------ceEE
Confidence 122221 11 111111110000000001224467777744333 334556777765432 2 4444
Q ss_pred EEeCCCCCchHHHHHHHHHHcCCCCccEEEccccccHHHHHHHcCeeEEcccCCcCCccHHHHHHHHcCCCEEecCCC
Q 002535 381 ILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLS 458 (911)
Q Consensus 381 IVGG~~~e~Y~~~Le~la~~lgL~~~~V~flG~v~dV~~~L~~ADVfVlPS~~E~qGFplvLLEAMA~G~PVIaTd~g 458 (911)
++-|+... ..+.+++.++. .+ ++++.++++++.++|.+||++|.++ |.++.|++++|+|+|+....
T Consensus 204 vv~G~~~~-~~~~l~~~~~~--~~--~i~~~~~~~~m~~lm~~aDl~Is~~-------G~T~~E~~a~g~P~i~i~~~ 269 (279)
T TIGR03590 204 LVTGSSNP-NLDELKKFAKE--YP--NIILFIDVENMAELMNEADLAIGAA-------GSTSWERCCLGLPSLAICLA 269 (279)
T ss_pred EEECCCCc-CHHHHHHHHHh--CC--CEEEEeCHHHHHHHHHHCCEEEECC-------chHHHHHHHcCCCEEEEEec
Confidence 44332221 12667777764 22 5999999999999999999999853 48999999999999987653
No 105
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=98.74 E-value=2e-06 Score=99.07 Aligned_cols=169 Identities=16% Similarity=0.213 Sum_probs=109.6
Q ss_pred CCCCCCeEEEEE-EeccccccccccHHHHHHHHHHhhhhcccCCCCCCCEEEEEEe-CCCCCchHHHHHHHHHHcCCCC-
Q 002535 329 GFKPDDLVIAIV-GTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPL- 405 (911)
Q Consensus 329 gi~~d~~vIL~V-Gsrl~~~KGiKg~dlLLeAl~~L~~~~p~~~~~~~~vkLvIVG-G~~~e~Y~~~Le~la~~lgL~~- 405 (911)
+++++.++++.+ |+|... -.+++..+++++..|.++ ++ +.+++.- +... .+.+++..++.++..
T Consensus 200 ~l~~~~~~lllLpGSR~ae--~~~~lp~~l~al~~L~~~-~~-------~~~v~~~~~~~~---~~~~~~~l~~~g~~~~ 266 (396)
T TIGR03492 200 PLLTGRFRIALLPGSRPPE--AYRNLKLLLRALEALPDS-QP-------FVFLAAIVPSLS---LEKLQAILEDLGWQLE 266 (396)
T ss_pred ccCCCCCEEEEECCCCHHH--HHccHHHHHHHHHHHhhC-CC-------eEEEEEeCCCCC---HHHHHHHHHhcCceec
Confidence 444444455554 544333 236777999999999755 45 7777665 4322 155666555545431
Q ss_pred ------------ccEEEccccccHHHHHHHcCeeEEcccCCcCCccHHHHHHHHcCCCEEecCCCccc---ccccc----
Q 002535 406 ------------GVVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSNIR---KYVDD---- 466 (911)
Q Consensus 406 ------------~~V~flG~v~dV~~~L~~ADVfVlPS~~E~qGFplvLLEAMA~G~PVIaTd~gGi~---EiV~d---- 466 (911)
..+.+..+..++..+|+.||++|..| | .+-.|++++|+|+|..+..+.. .+...
T Consensus 267 ~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~ADlvI~rS-----G--t~T~E~a~lg~P~Ilip~~~~q~na~~~~~~~~l 339 (396)
T TIGR03492 267 GSSEDQTSLFQKGTLEVLLGRGAFAEILHWADLGIAMA-----G--TATEQAVGLGKPVIQLPGKGPQFTYGFAEAQSRL 339 (396)
T ss_pred CCccccchhhccCceEEEechHhHHHHHHhCCEEEECc-----C--HHHHHHHHhCCCEEEEeCCCCHHHHHHHHhhHhh
Confidence 13666677788999999999999987 3 3449999999999998744331 22222
Q ss_pred -CccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH-HhcCHHHHHHHH
Q 002535 467 -RVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSV-KNLMALETIEGY 521 (911)
Q Consensus 467 -g~nGlLv~~~D~eaLAeaI~~LLsd~~~p~~~~~mg~~ar~~a-e~Fs~e~ia~~y 521 (911)
+ .+..+...+++.+++++.++++| ++.+++|.+++++.. +....+++++..
T Consensus 340 ~g-~~~~l~~~~~~~l~~~l~~ll~d---~~~~~~~~~~~~~~lg~~~a~~~ia~~i 392 (396)
T TIGR03492 340 LG-GSVFLASKNPEQAAQVVRQLLAD---PELLERCRRNGQERMGPPGASARIAESI 392 (396)
T ss_pred cC-CEEecCCCCHHHHHHHHHHHHcC---HHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 3 34455567889999999999999 888888875444443 334455555443
No 106
>COG0380 OtsA Trehalose-6-phosphate synthase [Carbohydrate transport and metabolism]
Probab=98.74 E-value=7.7e-07 Score=103.34 Aligned_cols=289 Identities=12% Similarity=0.111 Sum_probs=180.0
Q ss_pred CccEEEEcCcchhHHHHHHhhCCCCCCCEEEEEcCchhhHHHHHHHhhcchhhHhhHHHHHhhcceEEecCCc-------
Q 002535 215 NYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRATVVVFPDYV------- 287 (911)
Q Consensus 215 kpDIIhvhs~~~~~~ia~L~~~~~~giPvV~tiH~~~L~~~l~k~~~~~~d~lIs~~~~~~~~a~~vvfpn~~------- 287 (911)
.=|+|.+|..... .++.++..+....++.+..|..-....+-+.+. ....++ .....++.+.|....
T Consensus 147 ~gDiIWVhDYhL~-L~P~mlR~~~~~~~IgfFlHiPfPssEvfr~lP-~r~eIl----~gll~~dligFqt~~y~~nF~~ 220 (486)
T COG0380 147 PGDIIWVHDYHLL-LVPQMLRERIPDAKIGFFLHIPFPSSEVFRCLP-WREEIL----EGLLGADLIGFQTESYARNFLD 220 (486)
T ss_pred CCCEEEEEechhh-hhHHHHHHhCCCceEEEEEeCCCCCHHHHhhCc-hHHHHH----HHhhcCCeeEecCHHHHHHHHH
Confidence 3499999998884 666666555677788999997211111100000 000110 011122222222211
Q ss_pred -----------cccccccCCC--CCEEEeCCCCCCcccccccCchh-----hHHHHHhhCCCCCCeEEEEEEeccccccc
Q 002535 288 -----------LPMMYSAFDA--GNYYVIPGSPAKAWEADTNMDLY-----NDTVRVKMGFKPDDLVIAIVGTQFMYRGL 349 (911)
Q Consensus 288 -----------l~ii~~~id~--~ki~VIpg~gVD~~~f~~~~~~~-----k~~lR~~lgi~~d~~vIL~VGsrl~~~KG 349 (911)
..+.+++.+. .++..+| +|||+..+....... -.++++.++ .+..+|+.+. ++.+-
T Consensus 221 ~~~r~~~~~~~~~~~~~~~~~~~v~v~a~P-IgID~~~~~~~~~~~~v~~~~~el~~~~~--~~~kiivgvD-RlDy~-- 294 (486)
T COG0380 221 LCSRLLGVTGDADIRFNGADGRIVKVGAFP-IGIDPEEFERALKSPSVQEKVLELKAELG--RNKKLIVGVD-RLDYS-- 294 (486)
T ss_pred HHHHhccccccccccccccCCceEEEEEEe-eecCHHHHHHhhcCCchhhHHHHHHHHhc--CCceEEEEeh-hcccc--
Confidence 0011111111 2344555 789987655433221 233444433 3356777777 88887
Q ss_pred cccHHHHHHHHHHhhhhcccCCCCCCCEEEEEEeCCCC---Cc---hHHHHHHHHHHcC----CCC-ccEEEccc---cc
Q 002535 350 WLEHALILRALLPLFSEVSVENESNSPIKVMILSGDST---SN---YSVVIEAIAHNLH----YPL-GVVKHMAA---EG 415 (911)
Q Consensus 350 iKg~dlLLeAl~~L~~~~p~~~~~~~~vkLvIVGG~~~---e~---Y~~~Le~la~~lg----L~~-~~V~flG~---v~ 415 (911)
||+..=+.|+.+|..++|+ -..++.++-++-+.. ++ +...+++.+.+.+ -.+ ..|.++-. .+
T Consensus 295 -kGi~~rl~Afe~lL~~~Pe---~~~kvvliQi~~pSr~~v~~y~~~~~~i~~~V~rIN~~fG~~~~~Pv~~l~~~~~~~ 370 (486)
T COG0380 295 -KGIPQRLLAFERLLEEYPE---WRGKVVLLQIAPPSREDVEEYQALRLQIEELVGRINGEFGSLSWTPVHYLHRDLDRN 370 (486)
T ss_pred -cCcHHHHHHHHHHHHhChh---hhCceEEEEecCCCccccHHHHHHHHHHHHHHHHHHhhcCCCCcceeEEEeccCCHH
Confidence 7777779999999999986 334577777772222 22 3344444444322 111 12444432 27
Q ss_pred cHHHHHHHcCeeEEcccCCcCCccHHHHHHHHcCC----CEEecCCCccccccccCccEEEEcCCCHHHHHHHHHHHHHc
Q 002535 416 DVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRK----PIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITN 491 (911)
Q Consensus 416 dV~~~L~~ADVfVlPS~~E~qGFplvLLEAMA~G~----PVIaTd~gGi~EiV~dg~nGlLv~~~D~eaLAeaI~~LLsd 491 (911)
++..+|..||+++..|..+ |+-++..|+.||-- |.|-|...|....+.+ .++|+|.|.+++|++|.+.|+.
T Consensus 371 ~l~al~~~aDv~lVtplrD--GMNLvakEyVa~q~~~~G~LiLSeFaGaa~~L~~---AliVNP~d~~~va~ai~~AL~m 445 (486)
T COG0380 371 ELLALYRAADVMLVTPLRD--GMNLVAKEYVAAQRDKPGVLILSEFAGAASELRD---ALIVNPWDTKEVADAIKRALTM 445 (486)
T ss_pred HHHHHHhhhceeeeccccc--cccHHHHHHHHhhcCCCCcEEEeccccchhhhcc---CEeECCCChHHHHHHHHHHhcC
Confidence 8899999999999999999 89999999999865 7888998888887766 7999999999999999999997
Q ss_pred CCCcHHHH-HHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 002535 492 GKISPFAR-NIASIGRRSVKNLMALETIEGYAMLLEN 527 (911)
Q Consensus 492 ~~~p~~~~-~mg~~ar~~ae~Fs~e~ia~~y~~Lye~ 527 (911)
+...+ +.-+.-++.+.+++....++.+.+-+..
T Consensus 446 ---~~eEr~~r~~~~~~~v~~~d~~~W~~~fl~~la~ 479 (486)
T COG0380 446 ---SLEERKERHEKLLKQVLTHDVARWANSFLDDLAQ 479 (486)
T ss_pred ---CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 54433 3344556667888988888887665554
No 107
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=98.67 E-value=1.3e-06 Score=108.82 Aligned_cols=288 Identities=10% Similarity=0.076 Sum_probs=181.6
Q ss_pred cEEEEcCcchhHHHHHHhhCCCCCCCEEEEEcCchhhHHHHHHHhhcchhhHhhHHHHHhhcceEEecCCc---------
Q 002535 217 DGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRATVVVFPDYV--------- 287 (911)
Q Consensus 217 DIIhvhs~~~~~~ia~L~~~~~~giPvV~tiH~~~L~~~l~k~~~~~~d~lIs~~~~~~~~a~~vvfpn~~--------- 287 (911)
|+|.+|..... .+..++.++....++-+..|..-....+-+.+ .....++ ..+-.++.+.|.+..
T Consensus 203 d~VWVhDYhL~-llP~~LR~~~~~~~IgfFlHiPFPs~eifr~L-P~r~eiL----~glL~aDlIGFht~~yar~Fl~~~ 276 (854)
T PLN02205 203 DFVWIHDYHLM-VLPTFLRKRFNRVKLGFFLHSPFPSSEIYKTL-PIREELL----RALLNSDLIGFHTFDYARHFLSCC 276 (854)
T ss_pred CEEEEeCchhh-HHHHHHHhhCCCCcEEEEecCCCCChHHHhhC-CcHHHHH----HHHhcCCeEEecCHHHHHHHHHHH
Confidence 89999999884 77777766678889999999721111110000 0001110 111122222222211
Q ss_pred --------------cccccccCCCCCEEEeCCCCCCcccccccCchh-----hHHHHHhhCCCCCCeEEEEEEecccccc
Q 002535 288 --------------LPMMYSAFDAGNYYVIPGSPAKAWEADTNMDLY-----NDTVRVKMGFKPDDLVIAIVGTQFMYRG 348 (911)
Q Consensus 288 --------------l~ii~~~id~~ki~VIpg~gVD~~~f~~~~~~~-----k~~lR~~lgi~~d~~vIL~VGsrl~~~K 348 (911)
..+.+.+ ..-++.+.| .|||...+....... ..+++++++- ++..+|+-|. ++.+.
T Consensus 277 ~r~lgl~~~~~~g~~~~~~~G-r~v~v~~~P-igId~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~ilgVD-rlD~~- 351 (854)
T PLN02205 277 SRMLGLSYESKRGYIGLEYYG-RTVSIKILP-VGIHMGQLQSVLSLPETEAKVKELIKQFCD-QDRIMLLGVD-DMDIF- 351 (854)
T ss_pred HHHhCCcccCCCcceeEEECC-cEEEEEEEe-CeEcHHHHHHHhcChhHHHHHHHHHHHhcc-CCCEEEEEcc-Ccccc-
Confidence 0011110 111234445 788886654432211 2345555542 2456888888 77777
Q ss_pred ccccHHHHHHHHHHhhhhcccCCCCCCCEEEEEEeCCCC---C---chHHHHHHHHHH----cCCCC-ccEEEcc-c--c
Q 002535 349 LWLEHALILRALLPLFSEVSVENESNSPIKVMILSGDST---S---NYSVVIEAIAHN----LHYPL-GVVKHMA-A--E 414 (911)
Q Consensus 349 GiKg~dlLLeAl~~L~~~~p~~~~~~~~vkLvIVGG~~~---e---~Y~~~Le~la~~----lgL~~-~~V~flG-~--v 414 (911)
||+..=+.|+.++.+++|+ -..++.|+-+.-+.+ + .+..++++++.+ +|-.+ ..|+++. . .
T Consensus 352 --KGi~~kl~A~e~~L~~~P~---~~gkvvlvQia~psr~~~~~y~~~~~ev~~~v~rIN~~fg~~~~~Pv~~~~~~~~~ 426 (854)
T PLN02205 352 --KGISLKLLAMEQLLMQHPE---WQGKVVLVQIANPARGKGKDVKEVQAETHSTVKRINETFGKPGYDPIVLIDAPLKF 426 (854)
T ss_pred --cCHHHHHHHHHHHHHhCcc---ccCCEEEEEEecCCCcccHHHHHHHHHHHHHHHHHHhhcCCCCCceEEEEecCCCH
Confidence 8888889999999999997 333567777773222 1 234445555544 22211 1255553 2 2
Q ss_pred ccHHHHHHHcCeeEEcccCCcCCccHHHHHHHHcCC-------------------CEEecCCCccccccccCccEEEEcC
Q 002535 415 GDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRK-------------------PIIAPDLSNIRKYVDDRVNGYLFPK 475 (911)
Q Consensus 415 ~dV~~~L~~ADVfVlPS~~E~qGFplvLLEAMA~G~-------------------PVIaTd~gGi~EiV~dg~nGlLv~~ 475 (911)
+++..+|+.|||++.++..+ |+-++..|+.+|.. ++|.|...|....+. ..++|+|
T Consensus 427 ~e~~aly~~ADv~lVT~lRD--GMNLva~Eyia~~~~~~~~~~~~~~~~~~~~~gvLiLSEfaGaa~~L~---~Ai~VNP 501 (854)
T PLN02205 427 YERVAYYVVAECCLVTAVRD--GMNLIPYEYIISRQGNEKLDKLLGLEPSTPKKSMLVVSEFIGCSPSLS---GAIRVNP 501 (854)
T ss_pred HHHHHHHHhccEEEeccccc--cccccchheeEEccCccccccccccccccCCCCceEeeeccchhHHhC---cCeEECC
Confidence 78999999999999999999 79999999999864 378888888777664 2799999
Q ss_pred CCHHHHHHHHHHHHHcCCCcHHHH-HHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 002535 476 ENIKALTHIILQVITNGKISPFAR-NIASIGRRSVKNLMALETIEGYAMLLENV 528 (911)
Q Consensus 476 ~D~eaLAeaI~~LLsd~~~p~~~~-~mg~~ar~~ae~Fs~e~ia~~y~~Lye~v 528 (911)
.|++++|++|.+.++. +...+ .--++-++++.+++....++.+..-++.+
T Consensus 502 ~d~~~~a~ai~~AL~m---~~~Er~~R~~~~~~~v~~~d~~~W~~~fl~~l~~~ 552 (854)
T PLN02205 502 WNIDAVADAMDSALEM---AEPEKQLRHEKHYRYVSTHDVGYWARSFLQDLERT 552 (854)
T ss_pred CCHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHH
Confidence 9999999999999998 54333 33345677778889888888877766665
No 108
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=98.66 E-value=9.4e-06 Score=92.94 Aligned_cols=111 Identities=16% Similarity=0.149 Sum_probs=75.9
Q ss_pred CCCccEEEccccccHHHHHHHcCeeEEcccCCcCCccHHHHHHHHcCCCEEecCCCcc----ccccccCccEEEEcCC--
Q 002535 403 YPLGVVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSNI----RKYVDDRVNGYLFPKE-- 476 (911)
Q Consensus 403 L~~~~V~flG~v~dV~~~L~~ADVfVlPS~~E~qGFplvLLEAMA~G~PVIaTd~gGi----~EiV~dg~nGlLv~~~-- 476 (911)
+++ +|.+.+++.. .+++..||++|..+ | ..+++|||++|+|+|+....+- .+.+.+...|..++..
T Consensus 273 ~~~-~v~~~~~~p~-~~ll~~~~~~I~hg-----G-~~t~~Eal~~G~P~v~~p~~~dq~~~a~~l~~~g~g~~l~~~~~ 344 (392)
T TIGR01426 273 LPP-NVEVRQWVPQ-LEILKKADAFITHG-----G-MNSTMEALFNGVPMVAVPQGADQPMTARRIAELGLGRHLPPEEV 344 (392)
T ss_pred CCC-CeEEeCCCCH-HHHHhhCCEEEECC-----C-chHHHHHHHhCCCEEecCCcccHHHHHHHHHHCCCEEEeccccC
Confidence 445 7999998854 48999999999765 3 3588999999999999765442 2334444457766643
Q ss_pred CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 002535 477 NIKALTHIILQVITNGKISPFARNIASIGRRSVKNLMALETIEGYAML 524 (911)
Q Consensus 477 D~eaLAeaI~~LLsd~~~p~~~~~mg~~ar~~ae~Fs~e~ia~~y~~L 524 (911)
++++++++|.++++| ++.++++.+-+......-..+..++...++
T Consensus 345 ~~~~l~~ai~~~l~~---~~~~~~~~~l~~~~~~~~~~~~aa~~i~~~ 389 (392)
T TIGR01426 345 TAEKLREAVLAVLSD---PRYAERLRKMRAEIREAGGARRAADEIEGF 389 (392)
T ss_pred CHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHcCCHHHHHHHHHHh
Confidence 579999999999999 765555544333333334555555554443
No 109
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=98.64 E-value=2.5e-08 Score=98.68 Aligned_cols=157 Identities=15% Similarity=0.029 Sum_probs=78.2
Q ss_pred CCCCCChHHHHHHHHHHHHHHCCCeEEEEEeCCCcchhhh--hhcC--------ceEEEeccchhHHHhhhhcCccEEEE
Q 002535 152 PDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVW--RNIG--------VPVAILQTGREKASFVNWLNYDGILV 221 (911)
Q Consensus 152 ~~L~~GGae~~v~~LAk~L~~~GyeV~V~t~~~g~~~~~~--~~~g--------i~v~~l~~~~~l~~lI~~~kpDIIhv 221 (911)
.....||+|+++.+++++|.++||+|++++.......... .... ...........+...++..+||+||+
T Consensus 7 ~~~~~GG~e~~~~~l~~~l~~~G~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~DiVh~ 86 (177)
T PF13439_consen 7 FLPNIGGAERVVLNLARALAKRGHEVTVVSPGVKDPIEEELVKIFVKIPYPIRKRFLRSFFFMRRLRRLIKKEKPDIVHI 86 (177)
T ss_dssp -TTSSSHHHHHHHHHHHHHHHTT-EEEEEESS-TTS-SSTEEEE---TT-SSTSS--HHHHHHHHHHHHHHHHT-SEEEC
T ss_pred cCCCCChHHHHHHHHHHHHHHCCCEEEEEEcCCCccchhhccceeeeeecccccccchhHHHHHHHHHHHHHcCCCeEEe
Confidence 3457899999999999999999999999987653321111 0000 00001111233555677789999999
Q ss_pred cCcchhHHHHHHhhCCCCCCCEEEEEcCchhhHHHHHHHhhcchhh-HhhHHHHHhhcceEEecCCcc--ccccccCCCC
Q 002535 222 NSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLEL-LNDWKKVFNRATVVVFPDYVL--PMMYSAFDAG 298 (911)
Q Consensus 222 hs~~~~~~ia~L~~~~~~giPvV~tiH~~~L~~~l~k~~~~~~d~l-Is~~~~~~~~a~~vvfpn~~l--~ii~~~id~~ 298 (911)
|..... ....+... ++|+|++.|+.................+ .......++.++.++..+... .....+++.+
T Consensus 87 ~~~~~~-~~~~~~~~---~~~~v~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~vS~~~~~~l~~~~~~~~ 162 (177)
T PF13439_consen 87 HGPPAF-WIALLACR---KVPIVYTIHGPYFERRFLKSKLSPYSYLNFRIERKLYKKADRIIAVSESTKDELIKFGIPPE 162 (177)
T ss_dssp CTTHCC-CHHHHHHH---CSCEEEEE-HHH--HHTTTTSCCCHHHHHHCTTHHHHCCSSEEEESSHHHHHHHHHHT--SS
T ss_pred cccchh-HHHHHhcc---CCCEEEEeCCCcccccccccccchhhhhhhhhhhhHHhcCCEEEEECHHHHHHHHHhCCccc
Confidence 986653 22222211 6899999997442100000000000000 111223356667676665552 1222456778
Q ss_pred CEEEeCCCCCCcccc
Q 002535 299 NYYVIPGSPAKAWEA 313 (911)
Q Consensus 299 ki~VIpg~gVD~~~f 313 (911)
++.+||| |+|.+.|
T Consensus 163 ki~vI~n-gid~~~F 176 (177)
T PF13439_consen 163 KIHVIYN-GIDTDRF 176 (177)
T ss_dssp -EEE-----B-CCCH
T ss_pred CCEEEEC-CccHHHc
Confidence 9999995 9998554
No 110
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=98.56 E-value=4.9e-05 Score=87.05 Aligned_cols=82 Identities=13% Similarity=0.063 Sum_probs=63.2
Q ss_pred CCCCccEEEccccccHHHHHHHcCeeEEcccCCcCCccHHHHHHHHcCCCEEecCCCc----cccccccCccEEEEcCC-
Q 002535 402 HYPLGVVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSN----IRKYVDDRVNGYLFPKE- 476 (911)
Q Consensus 402 gL~~~~V~flG~v~dV~~~L~~ADVfVlPS~~E~qGFplvLLEAMA~G~PVIaTd~gG----i~EiV~dg~nGlLv~~~- 476 (911)
.+++ +|.+.++. +...++..||++|.-. -..++.||+++|+|+|.....+ ..+.+.....|...+..
T Consensus 285 ~~~~-~v~~~~~~-p~~~ll~~~d~~I~hg------G~~t~~eal~~GvP~v~~P~~~dQ~~~a~~~~~~G~g~~l~~~~ 356 (401)
T cd03784 285 DLPD-NVRVVDFV-PHDWLLPRCAAVVHHG------GAGTTAAALRAGVPQLVVPFFGDQPFWAARVAELGAGPALDPRE 356 (401)
T ss_pred CCCC-ceEEeCCC-CHHHHhhhhheeeecC------CchhHHHHHHcCCCEEeeCCCCCcHHHHHHHHHCCCCCCCCccc
Confidence 4455 79999997 5778999999999443 3589999999999999886654 23444444457776654
Q ss_pred -CHHHHHHHHHHHHHc
Q 002535 477 -NIKALTHIILQVITN 491 (911)
Q Consensus 477 -D~eaLAeaI~~LLsd 491 (911)
+++++++++.+++++
T Consensus 357 ~~~~~l~~al~~~l~~ 372 (401)
T cd03784 357 LTAERLAAALRRLLDP 372 (401)
T ss_pred CCHHHHHHHHHHHhCH
Confidence 689999999999987
No 111
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=98.55 E-value=5e-06 Score=94.88 Aligned_cols=245 Identities=13% Similarity=0.089 Sum_probs=135.5
Q ss_pred HHHhhhhcCccEEEEcCcchhHHHHHHhhCCCCCCCEEEEEcCchh-hHHHHHHHhhcchhhHhhHHHHHhhcceEEecC
Q 002535 207 KASFVNWLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTL-ATRARNYASSGQLELLNDWKKVFNRATVVVFPD 285 (911)
Q Consensus 207 l~~lI~~~kpDIIhvhs~~~~~~ia~L~~~~~~giPvV~tiH~~~L-~~~l~k~~~~~~d~lIs~~~~~~~~a~~vvfpn 285 (911)
+..++...+||+|+++.....++.+.++.. ..++|++ ++|+... ....+....+..+.+ ++....++
T Consensus 85 ~~~~~~~~~Pd~vlv~GD~~~~la~alaA~-~~~IPv~-HveaG~rs~~~~eE~~r~~i~~l----------a~l~f~~t 152 (365)
T TIGR03568 85 FSDAFERLKPDLVVVLGDRFEMLAAAIAAA-LLNIPIA-HIHGGEVTEGAIDESIRHAITKL----------SHLHFVAT 152 (365)
T ss_pred HHHHHHHhCCCEEEEeCCchHHHHHHHHHH-HhCCcEE-EEECCccCCCCchHHHHHHHHHH----------HhhccCCC
Confidence 455677799999999996653344444433 6689977 4554311 111111111111111 01111122
Q ss_pred Cc--cccccccCCCCCEEEeCCCCCCcccccccCchhhHHHHHhhCCCCC-CeEEEEEEeccc--cccccccHHHHHHHH
Q 002535 286 YV--LPMMYSAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPD-DLVIAIVGTQFM--YRGLWLEHALILRAL 360 (911)
Q Consensus 286 ~~--l~ii~~~id~~ki~VIpg~gVD~~~f~~~~~~~k~~lR~~lgi~~d-~~vIL~VGsrl~--~~KGiKg~dlLLeAl 360 (911)
.. ......+.+..+++++-+.++|.-.... ...+....++++++++ +.+++.+- +.. +......+..+++++
T Consensus 153 ~~~~~~L~~eg~~~~~i~~tG~~~iD~l~~~~--~~~~~~~~~~lgl~~~~~~vlvt~H-p~~~~~~~~~~~l~~li~~L 229 (365)
T TIGR03568 153 EEYRQRVIQMGEDPDRVFNVGSPGLDNILSLD--LLSKEELEEKLGIDLDKPYALVTFH-PVTLEKESAEEQIKELLKAL 229 (365)
T ss_pred HHHHHHHHHcCCCCCcEEEECCcHHHHHHhhh--ccCHHHHHHHhCCCCCCCEEEEEeC-CCcccccCchHHHHHHHHHH
Confidence 11 1122345556778877766666522111 1124566778888754 43333333 322 221123455555555
Q ss_pred HHhhhhcccCCCCCCCEEEEEEe-CCCCCchHHHHHHHHHHcCCCCccEEEcccc--ccHHHHHHHcCeeEEcccCCcCC
Q 002535 361 LPLFSEVSVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAAE--GDVDSVLNTADVVIYGSFLEEQT 437 (911)
Q Consensus 361 ~~L~~~~p~~~~~~~~vkLvIVG-G~~~e~Y~~~Le~la~~lgL~~~~V~flG~v--~dV~~~L~~ADVfVlPS~~E~qG 437 (911)
..+. .+ +.++.-. ++......+.++++.. + .+ +|.+++.. .++..+++.|+++|.-|
T Consensus 230 ~~~~---~~-------~~vi~P~~~p~~~~i~~~i~~~~~--~-~~-~v~l~~~l~~~~~l~Ll~~a~~vitdS------ 289 (365)
T TIGR03568 230 DELN---KN-------YIFTYPNADAGSRIINEAIEEYVN--E-HP-NFRLFKSLGQERYLSLLKNADAVIGNS------ 289 (365)
T ss_pred HHhc---cC-------CEEEEeCCCCCchHHHHHHHHHhc--C-CC-CEEEECCCChHHHHHHHHhCCEEEEcC------
Confidence 4432 12 3222222 3333122233333321 1 23 69999965 89999999999999655
Q ss_pred ccHHHHHHHHcCCCEEecCCCccccccccCccEEEEcCCCHHHHHHHHHHHHHc
Q 002535 438 FPEILVKALCFRKPIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITN 491 (911)
Q Consensus 438 FplvLLEAMA~G~PVIaTd~gGi~EiV~dg~nGlLv~~~D~eaLAeaI~~LLsd 491 (911)
+..+.||.++|+|||+ .+.-+|.+..|.|.+++ ..|++++.+++.++ .+
T Consensus 290 -Sggi~EA~~lg~Pvv~--l~~R~e~~~~g~nvl~v-g~~~~~I~~a~~~~-~~ 338 (365)
T TIGR03568 290 -SSGIIEAPSFGVPTIN--IGTRQKGRLRADSVIDV-DPDKEEIVKAIEKL-LD 338 (365)
T ss_pred -hhHHHhhhhcCCCEEe--ecCCchhhhhcCeEEEe-CCCHHHHHHHHHHH-hC
Confidence 1233799999999995 45788888888888878 45899999999994 45
No 112
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=98.53 E-value=2.4e-07 Score=90.00 Aligned_cols=143 Identities=17% Similarity=0.139 Sum_probs=76.3
Q ss_pred ChHHHHHHHHHHHHHHCCCeEEEEEeCCCcchhhhhhcCceEEEeccc------------hhHHHhh--hhcCccEEEEc
Q 002535 157 DPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTG------------REKASFV--NWLNYDGILVN 222 (911)
Q Consensus 157 GGae~~v~~LAk~L~~~GyeV~V~t~~~g~~~~~~~~~gi~v~~l~~~------------~~l~~lI--~~~kpDIIhvh 222 (911)
||++.++.+++++|.++||+|+|++....+........++++..++.. ..+...+ ...+||+||+|
T Consensus 1 GG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Dvv~~~ 80 (160)
T PF13579_consen 1 GGIERYVRELARALAARGHEVTVVTPQPDPEDDEEEEDGVRVHRLPLPRRPWPLRLLRFLRRLRRLLAARRERPDVVHAH 80 (160)
T ss_dssp SHHHHHHHHHHHHHHHTT-EEEEEEE---GGG-SEEETTEEEEEE--S-SSSGGGHCCHHHHHHHHCHHCT---SEEEEE
T ss_pred CCHHHHHHHHHHHHHHCCCEEEEEecCCCCcccccccCCceEEeccCCccchhhhhHHHHHHHHHHHhhhccCCeEEEec
Confidence 899999999999999999999999987755443334456665554332 1234445 66799999999
Q ss_pred CcchhHHHHHHhhCCCCCCCEEEEEcCchhhHHHHHHHhhcchhhHhhHHHHHhhcceEEecCCcc--ccccccCCCCCE
Q 002535 223 SLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRATVVVFPDYVL--PMMYSAFDAGNY 300 (911)
Q Consensus 223 s~~~~~~ia~L~~~~~~giPvV~tiH~~~L~~~l~k~~~~~~d~lIs~~~~~~~~a~~vvfpn~~l--~ii~~~id~~ki 300 (911)
++.. ..+..++. ...++|+|+++|+...... ........ ....+..+..++.++..+... .+...+++.+++
T Consensus 81 ~~~~-~~~~~~~~-~~~~~p~v~~~h~~~~~~~-~~~~~~~~---~~~~~~~~~~ad~vi~~S~~~~~~l~~~g~~~~ri 154 (160)
T PF13579_consen 81 SPTA-GLVAALAR-RRRGIPLVVTVHGTLFRRG-SRWKRRLY---RWLERRLLRRADRVIVVSEAMRRYLRRYGVPPDRI 154 (160)
T ss_dssp HHHH-HHHHHHHH-HHHT--EEEE-SS-T-------HHHHHH---HHHHHHHHHH-SEEEESSHHHHHHHHHH---GGGE
T ss_pred ccch-hHHHHHHH-HccCCcEEEEECCCchhhc-cchhhHHH---HHHHHHHHhcCCEEEECCHHHHHHHHHhCCCCCcE
Confidence 9654 35555553 2457999999998433211 11111111 122556677888877776652 222345667788
Q ss_pred EEeCC
Q 002535 301 YVIPG 305 (911)
Q Consensus 301 ~VIpg 305 (911)
.+|||
T Consensus 155 ~vipn 159 (160)
T PF13579_consen 155 HVIPN 159 (160)
T ss_dssp EE---
T ss_pred EEeCc
Confidence 88884
No 113
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=98.38 E-value=3.3e-05 Score=86.31 Aligned_cols=78 Identities=19% Similarity=0.258 Sum_probs=60.5
Q ss_pred cEEEcccc-ccHHHHHHHcCeeEEcccCCcCCccHHHHHHHHcCCCEEecCCCcccc------ccccCccEEEEcCCCHH
Q 002535 407 VVKHMAAE-GDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSNIRK------YVDDRVNGYLFPKENIK 479 (911)
Q Consensus 407 ~V~flG~v-~dV~~~L~~ADVfVlPS~~E~qGFplvLLEAMA~G~PVIaTd~gGi~E------iV~dg~nGlLv~~~D~e 479 (911)
++.+.++. +++.++|..||++|.-+ |+ .++.||+++|+|+|..+..+..| .+.+...|...+..+.
T Consensus 230 ~v~~~~~~~~~~~~~l~~ad~vI~~~-----G~-~t~~Ea~~~g~P~l~ip~~~~~eQ~~na~~l~~~g~~~~l~~~~~- 302 (321)
T TIGR00661 230 NVEIRRITTDNFKELIKNAELVITHG-----GF-SLISEALSLGKPLIVIPDLGQFEQGNNAVKLEDLGCGIALEYKEL- 302 (321)
T ss_pred CEEEEECChHHHHHHHHhCCEEEECC-----Ch-HHHHHHHHcCCCEEEEcCCCcccHHHHHHHHHHCCCEEEcChhhH-
Confidence 68888888 58999999999999876 23 37999999999999988776444 3445556888887777
Q ss_pred HHHHHHHHHHHc
Q 002535 480 ALTHIILQVITN 491 (911)
Q Consensus 480 aLAeaI~~LLsd 491 (911)
++.+++..+++|
T Consensus 303 ~~~~~~~~~~~~ 314 (321)
T TIGR00661 303 RLLEAILDIRNM 314 (321)
T ss_pred HHHHHHHhcccc
Confidence 666666666655
No 114
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=98.37 E-value=1.3e-05 Score=93.32 Aligned_cols=182 Identities=9% Similarity=0.051 Sum_probs=121.1
Q ss_pred HHHhhCCCCCCeEEEEEEeccccccccccHHHHHHHHHHhhhhcccCCCCCCCEEEEEEeCCCCCchHHHHHHHHHHcCC
Q 002535 324 VRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILSGDSTSNYSVVIEAIAHNLHY 403 (911)
Q Consensus 324 lR~~lgi~~d~~vIL~VGsrl~~~KGiKg~dlLLeAl~~L~~~~p~~~~~~~~vkLvIVGG~~~e~Y~~~Le~la~~lgL 403 (911)
.|+.+|++++.++++.+.+. . |-....+++..++.+..|+ .+|++...+.. -...+++.+.+.|+
T Consensus 275 ~R~~~gLp~d~vvF~~fn~~--~----KI~p~~l~~W~~IL~~vP~-------S~L~L~~~~~~--~~~~l~~~~~~~Gv 339 (468)
T PF13844_consen 275 TRAQYGLPEDAVVFGSFNNL--F----KISPETLDLWARILKAVPN-------SRLWLLRFPAS--GEARLRRRFAAHGV 339 (468)
T ss_dssp ETGGGT--SSSEEEEE-S-G--G----G--HHHHHHHHHHHHHSTT-------EEEEEEETSTT--HHHHHHHHHHHTTS
T ss_pred CHHHcCCCCCceEEEecCcc--c----cCCHHHHHHHHHHHHhCCC-------cEEEEeeCCHH--HHHHHHHHHHHcCC
Confidence 47789999988666655522 2 5567779999999999998 88888774322 24778888999999
Q ss_pred CCccEEEcccc--ccHHHHHHHcCeeEEcccCCcCCccHHHHHHHHcCCCEEecCCCcccc-----cc-ccCccEEEEcC
Q 002535 404 PLGVVKHMAAE--GDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSNIRK-----YV-DDRVNGYLFPK 475 (911)
Q Consensus 404 ~~~~V~flG~v--~dV~~~L~~ADVfVlPS~~E~qGFplvLLEAMA~G~PVIaTd~gGi~E-----iV-~dg~nGlLv~~ 475 (911)
...++.|.+.. .+-...+..+|+++=+..+. -+.+.+||+.+|+|||+-....... ++ .=|..-++.
T Consensus 340 ~~~Ri~f~~~~~~~ehl~~~~~~DI~LDT~p~n---G~TTt~dALwmGVPvVTl~G~~~~sR~~aSiL~~lGl~ElIA-- 414 (468)
T PF13844_consen 340 DPDRIIFSPVAPREEHLRRYQLADICLDTFPYN---GGTTTLDALWMGVPVVTLPGETMASRVGASILRALGLPELIA-- 414 (468)
T ss_dssp -GGGEEEEE---HHHHHHHGGG-SEEE--SSS-----SHHHHHHHHHT--EEB---SSGGGSHHHHHHHHHT-GGGB---
T ss_pred ChhhEEEcCCCCHHHHHHHhhhCCEEeeCCCCC---CcHHHHHHHHcCCCEEeccCCCchhHHHHHHHHHcCCchhcC--
Confidence 97799999864 45556778899999886555 3899999999999999965332211 11 112222333
Q ss_pred CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH-Hh--cCHHHHHHHHHHHHHHH
Q 002535 476 ENIKALTHIILQVITNGKISPFARNIASIGRRSV-KN--LMALETIEGYAMLLENV 528 (911)
Q Consensus 476 ~D~eaLAeaI~~LLsd~~~p~~~~~mg~~ar~~a-e~--Fs~e~ia~~y~~Lye~v 528 (911)
.|.+++++.-.++.+| ++.++++..+-++.. +. |+....++.+++.|+.+
T Consensus 415 ~s~~eYv~~Av~La~D---~~~l~~lR~~Lr~~~~~SpLfd~~~~ar~lE~a~~~m 467 (468)
T PF13844_consen 415 DSEEEYVEIAVRLATD---PERLRALRAKLRDRRSKSPLFDPKRFARNLEAAYRQM 467 (468)
T ss_dssp SSHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHSGGG-HHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHh
Confidence 4899999999999999 999999988887766 33 89999999999888764
No 115
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=98.37 E-value=4.9e-05 Score=84.15 Aligned_cols=118 Identities=14% Similarity=0.156 Sum_probs=79.8
Q ss_pred CCCeEEEEEEeccccccccccHHHHHHHHHHhhhhcccCCCCCCCEEEEEEeCCCCCchHHHHHHHHHHcCCCCccEEEc
Q 002535 332 PDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHM 411 (911)
Q Consensus 332 ~d~~vIL~VGsrl~~~KGiKg~dlLLeAl~~L~~~~p~~~~~~~~vkLvIVGG~~~e~Y~~~Le~la~~lgL~~~~V~fl 411 (911)
+.+.+++++|+ ... ..++++++.+. + ..++++|....+ .... +|++.
T Consensus 191 ~~~~iLv~~gg-~~~-------~~~~~~l~~~~----~-------~~~~v~g~~~~~-------------~~~~-ni~~~ 237 (318)
T PF13528_consen 191 DEPKILVYFGG-GGP-------GDLIEALKALP----D-------YQFIVFGPNAAD-------------PRPG-NIHVR 237 (318)
T ss_pred CCCEEEEEeCC-CcH-------HHHHHHHHhCC----C-------CeEEEEcCCccc-------------ccCC-CEEEe
Confidence 45668888883 222 14566666543 3 688888832210 0133 79999
Q ss_pred ccc-ccHHHHHHHcCeeEEcccCCcCCccHHHHHHHHcCCCEEecCCCcccc------ccccCccEEEEcC--CCHHHHH
Q 002535 412 AAE-GDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSNIRK------YVDDRVNGYLFPK--ENIKALT 482 (911)
Q Consensus 412 G~v-~dV~~~L~~ADVfVlPS~~E~qGFplvLLEAMA~G~PVIaTd~gGi~E------iV~dg~nGlLv~~--~D~eaLA 482 (911)
++. .++.+++..||++|..+- -.++.||+++|+|+|.-...+..| .+..-..|..++. -+++.|+
T Consensus 238 ~~~~~~~~~~m~~ad~vIs~~G------~~t~~Ea~~~g~P~l~ip~~~~~EQ~~~a~~l~~~G~~~~~~~~~~~~~~l~ 311 (318)
T PF13528_consen 238 PFSTPDFAELMAAADLVISKGG------YTTISEALALGKPALVIPRPGQDEQEYNARKLEELGLGIVLSQEDLTPERLA 311 (318)
T ss_pred ecChHHHHHHHHhCCEEEECCC------HHHHHHHHHcCCCEEEEeCCCCchHHHHHHHHHHCCCeEEcccccCCHHHHH
Confidence 987 899999999999997762 236999999999999988766444 3334344666553 3578888
Q ss_pred HHHHHH
Q 002535 483 HIILQV 488 (911)
Q Consensus 483 eaI~~L 488 (911)
++|.++
T Consensus 312 ~~l~~~ 317 (318)
T PF13528_consen 312 EFLERL 317 (318)
T ss_pred HHHhcC
Confidence 888754
No 116
>cd04299 GT1_Glycogen_Phosphorylase_like This family is most closely related to the oligosaccharide phosphorylase domain family and other unidentified sequences. Oligosaccharide phosphorylase catalyzes the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The members of this family are found in bacteria and Archaea.
Probab=98.34 E-value=1.3e-05 Score=98.81 Aligned_cols=185 Identities=14% Similarity=0.118 Sum_probs=134.4
Q ss_pred CCCCCeEEEEEEeccccccccccHHHHHHHHHHhhhhcccCCCCCCCEEEEEEe-CCCCCc----hHHHHHHHHHHcCCC
Q 002535 330 FKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILS-GDSTSN----YSVVIEAIAHNLHYP 404 (911)
Q Consensus 330 i~~d~~vIL~VGsrl~~~KGiKg~dlLLeAl~~L~~~~p~~~~~~~~vkLvIVG-G~~~e~----Y~~~Le~la~~lgL~ 404 (911)
++++.++|+++.+...+ |+.+++++.+..|.+-.. +....++++++| +...+. +...+.+++++....
T Consensus 474 ldpd~ltigfarRfa~Y----KR~~Lil~dl~rl~~il~---~~~~pvQ~IfaGKAhP~d~~gK~iIk~i~~~a~~p~~~ 546 (778)
T cd04299 474 LDPNVLTIGFARRFATY----KRATLLLRDPERLKRLLN---DPERPVQFIFAGKAHPADEPGKELIQEIVEFSRRPEFR 546 (778)
T ss_pred cCCCccEEeeeecchhh----hhHHHHHHHHHHHHHHhh---CCCCCeEEEEEEecCccchHHHHHHHHHHHHHhCcCCC
Confidence 45677788888855566 999999999888865211 111348999999 643332 233444555544556
Q ss_pred CccEEEc-cccccH-HHHHHHcCeeEEccc--CCcCCccHHHHHHHHcCCCEEecCCCccccccccCccEEEEcC-----
Q 002535 405 LGVVKHM-AAEGDV-DSVLNTADVVIYGSF--LEEQTFPEILVKALCFRKPIIAPDLSNIRKYVDDRVNGYLFPK----- 475 (911)
Q Consensus 405 ~~~V~fl-G~v~dV-~~~L~~ADVfVlPS~--~E~qGFplvLLEAMA~G~PVIaTd~gGi~EiV~dg~nGlLv~~----- 475 (911)
+ +|.|+ ++...+ ..+++.||+.+.||+ +|. .|.+=+-||..|.+-+++--|...|.- ++.||+.+..
T Consensus 547 ~-kVvfle~Yd~~lA~~LvaG~DvwLn~prrp~EA--sGTSgMKA~~NG~LnlSvlDGww~E~~-~g~nGwaig~~~~~~ 622 (778)
T cd04299 547 G-RIVFLEDYDMALARHLVQGVDVWLNTPRRPLEA--SGTSGMKAALNGGLNLSVLDGWWDEGY-DGENGWAIGDGDEYE 622 (778)
T ss_pred C-cEEEEcCCCHHHHHHHHhhhhhcccCCCCCCCC--CccchHHHHHcCCeeeecccCcccccc-CCCCceEeCCCcccc
Confidence 5 67665 566444 568999999999998 885 788899999999999999999888877 7899999988
Q ss_pred -------CCHHHHHHHHHHHHH----cC---CCcHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHH
Q 002535 476 -------ENIKALTHIILQVIT----NG---KISPFARNIASIGRRSV-KNLMALETIEGYAMLL 525 (911)
Q Consensus 476 -------~D~eaLAeaI~~LLs----d~---~~p~~~~~mg~~ar~~a-e~Fs~e~ia~~y~~Ly 525 (911)
.|+++|-+.|.+-+- +. -.|..+.+|.+++.... ..|++.++++.|.+-+
T Consensus 623 ~~~~~d~~da~~Ly~~Le~~i~p~yy~r~~~g~p~~W~~~~k~sm~~~~p~fs~~Rmv~eY~~~~ 687 (778)
T cd04299 623 DDEYQDAEEAEALYDLLENEVIPLFYDRDEGGYPPGWVAMMKHSMATLGPRFSAERMVREYVERF 687 (778)
T ss_pred ChhhcchhhHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcccCCCHHHHHHHHHHHh
Confidence 456777777754222 20 12667778888887776 7899999999997644
No 117
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=98.33 E-value=0.00015 Score=81.65 Aligned_cols=277 Identities=12% Similarity=0.102 Sum_probs=157.7
Q ss_pred hHHHHHHHHHHHHHHCCCeEEEEEeCCCcchhhhhhcCceEEEeccc---------------hhHHHhhhhcCccEEEEc
Q 002535 158 PQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTG---------------REKASFVNWLNYDGILVN 222 (911)
Q Consensus 158 Gae~~v~~LAk~L~~~GyeV~V~t~~~g~~~~~~~~~gi~v~~l~~~---------------~~l~~lI~~~kpDIIhvh 222 (911)
..-.....+++.|.+.||+|.|.+...+......+.+|++...+... ..+.+++...+||+++++
T Consensus 11 ~hvhfFk~~I~eL~~~GheV~it~R~~~~~~~LL~~yg~~y~~iG~~g~~~~~Kl~~~~~R~~~l~~~~~~~~pDv~is~ 90 (335)
T PF04007_consen 11 AHVHFFKNIIRELEKRGHEVLITARDKDETEELLDLYGIDYIVIGKHGDSLYGKLLESIERQYKLLKLIKKFKPDVAISF 90 (335)
T ss_pred hHHHHHHHHHHHHHhCCCEEEEEEeccchHHHHHHHcCCCeEEEcCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCEEEec
Confidence 35566778999999999999999998887777888888887666432 123344666899999987
Q ss_pred CcchhHHHHHHhhCCCCCCCEEEEEcCchhhHHHHHHHhhcchhhHhhHHHHHhhcceEEecCCccc--cccccCCCCCE
Q 002535 223 SLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRATVVVFPDYVLP--MMYSAFDAGNY 300 (911)
Q Consensus 223 s~~~~~~ia~L~~~~~~giPvV~tiH~~~L~~~l~k~~~~~~d~lIs~~~~~~~~a~~vvfpn~~l~--ii~~~id~~ki 300 (911)
+....+.++. ..++|.|....+.. .....+. .+..++.++.|...-. ....+.+ +++
T Consensus 91 ~s~~a~~va~-----~lgiP~I~f~D~e~-a~~~~~L--------------t~Pla~~i~~P~~~~~~~~~~~G~~-~~i 149 (335)
T PF04007_consen 91 GSPEAARVAF-----GLGIPSIVFNDTEH-AIAQNRL--------------TLPLADVIITPEAIPKEFLKRFGAK-NQI 149 (335)
T ss_pred CcHHHHHHHH-----HhCCCeEEEecCch-hhcccee--------------ehhcCCeeECCcccCHHHHHhcCCc-CCE
Confidence 7655322332 34689887776421 1111111 1223344444421100 0011111 233
Q ss_pred EEeCCCCCCccc-ccccCchhhHHHHHhhCCCCCCeEEEEEEe-ccccccccccHHHHHHHHHHhhhhcccCCCCCCCEE
Q 002535 301 YVIPGSPAKAWE-ADTNMDLYNDTVRVKMGFKPDDLVIAIVGT-QFMYRGLWLEHALILRALLPLFSEVSVENESNSPIK 378 (911)
Q Consensus 301 ~VIpg~gVD~~~-f~~~~~~~k~~lR~~lgi~~d~~vIL~VGs-rl~~~KGiKg~dlLLeAl~~L~~~~p~~~~~~~~vk 378 (911)
...+ |++... ..++.+ .....+++|+++++.+++=... .-.+..|-++ .+-+.+..|.+.. + .
T Consensus 150 ~~y~--G~~E~ayl~~F~P--d~~vl~~lg~~~~~yIvvR~~~~~A~y~~~~~~--i~~~ii~~L~~~~-~-------~- 214 (335)
T PF04007_consen 150 RTYN--GYKELAYLHPFKP--DPEVLKELGLDDEPYIVVRPEAWKASYDNGKKS--ILPEIIEELEKYG-R-------N- 214 (335)
T ss_pred EEEC--CeeeEEeecCCCC--ChhHHHHcCCCCCCEEEEEeccccCeeecCccc--hHHHHHHHHHhhC-c-------e-
Confidence 3333 333211 122333 3566778898766644433322 1123333222 3445555555442 2 2
Q ss_pred EEEEe-CCCCCchHHHHHHHHHHcCCCCccEEEccccccHHHHHHHcCeeEEcccCCcCCccHHHHHHHHcCCCEEecCC
Q 002535 379 VMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDL 457 (911)
Q Consensus 379 LvIVG-G~~~e~Y~~~Le~la~~lgL~~~~V~flG~v~dV~~~L~~ADVfVlPS~~E~qGFplvLLEAMA~G~PVIaTd~ 457 (911)
++++. .... +.+.+..+ +.+....-+..+++..||++|--+ |....||...|+|.|.+..
T Consensus 215 vV~ipr~~~~-------~~~~~~~~-----~~i~~~~vd~~~Ll~~a~l~Ig~g-------gTMa~EAA~LGtPaIs~~~ 275 (335)
T PF04007_consen 215 VVIIPRYEDQ-------RELFEKYG-----VIIPPEPVDGLDLLYYADLVIGGG-------GTMAREAALLGTPAISCFP 275 (335)
T ss_pred EEEecCCcch-------hhHHhccC-----ccccCCCCCHHHHHHhcCEEEeCC-------cHHHHHHHHhCCCEEEecC
Confidence 55555 2221 12223221 334433346779999999999543 6778899999999999764
Q ss_pred C---ccccccccCccEEEEcCCCHHHHHHHHHHHHHc
Q 002535 458 S---NIRKYVDDRVNGYLFPKENIKALTHIILQVITN 491 (911)
Q Consensus 458 g---Gi~EiV~dg~nGlLv~~~D~eaLAeaI~~LLsd 491 (911)
| +.-+++.+ .|+++...|++++.+.+.+....
T Consensus 276 g~~~~vd~~L~~--~Gll~~~~~~~ei~~~v~~~~~~ 310 (335)
T PF04007_consen 276 GKLLAVDKYLIE--KGLLYHSTDPDEIVEYVRKNLGK 310 (335)
T ss_pred CcchhHHHHHHH--CCCeEecCCHHHHHHHHHHhhhc
Confidence 4 23344443 58899999999999977665554
No 118
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=6.7e-05 Score=87.44 Aligned_cols=332 Identities=11% Similarity=0.094 Sum_probs=199.2
Q ss_pred CCCCEEEEEeCCCCCChHHHHHHHHHHHHHHCCCeEEEEEeCCCc--chhhhhhcCc-eEEEec--cchhHHHhhhhcCc
Q 002535 142 YRKPQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGR--AHEVWRNIGV-PVAILQ--TGREKASFVNWLNY 216 (911)
Q Consensus 142 ~rkprIalI~~~L~~GGae~~v~~LAk~L~~~GyeV~V~t~~~g~--~~~~~~~~gi-~v~~l~--~~~~l~~lI~~~kp 216 (911)
.+++||.++.+++..-.....+..+.+.+.+-.+||..+..+... ....+-...+ .+..+. ....+..-|...+.
T Consensus 257 ~~rlRvGylS~dlr~Havg~l~~~v~e~hDRdkfEvfay~~g~~~~dal~~rI~a~~~~~~~~~~~dd~e~a~~I~~d~I 336 (620)
T COG3914 257 GKRLRVGYLSSDLRSHAVGFLLRWVFEYHDRDKFEVFAYSLGPPHTDALQERISAAVEKWYPIGRMDDAEIANAIRTDGI 336 (620)
T ss_pred ccceeEEEeccccccchHHHHHHHHHHHhchhheEEEEEecCCCCchhHHHHHHHhhhheeccCCcCHHHHHHHHHhcCC
Confidence 455899999999998888888888888888888899888876321 1111111111 122232 12345556777788
Q ss_pred cEEEEcCcchhHHHHHHhhCCCCCCCEEEEEcCc--hhhHHHHHHHhhcchhhHhhHHHHHhhcceEEecCCcccccccc
Q 002535 217 DGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEG--TLATRARNYASSGQLELLNDWKKVFNRATVVVFPDYVLPMMYSA 294 (911)
Q Consensus 217 DIIhvhs~~~~~~ia~L~~~~~~giPvV~tiH~~--~L~~~l~k~~~~~~d~lIs~~~~~~~~a~~vvfpn~~l~ii~~~ 294 (911)
||.+--+-...-....++. .+-.|+.++.=|. +... ...+.+| ++.++.|...... |
T Consensus 337 dILvDl~g~T~d~r~~v~A--~RpAPiqvswlGy~aT~g~-------p~~DY~I---------~D~y~vPp~ae~y-y-- 395 (620)
T COG3914 337 DILVDLDGHTVDTRCQVFA--HRPAPIQVSWLGYPATTGS-------PNMDYFI---------SDPYTVPPTAEEY-Y-- 395 (620)
T ss_pred eEEEeccCceeccchhhhh--cCCCceEEeecccccccCC-------CcceEEe---------eCceecCchHHHH-H--
Confidence 8877433333112222222 2335777666551 1110 0111111 1111111000000 0
Q ss_pred CCCCCEEEeCC--CCCCcccccccCchhhHHHHHhhCCCCCCeEEEEEEeccccccccccHHHHHHHHHHhhhhcccCCC
Q 002535 295 FDAGNYYVIPG--SPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENE 372 (911)
Q Consensus 295 id~~ki~VIpg--~gVD~~~f~~~~~~~k~~lR~~lgi~~d~~vIL~VGsrl~~~KGiKg~dlLLeAl~~L~~~~p~~~~ 372 (911)
.+++.-+|. .|+|- +.+..+. -.|.++|++++.++.+++++.+ |-...+++-..++.+..|+
T Consensus 396 --sEkl~RLp~cy~p~d~--~~~v~p~---~sR~~lglp~~avVf~c~~n~~------K~~pev~~~wmqIL~~vP~--- 459 (620)
T COG3914 396 --SEKLWRLPQCYQPVDG--FEPVTPP---PSRAQLGLPEDAVVFCCFNNYF------KITPEVFALWMQILSAVPN--- 459 (620)
T ss_pred --HHHHHhcccccCCCCC--cccCCCC---cchhhcCCCCCeEEEEecCCcc------cCCHHHHHHHHHHHHhCCC---
Confidence 000000110 01111 1111111 2367889999887666666332 4455567777888888888
Q ss_pred CCCCEEEEEEeCCCCCchHHHHHHHHHHcCCCCccEEEcccc--ccHHHHHHHcCeeEEcccCCcCCccHHHHHHHHcCC
Q 002535 373 SNSPIKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAE--GDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRK 450 (911)
Q Consensus 373 ~~~~vkLvIVGG~~~e~Y~~~Le~la~~lgL~~~~V~flG~v--~dV~~~L~~ADVfVlPS~~E~qGFplvLLEAMA~G~ 450 (911)
-.|++.||...+.....+++++++.|+...++.|.+.. ++..+.|.-||+++=+.-+- -..+.+||+-+|+
T Consensus 460 ----Svl~L~~~~~~~~~~~~l~~la~~~Gv~~eRL~f~p~~~~~~h~a~~~iADlvLDTyPY~---g~TTa~daLwm~v 532 (620)
T COG3914 460 ----SVLLLKAGGDDAEINARLRDLAEREGVDSERLRFLPPAPNEDHRARYGIADLVLDTYPYG---GHTTASDALWMGV 532 (620)
T ss_pred ----cEEEEecCCCcHHHHHHHHHHHHHcCCChhheeecCCCCCHHHHHhhchhheeeecccCC---CccchHHHHHhcC
Confidence 68888885456667789999999999988899999966 67788999999999665544 3678999999999
Q ss_pred CEEecC-------CC-------ccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH---hcC
Q 002535 451 PIIAPD-------LS-------NIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSVK---NLM 513 (911)
Q Consensus 451 PVIaTd-------~g-------Gi~EiV~dg~nGlLv~~~D~eaLAeaI~~LLsd~~~p~~~~~mg~~ar~~ae---~Fs 513 (911)
|||+-. .| |++|.|. .+.++.++.-..+-+| ..++++.+..-+...+ -|+
T Consensus 533 PVlT~~G~~FasR~~~si~~~agi~e~vA----------~s~~dYV~~av~~g~d---ral~q~~r~~l~~~r~tspL~d 599 (620)
T COG3914 533 PVLTRVGEQFASRNGASIATNAGIPELVA----------DSRADYVEKAVAFGSD---RALRQQVRAELKRSRQTSPLFD 599 (620)
T ss_pred ceeeeccHHHHHhhhHHHHHhcCCchhhc----------CCHHHHHHHHHHhccc---HHHHHhhHHHHHhccccCcccC
Confidence 999743 22 3344332 3667777777777777 6566665544333332 389
Q ss_pred HHHHHHHHHHHHHHHhc
Q 002535 514 ALETIEGYAMLLENVLK 530 (911)
Q Consensus 514 ~e~ia~~y~~Lye~vL~ 530 (911)
.+..+.++.++|....+
T Consensus 600 ~~~far~le~~y~~M~~ 616 (620)
T COG3914 600 PKAFARKLETLYWGMWS 616 (620)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999987653
No 119
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=98.15 E-value=4e-05 Score=74.21 Aligned_cols=100 Identities=12% Similarity=0.158 Sum_probs=68.4
Q ss_pred EEEEEeCCCCCChHHHHHHHHHHHHHHCCCeEEEEEeCCCcchhhhhhcCceEEEeccc----------hhHHHhhhhcC
Q 002535 146 QLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTG----------REKASFVNWLN 215 (911)
Q Consensus 146 rIalI~~~L~~GGae~~v~~LAk~L~~~GyeV~V~t~~~g~~~~~~~~~gi~v~~l~~~----------~~l~~lI~~~k 215 (911)
||+++.... +.++.++++.|.+.||+|.+++..++. .......++.+..++.. ..+.+.++..+
T Consensus 1 KIl~i~~~~-----~~~~~~~~~~L~~~g~~V~ii~~~~~~-~~~~~~~~i~~~~~~~~~k~~~~~~~~~~l~k~ik~~~ 74 (139)
T PF13477_consen 1 KILLIGNTP-----STFIYNLAKELKKRGYDVHIITPRNDY-EKYEIIEGIKVIRLPSPRKSPLNYIKYFRLRKIIKKEK 74 (139)
T ss_pred CEEEEecCc-----HHHHHHHHHHHHHCCCEEEEEEcCCCc-hhhhHhCCeEEEEecCCCCccHHHHHHHHHHHHhccCC
Confidence 355555544 457889999999999999999996543 22223445554444311 13455677889
Q ss_pred ccEEEEcCcchhHHHHHHhhCCCCC-CCEEEEEcCchh
Q 002535 216 YDGILVNSLEAKVVISNIMQEPFKS-LPLVWTIHEGTL 252 (911)
Q Consensus 216 pDIIhvhs~~~~~~ia~L~~~~~~g-iPvV~tiH~~~L 252 (911)
||+||+|.......++.++.+ ..+ +|+|++.|+...
T Consensus 75 ~DvIh~h~~~~~~~~~~l~~~-~~~~~~~i~~~hg~~~ 111 (139)
T PF13477_consen 75 PDVIHCHTPSPYGLFAMLAKK-LLKNKKVIYTVHGSDF 111 (139)
T ss_pred CCEEEEecCChHHHHHHHHHH-HcCCCCEEEEecCCee
Confidence 999999998764466666654 444 899999998533
No 120
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=98.02 E-value=0.0007 Score=76.39 Aligned_cols=317 Identities=12% Similarity=0.075 Sum_probs=170.8
Q ss_pred CEEEEEeCCCCCChHHHHHHHHHHHHHHCCCeEEEEEeCCCcchh----------hhhhcCceEEEecc-------chhH
Q 002535 145 PQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHE----------VWRNIGVPVAILQT-------GREK 207 (911)
Q Consensus 145 prIalI~~~L~~GGae~~v~~LAk~L~~~GyeV~V~t~~~g~~~~----------~~~~~gi~v~~l~~-------~~~l 207 (911)
++|+++.+..+.+ .+.-.+.++|+++--++..+...+..... ...-+|+. ..++. .+.+
T Consensus 2 ~ki~i~AGE~SGD---llGa~LikaLk~~~~~~efvGvgG~~m~aeG~~sl~~~~elsvmGf~-EVL~~lp~llk~~~~~ 77 (381)
T COG0763 2 LKIALSAGEASGD---LLGAGLIKALKARYPDVEFVGVGGEKMEAEGLESLFDMEELSVMGFV-EVLGRLPRLLKIRREL 77 (381)
T ss_pred ceEEEEecccchh---hHHHHHHHHHHhhCCCeEEEEeccHHHHhccCccccCHHHHHHhhHH-HHHHHHHHHHHHHHHH
Confidence 5788887776543 44556788888764488887766432211 11112211 11111 1222
Q ss_pred HHhhhhcCccEEEEcC-cchhHHHHHHhhCCCCCCCEEEEEcCchhhHHH--HHHHhhcchhhHhhHHHHHhhcceEEec
Q 002535 208 ASFVNWLNYDGILVNS-LEAKVVISNIMQEPFKSLPLVWTIHEGTLATRA--RNYASSGQLELLNDWKKVFNRATVVVFP 284 (911)
Q Consensus 208 ~~lI~~~kpDIIhvhs-~~~~~~ia~L~~~~~~giPvV~tiH~~~L~~~l--~k~~~~~~d~lIs~~~~~~~~a~~vvfp 284 (911)
.+.+...+||++++-. +...--++..+.+...++|+|+.+--..+..+- .....+..|.+.+ ++|
T Consensus 78 ~~~i~~~kpD~~i~IDsPdFnl~vak~lrk~~p~i~iihYV~PsVWAWr~~Ra~~i~~~~D~lLa------------ilP 145 (381)
T COG0763 78 VRYILANKPDVLILIDSPDFNLRVAKKLRKAGPKIKIIHYVSPSVWAWRPKRAVKIAKYVDHLLA------------ILP 145 (381)
T ss_pred HHHHHhcCCCEEEEeCCCCCchHHHHHHHHhCCCCCeEEEECcceeeechhhHHHHHHHhhHeee------------ecC
Confidence 3334458999887654 433323444444445568888766543332111 1122333444322 223
Q ss_pred CCccccccccCCCCCEEEeCCCCCCcccccccCchhhHHHHHhhCCCCCCe-EEEEEEeccccccccccHHHHHHHHHHh
Q 002535 285 DYVLPMMYSAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDL-VIAIVGTQFMYRGLWLEHALILRALLPL 363 (911)
Q Consensus 285 n~~l~ii~~~id~~ki~VIpg~gVD~~~f~~~~~~~k~~lR~~lgi~~d~~-vIL~VGsrl~~~KGiKg~dlLLeAl~~L 363 (911)
-+.-.....+. ...+|-..-.|. .++ ...++..|++++++.+.. +.+..|||-..- -+....+++|+..|
T Consensus 146 FE~~~y~k~g~---~~~yVGHpl~d~---i~~-~~~r~~ar~~l~~~~~~~~lalLPGSR~sEI--~rl~~~f~~a~~~l 216 (381)
T COG0763 146 FEPAFYDKFGL---PCTYVGHPLADE---IPL-LPDREAAREKLGIDADEKTLALLPGSRRSEI--RRLLPPFVQAAQEL 216 (381)
T ss_pred CCHHHHHhcCC---CeEEeCChhhhh---ccc-cccHHHHHHHhCCCCCCCeEEEecCCcHHHH--HHHHHHHHHHHHHH
Confidence 11111111111 133333211222 111 223566899999887654 455667665542 24557788999999
Q ss_pred hhhcccCCCCCCCEEEEEEeCCCCCchHHHHHHHHHHcCCCCccEEEccccccHHHHHHHcCeeEEcccCCcCCccHHHH
Q 002535 364 FSEVSVENESNSPIKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILV 443 (911)
Q Consensus 364 ~~~~p~~~~~~~~vkLvIVGG~~~e~Y~~~Le~la~~lgL~~~~V~flG~v~dV~~~L~~ADVfVlPS~~E~qGFplvLL 443 (911)
..++|+ .++++---+.. |.....+..+...... .+... ..+-.+.+.+||+.+..| |.+.+
T Consensus 217 ~~~~~~-------~~~vlp~~~~~--~~~~~~~~~~~~~~~~-~~~~~--~~~~~~a~~~aD~al~aS-------GT~tL 277 (381)
T COG0763 217 KARYPD-------LKFVLPLVNAK--YRRIIEEALKWEVAGL-SLILI--DGEKRKAFAAADAALAAS-------GTATL 277 (381)
T ss_pred HhhCCC-------ceEEEecCcHH--HHHHHHHHhhccccCc-eEEec--CchHHHHHHHhhHHHHhc-------cHHHH
Confidence 988888 89988763221 2233333333222211 22222 236778999999999887 67999
Q ss_pred HHHHcCCCEEecCC-----------------CccccccccCcc--EEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHH
Q 002535 444 KALCFRKPIIAPDL-----------------SNIRKYVDDRVN--GYLFPKENIKALTHIILQVITNGKISPFARNIASI 504 (911)
Q Consensus 444 EAMA~G~PVIaTd~-----------------gGi~EiV~dg~n--GlLv~~~D~eaLAeaI~~LLsd~~~p~~~~~mg~~ 504 (911)
|+|.+|+|.|++.. -+.+.++.+... =++-..-.++.+++++..++.| +..+.++.+.
T Consensus 278 E~aL~g~P~Vv~Yk~~~it~~iak~lvk~~yisLpNIi~~~~ivPEliq~~~~pe~la~~l~~ll~~---~~~~~~~~~~ 354 (381)
T COG0763 278 EAALAGTPMVVAYKVKPITYFIAKRLVKLPYVSLPNILAGREIVPELIQEDCTPENLARALEELLLN---GDRREALKEK 354 (381)
T ss_pred HHHHhCCCEEEEEeccHHHHHHHHHhccCCcccchHHhcCCccchHHHhhhcCHHHHHHHHHHHhcC---hHhHHHHHHH
Confidence 99999999887532 233344433210 0111123589999999999999 6555555554
Q ss_pred HHHH
Q 002535 505 GRRS 508 (911)
Q Consensus 505 ar~~ 508 (911)
..+.
T Consensus 355 ~~~l 358 (381)
T COG0763 355 FREL 358 (381)
T ss_pred HHHH
Confidence 4433
No 121
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=98.00 E-value=0.00069 Score=73.22 Aligned_cols=293 Identities=15% Similarity=0.109 Sum_probs=155.2
Q ss_pred CEEEEEeCC-CCCC-hHHHHHHHHHHHHHHCCCeEEEEEeCCCc--chhhhhhcCceEEEeccchhHHHhhhhcCccEEE
Q 002535 145 PQLALVFPD-LLID-PQQLQMVTIAIALREIGYAIQVYSLEDGR--AHEVWRNIGVPVAILQTGREKASFVNWLNYDGIL 220 (911)
Q Consensus 145 prIalI~~~-L~~G-Gae~~v~~LAk~L~~~GyeV~V~t~~~g~--~~~~~~~~gi~v~~l~~~~~l~~lI~~~kpDIIh 220 (911)
++|++++.+ ...| |.-.....||++|.+.|.++..++..+.+ ....++...+... .. ...++..++|+++
T Consensus 1 M~V~i~~Dgg~~iGmGHV~R~l~LA~~l~k~~~~~~fl~k~~~e~~~~~~~~~f~~~~~--~~----~n~ik~~k~d~lI 74 (318)
T COG3980 1 MKVLIRCDGGLEIGMGHVMRTLTLARELEKRGFACLFLTKQDIEAIIHKVYEGFKVLEG--RG----NNLIKEEKFDLLI 74 (318)
T ss_pred CcEEEEecCCcccCcchhhhHHHHHHHHHhcCceEEEecccchhhhhhhhhhhccceee--ec----ccccccccCCEEE
Confidence 356666644 4444 66778999999999999888888765522 2223333332221 11 1156788999999
Q ss_pred EcCcchhHHHHHHhhCCCCCCCEEEEEcCchhhHHHHHHHhhcchhhHhhHHHHHhhcceEEecCCccccccccCCCCCE
Q 002535 221 VNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRATVVVFPDYVLPMMYSAFDAGNY 300 (911)
Q Consensus 221 vhs~~~~~~ia~L~~~~~~giPvV~tiH~~~L~~~l~k~~~~~~d~lIs~~~~~~~~a~~vvfpn~~l~ii~~~id~~ki 300 (911)
..+.....-...++.. ..+.|+++.-....- .+ ...+.++...... .+.. ..-+.+.
T Consensus 75 ~Dsygl~~dd~k~ik~-e~~~k~l~fDd~~~~--~~-----~d~d~ivN~~~~a---~~~y------------~~v~~k~ 131 (318)
T COG3980 75 FDSYGLNADDFKLIKE-EAGSKILIFDDENAK--SF-----KDNDLIVNAILNA---NDYY------------GLVPNKT 131 (318)
T ss_pred EeccCCCHHHHHHHHH-HhCCcEEEecCCCcc--ch-----hhhHhhhhhhhcc---hhhc------------cccCcce
Confidence 9887765445555531 234565543221111 00 0111111111110 0100 1112333
Q ss_pred EEeCCCCCCcccccccCchhhHHHHHhhCCCCCCeEEEEEEeccccccccccHHHHHHHHHHhhhhcccCCCCCCCEEEE
Q 002535 301 YVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVM 380 (911)
Q Consensus 301 ~VIpg~gVD~~~f~~~~~~~k~~lR~~lgi~~d~~vIL~VGsrl~~~KGiKg~dlLLeAl~~L~~~~p~~~~~~~~vkLv 380 (911)
.+.-|+ +. .+..+. -..+|++.-..+..-+++..|+ ..+ |++ .++.++.|.+.. +.+.
T Consensus 132 ~~~lGp--~y---~~lr~e-F~~~r~~~~~r~~r~ilI~lGG-sDp----k~l--t~kvl~~L~~~~---------~nl~ 189 (318)
T COG3980 132 RYYLGP--GY---APLRPE-FYALREENTERPKRDILITLGG-SDP----KNL--TLKVLAELEQKN---------VNLH 189 (318)
T ss_pred EEEecC--Cc---eeccHH-HHHhHHHHhhcchheEEEEccC-CCh----hhh--HHHHHHHhhccC---------eeEE
Confidence 333321 11 111111 1233333333333336666663 344 443 677777777653 4454
Q ss_pred EEeCCCCCchHHHHHHHHHHcCCCCccEEEccccccHHHHHHHcCeeEEcccCCcCCccHHHHHHHHcCCCE--E--ecC
Q 002535 381 ILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPI--I--APD 456 (911)
Q Consensus 381 IVGG~~~e~Y~~~Le~la~~lgL~~~~V~flG~v~dV~~~L~~ADVfVlPS~~E~qGFplvLLEAMA~G~PV--I--aTd 456 (911)
||-|...+. ...+++.++ ..+ ++.++-..+|+.+++..||+.|... |.++.||...|+|. | +.+
T Consensus 190 iV~gs~~p~-l~~l~k~~~---~~~-~i~~~~~~~dma~LMke~d~aI~Aa-------GstlyEa~~lgvP~l~l~~a~N 257 (318)
T COG3980 190 IVVGSSNPT-LKNLRKRAE---KYP-NINLYIDTNDMAELMKEADLAISAA-------GSTLYEALLLGVPSLVLPLAEN 257 (318)
T ss_pred EEecCCCcc-hhHHHHHHh---hCC-CeeeEecchhHHHHHHhcchheecc-------chHHHHHHHhcCCceEEeeecc
Confidence 444422211 144445554 333 5888878889999999999999543 78999999999993 3 233
Q ss_pred CCccccccccCccEEEEcC---CCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 002535 457 LSNIRKYVDDRVNGYLFPK---ENIKALTHIILQVITNGKISPFARNIASIG 505 (911)
Q Consensus 457 ~gGi~EiV~dg~nGlLv~~---~D~eaLAeaI~~LLsd~~~p~~~~~mg~~a 505 (911)
.-......+. -|+.... -...+....+.++.+| ...+..+....
T Consensus 258 Q~~~a~~f~~--lg~~~~l~~~l~~~~~~~~~~~i~~d---~~~rk~l~~~~ 304 (318)
T COG3980 258 QIATAKEFEA--LGIIKQLGYHLKDLAKDYEILQIQKD---YARRKNLSFGS 304 (318)
T ss_pred HHHHHHHHHh--cCchhhccCCCchHHHHHHHHHhhhC---HHHhhhhhhcc
Confidence 2222222211 1222222 2467788888889999 77777665443
No 122
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=97.99 E-value=4.1e-05 Score=86.81 Aligned_cols=255 Identities=15% Similarity=0.128 Sum_probs=131.5
Q ss_pred HHHhhhhcCccEEEEcCcchhHHHHHHhhCCCCCCCEEEEEcCc----hhhHHHHHHHhhcchhhHhhHHHHHh-hcceE
Q 002535 207 KASFVNWLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEG----TLATRARNYASSGQLELLNDWKKVFN-RATVV 281 (911)
Q Consensus 207 l~~lI~~~kpDIIhvhs~~~~~~ia~L~~~~~~giPvV~tiH~~----~L~~~l~k~~~~~~d~lIs~~~~~~~-~a~~v 281 (911)
+...+...+||+|+++.-....+.+.+++. ..++| |.++|+. ..... ..+.. .+.... .++..
T Consensus 59 ~~~~~~~~~Pd~Vlv~GD~~~~la~alaA~-~~~ip-v~HieaGlRs~d~~~g-------~~de~---~R~~i~~la~lh 126 (346)
T PF02350_consen 59 LADVLEREKPDAVLVLGDRNEALAAALAAF-YLNIP-VAHIEAGLRSGDRTEG-------MPDEI---NRHAIDKLAHLH 126 (346)
T ss_dssp HHHHHHHHT-SEEEEETTSHHHHHHHHHHH-HTT-E-EEEES-----S-TTSS-------TTHHH---HHHHHHHH-SEE
T ss_pred HHHHHHhcCCCEEEEEcCCchHHHHHHHHH-HhCCC-EEEecCCCCccccCCC-------Cchhh---hhhhhhhhhhhh
Confidence 445577789999999998775444455543 67899 5577764 22100 01111 111111 12222
Q ss_pred EecCCc--cccccccCCCCCEEEeCCCCCCcccccccCchhhHHH-HHhhCCCCCCeEEEEEEeccccccccccHHHHHH
Q 002535 282 VFPDYV--LPMMYSAFDAGNYYVIPGSPAKAWEADTNMDLYNDTV-RVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILR 358 (911)
Q Consensus 282 vfpn~~--l~ii~~~id~~ki~VIpg~gVD~~~f~~~~~~~k~~l-R~~lgi~~d~~vIL~VGsrl~~~KGiKg~dlLLe 358 (911)
..++.. ..++..+.+..+++++-+.++|.-... .+...... .........+.++++..-+.....-......+.+
T Consensus 127 f~~t~~~~~~L~~~G~~~~rI~~vG~~~~D~l~~~--~~~~~~~~~~~~i~~~~~~~~iLvt~H~~t~~~~~~~~~~i~~ 204 (346)
T PF02350_consen 127 FAPTEEARERLLQEGEPPERIFVVGNPGIDALLQN--KEEIEEKYKNSGILQDAPKPYILVTLHPVTNEDNPERLEQILE 204 (346)
T ss_dssp EESSHHHHHHHHHTT--GGGEEE---HHHHHHHHH--HHTTCC-HHHHHHHHCTTSEEEEEE-S-CCCCTHH--HHHHHH
T ss_pred ccCCHHHHHHHHhcCCCCCeEEEEChHHHHHHHHh--HHHHhhhhhhHHHHhccCCCEEEEEeCcchhcCChHHHHHHHH
Confidence 222222 334456777788888865555542100 00001111 1111001344455555423333211234567788
Q ss_pred HHHHhhhhcccCCCCCCCEEEEEEeCCCCCchHHHHHHHHHHcCCCCccEEEcccc--ccHHHHHHHcCeeEEcccCCcC
Q 002535 359 ALLPLFSEVSVENESNSPIKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAE--GDVDSVLNTADVVIYGSFLEEQ 436 (911)
Q Consensus 359 Al~~L~~~~p~~~~~~~~vkLvIVGG~~~e~Y~~~Le~la~~lgL~~~~V~flG~v--~dV~~~L~~ADVfVlPS~~E~q 436 (911)
++..|.+. ++ +.+++...+.. .....+.+..++ + + ++.+.... .++..+++.|+++|.=|
T Consensus 205 ~l~~L~~~-~~-------~~vi~~~hn~p-~~~~~i~~~l~~--~-~-~v~~~~~l~~~~~l~ll~~a~~vvgdS----- 266 (346)
T PF02350_consen 205 ALKALAER-QN-------VPVIFPLHNNP-RGSDIIIEKLKK--Y-D-NVRLIEPLGYEEYLSLLKNADLVVGDS----- 266 (346)
T ss_dssp HHHHHHHH-TT-------EEEEEE--S-H-HHHHHHHHHHTT----T-TEEEE----HHHHHHHHHHESEEEESS-----
T ss_pred HHHHHHhc-CC-------CcEEEEecCCc-hHHHHHHHHhcc--c-C-CEEEECCCCHHHHHHHHhcceEEEEcC-----
Confidence 88888776 44 78888885332 233444444442 3 3 58888766 78899999999998655
Q ss_pred CccHHHH-HHHHcCCCEEec-CCCccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHH
Q 002535 437 TFPEILV-KALCFRKPIIAP-DLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNI 501 (911)
Q Consensus 437 GFplvLL-EAMA~G~PVIaT-d~gGi~EiV~dg~nGlLv~~~D~eaLAeaI~~LLsd~~~p~~~~~m 501 (911)
| .+. ||.++|+|||.- +.|.-++.+..+.+-+ ++ .|++++.++|.+++++ +....++
T Consensus 267 --s-GI~eEa~~lg~P~v~iR~~geRqe~r~~~~nvl-v~-~~~~~I~~ai~~~l~~---~~~~~~~ 325 (346)
T PF02350_consen 267 --S-GIQEEAPSLGKPVVNIRDSGERQEGRERGSNVL-VG-TDPEAIIQAIEKALSD---KDFYRKL 325 (346)
T ss_dssp --H-HHHHHGGGGT--EEECSSS-S-HHHHHTTSEEE-ET-SSHHHHHHHHHHHHH----HHHHHHH
T ss_pred --c-cHHHHHHHhCCeEEEecCCCCCHHHHhhcceEE-eC-CCHHHHHHHHHHHHhC---hHHHHhh
Confidence 4 555 999999999997 4455567777666544 76 7999999999999987 5555554
No 123
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=97.97 E-value=0.00037 Score=78.76 Aligned_cols=339 Identities=12% Similarity=0.079 Sum_probs=184.7
Q ss_pred CCEEEEEeCCCCCChHHHHHHHHHHHHHHCC-CeEEEEEeCC-C--cch-hhhhhcCce--EEEeccc------------
Q 002535 144 KPQLALVFPDLLIDPQQLQMVTIAIALREIG-YAIQVYSLED-G--RAH-EVWRNIGVP--VAILQTG------------ 204 (911)
Q Consensus 144 kprIalI~~~L~~GGae~~v~~LAk~L~~~G-yeV~V~t~~~-g--~~~-~~~~~~gi~--v~~l~~~------------ 204 (911)
+.||++|++.- +--.-+.-+.+++.+.+ .+..|+..+- - +.. ...+.++++ -+.+...
T Consensus 3 ~~Kv~~I~GTR---PE~iKmapli~~~~~~~~~~~~vi~TGQH~d~em~~~~le~~~i~~pdy~L~i~~~~~tl~~~t~~ 79 (383)
T COG0381 3 MLKVLTIFGTR---PEAIKMAPLVKALEKDPDFELIVIHTGQHRDYEMLDQVLELFGIRKPDYDLNIMKPGQTLGEITGN 79 (383)
T ss_pred ceEEEEEEecC---HHHHHHhHHHHHHHhCCCCceEEEEecccccHHHHHHHHHHhCCCCCCcchhccccCCCHHHHHHH
Confidence 46777777642 23334566778888876 6766665432 1 111 122333333 1111111
Q ss_pred --hhHHHhhhhcCccEEEEcCcchhHHHHHHhhCCCCCCCEEEEEcCchhhHH-H-HHHHhhcchhhHhhHHHHHhhcce
Q 002535 205 --REKASFVNWLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATR-A-RNYASSGQLELLNDWKKVFNRATV 280 (911)
Q Consensus 205 --~~l~~lI~~~kpDIIhvhs~~~~~~ia~L~~~~~~giPvV~tiH~~~L~~~-l-~k~~~~~~d~lIs~~~~~~~~a~~ 280 (911)
..+..++...+||+|.+|.-....+.+++++. +.++|+...--|.-.+.. + +....+..+.+ + +.
T Consensus 80 ~i~~~~~vl~~~kPD~VlVhGDT~t~lA~alaa~-~~~IpV~HvEAGlRt~~~~~PEE~NR~l~~~~-S---------~~ 148 (383)
T COG0381 80 IIEGLSKVLEEEKPDLVLVHGDTNTTLAGALAAF-YLKIPVGHVEAGLRTGDLYFPEEINRRLTSHL-S---------DL 148 (383)
T ss_pred HHHHHHHHHHhhCCCEEEEeCCcchHHHHHHHHH-HhCCceEEEecccccCCCCCcHHHHHHHHHHh-h---------hh
Confidence 13455677899999999997774344355433 567887543332110000 0 11111111111 0 10
Q ss_pred EEecCCc--cccccccCCCCCEEEeCCCCCCcccccccCchhhHHHHHh-hCCCCCCeEEEEEEeccccccccccHHHHH
Q 002535 281 VVFPDYV--LPMMYSAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVK-MGFKPDDLVIAIVGTQFMYRGLWLEHALIL 357 (911)
Q Consensus 281 vvfpn~~--l~ii~~~id~~ki~VIpg~gVD~~~f~~~~~~~k~~lR~~-lgi~~d~~vIL~VGsrl~~~KGiKg~dlLL 357 (911)
...|+.. ......+++.++++++-+.-+|.-................ ++.+.++.+++..=++...+ +++..++
T Consensus 149 hfapte~ar~nLl~EG~~~~~IfvtGnt~iDal~~~~~~~~~~~~~~~~~~~~~~~~~iLvT~HRreN~~---~~~~~i~ 225 (383)
T COG0381 149 HFAPTEIARKNLLREGVPEKRIFVTGNTVIDALLNTRDRVLEDSKILAKGLDDKDKKYILVTAHRRENVG---EPLEEIC 225 (383)
T ss_pred hcCChHHHHHHHHHcCCCccceEEeCChHHHHHHHHHhhhccchhhHHhhhccccCcEEEEEcchhhccc---ccHHHHH
Confidence 1111111 2233456667778887754455422110001101112222 44444444444444444443 7888889
Q ss_pred HHHHHhhhhcccCCCCCCCEEEEEEeCCCCCchHHHHHHHH-HHcCCCCccEEEcccc--ccHHHHHHHcCeeEEcccCC
Q 002535 358 RALLPLFSEVSVENESNSPIKVMILSGDSTSNYSVVIEAIA-HNLHYPLGVVKHMAAE--GDVDSVLNTADVVIYGSFLE 434 (911)
Q Consensus 358 eAl~~L~~~~p~~~~~~~~vkLvIVGG~~~e~Y~~~Le~la-~~lgL~~~~V~flG~v--~dV~~~L~~ADVfVlPS~~E 434 (911)
+|+.++..++++ +.++.---+. ..+++.. ..++-.+ +|+++.+. .+...++..|-+++.=|
T Consensus 226 ~al~~i~~~~~~-------~~viyp~H~~-----~~v~e~~~~~L~~~~-~v~li~pl~~~~f~~L~~~a~~iltDS--- 289 (383)
T COG0381 226 EALREIAEEYPD-------VIVIYPVHPR-----PRVRELVLKRLKNVE-RVKLIDPLGYLDFHNLMKNAFLILTDS--- 289 (383)
T ss_pred HHHHHHHHhCCC-------ceEEEeCCCC-----hhhhHHHHHHhCCCC-cEEEeCCcchHHHHHHHHhceEEEecC---
Confidence 999999998876 5555544322 3344444 4444444 68888876 67788888887777555
Q ss_pred cCCccHHHHHHHHcCCCEEecCCC-ccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhcC
Q 002535 435 EQTFPEILVKALCFRKPIIAPDLS-NIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSVKNLM 513 (911)
Q Consensus 435 ~qGFplvLLEAMA~G~PVIaTd~g-Gi~EiV~dg~nGlLv~~~D~eaLAeaI~~LLsd~~~p~~~~~mg~~ar~~ae~Fs 513 (911)
|...=||-..|+||++-..+ .-+|-++.| +-.++. .+.+.+.+++..++++ ++..++|+.....+..-..
T Consensus 290 ----GgiqEEAp~lg~Pvl~lR~~TERPE~v~ag-t~~lvg-~~~~~i~~~~~~ll~~---~~~~~~m~~~~npYgdg~a 360 (383)
T COG0381 290 ----GGIQEEAPSLGKPVLVLRDTTERPEGVEAG-TNILVG-TDEENILDAATELLED---EEFYERMSNAKNPYGDGNA 360 (383)
T ss_pred ----CchhhhHHhcCCcEEeeccCCCCccceecC-ceEEeC-ccHHHHHHHHHHHhhC---hHHHHHHhcccCCCcCcch
Confidence 33445999999999886543 456766654 345665 4789999999999999 8888888655333332224
Q ss_pred HHHHHHHHHHH
Q 002535 514 ALETIEGYAML 524 (911)
Q Consensus 514 ~e~ia~~y~~L 524 (911)
.+++++...+.
T Consensus 361 s~rIv~~l~~~ 371 (383)
T COG0381 361 SERIVEILLNY 371 (383)
T ss_pred HHHHHHHHHHH
Confidence 44444444433
No 124
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=97.96 E-value=0.0086 Score=71.53 Aligned_cols=164 Identities=13% Similarity=0.110 Sum_probs=97.3
Q ss_pred CCCeEEEEEEecccccccc-ccHHHHHHHHHHhhhhcccCCCCCCCEEEEEEeCCCCCchHHHHHHHHHHcCCCCccEEE
Q 002535 332 PDDLVIAIVGTQFMYRGLW-LEHALILRALLPLFSEVSVENESNSPIKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKH 410 (911)
Q Consensus 332 ~d~~vIL~VGsrl~~~KGi-Kg~dlLLeAl~~L~~~~p~~~~~~~~vkLvIVGG~~~e~Y~~~Le~la~~lgL~~~~V~f 410 (911)
++..+++.+|+.....+.. .-...+++|++.+. .++++..+.... . .++++ +|.+
T Consensus 295 ~~g~V~vS~GS~~~~~~~~~~~~~~~l~a~~~l~------------~~viw~~~~~~~---~--------~~~p~-Nv~i 350 (507)
T PHA03392 295 TNGVVYVSFGSSIDTNDMDNEFLQMLLRTFKKLP------------YNVLWKYDGEVE---A--------INLPA-NVLT 350 (507)
T ss_pred CCcEEEEECCCCCcCCCCCHHHHHHHHHHHHhCC------------CeEEEEECCCcC---c--------ccCCC-ceEE
Confidence 3356778888654321111 23355566665543 365555532210 0 14555 7999
Q ss_pred ccccccHHHHH--HHcCeeEEcccCCcCCccHHHHHHHHcCCCEEecCCCc----cccccccCccEEEEcCC--CHHHHH
Q 002535 411 MAAEGDVDSVL--NTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSN----IRKYVDDRVNGYLFPKE--NIKALT 482 (911)
Q Consensus 411 lG~v~dV~~~L--~~ADVfVlPS~~E~qGFplvLLEAMA~G~PVIaTd~gG----i~EiV~dg~nGlLv~~~--D~eaLA 482 (911)
.++.. ..+++ ..+++||.-. -..++.||+.+|+|+|+-...+ ....+.....|..++.. +.+++.
T Consensus 351 ~~w~P-q~~lL~hp~v~~fItHG------G~~s~~Eal~~GvP~v~iP~~~DQ~~Na~rv~~~G~G~~l~~~~~t~~~l~ 423 (507)
T PHA03392 351 QKWFP-QRAVLKHKNVKAFVTQG------GVQSTDEAIDALVPMVGLPMMGDQFYNTNKYVELGIGRALDTVTVSAAQLV 423 (507)
T ss_pred ecCCC-HHHHhcCCCCCEEEecC------CcccHHHHHHcCCCEEECCCCccHHHHHHHHHHcCcEEEeccCCcCHHHHH
Confidence 88874 35677 4588888543 3668899999999999976543 33444444458777653 578999
Q ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHhcCC
Q 002535 483 HIILQVITNGKISPFARNIASIGRRSVKN-LMALETIEGYAMLLENVLKLP 532 (911)
Q Consensus 483 eaI~~LLsd~~~p~~~~~mg~~ar~~ae~-Fs~e~ia~~y~~Lye~vL~~p 532 (911)
++|.++++| +..+++..+-++....+ .+..+.+ ...+|.+++.+
T Consensus 424 ~ai~~vl~~---~~y~~~a~~ls~~~~~~p~~~~~~a---v~~iE~v~r~~ 468 (507)
T PHA03392 424 LAIVDVIEN---PKYRKNLKELRHLIRHQPMTPLHKA---IWYTEHVIRNK 468 (507)
T ss_pred HHHHHHhCC---HHHHHHHHHHHHHHHhCCCCHHHHH---HHHHHHHHhCC
Confidence 999999999 66655554444433322 3333333 33345556554
No 125
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=97.95 E-value=0.0028 Score=75.92 Aligned_cols=318 Identities=9% Similarity=0.026 Sum_probs=167.9
Q ss_pred CCCCCEEEEEeCCCCCChHHHHHHHHHHHHHHCCCeEEEEEeCCCcchhh----------hhhcCceEEEecc-------
Q 002535 141 GYRKPQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEV----------WRNIGVPVAILQT------- 203 (911)
Q Consensus 141 ~~rkprIalI~~~L~~GGae~~v~~LAk~L~~~GyeV~V~t~~~g~~~~~----------~~~~gi~v~~l~~------- 203 (911)
....+++.++.+..+. ..+.-.++++|+++.-++.+...++...... ..-.|+ +..++.
T Consensus 223 ~~~~~kIfI~AGE~SG---DlhgA~Li~aLk~~~P~i~~~GvGG~~M~aaG~e~l~d~~eLsVmG~-~EVL~~l~~l~~~ 298 (608)
T PRK01021 223 PFSNTSCFISAGEHSG---DTLGGNLLKEIKALYPDIHCFGVGGPQMRAEGFHPLFNMEEFQVSGF-WEVLLALFKLWYR 298 (608)
T ss_pred cccCCeEEEEeccccH---HHHHHHHHHHHHhcCCCcEEEEEccHHHHhCcCcccCChHHhhhhhH-HHHHHHHHHHHHH
Confidence 3445788888887653 3566788999999888888887765332211 011111 111111
Q ss_pred chhHHHhhhhcCccEEEEcC-cchhHHHHHHhhCCCCCCCEEEEEcCchhh---HHHHHHHhhcchhhHhhHHHHHhhcc
Q 002535 204 GREKASFVNWLNYDGILVNS-LEAKVVISNIMQEPFKSLPLVWTIHEGTLA---TRARNYASSGQLELLNDWKKVFNRAT 279 (911)
Q Consensus 204 ~~~l~~lI~~~kpDIIhvhs-~~~~~~ia~L~~~~~~giPvV~tiH~~~L~---~~l~k~~~~~~d~lIs~~~~~~~~a~ 279 (911)
.+.+.+.+...+||++++-. +...--++..+.+...++|+|+.+--..+. .+. +...+..|.+++
T Consensus 299 ~~~l~~~i~~~kPD~vIlID~PgFNlrLAK~lkk~Gi~ipviyYVsPqVWAWR~~Ri-kki~k~vD~ll~---------- 367 (608)
T PRK01021 299 YRKLYKTILKTNPRTVICIDFPDFHFLLIKKLRKRGYKGKIVHYVCPSIWAWRPKRK-TILEKYLDLLLL---------- 367 (608)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCHHHHHHHHhcCCCCCEEEEECccceeeCcchH-HHHHHHhhhhee----------
Confidence 12233445668999988744 444323555553322224888766532222 122 122333344332
Q ss_pred eEEecCCccccccccCCCCCEEEeCCCCCCcccccccCchhhHHHHHhhCCCCC-CeEEEEEEeccccccccccHHHHHH
Q 002535 280 VVVFPDYVLPMMYSAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPD-DLVIAIVGTQFMYRGLWLEHALILR 358 (911)
Q Consensus 280 ~vvfpn~~l~ii~~~id~~ki~VIpg~gVD~~~f~~~~~~~k~~lR~~lgi~~d-~~vIL~VGsrl~~~KGiKg~dlLLe 358 (911)
+||=+.......+ -+..++-+.-+|.- . ....+.+.+++++++++ +.+.+.-|||..+- .+....+++
T Consensus 368 --IfPFE~~~y~~~g---v~v~yVGHPL~d~i--~--~~~~~~~~r~~lgl~~~~~iIaLLPGSR~~EI--~rllPv~l~ 436 (608)
T PRK01021 368 --ILPFEQNLFKDSP---LRTVYLGHPLVETI--S--SFSPNLSWKEQLHLPSDKPIVAAFPGSRRGDI--LRNLTIQVQ 436 (608)
T ss_pred --cCccCHHHHHhcC---CCeEEECCcHHhhc--c--cCCCHHHHHHHcCCCCCCCEEEEECCCCHHHH--HHHHHHHHH
Confidence 2221111110111 23334432122320 1 11224567888898755 44556678776442 145567777
Q ss_pred HHH--HhhhhcccCCCCCCCEEEEEEeCCCCCchHHHHHHHHHHcCCCCccEEEccccccHHHHHHHcCeeEEcccCCcC
Q 002535 359 ALL--PLFSEVSVENESNSPIKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNTADVVIYGSFLEEQ 436 (911)
Q Consensus 359 Al~--~L~~~~p~~~~~~~~vkLvIVGG~~~e~Y~~~Le~la~~lgL~~~~V~flG~v~dV~~~L~~ADVfVlPS~~E~q 436 (911)
|+. .+.+ + .++++...+.. +.+.+++..+..++.+ +.+... ++-.+++++||+.+..|
T Consensus 437 aa~~~~l~~---~-------l~fvvp~a~~~--~~~~i~~~~~~~~~~~--~~ii~~-~~~~~~m~aaD~aLaaS----- 496 (608)
T PRK01021 437 AFLASSLAS---T-------HQLLVSSANPK--YDHLILEVLQQEGCLH--SHIVPS-QFRYELMRECDCALAKC----- 496 (608)
T ss_pred HHHHHHhcc---C-------eEEEEecCchh--hHHHHHHHHhhcCCCC--eEEecC-cchHHHHHhcCeeeecC-----
Confidence 776 4433 2 67777553221 2355666655333211 333321 13479999999999888
Q ss_pred CccHHHHHHHHcCCCEEecCCC-------------------ccccccccCc-cEEEE---cCCCHHHHHHHHHHHHHcCC
Q 002535 437 TFPEILVKALCFRKPIIAPDLS-------------------NIRKYVDDRV-NGYLF---PKENIKALTHIILQVITNGK 493 (911)
Q Consensus 437 GFplvLLEAMA~G~PVIaTd~g-------------------Gi~EiV~dg~-nGlLv---~~~D~eaLAeaI~~LLsd~~ 493 (911)
|.+-+||+.+|+|.|+.... +++.++.+.. ---+. +.-+++.+++++ +++.|
T Consensus 497 --GTaTLEaAL~g~PmVV~YK~s~Lty~Iak~Lvki~i~yIsLpNIIagr~VvPEllqgQ~~~tpe~La~~l-~lL~d-- 571 (608)
T PRK01021 497 --GTIVLETALNQTPTIVTCQLRPFDTFLAKYIFKIILPAYSLPNIILGSTIFPEFIGGKKDFQPEEVAAAL-DILKT-- 571 (608)
T ss_pred --CHHHHHHHHhCCCEEEEEecCHHHHHHHHHHHhccCCeeehhHHhcCCCcchhhcCCcccCCHHHHHHHH-HHhcC--
Confidence 78999999999998764322 2222232211 11122 344799999996 88888
Q ss_pred CcHHHHHHHHHHHHHHH
Q 002535 494 ISPFARNIASIGRRSVK 510 (911)
Q Consensus 494 ~p~~~~~mg~~ar~~ae 510 (911)
++.++++.+.-.+..+
T Consensus 572 -~~~r~~~~~~l~~lr~ 587 (608)
T PRK01021 572 -SQSKEKQKDACRDLYQ 587 (608)
T ss_pred -HHHHHHHHHHHHHHHH
Confidence 7766666555444333
No 126
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=97.95 E-value=0.00045 Score=78.96 Aligned_cols=296 Identities=14% Similarity=0.129 Sum_probs=161.2
Q ss_pred HHHHHHHHHHHHHHCCCeEEEEEeCCCcchh----------hhhhcCceEEEecc-------chhHHHhhhhcCccEEEE
Q 002535 159 QQLQMVTIAIALREIGYAIQVYSLEDGRAHE----------VWRNIGVPVAILQT-------GREKASFVNWLNYDGILV 221 (911)
Q Consensus 159 ae~~v~~LAk~L~~~GyeV~V~t~~~g~~~~----------~~~~~gi~v~~l~~-------~~~l~~lI~~~kpDIIhv 221 (911)
+..+.-.|+++|+++.-++.++..++..... ...-+|+ +..++. .+.+...+...+||+++.
T Consensus 10 GD~~ga~Li~~Lk~~~p~~~~~GvGG~~M~~~G~~~l~d~~~lsvmG~-~Evl~~l~~~~~~~~~~~~~~~~~~pd~vIl 88 (373)
T PF02684_consen 10 GDLHGARLIRALKARDPDIEFYGVGGPRMQAAGVESLFDMEELSVMGF-VEVLKKLPKLKRLFRKLVERIKEEKPDVVIL 88 (373)
T ss_pred HHHHHHHHHHHHHhhCCCcEEEEEechHHHhCCCceecchHHhhhccH-HHHHHHHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 3467788999999999889888876543321 1111121 011111 122333455689999876
Q ss_pred cCcc-hhHHHHHHhhCCCCCCCEEEEEcCchhh---HHHHHHHhhcchhhHhhHHHHHhhcceEEecCCccccccccCCC
Q 002535 222 NSLE-AKVVISNIMQEPFKSLPLVWTIHEGTLA---TRARNYASSGQLELLNDWKKVFNRATVVVFPDYVLPMMYSAFDA 297 (911)
Q Consensus 222 hs~~-~~~~ia~L~~~~~~giPvV~tiH~~~L~---~~l~k~~~~~~d~lIs~~~~~~~~a~~vvfpn~~l~ii~~~id~ 297 (911)
-... ..--++..+.+....+|+|+.+--..+. .+. +...+..|.++ .+||-+.......+
T Consensus 89 ID~pgFNlrlak~lk~~~~~~~viyYI~PqvWAWr~~R~-~~i~~~~D~ll------------~ifPFE~~~y~~~g--- 152 (373)
T PF02684_consen 89 IDYPGFNLRLAKKLKKRGIPIKVIYYISPQVWAWRPGRA-KKIKKYVDHLL------------VIFPFEPEFYKKHG--- 152 (373)
T ss_pred eCCCCccHHHHHHHHHhCCCceEEEEECCceeeeCccHH-HHHHHHHhhee------------ECCcccHHHHhccC---
Confidence 5543 3323444443333334477655532222 111 11223333332 22231111111111
Q ss_pred CCEEEeCCCCCCcccccccCchhhHHHHHhhCCCCCCe-EEEEEEeccccccccccHHHHHHHHHHhhhhcccCCCCCCC
Q 002535 298 GNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDL-VIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSP 376 (911)
Q Consensus 298 ~ki~VIpg~gVD~~~f~~~~~~~k~~lR~~lgi~~d~~-vIL~VGsrl~~~KGiKg~dlLLeAl~~L~~~~p~~~~~~~~ 376 (911)
-+..++-+.-+|.- ... ..+...++.+ ++++++ +.+.-|||-..- .+.+..+++++..+.+++|+
T Consensus 153 ~~~~~VGHPl~d~~--~~~--~~~~~~~~~~-l~~~~~iIaLLPGSR~~EI--~rllP~~l~aa~~l~~~~p~------- 218 (373)
T PF02684_consen 153 VPVTYVGHPLLDEV--KPE--PDRAEAREKL-LDPDKPIIALLPGSRKSEI--KRLLPIFLEAAKLLKKQRPD------- 218 (373)
T ss_pred CCeEEECCcchhhh--ccC--CCHHHHHHhc-CCCCCcEEEEeCCCCHHHH--HHHHHHHHHHHHHHHHhCCC-------
Confidence 23444433222221 111 1134445555 666555 556667766542 14558889999999999988
Q ss_pred EEEEEEeCCCCCchHHHHHHHHHHcCCCCccEEEccccccHHHHHHHcCeeEEcccCCcCCccHHHHHHHHcCCCEEecC
Q 002535 377 IKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPD 456 (911)
Q Consensus 377 vkLvIVGG~~~e~Y~~~Le~la~~lgL~~~~V~flG~v~dV~~~L~~ADVfVlPS~~E~qGFplvLLEAMA~G~PVIaTd 456 (911)
+++++...+.. +.+.+++..+..+... .+.. ...+-.+.+++||+.+..| |.+-+||+.+|+|.|+..
T Consensus 219 l~fvvp~a~~~--~~~~i~~~~~~~~~~~-~~~~--~~~~~~~~m~~ad~al~~S-------GTaTLE~Al~g~P~Vv~Y 286 (373)
T PF02684_consen 219 LQFVVPVAPEV--HEELIEEILAEYPPDV-SIVI--IEGESYDAMAAADAALAAS-------GTATLEAALLGVPMVVAY 286 (373)
T ss_pred eEEEEecCCHH--HHHHHHHHHHhhCCCC-eEEE--cCCchHHHHHhCcchhhcC-------CHHHHHHHHhCCCEEEEE
Confidence 89988873321 2234555555444332 2222 2357788999999999887 679999999999977643
Q ss_pred CC-----------------ccccccccCc--cEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHH
Q 002535 457 LS-----------------NIRKYVDDRV--NGYLFPKENIKALTHIILQVITNGKISPFARN 500 (911)
Q Consensus 457 ~g-----------------Gi~EiV~dg~--nGlLv~~~D~eaLAeaI~~LLsd~~~p~~~~~ 500 (911)
.. +++.++.+.. -=++-+.-+++.+++++..++.| ++.++.
T Consensus 287 k~~~lt~~iak~lvk~~~isL~Niia~~~v~PEliQ~~~~~~~i~~~~~~ll~~---~~~~~~ 346 (373)
T PF02684_consen 287 KVSPLTYFIAKRLVKVKYISLPNIIAGREVVPELIQEDATPENIAAELLELLEN---PEKRKK 346 (373)
T ss_pred cCcHHHHHHHHHhhcCCEeechhhhcCCCcchhhhcccCCHHHHHHHHHHHhcC---HHHHHH
Confidence 22 3334443221 01223345799999999999999 665443
No 127
>COG4641 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.93 E-value=0.0018 Score=72.80 Aligned_cols=327 Identities=14% Similarity=0.076 Sum_probs=182.4
Q ss_pred CCChHHHHHHHHHHHHHHCCCeEEEEEeCCCc---chhhhhhcCceEEEec--cchhHHHhhhhcCccEEEEcCcch---
Q 002535 155 LIDPQQLQMVTIAIALREIGYAIQVYSLEDGR---AHEVWRNIGVPVAILQ--TGREKASFVNWLNYDGILVNSLEA--- 226 (911)
Q Consensus 155 ~~GGae~~v~~LAk~L~~~GyeV~V~t~~~g~---~~~~~~~~gi~v~~l~--~~~~l~~lI~~~kpDIIhvhs~~~--- 226 (911)
..+|......-+.+.|...||++..+-..+.- ..+.+...+....... ........++..++|+|.......
T Consensus 12 y~~~~~~~~~~~~~~l~~~g~kvlflE~~~~~~~k~rd~~~~~~~~~~~~~~~~e~~~~~~i~~fk~d~iv~~~~~~~~~ 91 (373)
T COG4641 12 YNNGSAEYYRGLLRALKMDGMKVLFLESGDFWDYKNRDIDAEDGCTEAFYKDQPELESLLYIREFKPDIIVNMSGDDQPD 91 (373)
T ss_pred hcCCchhhHHHHHHHHHhccceEEEEecccHHhhhcccccCccchhheeecCcHHHHHHHHHHhcCCcEEEEeccccccc
Confidence 35677778888999999999999998876521 1222222222211111 122234457788999998765441
Q ss_pred -hHHHHHHhhCCCCCCCEEEEEcCchhh-----HHHHHHHhhcchhhHhhHHHHHhhcceEEecCCcc--ccccccCCCC
Q 002535 227 -KVVISNIMQEPFKSLPLVWTIHEGTLA-----TRARNYASSGQLELLNDWKKVFNRATVVVFPDYVL--PMMYSAFDAG 298 (911)
Q Consensus 227 -~~~ia~L~~~~~~giPvV~tiH~~~L~-----~~l~k~~~~~~d~lIs~~~~~~~~a~~vvfpn~~l--~ii~~~id~~ 298 (911)
......+.......+|+++..-+.+.. ...+.......+.. +... .+-...+ ...+...-..
T Consensus 92 ~~~~~~~~a~l~~~~l~~~~w~te~p~~~~~~~~~~~~~~~~~~l~~---fd~v-------~~~g~~l~~~~yyq~~~~~ 161 (373)
T COG4641 92 EESTIDLWAWLKRKCLPVIVWYTEDPYDTDIFSQVAEEQLARRPLFI---FDNV-------LSFGGGLVANKYYQEGGAR 161 (373)
T ss_pred ceehHHHHHHhhcCCcceEEEEeccchhhhhhhhhhHHHhhccccch---hhhh-------hhccchHHHHHHHHhhccc
Confidence 001112222245678866555543332 11111111111100 0000 0000000 0111112223
Q ss_pred CEEEeCCCCCCcccccccCchhhHHHHHhhCCCCCCeEEEEEEeccccccccccHHHHHHHHHHhhhhcccCCCCCCCEE
Q 002535 299 NYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIK 378 (911)
Q Consensus 299 ki~VIpg~gVD~~~f~~~~~~~k~~lR~~lgi~~d~~vIL~VGsrl~~~KGiKg~dlLLeAl~~L~~~~p~~~~~~~~vk 378 (911)
+.+.++ .++|...+.+.++.. .-..-+.++|+..+- . .+.++.+.-+ |. .....+-+
T Consensus 162 ~~~~~~-~a~d~~~~~~i~~da-----------~~~~dL~~ign~~pD------r---~e~~ke~~~~-ps-~kl~v~rr 218 (373)
T COG4641 162 NCYYLP-WAVDDSLFHPIPPDA-----------SYDVDLNLIGNPYPD------R---VEEIKEFFVE-PS-FKLMVDRR 218 (373)
T ss_pred ceeccC-ccCCchhcccCCccc-----------cceeeeEEecCCCcc------H---HHHHHHHhhc-cc-hhhhccce
Confidence 445555 577876666665432 112256778833222 2 4555544322 11 00000123
Q ss_pred EEEEeCCCCCchHHHHHHHHHHcCCCCccEEEcccc---ccHHHHHHHcCeeEEccc--CCcCCc--cHHHHHHHHcCCC
Q 002535 379 VMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAE---GDVDSVLNTADVVIYGSF--LEEQTF--PEILVKALCFRKP 451 (911)
Q Consensus 379 LvIVGG~~~e~Y~~~Le~la~~lgL~~~~V~flG~v---~dV~~~L~~ADVfVlPS~--~E~qGF--plvLLEAMA~G~P 451 (911)
+...| +. |.. ......-. + ++...|+. ..+..+++..|+.+.-++ .+..++ .+-+.|+|+||.|
T Consensus 219 ~~~~g-~~---y~~---~~~~~~~~-~-~~~yIg~~~~~~~v~~~~~~~~~~~n~~r~~~~~~l~~~~~RvFeiagc~~~ 289 (373)
T COG4641 219 FYVLG-PR---YPD---DIWGRTWE-P-NVQYIGYYNPKDGVPNAFKRDDVTLNINRASIANALFSPTNRVFEIAGCGGF 289 (373)
T ss_pred eeecC-Cc---cch---hhhccccc-c-hhhhhhccCccchhhhcccccceeeeecHHHHHhhcCCchhhHHHHhhcCCc
Confidence 33444 22 111 11111111 1 34555543 578889999999875442 233244 8899999999999
Q ss_pred EEecCCCccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHH
Q 002535 452 IIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSV-KNLMALETIEGYAMLLENV 528 (911)
Q Consensus 452 VIaTd~gGi~EiV~dg~nGlLv~~~D~eaLAeaI~~LLsd~~~p~~~~~mg~~ar~~a-e~Fs~e~ia~~y~~Lye~v 528 (911)
.|+....++...+.+|+.-++ ..|.+++.+++..++.. ++.++++++.|.+.+ ..|+.+.-+..+.+.+.++
T Consensus 290 liT~~~~~~e~~f~pgk~~iv--~~d~kdl~~~~~yll~h---~~erkeiae~~ye~V~~~ht~~~r~~~~~~~i~sI 362 (373)
T COG4641 290 LITDYWKDLEKFFKPGKDIIV--YQDSKDLKEKLKYLLNH---PDERKEIAECAYERVLARHTYEERIFKLLNEIASI 362 (373)
T ss_pred cccccHHHHHHhcCCchheEE--ecCHHHHHHHHHHHhcC---cchHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHH
Confidence 999999999999999885444 45999999999999999 999999999999999 5598888887777777764
No 128
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=97.87 E-value=0.0011 Score=76.94 Aligned_cols=127 Identities=14% Similarity=0.127 Sum_probs=85.1
Q ss_pred EEEEEEeCCCCCchHHHHHHHHHHcCCCCccEEEccccccHHHHHHHcCeeEEcccCCcCCccHHHHHHHHcCCCEEecC
Q 002535 377 IKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPD 456 (911)
Q Consensus 377 vkLvIVGG~~~e~Y~~~Le~la~~lgL~~~~V~flG~v~dV~~~L~~ADVfVlPS~~E~qGFplvLLEAMA~G~PVIaTd 456 (911)
.++++..|..+. ...+++. ++...++. ...+++..||++|... =-+++.||+.+|+|+|+-.
T Consensus 266 ~~vi~~~~~~~~----------~~~~~p~-n~~v~~~~-p~~~~l~~ad~vI~hG------G~gtt~eaL~~gvP~vv~P 327 (406)
T COG1819 266 VRVIVSLGGARD----------TLVNVPD-NVIVADYV-PQLELLPRADAVIHHG------GAGTTSEALYAGVPLVVIP 327 (406)
T ss_pred cEEEEecccccc----------ccccCCC-ceEEecCC-CHHHHhhhcCEEEecC------CcchHHHHHHcCCCEEEec
Confidence 577777754321 1125666 78888887 4456999999999876 2458899999999998865
Q ss_pred CCc----cccccccCccEEEEc--CCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 002535 457 LSN----IRKYVDDRVNGYLFP--KENIKALTHIILQVITNGKISPFARNIASIGRRSVKNLMALETIEGYAML 524 (911)
Q Consensus 457 ~gG----i~EiV~dg~nGlLv~--~~D~eaLAeaI~~LLsd~~~p~~~~~mg~~ar~~ae~Fs~e~ia~~y~~L 524 (911)
.+. ..+.+++-..|...+ .-+++.++++|.++++| +..+++..+..+...+.-...+.++...++
T Consensus 328 ~~~DQ~~nA~rve~~G~G~~l~~~~l~~~~l~~av~~vL~~---~~~~~~~~~~~~~~~~~~g~~~~a~~le~~ 398 (406)
T COG1819 328 DGADQPLNAERVEELGAGIALPFEELTEERLRAAVNEVLAD---DSYRRAAERLAEEFKEEDGPAKAADLLEEF 398 (406)
T ss_pred CCcchhHHHHHHHHcCCceecCcccCCHHHHHHHHHHHhcC---HHHHHHHHHHHHHhhhcccHHHHHHHHHHH
Confidence 542 345566666787777 57899999999999999 555544433333332334433344444433
No 129
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=97.78 E-value=0.0026 Score=70.12 Aligned_cols=169 Identities=14% Similarity=0.198 Sum_probs=113.7
Q ss_pred CeEEEEEEeccccccccccHHHHHHHHHHhhhhcccCCCCCCCEEEEEEe--CCCCCchHHHHHHHHHHcCCCCccEEEc
Q 002535 334 DLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILS--GDSTSNYSVVIEAIAHNLHYPLGVVKHM 411 (911)
Q Consensus 334 ~~vIL~VGsrl~~~KGiKg~dlLLeAl~~L~~~~p~~~~~~~~vkLvIVG--G~~~e~Y~~~Le~la~~lgL~~~~V~fl 411 (911)
..+.+.+|+.-.+. .++ ++|+..|.+... .++++++.= +...+.|.+.+++.++++--.+ ++..+
T Consensus 145 ~~~tIlvGNSgd~S---N~H---ie~L~~l~~~~~------~~v~ii~PlsYp~gn~~Yi~~V~~~~~~lF~~~-~~~~L 211 (322)
T PRK02797 145 GKMTILVGNSGDRS---NRH---IEALRALHQQFG------DNVKIIVPMGYPANNQAYIEEVRQAGLALFGAE-NFQIL 211 (322)
T ss_pred CceEEEEeCCCCCc---ccH---HHHHHHHHHHhC------CCeEEEEECCcCCCCHHHHHHHHHHHHHhcCcc-cEEeh
Confidence 34677788777776 888 566666554432 237777665 3356789999999999887645 57776
Q ss_pred cc-c--ccHHHHHHHcCeeEEcccCCcCCccHHHHHHHHcCCCEEec-CCCccccccccCccEEEEcCCCHHHHHHHHHH
Q 002535 412 AA-E--GDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAP-DLSNIRKYVDDRVNGYLFPKENIKALTHIILQ 487 (911)
Q Consensus 412 G~-v--~dV~~~L~~ADVfVlPS~~E~qGFplvLLEAMA~G~PVIaT-d~gGi~EiV~dg~nGlLv~~~D~eaLAeaI~~ 487 (911)
-. . +|..++++.||+.++--... ||+|+.+ =.+..|+||+.+ +.+-..++.+.|. -++++.++.+. ++
T Consensus 212 ~e~l~f~eYl~lL~~~Dl~~f~~~RQ-QgiGnl~-lLi~~G~~v~l~r~n~fwqdl~e~gv-~Vlf~~d~L~~---~~-- 283 (322)
T PRK02797 212 TEKLPFDDYLALLRQCDLGYFIFARQ-QGIGTLC-LLIQLGKPVVLSRDNPFWQDLTEQGL-PVLFTGDDLDE---DI-- 283 (322)
T ss_pred hhhCCHHHHHHHHHhCCEEEEeechh-hHHhHHH-HHHHCCCcEEEecCCchHHHHHhCCC-eEEecCCcccH---HH--
Confidence 52 2 88999999999999886544 3777655 589999998765 5666677776655 34454433311 10
Q ss_pred HHHcCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhc
Q 002535 488 VITNGKISPFARNIASIGRRSVKNLMALETIEGYAMLLENVLK 530 (911)
Q Consensus 488 LLsd~~~p~~~~~mg~~ar~~ae~Fs~e~ia~~y~~Lye~vL~ 530 (911)
+ .+.+++|+...++.+. |+.++.++.|.++++.+..
T Consensus 284 -v-----~e~~rql~~~dk~~I~-Ff~pn~~~~W~~~l~~~~g 319 (322)
T PRK02797 284 -V-----REAQRQLASVDKNIIA-FFSPNYLQGWRNALAIAAG 319 (322)
T ss_pred -H-----HHHHHHHHhhCcceee-ecCHhHHHHHHHHHHHhhC
Confidence 0 1233345555555555 9999999999999987654
No 130
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=97.73 E-value=0.0085 Score=65.84 Aligned_cols=279 Identities=13% Similarity=0.109 Sum_probs=160.6
Q ss_pred hHHHHHHHHHHHHHHCCCeEEEEEeCCCcchhhhhhcCceEEEeccch----------------hHHHhhhhcCccEEEE
Q 002535 158 PQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGR----------------EKASFVNWLNYDGILV 221 (911)
Q Consensus 158 Gae~~v~~LAk~L~~~GyeV~V~t~~~g~~~~~~~~~gi~v~~l~~~~----------------~l~~lI~~~kpDIIhv 221 (911)
.......++...|.++||+|.+.|...+...+..+.+|++...+.... .+.+++...+||+.+.
T Consensus 11 ~hvhfFk~lI~elekkG~ev~iT~rd~~~v~~LLd~ygf~~~~Igk~g~~tl~~Kl~~~~eR~~~L~ki~~~~kpdv~i~ 90 (346)
T COG1817 11 PHVHFFKNLIWELEKKGHEVLITCRDFGVVTELLDLYGFPYKSIGKHGGVTLKEKLLESAERVYKLSKIIAEFKPDVAIG 90 (346)
T ss_pred chhhHHHHHHHHHHhCCeEEEEEEeecCcHHHHHHHhCCCeEeecccCCccHHHHHHHHHHHHHHHHHHHhhcCCceEee
Confidence 344567789999999999999999988888888888898876654321 2345566789999875
Q ss_pred -cCcchhHHHHHHhhCCCCCCCEEEEEcCchhhHHHHHHHhhcchhhHhhHHHHHhhcceEEecCCc--cccccccCCCC
Q 002535 222 -NSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRATVVVFPDYV--LPMMYSAFDAG 298 (911)
Q Consensus 222 -hs~~~~~~ia~L~~~~~~giPvV~tiH~~~L~~~l~k~~~~~~d~lIs~~~~~~~~a~~vvfpn~~--l~ii~~~id~~ 298 (911)
|++.. ++.. ...++|.|+.... .-...-++.....++. +..|... ......+-++.
T Consensus 91 ~~s~~l----~rva--fgLg~psIi~~D~-ehA~~qnkl~~Pla~~--------------ii~P~~~~~~~~~~~G~~p~ 149 (346)
T COG1817 91 KHSPEL----PRVA--FGLGIPSIIFVDN-EHAEAQNKLTLPLADV--------------IITPEAIDEEELLDFGADPN 149 (346)
T ss_pred cCCcch----hhHH--hhcCCceEEecCC-hhHHHHhhcchhhhhh--------------eecccccchHHHHHhCCCcc
Confidence 33333 2322 1345777765542 1111112222233332 3333211 01112222333
Q ss_pred CEEEeCCCCCCcc-cccccCchhhHHHHHhhCCCCCCeEEEE-EEe-ccccccccccHHHHHHHHHHhhhhcccCCCCCC
Q 002535 299 NYYVIPGSPAKAW-EADTNMDLYNDTVRVKMGFKPDDLVIAI-VGT-QFMYRGLWLEHALILRALLPLFSEVSVENESNS 375 (911)
Q Consensus 299 ki~VIpg~gVD~~-~f~~~~~~~k~~lR~~lgi~~d~~vIL~-VGs-rl~~~KGiKg~dlLLeAl~~L~~~~p~~~~~~~ 375 (911)
++.-.++ +-.- .+..|.+ ..+.-+++|+..+...|++ .-+ .-.+..|..+.+.+.++++.+.+.
T Consensus 150 ~i~~~~g--iae~~~v~~f~p--d~evlkeLgl~~~~~yIVmRpe~~~A~y~~g~~~~~~~~~li~~l~k~--------- 216 (346)
T COG1817 150 KISGYNG--IAELANVYGFVP--DPEVLKELGLEEGETYIVMRPEPWGAHYDNGDRGISVLPDLIKELKKY--------- 216 (346)
T ss_pred ceecccc--eeEEeecccCCC--CHHHHHHcCCCCCCceEEEeeccccceeeccccchhhHHHHHHHHHhC---------
Confidence 3333322 1100 0111222 3456678899986544443 221 233455557776777777777653
Q ss_pred CEEEEEEeCCCCCchHHHHHHHHHHcCCCCccEEEccccccHHHHHHHcCeeEEcccCCcCCccHHHHHHHHcCCCEEec
Q 002535 376 PIKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAP 455 (911)
Q Consensus 376 ~vkLvIVGG~~~e~Y~~~Le~la~~lgL~~~~V~flG~v~dV~~~L~~ADVfVlPS~~E~qGFplvLLEAMA~G~PVIaT 455 (911)
-.+++-- . ...++..+ +..+ ++.....-|-.+++-.|++++-.+ |.---||...|+|.|++
T Consensus 217 --giV~ipr--~----~~~~eife--~~~n--~i~pk~~vD~l~Llyya~lvig~g-------gTMarEaAlLGtpaIs~ 277 (346)
T COG1817 217 --GIVLIPR--E----KEQAEIFE--GYRN--IIIPKKAVDTLSLLYYATLVIGAG-------GTMAREAALLGTPAISC 277 (346)
T ss_pred --cEEEecC--c----hhHHHHHh--hhcc--ccCCcccccHHHHHhhhheeecCC-------chHHHHHHHhCCceEEe
Confidence 2233321 1 23334444 4443 333333456667888899988443 55667999999999999
Q ss_pred CCC---ccccccccCccEEEEcCCCHHHHHHHHHHHHHc
Q 002535 456 DLS---NIRKYVDDRVNGYLFPKENIKALTHIILQVITN 491 (911)
Q Consensus 456 d~g---Gi~EiV~dg~nGlLv~~~D~eaLAeaI~~LLsd 491 (911)
.-| +..+...+ .|.++...|+.+..+...+++.+
T Consensus 278 ~pGkll~vdk~lie--~G~~~~s~~~~~~~~~a~~~l~~ 314 (346)
T COG1817 278 YPGKLLAVDKYLIE--KGLLYHSTDEIAIVEYAVRNLKY 314 (346)
T ss_pred cCCccccccHHHHh--cCceeecCCHHHHHHHHHHHhhc
Confidence 844 23444444 68899988999888888888877
No 131
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=97.34 E-value=0.035 Score=62.24 Aligned_cols=283 Identities=13% Similarity=0.129 Sum_probs=152.7
Q ss_pred EEEeccchhHHHh----hhhcCccEEEEcCcchhHHHHHHhhCCCCCCCEEEEEcCchhhHHHHHHHhhcchhhHhh-HH
Q 002535 198 VAILQTGREKASF----VNWLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLND-WK 272 (911)
Q Consensus 198 v~~l~~~~~l~~l----I~~~kpDIIhvhs~~~~~~ia~L~~~~~~giPvV~tiH~~~L~~~l~k~~~~~~d~lIs~-~~ 272 (911)
+...+..+.+... .+..+.+=+++|+.+.......++..+....++.|.+-|..++.....+. -.+... -+
T Consensus 57 i~~~~~Kk~la~avi~~a~~~r~~kff~HGqFn~~lwlaLl~g~~~~~k~~WhIWGaDLYe~~~~~k----~rlfy~lRr 132 (360)
T PF07429_consen 57 IECFSSKKALAQAVIAKAKADRADKFFLHGQFNPWLWLALLFGKIKLKKCYWHIWGADLYEDSRSLK----FRLFYFLRR 132 (360)
T ss_pred eEEecCHHHHHHHHHHHHhhCccceEEEeccCcHHHHHHHHcCCccccceEEEEeCchhhccccccc----hhHHHHHHH
Confidence 4455555544432 23367888999998875555555544456678899999977763211111 111111 11
Q ss_pred HHHhhcceEEecCCcccc---ccccCCCCCEEEeCCCCCCcccccccCchhhHHHHHhhCCCCCCeEEEEEEeccccccc
Q 002535 273 KVFNRATVVVFPDYVLPM---MYSAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGL 349 (911)
Q Consensus 273 ~~~~~a~~vvfpn~~l~i---i~~~id~~ki~VIpg~gVD~~~f~~~~~~~k~~lR~~lgi~~d~~vIL~VGsrl~~~KG 349 (911)
....+...+......+.. .+..... ...+.| ..++... ... ......+...-+.+|+.-.+.
T Consensus 133 ~aq~rvg~V~at~GDl~~~~q~~~~~~~-~~lyfP-t~m~~~~-~~~----------~~~~~~~~~ltILvGNSgd~s-- 197 (360)
T PF07429_consen 133 LAQKRVGHVFATRGDLAYFQQRYPRVPA-SLLYFP-TRMDPAL-TLS----------EKNKKNKGKLTILVGNSGDPS-- 197 (360)
T ss_pred HHHhhcCeEEEEcchHHHHHHHcCCCCc-eEEEcC-CCCchhh-hcc----------ccccCCCCceEEEEcCCCCCC--
Confidence 111222222221111111 1222222 244444 2343311 000 011122345667778777776
Q ss_pred cccHHHHHHHHHHhhhhcccCCCCCCCEEEEEEe--CCCCCchHHHHHHHHHHcCCCCccEEEcc-cc--ccHHHHHHHc
Q 002535 350 WLEHALILRALLPLFSEVSVENESNSPIKVMILS--GDSTSNYSVVIEAIAHNLHYPLGVVKHMA-AE--GDVDSVLNTA 424 (911)
Q Consensus 350 iKg~dlLLeAl~~L~~~~p~~~~~~~~vkLvIVG--G~~~e~Y~~~Le~la~~lgL~~~~V~flG-~v--~dV~~~L~~A 424 (911)
.++ ++|+..|.+...+ ++++++-= |...++|.+.+++.++++--.+ ++..+- +. +|..++++.|
T Consensus 198 -NnH---ieaL~~L~~~~~~------~~kIivPLsYg~~n~~Yi~~V~~~~~~lF~~~-~~~iL~e~mpf~eYl~lL~~c 266 (360)
T PF07429_consen 198 -NNH---IEALEALKQQFGD------DVKIIVPLSYGANNQAYIQQVIQAGKELFGAE-NFQILTEFMPFDEYLALLSRC 266 (360)
T ss_pred -ccH---HHHHHHHHHhcCC------CeEEEEECCCCCchHHHHHHHHHHHHHhcCcc-ceeEhhhhCCHHHHHHHHHhC
Confidence 788 6666666654322 36766544 4445679999999999875544 576654 33 8999999999
Q ss_pred CeeEEcccCCcCCccHHHHHHHHcCCCEEecCCCccc-cccccCccEEEEcCC--CHHHHHHHHHHHHHcCCCcHHHHHH
Q 002535 425 DVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSNIR-KYVDDRVNGYLFPKE--NIKALTHIILQVITNGKISPFARNI 501 (911)
Q Consensus 425 DVfVlPS~~E~qGFplvLLEAMA~G~PVIaTd~gGi~-EiV~dg~nGlLv~~~--D~eaLAeaI~~LLsd~~~p~~~~~m 501 (911)
|+.+++.... ||.|+. .=.+.+|+||+.+.....- ++.+.+. -+++..+ |...+.++=+++.+-
T Consensus 267 Dl~if~~~RQ-QgiGnI-~lLl~~G~~v~L~~~np~~~~l~~~~i-pVlf~~d~L~~~~v~ea~rql~~~---------- 333 (360)
T PF07429_consen 267 DLGIFNHNRQ-QGIGNI-CLLLQLGKKVFLSRDNPFWQDLKEQGI-PVLFYGDELDEALVREAQRQLANV---------- 333 (360)
T ss_pred CEEEEeechh-hhHhHH-HHHHHcCCeEEEecCChHHHHHHhCCC-eEEeccccCCHHHHHHHHHHHhhC----------
Confidence 9999998655 377765 4589999999887655544 4444433 3444322 334444444444332
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHH
Q 002535 502 ASIGRRSVKNLMALETIEGYAMLLEN 527 (911)
Q Consensus 502 g~~ar~~ae~Fs~e~ia~~y~~Lye~ 527 (911)
-++.+ .|......+.|.+.+.-
T Consensus 334 ---dk~~i-aFf~pny~~~w~~~l~~ 355 (360)
T PF07429_consen 334 ---DKQQI-AFFAPNYLQGWRQALRL 355 (360)
T ss_pred ---cccce-eeeCCchHHHHHHHHHH
Confidence 01111 26666667777666543
No 132
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=97.22 E-value=0.022 Score=64.79 Aligned_cols=95 Identities=11% Similarity=-0.002 Sum_probs=61.7
Q ss_pred CCeEEEEEEeccccccccccHHHHHHHHHHhhhhcccCCCCCCCEEEEEEeCCCCCchHHHHHHHHHHcCCCCccEEEcc
Q 002535 333 DDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMA 412 (911)
Q Consensus 333 d~~vIL~VGsrl~~~KGiKg~dlLLeAl~~L~~~~p~~~~~~~~vkLvIVGG~~~e~Y~~~Le~la~~lgL~~~~V~flG 412 (911)
++.+.++-|||-..- .+.+..+++|+.++.++. ..+++.|.+.. +.+++...+. . .+.+.+
T Consensus 167 ~~~I~llPGSR~~Ei--~~llP~~~~aa~~L~~~~---------~~~~i~~a~~~----~~i~~~~~~~--~--~~~~~~ 227 (347)
T PRK14089 167 EGTIAFMPGSRKSEI--KRLMPIFKELAKKLEGKE---------KILVVPSFFKG----KDLKEIYGDI--S--EFEISY 227 (347)
T ss_pred CCEEEEECCCCHHHH--HHHHHHHHHHHHHHhhcC---------cEEEEeCCCcH----HHHHHHHhcC--C--CcEEec
Confidence 344555556554442 255566778888887542 57777774432 4555544422 2 244443
Q ss_pred ccccHHHHHHHcCeeEEcccCCcCCccHHHHHHHHcCCCEEecC
Q 002535 413 AEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPD 456 (911)
Q Consensus 413 ~v~dV~~~L~~ADVfVlPS~~E~qGFplvLLEAMA~G~PVIaTd 456 (911)
+..++|+.||+.+..| |.+-+|++.+|+|.|...
T Consensus 228 ---~~~~~m~~aDlal~~S-------GT~TLE~al~g~P~Vv~Y 261 (347)
T PRK14089 228 ---DTHKALLEAEFAFICS-------GTATLEAALIGTPFVLAY 261 (347)
T ss_pred ---cHHHHHHhhhHHHhcC-------cHHHHHHHHhCCCEEEEE
Confidence 6778999999999888 455669999999988754
No 133
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=97.15 E-value=2.6e-05 Score=78.63 Aligned_cols=89 Identities=19% Similarity=0.249 Sum_probs=60.6
Q ss_pred cEEEccccccHHHHHHHcCeeEEcccCCcCCccHHHHHHHHcCCCEEecCCCc--------cccccccCccEEEEcC--C
Q 002535 407 VVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSN--------IRKYVDDRVNGYLFPK--E 476 (911)
Q Consensus 407 ~V~flG~v~dV~~~L~~ADVfVlPS~~E~qGFplvLLEAMA~G~PVIaTd~gG--------i~EiV~dg~nGlLv~~--~ 476 (911)
+|.++++.+++.++|+.||++|.-+ -+.++.|++++|+|.|.-+..+ ....+.....|..+.. .
T Consensus 56 ~v~~~~~~~~m~~~m~~aDlvIs~a------G~~Ti~E~l~~g~P~I~ip~~~~~~~~q~~na~~~~~~g~~~~~~~~~~ 129 (167)
T PF04101_consen 56 NVKVFGFVDNMAELMAAADLVISHA------GAGTIAEALALGKPAIVIPLPGAADNHQEENAKELAKKGAAIMLDESEL 129 (167)
T ss_dssp CCEEECSSSSHHHHHHHHSEEEECS-------CHHHHHHHHCT--EEEE--TTT-T-CHHHHHHHHHHCCCCCCSECCC-
T ss_pred cEEEEechhhHHHHHHHcCEEEeCC------CccHHHHHHHcCCCeeccCCCCcchHHHHHHHHHHHHcCCccccCcccC
Confidence 6999999999999999999999654 2679999999999988765555 2222333223444433 3
Q ss_pred CHHHHHHHHHHHHHcCCCcHHHHHHHHH
Q 002535 477 NIKALTHIILQVITNGKISPFARNIASI 504 (911)
Q Consensus 477 D~eaLAeaI~~LLsd~~~p~~~~~mg~~ 504 (911)
+++.|.++|..++++ +....+|.++
T Consensus 130 ~~~~L~~~i~~l~~~---~~~~~~~~~~ 154 (167)
T PF04101_consen 130 NPEELAEAIEELLSD---PEKLKEMAKA 154 (167)
T ss_dssp SCCCHHHHHHCHCCC---HH-SHHHCCC
T ss_pred CHHHHHHHHHHHHcC---cHHHHHHHHH
Confidence 368899999999998 6665655544
No 134
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=97.14 E-value=0.023 Score=64.69 Aligned_cols=309 Identities=15% Similarity=0.179 Sum_probs=129.7
Q ss_pred CCCCCEEEEEeC-CCCCChHHHHHHHHHHHHHHCCCeEEEEEeCCCcchhhhhhcCceEEEeccchhHHHhhhhcCccEE
Q 002535 141 GYRKPQLALVFP-DLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGI 219 (911)
Q Consensus 141 ~~rkprIalI~~-~L~~GGae~~v~~LAk~L~~~GyeV~V~t~~~g~~~~~~~~~gi~v~~l~~~~~l~~lI~~~kpDII 219 (911)
+.++.+|.+... +-..++....+..-+. -...++++..++..... .....+..+........ +......+++
T Consensus 10 p~~~~~Ivf~~~~g~~~~dN~~~l~~~l~-~~~~~~~~~~~~~~~~~---~~~~~~~~~v~~~s~~~---~~~~~~Ak~~ 82 (369)
T PF04464_consen 10 PKKKKKIVFESESGNKFSDNPKALFEYLI-KNYPDYKIYWIINKKSP---ELKPKGIKVVKFGSLKH---IYYLARAKYI 82 (369)
T ss_dssp G-EEEEEEEEBTTTTBS-HHHHHHHHHHH-HH-TTSEEEEEESSGGG-------SS-EEEETTSHHH---HHHHHHEEEE
T ss_pred cccCCEEEEEECCCCCCCCCHHHHHHHHH-hhCCCcEEEEEEcCchH---hhccCCceEEeecHHHH---HHHHHhCcEE
Confidence 445556666554 3345666665555443 12344566555543222 22233434433333222 2222456788
Q ss_pred EEcCcchhHHHHHHhhCCCCCCCEEEEEcCchhhHHHHHHHhhcchhhHhhHHHHHhhcceEEecCCcc-ccccc--cCC
Q 002535 220 LVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRATVVVFPDYVL-PMMYS--AFD 296 (911)
Q Consensus 220 hvhs~~~~~~ia~L~~~~~~giPvV~tiH~~~L~~~l~k~~~~~~d~lIs~~~~~~~~a~~vvfpn~~l-~ii~~--~id 296 (911)
++++.... .. .. ....+.++|.+.||.++.. +........ .............+.++.++... ..... +.+
T Consensus 83 i~~~~~~~-~~-~~--~~~~~~~~i~lwHG~~~K~-~g~~~~~~~-~~~~~~~~~~~~~d~~~~~s~~~~~~~~~~f~~~ 156 (369)
T PF04464_consen 83 ISDSYFPD-LI-YF--KKRKNQKYIQLWHGIPLKK-IGYDSPDNK-NYRKNYKRNYRNYDYFIVSSEFEKEIFKKAFGYP 156 (369)
T ss_dssp EESS---T----TS-----TTSEEEE--SS--SB---GGG-S----TS-HHHHHHHTT-SEEEESSHHHHHHHHHHTT--
T ss_pred EECCCCCc-cc-cc--ccCCCcEEEEecCCCcccc-cchhccccc-cchhhhhhhccCCcEEEECCHHHHHHHHHHhccC
Confidence 87743331 11 11 2346679999999975542 100000000 00001222334445444444331 11111 233
Q ss_pred CCCEEEeCCCCCCcccccccCchhhHHHHHhhCCCCCCeEEEEEEeccccccc--cccH--HHHHHHHHHhhhhcccCCC
Q 002535 297 AGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGL--WLEH--ALILRALLPLFSEVSVENE 372 (911)
Q Consensus 297 ~~ki~VIpg~gVD~~~f~~~~~~~k~~lR~~lgi~~d~~vIL~VGsrl~~~KG--iKg~--dlLLeAl~~L~~~~p~~~~ 372 (911)
.+++.+ .|.|-...-+... ....+.+++.++++.++.+|+|+-+--..... .+.. .+-++.+..+. .++
T Consensus 157 ~~~i~~-~G~PR~D~l~~~~-~~~~~~i~~~~~~~~~~k~ILyaPT~R~~~~~~~~~~~~~~~~~~~l~~~~--~~~--- 229 (369)
T PF04464_consen 157 EDKILV-TGYPRNDYLFNKS-KENRNRIKKKLGIDKDKKVILYAPTWRDNSSNEYFKFFFSDLDFEKLNFLL--KNN--- 229 (369)
T ss_dssp GGGEEE-S--GGGHHHHHST-T-HHHHHHHHTT--SS-EEEEEE----GGG--GGSS----TT-HHHHHHHH--TTT---
T ss_pred cceEEE-eCCCeEhHHhccC-HHHHHHHHHHhccCCCCcEEEEeeccccccccccccccccccCHHHHHHHh--CCC---
Confidence 344443 3333221111111 11145678889999998899998532111100 0011 11223333222 223
Q ss_pred CCCCEEEEEEeCCCCCchHHHHHHHHHH-cCCCCccEEEccccccHHHHHHHcCeeEEcccCCcCCccHHHHHHHHcCCC
Q 002535 373 SNSPIKVMILSGDSTSNYSVVIEAIAHN-LHYPLGVVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKP 451 (911)
Q Consensus 373 ~~~~vkLvIVGG~~~e~Y~~~Le~la~~-lgL~~~~V~flG~v~dV~~~L~~ADVfVlPS~~E~qGFplvLLEAMA~G~P 451 (911)
+.+++-.-+. .+..... ....+ +|.+.....++.+++..||++|. + ++.++.|++.+++|
T Consensus 230 ----~~li~k~Hp~-------~~~~~~~~~~~~~-~i~~~~~~~~~~~ll~~aDiLIT----D---ySSi~fD~~~l~KP 290 (369)
T PF04464_consen 230 ----YVLIIKPHPN-------MKKKFKDFKEDNS-NIIFVSDNEDIYDLLAAADILIT----D---YSSIIFDFLLLNKP 290 (369)
T ss_dssp ----EEEEE--SHH-------HHTT----TT-TT-TEEE-TT-S-HHHHHHT-SEEEE----S---S-THHHHHGGGT--
T ss_pred ----cEEEEEeCch-------hhhchhhhhccCC-cEEECCCCCCHHHHHHhcCEEEE----e---chhHHHHHHHhCCC
Confidence 7777655321 1111111 23344 68887766799999999999993 2 67799999999999
Q ss_pred EEe--cCC-------CccccccccCccEEEEcCCCHHHHHHHHHHHHHc
Q 002535 452 IIA--PDL-------SNIRKYVDDRVNGYLFPKENIKALTHIILQVITN 491 (911)
Q Consensus 452 VIa--Td~-------gGi~EiV~dg~nGlLv~~~D~eaLAeaI~~LLsd 491 (911)
||- .|. |...++ .+...|.++. +.++|.++|..++++
T Consensus 291 iify~~D~~~Y~~~rg~~~~~-~~~~pg~~~~--~~~eL~~~i~~~~~~ 336 (369)
T PF04464_consen 291 IIFYQPDLEEYEKERGFYFDY-EEDLPGPIVY--NFEELIEAIENIIEN 336 (369)
T ss_dssp EEEE-TTTTTTTTTSSBSS-T-TTSSSS-EES--SHHHHHHHHTTHHHH
T ss_pred EEEEeccHHHHhhccCCCCch-HhhCCCceeC--CHHHHHHHHHhhhhC
Confidence 994 343 112222 2233455654 899999999999987
No 135
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=97.08 E-value=0.011 Score=61.33 Aligned_cols=109 Identities=14% Similarity=0.112 Sum_probs=70.2
Q ss_pred CEEEEEeCC---CCCChHHHHHHHHHHHHHHCCCeEEEEEeCCCcchhhhhhcCceEEEeccchh------------HHH
Q 002535 145 PQLALVFPD---LLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGRE------------KAS 209 (911)
Q Consensus 145 prIalI~~~---L~~GGae~~v~~LAk~L~~~GyeV~V~t~~~g~~~~~~~~~gi~v~~l~~~~~------------l~~ 209 (911)
.+|++|-+- -..||-|+.+-+|+..|.++|++|+|+|..+..........|+.+..++.... +..
T Consensus 2 kkIaIiGtrGIPa~YGGfET~ve~L~~~l~~~g~~v~Vyc~~~~~~~~~~~y~gv~l~~i~~~~~g~~~si~yd~~sl~~ 81 (185)
T PF09314_consen 2 KKIAIIGTRGIPARYGGFETFVEELAPRLVSKGIDVTVYCRSDYYPYKEFEYNGVRLVYIPAPKNGSAESIIYDFLSLLH 81 (185)
T ss_pred ceEEEEeCCCCCcccCcHHHHHHHHHHHHhcCCceEEEEEccCCCCCCCcccCCeEEEEeCCCCCCchHHHHHHHHHHHH
Confidence 466777663 35799999999999999999999999998764422233334555444443211 111
Q ss_pred hh---hh--cCccEEEEcCcchhHHHHHHhhC-CCCCCCEEEEEcCchhh
Q 002535 210 FV---NW--LNYDGILVNSLEAKVVISNIMQE-PFKSLPLVWTIHEGTLA 253 (911)
Q Consensus 210 lI---~~--~kpDIIhvhs~~~~~~ia~L~~~-~~~giPvV~tiH~~~L~ 253 (911)
.+ +. .++|+|+++.....+++..+... +..+.|+++++||-.+.
T Consensus 82 al~~~~~~~~~~~ii~ilg~~~g~~~~~~~r~~~~~g~~v~vN~DGlEWk 131 (185)
T PF09314_consen 82 ALRFIKQDKIKYDIILILGYGIGPFFLPFLRKLRKKGGKVVVNMDGLEWK 131 (185)
T ss_pred HHHHHhhccccCCEEEEEcCCccHHHHHHHHhhhhcCCcEEECCCcchhh
Confidence 12 11 25789999988743455555532 23467999999984443
No 136
>KOG3742 consensus Glycogen synthase [Carbohydrate transport and metabolism]
Probab=96.82 E-value=0.0089 Score=67.90 Aligned_cols=108 Identities=14% Similarity=0.191 Sum_probs=77.4
Q ss_pred cHHHHHHHcCeeEEcccCCcCCccHHHHHHHHcCCCEEecCCCccc----cccccC-ccEEEE-c------CCCHHHHHH
Q 002535 416 DVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSNIR----KYVDDR-VNGYLF-P------KENIKALTH 483 (911)
Q Consensus 416 dV~~~L~~ADVfVlPS~~E~qGFplvLLEAMA~G~PVIaTd~gGi~----EiV~dg-~nGlLv-~------~~D~eaLAe 483 (911)
|..++.+.|++-|+||++|+ +|.+..|.-.+|+|-|+|+.+|.. |.|.+. ..|+.+ + .++.+.|++
T Consensus 493 DYeeFVRGCHLGVFPSYYEP--WGYTPAECTVMGiPSvtTNlSGFGcfMeehi~d~~ayGIYIvDRRfks~deSv~qL~~ 570 (692)
T KOG3742|consen 493 DYEEFVRGCHLGVFPSYYEP--WGYTPAECTVMGIPSVTTNLSGFGCFMEEHIEDPQAYGIYIVDRRFKSPDESVQQLAS 570 (692)
T ss_pred CHHHHhccccccccccccCC--CCCCchheEEeccccccccccchhhhHHHHhcCchhceEEEEecccCChhhHHHHHHH
Confidence 67789999999999999996 999999999999999999999864 555443 346543 2 244677777
Q ss_pred HHHHHHHcCCCcHHHHHHHHHHH-HHH-HhcCHHHHHHHHHHHHHHHh
Q 002535 484 IILQVITNGKISPFARNIASIGR-RSV-KNLMALETIEGYAMLLENVL 529 (911)
Q Consensus 484 aI~~LLsd~~~p~~~~~mg~~ar-~~a-e~Fs~e~ia~~y~~Lye~vL 529 (911)
-|...... ..++++.+..+ +.. .-.+|..+..-|.+.=.-.|
T Consensus 571 ~m~~F~~q----sRRQRIiqRNrtErLSdLLDWk~lG~~Y~~aR~laL 614 (692)
T KOG3742|consen 571 FMYEFCKQ----SRRQRIIQRNRTERLSDLLDWKYLGRYYRKARHLAL 614 (692)
T ss_pred HHHHHHHH----HHHHHHHHhcchhhHHHHHhHHHHhHHHHHHHHHHH
Confidence 77777765 45555544333 333 33788888877766544433
No 137
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=96.82 E-value=0.0056 Score=66.19 Aligned_cols=40 Identities=15% Similarity=0.170 Sum_probs=30.8
Q ss_pred EEEEEeCCC----CCChHHHHHHHHHHHHHHCCCeEEEEEeCCC
Q 002535 146 QLALVFPDL----LIDPQQLQMVTIAIALREIGYAIQVYSLEDG 185 (911)
Q Consensus 146 rIalI~~~L----~~GGae~~v~~LAk~L~~~GyeV~V~t~~~g 185 (911)
||++|.... ..||...++..|+++|+++|++|.|+.+..+
T Consensus 1 kIl~vt~E~~P~~k~GGLgdv~~~L~kaL~~~G~~V~Vi~P~y~ 44 (245)
T PF08323_consen 1 KILMVTSEYAPFAKVGGLGDVVGSLPKALAKQGHDVRVIMPKYG 44 (245)
T ss_dssp EEEEE-S-BTTTB-SSHHHHHHHHHHHHHHHTT-EEEEEEE-TH
T ss_pred CEEEEEcccCcccccCcHhHHHHHHHHHHHhcCCeEEEEEccch
Confidence 567777654 4699999999999999999999999998763
No 138
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=96.70 E-value=0.42 Score=53.78 Aligned_cols=104 Identities=12% Similarity=0.094 Sum_probs=65.8
Q ss_pred EEEEEeCCCCCchHHHHHHHHHHcCCCCccEEEccccccHHHHHHHcCeeEEcccCCcCCccHHHHHHHHcCCCEEecCC
Q 002535 378 KVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDL 457 (911)
Q Consensus 378 kLvIVGG~~~e~Y~~~Le~la~~lgL~~~~V~flG~v~dV~~~L~~ADVfVlPS~~E~qGFplvLLEAMA~G~PVIaTd~ 457 (911)
-++|.|....+ ...+++.+.- -++++|++.-+.+++..++..|+.+|.-+-+ +++.|-+++|||.+.-..
T Consensus 253 ~~ivtGP~MP~---~~r~~l~~~A-~~~p~i~I~~f~~~~~~ll~gA~~vVSm~GY------NTvCeILs~~k~aLivPr 322 (400)
T COG4671 253 WLIVTGPFMPE---AQRQKLLASA-PKRPHISIFEFRNDFESLLAGARLVVSMGGY------NTVCEILSFGKPALIVPR 322 (400)
T ss_pred eEEEeCCCCCH---HHHHHHHHhc-ccCCCeEEEEhhhhHHHHHHhhheeeecccc------hhhhHHHhCCCceEEecc
Confidence 35555643332 3333333322 2223799999999999999999999976633 488999999999765443
Q ss_pred C-ccccccc-------cCccEEEEcC-CCHHHHHHHHHHHHHc
Q 002535 458 S-NIRKYVD-------DRVNGYLFPK-ENIKALTHIILQVITN 491 (911)
Q Consensus 458 g-Gi~EiV~-------dg~nGlLv~~-~D~eaLAeaI~~LLsd 491 (911)
. +-.|... =|-...+-|. -+++.||++|...++-
T Consensus 323 ~~p~eEQliRA~Rl~~LGL~dvL~pe~lt~~~La~al~~~l~~ 365 (400)
T COG4671 323 AAPREEQLIRAQRLEELGLVDVLLPENLTPQNLADALKAALAR 365 (400)
T ss_pred CCCcHHHHHHHHHHHhcCcceeeCcccCChHHHHHHHHhcccC
Confidence 3 2223221 1223334433 3478899999888874
No 139
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=96.59 E-value=0.31 Score=52.77 Aligned_cols=256 Identities=13% Similarity=0.075 Sum_probs=130.0
Q ss_pred CChHHHHHHHHHHHHHHCCCeEEEEEeCC-CcchhhhhhcCceEEEeccchhHHH-hh---hhcCccEEEEcCcchhHHH
Q 002535 156 IDPQQLQMVTIAIALREIGYAIQVYSLED-GRAHEVWRNIGVPVAILQTGREKAS-FV---NWLNYDGILVNSLEAKVVI 230 (911)
Q Consensus 156 ~GGae~~v~~LAk~L~~~GyeV~V~t~~~-g~~~~~~~~~gi~v~~l~~~~~l~~-lI---~~~kpDIIhvhs~~~~~~i 230 (911)
..|...++..+|+.|..--|.+.++.... +.+...|-+. +.+...+.+.. .+ ....||+++....... .+
T Consensus 10 RtGnt~QaiaLa~~l~r~eyttk~l~~~~l~~lP~~wl~~----yp~~~~~~l~~~~~~r~p~~~Pdl~I~aGrrta-~l 84 (329)
T COG3660 10 RTGNTHQAIALAEQLTRSEYTTKLLEYNNLAKLPNFWLAY----YPIHILRELFGPRLSRKPEQRPDLIITAGRRTA-PL 84 (329)
T ss_pred CCccHHHHHHHHHHhhccceEEEEeeccccccCchhhhhc----CccHhHHHhhcCccccCccCCCceEEecccchh-HH
Confidence 45788899999999987667777766542 2233233211 11111111111 12 2246999999988873 55
Q ss_pred HHHhhCCCCCCCEEEEEcCchhhHHHHHHHhhcchhhHhhHHHHHhhcceEEecCCccccccccCCCCCEEEeCCCCCCc
Q 002535 231 SNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRATVVVFPDYVLPMMYSAFDAGNYYVIPGSPAKA 310 (911)
Q Consensus 231 a~L~~~~~~giPvV~tiH~~~L~~~l~k~~~~~~d~lIs~~~~~~~~a~~vvfpn~~l~ii~~~id~~ki~VIpg~gVD~ 310 (911)
+..+.+++.++++|-..| ..+.+ +..|.++..+... +.....+..|+.-|.|++-+.
T Consensus 85 ~~~lkk~~~~~~vVqI~~-Prlp~-------~~fDlvivp~HD~---------------~~~~s~~~~Nilpi~Gs~h~V 141 (329)
T COG3660 85 AFYLKKKFGGIKVVQIQD-PRLPY-------NHFDLVIVPYHDW---------------REELSDQGPNILPINGSPHNV 141 (329)
T ss_pred HHHHHHhcCCceEEEeeC-CCCCc-------ccceEEeccchhh---------------hhhhhccCCceeeccCCCCcc
Confidence 566656566755554444 22111 1122221111100 000011234666665544332
Q ss_pred ccccccCchhhHHHHHhhCCCCCCeEEEEEEeccccccccccHHHHHHHHHHhhhhcccCCCCCCCEEEEEEe-CCCCCc
Q 002535 311 WEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILS-GDSTSN 389 (911)
Q Consensus 311 ~~f~~~~~~~k~~lR~~lgi~~d~~vIL~VGsrl~~~KGiKg~dlLLeAl~~L~~~~p~~~~~~~~vkLvIVG-G~~~e~ 389 (911)
. ..... ...+..+.++..+..++-++||+.... -...-+.+.+....+.+.+.+ ....+++-- -...
T Consensus 142 t--~~~lA-a~~e~~~~~~p~~rq~vAVlVGg~nk~--f~~~~d~a~q~~~~l~k~l~~-----~g~~~lisfSRRTp-- 209 (329)
T COG3660 142 T--SQRLA-ALREAFKHLLPLPRQRVAVLVGGNNKA--FVFQEDKAHQFASLLVKILEN-----QGGSFLISFSRRTP-- 209 (329)
T ss_pred c--HHHhh-hhHHHHHhhCCCCCceEEEEecCCCCC--CccCHHHHHHHHHHHHHHHHh-----CCceEEEEeecCCc--
Confidence 1 00111 112333455566778888888854332 112223344444444333321 125666655 2222
Q ss_pred hHHHHHHHHHH-cCCCCccEEEcccc---ccHHHHHHHcCeeEEcccCCcCCccHHHHHHHHcCCCEEecCCCc
Q 002535 390 YSVVIEAIAHN-LHYPLGVVKHMAAE---GDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSN 459 (911)
Q Consensus 390 Y~~~Le~la~~-lgL~~~~V~flG~v---~dV~~~L~~ADVfVlPS~~E~qGFplvLLEAMA~G~PVIaTd~gG 459 (911)
+.++++.+. +.-.. -+.+-+.. +-...++++||.+|.....- +-.-||.|.|+||-+....+
T Consensus 210 --~~~~s~l~~~l~s~~-~i~w~~~d~g~NPY~~~La~Adyii~TaDSi-----nM~sEAasTgkPv~~~~~~~ 275 (329)
T COG3660 210 --DTVKSILKNNLNSSP-GIVWNNEDTGYNPYIDMLAAADYIISTADSI-----NMCSEAASTGKPVFILEPPN 275 (329)
T ss_pred --HHHHHHHHhccccCc-eeEeCCCCCCCCchHHHHhhcceEEEecchh-----hhhHHHhccCCCeEEEecCC
Confidence 555666554 33333 34444432 34678999999999876332 35679999999997754433
No 140
>PF11440 AGT: DNA alpha-glucosyltransferase; InterPro: IPR016223 The T4 bacteriophage of E.coli protects its DNA via two glycosyltransferases which glucosylate 5-hydroxymethyl cytosines (5-HMC) using UDP-glucose. These two proteins are the retaining alpha-glucosyltransferase (AGT) and the inverting beta-glucosyltransferase (BGT). The proteins in this family are AGT. AGT adopts the GT-B fold and binds both the sugar donor and acceptor to the C-terminal domain. There is evidence for a role of AGT in the base-flipping mechanism and for its specific recognition of the acceptor base [].; PDB: 1YA6_B 1Y8Z_B 1Y6F_B 1XV5_A 1Y6G_B.
Probab=95.90 E-value=1.3 Score=48.51 Aligned_cols=302 Identities=11% Similarity=0.079 Sum_probs=137.8
Q ss_pred hHHHHHHHHHHHHHHCCCeEEEEEeCCCcchhhh--hhcCceEEEeccchhHHHhhhh-cCccEEEEcCcchhH------
Q 002535 158 PQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVW--RNIGVPVAILQTGREKASFVNW-LNYDGILVNSLEAKV------ 228 (911)
Q Consensus 158 Gae~~v~~LAk~L~~~GyeV~V~t~~~g~~~~~~--~~~gi~v~~l~~~~~l~~lI~~-~kpDIIhvhs~~~~~------ 228 (911)
|+.+.....-.++.+.|++++++...+....... +.-.+.+..+.+ ..+...++. .++||+++++..+..
T Consensus 2 GVTr~a~e~~~wf~KNg~~~~i~~a~e~sftR~dsH~~~~~si~k~~~-~e~de~v~~vN~yDI~m~nSvPa~~vqE~~i 80 (355)
T PF11440_consen 2 GVTRNALEMRDWFDKNGVEFTIVSADEKSFTRPDSHDSKSFSIPKYLA-KEYDETVKKVNDYDIVMFNSVPATKVQEAII 80 (355)
T ss_dssp HHHHHHHHHHHHHHHTT-EEEEEEETSS--TTTTSSS-TTTEEEE-TT-THHHHHHHHHTSSSEEEEEE--BTTS-HHHH
T ss_pred CccccHHHHHHHHHhcCCeeEEEEecccccCCccccccceeeeehhhH-HHHHHHHHHhhccCEEEEecccCchHHHHHH
Confidence 6777888888999999999999998764322111 111222333322 222333333 489999999865421
Q ss_pred -HHHHHhhCCCCCCCEEEEEcCchhhHHHHHHHhhcchhhHhhHHHHHhhcceEEecCCc---c-----ccccccCCC-C
Q 002535 229 -VISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRATVVVFPDYV---L-----PMMYSAFDA-G 298 (911)
Q Consensus 229 -~ia~L~~~~~~giPvV~tiH~~~L~~~l~k~~~~~~d~lIs~~~~~~~~a~~vvfpn~~---l-----~ii~~~id~-~ 298 (911)
.+-.++......+++|...|+.... . +.+ +.......++++.+.--+.. . ..+...... +
T Consensus 81 NnY~kii~~Ik~~ik~V~~~Hdh~~l-s----I~r-----n~~le~~m~~~DvIfshs~~g~f~kv~m~~l~Ps~~~l~~ 150 (355)
T PF11440_consen 81 NNYEKIIKKIKPSIKVVGFMHDHNKL-S----IDR-----NPYLEGTMNEMDVIFSHSDNGWFSKVLMKELLPSKVSLFD 150 (355)
T ss_dssp HHHHHHHHCS-TTSEEEEEE---SHH-H----HTT-----BSSHHHHHHH-SEEEES-TTSHHHHTHHHHHS-SS--SSS
T ss_pred HHHHHHHHhccccceeEEEeecccee-e----ccc-----cccHHHHHHhhcEEEeccccchHHHHHHHhhccccCchhh
Confidence 1223343333466778888862110 0 000 01122233444432211111 0 011111111 2
Q ss_pred CEEEeCCCCCCcccccccCchhhHHHHHhhCCCCCCeEE---EEEEeccccccccccHHHHHHHHHHhhhhcccCCCCCC
Q 002535 299 NYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVI---AIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNS 375 (911)
Q Consensus 299 ki~VIpg~gVD~~~f~~~~~~~k~~lR~~lgi~~d~~vI---L~VGsrl~~~KGiKg~dlLLeAl~~L~~~~p~~~~~~~ 375 (911)
++...|- -+...++..-.+.|..+-.+...+.. +|+|+.... ||...+++.-+...+. ++
T Consensus 151 ~i~~~p~------v~nfqpp~~i~~~Rstywkd~se~nmnv~~yigR~Tt~----kG~~~mfD~h~~~lK~-~~------ 213 (355)
T PF11440_consen 151 RIKKFPM------VFNFQPPMDINKYRSTYWKDVSEKNMNVNRYIGRQTTW----KGPRRMFDLHEKILKP-AG------ 213 (355)
T ss_dssp -------------EEE----B-HHHHHHHH---GGGSEEEEEEEE--SSGG----G-HHHHHHHHHHTTTT-TT------
T ss_pred hhhhcce------eeecCCcccHHHHHHHHhhhhHhhhcccceeeeeeeee----cCcHHHhhhHHHhcCC-cc------
Confidence 2222220 01111111123445555444344444 899966666 9998888888776654 44
Q ss_pred CEEEEEEe-CCCCCchHHHHHHH-----------HHHcC-CCCccEEEcc-cc-ccHHHHHHHcCeeEEccc-----CCc
Q 002535 376 PIKVMILS-GDSTSNYSVVIEAI-----------AHNLH-YPLGVVKHMA-AE-GDVDSVLNTADVVIYGSF-----LEE 435 (911)
Q Consensus 376 ~vkLvIVG-G~~~e~Y~~~Le~l-----------a~~lg-L~~~~V~flG-~v-~dV~~~L~~ADVfVlPS~-----~E~ 435 (911)
++-++-| .... ..- .+.+. +.+.. -+++.+-.+| ++ ++..+.++.+-....-+. .+.
T Consensus 214 -~~t~~~GierS~-A~~-~i~d~~~~~~y~~~~~~~~~~~~pN~~~~v~~~Yi~~E~~~~Maks~Fgy~~~k~~~~y~~r 290 (355)
T PF11440_consen 214 -FKTIMEGIERSP-AKI-SIKDHGIPYEYYPKLDCDEPKPAPNSPVPVYGPYIRSEGLERMAKSLFGYQLSKLQQKYLQR 290 (355)
T ss_dssp --EEEEE---SST-HHH-HHHHTT--EEEE-CTGGGG---SSS--EEEESS--HHHHHHHHHTEEEEEE-----GGG-SS
T ss_pred -hhHHhhhhhcCC-cee-eeecCCcccccCccccccCcccCCCCcceecchhhhHHHHHHHhhccceeecHHHHHHHHHh
Confidence 7888888 3221 111 11111 00111 1233566777 34 778888888766654441 222
Q ss_pred CCccHHHHHHHHcCC-CEEecCCCccc-------cccccCccEEEEcCCCHHHHHHHHHHHHHc
Q 002535 436 QTFPEILVKALCFRK-PIIAPDLSNIR-------KYVDDRVNGYLFPKENIKALTHIILQVITN 491 (911)
Q Consensus 436 qGFplvLLEAMA~G~-PVIaTd~gGi~-------EiV~dg~nGlLv~~~D~eaLAeaI~~LLsd 491 (911)
..-.+-+|..|||+ ||.-...|... -++.+....+.++.+|.++-.+.|.++.++
T Consensus 291 -~mEYt~iE~~A~GtIPVF~k~~GEN~r~~~D~~~~~~~~~~~I~~De~dle~T~ekl~E~a~~ 353 (355)
T PF11440_consen 291 -SMEYTQIELIAVGTIPVFDKSWGENNRFTLDGTRYIDHPYSAIYFDENDLESTVEKLIEVANN 353 (355)
T ss_dssp ----HHHHHHHHCTSEEEEEHHHHHHSB-TTTSSBGGSS--S-EEE-TTSHHHHHHHHHHHHT-
T ss_pred -hhhhheeeeeeeceeeeeeccccccceeeecCceeeccCcceeEeccchHHHHHHHHHHHhcc
Confidence 46789999999998 77766554332 345555567889989999999999988776
No 141
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=95.78 E-value=5.7 Score=46.69 Aligned_cols=96 Identities=11% Similarity=0.170 Sum_probs=60.1
Q ss_pred HHHHHHHHHHcCCCCccEEEc-c-c-cccHHHHHHHcCeeEEcccCCcCCccHHHHHHHHcCCCEEecCCC----ccccc
Q 002535 391 SVVIEAIAHNLHYPLGVVKHM-A-A-EGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLS----NIRKY 463 (911)
Q Consensus 391 ~~~Le~la~~lgL~~~~V~fl-G-~-v~dV~~~L~~ADVfVlPS~~E~qGFplvLLEAMA~G~PVIaTd~g----Gi~Ei 463 (911)
....+++.+.+.-+. +++++ . + ..++..+++.||++|-.- .- .++=|++.|+|+|+-... ++-+.
T Consensus 293 ~~~~~~l~~~~~~~~-~~~vi~~~~~~~e~~~iIs~~dl~ig~R-lH------a~I~a~~~gvP~i~i~Y~~K~~~~~~~ 364 (426)
T PRK10017 293 RMVALNLRQHVSDPA-RYHVVMDELNDLEMGKILGACELTVGTR-LH------SAIISMNFGTPAIAINYEHKSAGIMQQ 364 (426)
T ss_pred HHHHHHHHHhccccc-ceeEecCCCChHHHHHHHhhCCEEEEec-ch------HHHHHHHcCCCEEEeeehHHHHHHHHH
Confidence 344556666555333 34332 2 2 257779999999987543 33 677899999999986543 22233
Q ss_pred cccCccEEEEcC--CCHHHHHHHHHHHHHcCCCcHHHH
Q 002535 464 VDDRVNGYLFPK--ENIKALTHIILQVITNGKISPFAR 499 (911)
Q Consensus 464 V~dg~nGlLv~~--~D~eaLAeaI~~LLsd~~~p~~~~ 499 (911)
+. ...++++. -+.++|.+.+.+++++ .+..+
T Consensus 365 lg--~~~~~~~~~~l~~~~Li~~v~~~~~~---r~~~~ 397 (426)
T PRK10017 365 LG--LPEMAIDIRHLLDGSLQAMVADTLGQ---LPALN 397 (426)
T ss_pred cC--CccEEechhhCCHHHHHHHHHHHHhC---HHHHH
Confidence 32 22343433 3578899999999998 55544
No 142
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=95.50 E-value=1.3 Score=49.84 Aligned_cols=242 Identities=14% Similarity=0.130 Sum_probs=127.6
Q ss_pred hHHHHHHHHHHHHHH-CCCeEEEEEeCCCcchhhhhhc--CceEEEeccchhHHHhhhhcCccEEEEcCcchhHHHHHHh
Q 002535 158 PQQLQMVTIAIALRE-IGYAIQVYSLEDGRAHEVWRNI--GVPVAILQTGREKASFVNWLNYDGILVNSLEAKVVISNIM 234 (911)
Q Consensus 158 Gae~~v~~LAk~L~~-~GyeV~V~t~~~g~~~~~~~~~--gi~v~~l~~~~~l~~lI~~~kpDIIhvhs~~~~~~ia~L~ 234 (911)
|.+.+...+|++|.. .++++..+.... + +..+ ................+....||+|+....... .....+
T Consensus 2 Gh~~Q~~GLa~aL~~~~~~~~~~v~~~~-~----~~~lp~~~~~~~~~~~~~~~~~~~~~~pdLiIsaGr~t~-~~~~~l 75 (311)
T PF06258_consen 2 GHENQSLGLAEALGRLTPYEIKRVDVRR-P----WRWLPRLLPAPLRALLKPFSPALEPPWPDLIISAGRRTA-PAALAL 75 (311)
T ss_pred chHHHHHHHHHHhcCccCcceeEecccc-c----hhhccccccchHHHhhhcccccccCCCCcEEEECCCchH-HHHHHH
Confidence 678899999999987 377877776543 1 1111 000000000000111234467999999988884 444444
Q ss_pred hCCCCC-CCEEEEEcCchhhHHHHHHHhhcchhhHhhHHHHHhhcceEEecCCccccccccC-CCCCEEEeCCCCCCccc
Q 002535 235 QEPFKS-LPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRATVVVFPDYVLPMMYSAF-DAGNYYVIPGSPAKAWE 312 (911)
Q Consensus 235 ~~~~~g-iPvV~tiH~~~L~~~l~k~~~~~~d~lIs~~~~~~~~a~~vvfpn~~l~ii~~~i-d~~ki~VIpg~gVD~~~ 312 (911)
.+...+ +++|+..+- +.....+ +.++.|... .. ...|+....+.+
T Consensus 76 ~r~~gg~~~~V~i~~P--------~~~~~~F--------------Dlvi~p~HD------~~~~~~Nvl~t~ga~----- 122 (311)
T PF06258_consen 76 RRASGGRTKTVQIMDP--------RLPPRPF--------------DLVIVPEHD------RLPRGPNVLPTLGAP----- 122 (311)
T ss_pred HHHcCCCceEEEEcCC--------CCCcccc--------------CEEEECccc------CcCCCCceEecccCC-----
Confidence 333333 466665551 1111222 333333211 22 234555554321
Q ss_pred ccccCchh----hHHHHHhhCCCCCCeEEEEEEecc-ccccccccHH---HHHHHHHHhhhhcccCCCCCCCEEEEEEeC
Q 002535 313 ADTNMDLY----NDTVRVKMGFKPDDLVIAIVGTQF-MYRGLWLEHA---LILRALLPLFSEVSVENESNSPIKVMILSG 384 (911)
Q Consensus 313 f~~~~~~~----k~~lR~~lgi~~d~~vIL~VGsrl-~~~KGiKg~d---lLLeAl~~L~~~~p~~~~~~~~vkLvIVGG 384 (911)
+...+.. +..+...+...+.+.+.+.+|+-. .+. .+-+ .+++.+..+.+.++ ..+.|...
T Consensus 123 -~~i~~~~l~~a~~~~~~~~~~l~~p~~avLIGG~s~~~~---~~~~~~~~l~~~l~~~~~~~~--------~~~~vttS 190 (311)
T PF06258_consen 123 -NRITPERLAEAAAAWAPRLAALPRPRVAVLIGGDSKHYR---WDEEDAERLLDQLAALAAAYG--------GSLLVTTS 190 (311)
T ss_pred -CcCCHHHHHHHHHhhhhhhccCCCCeEEEEECcCCCCcc---cCHHHHHHHHHHHHHHHHhCC--------CeEEEEcC
Confidence 1111211 233334555556666777777422 222 3333 56666666666543 57888883
Q ss_pred -CCCCchHHHHHHHHHHcCCCCccEEEccc-c-ccHHHHHHHcCeeEEcccCCcCCccHHHHHHHHcCCCEEecCCCc
Q 002535 385 -DSTSNYSVVIEAIAHNLHYPLGVVKHMAA-E-GDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSN 459 (911)
Q Consensus 385 -~~~e~Y~~~Le~la~~lgL~~~~V~flG~-v-~dV~~~L~~ADVfVlPS~~E~qGFplvLLEAMA~G~PVIaTd~gG 459 (911)
-... +....+.+.++-.. .+.+... - +-+..+|+.||.++.+.-. -.-+.||.+.|+||..-...+
T Consensus 191 RRTp~---~~~~~L~~~~~~~~-~~~~~~~~~~nPy~~~La~ad~i~VT~DS-----vSMvsEA~~tG~pV~v~~l~~ 259 (311)
T PF06258_consen 191 RRTPP---EAEAALRELLKDNP-GVYIWDGTGENPYLGFLAAADAIVVTEDS-----VSMVSEAAATGKPVYVLPLPG 259 (311)
T ss_pred CCCcH---HHHHHHHHhhcCCC-ceEEecCCCCCcHHHHHHhCCEEEEcCcc-----HHHHHHHHHcCCCEEEecCCC
Confidence 3331 22333333332233 5633332 2 4488999999999998732 346789999999998877665
No 143
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.00 E-value=0.76 Score=54.83 Aligned_cols=184 Identities=13% Similarity=0.123 Sum_probs=123.5
Q ss_pred HHHhhCCCCCCeEEEEEEeccccccccccHHHHHHHHHHhhhhcccCCCCCCCEEEEEEe-CCCCCchHHHHHHHHHHcC
Q 002535 324 VRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLH 402 (911)
Q Consensus 324 lR~~lgi~~d~~vIL~VGsrl~~~KGiKg~dlLLeAl~~L~~~~p~~~~~~~~vkLvIVG-G~~~e~Y~~~Le~la~~lg 402 (911)
.|..++++++.++...+..+ + |=-...++....+.+..|+ -.|++.- ....+ ..++..+.++|
T Consensus 749 ~r~~y~Lp~d~vvf~~FNqL--y----KidP~~l~~W~~ILk~VPn-------S~LwllrfPa~ge---~rf~ty~~~~G 812 (966)
T KOG4626|consen 749 TRSQYGLPEDAVVFCNFNQL--Y----KIDPSTLQMWANILKRVPN-------SVLWLLRFPAVGE---QRFRTYAEQLG 812 (966)
T ss_pred CCCCCCCCCCeEEEeechhh--h----cCCHHHHHHHHHHHHhCCc-------ceeEEEeccccch---HHHHHHHHHhC
Confidence 35578888887666555522 2 3334568888888888888 5666666 21111 67889999999
Q ss_pred CCCccEEEcccc--ccHHHHHHHcCeeEEcccCCcCCccHHHHHHHHcCCCEEecCCCccc------cccccCccEEEEc
Q 002535 403 YPLGVVKHMAAE--GDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSNIR------KYVDDRVNGYLFP 474 (911)
Q Consensus 403 L~~~~V~flG~v--~dV~~~L~~ADVfVlPS~~E~qGFplvLLEAMA~G~PVIaTd~gGi~------EiV~dg~nGlLv~ 474 (911)
++..+|.|..-. +|=..-..-+||.+-+....+ -.+-+|.+-+|+|+|+-...... -+..-|. |-++
T Consensus 813 l~p~riifs~va~k~eHvrr~~LaDv~LDTplcnG---hTTg~dvLw~GvPmVTmpge~lAsrVa~Sll~~~Gl-~hli- 887 (966)
T KOG4626|consen 813 LEPDRIIFSPVAAKEEHVRRGQLADVCLDTPLCNG---HTTGMDVLWAGVPMVTMPGETLASRVAASLLTALGL-GHLI- 887 (966)
T ss_pred CCccceeeccccchHHHHHhhhhhhhcccCcCcCC---cccchhhhccCCceeecccHHHHHHHHHHHHHHccc-HHHH-
Confidence 998899998854 555556778899886655442 23456888999999986533221 1111122 3333
Q ss_pred CCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH-H--hcCHHHHHHHHHHHHHHHhcC
Q 002535 475 KENIKALTHIILQVITNGKISPFARNIASIGRRSV-K--NLMALETIEGYAMLLENVLKL 531 (911)
Q Consensus 475 ~~D~eaLAeaI~~LLsd~~~p~~~~~mg~~ar~~a-e--~Fs~e~ia~~y~~Lye~vL~~ 531 (911)
..+-++..+.-.++-.| .+..+++...-+..- . -|+....+..++++|.+.-+.
T Consensus 888 ak~~eEY~~iaV~Latd---~~~L~~lr~~l~~~r~~splfd~~q~~~~LE~~y~~MW~~ 944 (966)
T KOG4626|consen 888 AKNREEYVQIAVRLATD---KEYLKKLRAKLRKARASSPLFDTKQYAKGLERLYLQMWKK 944 (966)
T ss_pred hhhHHHHHHHHHHhhcC---HHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHHHHHHH
Confidence 34788888888888888 777777766655443 2 288888898888888876543
No 144
>PLN02448 UDP-glycosyltransferase family protein
Probab=94.43 E-value=0.75 Score=54.46 Aligned_cols=130 Identities=11% Similarity=0.046 Sum_probs=76.1
Q ss_pred CCCeEEEEEEeccccccccccHHHHHHHHHHhhhhcccCCCCCCCEEEEEEe-CCCCCchHHHHHHHHHHcCCCCccEEE
Q 002535 332 PDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKH 410 (911)
Q Consensus 332 ~d~~vIL~VGsrl~~~KGiKg~dlLLeAl~~L~~~~p~~~~~~~~vkLvIVG-G~~~e~Y~~~Le~la~~lgL~~~~V~f 410 (911)
+...+.+.+|+..... ...+..++++++... ..++++. ++. ..+++.. .+ ++.+
T Consensus 273 ~~~vvyvsfGs~~~~~--~~~~~~~~~~l~~~~------------~~~lw~~~~~~-----~~~~~~~-----~~-~~~v 327 (459)
T PLN02448 273 EGSVLYVSLGSFLSVS--SAQMDEIAAGLRDSG------------VRFLWVARGEA-----SRLKEIC-----GD-MGLV 327 (459)
T ss_pred CCceEEEeecccccCC--HHHHHHHHHHHHhCC------------CCEEEEEcCch-----hhHhHhc-----cC-CEEE
Confidence 3456778888654331 123344444444332 4666655 431 1222221 22 4666
Q ss_pred ccccccHHHHHHHcCeeEEcccCCcCCccHHHHHHHHcCCCEEecCCC----ccccccccC-ccEEEEc-------CCCH
Q 002535 411 MAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLS----NIRKYVDDR-VNGYLFP-------KENI 478 (911)
Q Consensus 411 lG~v~dV~~~L~~ADVfVlPS~~E~qGFplvLLEAMA~G~PVIaTd~g----Gi~EiV~dg-~nGlLv~-------~~D~ 478 (911)
.++. .-.++|...++-.+-+. |--++++||+++|+|+|+-... .....+.+. ..|+-+. .-+.
T Consensus 328 ~~w~-pQ~~iL~h~~v~~fvtH----gG~nS~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~g~G~~~~~~~~~~~~~~~ 402 (459)
T PLN02448 328 VPWC-DQLKVLCHSSVGGFWTH----CGWNSTLEAVFAGVPMLTFPLFWDQPLNSKLIVEDWKIGWRVKREVGEETLVGR 402 (459)
T ss_pred eccC-CHHHHhccCccceEEec----CchhHHHHHHHcCCCEEeccccccchhhHHHHHHHhCceEEEecccccCCcCcH
Confidence 6776 34457777776333342 2356899999999999996654 344445442 3365553 1367
Q ss_pred HHHHHHHHHHHHc
Q 002535 479 KALTHIILQVITN 491 (911)
Q Consensus 479 eaLAeaI~~LLsd 491 (911)
+++++++.+++.+
T Consensus 403 ~~l~~av~~vl~~ 415 (459)
T PLN02448 403 EEIAELVKRFMDL 415 (459)
T ss_pred HHHHHHHHHHhcC
Confidence 9999999999986
No 145
>PLN02670 transferase, transferring glycosyl groups
Probab=94.20 E-value=0.62 Score=55.36 Aligned_cols=111 Identities=10% Similarity=0.090 Sum_probs=69.9
Q ss_pred EEEccccccHHHHHHHcCeeEEcccCCcCCccHHHHHHHHcCCCEEecCCC----ccccccccCccEEEEcC------CC
Q 002535 408 VKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLS----NIRKYVDDRVNGYLFPK------EN 477 (911)
Q Consensus 408 V~flG~v~dV~~~L~~ADVfVlPS~~E~qGFplvLLEAMA~G~PVIaTd~g----Gi~EiV~dg~nGlLv~~------~D 477 (911)
+.+.++..+ .++|+...+-.+-++ |--++++||+++|+|+|+-... .....+..-..|+.++. -+
T Consensus 341 ~vv~~W~PQ-~~IL~H~~v~~FvtH----cGwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~v~~~g~Gv~l~~~~~~~~~~ 415 (472)
T PLN02670 341 MIHVGWVPQ-VKILSHESVGGFLTH----CGWNSVVEGLGFGRVLILFPVLNEQGLNTRLLHGKKLGLEVPRDERDGSFT 415 (472)
T ss_pred eEEeCcCCH-HHHhcCcccceeeec----CCcchHHHHHHcCCCEEeCcchhccHHHHHHHHHcCeeEEeeccccCCcCc
Confidence 666677633 346766666444442 2357899999999999996543 34445544556877753 25
Q ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhc----CHHHHHHHHHHHHHH
Q 002535 478 IKALTHIILQVITNGKISPFARNIASIGRRSVKNL----MALETIEGYAMLLEN 527 (911)
Q Consensus 478 ~eaLAeaI~~LLsd~~~p~~~~~mg~~ar~~ae~F----s~e~ia~~y~~Lye~ 527 (911)
.+++.++|.+++.+ ++ -.++.+++++..+.+ ...++++.+.+.+.+
T Consensus 416 ~e~i~~av~~vm~~---~~-g~~~r~~a~~l~~~~~~~~~~~~~~~~~~~~l~~ 465 (472)
T PLN02670 416 SDSVAESVRLAMVD---DA-GEEIRDKAKEMRNLFGDMDRNNRYVDELVHYLRE 465 (472)
T ss_pred HHHHHHHHHHHhcC---cc-hHHHHHHHHHHHHHHhCcchhHHHHHHHHHHHHH
Confidence 89999999999987 42 334555555555444 444455555554444
No 146
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=93.43 E-value=7.2 Score=42.57 Aligned_cols=90 Identities=19% Similarity=0.159 Sum_probs=57.3
Q ss_pred cHHHHHHHHHHhhhhcccCCCCCCCEEEEEEeCCCCCchHHHHHHHHHHcCCCCccEEEccc--cccHHHHHHHcCeeEE
Q 002535 352 EHALILRALLPLFSEVSVENESNSPIKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAA--EGDVDSVLNTADVVIY 429 (911)
Q Consensus 352 g~dlLLeAl~~L~~~~p~~~~~~~~vkLvIVGG~~~e~Y~~~Le~la~~lgL~~~~V~flG~--v~dV~~~L~~ADVfVl 429 (911)
..+...+.+..|.++ + ++++++|++... +..+++.+..+-.+ .+.+.|. ..++..+++.||++|.
T Consensus 138 ~~~~~~~l~~~l~~~--~-------~~ivl~g~~~e~---~~~~~i~~~~~~~~-~~~~~~~~~l~e~~~li~~~~l~I~ 204 (279)
T cd03789 138 PAERFAALADRLLAR--G-------ARVVLTGGPAER---ELAEEIAAALGGPR-VVNLAGKTSLRELAALLARADLVVT 204 (279)
T ss_pred CHHHHHHHHHHHHHC--C-------CEEEEEechhhH---HHHHHHHHhcCCCc-cccCcCCCCHHHHHHHHHhCCEEEe
Confidence 345556777777654 3 788999965442 34445555432222 3555664 3889999999999998
Q ss_pred cccCCcCCccHHHHHHHHcCCCEEecCCCccc
Q 002535 430 GSFLEEQTFPEILVKALCFRKPIIAPDLSNIR 461 (911)
Q Consensus 430 PS~~E~qGFplvLLEAMA~G~PVIaTd~gGi~ 461 (911)
+- ...+--|.+.|+|+|+--.+..+
T Consensus 205 ~D-------sg~~HlA~a~~~p~i~l~g~~~~ 229 (279)
T cd03789 205 ND-------SGPMHLAAALGTPTVALFGPTDP 229 (279)
T ss_pred eC-------CHHHHHHHHcCCCEEEEECCCCc
Confidence 74 12444557999999985544333
No 147
>KOG1050 consensus Trehalose-6-phosphate synthase component TPS1 and related subunits [Carbohydrate transport and metabolism]
Probab=92.50 E-value=7 Score=48.86 Aligned_cols=186 Identities=10% Similarity=0.073 Sum_probs=117.4
Q ss_pred EEEeCCCCCCcccccccCchh-----hHHHHHhhCCCCCCeEEEEEEeccccccccccHHHHHHHHHHhhhhcccCCCCC
Q 002535 300 YYVIPGSPAKAWEADTNMDLY-----NDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESN 374 (911)
Q Consensus 300 i~VIpg~gVD~~~f~~~~~~~-----k~~lR~~lgi~~d~~vIL~VGsrl~~~KGiKg~dlLLeAl~~L~~~~p~~~~~~ 374 (911)
+...| .|+|...+....... ..+++..+ .+..+++.+- ++... ||...=+.|+.++..++|+ -.
T Consensus 241 v~~~p-igid~~r~v~~~~~~~~~~~~~ei~~~~---~g~klilgvD-~~d~~---kg~~~Kl~a~e~~L~~~pe---~~ 309 (732)
T KOG1050|consen 241 VKALP-IGIDVQRFVKLLELPYVGSKGMEIKEPF---KGKKLILGVD-RLDSI---KGIQLKLLAFEQFLEEYPE---WI 309 (732)
T ss_pred eeecc-cccchHHhhccccchhHHHHHHHHhhhc---cCCceEeccc-ccccc---cCchHHHHHHHHHHHhChh---hh
Confidence 33444 577776554433222 22222222 3555666666 66666 4444448888888888886 23
Q ss_pred CCEEEEEEe-CCCCC--ch---HHHHHHHHHH----cCCCC-ccEEEcc-cc--ccHHHHHHHcCeeEEcccCCcCCccH
Q 002535 375 SPIKVMILS-GDSTS--NY---SVVIEAIAHN----LHYPL-GVVKHMA-AE--GDVDSVLNTADVVIYGSFLEEQTFPE 440 (911)
Q Consensus 375 ~~vkLvIVG-G~~~e--~Y---~~~Le~la~~----lgL~~-~~V~flG-~v--~dV~~~L~~ADVfVlPS~~E~qGFpl 440 (911)
.++.++.+. +...+ .| ...+...+.+ .+-.. ..|.++- .. .++.+++..+|+.+..+..+ |..+
T Consensus 310 ~kVvliqi~~~~~~~~~~v~~~k~~v~~~v~rIn~~f~~~~~~pV~~~~~~~~~~~l~a~~~Vaev~~v~s~rd--Gmnl 387 (732)
T KOG1050|consen 310 DKVVLIQIENPKRTDGKEVEELKFCVSVHVRRINEKFGSASYQPVHSLLKDLPFLELLALYKVAEVCPVTSWRD--GMNL 387 (732)
T ss_pred ceEEEEEEecCCcccchHHHHHHHHhHhhhhhhhhccCCcccceEEEeeccCCHHHHhhhHHhhhheeeccccc--ccch
Confidence 345666655 32221 11 2222222221 11111 1233332 22 67889999999999999988 7999
Q ss_pred HHHHHHHcC----CCEEecCCCccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHH
Q 002535 441 ILVKALCFR----KPIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIAS 503 (911)
Q Consensus 441 vLLEAMA~G----~PVIaTd~gGi~EiV~dg~nGlLv~~~D~eaLAeaI~~LLsd~~~p~~~~~mg~ 503 (911)
+.+|..+|. .+.|.+..-|..+..++ ...++.+.|.++++.+|...++. ++...++..
T Consensus 388 ~~~e~i~~~~~~~~~lVlsef~G~~~tl~d--~aivvnpw~~~~~~~~i~~al~~---s~~e~~~r~ 449 (732)
T KOG1050|consen 388 VFLEYILCQENKKSVLVLSEFIGDDTTLED--AAIVVNPWDGDEFAILISKALTM---SDEERELRE 449 (732)
T ss_pred hhhHHHHhhcccCCceEEeeeccccccccc--cCEEECCcchHHHHHHHHHHhhc---CHHHHhhcc
Confidence 999999885 56788888888887766 46789999999999999999998 766655543
No 148
>PLN03004 UDP-glycosyltransferase
Probab=92.30 E-value=1.3 Score=52.27 Aligned_cols=80 Identities=15% Similarity=0.073 Sum_probs=57.0
Q ss_pred cEEEccccccHHHHHHHcCeeEEcccCCcCCccHHHHHHHHcCCCEEecCC----Ccccccccc-CccEEEEcC-----C
Q 002535 407 VVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDL----SNIRKYVDD-RVNGYLFPK-----E 476 (911)
Q Consensus 407 ~V~flG~v~dV~~~L~~ADVfVlPS~~E~qGFplvLLEAMA~G~PVIaTd~----gGi~EiV~d-g~nGlLv~~-----~ 476 (911)
++.+.+|..+ .++|+.+++-.+-++ |--++++||+++|+|+|+-.. ......+.+ -..|+.++. -
T Consensus 335 g~~v~~W~PQ-~~iL~H~~v~~FvTH----~G~nS~lEal~~GVP~v~~P~~~DQ~~na~~~~~~~g~g~~l~~~~~~~~ 409 (451)
T PLN03004 335 GMVVKSWAPQ-VPVLNHKAVGGFVTH----CGWNSILEAVCAGVPMVAWPLYAEQRFNRVMIVDEIKIAISMNESETGFV 409 (451)
T ss_pred cEEEEeeCCH-HHHhCCCccceEecc----CcchHHHHHHHcCCCEEeccccccchhhHHHHHHHhCceEEecCCcCCcc
Confidence 5777787733 358888888555453 225689999999999999654 344455543 245877753 2
Q ss_pred CHHHHHHHHHHHHHc
Q 002535 477 NIKALTHIILQVITN 491 (911)
Q Consensus 477 D~eaLAeaI~~LLsd 491 (911)
+.++++++|.+++.+
T Consensus 410 ~~e~l~~av~~vm~~ 424 (451)
T PLN03004 410 SSTEVEKRVQEIIGE 424 (451)
T ss_pred CHHHHHHHHHHHhcC
Confidence 689999999999987
No 149
>PLN02208 glycosyltransferase family protein
Probab=91.98 E-value=4.2 Score=48.00 Aligned_cols=94 Identities=9% Similarity=0.038 Sum_probs=59.7
Q ss_pred cEEEccccccHHHHHHHcCeeEEcccCCcCCccHHHHHHHHcCCCEEecCCC----cccccccc-CccEEEEcC-----C
Q 002535 407 VVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLS----NIRKYVDD-RVNGYLFPK-----E 476 (911)
Q Consensus 407 ~V~flG~v~dV~~~L~~ADVfVlPS~~E~qGFplvLLEAMA~G~PVIaTd~g----Gi~EiV~d-g~nGlLv~~-----~ 476 (911)
++.+.+|..+. ++|+...+-++-++ |--++++||+++|+|+|+-..- ....++.+ -..|+.++. -
T Consensus 312 g~~v~~W~PQ~-~iL~H~~v~~FvtH----cG~nS~~Eai~~GVP~l~~P~~~DQ~~na~~~~~~~g~gv~~~~~~~~~~ 386 (442)
T PLN02208 312 GVVWGGWVQQP-LILDHPSIGCFVNH----CGPGTIWESLVSDCQMVLIPFLSDQVLFTRLMTEEFEVSVEVSREKTGWF 386 (442)
T ss_pred CcEeeccCCHH-HHhcCCccCeEEcc----CCchHHHHHHHcCCCEEecCcchhhHHHHHHHHHHhceeEEeccccCCcC
Confidence 46666665333 46666666555453 2357899999999999996543 33444333 345766653 2
Q ss_pred CHHHHHHHHHHHHHcCCCc-HHHHHHHHHHHHH
Q 002535 477 NIKALTHIILQVITNGKIS-PFARNIASIGRRS 508 (911)
Q Consensus 477 D~eaLAeaI~~LLsd~~~p-~~~~~mg~~ar~~ 508 (911)
+.++++++|.+++++ + +..+++.+++++.
T Consensus 387 ~~~~l~~ai~~~m~~---~~e~g~~~r~~~~~~ 416 (442)
T PLN02208 387 SKESLSNAIKSVMDK---DSDLGKLVRSNHTKL 416 (442)
T ss_pred cHHHHHHHHHHHhcC---CchhHHHHHHHHHHH
Confidence 678999999999987 4 3344555554443
No 150
>PLN02210 UDP-glucosyl transferase
Probab=91.95 E-value=3.1 Score=49.28 Aligned_cols=106 Identities=8% Similarity=0.058 Sum_probs=64.8
Q ss_pred EEEccccccHHHHHHHcCeeEEcccCCcCCccHHHHHHHHcCCCEEecCCC----cccccccc-CccEEEEcC------C
Q 002535 408 VKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLS----NIRKYVDD-RVNGYLFPK------E 476 (911)
Q Consensus 408 V~flG~v~dV~~~L~~ADVfVlPS~~E~qGFplvLLEAMA~G~PVIaTd~g----Gi~EiV~d-g~nGlLv~~------~ 476 (911)
..+.++..+ .++|+.+.+-.+-+.. | -++++||+++|+|+|+-... .....+.+ -+.|+.+.. -
T Consensus 326 g~v~~w~PQ-~~iL~h~~vg~FitH~---G-~nS~~Eai~~GVP~v~~P~~~DQ~~na~~~~~~~g~G~~l~~~~~~~~~ 400 (456)
T PLN02210 326 GVVLEWSPQ-EKILSHMAISCFVTHC---G-WNSTIETVVAGVPVVAYPSWTDQPIDARLLVDVFGIGVRMRNDAVDGEL 400 (456)
T ss_pred eEEEecCCH-HHHhcCcCcCeEEeeC---C-cccHHHHHHcCCCEEecccccccHHHHHHHHHHhCeEEEEeccccCCcC
Confidence 345577644 3578888744443421 3 35888999999999996543 34445544 345776642 3
Q ss_pred CHHHHHHHHHHHHHcCCCcH------HHHHHHHHHHHHHHh-cCHHHHHHHH
Q 002535 477 NIKALTHIILQVITNGKISP------FARNIASIGRRSVKN-LMALETIEGY 521 (911)
Q Consensus 477 D~eaLAeaI~~LLsd~~~p~------~~~~mg~~ar~~ae~-Fs~e~ia~~y 521 (911)
+.++++++|.+++.+ ++ ...++++.+++.+.. =|..+..+.+
T Consensus 401 ~~~~l~~av~~~m~~---~~g~~~r~~a~~l~~~a~~Av~~gGSS~~~l~~~ 449 (456)
T PLN02210 401 KVEEVERCIEAVTEG---PAAADIRRRAAELKHVARLALAPGGSSARNLDLF 449 (456)
T ss_pred CHHHHHHHHHHHhcC---chHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 678999999999977 33 223455555555532 3444444433
No 151
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=91.76 E-value=3 Score=49.38 Aligned_cols=80 Identities=13% Similarity=0.041 Sum_probs=51.1
Q ss_pred cEEEccccccHHHHHHHcCeeEEcccCCcCCccHHHHHHHHcCCCEEecCCC----ccccccccC-ccEEEEc-CCCHHH
Q 002535 407 VVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLS----NIRKYVDDR-VNGYLFP-KENIKA 480 (911)
Q Consensus 407 ~V~flG~v~dV~~~L~~ADVfVlPS~~E~qGFplvLLEAMA~G~PVIaTd~g----Gi~EiV~dg-~nGlLv~-~~D~ea 480 (911)
+....++..+ .+++...++-.+-+. |--++++||+++|+|+|+-... .....+.+. ..|+-+. .-+.++
T Consensus 325 ~g~v~~w~PQ-~~iL~h~~v~~fvtH----~G~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~ 399 (451)
T PLN02410 325 RGYIVKWAPQ-KEVLSHPAVGGFWSH----CGWNSTLESIGEGVPMICKPFSSDQKVNARYLECVWKIGIQVEGDLDRGA 399 (451)
T ss_pred CeEEEccCCH-HHHhCCCccCeeeec----CchhHHHHHHHcCCCEEeccccccCHHHHHHHHHHhCeeEEeCCcccHHH
Confidence 4555566633 336666555333331 2246889999999999986543 344444433 4576653 346889
Q ss_pred HHHHHHHHHHc
Q 002535 481 LTHIILQVITN 491 (911)
Q Consensus 481 LAeaI~~LLsd 491 (911)
++++|.+++.+
T Consensus 400 v~~av~~lm~~ 410 (451)
T PLN02410 400 VERAVKRLMVE 410 (451)
T ss_pred HHHHHHHHHcC
Confidence 99999999987
No 152
>PLN02562 UDP-glycosyltransferase
Probab=91.69 E-value=3.5 Score=48.71 Aligned_cols=86 Identities=15% Similarity=0.052 Sum_probs=57.6
Q ss_pred cEEEccccccHHHHHHHcCeeEEcccCCcCCccHHHHHHHHcCCCEEecCCC----ccccccccC-ccEEEEcCCCHHHH
Q 002535 407 VVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLS----NIRKYVDDR-VNGYLFPKENIKAL 481 (911)
Q Consensus 407 ~V~flG~v~dV~~~L~~ADVfVlPS~~E~qGFplvLLEAMA~G~PVIaTd~g----Gi~EiV~dg-~nGlLv~~~D~eaL 481 (911)
++.+.++. .-..+|...++-.+-++ |--++++||+++|+|+|+-... .....+.+. ..|+-+..-+.+++
T Consensus 329 ~~~v~~w~-PQ~~iL~h~~v~~fvtH----~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~~l 403 (448)
T PLN02562 329 QGKVVSWA-PQLEVLKHQAVGCYLTH----CGWNSTMEAIQCQKRLLCYPVAGDQFVNCAYIVDVWKIGVRISGFGQKEV 403 (448)
T ss_pred CEEEEecC-CHHHHhCCCccceEEec----CcchhHHHHHHcCCCEEeCCcccchHHHHHHHHHHhCceeEeCCCCHHHH
Confidence 56666766 34456766665444442 2357889999999999986543 344555432 44666655688999
Q ss_pred HHHHHHHHHcCCCcHHHHH
Q 002535 482 THIILQVITNGKISPFARN 500 (911)
Q Consensus 482 AeaI~~LLsd~~~p~~~~~ 500 (911)
+++|.+++.+ ++.+++
T Consensus 404 ~~~v~~~l~~---~~~r~~ 419 (448)
T PLN02562 404 EEGLRKVMED---SGMGER 419 (448)
T ss_pred HHHHHHHhCC---HHHHHH
Confidence 9999999988 554443
No 153
>PLN02764 glycosyltransferase family protein
Probab=90.99 E-value=7.2 Score=46.25 Aligned_cols=113 Identities=10% Similarity=0.000 Sum_probs=65.7
Q ss_pred EEEccccccHHHHHHHcCeeEEcccCCcCCccHHHHHHHHcCCCEEecCCCc----ccccccc-CccEEEEcC-----CC
Q 002535 408 VKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSN----IRKYVDD-RVNGYLFPK-----EN 477 (911)
Q Consensus 408 V~flG~v~dV~~~L~~ADVfVlPS~~E~qGFplvLLEAMA~G~PVIaTd~gG----i~EiV~d-g~nGlLv~~-----~D 477 (911)
+...++.. -.++++...+..+-++ |--++++||+++|+|+|+-+..+ ....+.+ -..|+-+.. -+
T Consensus 319 ~v~~~W~P-Q~~vL~h~~v~~FvtH----~G~nS~~Eal~~GVP~l~~P~~~DQ~~na~~l~~~~g~gv~~~~~~~~~~~ 393 (453)
T PLN02764 319 VVWGGWVQ-QPLILSHPSVGCFVSH----CGFGSMWESLLSDCQIVLVPQLGDQVLNTRLLSDELKVSVEVAREETGWFS 393 (453)
T ss_pred cEEeCCCC-HHHHhcCcccCeEEec----CCchHHHHHHHcCCCEEeCCcccchHHHHHHHHHHhceEEEeccccCCccC
Confidence 45556652 2346665544333332 23578999999999999966543 3455533 234655432 27
Q ss_pred HHHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHHHh----cCHHHHHHHHHHHHHHH
Q 002535 478 IKALTHIILQVITNGKIS-PFARNIASIGRRSVKN----LMALETIEGYAMLLENV 528 (911)
Q Consensus 478 ~eaLAeaI~~LLsd~~~p-~~~~~mg~~ar~~ae~----Fs~e~ia~~y~~Lye~v 528 (911)
.+++.++|.+++++ + +..+++.+++++..+. =+..+..+.+.+.+.+.
T Consensus 394 ~e~i~~av~~vm~~---~~~~g~~~r~~a~~~~~~~~~~GSS~~~l~~lv~~~~~~ 446 (453)
T PLN02764 394 KESLRDAINSVMKR---DSEIGNLVKKNHTKWRETLASPGLLTGYVDNFIESLQDL 446 (453)
T ss_pred HHHHHHHHHHHhcC---CchhHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 89999999999987 4 3444555555444322 24444555544444443
No 154
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=90.94 E-value=1.1 Score=53.32 Aligned_cols=80 Identities=18% Similarity=0.155 Sum_probs=52.2
Q ss_pred cEEEccccccHHHHHHHcCeeEEcccCCcCCccHHHHHHHHcCCCEEecCCCc----cccccccCccEEEEcCC--CHHH
Q 002535 407 VVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSN----IRKYVDDRVNGYLFPKE--NIKA 480 (911)
Q Consensus 407 ~V~flG~v~dV~~~L~~ADVfVlPS~~E~qGFplvLLEAMA~G~PVIaTd~gG----i~EiV~dg~nGlLv~~~--D~ea 480 (911)
++....+..+ .++|+...+-++-+. |--+++.||+.+|+|+|+-+.-| ....+.+...|...+.. +.++
T Consensus 324 n~~~~~W~PQ-~~lL~hp~v~~fitH----gG~~s~~Ea~~~gvP~l~~P~~~DQ~~na~~~~~~G~g~~l~~~~~~~~~ 398 (500)
T PF00201_consen 324 NVLIVKWLPQ-NDLLAHPRVKLFITH----GGLNSTQEALYHGVPMLGIPLFGDQPRNAARVEEKGVGVVLDKNDLTEEE 398 (500)
T ss_dssp TEEEESS--H-HHHHTSTTEEEEEES------HHHHHHHHHCT--EEE-GCSTTHHHHHHHHHHTTSEEEEGGGC-SHHH
T ss_pred eEEEeccccc-hhhhhcccceeeeec----cccchhhhhhhccCCccCCCCcccCCccceEEEEEeeEEEEEecCCcHHH
Confidence 6888888744 467765555444442 34789999999999999976543 34444444458887754 4688
Q ss_pred HHHHHHHHHHc
Q 002535 481 LTHIILQVITN 491 (911)
Q Consensus 481 LAeaI~~LLsd 491 (911)
+.++|.++++|
T Consensus 399 l~~ai~~vl~~ 409 (500)
T PF00201_consen 399 LRAAIREVLEN 409 (500)
T ss_dssp HHHHHHHHHHS
T ss_pred HHHHHHHHHhh
Confidence 99999999999
No 155
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=90.56 E-value=5.3 Score=47.68 Aligned_cols=111 Identities=7% Similarity=0.079 Sum_probs=65.1
Q ss_pred cEEEccccccHHHHHHH--cCeeEEcccCCcCCccHHHHHHHHcCCCEEecCCC----cccccccc-CccEEEEcC----
Q 002535 407 VVKHMAAEGDVDSVLNT--ADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLS----NIRKYVDD-RVNGYLFPK---- 475 (911)
Q Consensus 407 ~V~flG~v~dV~~~L~~--ADVfVlPS~~E~qGFplvLLEAMA~G~PVIaTd~g----Gi~EiV~d-g~nGlLv~~---- 475 (911)
.+...++..+ ..+|.. +++||.-. --++++||+++|+|+|+-... .....+.+ -+.|+-+..
T Consensus 344 g~~v~~w~PQ-~~vL~h~~v~~fvtH~------G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~v~~~~gvG~~~~~~~~~ 416 (477)
T PLN02863 344 GLVIRGWAPQ-VAILSHRAVGAFLTHC------GWNSVLEGLVAGVPMLAWPMAADQFVNASLLVDELKVAVRVCEGADT 416 (477)
T ss_pred CEEecCCCCH-HHHhcCCCcCeEEecC------CchHHHHHHHcCCCEEeCCccccchhhHHHHHHhhceeEEeccCCCC
Confidence 4777788744 557765 45555332 356889999999999986543 34444433 245766522
Q ss_pred -CCHHHHHHHHHHHHHcCCCcHHH---HHHHHHHHHHHHh-cCHHHHHHHHHHHHH
Q 002535 476 -ENIKALTHIILQVITNGKISPFA---RNIASIGRRSVKN-LMALETIEGYAMLLE 526 (911)
Q Consensus 476 -~D~eaLAeaI~~LLsd~~~p~~~---~~mg~~ar~~ae~-Fs~e~ia~~y~~Lye 526 (911)
-+.+++++++.+++..+ ++.+ +++++.+++.+.. =+..+..+.+.+.+.
T Consensus 417 ~~~~~~v~~~v~~~m~~~--~~~r~~a~~l~e~a~~Av~~gGSS~~~l~~~v~~i~ 470 (477)
T PLN02863 417 VPDSDELARVFMESVSEN--QVERERAKELRRAALDAIKERGSSVKDLDGFVKHVV 470 (477)
T ss_pred CcCHHHHHHHHHHHhhcc--HHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHH
Confidence 25789999999988431 3322 2455555554432 244444455544443
No 156
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=89.26 E-value=44 Score=37.83 Aligned_cols=101 Identities=17% Similarity=0.127 Sum_probs=62.6
Q ss_pred CCeEEEEEEeccccccccccHHHHHHHHHHhhhhcccCCCCCCCEEEEEEeCCCCCchHHHHHHHHHHcCCCCccEEEcc
Q 002535 333 DDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMA 412 (911)
Q Consensus 333 d~~vIL~VGsrl~~~KGiKg~dlLLeAl~~L~~~~p~~~~~~~~vkLvIVGG~~~e~Y~~~Le~la~~lgL~~~~V~flG 412 (911)
.+.+++..|......|. .-.+...+.+..+.+++ .+++++||+.. .+..+++++ ++.+ .+.+.|
T Consensus 175 ~~~i~i~pg~s~~~~K~-wp~e~~~~l~~~l~~~~---------~~Vvl~g~~~e---~e~~~~i~~--~~~~-~~~l~~ 238 (334)
T COG0859 175 RPYIVINPGASRGSAKR-WPLEHYAELAELLIAKG---------YQVVLFGGPDE---EERAEEIAK--GLPN-AVILAG 238 (334)
T ss_pred CCeEEEeccccccccCC-CCHHHHHHHHHHHHHCC---------CEEEEecChHH---HHHHHHHHH--hcCC-ccccCC
Confidence 34556666623322211 33345566666666654 58999996632 245556666 3333 233666
Q ss_pred cc--ccHHHHHHHcCeeEEcccCCcCCccHHHHHHHHcCCCEEecC
Q 002535 413 AE--GDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPD 456 (911)
Q Consensus 413 ~v--~dV~~~L~~ADVfVlPS~~E~qGFplvLLEAMA~G~PVIaTd 456 (911)
.. .++..+++.||++|.+. +..+-=|-|.|+|+|+-.
T Consensus 239 k~sL~e~~~li~~a~l~I~~D-------Sg~~HlAaA~~~P~I~iy 277 (334)
T COG0859 239 KTSLEELAALIAGADLVIGND-------SGPMHLAAALGTPTIALY 277 (334)
T ss_pred CCCHHHHHHHHhcCCEEEccC-------ChHHHHHHHcCCCEEEEE
Confidence 43 89999999999999775 234556889999999854
No 157
>PLN02173 UDP-glucosyl transferase family protein
Probab=89.05 E-value=7.5 Score=46.06 Aligned_cols=80 Identities=15% Similarity=0.099 Sum_probs=55.5
Q ss_pred cEEEccccccHHHHHHHcCeeEEcccCCcCCccHHHHHHHHcCCCEEecCCC----ccccccccC-ccEEEEcCC-----
Q 002535 407 VVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLS----NIRKYVDDR-VNGYLFPKE----- 476 (911)
Q Consensus 407 ~V~flG~v~dV~~~L~~ADVfVlPS~~E~qGFplvLLEAMA~G~PVIaTd~g----Gi~EiV~dg-~nGlLv~~~----- 476 (911)
++.+.++..+ .++|+...+-.+-++ |=-++++||+++|+|+|+-... ....++.+. ..|+-+..+
T Consensus 318 ~~~i~~W~PQ-~~iL~H~~v~~FvtH----cGwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~v~~~~g~Gv~v~~~~~~~~ 392 (449)
T PLN02173 318 KSLVLKWSPQ-LQVLSNKAIGCFMTH----CGWNSTMEGLSLGVPMVAMPQWTDQPMNAKYIQDVWKVGVRVKAEKESGI 392 (449)
T ss_pred ceEEeCCCCH-HHHhCCCccceEEec----CccchHHHHHHcCCCEEecCchhcchHHHHHHHHHhCceEEEeecccCCc
Confidence 5777788743 357777775555553 2367899999999999996543 344555542 346655321
Q ss_pred -CHHHHHHHHHHHHHc
Q 002535 477 -NIKALTHIILQVITN 491 (911)
Q Consensus 477 -D~eaLAeaI~~LLsd 491 (911)
+.+++++++.+++.+
T Consensus 393 ~~~e~v~~av~~vm~~ 408 (449)
T PLN02173 393 AKREEIEFSIKEVMEG 408 (449)
T ss_pred ccHHHHHHHHHHHhcC
Confidence 679999999999977
No 158
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=89.03 E-value=3.5 Score=46.27 Aligned_cols=113 Identities=13% Similarity=0.198 Sum_probs=67.8
Q ss_pred HHHHHhhCCCC-CCeEEEEEEeccccccccccHHHHHHHHHHhhhhcccCCCCCCCEEEEEEeCCCCCchHHHHHHHHHH
Q 002535 322 DTVRVKMGFKP-DDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILSGDSTSNYSVVIEAIAHN 400 (911)
Q Consensus 322 ~~lR~~lgi~~-d~~vIL~VGsrl~~~KGiKg~dlLLeAl~~L~~~~p~~~~~~~~vkLvIVGG~~~e~Y~~~Le~la~~ 400 (911)
.....++++++ +..+++..|+.....|.| ..+...+.+..|.++ . .+++++||+.+. +..+++.+.
T Consensus 162 ~~~~~~~~~~~~~~~i~i~pga~~~~~K~W-p~e~~~~li~~l~~~--~-------~~ivl~G~~~e~---~~~~~i~~~ 228 (334)
T TIGR02195 162 AAALAKFGLDTERPIIAFCPGAEFGPAKRW-PHEHYAELAKRLIDQ--G-------YQVVLFGSAKDH---PAGNEIEAL 228 (334)
T ss_pred HHHHHHcCCCCCCCEEEEcCCCCCCccCCC-CHHHHHHHHHHHHHC--C-------CEEEEEEChhhH---HHHHHHHHh
Confidence 34455666654 455666666543233333 333445666665543 2 688999976542 333444443
Q ss_pred cCCCCccEEEccc--cccHHHHHHHcCeeEEcccCCcCCccHHHHHHHHcCCCEEecC
Q 002535 401 LHYPLGVVKHMAA--EGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPD 456 (911)
Q Consensus 401 lgL~~~~V~flG~--v~dV~~~L~~ADVfVlPS~~E~qGFplvLLEAMA~G~PVIaTd 456 (911)
.++..+.+.|. ..++..+++.||++|..- +..+-=|-|.|+|+|+--
T Consensus 229 --~~~~~~~l~g~~sL~el~ali~~a~l~I~~D-------SGp~HlAaA~~~P~i~lf 277 (334)
T TIGR02195 229 --LPGELRNLAGETSLDEAVDLIALAKAVVTND-------SGLMHVAAALNRPLVALY 277 (334)
T ss_pred --CCcccccCCCCCCHHHHHHHHHhCCEEEeeC-------CHHHHHHHHcCCCEEEEE
Confidence 22212445664 389999999999999764 234556789999999843
No 159
>PF10933 DUF2827: Protein of unknown function (DUF2827); InterPro: IPR021234 This is a family of uncharacterised proteins found in Burkholderia.
Probab=89.02 E-value=48 Score=38.00 Aligned_cols=326 Identities=13% Similarity=0.134 Sum_probs=175.3
Q ss_pred CCCCChHHHHHHHHHHHHHHCC--CeEEEEEeCCCc---chhhhhhcCceEEEeccchhHHHhhhhcCccEEEEcCcchh
Q 002535 153 DLLIDPQQLQMVTIAIALREIG--YAIQVYSLEDGR---AHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVNSLEAK 227 (911)
Q Consensus 153 ~L~~GGae~~v~~LAk~L~~~G--yeV~V~t~~~g~---~~~~~~~~gi~v~~l~~~~~l~~lI~~~kpDIIhvhs~~~~ 227 (911)
++...|.-.-+.-|+.-|++.. ++|.++..+++. ....+...++++..+ ...+ .+.||++--+....
T Consensus 14 siW~NGi~QN~~fL~~lL~qs~~v~~V~Lvn~g~~~~~~~~~~~~~~~~~~~~~------~~~~--~~lDVlIEmg~ql~ 85 (364)
T PF10933_consen 14 SIWENGINQNCIFLAMLLQQSPRVESVVLVNGGDGNPIPAALMLDLLDVPLVDF------DDAI--DELDVLIEMGAQLD 85 (364)
T ss_pred chhhhchhhHHHHHHHHHhhCCCcceEEEEECCCCCcCCcccccccCCCceecH------HHhc--ccCCEEEEccCccC
Confidence 4456788888899999998876 688888765542 112233444443222 2222 37899987665553
Q ss_pred HHHHHHhhCCCCCCCEEEEEcCchhhHHHHHHHhhcc-hhhHhhHHHHHhhcce-EEecCCc-cccc-cccCCCCCEEEe
Q 002535 228 VVISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQ-LELLNDWKKVFNRATV-VVFPDYV-LPMM-YSAFDAGNYYVI 303 (911)
Q Consensus 228 ~~ia~L~~~~~~giPvV~tiH~~~L~~~l~k~~~~~~-d~lIs~~~~~~~~a~~-vvfpn~~-l~ii-~~~id~~ki~VI 303 (911)
.-....+ +..|.|+|....|+......+....... ..+... ...+. ...|... .... ...+....++++
T Consensus 86 ~~~~~~~--~~~G~KvV~y~~GndYv~~~E~~lF~k~~~~~f~~-----~~yD~VW~lPq~~~~~~~yl~~l~r~Pv~~v 158 (364)
T PF10933_consen 86 PEWLDYM--RARGGKVVSYRCGNDYVMDIESMLFNKPSGHLFNG-----APYDEVWTLPQFENTCAPYLETLHRCPVRVV 158 (364)
T ss_pred HHHHHHH--HHcCCeEEEEeCCchHHHHhhHHhcCCCCCccCCC-----CCCceeEeccchhhhchHHHHHHhcCCceee
Confidence 3444444 2467899988888655444444332211 111000 00011 1112111 0000 011122345555
Q ss_pred CCCCCCcccccccCchh-hHHHH---HhhCCCC--CCeEEEEEEeccccccccccH---HHHHHHHHHhhhhcccCCCCC
Q 002535 304 PGSPAKAWEADTNMDLY-NDTVR---VKMGFKP--DDLVIAIVGTQFMYRGLWLEH---ALILRALLPLFSEVSVENESN 374 (911)
Q Consensus 304 pg~gVD~~~f~~~~~~~-k~~lR---~~lgi~~--d~~vIL~VGsrl~~~KGiKg~---dlLLeAl~~L~~~~p~~~~~~ 374 (911)
|- + | .+.--+. ...+. .++|..+ ....|..+=..+.-- |.. -+++|++- +..|+
T Consensus 159 P~--i--W--sP~F~~~~~~~l~~~~~~FGY~p~~~~~RvavfEPNi~vv---K~~~~PmLi~E~aY---R~~P~----- 221 (364)
T PF10933_consen 159 PH--I--W--SPRFLDQRIAQLPEHGLRFGYQPGRPGKRVAVFEPNISVV---KTCFIPMLICEEAY---RADPD----- 221 (364)
T ss_pred Cc--c--C--CchhHHHHHHhhhhcCCccccccCCCCceEEEecCCceEE---eecCccHHHHHHHH---HhChh-----
Confidence 51 0 1 1100111 11111 1233333 222333332222222 322 23344443 34454
Q ss_pred CCEEEEEEeCCCCCchHHHHHHHHHHcCC-CCccEEEccccccHHHHHHH-cCeeEEcccCCcCCccHHHHHHHHcCCCE
Q 002535 375 SPIKVMILSGDSTSNYSVVIEAIAHNLHY-PLGVVKHMAAEGDVDSVLNT-ADVVIYGSFLEEQTFPEILVKALCFRKPI 452 (911)
Q Consensus 375 ~~vkLvIVGG~~~e~Y~~~Le~la~~lgL-~~~~V~flG~v~dV~~~L~~-ADVfVlPS~~E~qGFplvLLEAMA~G~PV 452 (911)
.+..+.+.....-.-...+..++..+.+ .++...|.|.. +++.++++ .|++|.- .+|. +.-....|||--|=|.
T Consensus 222 -~v~~~~V~Nt~~~ke~~~F~~f~~~ldlvr~gkasfegR~-~~p~fla~~tD~VvSH-qWeN-~lNYlY~daLyggYPL 297 (364)
T PF10933_consen 222 -AVEHVYVTNTYHLKEHPTFVNFANSLDLVRDGKASFEGRF-DFPDFLAQHTDAVVSH-QWEN-PLNYLYYDALYGGYPL 297 (364)
T ss_pred -hcceEEEecchhhhcCHHHHHHHHhhHHhhcCeeEEeeec-ChHHHHHhCCCEEEec-cccc-hhhHHHHHHHhcCCCc
Confidence 2666666621111122666777777776 44477888765 77777775 5666643 5666 6888999999999998
Q ss_pred EecCCCccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhcCHH--HHHHHHHH
Q 002535 453 IAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSVKNLMAL--ETIEGYAM 523 (911)
Q Consensus 453 IaTd~gGi~EiV~dg~nGlLv~~~D~eaLAeaI~~LLsd~~~p~~~~~mg~~ar~~ae~Fs~e--~ia~~y~~ 523 (911)
|-. ..++.+ .|+.++..|..+=++++.+.+.. -+...+...+++++....++.. ..+..|.+
T Consensus 298 VHN-----S~~l~d--~GYYY~~fD~~~G~r~L~~A~~~--HD~~~~~Y~~ra~~~l~~~~p~n~~nv~~y~~ 361 (364)
T PF10933_consen 298 VHN-----SPLLKD--VGYYYPDFDAFEGARQLLRAIRE--HDADLDAYRARARRLLDRLSPENPANVRAYEA 361 (364)
T ss_pred ccC-----cchhcc--cCcCCCCccHHHHHHHHHHHHHH--ccccHHHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence 865 345555 79999999999999999998875 0345567778888888776543 34555544
No 160
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=88.92 E-value=5.9 Score=46.96 Aligned_cols=80 Identities=13% Similarity=0.047 Sum_probs=52.5
Q ss_pred cEEEccccccHHHHHHHcCeeEEcccCCcCCccHHHHHHHHcCCCEEecCCC----ccccccccC-ccEEEEc-----CC
Q 002535 407 VVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLS----NIRKYVDDR-VNGYLFP-----KE 476 (911)
Q Consensus 407 ~V~flG~v~dV~~~L~~ADVfVlPS~~E~qGFplvLLEAMA~G~PVIaTd~g----Gi~EiV~dg-~nGlLv~-----~~ 476 (911)
+..+.++..+ .++|+...+-.+-+. |--++++||+.+|+|+|+-... .....+.+. ..|+-+. .-
T Consensus 328 ~g~v~~W~PQ-~~iL~h~~vg~fvtH----~G~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~ 402 (455)
T PLN02152 328 VGMIVSWCSQ-IEVLRHRAVGCFVTH----CGWSSSLESLVLGVPVVAFPMWSDQPANAKLLEEIWKTGVRVRENSEGLV 402 (455)
T ss_pred CeEEEeeCCH-HHHhCCcccceEEee----CCcccHHHHHHcCCCEEeccccccchHHHHHHHHHhCceEEeecCcCCcC
Confidence 5566677743 347777776555553 2356899999999999986543 333444431 1344442 12
Q ss_pred CHHHHHHHHHHHHHc
Q 002535 477 NIKALTHIILQVITN 491 (911)
Q Consensus 477 D~eaLAeaI~~LLsd 491 (911)
+.++++++|.+++++
T Consensus 403 ~~e~l~~av~~vm~~ 417 (455)
T PLN02152 403 ERGEIRRCLEAVMEE 417 (455)
T ss_pred cHHHHHHHHHHHHhh
Confidence 679999999999976
No 161
>PLN00414 glycosyltransferase family protein
Probab=88.13 E-value=9.1 Score=45.31 Aligned_cols=93 Identities=6% Similarity=-0.010 Sum_probs=58.6
Q ss_pred EEEccccccHHHHHHHcC--eeEEcccCCcCCccHHHHHHHHcCCCEEecCCC----ccccccc-cCccEEEEcC-----
Q 002535 408 VKHMAAEGDVDSVLNTAD--VVIYGSFLEEQTFPEILVKALCFRKPIIAPDLS----NIRKYVD-DRVNGYLFPK----- 475 (911)
Q Consensus 408 V~flG~v~dV~~~L~~AD--VfVlPS~~E~qGFplvLLEAMA~G~PVIaTd~g----Gi~EiV~-dg~nGlLv~~----- 475 (911)
..+.++..+ .++|+... +||.-. =-++++||+++|+|+|+-... ....++. .-..|+.+..
T Consensus 314 ~vv~~w~PQ-~~vL~h~~v~~fvtH~------G~nS~~Ea~~~GvP~l~~P~~~dQ~~na~~~~~~~g~g~~~~~~~~~~ 386 (446)
T PLN00414 314 IVWEGWVEQ-PLILSHPSVGCFVNHC------GFGSMWESLVSDCQIVFIPQLADQVLITRLLTEELEVSVKVQREDSGW 386 (446)
T ss_pred eEEeccCCH-HHHhcCCccceEEecC------chhHHHHHHHcCCCEEecCcccchHHHHHHHHHHhCeEEEeccccCCc
Confidence 444566522 34665554 455322 257899999999999996543 3445553 3345766642
Q ss_pred CCHHHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHHH
Q 002535 476 ENIKALTHIILQVITNGKIS-PFARNIASIGRRSVK 510 (911)
Q Consensus 476 ~D~eaLAeaI~~LLsd~~~p-~~~~~mg~~ar~~ae 510 (911)
-+.+++++++.+++.+ + +..+++.+++++..+
T Consensus 387 ~~~~~i~~~v~~~m~~---~~e~g~~~r~~a~~~~~ 419 (446)
T PLN00414 387 FSKESLRDTVKSVMDK---DSEIGNLVKRNHKKLKE 419 (446)
T ss_pred cCHHHHHHHHHHHhcC---ChhhHHHHHHHHHHHHH
Confidence 3789999999999987 4 344455555555443
No 162
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=87.93 E-value=4 Score=44.52 Aligned_cols=88 Identities=17% Similarity=0.159 Sum_probs=56.0
Q ss_pred cHHHHHHHHHHhhhhcccCCCCCCCEEEEEEeCCCCCchHHHHHHHHHHcCCCCccEEEccccccHHHHHHHcCeeEEcc
Q 002535 352 EHALILRALLPLFSEVSVENESNSPIKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNTADVVIYGS 431 (911)
Q Consensus 352 g~dlLLeAl~~L~~~~p~~~~~~~~vkLvIVGG~~~e~Y~~~Le~la~~lgL~~~~V~flG~v~dV~~~L~~ADVfVlPS 431 (911)
....+++.+..+.+..|+ .+++|==-|........ ..+.+..+..+ +.+.....++.+++..||.++.-+
T Consensus 138 ~~~~~~~~l~~~~~~~p~-------~~lvvK~HP~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~Ll~~s~~Vvtin 207 (269)
T PF05159_consen 138 SQADFLDMLESFAKENPD-------AKLVVKPHPDERGGNKY-SYLEELPNLPN--VVIIDDDVNLYELLEQSDAVVTIN 207 (269)
T ss_pred cHhHHHHHHHHHHHHCCC-------CEEEEEECchhhCCCCh-hHhhhhhcCCC--eEEECCCCCHHHHHHhCCEEEEEC
Confidence 345557777777777666 77766553311000000 11222223343 666655568999999999999665
Q ss_pred cCCcCCccHHHHHHHHcCCCEEecC
Q 002535 432 FLEEQTFPEILVKALCFRKPIIAPD 456 (911)
Q Consensus 432 ~~E~qGFplvLLEAMA~G~PVIaTd 456 (911)
+.+-+|||.+|+|||+..
T Consensus 208 -------StvGlEAll~gkpVi~~G 225 (269)
T PF05159_consen 208 -------STVGLEALLHGKPVIVFG 225 (269)
T ss_pred -------CHHHHHHHHcCCceEEec
Confidence 568899999999999964
No 163
>PLN03007 UDP-glucosyltransferase family protein
Probab=87.89 E-value=13 Score=44.30 Aligned_cols=80 Identities=10% Similarity=0.002 Sum_probs=52.1
Q ss_pred cEEEccccccHHHHHHHcCeeEEcccCCcCCccHHHHHHHHcCCCEEecCCCc----ccccccc-CccEEEE--------
Q 002535 407 VVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSN----IRKYVDD-RVNGYLF-------- 473 (911)
Q Consensus 407 ~V~flG~v~dV~~~L~~ADVfVlPS~~E~qGFplvLLEAMA~G~PVIaTd~gG----i~EiV~d-g~nGlLv-------- 473 (911)
++...++..+ ..+|..+++-.+-+. |--++++||+++|+|+|+-...+ ...++.+ -..|+-+
T Consensus 346 g~~v~~w~PQ-~~iL~h~~v~~fvtH----~G~nS~~Eal~~GVP~v~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~ 420 (482)
T PLN03007 346 GLIIRGWAPQ-VLILDHQATGGFVTH----CGWNSLLEGVAAGLPMVTWPVGAEQFYNEKLVTQVLRTGVSVGAKKLVKV 420 (482)
T ss_pred CEEEecCCCH-HHHhccCccceeeec----CcchHHHHHHHcCCCeeeccchhhhhhhHHHHHHhhcceeEecccccccc
Confidence 5888888744 467887776443342 22568999999999999966543 2332221 1123322
Q ss_pred c--CCCHHHHHHHHHHHHHc
Q 002535 474 P--KENIKALTHIILQVITN 491 (911)
Q Consensus 474 ~--~~D~eaLAeaI~~LLsd 491 (911)
+ .-+.++++++|.+++.+
T Consensus 421 ~~~~~~~~~l~~av~~~m~~ 440 (482)
T PLN03007 421 KGDFISREKVEKAVREVIVG 440 (482)
T ss_pred ccCcccHHHHHHHHHHHhcC
Confidence 1 13689999999999987
No 164
>PF04230 PS_pyruv_trans: Polysaccharide pyruvyl transferase; InterPro: IPR007345 Pyruvyl-transferases are involved in peptidoglycan-associated polymer biosynthesis. CsaB in Bacillus anthracis is necessary for the non-covalent anchoring of proteins containing an SLH (S-layer homology) domain to peptidoglycan-associated pyruvylated polysaccharides. WcaK and AmsJ are involved in the biosynthesis of colanic acid in Escherichia coli and of amylovoran in Erwinia amylovora [, ].
Probab=87.46 E-value=40 Score=35.30 Aligned_cols=36 Identities=25% Similarity=0.309 Sum_probs=30.1
Q ss_pred ccHHHHHHHcCeeEEcccCCcCCccHHHHHHHHcCCCEEecCC
Q 002535 415 GDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDL 457 (911)
Q Consensus 415 ~dV~~~L~~ADVfVlPS~~E~qGFplvLLEAMA~G~PVIaTd~ 457 (911)
.++..+++.+|++|....+ ..+=|+++|+|+|+-+.
T Consensus 249 ~~~~~~~~~~~~~Is~RlH-------~~I~a~~~g~P~i~i~y 284 (286)
T PF04230_consen 249 DELLELISQADLVISMRLH-------GAILALSLGVPVIAISY 284 (286)
T ss_pred HHHHHHHhcCCEEEecCCH-------HHHHHHHcCCCEEEEec
Confidence 7899999999999987754 46679999999998653
No 165
>PLN02167 UDP-glycosyltransferase family protein
Probab=87.27 E-value=11 Score=44.85 Aligned_cols=78 Identities=8% Similarity=-0.051 Sum_probs=49.5
Q ss_pred cEEEccccccHHHHHHHcC--eeEEcccCCcCCccHHHHHHHHcCCCEEecCCCc----cccc-cccCccEEEEcC----
Q 002535 407 VVKHMAAEGDVDSVLNTAD--VVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSN----IRKY-VDDRVNGYLFPK---- 475 (911)
Q Consensus 407 ~V~flG~v~dV~~~L~~AD--VfVlPS~~E~qGFplvLLEAMA~G~PVIaTd~gG----i~Ei-V~dg~nGlLv~~---- 475 (911)
+..+.++. .-..+|+... +||.-. | -++++||+++|+|+|+-...+ .... +..-+.|+.+..
T Consensus 341 rg~v~~w~-PQ~~iL~h~~vg~fvtH~-----G-~nS~~Eal~~GvP~l~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~ 413 (475)
T PLN02167 341 RGLVCGWA-PQVEILAHKAIGGFVSHC-----G-WNSVLESLWFGVPIATWPMYAEQQLNAFTMVKELGLAVELRLDYVS 413 (475)
T ss_pred CeeeeccC-CHHHHhcCcccCeEEeeC-----C-cccHHHHHHcCCCEEeccccccchhhHHHHHHHhCeeEEeeccccc
Confidence 34555766 3344665544 455332 3 458899999999999865432 3322 333345766642
Q ss_pred -----CCHHHHHHHHHHHHHc
Q 002535 476 -----ENIKALTHIILQVITN 491 (911)
Q Consensus 476 -----~D~eaLAeaI~~LLsd 491 (911)
-+.++++++|.+++.+
T Consensus 414 ~~~~~~~~~~l~~av~~~m~~ 434 (475)
T PLN02167 414 AYGEIVKADEIAGAVRSLMDG 434 (475)
T ss_pred ccCCcccHHHHHHHHHHHhcC
Confidence 2688999999999976
No 166
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=86.95 E-value=1 Score=41.60 Aligned_cols=81 Identities=20% Similarity=0.195 Sum_probs=53.8
Q ss_pred EEEEeCCCCCchHHHHHHHHHHcCCCCccEEE---cccc-c--cHHHHHHHcCeeEEcccCCcC-CccHHHHHHHHcCCC
Q 002535 379 VMILSGDSTSNYSVVIEAIAHNLHYPLGVVKH---MAAE-G--DVDSVLNTADVVIYGSFLEEQ-TFPEILVKALCFRKP 451 (911)
Q Consensus 379 LvIVGG~~~e~Y~~~Le~la~~lgL~~~~V~f---lG~v-~--dV~~~L~~ADVfVlPS~~E~q-GFplvLLEAMA~G~P 451 (911)
++||||... +...+++.+++.|.+. +.+ -|.. . .++..+..||++|++..+-.- ..-.+--+|-..|+|
T Consensus 2 vliVGG~~~--~~~~~~~~~~~~G~~~--~~hg~~~~~~~~~~~l~~~i~~aD~VIv~t~~vsH~~~~~vk~~akk~~ip 77 (97)
T PF10087_consen 2 VLIVGGRED--RERRYKRILEKYGGKL--IHHGRDGGDEKKASRLPSKIKKADLVIVFTDYVSHNAMWKVKKAAKKYGIP 77 (97)
T ss_pred EEEEcCCcc--cHHHHHHHHHHcCCEE--EEEecCCCCccchhHHHHhcCCCCEEEEEeCCcChHHHHHHHHHHHHcCCc
Confidence 678998221 2377888899888875 555 2222 3 388999999999998743210 123344566678999
Q ss_pred EEecCCCccccc
Q 002535 452 IIAPDLSNIRKY 463 (911)
Q Consensus 452 VIaTd~gGi~Ei 463 (911)
++.+...|...+
T Consensus 78 ~~~~~~~~~~~l 89 (97)
T PF10087_consen 78 IIYSRSRGVSSL 89 (97)
T ss_pred EEEECCCCHHHH
Confidence 999986665543
No 167
>COG0058 GlgP Glucan phosphorylase [Carbohydrate transport and metabolism]
Probab=86.91 E-value=4.6 Score=50.18 Aligned_cols=140 Identities=13% Similarity=0.091 Sum_probs=88.5
Q ss_pred CCCCCeEEEEEEeccccccccccHHHHHHHHHHhhhhcccCCCCCCCEEEEEEe-CCCCCchHHHHHH----HHHHcCCC
Q 002535 330 FKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILS-GDSTSNYSVVIEA----IAHNLHYP 404 (911)
Q Consensus 330 i~~d~~vIL~VGsrl~~~KGiKg~dlLLeAl~~L~~~~p~~~~~~~~vkLvIVG-G~~~e~Y~~~Le~----la~~lgL~ 404 (911)
++++...++++=+...+ |...+.+.-+..|.....+ +..+.+.+++.| ......+...+.+ .++..+..
T Consensus 483 ~~p~~lfd~~~kRiheY----KRq~Lnl~~i~~ly~~i~~--d~~prv~~iFaGKAhP~y~~aK~iIk~I~~~a~~in~~ 556 (750)
T COG0058 483 VDPNALFDGQARRIHEY----KRQLLNLLDIERLYRILKE--DWVPRVQIIFAGKAHPADYAAKEIIKLINDVADVINNK 556 (750)
T ss_pred cCCCcceeeeehhhhhh----hhhHHhHhhHHHHHHHHhc--CCCCceEEEEeccCCCcchHHHHHHHHHHHHHHhhccc
Confidence 34566667777656667 6665555444444333211 233446667767 2222222233333 33433333
Q ss_pred CccEEEcc-cc-ccHHHHHHHcCeeEEcccCCcCCccHHHHHHHHcCCCEEecCCCccccccc--cCccEEEEcCC
Q 002535 405 LGVVKHMA-AE-GDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSNIRKYVD--DRVNGYLFPKE 476 (911)
Q Consensus 405 ~~~V~flG-~v-~dV~~~L~~ADVfVlPS~~E~qGFplvLLEAMA~G~PVIaTd~gGi~EiV~--dg~nGlLv~~~ 476 (911)
. +|.|+. +. +-...++.+|||-...|+.--+..|..=|-||.-|.+-|+|--|...|+.+ ++.||+++-..
T Consensus 557 l-kVvFl~nYdvslA~~iipa~Dvweqis~a~~EASGTsnMK~alNGaltigtlDGanvEi~e~vg~~N~~~fG~~ 631 (750)
T COG0058 557 L-KVVFLPNYDVSLAELLIPAADVWEQIPTAGKEASGTSNMKAALNGALTLGTLDGANVEIYEHVGGENGWIFGET 631 (750)
T ss_pred c-eEEEeCCCChhHHHhhcccccccccCCCCCccccCcCcchHHhcCCceeeccccHHHHHHHhcCCCceEEeCCc
Confidence 3 577775 44 445668899999988774322257778889999999999999999999996 88999999753
No 168
>PLN02207 UDP-glycosyltransferase
Probab=84.19 E-value=15 Score=43.85 Aligned_cols=111 Identities=15% Similarity=0.076 Sum_probs=60.5
Q ss_pred cEEEccccccHHHHHHHcCeeEEcccCCcCCccHHHHHHHHcCCCEEecCCCc----ccccccc-CccEEEEc-------
Q 002535 407 VVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSN----IRKYVDD-RVNGYLFP------- 474 (911)
Q Consensus 407 ~V~flG~v~dV~~~L~~ADVfVlPS~~E~qGFplvLLEAMA~G~PVIaTd~gG----i~EiV~d-g~nGlLv~------- 474 (911)
+..+.++..+ .++|+...+-.+-++. | -++++||+++|+|+|+-...+ ...++.+ -+.|+-+.
T Consensus 333 ~g~i~~W~PQ-~~IL~H~~vg~FvTH~---G-wnS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvGv~~~~~~~~~~ 407 (468)
T PLN02207 333 RGMICGWSPQ-VEILAHKAVGGFVSHC---G-WNSIVESLWFGVPIVTWPMYAEQQLNAFLMVKELKLAVELKLDYRVHS 407 (468)
T ss_pred CeEEEEeCCH-HHHhcccccceeeecC---c-cccHHHHHHcCCCEEecCccccchhhHHHHHHHhCceEEEeccccccc
Confidence 4555576633 3456655553333321 3 457799999999999965443 3444333 33455331
Q ss_pred --CCCHHHHHHHHHHHHHcCCCcHHHH---HHHHHHHHHHHh-cCHHHHHHHHHH
Q 002535 475 --KENIKALTHIILQVITNGKISPFAR---NIASIGRRSVKN-LMALETIEGYAM 523 (911)
Q Consensus 475 --~~D~eaLAeaI~~LLsd~~~p~~~~---~mg~~ar~~ae~-Fs~e~ia~~y~~ 523 (911)
.-+.+++.++|.+++.+ +.++.++ ++++.+++.++. =+..+..+.+.+
T Consensus 408 ~~~v~~e~i~~av~~vm~~-~~~~~r~~a~~l~~~a~~A~~~GGSS~~~l~~~v~ 461 (468)
T PLN02207 408 DEIVNANEIETAIRCVMNK-DNNVVRKRVMDISQMIQRATKNGGSSFAAIEKFIH 461 (468)
T ss_pred CCcccHHHHHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 12678999999999972 0023222 344444444422 344444444433
No 169
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=83.95 E-value=4.6 Score=42.98 Aligned_cols=105 Identities=16% Similarity=0.175 Sum_probs=58.1
Q ss_pred CCCCeEEEEEEeccccccccccHHHHHHHHHHhhhhcccCCCCCCCEEEEEEeCCCCCchHHHHHHHHHHcCCCCccEEE
Q 002535 331 KPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKH 410 (911)
Q Consensus 331 ~~d~~vIL~VGsrl~~~KGiKg~dlLLeAl~~L~~~~p~~~~~~~~vkLvIVGG~~~e~Y~~~Le~la~~lgL~~~~V~f 410 (911)
.+++.+++..|+.... |.| ..+...+.+..|.+.+ ..++++|++... ..+..+++.+ ++++..+.+
T Consensus 103 ~~~~~i~i~~~a~~~~-k~w-p~e~~~~l~~~l~~~~---------~~vvl~g~~~~~-~~~~~~~~~~--~~~~~~~~~ 168 (247)
T PF01075_consen 103 KDKPYIGINPGASWPS-KRW-PAEKWAELIERLKERG---------YRVVLLGGPEEQ-EKEIADQIAA--GLQNPVINL 168 (247)
T ss_dssp TTSSEEEEE---SSGG-GS---HHHHHHHHHHHCCCT----------EEEE--SSHHH-HHHHHHHHHT--THTTTTEEE
T ss_pred ccCCeEEEeecCCCcc-ccC-CHHHHHHHHHHHHhhC---------ceEEEEccchHH-HHHHHHHHHH--hcccceEee
Confidence 3456677777755533 222 3344566666665543 588888965421 1122333333 333214778
Q ss_pred cccc--ccHHHHHHHcCeeEEcccCCcCCccHHHHHHHHcCCCEEecC
Q 002535 411 MAAE--GDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPD 456 (911)
Q Consensus 411 lG~v--~dV~~~L~~ADVfVlPS~~E~qGFplvLLEAMA~G~PVIaTd 456 (911)
.|.. .++..+++.||++|.+- +..+-=|.|.|+|+|+--
T Consensus 169 ~~~~~l~e~~ali~~a~~~I~~D-------tg~~HlA~a~~~p~v~lf 209 (247)
T PF01075_consen 169 AGKTSLRELAALISRADLVIGND-------TGPMHLAAALGTPTVALF 209 (247)
T ss_dssp TTTS-HHHHHHHHHTSSEEEEES-------SHHHHHHHHTT--EEEEE
T ss_pred cCCCCHHHHHHHHhcCCEEEecC-------ChHHHHHHHHhCCEEEEe
Confidence 7754 88899999999999874 235556889999999853
No 170
>PLN02555 limonoid glucosyltransferase
Probab=83.94 E-value=23 Score=42.35 Aligned_cols=78 Identities=13% Similarity=0.059 Sum_probs=51.3
Q ss_pred cEEEccccccHHHHH--HHcCeeEEcccCCcCCccHHHHHHHHcCCCEEecCCCc----cccccccC-ccEEEEc-----
Q 002535 407 VVKHMAAEGDVDSVL--NTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSN----IRKYVDDR-VNGYLFP----- 474 (911)
Q Consensus 407 ~V~flG~v~dV~~~L--~~ADVfVlPS~~E~qGFplvLLEAMA~G~PVIaTd~gG----i~EiV~dg-~nGlLv~----- 474 (911)
++.+.++..+ ..+| .++.+||.-. | -++++||+.+|+|+|+-...+ ...++.+. ..|+-+.
T Consensus 338 ~g~v~~W~PQ-~~iL~H~~v~~FvtH~-----G-~nS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvGv~l~~~~~~ 410 (480)
T PLN02555 338 KGKIVQWCPQ-EKVLAHPSVACFVTHC-----G-WNSTMEALSSGVPVVCFPQWGDQVTDAVYLVDVFKTGVRLCRGEAE 410 (480)
T ss_pred ceEEEecCCH-HHHhCCCccCeEEecC-----C-cchHHHHHHcCCCEEeCCCccccHHHHHHHHHHhCceEEccCCccc
Confidence 5666677643 4466 4455555332 3 568899999999999966543 34444443 4566652
Q ss_pred C--CCHHHHHHHHHHHHHc
Q 002535 475 K--ENIKALTHIILQVITN 491 (911)
Q Consensus 475 ~--~D~eaLAeaI~~LLsd 491 (911)
. =+.++++++|.+++.+
T Consensus 411 ~~~v~~~~v~~~v~~vm~~ 429 (480)
T PLN02555 411 NKLITREEVAECLLEATVG 429 (480)
T ss_pred cCcCcHHHHHHHHHHHhcC
Confidence 1 1478999999999976
No 171
>PLN00164 glucosyltransferase; Provisional
Probab=83.92 E-value=4.2 Score=48.55 Aligned_cols=79 Identities=10% Similarity=-0.024 Sum_probs=51.3
Q ss_pred EEEccccccHHHHHHHcCeeEEcccCCcCCccHHHHHHHHcCCCEEecCCC----cccccc-ccCccEEEEcC-------
Q 002535 408 VKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLS----NIRKYV-DDRVNGYLFPK------- 475 (911)
Q Consensus 408 V~flG~v~dV~~~L~~ADVfVlPS~~E~qGFplvLLEAMA~G~PVIaTd~g----Gi~EiV-~dg~nGlLv~~------- 475 (911)
+.+.++. .-..+|...++-.+-++. | -++++||+++|+|+|+-..- ....++ +.-..|+-+..
T Consensus 341 ~~v~~w~-PQ~~iL~h~~vg~fvtH~---G-wnS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvG~~~~~~~~~~~~ 415 (480)
T PLN00164 341 LVWPTWA-PQKEILAHAAVGGFVTHC---G-WNSVLESLWHGVPMAPWPLYAEQHLNAFELVADMGVAVAMKVDRKRDNF 415 (480)
T ss_pred eEEeecC-CHHHHhcCcccCeEEeec---c-cchHHHHHHcCCCEEeCCccccchhHHHHHHHHhCeEEEeccccccCCc
Confidence 5555665 334577777754444421 3 45889999999999996543 344444 33245766642
Q ss_pred CCHHHHHHHHHHHHHc
Q 002535 476 ENIKALTHIILQVITN 491 (911)
Q Consensus 476 ~D~eaLAeaI~~LLsd 491 (911)
-+.++++++|.+++.+
T Consensus 416 ~~~e~l~~av~~vm~~ 431 (480)
T PLN00164 416 VEAAELERAVRSLMGG 431 (480)
T ss_pred CcHHHHHHHHHHHhcC
Confidence 2579999999999976
No 172
>PF00343 Phosphorylase: Carbohydrate phosphorylase; InterPro: IPR000811 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 35 GT35 from CAZY comprises enzymes with only one known activity; glycogen and starch phosphorylase (2.4.1.1 from EC). The main role of glycogen phosphorylase (GPase) is to provide phosphorylated glucose molecules (G-1-P) []. GPase is a highly regulated allosteric enzyme. The net effect of the regulatory site allows the enzyme to operate at a variety of rates; the enzyme is not simply regulated as "on" or "off", but rather it can be thought of being set to operate at an ideal rate based on changing conditions at in the cell. The most important allosteric effector is the phosphate molecule covalently attached to Ser14. This switches GPase from the b (inactive) state to the a (active) state. Upon phosphorylation, GPase attains about 80% of its Vmax. When the enzyme is not phosphorylated, GPase activity is practically non-existent at low AMP levels. There is some apparent controversy as to the structure of GPase. All sources agree that the enzyme is multimeric, but there is apparent controversy as to the enzyme being a tetramer or a dimer. Apparently, GPase (in the a form) forms tetramers in the crystal form. The consensus seems to be that `regardless of the a or b form, GPase functions as a dimer in vivo []. The GPase monomer is best described as consisting of two domains, an N-terminal domain and a C-terminal domain []. The C-terminal domain is often referred to as the catalytic domain. It consists of a beta-sheet core surrounded by layers of helical segments []. The vitamin cofactor pyridoxal phosphate (PLP) is covalently attached to the amino acid backbone. The N-terminal domain also consists of a central beta-sheet core and is surrounded by layers of helical segments. The N-terminal domain contains different allosteric effector sites to regulate the enzyme. Bacterial phosphorylases follow the same catalytic mechanisms as their plant and animal counterparts, but differ considerably in terms of their substrate specificity and regulation. The catalytic domains are highly conserved while the regulatory sites are only poorly conserved. For maltodextrin phosphorylase from Escherichia coli the physiological role of the enzyme in the utilisation of maltidextrins is known in detail; that of all the other bacterial phosphorylases is still unclear. Roles in regulatuon of endogenous glycogen metabolism in periods of starvation, and sporulation, stress response or quick adaptation to changing environments are possible [].; GO: 0004645 phosphorylase activity, 0005975 carbohydrate metabolic process; PDB: 1YGP_B 2AW3_B 2AV6_B 1AHP_B 1QM5_A 1L5W_A 2ECP_A 2ASV_A 1L5V_B 1E4O_B ....
Probab=83.89 E-value=27 Score=43.49 Aligned_cols=139 Identities=12% Similarity=0.045 Sum_probs=78.5
Q ss_pred CCCCCeEEEEEEeccccccccccHHH-HHH---HHHHhhhhcccCCCCCCCEEEEEEe-CCCCCchHHHHHHHHHHc---
Q 002535 330 FKPDDLVIAIVGTQFMYRGLWLEHAL-ILR---ALLPLFSEVSVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNL--- 401 (911)
Q Consensus 330 i~~d~~vIL~VGsrl~~~KGiKg~dl-LLe---Al~~L~~~~p~~~~~~~~vkLvIVG-G~~~e~Y~~~Le~la~~l--- 401 (911)
++++...++.+-+...+ |...+ ++. -+.+|++ .|+ .....+.+++.| ..........+.+++.+.
T Consensus 440 ldp~slfdv~~rR~heY----KRq~LniL~ii~~y~rik~-~p~--~~~~Pv~~IFaGKAhP~d~~gK~iIk~I~~va~~ 512 (713)
T PF00343_consen 440 LDPDSLFDVQARRFHEY----KRQLLNILHIIDRYNRIKN-NPN--KKIRPVQFIFAGKAHPGDYMGKEIIKLINNVAEV 512 (713)
T ss_dssp --TTSEEEEEES-SCCC----CTHHHHHHHHHHHHHHHHH-STT--SCCS-EEEEEE----TT-HHHHHHHHHHHHHHHH
T ss_pred CCcchhhhhhhhhcccc----cccCcccccHHHHHHHHHh-ccc--CCCCCeEEEEeccCCCCcHHHHHHHHHHHHHHHH
Confidence 56777777777655566 77766 344 3444443 222 344557888888 322222233333433322
Q ss_pred -----CCCC-ccEEEcc-cc-ccHHHHHHHcCeeEEcccCCcCCccHHHHHHHHcCCCEEecCCCcccccccc--CccEE
Q 002535 402 -----HYPL-GVVKHMA-AE-GDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSNIRKYVDD--RVNGY 471 (911)
Q Consensus 402 -----gL~~-~~V~flG-~v-~dV~~~L~~ADVfVlPS~~E~qGFplvLLEAMA~G~PVIaTd~gGi~EiV~d--g~nGl 471 (911)
.+.+ .+|.|+. |. +-...++.++||-...|+...+..|..=+-||.-|.+.++|--|...|+.+. ..|.+
T Consensus 513 in~Dp~v~~~lkVvFlenYdvslA~~lipg~DVwln~p~~p~EASGTSgMK~~~NGaL~lstlDG~niEi~e~vG~eN~f 592 (713)
T PF00343_consen 513 INNDPEVGDRLKVVFLENYDVSLAEKLIPGVDVWLNIPTRPKEASGTSGMKAAMNGALNLSTLDGWNIEIAEAVGEENIF 592 (713)
T ss_dssp HCT-TTTCCGEEEEEETT-SHHHHHHHGGG-SEEEE---TTSSSS-SHHHHHHHTT-EEEEESSTCHHHHHHHH-GGGSE
T ss_pred HhcChhhccceeEEeecCCcHHHHHHHhhhhhhhhhCCCCCccccCCCcchhhcCCCeEEecccchhHHHHHhcCCCcEE
Confidence 2222 1477775 43 5556789999999987753222578888999999999999999998888753 45788
Q ss_pred EEcC
Q 002535 472 LFPK 475 (911)
Q Consensus 472 Lv~~ 475 (911)
++-.
T Consensus 593 iFG~ 596 (713)
T PF00343_consen 593 IFGL 596 (713)
T ss_dssp EES-
T ss_pred EcCC
Confidence 8854
No 173
>PF15024 Glyco_transf_18: Glycosyltransferase family 18
Probab=83.80 E-value=4.7 Score=48.40 Aligned_cols=98 Identities=13% Similarity=0.178 Sum_probs=71.7
Q ss_pred cccHHHHHHHcCeeEEcc-cCCcCCccHHHHHHHHcCCCEEecCCCcc---------------c---------c-ccccC
Q 002535 414 EGDVDSVLNTADVVIYGS-FLEEQTFPEILVKALCFRKPIIAPDLSNI---------------R---------K-YVDDR 467 (911)
Q Consensus 414 v~dV~~~L~~ADVfVlPS-~~E~qGFplvLLEAMA~G~PVIaTd~gGi---------------~---------E-iV~dg 467 (911)
..++..+|+.+.+||=-. -+| |-+.+||+|.|+|.|-+..... + | .|..
T Consensus 332 ~~ef~~lL~~akvfiGlGfP~E----gPaPlEAia~G~vFlNp~~~pp~s~~n~~ff~~KPt~r~~~SQhPY~e~~iG~- 406 (559)
T PF15024_consen 332 GDEFQQLLRKAKVFIGLGFPYE----GPAPLEAIANGCVFLNPRFNPPHSRLNTEFFKGKPTLREWTSQHPYAEEFIGE- 406 (559)
T ss_pred HHHHHHHHHhhhEeeecCCCCC----CCChHHHHHcCCccccccCCCCCcccccccccCCCCcceeccCChHHHhhCCC-
Confidence 378999999999999443 345 5688999999999887653211 1 1 2221
Q ss_pred ccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHH
Q 002535 468 VNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSV-KNLMALETIEGYAMLLENV 528 (911)
Q Consensus 468 ~nGlLv~~~D~eaLAeaI~~LLsd~~~p~~~~~mg~~ar~~a-e~Fs~e~ia~~y~~Lye~v 528 (911)
-.-+.|+.+|.+++-+||.+++++ +. .-++ -+|+.+.+.++...++++.
T Consensus 407 PhVytVd~~n~~~v~~Avk~il~~---~v---------~Py~P~efT~egmLeRv~~~ie~q 456 (559)
T PF15024_consen 407 PHVYTVDINNSTEVEAAVKAILAT---PV---------EPYLPYEFTCEGMLERVNALIEKQ 456 (559)
T ss_pred CeEEEEcCCCHHHHHHHHHHHHhc---CC---------CCcCCcccCHHHHHHHHHHHHHhh
Confidence 246789999999999999999998 31 1233 5688888888888877764
No 174
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=83.77 E-value=16 Score=41.40 Aligned_cols=104 Identities=14% Similarity=0.172 Sum_probs=63.0
Q ss_pred CCeEEEEEEeccccccccccHHHHHHHHHHhhhhcccCCCCCCCEEEEEEeCCCCCchHHHHHHHHHHcCCCCccEEEcc
Q 002535 333 DDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMA 412 (911)
Q Consensus 333 d~~vIL~VGsrl~~~KGiKg~dlLLeAl~~L~~~~p~~~~~~~~vkLvIVGG~~~e~Y~~~Le~la~~lgL~~~~V~flG 412 (911)
++.+++..|+.. ..|.|. .+...+.+..|.++ . .+++++||+...+. ...+++++...... .+.+.|
T Consensus 183 ~~~i~i~pga~~-~~K~Wp-~e~fa~l~~~L~~~--~-------~~vvl~ggp~e~e~-~~~~~i~~~~~~~~-~~~l~g 249 (352)
T PRK10422 183 QNYVVIQPTARQ-IFKCWD-NDKFSAVIDALQAR--G-------YEVVLTSGPDKDDL-ACVNEIAQGCQTPP-VTALAG 249 (352)
T ss_pred CCeEEEecCCCc-cccCCC-HHHHHHHHHHHHHC--C-------CeEEEEcCCChHHH-HHHHHHHHhcCCCc-cccccC
Confidence 456777777554 334443 34445666666443 2 68889987543111 22344444322222 355667
Q ss_pred cc--ccHHHHHHHcCeeEEcccCCcCCccHHHHHHHHcCCCEEecC
Q 002535 413 AE--GDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPD 456 (911)
Q Consensus 413 ~v--~dV~~~L~~ADVfVlPS~~E~qGFplvLLEAMA~G~PVIaTd 456 (911)
.. .++..+++.||++|..- +..+-=|-|+|+|+|+--
T Consensus 250 ~~sL~el~ali~~a~l~v~nD-------SGp~HlAaA~g~P~v~lf 288 (352)
T PRK10422 250 KTTFPELGALIDHAQLFIGVD-------SAPAHIAAAVNTPLICLF 288 (352)
T ss_pred CCCHHHHHHHHHhCCEEEecC-------CHHHHHHHHcCCCEEEEE
Confidence 43 88999999999999764 234556778999999854
No 175
>PRK14985 maltodextrin phosphorylase; Provisional
Probab=83.51 E-value=8.6 Score=48.23 Aligned_cols=138 Identities=12% Similarity=0.004 Sum_probs=86.4
Q ss_pred CCCCCeEEEEEEeccccccccccHHH-HHHHHHHhhh--hcccCCCCCCCEEEEEEe-CCCCCchHHHHHHHHHHcC---
Q 002535 330 FKPDDLVIAIVGTQFMYRGLWLEHAL-ILRALLPLFS--EVSVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLH--- 402 (911)
Q Consensus 330 i~~d~~vIL~VGsrl~~~KGiKg~dl-LLeAl~~L~~--~~p~~~~~~~~vkLvIVG-G~~~e~Y~~~Le~la~~lg--- 402 (911)
++++...++++=+...+ |...+ ++..+..+.+ +.|+ .......+++.| ..........+.+++....
T Consensus 525 ldp~slfdvq~kR~heY----KRq~Lnil~ii~~y~~i~~~p~--~~~~P~~~IFaGKAaP~y~~aK~iIklI~~va~~i 598 (798)
T PRK14985 525 INPQAIFDVQIKRLHEY----KRQHLNLLHILALYKEIRENPQ--ADRVPRVFLFGAKAAPGYYLAKNIIFAINKVAEVI 598 (798)
T ss_pred cCchhcchhhHhhhhhh----hhhhhHhhhhHHHHHHHHhCCC--cCCCCeEEEEeecCCCCcHHHHHHHHHHHHHHHHh
Confidence 55666666666655566 77766 6555544432 2232 122346777777 3223222333334433222
Q ss_pred -----CCC-ccEEEcc-cc-ccHHHHHHHcCeeEEccc--CCcCCccHHHHHHHHcCCCEEecCCCcccccccc--CccE
Q 002535 403 -----YPL-GVVKHMA-AE-GDVDSVLNTADVVIYGSF--LEEQTFPEILVKALCFRKPIIAPDLSNIRKYVDD--RVNG 470 (911)
Q Consensus 403 -----L~~-~~V~flG-~v-~dV~~~L~~ADVfVlPS~--~E~qGFplvLLEAMA~G~PVIaTd~gGi~EiV~d--g~nG 470 (911)
+.+ .+|.|+. +. +-...++.+||+-..-|. .| ..|..=+-||.-|.+.|+|--|...|+.++ ++||
T Consensus 599 n~Dp~v~~~lkVVFlenY~VslAe~lipaaDvseqis~ag~E--ASGTsnMK~amNGaLtlgtlDGanvEi~e~vG~eN~ 676 (798)
T PRK14985 599 NNDPLVGDKLKVVFLPDYCVSAAELLIPAADISEQISTAGKE--ASGTGNMKLALNGALTVGTLDGANVEIAEQVGEENI 676 (798)
T ss_pred cCChhhCCceeEEEeCCCChHHHHHHhhhhhhhhhCCCCCcc--ccCcchhHHHhcCceeeecccchHHHHHHHhCcCcE
Confidence 010 1466665 43 556778999999998774 45 466677899999999999999998888875 6799
Q ss_pred EEEcC
Q 002535 471 YLFPK 475 (911)
Q Consensus 471 lLv~~ 475 (911)
+++-.
T Consensus 677 f~fG~ 681 (798)
T PRK14985 677 FIFGH 681 (798)
T ss_pred EEeCC
Confidence 99854
No 176
>PLN02554 UDP-glycosyltransferase family protein
Probab=83.20 E-value=14 Score=44.12 Aligned_cols=93 Identities=13% Similarity=0.060 Sum_probs=55.8
Q ss_pred cEEEccccccHHHHH--HHcCeeEEcccCCcCCccHHHHHHHHcCCCEEecCCCc----cc-cccccCccEEEEcC----
Q 002535 407 VVKHMAAEGDVDSVL--NTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSN----IR-KYVDDRVNGYLFPK---- 475 (911)
Q Consensus 407 ~V~flG~v~dV~~~L--~~ADVfVlPS~~E~qGFplvLLEAMA~G~PVIaTd~gG----i~-EiV~dg~nGlLv~~---- 475 (911)
++.+.++.. -..+| .++.+||.- |--++++||+.+|+|+|+-...+ .. .+++.-..|..++.
T Consensus 343 ~g~v~~W~P-Q~~iL~H~~v~~FvtH------~G~nS~~Ea~~~GVP~l~~P~~~DQ~~Na~~~v~~~g~Gv~l~~~~~~ 415 (481)
T PLN02554 343 IGKVIGWAP-QVAVLAKPAIGGFVTH------CGWNSILESLWFGVPMAAWPLYAEQKFNAFEMVEELGLAVEIRKYWRG 415 (481)
T ss_pred CceEEeeCC-HHHHhCCcccCccccc------CccchHHHHHHcCCCEEecCccccchhhHHHHHHHhCceEEeeccccc
Confidence 455567663 33466 344445522 22568899999999999966442 33 23433334666531
Q ss_pred ---------CCHHHHHHHHHHHHH-cCCCcHHHH---HHHHHHHHHH
Q 002535 476 ---------ENIKALTHIILQVIT-NGKISPFAR---NIASIGRRSV 509 (911)
Q Consensus 476 ---------~D~eaLAeaI~~LLs-d~~~p~~~~---~mg~~ar~~a 509 (911)
-+.++++++|.+++. + +..++ ++++.+++.+
T Consensus 416 ~~~~~~~~~~~~e~l~~av~~vm~~~---~~~r~~a~~l~~~~~~av 459 (481)
T PLN02554 416 DLLAGEMETVTAEEIERGIRCLMEQD---SDVRKRVKEMSEKCHVAL 459 (481)
T ss_pred cccccccCeEcHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHHh
Confidence 268899999999997 4 33333 3455444444
No 177
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=82.78 E-value=8.3 Score=43.65 Aligned_cols=113 Identities=11% Similarity=0.120 Sum_probs=65.3
Q ss_pred HHHhhCCC-CCCeEEEEEEeccccccccccHHHHHHHHHHhhhhcccCCCCCCCEEEEEEeCCCCCchHHHHHHHHHHcC
Q 002535 324 VRVKMGFK-PDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILSGDSTSNYSVVIEAIAHNLH 402 (911)
Q Consensus 324 lR~~lgi~-~d~~vIL~VGsrl~~~KGiKg~dlLLeAl~~L~~~~p~~~~~~~~vkLvIVGG~~~e~Y~~~Le~la~~lg 402 (911)
....++.. ++..+++..|+.....|.|. .+...+.+..|.+. . ++++++||+.+. +..+++++...
T Consensus 170 ~~~~~~~~~~~~~i~i~pga~~~~~K~Wp-~e~~a~l~~~l~~~--~-------~~vvl~Gg~~e~---~~~~~i~~~~~ 236 (348)
T PRK10916 170 TCAAFSLSSERPIIGFCPGAEFGPAKRWP-HYHYAELAQQLIDE--G-------YQVVLFGSAKDH---EAGNEILAALN 236 (348)
T ss_pred HHHHcCCCCCCCEEEEeCCCCCccccCCC-HHHHHHHHHHHHHC--C-------CeEEEEeCHHhH---HHHHHHHHhcc
Confidence 34444543 34556667775432333332 33345555555432 2 688999976542 33344444332
Q ss_pred CC--CccEEEccc--cccHHHHHHHcCeeEEcccCCcCCccHHHHHHHHcCCCEEecC
Q 002535 403 YP--LGVVKHMAA--EGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPD 456 (911)
Q Consensus 403 L~--~~~V~flG~--v~dV~~~L~~ADVfVlPS~~E~qGFplvLLEAMA~G~PVIaTd 456 (911)
-. ...+.+.|. ..++..+++.||++|..- +..+-=|-|.|+|+|+--
T Consensus 237 ~~~~~~~~~l~g~~sL~el~ali~~a~l~I~nD-------TGp~HlAaA~g~P~valf 287 (348)
T PRK10916 237 TEQQAWCRNLAGETQLEQAVILIAACKAIVTND-------SGLMHVAAALNRPLVALY 287 (348)
T ss_pred cccccceeeccCCCCHHHHHHHHHhCCEEEecC-------ChHHHHHHHhCCCEEEEE
Confidence 11 102455564 388999999999999764 235556889999999843
No 178
>PRK14986 glycogen phosphorylase; Provisional
Probab=82.35 E-value=6.6 Score=49.33 Aligned_cols=146 Identities=11% Similarity=0.028 Sum_probs=91.5
Q ss_pred CCCCCeEEEEEEeccccccccccHHH-HHHHHHHhhh--hcccCCCCCCCEEEEEEe-CCCCCchHHHHHHHHHHcC---
Q 002535 330 FKPDDLVIAIVGTQFMYRGLWLEHAL-ILRALLPLFS--EVSVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLH--- 402 (911)
Q Consensus 330 i~~d~~vIL~VGsrl~~~KGiKg~dl-LLeAl~~L~~--~~p~~~~~~~~vkLvIVG-G~~~e~Y~~~Le~la~~lg--- 402 (911)
++++...++++=+...+ |...+ ++..+..+.+ ..|+ .......+++.| ..........+.+++....
T Consensus 539 ldp~sLfd~qakR~heY----KRq~LNil~~i~ry~~i~~~p~--~~~~P~~~IFaGKAaP~y~~aK~iIk~I~~va~~i 612 (815)
T PRK14986 539 VNPKALFDVQIKRIHEY----KRQLMNVLHVITRYNRIKADPD--AKWVPRVNIFAGKAASAYYMAKHIIHLINDVAKVI 612 (815)
T ss_pred cCcccceeeeehhhhhh----hhhhHHHhhhHHHHHHHHhCCC--cCCCCeEEEEeecCCCCcHHHHHHHHHHHHHHHHh
Confidence 55666666666655556 88877 6666554432 2232 222447888877 3222222233333332211
Q ss_pred -----CCC-ccEEEcc-cc-ccHHHHHHHcCeeEEccc--CCcCCccHHHHHHHHcCCCEEecCCCcccccccc--CccE
Q 002535 403 -----YPL-GVVKHMA-AE-GDVDSVLNTADVVIYGSF--LEEQTFPEILVKALCFRKPIIAPDLSNIRKYVDD--RVNG 470 (911)
Q Consensus 403 -----L~~-~~V~flG-~v-~dV~~~L~~ADVfVlPS~--~E~qGFplvLLEAMA~G~PVIaTd~gGi~EiV~d--g~nG 470 (911)
+.+ -+|.|+. +. +-...++.+||+-..-|. .| ..|..=+-||.-|.+.++|--|...|+.++ ++||
T Consensus 613 n~Dp~v~~~lkVVFlenY~vslAe~lipg~Dv~eqis~ag~E--ASGTsnMK~alNGaLtlgtlDG~nvEi~e~vG~eN~ 690 (815)
T PRK14986 613 NNDPQIGDKLKVVFIPNYSVSLAQLIIPAADLSEQISLAGTE--ASGTSNMKFALNGALTIGTLDGANVEMLEHVGEENI 690 (815)
T ss_pred ccChhhcCceeEEEeCCCCHHHHHHhhhhhhhhhhCCCCCcc--ccCcchhhHHhcCceeeeccCCchhHHHHhcCCCcE
Confidence 111 1466665 43 555678999999998774 45 467777899999999999999999999876 7899
Q ss_pred EEEcCCCHHHHHHH
Q 002535 471 YLFPKENIKALTHI 484 (911)
Q Consensus 471 lLv~~~D~eaLAea 484 (911)
+++-. +.++..+.
T Consensus 691 ~~fG~-~~~ev~~~ 703 (815)
T PRK14986 691 FIFGN-TAEEVEAL 703 (815)
T ss_pred EEeCC-CHHHHHHH
Confidence 99964 55555543
No 179
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=80.89 E-value=94 Score=34.22 Aligned_cols=85 Identities=21% Similarity=0.169 Sum_probs=52.4
Q ss_pred HHHHHHHHHHhhhhcccCCCCCCCEEEEEEe-C-CCCCchHHHHHHHHHHcCCCCccEEEccccccHHHHHHHcCeeEEc
Q 002535 353 HALILRALLPLFSEVSVENESNSPIKVMILS-G-DSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNTADVVIYG 430 (911)
Q Consensus 353 ~dlLLeAl~~L~~~~p~~~~~~~~vkLvIVG-G-~~~e~Y~~~Le~la~~lgL~~~~V~flG~v~dV~~~L~~ADVfVlP 430 (911)
.+.+.+++..+.++.. .+++++. . +.. ....+++...+.-.. .+......+++..++++||++|..
T Consensus 190 ~~~l~~~l~~l~~~~g--------~~v~~i~~~~~~D---~~~~~~l~~~~~~~~-~i~~~~~~~e~~~~i~~~~~vI~~ 257 (298)
T TIGR03609 190 LLRLLRALDRLQRDTG--------AFVLFLPFQQPQD---LPLARALRDQLLGPA-EVLSPLDPEELLGLFASARLVIGM 257 (298)
T ss_pred HHHHHHHHHHHHHhhC--------CeEEEEeCCcchh---HHHHHHHHHhcCCCc-EEEecCCHHHHHHHHhhCCEEEEe
Confidence 4556777777766532 4565555 2 222 244555555443333 343222337888899999987766
Q ss_pred ccCCcCCccHHHHHHHHcCCCEEecC
Q 002535 431 SFLEEQTFPEILVKALCFRKPIIAPD 456 (911)
Q Consensus 431 S~~E~qGFplvLLEAMA~G~PVIaTd 456 (911)
..+ .++=|+++|+|+|+-.
T Consensus 258 RlH-------~~I~A~~~gvP~i~i~ 276 (298)
T TIGR03609 258 RLH-------ALILAAAAGVPFVALS 276 (298)
T ss_pred chH-------HHHHHHHcCCCEEEee
Confidence 543 5678999999999754
No 180
>cd04300 GT1_Glycogen_Phosphorylase This is a family of oligosaccharide phosphorylases. It includes yeast and mammalian glycogen phosphorylases, plant starch/glucan phosphorylase, as well as the maltodextrin phosphorylases of bacteria. The members of this family catalyze the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The allosteric control mechanisms of yeast and mammalian members of this family are different from that of bacterial members. The members of this family belong to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=80.33 E-value=9.8 Score=47.85 Aligned_cols=144 Identities=13% Similarity=0.039 Sum_probs=90.9
Q ss_pred CCCCCeEEEEEEeccccccccccHHH-HHHHHH---HhhhhcccCCCCCCCEEEEEEe-CCCCCchHHHHHHHHHHcC--
Q 002535 330 FKPDDLVIAIVGTQFMYRGLWLEHAL-ILRALL---PLFSEVSVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLH-- 402 (911)
Q Consensus 330 i~~d~~vIL~VGsrl~~~KGiKg~dl-LLeAl~---~L~~~~p~~~~~~~~vkLvIVG-G~~~e~Y~~~Le~la~~lg-- 402 (911)
++++...++.+=+...+ |...+ ++..+. +|++ .|+ .......+++.| ..........+.+++....
T Consensus 526 ldp~slfdvq~KR~heY----KRq~LNil~ii~~y~~i~~-~p~--~~~~P~~~IFaGKAaP~y~~aK~iIklI~~va~~ 598 (797)
T cd04300 526 VDPDSLFDVQVKRIHEY----KRQLLNVLHIIHLYNRIKE-NPN--ADIVPRTFIFGGKAAPGYYMAKLIIKLINAVADV 598 (797)
T ss_pred cCCCccEEEEeeechhh----hhhhhHHHhhHHHHHHHHh-CCC--cCCCCeEEEEeccCCCCcHHHHHHHHHHHHHHHH
Confidence 56777777777766667 77777 555544 4443 232 122346777777 3222222333333333221
Q ss_pred ------CCC-ccEEEcc-cc-ccHHHHHHHcCeeEEccc--CCcCCccHHHHHHHHcCCCEEecCCCcccccccc--Ccc
Q 002535 403 ------YPL-GVVKHMA-AE-GDVDSVLNTADVVIYGSF--LEEQTFPEILVKALCFRKPIIAPDLSNIRKYVDD--RVN 469 (911)
Q Consensus 403 ------L~~-~~V~flG-~v-~dV~~~L~~ADVfVlPS~--~E~qGFplvLLEAMA~G~PVIaTd~gGi~EiV~d--g~n 469 (911)
+.+ -+|.|+. +. +-...++.+||+-..-|. .| ..|..=+-+|.-|.+.|+|--|...|+.++ ++|
T Consensus 599 in~Dp~v~~~lkVVFlenY~VslAe~iipaaDvseqis~ag~E--ASGTsnMK~~lNGaltlgtlDGanvEi~e~vG~eN 676 (797)
T cd04300 599 VNNDPDVGDKLKVVFLPNYNVSLAEKIIPAADLSEQISTAGKE--ASGTGNMKFMLNGALTIGTLDGANVEIAEEVGEEN 676 (797)
T ss_pred hccChhcCCceEEEEeCCCChHHHHHhhhhhhhhhhCCCCCcc--ccCCchhhHHhcCceeeecccchhHHHHHHhCcCc
Confidence 111 0466665 43 556778999999988774 45 466677899999999999999999998876 789
Q ss_pred EEEEcCCCHHHHHH
Q 002535 470 GYLFPKENIKALTH 483 (911)
Q Consensus 470 GlLv~~~D~eaLAe 483 (911)
+++|-. +.++..+
T Consensus 677 ~fiFG~-~~~ev~~ 689 (797)
T cd04300 677 IFIFGL-TAEEVEA 689 (797)
T ss_pred EEEeCC-CHHHHHH
Confidence 999964 4555443
No 181
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=78.31 E-value=11 Score=45.08 Aligned_cols=80 Identities=10% Similarity=-0.058 Sum_probs=54.2
Q ss_pred cEEEccccccHHHHHHHcCeeEEcccCCcCCccHHHHHHHHcCCCEEecCCCc----ccccc-ccCccEEEEcC----CC
Q 002535 407 VVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSN----IRKYV-DDRVNGYLFPK----EN 477 (911)
Q Consensus 407 ~V~flG~v~dV~~~L~~ADVfVlPS~~E~qGFplvLLEAMA~G~PVIaTd~gG----i~EiV-~dg~nGlLv~~----~D 477 (911)
.+.+.++.. -.+++....+-.+-+. |=-++++||+.+|+|+|+-...+ ....+ +.-..|+-++. -+
T Consensus 339 g~vv~~W~P-Q~~iL~h~~vg~FitH----~G~nS~~Eal~~GVP~l~~P~~~DQ~~na~~~~~~~g~gv~~~~~~~~~~ 413 (481)
T PLN02992 339 GFVVPSWAP-QAEILAHQAVGGFLTH----CGWSSTLESVVGGVPMIAWPLFAEQNMNAALLSDELGIAVRSDDPKEVIS 413 (481)
T ss_pred CEEEeecCC-HHHHhCCcccCeeEec----CchhHHHHHHHcCCCEEecCccchhHHHHHHHHHHhCeeEEecCCCCccc
Confidence 477777763 3346777666443342 23568999999999999976543 34444 23345766643 36
Q ss_pred HHHHHHHHHHHHHc
Q 002535 478 IKALTHIILQVITN 491 (911)
Q Consensus 478 ~eaLAeaI~~LLsd 491 (911)
.++++++|.+++.+
T Consensus 414 ~~~l~~av~~vm~~ 427 (481)
T PLN02992 414 RSKIEALVRKVMVE 427 (481)
T ss_pred HHHHHHHHHHHhcC
Confidence 78999999999976
No 182
>TIGR02093 P_ylase glycogen/starch/alpha-glucan phosphorylases. This family consists of phosphorylases. Members use phosphate to break alpha 1,4 linkages between pairs of glucose residues at the end of long glucose polymers, releasing alpha-D-glucose 1-phosphate. The nomenclature convention is to preface the name according to the natural substrate, as in glycogen phosphorylase, starch phosphorylase, maltodextrin phosphorylase, etc. Name differences among these substrates reflect differences in patterns of branching with alpha 1,6 linkages. Members include allosterically regulated and unregulated forms. A related family, TIGR02094, contains examples known to act well on particularly small alpha 1,4 glucans, as may be found after import from exogenous sources.
Probab=77.98 E-value=9.4 Score=47.92 Aligned_cols=146 Identities=12% Similarity=0.054 Sum_probs=92.3
Q ss_pred CCCCCeEEEEEEeccccccccccHHH-HHHHHHHhhh--hcccCCCCCCCEEEEEEe-CCCCCchHHHHHHHHHHcC---
Q 002535 330 FKPDDLVIAIVGTQFMYRGLWLEHAL-ILRALLPLFS--EVSVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLH--- 402 (911)
Q Consensus 330 i~~d~~vIL~VGsrl~~~KGiKg~dl-LLeAl~~L~~--~~p~~~~~~~~vkLvIVG-G~~~e~Y~~~Le~la~~lg--- 402 (911)
++++...++.+=+...+ |...+ ++..+..+.+ ..|+ .......+++.| ..........+.+++....
T Consensus 523 ldp~slfdvq~KR~heY----KRq~LNil~ii~~y~~i~~~p~--~~~~P~~~IFaGKAaP~y~~aK~iIklI~~va~~i 596 (794)
T TIGR02093 523 VDPNSIFDVQVKRLHEY----KRQLLNVLHVIYLYNRIKEDPP--KDIVPRTVIFGGKAAPGYHMAKLIIKLINSVAEVV 596 (794)
T ss_pred cCccccchhhheechhh----hHHHHHHhhhHHHHHHHHhCCC--cCCCCeEEEEEecCCCCcHHHHHHHHHHHHHHHHh
Confidence 45666666667655566 77777 5555544432 2232 112346777777 3323233344444444322
Q ss_pred -----CCC-ccEEEcc-cc-ccHHHHHHHcCeeEEccc--CCcCCccHHHHHHHHcCCCEEecCCCcccccccc--CccE
Q 002535 403 -----YPL-GVVKHMA-AE-GDVDSVLNTADVVIYGSF--LEEQTFPEILVKALCFRKPIIAPDLSNIRKYVDD--RVNG 470 (911)
Q Consensus 403 -----L~~-~~V~flG-~v-~dV~~~L~~ADVfVlPS~--~E~qGFplvLLEAMA~G~PVIaTd~gGi~EiV~d--g~nG 470 (911)
+.+ -+|.|+. +. +-...++.+||+-..-|. .| ..|..=+-+|.-|.+.|+|--|...|+.++ ++|+
T Consensus 597 N~Dp~v~~~lkVVFlenY~VslAe~iipaaDvseqistag~E--ASGTsnMK~alNGaltlgtlDGanvEi~e~vG~eN~ 674 (794)
T TIGR02093 597 NNDPAVGDKLKVVFVPNYNVSLAELIIPAADLSEQISTAGKE--ASGTGNMKFMLNGALTIGTLDGANVEIREEVGAENI 674 (794)
T ss_pred ccChhhCCceeEEEeCCCChHHHHHhhhhhhhhhhCCCCCcc--ccCcchhHHHhcCcceeecccchhHHHHHHhCcccE
Confidence 211 1466665 43 556778999999988774 45 466677899999999999999999998876 7899
Q ss_pred EEEcCCCHHHHHHH
Q 002535 471 YLFPKENIKALTHI 484 (911)
Q Consensus 471 lLv~~~D~eaLAea 484 (911)
++|-. +.++..+.
T Consensus 675 fiFG~-~~~ev~~~ 687 (794)
T TIGR02093 675 FIFGL-TVEEVEAL 687 (794)
T ss_pred EEcCC-CHHHHHHH
Confidence 99964 55555543
No 183
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=76.80 E-value=22 Score=39.57 Aligned_cols=100 Identities=17% Similarity=0.181 Sum_probs=60.1
Q ss_pred CCCeEEEEEEeccccccccccHHHHHHHHHHhhhhcccCCCCCCCEEEEEEe-CCCCCchHHHHHHHHHHcCCCCccEEE
Q 002535 332 PDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKH 410 (911)
Q Consensus 332 ~d~~vIL~VGsrl~~~KGiKg~dlLLeAl~~L~~~~p~~~~~~~~vkLvIVG-G~~~e~Y~~~Le~la~~lgL~~~~V~f 410 (911)
+++.+++..|+.. ..|-| -.+...+.+..|.++ . .+++++| ++.+ .+..+++.+ .+++ ..+
T Consensus 178 ~~~~i~i~~gas~-~~K~w-p~e~~~~l~~~l~~~--~-------~~~vl~~g~~~e---~~~~~~i~~--~~~~--~~l 239 (319)
T TIGR02193 178 PAPYAVLLHATSR-DDKTW-PEERWRELARLLLAR--G-------LQIVLPWGNDAE---KQRAERIAE--ALPG--AVV 239 (319)
T ss_pred CCCEEEEEeCCCc-ccCCC-CHHHHHHHHHHHHHC--C-------CeEEEeCCCHHH---HHHHHHHHh--hCCC--Cee
Confidence 3455667777544 33333 334556666666543 2 6777775 4332 133444544 2333 345
Q ss_pred ccc--cccHHHHHHHcCeeEEcccCCcCCccHHHHHHHHcCCCEEecC
Q 002535 411 MAA--EGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPD 456 (911)
Q Consensus 411 lG~--v~dV~~~L~~ADVfVlPS~~E~qGFplvLLEAMA~G~PVIaTd 456 (911)
.|. ..++..+++.||++|.+- +..+-=|-|.|+|+|+--
T Consensus 240 ~g~~sL~el~ali~~a~l~I~~D-------Sgp~HlAaa~g~P~i~lf 280 (319)
T TIGR02193 240 LPKMSLAEVAALLAGADAVVGVD-------TGLTHLAAALDKPTVTLY 280 (319)
T ss_pred cCCCCHHHHHHHHHcCCEEEeCC-------ChHHHHHHHcCCCEEEEE
Confidence 563 378999999999999764 234556778899999854
No 184
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=73.49 E-value=22 Score=40.10 Aligned_cols=104 Identities=13% Similarity=0.227 Sum_probs=63.0
Q ss_pred CCeEEEEEEeccccccccccHHHHHHHHHHhhhhcccCCCCCCCEEEEEEeCCCCCchHHHHHHHHHHcCCCCccEEEcc
Q 002535 333 DDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMA 412 (911)
Q Consensus 333 d~~vIL~VGsrl~~~KGiKg~dlLLeAl~~L~~~~p~~~~~~~~vkLvIVGG~~~e~Y~~~Le~la~~lgL~~~~V~flG 412 (911)
++.+++..|+.. ..|.| ..+...+.+..|.++ . .+++++||+...+ .+..+++.+..+-.. .+.+.|
T Consensus 181 ~~~i~i~p~a~~-~~K~W-p~e~~~~l~~~l~~~--~-------~~ivl~g~p~~~e-~~~~~~i~~~~~~~~-~~~l~g 247 (344)
T TIGR02201 181 QNYIVIQPTSRW-FFKCW-DNDRFSALIDALHAR--G-------YEVVLTSGPDKDE-LAMVNEIAQGCQTPR-VTSLAG 247 (344)
T ss_pred CCEEEEeCCCCc-cccCC-CHHHHHHHHHHHHhC--C-------CeEEEecCCCHHH-HHHHHHHHhhCCCCc-ccccCC
Confidence 455666667544 33333 344556666666543 2 6889999754211 022344444333222 344667
Q ss_pred cc--ccHHHHHHHcCeeEEcccCCcCCccHHHHHHHHcCCCEEecC
Q 002535 413 AE--GDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPD 456 (911)
Q Consensus 413 ~v--~dV~~~L~~ADVfVlPS~~E~qGFplvLLEAMA~G~PVIaTd 456 (911)
.. .++..+++.||++|..- +..+-=|-|.|+|+|+--
T Consensus 248 ~~sL~el~ali~~a~l~Vs~D-------SGp~HlAaA~g~p~v~Lf 286 (344)
T TIGR02201 248 KLTLPQLAALIDHARLFIGVD-------SVPMHMAAALGTPLVALF 286 (344)
T ss_pred CCCHHHHHHHHHhCCEEEecC-------CHHHHHHHHcCCCEEEEE
Confidence 43 89999999999999763 345566889999999854
No 185
>PF03016 Exostosin: Exostosin family; InterPro: IPR004263 Hereditary multiple exostoses (EXT) is an autosomal dominant disorder that is characterised by the appearance of multiple outgrowths of the long bones (exostoses) at their epiphyses []. Mutations in two homologous genes, EXT1 and EXT2, are responsible for the EXT syndrome. The human and mouse EXT genes have at least two homologs in the invertebrate Caenorhabditis elegans, indicating that they do not function exclusively as regulators of bone growth. EXT1 and EXT2 have both been shown to encode glycosyltransferases involved in the chain elongation step of heparan sulphate biosynthesis [].; GO: 0016020 membrane
Probab=72.28 E-value=3.7 Score=45.07 Aligned_cols=70 Identities=16% Similarity=0.162 Sum_probs=51.8
Q ss_pred ccHHHHHHHcCeeEEcccCCcCCccHHHHHHHHcCC-CEEecCCC--ccccccccCccEEEEcCCCHHHHHHHHH
Q 002535 415 GDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRK-PIIAPDLS--NIRKYVDDRVNGYLFPKENIKALTHIIL 486 (911)
Q Consensus 415 ~dV~~~L~~ADVfVlPS~~E~qGFplvLLEAMA~G~-PVIaTd~g--Gi~EiV~dg~nGlLv~~~D~eaLAeaI~ 486 (911)
.+..+.|+.|..++.|.-.. .+..-+.|||++|+ |||.++.- ...++++=..-.+.++..+..+|.+.+.
T Consensus 228 ~~~~~~l~~S~FCL~p~G~~--~~s~Rl~eal~~GcIPVii~d~~~lPf~~~ldw~~fsv~v~~~~~~~l~~iL~ 300 (302)
T PF03016_consen 228 SEYMELLRNSKFCLCPRGDG--PWSRRLYEALAAGCIPVIISDDYVLPFEDVLDWSRFSVRVPEADLPELPEILR 300 (302)
T ss_pred hHHHHhcccCeEEEECCCCC--cccchHHHHhhhceeeEEecCcccCCcccccCHHHEEEEECHHHHHHHHHHHh
Confidence 35778999999999987443 26889999999999 89987643 2346776566778888766766665554
No 186
>PLN02534 UDP-glycosyltransferase
Probab=70.78 E-value=1.7e+02 Score=35.26 Aligned_cols=79 Identities=9% Similarity=-0.020 Sum_probs=50.7
Q ss_pred cEEEccccccHHHHHHHcCeeEEcccCCcCCccHHHHHHHHcCCCEEecCCCc----cccccc-cCccEEEEc-------
Q 002535 407 VVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSN----IRKYVD-DRVNGYLFP------- 474 (911)
Q Consensus 407 ~V~flG~v~dV~~~L~~ADVfVlPS~~E~qGFplvLLEAMA~G~PVIaTd~gG----i~EiV~-dg~nGlLv~------- 474 (911)
.+.+.|+..+ ..++...++-.+-+. |-.++++||+++|+|+|+-...+ ....+. .-+.|+-+.
T Consensus 345 g~~v~~w~pq-~~iL~h~~v~~fvtH----~G~ns~~ea~~~GvP~v~~P~~~dq~~na~~~~e~~~vGv~~~~~~~~~~ 419 (491)
T PLN02534 345 GLLIKGWAPQ-VLILSHPAIGGFLTH----CGWNSTIEGICSGVPMITWPLFAEQFLNEKLIVEVLRIGVRVGVEVPVRW 419 (491)
T ss_pred CeeccCCCCH-HHHhcCCccceEEec----CccHHHHHHHHcCCCEEeccccccHHHHHHHHHHhhcceEEecccccccc
Confidence 5777787754 557777777444442 23678999999999999976543 222222 112233221
Q ss_pred --------CCCHHHHHHHHHHHHH
Q 002535 475 --------KENIKALTHIILQVIT 490 (911)
Q Consensus 475 --------~~D~eaLAeaI~~LLs 490 (911)
.-+.++++++|.+++.
T Consensus 420 ~~~~~~~~~v~~eev~~~v~~~m~ 443 (491)
T PLN02534 420 GDEERVGVLVKKDEVEKAVKTLMD 443 (491)
T ss_pred cccccccCccCHHHHHHHHHHHhc
Confidence 1257899999999996
No 187
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=70.67 E-value=95 Score=36.63 Aligned_cols=109 Identities=12% Similarity=0.101 Sum_probs=60.5
Q ss_pred cEEEccccccHHHHHHHcCeeEEcccCCcCCccHHHHHHHHcCCCEEecCC----Ccccc-ccccCccEEEEcC-CCHHH
Q 002535 407 VVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDL----SNIRK-YVDDRVNGYLFPK-ENIKA 480 (911)
Q Consensus 407 ~V~flG~v~dV~~~L~~ADVfVlPS~~E~qGFplvLLEAMA~G~PVIaTd~----gGi~E-iV~dg~nGlLv~~-~D~ea 480 (911)
+|...+|..+..-++..-.+-.+-+ ..|++.+ +||+.+|+|+|+.+. .-... +.+++..+++... .....
T Consensus 336 nV~~~~W~PQ~~lll~H~~v~~FvT---HgG~nSt-~E~~~~GvP~v~~Plf~DQ~~Na~~i~~~g~~~v~~~~~~~~~~ 411 (496)
T KOG1192|consen 336 NVVLSKWAPQNDLLLDHPAVGGFVT---HGGWNST-LESIYSGVPMVCVPLFGDQPLNARLLVRHGGGGVLDKRDLVSEE 411 (496)
T ss_pred ceEEecCCCcHHHhcCCCcCcEEEE---CCcccHH-HHHHhcCCceecCCccccchhHHHHHHhCCCEEEEehhhcCcHH
Confidence 6888888866554422222333333 2266666 999999999996443 22334 4455554544433 12233
Q ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHh-cCHHHHHHHHHH
Q 002535 481 LTHIILQVITNGKISPFARNIASIGRRSVKN-LMALETIEGYAM 523 (911)
Q Consensus 481 LAeaI~~LLsd~~~p~~~~~mg~~ar~~ae~-Fs~e~ia~~y~~ 523 (911)
+.+++..++.+ ++..+...+-......+ .+. ..+..+.+
T Consensus 412 ~~~~~~~il~~---~~y~~~~~~l~~~~~~~p~~~-~~~~~~~e 451 (496)
T KOG1192|consen 412 LLEAIKEILEN---EEYKEAAKRLSEILRDQPISP-ELAVKWVE 451 (496)
T ss_pred HHHHHHHHHcC---hHHHHHHHHHHHHHHcCCCCH-HHHHHHHH
Confidence 88999999988 55554443333333322 455 55554433
No 188
>PF12038 DUF3524: Domain of unknown function (DUF3524); InterPro: IPR022701 This domain is functionally uncharacterised and is found in bacteria and eukaryotes. It is about 170 amino acids in length and is found associated with PF00534 from PFAM. Two conserved sequence motifs are found within this entry: HENQ and FNS. There is also a single completely conserved residue S that may be functionally important.
Probab=69.05 E-value=21 Score=36.58 Aligned_cols=120 Identities=14% Similarity=0.070 Sum_probs=67.1
Q ss_pred CCCCCChHHHHHHHHHHHHHHCCCeEEEEEeCCCcchhhhhhcCceEEEeccchhHHHhhhhcCccEEEEcCcchhHHHH
Q 002535 152 PDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVNSLEAKVVIS 231 (911)
Q Consensus 152 ~~L~~GGae~~v~~LAk~L~~~GyeV~V~t~~~g~~~~~~~~~gi~v~~l~~~~~l~~lI~~~kpDIIhvhs~~~~~~ia 231 (911)
.....|.-...+-.+++.+ .|++++++..... -.|+-.|-.+. ..........+|+|++.+....+.+.
T Consensus 7 e~y~ggSHk~~~~~L~~~~---~~~~~lltLP~r~--w~WRmRg~AL~------~a~~~~~~~~~dll~aTsmldLa~l~ 75 (168)
T PF12038_consen 7 EPYYGGSHKQWADGLAAHS---EHEWTLLTLPARK--WHWRMRGAALY------FAQQIPLSHSYDLLFATSMLDLATLR 75 (168)
T ss_pred ccccccCHHHHHHHHHHhc---cCCEEEEEcCCCc--cccccCCCHHH------HhhccccccCCCEEEeeccccHHHHH
Confidence 3344444444455555555 5788898875422 22332222211 11223455678999999987755566
Q ss_pred HHhhCCCCCCCEEEEEcCchhhHHHHHHHhhcchhhHhhHHHHHhhcceEEec
Q 002535 232 NIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRATVVVFP 284 (911)
Q Consensus 232 ~L~~~~~~giPvV~tiH~~~L~~~l~k~~~~~~d~lIs~~~~~~~~a~~vvfp 284 (911)
.+.. ...++|.++.+|++.+.++......+....-. .+-.+.-.|+.++|.
T Consensus 76 gL~p-~l~~~p~ilYFHENQl~YP~~~~~~rd~~~~~-~ni~saLaAD~v~FN 126 (168)
T PF12038_consen 76 GLRP-DLANVPKILYFHENQLAYPVSPGQERDFQYGM-NNIYSALAADRVVFN 126 (168)
T ss_pred hhcc-CCCCCCEEEEEecCcccCCCCCCccccccHHH-HHHHHHHhceeeeec
Confidence 6654 35789999999999888776443222222111 122223356666665
No 189
>KOG2884 consensus 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones]
Probab=68.17 E-value=71 Score=34.10 Aligned_cols=120 Identities=12% Similarity=0.106 Sum_probs=62.1
Q ss_pred CeEEEEEEeccccccccccHHHHHHHHHHhhhhcccCCCCCCCEEEEEEeCCCCCchHHHHHHHHHHcCCCCccEEEccc
Q 002535 334 DLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAA 413 (911)
Q Consensus 334 ~~vIL~VGsrl~~~KGiKg~dlLLeAl~~L~~~~p~~~~~~~~vkLvIVGG~~~e~Y~~~Le~la~~lgL~~~~V~flG~ 413 (911)
..+++|+|+..... +. .|++.+++|++..-. +.++.+|-... . .+.+..++..++-++
T Consensus 108 ~riVvFvGSpi~e~---ek--eLv~~akrlkk~~Va-------idii~FGE~~~-~-~e~l~~fida~N~~~-------- 165 (259)
T KOG2884|consen 108 QRIVVFVGSPIEES---EK--ELVKLAKRLKKNKVA-------IDIINFGEAEN-N-TEKLFEFIDALNGKG-------- 165 (259)
T ss_pred eEEEEEecCcchhh---HH--HHHHHHHHHHhcCee-------EEEEEeccccc-c-HHHHHHHHHHhcCCC--------
Confidence 45667777655553 22 345556666654433 55555551111 0 144445554333221
Q ss_pred cccHHHHHHHcCeeEEcccCCcCCccHHHHHHHHcCCCEEecCCCccc-cccccC-ccEEEEcCCCHHHHHHHHHHHHHc
Q 002535 414 EGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSNIR-KYVDDR-VNGYLFPKENIKALTHIILQVITN 491 (911)
Q Consensus 414 v~dV~~~L~~ADVfVlPS~~E~qGFplvLLEAMA~G~PVIaTd~gGi~-EiV~dg-~nGlLv~~~D~eaLAeaI~~LLsd 491 (911)
..++++..|+ + | +++-.-.-.|||.-+-|+.. ....+| ..-+=+++.+.-+||.|++--+..
T Consensus 166 --------~gshlv~Vpp---g---~--~L~d~l~ssPii~ge~g~a~~~~~a~g~~f~fgvdp~~DPELAlALRlSMEE 229 (259)
T KOG2884|consen 166 --------DGSHLVSVPP---G---P--LLSDALLSSPIIQGEDGGAAAGLGANGMDFEFGVDPEDDPELALALRLSMEE 229 (259)
T ss_pred --------CCceEEEeCC---C---c--cHHHHhhcCceeccCcccccccccccccccccCCCcccCHHHHHHHHhhHHH
Confidence 1345666665 1 2 44445566899988744432 222221 123345666777899999866655
No 190
>PF00862 Sucrose_synth: Sucrose synthase; InterPro: IPR000368 Sucrose synthases catalyse the synthesis of sucrose 2.4.1.13 from EC in the following reaction: UDP-glucose + D-fructose = UDP + sucrose This family includes the bulk of the sucrose synthase protein. However the carboxyl terminal region of the sucrose synthases belongs to the glycosyl transferase family IPR001296 from INTERPRO. This enzyme is found mainly in plants but also appears in bacteria.; GO: 0005985 sucrose metabolic process; PDB: 2R60_A 2R66_A 2R68_A 3S27_G 3S29_A 3S28_A.
Probab=67.72 E-value=30 Score=41.27 Aligned_cols=34 Identities=12% Similarity=0.175 Sum_probs=24.7
Q ss_pred cCccEEEEcCcchhHHHHHHhhCCCCCCCEEEEEcC
Q 002535 214 LNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHE 249 (911)
Q Consensus 214 ~kpDIIhvhs~~~~~~ia~L~~~~~~giPvV~tiH~ 249 (911)
..||+||.|...+. .++.++.. ..++|...+.|.
T Consensus 400 ~~PdlI~GnYsDgn-lvA~LLs~-~lgv~~~~iaHs 433 (550)
T PF00862_consen 400 GKPDLIIGNYSDGN-LVASLLSR-KLGVTQCFIAHS 433 (550)
T ss_dssp S--SEEEEEHHHHH-HHHHHHHH-HHT-EEEEE-SS
T ss_pred CCCcEEEeccCcch-HHHHHHHh-hcCCceehhhhc
Confidence 57999999999884 77777755 578999999995
No 191
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=66.82 E-value=28 Score=38.89 Aligned_cols=101 Identities=14% Similarity=0.139 Sum_probs=59.5
Q ss_pred CCeEEEEEEeccccccccccHHHHHHHHHHhhhhcccCCCCCCCEEEEEE-eCCCCCchHHHHHHHHHHcCCCCccEEEc
Q 002535 333 DDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMIL-SGDSTSNYSVVIEAIAHNLHYPLGVVKHM 411 (911)
Q Consensus 333 d~~vIL~VGsrl~~~KGiKg~dlLLeAl~~L~~~~p~~~~~~~~vkLvIV-GG~~~e~Y~~~Le~la~~lgL~~~~V~fl 411 (911)
.+.+++..|+.. ..|.| -.+...+.+..+.+++ .++++. |++.+ .+..+++++ ..+ .+.+.
T Consensus 178 ~~~i~~~~~~s~-~~k~W-p~e~~a~li~~l~~~~---------~~ivl~~G~~~e---~~~~~~i~~--~~~--~~~l~ 239 (322)
T PRK10964 178 GPYLVFLHATTR-DDKHW-PEAHWRELIGLLAPSG---------LRIKLPWGAEHE---EQRAKRLAE--GFP--YVEVL 239 (322)
T ss_pred CCeEEEEeCCCc-ccccC-CHHHHHHHHHHHHHCC---------CeEEEeCCCHHH---HHHHHHHHc--cCC--cceec
Confidence 344444555433 22333 3445566666664432 577776 54432 133344443 222 36666
Q ss_pred ccc--ccHHHHHHHcCeeEEcccCCcCCccHHHHHHHHcCCCEEecCCC
Q 002535 412 AAE--GDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLS 458 (911)
Q Consensus 412 G~v--~dV~~~L~~ADVfVlPS~~E~qGFplvLLEAMA~G~PVIaTd~g 458 (911)
|.. .++..+++.||++|..- +..+-=|-|+|+|+|+--.+
T Consensus 240 g~~sL~elaali~~a~l~I~nD-------SGp~HlA~A~g~p~valfGp 281 (322)
T PRK10964 240 PKLSLEQVARVLAGAKAVVSVD-------TGLSHLTAALDRPNITLYGP 281 (322)
T ss_pred CCCCHHHHHHHHHhCCEEEecC-------CcHHHHHHHhCCCEEEEECC
Confidence 743 88999999999999764 23556688999999985433
No 192
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=60.17 E-value=12 Score=38.35 Aligned_cols=90 Identities=10% Similarity=0.084 Sum_probs=49.9
Q ss_pred CCChHHHHHHHHHHHH--HHCCCeEEEEEeCCCcchhhhh---h--------cCce-EEEeccc--h----------hHH
Q 002535 155 LIDPQQLQMVTIAIAL--REIGYAIQVYSLEDGRAHEVWR---N--------IGVP-VAILQTG--R----------EKA 208 (911)
Q Consensus 155 ~~GGae~~v~~LAk~L--~~~GyeV~V~t~~~g~~~~~~~---~--------~gi~-v~~l~~~--~----------~l~ 208 (911)
+.||-...+..+++.+ ....++..+++..+.......+ + ..++ ...+... . ...
T Consensus 6 gsGGHt~eml~L~~~~~~~~~~~~~~ivt~~d~~S~~k~~~~~~~~~~~~~~~~~~r~r~v~q~~~~~~~~~l~~~~~~~ 85 (170)
T PF08660_consen 6 GSGGHTAEMLRLLKALDNDRYQPRTYIVTEGDKQSRSKAEQLEKSSSKRHKILEIPRAREVGQSYLTSIFTTLRAFLQSL 85 (170)
T ss_pred cCcHHHHHHHHHHHHhhhhcCCCcEEEEEcCCcccHHHHHHHHHhccccceeeccceEEEechhhHhhHHHHHHHHHHHH
Confidence 4589999999999999 3345566677766543222111 1 1111 1111110 0 112
Q ss_pred HhhhhcCccEEEEcCcchhHHHHHHhhCCCC------CCCEEEE
Q 002535 209 SFVNWLNYDGILVNSLEAKVVISNIMQEPFK------SLPLVWT 246 (911)
Q Consensus 209 ~lI~~~kpDIIhvhs~~~~~~ia~L~~~~~~------giPvV~t 246 (911)
.++.+.+||+|+++.+... +...++.+ .. +.|+||.
T Consensus 86 ~il~r~rPdvii~nGpg~~-vp~~~~~~-l~~~~~~~~~kiIyI 127 (170)
T PF08660_consen 86 RILRRERPDVIISNGPGTC-VPVCLAAK-LLRLLGLRGSKIIYI 127 (170)
T ss_pred HHHHHhCCCEEEEcCCcee-eHHHHHHH-HHHHhhccCCcEEEE
Confidence 2355579999999998773 43333322 22 7888864
No 193
>KOG1021 consensus Acetylglucosaminyltransferase EXT1/exostosin 1 [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=59.83 E-value=75 Score=37.90 Aligned_cols=111 Identities=11% Similarity=0.100 Sum_probs=67.9
Q ss_pred CCEEEEEEeCCCCCchHHHHHHHHHH-cCCCCccEEEc-cc-----cccHHHHHHHcCeeEEcccCCcCCccHHHHHHHH
Q 002535 375 SPIKVMILSGDSTSNYSVVIEAIAHN-LHYPLGVVKHM-AA-----EGDVDSVLNTADVVIYGSFLEEQTFPEILVKALC 447 (911)
Q Consensus 375 ~~vkLvIVGG~~~e~Y~~~Le~la~~-lgL~~~~V~fl-G~-----v~dV~~~L~~ADVfVlPS~~E~qGFplvLLEAMA 447 (911)
+.+-+.++|+......+..|-++.++ .+... .+... |. .....+.++.|..++.|.-.+. ..-.+.||+.
T Consensus 289 R~~L~~F~G~~~~~~iR~~L~~~~~~~~~~~~-~~~~~~g~~~~~~~~~y~~~m~~S~FCL~p~Gd~~--ts~R~fdai~ 365 (464)
T KOG1021|consen 289 RPILAFFAGAPAGGQIRSILLDLWKKDPDTEV-FVNCPRGKVSCDRPLNYMEGMQDSKFCLCPPGDTP--TSPRLFDAIV 365 (464)
T ss_pred CceEEEEeccccCCcHHHHHHHHhhcCcCccc-cccCCCCccccCCcchHHHHhhcCeEEECCCCCCc--ccHhHHHHHH
Confidence 34677788864444445555555553 11111 12222 11 1467889999999999997774 6779999999
Q ss_pred cCC-CEEecCCC--ccccccccCccEEEEcCCCHHHHHHHHHHHHHc
Q 002535 448 FRK-PIIAPDLS--NIRKYVDDRVNGYLFPKENIKALTHIILQVITN 491 (911)
Q Consensus 448 ~G~-PVIaTd~g--Gi~EiV~dg~nGlLv~~~D~eaLAeaI~~LLsd 491 (911)
.|| |||.++.- ...+.++-..-++.++..+...+ |.++|..
T Consensus 366 ~gCvPViisd~~~lpf~~~~d~~~fSV~v~~~~v~~~---~~~iL~~ 409 (464)
T KOG1021|consen 366 SGCVPVIISDGIQLPFGDVLDWTEFSVFVPEKDVPEL---IKNILLS 409 (464)
T ss_pred hCCccEEEcCCcccCcCCCccceEEEEEEEHHHhhhH---HHHHHHh
Confidence 999 99998863 23344444455667764444444 5555544
No 194
>COG1887 TagB Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC [Cell envelope biogenesis, outer membrane]
Probab=58.70 E-value=3.5e+02 Score=31.55 Aligned_cols=75 Identities=17% Similarity=0.293 Sum_probs=51.5
Q ss_pred EEEccccccHHHHHHHcCeeEEcccCCcCCccHHHHHHHHcCCCEEecCCCcc-----cccc---ccCccEEEEcCCCHH
Q 002535 408 VKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSNI-----RKYV---DDRVNGYLFPKENIK 479 (911)
Q Consensus 408 V~flG~v~dV~~~L~~ADVfVlPS~~E~qGFplvLLEAMA~G~PVIaTd~gGi-----~EiV---~dg~nGlLv~~~D~e 479 (911)
+.......++..+|..+|++|. + ++.++.|+|...+|||.--.-.- +... ....-|-++. +.+
T Consensus 271 ~~~vs~~~di~dll~~sDiLIT----D---ySSv~fdf~~l~KPiify~~D~~~y~~~rg~~~d~~~~~Pg~~~~--~~~ 341 (388)
T COG1887 271 VLDVSDNADINDLLLVSDILIT----D---YSSVIFDFMLLDKPIIFYTYDLEQYDELRGFYLDYKFEAPGEVVE--TQE 341 (388)
T ss_pred eEecccchhHHHHHhhhCEEEe----e---chHHHHHHHHhcCcEEEEecChHHHHhhhhhhhhHHhcCCccccc--cHH
Confidence 4444445789999999999993 2 78899999999999997422110 1111 1122344554 688
Q ss_pred HHHHHHHHHHHc
Q 002535 480 ALTHIILQVITN 491 (911)
Q Consensus 480 aLAeaI~~LLsd 491 (911)
++.++|.....+
T Consensus 342 ~li~ai~~~~~~ 353 (388)
T COG1887 342 ELIDAIKPYDED 353 (388)
T ss_pred HHHHHHHhhhcc
Confidence 999999988886
No 195
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=58.29 E-value=1.2e+02 Score=31.98 Aligned_cols=121 Identities=14% Similarity=0.109 Sum_probs=67.9
Q ss_pred HHHHHHHHHHhhhhcccCCCCCCCEEEEEEeCCCCCchHHHHHHHHHHcCCCCccEEEcccc--ccHHHHHHHcCeeEEc
Q 002535 353 HALILRALLPLFSEVSVENESNSPIKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAE--GDVDSVLNTADVVIYG 430 (911)
Q Consensus 353 ~dlLLeAl~~L~~~~p~~~~~~~~vkLvIVGG~~~e~Y~~~Le~la~~lgL~~~~V~flG~v--~dV~~~L~~ADVfVlP 430 (911)
...|.+|+.-+..-.+. ++++||... .....+++.++..|-....=+|+|-. +-...-+..=|+++..
T Consensus 46 ~~~L~~A~~~i~~i~~~--------~ILfVgtk~--~~~~~V~~~A~~~g~~~v~~RWlgGtLTN~~~~~~~~Pdlliv~ 115 (196)
T TIGR01012 46 DERLRVAAKFLVRIEPE--------DILVVSARI--YGQKPVLKFAKVTGARAIAGRFTPGTFTNPMQKAFREPEVVVVT 115 (196)
T ss_pred HHHHHHHHHHHHHhhCC--------eEEEEecCH--HHHHHHHHHHHHhCCceECCeeCCCCCCCccccccCCCCEEEEE
Confidence 34445555544433333 889999322 23467778887766543122456522 2222234555676665
Q ss_pred ccCCcCCccHHHHHHHHcCCCEEe-cCCCccccccccCccEEEEcCC-CHHHHHHHHHHHHHc
Q 002535 431 SFLEEQTFPEILVKALCFRKPIIA-PDLSNIRKYVDDRVNGYLFPKE-NIKALTHIILQVITN 491 (911)
Q Consensus 431 S~~E~qGFplvLLEAMA~G~PVIa-Td~gGi~EiV~dg~nGlLv~~~-D~eaLAeaI~~LLsd 491 (911)
...++ ..++.||...|+|+|+ .|.-..+..| -+.+|.+ |.-.-...|..++.+
T Consensus 116 dp~~~---~~Av~EA~~l~IP~Iai~DTn~dp~~v-----dypIP~Ndds~~Si~li~~lla~ 170 (196)
T TIGR01012 116 DPRAD---HQALKEASEVGIPIVALCDTDNPLRYV-----DLVIPTNNKGRHSLALIYWLLAR 170 (196)
T ss_pred CCccc---cHHHHHHHHcCCCEEEEeeCCCCCccC-----CEEECCCCchHHHHHHHHHHHHH
Confidence 54443 7899999999999998 3443444444 3455553 344444555566655
No 196
>PF11071 DUF2872: Protein of unknown function (DUF2872); InterPro: IPR019884 This entry represents a family of uncharacterised proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=58.27 E-value=36 Score=33.51 Aligned_cols=69 Identities=17% Similarity=0.145 Sum_probs=38.6
Q ss_pred HHHHHHcCeeEEcc--c---CCcCCccHHHHHHHHcCCCEEecCCCccccccccCccEEEEcCCCHHHHHHHHHHHH
Q 002535 418 DSVLNTADVVIYGS--F---LEEQTFPEILVKALCFRKPIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVI 489 (911)
Q Consensus 418 ~~~L~~ADVfVlPS--~---~E~qGFplvLLEAMA~G~PVIaTd~gGi~EiV~dg~nGlLv~~~D~eaLAeaI~~LL 489 (911)
..++..||++|.-- . +. -..-.--|.|.|+|.|.-.-..+..-+.+-.+.-.+-..+++..++.+..++
T Consensus 67 ~~li~~aDvVVvrFGekYKQWN---aAfDAg~a~AlgKplI~lh~~~~~HpLKEvda~A~a~~et~~Qvv~iL~Yv~ 140 (141)
T PF11071_consen 67 RTLIEKADVVVVRFGEKYKQWN---AAFDAGYAAALGKPLITLHPEELHHPLKEVDAAALAVAETPEQVVEILRYVL 140 (141)
T ss_pred HHHHhhCCEEEEEechHHHHHH---HHhhHHHHHHcCCCeEEecchhccccHHHHhHhhHhhhCCHHHHHHHHHHHh
Confidence 45899999998642 1 11 1222335789999999865443322222111122233456777777776654
No 197
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.65 E-value=30 Score=40.00 Aligned_cols=108 Identities=13% Similarity=0.106 Sum_probs=67.9
Q ss_pred eccchhhhhhcccccccccccccccccC--CCCCCCEEEEEeCCCCCChHHHHHHHHHHHHHHCCCeEEEEEeCCC----
Q 002535 112 LPLKLMEKFQSEDKDVNLTSVFHRKLHR--FGYRKPQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDG---- 185 (911)
Q Consensus 112 ~p~~~~~~f~~~~~~~~~~~~~~~~~~r--~~~rkprIalI~~~L~~GGae~~v~~LAk~L~~~GyeV~V~t~~~g---- 185 (911)
-+-++.++....+. ...+ .....- ++.++|.+.++.+ +..+|-...+..+|..++++||.+.++|...-
T Consensus 70 nk~r~i~~~vf~eL---~kl~-dp~~~~~~~~K~kpsVimfVG-LqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagA 144 (483)
T KOG0780|consen 70 NKRRIIQKAVFDEL---VKLL-DPGKSALQPKKGKPSVIMFVG-LQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGA 144 (483)
T ss_pred CHHHHHHHHHHHHH---HHHh-CCCCcccccccCCCcEEEEEe-ccCCCcceeHHHHHHHHHhcCCceeEEeecccccch
Confidence 34345555555544 2222 233333 4677777766654 66677888899999999999999999997552
Q ss_pred --cchhhhhhcCceEEEeccchhHHH-------hhhhcCccEEEEcCc
Q 002535 186 --RAHEVWRNIGVPVAILQTGREKAS-------FVNWLNYDGILVNSL 224 (911)
Q Consensus 186 --~~~~~~~~~gi~v~~l~~~~~l~~-------lI~~~kpDIIhvhs~ 224 (911)
++.......++|++.-.......+ -.++.++|+|++.+.
T Consensus 145 fDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~fKke~fdvIIvDTS 192 (483)
T KOG0780|consen 145 FDQLKQNATKARVPFYGSYTEADPVKIASEGVDRFKKENFDVIIVDTS 192 (483)
T ss_pred HHHHHHHhHhhCCeeEecccccchHHHHHHHHHHHHhcCCcEEEEeCC
Confidence 223334556777665433322222 245679999999764
No 198
>COG2247 LytB Putative cell wall-binding domain [Cell envelope biogenesis, outer membrane]
Probab=54.72 E-value=60 Score=36.63 Aligned_cols=84 Identities=17% Similarity=0.143 Sum_probs=52.4
Q ss_pred HHHhhhhcccCCCCCCCEEEEEEeCCCCCchHHHHHHHHHHcCCCCccEEEcccc-----ccHHHHHH-----HcC--ee
Q 002535 360 LLPLFSEVSVENESNSPIKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAE-----GDVDSVLN-----TAD--VV 427 (911)
Q Consensus 360 l~~L~~~~p~~~~~~~~vkLvIVGG~~~e~Y~~~Le~la~~lgL~~~~V~flG~v-----~dV~~~L~-----~AD--Vf 427 (911)
..++.+..|+ .++|+||+..- .+.++...+.+|++- ++.-|.. +.+...++ +.+ -+
T Consensus 68 ~~eI~~lnpd--------~VLIIGGp~AV--s~~yE~~Lks~GitV--~RigG~nR~ETa~~v~~~~~~~yp~af~n~kv 135 (337)
T COG2247 68 LDEIIELNPD--------LVLIIGGPIAV--SPNYENALKSLGITV--KRIGGANRYETAEKVAKFFREDYPNAFKNVKV 135 (337)
T ss_pred HHHHHhhCCc--------eEEEECCCCcC--ChhHHHHHHhCCcEE--EEecCcchHHHHHHHHHHHHhhchhhhcCeEE
Confidence 4556666777 88899975432 144456666777763 5555532 33444554 444 44
Q ss_pred EEcccCCcCCccHHHHHHHHcCC-CEEecCCC
Q 002535 428 IYGSFLEEQTFPEILVKALCFRK-PIIAPDLS 458 (911)
Q Consensus 428 VlPS~~E~qGFplvLLEAMA~G~-PVIaTd~g 458 (911)
|..+-++ ++-.++|+|--|+ ||+.++..
T Consensus 136 vvv~GwD---y~~~~~e~~k~~~~p~~~~n~~ 164 (337)
T COG2247 136 VVVYGWD---YADALMELMKEGIVPVILKNTS 164 (337)
T ss_pred EEEeccc---cHHHHHHHHhcCcceeEecccc
Confidence 4455555 4559999999998 78877754
No 199
>KOG0832 consensus Mitochondrial/chloroplast ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=54.66 E-value=1.8e+02 Score=31.44 Aligned_cols=59 Identities=20% Similarity=0.270 Sum_probs=39.3
Q ss_pred CeeEEcccCCcCCccHHHHHHHHcCCCEEec-CCCccccccccCccEEEEcCC-CHHHHHHHHHHHHHc
Q 002535 425 DVVIYGSFLEEQTFPEILVKALCFRKPIIAP-DLSNIRKYVDDRVNGYLFPKE-NIKALTHIILQVITN 491 (911)
Q Consensus 425 DVfVlPS~~E~qGFplvLLEAMA~G~PVIaT-d~gGi~EiV~dg~nGlLv~~~-D~eaLAeaI~~LLsd 491 (911)
|++|.-...|. -.+++||.-+++|+|+- |.-..++++ -+-+|.+ |.-.-.+-+..++.-
T Consensus 175 D~vvvln~~e~---~sAilEA~K~~IPTIgIVDtN~~P~li-----TYpVPaNDDs~~sv~f~~~l~k~ 235 (251)
T KOG0832|consen 175 DLVVVLNPEEN---HSAILEAAKMAIPTIGIVDTNCNPELI-----TYPVPANDDSPASVEFILNLLKR 235 (251)
T ss_pred ceeEecCcccc---cHHHHHHHHhCCCeEEEecCCCCccce-----eeccCCCCCcHHHHHHHHHHHHH
Confidence 99888887774 78999999999999872 333355655 3556663 344444555555543
No 200
>PRK04020 rps2P 30S ribosomal protein S2; Provisional
Probab=51.58 E-value=1.8e+02 Score=30.92 Aligned_cols=123 Identities=14% Similarity=0.096 Sum_probs=68.6
Q ss_pred ccHHHHHHHHHHhhhhcccCCCCCCCEEEEEEeCCCCCchHHHHHHHHHHcCCCCccEEEcc-cc-ccHHHHHHHcCeeE
Q 002535 351 LEHALILRALLPLFSEVSVENESNSPIKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMA-AE-GDVDSVLNTADVVI 428 (911)
Q Consensus 351 Kg~dlLLeAl~~L~~~~p~~~~~~~~vkLvIVGG~~~e~Y~~~Le~la~~lgL~~~~V~flG-~v-~dV~~~L~~ADVfV 428 (911)
|=...+..|+.-+....+. ++++||... .....+++.++..|.....=+++| .. +-...-+..=|+++
T Consensus 50 kT~~~L~~A~~~i~~~~~~--------~ILfVgTk~--~~~~~v~k~A~~~g~~~v~~RWlgG~LTN~~~~~~~~Pdlii 119 (204)
T PRK04020 50 KTDERIRIAAKFLSRYEPE--------KILVVSSRQ--YGQKPVQKFAEVVGAKAITGRFIPGTLTNPSLKGYIEPDVVV 119 (204)
T ss_pred HHHHHHHHHHHHHHHhcCC--------eEEEEeCCH--HHHHHHHHHHHHhCCeeecCccCCCcCcCcchhccCCCCEEE
Confidence 3344456666555543333 788888322 234778888887765431114555 22 22222233456666
Q ss_pred EcccCCcCCccHHHHHHHHcCCCEEe-cCCCccccccccCccEEEEcCCC-HHHHHHHHHHHHHc
Q 002535 429 YGSFLEEQTFPEILVKALCFRKPIIA-PDLSNIRKYVDDRVNGYLFPKEN-IKALTHIILQVITN 491 (911)
Q Consensus 429 lPS~~E~qGFplvLLEAMA~G~PVIa-Td~gGi~EiV~dg~nGlLv~~~D-~eaLAeaI~~LLsd 491 (911)
......+ ..++.||--.|+|||+ .|.-..+++| .+.+|.+| .-.-...+..++.+
T Consensus 120 v~dp~~~---~~AI~EA~kl~IP~IaivDTn~dp~~V-----dypIP~Ndds~~SI~li~~ll~~ 176 (204)
T PRK04020 120 VTDPRGD---AQAVKEAIEVGIPVVALCDTDNLTSNV-----DLVIPTNNKGRKALALVYWLLAR 176 (204)
T ss_pred EECCccc---HHHHHHHHHhCCCEEEEEeCCCCcccC-----ceeECCCCchHHHHHHHHHHHHH
Confidence 5543332 7899999999999998 3444444544 35566543 33444455555554
No 201
>PLN03015 UDP-glucosyl transferase
Probab=50.40 E-value=28 Score=41.51 Aligned_cols=78 Identities=10% Similarity=0.032 Sum_probs=46.7
Q ss_pred EEEccccccHHHHHHHcCeeEEcccCCcCCccHHHHHHHHcCCCEEecCCCc----ccccc-ccCccEEEEc------CC
Q 002535 408 VKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSN----IRKYV-DDRVNGYLFP------KE 476 (911)
Q Consensus 408 V~flG~v~dV~~~L~~ADVfVlPS~~E~qGFplvLLEAMA~G~PVIaTd~gG----i~EiV-~dg~nGlLv~------~~ 476 (911)
+.+.++..+. ++++...+-.+-+. +--++++||+++|+|+|+-...+ ...++ +.-..|+-+. .-
T Consensus 337 l~v~~W~PQ~-~vL~h~~vg~fvtH----~GwnS~~Eai~~GvP~v~~P~~~DQ~~na~~~~~~~gvg~~~~~~~~~~~v 411 (470)
T PLN03015 337 LVVTQWAPQV-EILSHRSIGGFLSH----CGWSSVLESLTKGVPIVAWPLYAEQWMNATLLTEEIGVAVRTSELPSEKVI 411 (470)
T ss_pred eEEEecCCHH-HHhccCccCeEEec----CCchhHHHHHHcCCCEEecccccchHHHHHHHHHHhCeeEEecccccCCcc
Confidence 4455655332 34554444333332 12468899999999999966532 23333 2323455552 12
Q ss_pred CHHHHHHHHHHHHH
Q 002535 477 NIKALTHIILQVIT 490 (911)
Q Consensus 477 D~eaLAeaI~~LLs 490 (911)
+.++++++|.+++.
T Consensus 412 ~~e~i~~~v~~lm~ 425 (470)
T PLN03015 412 GREEVASLVRKIVA 425 (470)
T ss_pred CHHHHHHHHHHHHc
Confidence 57899999999995
No 202
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=48.45 E-value=97 Score=33.83 Aligned_cols=99 Identities=13% Similarity=0.117 Sum_probs=62.3
Q ss_pred cHHHHHHHHHHhhhhcccCCCCCCCEEEEEEe--CCCCCchHHHHHHHHHHcCCCCccEEEccc--c-----ccHHHHHH
Q 002535 352 EHALILRALLPLFSEVSVENESNSPIKVMILS--GDSTSNYSVVIEAIAHNLHYPLGVVKHMAA--E-----GDVDSVLN 422 (911)
Q Consensus 352 g~dlLLeAl~~L~~~~p~~~~~~~~vkLvIVG--G~~~e~Y~~~Le~la~~lgL~~~~V~flG~--v-----~dV~~~L~ 422 (911)
+-..+.+.+-++... ++ .++.++. +.....|.+...+.-+++|... |..+.. . +++.+.+.
T Consensus 12 ~~~~i~~~~~~lag~-~~-------~rI~~iptAS~~~~~~~~~~~~~~~~lG~~~--v~~l~i~~r~~a~~~~~~~~l~ 81 (250)
T TIGR02069 12 GDREILREFVSRAGG-ED-------AIIVIITSASEEPREVGERYITIFSRLGVKE--VKILDVREREDASDENAIALLS 81 (250)
T ss_pred ChHHHHHHHHHHhCC-CC-------ceEEEEeCCCCChHHHHHHHHHHHHHcCCce--eEEEecCChHHccCHHHHHHHh
Confidence 344466666555432 22 5777776 3333455566666677788865 443332 1 35678899
Q ss_pred HcCeeEEcc--------cCCcCCccHHHHHHHHcCCCEEecCCCcc
Q 002535 423 TADVVIYGS--------FLEEQTFPEILVKALCFRKPIIAPDLSNI 460 (911)
Q Consensus 423 ~ADVfVlPS--------~~E~qGFplvLLEAMA~G~PVIaTd~gGi 460 (911)
.||++.+.. .+.+.+.--.+-++...|+|++.+..|.+
T Consensus 82 ~ad~I~~~GGnq~~l~~~l~~t~l~~~l~~~~~~G~vi~G~SAGA~ 127 (250)
T TIGR02069 82 NATGIFFTGGDQLRITSLLGDTPLLDRLRKRVHEGIILGGTSAGAA 127 (250)
T ss_pred hCCEEEEeCCCHHHHHHHHcCCcHHHHHHHHHHcCCeEEEccHHHH
Confidence 999998764 22221344567789999999999988764
No 203
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=47.16 E-value=35 Score=32.68 Aligned_cols=51 Identities=14% Similarity=0.101 Sum_probs=35.5
Q ss_pred CCCCCChHHHHHHHHHHHHHHCCCeEEEEEeCCCcchhhhhhcCceEEEeccc
Q 002535 152 PDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTG 204 (911)
Q Consensus 152 ~~L~~GGae~~v~~LAk~L~~~GyeV~V~t~~~g~~~~~~~~~gi~v~~l~~~ 204 (911)
.....+|--.-...++++|+++||+|.+.+.. ......+..|+++..+...
T Consensus 4 ~~~Gt~Ghv~P~lala~~L~~rGh~V~~~~~~--~~~~~v~~~Gl~~~~~~~~ 54 (139)
T PF03033_consen 4 ATGGTRGHVYPFLALARALRRRGHEVRLATPP--DFRERVEAAGLEFVPIPGD 54 (139)
T ss_dssp EEESSHHHHHHHHHHHHHHHHTT-EEEEEETG--GGHHHHHHTT-EEEESSSC
T ss_pred EEcCChhHHHHHHHHHHHHhccCCeEEEeecc--cceecccccCceEEEecCC
Confidence 34445666677889999999999999987753 3445557778777766554
No 204
>PRK10360 DNA-binding transcriptional activator UhpA; Provisional
Probab=45.95 E-value=2.1e+02 Score=28.38 Aligned_cols=67 Identities=15% Similarity=0.122 Sum_probs=47.9
Q ss_pred cCeeEEcccCCcCCccHHHHHHHHcCCCEEecCCCcc----ccccccCccEEEEcCCCHHHHHHHHHHHHHc
Q 002535 424 ADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSNI----RKYVDDRVNGYLFPKENIKALTHIILQVITN 491 (911)
Q Consensus 424 ADVfVlPS~~E~qGFplvLLEAMA~G~PVIaTd~gGi----~EiV~dg~nGlLv~~~D~eaLAeaI~~LLsd 491 (911)
.|++++-..... .-+..+++.+....|||....... ...+..|..|++..|-+.+.+.++|..++..
T Consensus 48 ~dlvi~d~~~~~-~~g~~~~~~l~~~~~vi~~s~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~~ 118 (196)
T PRK10360 48 VQVCICDISMPD-ISGLELLSQLPKGMATIMLSVHDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVATG 118 (196)
T ss_pred CCEEEEeCCCCC-CCHHHHHHHHccCCCEEEEECCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHcC
Confidence 588887654332 346778888877788766432222 2345567889999999999999999998875
No 205
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=44.90 E-value=88 Score=33.04 Aligned_cols=81 Identities=22% Similarity=0.196 Sum_probs=53.2
Q ss_pred EEEEEEe--CCCCCchHHHHHHHHHHc-CCCCccEEEccccccHHHHHHHcCeeEEcc---------cCCcCCccHHHHH
Q 002535 377 IKVMILS--GDSTSNYSVVIEAIAHNL-HYPLGVVKHMAAEGDVDSVLNTADVVIYGS---------FLEEQTFPEILVK 444 (911)
Q Consensus 377 vkLvIVG--G~~~e~Y~~~Le~la~~l-gL~~~~V~flG~v~dV~~~L~~ADVfVlPS---------~~E~qGFplvLLE 444 (911)
.++.++. ....++|...+++.-.++ |... .+...-..++..+.+..||++++|. ..+. |+--.+-+
T Consensus 32 ~~i~~IptAs~~~~~~~~~~~~a~~~l~G~~~-~~~~~~~~~~~~~~l~~ad~I~l~GG~~~~~~~~l~~~-~l~~~l~~ 109 (212)
T cd03146 32 PKVLFVPTASGDRDEYTARFYAAFESLRGVEV-SHLHLFDTEDPLDALLEADVIYVGGGNTFNLLAQWREH-GLDAILKA 109 (212)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHhhccCcEE-EEEeccCcccHHHHHhcCCEEEECCchHHHHHHHHHHc-CHHHHHHH
Confidence 6888888 333445666666666767 6654 2222111357789999999999995 1222 45556667
Q ss_pred HHHcCCCEEecCCCc
Q 002535 445 ALCFRKPIIAPDLSN 459 (911)
Q Consensus 445 AMA~G~PVIaTd~gG 459 (911)
+...|+|++.+-.|.
T Consensus 110 ~~~~g~~i~G~SAGa 124 (212)
T cd03146 110 ALERGVVYIGWSAGS 124 (212)
T ss_pred HHHCCCEEEEECHhH
Confidence 777899999887664
No 206
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=44.21 E-value=53 Score=33.45 Aligned_cols=41 Identities=17% Similarity=0.221 Sum_probs=30.1
Q ss_pred CCCCCEEEEEeCCCCCChHHHHHHHHHHHHHHCCCeEEEEEeCC
Q 002535 141 GYRKPQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLED 184 (911)
Q Consensus 141 ~~rkprIalI~~~L~~GGae~~v~~LAk~L~~~GyeV~V~t~~~ 184 (911)
....++++++++..+.||-- +.+|+.|.+.|++|+|+...+
T Consensus 22 ~~~~~~v~il~G~GnNGgDg---l~~AR~L~~~G~~V~v~~~~~ 62 (169)
T PF03853_consen 22 SPKGPRVLILCGPGNNGGDG---LVAARHLANRGYNVTVYLVGP 62 (169)
T ss_dssp CCTT-EEEEEE-SSHHHHHH---HHHHHHHHHTTCEEEEEEEES
T ss_pred ccCCCeEEEEECCCCChHHH---HHHHHHHHHCCCeEEEEEEec
Confidence 45678888888887666654 467889999999999966644
No 207
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=43.94 E-value=1.7e+02 Score=30.42 Aligned_cols=87 Identities=13% Similarity=0.010 Sum_probs=42.0
Q ss_pred ChHHHHHHHHHHHHHHC--CCeEEEEEeCCCcchhhhhh--cCceEEEec--cchhHHHhhhhcCccEEEEcCcchhHHH
Q 002535 157 DPQQLQMVTIAIALREI--GYAIQVYSLEDGRAHEVWRN--IGVPVAILQ--TGREKASFVNWLNYDGILVNSLEAKVVI 230 (911)
Q Consensus 157 GGae~~v~~LAk~L~~~--GyeV~V~t~~~g~~~~~~~~--~gi~v~~l~--~~~~l~~lI~~~kpDIIhvhs~~~~~~i 230 (911)
-|--..+..+++.|.++ |+.|.+-+..........+. -.+.+..++ .......+++..+||++++......+.+
T Consensus 31 vGE~~a~~~Li~~l~~~~p~~~illT~~T~tg~~~~~~~~~~~v~~~~~P~D~~~~~~rfl~~~~P~~~i~~EtElWPnl 110 (186)
T PF04413_consen 31 VGEVNAARPLIKRLRKQRPDLRILLTTTTPTGREMARKLLPDRVDVQYLPLDFPWAVRRFLDHWRPDLLIWVETELWPNL 110 (186)
T ss_dssp HHHHHHHHHHHHHHTT---TS-EEEEES-CCHHHHHHGG-GGG-SEEE---SSHHHHHHHHHHH--SEEEEES----HHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCeEEEEecCCchHHHHHHhCCCCeEEEEeCccCHHHHHHHHHHhCCCEEEEEccccCHHH
Confidence 46667888999999987 77777766544221111111 122233333 3345677888899999988776664444
Q ss_pred HHHhhCCCCCCCEEE
Q 002535 231 SNIMQEPFKSLPLVW 245 (911)
Q Consensus 231 a~L~~~~~~giPvV~ 245 (911)
...+ ...++|++.
T Consensus 111 l~~a--~~~~ip~~L 123 (186)
T PF04413_consen 111 LREA--KRRGIPVVL 123 (186)
T ss_dssp HHH-------S-EEE
T ss_pred HHHH--hhcCCCEEE
Confidence 4434 356789764
No 208
>PF05686 Glyco_transf_90: Glycosyl transferase family 90; InterPro: IPR006598 Cryptococcus neoformans is a pathogenic fungus which most commonly affects the central nervous system and causes fatal meningoencephalitis primarily in patients with AIDS. This fungus produces a thick extracellular polysaccharide capsule which is well recognised as a virulence factor. CAP10 is required for capsule formation and virulence [].
Probab=42.89 E-value=86 Score=36.59 Aligned_cols=92 Identities=13% Similarity=0.101 Sum_probs=63.4
Q ss_pred CcCCccHHHHHHHHcCCCEEecCCC---ccccccccCccEEEEcC-CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH
Q 002535 434 EEQTFPEILVKALCFRKPIIAPDLS---NIRKYVDDRVNGYLFPK-ENIKALTHIILQVITNGKISPFARNIASIGRRSV 509 (911)
Q Consensus 434 E~qGFplvLLEAMA~G~PVIaTd~g---Gi~EiV~dg~nGlLv~~-~D~eaLAeaI~~LLsd~~~p~~~~~mg~~ar~~a 509 (911)
|+-+++..+---|+||-.|+..+.. -..+.+.+.++=+=+.. +|.++|.++|..+.++ ++..++++++|++.+
T Consensus 222 dG~~~S~RlkylL~c~SvVl~~~~~~~e~f~~~L~P~vHYVPV~~~~d~sdL~~~v~w~~~~---~~~A~~IA~~g~~f~ 298 (395)
T PF05686_consen 222 DGNAWSGRLKYLLACNSVVLKVKSPYYEFFYRALKPWVHYVPVKRDDDLSDLEEKVEWLNAH---DDEAQRIAENGQRFA 298 (395)
T ss_pred CCceeehhHHHHHcCCceEEEeCCcHHHHHHhhhcccccEEEeccccchhhHHHHhhhcccC---hHHHHHHHHHHHHHH
Confidence 3335666666778888888775422 11233344444333333 4789999999999999 999999999999999
Q ss_pred -HhcCHHHHHHHHHHHHHHH
Q 002535 510 -KNLMALETIEGYAMLLENV 528 (911)
Q Consensus 510 -e~Fs~e~ia~~y~~Lye~v 528 (911)
+..+.+.+..-+..++.+.
T Consensus 299 ~~~L~~~~~~~Y~~~LL~eY 318 (395)
T PF05686_consen 299 REYLTMEDVYCYWRRLLLEY 318 (395)
T ss_pred HHHhhhhHHHHHHHHHHHHH
Confidence 5577777777777766553
No 209
>PTZ00254 40S ribosomal protein SA; Provisional
Probab=41.80 E-value=1.8e+02 Score=31.83 Aligned_cols=104 Identities=13% Similarity=0.116 Sum_probs=54.9
Q ss_pred EEEEEeCCCCCchHHHHHHHHHHcCCCCccEEEcc-c-cccHHHHHHHcCeeEEcccCCcCCccHHHHHHHHcCCCEEe-
Q 002535 378 KVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMA-A-EGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIA- 454 (911)
Q Consensus 378 kLvIVGG~~~e~Y~~~Le~la~~lgL~~~~V~flG-~-v~dV~~~L~~ADVfVlPS~~E~qGFplvLLEAMA~G~PVIa- 454 (911)
.+++||... .....+++.++..|-.-..=+|+| . .+.+...+..=|++|+..... =...+.||-..|+|||+
T Consensus 73 ~Il~Vstr~--~~~~~V~k~A~~tg~~~i~~Rw~pGtlTN~~~~~f~~P~llIV~Dp~~---d~qAI~EA~~lnIPvIal 147 (249)
T PTZ00254 73 DVVVVSSRP--YGQRAVLKFAQYTGASAIAGRFTPGTFTNQIQKKFMEPRLLIVTDPRT---DHQAIREASYVNIPVIAL 147 (249)
T ss_pred cEEEEEcCH--HHHHHHHHHHHHhCCeEECCcccCCCCCCccccccCCCCEEEEeCCCc---chHHHHHHHHhCCCEEEE
Confidence 556667221 123566666665543320113343 1 133333344556666654333 26899999999999998
Q ss_pred cCCCccccccccCccEEEEcCCC-HHHHHHHHHHHHHc
Q 002535 455 PDLSNIRKYVDDRVNGYLFPKEN-IKALTHIILQVITN 491 (911)
Q Consensus 455 Td~gGi~EiV~dg~nGlLv~~~D-~eaLAeaI~~LLsd 491 (911)
.|.-..+++| -+.+|.+| .-.-...|..++..
T Consensus 148 ~DTds~p~~V-----Dy~IP~Ndds~~SI~li~~lLar 180 (249)
T PTZ00254 148 CDTDSPLEYV-----DIAIPCNNRGKESIALMYWLLAR 180 (249)
T ss_pred ecCCCCcccC-----ceeeCCCCchHHHHHHHHHHHHH
Confidence 3444444544 34555543 34444445555554
No 210
>TIGR03646 YtoQ_fam YtoQ family protein. Members of this family are uncharacterized proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=41.69 E-value=93 Score=30.79 Aligned_cols=102 Identities=15% Similarity=0.085 Sum_probs=53.0
Q ss_pred CCCCchHHHHHHHHHHcCCCCccEEEcccccc--------------------------------HHHHHHHcCeeEEcc-
Q 002535 385 DSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGD--------------------------------VDSVLNTADVVIYGS- 431 (911)
Q Consensus 385 ~~~e~Y~~~Le~la~~lgL~~~~V~flG~v~d--------------------------------V~~~L~~ADVfVlPS- 431 (911)
+....+++++++-+++.+|+ |.|.+++.+ ...++..||++|.--
T Consensus 8 EIHtdWRe~I~~ga~~~~L~---v~F~~pvtdH~aSD~~G~~iLG~e~~~fw~D~k~a~iNaiRT~~li~~aDvvVvrFG 84 (144)
T TIGR03646 8 EIHTDWREEIKEGAKSKNLP---IVFSGPVTDHEASDNIGEDILGKQPSNFWRDDAAASINNIRTRKLIEKADVVIALFG 84 (144)
T ss_pred cccchHHHHHHHHHHHcCCC---eEEecCCCCCcchhhhhHHHhCCCCccccccccccchhhHHHHHHHhhCCEEEEEec
Confidence 33445667777777776665 666664411 345899999998642
Q ss_pred -cCCcCCccHHHHHHHHcCCCEEecCCCccccccccCccEEEEcCCCHHHHHHHHHHHH
Q 002535 432 -FLEEQTFPEILVKALCFRKPIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVI 489 (911)
Q Consensus 432 -~~E~qGFplvLLEAMA~G~PVIaTd~gGi~EiV~dg~nGlLv~~~D~eaLAeaI~~LL 489 (911)
.+--=.-..-.--|.|.|+|.|.-.-..+..-+.+-.+.-+.-..+++...+.+..++
T Consensus 85 ekYKQWNaAfDAg~aaAlgKplI~lh~~~~~HpLKEvdaaA~avaetp~Qvv~iL~Yv~ 143 (144)
T TIGR03646 85 EKYKQWNAAFDAGYAAALGKPLIILRPEELIHPLKEVDNKAQAVVETPEQAIETLKYIL 143 (144)
T ss_pred hHHHHHHHHhhHHHHHHcCCCeEEecchhccccHHHHhHHHHHHhcCHHHHHHHHHHhh
Confidence 1100000122335789999998865433222221111111222345666666555543
No 211
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=41.67 E-value=1.2e+02 Score=35.67 Aligned_cols=72 Identities=15% Similarity=0.159 Sum_probs=44.5
Q ss_pred EEEEEeCCCCCchHHHHHHHHHHcCCCCccEEEccccccHHHHHHHcCeeEEcccCCcCCccHHHHHHHHcCCCEEecCC
Q 002535 378 KVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDL 457 (911)
Q Consensus 378 kLvIVGG~~~e~Y~~~Le~la~~lgL~~~~V~flG~v~dV~~~L~~ADVfVlPS~~E~qGFplvLLEAMA~G~PVIaTd~ 457 (911)
++.|+.-.. +..++++++++- ..... .+++.+++..+|++|..+.... + ++-..+.-+.|.+.-|.
T Consensus 207 ~I~V~nRt~-----~ra~~La~~~~~----~~~~~-~~~l~~~l~~aDiVI~aT~a~~---~-vi~~~~~~~~~~~~iDL 272 (414)
T PRK13940 207 QIMLANRTI-----EKAQKITSAFRN----ASAHY-LSELPQLIKKADIIIAAVNVLE---Y-IVTCKYVGDKPRVFIDI 272 (414)
T ss_pred EEEEECCCH-----HHHHHHHHHhcC----CeEec-HHHHHHHhccCCEEEECcCCCC---e-eECHHHhCCCCeEEEEe
Confidence 677776322 344667775431 11222 2578899999999999875542 2 22244556889888888
Q ss_pred Cccccc
Q 002535 458 SNIRKY 463 (911)
Q Consensus 458 gGi~Ei 463 (911)
+-.+++
T Consensus 273 avPRdi 278 (414)
T PRK13940 273 SIPQAL 278 (414)
T ss_pred CCCCCC
Confidence 655554
No 212
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=41.65 E-value=92 Score=31.65 Aligned_cols=42 Identities=19% Similarity=0.201 Sum_probs=32.4
Q ss_pred EEEcc--ccccHHHHHHHcCeeEEcccCCcCCccHHHHHHHHcCCCEEec
Q 002535 408 VKHMA--AEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAP 455 (911)
Q Consensus 408 V~flG--~v~dV~~~L~~ADVfVlPS~~E~qGFplvLLEAMA~G~PVIaT 455 (911)
+.+.| +...+.++++.||++|.-. -..+++|.+..|+|.|+-
T Consensus 63 l~id~y~f~psl~e~I~~AdlVIsHA------GaGS~letL~l~KPlivV 106 (170)
T KOG3349|consen 63 LTIDGYDFSPSLTEDIRSADLVISHA------GAGSCLETLRLGKPLIVV 106 (170)
T ss_pred eEEEEEecCccHHHHHhhccEEEecC------CcchHHHHHHcCCCEEEE
Confidence 44444 4588999999999999543 245899999999997653
No 213
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=41.07 E-value=2.7e+02 Score=28.74 Aligned_cols=112 Identities=15% Similarity=0.124 Sum_probs=63.7
Q ss_pred EEEEEEeCCCCCchHHHHHHHHHHcCCCCccEEEccccccHHHHHH--HcCeeEEcccCCcC--CccHHHHHHHH---cC
Q 002535 377 IKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLN--TADVVIYGSFLEEQ--TFPEILVKALC---FR 449 (911)
Q Consensus 377 vkLvIVGG~~~e~Y~~~Le~la~~lgL~~~~V~flG~v~dV~~~L~--~ADVfVlPS~~E~q--GFplvLLEAMA---~G 449 (911)
++++|+.... .....++......+.-. .+.......+....+. ..|++++-...... .-|..+++.+. .+
T Consensus 4 ~~Ilivdd~~--~~~~~l~~~L~~~~~~~-~v~~~~~~~~~~~~~~~~~~DlvllD~~l~~~~~~~g~~~~~~l~~~~~~ 80 (216)
T PRK10840 4 MNVIIADDHP--IVLFGIRKSLEQIEWVN-VVGEFEDSTALINNLPKLDAHVLITDLSMPGDKYGDGITLIKYIKRHFPS 80 (216)
T ss_pred eEEEEECCcH--HHHHHHHHHHhcCCCCE-EEEEECCHHHHHHHHHhCCCCEEEEeCcCCCCCCCCHHHHHHHHHHHCCC
Confidence 6777776322 12234445444222111 1222223344545444 36888876543310 13667777764 34
Q ss_pred CCEEe-cCCCc---cccccccCccEEEEcCCCHHHHHHHHHHHHHc
Q 002535 450 KPIIA-PDLSN---IRKYVDDRVNGYLFPKENIKALTHIILQVITN 491 (911)
Q Consensus 450 ~PVIa-Td~gG---i~EiV~dg~nGlLv~~~D~eaLAeaI~~LLsd 491 (911)
+|||. +.... ..+.+..|..|++..+.++++|.++|..+++.
T Consensus 81 ~~iIvls~~~~~~~~~~a~~~Ga~~yl~K~~~~~~l~~ai~~v~~g 126 (216)
T PRK10840 81 LSIIVLTMNNNPAILSAVLDLDIEGIVLKQGAPTDLPKALAALQKG 126 (216)
T ss_pred CcEEEEEecCCHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHHHCC
Confidence 56665 33322 23446778899999999999999999998875
No 214
>PF10093 DUF2331: Uncharacterized protein conserved in bacteria (DUF2331); InterPro: IPR016633 This entry describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=40.52 E-value=2.1e+02 Score=33.30 Aligned_cols=108 Identities=18% Similarity=0.215 Sum_probs=70.1
Q ss_pred hHHHHHhhCCC---CCCeEEEEEEecccccccccc-HHHHHHHHHHhhhhcccCCCCCCCEEEEEEeCCCCCchHHHHHH
Q 002535 321 NDTVRVKMGFK---PDDLVIAIVGTQFMYRGLWLE-HALILRALLPLFSEVSVENESNSPIKVMILSGDSTSNYSVVIEA 396 (911)
Q Consensus 321 k~~lR~~lgi~---~d~~vIL~VGsrl~~~KGiKg-~dlLLeAl~~L~~~~p~~~~~~~~vkLvIVGG~~~e~Y~~~Le~ 396 (911)
+..+...+|++ ++...|..++ |. .. +..+++++.... ..+.++|.+|... ..+++
T Consensus 168 ~~~~~~~lg~~~~~~~~~~vslF~----Ye---~~~l~~ll~~~~~~~----------~pv~llvp~g~~~----~~~~~ 226 (374)
T PF10093_consen 168 RAAFLRRLGLPEPEPGALRVSLFC----YE---NAALASLLDAWAASP----------KPVHLLVPEGRAL----NSLAA 226 (374)
T ss_pred HHHHHHHcCCCCCCCCCeEEEEEe----CC---chHHHHHHHHHhcCC----------CCeEEEecCCccH----HHHHH
Confidence 55666778875 5666776666 43 22 555566665332 2389999888655 33432
Q ss_pred HHH--------HcCCCCccEEEcccc--ccHHHHHHHcCeeEEcccCCcCCccHHHHHHHHcCCCEEecC
Q 002535 397 IAH--------NLHYPLGVVKHMAAE--GDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPD 456 (911)
Q Consensus 397 la~--------~lgL~~~~V~flG~v--~dV~~~L~~ADVfVlPS~~E~qGFplvLLEAMA~G~PVIaTd 456 (911)
... .....+-.+..+.++ ++...+|..||+-+.-. |. +++-|.-+|+|.|=.-
T Consensus 227 ~~~~~~~~~g~~~~~g~l~l~~lPF~~Q~~yD~LLw~cD~NfVRG--ED-----SfVRAqwAgkPFvWhI 289 (374)
T PF10093_consen 227 WLGDALLQAGDSWQRGNLTLHVLPFVPQDDYDRLLWACDFNFVRG--ED-----SFVRAQWAGKPFVWHI 289 (374)
T ss_pred HhccccccCccccccCCeEEEECCCCCHHHHHHHHHhCccceEec--ch-----HHHHHHHhCCCceEec
Confidence 221 111122257777776 78999999999988655 54 7889999999988653
No 215
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=39.51 E-value=1e+02 Score=36.99 Aligned_cols=86 Identities=13% Similarity=0.140 Sum_probs=50.6
Q ss_pred EEEEEeCCCCCChH-------HHHHHHHHHHHHHCC-CeEEEEEeCCCcchhhhhhcCceEEEeccchhHHHhhhhcCcc
Q 002535 146 QLALVFPDLLIDPQ-------QLQMVTIAIALREIG-YAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYD 217 (911)
Q Consensus 146 rIalI~~~L~~GGa-------e~~v~~LAk~L~~~G-yeV~V~t~~~g~~~~~~~~~gi~v~~l~~~~~l~~lI~~~kpD 217 (911)
||++|.|+...+|. ..-+..+|..|.+.| |+|.++-....+.. ...+...+...+||
T Consensus 1 ~illi~P~~~~~~~~~~~~~pPlgl~~lAa~L~~~G~~~V~iiD~~~~~~~---------------~~~~~~~l~~~~pd 65 (497)
T TIGR02026 1 RILILNPNYHAGGAEIAGQWPPLWVAYIGGALLDAGYHDVTFLDAMTGPLT---------------DEKLVERLRAHCPD 65 (497)
T ss_pred CeEEEcCCCCccccccCCCcCCHHHHHHHHHHHhcCCcceEEecccccCCC---------------HHHHHHHHHhcCcC
Confidence 57788887765554 335678888899999 89999865432211 12234456667889
Q ss_pred EEEEcCcchhH----HHHHHhhCCCCCCCEEEE
Q 002535 218 GILVNSLEAKV----VISNIMQEPFKSLPLVWT 246 (911)
Q Consensus 218 IIhvhs~~~~~----~ia~L~~~~~~giPvV~t 246 (911)
+|-+....... -++..+.+..+++++|+-
T Consensus 66 vVgis~~t~~~~~a~~~~~~~k~~~P~~~iV~G 98 (497)
T TIGR02026 66 LVLITAITPAIYIACETLKFARERLPNAIIVLG 98 (497)
T ss_pred EEEEecCcccHHHHHHHHHHHHHHCCCCEEEEc
Confidence 88776543311 112223333456666653
No 216
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=39.41 E-value=1.3e+02 Score=33.56 Aligned_cols=102 Identities=8% Similarity=0.047 Sum_probs=60.0
Q ss_pred CCCCCCEEEEEeCCCCCChHHHHHHHHHHHHHH--CCCeEEEEEeCCCcchhhhhhcCceEEEeccc--------hhHHH
Q 002535 140 FGYRKPQLALVFPDLLIDPQQLQMVTIAIALRE--IGYAIQVYSLEDGRAHEVWRNIGVPVAILQTG--------REKAS 209 (911)
Q Consensus 140 ~~~rkprIalI~~~L~~GGae~~v~~LAk~L~~--~GyeV~V~t~~~g~~~~~~~~~gi~v~~l~~~--------~~l~~ 209 (911)
+..+++||++...+ +|.- +..+..+.+. .+++|.++..+..+.....+..|+++..++.. ..+..
T Consensus 85 ~~~~~~ri~vl~Sg---~g~n--l~al~~~~~~~~~~~~i~~visn~~~~~~lA~~~gIp~~~~~~~~~~~~~~~~~~~~ 159 (286)
T PRK13011 85 DPAARPKVLIMVSK---FDHC--LNDLLYRWRIGELPMDIVGVVSNHPDLEPLAAWHGIPFHHFPITPDTKPQQEAQVLD 159 (286)
T ss_pred ecccCceEEEEEcC---Cccc--HHHHHHHHHcCCCCcEEEEEEECCccHHHHHHHhCCCEEEeCCCcCchhhhHHHHHH
Confidence 45667899988776 2332 2334444433 35787776655555555577889997765321 12344
Q ss_pred hhhhcCccEEEEcCcchhHHHHHHhhCCCCCCCEEEEEcCc
Q 002535 210 FVNWLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEG 250 (911)
Q Consensus 210 lI~~~kpDIIhvhs~~~~~~ia~L~~~~~~giPvV~tiH~~ 250 (911)
.++..++|+|++...... .-..++.. +. .-++.+|..
T Consensus 160 ~l~~~~~Dlivlagy~~i-l~~~~l~~-~~--~~iiNiHpS 196 (286)
T PRK13011 160 VVEESGAELVVLARYMQV-LSPELCRK-LA--GRAINIHHS 196 (286)
T ss_pred HHHHhCcCEEEEeChhhh-CCHHHHhh-cc--CCeEEeccc
Confidence 577789999998876552 22233322 21 137789954
No 217
>TIGR02896 spore_III_AF stage III sporulation protein AF. This family represents the stage III sporulation protein AF of the bacterial endospore formation program, which exists in some but not all members of the Firmicutes (formerly called low-GC Gram-positives). The C-terminal region of this protein is poorly conserved, so only the N-terminal region, which includes two predicted transmembrane domains, is included in the seed alignment.
Probab=39.04 E-value=30 Score=32.91 Aligned_cols=25 Identities=24% Similarity=0.703 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCce
Q 002535 50 LLWICTVAVFLFFVVIFQLFLPGSV 74 (911)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (911)
-+||-++++|+.++.++-|.||++-
T Consensus 4 ~~Wv~~i~~~~il~t~~~~llP~~~ 28 (106)
T TIGR02896 4 KEWVTNIIVLILLATILEMLLPNSS 28 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCcc
Confidence 3799999999999999999999985
No 218
>PF03401 TctC: Tripartite tricarboxylate transporter family receptor; InterPro: IPR005064 Bordetella pertussis, the causative agent of human whooping cough (pertussis), is an obligate human pathogen with diverse high-affinity transport systems for the assimilation of iron, a biometal that is essential for growth []. Periplasmic binding proteins of a new family, particularly well represented in this organism (and more generally in beta-proteobacteria), have been called Bug receptors []. They adopt a characteristic Venus flytrap fold with two globular domains bisected by a ligand-binding cleft. The family is specific for carboxylated solutes, with a characteristic mode of binding involving two highly conserved beta strand-beta turn-alpha helix motifs originating from each domain. These two motifs form hydrogen bonds with a carboxylate group of the ligand, both directly and via conserved water molecules, and have thus been termed the carboxylate pincers. Domain 1 recognises the ligand and the carboxylate group serves as an initial anchoring point. Domain 2 discriminates between productively and non-productively bound ligands as proper interactions with this domain is needed for the of the closed conformation []. BugE has a glutamate bound ligand. No charged residues are involved in glutamate binding by BugE, unlike what has been described for all glutamate receptors reported so far. The Bug architecture is highly conserved despite limited sequence identity [].; GO: 0030288 outer membrane-bounded periplasmic space; PDB: 2QPQ_C 2DVZ_A 2F5X_A.
Probab=38.47 E-value=3e+02 Score=30.23 Aligned_cols=143 Identities=14% Similarity=0.159 Sum_probs=65.2
Q ss_pred eEEEEEEeccccccccccHHHHHHHHHHhhhhcccCCCCCCCEEEEEEe-CCCCCchHHHHHHHHHHcCCCCccEEEccc
Q 002535 335 LVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAA 413 (911)
Q Consensus 335 ~vIL~VGsrl~~~KGiKg~dlLLeAl~~L~~~~p~~~~~~~~vkLvIVG-G~~~e~Y~~~Le~la~~lgL~~~~V~flG~ 413 (911)
..+++++...+. +.++.++++++. .|. ++.+.+ |... ...-....+.++.|++-..|-+-|.
T Consensus 79 ~~vl~v~~dsp~----~t~~eli~~ak~----~p~--------~~~~g~~g~g~-~~hl~~~~l~~~~G~~~~~Vpy~G~ 141 (274)
T PF03401_consen 79 PNVLVVRADSPY----KTLEELIEYAKA----NPG--------KLTFGSSGPGS-SDHLAAALLAKAAGIKFTHVPYDGG 141 (274)
T ss_dssp EEEEEEETTSS-----SSHHHHHHHHHC----SCC--------C-EEEESSTTS-HHHHHHHHHHHHHT---EEEE-SSH
T ss_pred ceEEEEeCCCcc----ccHHHHHHHHHh----CCC--------CeEEEecCCCc-hHHHHHHHHHHHhCCceEEEEeCCc
Confidence 356777644334 888777777753 333 333333 3221 1123445567777876434554443
Q ss_pred cccHHHHHH-HcCeeEEcccCCcCCccHHHHHHHHcCC--CEEe---------cCCCc-----cccccccCccEEEEcCC
Q 002535 414 EGDVDSVLN-TADVVIYGSFLEEQTFPEILVKALCFRK--PIIA---------PDLSN-----IRKYVDDRVNGYLFPKE 476 (911)
Q Consensus 414 v~dV~~~L~-~ADVfVlPS~~E~qGFplvLLEAMA~G~--PVIa---------Td~gG-----i~EiV~dg~nGlLv~~~ 476 (911)
-+-+..++. ..|+.+... .........|. |+.+ ++++. .+++.-..-.|+++|++
T Consensus 142 ~~~~~allgG~vd~~~~~~--------~~~~~~~~~G~~k~Lav~~~~r~~~~pdvPT~~E~G~~d~~~~~~~g~~~p~g 213 (274)
T PF03401_consen 142 AEALTALLGGHVDAAFGSP--------GEALPYVEAGDLKPLAVFSDERSPALPDVPTFKEQGYPDIVFGSWRGLFAPKG 213 (274)
T ss_dssp HHHHHHHHTTSSSEEEEEH--------HHHHHHHHTTSEEEEEECSSS-BTTCTTS-BTTTTT-TTG--EEEEEEEEETT
T ss_pred cHHHHHHhCCeeeEEeecH--------HHHHHHHhCCCceEEEEecCccccccCCCCCHHHhCccceeeeeeeeeecCCC
Confidence 344444444 334443221 12223333443 1111 12222 22333344578999998
Q ss_pred CHHH----HHHHHHHHHHcCCCcHHHHHHHHHH
Q 002535 477 NIKA----LTHIILQVITNGKISPFARNIASIG 505 (911)
Q Consensus 477 D~ea----LAeaI~~LLsd~~~p~~~~~mg~~a 505 (911)
.+++ |.+++.+.+++ |+..+.+.+.+
T Consensus 214 tp~~~~~~l~~a~~~~~~~---pe~~~~~~~~g 243 (274)
T PF03401_consen 214 TPDEIVDKLADAIKKALED---PEFQEFLEKMG 243 (274)
T ss_dssp S-HHHHHHHHHHHHHHHT----HHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHhCC---HHHHHHHHHCC
Confidence 8766 45555666667 66666555443
No 219
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=38.43 E-value=2.8e+02 Score=32.00 Aligned_cols=124 Identities=15% Similarity=0.208 Sum_probs=76.4
Q ss_pred CCeEEEEEEeccccccccccHHHHHHHHHHhhhhcccCCCCCCCEEEEEEe--CCCCCch---------HHHHHHHHHHc
Q 002535 333 DDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILS--GDSTSNY---------SVVIEAIAHNL 401 (911)
Q Consensus 333 d~~vIL~VGsrl~~~KGiKg~dlLLeAl~~L~~~~p~~~~~~~~vkLvIVG--G~~~e~Y---------~~~Le~la~~l 401 (911)
+++.+++.| ...- -..+.+++.++.+++.. ++++--| -+....| .+.+++..++.
T Consensus 99 ~~~l~vIAG-PCsI----Es~eq~l~~A~~lk~~g---------~~~~r~g~~kpRtsp~sf~G~g~~gl~~L~~~~~e~ 164 (352)
T PRK13396 99 NHPVVVVAG-PCSV----ENEEMIVETAKRVKAAG---------AKFLRGGAYKPRTSPYAFQGHGESALELLAAAREAT 164 (352)
T ss_pred CCeEEEEEe-CCcc----cCHHHHHHHHHHHHHcC---------CCEEEeeeecCCCCCcccCCchHHHHHHHHHHHHHc
Confidence 344556666 6655 56677888888887764 4555544 2222222 34566677788
Q ss_pred CCCCccEEEccccccHHHHHHHcCeeEEcccCCcCCccHHHHHHH-HcCCCEEecCCCccccccccCccEEEEcCCCHHH
Q 002535 402 HYPLGVVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKAL-CFRKPIIAPDLSNIRKYVDDRVNGYLFPKENIKA 480 (911)
Q Consensus 402 gL~~~~V~flG~v~dV~~~L~~ADVfVlPS~~E~qGFplvLLEAM-A~G~PVIaTd~gGi~EiV~dg~nGlLv~~~D~ea 480 (911)
|++- +.-.=..+++..+...+|++=.+|+.-. .|+ +++++ ..|+||+...-- ..++++
T Consensus 165 Gl~~--~tev~d~~~v~~~~~~~d~lqIga~~~~-n~~--LL~~va~t~kPVllk~G~----------------~~t~ee 223 (352)
T PRK13396 165 GLGI--ITEVMDAADLEKIAEVADVIQVGARNMQ-NFS--LLKKVGAQDKPVLLKRGM----------------AATIDE 223 (352)
T ss_pred CCcE--EEeeCCHHHHHHHHhhCCeEEECccccc-CHH--HHHHHHccCCeEEEeCCC----------------CCCHHH
Confidence 8874 3332233566666667999999997653 344 45555 679999877421 125667
Q ss_pred HHHHHHHHHHc
Q 002535 481 LTHIILQVITN 491 (911)
Q Consensus 481 LAeaI~~LLsd 491 (911)
+..++..+.+.
T Consensus 224 ~~~A~e~i~~~ 234 (352)
T PRK13396 224 WLMAAEYILAA 234 (352)
T ss_pred HHHHHHHHHHc
Confidence 77777766654
No 220
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=37.42 E-value=55 Score=33.08 Aligned_cols=43 Identities=14% Similarity=0.128 Sum_probs=29.0
Q ss_pred hHHHhhhhcCccEEEEcCcchhHH-HHHHhhCCCC-CCCEEEEEc
Q 002535 206 EKASFVNWLNYDGILVNSLEAKVV-ISNIMQEPFK-SLPLVWTIH 248 (911)
Q Consensus 206 ~l~~lI~~~kpDIIhvhs~~~~~~-ia~L~~~~~~-giPvV~tiH 248 (911)
.+..++++.+||+|++.++..... +..+..+... ++|++..+-
T Consensus 80 ~l~~~l~~~~PD~IIsThp~~~~~~l~~lk~~~~~~~~p~~tvvT 124 (169)
T PF06925_consen 80 RLIRLLREFQPDLIISTHPFPAQVPLSRLKRRGRLPNIPVVTVVT 124 (169)
T ss_pred HHHHHHhhcCCCEEEECCcchhhhHHHHHHHhhcccCCcEEEEEc
Confidence 455668889999999999987555 5545444333 677664444
No 221
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=37.01 E-value=3.9e+02 Score=30.71 Aligned_cols=130 Identities=12% Similarity=0.155 Sum_probs=66.0
Q ss_pred EEEEEEe-CCCCCchHHHHHHHHHHcCCCCccEEEcccc------ccHH----HHHHHcCeeEEccc-CCcCCccHHHHH
Q 002535 377 IKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAAE------GDVD----SVLNTADVVIYGSF-LEEQTFPEILVK 444 (911)
Q Consensus 377 vkLvIVG-G~~~e~Y~~~Le~la~~lgL~~~~V~flG~v------~dV~----~~L~~ADVfVlPS~-~E~qGFplvLLE 444 (911)
-+++++| |... ...-+...+.|..+ |.+.... +++. .+...+|+++..|. ... -.|....|
T Consensus 175 k~vLvIGaGem~----~l~a~~L~~~g~~~--i~v~nRt~~~~~~~~~~~~~~~~~~~~DvVIs~t~~Tas-~~p~i~~~ 247 (338)
T PRK00676 175 ASLLFIGYSEIN----RKVAYYLQRQGYSR--ITFCSRQQLTLPYRTVVREELSFQDPYDVIFFGSSESAY-AFPHLSWE 247 (338)
T ss_pred CEEEEEcccHHH----HHHHHHHHHcCCCE--EEEEcCCccccchhhhhhhhhhcccCCCEEEEcCCcCCC-CCceeeHH
Confidence 6999999 8765 22223333456654 7776643 2332 56779999998631 111 14655566
Q ss_pred HHHcCCCEEecCCCccccc--cccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHH
Q 002535 445 ALCFRKPIIAPDLSNIRKY--VDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSVKNLMALETIEGYA 522 (911)
Q Consensus 445 AMA~G~PVIaTd~gGi~Ei--V~dg~nGlLv~~~D~eaLAeaI~~LLsd~~~p~~~~~mg~~ar~~ae~Fs~e~ia~~y~ 522 (911)
.+.--.+-+.-|.+-.+++ +....+-.+++ .++|.+.+.+-+.. +++....+...+ ++.+.+|-
T Consensus 248 ~~~~~~~r~~iDLAvPRdId~v~~~~~v~Ly~---iDdL~~i~~~n~~~------R~~~~~~ae~iI-----~~~~~~~~ 313 (338)
T PRK00676 248 SLADIPDRIVFDFNVPRTFPWSETPFPHRYLD---MDFISEWVQKHLQC------RKEVNNKHKLSL-----REAAYKQW 313 (338)
T ss_pred HHhhccCcEEEEecCCCCCccccccCCcEEEE---hHHHHHHHHHHHHH------HHHHHHHHHHHH-----HHHHHHHH
Confidence 5543222344555544443 22223344554 56655555444332 333334444443 34445555
Q ss_pred HHHHH
Q 002535 523 MLLEN 527 (911)
Q Consensus 523 ~Lye~ 527 (911)
+.|++
T Consensus 314 ~~~~~ 318 (338)
T PRK00676 314 ESYEK 318 (338)
T ss_pred HHHHH
Confidence 55554
No 222
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=36.26 E-value=54 Score=30.75 Aligned_cols=74 Identities=14% Similarity=0.187 Sum_probs=46.4
Q ss_pred EEEe-CCCCCchHHHHHHHHHHcCCCCccEEEccccccHHHHHHHcCeeEEcccCCcCCccHHHHHHHHcCCCEEecC
Q 002535 380 MILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPD 456 (911)
Q Consensus 380 vIVG-G~~~e~Y~~~Le~la~~lgL~~~~V~flG~v~dV~~~L~~ADVfVlPS~~E~qGFplvLLEAMA~G~PVIaTd 456 (911)
+++| |-...-..+.+++.+++.|++- .|. -....++.+.+..+|++++....-. -+.-.--.+-..|+||..-+
T Consensus 5 l~C~~GaSSs~la~km~~~a~~~gi~~-~i~-a~~~~e~~~~~~~~Dvill~PQv~~-~~~~i~~~~~~~~ipv~~I~ 79 (99)
T cd05565 5 VLCAGGGTSGLLANALNKGAKERGVPL-EAA-AGAYGSHYDMIPDYDLVILAPQMAS-YYDELKKDTDRLGIKLVTTT 79 (99)
T ss_pred EECCCCCCHHHHHHHHHHHHHHCCCcE-EEE-EeeHHHHHHhccCCCEEEEcChHHH-HHHHHHHHhhhcCCCEEEeC
Confidence 3445 7555445678888999888863 332 2234788899999999888763321 01222223445688998766
No 223
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=36.02 E-value=1.8e+02 Score=31.60 Aligned_cols=80 Identities=16% Similarity=0.214 Sum_probs=54.4
Q ss_pred EEEEEEe--C--CCCCchHHHHHHHHHHcCCCCccEEEccccccHHHHHHHcCeeEEcc---------cCCcCCccHHHH
Q 002535 377 IKVMILS--G--DSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNTADVVIYGS---------FLEEQTFPEILV 443 (911)
Q Consensus 377 vkLvIVG--G--~~~e~Y~~~Le~la~~lgL~~~~V~flG~v~dV~~~L~~ADVfVlPS---------~~E~qGFplvLL 443 (911)
-++.++- + .+.+.|....++...++|.+ +..+-..++..+.+..||++.++- ..+. |+--.+-
T Consensus 32 ~~v~fIPtAs~~~~~~~y~~~~~~af~~lG~~---v~~l~~~~d~~~~l~~ad~I~v~GGnt~~l~~~l~~~-gl~~~l~ 107 (233)
T PRK05282 32 RKAVFIPYAGVTQSWDDYTAKVAEALAPLGIE---VTGIHRVADPVAAIENAEAIFVGGGNTFQLLKQLYER-GLLAPIR 107 (233)
T ss_pred CeEEEECCCCCCCCHHHHHHHHHHHHHHCCCE---EEEeccchhhHHHHhcCCEEEECCccHHHHHHHHHHC-CcHHHHH
Confidence 3666666 3 23345666677777777775 333333356778899999888874 1222 4566788
Q ss_pred HHHHcCCCEEecCCCcc
Q 002535 444 KALCFRKPIIAPDLSNI 460 (911)
Q Consensus 444 EAMA~G~PVIaTd~gGi 460 (911)
|+...|+|++.+..|.+
T Consensus 108 ~~~~~G~~~~G~SAGAi 124 (233)
T PRK05282 108 EAVKNGTPYIGWSAGAN 124 (233)
T ss_pred HHHHCCCEEEEECHHHH
Confidence 99999999999988764
No 224
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=35.30 E-value=1.1e+02 Score=36.23 Aligned_cols=81 Identities=16% Similarity=0.207 Sum_probs=52.5
Q ss_pred CCCCEEEEEeCCCCCChHHHHHHHHHHHHHHCCCeEEEEEeCCC------cchhhhhhcCceEEEeccchhHH-------
Q 002535 142 YRKPQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDG------RAHEVWRNIGVPVAILQTGREKA------- 208 (911)
Q Consensus 142 ~rkprIalI~~~L~~GGae~~v~~LAk~L~~~GyeV~V~t~~~g------~~~~~~~~~gi~v~~l~~~~~l~------- 208 (911)
.++|.+.+ .-+|..+|-...+-.||.+|.+.|+.|-+++...- ++....+..+++++.........
T Consensus 97 ~~~P~vIm-mvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al 175 (451)
T COG0541 97 KKPPTVIL-MVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAAL 175 (451)
T ss_pred CCCCeEEE-EEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHH
Confidence 44555544 44577788889999999999999999999987542 13333456677766553222222
Q ss_pred HhhhhcCccEEEEcC
Q 002535 209 SFVNWLNYDGILVNS 223 (911)
Q Consensus 209 ~lI~~~kpDIIhvhs 223 (911)
...+...+|+|++.+
T Consensus 176 ~~ak~~~~DvvIvDT 190 (451)
T COG0541 176 EKAKEEGYDVVIVDT 190 (451)
T ss_pred HHHHHcCCCEEEEeC
Confidence 123345677777765
No 225
>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=34.72 E-value=2e+02 Score=30.42 Aligned_cols=37 Identities=22% Similarity=0.134 Sum_probs=29.8
Q ss_pred EEEEEeCCCCCChHHHHHHHHHHHHHHCCCeEEEEEe
Q 002535 146 QLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSL 182 (911)
Q Consensus 146 rIalI~~~L~~GGae~~v~~LAk~L~~~GyeV~V~t~ 182 (911)
||+++.+++...-....+..+.+.+.+.||++.++..
T Consensus 1 ~Igvi~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~ 37 (273)
T cd06310 1 KIALVPKGTTSDFWQAVKAGAEAAAKELGVKVTFQGP 37 (273)
T ss_pred CeEEEecCCCcHHHHHHHHHHHHHHHHcCCEEEEecC
Confidence 5788888876666677777888889999999988753
No 226
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=34.67 E-value=1.9e+02 Score=26.82 Aligned_cols=66 Identities=24% Similarity=0.288 Sum_probs=44.3
Q ss_pred EEEEEEeCCCCCchHHHHHHHHHHcCCCCccEEEccccccHHHHHH--HcCeeEEcccCCcCCccHHHHHHHHcCCCEEe
Q 002535 377 IKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLN--TADVVIYGSFLEEQTFPEILVKALCFRKPIIA 454 (911)
Q Consensus 377 vkLvIVGG~~~e~Y~~~Le~la~~lgL~~~~V~flG~v~dV~~~L~--~ADVfVlPS~~E~qGFplvLLEAMA~G~PVIa 454 (911)
++++-+-.+.. +..++.+++.+++. .+++.+++. ..|+++..+.... -.-.+.+|+..|++|++
T Consensus 26 ~~v~~v~d~~~----~~~~~~~~~~~~~~--------~~~~~~ll~~~~~D~V~I~tp~~~--h~~~~~~~l~~g~~v~~ 91 (120)
T PF01408_consen 26 FEVVAVCDPDP----ERAEAFAEKYGIPV--------YTDLEELLADEDVDAVIIATPPSS--HAEIAKKALEAGKHVLV 91 (120)
T ss_dssp EEEEEEECSSH----HHHHHHHHHTTSEE--------ESSHHHHHHHTTESEEEEESSGGG--HHHHHHHHHHTTSEEEE
T ss_pred cEEEEEEeCCH----HHHHHHHHHhcccc--------hhHHHHHHHhhcCCEEEEecCCcc--hHHHHHHHHHcCCEEEE
Confidence 55553335443 56667777666541 246778888 6888887764442 46688999999999887
Q ss_pred cC
Q 002535 455 PD 456 (911)
Q Consensus 455 Td 456 (911)
-.
T Consensus 92 EK 93 (120)
T PF01408_consen 92 EK 93 (120)
T ss_dssp ES
T ss_pred Ec
Confidence 54
No 227
>cd06315 PBP1_ABC_sugar_binding_like_6 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=34.56 E-value=2.3e+02 Score=30.45 Aligned_cols=86 Identities=16% Similarity=0.132 Sum_probs=52.3
Q ss_pred EEEEEeCCCCCChHHHHHHHHHHHHHHCCCeEEEEEeCCCcchhhhhhcCceEEEeccchhHHHhhhhcCccEEEEcCcc
Q 002535 146 QLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVNSLE 225 (911)
Q Consensus 146 rIalI~~~L~~GGae~~v~~LAk~L~~~GyeV~V~t~~~g~~~~~~~~~gi~v~~l~~~~~l~~lI~~~kpDIIhvhs~~ 225 (911)
+|+++.+++.......++..+.+.+.+.||++.+.....+... .. .....+...++|.|++....
T Consensus 2 ~ig~i~~~~~~~~~~~~~~gi~~~a~~~gy~~~~~~~~~~~~~-~~--------------~~i~~l~~~~vdgiil~~~~ 66 (280)
T cd06315 2 NIIFVASDLKNGGILGVGEGVREAAKAIGWNLRILDGRGSEAG-QA--------------AALNQAIALKPDGIVLGGVD 66 (280)
T ss_pred eEEEEecccCCcHHHHHHHHHHHHHHHcCcEEEEECCCCCHHH-HH--------------HHHHHHHHcCCCEEEEcCCC
Confidence 5788889888777778888899999999999888654322111 00 11223455789998887653
Q ss_pred hhHHHHHHhhCCCCCCCEEEE
Q 002535 226 AKVVISNIMQEPFKSLPLVWT 246 (911)
Q Consensus 226 ~~~~ia~L~~~~~~giPvV~t 246 (911)
.......+......++|+|..
T Consensus 67 ~~~~~~~~~~~~~~~iPvV~~ 87 (280)
T cd06315 67 AAELQAELELAQKAGIPVVGW 87 (280)
T ss_pred HHHHHHHHHHHHHCCCCEEEe
Confidence 211111111111357898754
No 228
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=34.23 E-value=1.6e+02 Score=31.41 Aligned_cols=84 Identities=7% Similarity=0.046 Sum_probs=50.8
Q ss_pred EEEEEeCCCCCChHHHHHHHHHHHHHHCCCeEEEEEeCCCcchhhhhhcCceEEEeccchhHHHhhhhcCccEEEEcCcc
Q 002535 146 QLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVNSLE 225 (911)
Q Consensus 146 rIalI~~~L~~GGae~~v~~LAk~L~~~GyeV~V~t~~~g~~~~~~~~~gi~v~~l~~~~~l~~lI~~~kpDIIhvhs~~ 225 (911)
+|+++.+++...-...++..+.+.+.+.||++.+......+ .... .....+...++|.|++....
T Consensus 1 ~igv~~~~~~~~~~~~~~~~i~~~~~~~g~~v~~~~~~~~~-~~~~--------------~~i~~~~~~~~Dgiii~~~~ 65 (282)
T cd06318 1 KIGFSQYTLNSPFFAALTEAAKAHAKALGYELISTDAQGDL-TKQI--------------ADVEDLLTRGVNVLIINPVD 65 (282)
T ss_pred CeeEEeccccCHHHHHHHHHHHHHHHHcCCEEEEEcCCCCH-HHHH--------------HHHHHHHHcCCCEEEEecCC
Confidence 47888888776667778888999999999999876543221 1111 11122344679988876543
Q ss_pred hh---HHHHHHhhCCCCCCCEEEEE
Q 002535 226 AK---VVISNIMQEPFKSLPLVWTI 247 (911)
Q Consensus 226 ~~---~~ia~L~~~~~~giPvV~ti 247 (911)
.. ..+..+ ...++|+|..-
T Consensus 66 ~~~~~~~i~~~---~~~~iPvV~~~ 87 (282)
T cd06318 66 PEGLVPAVAAA---KAAGVPVVVVD 87 (282)
T ss_pred ccchHHHHHHH---HHCCCCEEEec
Confidence 31 112222 24578987653
No 229
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=34.22 E-value=2e+02 Score=30.32 Aligned_cols=86 Identities=15% Similarity=0.114 Sum_probs=49.6
Q ss_pred EEEEEeCCCCCChHHHHHHHHHHHHHHCCCeEEEEEeCCCcchhhhhhcCceEEEeccchhHHHhhhhcCccEEEEcCcc
Q 002535 146 QLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVNSLE 225 (911)
Q Consensus 146 rIalI~~~L~~GGae~~v~~LAk~L~~~GyeV~V~t~~~g~~~~~~~~~gi~v~~l~~~~~l~~lI~~~kpDIIhvhs~~ 225 (911)
+|+++.+.....-....+..+.+.+++.||++.++....++ .... ..+..++. .++|.|++....
T Consensus 1 ~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~-~~~~-------------~~l~~~~~-~~vdgii~~~~~ 65 (273)
T cd06305 1 RIAVVRYGGSGDFDQAYLAGTKAEAEALGGDLRVYDAGGDD-AKQA-------------DQIDQAIA-QKVDAIIIQHGR 65 (273)
T ss_pred CeEEEeecCCCcHHHHHHHHHHHHHHHcCCEEEEECCCCCH-HHHH-------------HHHHHHHH-cCCCEEEEecCC
Confidence 47788887766666677888889999999999886532211 1100 11233344 479998886543
Q ss_pred hhHHHHHHhhCCCCCCCEEEE
Q 002535 226 AKVVISNIMQEPFKSLPLVWT 246 (911)
Q Consensus 226 ~~~~ia~L~~~~~~giPvV~t 246 (911)
.......+......++|+|..
T Consensus 66 ~~~~~~~i~~~~~~~ipvV~~ 86 (273)
T cd06305 66 AEVLKPWVKRALDAGIPVVAF 86 (273)
T ss_pred hhhhHHHHHHHHHcCCCEEEe
Confidence 211111111112457887754
No 230
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=34.21 E-value=1.5e+02 Score=30.62 Aligned_cols=29 Identities=17% Similarity=0.213 Sum_probs=20.3
Q ss_pred cCccEEEEcCcchhHHHHHHhhCCCCCCCEEE
Q 002535 214 LNYDGILVNSLEAKVVISNIMQEPFKSLPLVW 245 (911)
Q Consensus 214 ~kpDIIhvhs~~~~~~ia~L~~~~~~giPvV~ 245 (911)
..||+|+.|+-++-+++.. ..+.+.|+|.
T Consensus 65 f~PDvI~~H~GWGe~Lflk---dv~P~a~li~ 93 (171)
T PF12000_consen 65 FVPDVIIAHPGWGETLFLK---DVFPDAPLIG 93 (171)
T ss_pred CCCCEEEEcCCcchhhhHH---HhCCCCcEEE
Confidence 5789999999888533333 3467788773
No 231
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=33.96 E-value=2.6e+02 Score=30.61 Aligned_cols=85 Identities=19% Similarity=0.269 Sum_probs=58.6
Q ss_pred CEEEEEeCCCCCChHHHHHHHHHHHHHHCCCeEEEEEeCCCcchhhhhhcCceEEEeccchhHHHhhhhcCccEEEEcCc
Q 002535 145 PQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVNSL 224 (911)
Q Consensus 145 prIalI~~~L~~GGae~~v~~LAk~L~~~GyeV~V~t~~~g~~~~~~~~~gi~v~~l~~~~~l~~lI~~~kpDIIhvhs~ 224 (911)
..|.+|+|++..-=-...+..+.+.+.+.||.+.++...+.+... + ....+...++|.+++.+.
T Consensus 2 ~~IGvivp~~~npff~~ii~gIe~~a~~~Gy~l~l~~t~~~~~~e--~--------------~i~~l~~~~vDGiI~~s~ 65 (279)
T PF00532_consen 2 KTIGVIVPDISNPFFAEIIRGIEQEAREHGYQLLLCNTGDDEEKE--E--------------YIELLLQRRVDGIILASS 65 (279)
T ss_dssp CEEEEEESSSTSHHHHHHHHHHHHHHHHTTCEEEEEEETTTHHHH--H--------------HHHHHHHTTSSEEEEESS
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHHcCCEEEEecCCCchHHH--H--------------HHHHHHhcCCCEEEEecc
Confidence 468899999977667788888999999999999998766543221 1 123456678998888766
Q ss_pred chh-HHHHHHhhCCCCCCCEEEEEc
Q 002535 225 EAK-VVISNIMQEPFKSLPLVWTIH 248 (911)
Q Consensus 225 ~~~-~~ia~L~~~~~~giPvV~tiH 248 (911)
... ..+..+.. . ++|+|+.-.
T Consensus 66 ~~~~~~l~~~~~--~-~iPvV~~~~ 87 (279)
T PF00532_consen 66 ENDDEELRRLIK--S-GIPVVLIDR 87 (279)
T ss_dssp SCTCHHHHHHHH--T-TSEEEEESS
T ss_pred cCChHHHHHHHH--c-CCCEEEEEe
Confidence 553 34444442 2 789876444
No 232
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=33.84 E-value=1.9e+02 Score=25.90 Aligned_cols=93 Identities=17% Similarity=0.200 Sum_probs=57.5
Q ss_pred HHHHHHHHHHcCCCCccEEEccccccHHHHHHH--cCeeEEcccCCcCCccHHHHHHHHc---CCCEEe-cCCCc---cc
Q 002535 391 SVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNT--ADVVIYGSFLEEQTFPEILVKALCF---RKPIIA-PDLSN---IR 461 (911)
Q Consensus 391 ~~~Le~la~~lgL~~~~V~flG~v~dV~~~L~~--ADVfVlPS~~E~qGFplvLLEAMA~---G~PVIa-Td~gG---i~ 461 (911)
...++...+..++.. +......++....+.. .|++++-...+. +-+..+++.+.. .+|+|. |+... ..
T Consensus 11 ~~~l~~~l~~~~~~~--v~~~~~~~~~~~~~~~~~~d~iiid~~~~~-~~~~~~~~~i~~~~~~~~ii~~t~~~~~~~~~ 87 (112)
T PF00072_consen 11 RELLEKLLERAGYEE--VTTASSGEEALELLKKHPPDLIIIDLELPD-GDGLELLEQIRQINPSIPIIVVTDEDDSDEVQ 87 (112)
T ss_dssp HHHHHHHHHHTTEEE--EEEESSHHHHHHHHHHSTESEEEEESSSSS-SBHHHHHHHHHHHTTTSEEEEEESSTSHHHHH
T ss_pred HHHHHHHHHhCCCCE--EEEECCHHHHHHHhcccCceEEEEEeeecc-ccccccccccccccccccEEEecCCCCHHHHH
Confidence 344555555445432 4444444555555543 467776655543 456677776654 667654 43332 34
Q ss_pred cccccCccEEEEcCCCHHHHHHHHH
Q 002535 462 KYVDDRVNGYLFPKENIKALTHIIL 486 (911)
Q Consensus 462 EiV~dg~nGlLv~~~D~eaLAeaI~ 486 (911)
+.+..|..|++..|-++++|.++|+
T Consensus 88 ~~~~~g~~~~l~kp~~~~~l~~~i~ 112 (112)
T PF00072_consen 88 EALRAGADDYLSKPFSPEELRAAIN 112 (112)
T ss_dssp HHHHTTESEEEESSSSHHHHHHHHH
T ss_pred HHHHCCCCEEEECCCCHHHHHHhhC
Confidence 5567788999999999999998874
No 233
>PF08465 Herpes_TK_C: Thymidine kinase from Herpesvirus C-terminal; InterPro: IPR013672 This domain is found towards the C terminus in Herpesvirus Thymidine kinases. ; GO: 0004797 thymidine kinase activity, 0005524 ATP binding
Probab=33.51 E-value=26 Score=26.31 Aligned_cols=22 Identities=27% Similarity=0.585 Sum_probs=18.1
Q ss_pred ccCCCCHHHHHHHHhhhhhccc
Q 002535 632 DQSHGTWDEVYRSAKRADRAKN 653 (911)
Q Consensus 632 ~~~~~~~~~~~~~~~~~~~~~~ 653 (911)
+--.|-|.+||.++.|....|.
T Consensus 4 dDvpGlW~~IY~qi~kn~aIKt 25 (33)
T PF08465_consen 4 DDVPGLWTEIYTQILKNPAIKT 25 (33)
T ss_pred CccccHHHHHHHHHHhCccccc
Confidence 3457999999999999887764
No 234
>smart00672 CAP10 Putative lipopolysaccharide-modifying enzyme.
Probab=33.45 E-value=3.1e+02 Score=30.10 Aligned_cols=90 Identities=12% Similarity=0.102 Sum_probs=61.9
Q ss_pred CcCCccHHHHHHHHcCCCEEecCCC---ccccccccCccEEEEcCCCH--HHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q 002535 434 EEQTFPEILVKALCFRKPIIAPDLS---NIRKYVDDRVNGYLFPKENI--KALTHIILQVITNGKISPFARNIASIGRRS 508 (911)
Q Consensus 434 E~qGFplvLLEAMA~G~PVIaTd~g---Gi~EiV~dg~nGlLv~~~D~--eaLAeaI~~LLsd~~~p~~~~~mg~~ar~~ 508 (911)
|+.+++..+---|+|+-.|+..... -..+.+.+..+=+=+. .|- ++|.++|..+.++ ++..++++++|++.
T Consensus 153 dG~~~S~rl~~~l~~~Svvl~~~~~~~~~~~~~L~P~~HYvPv~-~d~sd~~l~~~i~~~~~~---~~~a~~Ia~~~~~~ 228 (256)
T smart00672 153 EGVAWSVRLKYILACDSVVLKVKPEYYEFFSRGLQPWVHYWPIK-SDLSCRELKEAVDWGNEH---DKKAQEIGKRGSEF 228 (256)
T ss_pred CCccchhhHHHHHhcCceEEEeCCchhHHHHhcccCccceEEee-CCCchhhHHHHHHHHHhC---HHHHHHHHHHHHHH
Confidence 3335677777788888888876632 1223344444322222 233 4499999999999 99999999999999
Q ss_pred HHh-cCHHHHHHHHHHHHHH
Q 002535 509 VKN-LMALETIEGYAMLLEN 527 (911)
Q Consensus 509 ae~-Fs~e~ia~~y~~Lye~ 527 (911)
+++ .+.+.+..-+..++.+
T Consensus 229 ~~~~L~~~~~~~Y~~~ll~e 248 (256)
T smart00672 229 IQQNLSMEDVYDYMFHLLQE 248 (256)
T ss_pred HHHHcCHHHHHHHHHHHHHH
Confidence 965 7777777777777655
No 235
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=33.11 E-value=59 Score=30.11 Aligned_cols=76 Identities=18% Similarity=0.173 Sum_probs=47.8
Q ss_pred EEEE-EEe-CCCCCchHHHHHHHHHHcCCCCccEEEccccccHHHHHHHcCeeEEcccCCcCCccHHHHHHHH--cCCCE
Q 002535 377 IKVM-ILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALC--FRKPI 452 (911)
Q Consensus 377 vkLv-IVG-G~~~e~Y~~~Le~la~~lgL~~~~V~flG~v~dV~~~L~~ADVfVlPS~~E~qGFplvLLEAMA--~G~PV 452 (911)
.+++ ++| |-...-....+++.+++.|++- .|.-.+. .++.+....+|++++..... +-..-++..+ .|+||
T Consensus 4 ~~ILl~C~~G~sSS~l~~k~~~~~~~~gi~~-~v~a~~~-~~~~~~~~~~Dvill~pqi~---~~~~~i~~~~~~~~ipv 78 (95)
T TIGR00853 4 TNILLLCAAGMSTSLLVNKMNKAAEEYGVPV-KIAAGSY-GAAGEKLDDADVVLLAPQVA---YMLPDLKKETDKKGIPV 78 (95)
T ss_pred cEEEEECCCchhHHHHHHHHHHHHHHCCCcE-EEEEecH-HHHHhhcCCCCEEEECchHH---HHHHHHHHHhhhcCCCE
Confidence 3444 444 6554445567788888888874 4444433 46777888999999877443 3334444444 47799
Q ss_pred EecCC
Q 002535 453 IAPDL 457 (911)
Q Consensus 453 IaTd~ 457 (911)
..-+.
T Consensus 79 ~~I~~ 83 (95)
T TIGR00853 79 EVING 83 (95)
T ss_pred EEeCh
Confidence 88653
No 236
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=32.83 E-value=2.3e+02 Score=30.09 Aligned_cols=84 Identities=12% Similarity=0.087 Sum_probs=54.4
Q ss_pred EEEEEEe--CCCCCchHHHHHHHHHHcCCCCccEEEcc-----ccccHHHHHHHcCeeEEcc--------cCCcCCccHH
Q 002535 377 IKVMILS--GDSTSNYSVVIEAIAHNLHYPLGVVKHMA-----AEGDVDSVLNTADVVIYGS--------FLEEQTFPEI 441 (911)
Q Consensus 377 vkLvIVG--G~~~e~Y~~~Le~la~~lgL~~~~V~flG-----~v~dV~~~L~~ADVfVlPS--------~~E~qGFplv 441 (911)
.+++++. +...+.|.+.+.+..+++|.....+.... ...++.+.+..||++++.. .+.+.++--.
T Consensus 30 ~~i~~iptA~~~~~~~~~~~~~~~~~lG~~~v~~~~~~~~~~a~~~~~~~~l~~ad~I~~~GG~~~~~~~~l~~t~l~~~ 109 (217)
T cd03145 30 ARIVVIPAASEEPAEVGEEYRDVFERLGAREVEVLVIDSREAANDPEVVARLRDADGIFFTGGDQLRITSALGGTPLLDA 109 (217)
T ss_pred CcEEEEeCCCcChhHHHHHHHHHHHHcCCceeEEeccCChHHcCCHHHHHHHHhCCEEEEeCCcHHHHHHHHcCChHHHH
Confidence 4666666 33345566677777788888751222222 2245778999999998864 1221134557
Q ss_pred HHHHHHcCCCEEecCCCcc
Q 002535 442 LVKALCFRKPIIAPDLSNI 460 (911)
Q Consensus 442 LLEAMA~G~PVIaTd~gGi 460 (911)
+.++...|+|++.+..|.+
T Consensus 110 l~~~~~~G~v~~G~SAGA~ 128 (217)
T cd03145 110 LRKVYRGGVVIGGTSAGAA 128 (217)
T ss_pred HHHHHHcCCEEEEccHHHH
Confidence 7888889999999887754
No 237
>PF08288 PIGA: PIGA (GPI anchor biosynthesis); InterPro: IPR013234 This domain is found on phosphatidylinositol N-acetylglucosaminyltransferase proteins. These proteins are involved in GPI anchor biosynthesis and are associated with the disease paroxysmal nocturnal haemoglobinuria [].; GO: 0006506 GPI anchor biosynthetic process
Probab=32.60 E-value=51 Score=30.39 Aligned_cols=43 Identities=14% Similarity=0.052 Sum_probs=29.7
Q ss_pred HHHhhhhcCccEEEEcCcchhHHHHHHhhCCCCCCCEEEEEcC
Q 002535 207 KASFVNWLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHE 249 (911)
Q Consensus 207 l~~lI~~~kpDIIhvhs~~~~~~ia~L~~~~~~giPvV~tiH~ 249 (911)
++.++-..+.||||.|.......--.++..+..|+++|+|-|.
T Consensus 42 ~R~IlirE~I~IVHgH~a~S~l~hE~i~hA~~mGlktVfTDHS 84 (90)
T PF08288_consen 42 LRNILIRERIDIVHGHQAFSTLCHEAILHARTMGLKTVFTDHS 84 (90)
T ss_pred HHHHHHHcCeeEEEeehhhhHHHHHHHHHHHhCCCcEEeeccc
Confidence 3445566899999999876632333333334678999999993
No 238
>cd06306 PBP1_TorT-like TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. The Tor respiratory system is consists of three proteins (TorC, TorA, and TorD) and is induced in the presence of TMAO. The TMAO control is tightly regulated by three proteins: TorS, TorT, and TorR. Thus, the disruption of any of these proteins can abolish the Tor respiratory induction. TorT shares homology with the sugar-binding domain of the type I periplasmic binding proteins. The members of TorT-like family bind TMAO or related compounds and are predicted to be involved in signal transduction and/or substrate transport.
Probab=32.26 E-value=2.3e+02 Score=30.22 Aligned_cols=87 Identities=13% Similarity=0.148 Sum_probs=49.4
Q ss_pred EEEEEeCCCCCChHHHHHHHHHHHHHHCCCeEEEEEeCCCcchhhhhhcCceEEEeccchhHHHhhhhcCccEEEEcCcc
Q 002535 146 QLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVNSLE 225 (911)
Q Consensus 146 rIalI~~~L~~GGae~~v~~LAk~L~~~GyeV~V~t~~~g~~~~~~~~~gi~v~~l~~~~~l~~lI~~~kpDIIhvhs~~ 225 (911)
+|+++.+++...-...++..+.+.+.+.|+++.++.....+.... +. ..+..+ ...++|.|++....
T Consensus 1 ~Igvi~~~~~~~f~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~-~~-----------~~i~~~-~~~~vdgiI~~~~~ 67 (268)
T cd06306 1 KLCVLYPHLKDAYWLSVNYGMVEEAKRLGVSLKLLEAGGYPNLAK-QI-----------AQLEDC-AAWGADAILLGAVS 67 (268)
T ss_pred CeEEEcCCCCCHHHHHHHHHHHHHHHHcCCEEEEecCCCCCCHHH-HH-----------HHHHHH-HHcCCCEEEEcCCC
Confidence 477888887655556667777788999999998875432111100 00 011222 34589988887644
Q ss_pred hhHHHHHHhhCCCCCCCEEEE
Q 002535 226 AKVVISNIMQEPFKSLPLVWT 246 (911)
Q Consensus 226 ~~~~ia~L~~~~~~giPvV~t 246 (911)
..... .+......++|+|..
T Consensus 68 ~~~~~-~~~~~~~~giPvV~~ 87 (268)
T cd06306 68 PDGLN-EILQQVAASIPVIAL 87 (268)
T ss_pred hhhHH-HHHHHHHCCCCEEEe
Confidence 32121 111112467898854
No 239
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=32.05 E-value=2.2e+02 Score=30.16 Aligned_cols=38 Identities=8% Similarity=0.096 Sum_probs=29.5
Q ss_pred EEEEEeCCCCCChHHHHHHHHHHHHHHCCCeEEEEEeC
Q 002535 146 QLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLE 183 (911)
Q Consensus 146 rIalI~~~L~~GGae~~v~~LAk~L~~~GyeV~V~t~~ 183 (911)
+|+++.+++.......++..+.+++.+.||++.+....
T Consensus 1 ~igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~ 38 (275)
T cd06320 1 KYGVVLKTLSNEFWRSLKEGYENEAKKLGVSVDIQAAP 38 (275)
T ss_pred CeeEEEecCCCHHHHHHHHHHHHHHHHhCCeEEEEccC
Confidence 47788888765566667777888899999999987643
No 240
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=32.03 E-value=2.3e+02 Score=30.06 Aligned_cols=86 Identities=9% Similarity=0.022 Sum_probs=48.9
Q ss_pred EEEEEeCCCCCChHHHHHHHHHHHHHHC---CCeEEEEEeCCCcchhhhhhcCceEEEeccchhHHHhhhhcCccEEEEc
Q 002535 146 QLALVFPDLLIDPQQLQMVTIAIALREI---GYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVN 222 (911)
Q Consensus 146 rIalI~~~L~~GGae~~v~~LAk~L~~~---GyeV~V~t~~~g~~~~~~~~~gi~v~~l~~~~~l~~lI~~~kpDIIhvh 222 (911)
||+++.+++.......++..+.+.+.+. ||++.++........... ...+..++. .++|.|++.
T Consensus 1 ~Ig~i~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~l~i~~~~~~~~~~------------~~~~~~~~~-~~vdgiIi~ 67 (272)
T cd06300 1 KIGLSNSYAGNTWRAQMLDEFKAQAKELKKAGLISEFIVTSADGDVAQQ------------IADIRNLIA-QGVDAIIIN 67 (272)
T ss_pred CeEEeccccCChHHHHHHHHHHHHHHhhhccCCeeEEEEecCCCCHHHH------------HHHHHHHHH-cCCCEEEEe
Confidence 5788888887777777888888888899 996544433221111100 011223333 489999986
Q ss_pred Ccchh--HHHHHHhhCCCCCCCEEEE
Q 002535 223 SLEAK--VVISNIMQEPFKSLPLVWT 246 (911)
Q Consensus 223 s~~~~--~~ia~L~~~~~~giPvV~t 246 (911)
..... ......+ ...++|+|..
T Consensus 68 ~~~~~~~~~~l~~~--~~~~iPvv~~ 91 (272)
T cd06300 68 PASPTALNPVIEEA--CEAGIPVVSF 91 (272)
T ss_pred CCChhhhHHHHHHH--HHCCCeEEEE
Confidence 64431 1111222 2357887754
No 241
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=31.92 E-value=2.2e+02 Score=29.87 Aligned_cols=84 Identities=17% Similarity=0.185 Sum_probs=56.1
Q ss_pred EEEEEEe--CCCCCchHHHHHHHHHHcCCCCccEEEcc--ccccHHHHHHHcCeeEEcc--------cCCcCCccHHHHH
Q 002535 377 IKVMILS--GDSTSNYSVVIEAIAHNLHYPLGVVKHMA--AEGDVDSVLNTADVVIYGS--------FLEEQTFPEILVK 444 (911)
Q Consensus 377 vkLvIVG--G~~~e~Y~~~Le~la~~lgL~~~~V~flG--~v~dV~~~L~~ADVfVlPS--------~~E~qGFplvLLE 444 (911)
.+++++. ....+.|.+.+.+..+++|.....+.... ..+++.+.+..||+++++. .+.+.+.--.+.+
T Consensus 30 ~~i~~iptA~~~~~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~l~~ad~I~~~GG~~~~~~~~l~~t~~~~~i~~ 109 (210)
T cd03129 30 ARVLFIPTASGDRDEYGEEYRAAFERLGVEVVHLLLIDTANDPDVVARLLEADGIFVGGGNQLRLLSVLRETPLLDAILK 109 (210)
T ss_pred CeEEEEeCCCCChHHHHHHHHHHHHHcCCceEEEeccCCCCCHHHHHHHhhCCEEEEcCCcHHHHHHHHHhCChHHHHHH
Confidence 5777777 33344566777777888888762222221 2367889999999999874 1221123446788
Q ss_pred HHHcCCCEEecCCCcc
Q 002535 445 ALCFRKPIIAPDLSNI 460 (911)
Q Consensus 445 AMA~G~PVIaTd~gGi 460 (911)
+...|+|++.+..|.+
T Consensus 110 ~~~~G~v~~G~SAGA~ 125 (210)
T cd03129 110 RVARGVVIGGTSAGAA 125 (210)
T ss_pred HHHcCCeEEEcCHHHH
Confidence 8888999999887754
No 242
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=31.54 E-value=6.3e+02 Score=26.47 Aligned_cols=85 Identities=16% Similarity=0.153 Sum_probs=50.0
Q ss_pred EEEEeCCCCCChHHHHHHHHHHHHHHCCCeEEEEEeCCCcchhhhhhcCceEEEeccchhHHHhhhhcCccEEEEcCcch
Q 002535 147 LALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVNSLEA 226 (911)
Q Consensus 147 IalI~~~L~~GGae~~v~~LAk~L~~~GyeV~V~t~~~g~~~~~~~~~gi~v~~l~~~~~l~~lI~~~kpDIIhvhs~~~ 226 (911)
|+++.++....-.......+.+.+++.||++.++.....+.. .. .....+...++|.|++.....
T Consensus 2 i~vi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~-~~--------------~~i~~l~~~~~dgiii~~~~~ 66 (270)
T cd06296 2 IGLVFPDLDSPWASEVLRGVEEAAAAAGYDVVLSESGRRTSP-ER--------------QWVERLSARRTDGVILVTPEL 66 (270)
T ss_pred eEEEECCCCCccHHHHHHHHHHHHHHcCCeEEEecCCCchHH-HH--------------HHHHHHHHcCCCEEEEecCCC
Confidence 577888776656666777888888999999988765432211 00 112223346789877655433
Q ss_pred hHHHHHHhhCCCCCCCEEEEEc
Q 002535 227 KVVISNIMQEPFKSLPLVWTIH 248 (911)
Q Consensus 227 ~~~ia~L~~~~~~giPvV~tiH 248 (911)
.......+ ...++|+|..-.
T Consensus 67 ~~~~~~~~--~~~~ipvV~i~~ 86 (270)
T cd06296 67 TSAQRAAL--RRTGIPFVVVDP 86 (270)
T ss_pred ChHHHHHH--hcCCCCEEEEec
Confidence 22222222 245789887543
No 243
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=31.53 E-value=73 Score=29.40 Aligned_cols=73 Identities=22% Similarity=0.286 Sum_probs=47.6
Q ss_pred EEEEe-CCCCCchHHHHHHHHHHcCCCCccEEEccccccHHHHHHHcCeeEEcccCCcCCccHHHHH--HHHcCCCEEec
Q 002535 379 VMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVK--ALCFRKPIIAP 455 (911)
Q Consensus 379 LvIVG-G~~~e~Y~~~Le~la~~lgL~~~~V~flG~v~dV~~~L~~ADVfVlPS~~E~qGFplvLLE--AMA~G~PVIaT 455 (911)
++++| |-..+-....+++.+++.|++- .|...+. .++..+...+|++++..... +-..-++ +.-.++||..-
T Consensus 3 l~~Cg~G~sTS~~~~ki~~~~~~~~~~~-~v~~~~~-~~~~~~~~~~Diil~~Pqv~---~~~~~i~~~~~~~~~pv~~I 77 (96)
T cd05564 3 LLVCSAGMSTSILVKKMKKAAEKRGIDA-EIEAVPE-SELEEYIDDADVVLLGPQVR---YMLDEVKKKAAEYGIPVAVI 77 (96)
T ss_pred EEEcCCCchHHHHHHHHHHHHHHCCCce-EEEEecH-HHHHHhcCCCCEEEEChhHH---HHHHHHHHHhccCCCcEEEc
Confidence 45566 7555445567888888888874 5555443 46777888999998876433 2233333 34578898876
Q ss_pred C
Q 002535 456 D 456 (911)
Q Consensus 456 d 456 (911)
+
T Consensus 78 ~ 78 (96)
T cd05564 78 D 78 (96)
T ss_pred C
Confidence 5
No 244
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=30.82 E-value=2.8e+02 Score=30.63 Aligned_cols=42 Identities=14% Similarity=0.170 Sum_probs=33.3
Q ss_pred CCCCEEEEEeCCCCCChHHHHHHHHHHHHHHCCCeEEEEEeCC
Q 002535 142 YRKPQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLED 184 (911)
Q Consensus 142 ~rkprIalI~~~L~~GGae~~v~~LAk~L~~~GyeV~V~t~~~ 184 (911)
..++++..++ +....|=...+.++|..+.+.|+.|.+++...
T Consensus 69 ~~~~~vi~l~-G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~ 110 (272)
T TIGR00064 69 ENKPNVILFV-GVNGVGKTTTIAKLANKLKKQGKSVLLAAGDT 110 (272)
T ss_pred CCCCeEEEEE-CCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCC
Confidence 4556777776 46666788889999999999999999998654
No 245
>PF10649 DUF2478: Protein of unknown function (DUF2478); InterPro: IPR018912 This is a family of hypothetical bacterial proteins encoded in the vicinity of molybdenum ABC transporter gene-products MobA, MobB and MobC. However the function could not be confirmed.
Probab=30.18 E-value=67 Score=32.79 Aligned_cols=40 Identities=23% Similarity=0.374 Sum_probs=29.4
Q ss_pred HHHHHHH-cCeeEEccc----CCcCCccHHHHHHHHcCCCEEecC
Q 002535 417 VDSVLNT-ADVVIYGSF----LEEQTFPEILVKALCFRKPIIAPD 456 (911)
Q Consensus 417 V~~~L~~-ADVfVlPS~----~E~qGFplvLLEAMA~G~PVIaTd 456 (911)
+...+.. +|++|+.-+ .++.||--.+.+|++.|+||++.=
T Consensus 86 l~~al~~~~DLlivNkFGk~Ea~G~Glr~~i~~A~~~giPVLt~V 130 (159)
T PF10649_consen 86 LRRALAEGADLLIVNKFGKQEAEGRGLRDEIAAALAAGIPVLTAV 130 (159)
T ss_pred HHHHHhcCCCEEEEcccHHhhhcCCCHHHHHHHHHHCCCCEEEEE
Confidence 4444444 899998742 344467778999999999999864
No 246
>PRK12585 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=30.08 E-value=37 Score=35.47 Aligned_cols=18 Identities=33% Similarity=0.542 Sum_probs=11.4
Q ss_pred HHHHhhhhhHHHHhhhhc
Q 002535 615 MLNVRKRREEEELKDRID 632 (911)
Q Consensus 615 ~~~~~~~~~~~e~~~r~~ 632 (911)
++-++.|.|+|||++|++
T Consensus 126 ~~~~~~~~~~~~~~~~~~ 143 (197)
T PRK12585 126 EQIEKARQEREELEERME 143 (197)
T ss_pred HHHHHHHHhHHHHHHHHH
Confidence 344455777777777765
No 247
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=29.44 E-value=2e+02 Score=32.16 Aligned_cols=102 Identities=8% Similarity=0.125 Sum_probs=61.0
Q ss_pred CCCCCCEEEEEeCCCCCChHHHHHHHHHHHHHH--CCCeEEEEEeCCCcchhhhhhcCceEEEeccc--------hhHHH
Q 002535 140 FGYRKPQLALVFPDLLIDPQQLQMVTIAIALRE--IGYAIQVYSLEDGRAHEVWRNIGVPVAILQTG--------REKAS 209 (911)
Q Consensus 140 ~~~rkprIalI~~~L~~GGae~~v~~LAk~L~~--~GyeV~V~t~~~g~~~~~~~~~gi~v~~l~~~--------~~l~~ 209 (911)
...+|+|+++...+-. .- +..+.++... .+.+|.++...........+..|+++..++.. ..+..
T Consensus 85 ~~~~~~ri~vl~Sg~g---sn--l~al~~~~~~~~~~~~i~~visn~~~~~~lA~~~gIp~~~~~~~~~~~~~~~~~~~~ 159 (286)
T PRK06027 85 DSAERKRVVILVSKED---HC--LGDLLWRWRSGELPVEIAAVISNHDDLRSLVERFGIPFHHVPVTKETKAEAEARLLE 159 (286)
T ss_pred ccccCcEEEEEEcCCC---CC--HHHHHHHHHcCCCCcEEEEEEEcChhHHHHHHHhCCCEEEeccCccccchhHHHHHH
Confidence 3668889988776542 21 2334444443 35788777666655566678889998765432 13455
Q ss_pred hhhhcCccEEEEcCcchhHHHHHHhhCCCCCCCEEEEEcCc
Q 002535 210 FVNWLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEG 250 (911)
Q Consensus 210 lI~~~kpDIIhvhs~~~~~~ia~L~~~~~~giPvV~tiH~~ 250 (911)
.++..++|+|++-..... +-..++.. +.+ -++.+|..
T Consensus 160 ~l~~~~~Dlivlagy~~i-l~~~~l~~-~~~--~iiNiHpS 196 (286)
T PRK06027 160 LIDEYQPDLVVLARYMQI-LSPDFVAR-FPG--RIINIHHS 196 (286)
T ss_pred HHHHhCCCEEEEecchhh-cCHHHHhh-ccC--CceecCcc
Confidence 577789999998876552 22233322 221 26788864
No 248
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=29.27 E-value=6.4e+02 Score=27.88 Aligned_cols=102 Identities=21% Similarity=0.226 Sum_probs=65.3
Q ss_pred EEEEEEeccccccccccHHHHHHHHHHhhhhcccCCCCCCCEEEEEEe--CCCCC---------chHHHHHHHHHHcCCC
Q 002535 336 VIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILS--GDSTS---------NYSVVIEAIAHNLHYP 404 (911)
Q Consensus 336 vIL~VGsrl~~~KGiKg~dlLLeAl~~L~~~~p~~~~~~~~vkLvIVG--G~~~e---------~Y~~~Le~la~~lgL~ 404 (911)
.++++| .... .+.+.+++.++.|++.+ ++++..| -|-+. +-...+++.++++|++
T Consensus 28 ~~~iaG-PCsi----e~~~~~~~~A~~lk~~g---------~~~~r~~~~kpRTs~~s~~G~g~~gl~~l~~~~~~~Gl~ 93 (266)
T PRK13398 28 KIIIAG-PCAV----ESEEQMVKVAEKLKELG---------VHMLRGGAFKPRTSPYSFQGLGEEGLKILKEVGDKYNLP 93 (266)
T ss_pred EEEEEe-CCcC----CCHHHHHHHHHHHHHcC---------CCEEEEeeecCCCCCCccCCcHHHHHHHHHHHHHHcCCC
Confidence 556666 7777 67888899999988753 5666666 12111 1235677788888887
Q ss_pred CccEEEccccccHHHHHHHcCeeEEcccCCcCCccHHHHHHH-HcCCCEEecC
Q 002535 405 LGVVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKAL-CFRKPIIAPD 456 (911)
Q Consensus 405 ~~~V~flG~v~dV~~~L~~ADVfVlPS~~E~qGFplvLLEAM-A~G~PVIaTd 456 (911)
- -..+.. ..++..+...+|++-.+|+.-. -..+++++ ..|+||+.++
T Consensus 94 ~-~te~~d-~~~~~~l~~~vd~~kIga~~~~---n~~LL~~~a~~gkPV~lk~ 141 (266)
T PRK13398 94 V-VTEVMD-TRDVEEVADYADMLQIGSRNMQ---NFELLKEVGKTKKPILLKR 141 (266)
T ss_pred E-EEeeCC-hhhHHHHHHhCCEEEECccccc---CHHHHHHHhcCCCcEEEeC
Confidence 5 233332 2455555566899999997553 34444444 5789998875
No 249
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=29.21 E-value=1e+03 Score=28.18 Aligned_cols=94 Identities=24% Similarity=0.308 Sum_probs=55.4
Q ss_pred EEEEEeCCCCCchHHHHHHHHHHcCCCCccEEEccccccHHHHHHHcCeeEEcccCCcCCccHHHH-HHHHcCCCEEecC
Q 002535 378 KVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILV-KALCFRKPIIAPD 456 (911)
Q Consensus 378 kLvIVGG~~~e~Y~~~Le~la~~lgL~~~~V~flG~v~dV~~~L~~ADVfVlPS~~E~qGFplvLL-EAMA~G~PVIaTd 456 (911)
+++|+.-.. +.-++++++++..- + ..+++..++..+|+++..+-...+-.+...+ +|+.-....+.-|
T Consensus 204 ~i~IaNRT~-----erA~~La~~~~~~~--~----~l~el~~~l~~~DvVissTsa~~~ii~~~~ve~a~~~r~~~livD 272 (414)
T COG0373 204 KITIANRTL-----ERAEELAKKLGAEA--V----ALEELLEALAEADVVISSTSAPHPIITREMVERALKIRKRLLIVD 272 (414)
T ss_pred EEEEEcCCH-----HHHHHHHHHhCCee--e----cHHHHHHhhhhCCEEEEecCCCccccCHHHHHHHHhcccCeEEEE
Confidence 666666332 56678888777221 1 2369999999999999876443323444433 3444444567778
Q ss_pred CCccccccccCc----cEEEEcCCCHHHHHH
Q 002535 457 LSNIRKYVDDRV----NGYLFPKENIKALTH 483 (911)
Q Consensus 457 ~gGi~EiV~dg~----nGlLv~~~D~eaLAe 483 (911)
.+-.+++- ++. +-++++-+|.+.+++
T Consensus 273 iavPRdie-~~v~~l~~v~l~~iDDL~~iv~ 302 (414)
T COG0373 273 IAVPRDVE-PEVGELPNVFLYTIDDLEEIVE 302 (414)
T ss_pred ecCCCCCC-ccccCcCCeEEEehhhHHHHHH
Confidence 77666543 322 235665444444433
No 250
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=28.90 E-value=49 Score=31.89 Aligned_cols=44 Identities=25% Similarity=0.217 Sum_probs=30.2
Q ss_pred ccHHHHHHHcCeeEEcccCCcCCccHHHHHHHHcCCCEEecCCCcc
Q 002535 415 GDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSNI 460 (911)
Q Consensus 415 ~dV~~~L~~ADVfVlPS~~E~qGFplvLLEAMA~G~PVIaTd~gGi 460 (911)
+++.+++..+|++|--|.-+ +.--.+-.|+.+|+|+|.-.+|..
T Consensus 59 ~~l~~~~~~~DVvIDfT~p~--~~~~~~~~~~~~g~~~ViGTTG~~ 102 (124)
T PF01113_consen 59 DDLEELLEEADVVIDFTNPD--AVYDNLEYALKHGVPLVIGTTGFS 102 (124)
T ss_dssp S-HHHHTTH-SEEEEES-HH--HHHHHHHHHHHHT-EEEEE-SSSH
T ss_pred hhHHHhcccCCEEEEcCChH--HhHHHHHHHHhCCCCEEEECCCCC
Confidence 68889999999999887555 355567778899999988666653
No 251
>cd06302 PBP1_LsrB_Quorum_Sensing Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs. Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs from other bacteria. The members of this group are homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transporters of many sugar based solutes in bacteria and archaea and that are a member of the type I periplasmic binding protein superfamily. LsrB binds a chemically distinct form of the AI-2 signal that lacks boron, in contrast to the Vibrio harveyi AI-2 signaling molecule that has an unusual furanosyl borate diester. Hence, many bacteria coordinate their gene expression according to the local density of their population by producing species specific AI-2. This process of quorum sensing allows LsrB to function as a periplasmic AI-2 binding p
Probab=28.89 E-value=2.1e+02 Score=31.12 Aligned_cols=88 Identities=13% Similarity=-0.073 Sum_probs=50.2
Q ss_pred EEEEEeCCCCCChHHHHHHHHHHHHHHCCCeEEEEEeCCCcchhhhhhcCceEEEeccchhHHHhhhhcCccEEEEcCcc
Q 002535 146 QLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVNSLE 225 (911)
Q Consensus 146 rIalI~~~L~~GGae~~v~~LAk~L~~~GyeV~V~t~~~g~~~~~~~~~gi~v~~l~~~~~l~~lI~~~kpDIIhvhs~~ 225 (911)
+|+++.++....-....+..+.+.+.+.||++.++...+.......+ .+. .+...++|.|++....
T Consensus 1 ~I~vi~~~~~~~f~~~i~~gi~~~a~~~g~~v~~~~~~~~d~~~~~~-------------~i~-~~~~~~~DgiIi~~~~ 66 (298)
T cd06302 1 TIAFVPKVTGIPYFNRMEEGAKEAAKELGVDAIYVGPTTADAAGQVQ-------------IIE-DLIAQGVDAIAVVPND 66 (298)
T ss_pred CEEEEEcCCCChHHHHHHHHHHHHHHHhCCeEEEECCCCCCHHHHHH-------------HHH-HHHhcCCCEEEEecCC
Confidence 46778887766667777888888899999999876433221111110 111 2233578988887654
Q ss_pred hhHHHHHHhhCCCCCCCEEEEE
Q 002535 226 AKVVISNIMQEPFKSLPLVWTI 247 (911)
Q Consensus 226 ~~~~ia~L~~~~~~giPvV~ti 247 (911)
.......+......++|+|..-
T Consensus 67 ~~~~~~~~~~~~~~~iPvV~v~ 88 (298)
T cd06302 67 PDALEPVLKKAREAGIKVVTHD 88 (298)
T ss_pred HHHHHHHHHHHHHCCCeEEEEc
Confidence 3211111111124578887643
No 252
>PRK10867 signal recognition particle protein; Provisional
Probab=28.82 E-value=2.3e+02 Score=33.58 Aligned_cols=42 Identities=10% Similarity=0.071 Sum_probs=33.3
Q ss_pred CCCCEEEEEeCCCCCChHHHHHHHHHHHHHHC-CCeEEEEEeCC
Q 002535 142 YRKPQLALVFPDLLIDPQQLQMVTIAIALREI-GYAIQVYSLED 184 (911)
Q Consensus 142 ~rkprIalI~~~L~~GGae~~v~~LAk~L~~~-GyeV~V~t~~~ 184 (911)
..+|.+.++++ +...|=...+..+|..|... |+.|.+++...
T Consensus 97 ~~~p~vI~~vG-~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~ 139 (433)
T PRK10867 97 AKPPTVIMMVG-LQGAGKTTTAGKLAKYLKKKKKKKVLLVAADV 139 (433)
T ss_pred CCCCEEEEEEC-CCCCcHHHHHHHHHHHHHHhcCCcEEEEEccc
Confidence 34566666664 66778888899999999998 99999998754
No 253
>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]
Probab=28.51 E-value=1.5e+02 Score=33.98 Aligned_cols=45 Identities=24% Similarity=0.296 Sum_probs=36.3
Q ss_pred CCCCEEEEEeCCCCCChHHH--HHHHHHHHHHHCCCeEEEEEeCCCc
Q 002535 142 YRKPQLALVFPDLLIDPQQL--QMVTIAIALREIGYAIQVYSLEDGR 186 (911)
Q Consensus 142 ~rkprIalI~~~L~~GGae~--~v~~LAk~L~~~GyeV~V~t~~~g~ 186 (911)
.+-|.=.+++++++.||+-+ .+..+++.|+++|+.+-+++...+.
T Consensus 43 ~~~pvPVI~VGNltvGGtGKTP~vi~la~~l~~rG~~~gvvSRGYgg 89 (336)
T COG1663 43 YRAPVPVICVGNLTVGGTGKTPVVIWLAEALQARGVRVGVVSRGYGG 89 (336)
T ss_pred ccCCCCEEEEccEEECCCCcCHHHHHHHHHHHhcCCeeEEEecCcCC
Confidence 44455578889998887654 6899999999999999999986643
No 254
>TIGR02574 stabl_TIGR02574 putative addiction module component, TIGR02574 family. Members of this family are bacterial proteins, typically are about 75 amino acids long, always found as part of a pair (at least) of two small genes. The other in the pair always belongs to a subfamily of the larger family pfam05016 (although not necessarily scoring above the designated cutoff), which contains plasmid stabilization proteins. It is likely that this protein and its pfam05016 member partner comprise some form of addiction module, although these gene pairs usually are found on the bacterial main chromosome.
Probab=26.33 E-value=56 Score=27.86 Aligned_cols=27 Identities=22% Similarity=0.539 Sum_probs=18.1
Q ss_pred hhhHHHHhhhhc------cCCCCHHHHHHHHhh
Q 002535 621 RREEEELKDRID------QSHGTWDEVYRSAKR 647 (911)
Q Consensus 621 ~~~~~e~~~r~~------~~~~~~~~~~~~~~~ 647 (911)
.--.+||+.|.+ ...-+||||.+.+|+
T Consensus 30 ~~~~~el~~R~~~~~~g~~~~i~~eev~~~ir~ 62 (63)
T TIGR02574 30 EAQKAELDRRLADYKADPSKASPWEEVRARIRK 62 (63)
T ss_pred HHHHHHHHHHHHHHHcCCcCCCCHHHHHHHHHc
Confidence 333556666653 344689999999886
No 255
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=26.20 E-value=2.7e+02 Score=25.89 Aligned_cols=44 Identities=14% Similarity=0.117 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHCCCeEEEEEeCCCcchhhhhhcCceEEEeccchhHHHhhhhcCccEEEEcC
Q 002535 162 QMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVNS 223 (911)
Q Consensus 162 ~v~~LAk~L~~~GyeV~V~t~~~g~~~~~~~~~gi~v~~l~~~~~l~~lI~~~kpDIIhvhs 223 (911)
-+..++..|++.||+|.++...... ..+...+...+||+|-+..
T Consensus 16 Gl~~la~~l~~~G~~v~~~d~~~~~------------------~~l~~~~~~~~pd~V~iS~ 59 (121)
T PF02310_consen 16 GLLYLAAYLRKAGHEVDILDANVPP------------------EELVEALRAERPDVVGISV 59 (121)
T ss_dssp HHHHHHHHHHHTTBEEEEEESSB-H------------------HHHHHHHHHTTCSEEEEEE
T ss_pred HHHHHHHHHHHCCCeEEEECCCCCH------------------HHHHHHHhcCCCcEEEEEc
Confidence 4667888899999999987543211 3445566778999998866
No 256
>TIGR02955 TMAO_TorT TMAO reductase system periplasmic protein TorT. Members of this family are the periplasmic protein TorT which, together with the the TorS/TorR histidine kinase/response regulator system, regulates expression of the torCAD operon for trimethylamine N-oxide reductase (TMAO reductase). It appears to bind an inducer for TMAO reductase, and shows homology to a periplasmic D-ribose binding protein.
Probab=26.18 E-value=3.2e+02 Score=29.69 Aligned_cols=86 Identities=14% Similarity=0.158 Sum_probs=49.1
Q ss_pred EEEEEeCCCCCChHHHHHHHHHHHHHHCCCeEEEEEeCCC-cchhhhhhcCceEEEeccchhHHHhhhhcCccEEEEcCc
Q 002535 146 QLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDG-RAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVNSL 224 (911)
Q Consensus 146 rIalI~~~L~~GGae~~v~~LAk~L~~~GyeV~V~t~~~g-~~~~~~~~~gi~v~~l~~~~~l~~lI~~~kpDIIhvhs~ 224 (911)
+|.++++++...-.......+.+.+++.||++.+++.... ...... .....+...++|.|++...
T Consensus 1 ~igvvvp~~~n~f~~~~~~gi~~~a~~~g~~v~~~~~~~~~~~~~~~--------------~~i~~l~~~~vDgiIi~~~ 66 (295)
T TIGR02955 1 KLCALYPHLKDSYWLSINYGMVEQAKHLGVELKVLEAGGYPNLDKQL--------------AQIEQCKSWGADAILLGTV 66 (295)
T ss_pred CeeEEecCCCcHHHHHHHHHHHHHHHHhCCEEEEEcCCCCCCHHHHH--------------HHHHHHHHcCCCEEEEecC
Confidence 4778888876556666667788888999999999765321 111110 1122234568898887653
Q ss_pred chhHHHHHHhhCCCCCCCEEEE
Q 002535 225 EAKVVISNIMQEPFKSLPLVWT 246 (911)
Q Consensus 225 ~~~~~ia~L~~~~~~giPvV~t 246 (911)
........+... ..++|+|..
T Consensus 67 ~~~~~~~~l~~~-~~~iPvV~~ 87 (295)
T TIGR02955 67 SPEALNHDLAQL-TKSIPVFAL 87 (295)
T ss_pred ChhhhhHHHHHH-hcCCCEEEE
Confidence 322111111111 237898864
No 257
>cd01574 PBP1_LacI Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of LacI is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=26.03 E-value=3.4e+02 Score=28.38 Aligned_cols=86 Identities=20% Similarity=0.257 Sum_probs=51.1
Q ss_pred EEEEeCCCCCChHHHHHHHHHHHHHHCCCeEEEEEeCCCcchhhhhhcCceEEEeccchhHHHhhhhcCccEEEEcCcch
Q 002535 147 LALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVNSLEA 226 (911)
Q Consensus 147 IalI~~~L~~GGae~~v~~LAk~L~~~GyeV~V~t~~~g~~~~~~~~~gi~v~~l~~~~~l~~lI~~~kpDIIhvhs~~~ 226 (911)
|++|+++....-....+..+.+.+.+.||++.++.....+..... .....+...++|.|++.....
T Consensus 2 i~vi~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~l~~~~vdgiii~~~~~ 67 (264)
T cd01574 2 IGVVTTDLALHGPSSTLAAIESAAREAGYAVTLSMLAEADEEALR--------------AAVRRLLAQRVDGVIVNAPLD 67 (264)
T ss_pred EEEEeCCCCcccHHHHHHHHHHHHHHCCCeEEEEeCCCCchHHHH--------------HHHHHHHhcCCCEEEEeCCCC
Confidence 678888777655666778888899999999998875432111110 112223445789888765443
Q ss_pred hHHHHHHhhCCCCCCCEEEEEc
Q 002535 227 KVVISNIMQEPFKSLPLVWTIH 248 (911)
Q Consensus 227 ~~~ia~L~~~~~~giPvV~tiH 248 (911)
........ ...++|+|..-.
T Consensus 68 ~~~~~~~~--~~~~ipvv~~~~ 87 (264)
T cd01574 68 DADAALAA--APADVPVVFVDG 87 (264)
T ss_pred ChHHHHHH--HhcCCCEEEEec
Confidence 22211111 245789886533
No 258
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=25.97 E-value=5.6e+02 Score=28.14 Aligned_cols=119 Identities=15% Similarity=0.071 Sum_probs=75.2
Q ss_pred EEEEeccccccccccHHHHHHHHHHhhhhcccCCCCCCCEEEEEEe--CCCCCc---------hHHHHHHHHHHcCCCCc
Q 002535 338 AIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILS--GDSTSN---------YSVVIEAIAHNLHYPLG 406 (911)
Q Consensus 338 L~VGsrl~~~KGiKg~dlLLeAl~~L~~~~p~~~~~~~~vkLvIVG--G~~~e~---------Y~~~Le~la~~lgL~~~ 406 (911)
++.| ...- ..-+.+++.++.+++.+ +.++.-| .|-++. -...|++.++++|++-
T Consensus 18 ~iaG-PC~v----Es~e~~~~~a~~~~~~g---------~~~~r~g~~kpRts~~sf~G~G~~gl~~L~~~~~~~Gl~~- 82 (250)
T PRK13397 18 FIVG-PCSI----ESYDHIRLAASSAKKLG---------YNYFRGGAYKPRTSAASFQGLGLQGIRYLHEVCQEFGLLS- 82 (250)
T ss_pred EEec-cCcc----CCHHHHHHHHHHHHHcC---------CCEEEecccCCCCCCcccCCCCHHHHHHHHHHHHHcCCCE-
Confidence 3335 5555 55667788888866543 5666655 232222 2467778888888874
Q ss_pred cEEEccccccHHHHHHHcCeeEEcccCCcCCccHHHHHHH-HcCCCEEecCCCccccccccCccEEEEcCCCHHHHHHHH
Q 002535 407 VVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKAL-CFRKPIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHII 485 (911)
Q Consensus 407 ~V~flG~v~dV~~~L~~ADVfVlPS~~E~qGFplvLLEAM-A~G~PVIaTd~gGi~EiV~dg~nGlLv~~~D~eaLAeaI 485 (911)
+.-.-...++..+...+|++=.||+.-. -..+++++ ..|+||+.+.- .. .+++++..++
T Consensus 83 -~Tev~d~~~v~~~~e~vdilqIgs~~~~---n~~LL~~va~tgkPVilk~G-------------~~---~t~~e~~~A~ 142 (250)
T PRK13397 83 -VSEIMSERQLEEAYDYLDVIQVGARNMQ---NFEFLKTLSHIDKPILFKRG-------------LM---ATIEEYLGAL 142 (250)
T ss_pred -EEeeCCHHHHHHHHhcCCEEEECccccc---CHHHHHHHHccCCeEEEeCC-------------CC---CCHHHHHHHH
Confidence 3333233567777778999999997653 35566666 57999987742 11 2566777777
Q ss_pred HHHHHc
Q 002535 486 LQVITN 491 (911)
Q Consensus 486 ~~LLsd 491 (911)
..+.+.
T Consensus 143 e~i~~~ 148 (250)
T PRK13397 143 SYLQDT 148 (250)
T ss_pred HHHHHc
Confidence 766653
No 259
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=25.82 E-value=1.6e+02 Score=28.77 Aligned_cols=41 Identities=17% Similarity=0.173 Sum_probs=32.5
Q ss_pred CEEEEEeCCCCCCh-HHHHHHHHHHHHHHCCCeEEEEEeCCC
Q 002535 145 PQLALVFPDLLIDP-QQLQMVTIAIALREIGYAIQVYSLEDG 185 (911)
Q Consensus 145 prIalI~~~L~~GG-ae~~v~~LAk~L~~~GyeV~V~t~~~g 185 (911)
+||++|.++...+| ...++..+++.+.+.|+++.++...+.
T Consensus 1 Mkilii~gS~r~~~~t~~l~~~~~~~l~~~g~e~~~i~l~~~ 42 (152)
T PF03358_consen 1 MKILIINGSPRKNSNTRKLAEAVAEQLEEAGAEVEVIDLADY 42 (152)
T ss_dssp -EEEEEESSSSTTSHHHHHHHHHHHHHHHTTEEEEEEECTTS
T ss_pred CEEEEEECcCCCCCHHHHHHHHHHHHHHHcCCEEEEEecccc
Confidence 58999999996555 556667777888888999999988764
No 260
>PRK04155 chaperone protein HchA; Provisional
Probab=25.78 E-value=4.8e+02 Score=29.21 Aligned_cols=75 Identities=15% Similarity=0.211 Sum_probs=45.9
Q ss_pred CeeEeeccchhhhhhccccccccccccccccc-CCCCCCCEEEEEeCCCC-----------CChHHHHHHHHHHHHHHCC
Q 002535 107 EEVTFLPLKLMEKFQSEDKDVNLTSVFHRKLH-RFGYRKPQLALVFPDLL-----------IDPQQLQMVTIAIALREIG 174 (911)
Q Consensus 107 ~~~~~~p~~~~~~f~~~~~~~~~~~~~~~~~~-r~~~rkprIalI~~~L~-----------~GGae~~v~~LAk~L~~~G 174 (911)
|.=-|-||..+.+-.-... .+++ |.... ++.--| +|++|.++-. .|=-+.=+......|.+.|
T Consensus 16 ~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~k-kiL~v~t~~~~~~~~~g~~~~tG~~~~E~~~P~~~L~~AG 90 (287)
T PRK04155 16 EDNAFFPSPYSLSQYTSPK-SDLD---GVDYPKPYRGGK-KILMIAADERYLPMDNGKLFSTGNHPVETLLPMYHLHKAG 90 (287)
T ss_pred ccCCcCCChhhhhhhcCCC-cCCC---CCcCCCcCCCCC-eEEEEEcCcccccCCCCCcCCCCccHHHHHHHHHHHHHCC
Confidence 4456788887755432222 2333 33333 454444 8888887432 2223445677788999999
Q ss_pred CeEEEEEeCCCc
Q 002535 175 YAIQVYSLEDGR 186 (911)
Q Consensus 175 yeV~V~t~~~g~ 186 (911)
++|.+.+...++
T Consensus 91 ~eVdiAS~~G~~ 102 (287)
T PRK04155 91 FEFDVATLSGNP 102 (287)
T ss_pred CEEEEEecCCCc
Confidence 999999986543
No 261
>PRK09526 lacI lac repressor; Reviewed
Probab=25.38 E-value=4.4e+02 Score=29.09 Aligned_cols=89 Identities=11% Similarity=0.212 Sum_probs=50.6
Q ss_pred CCCEEEEEeCCCCCChHHHHHHHHHHHHHHCCCeEEEEEeCCCcchhhhhhcCceEEEeccchhHHHhhhhcCccEEEEc
Q 002535 143 RKPQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVN 222 (911)
Q Consensus 143 rkprIalI~~~L~~GGae~~v~~LAk~L~~~GyeV~V~t~~~g~~~~~~~~~gi~v~~l~~~~~l~~lI~~~kpDIIhvh 222 (911)
+...|+++++++...-...++..+.+.+.+.||++.++.......... ......+...++|.|++.
T Consensus 62 ~~~~Igvv~~~~~~~~~~~~~~gi~~~a~~~g~~~~i~~~~~~~~~~~--------------~~~l~~l~~~~vdGiii~ 127 (342)
T PRK09526 62 QSLTIGLATTSLALHAPSQIAAAIKSRADQLGYSVVISMVERSGVEAC--------------QAAVNELLAQRVSGVIIN 127 (342)
T ss_pred CCceEEEEeCCCCcccHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHH--------------HHHHHHHHhcCCCEEEEe
Confidence 345789999887654455667778888899999999876432111100 011122344678988875
Q ss_pred CcchhHHHHHHhhCCCCCCCEEEE
Q 002535 223 SLEAKVVISNIMQEPFKSLPLVWT 246 (911)
Q Consensus 223 s~~~~~~ia~L~~~~~~giPvV~t 246 (911)
.+........+... ..++|+|+.
T Consensus 128 ~~~~~~~~~~~~~~-~~~iPvV~~ 150 (342)
T PRK09526 128 VPLEDADAEKIVAD-CADVPCLFL 150 (342)
T ss_pred cCCCcchHHHHHhh-cCCCCEEEE
Confidence 32221122222222 347898764
No 262
>PF11997 DUF3492: Domain of unknown function (DUF3492); InterPro: IPR022622 This domain is functionally uncharacterised and is found in bacteria, archaea and eukaryotes. It is typically between 259 to 282 amino acids in length. This region is found N-terminal PF00534 from PFAM. There are two conserved sequence motifs: GGVS and EHGIY.
Probab=25.36 E-value=1.3e+02 Score=33.09 Aligned_cols=37 Identities=14% Similarity=-0.056 Sum_probs=28.6
Q ss_pred cCccEEEEcCcchhHHHHHHhhCCCCCCCEEEEEcCch
Q 002535 214 LNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGT 251 (911)
Q Consensus 214 ~kpDIIhvhs~~~~~~ia~L~~~~~~giPvV~tiH~~~ 251 (911)
-+.|+.|+.+.-..++++.+++ ...++|++.|-||--
T Consensus 171 P~advyHsvstGyAgl~g~~~k-~~~g~P~lLTEHGIY 207 (268)
T PF11997_consen 171 PKADVYHSVSTGYAGLLGALAK-YRYGRPFLLTEHGIY 207 (268)
T ss_pred CCCCEEecCCccHHHHHHHHHH-HHhCCCEEEecCCcc
Confidence 4789999988777556666664 478999999999843
No 263
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=25.36 E-value=5.1e+02 Score=27.99 Aligned_cols=132 Identities=18% Similarity=0.196 Sum_probs=79.0
Q ss_pred cccCCeeEeeccchhhhhhc-----ccccccccccccccccCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHHHCCCeE
Q 002535 103 LDFGEEVTFLPLKLMEKFQS-----EDKDVNLTSVFHRKLHRFGYRKPQLALVFPDLLIDPQQLQMVTIAIALREIGYAI 177 (911)
Q Consensus 103 ~~~g~~~~~~p~~~~~~f~~-----~~~~~~~~~~~~~~~~r~~~rkprIalI~~~L~~GGae~~v~~LAk~L~~~GyeV 177 (911)
|.-|..+++.-.++..+.+. ++.|.++--. .....|+.-+.+.+++.| ++.+..+..++... +.+
T Consensus 59 L~DG~~V~ls~~~v~~~lq~~i~~le~~G~d~ill--lCTG~F~~l~~~~~lleP-------~ril~~lV~al~~~-~~v 128 (221)
T PF07302_consen 59 LRDGTQVVLSKKKVEPRLQACIAQLEAQGYDVILL--LCTGEFPGLTARNPLLEP-------DRILPPLVAALVGG-HQV 128 (221)
T ss_pred eCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCEEEE--eccCCCCCCCCCcceeeh-------HHhHHHHHHHhcCC-CeE
Confidence 55589998887777776643 2222222222 345566544444446665 35677777777665 899
Q ss_pred EEEEeCCCcc---hhhhhhcCceEEEeccch------h---HHHhhhhcCccEEEEcCcchhHHHHHHhhCCCCCCCEEE
Q 002535 178 QVYSLEDGRA---HEVWRNIGVPVAILQTGR------E---KASFVNWLNYDGILVNSLEAKVVISNIMQEPFKSLPLVW 245 (911)
Q Consensus 178 ~V~t~~~g~~---~~~~~~~gi~v~~l~~~~------~---l~~lI~~~kpDIIhvhs~~~~~~ia~L~~~~~~giPvV~ 245 (911)
-|+.+...+. ...|...+.++.....+. . ...-+...+.|+|..++.-.....-..+++ ..++|++.
T Consensus 129 GVivP~~eQ~~~~~~kW~~l~~~~~~a~asPy~~~~~~l~~Aa~~L~~~gadlIvLDCmGYt~~~r~~~~~-~~g~PVlL 207 (221)
T PF07302_consen 129 GVIVPLPEQIAQQAEKWQPLGNPVVVAAASPYEGDEEELAAAARELAEQGADLIVLDCMGYTQEMRDIVQR-ALGKPVLL 207 (221)
T ss_pred EEEecCHHHHHHHHHHHHhcCCCeEEEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCHHHHHHHHH-HhCCCEEe
Confidence 9999876543 356777765543332221 1 223356679999999987664344444433 56789875
No 264
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=25.08 E-value=4.7e+02 Score=22.93 Aligned_cols=57 Identities=19% Similarity=0.262 Sum_probs=38.9
Q ss_pred CeEEEEEEeccccccccccHHHHHHHHHHhhhhcccCCCCCCCEEEEEEeCC-CCCchHHHHHHHHHHcCCCC
Q 002535 334 DLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILSGD-STSNYSVVIEAIAHNLHYPL 405 (911)
Q Consensus 334 ~~vIL~VGsrl~~~KGiKg~dlLLeAl~~L~~~~p~~~~~~~~vkLvIVGG~-~~e~Y~~~Le~la~~lgL~~ 405 (911)
...|++.|++. . .+...+-.++.++..+.|+ .++|-||. .. -....++.+.+.+++.
T Consensus 3 g~rVli~GgR~-~----~D~~~i~~~Ld~~~~~~~~--------~~lvhGga~~G--aD~iA~~wA~~~gv~~ 60 (71)
T PF10686_consen 3 GMRVLITGGRD-W----TDHELIWAALDKVHARHPD--------MVLVHGGAPKG--ADRIAARWARERGVPV 60 (71)
T ss_pred CCEEEEEECCc-c----ccHHHHHHHHHHHHHhCCC--------EEEEECCCCCC--HHHHHHHHHHHCCCee
Confidence 34677777554 3 5678889999999988886 55777764 32 2244556777777764
No 265
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=24.68 E-value=2.9e+02 Score=32.75 Aligned_cols=41 Identities=10% Similarity=0.100 Sum_probs=32.1
Q ss_pred CCCEEEEEeCCCCCChHHHHHHHHHHHHHHCCCeEEEEEeCC
Q 002535 143 RKPQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLED 184 (911)
Q Consensus 143 rkprIalI~~~L~~GGae~~v~~LAk~L~~~GyeV~V~t~~~ 184 (911)
.+|.+..+++ +...|=...+..||..|.+.|+.|.+++...
T Consensus 98 ~~~~vi~lvG-~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~ 138 (429)
T TIGR01425 98 GKQNVIMFVG-LQGSGKTTTCTKLAYYYQRKGFKPCLVCADT 138 (429)
T ss_pred CCCeEEEEEC-CCCCCHHHHHHHHHHHHHHCCCCEEEEcCcc
Confidence 4466666655 5666778889999999999999999998754
No 266
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=24.66 E-value=2.7e+02 Score=31.14 Aligned_cols=102 Identities=7% Similarity=0.056 Sum_probs=59.7
Q ss_pred CCCCCCEEEEEeCCCCCChHHHHHHHHHHHHHHC--CCeEEEEEeCCCcchhhhhhcCceEEEeccc--------hhHHH
Q 002535 140 FGYRKPQLALVFPDLLIDPQQLQMVTIAIALREI--GYAIQVYSLEDGRAHEVWRNIGVPVAILQTG--------REKAS 209 (911)
Q Consensus 140 ~~~rkprIalI~~~L~~GGae~~v~~LAk~L~~~--GyeV~V~t~~~g~~~~~~~~~gi~v~~l~~~--------~~l~~ 209 (911)
+..+++||++....-... +..+..+.++. ..+|.++..+........+..|+++..++.. ..+..
T Consensus 89 ~~~~~~kiavl~Sg~g~n-----l~al~~~~~~~~l~~~i~~visn~~~~~~~A~~~gIp~~~~~~~~~~~~~~~~~~~~ 163 (289)
T PRK13010 89 PDGQRPKVVIMVSKFDHC-----LNDLLYRWRMGELDMDIVGIISNHPDLQPLAVQHDIPFHHLPVTPDTKAQQEAQILD 163 (289)
T ss_pred cCCCCeEEEEEEeCCCcc-----HHHHHHHHHCCCCCcEEEEEEECChhHHHHHHHcCCCEEEeCCCcccccchHHHHHH
Confidence 355678998877653221 33444544433 3566666666555666667889998765422 23455
Q ss_pred hhhhcCccEEEEcCcchhHHHHHHhhCCCCCCCEEEEEcCc
Q 002535 210 FVNWLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEG 250 (911)
Q Consensus 210 lI~~~kpDIIhvhs~~~~~~ia~L~~~~~~giPvV~tiH~~ 250 (911)
.++..++|+|++-..... .-..++.. +.+ -++.+|..
T Consensus 164 ~l~~~~~Dlivlagym~i-l~~~~l~~-~~~--~iiNiHpS 200 (289)
T PRK13010 164 LIETSGAELVVLARYMQV-LSDDLSRK-LSG--RAINIHHS 200 (289)
T ss_pred HHHHhCCCEEEEehhhhh-CCHHHHhh-ccC--CceeeCcc
Confidence 677889999998776552 22223322 221 26788864
No 267
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=24.22 E-value=3.7e+02 Score=29.94 Aligned_cols=101 Identities=7% Similarity=0.136 Sum_probs=59.8
Q ss_pred CCCCCEEEEEeCCCCCChHHHHHHHHHHHHHHC--CCeEEEEEeCCCcchhhhhhcCceEEEeccc--------hhHHHh
Q 002535 141 GYRKPQLALVFPDLLIDPQQLQMVTIAIALREI--GYAIQVYSLEDGRAHEVWRNIGVPVAILQTG--------REKASF 210 (911)
Q Consensus 141 ~~rkprIalI~~~L~~GGae~~v~~LAk~L~~~--GyeV~V~t~~~g~~~~~~~~~gi~v~~l~~~--------~~l~~l 210 (911)
.-+++|+++..+.-. . -+..+......- ..+|.++..+........+..|+++..++.. ..+...
T Consensus 81 ~~~~~ki~vl~Sg~g---~--nl~~l~~~~~~g~l~~~i~~visn~~~~~~~A~~~gIp~~~~~~~~~~~~~~e~~~~~~ 155 (280)
T TIGR00655 81 ADKLKRVAILVSKED---H--CLGDLLWRWYSGELDAEIALVISNHEDLRSLVERFGIPFHYIPATKDNRVEHEKRQLEL 155 (280)
T ss_pred CCCCcEEEEEEcCCC---h--hHHHHHHHHHcCCCCcEEEEEEEcChhHHHHHHHhCCCEEEcCCCCcchhhhHHHHHHH
Confidence 456789988776542 2 233455554433 3466666555555555677889998776642 234455
Q ss_pred hhhcCccEEEEcCcchhHHHHHHhhCCCCCCCEEEEEcCc
Q 002535 211 VNWLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEG 250 (911)
Q Consensus 211 I~~~kpDIIhvhs~~~~~~ia~L~~~~~~giPvV~tiH~~ 250 (911)
++..++|+|++...... +-..++.. +.+ -++.+|..
T Consensus 156 l~~~~~Dlivlagym~i-l~~~~l~~-~~~--~iINiHpS 191 (280)
T TIGR00655 156 LKQYQVDLVVLAKYMQI-LSPDFVKR-YPN--KIINIHHS 191 (280)
T ss_pred HHHhCCCEEEEeCchhh-CCHHHHhh-ccC--CEEEecCC
Confidence 77789999998876652 22233322 222 27788864
No 268
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=24.18 E-value=3.2e+02 Score=30.18 Aligned_cols=80 Identities=14% Similarity=0.154 Sum_probs=49.7
Q ss_pred CCEEEEEeCCCCCChHHHHHHHHHHHHHHC-C-CeEEEEEeCCCc------chhhhhhcCceEEEeccchhHHHhhhh-c
Q 002535 144 KPQLALVFPDLLIDPQQLQMVTIAIALREI-G-YAIQVYSLEDGR------AHEVWRNIGVPVAILQTGREKASFVNW-L 214 (911)
Q Consensus 144 kprIalI~~~L~~GGae~~v~~LAk~L~~~-G-yeV~V~t~~~g~------~~~~~~~~gi~v~~l~~~~~l~~lI~~-~ 214 (911)
++++..+++. ...|=...+..++..+... | +.|.+++..... +.......++++........+...+.. .
T Consensus 193 ~~~vi~~vGp-tGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~~~ 271 (282)
T TIGR03499 193 QGGVIALVGP-TGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALDRLR 271 (282)
T ss_pred CCeEEEEECC-CCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHHcc
Confidence 4556666654 5667777888999999876 5 999999876522 111123356666554443444444444 3
Q ss_pred CccEEEEcCc
Q 002535 215 NYDGILVNSL 224 (911)
Q Consensus 215 kpDIIhvhs~ 224 (911)
++|+|++.++
T Consensus 272 ~~d~vliDt~ 281 (282)
T TIGR03499 272 DKDLILIDTA 281 (282)
T ss_pred CCCEEEEeCC
Confidence 5898887653
No 269
>TIGR03837 efp_adjacent_2 conserved hypothetical protein, PP_1857 family. This model describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=24.17 E-value=5.9e+02 Score=29.62 Aligned_cols=108 Identities=20% Similarity=0.252 Sum_probs=66.6
Q ss_pred HHHHHhhCCC--CCCeEEEEEEeccccccccccHHHHHHHHHHhhhhcccCCCCCCCEEEEEEeCCCCCchHHHHHHHHH
Q 002535 322 DTVRVKMGFK--PDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILSGDSTSNYSVVIEAIAH 399 (911)
Q Consensus 322 ~~lR~~lgi~--~d~~vIL~VGsrl~~~KGiKg~dlLLeAl~~L~~~~p~~~~~~~~vkLvIVGG~~~e~Y~~~Le~la~ 399 (911)
..+..++|++ ++..+|..++ |. .-.+..+++++....+ .++++|-.|... ..+.+...
T Consensus 168 ~~~~~~lg~~~~~~~~~vSLF~----Ye--~~al~~ll~~~~~~~~----------pv~lLvp~Gr~~----~~v~~~l~ 227 (371)
T TIGR03837 168 RALLRRLGVGPEPDALLVSLFC----YE--NAALPALLDALAQSGS----------PVHLLVPEGRAL----AAVAAWLG 227 (371)
T ss_pred HHHHHHcCCCCCCCCeEEEEEe----cC--ChhHHHHHHHHHhCCC----------CeEEEecCCccH----HHHHHHhC
Confidence 3455677875 5666665555 32 0235556666654322 278888777554 33333221
Q ss_pred --------HcCCCCccEEEcccc--ccHHHHHHHcCeeEEcccCCcCCccHHHHHHHHcCCCEEecC
Q 002535 400 --------NLHYPLGVVKHMAAE--GDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPD 456 (911)
Q Consensus 400 --------~lgL~~~~V~flG~v--~dV~~~L~~ADVfVlPS~~E~qGFplvLLEAMA~G~PVIaTd 456 (911)
.....+-.+..+.++ ++..+++-.||+-+.-. |. +.+-|.-+|+|.|=.-
T Consensus 228 ~~~~~~g~~~~~g~L~~~~LPf~~Q~~yD~LLW~cD~NfVRG--ED-----SFVRAqWAgkPfvWhI 287 (371)
T TIGR03837 228 DALLAAGDVHRRGALTVAVLPFVPQDDYDRLLWACDLNFVRG--ED-----SFVRAQWAGKPFVWHI 287 (371)
T ss_pred ccccCCccccccCceEEEEcCCCChhhHHHHHHhChhcEeec--hh-----HHHHHHHcCCCceeec
Confidence 011112246777766 78999999999987654 54 7889999999987653
No 270
>PF11623 DUF3252: Protein of unknown function (DUF3252); InterPro: IPR021659 This family of proteins has no known function. Some members are annotated as Ssl0352 however this cannot be confirmed. Currently there is no known function. ; PDB: 3C4S_B 2JZ2_A.
Probab=23.78 E-value=46 Score=27.47 Aligned_cols=16 Identities=25% Similarity=0.513 Sum_probs=7.0
Q ss_pred hhcCCceeeeccCCcc
Q 002535 68 LFLPGSVTVMDESQGS 83 (911)
Q Consensus 68 ~~~~~~~~~~~~~~~~ 83 (911)
|.|||+.++|.+++.+
T Consensus 1 ~ilPG~~V~V~n~~~~ 16 (53)
T PF11623_consen 1 MILPGSTVRVKNPNDI 16 (53)
T ss_dssp ---TT-EEEE--TTST
T ss_pred CccCCCEEEEeCCCCc
Confidence 7899997667777444
No 271
>cd06284 PBP1_LacI_like_6 Ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group includes the ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors and are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=23.61 E-value=5.7e+02 Score=26.60 Aligned_cols=82 Identities=17% Similarity=0.173 Sum_probs=50.8
Q ss_pred EEEEeCCCCCChHHHHHHHHHHHHHHCCCeEEEEEeCCCcchhhhhhcCceEEEeccchhHHHhhhhcCccEEEEcCcch
Q 002535 147 LALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVNSLEA 226 (911)
Q Consensus 147 IalI~~~L~~GGae~~v~~LAk~L~~~GyeV~V~t~~~g~~~~~~~~~gi~v~~l~~~~~l~~lI~~~kpDIIhvhs~~~ 226 (911)
|++|++++...-.......+.+++++.||++.++....++.. . ......+...++|.+++.....
T Consensus 2 i~~v~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~-~--------------~~~~~~~~~~~vdgiii~~~~~ 66 (267)
T cd06284 2 ILVLVPDIANPFFSEILKGIEDEAREAGYGVLLGDTRSDPER-E--------------QEYLDLLRRKQADGIILLDGSL 66 (267)
T ss_pred EEEEECCCCCccHHHHHHHHHHHHHHcCCeEEEecCCCChHH-H--------------HHHHHHHHHcCCCEEEEecCCC
Confidence 678888887667777888888999999999987764432211 0 0112234556889888765443
Q ss_pred hHHHHHHhhCCCCCCCEEEE
Q 002535 227 KVVISNIMQEPFKSLPLVWT 246 (911)
Q Consensus 227 ~~~ia~L~~~~~~giPvV~t 246 (911)
........ ..++|+|..
T Consensus 67 ~~~~~~~~---~~~ipvv~~ 83 (267)
T cd06284 67 PPTALTAL---AKLPPIVQA 83 (267)
T ss_pred CHHHHHHH---hcCCCEEEE
Confidence 21211222 347898865
No 272
>cd06297 PBP1_LacI_like_12 Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs. Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=23.43 E-value=4.9e+02 Score=27.58 Aligned_cols=84 Identities=18% Similarity=0.151 Sum_probs=50.6
Q ss_pred EEEEeCCCCCChHHHHHHHHHHHHHHCCCeEEEEEeCCCcchhhhhhcCceEEEeccchhHHHhhhhcCccEEEEcCcch
Q 002535 147 LALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVNSLEA 226 (911)
Q Consensus 147 IalI~~~L~~GGae~~v~~LAk~L~~~GyeV~V~t~~~g~~~~~~~~~gi~v~~l~~~~~l~~lI~~~kpDIIhvhs~~~ 226 (911)
|+++++++...-....+..+.+.+.+.||++.+++..+.. . . ...+...+...++|.|++.....
T Consensus 2 Igvi~p~~~~~~~~~~~~~i~~~~~~~gy~~~~~~~~~~~-~-~-------------~~~~~~~l~~~~vdgvi~~~~~~ 66 (269)
T cd06297 2 ISVLLPVVATEFYRRLLEGIEGALLEQRYDLALFPLLSLA-R-L-------------KRYLESTTLAYLTDGLLLASYDL 66 (269)
T ss_pred EEEEeCCCcChhHHHHHHHHHHHHHHCCCEEEEEeCCCcH-H-H-------------HHHHHHHHHhcCCCEEEEecCcc
Confidence 6778887665455667788889999999999998754211 0 0 01112234556899888876433
Q ss_pred hHHHHHHhhCCCCCCCEEEEE
Q 002535 227 KVVISNIMQEPFKSLPLVWTI 247 (911)
Q Consensus 227 ~~~ia~L~~~~~~giPvV~ti 247 (911)
.......+ ...++|+|..-
T Consensus 67 ~~~~~~~l--~~~~iPvv~~~ 85 (269)
T cd06297 67 TERLAERR--LPTERPVVLVD 85 (269)
T ss_pred ChHHHHHH--hhcCCCEEEEc
Confidence 22222222 23578987653
No 273
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=23.31 E-value=3.4e+02 Score=31.05 Aligned_cols=129 Identities=14% Similarity=0.066 Sum_probs=68.4
Q ss_pred cCeeEEcccCCcCCccHHHHHHHHcCCCEEe-cCCCccccccccCccEEEEcCCC-HHHHHHHHHHHHHcCCCcHHHHHH
Q 002535 424 ADVVIYGSFLEEQTFPEILVKALCFRKPIIA-PDLSNIRKYVDDRVNGYLFPKEN-IKALTHIILQVITNGKISPFARNI 501 (911)
Q Consensus 424 ADVfVlPS~~E~qGFplvLLEAMA~G~PVIa-Td~gGi~EiV~dg~nGlLv~~~D-~eaLAeaI~~LLsd~~~p~~~~~m 501 (911)
=|++|+.....+ ..++.||--+|+|||+ .|.-..++.| -+.+|.+| .-.....|..++.+ . ..+
T Consensus 153 Pd~viv~d~~~e---~~AI~EA~kl~IPvIaivDTn~dp~~I-----dypIP~NDds~~si~li~~~la~---a-i~~-- 218 (326)
T PRK12311 153 PDLLFVIDTNKE---DIAIQEAQRLGIPVAAIVDTNCDPDGI-----TYPVPGNDDAGRAIALYCDLIAR---A-AID-- 218 (326)
T ss_pred CCEEEEeCCccc---hHHHHHHHHcCCCEEEEeeCCCCcccc-----ceeecCCCchHHHHHHHHHHHHH---H-HHH--
Confidence 466665543332 7899999999999998 3333334443 34565543 44455566666655 1 111
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHhcCCCCCCCCCcccccCchhhhhhhhhhhhhhhhcchhhhcccccchhhhhhh
Q 002535 502 ASIGRRSVKNLMALETIEGYAMLLENVLKLPSEVAFPKSIKELSPKLKEEWQWHLFEAFLNSTHEDRTSRSNRFLNQIEL 581 (911)
Q Consensus 502 g~~ar~~ae~Fs~e~ia~~y~~Lye~vL~~p~~~~~p~~~~~l~~~lk~~W~w~~F~~~~~~~~~~~~~~~~~i~~~~~~ 581 (911)
|+. .+-.. .... ++. ...|. . .+++++.-..|+|...++.. .--+...+..||-.++|+
T Consensus 219 ---g~~--~~~~~--~~~~----~~~-~~~p~-----a--~~~~~~~~~~~e~~~l~ap~--~~~DdL~~I~GiGp~~e~ 277 (326)
T PRK12311 219 ---GIS--RAQGD--LGID----IGA-SEAPL-----A--EELPAAAAPVETFEGLAGPR--GAPDDLKKLTGVSPQIEK 277 (326)
T ss_pred ---HHh--hcccc--cccc----ccc-ccccc-----c--ccccccccchhhhhhhcCCc--cCchhhhhhccCChhhhh
Confidence 111 00000 0000 000 01111 1 12222222558999988774 344677788999999999
Q ss_pred hcccccc
Q 002535 582 LQSNHTE 588 (911)
Q Consensus 582 ~~~~~~~ 588 (911)
.++...
T Consensus 278 -~L~~~G 283 (326)
T PRK12311 278 -KLNDLG 283 (326)
T ss_pred -hhhhcC
Confidence 886443
No 274
>cd06354 PBP1_BmpA_PnrA_like Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. The PnrA lipoprotein, also known as Tp0319 or TmpC, represents a novel family of bacterial purine nucleoside receptor encoded within an ATP-binding cassette (ABC) transport system (pnrABCDE). It shows a striking structural similarity to another basic membrane lipoprotein Med which regulates the competence transcription factor gene, comK, in Bacillus subtilis. The members of PnrA-like subgroup are likely to have similar nucleoside-binding functions and a similar type I periplasmic sugar-binding protein-like fold.
Probab=23.11 E-value=5e+02 Score=27.74 Aligned_cols=84 Identities=12% Similarity=0.050 Sum_probs=49.7
Q ss_pred EEEEEeCC---CCCChHHHHHHHHHHHHHHCCCeEEEEEeCCCcchhhhhhcCceEEEeccchhHHHhhhhcCccEEEEc
Q 002535 146 QLALVFPD---LLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVN 222 (911)
Q Consensus 146 rIalI~~~---L~~GGae~~v~~LAk~L~~~GyeV~V~t~~~g~~~~~~~~~gi~v~~l~~~~~l~~lI~~~kpDIIhvh 222 (911)
+|+++.|. +...-...++..+.+.+++.||++.+....+ + . ... .....+...++|.|++.
T Consensus 1 ~I~~i~~~~~~~~~~f~~~~~~gi~~~~~~~gy~~~i~~~~~-~-~-~~~-------------~~i~~l~~~~vdgiI~~ 64 (265)
T cd06354 1 KVALVTDVGGLGDKSFNQSAWEGLERAAKELGIEYKYVESKS-D-A-DYE-------------PNLEQLADAGYDLIVGV 64 (265)
T ss_pred CEEEEeCCCCcCchhHHHHHHHHHHHHHHHcCCeEEEEecCC-H-H-HHH-------------HHHHHHHhCCCCEEEEc
Confidence 47788876 4555566777788899999999999975432 1 1 000 11223455789999987
Q ss_pred CcchhHHHHHHhhCCCCCCCEEEE
Q 002535 223 SLEAKVVISNIMQEPFKSLPLVWT 246 (911)
Q Consensus 223 s~~~~~~ia~L~~~~~~giPvV~t 246 (911)
+............ ...++|+|..
T Consensus 65 ~~~~~~~~~~~~~-~~~~~PiV~i 87 (265)
T cd06354 65 GFLLADALKEVAK-QYPDQKFAII 87 (265)
T ss_pred CcchHHHHHHHHH-HCCCCEEEEE
Confidence 5442222222332 1346787754
No 275
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=22.93 E-value=5.7e+02 Score=26.62 Aligned_cols=82 Identities=16% Similarity=0.127 Sum_probs=50.4
Q ss_pred EEEEeCCCCCChHHHHHHHHHHHHHHCCCeEEEEEeCCCcchhhhhhcCceEEEeccchhHHHhhhhcCccEEEEcCcch
Q 002535 147 LALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVNSLEA 226 (911)
Q Consensus 147 IalI~~~L~~GGae~~v~~LAk~L~~~GyeV~V~t~~~g~~~~~~~~~gi~v~~l~~~~~l~~lI~~~kpDIIhvhs~~~ 226 (911)
|++|.++........+...+.+.+.+.||++.++........ . ......+...++|.|++.....
T Consensus 2 Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~-~--------------~~~~~~l~~~~vdgiii~~~~~ 66 (268)
T cd01575 2 VAVLVPSLSNSVFADVLQGISDVLEAAGYQLLLGNTGYSPER-E--------------EELLRTLLSRRPAGLILTGLEH 66 (268)
T ss_pred EEEEeCCCcchhHHHHHHHHHHHHHHcCCEEEEecCCCCchh-H--------------HHHHHHHHHcCCCEEEEeCCCC
Confidence 678888877666777778888999999999988664322111 0 0112223446789888766443
Q ss_pred h-HHHHHHhhCCCCCCCEEEE
Q 002535 227 K-VVISNIMQEPFKSLPLVWT 246 (911)
Q Consensus 227 ~-~~ia~L~~~~~~giPvV~t 246 (911)
. ..+..+. ..++|+|..
T Consensus 67 ~~~~~~~~~---~~~ipvv~~ 84 (268)
T cd01575 67 TERTRQLLR---AAGIPVVEI 84 (268)
T ss_pred CHHHHHHHH---hcCCCEEEE
Confidence 2 1222222 347898864
No 276
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=22.70 E-value=3e+02 Score=30.32 Aligned_cols=69 Identities=14% Similarity=0.142 Sum_probs=45.1
Q ss_pred EEEEEEeCCCCCchHHHHHHHHHHcCCCCccEEEccccccHHHHHHHcCeeEEcccCCcCCccHHHHHHHHcCCCEEecC
Q 002535 377 IKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPD 456 (911)
Q Consensus 377 vkLvIVGG~~~e~Y~~~Le~la~~lgL~~~~V~flG~v~dV~~~L~~ADVfVlPS~~E~qGFplvLLEAMA~G~PVIaTd 456 (911)
++++.+..... +..++.+++++... ...++.+++..+|+++..+... ...-...+++..|++|++..
T Consensus 32 ~el~aV~dr~~----~~a~~~a~~~g~~~-------~~~~~eell~~~D~Vvi~tp~~--~h~e~~~~aL~aGk~Vi~~s 98 (271)
T PRK13302 32 LTLSAVAVRDP----QRHADFIWGLRRPP-------PVVPLDQLATHADIVVEAAPAS--VLRAIVEPVLAAGKKAIVLS 98 (271)
T ss_pred eEEEEEECCCH----HHHHHHHHhcCCCc-------ccCCHHHHhcCCCEEEECCCcH--HHHHHHHHHHHcCCcEEEec
Confidence 67765654433 44566666555322 1246777788899999877544 24556688899999998754
Q ss_pred CC
Q 002535 457 LS 458 (911)
Q Consensus 457 ~g 458 (911)
.+
T Consensus 99 ~g 100 (271)
T PRK13302 99 VG 100 (271)
T ss_pred ch
Confidence 44
No 277
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=22.54 E-value=2e+02 Score=29.41 Aligned_cols=51 Identities=18% Similarity=0.155 Sum_probs=34.5
Q ss_pred CEEEEEEe-CCC-CCchHHHHHHHHHHcCCCCccEEEcccc-ccHHHHHHHcCeeEEcccC
Q 002535 376 PIKVMILS-GDS-TSNYSVVIEAIAHNLHYPLGVVKHMAAE-GDVDSVLNTADVVIYGSFL 433 (911)
Q Consensus 376 ~vkLvIVG-G~~-~e~Y~~~Le~la~~lgL~~~~V~flG~v-~dV~~~L~~ADVfVlPS~~ 433 (911)
+-+++|+| |.. . ..+-+...+.+. +|...... +++.+.+..||++|..+..
T Consensus 44 gk~vlViG~G~~~G----~~~a~~L~~~g~---~V~v~~r~~~~l~~~l~~aDiVIsat~~ 97 (168)
T cd01080 44 GKKVVVVGRSNIVG----KPLAALLLNRNA---TVTVCHSKTKNLKEHTKQADIVIVAVGK 97 (168)
T ss_pred CCEEEEECCcHHHH----HHHHHHHhhCCC---EEEEEECCchhHHHHHhhCCEEEEcCCC
Confidence 36999999 753 3 223333333343 36666655 7899999999999988743
No 278
>PF01506 HCV_NS5a: Hepatitis C virus non-structural 5a protein membrane anchor; InterPro: IPR002868 The molecular function of the non-structural 5a viral protein is uncertain. The NS5a protein is phosphorylated when expressed in mammalian cells. It is thought to interact with the dsRNA-dependent (interferon inducible) kinase PKR, P19525 from SWISSPROT [, ].; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0004252 serine-type endopeptidase activity, 0017111 nucleoside-triphosphatase activity; PDB: 1R7F_A 1R7E_A 1R7C_A 1R7G_A 1R7D_A.
Probab=22.36 E-value=85 Score=21.77 Aligned_cols=15 Identities=27% Similarity=0.448 Sum_probs=12.3
Q ss_pred hhHHHHHHHHHHHHH
Q 002535 48 DYLLWICTVAVFLFF 62 (911)
Q Consensus 48 ~~~~~~~~~~~~~~~ 62 (911)
|-.+|+|++...|+-
T Consensus 6 diWdWvc~~l~~~~~ 20 (23)
T PF01506_consen 6 DIWDWVCRVLRDFKT 20 (23)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 678999999988753
No 279
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=21.85 E-value=3.4e+02 Score=31.16 Aligned_cols=127 Identities=15% Similarity=0.140 Sum_probs=68.4
Q ss_pred CeEEEEEEeccccccccccHHHHHHHHHHhhhhcccCCCCCCCEEEEEEeCCCCCchHHHHHHHHHHcCCCCccEEEccc
Q 002535 334 DLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAA 413 (911)
Q Consensus 334 ~~vIL~VGsrl~~~KGiKg~dlLLeAl~~L~~~~p~~~~~~~~vkLvIVGG~~~e~Y~~~Le~la~~lgL~~~~V~flG~ 413 (911)
+..++.+|..+ . +.+ ++++..+.. + ++++-+..... +..+++++++|++-
T Consensus 3 ~~rVgViG~~~--G---~~h---~~al~~~~~---~-------~eLvaV~d~~~----erA~~~A~~~gi~~-------- 52 (343)
T TIGR01761 3 VQSVVVCGTRF--G---QFY---LAAFAAAPE---R-------FELAGILAQGS----ERSRALAHRLGVPL-------- 52 (343)
T ss_pred CcEEEEEeHHH--H---HHH---HHHHHhCCC---C-------cEEEEEEcCCH----HHHHHHHHHhCCCc--------
Confidence 45788888422 1 333 666655421 2 56655554443 66778888777531
Q ss_pred cccHHHHHHHcCe--eEEcccCCcCCc-cHHHHHHHHcCCCEEecCCCc---ccccccc-CccEEEEcCCCHHHHHHHHH
Q 002535 414 EGDVDSVLNTADV--VIYGSFLEEQTF-PEILVKALCFRKPIIAPDLSN---IRKYVDD-RVNGYLFPKENIKALTHIIL 486 (911)
Q Consensus 414 v~dV~~~L~~ADV--fVlPS~~E~qGF-plvLLEAMA~G~PVIaTd~gG---i~EiV~d-g~nGlLv~~~D~eaLAeaI~ 486 (911)
-.++.+++...|+ ++.|+.... +. .-...+||..|+.|++=.--+ ..+++.- ..+|..+-.+.-.-...++.
T Consensus 53 y~~~eell~d~Di~~V~ipt~~P~-~~H~e~a~~aL~aGkHVL~EKPla~~Ea~el~~~A~~~g~~l~v~~f~p~~~~vr 131 (343)
T TIGR01761 53 YCEVEELPDDIDIACVVVRSAIVG-GQGSALARALLARGIHVLQEHPLHPRDIQDLLRLAERQGRRYLVNTFYPHLPAVR 131 (343)
T ss_pred cCCHHHHhcCCCEEEEEeCCCCCC-ccHHHHHHHHHhCCCeEEEcCCCCHHHHHHHHHHHHHcCCEEEEEecCHHHHHHH
Confidence 2467777765555 444442111 11 346678999999999843211 2233310 11233322233455666777
Q ss_pred HHHHc
Q 002535 487 QVITN 491 (911)
Q Consensus 487 ~LLsd 491 (911)
+++++
T Consensus 132 ~~i~~ 136 (343)
T TIGR01761 132 RFIEY 136 (343)
T ss_pred HHHHc
Confidence 77776
No 280
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=21.66 E-value=4e+02 Score=28.46 Aligned_cols=80 Identities=10% Similarity=0.008 Sum_probs=51.0
Q ss_pred HHHHHHhhhhcccCCCCCCCEEEEEEeCCCCCchHHHHHHHHHHcCCCCccEEEccccccHHHHHHHcCeeEEcccCCcC
Q 002535 357 LRALLPLFSEVSVENESNSPIKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNTADVVIYGSFLEEQ 436 (911)
Q Consensus 357 LeAl~~L~~~~p~~~~~~~~vkLvIVGG~~~e~Y~~~Le~la~~lgL~~~~V~flG~v~dV~~~L~~ADVfVlPS~~E~q 436 (911)
+++++.+.+++|+ .++-+|.-.. . ++. +.+.+.|-+- +.-.+...++.+.-...++.++|.-..
T Consensus 54 ~~~I~~l~~~~p~--------~~IGAGTVl~-~--~~a-~~a~~aGA~F--ivsP~~~~~vi~~a~~~~i~~iPG~~T-- 117 (212)
T PRK05718 54 LEAIRLIAKEVPE--------ALIGAGTVLN-P--EQL-AQAIEAGAQF--IVSPGLTPPLLKAAQEGPIPLIPGVST-- 117 (212)
T ss_pred HHHHHHHHHHCCC--------CEEEEeeccC-H--HHH-HHHHHcCCCE--EECCCCCHHHHHHHHHcCCCEeCCCCC--
Confidence 6777888877775 3333332222 1 222 3344445542 555566678888888889999887544
Q ss_pred CccHHHHHHHHcCCCEEe
Q 002535 437 TFPEILVKALCFRKPIIA 454 (911)
Q Consensus 437 GFplvLLEAMA~G~PVIa 454 (911)
|.-+.+|+.+|..+|-
T Consensus 118 --ptEi~~a~~~Ga~~vK 133 (212)
T PRK05718 118 --PSELMLGMELGLRTFK 133 (212)
T ss_pred --HHHHHHHHHCCCCEEE
Confidence 5568889999988764
No 281
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=21.44 E-value=1e+03 Score=25.59 Aligned_cols=76 Identities=13% Similarity=0.044 Sum_probs=39.5
Q ss_pred EEEEEEeCCCCCchHHHHHHHHHHcCCCCccEEEccccccHHHHHHHcCeeEEcccCCcCCcc-HHHHHHHHcCCCEEec
Q 002535 377 IKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFP-EILVKALCFRKPIIAP 455 (911)
Q Consensus 377 vkLvIVGG~~~e~Y~~~Le~la~~lgL~~~~V~flG~v~dV~~~L~~ADVfVlPS~~E~qGFp-lvLLEAMA~G~PVIaT 455 (911)
.++.++..... +.++++++. +.|++....- -...+..+++++..+.-++ .- .+.-+|-+.|++|.+.
T Consensus 49 A~VtVVap~i~----~el~~l~~~-----~~i~~~~r~~-~~~dl~g~~LViaATdD~~--vN~~I~~~a~~~~~lvn~v 116 (223)
T PRK05562 49 CYVYILSKKFS----KEFLDLKKY-----GNLKLIKGNY-DKEFIKDKHLIVIATDDEK--LNNKIRKHCDRLYKLYIDC 116 (223)
T ss_pred CEEEEEcCCCC----HHHHHHHhC-----CCEEEEeCCC-ChHHhCCCcEEEECCCCHH--HHHHHHHHHHHcCCeEEEc
Confidence 45666653333 455555441 1344443110 1234567787777664332 33 3444556779999887
Q ss_pred CCCcccccc
Q 002535 456 DLSNIRKYV 464 (911)
Q Consensus 456 d~gGi~EiV 464 (911)
+.+...+++
T Consensus 117 d~p~~~dFi 125 (223)
T PRK05562 117 SDYKKGLCI 125 (223)
T ss_pred CCcccCeEE
Confidence 766544443
No 282
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=21.34 E-value=4.6e+02 Score=27.77 Aligned_cols=38 Identities=13% Similarity=0.006 Sum_probs=29.8
Q ss_pred EEEEEeCCC-CCChHHHHHHHHHHHHHHCCCeEEEEEeC
Q 002535 146 QLALVFPDL-LIDPQQLQMVTIAIALREIGYAIQVYSLE 183 (911)
Q Consensus 146 rIalI~~~L-~~GGae~~v~~LAk~L~~~GyeV~V~t~~ 183 (911)
+|+++.+.. ...-....+..+.+.+.+.|+++.+....
T Consensus 1 ~i~~i~~~~~~~~~~~~~~~g~~~~~~~~g~~v~~~~~~ 39 (271)
T cd06312 1 KIAFVTHGPAGDPFWTVVKNGAEDAAKDLGVDVEYRGPE 39 (271)
T ss_pred CEEEecCCCCCCcHHHHHHHHHHHHHHHhCCEEEEECCC
Confidence 478888877 56666777778888899999999887654
No 283
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=21.31 E-value=4.2e+02 Score=29.08 Aligned_cols=85 Identities=16% Similarity=0.139 Sum_probs=52.6
Q ss_pred HHHHcCCCCccEEEc-ccc--ccHHHHHHHc--CeeEEcccCCcCCccHHHHHHHHcCCCEEecCCCccccccccCccEE
Q 002535 397 IAHNLHYPLGVVKHM-AAE--GDVDSVLNTA--DVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSNIRKYVDDRVNGY 471 (911)
Q Consensus 397 la~~lgL~~~~V~fl-G~v--~dV~~~L~~A--DVfVlPS~~E~qGFplvLLEAMA~G~PVIaTd~gGi~EiV~dg~nGl 471 (911)
.+.++|++..++... |+- +.=..+++.. |++|.--.-+..|+.-++--|+.+|+|||.-+.+..+. + +.
T Consensus 166 ~~~~~G~~~~~iia~~gPfs~e~n~al~~~~~i~~lVtK~SG~~Gg~~eKi~AA~~lgi~vivI~RP~~~~----~--~~ 239 (256)
T TIGR00715 166 QALKLGFPSDRIIAMRGPFSEELEKALLREYRIDAVVTKASGEQGGELEKVKAAEALGINVIRIARPQTIP----G--VA 239 (256)
T ss_pred HHHHcCCChhcEEEEeCCCCHHHHHHHHHHcCCCEEEEcCCCCccchHHHHHHHHHcCCcEEEEeCCCCCC----C--Cc
Confidence 567778876565554 433 3335667655 45554322222267889999999999999987774321 1 11
Q ss_pred EEcCCCHHHHHHHHHHHH
Q 002535 472 LFPKENIKALTHIILQVI 489 (911)
Q Consensus 472 Lv~~~D~eaLAeaI~~LL 489 (911)
.+ .+.+++.+.+.+++
T Consensus 240 ~~--~~~~el~~~l~~~~ 255 (256)
T TIGR00715 240 IF--DDISQLNQFVARLL 255 (256)
T ss_pred cC--CCHHHHHHHHHHhc
Confidence 22 47888888777654
No 284
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=21.27 E-value=3.8e+02 Score=31.52 Aligned_cols=86 Identities=13% Similarity=0.150 Sum_probs=53.1
Q ss_pred CCCCCCEEEEEeCCCCCChHHHHHHHHHHHHHHCCCeEEEEEeCCCcc--hhh----hhhcCceEEEeccchhHHHhhhh
Q 002535 140 FGYRKPQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRA--HEV----WRNIGVPVAILQTGREKASFVNW 213 (911)
Q Consensus 140 ~~~rkprIalI~~~L~~GGae~~v~~LAk~L~~~GyeV~V~t~~~g~~--~~~----~~~~gi~v~~l~~~~~l~~lI~~ 213 (911)
+...++++..+++. ...|=...+..++..+...|+.|.+++...... ... .+..++++........+...++.
T Consensus 201 ~~~~~~~ii~lvGp-tGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~ 279 (407)
T PRK12726 201 FDLSNHRIISLIGQ-TGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQY 279 (407)
T ss_pred ceecCCeEEEEECC-CCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHH
Confidence 34566777777764 466777788889988989999999998765321 122 23456665544333333333332
Q ss_pred ----cCccEEEEcCcch
Q 002535 214 ----LNYDGILVNSLEA 226 (911)
Q Consensus 214 ----~kpDIIhvhs~~~ 226 (911)
.++|+|++.+.-.
T Consensus 280 l~~~~~~D~VLIDTAGr 296 (407)
T PRK12726 280 MTYVNCVDHILIDTVGR 296 (407)
T ss_pred HHhcCCCCEEEEECCCC
Confidence 3578888776543
No 285
>PRK10653 D-ribose transporter subunit RbsB; Provisional
Probab=21.19 E-value=5.6e+02 Score=27.66 Aligned_cols=46 Identities=17% Similarity=0.077 Sum_probs=35.7
Q ss_pred ccCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHHHCCCeEEEEEe
Q 002535 137 LHRFGYRKPQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSL 182 (911)
Q Consensus 137 ~~r~~~rkprIalI~~~L~~GGae~~v~~LAk~L~~~GyeV~V~t~ 182 (911)
++.....+..|+++.+++...-....+..+.+.+.+.|+++.++..
T Consensus 19 ~~~~~~~~~~I~vi~~~~~~~f~~~~~~~i~~~~~~~G~~~~~~~~ 64 (295)
T PRK10653 19 VSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDS 64 (295)
T ss_pred cCCccccCCeEEEEecCCCChHHHHHHHHHHHHHHHcCCeEEEecC
Confidence 3444456678899999887666777888888999999999988654
No 286
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=21.14 E-value=1.6e+02 Score=27.90 Aligned_cols=73 Identities=12% Similarity=0.106 Sum_probs=45.8
Q ss_pred EEEEe-CCCCCchHHHHHHHHHHcCCCCccEEEccccccHHHHHH--HcCeeEEcccCCcCCccHHHHHHH--HcCCCEE
Q 002535 379 VMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLN--TADVVIYGSFLEEQTFPEILVKAL--CFRKPII 453 (911)
Q Consensus 379 LvIVG-G~~~e~Y~~~Le~la~~lgL~~~~V~flG~v~dV~~~L~--~ADVfVlPS~~E~qGFplvLLEAM--A~G~PVI 453 (911)
++++| |-..+-....+++.+++.|++- .|...+. .++..... .+|++++..... |=..=++.. ..|+||.
T Consensus 5 LlvCg~G~STSlla~k~k~~~~e~gi~~-~i~a~~~-~e~~~~~~~~~~DvIll~PQi~---~~~~~i~~~~~~~~ipv~ 79 (104)
T PRK09590 5 LIICAAGMSSSMMAKKTTEYLKEQGKDI-EVDAITA-TEGEKAIAAAEYDLYLVSPQTK---MYFKQFEEAGAKVGKPVV 79 (104)
T ss_pred EEECCCchHHHHHHHHHHHHHHHCCCce-EEEEecH-HHHHHhhccCCCCEEEEChHHH---HHHHHHHHHhhhcCCCEE
Confidence 45556 7655555667788888888864 4444443 46666654 589999886332 233334444 4789998
Q ss_pred ecC
Q 002535 454 APD 456 (911)
Q Consensus 454 aTd 456 (911)
+-+
T Consensus 80 ~I~ 82 (104)
T PRK09590 80 QIP 82 (104)
T ss_pred EeC
Confidence 754
No 287
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=21.10 E-value=3.6e+02 Score=30.11 Aligned_cols=38 Identities=29% Similarity=0.338 Sum_probs=27.9
Q ss_pred cHHHHHH--HcCeeEEcccCCcCCccHHHHHHHH--cCCCEEe
Q 002535 416 DVDSVLN--TADVVIYGSFLEEQTFPEILVKALC--FRKPIIA 454 (911)
Q Consensus 416 dV~~~L~--~ADVfVlPS~~E~qGFplvLLEAMA--~G~PVIa 454 (911)
++.+.+. .+|++|=.|...+ -|.--++++|+ +..|+|-
T Consensus 96 ~L~e~i~~v~ptvlIG~S~~~g-~ft~evv~~Ma~~~~~PIIF 137 (279)
T cd05312 96 SLLEVVKAVKPTVLIGLSGVGG-AFTEEVVRAMAKSNERPIIF 137 (279)
T ss_pred CHHHHHHhcCCCEEEEeCCCCC-CCCHHHHHHHHhcCCCCEEE
Confidence 4666677 7789998875433 48888999998 5778775
No 288
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=21.05 E-value=7.7e+02 Score=25.60 Aligned_cols=84 Identities=15% Similarity=0.119 Sum_probs=49.1
Q ss_pred EEEEeCCCCCChHHHHHHHHHHHHHHCCCeEEEEEeCCCcchhhhhhcCceEEEeccchhHHHhhhhcCccEEEEcCcch
Q 002535 147 LALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVNSLEA 226 (911)
Q Consensus 147 IalI~~~L~~GGae~~v~~LAk~L~~~GyeV~V~t~~~g~~~~~~~~~gi~v~~l~~~~~l~~lI~~~kpDIIhvhs~~~ 226 (911)
|+++.++...--...++..+.+++.+.||++.++.....+.. .. ..+.. +...++|.+++.....
T Consensus 2 igvv~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~-~~-------------~~i~~-l~~~~~dgii~~~~~~ 66 (259)
T cd01542 2 IGVIVPRLDSFSTSRTVKGILAALYENGYQMLLMNTNFSIEK-EI-------------EALEL-LARQKVDGIILLATTI 66 (259)
T ss_pred eEEEecCCccchHHHHHHHHHHHHHHCCCEEEEEeCCCCHHH-HH-------------HHHHH-HHhcCCCEEEEeCCCC
Confidence 577888776555567777888889999999988765432211 00 11122 3346889888765432
Q ss_pred hHHHHHHhhCCCCCCCEEEEE
Q 002535 227 KVVISNIMQEPFKSLPLVWTI 247 (911)
Q Consensus 227 ~~~ia~L~~~~~~giPvV~ti 247 (911)
.......+ ...++|+|..-
T Consensus 67 ~~~~~~~~--~~~~ipvv~~~ 85 (259)
T cd01542 67 TDEHREAI--KKLNVPVVVVG 85 (259)
T ss_pred CHHHHHHH--hcCCCCEEEEe
Confidence 11222222 13468888653
No 289
>PRK09739 hypothetical protein; Provisional
Probab=21.02 E-value=4.2e+02 Score=27.46 Aligned_cols=41 Identities=17% Similarity=0.110 Sum_probs=32.1
Q ss_pred CCEEEEEeCCCCCChH-HHHHHHHHHHHHHCCCeEEEEEeCC
Q 002535 144 KPQLALVFPDLLIDPQ-QLQMVTIAIALREIGYAIQVYSLED 184 (911)
Q Consensus 144 kprIalI~~~L~~GGa-e~~v~~LAk~L~~~GyeV~V~t~~~ 184 (911)
.++|++|.++...++. ...+..+++.+.+.|++|+++...+
T Consensus 3 mmkiliI~~sp~~~s~s~~l~~~~~~~~~~~g~~v~~~dL~~ 44 (199)
T PRK09739 3 SMRIYLVWAHPRHDSLTAKVAEAIHQRAQERGHQVEELDLYR 44 (199)
T ss_pred CceEEEEEcCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEhhh
Confidence 3689999998877664 4556667788999999999987654
No 290
>PRK10936 TMAO reductase system periplasmic protein TorT; Provisional
Probab=20.95 E-value=6e+02 Score=28.48 Aligned_cols=89 Identities=10% Similarity=0.106 Sum_probs=52.5
Q ss_pred CCCEEEEEeCCCCCChHHHHHHHHHHHHHHCCCeEEEEEeCCC-cchhhhhhcCceEEEeccchhHHHhhhhcCccEEEE
Q 002535 143 RKPQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDG-RAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILV 221 (911)
Q Consensus 143 rkprIalI~~~L~~GGae~~v~~LAk~L~~~GyeV~V~t~~~g-~~~~~~~~~gi~v~~l~~~~~l~~lI~~~kpDIIhv 221 (911)
+..+|++|.++............+.+.+.+.||++.+...... ...... ..+.. +...++|.|++
T Consensus 45 ~t~~Igvv~p~~~~~f~~~~~~gi~~aa~~~G~~l~i~~~~~~~~~~~q~-------------~~i~~-l~~~~vdgIIl 110 (343)
T PRK10936 45 KAWKLCALYPHLKDSYWLSVNYGMVEEAKRLGVDLKVLEAGGYYNLAKQQ-------------QQLEQ-CVAWGADAILL 110 (343)
T ss_pred CCeEEEEEecCCCchHHHHHHHHHHHHHHHhCCEEEEEcCCCCCCHHHHH-------------HHHHH-HHHhCCCEEEE
Confidence 3578899999877666666777788889999999988764321 111110 11122 23357998887
Q ss_pred cCcchhHHHHHHhhCCCCCCCEEEE
Q 002535 222 NSLEAKVVISNIMQEPFKSLPLVWT 246 (911)
Q Consensus 222 hs~~~~~~ia~L~~~~~~giPvV~t 246 (911)
...........+ .....++|+|..
T Consensus 111 ~~~~~~~~~~~l-~~~~~giPvV~~ 134 (343)
T PRK10936 111 GAVTPDGLNPDL-ELQAANIPVIAL 134 (343)
T ss_pred eCCChHHhHHHH-HHHHCCCCEEEe
Confidence 654432211222 112457898743
No 291
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=20.93 E-value=1.3e+03 Score=26.58 Aligned_cols=120 Identities=13% Similarity=0.164 Sum_probs=69.6
Q ss_pred cccHHHHHHHHHHhhhhcccCCCCCCCEEEEEEeCCCCCchHHHHHHHHHHcCCCCccEEEccc--cccHHHHHHHcCee
Q 002535 350 WLEHALILRALLPLFSEVSVENESNSPIKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAA--EGDVDSVLNTADVV 427 (911)
Q Consensus 350 iKg~dlLLeAl~~L~~~~p~~~~~~~~vkLvIVGG~~~e~Y~~~Le~la~~lgL~~~~V~flG~--v~dV~~~L~~ADVf 427 (911)
..|++..++|+......... .....+-.+.|+|+........+++++.+++|+.- +..+.+. .+|+.. +..|.+-
T Consensus 135 ~~G~~~a~~al~~~l~~~~~-~~~~~~~~VNiig~~~~~~d~~el~~lL~~~Gi~~-~~~~~~~~~~~~i~~-~~~A~~n 211 (406)
T cd01967 135 SLGHHIANDAILDHLVGTKE-PEEKTPYDVNIIGEYNIGGDAWVIKPLLEELGIRV-NATFTGDGTVDELRR-AHRAKLN 211 (406)
T ss_pred cHHHHHHHHHHHHHhcCCCC-cCCCCCCeEEEEeccccchhHHHHHHHHHHcCCEE-EEEeCCCCCHHHHhh-CccCCEE
Confidence 36788788887654322110 00112347888884222223478999999999987 5666643 266665 5556655
Q ss_pred EEcccCCcCCccHHHHHHH--HcCCCEEecCCCccccccccCccEEEEcCCCHHHHHHHHHHHHHc
Q 002535 428 IYGSFLEEQTFPEILVKAL--CFRKPIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITN 491 (911)
Q Consensus 428 VlPS~~E~qGFplvLLEAM--A~G~PVIaTd~gGi~EiV~dg~nGlLv~~~D~eaLAeaI~~LLsd 491 (911)
|..+.. ++..+.+.| .+|+|.+...- +...+.+++.+.|.+++..
T Consensus 212 iv~~~~----~~~~~a~~L~~r~GiP~~~~~p---------------~G~~~t~~~l~~l~~~lg~ 258 (406)
T cd01967 212 LVHCSR----SMNYLAREMEERYGIPYMEVNF---------------YGFEDTSESLRKIAKFFGD 258 (406)
T ss_pred EEEChH----HHHHHHHHHHHhhCCCEEEecC---------------CcHHHHHHHHHHHHHHhCC
Confidence 544321 345555555 37999875321 1123677777888777765
No 292
>cd06316 PBP1_ABC_sugar_binding_like_7 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=20.90 E-value=3.6e+02 Score=29.04 Aligned_cols=36 Identities=14% Similarity=0.088 Sum_probs=26.2
Q ss_pred EEEEEeCCCCCChHHHHHHHHHHHHHHCCCeEEEEE
Q 002535 146 QLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYS 181 (911)
Q Consensus 146 rIalI~~~L~~GGae~~v~~LAk~L~~~GyeV~V~t 181 (911)
+|++|.++....-...++..+.+.+.+.|+++.++.
T Consensus 1 ~i~~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~ 36 (294)
T cd06316 1 KAAIVMHTSGSDWSNAQVRGAKDEFAKLGIEVVATT 36 (294)
T ss_pred CeEEEecCCCChHHHHHHHHHHHHHHHcCCEEEEec
Confidence 477888876644445566677888999999997553
No 293
>PRK09701 D-allose transporter subunit; Provisional
Probab=20.76 E-value=5.9e+02 Score=27.95 Aligned_cols=40 Identities=13% Similarity=0.174 Sum_probs=32.2
Q ss_pred CCCCEEEEEeCCCCCChHHHHHHHHHHHHHHCCCeEEEEE
Q 002535 142 YRKPQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYS 181 (911)
Q Consensus 142 ~rkprIalI~~~L~~GGae~~v~~LAk~L~~~GyeV~V~t 181 (911)
.+...|++|.+++...-.......+.+.+.+.|+++.++.
T Consensus 22 ~~~~~Igvi~~~~~~~f~~~~~~gi~~~a~~~g~~v~~~~ 61 (311)
T PRK09701 22 FAAAEYAVVLKTLSNPFWVDMKKGIEDEAKTLGVSVDIFA 61 (311)
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHHHHHHcCCeEEEec
Confidence 3456899999988766677777888888999999998874
No 294
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=20.72 E-value=2.8e+02 Score=30.53 Aligned_cols=43 Identities=16% Similarity=0.098 Sum_probs=30.6
Q ss_pred CCCCCEEEEEeCCCCCCh-H-HHHHHHHHHHHHHCCCeEEEEEeC
Q 002535 141 GYRKPQLALVFPDLLIDP-Q-QLQMVTIAIALREIGYAIQVYSLE 183 (911)
Q Consensus 141 ~~rkprIalI~~~L~~GG-a-e~~v~~LAk~L~~~GyeV~V~t~~ 183 (911)
+.++.+|++++++.+.-- . -.....+.++|.+.||+|.++...
T Consensus 1 ~~~~~~v~~~~g~~~~~~~~~~~s~~~i~~al~~~g~~v~~i~~~ 45 (304)
T PRK01372 1 PKMFGKVAVLMGGTSAEREVSLNSGAAVLAALREAGYDAHPIDPG 45 (304)
T ss_pred CCCCcEEEEEeCCCCCCceEeHHhHHHHHHHHHHCCCEEEEEecC
Confidence 357789999996654321 1 123478899999999999998644
No 295
>cd06293 PBP1_LacI_like_11 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=20.57 E-value=5e+02 Score=27.34 Aligned_cols=83 Identities=10% Similarity=0.086 Sum_probs=50.1
Q ss_pred EEEEeCCCCCChHHHHHHHHHHHHHHCCCeEEEEEeCCCcchhhhhhcCceEEEeccchhHHHhhhhcCccEEEEcCcc-
Q 002535 147 LALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVNSLE- 225 (911)
Q Consensus 147 IalI~~~L~~GGae~~v~~LAk~L~~~GyeV~V~t~~~g~~~~~~~~~gi~v~~l~~~~~l~~lI~~~kpDIIhvhs~~- 225 (911)
|+++.+++...-.......+.+.+.+.||++.+++....+.. . ......+...++|.|++....
T Consensus 2 Ig~i~~~~~~~~~~~~~~gi~~~~~~~gy~v~~~~~~~~~~~-~--------------~~~i~~~~~~~~dgiii~~~~~ 66 (269)
T cd06293 2 IGLVVPDIANPFFAELADAVEEEADARGLSLVLCATRNRPER-E--------------LTYLRWLDTNHVDGLIFVTNRP 66 (269)
T ss_pred EEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEeCCCCHHH-H--------------HHHHHHHHHCCCCEEEEeCCCC
Confidence 678888776555566777888899999999988865432110 0 112233455678988876432
Q ss_pred hhHHHHHHhhCCCCCCCEEEEE
Q 002535 226 AKVVISNIMQEPFKSLPLVWTI 247 (911)
Q Consensus 226 ~~~~ia~L~~~~~~giPvV~ti 247 (911)
....+..+. ..++|+|+.-
T Consensus 67 ~~~~~~~~~---~~~~pvV~i~ 85 (269)
T cd06293 67 DDGALAKLI---NSYGNIVLVD 85 (269)
T ss_pred CHHHHHHHH---hcCCCEEEEC
Confidence 212233333 2357887643
No 296
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=20.13 E-value=3.6e+02 Score=28.46 Aligned_cols=79 Identities=14% Similarity=0.129 Sum_probs=51.2
Q ss_pred HHHHHHhhhhcccCCCCCCCEEEEEEe-CCCCCchHHHHHHHHHHcCCCCccEEEccccccHHHHHHHcCeeEEcccCCc
Q 002535 357 LRALLPLFSEVSVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNTADVVIYGSFLEE 435 (911)
Q Consensus 357 LeAl~~L~~~~p~~~~~~~~vkLvIVG-G~~~e~Y~~~Le~la~~lgL~~~~V~flG~v~dV~~~L~~ADVfVlPS~~E~ 435 (911)
+++++.+.+++|+ +++| |.-.. .+.. +.+.+.|.+- +.-.+...++.++-...++.++|.-..
T Consensus 47 ~~~I~~l~~~~p~----------~~vGAGTV~~--~e~a-~~a~~aGA~F--ivSP~~~~~v~~~~~~~~i~~iPG~~T- 110 (196)
T PF01081_consen 47 LEAIEALRKEFPD----------LLVGAGTVLT--AEQA-EAAIAAGAQF--IVSPGFDPEVIEYAREYGIPYIPGVMT- 110 (196)
T ss_dssp HHHHHHHHHHHTT----------SEEEEES--S--HHHH-HHHHHHT-SE--EEESS--HHHHHHHHHHTSEEEEEESS-
T ss_pred HHHHHHHHHHCCC----------CeeEEEeccC--HHHH-HHHHHcCCCE--EECCCCCHHHHHHHHHcCCcccCCcCC-
Confidence 6778888888876 2457 53321 1333 3344456543 555556689999999999999998543
Q ss_pred CCccHHHHHHHHcCCCEEe
Q 002535 436 QTFPEILVKALCFRKPIIA 454 (911)
Q Consensus 436 qGFplvLLEAMA~G~PVIa 454 (911)
|.=+.+|+.+|..+|=
T Consensus 111 ---ptEi~~A~~~G~~~vK 126 (196)
T PF01081_consen 111 ---PTEIMQALEAGADIVK 126 (196)
T ss_dssp ---HHHHHHHHHTT-SEEE
T ss_pred ---HHHHHHHHHCCCCEEE
Confidence 7888999999998763
No 297
>PRK10423 transcriptional repressor RbsR; Provisional
Probab=20.03 E-value=8.3e+02 Score=26.61 Aligned_cols=88 Identities=16% Similarity=0.176 Sum_probs=50.7
Q ss_pred CCCEEEEEeCCCCCChHHHHHHHHHHHHHHCCCeEEEEEeCCCcchhhhhhcCceEEEeccchhHHHhhhhcCccEEEEc
Q 002535 143 RKPQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVN 222 (911)
Q Consensus 143 rkprIalI~~~L~~GGae~~v~~LAk~L~~~GyeV~V~t~~~g~~~~~~~~~gi~v~~l~~~~~l~~lI~~~kpDIIhvh 222 (911)
+...|+++++.+...-...++..+.+.+.+.||++.++........ .. .....+...++|.|++.
T Consensus 55 ~~~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~-~~--------------~~~~~l~~~~vdGiI~~ 119 (327)
T PRK10423 55 QTRTIGMLITASTNPFYSELVRGVERSCFERGYSLVLCNTEGDEQR-MN--------------RNLETLMQKRVDGLLLL 119 (327)
T ss_pred CCCeEEEEeCCCCCCcHHHHHHHHHHHHHHcCCEEEEEeCCCCHHH-HH--------------HHHHHHHHcCCCEEEEe
Confidence 3467889998876555666777888899999999988654322111 00 11112334678988876
Q ss_pred CcchhHHHHHHhhCCCCCCCEEEE
Q 002535 223 SLEAKVVISNIMQEPFKSLPLVWT 246 (911)
Q Consensus 223 s~~~~~~ia~L~~~~~~giPvV~t 246 (911)
...........+.. ..++|+|..
T Consensus 120 ~~~~~~~~~~~l~~-~~~iPvV~i 142 (327)
T PRK10423 120 CTETHQPSREIMQR-YPSVPTVMM 142 (327)
T ss_pred CCCcchhhHHHHHh-cCCCCEEEE
Confidence 54321112222222 347898754
Done!