Query         002536
Match_columns 911
No_of_seqs    237 out of 1940
Neff          4.5 
Searched_HMMs 29240
Date          Tue Mar 26 15:46:37 2013
Command       hhsearch -i /local_scratch/syshi/lefta3m/002536.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1257-1261//hhsearch_pdb/002536hhsearch_pdb 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 2pnq_A [pyruvate dehydrogenase   1.0       1       1  377.2  27.2  244  575-884   160-456 (467)
  2 2j4o_A Mitogen-activated prote   1.0       1       1  319.0  19.4  263  535-888    60-371 (401)
  3 2irm_A Mitogen-activated prote   1.0       1       1  315.7  21.3  263  535-885    48-358 (358)
  4 2p8e_A PPM1B beta isoform vari   1.0       1       1  312.3  24.2  236  536-886    54-301 (307)
  5 2i0o_A Ser/Thr phosphatase; be   1.0       1       1  310.4  20.1  244  535-883    49-304 (304)
  6 1a6q_A Phosphatase 2C; catalyt   1.0       1       1  308.3  26.1  236  536-886    52-295 (382)
  7 3qn1_B Protein phosphatase 2C    1.0       1       1  307.4  18.7  240  535-887    60-332 (337)
  8 3d8k_A PP2C, protein phosphata   1.0       1       1  304.7  24.7  234  535-889    46-330 (377)
  9 2i44_A Serine-threonine phosph   1.0       1       1  294.2  22.3  245  535-884    51-322 (324)
 10 2isn_A NYSGXRC-8828Z, phosphat   1.0       1       1  293.2  23.0  233  535-886    41-336 (364)

No 1  
>2pnq_A [pyruvate dehydrogenase [lipoamide]]-phosphatase 1; pyruvate dehydrogenase phosphatase 1, catalytic subunit, PDP1C, hydrolase; 1.81A {Rattus norvegicus} PDB: 3n3c_A 3mq3_A
Probab=1.00  E-value=1  Score=377.17  Aligned_cols=244  Identities=27%  Similarity=0.349  Sum_probs=190.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH------HCCCCCCCCCCCEEEEEEEECCEEEEEECCCCCEEEEEECCCCCCCCCCC
Q ss_conf             999999999999999999999997------50498645799449999997995999984566199997279999999987
Q 002536          575 AVLRAMAQALESTEEAYMEMVEKA------LDTNPELALMGSCVLVMLMKDQDVYVMNLGDSRAILAQERPNDRHPNPSF  648 (911)
Q Consensus       575 ~Vl~AL~rAl~~teealle~~~k~------l~~npela~sGSTalVvLI~g~~LYVANVGDSRAIL~r~~~~~~~~~~~~  648 (911)
                      .+.++|.+||..+|+.++......      ....+....||||++++++.++++||||||||||||++...++       
T Consensus       160 ~~~~aL~~af~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~GtTa~v~li~~~~l~vAnvGDSRa~l~r~~~~g-------  232 (467)
T 2pnq_A          160 DVKEALINAFKRLDNDISLEAQVGDPNSFLNYLVLRVAFSGATACVAHVDGVDLHVANTGDSRAMLGVQEEDG-------  232 (467)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHSEECEEEEEEETTEEEEEEESSCEEEEEEECTTS-------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEEECCEEEEEECCCCEEEEEEECCCC-------
T ss_conf             0999999999999999997554202321111134567898413999999899799998778569999706899-------


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCC
Q ss_conf             65542223421135666643100135876532100013556641011024424999254699883999999984099997
Q 002536          649 LKDDSRHKNRSRESLVRMELDRISEESPMHNQNCQVNMMNKNRDISICRLKMRAVQLSTDHSTSVEEEIIRIKAEHPDDS  728 (911)
Q Consensus       649 ~~~~~~~~~r~~~~~~~~~l~ri~eE~p~~~~~~~~~~~~~~~~~~~~~~~l~a~qLT~DHS~s~eeE~~RI~~egpdd~  728 (911)
                                                                        .|.+.|||.||++.++.|++||.++||...
T Consensus       233 --------------------------------------------------~~~~~~LT~DH~~~~~~E~~Ri~~~g~~~~  262 (467)
T 2pnq_A          233 --------------------------------------------------SWSAVTLSNDHNAQNERELQRLKLEHPKNE  262 (467)
T ss_dssp             --------------------------------------------------CEEEEECCCCCSTTCHHHHHHHHHTSCGGG
T ss_pred             --------------------------------------------------CEEEEECCCCCCCCCHHHHHHHHHCCCCCC
T ss_conf             --------------------------------------------------578998887899999999999998099865


Q ss_pred             --CEEECCCCCCCCCCCCCCCCCCCCCCCC-HHHHH------------HHHHHCCCCCCCCEEECCCCEEEEECCCCEEE
Q ss_conf             --4021462048400123347887679760-47787------------75451357999941216521499822799499
Q 002536          729 --QAVFNDRVKGQLKVTRAFGAGFLKKPTC-NEALL------------EMFRVDYVGNAPYVSCIPSIVHHRLSSSDRFL  793 (911)
Q Consensus       729 --~~I~ndRVkG~L~VTRAfGD~~LKqpk~-N~~Ll------------e~fri~yigt~PyIsaePdI~~~kL~~~D~FL  793 (911)
                        ..+.++||+|.|.+||||||..+|.+.- ...++            +.+......++|||+++|+|..++|.++|.||
T Consensus       263 ~~~~~~~~Rv~G~l~vtRAlGd~~~K~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~v~~~Pdv~~~~l~~~D~fL  342 (467)
T 2pnq_A          263 AKSVVKQDRLLGLLMPFRAFGDVKFKWSIDLQKRVIESGPDQLNDNEYTKFIPPNYHTPPYLTAEPEVTYHRLRPQDKFL  342 (467)
T ss_dssp             HHHHBSSSSBTTTBSSSBCEECGGGTSCHHHHHHHHSSSCC-----------CTTCSSSCCCBCCCEEEEEECCTTEEEE
T ss_pred             CCEEEECCCCCCCCCCCHHCCCHHHCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEE
T ss_conf             66067568315640200011761420440233332002346443321001366434678755456608999858998499


Q ss_pred             EEECCCCCCCCCHHHHHHHHHHHHHCCCCCCH----------------------------HHHHHHHHHHHHHHHCC---
Q ss_conf             99867458978989999999985531999991----------------------------89999999999999819---
Q 002536          794 VLSSDGLYQYFSNEEVVAHVTWFMENVPEGDP----------------------------AQYLIAELLFRAAKKND---  842 (911)
Q Consensus       794 ILASDGLwD~LSneEVv~iV~~~i~~~~~gdp----------------------------aq~LiaelL~raAkk~G---  842 (911)
                      |||||||||+|+++|++++|..++......+|                            ....++..|++.|...|   
T Consensus       343 VLaSDGLwd~ls~~eiv~iv~~~~~~~~~~~p~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~naA~~Lir~Al~~~~~G  422 (467)
T 2pnq_A          343 VLATDGLWETMHRQDVVRIVGEYLTGMHHQQPIAVGGYKVTLGQMHGLLTERRAKMSSVFEDQNAATHLIRHAVGNNEFG  422 (467)
T ss_dssp             EEECHHHHTTSCHHHHHHHHHHHHTTCSSCC-------------------------------CCHHHHHHHHHHC-----
T ss_pred             EEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCC
T ss_conf             99856722357849999999999861455685435556753777778888765303577300689999999971478767


Q ss_pred             -CCCHHCCCCCCCCCCCCCHHHHCCCCCCCCCCEEEEEEECCC
Q ss_conf             -930010014543334520121015788766856888898466
Q 002536          843 -RRLLASHCCNLQLSFGEESEIRHFATGLYHVIATEQVLFFLL  884 (911)
Q Consensus       843 -~~~~~~~~~~~~~d~~eLl~ip~g~RRky~DDITVIVI~L~~  884 (911)
                       |         ....+.+|+.||++.+|+|+||||||||+|+.
T Consensus       423 e~---------~~~~~~~ll~~~~~~~R~~~DdITViVv~~~~  456 (467)
T 2pnq_A          423 AV---------DHERLSKMLSLPEELARMYRDDITIIVVQFNS  456 (467)
T ss_dssp             -----------------------------CCSCEEEEEEEECH
T ss_pred             CC---------HHHHHHHHHCCCCCCCCCCCCCCEEEEEEECC
T ss_conf             51---------07777766237963024587980899999375


No 2  
>2j4o_A Mitogen-activated protein kinase kinase kinase 7-interacting protein 1; TGF-beta, pseudo-phosphatase, TAK1 binding protein, protein binding; 2.25A {Homo sapiens} PDB: 2pom_A 2pop_A
Probab=1.00  E-value=1  Score=318.95  Aligned_cols=263  Identities=19%  Similarity=0.211  Sum_probs=196.9

Q ss_pred             CCEEEEEEEECCCCCHHHHHHHHHHHCCHHHHCC---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----------
Q ss_conf             8827999996477723799999996151002117---999978999999999999999999999997504----------
Q 002536          535 RKKLFPWSYDWHREEPCIDERMVESSGPIRKCKS---GIIDHDAVLRAMAQALESTEEAYMEMVEKALDT----------  601 (911)
Q Consensus       535 ~~~~ffgVfDGHGG~~~~~s~~v~e~L~~~l~~s---g~~d~e~Vl~AL~rAl~~teealle~~~k~l~~----------  601 (911)
                      ....||+|||||||.  .++.++.+.++..+...   .......+.++|.+||..+++.|++..++.+..          
T Consensus        60 ~~~~lf~V~DGhGG~--~aa~~as~~l~~~l~~~~~~~~~~~~~~~~~l~~af~~~~~~i~~~~~~~~~~~~~~~~~~~~  137 (401)
T 2j4o_A           60 NNCFLYGVFNGYDGN--RVTNFVAQRLSAELLLGQLNAEHAEADVRRVLLQAFDVVERSFLESIDDALAEKASLQSQLPE  137 (401)
T ss_dssp             TTEEEEEEEEEESSS--HHHHHHHHHHHHTTSSSSCCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCT
T ss_pred             CCEEEEEEECCCCCH--HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf             984999997499977--999999999999999856410344164999999999999999999888987532000123555


Q ss_pred             ----------CC----------CCCCCCCEEEEEEEECCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf             ----------98----------6457994499999979959999845661999972799999999876554222342113
Q 002536          602 ----------NP----------ELALMGSCVLVMLMKDQDVYVMNLGDSRAILAQERPNDRHPNPSFLKDDSRHKNRSRE  661 (911)
Q Consensus       602 ----------np----------ela~sGSTalVvLI~g~~LYVANVGDSRAIL~r~~~~~~~~~~~~~~~~~~~~~r~~~  661 (911)
                                .+          ....||||++++++.++++||+|||||||||++.+.+                     
T Consensus       138 g~~~~~~~~~~~~~~~~~~~~~~~~~~GtTa~~~li~~~~l~vanvGDSRa~l~r~~~~---------------------  196 (401)
T 2j4o_A          138 GVPQHQLPPQYQKILERLKTLEREISGGAMAVVAVLLNNKLYVANVGTNRALLCKSTVD---------------------  196 (401)
T ss_dssp             TCCSSCSCGGGHHHHHHHHHHHHHHCCEEEEEEEEEETTEEEEEEESSCEEEEEEECSS---------------------
T ss_pred             CCCCCCCCCCCCHHHHHHHCCCCCCCCCCCEEEEEEECCEEEEEECCCCEEEEEECCCC---------------------
T ss_conf             54221011111002222201346678865779999989988999726846999981799---------------------


Q ss_pred             HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCCC
Q ss_conf             56666431001358765321000135566410110244249992546998839999999840999974021462048400
Q 002536          662 SLVRMELDRISEESPMHNQNCQVNMMNKNRDISICRLKMRAVQLSTDHSTSVEEEIIRIKAEHPDDSQAVFNDRVKGQLK  741 (911)
Q Consensus       662 ~~~~~~l~ri~eE~p~~~~~~~~~~~~~~~~~~~~~~~l~a~qLT~DHS~s~eeE~~RI~~egpdd~~~I~ndRVkG~L~  741 (911)
                                                           ++.+++||.||++.++.|+.||..+|+... .+...|++|.|.
T Consensus       197 -------------------------------------g~~~~~LT~DH~~~~~~E~~Ri~~~Gg~v~-~~~~~r~~g~l~  238 (401)
T 2j4o_A          197 -------------------------------------GLQVTQLNVDHTTENEDELFRLSQLGLDAG-KIKQVGIICGQE  238 (401)
T ss_dssp             -------------------------------------SEEEEECSCCCSTTSHHHHHHHHTTTCCHH-HHHHHCCBTTBC
T ss_pred             -------------------------------------CCEEEECCCCCCCCCHHHHHHHHHCCCCEE-ECCCCCCCCCCC
T ss_conf             -------------------------------------866887999999998789999997099755-334750148734


Q ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCEEECCCCEE-EEECCCCEEEEEECCCCCCCC--------CHHHHHHH
Q ss_conf             123347887679760477877545135799994121652149-982279949999867458978--------98999999
Q 002536          742 VTRAFGAGFLKKPTCNEALLEMFRVDYVGNAPYVSCIPSIVH-HRLSSSDRFLVLSSDGLYQYF--------SNEEVVAH  812 (911)
Q Consensus       742 VTRAfGD~~LKqpk~N~~Lle~fri~yigt~PyIsaePdI~~-~kL~~~D~FLILASDGLwD~L--------SneEVv~i  812 (911)
                      +||||||..+|.+.-+.   +.   -.....++|+++|+|.. ++|.++|.|||||||||||+|        +++|++++
T Consensus       239 vtRalGd~~~k~~~~~~---~~---~~~~~~~~v~~~Pdv~~~~~l~~~d~flvLaSDGlwd~l~~~~~~~~s~~ei~~~  312 (401)
T 2j4o_A          239 STRRIGDYKVKYGYTDI---DL---LSAAKSKPIIAEPEIHGAQPLDGVTGFLVLMSEGLYKALEAAHGPGQANQEIAAM  312 (401)
T ss_dssp             CSBCEECHHHHHSGGGS---TT---TTTCSSCSSBCCCEEEEEEECTTCCEEEEEECHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CCCCCCCHHHCCCCCCC---CC---CCCCCCCCEECCCEEEEEEEECCCCCEEEEECCCHHHCCCCCCCCCCCHHHHHHH
T ss_conf             65110888662465433---23---3456789765466587748847999699997541433401324578899999999


Q ss_pred             HHHHHHCCCCCCHHHHHHHHHHHHHHHH-------CCCCCHHCCCCCCCCCCCCCHHHHCCCCCCCCCCEEEEEEECCCC
Q ss_conf             9985531999991899999999999998-------199300100145433345201210157887668568888984667
Q 002536          813 VTWFMENVPEGDPAQYLIAELLFRAAKK-------NDRRLLASHCCNLQLSFGEESEIRHFATGLYHVIATEQVLFFLLL  885 (911)
Q Consensus       813 V~~~i~~~~~gdpaq~LiaelL~raAkk-------~G~~~~~~~~~~~~~d~~eLl~ip~g~RRky~DDITVIVI~L~~~  885 (911)
                      |...+...  .++..  +++.|+..|++       +|.            .-        .....++||||||||.|...
T Consensus       313 v~~~l~~~--~~~~~--~a~~Lv~~A~~~~~~a~~~G~------------~~--------~~~~~~~DNiTvivv~~~~~  368 (401)
T 2j4o_A          313 IDTEFAKQ--TSLDA--VAQAVVDRVKRIHSDTFASGG------------ER--------ARFCPRHEDMTLLVRNFGYP  368 (401)
T ss_dssp             HHHHHHHC--SSHHH--HHHHHHHHHHHHHHHHHHSCS------------SG--------GGGCSEECCEEEEEEEEBCC
T ss_pred             HHHHHHCC--CCHHH--HHHHHHHHHHHHHHHHHHCCC------------CC--------CCCCCCCCCEEEEEEECCCC
T ss_conf             99998627--99999--999999999985023330477------------43--------35678999859999983798


Q ss_pred             CCC
Q ss_conf             775
Q 002536          886 STK  888 (911)
Q Consensus       886 ~~~  888 (911)
                      ...
T Consensus       369 ~~~  371 (401)
T 2j4o_A          369 LGE  371 (401)
T ss_dssp             CC-
T ss_pred             CCC
T ss_conf             753


No 3  
>2irm_A Mitogen-activated protein kinase kinase kinase 7 interacting protein 1; TAK1-binding protein, TAB1; 3.00A {Anopheles gambiae}
Probab=1.00  E-value=1  Score=315.69  Aligned_cols=263  Identities=19%  Similarity=0.157  Sum_probs=193.6

Q ss_pred             CCEEEEEEEECCCCCHHHHHHHHHHHCCHHHHC---CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CCC-
Q ss_conf             882799999647772379999999615100211---799997899999999999999999999999750-------498-
Q 002536          535 RKKLFPWSYDWHREEPCIDERMVESSGPIRKCK---SGIIDHDAVLRAMAQALESTEEAYMEMVEKALD-------TNP-  603 (911)
Q Consensus       535 ~~~~ffgVfDGHGG~~~~~s~~v~e~L~~~l~~---sg~~d~e~Vl~AL~rAl~~teealle~~~k~l~-------~np-  603 (911)
                      ....||+|||||||.  .++.++.+.+...+..   ........+.++|.+||..+++.+++..++.+.       ..+ 
T Consensus        48 ~~~~lf~V~DGhGG~--~aa~~as~~l~~~l~~~~l~~~~~~~~~~~~l~~a~~~~d~~i~~~~~~~~~~~~~~~~~~~~  125 (358)
T 2irm_A           48 NNTSLYAILSGHNGV--TVAENALQEMAAELLLGQLNVCNTDEAVKELIRQSFMSVEKGYFDSINPHVATKTAIQLHLSA  125 (358)
T ss_dssp             SSEEEEEEEEEESCS--HHHHHHHHHHHHHSSSSTTTTCCSHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHTTC-
T ss_pred             CCEEEEEEECCCCCH--HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf             987999998289988--999999999999999865222335165999999999999999998777653001111113655


Q ss_pred             -----------------------CCCCCCCEEEEEEEECCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf             -----------------------645799449999997995999984566199997279999999987655422234211
Q 002536          604 -----------------------ELALMGSCVLVMLMKDQDVYVMNLGDSRAILAQERPNDRHPNPSFLKDDSRHKNRSR  660 (911)
Q Consensus       604 -----------------------ela~sGSTalVvLI~g~~LYVANVGDSRAIL~r~~~~~~~~~~~~~~~~~~~~~r~~  660 (911)
                                             ....||||++++++.++++||+|||||||||++...++                   
T Consensus       126 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~GtTav~~li~~~~l~vAnvGDSRa~l~r~~~~g-------------------  186 (358)
T 2irm_A          126 DGMNQYEISQQFENVLQKLDSLNNALSVGSSAVLALIHRSHLYLGNIGNCRALLCKTDEHD-------------------  186 (358)
T ss_dssp             --------------CCCTHHHHHTTTTCEEEEEEEEEESSEEEEEEESSCEEEEEECCTTC-------------------
T ss_pred             CCCCCCCCHHHCCCHHHHCCCCCCCCCCCCCEEEEEEECCEEEEEECCCCEEEEEEECCCC-------------------
T ss_conf             4533210000001001100023688999775899999999999998126819999965899-------------------


Q ss_pred             HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCC
Q ss_conf             35666643100135876532100013556641011024424999254699883999999984099997402146204840
Q 002536          661 ESLVRMELDRISEESPMHNQNCQVNMMNKNRDISICRLKMRAVQLSTDHSTSVEEEIIRIKAEHPDDSQAVFNDRVKGQL  740 (911)
Q Consensus       661 ~~~~~~~l~ri~eE~p~~~~~~~~~~~~~~~~~~~~~~~l~a~qLT~DHS~s~eeE~~RI~~egpdd~~~I~ndRVkG~L  740 (911)
                                                            .|.++|||.||++.++.|+.||.++|+    .+...|+.|.+
T Consensus       187 --------------------------------------~~~~~~LT~DH~~~~~~E~~Ri~~~Gg----~v~~~r~~g~l  224 (358)
T 2irm_A          187 --------------------------------------TLTVTQLSVDHNLLNAEEAARLFRLGL----MAQNFEGVPLY  224 (358)
T ss_dssp             --------------------------------------SCEEEECSCCCBTTSHHHHHHHHTTTC----CGGGGTTCTTC
T ss_pred             --------------------------------------CEEEEECCCCCCCCCHHHHHHHHHCCC----EEECCCCCCEE
T ss_conf             --------------------------------------665576899999998889999998599----69636737777


Q ss_pred             CCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCEEECCCCEE-EEECCCCEEEEEECCCCCCCCC----------HHHH
Q ss_conf             0123347887679760477877545135799994121652149-9822799499998674589789----------8999
Q 002536          741 KVTRAFGAGFLKKPTCNEALLEMFRVDYVGNAPYVSCIPSIVH-HRLSSSDRFLVLSSDGLYQYFS----------NEEV  809 (911)
Q Consensus       741 ~VTRAfGD~~LKqpk~N~~Lle~fri~yigt~PyIsaePdI~~-~kL~~~D~FLILASDGLwD~LS----------neEV  809 (911)
                       +||||||..+|...-...      .--..+.++++++|+|.. ++|.++|.|||||||||||+++          ++|+
T Consensus       225 -lTRalGd~~~K~~~~~~~------~~~~~~~~~v~~~Pdi~~~~~l~~~d~fllL~SDGl~d~l~~~~~~~~~~~~~ei  297 (358)
T 2irm_A          225 -STRCIGNYLGKAGYKDCN------FLSSATAEPVIFEPEIVGGIQITPACRFLVLMSSGLCRALHEIFPGDASTGNREL  297 (358)
T ss_dssp             -BSBCEECHHHHTTGGGSS------SSTTCSSCSSBCCCEEEEEEECCTTEEEEEEECHHHHHHHHHHSCSSSSHHHHHH
T ss_pred             -CCCCCCCHHHHCCCCCCC------CCCCCCCCCEECCCEEEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHH
T ss_conf             -165776988840443343------3566678977446858887980899819999787763275463445666667999


Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCCCCCCCHHH-HCCCCCC--CCCCEEEEEEECCCC
Q ss_conf             999998553199999189999999999999819930010014543334520121-0157887--668568888984667
Q 002536          810 VAHVTWFMENVPEGDPAQYLIAELLFRAAKKNDRRLLASHCCNLQLSFGEESEI-RHFATGL--YHVIATEQVLFFLLL  885 (911)
Q Consensus       810 v~iV~~~i~~~~~gdpaq~LiaelL~raAkk~G~~~~~~~~~~~~~d~~eLl~i-p~g~RRk--y~DDITVIVI~L~~~  885 (911)
                      +++|...+..  ..++..  +++.|+..|.+...            +..  ... ....+|+  .+||||||||.|..+
T Consensus       298 ~~~v~~~~~~--~~~~~~--~a~~Lv~~A~~~~~------------~~~--~~~~~~~~~~Gg~~~DNiTvivv~~~~p  358 (358)
T 2irm_A          298 VRMISEEFQN--QSTLGG--VAQSVVHRIVQAHH------------DTY--MQLVEEHRSVTFNSRDDVTLLIRNFNYA  358 (358)
T ss_dssp             HHHHHHHTTT--CCSHHH--HHHHHHHHHHHHHH------------HHH--HHHHSSSCCCCCCEECCEEEEEEESCC-
T ss_pred             HHHHHHHHHC--CCCHHH--HHHHHHHHHHHHHH------------HHH--CCCCCCCCCCCCCCCCCEEEEEEECCCC
T ss_conf             9999999862--799999--99999999998634------------220--1233322224788889839999967799


No 4  
>2p8e_A PPM1B beta isoform variant 6; structural genomics, hydrolase, PSI-2, protein structure initiative; 1.82A {Homo sapiens}
Probab=1.00  E-value=1  Score=312.26  Aligned_cols=236  Identities=20%  Similarity=0.229  Sum_probs=191.7

Q ss_pred             CEEEEEEEECCCCCHHHHHHHHHHHCCHHHHCCCC------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             82799999647772379999999615100211799------------997899999999999999999999999750498
Q 002536          536 KKLFPWSYDWHREEPCIDERMVESSGPIRKCKSGI------------IDHDAVLRAMAQALESTEEAYMEMVEKALDTNP  603 (911)
Q Consensus       536 ~~~ffgVfDGHGG~~~~~s~~v~e~L~~~l~~sg~------------~d~e~Vl~AL~rAl~~teealle~~~k~l~~np  603 (911)
                      ...||+|||||||.  .++.++.+.+...+.....            .....+.++|.+||..+++.+.+..    ...+
T Consensus        54 ~~~l~~V~DGhGG~--~~a~~as~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~i~~~~----~~~~  127 (307)
T 2p8e_A           54 DWSFFAVYDGHAGS--RVANYCSTHLLEHITTNEDFRAAGKSGSALELSVENVKNGIRTGFLKIDEYMRNFS----DLRN  127 (307)
T ss_dssp             EEEEEEEEEEESCS--HHHHHHHHHHHHHHHTSTTTC-----------CHHHHHHHHHHHHHHHHHHHHTST----TTC-
T ss_pred             CEEEEEEECCCCCH--HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH----HHCC
T ss_conf             76999997898999--99999999999999865766404544444434679999999999999999998515----4125


Q ss_pred             CCCCCCCEEEEEEEECCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf             64579944999999799599998456619999727999999998765542223421135666643100135876532100
Q 002536          604 ELALMGSCVLVMLMKDQDVYVMNLGDSRAILAQERPNDRHPNPSFLKDDSRHKNRSRESLVRMELDRISEESPMHNQNCQ  683 (911)
Q Consensus       604 ela~sGSTalVvLI~g~~LYVANVGDSRAIL~r~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~l~ri~eE~p~~~~~~~  683 (911)
                      ....||||++++++.++++|++||||||||+++.+                                             
T Consensus       128 ~~~~~GtT~~~~~i~~~~l~vanvGDSRa~l~r~g---------------------------------------------  162 (307)
T 2p8e_A          128 GMDRSGSTAVGVMISPKHIYFINCGDSRAVLYRNG---------------------------------------------  162 (307)
T ss_dssp             --CCCEECEEEEEECSSEEEEEEESSCEEEEEETT---------------------------------------------
T ss_pred             CCCCCCCEEEEEEEECCCEEEEECCCCEEEEEECC---------------------------------------------
T ss_conf             77898871899999789189997368579999899---------------------------------------------


Q ss_pred             CCCCCCCCCHHHCCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf             01355664101102442499925469988399999998409999740214620484001233478876797604778775
Q 002536          684 VNMMNKNRDISICRLKMRAVQLSTDHSTSVEEEIIRIKAEHPDDSQAVFNDRVKGQLKVTRAFGAGFLKKPTCNEALLEM  763 (911)
Q Consensus       684 ~~~~~~~~~~~~~~~~l~a~qLT~DHS~s~eeE~~RI~~egpdd~~~I~ndRVkG~L~VTRAfGD~~LKqpk~N~~Lle~  763 (911)
                                       .+.|||.||++..+.|+.||..++    ..+...|++|.|.+||||||..+|....       
T Consensus       163 -----------------~~~~lT~DH~~~~~~E~~rI~~~g----g~v~~~rv~g~l~ltRalGd~~~k~~~~-------  214 (307)
T 2p8e_A          163 -----------------QVCFSTQDHKPCNPREKERIQNAG----GSVMIQRVNGSLAVSRALGDYDYKCVDG-------  214 (307)
T ss_dssp             -----------------EEEEECCCCCTTSHHHHHHHHHTT----CCEETTEETTTBSCSBCEECGGGSCCTT-------
T ss_pred             -----------------CCCCCCCCCCCCCHHHHHHHHHCC----CEEEECCCCCEEECCCCCCCHHHHCCCC-------
T ss_conf             -----------------656078888997978999999869----9898175367570332445887722766-------


Q ss_pred             HHHCCCCCCCCEEECCCCEEEEECCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCC
Q ss_conf             45135799994121652149982279949999867458978989999999985531999991899999999999998199
Q 002536          764 FRVDYVGNAPYVSCIPSIVHHRLSSSDRFLVLSSDGLYQYFSNEEVVAHVTWFMENVPEGDPAQYLIAELLFRAAKKNDR  843 (911)
Q Consensus       764 fri~yigt~PyIsaePdI~~~kL~~~D~FLILASDGLwD~LSneEVv~iV~~~i~~~~~gdpaq~LiaelL~raAkk~G~  843 (911)
                          .....|+|+++|++..+++.++|.|||||||||||+++++|+++++...+..  ..++..  +++.|+..|..+|.
T Consensus       215 ----~~~~~~~v~~~pdv~~~~l~~~d~~llL~SDGl~d~ls~~ei~~~v~~~~~~--~~~~~~--~a~~Lv~~A~~~g~  286 (307)
T 2p8e_A          215 ----KGPTEQLVSPEPEVYEILRAEEDEFIILACDGIWDVMSNEELCEYVKSRLEV--SDDLEN--VCNWVVDTCLHKGS  286 (307)
T ss_dssp             ----CCGGGSSSBCCCEEEEEECCTTEEEEEEECHHHHTTSCHHHHHHHHHHHHTT--CCCHHH--HHHHHHHHHHHTTC
T ss_pred             ----CCCCCCEEECCCEEEEEECCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHC--CCCHHH--HHHHHHHHHHHCCC
T ss_conf             ----6777781752476999981799809999788733178879999999998743--799999--99999999987699


Q ss_pred             CCHHCCCCCCCCCCCCCHHHHCCCCCCCCCCEEEEEEECCCCC
Q ss_conf             3001001454333452012101578876685688889846677
Q 002536          844 RLLASHCCNLQLSFGEESEIRHFATGLYHVIATEQVLFFLLLS  886 (911)
Q Consensus       844 ~~~~~~~~~~~~d~~eLl~ip~g~RRky~DDITVIVI~L~~~~  886 (911)
                                                  .||||||||.|....
T Consensus       287 ----------------------------~DNiTvivv~~~~~~  301 (307)
T 2p8e_A          287 ----------------------------RDNMSIVLVCFSNEG  301 (307)
T ss_dssp             ----------------------------CSCEEEEEEEC----
T ss_pred             ----------------------------CCCEEEEEEECCCCC
T ss_conf             ----------------------------788099999878877


No 5  
>2i0o_A Ser/Thr phosphatase; beta sandwich, structural genomics, PSI, protei structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Anopheles gambiae}
Probab=1.00  E-value=1  Score=310.38  Aligned_cols=244  Identities=23%  Similarity=0.316  Sum_probs=185.4

Q ss_pred             CCEEEEEEEECCCCCHHHHHHHHHHHCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-H---H-------CCCC
Q ss_conf             882799999647772379999999615100211799997899999999999999999999999-7---5-------0498
Q 002536          535 RKKLFPWSYDWHREEPCIDERMVESSGPIRKCKSGIIDHDAVLRAMAQALESTEEAYMEMVEK-A---L-------DTNP  603 (911)
Q Consensus       535 ~~~~ffgVfDGHGG~~~~~s~~v~e~L~~~l~~sg~~d~e~Vl~AL~rAl~~teealle~~~k-~---l-------~~np  603 (911)
                      ....||+|||||||.  .++.++.+.+...+..........+.++|.++|..+++.+.+.... .   +       ...+
T Consensus        49 ~~~~l~~V~DGhGG~--~~a~~as~~~~~~l~~~~~~~~~~~~~~l~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  126 (304)
T 2i0o_A           49 DQCSFFAVYDGHGGA--EVAQYCSLHLPTFLKTVEAYGRKEFEKALKEAFLGFDATLLQEKVIEELKVLSGDSAGSDAEP  126 (304)
T ss_dssp             TTEEEEEEEECSSCS--HHHHHHHHHHHHHHHHSHHHHTTCHHHHHHHHHHHHHHHTTSHHHHHHHHHHHCC-----CCT
T ss_pred             CCEEEEEEECCCCCH--HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf             984899998499988--999999999999998535125314999999999999899974145777765302334423467


Q ss_pred             CCCCCCCEEEEEEEECCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf             64579944999999799599998456619999727999999998765542223421135666643100135876532100
Q 002536          604 ELALMGSCVLVMLMKDQDVYVMNLGDSRAILAQERPNDRHPNPSFLKDDSRHKNRSRESLVRMELDRISEESPMHNQNCQ  683 (911)
Q Consensus       604 ela~sGSTalVvLI~g~~LYVANVGDSRAIL~r~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~l~ri~eE~p~~~~~~~  683 (911)
                       ...||||++++++.++.+|++||||||||+++.+                                             
T Consensus       127 -~~~~GtT~~~~~i~~~~l~vanvGDSRa~l~r~g---------------------------------------------  160 (304)
T 2i0o_A          127 -GKDSGCTAVVALLHGKDLYVANAGDSRCVVCRNG---------------------------------------------  160 (304)
T ss_dssp             -TTSCEEEEEEEEEETTEEEEEEESSCEEEEEETT---------------------------------------------
T ss_pred             -CCCCCCCEEEEEEECCEEEEEECCCCEEEEEECC---------------------------------------------
T ss_conf             -7789841799999899799998048579999899---------------------------------------------


Q ss_pred             CCCCCCCCCHHHCCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf             01355664101102442499925469988399999998409999740214620484001233478876797604778775
Q 002536          684 VNMMNKNRDISICRLKMRAVQLSTDHSTSVEEEIIRIKAEHPDDSQAVFNDRVKGQLKVTRAFGAGFLKKPTCNEALLEM  763 (911)
Q Consensus       684 ~~~~~~~~~~~~~~~~l~a~qLT~DHS~s~eeE~~RI~~egpdd~~~I~ndRVkG~L~VTRAfGD~~LKqpk~N~~Lle~  763 (911)
                                       .+.+||.||++..+.|+.||..+++...   .++|++|.+.+||||||..+|....       
T Consensus       161 -----------------~~~~LT~DH~~~~~~e~~rI~~~gg~v~---~~~rv~g~l~ltRalGd~~~k~~~~-------  213 (304)
T 2i0o_A          161 -----------------KALEMSFDHKPEDTVEYQRIEKAGGRVT---LDGRVNGGLNLSRAIGDHGYKMNKS-------  213 (304)
T ss_dssp             -----------------EEEECCCCCCTTSHHHHHHHHHTTCCBC---TTSCBTTSCSCSBCEECGGGCCCTT-------
T ss_pred             -----------------EEEECCCCCCCCCHHHHHHHHHCCCEEE---ECCEECCCEECCCCCCCHHHCCCCC-------
T ss_conf             -----------------9889387769938779999996799898---6994767565331445997725866-------


Q ss_pred             HHHCCCCCCCCEEECCCCEEEEECCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCC
Q ss_conf             45135799994121652149982279949999867458978989999999985531999991899999999999998199
Q 002536          764 FRVDYVGNAPYVSCIPSIVHHRLSSSDRFLVLSSDGLYQYFSNEEVVAHVTWFMENVPEGDPAQYLIAELLFRAAKKNDR  843 (911)
Q Consensus       764 fri~yigt~PyIsaePdI~~~kL~~~D~FLILASDGLwD~LSneEVv~iV~~~i~~~~~gdpaq~LiaelL~raAkk~G~  843 (911)
                          .....++|+++|++..++|.++|.|||||||||||+|+++|+++++...+.. +..++.+  +++.|+..|..++.
T Consensus       214 ----l~~~~~~v~~~pdi~~~~l~~~D~fllL~SDGl~d~l~~~ei~~~v~~~~~~-~~~~~~~--~a~~L~~~a~~~~~  286 (304)
T 2i0o_A          214 ----LPAEEQMISALPDIEKITVGPEDEFMVLACDGIWNFMTSEQVVQFVQERINK-PGMKLSK--ICEELFDHCLAPHT  286 (304)
T ss_dssp             ----SCGGGSSSBCCCEEEEEECCTTEEEEEEECHHHHTTCCHHHHHHHHHHHHTS-TTCCHHH--HHHHHHHHHC----
T ss_pred             ----CCCCCCEEEEECEEEEEECCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHH-CCCCHHH--HHHHHHHHHHHHHH
T ss_conf             ----7766781773176999981899819999776732368989999999999861-5899999--99999999987540


Q ss_pred             CCHHCCCCCCCCCCCCCHHHHCCCC-CCCCCCEEEEEEECC
Q ss_conf             3001001454333452012101578-876685688889846
Q 002536          844 RLLASHCCNLQLSFGEESEIRHFAT-GLYHVIATEQVLFFL  883 (911)
Q Consensus       844 ~~~~~~~~~~~~d~~eLl~ip~g~R-Rky~DDITVIVI~L~  883 (911)
                                             .. +...||||||||.|.
T Consensus       287 -----------------------~g~~g~~DNiTvivv~~~  304 (304)
T 2i0o_A          287 -----------------------RGDGTGCDNMTAIIVQFK  304 (304)
T ss_dssp             -------------------------------CEEEEEEEEC
T ss_pred             -----------------------CCCCCCCCCEEEEEEEEC
T ss_conf             -----------------------268998898089999969


No 6  
>1a6q_A Phosphatase 2C; catalytic mechanism, metalloenzyme, transductuin, hydrolase; 2.00A {Homo sapiens} SCOP: a.159.1.1 d.219.1.1 PDB: 3fxk_A 3fxj_A 3fxl_A* 3fxm_A* 3fxo_A
Probab=1.00  E-value=1  Score=308.27  Aligned_cols=236  Identities=23%  Similarity=0.245  Sum_probs=192.4

Q ss_pred             CEEEEEEEECCCCCHHHHHHHHHHHCCHHHHC-----C--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf             82799999647772379999999615100211-----7--9999789999999999999999999999975049864579
Q 002536          536 KKLFPWSYDWHREEPCIDERMVESSGPIRKCK-----S--GIIDHDAVLRAMAQALESTEEAYMEMVEKALDTNPELALM  608 (911)
Q Consensus       536 ~~~ffgVfDGHGG~~~~~s~~v~e~L~~~l~~-----s--g~~d~e~Vl~AL~rAl~~teealle~~~k~l~~npela~s  608 (911)
                      ...||+|||||||.  .++.++...+...+..     .  .......+..+|.+||..+++.+.+....    .+....|
T Consensus        52 ~~~lf~V~DGhGG~--~aa~~as~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~af~~~n~~i~~~~~~----~~~~~~~  125 (382)
T 1a6q_A           52 SWSFFAVYDGHAGS--QVAKYCCEHLLDHITNNQDFKGSAGAPSVENVKNGIRTGFLEIDEHMRVMSEK----KHGADRS  125 (382)
T ss_dssp             EEEEEEEEEEESCS--HHHHHHHHHHHHHHHTSHHHHCSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHH----TTCCCCC
T ss_pred             CEEEEEEECCCCCH--HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH----CCCCCCC
T ss_conf             76999998588868--99999999999999850665405777777899999999999999999864540----3577888


Q ss_pred             CCEEEEEEEECCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf             94499999979959999845661999972799999999876554222342113566664310013587653210001355
Q 002536          609 GSCVLVMLMKDQDVYVMNLGDSRAILAQERPNDRHPNPSFLKDDSRHKNRSRESLVRMELDRISEESPMHNQNCQVNMMN  688 (911)
Q Consensus       609 GSTalVvLI~g~~LYVANVGDSRAIL~r~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~l~ri~eE~p~~~~~~~~~~~~  688 (911)
                      |||++++++.++.+|++|||||||||++.+                                                  
T Consensus       126 GtT~~~~li~~~~l~vanvGDSRayl~r~g--------------------------------------------------  155 (382)
T 1a6q_A          126 GSTAVGVLISPQHTYFINCGDSRGLLCRNR--------------------------------------------------  155 (382)
T ss_dssp             EECEEEEEECSSEEEEEEESSCEEEEEETT--------------------------------------------------
T ss_pred             CCEEEEEEEECCEEEEEECCCCEEEEEECC--------------------------------------------------
T ss_conf             642999999899489998478759999799--------------------------------------------------


Q ss_pred             CCCCHHHCCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCC
Q ss_conf             66410110244249992546998839999999840999974021462048400123347887679760477877545135
Q 002536          689 KNRDISICRLKMRAVQLSTDHSTSVEEEIIRIKAEHPDDSQAVFNDRVKGQLKVTRAFGAGFLKKPTCNEALLEMFRVDY  768 (911)
Q Consensus       689 ~~~~~~~~~~~l~a~qLT~DHS~s~eeE~~RI~~egpdd~~~I~ndRVkG~L~VTRAfGD~~LKqpk~N~~Lle~fri~y  768 (911)
                                  .+.+||.||++..+.|+.||..+|    ..+...|++|.|.+||||||..+|....           .
T Consensus       156 ------------~~~~LT~DHs~~~~~E~~RI~~~g----g~v~~~Rv~g~l~ltRalGd~~~K~~~~-----------~  208 (382)
T 1a6q_A          156 ------------KVHFFTQDHKPSNPLEKERIQNAG----GSVMIQRVNGSLAVSRALGDFDYKCVHG-----------K  208 (382)
T ss_dssp             ------------EEEEECCCCCTTSHHHHHHHHHTT----CCEETTEETTTBSCSBCEECGGGSCCTT-----------C
T ss_pred             ------------CEEEECCCCCCCCHHHHHHHHHCC----CEEECCCCCCCEEEEEECCCHHHCCCCC-----------C
T ss_conf             ------------157817899899988999998669----6775133158410101137675404666-----------7


Q ss_pred             CCCCCCEEECCCCEEEEEC-CCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCHH
Q ss_conf             7999941216521499822-799499998674589789899999999855319999918999999999999981993001
Q 002536          769 VGNAPYVSCIPSIVHHRLS-SSDRFLVLSSDGLYQYFSNEEVVAHVTWFMENVPEGDPAQYLIAELLFRAAKKNDRRLLA  847 (911)
Q Consensus       769 igt~PyIsaePdI~~~kL~-~~D~FLILASDGLwD~LSneEVv~iV~~~i~~~~~gdpaq~LiaelL~raAkk~G~~~~~  847 (911)
                      ....|+|+++|++..+.+. ++|.|||||||||||+|+++|+++++...+..  ..++..  +++.|+..|..+|.    
T Consensus       209 ~~~~~~v~~~Pdv~~~~l~~~~dd~llLaSDGlwd~ls~~ei~~~v~~~~~~--~~~~~~--~a~~Lv~~A~~~g~----  280 (382)
T 1a6q_A          209 GPTEQLVSPEPEVHDIERSEEDDQFIILACDGIWDVMGNEELCDFVRSRLEV--TDDLEK--VCNEVVDTCLYKGS----  280 (382)
T ss_dssp             CGGGSSSBCCCEEEEEECCTTTEEEEEEECHHHHTTSCHHHHHHHHHHHHTT--CCCHHH--HHHHHHHHHHHTTC----
T ss_pred             CCCCCEEEEEEEEEEEECCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHC--CCCHHH--HHHHHHHHHHHCCC----
T ss_conf             8766736664369999803789839999666756788759999999998744--798999--99999999986299----


Q ss_pred             CCCCCCCCCCCCCHHHHCCCCCCCCCCEEEEEEECCCCC
Q ss_conf             001454333452012101578876685688889846677
Q 002536          848 SHCCNLQLSFGEESEIRHFATGLYHVIATEQVLFFLLLS  886 (911)
Q Consensus       848 ~~~~~~~~d~~eLl~ip~g~RRky~DDITVIVI~L~~~~  886 (911)
                                              .||||||||.|....
T Consensus       281 ------------------------~DNiTvivv~~~~~~  295 (382)
T 1a6q_A          281 ------------------------RDNMSVILICFPNAP  295 (382)
T ss_dssp             ------------------------CSCEEEEEEECTTSC
T ss_pred             ------------------------CCCEEEEEEEECCCC
T ss_conf             ------------------------688799999915888


No 7  
>3qn1_B Protein phosphatase 2C 16; start domain, BET V domain, PYR/PYL/RCAR, PP2C, abscisic ACI receptor, type 2C protein phosphatase; HET: A8S; 1.80A {Arabidopsis thaliana} PDB: 3zvu_B* 3ujg_B 3nmt_B* 4ds8_B* 3rt0_A 3kb3_B*
Probab=1.00  E-value=1  Score=307.44  Aligned_cols=240  Identities=24%  Similarity=0.222  Sum_probs=185.9

Q ss_pred             CCEEEEEEEECCCCCHHHHHHHHHHHCCHHH----HCC---------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHH---
Q ss_conf             8827999996477723799999996151002----117---------999978999999999999999999999997---
Q 002536          535 RKKLFPWSYDWHREEPCIDERMVESSGPIRK----CKS---------GIIDHDAVLRAMAQALESTEEAYMEMVEKA---  598 (911)
Q Consensus       535 ~~~~ffgVfDGHGG~~~~~s~~v~e~L~~~l----~~s---------g~~d~e~Vl~AL~rAl~~teealle~~~k~---  598 (911)
                      .+..||+|||||||.  .++.++.+.+...+    ...         .......+.++|.++|..+++.+.....+.   
T Consensus        60 ~~~~l~~V~DGhGG~--~~~~~as~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~d~~l~~~~~~~~~~  137 (337)
T 3qn1_B           60 LTGHFFGVYDGHGGH--KVADYCRDRLHFALAEEIERIKDELCKRNTGEGRQVQWDKVFTSCFLTVDGEIEGKIGRAVVG  137 (337)
T ss_dssp             EEEEEEEEEEEESSS--HHHHHHHHHHHHHHHHHHHHTC------------CHHHHHHHHHHHHHHHHHHHTSSCBCCTT
T ss_pred             CCEEEEEEEECCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             772799997088875--699999999999999999763233301455411378999999999998609987532101345


Q ss_pred             ----HCCCCCCCCCCCEEEEEEEECCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf             ----5049864579944999999799599998456619999727999999998765542223421135666643100135
Q 002536          599 ----LDTNPELALMGSCVLVMLMKDQDVYVMNLGDSRAILAQERPNDRHPNPSFLKDDSRHKNRSRESLVRMELDRISEE  674 (911)
Q Consensus       599 ----l~~npela~sGSTalVvLI~g~~LYVANVGDSRAIL~r~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~l~ri~eE  674 (911)
                          .........||||++++++.++.+|++||||||+|+++.+                                    
T Consensus       138 ~~~~~~~~~~~~~~GtT~~~~~i~~~~l~~anvGDSR~~l~r~g------------------------------------  181 (337)
T 3qn1_B          138 SSDKVLEAVASETVGSTAVVALVCSSHIVVSNCGDSRAVLFRGK------------------------------------  181 (337)
T ss_dssp             CSSCBCCCSSCTTCEECEEEEEECSSEEEEEEESSCEEEEEETT------------------------------------
T ss_pred             CCCCCCCCCCCCCCCCEEEEEEEECCEEEEEECCCCEEEEEECC------------------------------------
T ss_conf             54211234556789864999999899899996368479999499------------------------------------


Q ss_pred             CCCCCCCCCCCCCCCCCCHHHCCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             87653210001355664101102442499925469988399999998409999740214620484001233478876797
Q 002536          675 SPMHNQNCQVNMMNKNRDISICRLKMRAVQLSTDHSTSVEEEIIRIKAEHPDDSQAVFNDRVKGQLKVTRAFGAGFLKKP  754 (911)
Q Consensus       675 ~p~~~~~~~~~~~~~~~~~~~~~~~l~a~qLT~DHS~s~eeE~~RI~~egpdd~~~I~ndRVkG~L~VTRAfGD~~LKqp  754 (911)
                                                .+.|||.||++..+.|..||..+++.... ....|++|.|.+||+|||..+|. 
T Consensus       182 --------------------------~~~~lT~DH~~~~~~e~~ri~~~gg~v~~-~~~~r~~g~l~~sRalGd~~~~~-  233 (337)
T 3qn1_B          182 --------------------------EAMPLSVDHKPDREDEYARIENAGGKVIQ-WQGARVFGVLAMSRSIGDRYLKP-  233 (337)
T ss_dssp             --------------------------EEEESCCCCCTTSHHHHHHHHHTTCCEEE-SSSEEETTTBSCSBCEECGGGTT-
T ss_pred             --------------------------EEEEECCCCCCCCHHHHHHHHHCCCEEEE-CCCCEECCCCCCCCCCCCCCCCC-
T ss_conf             --------------------------75154577888998999999976984896-17840158640031216401268-


Q ss_pred             CCHHHHHHHHHHCCCCCCCCEEECCCCEEEEECCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHC-------------CC
Q ss_conf             60477877545135799994121652149982279949999867458978989999999985531-------------99
Q 002536          755 TCNEALLEMFRVDYVGNAPYVSCIPSIVHHRLSSSDRFLVLSSDGLYQYFSNEEVVAHVTWFMEN-------------VP  821 (911)
Q Consensus       755 k~N~~Lle~fri~yigt~PyIsaePdI~~~kL~~~D~FLILASDGLwD~LSneEVv~iV~~~i~~-------------~~  821 (911)
                                         +++++|++..+.+.+.+.|||||||||||+++++|+++++...+..             ..
T Consensus       234 -------------------~v~~~pdv~~~~~~~~~d~llL~SDGl~d~l~~~ei~~~~~~~~~~~~~~~~~~~~~~~~~  294 (337)
T 3qn1_B          234 -------------------YVIPEPEVTFMPRSREDECLILASDGLWDVMNNQEVCEIARRRILMWHKKNGAPPLAERGK  294 (337)
T ss_dssp             -------------------TSBCCCEEEEEECCTTEEEEEEECHHHHTTSCHHHHHHHHHHHHHHHHHHHCCC----CCS
T ss_pred             -------------------CCCCCCEEEEEEECCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf             -------------------8787666999970799979999844842488889999999998643111235553111134


Q ss_pred             CCCHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCCCCCCCHHHHCCCCCCCCCCEEEEEEECCCCCC
Q ss_conf             999189999999999999819930010014543334520121015788766856888898466777
Q 002536          822 EGDPAQYLIAELLFRAAKKNDRRLLASHCCNLQLSFGEESEIRHFATGLYHVIATEQVLFFLLLST  887 (911)
Q Consensus       822 ~gdpaq~LiaelL~raAkk~G~~~~~~~~~~~~~d~~eLl~ip~g~RRky~DDITVIVI~L~~~~~  887 (911)
                      ...+....+++.|+..|..+|.                            +||||||||.|.....
T Consensus       295 ~~~~~~~~~a~~Lv~~A~~~g~----------------------------~DNiTvivv~l~~~~~  332 (337)
T 3qn1_B          295 GIDPACQAAADYLSMLALQKGS----------------------------KDNISIIVIDLKAQRK  332 (337)
T ss_dssp             SCCHHHHHHHHHHHHHHHHTTC----------------------------CSCEEEEEEECCSCC-
T ss_pred             CCCHHHHHHHHHHHHHHHHCCC----------------------------CCCEEEEEEEECCCCC
T ss_conf             4670699999999999997399----------------------------9887999999568766


No 8  
>3d8k_A PP2C, protein phosphatase 2C; nysgrc, PSI-II, STR genomics, protein structure initiative, NEW YORK structural research consortium, nysgxrc; 2.71A {Toxoplasma gondii}
Probab=1.00  E-value=1  Score=304.71  Aligned_cols=234  Identities=18%  Similarity=0.152  Sum_probs=186.2

Q ss_pred             CCEEEEEEEECCCCCHHHHHHHHHHHCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEE
Q ss_conf             88279999964777237999999961510021179999789999999999999999999999975049864579944999
Q 002536          535 RKKLFPWSYDWHREEPCIDERMVESSGPIRKCKSGIIDHDAVLRAMAQALESTEEAYMEMVEKALDTNPELALMGSCVLV  614 (911)
Q Consensus       535 ~~~~ffgVfDGHGG~~~~~s~~v~e~L~~~l~~sg~~d~e~Vl~AL~rAl~~teealle~~~k~l~~npela~sGSTalV  614 (911)
                      ....||+|||||||.  .++.++.+.+...+......    ..++|.++|..+++.+....          ..+|||+++
T Consensus        46 ~~~~lf~V~DGhGG~--~aa~~as~~l~~~l~~~~~~----~~~al~~af~~~d~~l~~~~----------~~~GtTa~~  109 (377)
T 3d8k_A           46 PETRVHAMFDGFQGR--HSAMWLAQNVMNYLNDLRDV----NEEEITRQFERMDGDLRAAN----------LPGGSSALI  109 (377)
T ss_dssp             TTEEEEEEEEBSSSS--HHHHHHHHHHHHHHTTCSSS----SHHHHHHHHHHHHHHHHHHT----------CCCCBCEEE
T ss_pred             CCEEEEEEECCCCCH--HHHHHHHHHHHHHHHHHCCC----HHHHHHHHHHHHHHHHHHCC----------CCCCCCEEE
T ss_conf             986999997499848--99999999999999871356----89999999999999998505----------678871489


Q ss_pred             EEEE---------------------------------------------------CCEEEEEECCCCCEEEEEECCCCCC
Q ss_conf             9997---------------------------------------------------9959999845661999972799999
Q 002536          615 MLMK---------------------------------------------------DQDVYVMNLGDSRAILAQERPNDRH  643 (911)
Q Consensus       615 vLI~---------------------------------------------------g~~LYVANVGDSRAIL~r~~~~~~~  643 (911)
                      +++.                                                   ++.+||+|||||||||++.+     
T Consensus       110 ~~i~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~g~ta~a~vali~~~~p~~~~~~~~l~vanvGDSRa~l~r~g-----  184 (377)
T 3d8k_A          110 IFVRYEKKPTEARVVGRQIVPEGAKEFTSVAEALGGPLMPVVAMNFRRDPRAAKGIYTIHVASLGNSRCVLKSGR-----  184 (377)
T ss_dssp             EEEEEESSCCCEEEETTEEECCC---CCCHHHHSSCCCCCCEEECGGGCGGGTTCEEEEEEEEESSCEEEEEETT-----
T ss_pred             EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCEEEEEECCCCEEEEEECC-----
T ss_conf             998504565422233433465443222332223466532200000134533456777699998666628999899-----


Q ss_pred             CCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCEEEECCCCCCCCHHHHHHHHHHC
Q ss_conf             99987655422234211356666431001358765321000135566410110244249992546998839999999840
Q 002536          644 PNPSFLKDDSRHKNRSRESLVRMELDRISEESPMHNQNCQVNMMNKNRDISICRLKMRAVQLSTDHSTSVEEEIIRIKAE  723 (911)
Q Consensus       644 ~~~~~~~~~~~~~~r~~~~~~~~~l~ri~eE~p~~~~~~~~~~~~~~~~~~~~~~~l~a~qLT~DHS~s~eeE~~RI~~e  723 (911)
                                                                               .+.+||.||++.++.|+.||..+
T Consensus       185 ---------------------------------------------------------~~~~LT~DH~~~~~~E~~RI~~~  207 (377)
T 3d8k_A          185 ---------------------------------------------------------TAIHLSTPHTASSHKERHRVQAA  207 (377)
T ss_dssp             ---------------------------------------------------------EEEESSCCCSSSSHHHHHHHHTT
T ss_pred             ---------------------------------------------------------EEEECCCCCCCCCHHHHHHHHHC
T ss_conf             ---------------------------------------------------------99888758898988899999975


Q ss_pred             CCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCEEECCCCEEEEECCCCEEEEEECCCCCCC
Q ss_conf             99997402146204840012334788767976047787754513579999412165214998227994999986745897
Q 002536          724 HPDDSQAVFNDRVKGQLKVTRAFGAGFLKKPTCNEALLEMFRVDYVGNAPYVSCIPSIVHHRLSSSDRFLVLSSDGLYQY  803 (911)
Q Consensus       724 gpdd~~~I~ndRVkG~L~VTRAfGD~~LKqpk~N~~Lle~fri~yigt~PyIsaePdI~~~kL~~~D~FLILASDGLwD~  803 (911)
                      ++.......+.||+|.|.+||||||..+|...           .....+|+|+++|+|..+.|.++| |||||||||||+
T Consensus       208 gg~v~~~~g~~rv~G~l~vtRalGd~~~k~~~-----------~~~~~~~~v~~~Pdv~~~~l~~~D-~llL~SDGl~d~  275 (377)
T 3d8k_A          208 GGVFTTVNGELLLGGVVPMTRAFGSFDFKKGG-----------QGKLQQDLVSAVPDVTTFFAYPGD-DIVAGTAGAFAH  275 (377)
T ss_dssp             TCCEEECSSSEEETTTBSCSBCSSCGGGSCC--------------CCSSCSSBCCCEEEEEEECTTC-EEEEECGGGGCS
T ss_pred             CCEEEECCCCEEECCCEECCEEECCHHHHCCC-----------CCCCCCCCCCCCCCEEEEECCCCC-EEEEEECCCCCC
T ss_conf             98787049947885736113440576653455-----------566556854337827899869999-999997886457


Q ss_pred             CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCCCCCCCHHHHCCCCCCCCCCEEEEEEECC
Q ss_conf             89899999999855319999918999999999999981993001001454333452012101578876685688889846
Q 002536          804 FSNEEVVAHVTWFMENVPEGDPAQYLIAELLFRAAKKNDRRLLASHCCNLQLSFGEESEIRHFATGLYHVIATEQVLFFL  883 (911)
Q Consensus       804 LSneEVv~iV~~~i~~~~~gdpaq~LiaelL~raAkk~G~~~~~~~~~~~~~d~~eLl~ip~g~RRky~DDITVIVI~L~  883 (911)
                      |+++|++..+...+. ....++..  +++.|+..|.++|.                            .||||||||.|.
T Consensus       276 ls~~e~v~~v~~~~~-~~~~~~~~--~a~~Lv~~A~~~g~----------------------------~DNiTvivv~~~  324 (377)
T 3d8k_A          276 FRSHAAIAAAIALYP-VSPETVLD--AAKAMVVNAKRRKV----------------------------TKNISTFVRHLP  324 (377)
T ss_dssp             CSSHHHHHHHHTTSC-CCGGGHHH--HHHHHHHTTTTSSC----------------------------CSCCCEEEEECC
T ss_pred             CCCHHHHHHHHHHHH-CCCCCHHH--HHHHHHHHHHHCCC----------------------------CCCEEEEEEEEC
T ss_conf             784999999998732-25889999--99999999986699----------------------------999899999951


Q ss_pred             CCCCCC
Q ss_conf             677756
Q 002536          884 LLSTKM  889 (911)
Q Consensus       884 ~~~~~~  889 (911)
                      ......
T Consensus       325 ~~~~~~  330 (377)
T 3d8k_A          325 ESRTRS  330 (377)
T ss_dssp             SSCCCC
T ss_pred             CCCCHH
T ss_conf             876322


No 9  
>2i44_A Serine-threonine phosphatase 2C; PSI-2, 8817Z, structural genomics, protein structure initiative; 2.04A {Toxoplasma gondii}
Probab=1.00  E-value=1  Score=294.25  Aligned_cols=245  Identities=19%  Similarity=0.182  Sum_probs=181.7

Q ss_pred             CCEEEEEEEECCCCCHHHHHHHHHHHCCHHHHCC-----------CCC--------CHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             8827999996477723799999996151002117-----------999--------978999999999999999999999
Q 002536          535 RKKLFPWSYDWHREEPCIDERMVESSGPIRKCKS-----------GII--------DHDAVLRAMAQALESTEEAYMEMV  595 (911)
Q Consensus       535 ~~~~ffgVfDGHGG~~~~~s~~v~e~L~~~l~~s-----------g~~--------d~e~Vl~AL~rAl~~teealle~~  595 (911)
                      ....||+|||||||.  .++.++.+.+...+...           ...        ....+.++|.+||..+++.+++..
T Consensus        51 ~~~~l~~V~DGhGG~--~~~~~as~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~i~~~~  128 (324)
T 2i44_A           51 DDCAFFGVFDGTVGD--FASENVKDLVVPQLISSPAWQEVTEMLRSDVPATEVDEKLPQLLDQAVDDMYKNADNELVKMC  128 (324)
T ss_dssp             SSEEEEEEEEEESSS--HHHHHHHHHHHHHHHTCHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEEEECCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             875999996999836--999999999999997426778888876314774322222322599999999999999999877


Q ss_pred             HHHHCCCCCCCCCCCEEEEEEEECCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf             99750498645799449999997995999984566199997279999999987655422234211356666431001358
Q 002536          596 EKALDTNPELALMGSCVLVMLMKDQDVYVMNLGDSRAILAQERPNDRHPNPSFLKDDSRHKNRSRESLVRMELDRISEES  675 (911)
Q Consensus       596 ~k~l~~npela~sGSTalVvLI~g~~LYVANVGDSRAIL~r~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~l~ri~eE~  675 (911)
                      .+.   ......||||+  +++.++++|++|||||||||++...+                                   
T Consensus       129 ~~~---~~~~~g~gtt~--~~i~~~~l~vanvGDSRa~l~r~~~~-----------------------------------  168 (324)
T 2i44_A          129 EQL---NKDYASSTSVT--AVLAKGFVAVGHLGDSRIAMGVETPN-----------------------------------  168 (324)
T ss_dssp             HHT---TCSSCEECEEE--EEEETTEEEEEEESSCEEEEEEEETT-----------------------------------
T ss_pred             HHC---CCCCCCCCEEE--EEEECCEEEEEECCCCEEEEEECCCC-----------------------------------
T ss_conf             632---77778877089--99979959999736864899961599-----------------------------------


Q ss_pred             CCCCCCCCCCCCCCCCCHHHCCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCCCE----EECCCCCCCCCCCCCCCC---
Q ss_conf             7653210001355664101102442499925469988399999998409999740----214620484001233478---
Q 002536          676 PMHNQNCQVNMMNKNRDISICRLKMRAVQLSTDHSTSVEEEIIRIKAEHPDDSQA----VFNDRVKGQLKVTRAFGA---  748 (911)
Q Consensus       676 p~~~~~~~~~~~~~~~~~~~~~~~l~a~qLT~DHS~s~eeE~~RI~~egpdd~~~----I~ndRVkG~L~VTRAfGD---  748 (911)
                                             ++.+.|||.||++..+.|++||.++|+.....    ....++.|.|.+||||||   
T Consensus       169 -----------------------g~~~~~LT~DH~~~~~~E~~Ri~~~Gg~v~~~~~~~~~~~~~~g~l~~sra~Gd~p~  225 (324)
T 2i44_A          169 -----------------------GLNCEFLTVDHKPDMPHEKLRIMRNGGSVEYLHNHNNKPFIRGGDFSFRKSRGEQPM  225 (324)
T ss_dssp             -----------------------EEEEEESCCCCCTTSHHHHHHHHHTTCEEECCTTCTTSCEEECTTHHHHHHTTCCCC
T ss_pred             -----------------------CCEEEECCCCCCCCCHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCHHHCCCCCC
T ss_conf             -----------------------966888899999948779999997698798334566777510475132110287532


Q ss_pred             -CCCCCCCCHHHHHHHHHHCCCCCCCCEEECCCCEEEEECCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCHHH
Q ss_conf             -8767976047787754513579999412165214998227994999986745897898999999998553199999189
Q 002536          749 -GFLKKPTCNEALLEMFRVDYVGNAPYVSCIPSIVHHRLSSSDRFLVLSSDGLYQYFSNEEVVAHVTWFMENVPEGDPAQ  827 (911)
Q Consensus       749 -~~LKqpk~N~~Lle~fri~yigt~PyIsaePdI~~~kL~~~D~FLILASDGLwD~LSneEVv~iV~~~i~~~~~gdpaq  827 (911)
                       ..+|+..-          ......++|+++|++..++|.++|+|||||||||||+|+++|+++++...+..  ..++.+
T Consensus       226 ~~~~~~~~g----------~~~~~~~~v~~~pdv~~~~l~~~d~~llLaSDGl~d~ls~~ei~~~v~~~~~~--~~~~~~  293 (324)
T 2i44_A          226 QLQYSRAFG----------GKDLKMYGLSNQPDVRVVRVTPQHRVMILATDGLWDVMSAAQAVEIAMQARQE--GRNPAQ  293 (324)
T ss_dssp             CBSSSBCEE----------CGGGTTTTCBCCCEEEEEECCTTEEEEEEECHHHHTTCCHHHHHHHHHHHHHT--TCCHHH
T ss_pred             CCEECCCCC----------CCCCCCCEEEECCEEEEEECCCCCEEEEEECCCHHCCCCHHHHHHHHHHHHHC--CCCHHH
T ss_conf             100022457----------75666893762478999985898749999767012157989999999998755--898779


Q ss_pred             HHHHHHHHHHHHHCCCCCHHCCCCCCCCCCCCCHHHHCCCCCCCCCCEEEEEEECCC
Q ss_conf             999999999999819930010014543334520121015788766856888898466
Q 002536          828 YLIAELLFRAAKKNDRRLLASHCCNLQLSFGEESEIRHFATGLYHVIATEQVLFFLL  884 (911)
Q Consensus       828 ~LiaelL~raAkk~G~~~~~~~~~~~~~d~~eLl~ip~g~RRky~DDITVIVI~L~~  884 (911)
                      .++++.|++.|..+|.                            .||||||||.|..
T Consensus       294 ~~~a~~L~~~A~~~g~----------------------------~DNiTvivv~~~~  322 (324)
T 2i44_A          294 ALVEMTLAEQQSRNQS----------------------------ADNITAMTVFFKK  322 (324)
T ss_dssp             HHHHHHHHHHHHTTCC----------------------------CCCEEEEEEEEC-
T ss_pred             HHHHHHHHHHHHHCCC----------------------------CCCCEEEEEEEEC
T ss_conf             9999999999986699----------------------------8897799999508


No 10 
>2isn_A NYSGXRC-8828Z, phosphatase; pathogenic strain, praseodymium, sulfate structural genomics, PSI-2, protein structure initiative; 1.90A {Toxoplasma gondii}
Probab=1.00  E-value=1  Score=293.20  Aligned_cols=233  Identities=21%  Similarity=0.226  Sum_probs=183.1

Q ss_pred             CCEEEEEEEECCCCCHHHHHHHHHHHCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEE
Q ss_conf             88279999964777237999999961510021179999789999999999999999999999975049864579944999
Q 002536          535 RKKLFPWSYDWHREEPCIDERMVESSGPIRKCKSGIIDHDAVLRAMAQALESTEEAYMEMVEKALDTNPELALMGSCVLV  614 (911)
Q Consensus       535 ~~~~ffgVfDGHGG~~~~~s~~v~e~L~~~l~~sg~~d~e~Vl~AL~rAl~~teealle~~~k~l~~npela~sGSTalV  614 (911)
                      +...||+|||||||.  .++.++.+.+...+.+.....    ..+|.++|..+++.+++..    ..   ...||||+++
T Consensus        41 ~~~~lf~VfDGHGG~--~as~~a~~~l~~~l~~~~~~~----~~~l~~a~~~~d~~i~~~~----~~---~~~~GtT~v~  107 (364)
T 2isn_A           41 PNVRIKAVFDGHAGE--ATSQYCAKHAAKHLGKLSEFT----FAEVKKACLSLDAEIIRKL----GP---KHVAGSTGII  107 (364)
T ss_dssp             CCEEEEEEEEEESCS--HHHHHHHHHHHHHHTTCSSCC----HHHHHHHHHHHHHHHHHHH----CS---SSCCEECEEE
T ss_pred             CCEEEEEEEECCCCH--HHHHHHHHHHHHHHHHHHCCC----HHHHHHHHHHHHHHHHHHC----CC---CCCCCCCEEH
T ss_conf             981899999798989--999999999999998754035----8899999999999998741----46---7788763132


Q ss_pred             EEEEC------------------------------------------------------------CEEEEEECCCCCEEE
Q ss_conf             99979------------------------------------------------------------959999845661999
Q 002536          615 MLMKD------------------------------------------------------------QDVYVMNLGDSRAIL  634 (911)
Q Consensus       615 vLI~g------------------------------------------------------------~~LYVANVGDSRAIL  634 (911)
                      +++.+                                                            .++|++||||||||+
T Consensus       108 ~~i~~~~~p~~~~~~g~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~vanvGDSRayl  187 (364)
T 2isn_A          108 VAIERLSAPVVENVVGREIVPRAHEETFVPLEKLIQEEEEAEHPELVGRYPRVPDVQQKTIPAGSFLVTAINIGDSRATL  187 (364)
T ss_dssp             EEEEECSSCEEEEEETTEECCC-----CCCHHHHHHHHHHC-----CCSSCCCCCCEEEEECTTCEEEEEEEESSCEEEE
T ss_pred             HHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEE
T ss_conf             11331455311112331123333321012344442100101342001443333323443212576679999872687999


Q ss_pred             EE-ECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCEEEECCCCCCCCH
Q ss_conf             97-27999999998765542223421135666643100135876532100013556641011024424999254699883
Q 002536          635 AQ-ERPNDRHPNPSFLKDDSRHKNRSRESLVRMELDRISEESPMHNQNCQVNMMNKNRDISICRLKMRAVQLSTDHSTSV  713 (911)
Q Consensus       635 ~r-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~l~ri~eE~p~~~~~~~~~~~~~~~~~~~~~~~l~a~qLT~DHS~s~  713 (911)
                      ++ .+                                                              .+.|||.||++..
T Consensus       188 ~~r~g--------------------------------------------------------------~~~~LT~DH~~~~  205 (364)
T 2isn_A          188 IHSDG--------------------------------------------------------------GLTRLSKDHKPNH  205 (364)
T ss_dssp             ECTTS--------------------------------------------------------------CEEECCCCCCTTS
T ss_pred             EEECC--------------------------------------------------------------EEEECCCCCCCCC
T ss_conf             94099--------------------------------------------------------------8898676788987


Q ss_pred             HHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCEEECCCCEEEEECCCCEEE
Q ss_conf             99999998409999740214620484001233478876797604778775451357999941216521499822799499
Q 002536          714 EEEIIRIKAEHPDDSQAVFNDRVKGQLKVTRAFGAGFLKKPTCNEALLEMFRVDYVGNAPYVSCIPSIVHHRLSSSDRFL  793 (911)
Q Consensus       714 eeE~~RI~~egpdd~~~I~ndRVkG~L~VTRAfGD~~LKqpk~N~~Lle~fri~yigt~PyIsaePdI~~~kL~~~D~FL  793 (911)
                      +.|+.||..+++.... ....|++|.|.+||||||..+|...           ......++|+++|++..+.+.++| ||
T Consensus       206 ~~e~~rI~~~gG~v~~-~~~~rv~g~l~ltRalGd~~~k~~~-----------~l~~~~~~v~~~Pdv~~~~l~~~D-~l  272 (364)
T 2isn_A          206 PTEASRIEKAGGSVET-FDVPRVDGVLALSRAFGDSDFKMNP-----------NLPPEEQKVIAVPDVRQFYALSSD-LL  272 (364)
T ss_dssp             HHHHHHHHHTTCCEEE-SSSEEETTTBSCSBCEECGGGSCCC-----------SSCGGGSSSBCCCEEEEEEECTTC-EE
T ss_pred             HHHHHHHHHCCCEEEC-CCCCCCCCCEEEEEEECCHHHCCCC-----------CCCCCCCCEEEEEEEEEEECCCCC-EE
T ss_conf             8899999975986842-7876347853247872333321464-----------567556845787579999879999-99


Q ss_pred             EEECCCCCCCCC--HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCCCCCCCHHHHCCCCCCC
Q ss_conf             998674589789--899999999855319999918999999999999981993001001454333452012101578876
Q 002536          794 VLSSDGLYQYFS--NEEVVAHVTWFMENVPEGDPAQYLIAELLFRAAKKNDRRLLASHCCNLQLSFGEESEIRHFATGLY  871 (911)
Q Consensus       794 ILASDGLwD~LS--neEVv~iV~~~i~~~~~gdpaq~LiaelL~raAkk~G~~~~~~~~~~~~~d~~eLl~ip~g~RRky  871 (911)
                      |||||||||+++  ++++++++...+.. ...++..  +++.|+..|..+|.                            
T Consensus       273 lL~SDGl~d~l~~~~~~v~~~~~~~~~~-~~~~~~~--~a~~Lv~~A~~~g~----------------------------  321 (364)
T 2isn_A          273 LLACDGVYEPSGMDWAYVRDLTVAEMQR-SKGDLEE--VAARVMDYAYDMNS----------------------------  321 (364)
T ss_dssp             EEECHHHHCSSSCCHHHHHHHHHHHHHH-TTSCHHH--HHHHHHHHHHHTTC----------------------------
T ss_pred             EEECCCCCCCCCCCHHHHHHHHHHHHHH-CCCCHHH--HHHHHHHHHHHCCC----------------------------
T ss_conf             9986887777777789999999999764-5799999--99999999986699----------------------------


Q ss_pred             CCCEEEEEEECCCCC
Q ss_conf             685688889846677
Q 002536          872 HVIATEQVLFFLLLS  886 (911)
Q Consensus       872 ~DDITVIVI~L~~~~  886 (911)
                      .||||||||.|....
T Consensus       322 ~DNiTvivv~~~~~~  336 (364)
T 2isn_A          322 QDNISVMLVAFHNQE  336 (364)
T ss_dssp             CSCEEEEEEEECSSC
T ss_pred             CCCEEEEEEECCCCC
T ss_conf             999899999907988


Done!