BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002536
(911 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PNQ|A Chain A, Crystal Structure Of Pyruvate Dehydrogenase Phosphatase 1
(Pdp1)
pdb|2PNQ|B Chain B, Crystal Structure Of Pyruvate Dehydrogenase Phosphatase 1
(Pdp1)
Length = 467
Score = 63.2 bits (152), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 63/139 (45%), Gaps = 15/139 (10%)
Query: 702 AVQLSTDHSTSVEEEIIRIKAEHPDD--SQAVFNDRVKGQLKVTRAFGAGFLK------- 752
AV LS DH+ E E+ R+K EHP + V DR+ G L RAFG K
Sbjct: 236 AVTLSNDHNAQNERELQRLKLEHPKNEAKSVVKQDRLLGLLMPFRAFGDVKFKWSIDLQK 295
Query: 753 ------KPTCNEALLEMFRVDYVGNAPYVSCIPSIVHHRLSSSDRFLVLSSDGLYQYFSN 806
N+ F PY++ P + +HRL D+FLVL++DGL++
Sbjct: 296 RVIESGPDQLNDNEYTKFIPPNYHTPPYLTAEPEVTYHRLRPQDKFLVLATDGLWETMHR 355
Query: 807 EEVVAHVTWFMENVPEGDP 825
++VV V ++ + P
Sbjct: 356 QDVVRIVGEYLTGMHHQQP 374
>pdb|3MQ3|A Chain A, Crystal Structure Of Native Bovine Pdp1c
pdb|3N3C|A Chain A, Crystal Structure Of Native Bovine Pdp1c
Length = 467
Score = 63.2 bits (152), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 67/139 (48%), Gaps = 15/139 (10%)
Query: 702 AVQLSTDHSTSVEEEIIRIKAEHPDD--SQAVFNDRVKGQLKVTRAFG-AGF-----LKK 753
AV LS DH+ E E+ R+K EHP + V DR+ G L RAFG F L+K
Sbjct: 236 AVTLSNDHNAQNEREVERLKLEHPKNEAKSVVKQDRLLGLLMPFRAFGDVKFKWSIDLQK 295
Query: 754 PTCNEALLEMFRVDYVG-------NAPYVSCIPSIVHHRLSSSDRFLVLSSDGLYQYFSN 806
++ +Y PY++ P + +HRL D+FLVL++DGL++
Sbjct: 296 RVIESGPDQLNDNEYTKFIPPNYYTPPYLTAEPEVTYHRLRPQDKFLVLATDGLWETMHR 355
Query: 807 EEVVAHVTWFMENVPEGDP 825
++VV V ++ + P
Sbjct: 356 QDVVRIVGEYLTGMHHQQP 374
>pdb|2I0O|A Chain A, Crystal Structure Of Anopheles Gambiae SerTHR PHOSPHATASE
COMPLEXED With Zn2+
Length = 304
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 62/137 (45%), Gaps = 16/137 (11%)
Query: 677 MHNQNCQVNMMNKNRDISICRLKMRAVQLSTDHSTSVEEEIIRIKAEHPDDSQAVFNDRV 736
+H ++ V +R + +CR +A+++S DH E RI+ + + RV
Sbjct: 139 LHGKDLYVANAGDSRCV-VCR-NGKALEMSFDHKPEDTVEYQRIEKA---GGRVTLDGRV 193
Query: 737 KGQLKVTRAFGAGFLKKPTCNEALLEMFRVDYVGNAPYVSCIPSIVHHRLSSSDRFLVLS 796
G L ++RA G K A +M +S +P I + D F+VL+
Sbjct: 194 NGGLNLSRAIGDHGYKMNKSLPAEEQM-----------ISALPDIEKITVGPEDEFMVLA 242
Query: 797 SDGLYQYFSNEEVVAHV 813
DG++ + ++E+VV V
Sbjct: 243 CDGIWNFMTSEQVVQFV 259
>pdb|3JRQ|A Chain A, Crystal Structure Of (+)-aba-bound Pyl1 In Complex With
Abi1
Length = 326
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 78/184 (42%), Gaps = 35/184 (19%)
Query: 647 SFLKDDSRHKNRSRESLVRMELDRISEESPMHNQNCQVNMMNKNRDISICRLKMRAVQLS 706
SFL+ DS ++ + E++ + + S + NC +R + +CR K A+ LS
Sbjct: 121 SFLRVDSEIESVAPETVGSTSVVAVVFPSHIFVANC-----GDSRAV-LCRGKT-ALPLS 173
Query: 707 TDHSTSVEEEIIRIKAEHPDDSQAVFND-RVKGQLKVTRAFGAGFLKKPTCNEALLEMFR 765
DH E+E RI+A Q +N RV G L ++R+ G +LK
Sbjct: 174 VDHKPDREDEAARIEAAGGKVIQ--WNGARVFGVLAMSRSIGDRYLK------------- 218
Query: 766 VDYVGNAPYVSCIPSIVHHRLSSSDRFLVLSSDGLYQYFSNEEVVAH-----VTWFMENV 820
P + P + + D L+L+SDG++ ++EE + W +N
Sbjct: 219 -------PSIIPDPEVTAVKRVKEDDCLILASDGVWDVMTDEEACEMARKRILLWHKKNA 271
Query: 821 PEGD 824
GD
Sbjct: 272 VAGD 275
>pdb|3KB3|B Chain B, Crystal Structure Of Abscisic Acid-Bound Pyl2 In Complex
With Hab1
Length = 321
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 52/126 (41%), Gaps = 23/126 (18%)
Query: 702 AVQLSTDHSTSVEEEIIRIKAEHPDDSQAVFNDRVKGQLKVTRAFGAGFLKKPTCNEALL 761
A+ LS DH E+E RI+ Q RV G L ++R+ G +LK
Sbjct: 172 AMPLSVDHKPDREDEYARIENAGGKVIQWQ-GARVFGVLAMSRSIGDRYLK--------- 221
Query: 762 EMFRVDYVGNAPYVSCIPSIVHHRLSSSDRFLVLSSDGLYQYFSNEEV--VAHVTWFMEN 819
PYV P + S D L+L+SDGL+ +N+EV +A M +
Sbjct: 222 -----------PYVIPEPEVTFMPRSREDECLILASDGLWDVMNNQEVCEIARRRILMWH 270
Query: 820 VPEGDP 825
G P
Sbjct: 271 KKNGAP 276
>pdb|3QN1|B Chain B, Crystal Structure Of The Pyr1 Abscisic Acid Receptor In
Complex With The Hab1 Type 2c Phosphatase Catalytic
Domain
pdb|3ZVU|B Chain B, Structure Of The Pyr1 His60pro Mutant In Complex With The
Hab1 Phosphatase And Abscisic Acid
Length = 337
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 52/126 (41%), Gaps = 23/126 (18%)
Query: 702 AVQLSTDHSTSVEEEIIRIKAEHPDDSQAVFNDRVKGQLKVTRAFGAGFLKKPTCNEALL 761
A+ LS DH E+E RI+ Q RV G L ++R+ G +LK
Sbjct: 183 AMPLSVDHKPDREDEYARIENAGGKVIQWQ-GARVFGVLAMSRSIGDRYLK--------- 232
Query: 762 EMFRVDYVGNAPYVSCIPSIVHHRLSSSDRFLVLSSDGLYQYFSNEEV--VAHVTWFMEN 819
PYV P + S D L+L+SDGL+ +N+EV +A M +
Sbjct: 233 -----------PYVIPEPEVTFMPRSREDECLILASDGLWDVMNNQEVCEIARRRILMWH 281
Query: 820 VPEGDP 825
G P
Sbjct: 282 KKNGAP 287
>pdb|3NMN|B Chain B, Crystal Structure Of Pyrabactin-Bound Abscisic Acid
Receptor Pyl1 In Complex With Type 2c Protein
Phosphatase Abi1
pdb|3NMN|D Chain D, Crystal Structure Of Pyrabactin-Bound Abscisic Acid
Receptor Pyl1 In Complex With Type 2c Protein
Phosphatase Abi1
Length = 319
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 78/184 (42%), Gaps = 35/184 (19%)
Query: 647 SFLKDDSRHKNRSRESLVRMELDRISEESPMHNQNCQVNMMNKNRDISICRLKMRAVQLS 706
SFL+ DS ++ + E++ + + S + NC +R + +CR K A+ LS
Sbjct: 109 SFLRVDSEIESVAPETVGSTSVVAVVFPSHIFVANC-----GDSRAV-LCRGKT-ALPLS 161
Query: 707 TDHSTSVEEEIIRIKAEHPDDSQAVFND-RVKGQLKVTRAFGAGFLKKPTCNEALLEMFR 765
DH E+E RI+A Q +N RV G L ++R+ G +LK
Sbjct: 162 VDHKPDREDEAARIEAAGGKVIQ--WNGARVFGVLAMSRSIGDRYLK------------- 206
Query: 766 VDYVGNAPYVSCIPSIVHHRLSSSDRFLVLSSDGLYQYFSNEEVVAH-----VTWFMENV 820
P + P + + D L+L+SDG++ ++EE + W +N
Sbjct: 207 -------PSIIPDPEVTAVKRVKEDDCLILASDGVWDVMTDEEACEMARKRILLWHKKNA 259
Query: 821 PEGD 824
GD
Sbjct: 260 VAGD 263
>pdb|3UJG|B Chain B, Crystal Structure Of Snrk2.6 In Complex With Hab1
Length = 350
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 52/126 (41%), Gaps = 23/126 (18%)
Query: 702 AVQLSTDHSTSVEEEIIRIKAEHPDDSQAVFNDRVKGQLKVTRAFGAGFLKKPTCNEALL 761
A+ LS DH E+E RI+ Q RV G L ++R+ G +LK
Sbjct: 196 AMPLSVDHKPDREDEYARIENAGGKVIQWQ-GARVFGVLAMSRSIGDRYLK--------- 245
Query: 762 EMFRVDYVGNAPYVSCIPSIVHHRLSSSDRFLVLSSDGLYQYFSNEEV--VAHVTWFMEN 819
PYV P + S D L+L+SDGL+ +N+EV +A M +
Sbjct: 246 -----------PYVIPEPEVTFMPRSREDECLILASDGLWDVMNNQEVCEIARRRILMWH 294
Query: 820 VPEGDP 825
G P
Sbjct: 295 KKNGAP 300
>pdb|3NMT|B Chain B, Crystal Structure Of Pyrabactin Bound Abscisic Acid
Receptor Pyl2 Mutant A93f In Complex With Type 2c
Protein Phosphatase Hab1
Length = 341
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 52/126 (41%), Gaps = 23/126 (18%)
Query: 702 AVQLSTDHSTSVEEEIIRIKAEHPDDSQAVFNDRVKGQLKVTRAFGAGFLKKPTCNEALL 761
A+ LS DH E+E RI+ Q RV G L ++R+ G +LK
Sbjct: 187 AMPLSVDHKPDREDEYARIENAGGKVIQWQ-GARVFGVLAMSRSIGDRYLK--------- 236
Query: 762 EMFRVDYVGNAPYVSCIPSIVHHRLSSSDRFLVLSSDGLYQYFSNEEV--VAHVTWFMEN 819
PYV P + S D L+L+SDGL+ +N+EV +A M +
Sbjct: 237 -----------PYVIPEPEVTFMPRSREDECLILASDGLWDVMNNQEVCEIARRRILMWH 285
Query: 820 VPEGDP 825
G P
Sbjct: 286 KKNGAP 291
>pdb|4DS8|B Chain B, Complex Structure Of Abscisic Acid Receptor
Pyl3-(+)-Aba-Hab1 In The Presence Of Mn2+
Length = 343
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 52/126 (41%), Gaps = 23/126 (18%)
Query: 702 AVQLSTDHSTSVEEEIIRIKAEHPDDSQAVFNDRVKGQLKVTRAFGAGFLKKPTCNEALL 761
A+ LS DH E+E RI+ Q RV G L ++R+ G +LK
Sbjct: 189 AMPLSVDHKPDREDEYARIENAGGKVIQWQ-GARVFGVLAMSRSIGDRYLK--------- 238
Query: 762 EMFRVDYVGNAPYVSCIPSIVHHRLSSSDRFLVLSSDGLYQYFSNEEV--VAHVTWFMEN 819
PYV P + S D L+L+SDGL+ +N+EV +A M +
Sbjct: 239 -----------PYVIPEPEVTFMPRSREDECLILASDGLWDVMNNQEVCEIARRRILMWH 287
Query: 820 VPEGDP 825
G P
Sbjct: 288 KKNGAP 293
>pdb|3RT0|A Chain A, Crystal Structure Of Pyl10-Hab1 Complex In The Absence Of
Abscisic Acid (Aba)
pdb|3RT0|B Chain B, Crystal Structure Of Pyl10-Hab1 Complex In The Absence Of
Abscisic Acid (Aba)
Length = 340
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 52/126 (41%), Gaps = 23/126 (18%)
Query: 702 AVQLSTDHSTSVEEEIIRIKAEHPDDSQAVFNDRVKGQLKVTRAFGAGFLKKPTCNEALL 761
A+ LS DH E+E RI+ Q RV G L ++R+ G +LK
Sbjct: 186 AMPLSVDHKPDREDEYARIENAGGKVIQWQ-GARVFGVLAMSRSIGDRYLK--------- 235
Query: 762 EMFRVDYVGNAPYVSCIPSIVHHRLSSSDRFLVLSSDGLYQYFSNEEV--VAHVTWFMEN 819
PYV P + S D L+L+SDGL+ +N+EV +A M +
Sbjct: 236 -----------PYVIPEPEVTFMPRSREDECLILASDGLWDVMNNQEVCEIARRRILMWH 284
Query: 820 VPEGDP 825
G P
Sbjct: 285 KKNGAP 290
>pdb|3KDJ|B Chain B, Complex Structure Of (+)-Aba-Bound Pyl1 And Abi1
Length = 316
Score = 37.7 bits (86), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 85/212 (40%), Gaps = 49/212 (23%)
Query: 647 SFLKDDSRHKNRSRESLVRMELDRISEESPMHNQNCQVNMMNKNRDISICRLKMRAVQLS 706
SFL+ DS ++ + E++ + + S + NC +R + +CR K A+ LS
Sbjct: 106 SFLRVDSEIESVAPETVGSTSVVAVVFPSHIFVANC-----GDSRAV-LCRGKT-ALPLS 158
Query: 707 TDHSTSVEEEIIRIKAEHPDDSQAVFND-RVKGQLKVTRAFGAGFLKKPTCNEALLEMFR 765
DH E+E RI+A Q +N RV G L ++R+ G +LK
Sbjct: 159 VDHKPDREDEAARIEAAGGKVIQ--WNGARVFGVLAMSRSIGDRYLK------------- 203
Query: 766 VDYVGNAPYVSCIPSIVHHRLSSSDRFLVLSSDGLYQYFSNEEVVAH-----VTWFMENV 820
P + P + + D L+L+SDG++ ++EE + W +N
Sbjct: 204 -------PSIIPDPEVTAVKRVKEDDCLILASDGVWDVMTDEEACEMARKRILLWHKKNA 256
Query: 821 PEG--------------DPAQYLIAELLFRAA 838
G DPA AE L + A
Sbjct: 257 VAGGASLLADERRKEGKDPAAMSAAEYLSKLA 288
>pdb|3NMV|B Chain B, Crystal Structure Of Pyrabactin-Bound Abscisic Acid
Receptor Pyl2 Mutant A93f In Complex With Type 2c
Protein Phosphatase Abi2
pdb|3UJK|A Chain A, Crystal Structure Of Protein Phosphatase Abi2
pdb|3UJL|B Chain B, Crystal Structure Of Abscisic Acid Bound Pyl2 In Complex
With Type 2c Protein Phosphatase Abi2
Length = 324
Score = 37.4 bits (85), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 64/163 (39%), Gaps = 42/163 (25%)
Query: 695 ICRLKMRAVQLSTDHSTSVEEEIIRIKAEHPDDSQAVFND-RVKGQLKVTRAFGAGFLKK 753
+CR K + LS DH ++E RI+A + +N RV G L ++R+ G +LK
Sbjct: 157 LCRGKT-PLALSVDHKPDRDDEAARIEAAGGKVIR--WNGARVFGVLAMSRSIGDRYLK- 212
Query: 754 PTCNEALLEMFRVDYVGNAPYVSCIPSIVHHRLSSSDRFLVLSSDGLYQYFSNEEVV--- 810
P V P + R D L+L+SDGL+ +NEEV
Sbjct: 213 -------------------PSVIPDPEVTSVRRVKEDDCLILASDGLWDVMTNEEVCDLA 253
Query: 811 --AHVTWFMENVPEG-------------DPAQYLIAELLFRAA 838
+ W +N G DPA AE L + A
Sbjct: 254 RKRILLWHKKNAMAGEALLPAEKRGEGKDPAAMSAAEYLSKMA 296
>pdb|4DA1|A Chain A, Crystal Structure Of Branched-Chain Alpha-Ketoacid
Dehydrogenase Phosphatase With Mg (Ii) Ions At The
Active Site
Length = 389
Score = 36.6 bits (83), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 32/66 (48%), Gaps = 9/66 (13%)
Query: 281 CNLQWAHGKAGEDRVHVV-LSEEQGWLFIGIYDGFSGPDAPDFLMSHLYRAI------DK 333
C Q K EDR L++E L+ +YDG GP A DF +H+ + I +K
Sbjct: 126 CASQIGKRKENEDRFDFAQLTDE--VLYFAVYDGHGGPAAADFCHTHMEKCIMDLLPKEK 183
Query: 334 ELEGLL 339
LE LL
Sbjct: 184 NLETLL 189
>pdb|2IQ1|A Chain A, Crystal Structure Of Human Ppm1k
Length = 274
Score = 36.2 bits (82), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 32/66 (48%), Gaps = 9/66 (13%)
Query: 281 CNLQWAHGKAGEDRVHVV-LSEEQGWLFIGIYDGFSGPDAPDFLMSHLYRAI------DK 333
C Q K EDR L++E L+ +YDG GP A DF +H+ + I +K
Sbjct: 12 CASQIGKRKENEDRFDFAQLTDE--VLYFAVYDGHGGPAAADFCHTHMEKCIMDLLPKEK 69
Query: 334 ELEGLL 339
LE LL
Sbjct: 70 NLETLL 75
>pdb|2POP|A Chain A, The Crystal Structure Of Tab1 And Bir1 Complex
pdb|2POP|C Chain C, The Crystal Structure Of Tab1 And Bir1 Complex
Length = 353
Score = 33.9 bits (76), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 11/72 (15%)
Query: 576 VLRAMAQALESTEEAYMEMVEKALDTNPELALM-----------GSCVLVMLMKDQDVYV 624
V R + QA + E +++E ++ AL L L G+ +V ++ + +YV
Sbjct: 104 VRRVLLQAFDVVERSFLESIDDALAEKASLQLERLKTLEREISGGAMAVVAVLLNNKLYV 163
Query: 625 MNLGDSRAILAQ 636
N+G +RA+L +
Sbjct: 164 ANVGTNRALLCK 175
>pdb|2P8E|A Chain A, Crystal Structure Of The SerineTHREONINE PHOSPHATASE
Domain Of Human Ppm1b
pdb|2P8E|B Chain B, Crystal Structure Of The SerineTHREONINE PHOSPHATASE
Domain Of Human Ppm1b
Length = 307
Score = 33.1 bits (74), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 41/92 (44%), Gaps = 17/92 (18%)
Query: 730 AVFNDRVKGQLKVTRAFGAGFLKKPTCNEALLEMFRVDYVGNAP---YVSCIPSIVHHRL 786
+V RV G L V+RA G K C VD G P VS P +
Sbjct: 188 SVMIQRVNGSLAVSRALGDYDYK---C---------VD--GKGPTEQLVSPEPEVYEILR 233
Query: 787 SSSDRFLVLSSDGLYQYFSNEEVVAHVTWFME 818
+ D F++L+ DG++ SNEE+ +V +E
Sbjct: 234 AEEDEFIILAXDGIWDVMSNEELCEYVKSRLE 265
>pdb|3FXJ|A Chain A, Crystal Structure Of Human Protein Phosphatase 1a (Ppm1a)
Bound With Phosphate At 3 Mm Of Mn2+
pdb|3FXK|A Chain A, Crystal Structure Of Human Protein Phosphatase 1a (Ppm1a)
Bound With Phosphate At 10 Mm Of Mn2+
pdb|3FXL|A Chain A, Crystal Structure Of Human Protein Phosphatase 1a (Ppm1a)
Bound With Citrate At 1 Mm Of Mn2+
pdb|3FXM|A Chain A, Crystal Structure Of Human Protein Phosphatase 1a (Ppm1a)
Bound With Citrate At 10 Mm Of Mn2+
pdb|3FXO|A Chain A, Crystal Structure Of Human Protein Phosphatase 1a (Ppm1a)
Bound With Phosphate At 1 Mm Of Mn2+
Length = 390
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 52/125 (41%), Gaps = 17/125 (13%)
Query: 695 ICRLKMRAVQLST-DHSTSVEEEIIRIKAEHPDDSQAVFNDRVKGQLKVTRAFGAGFLKK 753
+CR R V T DH S E RI+ + +V RV G L V+RA G F K
Sbjct: 151 LCR--NRKVHFFTQDHKPSNPLEKERIQ----NAGGSVMIQRVNGSLAVSRALG-DFDYK 203
Query: 754 PTCNEALLEMFRVDYVGNAPYVSCIPSIVHHRLSSSDRFLVLSSDGLYQYFSNEEVVAHV 813
+ E V P V I R D+F++L+ DG++ NEE+ V
Sbjct: 204 CVHGKGPTEQL----VSPEPEVHDI-----ERSEEDDQFIILACDGIWDVMGNEELCDFV 254
Query: 814 TWFME 818
+E
Sbjct: 255 RSRLE 259
>pdb|1A6Q|A Chain A, Crystal Structure Of The Protein SerineTHREONINE
PHOSPHATASE 2C AT 2 A Resolution
Length = 382
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 52/125 (41%), Gaps = 17/125 (13%)
Query: 695 ICRLKMRAVQLST-DHSTSVEEEIIRIKAEHPDDSQAVFNDRVKGQLKVTRAFGAGFLKK 753
+CR R V T DH S E RI+ + +V RV G L V+RA G F K
Sbjct: 151 LCR--NRKVHFFTQDHKPSNPLEKERIQ----NAGGSVMIQRVNGSLAVSRALG-DFDYK 203
Query: 754 PTCNEALLEMFRVDYVGNAPYVSCIPSIVHHRLSSSDRFLVLSSDGLYQYFSNEEVVAHV 813
+ E V P V I R D+F++L+ DG++ NEE+ V
Sbjct: 204 CVHGKGPTEQL----VSPEPEVHDI-----ERSEEDDQFIILACDGIWDVMGNEELCDFV 254
Query: 814 TWFME 818
+E
Sbjct: 255 RSRLE 259
>pdb|3OMW|A Chain A, Crystal Structure Of Ssu72, An Essential Eukaryotic
Phosphatase Specific For The C-Terminal Domain Of Rna
Polymerase Ii
pdb|3OMW|B Chain B, Crystal Structure Of Ssu72, An Essential Eukaryotic
Phosphatase Specific For The C-Terminal Domain Of Rna
Polymerase Ii
pdb|3OMW|C Chain C, Crystal Structure Of Ssu72, An Essential Eukaryotic
Phosphatase Specific For The C-Terminal Domain Of Rna
Polymerase Ii
pdb|3OMW|D Chain D, Crystal Structure Of Ssu72, An Essential Eukaryotic
Phosphatase Specific For The C-Terminal Domain Of Rna
Polymerase Ii
pdb|3OMX|A Chain A, Crystal Structure Of Ssu72 With Vanadate Complex
pdb|3OMX|B Chain B, Crystal Structure Of Ssu72 With Vanadate Complex
pdb|3OMX|C Chain C, Crystal Structure Of Ssu72 With Vanadate Complex
pdb|3OMX|D Chain D, Crystal Structure Of Ssu72 With Vanadate Complex
Length = 190
Score = 30.4 bits (67), Expect = 4.2, Method: Composition-based stats.
Identities = 17/68 (25%), Positives = 34/68 (50%)
Query: 669 DRISEESPMHNQNCQVNMMNKNRDISICRLKMRAVQLSTDHSTSVEEEIIRIKAEHPDDS 728
D S++ + QN ++M+++NR I C + + + D +VEE + + H +
Sbjct: 63 DLESKDKEFYTQNGLLHMLDRNRRIKKCPERFQDTKEQFDIIVTVEERVYDLVVMHMESM 122
Query: 729 QAVFNDRV 736
++V N V
Sbjct: 123 ESVDNRPV 130
>pdb|3P9Y|A Chain A, Crystal Structure Of The Drosophila Melanogaster
Ssu72-Pctd Complex
pdb|3P9Y|B Chain B, Crystal Structure Of The Drosophila Melanogaster
Ssu72-Pctd Complex
pdb|3P9Y|C Chain C, Crystal Structure Of The Drosophila Melanogaster
Ssu72-Pctd Complex
pdb|3P9Y|D Chain D, Crystal Structure Of The Drosophila Melanogaster
Ssu72-Pctd Complex
Length = 198
Score = 30.4 bits (67), Expect = 5.2, Method: Composition-based stats.
Identities = 17/68 (25%), Positives = 34/68 (50%)
Query: 669 DRISEESPMHNQNCQVNMMNKNRDISICRLKMRAVQLSTDHSTSVEEEIIRIKAEHPDDS 728
D S++ + QN ++M+++NR I C + + + D +VEE + + H +
Sbjct: 71 DLESKDKEFYTQNGLLHMLDRNRRIKKCPERFQDTKEQFDIIVTVEERVYDLVVMHMESM 130
Query: 729 QAVFNDRV 736
++V N V
Sbjct: 131 ESVDNRPV 138
>pdb|3UW2|A Chain A, X-Ray Crystal Structure Of
PhosphoglucomutasePHOSPHOMANNOMUTASE Family Protein
(Bth_i1489)from Burkholderia Thailandensis
Length = 485
Score = 30.0 bits (66), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
Query: 306 LFIGIYDGFSGPDAPDFLMSHLYRAIDKELEGLLWDYEDKSPTDHPELGHPK 357
L + +G +GP L + L++A+ EL L D + P HP+ HP+
Sbjct: 197 LVVDAGNGVAGP-----LATRLFKALGCELVELFTDIDGNFPNHHPDPAHPE 243
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,856,221
Number of Sequences: 62578
Number of extensions: 1128882
Number of successful extensions: 2245
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 2188
Number of HSP's gapped (non-prelim): 61
length of query: 911
length of database: 14,973,337
effective HSP length: 108
effective length of query: 803
effective length of database: 8,214,913
effective search space: 6596575139
effective search space used: 6596575139
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)