Query 002537
Match_columns 911
No_of_seqs 345 out of 789
Neff 4.0
Searched_HMMs 46136
Date Fri Mar 29 01:59:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002537.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002537hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0323 TFIIF-interacting CTD 100.0 6.2E-61 1.3E-65 548.9 15.1 537 36-775 5-548 (635)
2 TIGR02250 FCP1_euk FCP1-like p 99.9 8.6E-28 1.9E-32 236.3 8.8 102 255-369 52-156 (156)
3 KOG3732 Staufen and related do 99.9 5.4E-23 1.2E-27 221.6 18.3 172 705-908 38-211 (339)
4 TIGR02251 HIF-SF_euk Dullard-l 99.8 2.2E-18 4.7E-23 170.0 12.0 117 256-395 37-159 (162)
5 PF03031 NIF: NLI interacting 99.8 2E-18 4.3E-23 166.7 10.5 118 255-394 30-153 (159)
6 PHA02701 ORF020 dsRNA-binding 99.6 6.4E-15 1.4E-19 149.0 10.3 70 703-772 106-177 (183)
7 smart00577 CPDc catalytic doma 99.6 1.7E-14 3.6E-19 139.8 11.9 102 254-370 38-145 (148)
8 PHA03103 double-strand RNA-bin 99.5 5.1E-14 1.1E-18 143.0 10.3 68 704-772 108-177 (183)
9 COG5190 FCP1 TFIIF-interacting 99.5 1.2E-14 2.6E-19 161.5 5.6 89 252-352 67-158 (390)
10 smart00358 DSRM Double-strande 99.5 2.3E-13 4.9E-18 113.0 9.4 64 707-770 1-66 (67)
11 cd00048 DSRM Double-stranded R 99.5 3.8E-13 8.3E-18 111.3 9.4 65 706-770 1-68 (68)
12 PF00035 dsrm: Double-stranded 99.4 7.1E-13 1.5E-17 110.8 10.4 64 707-770 1-67 (67)
13 PF00035 dsrm: Double-stranded 99.4 3.5E-13 7.7E-18 112.6 8.4 66 839-906 1-67 (67)
14 smart00358 DSRM Double-strande 99.4 7.8E-13 1.7E-17 109.8 8.2 66 839-906 1-66 (67)
15 PRK12371 ribonuclease III; Rev 99.4 1.1E-12 2.4E-17 137.7 10.0 68 705-772 161-231 (235)
16 cd00048 DSRM Double-stranded R 99.4 1.6E-12 3.5E-17 107.5 8.5 67 838-906 1-68 (68)
17 KOG1605 TFIIF-interacting CTD 99.4 2.6E-13 5.6E-18 144.6 3.4 119 256-393 126-246 (262)
18 PHA03103 double-strand RNA-bin 99.3 4.3E-12 9.3E-17 129.1 9.4 71 835-908 107-177 (183)
19 COG0571 Rnc dsRNA-specific rib 99.3 3.9E-12 8.5E-17 133.9 9.5 69 705-773 161-232 (235)
20 PHA02701 ORF020 dsRNA-binding 99.3 2.1E-11 4.6E-16 123.8 13.2 72 835-908 106-177 (183)
21 KOG2777 tRNA-specific adenosin 99.3 8.1E-12 1.8E-16 143.2 9.5 145 722-910 10-156 (542)
22 PRK14718 ribonuclease III; Pro 99.3 1.2E-11 2.6E-16 139.1 9.7 67 705-771 151-221 (467)
23 PRK12372 ribonuclease III; Rev 99.2 2.7E-11 5.9E-16 135.4 9.9 67 706-772 152-222 (413)
24 PRK00102 rnc ribonuclease III; 99.2 1.2E-10 2.6E-15 119.8 9.9 69 704-772 157-228 (229)
25 TIGR02245 HAD_IIID1 HAD-superf 99.1 2.4E-10 5.2E-15 117.6 10.9 127 258-393 42-178 (195)
26 TIGR02191 RNaseIII ribonucleas 99.1 3.1E-10 6.7E-15 115.8 9.3 67 704-770 151-220 (220)
27 TIGR02191 RNaseIII ribonucleas 98.9 2.6E-09 5.7E-14 109.0 9.1 70 835-906 150-220 (220)
28 PRK00102 rnc ribonuclease III; 98.9 3.1E-09 6.7E-14 109.5 9.0 71 835-907 156-227 (229)
29 KOG4334 Uncharacterized conser 98.9 8.1E-09 1.8E-13 116.5 10.4 182 700-907 370-557 (650)
30 PRK12371 ribonuclease III; Rev 98.9 5.7E-09 1.2E-13 109.9 8.5 70 836-907 160-230 (235)
31 KOG3732 Staufen and related do 98.8 6.1E-09 1.3E-13 113.9 7.7 107 751-909 1-107 (339)
32 PRK14718 ribonuclease III; Pro 98.7 3.7E-08 8.1E-13 111.6 8.6 73 836-909 150-223 (467)
33 PF14709 DND1_DSRM: double str 98.7 4.1E-08 8.8E-13 88.1 6.6 69 837-906 1-79 (80)
34 COG0571 Rnc dsRNA-specific rib 98.6 6.8E-08 1.5E-12 102.2 8.7 72 837-909 161-232 (235)
35 PRK12372 ribonuclease III; Rev 98.6 8.4E-08 1.8E-12 108.0 8.7 72 836-908 150-222 (413)
36 PF14709 DND1_DSRM: double str 98.3 1.1E-06 2.3E-11 79.1 6.8 65 706-770 2-79 (80)
37 KOG1817 Ribonuclease [RNA proc 97.8 4.2E-05 9.1E-10 86.5 8.4 67 707-773 429-504 (533)
38 TIGR01489 DKMTPPase-SF 2,3-dik 97.8 0.00018 3.9E-09 70.3 11.1 39 260-301 71-109 (188)
39 TIGR02253 CTE7 HAD superfamily 97.8 0.00014 3E-09 73.5 9.8 81 259-349 92-177 (221)
40 KOG2777 tRNA-specific adenosin 97.7 7E-05 1.5E-09 87.2 7.4 66 704-774 89-156 (542)
41 KOG2832 TFIIF-interacting CTD 97.7 0.0001 2.2E-09 82.3 8.2 124 249-395 201-330 (393)
42 PF13419 HAD_2: Haloacid dehal 97.6 6.4E-05 1.4E-09 70.9 5.2 81 259-349 75-160 (176)
43 PLN02770 haloacid dehalogenase 97.6 0.00024 5.2E-09 74.5 10.0 80 260-349 107-191 (248)
44 TIGR03351 PhnX-like phosphonat 97.6 0.00019 4E-09 72.8 7.6 81 260-349 86-173 (220)
45 TIGR01685 MDP-1 magnesium-depe 97.6 0.00022 4.8E-09 72.7 8.0 100 259-361 43-152 (174)
46 TIGR01449 PGP_bact 2-phosphogl 97.5 0.00053 1.2E-08 68.7 10.4 82 259-350 83-169 (213)
47 TIGR01993 Pyr-5-nucltdase pyri 97.5 0.00056 1.2E-08 67.7 9.8 78 259-349 82-168 (184)
48 TIGR01509 HAD-SF-IA-v3 haloaci 97.5 0.0007 1.5E-08 65.7 10.1 79 260-349 84-167 (183)
49 TIGR01454 AHBA_synth_RP 3-amin 97.5 0.00038 8.2E-09 70.1 8.2 81 259-349 73-158 (205)
50 PRK13288 pyrophosphatase PpaX; 97.4 0.00055 1.2E-08 69.4 8.8 81 259-349 80-165 (214)
51 PLN03243 haloacid dehalogenase 97.4 0.00032 6.9E-09 75.0 7.4 80 260-349 108-192 (260)
52 TIGR01548 HAD-SF-IA-hyp1 haloa 97.4 0.0012 2.5E-08 66.5 10.5 79 261-349 106-188 (197)
53 TIGR01488 HAD-SF-IB Haloacid D 97.4 0.0011 2.3E-08 64.6 9.8 46 260-309 72-117 (177)
54 PLN02575 haloacid dehalogenase 97.3 0.0012 2.7E-08 74.8 11.2 81 260-350 215-300 (381)
55 PRK10826 2-deoxyglucose-6-phos 97.3 0.0014 3E-08 67.0 9.9 84 260-353 91-179 (222)
56 PRK13225 phosphoglycolate phos 97.3 0.00092 2E-08 72.0 8.8 80 260-349 141-222 (273)
57 PRK13223 phosphoglycolate phos 97.2 0.00069 1.5E-08 72.5 7.5 81 259-349 99-184 (272)
58 COG5190 FCP1 TFIIF-interacting 97.2 0.00051 1.1E-08 77.9 6.6 96 256-366 247-347 (390)
59 PRK13226 phosphoglycolate phos 97.2 0.002 4.3E-08 66.7 10.5 81 259-349 93-178 (229)
60 cd01427 HAD_like Haloacid deha 97.2 0.00074 1.6E-08 60.6 6.4 41 259-302 22-62 (139)
61 TIGR01549 HAD-SF-IA-v1 haloaci 97.2 0.0013 2.7E-08 63.1 8.3 75 262-348 65-143 (154)
62 TIGR00338 serB phosphoserine p 97.2 0.0013 2.7E-08 66.8 8.7 46 260-309 84-129 (219)
63 PRK13222 phosphoglycolate phos 97.2 0.0021 4.6E-08 64.9 10.2 81 259-349 91-176 (226)
64 TIGR01491 HAD-SF-IB-PSPlk HAD- 97.2 0.0028 6.1E-08 62.7 10.9 81 260-349 79-173 (201)
65 KOG3792 Transcription factor N 97.2 0.00032 6.9E-09 83.3 4.5 175 721-908 385-571 (816)
66 TIGR01428 HAD_type_II 2-haloal 97.2 0.0011 2.3E-08 66.4 7.3 80 260-349 91-175 (198)
67 PLN02954 phosphoserine phospha 97.2 0.0013 2.8E-08 66.9 8.1 47 260-309 83-130 (224)
68 TIGR02252 DREG-2 REG-2-like, H 97.1 0.002 4.4E-08 64.5 8.9 79 260-349 104-187 (203)
69 PRK11587 putative phosphatase; 97.1 0.0014 3E-08 67.1 7.8 80 259-349 81-165 (218)
70 PLN02940 riboflavin kinase 97.1 0.00037 8.1E-09 78.3 4.1 80 260-349 92-177 (382)
71 TIGR01422 phosphonatase phosph 97.1 0.0038 8.3E-08 65.2 10.7 86 260-354 98-190 (253)
72 COG0546 Gph Predicted phosphat 97.0 0.0062 1.3E-07 63.0 11.7 87 259-355 87-179 (220)
73 KOG3769 Ribonuclease III domai 97.0 0.00049 1.1E-08 75.3 3.6 70 703-772 230-303 (333)
74 TIGR01990 bPGM beta-phosphoglu 97.0 0.0036 7.8E-08 61.3 9.0 78 260-349 86-168 (185)
75 PRK10563 6-phosphogluconate ph 96.8 0.0013 2.8E-08 66.9 4.3 82 259-353 86-173 (221)
76 PRK10725 fructose-1-P/6-phosph 96.8 0.001 2.2E-08 65.6 3.4 77 261-349 88-169 (188)
77 COG1011 Predicted hydrolase (H 96.8 0.00083 1.8E-08 67.8 2.7 79 260-349 98-181 (229)
78 PRK13478 phosphonoacetaldehyde 96.7 0.014 3E-07 61.9 11.7 81 260-349 100-186 (267)
79 TIGR01533 lipo_e_P4 5'-nucleot 96.6 0.011 2.3E-07 64.3 9.8 77 263-349 120-198 (266)
80 PRK09552 mtnX 2-hydroxy-3-keto 96.5 0.0093 2E-07 61.3 8.5 39 260-301 73-111 (219)
81 KOG4334 Uncharacterized conser 96.5 0.0021 4.6E-08 74.0 3.8 66 836-907 374-442 (650)
82 TIGR02247 HAD-1A3-hyp Epoxide 96.5 0.0053 1.2E-07 62.0 6.4 83 259-349 92-179 (211)
83 TIGR03333 salvage_mtnX 2-hydro 96.4 0.016 3.5E-07 59.5 9.6 47 260-309 69-115 (214)
84 PRK13582 thrH phosphoserine ph 96.4 0.019 4.2E-07 57.5 9.5 45 260-309 67-111 (205)
85 PHA02597 30.2 hypothetical pro 96.3 0.0047 1E-07 61.9 5.0 83 259-350 72-156 (197)
86 TIGR01672 AphA HAD superfamily 96.2 0.013 2.8E-07 62.7 7.3 72 264-349 117-194 (237)
87 KOG3769 Ribonuclease III domai 96.1 0.0059 1.3E-07 67.2 4.7 74 835-909 230-304 (333)
88 PHA03398 viral phosphatase sup 96.0 0.018 3.8E-07 63.9 7.6 105 262-401 148-255 (303)
89 COG4996 Predicted phosphatase 95.9 0.014 3.1E-07 58.2 5.7 94 259-364 39-143 (164)
90 TIGR01684 viral_ppase viral ph 95.9 0.015 3.2E-07 64.3 6.5 51 261-321 145-196 (301)
91 PRK09456 ?-D-glucose-1-phospha 95.9 0.023 4.9E-07 57.5 7.3 82 259-349 82-168 (199)
92 TIGR02137 HSK-PSP phosphoserin 95.3 0.04 8.7E-07 57.2 6.9 44 261-309 68-111 (203)
93 PLN02919 haloacid dehalogenase 95.3 0.06 1.3E-06 68.4 9.4 79 262-349 162-245 (1057)
94 PRK10748 flavin mononucleotide 95.2 0.018 3.9E-07 60.1 3.9 80 260-355 112-198 (238)
95 COG0560 SerB Phosphoserine pho 95.1 0.065 1.4E-06 56.2 7.8 86 260-348 76-169 (212)
96 PRK08238 hypothetical protein; 95.1 0.081 1.8E-06 61.9 9.1 78 261-356 72-159 (479)
97 KOG0323 TFIIF-interacting CTD 95.0 0.026 5.7E-07 67.7 5.1 59 376-449 393-451 (635)
98 TIGR01664 DNA-3'-Pase DNA 3'-p 95.0 0.084 1.8E-06 53.2 7.8 82 259-349 40-137 (166)
99 KOG1817 Ribonuclease [RNA proc 94.8 0.086 1.9E-06 60.8 8.1 70 837-907 427-502 (533)
100 TIGR01686 FkbH FkbH-like domai 94.7 0.053 1.2E-06 59.5 6.0 81 263-349 33-113 (320)
101 PRK11133 serB phosphoserine ph 94.6 0.12 2.5E-06 57.7 8.4 41 260-303 180-220 (322)
102 PF06888 Put_Phosphatase: Puta 94.6 0.18 4E-06 54.1 9.6 51 261-319 71-121 (234)
103 PRK11009 aphA acid phosphatase 94.6 0.12 2.6E-06 55.4 8.2 39 259-300 112-154 (237)
104 KOG3109 Haloacid dehalogenase- 94.5 0.045 9.8E-07 58.5 4.7 82 259-350 96-189 (244)
105 TIGR01490 HAD-SF-IB-hyp1 HAD-s 94.3 0.017 3.8E-07 57.7 1.2 46 260-309 86-131 (202)
106 COG0637 Predicted phosphatase/ 94.2 0.042 9.2E-07 57.3 3.8 76 260-349 85-169 (221)
107 TIGR01681 HAD-SF-IIIC HAD-supe 94.2 0.04 8.6E-07 52.9 3.3 86 261-349 29-118 (128)
108 TIGR02254 YjjG/YfnB HAD superf 94.1 0.071 1.5E-06 53.8 5.0 80 259-349 95-180 (224)
109 PRK11590 hypothetical protein; 94.0 0.096 2.1E-06 53.9 5.9 40 260-302 94-134 (211)
110 PRK14988 GMP/IMP nucleotidase; 93.7 0.085 1.8E-06 55.0 4.8 80 260-349 92-176 (224)
111 KOG0921 Dosage compensation co 93.5 0.32 6.9E-06 60.5 9.6 200 707-910 3-242 (1282)
112 PF03368 Dicer_dimer: Dicer di 93.5 0.081 1.7E-06 48.7 3.7 62 840-909 2-74 (90)
113 PRK09449 dUMP phosphatase; Pro 91.9 0.24 5.2E-06 50.5 5.2 84 260-354 94-185 (224)
114 PF05152 DUF705: Protein of un 91.0 0.52 1.1E-05 52.3 6.8 102 264-401 145-249 (297)
115 PF14954 LIX1: Limb expression 90.5 0.46 9.9E-06 50.8 5.6 65 835-905 19-94 (252)
116 TIGR02009 PGMB-YQAB-SF beta-ph 90.0 0.35 7.6E-06 47.4 4.1 78 260-349 87-169 (185)
117 PRK06698 bifunctional 5'-methy 90.0 0.6 1.3E-05 53.9 6.5 79 259-349 328-410 (459)
118 TIGR01691 enolase-ppase 2,3-di 89.1 0.58 1.3E-05 49.6 5.1 85 259-349 93-179 (220)
119 TIGR01675 plant-AP plant acid 88.4 2.6 5.7E-05 45.4 9.5 95 264-369 123-227 (229)
120 TIGR01261 hisB_Nterm histidino 86.6 1.2 2.6E-05 44.9 5.4 80 259-349 27-130 (161)
121 PLN02779 haloacid dehalogenase 86.1 0.97 2.1E-05 49.2 4.8 87 260-354 143-234 (286)
122 KOG3120 Predicted haloacid deh 85.9 0.77 1.7E-05 49.6 3.8 35 264-300 87-121 (256)
123 PF03368 Dicer_dimer: Dicer di 85.6 3.7 8.1E-05 37.9 7.7 62 708-773 2-74 (90)
124 TIGR01670 YrbI-phosphatas 3-de 85.6 2.4 5.1E-05 42.0 6.8 73 261-349 30-102 (154)
125 TIGR00099 Cof-subfamily Cof su 84.1 2.3 4.9E-05 44.7 6.3 30 145-175 2-31 (256)
126 TIGR01493 HAD-SF-IA-v2 Haloaci 82.5 0.49 1.1E-05 46.3 0.6 73 260-349 89-166 (175)
127 PLN02811 hydrolase 80.1 2.5 5.3E-05 43.7 4.8 79 260-349 77-167 (220)
128 TIGR01656 Histidinol-ppas hist 80.0 3.3 7.1E-05 40.4 5.3 39 261-302 27-80 (147)
129 TIGR01680 Veg_Stor_Prot vegeta 79.6 8.6 0.00019 42.8 8.9 74 264-349 148-232 (275)
130 PHA02530 pseT polynucleotide k 79.5 2 4.3E-05 46.2 3.9 81 259-351 185-281 (300)
131 TIGR01482 SPP-subfamily Sucros 77.8 2 4.3E-05 43.7 3.2 28 145-174 1-29 (225)
132 PF08282 Hydrolase_3: haloacid 77.5 1.8 3.9E-05 43.4 2.8 29 145-174 1-29 (254)
133 smart00559 Ku78 Ku70 and Ku80 77.0 11 0.00024 37.2 8.0 86 35-127 33-124 (140)
134 PF03767 Acid_phosphat_B: HAD 74.4 2.4 5.3E-05 45.1 2.9 80 264-354 118-207 (229)
135 KOG1615 Phosphoserine phosphat 73.7 23 0.0005 38.2 9.7 42 261-305 88-129 (227)
136 TIGR01485 SPP_plant-cyano sucr 73.0 1.8 3.8E-05 45.6 1.4 14 142-155 1-14 (249)
137 PF06941 NT5C: 5' nucleotidase 71.8 15 0.00033 37.4 7.8 16 141-156 1-16 (191)
138 TIGR01668 YqeG_hyp_ppase HAD s 69.1 6.5 0.00014 39.6 4.4 82 261-356 43-127 (170)
139 TIGR02461 osmo_MPG_phos mannos 66.2 4.6 0.0001 42.5 2.8 29 145-175 2-30 (225)
140 PTZ00174 phosphomannomutase; P 66.0 9.1 0.0002 40.6 5.0 31 142-174 5-36 (247)
141 PRK01158 phosphoglycolate phos 65.7 5.1 0.00011 41.0 3.0 29 144-174 5-34 (230)
142 TIGR01459 HAD-SF-IIA-hyp4 HAD- 65.4 8.3 0.00018 40.6 4.5 80 260-348 23-104 (242)
143 PRK03669 mannosyl-3-phosphogly 65.0 5.1 0.00011 42.8 2.9 32 142-174 7-38 (271)
144 KOG3792 Transcription factor N 64.4 5.1 0.00011 49.2 3.0 62 704-770 505-569 (816)
145 TIGR01544 HAD-SF-IE haloacid d 64.3 9.5 0.00021 42.4 4.8 38 260-300 120-157 (277)
146 TIGR01663 PNK-3'Pase polynucle 64.1 12 0.00025 45.1 5.8 38 262-302 198-247 (526)
147 TIGR02244 HAD-IG-Ncltidse HAD 62.5 9.6 0.00021 43.5 4.6 60 258-320 181-241 (343)
148 PF11019 DUF2608: Protein of u 62.3 38 0.00082 36.9 8.9 25 326-350 165-189 (252)
149 PRK10513 sugar phosphate phosp 62.3 6.4 0.00014 41.5 3.0 29 144-174 5-34 (270)
150 PRK08942 D,D-heptose 1,7-bisph 62.2 20 0.00044 36.0 6.4 29 260-291 28-56 (181)
151 TIGR01689 EcbF-BcbF capsule bi 61.5 7.5 0.00016 38.4 3.1 13 144-156 3-15 (126)
152 TIGR00213 GmhB_yaeD D,D-heptos 60.9 23 0.00049 35.6 6.4 29 260-291 25-53 (176)
153 PRK10530 pyridoxal phosphate ( 60.9 7.9 0.00017 40.6 3.3 30 144-174 5-34 (272)
154 PRK12702 mannosyl-3-phosphogly 60.8 9.1 0.0002 43.1 3.9 66 144-216 3-70 (302)
155 TIGR01493 HAD-SF-IA-v2 Haloaci 60.7 3.8 8.2E-05 40.2 0.9 14 144-157 1-14 (175)
156 PF00702 Hydrolase: haloacid d 60.0 17 0.00037 36.2 5.4 80 258-349 124-205 (215)
157 COG0561 Cof Predicted hydrolas 59.9 11 0.00024 39.7 4.3 29 142-171 3-31 (264)
158 PRK10976 putative hydrolase; P 58.8 8.3 0.00018 40.7 3.1 30 144-174 4-33 (266)
159 PRK09449 dUMP phosphatase; Pro 58.6 5.5 0.00012 40.7 1.7 12 144-155 5-16 (224)
160 TIGR01681 HAD-SF-IIIC HAD-supe 58.6 8.8 0.00019 36.9 3.0 14 144-157 2-15 (128)
161 KOG2334 tRNA-dihydrouridine sy 58.4 3.1 6.8E-05 48.5 -0.1 66 705-772 375-442 (477)
162 PRK15126 thiamin pyrimidine py 58.3 8.4 0.00018 40.9 3.0 30 144-174 4-33 (272)
163 TIGR01662 HAD-SF-IIIA HAD-supe 58.1 16 0.00034 34.6 4.5 83 260-355 24-121 (132)
164 PRK05446 imidazole glycerol-ph 57.8 16 0.00034 41.9 5.2 80 259-349 28-131 (354)
165 PRK06769 hypothetical protein; 57.0 21 0.00045 36.1 5.4 28 261-291 28-55 (173)
166 PF14954 LIX1: Limb expression 57.0 21 0.00046 38.8 5.6 62 706-769 22-94 (252)
167 KOG1033 eIF-2alpha kinase PEK/ 54.9 7.6 0.00016 46.4 2.2 123 731-903 11-136 (516)
168 TIGR01487 SPP-like sucrose-pho 53.7 11 0.00024 38.6 3.0 28 144-173 3-31 (215)
169 TIGR02463 MPGP_rel mannosyl-3- 53.4 11 0.00023 38.7 2.8 28 145-173 2-29 (221)
170 TIGR02009 PGMB-YQAB-SF beta-ph 53.2 6.6 0.00014 38.6 1.2 14 144-157 3-16 (185)
171 PLN02423 phosphomannomutase 52.2 16 0.00035 39.0 4.0 30 142-173 7-37 (245)
172 TIGR02254 YjjG/YfnB HAD superf 52.1 6.8 0.00015 39.6 1.1 16 144-159 3-18 (224)
173 cd00594 KU Ku-core domain; inc 51.1 58 0.0013 35.0 8.0 87 35-128 86-176 (272)
174 PRK14988 GMP/IMP nucleotidase; 49.4 8 0.00017 40.5 1.2 12 144-155 12-23 (224)
175 PF02169 LPP20: LPP20 lipoprot 49.3 19 0.00041 32.2 3.4 29 879-907 11-39 (92)
176 TIGR01662 HAD-SF-IIIA HAD-supe 49.2 16 0.00035 34.4 3.1 12 144-155 2-13 (132)
177 PF02169 LPP20: LPP20 lipoprot 46.2 27 0.00059 31.2 3.9 29 744-772 12-40 (92)
178 TIGR01456 CECR5 HAD-superfamil 46.0 17 0.00036 40.4 3.0 28 143-172 1-28 (321)
179 PLN02151 trehalose-phosphatase 44.7 23 0.00049 40.8 3.9 26 129-154 85-110 (354)
180 TIGR01486 HAD-SF-IIB-MPGP mann 43.8 17 0.00037 38.4 2.6 28 145-173 2-29 (256)
181 PRK10187 trehalose-6-phosphate 43.3 20 0.00043 38.8 3.1 15 142-156 14-28 (266)
182 PLN03017 trehalose-phosphatase 43.1 16 0.00034 42.2 2.3 26 129-154 98-123 (366)
183 PLN02779 haloacid dehalogenase 43.0 13 0.00027 40.7 1.5 14 144-157 42-55 (286)
184 TIGR01484 HAD-SF-IIB HAD-super 42.4 20 0.00044 36.1 2.8 13 145-157 2-14 (204)
185 TIGR01656 Histidinol-ppas hist 40.4 27 0.00059 34.1 3.2 15 144-158 2-16 (147)
186 PRK00192 mannosyl-3-phosphogly 39.4 23 0.00051 37.9 2.8 30 143-173 5-34 (273)
187 PF02735 Ku: Ku70/Ku80 beta-ba 39.3 1.1E+02 0.0023 31.7 7.5 87 35-127 80-172 (200)
188 COG2179 Predicted hydrolase of 39.0 20 0.00043 37.7 2.1 22 136-157 22-43 (175)
189 COG2503 Predicted secreted aci 38.9 13 0.00028 41.1 0.8 18 139-156 76-93 (274)
190 TIGR00578 ku70 ATP-dependent D 38.4 1E+02 0.0022 37.7 8.2 87 35-128 316-415 (584)
191 PLN02887 hydrolase family prot 38.4 27 0.0006 42.5 3.5 39 136-175 302-340 (580)
192 KOG0921 Dosage compensation co 38.1 12 0.00025 47.6 0.3 74 697-770 159-238 (1282)
193 TIGR02471 sucr_syn_bact_C sucr 37.6 21 0.00045 37.3 2.0 23 145-169 2-24 (236)
194 TIGR01545 YfhB_g-proteo haloac 36.7 15 0.00033 38.4 0.9 38 260-300 93-131 (210)
195 PF12710 HAD: haloacid dehalog 36.6 17 0.00037 35.7 1.2 10 145-154 1-10 (192)
196 TIGR01457 HAD-SF-IIA-hyp2 HAD- 35.5 27 0.00058 37.4 2.5 29 144-174 3-31 (249)
197 smart00775 LNS2 LNS2 domain. T 35.3 31 0.00066 34.8 2.7 17 144-160 1-17 (157)
198 cd00789 KU_like Ku-core domain 34.6 1.3E+02 0.0029 33.1 7.6 78 35-127 84-163 (256)
199 PF14657 Integrase_AP2: AP2-li 34.2 95 0.0021 25.3 4.9 21 745-765 17-37 (46)
200 PRK06698 bifunctional 5'-methy 32.9 19 0.00041 41.8 1.0 14 144-157 243-256 (459)
201 TIGR01458 HAD-SF-IIA-hyp3 HAD- 32.5 33 0.00071 36.9 2.6 34 264-300 123-156 (257)
202 KOG1924 RhoA GTPase effector D 32.3 1.3E+02 0.0028 38.3 7.6 14 394-407 421-434 (1102)
203 TIGR00685 T6PP trehalose-phosp 32.0 49 0.0011 35.1 3.7 15 141-155 2-16 (244)
204 PF05116 S6PP: Sucrose-6F-phos 31.7 23 0.0005 38.0 1.3 13 142-154 2-14 (247)
205 PF12689 Acid_PPase: Acid Phos 31.0 24 0.00052 36.5 1.2 44 258-304 42-86 (169)
206 PF08645 PNK3P: Polynucleotide 30.7 28 0.00061 35.2 1.6 16 145-160 3-18 (159)
207 cd01773 Faf1_like1_UBX Faf1 ik 30.3 1.9E+02 0.0042 27.0 6.8 76 231-348 4-81 (82)
208 cd00873 KU80 Ku-core domain, K 29.5 1.8E+02 0.0038 32.4 7.6 84 37-127 96-183 (300)
209 PF02839 CBM_5_12: Carbohydrat 29.3 29 0.00063 27.3 1.2 21 201-221 9-29 (41)
210 PRK10444 UMP phosphatase; Prov 29.1 40 0.00086 36.4 2.5 28 144-173 3-30 (248)
211 PF12689 Acid_PPase: Acid Phos 28.8 70 0.0015 33.2 4.1 12 144-155 5-16 (169)
212 PF09921 DUF2153: Uncharacteri 28.0 87 0.0019 31.5 4.4 40 162-206 42-85 (126)
213 cd00788 KU70 Ku-core domain, K 27.7 2.1E+02 0.0046 31.6 7.8 86 35-127 92-190 (287)
214 TIGR01452 PGP_euk phosphoglyco 27.0 43 0.00094 36.2 2.4 28 144-173 4-31 (279)
215 PLN02382 probable sucrose-phos 26.8 41 0.00088 39.1 2.3 18 139-156 6-23 (413)
216 PF09003 Phage_integ_N: Bacter 26.5 62 0.0013 29.9 2.9 31 872-904 29-59 (75)
217 PF00333 Ribosomal_S5: Ribosom 26.4 54 0.0012 29.4 2.4 39 732-770 20-62 (67)
218 PRK14502 bifunctional mannosyl 25.6 57 0.0012 40.8 3.2 33 141-174 415-447 (694)
219 TIGR01525 ATPase-IB_hvy heavy 24.6 78 0.0017 37.9 4.1 43 258-303 381-424 (556)
220 TIGR02772 Ku_bact Ku protein, 24.4 2.7E+02 0.0059 30.8 7.8 70 35-113 85-155 (258)
221 PF04098 Rad52_Rad22: Rad52/22 23.9 1.4E+02 0.003 30.2 5.2 48 675-728 12-59 (154)
222 TIGR01545 YfhB_g-proteo haloac 23.8 88 0.0019 32.9 3.9 18 144-161 7-24 (210)
223 KOG3085 Predicted hydrolase (H 23.0 1.6E+02 0.0035 32.3 5.8 77 259-350 112-196 (237)
224 PF00702 Hydrolase: haloacid d 22.0 49 0.0011 32.9 1.5 14 144-157 3-16 (215)
225 PRK09484 3-deoxy-D-manno-octul 21.9 46 0.00099 34.0 1.3 11 144-154 23-33 (183)
226 KOG1009 Chromatin assembly com 21.5 1.7E+02 0.0037 34.6 5.7 71 190-268 222-303 (434)
227 TIGR01021 rpsE_bact ribosomal 21.3 1.1E+02 0.0023 31.7 3.7 41 732-772 20-64 (154)
228 cd00036 ChtBD3 Chitin/cellulos 20.7 57 0.0012 25.6 1.3 19 201-219 7-25 (41)
229 PF09419 PGP_phosphatase: Mito 20.6 81 0.0018 32.8 2.8 20 139-158 38-57 (168)
230 TIGR01511 ATPase-IB1_Cu copper 20.4 92 0.002 37.6 3.6 42 259-303 403-444 (562)
No 1
>KOG0323 consensus TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=100.00 E-value=6.2e-61 Score=548.95 Aligned_cols=537 Identities=27% Similarity=0.347 Sum_probs=433.7
Q ss_pred cccceEEEeecCCcCCCCcchhhhhcccCceeEeeccCCCc--cHHHHHHHHHhhhcccceEeecCCCceeEEEEeeecC
Q 002537 36 VFDEIRISYFSEASERCPPLAVLHTITASGICFKMESKSSD--NIQLHLLHSSCIRENKTAVMPLGLTEELHLVAMYSRN 113 (911)
Q Consensus 36 ~~~~~~i~~~~~~~e~~~pl~~lh~ia~~~~~~~~~~~~~~--~~~l~~lh~~c~~e~ktav~~~~~~~elhlva~~s~~ 113 (911)
+..++++.+||...|+|++++++.+++.++++++.+++-.. +..+...|+.|..+.++|||..+ .++.|+|||.+..
T Consensus 5 ~~~~~~~~~~~~~~e~~~~~a~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~e~~~v~~~-~~~~~~v~~~~~~ 83 (635)
T KOG0323|consen 5 PGPEERREAFSIVIERSPDLAELTALASGASDGVLESSDDSLVEKDLESFVAICRSKVEGAVVLLG-RDLEKKVALISGV 83 (635)
T ss_pred CCCcchhhhhhhhhccCcchhhhhhhhhhccccccccccccchhhcccchhheecccccchhhccc-cchhhhhcccccc
Confidence 44459999999999999999999999999999999988554 77789999999999999999999 8899999999998
Q ss_pred CCCCccEEEEEeeccchhhHHHHHhhccceeEEEeCCcceeecccccchHHHHHHHHhhhccCCCchhhhhhHHHHHHhh
Q 002537 114 NEKQYPCFWAFSVGSGLYNSCLTMLNLRCLGIVFDLDETLIVANTMRSFEDRIEALLRKISTEVDPQRIAGMQAEVKRYQ 193 (911)
Q Consensus 114 ~~~~~p~F~~~~v~~~~y~~~~~ll~~r~L~lV~DLDeTLi~A~t~~~~e~ri~~l~~~~~~~~dP~~~~~~~~e~kr~q 193 (911)
-.. ++|||+|.|..|+|+.|+.+|+.+|...++||++|++.+++|.+|.++|.+...||.+.. +++++
T Consensus 84 ~~~-~~~C~H~~v~~GlC~~Cg~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-----------L~lv~ 151 (635)
T KOG0323|consen 84 SSS-TSCCEHFTVFGGLCASCGKDLESLQGRSFDYLVKGLQLSNEMVAFTKTLTTQFSSLNRKK-----------LHLVL 151 (635)
T ss_pred ccc-cCCccceeecccHHHHHHHHHHHhhccchhcccchhhhhhhhhhhhhHHHHHHHHHhhhc-----------ceeeh
Confidence 644 799999999999999999999999999999999999999999999999999999997664 78889
Q ss_pred hhHHHHHHhhhcCccccCCeEEEeecccccCCCCcccccccceeeccccceeeeecCCCCCCceEEEeeCcChhhHHHHH
Q 002537 194 DDKNILKQYAENDQVNENGKVIKVQSEVVPALSDSHQALVRPLIRLQEKNIILTRINPQIRDTSVLVRLRPAWEDLRSYL 273 (911)
Q Consensus 194 ~D~~lL~q~~~~d~v~~~G~~~~~q~E~~~~~~d~~~~~~rpvirl~~~n~~ltrI~P~~r~~~~~vKLRPgv~eLr~FL 273 (911)
++...|.+|+..+.+..+++-.+.+.+.+ ..|..+++|+|..+.++|||||||||++ ||
T Consensus 152 Dld~tllh~~~~~~l~e~~~~l~~~~~~~------------------~sn~dl~~~~~~~~~~~~~vKlRP~~~e---fL 210 (635)
T KOG0323|consen 152 DLDHTLLHTILKSDLSETEKYLKEEAESV------------------ESNKDLFRFNPLGHDTEYLVKLRPFVHE---FL 210 (635)
T ss_pred hhhhHHHHhhccchhhhhhhhcccccccc------------------cccccceeecccCCCceEEEEeCccHHH---HH
Confidence 99999999999999998888887777664 3477899999999999999999999999 99
Q ss_pred hhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccCCCceEeccCC---CccchhhhccCCCCCCcEEEEEcCCcc
Q 002537 274 TARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSG---SRKSLFNVFQDGTCHPKMALVIDDRLK 350 (911)
Q Consensus 274 ~a~~sk~FElyVyTmG~R~YA~~I~rlLDP~g~lFg~~~l~~RIisresg---~~KsL~~lfp~~~~~~~mvVIIDDR~d 350 (911)
+ +++++|||||||||+|+||++||+||||+|.||+ +|||||+++ ..++|..+|| |+++||||||||.+
T Consensus 211 ~-~~sklfemhVyTmg~R~YA~~i~~liDP~~~lF~-----dRIisrde~~~~kt~dL~~~~p---~g~smvvIIDDr~d 281 (635)
T KOG0323|consen 211 K-EANKLFEMHVYTMGTRDYALEIAKLIDPEGKYFG-----DRIISRDESPFFKTLDLVLLFP---CGDSMVVIIDDRSD 281 (635)
T ss_pred H-HHHhhceeEEEeccchHHHHHHHHHhCCCCcccc-----ceEEEecCCCcccccccccCCC---CCCccEEEEeCccc
Confidence 9 9999999999999999999999999999999999 999999765 3466666777 99999999999999
Q ss_pred cCCCCCCCCeEEeccccCccCchhhhcccCchHHHHHHHHhhhcccchhchhhhhhhccccccccCcCCCCCCCCCcccc
Q 002537 351 VWDDKDQPRVHVVPAFAPYYAPQAEANNAIPVLCVARNIACNVRGGFFKEFDEGLLQRIPEISYEDDVKDIPSPPDVSNY 430 (911)
Q Consensus 351 VW~~~~~~~v~vV~~Y~pf~~~q~e~~~~~p~L~~a~~vl~~Vh~~FF~~~D~~l~~ri~ev~~e~~~~~~~~~pDV~n~ 430 (911)
||+++++ |+++|.+|.||.....-.+. +.++.+++++|.++++||+++|+.+..+|.++-|+++-.+.+..+++
T Consensus 282 VW~~~~~-nLI~i~~y~yF~~~gd~nap--~~~~~~~~~~~~~~~~~~k~~~~s~~~~~~~~~~~~~~~~~~~~~~~--- 355 (635)
T KOG0323|consen 282 VWPDHKR-NLIQIAPYPYFSGQGDINAP--PPLHVLRNVACSVRGAFFKEFDPSLKSRISEVRYEDDDESNPTSYSV--- 355 (635)
T ss_pred cccCCCc-ceEEeeeeecccCcccccCC--cccccccchhcccccccccccCcccccccccccccccccccCccccc---
Confidence 9999965 67789999877654332222 78999999999999999999999999999999999999999999999
Q ss_pred eeccccccccCCCCCcccCCCcchHHHHHHHHHhhhhcccccccccccCCCCCCCcccccCCCCCCccCCCCcccccccc
Q 002537 431 LVSEDDAATANGIKDPLSFDGMADAEVERRLKEAIAASATISSAVANLDPRLAPFQYTMPSSSSTTTLPTSQAAVMPLAN 510 (911)
Q Consensus 431 ~~~e~~~~~~~g~~~~~~~~gm~~~everrl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~p~~~~~~~~n 510 (911)
-++||.+++.+|||.+. +| +.
T Consensus 356 --------~~~~~~~p~~~~~~~~~-------------------------------------~~-~~------------- 376 (635)
T KOG0323|consen 356 --------ELSANPGPLKQDGMDEF-------------------------------------VP-EE------------- 376 (635)
T ss_pred --------ccccccCcccccccccc-------------------------------------cc-cc-------------
Confidence 48899998899999876 00 00
Q ss_pred cCCCCCccccccccccCCCCCCcCCCcccccCCCCCCCCChhhhhhhhhhccCCCcCCCCCCCCCCCCCCCccccCCccC
Q 002537 511 MQFPPATSLVKPLGHVGPPEQSLQSSPAREEGEVPESELDPDTRRRLLILQHGMDTRENAPSEAPFPARTQMQVSVPRVP 590 (911)
Q Consensus 511 ~~~p~~~~~~~~~~~~~~~~psl~~sP~reegevpe~eld~dtrrrllilqhgqD~r~~~~~~pp~~~r~p~q~s~~~v~ 590 (911)
T Consensus 377 -------------------------------------------------------------------------------- 376 (635)
T KOG0323|consen 377 -------------------------------------------------------------------------------- 376 (635)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCccccccccCccccCCCCCCCCCCCccccc-cccCCCCCCCCCCCCCCCCCCCC-ccccccCCchhccchhhhhccc
Q 002537 591 SRGSWFPVEEEMSPRQLNRAVPKEFPLNSEAMQ-IEKHRPPHPSFFPKIENPSTSDR-PHENQRMPKEALRRDDRLRLNH 668 (911)
Q Consensus 591 ~~g~w~~veeem~~~~~nr~~~~~~p~~~~~~~-~~k~~~~~ps~~~~~~~~~~sdr-~~~~q~~p~~~~~~~~~~~~n~ 668 (911)
+.+++.+.+..+..+.+.+.++...+ ..+..+-|+.||.+.+ ...+. .+.+-|.......+.....-|-
T Consensus 377 -------~~~~~~~~s~~~~~~de~~~D~~L~~~~kvl~~vH~~ff~~~~--~~~e~~~~~Dvr~~i~~~~~~v~~~~~~ 447 (635)
T KOG0323|consen 377 -------NAPEARSGSYREKKSDESDEDGELANLLKVLKPVHKGFFAKYD--EVEETLESPDVRLLIPELRTKVLKGSQI 447 (635)
T ss_pred -------cchhhcccccccccccccccchhHHHHhhhhcccchhhhhccc--cccccccCCChhhhhhhhhhHHhhccce
Confidence 01111111111111222222333334 3445778999999866 33333 5555555555555555555566
Q ss_pred CCCCCCCCCCCCcCcccCCCCCCCccccCCccCCCCCCchHHHHHHHHhcCCCeEEEEeeecCCCceEEEEEEECCEEEE
Q 002537 669 TLSDYQSFSGEEIPLSRSSSSSRDVDFESGRDVSSTETPSGVLQDIAMKCGTKVEFRPALVASTELQFSIEAWFAGEKIG 748 (911)
Q Consensus 669 ~~~~~~~f~~~~~~~~~~ss~~~~~~~~~~~~~~~~~n~KT~LQE~~Qk~~~~~~Y~~v~~~~Hd~~FtveV~I~Ge~~G 748 (911)
..|+-+|+.....+ +......-+-+....+.+..-.++.++.+++....|+......-.-.|...+|--.+++|
T Consensus 448 vfSg~~P~~~~~~~------s~~~~~~~~~g~vs~~~~~~~~th~i~~~~gt~k~~~a~~~~~~~Vv~~~wl~~~~e~w~ 521 (635)
T KOG0323|consen 448 VFSGLHPTGSTDES------ADILGVAQQLGAVSAPDVSDKTTHLIAANAGTKKVYKAVVSGSAKVVNAAWLWRSLEKWG 521 (635)
T ss_pred eecccccCcCCcch------hhhhhhhhcccceecccccchhhhHHhhccCcceeeccccccceeEechhHHHHHHHHhc
Confidence 66777776654333 122222223335567788899999999999998888865544445578888888899999
Q ss_pred EeecCCHHHHHHHHHHHHHHHHHhhhc
Q 002537 749 EGIGRTRREAQRQAAEGSIKHLANVYM 775 (911)
Q Consensus 749 ~G~GkSKKEAEq~AAk~AL~~L~~~~~ 775 (911)
.|.++.++.+-..+|....+.+...+.
T Consensus 522 ~v~ek~~~l~~~~~~~~~~~~~a~~~~ 548 (635)
T KOG0323|consen 522 KVEEKLEPLDDDQRAAIRRESLARLYE 548 (635)
T ss_pred chhcccccccccccchhcccchhhhhh
Confidence 999999999999998888777765444
No 2
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=99.94 E-value=8.6e-28 Score=236.34 Aligned_cols=102 Identities=29% Similarity=0.551 Sum_probs=93.5
Q ss_pred CceEEEeeCcChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccCCCceEeccCC---Cccchhhh
Q 002537 255 DTSVLVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSG---SRKSLFNV 331 (911)
Q Consensus 255 ~~~~~vKLRPgv~eLr~FL~a~~sk~FElyVyTmG~R~YA~~I~rlLDP~g~lFg~~~l~~RIisresg---~~KsL~~l 331 (911)
++.+++|+|||+.+ ||+ +++++||++|||+|.+.||.+|++.|||++.+|+ +||++++++ ..|+|+++
T Consensus 52 ~~~~~v~~rPgv~e---fL~-~l~~~yel~I~T~~~~~yA~~vl~~ldp~~~~F~-----~ri~~rd~~~~~~~KdL~~i 122 (156)
T TIGR02250 52 TMWYLTKLRPFLHE---FLK-EASKLYEMHVYTMGTRAYAQAIAKLIDPDGKYFG-----DRIISRDESGSPHTKSLLRL 122 (156)
T ss_pred CeEEEEEECCCHHH---HHH-HHHhhcEEEEEeCCcHHHHHHHHHHhCcCCCeec-----cEEEEeccCCCCccccHHHH
Confidence 56799999999999 998 8889999999999999999999999999999998 899999763 67999999
Q ss_pred ccCCCCCCcEEEEEcCCcccCCCCCCCCeEEeccccCc
Q 002537 332 FQDGTCHPKMALVIDDRLKVWDDKDQPRVHVVPAFAPY 369 (911)
Q Consensus 332 fp~~~~~~~mvVIIDDR~dVW~~~~~~~v~vV~~Y~pf 369 (911)
++ ++.+++|||||+++||..+ +.|++.|++|.||
T Consensus 123 ~~---~d~~~vvivDd~~~~~~~~-~~N~i~i~~~~~f 156 (156)
T TIGR02250 123 FP---ADESMVVIIDDREDVWPWH-KRNLIQIEPYNYF 156 (156)
T ss_pred cC---CCcccEEEEeCCHHHhhcC-ccCEEEeCCcccC
Confidence 97 7899999999999999997 4567789999987
No 3
>KOG3732 consensus Staufen and related double-stranded-RNA-binding proteins [Intracellular trafficking, secretion, and vesicular transport; Transcription]
Probab=99.90 E-value=5.4e-23 Score=221.56 Aligned_cols=172 Identities=17% Similarity=0.233 Sum_probs=134.6
Q ss_pred CCchHHHHHHHHhcCCCeEEEEeee--cCCCceEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHHHhhhcccccCCC
Q 002537 705 ETPSGVLQDIAMKCGTKVEFRPALV--ASTELQFSIEAWFAGEKIGEGIGRTRREAQRQAAEGSIKHLANVYMLRVKSDS 782 (911)
Q Consensus 705 ~n~KT~LQE~~Qk~~~~~~Y~~v~~--~~Hd~~FtveV~I~Ge~~G~G~GkSKKEAEq~AAk~AL~~L~~~~~~~~~p~~ 782 (911)
+++++.||||+.+.+.++.|+++.+ +.|++.|+++|.|+ +..++|.|+|||.||+.||+.+|..|+.-- |.+
T Consensus 38 KS~IS~l~E~~~r~~~~v~fevl~eeGp~H~~~fv~rvtvg-~~~a~GeG~sKK~AKh~AA~~~L~~lk~l~-----~l~ 111 (339)
T KOG3732|consen 38 KSPISLLQEYGLRRGLTPVYEVLREEGPPHMPNFVFRVTVG-EITATGEGKSKKLAKHRAAEALLKELKKLP-----PLA 111 (339)
T ss_pred CChHHHHHHHHHHhCCCcceeeeeccCCccCCCeEEEEEEe-eeEEecCCCchhHHHHHHHHHHHHHHhcCC-----Ccc
Confidence 7899999999999999999999986 68999999999987 788899999999999999999999997732 222
Q ss_pred CCCCCCCCCcCCccCcccccccccCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCChHHHHHHHHHhcCCceeEeecCCC
Q 002537 783 GSGHGDGSRFSNANENCFMGEINSFGGQPLAKDESLSSEPSKLVDPRLEGSKKLMGSVSALKELCMTEGLGVVFQQQPPS 862 (911)
Q Consensus 783 ~~~~~D~s~~~~~~eN~~~~d~ns~~~~~~~~~~~stSe~s~~~~~~~~~s~~~~NyIglLNELCqkegl~v~f~~~~~~ 862 (911)
+. ..|..+.... ++.+. +.+ ...++. -....|||+.|+||||.++|.++.++. ..
T Consensus 112 ~v-~k~~~~~~~~---------~~~~~----~~~-q~~d~~---------~~~~~NPI~~L~e~~q~k~~k~P~yel-v~ 166 (339)
T KOG3732|consen 112 NV-RKDSLKFAKM---------KSSGV----KKD-QPGDPE---------YGQVLNPIGRLQELAQAKKWKLPEYEL-VQ 166 (339)
T ss_pred cc-ccCccccccc---------ccCCc----ccc-CCCCcc---------cccccChHHHHHHHHHHhCCCCCceEE-Ee
Confidence 21 1222211000 00000 000 000000 113679999999999999999999987 46
Q ss_pred CCCCCCCCcEEEEEEECCEEEceeecCCHHHHHHHHHHHHHHHHHh
Q 002537 863 SANSVQKDEVYAQVEIDGQVLGKGIGSTWDEAKMQVFLLDIQNFLA 908 (911)
Q Consensus 863 ~sgg~h~~eF~~qVeIgGk~yg~G~GsTKKEAKqqAAklAl~kl~~ 908 (911)
+.|.+|++||+++|++++.+- .|+|.|||.||++||+.+|+.|-.
T Consensus 167 E~G~~~~rEFv~q~sv~~~~~-~GkG~sKKiAKRnAAeamLe~l~~ 211 (339)
T KOG3732|consen 167 ESGVPHRREFVIQCSVENFTE-EGKGPSKKIAKRNAAEAMLESLGF 211 (339)
T ss_pred ccCCCccceEEEEEEecceee-ecCCchHHHHHHHHHHHHHHHhcc
Confidence 689999999999999999976 999999999999999999999864
No 4
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=99.77 E-value=2.2e-18 Score=170.01 Aligned_cols=117 Identities=20% Similarity=0.175 Sum_probs=92.2
Q ss_pred ceEEEeeCcChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccCCCceEeccCC------Cccchh
Q 002537 256 TSVLVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSG------SRKSLF 329 (911)
Q Consensus 256 ~~~~vKLRPgv~eLr~FL~a~~sk~FElyVyTmG~R~YA~~I~rlLDP~g~lFg~~~l~~RIisresg------~~KsL~ 329 (911)
..|||++|||+.| ||+ +++++||++|||+|++.||..|++.|||.+.+|. ++++|+++ ..|+|.
T Consensus 37 ~~~~v~~RPgl~e---FL~-~l~~~yei~I~Ts~~~~yA~~il~~ldp~~~~f~------~~l~r~~~~~~~~~~~K~L~ 106 (162)
T TIGR02251 37 IPVYVFKRPHVDE---FLE-RVSKWYELVIFTASLEEYADPVLDILDRGGKVIS------RRLYRESCVFTNGKYVKDLS 106 (162)
T ss_pred EEEEEEECCCHHH---HHH-HHHhcCEEEEEcCCcHHHHHHHHHHHCcCCCEEe------EEEEccccEEeCCCEEeEch
Confidence 4799999999999 888 7888999999999999999999999999998898 34455443 358888
Q ss_pred hhccCCCCCCcEEEEEcCCcccCCCCCCCCeEEeccccCccCchhhhcccCchHHHHHHHHhhhcc
Q 002537 330 NVFQDGTCHPKMALVIDDRLKVWDDKDQPRVHVVPAFAPYYAPQAEANNAIPVLCVARNIACNVRG 395 (911)
Q Consensus 330 ~lfp~~~~~~~mvVIIDDR~dVW~~~~~~~v~vV~~Y~pf~~~q~e~~~~~p~L~~a~~vl~~Vh~ 395 (911)
.+- .+.+.+|||||+...|.... .|.+.|.+|.. ...+-.|..++.+|..++.
T Consensus 107 ~l~----~~~~~vIiVDD~~~~~~~~~-~NgI~i~~f~~--------~~~D~~L~~l~~~L~~l~~ 159 (162)
T TIGR02251 107 LVG----KDLSKVIIIDNSPYSYSLQP-DNAIPIKSWFG--------DPNDTELLNLIPFLEGLRF 159 (162)
T ss_pred hcC----CChhhEEEEeCChhhhccCc-cCEeecCCCCC--------CCCHHHHHHHHHHHHHHhc
Confidence 754 46789999999999998874 45667888852 1222357777788877643
No 5
>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear. It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....
Probab=99.76 E-value=2e-18 Score=166.75 Aligned_cols=118 Identities=22% Similarity=0.267 Sum_probs=84.2
Q ss_pred CceEEEeeCcChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccCCCceEeccCC------Cccch
Q 002537 255 DTSVLVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSG------SRKSL 328 (911)
Q Consensus 255 ~~~~~vKLRPgv~eLr~FL~a~~sk~FElyVyTmG~R~YA~~I~rlLDP~g~lFg~~~l~~RIisresg------~~KsL 328 (911)
.+.+++++|||+++ ||+ .+++.|||+|||+|++.||..|++.|||.+.+|. ++++|+++ ..|+|
T Consensus 30 ~~~~~v~~RP~l~~---FL~-~l~~~~ev~i~T~~~~~ya~~v~~~ldp~~~~~~------~~~~r~~~~~~~~~~~KdL 99 (159)
T PF03031_consen 30 RGGYYVKLRPGLDE---FLE-ELSKHYEVVIWTSASEEYAEPVLDALDPNGKLFS------RRLYRDDCTFDKGSYIKDL 99 (159)
T ss_dssp EEEEEEEE-TTHHH---HHH-HHHHHCEEEEE-SS-HHHHHHHHHHHTTTTSSEE------EEEEGGGSEEETTEEE--G
T ss_pred ccceeEeeCchHHH---HHH-HHHHhceEEEEEeehhhhhhHHHHhhhhhccccc------cccccccccccccccccch
Confidence 45689999999999 998 8899999999999999999999999999999997 55566533 25899
Q ss_pred hhhccCCCCCCcEEEEEcCCcccCCCCCCCCeEEeccccCccCchhhhcccCchHHHHHHHHhhhc
Q 002537 329 FNVFQDGTCHPKMALVIDDRLKVWDDKDQPRVHVVPAFAPYYAPQAEANNAIPVLCVARNIACNVR 394 (911)
Q Consensus 329 ~~lfp~~~~~~~mvVIIDDR~dVW~~~~~~~v~vV~~Y~pf~~~q~e~~~~~p~L~~a~~vl~~Vh 394 (911)
..+. .+.+.+|||||+..+|... +.|++.|++|.... ..+..|.....+|..+.
T Consensus 100 ~~l~----~~~~~vvivDD~~~~~~~~-~~N~i~v~~f~~~~-------~~D~~L~~l~~~L~~l~ 153 (159)
T PF03031_consen 100 SKLG----RDLDNVVIVDDSPRKWALQ-PDNGIPVPPFFGDT-------PNDRELLRLLPFLEELA 153 (159)
T ss_dssp GGSS----S-GGGEEEEES-GGGGTTS-GGGEEE----SSCH-------TT--HHHHHHHHHHHHH
T ss_pred HHHh----hccccEEEEeCCHHHeecc-CCceEEeccccCCC-------cchhHHHHHHHHHHHhC
Confidence 9884 3578999999999999886 56788899986554 22234666666766654
No 6
>PHA02701 ORF020 dsRNA-binding PKR inhibitor; Provisional
Probab=99.58 E-value=6.4e-15 Score=149.03 Aligned_cols=70 Identities=17% Similarity=0.268 Sum_probs=64.0
Q ss_pred CCCCchHHHHHHHHhcCCCeEEEEeee--cCCCceEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHHHh
Q 002537 703 STETPSGVLQDIAMKCGTKVEFRPALV--ASTELQFSIEAWFAGEKIGEGIGRTRREAQRQAAEGSIKHLAN 772 (911)
Q Consensus 703 ~~~n~KT~LQE~~Qk~~~~~~Y~~v~~--~~Hd~~FtveV~I~Ge~~G~G~GkSKKEAEq~AAk~AL~~L~~ 772 (911)
...+|||.||||+|+.+..++|+++.+ ++|.++|+++|+|+|+.+|+|.|+|||+|||+||+.||+.|..
T Consensus 106 k~~DpKS~LQE~~Q~~~~~l~Y~li~~~GpdH~~~Ftv~V~V~g~~~g~G~G~SKKeAEQ~AAk~AL~~L~~ 177 (183)
T PHA02701 106 KTLNPVSAVNEFCMRTHRPLEFCETRSGGHDHCPLFTCTIVVSGKVVATASGCSKKLARHAACADALTILIN 177 (183)
T ss_pred CCCCccHHHHHHHHhcCCCCeEEEEEeECCCCCceEEEEEEECCEEEEEEEeCCHHHHHHHHHHHHHHHHHh
Confidence 345899999999999987669998875 6899999999999999999999999999999999999999955
No 7
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=99.57 E-value=1.7e-14 Score=139.79 Aligned_cols=102 Identities=24% Similarity=0.278 Sum_probs=80.9
Q ss_pred CCceEEEeeCcChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccCCCceEeccCC------Cccc
Q 002537 254 RDTSVLVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSG------SRKS 327 (911)
Q Consensus 254 r~~~~~vKLRPgv~eLr~FL~a~~sk~FElyVyTmG~R~YA~~I~rlLDP~g~lFg~~~l~~RIisresg------~~Ks 327 (911)
....+++++|||+.+ ||+ .+++.|++.|+|++.+.||..+++.||+...+| ++|+++++. ..|.
T Consensus 38 ~~~~~~v~l~pG~~e---~L~-~L~~~~~l~I~Ts~~~~~~~~il~~l~~~~~~f------~~i~~~~d~~~~KP~~~k~ 107 (148)
T smart00577 38 HPHGVYVKKRPGVDE---FLK-RASELFELVVFTAGLRMYADPVLDLLDPKKYFG------YRRLFRDECVFVKGKYVKD 107 (148)
T ss_pred ceEEEEEEECCCHHH---HHH-HHHhccEEEEEeCCcHHHHHHHHHHhCcCCCEe------eeEEECccccccCCeEeec
Confidence 345799999999999 554 445679999999999999999999999976444 488988654 2345
Q ss_pred hhhhccCCCCCCcEEEEEcCCcccCCCCCCCCeEEeccccCcc
Q 002537 328 LFNVFQDGTCHPKMALVIDDRLKVWDDKDQPRVHVVPAFAPYY 370 (911)
Q Consensus 328 L~~lfp~~~~~~~mvVIIDDR~dVW~~~~~~~v~vV~~Y~pf~ 370 (911)
|+++ . ++++-+++|||+...|.... .+.+.|++|+++.
T Consensus 108 l~~l-~---~~p~~~i~i~Ds~~~~~aa~-~ngI~i~~f~~~~ 145 (148)
T smart00577 108 LSLL-G---RDLSNVIIIDDSPDSWPFHP-ENLIPIKPWFGDP 145 (148)
T ss_pred HHHc-C---CChhcEEEEECCHHHhhcCc-cCEEEecCcCCCC
Confidence 6544 2 67899999999999999874 5667899998764
No 8
>PHA03103 double-strand RNA-binding protein; Provisional
Probab=99.51 E-value=5.1e-14 Score=142.96 Aligned_cols=68 Identities=21% Similarity=0.312 Sum_probs=60.5
Q ss_pred CCCchHHHHHHHHhcCCCeEEEEeee--cCCCceEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHHHh
Q 002537 704 TETPSGVLQDIAMKCGTKVEFRPALV--ASTELQFSIEAWFAGEKIGEGIGRTRREAQRQAAEGSIKHLAN 772 (911)
Q Consensus 704 ~~n~KT~LQE~~Qk~~~~~~Y~~v~~--~~Hd~~FtveV~I~Ge~~G~G~GkSKKEAEq~AAk~AL~~L~~ 772 (911)
..+|||.||||||+++....| ++.+ ++|+++|+++|+|+|+.+|+|.|+|||+|||+||+.||..|..
T Consensus 108 ~kNpKS~LQE~~Qk~~~~~y~-~i~~~Gp~H~p~F~v~V~I~g~~~g~G~G~SKKeAEQ~AAk~AL~~L~~ 177 (183)
T PHA03103 108 DKNPCTVINEYCQITSRDWSI-NITSSGPSHSPTFTASVIISGIKFKPAIGSTKKEAKNNAAKLAMDKILN 177 (183)
T ss_pred cCChhHHHHHHHHHhCCCeEE-EEEeeCCCCCceEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHHHHh
Confidence 458999999999999877644 4443 6899999999999999999999999999999999999999955
No 9
>COG5190 FCP1 TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=99.50 E-value=1.2e-14 Score=161.50 Aligned_cols=89 Identities=34% Similarity=0.555 Sum_probs=83.1
Q ss_pred CCCCceEEEeeCcChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccCCCceEeccCC---Cccch
Q 002537 252 QIRDTSVLVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSG---SRKSL 328 (911)
Q Consensus 252 ~~r~~~~~vKLRPgv~eLr~FL~a~~sk~FElyVyTmG~R~YA~~I~rlLDP~g~lFg~~~l~~RIisresg---~~KsL 328 (911)
....|+|++|.||+... |+. +++++||+|+||||++.||.++++++||.|++|+ +|+.+++.. ..|++
T Consensus 67 ~~~~~~~~~k~~~~l~~---~~~-~i~~~~e~~~~~~~~~~~~~~~~~i~d~~g~~~~-----d~~~~~~~~~~~~~~s~ 137 (390)
T COG5190 67 VQEKCAYYVKARPKLFP---FLT-KISPLYELHIYTMGTRAYAERIAKIIDPTGKLFN-----DRILSRDESGSLSQKSL 137 (390)
T ss_pred ccccccceeeecccccc---hhh-hhchhcceeeEeeccccchhhhhhcccccccccc-----cccccccccccchhhhh
Confidence 34578999999999988 998 9999999999999999999999999999999999 999999543 67999
Q ss_pred hhhccCCCCCCcEEEEEcCCcccC
Q 002537 329 FNVFQDGTCHPKMALVIDDRLKVW 352 (911)
Q Consensus 329 ~~lfp~~~~~~~mvVIIDDR~dVW 352 (911)
.++|| ++.+|++|+||+.+||
T Consensus 138 ~~l~p---~~~n~~vi~~d~~~~~ 158 (390)
T COG5190 138 SRLFP---KDQNMVVIIDDRGDVW 158 (390)
T ss_pred hhcCc---cccccccccccccccC
Confidence 99999 8999999999999999
No 10
>smart00358 DSRM Double-stranded RNA binding motif.
Probab=99.47 E-value=2.3e-13 Score=113.04 Aligned_cols=64 Identities=31% Similarity=0.539 Sum_probs=59.6
Q ss_pred chHHHHHHHHhcCCCeEEEEeee--cCCCceEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHH
Q 002537 707 PSGVLQDIAMKCGTKVEFRPALV--ASTELQFSIEAWFAGEKIGEGIGRTRREAQRQAAEGSIKHL 770 (911)
Q Consensus 707 ~KT~LQE~~Qk~~~~~~Y~~v~~--~~Hd~~FtveV~I~Ge~~G~G~GkSKKEAEq~AAk~AL~~L 770 (911)
||+.||||||+++..+.|+.... ++|.+.|++.|+|+|+.++.|.|+|||+||++||+.||+.|
T Consensus 1 p~~~L~e~~~~~~~~~~y~~~~~~g~~~~~~f~~~v~i~~~~~~~g~g~sKk~Ak~~AA~~al~~L 66 (67)
T smart00358 1 PKSLLQELAQKRGLPPEYELVKEEGPDHAPRFTVTVKVGGEYTGEGEGSSKKEAKQRAAEAALRSL 66 (67)
T ss_pred CchHHHHHHHHCCCCCEEEEEeeeCCCCCCcEEEEEEECCEEEEEeccCCHHHHHHHHHHHHHHhc
Confidence 68999999999999899998763 57889999999999999999999999999999999999887
No 11
>cd00048 DSRM Double-stranded RNA binding motif. Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR, RNA helicases, Drosophila staufen protein, E. coli RNase III, RNases H1, and dsRNA dependent adenosine deaminases.
Probab=99.45 E-value=3.8e-13 Score=111.25 Aligned_cols=65 Identities=31% Similarity=0.536 Sum_probs=58.7
Q ss_pred CchHHHHHHHHhcC-CCeEEEEeee--cCCCceEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHH
Q 002537 706 TPSGVLQDIAMKCG-TKVEFRPALV--ASTELQFSIEAWFAGEKIGEGIGRTRREAQRQAAEGSIKHL 770 (911)
Q Consensus 706 n~KT~LQE~~Qk~~-~~~~Y~~v~~--~~Hd~~FtveV~I~Ge~~G~G~GkSKKEAEq~AAk~AL~~L 770 (911)
+||+.|+||||+++ ..+.|+.... ++|.+.|++.|.|+|+.+++|.|+|||+||+.||+.||+.|
T Consensus 1 ~p~~~L~e~~~~~~~~~~~y~~~~~~g~~~~~~f~~~v~i~~~~~~~g~g~sKk~Ak~~AA~~al~~L 68 (68)
T cd00048 1 NPKSLLQELAQKRGKPLPEYELVEEEGPDHAPRFTVEVTVGGKITGEGEGSSKKEAKQNAAEAALRKL 68 (68)
T ss_pred ChHHHHHHHHHHcCCCCCeEEEeeeeCCCCCCeEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHhC
Confidence 58999999999985 5789998654 46789999999999999999999999999999999999865
No 12
>PF00035 dsrm: Double-stranded RNA binding motif; InterPro: IPR001159 The DsRBD domain is found in a variety of RNA-binding proteins with different structures and exhibiting a diversity of functions []. It is involved in localisation of at least five different mRNAs in the early Drosophila embryo and by interferon-induced protein kinase in humans, which is part of the cellular response to dsRNA.; GO: 0003725 double-stranded RNA binding, 0005622 intracellular; PDB: 1EKZ_A 1STU_A 1QU6_A 2L2M_A 3ADJ_A 1WHN_A 3LLH_B 2B7V_A 2L3J_A 1UHZ_A ....
Probab=99.44 E-value=7.1e-13 Score=110.77 Aligned_cols=64 Identities=25% Similarity=0.393 Sum_probs=57.2
Q ss_pred chHHHHHHHHhcCCCeEEEEeee--cCCC-ceEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHH
Q 002537 707 PSGVLQDIAMKCGTKVEFRPALV--ASTE-LQFSIEAWFAGEKIGEGIGRTRREAQRQAAEGSIKHL 770 (911)
Q Consensus 707 ~KT~LQE~~Qk~~~~~~Y~~v~~--~~Hd-~~FtveV~I~Ge~~G~G~GkSKKEAEq~AAk~AL~~L 770 (911)
||+.||||||+.+..+.|..... ++|. ++|+++|+|+|..++.|.|+|||+||+.||+.||+.|
T Consensus 1 ~~~~L~e~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~i~~~~~~~g~g~sKk~Ak~~AA~~al~~L 67 (67)
T PF00035_consen 1 PKSRLNEYCQKNKFPPPYYYIEEEGPSHHRPRFICTVYIDGKEYGEGEGSSKKEAKQQAAKKALQKL 67 (67)
T ss_dssp HHHHHHHHHHHCTSSEEEEEEEEESSSSSSEEEEEEEEETTEEEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCCCEEEEEEeCCCCCCceEEEEEEECCEEEeEeccCCHHHHHHHHHHHHHHhC
Confidence 68999999999999887776544 3454 8999999999999999999999999999999999987
No 13
>PF00035 dsrm: Double-stranded RNA binding motif; InterPro: IPR001159 The DsRBD domain is found in a variety of RNA-binding proteins with different structures and exhibiting a diversity of functions []. It is involved in localisation of at least five different mRNAs in the early Drosophila embryo and by interferon-induced protein kinase in humans, which is part of the cellular response to dsRNA.; GO: 0003725 double-stranded RNA binding, 0005622 intracellular; PDB: 1EKZ_A 1STU_A 1QU6_A 2L2M_A 3ADJ_A 1WHN_A 3LLH_B 2B7V_A 2L3J_A 1UHZ_A ....
Probab=99.44 E-value=3.5e-13 Score=112.59 Aligned_cols=66 Identities=26% Similarity=0.323 Sum_probs=59.0
Q ss_pred hHHHHHHHHHhcCCceeEeecCCCCCCCCCC-CcEEEEEEECCEEEceeecCCHHHHHHHHHHHHHHHH
Q 002537 839 SVSALKELCMTEGLGVVFQQQPPSSANSVQK-DEVYAQVEIDGQVLGKGIGSTWDEAKMQVFLLDIQNF 906 (911)
Q Consensus 839 yIglLNELCqkegl~v~f~~~~~~~sgg~h~-~eF~~qVeIgGk~yg~G~GsTKKEAKqqAAklAl~kl 906 (911)
|++.|+|||++.++.++|+... . .++.+. +.|.|+|+|+|++|+.|.|+|||+||++||+.||+.|
T Consensus 1 ~~~~L~e~~~~~~~~~~~~~~~-~-~~~~~~~~~f~~~~~i~~~~~~~g~g~sKk~Ak~~AA~~al~~L 67 (67)
T PF00035_consen 1 PKSRLNEYCQKNKFPPPYYYIE-E-EGPSHHRPRFICTVYIDGKEYGEGEGSSKKEAKQQAAKKALQKL 67 (67)
T ss_dssp HHHHHHHHHHHCTSSEEEEEEE-E-ESSSSSSEEEEEEEEETTEEEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCCCEEEEE-E-eCCCCCCceEEEEEEECCEEEeEeccCCHHHHHHHHHHHHHHhC
Confidence 6899999999999999999762 2 355555 7999999999999999999999999999999999986
No 14
>smart00358 DSRM Double-stranded RNA binding motif.
Probab=99.40 E-value=7.8e-13 Score=109.82 Aligned_cols=66 Identities=23% Similarity=0.311 Sum_probs=59.3
Q ss_pred hHHHHHHHHHhcCCceeEeecCCCCCCCCCCCcEEEEEEECCEEEceeecCCHHHHHHHHHHHHHHHH
Q 002537 839 SVSALKELCMTEGLGVVFQQQPPSSANSVQKDEVYAQVEIDGQVLGKGIGSTWDEAKMQVFLLDIQNF 906 (911)
Q Consensus 839 yIglLNELCqkegl~v~f~~~~~~~sgg~h~~eF~~qVeIgGk~yg~G~GsTKKEAKqqAAklAl~kl 906 (911)
|++.|+|+||++++.+.|.... ..++.|++.|.|+|.|+|+.++.|.|.|||+||++||+.||..|
T Consensus 1 p~~~L~e~~~~~~~~~~y~~~~--~~g~~~~~~f~~~v~i~~~~~~~g~g~sKk~Ak~~AA~~al~~L 66 (67)
T smart00358 1 PKSLLQELAQKRGLPPEYELVK--EEGPDHAPRFTVTVKVGGEYTGEGEGSSKKEAKQRAAEAALRSL 66 (67)
T ss_pred CchHHHHHHHHCCCCCEEEEEe--eeCCCCCCcEEEEEEECCEEEEEeccCCHHHHHHHHHHHHHHhc
Confidence 5789999999999988888762 14677888999999999999999999999999999999999886
No 15
>PRK12371 ribonuclease III; Reviewed
Probab=99.39 E-value=1.1e-12 Score=137.71 Aligned_cols=68 Identities=22% Similarity=0.221 Sum_probs=62.0
Q ss_pred CCchHHHHHHHHhcC-CCeEEEEeee--cCCCceEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHHHh
Q 002537 705 ETPSGVLQDIAMKCG-TKVEFRPALV--ASTELQFSIEAWFAGEKIGEGIGRTRREAQRQAAEGSIKHLAN 772 (911)
Q Consensus 705 ~n~KT~LQE~~Qk~~-~~~~Y~~v~~--~~Hd~~FtveV~I~Ge~~G~G~GkSKKEAEq~AAk~AL~~L~~ 772 (911)
.+||+.||||||+.+ ..++|+++.+ ++|++.|+++|+|+|+.+|+|.|+|||+|||.||+.||++|..
T Consensus 161 ~d~Ks~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~v~v~v~~~~~~~g~G~sKK~Ae~~AA~~al~~~~~ 231 (235)
T PRK12371 161 RDAKTELQEWAHAQFGVTPVYRVDSRSGPDHDPRFTVEVEVKGFAPETGEGRSKRAAEQVAAEKMLEREGV 231 (235)
T ss_pred CCHHHHHHHHHHhcCCCCCeEEEEEeecCCCCCeEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHHhhh
Confidence 379999999999876 4689998865 6899999999999999999999999999999999999999864
No 16
>cd00048 DSRM Double-stranded RNA binding motif. Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR, RNA helicases, Drosophila staufen protein, E. coli RNase III, RNases H1, and dsRNA dependent adenosine deaminases.
Probab=99.38 E-value=1.6e-12 Score=107.53 Aligned_cols=67 Identities=19% Similarity=0.243 Sum_probs=57.9
Q ss_pred ChHHHHHHHHHhc-CCceeEeecCCCCCCCCCCCcEEEEEEECCEEEceeecCCHHHHHHHHHHHHHHHH
Q 002537 838 GSVSALKELCMTE-GLGVVFQQQPPSSANSVQKDEVYAQVEIDGQVLGKGIGSTWDEAKMQVFLLDIQNF 906 (911)
Q Consensus 838 NyIglLNELCqke-gl~v~f~~~~~~~sgg~h~~eF~~qVeIgGk~yg~G~GsTKKEAKqqAAklAl~kl 906 (911)
||++.|+|+||++ ...+.|.... ..++.|.+.|+|.|.|+|+.++.|.|+|||+||+.||+.||..|
T Consensus 1 ~p~~~L~e~~~~~~~~~~~y~~~~--~~g~~~~~~f~~~v~i~~~~~~~g~g~sKk~Ak~~AA~~al~~L 68 (68)
T cd00048 1 NPKSLLQELAQKRGKPLPEYELVE--EEGPDHAPRFTVEVTVGGKITGEGEGSSKKEAKQNAAEAALRKL 68 (68)
T ss_pred ChHHHHHHHHHHcCCCCCeEEEee--eeCCCCCCeEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHhC
Confidence 7899999999998 4467777642 14667778999999999999999999999999999999999875
No 17
>KOG1605 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]
Probab=99.36 E-value=2.6e-13 Score=144.61 Aligned_cols=119 Identities=22% Similarity=0.334 Sum_probs=94.3
Q ss_pred ceEEEeeCcChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccCCCceEec-cCC-Cccchhhhcc
Q 002537 256 TSVLVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCV-KSG-SRKSLFNVFQ 333 (911)
Q Consensus 256 ~~~~vKLRPgv~eLr~FL~a~~sk~FElyVyTmG~R~YA~~I~rlLDP~g~lFg~~~l~~RIisr-esg-~~KsL~~lfp 333 (911)
..+||+.||++.+ ||. +++++||+.|||.+...||..|+.+|||++++|. +++.|=.|. .+| ..|+|..+-
T Consensus 126 ~~~yV~kRP~vde---FL~-~~s~~~e~v~FTAs~~~Ya~~v~D~LD~~~~i~~--~RlyR~~C~~~~g~yvKdls~~~- 198 (262)
T KOG1605|consen 126 HQVYVRKRPHVDE---FLS-RVSKWYELVLFTASLEVYADPLLDILDPDRKIIS--HRLYRDSCTLKDGNYVKDLSVLG- 198 (262)
T ss_pred eEEEEEcCCCHHH---HHH-HhHHHHHHHHHHhhhHHHHHHHHHHccCCCCeee--eeecccceEeECCcEEEEcceec-
Confidence 4689999999999 999 9999999999999999999999999999999998 555565676 444 678886544
Q ss_pred CCCCCCcEEEEEcCCcccCCCCCCCCeEEeccccCccCchhhhcccCchHHHHHHHHhhh
Q 002537 334 DGTCHPKMALVIDDRLKVWDDKDQPRVHVVPAFAPYYAPQAEANNAIPVLCVARNIACNV 393 (911)
Q Consensus 334 ~~~~~~~mvVIIDDR~dVW~~~~~~~v~vV~~Y~pf~~~q~e~~~~~p~L~~a~~vl~~V 393 (911)
++.+-++||||.......+.+|-| -|++| |..+.+. .|...+..|+.+
T Consensus 199 ---~dL~~viIiDNsP~sy~~~p~NgI-pI~sw--~~d~~D~------eLL~LlpfLe~L 246 (262)
T KOG1605|consen 199 ---RDLSKVIIVDNSPQSYRLQPENGI-PIKSW--FDDPTDT------ELLKLLPFLEAL 246 (262)
T ss_pred ---cCcccEEEEcCChHHhccCccCCC-ccccc--ccCCChH------HHHHHHHHHHHh
Confidence 477899999999999998866666 57776 3333322 356666666654
No 18
>PHA03103 double-strand RNA-binding protein; Provisional
Probab=99.32 E-value=4.3e-12 Score=129.09 Aligned_cols=71 Identities=24% Similarity=0.259 Sum_probs=63.2
Q ss_pred CCCChHHHHHHHHHhcCCceeEeecCCCCCCCCCCCcEEEEEEECCEEEceeecCCHHHHHHHHHHHHHHHHHh
Q 002537 835 KLMGSVSALKELCMTEGLGVVFQQQPPSSANSVQKDEVYAQVEIDGQVLGKGIGSTWDEAKMQVFLLDIQNFLA 908 (911)
Q Consensus 835 ~~~NyIglLNELCqkegl~v~f~~~~~~~sgg~h~~eF~~qVeIgGk~yg~G~GsTKKEAKqqAAklAl~kl~~ 908 (911)
+..||+++|+||||++++...|. . .+.|+.|.+.|+++|.|+|+.|+.|.|+|||+|+|+||+.||..|..
T Consensus 107 K~kNpKS~LQE~~Qk~~~~~y~~-i--~~~Gp~H~p~F~v~V~I~g~~~g~G~G~SKKeAEQ~AAk~AL~~L~~ 177 (183)
T PHA03103 107 KDKNPCTVINEYCQITSRDWSIN-I--TSSGPSHSPTFTASVIISGIKFKPAIGSTKKEAKNNAAKLAMDKILN 177 (183)
T ss_pred ccCChhHHHHHHHHHhCCCeEEE-E--EeeCCCCCceEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHHHHh
Confidence 46799999999999999887443 3 23689999999999999999999999999999999999999999853
No 19
>COG0571 Rnc dsRNA-specific ribonuclease [Transcription]
Probab=99.32 E-value=3.9e-12 Score=133.93 Aligned_cols=69 Identities=29% Similarity=0.498 Sum_probs=63.6
Q ss_pred CCchHHHHHHHHhcCC-CeEEEEeee--cCCCceEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHHHhh
Q 002537 705 ETPSGVLQDIAMKCGT-KVEFRPALV--ASTELQFSIEAWFAGEKIGEGIGRTRREAQRQAAEGSIKHLANV 773 (911)
Q Consensus 705 ~n~KT~LQE~~Qk~~~-~~~Y~~v~~--~~Hd~~FtveV~I~Ge~~G~G~GkSKKEAEq~AAk~AL~~L~~~ 773 (911)
..|||.||||+|+.+. .+.|+++.. ++|++.|+++|+++|..+|+|.|+|||+|||.||+.||++|...
T Consensus 161 ~D~Kt~LQe~~q~~~~~~p~Y~~v~~~g~~h~~~F~v~v~v~~~~~g~G~G~skk~AEq~AA~~al~~l~~~ 232 (235)
T COG0571 161 KDPKTRLQELLQAQGLVLPEYRLVKEEGPAHDKEFTVEVAVGGKELGTGKGRSKKEAEQAAAEQALKKLGVK 232 (235)
T ss_pred cChhHHHHHHHHhcCCCCCeEEEeeccCCCCCceEEEEEEECCeeEEEecccCHHHHHHHHHHHHHHHhccc
Confidence 5699999999999886 579999987 57999999999999999999999999999999999999999653
No 20
>PHA02701 ORF020 dsRNA-binding PKR inhibitor; Provisional
Probab=99.30 E-value=2.1e-11 Score=123.79 Aligned_cols=72 Identities=18% Similarity=0.248 Sum_probs=64.6
Q ss_pred CCCChHHHHHHHHHhcCCceeEeecCCCCCCCCCCCcEEEEEEECCEEEceeecCCHHHHHHHHHHHHHHHHHh
Q 002537 835 KLMGSVSALKELCMTEGLGVVFQQQPPSSANSVQKDEVYAQVEIDGQVLGKGIGSTWDEAKMQVFLLDIQNFLA 908 (911)
Q Consensus 835 ~~~NyIglLNELCqkegl~v~f~~~~~~~sgg~h~~eF~~qVeIgGk~yg~G~GsTKKEAKqqAAklAl~kl~~ 908 (911)
...||.+.|+||||+++....|... .+.|+.|.+.|++.|.|+|++|+.|.|+|||+|+|+||+.||..|..
T Consensus 106 k~~DpKS~LQE~~Q~~~~~l~Y~li--~~~GpdH~~~Ftv~V~V~g~~~g~G~G~SKKeAEQ~AAk~AL~~L~~ 177 (183)
T PHA02701 106 KTLNPVSAVNEFCMRTHRPLEFCET--RSGGHDHCPLFTCTIVVSGKVVATASGCSKKLARHAACADALTILIN 177 (183)
T ss_pred CCCCccHHHHHHHHhcCCCCeEEEE--EeECCCCCceEEEEEEECCEEEEEEEeCCHHHHHHHHHHHHHHHHHh
Confidence 4679999999999999888877665 33588999999999999999999999999999999999999998853
No 21
>KOG2777 consensus tRNA-specific adenosine deaminase 1 [RNA processing and modification]
Probab=99.28 E-value=8.1e-12 Score=143.16 Aligned_cols=145 Identities=19% Similarity=0.263 Sum_probs=106.6
Q ss_pred eEEEEeee--cCCCceEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHHHhhhcccccCCCCCCCCCCCCcCCccCcc
Q 002537 722 VEFRPALV--ASTELQFSIEAWFAGEKIGEGIGRTRREAQRQAAEGSIKHLANVYMLRVKSDSGSGHGDGSRFSNANENC 799 (911)
Q Consensus 722 ~~Y~~v~~--~~Hd~~FtveV~I~Ge~~G~G~GkSKKEAEq~AAk~AL~~L~~~~~~~~~p~~~~~~~D~s~~~~~~eN~ 799 (911)
..|..+.. +.|.+.|.++|.|+|..+. ||.|++.||+.|++.+.+--.+... .......+++
T Consensus 10 ~~~~~~~q~~p~~~p~~~~~~~v~~~~~~------~k~~~~~~a~~~~~~~~~~~~~~~~---------~~~~~~~~~~- 73 (542)
T KOG2777|consen 10 LQYNLVSQTGPVHAPLFPFSVEVNGQEFP------KKKAKQRAAEKALRVFLQFPEAHLS---------MGGTEGVNED- 73 (542)
T ss_pred cccccccccCCCCCCcccceEEecccccc------cccccchhhhHHHHHHhhcCCcccc---------cCCCCccccc-
Confidence 56666654 6799999999999999886 9999999999999999763221111 1111000100
Q ss_pred cccccccCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCChHHHHHHHHHhcCCceeEeecCCCCCCCCCCCcEEEEEEEC
Q 002537 800 FMGEINSFGGQPLAKDESLSSEPSKLVDPRLEGSKKLMGSVSALKELCMTEGLGVVFQQQPPSSANSVQKDEVYAQVEID 879 (911)
Q Consensus 800 ~~~d~ns~~~~~~~~~~~stSe~s~~~~~~~~~s~~~~NyIglLNELCqkegl~v~f~~~~~~~sgg~h~~eF~~qVeIg 879 (911)
+..+. .+ .. +...+...|+|++|+||++ ++.+.|... .++.|.+.|.|+|+||
T Consensus 74 ~~~~~----------~~-----~~------~~~~~~~~npv~ll~e~~~--~~~~~~~~~----~~~~~~~~F~~~~~vd 126 (542)
T KOG2777|consen 74 LTSDQ----------AD-----AF------LSLGKEGKNPVSLLHELAN--GLFFDFVNE----SGPQHAPKFVMSVVVD 126 (542)
T ss_pred cchhh----------hH-----HH------HhhhhccCCchHHHHHHhc--ccceeeecc----CCCCCCceEEEEEEEC
Confidence 00000 00 00 0112247899999999998 888888887 5788889999999999
Q ss_pred CEEEceeecCCHHHHHHHHHHHHHHHHHhhc
Q 002537 880 GQVLGKGIGSTWDEAKMQVFLLDIQNFLALN 910 (911)
Q Consensus 880 Gk~yg~G~GsTKKEAKqqAAklAl~kl~~~~ 910 (911)
|+.|+.| |.|||+||++||+.||+.|+.++
T Consensus 127 g~~~~~~-~~sKk~ak~~aa~~al~~l~~~~ 156 (542)
T KOG2777|consen 127 GRWFEGG-GRSKKEAKQEAAMAALQVLFKID 156 (542)
T ss_pred CEEccCC-CcchHHHHHHHHHHHHHHHHhcc
Confidence 9999777 99999999999999999998764
No 22
>PRK14718 ribonuclease III; Provisional
Probab=99.26 E-value=1.2e-11 Score=139.12 Aligned_cols=67 Identities=19% Similarity=0.245 Sum_probs=61.1
Q ss_pred CCchHHHHHHHHhcCCC-eEEEEeee--cCCCceEEEEEEECCE-EEEEeecCCHHHHHHHHHHHHHHHHH
Q 002537 705 ETPSGVLQDIAMKCGTK-VEFRPALV--ASTELQFSIEAWFAGE-KIGEGIGRTRREAQRQAAEGSIKHLA 771 (911)
Q Consensus 705 ~n~KT~LQE~~Qk~~~~-~~Y~~v~~--~~Hd~~FtveV~I~Ge-~~G~G~GkSKKEAEq~AAk~AL~~L~ 771 (911)
.+||+.||||+|+++.. ++|+++.+ ++|++.|+++|+|+|. .+|+|.|+|||+|||.||+.||++|.
T Consensus 151 kDyKS~LQE~~Qk~~~~~PeY~li~esGPdH~k~F~V~V~v~g~~~~G~G~G~SKKeAEQ~AAk~AL~kL~ 221 (467)
T PRK14718 151 KDAKTLLQEYLQGHKIALPTYTVVATHGAAHNQQFEVECTVPKLDIKVSGSGASRRAAEQAAAKKALDEVT 221 (467)
T ss_pred cCHHHHHHHHHHhcCCCCCeeEEeeeecCCCCCeEEEEEEECCeeeEEEEEcCCHHHHHHHHHHHHHHHhc
Confidence 36899999999999875 79999865 6899999999999995 55999999999999999999999997
No 23
>PRK12372 ribonuclease III; Reviewed
Probab=99.22 E-value=2.7e-11 Score=135.42 Aligned_cols=67 Identities=19% Similarity=0.233 Sum_probs=60.9
Q ss_pred CchHHHHHHHHhcCCC-eEEEEeee--cCCCceEEEEEEECCE-EEEEeecCCHHHHHHHHHHHHHHHHHh
Q 002537 706 TPSGVLQDIAMKCGTK-VEFRPALV--ASTELQFSIEAWFAGE-KIGEGIGRTRREAQRQAAEGSIKHLAN 772 (911)
Q Consensus 706 n~KT~LQE~~Qk~~~~-~~Y~~v~~--~~Hd~~FtveV~I~Ge-~~G~G~GkSKKEAEq~AAk~AL~~L~~ 772 (911)
+||+.||||+|+++.. ++|+++.+ ++|+++|+++|+|+|. .+|+|.|+|||+|||+||+.||++|..
T Consensus 152 D~KS~LQE~~Q~~~~~~P~Y~lv~e~Gp~h~~~F~V~V~v~g~~~~g~G~G~SKKeAEQ~AAr~AL~kL~~ 222 (413)
T PRK12372 152 DAKTLLQEYLQGHKIALPTYTVVATHGAAHNQQFEVECTVPKLDVKVSGSGASRRAAEQAAAKKALDEVMA 222 (413)
T ss_pred CHHHHHHHHHHhcCCCCCeeEEeeeecCCCCceEEEEEEECCeEEEEEEEeCCHHHHHHHHHHHHHHHHhc
Confidence 5899999999999865 79998865 6899999999999995 568999999999999999999999974
No 24
>PRK00102 rnc ribonuclease III; Reviewed
Probab=99.15 E-value=1.2e-10 Score=119.84 Aligned_cols=69 Identities=25% Similarity=0.436 Sum_probs=62.1
Q ss_pred CCCchHHHHHHHHhcCCC-eEEEEeee--cCCCceEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHHHh
Q 002537 704 TETPSGVLQDIAMKCGTK-VEFRPALV--ASTELQFSIEAWFAGEKIGEGIGRTRREAQRQAAEGSIKHLAN 772 (911)
Q Consensus 704 ~~n~KT~LQE~~Qk~~~~-~~Y~~v~~--~~Hd~~FtveV~I~Ge~~G~G~GkSKKEAEq~AAk~AL~~L~~ 772 (911)
..+||+.||||||+.+.. ++|+++.+ +.|.+.|+++|+|+|+.+|+|.|+|||+||++||+.||++|..
T Consensus 157 ~~~pk~~L~e~~~~~~~~~p~y~~~~~~g~~~~~~f~~~v~i~~~~~~~g~g~skk~Ae~~AA~~Al~~l~~ 228 (229)
T PRK00102 157 VKDYKTRLQELLQGRGLPLPEYELVKEEGPAHDKEFTVEVTVNGKELGEGTGSSKKEAEQAAAKQALKKLKE 228 (229)
T ss_pred cCCHHHHHHHHHHHcCCCCCceEEeeccCCCCCceEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHHHhh
Confidence 457999999999998864 79998765 4678999999999999999999999999999999999999854
No 25
>TIGR02245 HAD_IIID1 HAD-superfamily subfamily IIID hydrolase, TIGR02245. This family of sequences appears to belong to the Haloacid Dehalogenase (HAD) superfamily of enzymes by virtue of the presence of three catalytic domains, in this case: LLVLD(ILV)D(YH)T, I(VMG)IWS, and (DN)(VC)K(PA)Lx{15-17}T(IL)(MH)(FV)DD(IL)(GRS)(RK)N. Since this family has no large "cap" domain between motifs 1 and 2 or between 2 and 3, it is formally a "class III" HAD.
Probab=99.13 E-value=2.4e-10 Score=117.60 Aligned_cols=127 Identities=15% Similarity=0.116 Sum_probs=82.6
Q ss_pred EEEeeCcChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCc-cccccCCCce--E---eccCC--Cccchh
Q 002537 258 VLVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNL-INTKELLDRI--V---CVKSG--SRKSLF 329 (911)
Q Consensus 258 ~~vKLRPgv~eLr~FL~a~~sk~FElyVyTmG~R~YA~~I~rlLDP~g~l-Fg~~~l~~RI--i---sresg--~~KsL~ 329 (911)
+|+..|||+++ ||+ .+++.||+.|||.+...||..+++.|++.+.- |...-+.++- + +...| ..|.|.
T Consensus 42 ~~~~kRP~l~e---FL~-~~~~~feIvVwTAa~~~ya~~~l~~l~~~~~~~~~i~~~ld~~~~~~~~~~~~g~~~vKdL~ 117 (195)
T TIGR02245 42 GEELMRPYLHE---FLT-SAYEDYDIVIWSATSMKWIEIKMTELGVLTNPNYKITFLLDSTAMITVHTPRRGKFDVKPLG 117 (195)
T ss_pred ceEEeCCCHHH---HHH-HHHhCCEEEEEecCCHHHHHHHHHHhcccCCccceEEEEeccccceeeEeeccCcEEEeecH
Confidence 36789999999 999 89999999999999999999999999875421 1100011110 1 11223 368899
Q ss_pred hhccCCC--CCCcEEEEEcCCcccCCCCCCCCeEEeccccCccCchhhhcccCchHHHHHHHHhhh
Q 002537 330 NVFQDGT--CHPKMALVIDDRLKVWDDKDQPRVHVVPAFAPYYAPQAEANNAIPVLCVARNIACNV 393 (911)
Q Consensus 330 ~lfp~~~--~~~~mvVIIDDR~dVW~~~~~~~v~vV~~Y~pf~~~q~e~~~~~p~L~~a~~vl~~V 393 (911)
.+....+ .+.+-+|||||.......+.+|. +.|++|. ....+ ...+-.|..++..|+.+
T Consensus 118 ~lw~~l~~~~~~~ntiiVDd~p~~~~~~P~N~-i~I~~f~--~~~~~--~~~D~eL~~L~~yL~~l 178 (195)
T TIGR02245 118 VIWALLPEFYSMKNTIMFDDLRRNFLMNPQNG-LKIRPFK--KAHAN--RGTDQELLKLTQYLKTI 178 (195)
T ss_pred HhhhhcccCCCcccEEEEeCCHHHHhcCCCCc-cccCCcc--ccCCC--CcccHHHHHHHHHHHHH
Confidence 8743211 25678999999999988775554 4578773 21111 11222465666666665
No 26
>TIGR02191 RNaseIII ribonuclease III, bacterial. This family consists of bacterial examples of ribonuclease III. This enzyme cleaves double-stranded rRNA. It is involved in processing ribosomal RNA precursors. It is found even in minimal genones such as Mycoplasma genitalium and Buchnera aphidicola, and in some cases has been shown to be an essential gene. These bacterial proteins contain a double-stranded RNA binding motif (pfam00035) and a ribonuclease III domain (pfam00636). Eukaryotic homologs tend to be much longer proteins with additional domains, localized to the nucleus, and not included in this family.
Probab=99.08 E-value=3.1e-10 Score=115.81 Aligned_cols=67 Identities=28% Similarity=0.458 Sum_probs=60.5
Q ss_pred CCCchHHHHHHHHhcCC-CeEEEEeee--cCCCceEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHH
Q 002537 704 TETPSGVLQDIAMKCGT-KVEFRPALV--ASTELQFSIEAWFAGEKIGEGIGRTRREAQRQAAEGSIKHL 770 (911)
Q Consensus 704 ~~n~KT~LQE~~Qk~~~-~~~Y~~v~~--~~Hd~~FtveV~I~Ge~~G~G~GkSKKEAEq~AAk~AL~~L 770 (911)
..+||+.||||||+.+. .++|+++.+ +.|.+.|++.|+++|+.+|+|.|+|||+||++||+.||++|
T Consensus 151 ~~~pk~~L~e~~~~~~~~~p~y~~~~~~g~~~~~~f~~~v~~~~~~~~~g~g~skk~A~~~AA~~Al~~l 220 (220)
T TIGR02191 151 LKDYKTALQEWAQARGKPLPEYRLIKEEGPDHDKEFTVEVSVNGEPYGEGKGKSKKEAEQNAAKAALEKL 220 (220)
T ss_pred cCChHHHHHHHHHHcCCCCceEEEecccCCCCCceEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHhC
Confidence 45799999999999875 689998754 46889999999999999999999999999999999999875
No 27
>TIGR02191 RNaseIII ribonuclease III, bacterial. This family consists of bacterial examples of ribonuclease III. This enzyme cleaves double-stranded rRNA. It is involved in processing ribosomal RNA precursors. It is found even in minimal genones such as Mycoplasma genitalium and Buchnera aphidicola, and in some cases has been shown to be an essential gene. These bacterial proteins contain a double-stranded RNA binding motif (pfam00035) and a ribonuclease III domain (pfam00636). Eukaryotic homologs tend to be much longer proteins with additional domains, localized to the nucleus, and not included in this family.
Probab=98.93 E-value=2.6e-09 Score=109.03 Aligned_cols=70 Identities=19% Similarity=0.282 Sum_probs=60.8
Q ss_pred CCCChHHHHHHHHHhcCCc-eeEeecCCCCCCCCCCCcEEEEEEECCEEEceeecCCHHHHHHHHHHHHHHHH
Q 002537 835 KLMGSVSALKELCMTEGLG-VVFQQQPPSSANSVQKDEVYAQVEIDGQVLGKGIGSTWDEAKMQVFLLDIQNF 906 (911)
Q Consensus 835 ~~~NyIglLNELCqkegl~-v~f~~~~~~~sgg~h~~eF~~qVeIgGk~yg~G~GsTKKEAKqqAAklAl~kl 906 (911)
...||++.|+|+||++++. ..|..+. ..|..|.+.|.|+|.++|+.++.|.|+|||+||++||+.||++|
T Consensus 150 ~~~~pk~~L~e~~~~~~~~~p~y~~~~--~~g~~~~~~f~~~v~~~~~~~~~g~g~skk~A~~~AA~~Al~~l 220 (220)
T TIGR02191 150 TLKDYKTALQEWAQARGKPLPEYRLIK--EEGPDHDKEFTVEVSVNGEPYGEGKGKSKKEAEQNAAKAALEKL 220 (220)
T ss_pred ccCChHHHHHHHHHHcCCCCceEEEec--ccCCCCCceEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHhC
Confidence 4679999999999998874 6776552 24677888999999999999999999999999999999999875
No 28
>PRK00102 rnc ribonuclease III; Reviewed
Probab=98.92 E-value=3.1e-09 Score=109.48 Aligned_cols=71 Identities=21% Similarity=0.330 Sum_probs=61.4
Q ss_pred CCCChHHHHHHHHHhcCCce-eEeecCCCCCCCCCCCcEEEEEEECCEEEceeecCCHHHHHHHHHHHHHHHHH
Q 002537 835 KLMGSVSALKELCMTEGLGV-VFQQQPPSSANSVQKDEVYAQVEIDGQVLGKGIGSTWDEAKMQVFLLDIQNFL 907 (911)
Q Consensus 835 ~~~NyIglLNELCqkegl~v-~f~~~~~~~sgg~h~~eF~~qVeIgGk~yg~G~GsTKKEAKqqAAklAl~kl~ 907 (911)
...||+..|+|+||++++.. .|... ..+|+.|.+.|.|+|.|+|+.+|.|.|+|||+||++||+.||++|.
T Consensus 156 ~~~~pk~~L~e~~~~~~~~~p~y~~~--~~~g~~~~~~f~~~v~i~~~~~~~g~g~skk~Ae~~AA~~Al~~l~ 227 (229)
T PRK00102 156 LVKDYKTRLQELLQGRGLPLPEYELV--KEEGPAHDKEFTVEVTVNGKELGEGTGSSKKEAEQAAAKQALKKLK 227 (229)
T ss_pred ccCCHHHHHHHHHHHcCCCCCceEEe--eccCCCCCceEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHHHh
Confidence 45799999999999998864 45443 2247778889999999999999999999999999999999999885
No 29
>KOG4334 consensus Uncharacterized conserved protein, contains double-stranded RNA-binding motif and WW domain [General function prediction only]
Probab=98.86 E-value=8.1e-09 Score=116.50 Aligned_cols=182 Identities=14% Similarity=0.083 Sum_probs=112.6
Q ss_pred cCCCCCCchHHHHHHHHhcCC-CeEEEEeeecCCCceEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHHHhhhcccc
Q 002537 700 DVSSTETPSGVLQDIAMKCGT-KVEFRPALVASTELQFSIEAWFAGEKIGEGIGRTRREAQRQAAEGSIKHLANVYMLRV 778 (911)
Q Consensus 700 ~~~~~~n~KT~LQE~~Qk~~~-~~~Y~~v~~~~Hd~~FtveV~I~Ge~~G~G~GkSKKEAEq~AAk~AL~~L~~~~~~~~ 778 (911)
.+.+.......|+||+|.+.. .+.|+.-......-.|.+.|.+|+-.||.|.|.|||.|+..||+++|++|........
T Consensus 370 ~npngks~vCiLhEy~q~~lk~~pvyef~e~~n~stpysa~v~~d~~~yGsG~g~sKK~Ak~~AAR~tLeiLIPd~~~~~ 449 (650)
T KOG4334|consen 370 ANPNGKSKVCILHEYAQQCLKSLPVYEFAENDNNSTPYSAGVLPDLFPYGSGVGASKKTAKLVAARDTLEILIPDLRVSE 449 (650)
T ss_pred eCCCCceeeehHHHHHHHHhhhcceeehhhccCCCCcccccccccccccccccccchHHHHHHHHHHHHHHhcchhhhcc
Confidence 344555668999999999875 4799765445667789999999999999999999999999999999999976543111
Q ss_pred cCCCCCCCCCCCCcCCccCcccccccccCCCCCC-CCCCCCCCCCCCCCCCcccCCCCCCChHHHHHHHH-HhcCC---c
Q 002537 779 KSDSGSGHGDGSRFSNANENCFMGEINSFGGQPL-AKDESLSSEPSKLVDPRLEGSKKLMGSVSALKELC-MTEGL---G 853 (911)
Q Consensus 779 ~p~~~~~~~D~s~~~~~~eN~~~~d~ns~~~~~~-~~~~~stSe~s~~~~~~~~~s~~~~NyIglLNELC-qkegl---~ 853 (911)
. -+|++-++.. -..|.. ..=+-...+.+|..- .-+....-.|-.+|.+-- ...|| .
T Consensus 450 ~---------------n~~d~k~~~~--~k~q~~le~F~~I~Iedprv~e--~ctk~~~psPy~iL~~cl~Rn~g~~d~~ 510 (650)
T KOG4334|consen 450 D---------------NVCDGKVEED--GKQQGFLELFKKIKIEDPRVVE--MCTKCAIPSPYNILRDCLSRNLGWNDLV 510 (650)
T ss_pred c---------------cccccccccc--ccchhHHHHhhcccccCchHHH--HhhhcCCCCHHHHHHHHHHhhcCCccee
Confidence 1 0233333210 000000 000001111111100 011112334555565422 22344 2
Q ss_pred eeEeecCCCCCCCCCCCcEEEEEEECCEEEceeecCCHHHHHHHHHHHHHHHHH
Q 002537 854 VVFQQQPPSSANSVQKDEVYAQVEIDGQVLGKGIGSTWDEAKMQVFLLDIQNFL 907 (911)
Q Consensus 854 v~f~~~~~~~sgg~h~~eF~~qVeIgGk~yg~G~GsTKKEAKqqAAklAl~kl~ 907 (911)
+.|+-. .++.++-+|.+.| |+.-.+|+.++|+++||.|.+..|++|+
T Consensus 511 ik~E~i----~~~nqkse~im~~---Gkht~~~~cknkr~gkQlASQ~ilq~lH 557 (650)
T KOG4334|consen 511 IKKEMI----GNGNQKSEVIMIL---GKHTEEAECKNKRQGKQLASQRILQKLH 557 (650)
T ss_pred eeeecc----CCCCccceeEeee---ccceeeeeeechhHHHHHHHHHHHHHhC
Confidence 333333 3566667888654 5556699999999999999999999875
No 30
>PRK12371 ribonuclease III; Reviewed
Probab=98.86 E-value=5.7e-09 Score=109.95 Aligned_cols=70 Identities=14% Similarity=0.067 Sum_probs=60.0
Q ss_pred CCChHHHHHHHHHhcCC-ceeEeecCCCCCCCCCCCcEEEEEEECCEEEceeecCCHHHHHHHHHHHHHHHHH
Q 002537 836 LMGSVSALKELCMTEGL-GVVFQQQPPSSANSVQKDEVYAQVEIDGQVLGKGIGSTWDEAKMQVFLLDIQNFL 907 (911)
Q Consensus 836 ~~NyIglLNELCqkegl-~v~f~~~~~~~sgg~h~~eF~~qVeIgGk~yg~G~GsTKKEAKqqAAklAl~kl~ 907 (911)
..||-+.|+||||+++. ...|... .++|+.|.+.|.++|.|+|+.+|.|.|+|||+|.|.||+.||++|-
T Consensus 160 ~~d~Ks~LqE~~q~~~~~~p~Y~~~--~~~Gp~h~~~F~v~v~v~~~~~~~g~G~sKK~Ae~~AA~~al~~~~ 230 (235)
T PRK12371 160 RRDAKTELQEWAHAQFGVTPVYRVD--SRSGPDHDPRFTVEVEVKGFAPETGEGRSKRAAEQVAAEKMLEREG 230 (235)
T ss_pred cCCHHHHHHHHHHhcCCCCCeEEEE--EeecCCCCCeEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHHhh
Confidence 35999999999998755 3455544 2358889999999999999999999999999999999999999874
No 31
>KOG3732 consensus Staufen and related double-stranded-RNA-binding proteins [Intracellular trafficking, secretion, and vesicular transport; Transcription]
Probab=98.83 E-value=6.1e-09 Score=113.88 Aligned_cols=107 Identities=21% Similarity=0.280 Sum_probs=85.3
Q ss_pred ecCCHHHHHHHHHHHHHHHHHhhhcccccCCCCCCCCCCCCcCCccCcccccccccCCCCCCCCCCCCCCCCCCCCCCcc
Q 002537 751 IGRTRREAQRQAAEGSIKHLANVYMLRVKSDSGSGHGDGSRFSNANENCFMGEINSFGGQPLAKDESLSSEPSKLVDPRL 830 (911)
Q Consensus 751 ~GkSKKEAEq~AAk~AL~~L~~~~~~~~~p~~~~~~~D~s~~~~~~eN~~~~d~ns~~~~~~~~~~~stSe~s~~~~~~~ 830 (911)
.|++..+|+|.||-.||..|...-. +. .+ ....++.
T Consensus 1 ~g~t~~~a~~daaa~al~~l~~~~~--------~~-----------~~------------------~~~~~~g------- 36 (339)
T KOG3732|consen 1 IGKTMQQAKHDAAAKALQVLQNGLI--------SE-----------GV------------------MLNADPG------- 36 (339)
T ss_pred CccchhhhhccccccchhhccCCCc--------ch-----------hc------------------ccccCcc-------
Confidence 4899999999999999999865311 00 00 0011111
Q ss_pred cCCCCCCChHHHHHHHHHhcCCceeEeecCCCCCCCCCCCcEEEEEEECCEEEceeecCCHHHHHHHHHHHHHHHHHhh
Q 002537 831 EGSKKLMGSVSALKELCMTEGLGVVFQQQPPSSANSVQKDEVYAQVEIDGQVLGKGIGSTWDEAKMQVFLLDIQNFLAL 909 (911)
Q Consensus 831 ~~s~~~~NyIglLNELCqkegl~v~f~~~~~~~sgg~h~~eF~~qVeIgGk~yg~G~GsTKKEAKqqAAklAl~kl~~~ 909 (911)
. +.+|++|+|||++.++.++|.-. ++.|++|.+.|++.|+++.. -..|.|++||.||+.||..+|..|..|
T Consensus 37 ----~-KS~IS~l~E~~~r~~~~v~fevl--~eeGp~H~~~fv~rvtvg~~-~a~GeG~sKK~AKh~AA~~~L~~lk~l 107 (339)
T KOG3732|consen 37 ----A-KSPISLLQEYGLRRGLTPVYEVL--REEGPPHMPNFVFRVTVGEI-TATGEGKSKKLAKHRAAEALLKELKKL 107 (339)
T ss_pred ----c-CChHHHHHHHHHHhCCCcceeee--eccCCccCCCeEEEEEEeee-EEecCCCchhHHHHHHHHHHHHHHhcC
Confidence 1 68999999999999999999987 45799999999999999954 669999999999999999999998765
No 32
>PRK14718 ribonuclease III; Provisional
Probab=98.69 E-value=3.7e-08 Score=111.56 Aligned_cols=73 Identities=8% Similarity=0.070 Sum_probs=62.4
Q ss_pred CCChHHHHHHHHHhcCCceeEeecCCCCCCCCCCCcEEEEEEECCE-EEceeecCCHHHHHHHHHHHHHHHHHhh
Q 002537 836 LMGSVSALKELCMTEGLGVVFQQQPPSSANSVQKDEVYAQVEIDGQ-VLGKGIGSTWDEAKMQVFLLDIQNFLAL 909 (911)
Q Consensus 836 ~~NyIglLNELCqkegl~v~f~~~~~~~sgg~h~~eF~~qVeIgGk-~yg~G~GsTKKEAKqqAAklAl~kl~~~ 909 (911)
..||.++|+||||++++....+.. ..++|+.|.+.|.+.|.|+|+ .+|.|+|+|||+|.|+||+.||.+|.++
T Consensus 150 ~kDyKS~LQE~~Qk~~~~~PeY~l-i~esGPdH~k~F~V~V~v~g~~~~G~G~G~SKKeAEQ~AAk~AL~kL~~~ 223 (467)
T PRK14718 150 GKDAKTLLQEYLQGHKIALPTYTV-VATHGAAHNQQFEVECTVPKLDIKVSGSGASRRAAEQAAAKKALDEVTAV 223 (467)
T ss_pred ccCHHHHHHHHHHhcCCCCCeeEE-eeeecCCCCCeEEEEEEECCeeeEEEEEcCCHHHHHHHHHHHHHHHhccc
Confidence 469999999999999998654443 233688899999999999995 5699999999999999999999998754
No 33
>PF14709 DND1_DSRM: double strand RNA binding domain from DEAD END PROTEIN 1
Probab=98.67 E-value=4.1e-08 Score=88.14 Aligned_cols=69 Identities=25% Similarity=0.207 Sum_probs=58.7
Q ss_pred CChHHHHHHHHHhcCCceeEeecCCCCCCCCCCCcEEEEEEECCEEEc----------eeecCCHHHHHHHHHHHHHHHH
Q 002537 837 MGSVSALKELCMTEGLGVVFQQQPPSSANSVQKDEVYAQVEIDGQVLG----------KGIGSTWDEAKMQVFLLDIQNF 906 (911)
Q Consensus 837 ~NyIglLNELCqkegl~v~f~~~~~~~sgg~h~~eF~~qVeIgGk~yg----------~G~GsTKKEAKqqAAklAl~kl 906 (911)
++++++|+|||+|.+|.-+-+... .+.|+.|.+.|.|+|+|.+..++ .=--.++|+||..||+.||+.|
T Consensus 1 k~a~~~L~elC~k~~W~~P~y~l~-~~~Gp~~~~~F~ykV~i~~~~~~~~~~~~~~~p~~~~~~~k~Ak~~AA~~~L~~L 79 (80)
T PF14709_consen 1 KSAVSLLNELCQKNKWGPPVYELV-SESGPDHRKLFLYKVVIPGLEYPFEGSIECFGPTKPSSTKKEAKESAAQQALQAL 79 (80)
T ss_pred CCHHHHHHHHHHhcCCCCCeEEEE-eccCCCccEEEEEEEEEcCCCCCCcceEEEccCCCcCccHHHHHHHHHHHHHHhc
Confidence 368999999999999998877763 45789999999999999999884 2234789999999999999876
No 34
>COG0571 Rnc dsRNA-specific ribonuclease [Transcription]
Probab=98.65 E-value=6.8e-08 Score=102.23 Aligned_cols=72 Identities=19% Similarity=0.237 Sum_probs=66.0
Q ss_pred CChHHHHHHHHHhcCCceeEeecCCCCCCCCCCCcEEEEEEECCEEEceeecCCHHHHHHHHHHHHHHHHHhh
Q 002537 837 MGSVSALKELCMTEGLGVVFQQQPPSSANSVQKDEVYAQVEIDGQVLGKGIGSTWDEAKMQVFLLDIQNFLAL 909 (911)
Q Consensus 837 ~NyIglLNELCqkegl~v~f~~~~~~~sgg~h~~eF~~qVeIgGk~yg~G~GsTKKEAKqqAAklAl~kl~~~ 909 (911)
.+|=..|+|+||..+....-+.+ ..+.|++|.+.|.+.|.++|+++|+|+|+|||+|.|.||+.||.++...
T Consensus 161 ~D~Kt~LQe~~q~~~~~~p~Y~~-v~~~g~~h~~~F~v~v~v~~~~~g~G~G~skk~AEq~AA~~al~~l~~~ 232 (235)
T COG0571 161 KDPKTRLQELLQAQGLVLPEYRL-VKEEGPAHDKEFTVEVAVGGKELGTGKGRSKKEAEQAAAEQALKKLGVK 232 (235)
T ss_pred cChhHHHHHHHHhcCCCCCeEEE-eeccCCCCCceEEEEEEECCeeEEEecccCHHHHHHHHHHHHHHHhccc
Confidence 68999999999999999988887 3446899999999999999999999999999999999999999998754
No 35
>PRK12372 ribonuclease III; Reviewed
Probab=98.62 E-value=8.4e-08 Score=107.98 Aligned_cols=72 Identities=10% Similarity=0.095 Sum_probs=61.3
Q ss_pred CCChHHHHHHHHHhcCCceeEeecCCCCCCCCCCCcEEEEEEECC-EEEceeecCCHHHHHHHHHHHHHHHHHh
Q 002537 836 LMGSVSALKELCMTEGLGVVFQQQPPSSANSVQKDEVYAQVEIDG-QVLGKGIGSTWDEAKMQVFLLDIQNFLA 908 (911)
Q Consensus 836 ~~NyIglLNELCqkegl~v~f~~~~~~~sgg~h~~eF~~qVeIgG-k~yg~G~GsTKKEAKqqAAklAl~kl~~ 908 (911)
..||.+.|+||||++++....+.. ..++|+.|.+.|.+.|.|+| +.++.|.|.|||+|.|+||+.||++|.+
T Consensus 150 ~~D~KS~LQE~~Q~~~~~~P~Y~l-v~e~Gp~h~~~F~V~V~v~g~~~~g~G~G~SKKeAEQ~AAr~AL~kL~~ 222 (413)
T PRK12372 150 GKDAKTLLQEYLQGHKIALPTYTV-VATHGAAHNQQFEVECTVPKLDVKVSGSGASRRAAEQAAAKKALDEVMA 222 (413)
T ss_pred cCCHHHHHHHHHHhcCCCCCeeEE-eeeecCCCCceEEEEEEECCeEEEEEEEeCCHHHHHHHHHHHHHHHHhc
Confidence 458999999999999988544443 13368889999999999998 5678999999999999999999999974
No 36
>PF14709 DND1_DSRM: double strand RNA binding domain from DEAD END PROTEIN 1
Probab=98.34 E-value=1.1e-06 Score=79.12 Aligned_cols=65 Identities=15% Similarity=0.182 Sum_probs=55.0
Q ss_pred CchHHHHHHHHhcCC-CeEEEEeee--cCCCceEEEEEEECCEEEE----------EeecCCHHHHHHHHHHHHHHHH
Q 002537 706 TPSGVLQDIAMKCGT-KVEFRPALV--ASTELQFSIEAWFAGEKIG----------EGIGRTRREAQRQAAEGSIKHL 770 (911)
Q Consensus 706 n~KT~LQE~~Qk~~~-~~~Y~~v~~--~~Hd~~FtveV~I~Ge~~G----------~G~GkSKKEAEq~AAk~AL~~L 770 (911)
.+++.|+|+|+|++. .+.|++... ++|.+.|+..|.|.+..+. .=--.+||+|+..||+.||..|
T Consensus 2 ~a~~~L~elC~k~~W~~P~y~l~~~~Gp~~~~~F~ykV~i~~~~~~~~~~~~~~~p~~~~~~~k~Ak~~AA~~~L~~L 79 (80)
T PF14709_consen 2 SAVSLLNELCQKNKWGPPVYELVSESGPDHRKLFLYKVVIPGLEYPFEGSIECFGPTKPSSTKKEAKESAAQQALQAL 79 (80)
T ss_pred CHHHHHHHHHHhcCCCCCeEEEEeccCCCccEEEEEEEEEcCCCCCCcceEEEccCCCcCccHHHHHHHHHHHHHHhc
Confidence 478999999999996 589999754 6789999999999998883 1223689999999999999877
No 37
>KOG1817 consensus Ribonuclease [RNA processing and modification]
Probab=97.84 E-value=4.2e-05 Score=86.54 Aligned_cols=67 Identities=16% Similarity=0.369 Sum_probs=56.5
Q ss_pred chHHHHHHHHhcCC----C---eEEEEeee--cCCCceEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHHHhh
Q 002537 707 PSGVLQDIAMKCGT----K---VEFRPALV--ASTELQFSIEAWFAGEKIGEGIGRTRREAQRQAAEGSIKHLANV 773 (911)
Q Consensus 707 ~KT~LQE~~Qk~~~----~---~~Y~~v~~--~~Hd~~FtveV~I~Ge~~G~G~GkSKKEAEq~AAk~AL~~L~~~ 773 (911)
+|+.||.+|-.... . +.|.++.. |.+++.|+|.|+++|+.+|+|+|++.|.|+..||+.||+.+...
T Consensus 429 pkskLqq~cl~~rys~~~epdip~y~V~~~~gpa~~r~y~Vavyf~gkrlat~~G~nik~Ae~rAA~~ALe~~~~d 504 (533)
T KOG1817|consen 429 PKSKLQQCCLTLRYSLGGEPDIPLYKVLGAKGPANDRNYKVAVYFKGKRLATGVGSNIKQAEMRAAMQALENLKMD 504 (533)
T ss_pred cHHHHHHHHHHHhcccCCCCCCceEEEecccCCCCCCceEEEEEECCEEEeeccCchHhHHHHHHHHHHHHHHHhh
Confidence 79999999944322 1 35666654 57899999999999999999999999999999999999999753
No 38
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=97.80 E-value=0.00018 Score=70.26 Aligned_cols=39 Identities=5% Similarity=0.224 Sum_probs=33.8
Q ss_pred EeeCcChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhh
Q 002537 260 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLL 301 (911)
Q Consensus 260 vKLRPgv~eLr~FL~a~~sk~FElyVyTmG~R~YA~~I~rlL 301 (911)
++++|++.+++.+|+ ...+.++|.|+|.+.++..+++.+
T Consensus 71 ~~l~~g~~~ll~~l~---~~g~~~~i~S~~~~~~~~~~l~~~ 109 (188)
T TIGR01489 71 APIDPGFKEFIAFIK---EHGIDFIVISDGNDFFIDPVLEGI 109 (188)
T ss_pred CCCCccHHHHHHHHH---HcCCcEEEEeCCcHHHHHHHHHHc
Confidence 578899999888886 456999999999999999998874
No 39
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=97.76 E-value=0.00014 Score=73.48 Aligned_cols=81 Identities=17% Similarity=0.276 Sum_probs=56.2
Q ss_pred EEeeCcChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccCCCceEeccCC-Ccc----chhhhcc
Q 002537 259 LVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSG-SRK----SLFNVFQ 333 (911)
Q Consensus 259 ~vKLRPgv~eLr~FL~a~~sk~FElyVyTmG~R~YA~~I~rlLDP~g~lFg~~~l~~RIisresg-~~K----sL~~lfp 333 (911)
++++.||+.+++.+|+ .+.+-+.|.|++.+.++...++.+ +...+|+.|++.++. ..| .+..++.
T Consensus 92 ~~~~~~g~~~~L~~L~---~~g~~~~i~Tn~~~~~~~~~l~~~-------~l~~~f~~i~~~~~~~~~KP~~~~~~~~~~ 161 (221)
T TIGR02253 92 YLRVYPGVRDTLMELR---ESGYRLGIITDGLPVKQWEKLERL-------GVRDFFDAVITSEEEGVEKPHPKIFYAALK 161 (221)
T ss_pred hCCCCCCHHHHHHHHH---HCCCEEEEEeCCchHHHHHHHHhC-------ChHHhccEEEEeccCCCCCCCHHHHHHHHH
Confidence 5688999999888886 446889999999999998888774 444556678876432 222 2222222
Q ss_pred CCCCCCcEEEEEcCCc
Q 002537 334 DGTCHPKMALVIDDRL 349 (911)
Q Consensus 334 ~~~~~~~mvVIIDDR~ 349 (911)
.....++-+|+|+|+.
T Consensus 162 ~~~~~~~~~~~igDs~ 177 (221)
T TIGR02253 162 RLGVKPEEAVMVGDRL 177 (221)
T ss_pred HcCCChhhEEEECCCh
Confidence 2225667899999985
No 40
>KOG2777 consensus tRNA-specific adenosine deaminase 1 [RNA processing and modification]
Probab=97.69 E-value=7e-05 Score=87.24 Aligned_cols=66 Identities=21% Similarity=0.347 Sum_probs=57.5
Q ss_pred CCCchHHHHHHHHhcCCCeEEEEeee--cCCCceEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHHHhhh
Q 002537 704 TETPSGVLQDIAMKCGTKVEFRPALV--ASTELQFSIEAWFAGEKIGEGIGRTRREAQRQAAEGSIKHLANVY 774 (911)
Q Consensus 704 ~~n~KT~LQE~~Qk~~~~~~Y~~v~~--~~Hd~~FtveV~I~Ge~~G~G~GkSKKEAEq~AAk~AL~~L~~~~ 774 (911)
..|+.+.|+||++ .+.|..+.. +.|.+.|.+.|.|||+.+..| |+|||+|+++||..||+.|.+..
T Consensus 89 ~~npv~ll~e~~~----~~~~~~~~~~~~~~~~~F~~~~~vdg~~~~~~-~~sKk~ak~~aa~~al~~l~~~~ 156 (542)
T KOG2777|consen 89 GKNPVSLLHELAN----GLFFDFVNESGPQHAPKFVMSVVVDGRWFEGG-GRSKKEAKQEAAMAALQVLFKID 156 (542)
T ss_pred cCCchHHHHHHhc----ccceeeeccCCCCCCceEEEEEEECCEEccCC-CcchHHHHHHHHHHHHHHHHhcc
Confidence 5689999999999 556665554 578999999999999999878 99999999999999999997643
No 41
>KOG2832 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]
Probab=97.68 E-value=0.0001 Score=82.34 Aligned_cols=124 Identities=15% Similarity=0.201 Sum_probs=91.8
Q ss_pred cCCC-CCCceEEEeeCcChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccCCCceEec----cCC
Q 002537 249 INPQ-IRDTSVLVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCV----KSG 323 (911)
Q Consensus 249 I~P~-~r~~~~~vKLRPgv~eLr~FL~a~~sk~FElyVyTmG~R~YA~~I~rlLDP~g~lFg~~~l~~RIisr----esg 323 (911)
++|+ ...|.+-+|.|||+.- ||. .+++.|||.|||--.-.||.-++.-|||. .+|. .|+++- ++|
T Consensus 201 Vhpdws~~tGwRf~kRPgvD~---FL~-~~a~~yEIVi~sse~gmt~~pl~d~lDP~-g~Is-----YkLfr~~t~y~~G 270 (393)
T KOG2832|consen 201 VHPDWSYKTGWRFKKRPGVDY---FLG-HLAKYYEIVVYSSEQGMTVFPLLDALDPK-GYIS-----YKLFRGATKYEEG 270 (393)
T ss_pred eccchhhhcCceeccCchHHH---HHH-hhcccceEEEEecCCccchhhhHhhcCCc-ceEE-----EEEecCcccccCc
Confidence 4454 3357789999999998 998 99999999999999999999999999999 5577 788764 344
Q ss_pred -CccchhhhccCCCCCCcEEEEEcCCcccCCCCCCCCeEEeccccCccCchhhhcccCchHHHHHHHHhhhcc
Q 002537 324 -SRKSLFNVFQDGTCHPKMALVIDDRLKVWDDKDQPRVHVVPAFAPYYAPQAEANNAIPVLCVARNIACNVRG 395 (911)
Q Consensus 324 -~~KsL~~lfp~~~~~~~mvVIIDDR~dVW~~~~~~~v~vV~~Y~pf~~~q~e~~~~~p~L~~a~~vl~~Vh~ 395 (911)
..|+|..|=. +.+-|||||=......-+ +.|-+.++++. ++.++..|......|+-||.
T Consensus 271 ~HvKdls~LNR----dl~kVivVd~d~~~~~l~-P~N~l~l~~W~--------Gn~dDt~L~dL~~FL~~ia~ 330 (393)
T KOG2832|consen 271 HHVKDLSKLNR----DLQKVIVVDFDANSYKLQ-PENMLPLEPWS--------GNDDDTSLFDLLAFLEYIAQ 330 (393)
T ss_pred cchhhhhhhcc----ccceeEEEEccccccccC-cccccccCcCC--------CCcccchhhhHHHHHHHHHH
Confidence 6799998874 789999999666665554 34455677762 22233356556666555543
No 42
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=97.64 E-value=6.4e-05 Score=70.93 Aligned_cols=81 Identities=19% Similarity=0.269 Sum_probs=58.7
Q ss_pred EEeeCcChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccCCCceEeccC-CCcc----chhhhcc
Q 002537 259 LVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKS-GSRK----SLFNVFQ 333 (911)
Q Consensus 259 ~vKLRPgv~eLr~FL~a~~sk~FElyVyTmG~R~YA~~I~rlLDP~g~lFg~~~l~~RIisres-g~~K----sL~~lfp 333 (911)
..++.|++.+++..|+ ++.|.++|+|++.+.+...+++-+ +...+++.|++.++ +..| -+..+..
T Consensus 75 ~~~~~~~~~~~L~~l~---~~~~~~~i~Sn~~~~~~~~~l~~~-------~~~~~f~~i~~~~~~~~~Kp~~~~~~~~~~ 144 (176)
T PF13419_consen 75 KLQPYPGVRELLERLK---AKGIPLVIVSNGSRERIERVLERL-------GLDDYFDEIISSDDVGSRKPDPDAYRRALE 144 (176)
T ss_dssp GEEESTTHHHHHHHHH---HTTSEEEEEESSEHHHHHHHHHHT-------THGGGCSEEEEGGGSSSSTTSHHHHHHHHH
T ss_pred ccchhhhhhhhhhhcc---cccceeEEeecCCccccccccccc-------ccccccccccccchhhhhhhHHHHHHHHHH
Confidence 5688899999666665 578999999999999999999985 44455678888753 2222 2444433
Q ss_pred CCCCCCcEEEEEcCCc
Q 002537 334 DGTCHPKMALVIDDRL 349 (911)
Q Consensus 334 ~~~~~~~mvVIIDDR~ 349 (911)
...+.++-+|+|||+.
T Consensus 145 ~~~~~p~~~~~vgD~~ 160 (176)
T PF13419_consen 145 KLGIPPEEILFVGDSP 160 (176)
T ss_dssp HHTSSGGGEEEEESSH
T ss_pred HcCCCcceEEEEeCCH
Confidence 2236778899999985
No 43
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=97.64 E-value=0.00024 Score=74.53 Aligned_cols=80 Identities=13% Similarity=0.201 Sum_probs=57.6
Q ss_pred EeeCcChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccCCCceEeccCC-Cccc----hhhhccC
Q 002537 260 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSG-SRKS----LFNVFQD 334 (911)
Q Consensus 260 vKLRPgv~eLr~FL~a~~sk~FElyVyTmG~R~YA~~I~rlLDP~g~lFg~~~l~~RIisresg-~~Ks----L~~lfp~ 334 (911)
+++.||+.+++.+|+ ++-|.+.|.|++.+.++..+++. ++...+|+.|+|.++. ..|. +...+..
T Consensus 107 ~~l~pgv~e~L~~L~---~~g~~l~I~Tn~~~~~~~~~l~~-------~gl~~~Fd~iv~~~~~~~~KP~p~~~~~a~~~ 176 (248)
T PLN02770 107 LKPLNGLYKLKKWIE---DRGLKRAAVTNAPRENAELMISL-------LGLSDFFQAVIIGSECEHAKPHPDPYLKALEV 176 (248)
T ss_pred CCcCccHHHHHHHHH---HcCCeEEEEeCCCHHHHHHHHHH-------cCChhhCcEEEecCcCCCCCCChHHHHHHHHH
Confidence 467899999999887 56799999999999999999998 4555566788887542 1111 2222221
Q ss_pred CCCCCcEEEEEcCCc
Q 002537 335 GTCHPKMALVIDDRL 349 (911)
Q Consensus 335 ~~~~~~mvVIIDDR~ 349 (911)
..+.++-+++|+|+.
T Consensus 177 ~~~~~~~~l~vgDs~ 191 (248)
T PLN02770 177 LKVSKDHTFVFEDSV 191 (248)
T ss_pred hCCChhHEEEEcCCH
Confidence 125677889999986
No 44
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=97.56 E-value=0.00019 Score=72.77 Aligned_cols=81 Identities=17% Similarity=0.143 Sum_probs=56.7
Q ss_pred EeeCcChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCC-CCccccccCCCceEeccCC-Cc----cchhhhcc
Q 002537 260 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPE-SNLINTKELLDRIVCVKSG-SR----KSLFNVFQ 333 (911)
Q Consensus 260 vKLRPgv~eLr~FL~a~~sk~FElyVyTmG~R~YA~~I~rlLDP~-g~lFg~~~l~~RIisresg-~~----KsL~~lfp 333 (911)
+++.||+.+++..|+ ++.|.+.|.|++.+.++..+++.++=. +.+| +.|+|.++- .. .-+..++.
T Consensus 86 ~~l~~G~~~~L~~L~---~~g~~~~ivT~~~~~~~~~~l~~~~l~~~~~f------~~i~~~~~~~~~KP~p~~~~~a~~ 156 (220)
T TIGR03351 86 PVALPGAEEAFRSLR---SSGIKVALTTGFDRDTAERLLEKLGWTVGDDV------DAVVCPSDVAAGRPAPDLILRAME 156 (220)
T ss_pred CccCCCHHHHHHHHH---HCCCEEEEEeCCchHHHHHHHHHhhhhhhccC------CEEEcCCcCCCCCCCHHHHHHHHH
Confidence 478899999888886 567999999999999999999986433 1444 578887542 11 22333333
Q ss_pred CCCCC-CcEEEEEcCCc
Q 002537 334 DGTCH-PKMALVIDDRL 349 (911)
Q Consensus 334 ~~~~~-~~mvVIIDDR~ 349 (911)
...+. ++-+|+|+|+.
T Consensus 157 ~~~~~~~~~~~~igD~~ 173 (220)
T TIGR03351 157 LTGVQDVQSVAVAGDTP 173 (220)
T ss_pred HcCCCChhHeEEeCCCH
Confidence 22244 57899999984
No 45
>TIGR01685 MDP-1 magnesium-dependent phosphatase-1. This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.
Probab=97.56 E-value=0.00022 Score=72.66 Aligned_cols=100 Identities=17% Similarity=0.129 Sum_probs=67.5
Q ss_pred EEeeCcChhhHHHHHhhhccccEEEEEEeCC-cHHHHHHHHHhhC--CCCCccccccCCCceEeccCC-CccchhhhccC
Q 002537 259 LVRLRPAWEDLRSYLTARGRKRFEVYVCTMA-ERDYALEMWRLLD--PESNLINTKELLDRIVCVKSG-SRKSLFNVFQD 334 (911)
Q Consensus 259 ~vKLRPgv~eLr~FL~a~~sk~FElyVyTmG-~R~YA~~I~rlLD--P~g~lFg~~~l~~RIisresg-~~KsL~~lfp~ 334 (911)
-++++||+.+++.+|+ ++-+-+.|.|++ .+.|+..+++.++ =.|+.+....+|+.|++-++. ..|....++..
T Consensus 43 ~~~l~pGv~elL~~Lk---~~G~~l~I~Sn~~~~~~~~~~L~~~~l~~~~~~~~~~~~Fd~iv~~~~~~~~kp~~~i~~~ 119 (174)
T TIGR01685 43 EVTLIKEVRDVLQTLK---DAGTYLATASWNDVPEWAYEILGTFEITYAGKTVPMHSLFDDRIEIYKPNKAKQLEMILQK 119 (174)
T ss_pred EEEEcccHHHHHHHHH---HCCCEEEEEeCCCChHHHHHHHHhCCcCCCCCcccHHHhceeeeeccCCchHHHHHHHHHH
Confidence 4678899999888887 577999999988 9999999999977 335444444666677776443 33433222221
Q ss_pred C------CCCCcEEEEEcCCcccCCCCCCCCeE
Q 002537 335 G------TCHPKMALVIDDRLKVWDDKDQPRVH 361 (911)
Q Consensus 335 ~------~~~~~mvVIIDDR~dVW~~~~~~~v~ 361 (911)
. ...++-+++|||+..=........+.
T Consensus 120 ~~~~~~~gl~p~e~l~VgDs~~di~aA~~aGi~ 152 (174)
T TIGR01685 120 VNKVDPSVLKPAQILFFDDRTDNVREVWGYGVT 152 (174)
T ss_pred hhhcccCCCCHHHeEEEcChhHhHHHHHHhCCE
Confidence 0 15678999999997654433333443
No 46
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=97.54 E-value=0.00053 Score=68.73 Aligned_cols=82 Identities=18% Similarity=0.155 Sum_probs=57.9
Q ss_pred EEeeCcChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccCCCceEeccCC-Ccc----chhhhcc
Q 002537 259 LVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSG-SRK----SLFNVFQ 333 (911)
Q Consensus 259 ~vKLRPgv~eLr~FL~a~~sk~FElyVyTmG~R~YA~~I~rlLDP~g~lFg~~~l~~RIisresg-~~K----sL~~lfp 333 (911)
.+++.||+.+++..|+ .+.|.+.|+|++.+.++..+++.+ +...+|+.|+|.++. ..| .+..++.
T Consensus 83 ~~~~~~g~~~~L~~l~---~~g~~~~i~S~~~~~~~~~~l~~~-------~l~~~f~~~~~~~~~~~~Kp~p~~~~~~~~ 152 (213)
T TIGR01449 83 LTSVFPGVEATLGALR---AKGLRLGLVTNKPTPLARPLLELL-------GLAKYFSVLIGGDSLAQRKPHPDPLLLAAE 152 (213)
T ss_pred cCccCCCHHHHHHHHH---HCCCeEEEEeCCCHHHHHHHHHHc-------CcHhhCcEEEecCCCCCCCCChHHHHHHHH
Confidence 4688999999888886 456999999999999999999984 333455678877542 222 2333333
Q ss_pred CCCCCCcEEEEEcCCcc
Q 002537 334 DGTCHPKMALVIDDRLK 350 (911)
Q Consensus 334 ~~~~~~~mvVIIDDR~d 350 (911)
.....++-+++|+|+..
T Consensus 153 ~~~~~~~~~~~igDs~~ 169 (213)
T TIGR01449 153 RLGVAPQQMVYVGDSRV 169 (213)
T ss_pred HcCCChhHeEEeCCCHH
Confidence 22256677999999853
No 47
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=97.50 E-value=0.00056 Score=67.74 Aligned_cols=78 Identities=19% Similarity=0.288 Sum_probs=51.7
Q ss_pred EEeeCcChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccCCCceEeccCC-C----ccc----hh
Q 002537 259 LVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSG-S----RKS----LF 329 (911)
Q Consensus 259 ~vKLRPgv~eLr~FL~a~~sk~FElyVyTmG~R~YA~~I~rlLDP~g~lFg~~~l~~RIisresg-~----~Ks----L~ 329 (911)
.+++.||+.+ +|+ +.. |.++|+|++.+.++..+++.+ +...+|+.|+|.++. . .|. +.
T Consensus 82 ~~~~~~g~~~---~L~-~L~--~~~~i~Tn~~~~~~~~~l~~~-------gl~~~fd~i~~~~~~~~~~~~~KP~p~~~~ 148 (184)
T TIGR01993 82 KLKPDPELRN---LLL-RLP--GRKIIFTNGDRAHARRALNRL-------GIEDCFDGIFCFDTANPDYLLPKPSPQAYE 148 (184)
T ss_pred hCCCCHHHHH---HHH-hCC--CCEEEEeCCCHHHHHHHHHHc-------CcHhhhCeEEEeecccCccCCCCCCHHHHH
Confidence 3567789988 554 333 579999999999999999884 333455678887432 2 132 23
Q ss_pred hhccCCCCCCcEEEEEcCCc
Q 002537 330 NVFQDGTCHPKMALVIDDRL 349 (911)
Q Consensus 330 ~lfp~~~~~~~mvVIIDDR~ 349 (911)
.++......++-+++|||+.
T Consensus 149 ~~~~~~~~~~~~~l~vgD~~ 168 (184)
T TIGR01993 149 KALREAGVDPERAIFFDDSA 168 (184)
T ss_pred HHHHHhCCCccceEEEeCCH
Confidence 33322225677889999985
No 48
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=97.48 E-value=0.0007 Score=65.69 Aligned_cols=79 Identities=19% Similarity=0.246 Sum_probs=51.7
Q ss_pred EeeCcChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccCCCceEecc-CCCcc----chhhhccC
Q 002537 260 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVK-SGSRK----SLFNVFQD 334 (911)
Q Consensus 260 vKLRPgv~eLr~FL~a~~sk~FElyVyTmG~R~YA~~I~rlLDP~g~lFg~~~l~~RIisre-sg~~K----sL~~lfp~ 334 (911)
+++.||+.+++..|+ .+-|.++|+|++.+.+ ..+... ++....|+.|++.+ .+..| .+..++..
T Consensus 84 ~~~~~g~~~~l~~l~---~~g~~~~i~Tn~~~~~-~~~~~~-------~~l~~~f~~i~~~~~~~~~KP~~~~~~~~~~~ 152 (183)
T TIGR01509 84 LKPLPGVEPLLEALR---ARGKKLALLTNSPRDH-AVLVQE-------LGLRDLFDVVIFSGDVGRGKPDPDIYLLALKK 152 (183)
T ss_pred CccCcCHHHHHHHHH---HCCCeEEEEeCCchHH-HHHHHh-------cCCHHHCCEEEEcCCCCCCCCCHHHHHHHHHH
Confidence 688999999666665 4568999999999999 555543 34344556777642 23222 23333332
Q ss_pred CCCCCcEEEEEcCCc
Q 002537 335 GTCHPKMALVIDDRL 349 (911)
Q Consensus 335 ~~~~~~mvVIIDDR~ 349 (911)
....++-+++|||+.
T Consensus 153 ~~~~~~~~~~vgD~~ 167 (183)
T TIGR01509 153 LGLKPEECLFVDDSP 167 (183)
T ss_pred cCCCcceEEEEcCCH
Confidence 225678899999985
No 49
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=97.47 E-value=0.00038 Score=70.10 Aligned_cols=81 Identities=15% Similarity=0.135 Sum_probs=56.9
Q ss_pred EEeeCcChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccCCCceEeccCC-C----ccchhhhcc
Q 002537 259 LVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSG-S----RKSLFNVFQ 333 (911)
Q Consensus 259 ~vKLRPgv~eLr~FL~a~~sk~FElyVyTmG~R~YA~~I~rlLDP~g~lFg~~~l~~RIisresg-~----~KsL~~lfp 333 (911)
.+++.||+.+++.+|+ ++-|.+.|+|++.+.++..+++.+ +..++|+.|++.++. . ..-+..+..
T Consensus 73 ~~~~~~g~~~~L~~L~---~~g~~~~i~Sn~~~~~~~~~l~~~-------~l~~~f~~i~~~~~~~~~KP~~~~~~~~~~ 142 (205)
T TIGR01454 73 EVEVFPGVPELLAELR---ADGVGTAIATGKSGPRARSLLEAL-------GLLPLFDHVIGSDEVPRPKPAPDIVREALR 142 (205)
T ss_pred ccccCCCHHHHHHHHH---HCCCeEEEEeCCchHHHHHHHHHc-------CChhheeeEEecCcCCCCCCChHHHHHHHH
Confidence 3578899999888887 457999999999999999988874 334455678776442 1 122333332
Q ss_pred CCCCCCcEEEEEcCCc
Q 002537 334 DGTCHPKMALVIDDRL 349 (911)
Q Consensus 334 ~~~~~~~mvVIIDDR~ 349 (911)
.....++-+++|+|+.
T Consensus 143 ~~~~~~~~~l~igD~~ 158 (205)
T TIGR01454 143 LLDVPPEDAVMVGDAV 158 (205)
T ss_pred HcCCChhheEEEcCCH
Confidence 2225677899999985
No 50
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=97.42 E-value=0.00055 Score=69.38 Aligned_cols=81 Identities=16% Similarity=0.208 Sum_probs=57.9
Q ss_pred EEeeCcChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccCCCceEeccCC-----Cccchhhhcc
Q 002537 259 LVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSG-----SRKSLFNVFQ 333 (911)
Q Consensus 259 ~vKLRPgv~eLr~FL~a~~sk~FElyVyTmG~R~YA~~I~rlLDP~g~lFg~~~l~~RIisresg-----~~KsL~~lfp 333 (911)
.+++.||+.+++.+|+ ++.+.+.|.|++.+.++..+++.+ +...+|+.|++.++. ....+.+++.
T Consensus 80 ~~~~~~g~~~~l~~L~---~~g~~~~i~S~~~~~~~~~~l~~~-------gl~~~f~~i~~~~~~~~~Kp~p~~~~~~~~ 149 (214)
T PRK13288 80 LVTEYETVYETLKTLK---KQGYKLGIVTTKMRDTVEMGLKLT-------GLDEFFDVVITLDDVEHAKPDPEPVLKALE 149 (214)
T ss_pred hcccCcCHHHHHHHHH---HCCCeEEEEeCCCHHHHHHHHHHc-------CChhceeEEEecCcCCCCCCCcHHHHHHHH
Confidence 3568899999888886 456899999999999999999884 445566788886442 1122333333
Q ss_pred CCCCCCcEEEEEcCCc
Q 002537 334 DGTCHPKMALVIDDRL 349 (911)
Q Consensus 334 ~~~~~~~mvVIIDDR~ 349 (911)
.....++-+++|+|+.
T Consensus 150 ~~~~~~~~~~~iGDs~ 165 (214)
T PRK13288 150 LLGAKPEEALMVGDNH 165 (214)
T ss_pred HcCCCHHHEEEECCCH
Confidence 2224567889999985
No 51
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=97.42 E-value=0.00032 Score=74.99 Aligned_cols=80 Identities=14% Similarity=0.227 Sum_probs=56.4
Q ss_pred EeeCcChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccCCCceEeccCC-Cccc----hhhhccC
Q 002537 260 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSG-SRKS----LFNVFQD 334 (911)
Q Consensus 260 vKLRPgv~eLr~FL~a~~sk~FElyVyTmG~R~YA~~I~rlLDP~g~lFg~~~l~~RIisresg-~~Ks----L~~lfp~ 334 (911)
+++.||+.+++..|+ +.-|-+.|.|++.+.++..+++.+ +...+|+.|++.++. ..|. +..++..
T Consensus 108 ~~l~pg~~e~L~~L~---~~g~~l~I~Tn~~~~~~~~~l~~~-------gl~~~Fd~ii~~~d~~~~KP~Pe~~~~a~~~ 177 (260)
T PLN03243 108 YRLRPGSREFVQALK---KHEIPIAVASTRPRRYLERAIEAV-------GMEGFFSVVLAAEDVYRGKPDPEMFMYAAER 177 (260)
T ss_pred cccCCCHHHHHHHHH---HCCCEEEEEeCcCHHHHHHHHHHc-------CCHhhCcEEEecccCCCCCCCHHHHHHHHHH
Confidence 577899999888886 567999999999999999999984 444566788887543 1111 1112211
Q ss_pred CCCCCcEEEEEcCCc
Q 002537 335 GTCHPKMALVIDDRL 349 (911)
Q Consensus 335 ~~~~~~mvVIIDDR~ 349 (911)
....++-+|+|+|+.
T Consensus 178 l~~~p~~~l~IgDs~ 192 (260)
T PLN03243 178 LGFIPERCIVFGNSN 192 (260)
T ss_pred hCCChHHeEEEcCCH
Confidence 125678899999984
No 52
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=97.38 E-value=0.0012 Score=66.46 Aligned_cols=79 Identities=15% Similarity=0.028 Sum_probs=55.9
Q ss_pred eeCcChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccCCCceEeccCCCcc----chhhhccCCC
Q 002537 261 RLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSGSRK----SLFNVFQDGT 336 (911)
Q Consensus 261 KLRPgv~eLr~FL~a~~sk~FElyVyTmG~R~YA~~I~rlLDP~g~lFg~~~l~~RIisresg~~K----sL~~lfp~~~ 336 (911)
+..|+..+++..|+ .+-+.+.|.|++.+.++..+++. ++...+|+.|++.++...| .+..++....
T Consensus 106 ~~~~~~~~~L~~l~---~~g~~~~i~T~~~~~~~~~~l~~-------~gl~~~f~~~~~~~~~~~KP~p~~~~~~~~~~~ 175 (197)
T TIGR01548 106 ETLLTPKGLLRELH---RAPKGMAVVTGRPRKDAAKFLTT-------HGLEILFPVQIWMEDCPPKPNPEPLILAAKALG 175 (197)
T ss_pred ccccCHHHHHHHHH---HcCCcEEEECCCCHHHHHHHHHH-------cCchhhCCEEEeecCCCCCcCHHHHHHHHHHhC
Confidence 45567789888886 45689999999999999999988 5555666788887553112 1222222223
Q ss_pred CCCcEEEEEcCCc
Q 002537 337 CHPKMALVIDDRL 349 (911)
Q Consensus 337 ~~~~mvVIIDDR~ 349 (911)
++++-+++|+|+.
T Consensus 176 ~~~~~~i~vGD~~ 188 (197)
T TIGR01548 176 VEACHAAMVGDTV 188 (197)
T ss_pred cCcccEEEEeCCH
Confidence 6677899999985
No 53
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=97.37 E-value=0.0011 Score=64.58 Aligned_cols=46 Identities=17% Similarity=0.261 Sum_probs=36.4
Q ss_pred EeeCcChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccc
Q 002537 260 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLIN 309 (911)
Q Consensus 260 vKLRPgv~eLr~FL~a~~sk~FElyVyTmG~R~YA~~I~rlLDP~g~lFg 309 (911)
++++|++.+++..|+ +.-+.++|.|.|.+.|+..+++.+.=+ .+|+
T Consensus 72 ~~~~~g~~~~l~~l~---~~g~~~~ivS~~~~~~i~~~~~~~g~~-~~~~ 117 (177)
T TIGR01488 72 VALRPGARELISWLK---ERGIDTVIVSGGFDFFVEPVAEKLGID-DVFA 117 (177)
T ss_pred CCcCcCHHHHHHHHH---HCCCEEEEECCCcHHHHHHHHHHcCCc-hhee
Confidence 346899999888886 456899999999999999999986433 3444
No 54
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=97.34 E-value=0.0012 Score=74.78 Aligned_cols=81 Identities=15% Similarity=0.158 Sum_probs=59.0
Q ss_pred EeeCcChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccCCCceEeccCC-Cccc----hhhhccC
Q 002537 260 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSG-SRKS----LFNVFQD 334 (911)
Q Consensus 260 vKLRPgv~eLr~FL~a~~sk~FElyVyTmG~R~YA~~I~rlLDP~g~lFg~~~l~~RIisresg-~~Ks----L~~lfp~ 334 (911)
+.+.||+.+++.+|+ ..-+.+.|.|++.+.|+..+++. ++...+|+.|++.++. ..|- +......
T Consensus 215 ~~l~pGa~ElL~~Lk---~~GiklaIaSn~~~~~~~~~L~~-------lgL~~yFd~Iv~sddv~~~KP~Peifl~A~~~ 284 (381)
T PLN02575 215 YRLRTGSQEFVNVLM---NYKIPMALVSTRPRKTLENAIGS-------IGIRGFFSVIVAAEDVYRGKPDPEMFIYAAQL 284 (381)
T ss_pred CCcCcCHHHHHHHHH---HCCCeEEEEeCCCHHHHHHHHHH-------cCCHHHceEEEecCcCCCCCCCHHHHHHHHHH
Confidence 456799999999887 56799999999999999999998 5666677899998653 1121 1222211
Q ss_pred CCCCCcEEEEEcCCcc
Q 002537 335 GTCHPKMALVIDDRLK 350 (911)
Q Consensus 335 ~~~~~~mvVIIDDR~d 350 (911)
....++-+|+|+|+..
T Consensus 285 lgl~Peecl~IGDS~~ 300 (381)
T PLN02575 285 LNFIPERCIVFGNSNQ 300 (381)
T ss_pred cCCCcccEEEEcCCHH
Confidence 1256788999999753
No 55
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=97.28 E-value=0.0014 Score=67.00 Aligned_cols=84 Identities=7% Similarity=0.123 Sum_probs=61.3
Q ss_pred EeeCcChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccCCCceEeccCC-----CccchhhhccC
Q 002537 260 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSG-----SRKSLFNVFQD 334 (911)
Q Consensus 260 vKLRPgv~eLr~FL~a~~sk~FElyVyTmG~R~YA~~I~rlLDP~g~lFg~~~l~~RIisresg-----~~KsL~~lfp~ 334 (911)
.++.||+.+++.+|+ ++-|.++|.|++.+.++..+++. ++...+|+.|++.+.. +...+..++..
T Consensus 91 ~~~~~g~~~~l~~l~---~~g~~~~i~S~~~~~~~~~~l~~-------~~l~~~f~~~~~~~~~~~~Kp~~~~~~~~~~~ 160 (222)
T PRK10826 91 RPLLPGVREALALCK---AQGLKIGLASASPLHMLEAVLTM-------FDLRDYFDALASAEKLPYSKPHPEVYLNCAAK 160 (222)
T ss_pred CCCCCCHHHHHHHHH---HCCCeEEEEeCCcHHHHHHHHHh-------CcchhcccEEEEcccCCCCCCCHHHHHHHHHH
Confidence 467799999888886 56799999999999999999998 4455667788887532 12234444433
Q ss_pred CCCCCcEEEEEcCCcccCC
Q 002537 335 GTCHPKMALVIDDRLKVWD 353 (911)
Q Consensus 335 ~~~~~~mvVIIDDR~dVW~ 353 (911)
....++-+++|+|+..=..
T Consensus 161 ~~~~~~~~~~igDs~~Di~ 179 (222)
T PRK10826 161 LGVDPLTCVALEDSFNGMI 179 (222)
T ss_pred cCCCHHHeEEEcCChhhHH
Confidence 3356778999999975443
No 56
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=97.27 E-value=0.00092 Score=72.04 Aligned_cols=80 Identities=14% Similarity=0.192 Sum_probs=54.6
Q ss_pred EeeCcChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccCCCceEeccCC--CccchhhhccCCCC
Q 002537 260 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSG--SRKSLFNVFQDGTC 337 (911)
Q Consensus 260 vKLRPgv~eLr~FL~a~~sk~FElyVyTmG~R~YA~~I~rlLDP~g~lFg~~~l~~RIisresg--~~KsL~~lfp~~~~ 337 (911)
+++-||+.+++.+|+ .+.+.+.|.|++.+.++..+++.++ ..+.|+.|++.+.. ....+..++.....
T Consensus 141 ~~l~pg~~e~L~~L~---~~gi~laIvSn~~~~~~~~~L~~~g-------l~~~F~~vi~~~~~~~k~~~~~~~l~~~~~ 210 (273)
T PRK13225 141 LQLFPGVADLLAQLR---SRSLCLGILSSNSRQNIEAFLQRQG-------LRSLFSVVQAGTPILSKRRALSQLVAREGW 210 (273)
T ss_pred CCcCCCHHHHHHHHH---HCCCeEEEEeCCCHHHHHHHHHHcC-------ChhheEEEEecCCCCCCHHHHHHHHHHhCc
Confidence 467799999888887 5678999999999999999998854 33444567665432 11222222221114
Q ss_pred CCcEEEEEcCCc
Q 002537 338 HPKMALVIDDRL 349 (911)
Q Consensus 338 ~~~mvVIIDDR~ 349 (911)
.++-+++|+|+.
T Consensus 211 ~p~~~l~IGDs~ 222 (273)
T PRK13225 211 QPAAVMYVGDET 222 (273)
T ss_pred ChhHEEEECCCH
Confidence 567799999984
No 57
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=97.25 E-value=0.00069 Score=72.48 Aligned_cols=81 Identities=16% Similarity=0.242 Sum_probs=56.0
Q ss_pred EEeeCcChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccCCCceEeccCC-Ccc----chhhhcc
Q 002537 259 LVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSG-SRK----SLFNVFQ 333 (911)
Q Consensus 259 ~vKLRPgv~eLr~FL~a~~sk~FElyVyTmG~R~YA~~I~rlLDP~g~lFg~~~l~~RIisresg-~~K----sL~~lfp 333 (911)
.+++.||+.++++.|+ .+-|.+.|.|++.+.++..+++.++ ....|+.|+|.++. ..| .+..++.
T Consensus 99 ~~~~~~g~~e~L~~Lk---~~g~~l~ivTn~~~~~~~~~l~~~~-------i~~~f~~i~~~d~~~~~Kp~p~~~~~~~~ 168 (272)
T PRK13223 99 LTVVYPGVRDTLKWLK---KQGVEMALITNKPERFVAPLLDQMK-------IGRYFRWIIGGDTLPQKKPDPAALLFVMK 168 (272)
T ss_pred CCccCCCHHHHHHHHH---HCCCeEEEEECCcHHHHHHHHHHcC-------cHhhCeEEEecCCCCCCCCCcHHHHHHHH
Confidence 3578899999888886 4568999999999999998888743 23445578876432 111 1333333
Q ss_pred CCCCCCcEEEEEcCCc
Q 002537 334 DGTCHPKMALVIDDRL 349 (911)
Q Consensus 334 ~~~~~~~mvVIIDDR~ 349 (911)
.....++-+++|||+.
T Consensus 169 ~~g~~~~~~l~IGD~~ 184 (272)
T PRK13223 169 MAGVPPSQSLFVGDSR 184 (272)
T ss_pred HhCCChhHEEEECCCH
Confidence 2225678899999984
No 58
>COG5190 FCP1 TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=97.23 E-value=0.00051 Score=77.90 Aligned_cols=96 Identities=20% Similarity=0.319 Sum_probs=79.0
Q ss_pred ceEEEeeCcChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccCCCceE---ec-cCC-Cccchhh
Q 002537 256 TSVLVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIV---CV-KSG-SRKSLFN 330 (911)
Q Consensus 256 ~~~~vKLRPgv~eLr~FL~a~~sk~FElyVyTmG~R~YA~~I~rlLDP~g~lFg~~~l~~RIi---sr-esg-~~KsL~~ 330 (911)
..+||.-||++.. ||. .+++.|++|++|...+.||+.|+++||+.+ .|+ +|++ |+ ..| ..|+|..
T Consensus 247 ~~~~v~kRp~l~~---fl~-~ls~~~~l~~ft~s~~~y~~~v~d~l~~~k-~~~-----~~lfr~sc~~~~G~~ikDis~ 316 (390)
T COG5190 247 HLVYVSKRPELDY---FLG-KLSKIHELVYFTASVKRYADPVLDILDSDK-VFS-----HRLFRESCVSYLGVYIKDISK 316 (390)
T ss_pred eEEEEcCChHHHH---HHh-hhhhhEEEEEEecchhhhcchHHHhccccc-eee-----hhhhcccceeccCchhhhHHh
Confidence 6799999999998 887 889999999999999999999999999999 666 4443 33 344 5678888
Q ss_pred hccCCCCCCcEEEEEcCCcccCCCCCCCCeEEeccc
Q 002537 331 VFQDGTCHPKMALVIDDRLKVWDDKDQPRVHVVPAF 366 (911)
Q Consensus 331 lfp~~~~~~~mvVIIDDR~dVW~~~~~~~v~vV~~Y 366 (911)
+.. +-.-++|||++.--|..+.+ +-++++.+
T Consensus 317 i~r----~l~~viiId~~p~SY~~~p~-~~i~i~~W 347 (390)
T COG5190 317 IGR----SLDKVIIIDNSPASYEFHPE-NAIPIEKW 347 (390)
T ss_pred hcc----CCCceEEeeCChhhhhhCcc-ceeccCcc
Confidence 774 56789999999999988743 44568877
No 59
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=97.23 E-value=0.002 Score=66.73 Aligned_cols=81 Identities=14% Similarity=-0.001 Sum_probs=55.9
Q ss_pred EEeeCcChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccCCCceEeccCC-Ccc----chhhhcc
Q 002537 259 LVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSG-SRK----SLFNVFQ 333 (911)
Q Consensus 259 ~vKLRPgv~eLr~FL~a~~sk~FElyVyTmG~R~YA~~I~rlLDP~g~lFg~~~l~~RIisresg-~~K----sL~~lfp 333 (911)
.+++.||+.++++.|+ +.-+-+.|.|++.+.++..+++.+ +....|+.|++.++. ..| -+..+..
T Consensus 93 ~~~~~pg~~~~L~~L~---~~g~~l~i~Tn~~~~~~~~~l~~~-------~l~~~f~~i~~~~~~~~~KP~p~~~~~~~~ 162 (229)
T PRK13226 93 QSQLFDGVEGMLQRLE---CAGCVWGIVTNKPEYLARLILPQL-------GWEQRCAVLIGGDTLAERKPHPLPLLVAAE 162 (229)
T ss_pred cCeeCCCHHHHHHHHH---HCCCeEEEECCCCHHHHHHHHHHc-------CchhcccEEEecCcCCCCCCCHHHHHHHHH
Confidence 4678999999888886 456899999999999999888874 333445667776432 111 1233332
Q ss_pred CCCCCCcEEEEEcCCc
Q 002537 334 DGTCHPKMALVIDDRL 349 (911)
Q Consensus 334 ~~~~~~~mvVIIDDR~ 349 (911)
.....++-+++|+|+.
T Consensus 163 ~l~~~p~~~l~IGDs~ 178 (229)
T PRK13226 163 RIGVAPTDCVYVGDDE 178 (229)
T ss_pred HhCCChhhEEEeCCCH
Confidence 2225678899999985
No 60
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=97.22 E-value=0.00074 Score=60.56 Aligned_cols=41 Identities=22% Similarity=0.238 Sum_probs=32.7
Q ss_pred EEeeCcChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhC
Q 002537 259 LVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLD 302 (911)
Q Consensus 259 ~vKLRPgv~eLr~FL~a~~sk~FElyVyTmG~R~YA~~I~rlLD 302 (911)
..+++|++.++++.|+ ..-+.++|+|++.+.++..+++.+.
T Consensus 22 ~~~~~~~~~~~l~~l~---~~g~~i~ivS~~~~~~~~~~~~~~~ 62 (139)
T cd01427 22 ELELYPGVKEALKELK---EKGIKLALATNKSRREVLELLEELG 62 (139)
T ss_pred cCCcCcCHHHHHHHHH---HCCCeEEEEeCchHHHHHHHHHHcC
Confidence 3456789999666665 3458999999999999999998853
No 61
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=97.21 E-value=0.0013 Score=63.06 Aligned_cols=75 Identities=13% Similarity=0.069 Sum_probs=51.0
Q ss_pred eCcChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccCCCceEeccCCCcc----chhhhccCCCC
Q 002537 262 LRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSGSRK----SLFNVFQDGTC 337 (911)
Q Consensus 262 LRPgv~eLr~FL~a~~sk~FElyVyTmG~R~YA~~I~rlLDP~g~lFg~~~l~~RIisresg~~K----sL~~lfp~~~~ 337 (911)
..||+.+++.+|+ ++-+.++|.|++.+.++..+++.+ -..+| +.|++.++...| .+..++....+
T Consensus 65 ~~~g~~e~l~~L~---~~g~~~~i~T~~~~~~~~~~~~~~--l~~~f------~~i~~~~~~~~Kp~~~~~~~~~~~~~~ 133 (154)
T TIGR01549 65 YIRGAADLLKRLK---EAGIKLGIISNGSLRAQKLLLRKH--LGDYF------DLILGSDEFGAKPEPEIFLAALESLGL 133 (154)
T ss_pred eccCHHHHHHHHH---HCcCeEEEEeCCchHHHHHHHHHH--HHhcC------cEEEecCCCCCCcCHHHHHHHHHHcCC
Confidence 3489999888886 456899999999999999999984 22334 578876532122 23333322225
Q ss_pred CCcEEEEEcCC
Q 002537 338 HPKMALVIDDR 348 (911)
Q Consensus 338 ~~~mvVIIDDR 348 (911)
.+ -+++|+|+
T Consensus 134 ~~-~~l~iGDs 143 (154)
T TIGR01549 134 PP-EVLHVGDN 143 (154)
T ss_pred CC-CEEEEeCC
Confidence 55 68889997
No 62
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=97.21 E-value=0.0013 Score=66.75 Aligned_cols=46 Identities=20% Similarity=0.149 Sum_probs=36.9
Q ss_pred EeeCcChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccc
Q 002537 260 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLIN 309 (911)
Q Consensus 260 vKLRPgv~eLr~FL~a~~sk~FElyVyTmG~R~YA~~I~rlLDP~g~lFg 309 (911)
++++||+.+++..|+ .+-+.++|.|+|.+.++..+++.+.=+. +|+
T Consensus 84 ~~~~~g~~~~l~~l~---~~g~~~~IvS~~~~~~~~~~l~~~~i~~-~~~ 129 (219)
T TIGR00338 84 LPLTEGAEELVKTLK---EKGYKVAVISGGFDLFAEHVKDKLGLDA-AFA 129 (219)
T ss_pred CCcCCCHHHHHHHHH---HCCCEEEEECCCcHHHHHHHHHHcCCCc-eEe
Confidence 468999999777776 4579999999999999999999865432 554
No 63
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=97.21 E-value=0.0021 Score=64.87 Aligned_cols=81 Identities=16% Similarity=0.181 Sum_probs=55.7
Q ss_pred EEeeCcChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccCCCceEeccCC-Ccc----chhhhcc
Q 002537 259 LVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSG-SRK----SLFNVFQ 333 (911)
Q Consensus 259 ~vKLRPgv~eLr~FL~a~~sk~FElyVyTmG~R~YA~~I~rlLDP~g~lFg~~~l~~RIisresg-~~K----sL~~lfp 333 (911)
.++++||+.+++..|+ ...+.+.|+|++.+.++..+++.++= ...++.+++.++. ..| .+..++.
T Consensus 91 ~~~~~~g~~~~l~~l~---~~g~~~~i~S~~~~~~~~~~l~~~~l-------~~~f~~~~~~~~~~~~kp~~~~~~~~~~ 160 (226)
T PRK13222 91 GSRLYPGVKETLAALK---AAGYPLAVVTNKPTPFVAPLLEALGI-------ADYFSVVIGGDSLPNKKPDPAPLLLACE 160 (226)
T ss_pred cCccCCCHHHHHHHHH---HCCCeEEEEeCCCHHHHHHHHHHcCC-------ccCccEEEcCCCCCCCCcChHHHHHHHH
Confidence 3578899999777776 45799999999999999999988642 2344577776432 122 1233322
Q ss_pred CCCCCCcEEEEEcCCc
Q 002537 334 DGTCHPKMALVIDDRL 349 (911)
Q Consensus 334 ~~~~~~~mvVIIDDR~ 349 (911)
.....++-+++|+|+.
T Consensus 161 ~~~~~~~~~i~igD~~ 176 (226)
T PRK13222 161 KLGLDPEEMLFVGDSR 176 (226)
T ss_pred HcCCChhheEEECCCH
Confidence 2225678899999984
No 64
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=97.21 E-value=0.0028 Score=62.71 Aligned_cols=81 Identities=16% Similarity=0.192 Sum_probs=54.1
Q ss_pred EeeCcChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccCCCceEeccCCC------------cc-
Q 002537 260 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSGS------------RK- 326 (911)
Q Consensus 260 vKLRPgv~eLr~FL~a~~sk~FElyVyTmG~R~YA~~I~rlLDP~g~lFg~~~l~~RIisresg~------------~K- 326 (911)
++++||+.+++.+|+ ++-+.++|.|+|.+.++..+++.+.-+ .+|. ..+++.+.+. .|
T Consensus 79 ~~~~~g~~e~l~~l~---~~g~~~~IvS~~~~~~~~~~l~~~g~~-~~~~-----~~~~~~~~g~~~p~~~~~~~~~~k~ 149 (201)
T TIGR01491 79 ISLRDYAEELVRWLK---EKGLKTAIVSGGIMCLAKKVAEKLNPD-YVYS-----NELVFDEKGFIQPDGIVRVTFDNKG 149 (201)
T ss_pred CCCCccHHHHHHHHH---HCCCEEEEEeCCcHHHHHHHHHHhCCC-eEEE-----EEEEEcCCCeEecceeeEEccccHH
Confidence 468999999888887 567999999999999999999987643 3555 4444432221 11
Q ss_pred -chhhhccCCCCCCcEEEEEcCCc
Q 002537 327 -SLFNVFQDGTCHPKMALVIDDRL 349 (911)
Q Consensus 327 -sL~~lfp~~~~~~~mvVIIDDR~ 349 (911)
.+.++.......++-+++|+|+.
T Consensus 150 ~~~~~~~~~~~~~~~~~i~iGDs~ 173 (201)
T TIGR01491 150 EAVERLKRELNPSLTETVAVGDSK 173 (201)
T ss_pred HHHHHHHHHhCCCHHHEEEEcCCH
Confidence 23333221123456688888884
No 65
>KOG3792 consensus Transcription factor NFAT, subunit NF90 [General function prediction only]
Probab=97.18 E-value=0.00032 Score=83.26 Aligned_cols=175 Identities=14% Similarity=0.091 Sum_probs=102.4
Q ss_pred CeEEE------Eeee--cCCCceEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHHHhhhcccccCCCCCCCCCCCCc
Q 002537 721 KVEFR------PALV--ASTELQFSIEAWFAGEKIGEGIGRTRREAQRQAAEGSIKHLANVYMLRVKSDSGSGHGDGSRF 792 (911)
Q Consensus 721 ~~~Y~------~v~~--~~Hd~~FtveV~I~Ge~~G~G~GkSKKEAEq~AAk~AL~~L~~~~~~~~~p~~~~~~~D~s~~ 792 (911)
.+.|+ ++.. |.|.++|+++|.+||..+ +..|.|||.|+..||..-|+...-...+. +.-...-.|+-..
T Consensus 385 rLQYk~kv~p~Lvv~t~P~~~~~~t~e~r~~~~~~-~a~gps~~~~~wh~~~k~lq~~~~p~ga~--~r~~~~ge~~a~~ 461 (816)
T KOG3792|consen 385 RLQYKQKVDPDLVVDTKPSHRPRRTMEVRVNGLPA-EAEGPSKKTAKWHAARKRLQNEGRPTGAA--QRFGRMGEDPASM 461 (816)
T ss_pred cceeccccCCCceeccCCcccchhhhhhhhcCCcc-ccCCcccccchHHHHHHHhhccCCCcccc--ccccccCCCcccC
Confidence 46777 5543 789999999999999998 88899999999999998887763100000 0000000000000
Q ss_pred CCccCccccc----ccccCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCChHHHHHHHHHhcCCceeEeecCCCCCCCCC
Q 002537 793 SNANENCFMG----EINSFGGQPLAKDESLSSEPSKLVDPRLEGSKKLMGSVSALKELCMTEGLGVVFQQQPPSSANSVQ 868 (911)
Q Consensus 793 ~~~~eN~~~~----d~ns~~~~~~~~~~~stSe~s~~~~~~~~~s~~~~NyIglLNELCqkegl~v~f~~~~~~~sgg~h 868 (911)
+..+..-+-. .+|+-.+.-.+.++ +-+-.+.+.+++ ...-+|++..|||= ..|+.+...+.+ .++.|
T Consensus 462 p~~~~r~~as~ddr~a~~~~a~~~Pt~~--~l~nVqr~vs~~--~~alK~vsd~L~Ek--~rg~k~El~set---~~gs~ 532 (816)
T KOG3792|consen 462 PEPKGRRPASVDDRHANEKHAGIYPTEE--ELENVQRQVSHL--ERALKLVSDELAEK--RRGDKYELPSET---GTGSH 532 (816)
T ss_pred CCCCCcccCCCcchhhhccccccCccHH--HHHHHHHhhhHH--HHhhcchhHHHhhh--ccccceeccccc---CCCCC
Confidence 0000000000 00000000000000 000000001111 22467999999996 556666555542 34889
Q ss_pred CCcEEEEEEECCEEEceeecCCHHHHHHHHHHHHHHHHHh
Q 002537 869 KDEVYAQVEIDGQVLGKGIGSTWDEAKMQVFLLDIQNFLA 908 (911)
Q Consensus 869 ~~eF~~qVeIgGk~yg~G~GsTKKEAKqqAAklAl~kl~~ 908 (911)
.+.|.+-|+++|+.+ +|.|.++|-||..||..|+.+++-
T Consensus 533 ~~R~v~gV~rvG~~a-kG~~~~gd~a~~~a~Lca~~pt~~ 571 (816)
T KOG3792|consen 533 DKRFVKGVMRVGILA-KGLLLNGDRAVELALLCAEKPTSG 571 (816)
T ss_pred Cceeeeeeeeeehhh-ccccccchHHHHHHHHhccCcccc
Confidence 999999999999977 999999999999999888876654
No 66
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=97.15 E-value=0.0011 Score=66.44 Aligned_cols=80 Identities=8% Similarity=0.085 Sum_probs=53.7
Q ss_pred EeeCcChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccCCCceEeccC-CCccc----hhhhccC
Q 002537 260 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKS-GSRKS----LFNVFQD 334 (911)
Q Consensus 260 vKLRPgv~eLr~FL~a~~sk~FElyVyTmG~R~YA~~I~rlLDP~g~lFg~~~l~~RIisres-g~~Ks----L~~lfp~ 334 (911)
+++.|++.+++..|+ .+-|.++|.|||.+.++..+++.+ +...+|+.|++.++ +..|- +..++..
T Consensus 91 ~~~~~~~~~~L~~L~---~~g~~~~i~Sn~~~~~~~~~l~~~-------gl~~~fd~i~~s~~~~~~KP~~~~~~~~~~~ 160 (198)
T TIGR01428 91 LPPHPDVPAGLRALK---ERGYRLAILSNGSPAMLKSLVKHA-------GLDDPFDAVLSADAVRAYKPAPQVYQLALEA 160 (198)
T ss_pred CCCCCCHHHHHHHHH---HCCCeEEEEeCCCHHHHHHHHHHC-------CChhhhheeEehhhcCCCCCCHHHHHHHHHH
Confidence 357799999666665 345999999999999999998874 33455668887643 22221 1222211
Q ss_pred CCCCCcEEEEEcCCc
Q 002537 335 GTCHPKMALVIDDRL 349 (911)
Q Consensus 335 ~~~~~~mvVIIDDR~ 349 (911)
....++-+++|+|+.
T Consensus 161 ~~~~p~~~~~vgD~~ 175 (198)
T TIGR01428 161 LGVPPDEVLFVASNP 175 (198)
T ss_pred hCCChhhEEEEeCCH
Confidence 124677889999986
No 67
>PLN02954 phosphoserine phosphatase
Probab=97.15 E-value=0.0013 Score=66.87 Aligned_cols=47 Identities=21% Similarity=0.285 Sum_probs=38.2
Q ss_pred EeeCcChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCC-Cccc
Q 002537 260 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPES-NLIN 309 (911)
Q Consensus 260 vKLRPgv~eLr~FL~a~~sk~FElyVyTmG~R~YA~~I~rlLDP~g-~lFg 309 (911)
.+++||+.+++.+|+ ...+.++|.|.|.+.++..+++.+.=+. .+|.
T Consensus 83 ~~l~pg~~e~l~~l~---~~g~~~~IvS~~~~~~i~~~l~~~gi~~~~~~~ 130 (224)
T PLN02954 83 PRLSPGIPELVKKLR---ARGTDVYLVSGGFRQMIAPVAAILGIPPENIFA 130 (224)
T ss_pred CCCCccHHHHHHHHH---HCCCEEEEECCCcHHHHHHHHHHhCCChhhEEE
Confidence 357899999999997 4678999999999999999999865332 3554
No 68
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=97.12 E-value=0.002 Score=64.53 Aligned_cols=79 Identities=19% Similarity=0.212 Sum_probs=51.7
Q ss_pred EeeCcChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccCCCceEeccC-CCccc----hhhhccC
Q 002537 260 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKS-GSRKS----LFNVFQD 334 (911)
Q Consensus 260 vKLRPgv~eLr~FL~a~~sk~FElyVyTmG~R~YA~~I~rlLDP~g~lFg~~~l~~RIisres-g~~Ks----L~~lfp~ 334 (911)
+++-||+.+++.+|+ .+.|.+.|.||+.+.+ ..+++. ++...+|+.|++.++ +..|. +..++..
T Consensus 104 ~~~~~g~~~~l~~L~---~~g~~~~i~Sn~~~~~-~~~l~~-------~~l~~~fd~i~~s~~~~~~KP~~~~~~~~~~~ 172 (203)
T TIGR02252 104 WQVYPDAIKLLKDLR---ERGLILGVISNFDSRL-RGLLEA-------LGLLEYFDFVVTSYEVGAEKPDPKIFQEALER 172 (203)
T ss_pred ceeCcCHHHHHHHHH---HCCCEEEEEeCCchhH-HHHHHH-------CCcHHhcceEEeecccCCCCCCHHHHHHHHHH
Confidence 378899999888886 4568999999998865 555554 344455667776532 32221 2223222
Q ss_pred CCCCCcEEEEEcCCc
Q 002537 335 GTCHPKMALVIDDRL 349 (911)
Q Consensus 335 ~~~~~~mvVIIDDR~ 349 (911)
....++-+|+|+|+.
T Consensus 173 ~~~~~~~~~~IgD~~ 187 (203)
T TIGR02252 173 AGISPEEALHIGDSL 187 (203)
T ss_pred cCCChhHEEEECCCc
Confidence 235778899999984
No 69
>PRK11587 putative phosphatase; Provisional
Probab=97.11 E-value=0.0014 Score=67.11 Aligned_cols=80 Identities=13% Similarity=-0.011 Sum_probs=51.9
Q ss_pred EEeeCcChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccCCCceEeccCC-C----ccchhhhcc
Q 002537 259 LVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSG-S----RKSLFNVFQ 333 (911)
Q Consensus 259 ~vKLRPgv~eLr~FL~a~~sk~FElyVyTmG~R~YA~~I~rlLDP~g~lFg~~~l~~RIisresg-~----~KsL~~lfp 333 (911)
.+++.||+.+++.+|+ .+.|.+.|.|++.+.++..+.+.+.= .+| .-|+|.++. . ...+.....
T Consensus 81 ~~~~~pg~~e~L~~L~---~~g~~~~ivTn~~~~~~~~~l~~~~l--~~~------~~i~~~~~~~~~KP~p~~~~~~~~ 149 (218)
T PRK11587 81 GITALPGAIALLNHLN---KLGIPWAIVTSGSVPVASARHKAAGL--PAP------EVFVTAERVKRGKPEPDAYLLGAQ 149 (218)
T ss_pred CceeCcCHHHHHHHHH---HcCCcEEEEcCCCchHHHHHHHhcCC--CCc------cEEEEHHHhcCCCCCcHHHHHHHH
Confidence 4578999999888886 56799999999999988777665321 122 356776432 1 111222222
Q ss_pred CCCCCCcEEEEEcCCc
Q 002537 334 DGTCHPKMALVIDDRL 349 (911)
Q Consensus 334 ~~~~~~~mvVIIDDR~ 349 (911)
.....++-+++|+|+.
T Consensus 150 ~~g~~p~~~l~igDs~ 165 (218)
T PRK11587 150 LLGLAPQECVVVEDAP 165 (218)
T ss_pred HcCCCcccEEEEecch
Confidence 1225678899999985
No 70
>PLN02940 riboflavin kinase
Probab=97.11 E-value=0.00037 Score=78.33 Aligned_cols=80 Identities=19% Similarity=0.148 Sum_probs=56.6
Q ss_pred EeeCcChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHH-hhCCCCCccccccCCCceEeccCC-Ccc----chhhhcc
Q 002537 260 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWR-LLDPESNLINTKELLDRIVCVKSG-SRK----SLFNVFQ 333 (911)
Q Consensus 260 vKLRPgv~eLr~FL~a~~sk~FElyVyTmG~R~YA~~I~r-lLDP~g~lFg~~~l~~RIisresg-~~K----sL~~lfp 333 (911)
+++.||+.+++++|+ +.-+.+.|.|++.+.++..+++ . ++..++|+.|+|.++. ..| -+..++.
T Consensus 92 ~~l~pGv~elL~~Lk---~~g~~l~IvTn~~~~~~~~~l~~~-------~gl~~~Fd~ii~~d~v~~~KP~p~~~~~a~~ 161 (382)
T PLN02940 92 IKALPGANRLIKHLK---SHGVPMALASNSPRANIEAKISCH-------QGWKESFSVIVGGDEVEKGKPSPDIFLEAAK 161 (382)
T ss_pred CCCCcCHHHHHHHHH---HCCCcEEEEeCCcHHHHHHHHHhc-------cChHhhCCEEEehhhcCCCCCCHHHHHHHHH
Confidence 467799999888887 5679999999999999988775 4 4445566788887543 222 2333332
Q ss_pred CCCCCCcEEEEEcCCc
Q 002537 334 DGTCHPKMALVIDDRL 349 (911)
Q Consensus 334 ~~~~~~~mvVIIDDR~ 349 (911)
.....++-+|+|+|+.
T Consensus 162 ~lgv~p~~~l~VGDs~ 177 (382)
T PLN02940 162 RLNVEPSNCLVIEDSL 177 (382)
T ss_pred HcCCChhHEEEEeCCH
Confidence 2224567799999986
No 71
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=97.06 E-value=0.0038 Score=65.16 Aligned_cols=86 Identities=9% Similarity=0.010 Sum_probs=56.7
Q ss_pred EeeCcChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccCCCceEeccCC-Ccc----chhhhccC
Q 002537 260 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSG-SRK----SLFNVFQD 334 (911)
Q Consensus 260 vKLRPgv~eLr~FL~a~~sk~FElyVyTmG~R~YA~~I~rlLDP~g~lFg~~~l~~RIisresg-~~K----sL~~lfp~ 334 (911)
+++.||+.+++.+|+ ++-+.+.|.|++.+.++..+++.+.=.+ +| ++.|+|.++. ..| .+...+..
T Consensus 98 ~~~~pg~~e~L~~L~---~~g~~l~IvT~~~~~~~~~~l~~~gl~~-~f-----~d~ii~~~~~~~~KP~p~~~~~a~~~ 168 (253)
T TIGR01422 98 SSPIPGVIEVIAYLR---ARGIKIGSTTGYTREMMDVVAPEAALQG-YR-----PDYNVTTDDVPAGRPAPWMALKNAIE 168 (253)
T ss_pred CccCCCHHHHHHHHH---HCCCeEEEECCCcHHHHHHHHHHHHhcC-CC-----CceEEccccCCCCCCCHHHHHHHHHH
Confidence 567899999888887 4579999999999999999998854322 22 2688887542 111 22222221
Q ss_pred CCC-CCcEEEEEcCCc-ccCCC
Q 002537 335 GTC-HPKMALVIDDRL-KVWDD 354 (911)
Q Consensus 335 ~~~-~~~mvVIIDDR~-dVW~~ 354 (911)
... +++-+|+|+|+. |+-..
T Consensus 169 l~~~~~~~~l~IGDs~~Di~aA 190 (253)
T TIGR01422 169 LGVYDVAACVKVGDTVPDIEEG 190 (253)
T ss_pred cCCCCchheEEECCcHHHHHHH
Confidence 123 367789999984 34433
No 72
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=97.02 E-value=0.0062 Score=62.96 Aligned_cols=87 Identities=17% Similarity=0.198 Sum_probs=58.3
Q ss_pred EEeeCcChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccCCCceEeccCC-Cc----cchhhhcc
Q 002537 259 LVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSG-SR----KSLFNVFQ 333 (911)
Q Consensus 259 ~vKLRPgv~eLr~FL~a~~sk~FElyVyTmG~R~YA~~I~rlLDP~g~lFg~~~l~~RIisresg-~~----KsL~~lfp 333 (911)
..++-||+.+++.-|+ ++-|.+.|+|+..+..+..+++. ++...+|.-|++-++. .. ..|..+..
T Consensus 87 ~~~~~~gv~e~L~~L~---~~g~~l~i~T~k~~~~~~~~l~~-------~gl~~~F~~i~g~~~~~~~KP~P~~l~~~~~ 156 (220)
T COG0546 87 ESRLFPGVKELLAALK---SAGYKLGIVTNKPERELDILLKA-------LGLADYFDVIVGGDDVPPPKPDPEPLLLLLE 156 (220)
T ss_pred cCccCCCHHHHHHHHH---hCCCeEEEEeCCcHHHHHHHHHH-------hCCccccceEEcCCCCCCCCcCHHHHHHHHH
Confidence 3567799999888887 66699999999999999999998 6666777788883222 22 23444433
Q ss_pred CCCCCCcEEEEEcCC-cccCCCC
Q 002537 334 DGTCHPKMALVIDDR-LKVWDDK 355 (911)
Q Consensus 334 ~~~~~~~mvVIIDDR-~dVW~~~ 355 (911)
.....++-+++|.|+ .|+=..+
T Consensus 157 ~~~~~~~~~l~VGDs~~Di~aA~ 179 (220)
T COG0546 157 KLGLDPEEALMVGDSLNDILAAK 179 (220)
T ss_pred HhCCChhheEEECCCHHHHHHHH
Confidence 222334456666665 4454333
No 73
>KOG3769 consensus Ribonuclease III domain proteins [Translation, ribosomal structure and biogenesis]
Probab=97.00 E-value=0.00049 Score=75.28 Aligned_cols=70 Identities=20% Similarity=0.303 Sum_probs=62.7
Q ss_pred CCCCchHHHHHHHHhcCC-CeEEEEeeecC---CCceEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHHHh
Q 002537 703 STETPSGVLQDIAMKCGT-KVEFRPALVAS---TELQFSIEAWFAGEKIGEGIGRTRREAQRQAAEGSIKHLAN 772 (911)
Q Consensus 703 ~~~n~KT~LQE~~Qk~~~-~~~Y~~v~~~~---Hd~~FtveV~I~Ge~~G~G~GkSKKEAEq~AAk~AL~~L~~ 772 (911)
....|...|-++|++.+. +++|+++.+.+ -.+.|.|-++-|.+.+|+|.|.|-|.|++.||.+||.++=.
T Consensus 230 ql~~P~~~L~~lckr~~l~epe~Rll~esGr~S~~PvyvVgiYs~kkllGqG~Gesl~~A~e~AA~dAL~k~y~ 303 (333)
T KOG3769|consen 230 QLQWPRRLLSRLCKRRGLKEPESRLLAESGRNSAEPVYVVGIYSGKKLLGQGQGESLKLAEEQAARDALIKLYD 303 (333)
T ss_pred cccchHHHHHHHHHHcCCCCchhHHHHHhccCccCceEEEEeecCchhhccCcchHHHHHHHHHHHHHHHHHHc
Confidence 456789999999999996 59999988754 47999999999999999999999999999999999999843
No 74
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=96.97 E-value=0.0036 Score=61.31 Aligned_cols=78 Identities=14% Similarity=0.204 Sum_probs=50.3
Q ss_pred EeeCcChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccCCCceEeccC-CCcc----chhhhccC
Q 002537 260 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKS-GSRK----SLFNVFQD 334 (911)
Q Consensus 260 vKLRPgv~eLr~FL~a~~sk~FElyVyTmG~R~YA~~I~rlLDP~g~lFg~~~l~~RIisres-g~~K----sL~~lfp~ 334 (911)
.++.||+.++++.|+ +..+.++|.|++.. +..+++. ++...+|+.+++.++ +..| .+..++..
T Consensus 86 ~~~~pg~~~~L~~L~---~~g~~~~i~s~~~~--~~~~l~~-------~~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~ 153 (185)
T TIGR01990 86 ADVLPGIKNLLDDLK---KNNIKIALASASKN--APTVLEK-------LGLIDYFDAIVDPAEIKKGKPDPEIFLAAAEG 153 (185)
T ss_pred cccCccHHHHHHHHH---HCCCeEEEEeCCcc--HHHHHHh-------cCcHhhCcEEEehhhcCCCCCChHHHHHHHHH
Confidence 367799999888886 45799999998753 5556555 344556678887643 2112 22222222
Q ss_pred CCCCCcEEEEEcCCc
Q 002537 335 GTCHPKMALVIDDRL 349 (911)
Q Consensus 335 ~~~~~~mvVIIDDR~ 349 (911)
...+++-+|+|+|+.
T Consensus 154 ~~~~~~~~v~vgD~~ 168 (185)
T TIGR01990 154 LGVSPSECIGIEDAQ 168 (185)
T ss_pred cCCCHHHeEEEecCH
Confidence 225677899999984
No 75
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=96.78 E-value=0.0013 Score=66.94 Aligned_cols=82 Identities=7% Similarity=-0.006 Sum_probs=52.6
Q ss_pred EEeeCcChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccCCC-ceEecc-CCCcc----chhhhc
Q 002537 259 LVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLD-RIVCVK-SGSRK----SLFNVF 332 (911)
Q Consensus 259 ~vKLRPgv~eLr~FL~a~~sk~FElyVyTmG~R~YA~~I~rlLDP~g~lFg~~~l~~-RIisre-sg~~K----sL~~lf 332 (911)
.+++.||+.++++.| .+.+.|.||+.+.++..+++. ++...+|. -|+|.+ .+..| .+..++
T Consensus 86 ~~~~~~gv~~~L~~L------~~~~~ivTn~~~~~~~~~l~~-------~~l~~~F~~~v~~~~~~~~~KP~p~~~~~a~ 152 (221)
T PRK10563 86 ELEPIAGANALLESI------TVPMCVVSNGPVSKMQHSLGK-------TGMLHYFPDKLFSGYDIQRWKPDPALMFHAA 152 (221)
T ss_pred cCCcCCCHHHHHHHc------CCCEEEEeCCcHHHHHHHHHh-------cChHHhCcceEeeHHhcCCCCCChHHHHHHH
Confidence 356679999955544 289999999999999998877 44444553 566663 23222 223233
Q ss_pred cCCCCCCcEEEEEcCCcccCC
Q 002537 333 QDGTCHPKMALVIDDRLKVWD 353 (911)
Q Consensus 333 p~~~~~~~mvVIIDDR~dVW~ 353 (911)
......++-+|+|+|+..=..
T Consensus 153 ~~~~~~p~~~l~igDs~~di~ 173 (221)
T PRK10563 153 EAMNVNVENCILVDDSSAGAQ 173 (221)
T ss_pred HHcCCCHHHeEEEeCcHhhHH
Confidence 222256678899999865443
No 76
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=96.77 E-value=0.001 Score=65.60 Aligned_cols=77 Identities=17% Similarity=0.157 Sum_probs=52.1
Q ss_pred eeCcChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccCCCceEeccCC-Cccc----hhhhccCC
Q 002537 261 RLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSG-SRKS----LFNVFQDG 335 (911)
Q Consensus 261 KLRPgv~eLr~FL~a~~sk~FElyVyTmG~R~YA~~I~rlLDP~g~lFg~~~l~~RIisresg-~~Ks----L~~lfp~~ 335 (911)
++-|++ +++..|+ +.+.+.|.|++.+.++..+++. ++...+|+.|+|.++. ..|. +..++...
T Consensus 88 ~~~~~~-e~L~~L~----~~~~l~I~T~~~~~~~~~~l~~-------~~l~~~fd~i~~~~~~~~~KP~p~~~~~~~~~~ 155 (188)
T PRK10725 88 EPLPLI-EVVKAWH----GRRPMAVGTGSESAIAEALLAH-------LGLRRYFDAVVAADDVQHHKPAPDTFLRCAQLM 155 (188)
T ss_pred CCccHH-HHHHHHH----hCCCEEEEcCCchHHHHHHHHh-------CCcHhHceEEEehhhccCCCCChHHHHHHHHHc
Confidence 445764 6555554 3479999999999999999998 5555566789988543 2222 34433322
Q ss_pred CCCCcEEEEEcCCc
Q 002537 336 TCHPKMALVIDDRL 349 (911)
Q Consensus 336 ~~~~~mvVIIDDR~ 349 (911)
.+.++-+|+|||+.
T Consensus 156 ~~~~~~~l~igDs~ 169 (188)
T PRK10725 156 GVQPTQCVVFEDAD 169 (188)
T ss_pred CCCHHHeEEEeccH
Confidence 35677889999984
No 77
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=96.76 E-value=0.00083 Score=67.79 Aligned_cols=79 Identities=18% Similarity=0.185 Sum_probs=52.7
Q ss_pred EeeCcChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccCCCceEec-cCCCcc----chhhhccC
Q 002537 260 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCV-KSGSRK----SLFNVFQD 334 (911)
Q Consensus 260 vKLRPgv~eLr~FL~a~~sk~FElyVyTmG~R~YA~~I~rlLDP~g~lFg~~~l~~RIisr-esg~~K----sL~~lfp~ 334 (911)
++.-|++.+ +|+ +..++|.|+|.|||.+.++.+.++- .|...+|+-|++. +-|..| -...++..
T Consensus 98 ~~~~~~~~~---~L~-~l~~~~~l~ilTNg~~~~~~~~l~~-------~gl~~~Fd~v~~s~~~g~~KP~~~~f~~~~~~ 166 (229)
T COG1011 98 LPDYPEALE---ALK-ELGKKYKLGILTNGARPHQERKLRQ-------LGLLDYFDAVFISEDVGVAKPDPEIFEYALEK 166 (229)
T ss_pred CccChhHHH---HHH-HHHhhccEEEEeCCChHHHHHHHHH-------cCChhhhheEEEecccccCCCCcHHHHHHHHH
Confidence 455566666 665 4344499999999999999999998 3444555677665 444333 23333333
Q ss_pred CCCCCcEEEEEcCCc
Q 002537 335 GTCHPKMALVIDDRL 349 (911)
Q Consensus 335 ~~~~~~mvVIIDDR~ 349 (911)
.+..++-++.|||+.
T Consensus 167 ~g~~p~~~l~VgD~~ 181 (229)
T COG1011 167 LGVPPEEALFVGDSL 181 (229)
T ss_pred cCCCcceEEEECCCh
Confidence 335688999999985
No 78
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=96.74 E-value=0.014 Score=61.86 Aligned_cols=81 Identities=11% Similarity=0.056 Sum_probs=54.0
Q ss_pred EeeCcChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccCCCceEeccCC-Ccc----chhhhccC
Q 002537 260 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSG-SRK----SLFNVFQD 334 (911)
Q Consensus 260 vKLRPgv~eLr~FL~a~~sk~FElyVyTmG~R~YA~~I~rlLDP~g~lFg~~~l~~RIisresg-~~K----sL~~lfp~ 334 (911)
+++-||+.+++.+|+ ++-|.+.|.|++.+.++..+++.+.=.+ +|- +.|+|.++. ..| -+..++..
T Consensus 100 ~~~~pg~~elL~~L~---~~g~~l~I~T~~~~~~~~~~l~~~~l~~-~~~-----d~i~~~~~~~~~KP~p~~~~~a~~~ 170 (267)
T PRK13478 100 ATPIPGVLEVIAALR---ARGIKIGSTTGYTREMMDVVVPLAAAQG-YRP-----DHVVTTDDVPAGRPYPWMALKNAIE 170 (267)
T ss_pred CCCCCCHHHHHHHHH---HCCCEEEEEcCCcHHHHHHHHHHHhhcC-CCc-----eEEEcCCcCCCCCCChHHHHHHHHH
Confidence 467799999999997 5679999999999999999988743222 222 577777542 222 12222221
Q ss_pred CCCC-CcEEEEEcCCc
Q 002537 335 GTCH-PKMALVIDDRL 349 (911)
Q Consensus 335 ~~~~-~~mvVIIDDR~ 349 (911)
.... ++-+|+|+|+.
T Consensus 171 l~~~~~~e~l~IGDs~ 186 (267)
T PRK13478 171 LGVYDVAACVKVDDTV 186 (267)
T ss_pred cCCCCCcceEEEcCcH
Confidence 1133 47799999986
No 79
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family. which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.
Probab=96.58 E-value=0.011 Score=64.31 Aligned_cols=77 Identities=14% Similarity=0.103 Sum_probs=48.6
Q ss_pred CcChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccCCCceEeccCCCccch--hhhccCCCCCCc
Q 002537 263 RPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSGSRKSL--FNVFQDGTCHPK 340 (911)
Q Consensus 263 RPgv~eLr~FL~a~~sk~FElyVyTmG~R~YA~~I~rlLDP~g~lFg~~~l~~RIisresg~~KsL--~~lfp~~~~~~~ 340 (911)
-||..+++.+|. ++-..++|.|+..+.+.....+.|.-.|--. ...+.|+.+++...|.. ..|-. .-.
T Consensus 120 ipGA~e~L~~L~---~~G~~v~iVTnR~~~~~~~T~~~Lkk~Gi~~---~~~d~lllr~~~~~K~~rr~~I~~----~y~ 189 (266)
T TIGR01533 120 VAGALDFLNYAN---SKGVKIFYVSNRSEKEKAATLKNLKRFGFPQ---ADEEHLLLKKDKSSKESRRQKVQK----DYE 189 (266)
T ss_pred CccHHHHHHHHH---HCCCeEEEEeCCCcchHHHHHHHHHHcCcCC---CCcceEEeCCCCCCcHHHHHHHHh----cCC
Confidence 389999777776 5668899999988777665555554333211 01267888765443432 22222 346
Q ss_pred EEEEEcCCc
Q 002537 341 MALVIDDRL 349 (911)
Q Consensus 341 mvVIIDDR~ 349 (911)
+++.|+|+.
T Consensus 190 Ivl~vGD~~ 198 (266)
T TIGR01533 190 IVLLFGDNL 198 (266)
T ss_pred EEEEECCCH
Confidence 799999983
No 80
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=96.52 E-value=0.0093 Score=61.34 Aligned_cols=39 Identities=10% Similarity=0.299 Sum_probs=34.7
Q ss_pred EeeCcChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhh
Q 002537 260 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLL 301 (911)
Q Consensus 260 vKLRPgv~eLr~FL~a~~sk~FElyVyTmG~R~YA~~I~rlL 301 (911)
++++||+.+++.+|+ .+-+.+.|.|+|.+.|+..+++.+
T Consensus 73 ~~l~pG~~e~l~~l~---~~g~~~~IvS~~~~~~i~~il~~~ 111 (219)
T PRK09552 73 AEIREGFHEFVQFVK---ENNIPFYVVSGGMDFFVYPLLQGL 111 (219)
T ss_pred CCcCcCHHHHHHHHH---HcCCeEEEECCCcHHHHHHHHHHh
Confidence 578999999888887 577999999999999999999874
No 81
>KOG4334 consensus Uncharacterized conserved protein, contains double-stranded RNA-binding motif and WW domain [General function prediction only]
Probab=96.48 E-value=0.0021 Score=74.01 Aligned_cols=66 Identities=20% Similarity=0.108 Sum_probs=52.0
Q ss_pred CCChHHHHHHHHHhc---CCceeEeecCCCCCCCCCCCcEEEEEEECCEEEceeecCCHHHHHHHHHHHHHHHHH
Q 002537 836 LMGSVSALKELCMTE---GLGVVFQQQPPSSANSVQKDEVYAQVEIDGQVLGKGIGSTWDEAKMQVFLLDIQNFL 907 (911)
Q Consensus 836 ~~NyIglLNELCqke---gl~v~f~~~~~~~sgg~h~~eF~~qVeIgGk~yg~G~GsTKKEAKqqAAklAl~kl~ 907 (911)
-+..|..|+||+|.- .-.++|.++ ...+.. |.+.|.||+..||.|+|.|||.||..||+.+|+.|.
T Consensus 374 gks~vCiLhEy~q~~lk~~pvyef~e~----~n~stp--ysa~v~~d~~~yGsG~g~sKK~Ak~~AAR~tLeiLI 442 (650)
T KOG4334|consen 374 GKSKVCILHEYAQQCLKSLPVYEFAEN----DNNSTP--YSAGVLPDLFPYGSGVGASKKTAKLVAARDTLEILI 442 (650)
T ss_pred CceeeehHHHHHHHHhhhcceeehhhc----cCCCCc--ccccccccccccccccccchHHHHHHHHHHHHHHhc
Confidence 346789999998643 334455554 233443 999999999999999999999999999999999763
No 82
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=96.48 E-value=0.0053 Score=62.02 Aligned_cols=83 Identities=23% Similarity=0.158 Sum_probs=47.8
Q ss_pred EEeeCcChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccCCCceEeccC-CCcc----chhhhcc
Q 002537 259 LVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKS-GSRK----SLFNVFQ 333 (911)
Q Consensus 259 ~vKLRPgv~eLr~FL~a~~sk~FElyVyTmG~R~YA~~I~rlLDP~g~lFg~~~l~~RIisres-g~~K----sL~~lfp 333 (911)
.+++.|++.+++..|+ ++-|.++|.||+...+...+..++ . ++...+|+.|++.++ +..| -+..+..
T Consensus 92 ~~~~~~~~~~~L~~L~---~~g~~l~i~Sn~~~~~~~~~~~~~-~----~~l~~~fd~v~~s~~~~~~KP~p~~~~~~~~ 163 (211)
T TIGR02247 92 NTKLRPSMMAAIKTLR---AKGFKTACITNNFPTDHSAEEALL-P----GDIMALFDAVVESCLEGLRKPDPRIYQLMLE 163 (211)
T ss_pred ccccChhHHHHHHHHH---HCCCeEEEEeCCCCccchhhhHhh-h----hhhHhhCCEEEEeeecCCCCCCHHHHHHHHH
Confidence 4678899999777776 456999999999865522222221 1 122345567776532 2222 1222222
Q ss_pred CCCCCCcEEEEEcCCc
Q 002537 334 DGTCHPKMALVIDDRL 349 (911)
Q Consensus 334 ~~~~~~~mvVIIDDR~ 349 (911)
.....++-+|+|||+.
T Consensus 164 ~~g~~~~~~l~i~D~~ 179 (211)
T TIGR02247 164 RLGVAPEECVFLDDLG 179 (211)
T ss_pred HcCCCHHHeEEEcCCH
Confidence 2124566777789974
No 83
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=96.44 E-value=0.016 Score=59.52 Aligned_cols=47 Identities=6% Similarity=0.222 Sum_probs=39.2
Q ss_pred EeeCcChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccc
Q 002537 260 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLIN 309 (911)
Q Consensus 260 vKLRPgv~eLr~FL~a~~sk~FElyVyTmG~R~YA~~I~rlLDP~g~lFg 309 (911)
+++|||+.+++.+|+ ..-+.++|.|.|.+.|+..+++.+.+...+++
T Consensus 69 ~~l~pg~~e~l~~l~---~~g~~~~IvS~~~~~~i~~il~~~~~~~~i~~ 115 (214)
T TIGR03333 69 AEIREGFREFVAFIN---EHGIPFYVISGGMDFFVYPLLEGIVEKDRIYC 115 (214)
T ss_pred CcccccHHHHHHHHH---HCCCeEEEECCCcHHHHHHHHHhhCCcccEEe
Confidence 578999999888886 56799999999999999999998765444444
No 84
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=96.36 E-value=0.019 Score=57.50 Aligned_cols=45 Identities=18% Similarity=0.239 Sum_probs=35.6
Q ss_pred EeeCcChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccc
Q 002537 260 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLIN 309 (911)
Q Consensus 260 vKLRPgv~eLr~FL~a~~sk~FElyVyTmG~R~YA~~I~rlLDP~g~lFg 309 (911)
+++.||+.+++.+|+ +. +.+.|.|++.+.++..+++.++=. .+|.
T Consensus 67 ~~~~pg~~e~L~~L~---~~-~~~~IvS~~~~~~~~~~l~~~gl~-~~f~ 111 (205)
T PRK13582 67 LDPLPGAVEFLDWLR---ER-FQVVILSDTFYEFAGPLMRQLGWP-TLFC 111 (205)
T ss_pred CCCCCCHHHHHHHHH---hc-CCEEEEeCCcHHHHHHHHHHcCCc-hhhc
Confidence 356799999888886 44 899999999999999998886543 3454
No 85
>PHA02597 30.2 hypothetical protein; Provisional
Probab=96.33 E-value=0.0047 Score=61.87 Aligned_cols=83 Identities=10% Similarity=0.097 Sum_probs=50.1
Q ss_pred EEeeCcChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccCCCceEeccCCCcc--chhhhccCCC
Q 002537 259 LVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSGSRK--SLFNVFQDGT 336 (911)
Q Consensus 259 ~vKLRPgv~eLr~FL~a~~sk~FElyVyTmG~R~YA~~I~rlLDP~g~lFg~~~l~~RIisresg~~K--sL~~lfp~~~ 336 (911)
.+++.||+.+++..|+ +.|.+++.|++.......+.+.+.- ..+|. .+|+.|++.++...| -+..+...-
T Consensus 72 ~~~~~pG~~e~L~~L~----~~~~~~i~Tn~~~~~~~~~~~~~~l-~~~f~--~~f~~i~~~~~~~~kp~~~~~a~~~~- 143 (197)
T PHA02597 72 YLSAYDDALDVINKLK----EDYDFVAVTALGDSIDALLNRQFNL-NALFP--GAFSEVLMCGHDESKEKLFIKAKEKY- 143 (197)
T ss_pred hccCCCCHHHHHHHHH----hcCCEEEEeCCccchhHHHHhhCCH-HHhCC--CcccEEEEeccCcccHHHHHHHHHHh-
Confidence 3567899999777775 2366888899887655555555532 24453 244577776544222 222222221
Q ss_pred CCCcEEEEEcCCcc
Q 002537 337 CHPKMALVIDDRLK 350 (911)
Q Consensus 337 ~~~~mvVIIDDR~d 350 (911)
. ++-+|+|||+..
T Consensus 144 ~-~~~~v~vgDs~~ 156 (197)
T PHA02597 144 G-DRVVCFVDDLAH 156 (197)
T ss_pred C-CCcEEEeCCCHH
Confidence 1 567999999853
No 86
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=96.16 E-value=0.013 Score=62.70 Aligned_cols=72 Identities=8% Similarity=0.020 Sum_probs=45.2
Q ss_pred cChhhHHHHHhhhccccEEEEEEeCC----cHHHHHHHHHhhCCCCCccccccCCCceEeccCC-Ccc-chhhhccCCCC
Q 002537 264 PAWEDLRSYLTARGRKRFEVYVCTMA----ERDYALEMWRLLDPESNLINTKELLDRIVCVKSG-SRK-SLFNVFQDGTC 337 (911)
Q Consensus 264 Pgv~eLr~FL~a~~sk~FElyVyTmG----~R~YA~~I~rlLDP~g~lFg~~~l~~RIisresg-~~K-sL~~lfp~~~~ 337 (911)
|++.+++.+|. .+-+.++|+|+. .+.++..+++.+ +..+.+.-|++.++. ..| .-...+.
T Consensus 117 ~~a~elL~~l~---~~G~~i~iVTnr~~~k~~~~a~~ll~~l-------Gi~~~f~~i~~~d~~~~~Kp~~~~~l~---- 182 (237)
T TIGR01672 117 EVARQLIDMHQ---RRGDAIFFVTGRTPGKTDTVSKTLAKNF-------HIPAMNPVIFAGDKPGQYQYTKTQWIQ---- 182 (237)
T ss_pred hHHHHHHHHHH---HCCCEEEEEeCCCCCcCHHHHHHHHHHh-------CCchheeEEECCCCCCCCCCCHHHHHH----
Confidence 45999777776 677999999998 677999999874 433444456665442 111 1122222
Q ss_pred CCcEEEEEcCCc
Q 002537 338 HPKMALVIDDRL 349 (911)
Q Consensus 338 ~~~mvVIIDDR~ 349 (911)
....++.|.|+.
T Consensus 183 ~~~i~i~vGDs~ 194 (237)
T TIGR01672 183 DKNIRIHYGDSD 194 (237)
T ss_pred hCCCeEEEeCCH
Confidence 234467787774
No 87
>KOG3769 consensus Ribonuclease III domain proteins [Translation, ribosomal structure and biogenesis]
Probab=96.14 E-value=0.0059 Score=67.18 Aligned_cols=74 Identities=16% Similarity=0.140 Sum_probs=59.4
Q ss_pred CCCChHHHHHHHHHhcCCceeEeecCCCCCCCCCC-CcEEEEEEECCEEEceeecCCHHHHHHHHHHHHHHHHHhh
Q 002537 835 KLMGSVSALKELCMTEGLGVVFQQQPPSSANSVQK-DEVYAQVEIDGQVLGKGIGSTWDEAKMQVFLLDIQNFLAL 909 (911)
Q Consensus 835 ~~~NyIglLNELCqkegl~v~f~~~~~~~sgg~h~-~eF~~qVeIgGk~yg~G~GsTKKEAKqqAAklAl~kl~~~ 909 (911)
..-+|+++|-++|+++|+.=...-. ..++|.-.. |-|++-+--|.|.+|+|.|.|-++|+++||..||.+++..
T Consensus 230 ql~~P~~~L~~lckr~~l~epe~Rl-l~esGr~S~~PvyvVgiYs~kkllGqG~Gesl~~A~e~AA~dAL~k~y~~ 304 (333)
T KOG3769|consen 230 QLQWPRRLLSRLCKRRGLKEPESRL-LAESGRNSAEPVYVVGIYSGKKLLGQGQGESLKLAEEQAARDALIKLYDH 304 (333)
T ss_pred cccchHHHHHHHHHHcCCCCchhHH-HHHhccCccCceEEEEeecCchhhccCcchHHHHHHHHHHHHHHHHHHcC
Confidence 5679999999999999887655544 233455444 5566666669999999999999999999999999999864
No 88
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=95.99 E-value=0.018 Score=63.86 Aligned_cols=105 Identities=17% Similarity=0.262 Sum_probs=66.4
Q ss_pred eC-cChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccCCCceEeccCCCccchhhhccCCCCCCc
Q 002537 262 LR-PAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSGSRKSLFNVFQDGTCHPK 340 (911)
Q Consensus 262 LR-Pgv~eLr~FL~a~~sk~FElyVyTmG~R~YA~~I~rlLDP~g~lFg~~~l~~RIisresg~~KsL~~lfp~~~~~~~ 340 (911)
+| |++.+++..|+ ++-+-+.|+|+|.|.++..+++. ++....|+-|+|.++...|. +
T Consensus 148 irdp~V~EtL~eLk---ekGikLaIvTNg~Re~v~~~Le~-------lgL~~yFDvII~~g~i~~k~------------~ 205 (303)
T PHA03398 148 IRDPFVYDSLDELK---ERGCVLVLWSYGNREHVVHSLKE-------TKLEGYFDIIICGGRKAGEY------------S 205 (303)
T ss_pred cCChhHHHHHHHHH---HCCCEEEEEcCCChHHHHHHHHH-------cCCCccccEEEECCCccccc------------c
Confidence 45 78999777776 56799999999999999999998 44445556777765433222 2
Q ss_pred EEEEEcCCcccCCCCCCCCeEEeccccCccCchhhhcc--cCchHHHHHHHHhhhcccchhch
Q 002537 341 MALVIDDRLKVWDDKDQPRVHVVPAFAPYYAPQAEANN--AIPVLCVARNIACNVRGGFFKEF 401 (911)
Q Consensus 341 mvVIIDDR~dVW~~~~~~~v~vV~~Y~pf~~~q~e~~~--~~p~L~~a~~vl~~Vh~~FF~~~ 401 (911)
.-+++|++.+ .+.+..+ |+.......+ +.| -+++..|.+.-=.|||.+
T Consensus 206 ~~~~~d~~~~--------~~~~~~~---f~~d~~~~~~lPKSp--rvVl~yL~~~gvn~~Kti 255 (303)
T PHA03398 206 RRVIVDNKYK--------MVFVKKP---FYLDVTDVKNLPKSP--RVVLWYLRKKGVNYFKTI 255 (303)
T ss_pred cceeecccce--------eEEecCc---eeEeCCcccCCCCCC--eehHHHHHHcCcceeccE
Confidence 3456666532 2333333 3333222211 233 557888888766888865
No 89
>COG4996 Predicted phosphatase [General function prediction only]
Probab=95.91 E-value=0.014 Score=58.18 Aligned_cols=94 Identities=18% Similarity=0.244 Sum_probs=63.9
Q ss_pred EEeeCcChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccCCCceEeccCC-CccchhhhccC---
Q 002537 259 LVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSG-SRKSLFNVFQD--- 334 (911)
Q Consensus 259 ~vKLRPgv~eLr~FL~a~~sk~FElyVyTmG~R~YA~~I~rlLDP~g~lFg~~~l~~RIisresg-~~KsL~~lfp~--- 334 (911)
-|+|+|.+.+++.+++ +.-|-+-.+|=+-.+-|.++++.||-. +||. =++--... .-+-|..++..
T Consensus 39 ev~L~~~v~~~l~war---nsG~i~~~~sWN~~~kA~~aLral~~~-~yFh------y~ViePhP~K~~ML~~llr~i~~ 108 (164)
T COG4996 39 EVHLFPDVKETLKWAR---NSGYILGLASWNFEDKAIKALRALDLL-QYFH------YIVIEPHPYKFLMLSQLLREINT 108 (164)
T ss_pred EEEEcHHHHHHHHHHH---hCCcEEEEeecCchHHHHHHHHHhchh-hhEE------EEEecCCChhHHHHHHHHHHHHH
Confidence 5789999999666665 667899999999999999999997765 3455 33322111 22334444421
Q ss_pred ---CCCCCcEEEEEcCCc----ccCCCCCCCCeEEec
Q 002537 335 ---GTCHPKMALVIDDRL----KVWDDKDQPRVHVVP 364 (911)
Q Consensus 335 ---~~~~~~mvVIIDDR~----dVW~~~~~~~v~vV~ 364 (911)
.--.|+-+|.+|||. ++|+.- .+|..++
T Consensus 109 er~~~ikP~~Ivy~DDR~iH~~~Iwe~~--G~V~~~~ 143 (164)
T COG4996 109 ERNQKIKPSEIVYLDDRRIHFGNIWEYL--GNVKCLE 143 (164)
T ss_pred hhccccCcceEEEEecccccHHHHHHhc--CCeeeeE
Confidence 113568899999996 678876 5665444
No 90
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=95.89 E-value=0.015 Score=64.33 Aligned_cols=51 Identities=22% Similarity=0.309 Sum_probs=39.6
Q ss_pred eeC-cChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccCCCceEecc
Q 002537 261 RLR-PAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVK 321 (911)
Q Consensus 261 KLR-Pgv~eLr~FL~a~~sk~FElyVyTmG~R~YA~~I~rlLDP~g~lFg~~~l~~RIisre 321 (911)
++| |++.|++..|+ ++.+-+.|.|.|.|.+|.++++.+ |....|+-|+|-+
T Consensus 145 ~irdPgV~EaL~~Lk---ekGikLaIaTS~~Re~v~~~L~~l-------GLd~YFdvIIs~G 196 (301)
T TIGR01684 145 RIRDPRIYDSLTELK---KRGCILVLWSYGDRDHVVESMRKV-------KLDRYFDIIISGG 196 (301)
T ss_pred ccCCHHHHHHHHHHH---HCCCEEEEEECCCHHHHHHHHHHc-------CCCcccCEEEECC
Confidence 345 89999777776 567899999999999999999984 4444455777753
No 91
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=95.88 E-value=0.023 Score=57.48 Aligned_cols=82 Identities=22% Similarity=0.180 Sum_probs=50.4
Q ss_pred EEeeCcChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccCCCceEeccC-CCccc----hhhhcc
Q 002537 259 LVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKS-GSRKS----LFNVFQ 333 (911)
Q Consensus 259 ~vKLRPgv~eLr~FL~a~~sk~FElyVyTmG~R~YA~~I~rlLDP~g~lFg~~~l~~RIisres-g~~Ks----L~~lfp 333 (911)
+.++.||+.++++.|+ ++-|.++|.||+.+.....+... +.+....|+.|++.++ +..|. +..+..
T Consensus 82 ~~~~~~g~~e~L~~l~---~~g~~~~i~Sn~~~~~~~~~~~~------~~~l~~~fd~v~~s~~~~~~KP~p~~~~~~~~ 152 (199)
T PRK09456 82 FVALRPEVIAIMHKLR---EQGHRVVVLSNTNRLHTTFWPEE------YPEVRAAADHIYLSQDLGMRKPEARIYQHVLQ 152 (199)
T ss_pred HhccCHHHHHHHHHHH---hCCCcEEEEcCCchhhHHHHHhh------chhHHHhcCEEEEecccCCCCCCHHHHHHHHH
Confidence 4568899999777776 45699999999998876543322 1122334567776532 22221 222222
Q ss_pred CCCCCCcEEEEEcCCc
Q 002537 334 DGTCHPKMALVIDDRL 349 (911)
Q Consensus 334 ~~~~~~~mvVIIDDR~ 349 (911)
.....++-+++|||+.
T Consensus 153 ~~~~~p~~~l~vgD~~ 168 (199)
T PRK09456 153 AEGFSAADAVFFDDNA 168 (199)
T ss_pred HcCCChhHeEEeCCCH
Confidence 2225778899999985
No 92
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=95.31 E-value=0.04 Score=57.19 Aligned_cols=44 Identities=16% Similarity=0.243 Sum_probs=35.1
Q ss_pred eeCcChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccc
Q 002537 261 RLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLIN 309 (911)
Q Consensus 261 KLRPgv~eLr~FL~a~~sk~FElyVyTmG~R~YA~~I~rlLDP~g~lFg 309 (911)
+++||+.+++.+|+ + .+.+.|.|.|.+.|+..+++.|.=+ .+|.
T Consensus 68 ~l~pga~ell~~lk-~---~~~~~IVS~~~~~~~~~il~~lgi~-~~~a 111 (203)
T TIGR02137 68 KPLEGAVEFVDWLR-E---RFQVVILSDTFYEFSQPLMRQLGFP-TLLC 111 (203)
T ss_pred CCCccHHHHHHHHH-h---CCeEEEEeCChHHHHHHHHHHcCCc-hhhc
Confidence 56899999777776 2 3699999999999999999996644 3454
No 93
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=95.26 E-value=0.06 Score=68.37 Aligned_cols=79 Identities=19% Similarity=0.102 Sum_probs=53.8
Q ss_pred eCcChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccCCCceEeccCC-Cccc----hhhhccCCC
Q 002537 262 LRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSG-SRKS----LFNVFQDGT 336 (911)
Q Consensus 262 LRPgv~eLr~FL~a~~sk~FElyVyTmG~R~YA~~I~rlLDP~g~lFg~~~l~~RIisresg-~~Ks----L~~lfp~~~ 336 (911)
+-||+.+++++|+ ++-|.+.|.|++.+.++..+++.++=.. .+|+.|++.++. ..|. +..+.....
T Consensus 162 ~~pG~~elL~~Lk---~~G~~l~IvSn~~~~~~~~~L~~~gl~~------~~Fd~iv~~~~~~~~KP~Pe~~~~a~~~lg 232 (1057)
T PLN02919 162 GFPGALELITQCK---NKGLKVAVASSADRIKVDANLAAAGLPL------SMFDAIVSADAFENLKPAPDIFLAAAKILG 232 (1057)
T ss_pred cCccHHHHHHHHH---hCCCeEEEEeCCcHHHHHHHHHHcCCCh------hHCCEEEECcccccCCCCHHHHHHHHHHcC
Confidence 5699999999997 5679999999999999999988743222 344688877543 2221 122222112
Q ss_pred CCCcEEEEEcCCc
Q 002537 337 CHPKMALVIDDRL 349 (911)
Q Consensus 337 ~~~~mvVIIDDR~ 349 (911)
..++-+|+|+|+.
T Consensus 233 v~p~e~v~IgDs~ 245 (1057)
T PLN02919 233 VPTSECVVIEDAL 245 (1057)
T ss_pred cCcccEEEEcCCH
Confidence 5667799999985
No 94
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=95.19 E-value=0.018 Score=60.14 Aligned_cols=80 Identities=14% Similarity=0.112 Sum_probs=50.6
Q ss_pred EeeCcChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccCCCceEeccC-CCccc----hhhhccC
Q 002537 260 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKS-GSRKS----LFNVFQD 334 (911)
Q Consensus 260 vKLRPgv~eLr~FL~a~~sk~FElyVyTmG~R~YA~~I~rlLDP~g~lFg~~~l~~RIisres-g~~Ks----L~~lfp~ 334 (911)
+++-||+.+++..|+ +.|-+.|.|+|+... ..++...+|+.|++.++ +..|- +..++..
T Consensus 112 ~~~~~gv~~~L~~L~----~~~~l~i~Tn~~~~~------------~~~gl~~~fd~i~~~~~~~~~KP~p~~~~~a~~~ 175 (238)
T PRK10748 112 IDVPQATHDTLKQLA----KKWPLVAITNGNAQP------------ELFGLGDYFEFVLRAGPHGRSKPFSDMYHLAAEK 175 (238)
T ss_pred CCCCccHHHHHHHHH----cCCCEEEEECCCchH------------HHCCcHHhhceeEecccCCcCCCcHHHHHHHHHH
Confidence 456689999666664 348999999998751 23566677778887643 22222 2222222
Q ss_pred CCCCCcEEEEEcCC--cccCCCC
Q 002537 335 GTCHPKMALVIDDR--LKVWDDK 355 (911)
Q Consensus 335 ~~~~~~mvVIIDDR--~dVW~~~ 355 (911)
..+.++-+|+|.|+ .||-...
T Consensus 176 ~~~~~~~~~~VGD~~~~Di~~A~ 198 (238)
T PRK10748 176 LNVPIGEILHVGDDLTTDVAGAI 198 (238)
T ss_pred cCCChhHEEEEcCCcHHHHHHHH
Confidence 22567788999887 5786544
No 95
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=95.13 E-value=0.065 Score=56.20 Aligned_cols=86 Identities=19% Similarity=0.148 Sum_probs=56.3
Q ss_pred EeeCcChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccc---ccc--CCCceEec---cCCCccchhhh
Q 002537 260 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLIN---TKE--LLDRIVCV---KSGSRKSLFNV 331 (911)
Q Consensus 260 vKLRPgv~eLr~FL~a~~sk~FElyVyTmG~R~YA~~I~rlLDP~g~lFg---~~~--l~~RIisr---esg~~KsL~~l 331 (911)
++++|+.++|..+|+ +.-+.+.|.|-|-..|+..|++.|.-+..+=. ..+ +..+|+.. ..+..+.|.++
T Consensus 76 ~~l~~ga~elv~~lk---~~G~~v~iiSgg~~~lv~~ia~~lg~d~~~an~l~~~dG~ltG~v~g~~~~~~~K~~~l~~~ 152 (212)
T COG0560 76 LRLTPGAEELVAALK---AAGAKVVIISGGFTFLVEPIAERLGIDYVVANELEIDDGKLTGRVVGPICDGEGKAKALREL 152 (212)
T ss_pred CcCCccHHHHHHHHH---HCCCEEEEEcCChHHHHHHHHHHhCCchheeeEEEEeCCEEeceeeeeecCcchHHHHHHHH
Confidence 788999999999998 77899999999999999999999876532110 000 11344322 22233556666
Q ss_pred ccCCCCCCcEEEEEcCC
Q 002537 332 FQDGTCHPKMALVIDDR 348 (911)
Q Consensus 332 fp~~~~~~~mvVIIDDR 348 (911)
+.......+-++-+-|.
T Consensus 153 ~~~~g~~~~~~~a~gDs 169 (212)
T COG0560 153 AAELGIPLEETVAYGDS 169 (212)
T ss_pred HHHcCCCHHHeEEEcCc
Confidence 65322344566666665
No 96
>PRK08238 hypothetical protein; Validated
Probab=95.07 E-value=0.081 Score=61.92 Aligned_cols=78 Identities=14% Similarity=0.134 Sum_probs=52.9
Q ss_pred eeCcChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccCCCceEeccCC-----Ccc--chhhhcc
Q 002537 261 RLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSG-----SRK--SLFNVFQ 333 (911)
Q Consensus 261 KLRPgv~eLr~FL~a~~sk~FElyVyTmG~R~YA~~I~rlLDP~g~lFg~~~l~~RIisresg-----~~K--sL~~lfp 333 (911)
.++|++.++++.++ ++-+.+.|.|++.+.|++.+++.+. +|+.|++-++. ..| .|.+.++
T Consensus 72 p~~pga~e~L~~lk---~~G~~v~LaTas~~~~a~~i~~~lG----------lFd~Vigsd~~~~~kg~~K~~~l~~~l~ 138 (479)
T PRK08238 72 PYNEEVLDYLRAER---AAGRKLVLATASDERLAQAVAAHLG----------LFDGVFASDGTTNLKGAAKAAALVEAFG 138 (479)
T ss_pred CCChhHHHHHHHHH---HCCCEEEEEeCCCHHHHHHHHHHcC----------CCCEEEeCCCccccCCchHHHHHHHHhC
Confidence 47799999555554 6779999999999999999999962 24688877543 112 2333343
Q ss_pred CCCCCCcEEEEEcCCc---ccCCCCC
Q 002537 334 DGTCHPKMALVIDDRL---KVWDDKD 356 (911)
Q Consensus 334 ~~~~~~~mvVIIDDR~---dVW~~~~ 356 (911)
++.++.+.|+. .+|...+
T Consensus 139 -----~~~~~yvGDS~~Dlp~~~~A~ 159 (479)
T PRK08238 139 -----ERGFDYAGNSAADLPVWAAAR 159 (479)
T ss_pred -----ccCeeEecCCHHHHHHHHhCC
Confidence 23345567776 4787764
No 97
>KOG0323 consensus TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=95.03 E-value=0.026 Score=67.73 Aligned_cols=59 Identities=24% Similarity=0.308 Sum_probs=44.6
Q ss_pred hcccCchHHHHHHHHhhhcccchhchhhhhhhccccccccCcCCCCCCCCCcccceeccccccccCCCCCcccC
Q 002537 376 ANNAIPVLCVARNIACNVRGGFFKEFDEGLLQRIPEISYEDDVKDIPSPPDVSNYLVSEDDAATANGIKDPLSF 449 (911)
Q Consensus 376 ~~~~~p~L~~a~~vl~~Vh~~FF~~~D~~l~~ri~ev~~e~~~~~~~~~pDV~n~~~~e~~~~~~~g~~~~~~~ 449 (911)
....++.|...+++|++||..||...| +....+..+||+. ++.|-+-.++-||...+..
T Consensus 393 e~~~D~~L~~~~kvl~~vH~~ff~~~~--------------~~~e~~~~~Dvr~-~i~~~~~~v~~~~~~vfSg 451 (635)
T KOG0323|consen 393 ESDEDGELANLLKVLKPVHKGFFAKYD--------------EVEETLESPDVRL-LIPELRTKVLKGSQIVFSG 451 (635)
T ss_pred ccccchhHHHHhhhhcccchhhhhccc--------------cccccccCCChhh-hhhhhhhHHhhccceeecc
Confidence 344457899999999999999998865 2234456899999 6677766668888887643
No 98
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=94.97 E-value=0.084 Score=53.16 Aligned_cols=82 Identities=12% Similarity=0.082 Sum_probs=47.2
Q ss_pred EEeeCcChhhHHHHHhhhccccEEEEEEeCCcHH---------HHHHHHHhhCCCCCccccccCCCceEeccCC-Ccc--
Q 002537 259 LVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERD---------YALEMWRLLDPESNLINTKELLDRIVCVKSG-SRK-- 326 (911)
Q Consensus 259 ~vKLRPgv~eLr~FL~a~~sk~FElyVyTmG~R~---------YA~~I~rlLDP~g~lFg~~~l~~RIisresg-~~K-- 326 (911)
|..+-||+.+++..|+ .+-|.+.|.|++... +...+.++|+--|-.+ .-+++-+.+ ..|
T Consensus 40 ~~~~~pgv~e~L~~Lk---~~G~~l~I~TN~~~~~~~~~~~~~~~~~i~~~l~~~gl~~------~~ii~~~~~~~~KP~ 110 (166)
T TIGR01664 40 WRFLYPEIPAKLQELD---DEGYKIVIFTNQSGIGRGKLSAESFKNKIEAFLEKLKVPI------QVLAATHAGLYRKPM 110 (166)
T ss_pred eEEecCCHHHHHHHHH---HCCCEEEEEeCCcccccCcccHHHHHHHHHHHHHHcCCCE------EEEEecCCCCCCCCc
Confidence 3345589999888886 678999999998874 3233334444333222 233433222 112
Q ss_pred --chhhhccCCC--CCCcEEEEEcCCc
Q 002537 327 --SLFNVFQDGT--CHPKMALVIDDRL 349 (911)
Q Consensus 327 --sL~~lfp~~~--~~~~mvVIIDDR~ 349 (911)
.+..++.... ++++-+++|+|+.
T Consensus 111 p~~~~~~~~~~~~~~~~~~~v~VGD~~ 137 (166)
T TIGR01664 111 TGMWEYLQSQYNSPIKMTRSFYVGDAA 137 (166)
T ss_pred cHHHHHHHHHcCCCCCchhcEEEECCC
Confidence 2333333222 5677899999985
No 99
>KOG1817 consensus Ribonuclease [RNA processing and modification]
Probab=94.81 E-value=0.086 Score=60.77 Aligned_cols=70 Identities=19% Similarity=0.315 Sum_probs=54.3
Q ss_pred CChHHHHHHHHHhcCCc------eeEeecCCCCCCCCCCCcEEEEEEECCEEEceeecCCHHHHHHHHHHHHHHHHH
Q 002537 837 MGSVSALKELCMTEGLG------VVFQQQPPSSANSVQKDEVYAQVEIDGQVLGKGIGSTWDEAKMQVFLLDIQNFL 907 (911)
Q Consensus 837 ~NyIglLNELCqkegl~------v~f~~~~~~~sgg~h~~eF~~qVeIgGk~yg~G~GsTKKEAKqqAAklAl~kl~ 907 (911)
-.++.-|...|-....+ +.++-+ ..-.|+.+.+.|.+-|-.+|++++.|+|+|-|.|-+.||+.||+.+.
T Consensus 427 ndpkskLqq~cl~~rys~~~epdip~y~V-~~~~gpa~~r~y~Vavyf~gkrlat~~G~nik~Ae~rAA~~ALe~~~ 502 (533)
T KOG1817|consen 427 NDPKSKLQQCCLTLRYSLGGEPDIPLYKV-LGAKGPANDRNYKVAVYFKGKRLATGVGSNIKQAEMRAAMQALENLK 502 (533)
T ss_pred cCcHHHHHHHHHHHhcccCCCCCCceEEE-ecccCCCCCCceEEEEEECCEEEeeccCchHhHHHHHHHHHHHHHHH
Confidence 35677888887544433 333333 12247778899999999999999999999999999999999999875
No 100
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=94.67 E-value=0.053 Score=59.52 Aligned_cols=81 Identities=16% Similarity=0.142 Sum_probs=49.4
Q ss_pred CcChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccCCCceEeccCCCccchhhhccCCCCCCcEE
Q 002537 263 RPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSGSRKSLFNVFQDGTCHPKMA 342 (911)
Q Consensus 263 RPgv~eLr~FL~a~~sk~FElyVyTmG~R~YA~~I~rlLDP~g~lFg~~~l~~RIisresg~~KsL~~lfp~~~~~~~mv 342 (911)
.|++.+++..|+ ..-+-+.|||+..+..|.++++. ....|+..+.|.-+.+........+..+.......+.-+
T Consensus 33 ~~~~~e~L~~L~---~~Gi~lai~S~n~~~~a~~~l~~---~~~~~~~~~~f~~~~~~~~pk~~~i~~~~~~l~i~~~~~ 106 (320)
T TIGR01686 33 HKTLQEKIKTLK---KQGFLLALASKNDEDDAKKVFER---RKDFILQAEDFDARSINWGPKSESLRKIAKKLNLGTDSF 106 (320)
T ss_pred HHHHHHHHHHHH---hCCCEEEEEcCCCHHHHHHHHHh---CccccCcHHHeeEEEEecCchHHHHHHHHHHhCCCcCcE
Confidence 478888666665 56689999999999999998875 112333333333433322222233444433222567889
Q ss_pred EEEcCCc
Q 002537 343 LVIDDRL 349 (911)
Q Consensus 343 VIIDDR~ 349 (911)
|+|||+.
T Consensus 107 vfidD~~ 113 (320)
T TIGR01686 107 LFIDDNP 113 (320)
T ss_pred EEECCCH
Confidence 9999964
No 101
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=94.59 E-value=0.12 Score=57.71 Aligned_cols=41 Identities=17% Similarity=0.112 Sum_probs=34.7
Q ss_pred EeeCcChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCC
Q 002537 260 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDP 303 (911)
Q Consensus 260 vKLRPgv~eLr~FL~a~~sk~FElyVyTmG~R~YA~~I~rlLDP 303 (911)
++++||+.+++..|+ +.-|.+.|+|.|...++..+.+.|+=
T Consensus 180 l~l~pGa~elL~~Lk---~~G~~~aIvSgg~~~~~~~l~~~Lgl 220 (322)
T PRK11133 180 LPLMPGLTELVLKLQ---ALGWKVAIASGGFTYFADYLRDKLRL 220 (322)
T ss_pred CCCChhHHHHHHHHH---HcCCEEEEEECCcchhHHHHHHHcCC
Confidence 457899999888887 56789999999999999988887643
No 102
>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []. It includes plant phosphatases with homology to the haloacid dehalogenase (HAD) superfamily [, ]. PHOSPHO1 is a phosphoethanolamine/phosphocholine phosphatase [], while PHOSPHO2 has high activity toward pyridoxal 5'-phosphate (PLP), and it is active at much lower level toward pyrophosphate, phosphoethanolamine (PEA)and phosphocholine (PCho) []. ; GO: 0016791 phosphatase activity
Probab=94.58 E-value=0.18 Score=54.09 Aligned_cols=51 Identities=12% Similarity=0.322 Sum_probs=38.9
Q ss_pred eeCcChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccCCCceEe
Q 002537 261 RLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVC 319 (911)
Q Consensus 261 KLRPgv~eLr~FL~a~~sk~FElyVyTmG~R~YA~~I~rlLDP~g~lFg~~~l~~RIis 319 (911)
.+.||..++.+||. +....||++|-..|+--|-+.|++. .|..+++..|++
T Consensus 71 p~~pgm~~~l~~l~-~~~~~~~~~IiSDaNs~fI~~iL~~-------~gl~~~f~~I~T 121 (234)
T PF06888_consen 71 PIDPGMKELLRFLA-KNQRGFDLIIISDANSFFIETILEH-------HGLRDCFSEIFT 121 (234)
T ss_pred CCCccHHHHHHHHH-hcCCCceEEEEeCCcHhHHHHHHHh-------CCCccccceEEe
Confidence 34589999888885 4467999999999999999999988 443444445544
No 103
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=94.55 E-value=0.12 Score=55.40 Aligned_cols=39 Identities=8% Similarity=-0.015 Sum_probs=31.3
Q ss_pred EEeeCcChhhHHHHHhhhccccEEEEEEeC----CcHHHHHHHHHh
Q 002537 259 LVRLRPAWEDLRSYLTARGRKRFEVYVCTM----AERDYALEMWRL 300 (911)
Q Consensus 259 ~vKLRPgv~eLr~FL~a~~sk~FElyVyTm----G~R~YA~~I~rl 300 (911)
+.++-||+.+++.+|+ ++-++|+|.|+ ..+.++..+.+.
T Consensus 112 ~a~p~~Ga~elL~~L~---~~G~~I~iVTnR~~~k~~~t~~~Llk~ 154 (237)
T PRK11009 112 FSIPKEVARQLIDMHV---KRGDSIYFITGRTATKTETVSKTLADD 154 (237)
T ss_pred cCcchHHHHHHHHHHH---HCCCeEEEEeCCCCcccHHHHHHHHHH
Confidence 3556678999788776 67899999998 567789988885
No 104
>KOG3109 consensus Haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=94.50 E-value=0.045 Score=58.53 Aligned_cols=82 Identities=21% Similarity=0.324 Sum_probs=60.8
Q ss_pred EEeeCcChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccCCCceEeccCC-----------Cccc
Q 002537 259 LVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSG-----------SRKS 327 (911)
Q Consensus 259 ~vKLRPgv~eLr~FL~a~~sk~FElyVyTmG~R~YA~~I~rlLDP~g~lFg~~~l~~RIisresg-----------~~Ks 327 (911)
|=+|-|-+. ||++|- .+.+++ .++||||-|..|..+++. +|.+++|+.|+|-+.. ..+.
T Consensus 96 lq~LkPD~~-LRnlLL-~l~~r~-k~~FTNa~k~HA~r~Lk~-------LGieDcFegii~~e~~np~~~~~vcKP~~~a 165 (244)
T KOG3109|consen 96 LQDLKPDPV-LRNLLL-SLKKRR-KWIFTNAYKVHAIRILKK-------LGIEDCFEGIICFETLNPIEKTVVCKPSEEA 165 (244)
T ss_pred HhhcCCCHH-HHHHHH-hCcccc-EEEecCCcHHHHHHHHHH-------hChHHhccceeEeeccCCCCCceeecCCHHH
Confidence 333555553 677998 777777 999999999999999999 8999999999998532 2244
Q ss_pred hhhhccCCC-CCCcEEEEEcCCcc
Q 002537 328 LFNVFQDGT-CHPKMALVIDDRLK 350 (911)
Q Consensus 328 L~~lfp~~~-~~~~mvVIIDDR~d 350 (911)
.+.++.-.+ .+++-++++||+..
T Consensus 166 fE~a~k~agi~~p~~t~FfDDS~~ 189 (244)
T KOG3109|consen 166 FEKAMKVAGIDSPRNTYFFDDSER 189 (244)
T ss_pred HHHHHHHhCCCCcCceEEEcCchh
Confidence 454443222 34789999999863
No 105
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=94.31 E-value=0.017 Score=57.71 Aligned_cols=46 Identities=17% Similarity=0.185 Sum_probs=37.5
Q ss_pred EeeCcChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccc
Q 002537 260 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLIN 309 (911)
Q Consensus 260 vKLRPgv~eLr~FL~a~~sk~FElyVyTmG~R~YA~~I~rlLDP~g~lFg 309 (911)
.+++|++.+++..|+ ++-+.++|.|.+.+.|+..+++.|.=+ .+|+
T Consensus 86 ~~~~~~~~~~l~~l~---~~g~~v~ivS~s~~~~v~~~~~~lg~~-~~~~ 131 (202)
T TIGR01490 86 SILYPEARDLIRWHK---AEGHTIVLVSASLTILVKPLARILGID-NAIG 131 (202)
T ss_pred HhccHHHHHHHHHHH---HCCCEEEEEeCCcHHHHHHHHHHcCCc-ceEe
Confidence 457899999777776 566899999999999999999987654 3566
No 106
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=94.21 E-value=0.042 Score=57.34 Aligned_cols=76 Identities=16% Similarity=0.160 Sum_probs=51.5
Q ss_pred EeeCcChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccCCCceEeccCC---------Cccchhh
Q 002537 260 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSG---------SRKSLFN 330 (911)
Q Consensus 260 vKLRPgv~eLr~FL~a~~sk~FElyVyTmG~R~YA~~I~rlLDP~g~lFg~~~l~~RIisresg---------~~KsL~~ 330 (911)
+++.||+.+++..|+ ++..-+-+.|...|.-+..+++. .+..++|+=|++.++. ..+..++
T Consensus 85 ~~~~pGv~~~l~~L~---~~~i~~avaS~s~~~~~~~~L~~-------~gl~~~f~~~v~~~dv~~~KP~Pd~yL~Aa~~ 154 (221)
T COG0637 85 LKPIPGVVELLEQLK---ARGIPLAVASSSPRRAAERVLAR-------LGLLDYFDVIVTADDVARGKPAPDIYLLAAER 154 (221)
T ss_pred CCCCccHHHHHHHHH---hcCCcEEEecCChHHHHHHHHHH-------ccChhhcchhccHHHHhcCCCCCHHHHHHHHH
Confidence 466799999777776 33388999999999999988877 3333444455554321 2344444
Q ss_pred hccCCCCCCcEEEEEcCCc
Q 002537 331 VFQDGTCHPKMALVIDDRL 349 (911)
Q Consensus 331 lfp~~~~~~~mvVIIDDR~ 349 (911)
+- ..+.-+|+|+|+.
T Consensus 155 Lg----v~P~~CvviEDs~ 169 (221)
T COG0637 155 LG----VDPEECVVVEDSP 169 (221)
T ss_pred cC----CChHHeEEEecch
Confidence 31 3578899999974
No 107
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=94.21 E-value=0.04 Score=52.91 Aligned_cols=86 Identities=16% Similarity=0.179 Sum_probs=56.6
Q ss_pred eeCcChhhHHHHHhhhccccEEEEEEeCC-cHHHHHHHHHhhCCCCCccccccCCCceEeccC-CCccchhhhccCCC--
Q 002537 261 RLRPAWEDLRSYLTARGRKRFEVYVCTMA-ERDYALEMWRLLDPESNLINTKELLDRIVCVKS-GSRKSLFNVFQDGT-- 336 (911)
Q Consensus 261 KLRPgv~eLr~FL~a~~sk~FElyVyTmG-~R~YA~~I~rlLDP~g~lFg~~~l~~RIisres-g~~KsL~~lfp~~~-- 336 (911)
++.||+.+++..|+ +.-|.+.|.|++ .+.|+..+++.+.+-+.+.+....|+-+++.+. ...+.+..+.....
T Consensus 29 ~~~~gv~e~L~~Lk---~~g~~l~i~Sn~~~~~~~~~~l~~~~~~~~i~~l~~~f~~~~~~~~~pkp~~~~~a~~~lg~~ 105 (128)
T TIGR01681 29 VTIKEIRDKLQTLK---KNGFLLALASYNDDPHVAYELLKIFEDFGIIFPLAEYFDPLTIGYWLPKSPRLVEIALKLNGV 105 (128)
T ss_pred HHHHHHHHHHHHHH---HCCeEEEEEeCCCCHHHHHHHHHhccccccchhhHhhhhhhhhcCCCcHHHHHHHHHHHhcCC
Confidence 56799999888886 567999999999 999999999987642222112344455555422 22222333322222
Q ss_pred CCCcEEEEEcCCc
Q 002537 337 CHPKMALVIDDRL 349 (911)
Q Consensus 337 ~~~~mvVIIDDR~ 349 (911)
..++-+++|||+.
T Consensus 106 ~~p~~~l~igDs~ 118 (128)
T TIGR01681 106 LKPKSILFVDDRP 118 (128)
T ss_pred CCcceEEEECCCH
Confidence 5678999999985
No 108
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=94.11 E-value=0.071 Score=53.76 Aligned_cols=80 Identities=23% Similarity=0.267 Sum_probs=55.8
Q ss_pred EEeeCcChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccCCCceEeccC-CCcc----chhhhcc
Q 002537 259 LVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKS-GSRK----SLFNVFQ 333 (911)
Q Consensus 259 ~vKLRPgv~eLr~FL~a~~sk~FElyVyTmG~R~YA~~I~rlLDP~g~lFg~~~l~~RIisres-g~~K----sL~~lfp 333 (911)
.++++||+.+++..|+ +. |.+.|.||+.+.++..+++. ++...+|+.|++.++ +..| -+..++.
T Consensus 95 ~~~~~~g~~~~L~~l~---~~-~~~~i~Sn~~~~~~~~~l~~-------~~l~~~fd~i~~~~~~~~~KP~~~~~~~~~~ 163 (224)
T TIGR02254 95 GHQLLPGAFELMENLQ---QK-FRLYIVTNGVRETQYKRLRK-------SGLFPFFDDIFVSEDAGIQKPDKEIFNYALE 163 (224)
T ss_pred cCeeCccHHHHHHHHH---hc-CcEEEEeCCchHHHHHHHHH-------CCcHhhcCEEEEcCccCCCCCCHHHHHHHHH
Confidence 3588999999777775 34 99999999999999998887 455556778887643 2111 1222222
Q ss_pred CC-CCCCcEEEEEcCCc
Q 002537 334 DG-TCHPKMALVIDDRL 349 (911)
Q Consensus 334 ~~-~~~~~mvVIIDDR~ 349 (911)
.. ...++-+|+|+|+.
T Consensus 164 ~~~~~~~~~~v~igD~~ 180 (224)
T TIGR02254 164 RMPKFSKEEVLMIGDSL 180 (224)
T ss_pred HhcCCCchheEEECCCc
Confidence 11 25678899999984
No 109
>PRK11590 hypothetical protein; Provisional
Probab=94.05 E-value=0.096 Score=53.95 Aligned_cols=40 Identities=15% Similarity=0.169 Sum_probs=32.9
Q ss_pred EeeCcChhhHH-HHHhhhccccEEEEEEeCCcHHHHHHHHHhhC
Q 002537 260 VRLRPAWEDLR-SYLTARGRKRFEVYVCTMAERDYALEMWRLLD 302 (911)
Q Consensus 260 vKLRPgv~eLr-~FL~a~~sk~FElyVyTmG~R~YA~~I~rlLD 302 (911)
++++|++.+++ ..|+ +.-+.+.|.|++.+.|+..+++.|.
T Consensus 94 ~~~~pga~e~L~~~l~---~~G~~l~IvSas~~~~~~~il~~l~ 134 (211)
T PRK11590 94 VTAFPVVQERLTTYLL---SSDADVWLITGSPQPLVEQVYFDTP 134 (211)
T ss_pred CcCCccHHHHHHHHHH---hCCCEEEEEeCCcHHHHHHHHHHcc
Confidence 46689999966 4554 5689999999999999999998743
No 110
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=93.66 E-value=0.085 Score=54.99 Aligned_cols=80 Identities=18% Similarity=0.074 Sum_probs=56.3
Q ss_pred EeeCcChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccCCCceEeccC-CCccc----hhhhccC
Q 002537 260 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKS-GSRKS----LFNVFQD 334 (911)
Q Consensus 260 vKLRPgv~eLr~FL~a~~sk~FElyVyTmG~R~YA~~I~rlLDP~g~lFg~~~l~~RIisres-g~~Ks----L~~lfp~ 334 (911)
+++.||+.+++..|+ ++-|-++|.|++.+.++..+++. ++...+|+.|++.++ +..|- +..++..
T Consensus 92 ~~~~~g~~e~L~~Lk---~~g~~~~i~Tn~~~~~~~~~l~~-------~~l~~~fd~iv~s~~~~~~KP~p~~~~~~~~~ 161 (224)
T PRK14988 92 AVLREDTVPFLEALK---ASGKRRILLTNAHPHNLAVKLEH-------TGLDAHLDLLLSTHTFGYPKEDQRLWQAVAEH 161 (224)
T ss_pred CCcCCCHHHHHHHHH---hCCCeEEEEeCcCHHHHHHHHHH-------CCcHHHCCEEEEeeeCCCCCCCHHHHHHHHHH
Confidence 578899999988887 55789999999999999998877 344455667777643 22222 2222221
Q ss_pred CCCCCcEEEEEcCCc
Q 002537 335 GTCHPKMALVIDDRL 349 (911)
Q Consensus 335 ~~~~~~mvVIIDDR~ 349 (911)
....++-+|+|||+.
T Consensus 162 ~~~~p~~~l~igDs~ 176 (224)
T PRK14988 162 TGLKAERTLFIDDSE 176 (224)
T ss_pred cCCChHHEEEEcCCH
Confidence 225678899999985
No 111
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=93.48 E-value=0.32 Score=60.47 Aligned_cols=200 Identities=16% Similarity=0.138 Sum_probs=120.0
Q ss_pred chHHHHHHHHhcCCCeEEEEeeec-CCCceEEEEEEECCEEE-EEeecCCHHHHHHHHHHHHHHHHHhhhcccccCCCCC
Q 002537 707 PSGVLQDIAMKCGTKVEFRPALVA-STELQFSIEAWFAGEKI-GEGIGRTRREAQRQAAEGSIKHLANVYMLRVKSDSGS 784 (911)
Q Consensus 707 ~KT~LQE~~Qk~~~~~~Y~~v~~~-~Hd~~FtveV~I~Ge~~-G~G~GkSKKEAEq~AAk~AL~~L~~~~~~~~~p~~~~ 784 (911)
-|..|-.|+-|+.+.+.|.+-.+. .....|.++|.+.+-.+ +.|--..||.|+..||+.-++-|.-.-+-..++.+..
T Consensus 3 ~k~fly~~~~k~~~~p~~d~~~~~~~~rqrf~ce~~~~~~~~~~~~~stnkKda~knac~dfv~ylvr~Gk~n~~d~p~~ 82 (1282)
T KOG0921|consen 3 VKEFLYAWLGKNKYGPTYDIRSEGRKGRQRFLCEVRVEGFGYTAVGNSTNKKDAATNAAQDFCQYLVREGKMQQSDIPTL 82 (1282)
T ss_pred HHHHHHHHHhhhccCcceehhhhcccchhheeeeeeccCCcceeeecccccchhhHHHHHHHHHHhhhhccccccCCccc
Confidence 477888899999988999976553 44568999999888655 3444445999999999999998864333222222221
Q ss_pred CC---CCCCCcCCccC-ccccc--ccccCCCCCCCCCC---------------------------CCCCCCCCCCCCccc
Q 002537 785 GH---GDGSRFSNANE-NCFMG--EINSFGGQPLAKDE---------------------------SLSSEPSKLVDPRLE 831 (911)
Q Consensus 785 ~~---~D~s~~~~~~e-N~~~~--d~ns~~~~~~~~~~---------------------------~stSe~s~~~~~~~~ 831 (911)
+. .|++-.-..++ .++.+ +.+++-..++...+ .+.++.+.+ +.-..
T Consensus 83 ~s~s~~~~~~l~~~~~a~~~~~~~~g~~~q~~~qd~p~~~~p~~~d~~~~~~g~~~~~~~qkae~~~e~ea~d~-~~~ih 161 (1282)
T KOG0921|consen 83 TSSSLEASSTWQDSETATMFCGGEDGNSFQESQQPIPQKRFPWSNNAYQRNEGTHEQYITQKAEEIAESETVDL-NAEIH 161 (1282)
T ss_pred ccccccCcccccccccccccccccccccCCCCCCCcccccccccccccccCCCCCchhHHHHhhhhhhhhhhcc-Ccccc
Confidence 11 11211100000 01111 11111111110001 011111100 00011
Q ss_pred CCCCCCChHHHHHHHHHhcCCceeEeecCCCCCCCCCCCcEEEE-----EEECCEEEceeecCCHHHHHHHHHHHHHHHH
Q 002537 832 GSKKLMGSVSALKELCMTEGLGVVFQQQPPSSANSVQKDEVYAQ-----VEIDGQVLGKGIGSTWDEAKMQVFLLDIQNF 906 (911)
Q Consensus 832 ~s~~~~NyIglLNELCqkegl~v~f~~~~~~~sgg~h~~eF~~q-----VeIgGk~yg~G~GsTKKEAKqqAAklAl~kl 906 (911)
+.-...|-=-.||++-|++.+..+|.... .++.|.+.|... -.++-++..++.|++||.|-..-|.....+|
T Consensus 162 g~wt~eN~K~~ln~~~q~~~~~~~y~~~~---~g~~~~~s~~~e~si~v~~~~~~~~~~~~gsnkk~~~~~ca~s~vrqm 238 (1282)
T KOG0921|consen 162 GNWTMENAKKALNEYLQKMRIQDNYKYTI---VGPEHVRSFEAEASIYVPQLNRNLVAKETGSNKKVAEASCALSLVRQL 238 (1282)
T ss_pred CCCCcchhHHHHhHHHhhhhhccccceee---cCCccccchhhhHHHhhhhhchhhhhhhccccceecCcchHHHHHHHH
Confidence 22345677789999999999999998873 477788887743 3456777788999999999888888888888
Q ss_pred Hhhc
Q 002537 907 LALN 910 (911)
Q Consensus 907 ~~~~ 910 (911)
+-||
T Consensus 239 ~hl~ 242 (1282)
T KOG0921|consen 239 FHLN 242 (1282)
T ss_pred HHHh
Confidence 7765
No 112
>PF03368 Dicer_dimer: Dicer dimerisation domain; InterPro: IPR005034 This domain is found in members of the Dicer protein family of dsRNA nucleases. This entry represents a dsRNA-binding domain. RNA interference (RNAi) is an ancient gene-silencing process that plays a fundamental role in diverse eukaryotic functions including viral defence, chromatin remodelling, genome rearrangement, developmental timing, brain morphogenesis, and stem cell maintenance. All RNAi pathways require the multidomain ribonuclease Dicer, which initiates RNAi by cleaving double-stranded RNA (dsRNA) substrates into small fragments ~25 nuleotides in length. A typical eukaryotic Dicer consists of a helicase domain (PDOC51192 from PROSITEDOC), a domain of unknown function, and a PAZ domain (PDOC50821 from PROSITEDOC) at the amino (N)-terminus as well as two ribonuclease III domains (PDOC00448 from PROSITEDOC) and a dsRNA-binding domain (dsRBD) (PDOC50137 from PROSITEDOC) at the carboxy (C)-terminus. The domain of unknown function of ~100 amino acids is predicted to adopt the canonical alpha-beta-beta-beta-alpha-fold found in all dsRBDs [, , , ].; GO: 0016891 endoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2KOU_A.
Probab=93.45 E-value=0.081 Score=48.73 Aligned_cols=62 Identities=16% Similarity=0.093 Sum_probs=36.0
Q ss_pred HHHHHHHHHhcC------CceeEeecCCCCCCCCCCCcEEEEEEECC-----EEEceeecCCHHHHHHHHHHHHHHHHHh
Q 002537 840 VSALKELCMTEG------LGVVFQQQPPSSANSVQKDEVYAQVEIDG-----QVLGKGIGSTWDEAKMQVFLLDIQNFLA 908 (911)
Q Consensus 840 IglLNELCqkeg------l~v~f~~~~~~~sgg~h~~eF~~qVeIgG-----k~yg~G~GsTKKEAKqqAAklAl~kl~~ 908 (911)
|++||+||++-. +...|.-.. .+ ..|.|.|..=. .+.|. .-.||+.||+.||-+|+.+|++
T Consensus 2 i~lL~~yC~~Lp~d~~~~~~P~~~~~~----~~---~~~~c~v~LP~~~pi~~i~g~-~~~sk~~AK~sAAf~Ac~~L~~ 73 (90)
T PF03368_consen 2 ISLLNRYCSTLPSDSFTNLKPEFEIEK----IG---SGFICTVILPINSPIRSIEGP-PMRSKKLAKRSAAFEACKKLHE 73 (90)
T ss_dssp HHHHHHHHTTSSS-TT--SS-EEEEEE---------G-EEEEEE--TT-SS--EEEE---SSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCCccCCceEEEEE----cC---CcEEEEEECCCCCCCCeEEcc-ccccHHHHHHHHHHHHHHHHHH
Confidence 789999998422 112222210 00 13566555311 13444 5689999999999999999997
Q ss_pred h
Q 002537 909 L 909 (911)
Q Consensus 909 ~ 909 (911)
.
T Consensus 74 ~ 74 (90)
T PF03368_consen 74 A 74 (90)
T ss_dssp H
T ss_pred c
Confidence 5
No 113
>PRK09449 dUMP phosphatase; Provisional
Probab=91.95 E-value=0.24 Score=50.52 Aligned_cols=84 Identities=13% Similarity=0.140 Sum_probs=56.3
Q ss_pred EeeCcChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccCCCceEeccC-CCccc----hhhhccC
Q 002537 260 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKS-GSRKS----LFNVFQD 334 (911)
Q Consensus 260 vKLRPgv~eLr~FL~a~~sk~FElyVyTmG~R~YA~~I~rlLDP~g~lFg~~~l~~RIisres-g~~Ks----L~~lfp~ 334 (911)
+++.||+.+++..|+ +.|-+.|.||+.+.++..+++. ++...+|+.|++.++ +..|. +..++..
T Consensus 94 ~~~~~g~~~~L~~L~----~~~~~~i~Tn~~~~~~~~~l~~-------~~l~~~fd~v~~~~~~~~~KP~p~~~~~~~~~ 162 (224)
T PRK09449 94 CTPLPGAVELLNALR----GKVKMGIITNGFTELQQVRLER-------TGLRDYFDLLVISEQVGVAKPDVAIFDYALEQ 162 (224)
T ss_pred CccCccHHHHHHHHH----hCCeEEEEeCCcHHHHHHHHHh-------CChHHHcCEEEEECccCCCCCCHHHHHHHHHH
Confidence 567899999777774 3499999999999999998877 455556678887643 22221 2222222
Q ss_pred CCC-CCcEEEEEcCCc--ccCCC
Q 002537 335 GTC-HPKMALVIDDRL--KVWDD 354 (911)
Q Consensus 335 ~~~-~~~mvVIIDDR~--dVW~~ 354 (911)
..+ .++-+++|+|+. ||=..
T Consensus 163 ~~~~~~~~~~~vgD~~~~Di~~A 185 (224)
T PRK09449 163 MGNPDRSRVLMVGDNLHSDILGG 185 (224)
T ss_pred cCCCCcccEEEEcCCcHHHHHHH
Confidence 113 336799999984 66433
No 114
>PF05152 DUF705: Protein of unknown function (DUF705); InterPro: IPR007827 This family contains uncharacterised baculoviral proteins.
Probab=91.03 E-value=0.52 Score=52.33 Aligned_cols=102 Identities=17% Similarity=0.224 Sum_probs=60.5
Q ss_pred cChhhHHHHHhhhccccE-EEEEEeCCcHHHHHHHHHhhCCCCCccccccCCCceEeccCCCccchhhhccCCCCCCcEE
Q 002537 264 PAWEDLRSYLTARGRKRF-EVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSGSRKSLFNVFQDGTCHPKMA 342 (911)
Q Consensus 264 Pgv~eLr~FL~a~~sk~F-ElyVyTmG~R~YA~~I~rlLDP~g~lFg~~~l~~RIisresg~~KsL~~lfp~~~~~~~mv 342 (911)
|.+.+ .|. +..+++ -|+++.-|+++|+..-++.+ +.+++|+=|||...... ....-
T Consensus 145 ~~v~~---sL~-~Lk~~g~vLvLWSyG~~eHV~~sl~~~-------~L~~~Fd~ii~~G~~~~------------~~~~~ 201 (297)
T PF05152_consen 145 PAVYD---SLR-ELKEQGCVLVLWSYGNREHVRHSLKEL-------KLEGYFDIIICGGNKAG------------EYNSR 201 (297)
T ss_pred hHHHH---HHH-HHHHcCCEEEEecCCCHHHHHHHHHHh-------CCccccEEEEeCCccCC------------cCCcc
Confidence 34555 444 444444 99999999999999999995 44456678999743321 11222
Q ss_pred EEEcCCcccCCCCCCCCeEEeccccCccCchhhhc--ccCchHHHHHHHHhhhcccchhch
Q 002537 343 LVIDDRLKVWDDKDQPRVHVVPAFAPYYAPQAEAN--NAIPVLCVARNIACNVRGGFFKEF 401 (911)
Q Consensus 343 VIIDDR~dVW~~~~~~~v~vV~~Y~pf~~~q~e~~--~~~p~L~~a~~vl~~Vh~~FF~~~ 401 (911)
+++|.+. +.+.+..+ |+....... -+.| -+++..|.+.-=.|||.+
T Consensus 202 ~~~d~~~--------~~~f~~~~---FylDv~~~~~LPKSP--rVVL~yL~k~gvny~Kti 249 (297)
T PF05152_consen 202 VIVDRQY--------KVIFVSKP---FYLDVTNVNNLPKSP--RVVLWYLRKKGVNYFKTI 249 (297)
T ss_pred ceeeccc--------ceEEeccc---eEEeCCcCCCCCCCC--eehHHHHHHcCCceeeeE
Confidence 5566543 23333333 333332221 2233 457888888777888865
No 115
>PF14954 LIX1: Limb expression 1
Probab=90.54 E-value=0.46 Score=50.84 Aligned_cols=65 Identities=20% Similarity=0.207 Sum_probs=47.5
Q ss_pred CCCChHHHHHHHHHhc-C--------CceeEeecCCCCCCCCCCCcEEEEEEE-CCEEEce-eecCCHHHHHHHHHHHHH
Q 002537 835 KLMGSVSALKELCMTE-G--------LGVVFQQQPPSSANSVQKDEVYAQVEI-DGQVLGK-GIGSTWDEAKMQVFLLDI 903 (911)
Q Consensus 835 ~~~NyIglLNELCqke-g--------l~v~f~~~~~~~sgg~h~~eF~~qVeI-gGk~yg~-G~GsTKKEAKqqAAklAl 903 (911)
...|.|.+|+||=|++ . -.|.|+.. ++..+-|+|-|++ ||--||. -...||.|||+.|||.||
T Consensus 19 ~~vnvV~~LqeFWq~Kq~r~a~~~~~~lv~YEs~------ps~~ppyVcyVTLPGGSCFGnfq~C~tkAEARR~AAKiAL 92 (252)
T PF14954_consen 19 GDVNVVEALQEFWQMKQSRGADLKSEALVVYESV------PSPSPPYVCYVTLPGGSCFGNFQNCPTKAEARRSAAKIAL 92 (252)
T ss_pred ccchHHHHHHHHHHHHHhccccCCCCCeeeeecc------CCCCCCeEEEEeCCCCCccCccccCCcHHHHHhhhHHHHH
Confidence 4679999999998543 2 23444444 3333458888887 6666665 567899999999999999
Q ss_pred HH
Q 002537 904 QN 905 (911)
Q Consensus 904 ~k 905 (911)
.+
T Consensus 93 mN 94 (252)
T PF14954_consen 93 MN 94 (252)
T ss_pred HH
Confidence 64
No 116
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=90.00 E-value=0.35 Score=47.44 Aligned_cols=78 Identities=18% Similarity=0.210 Sum_probs=51.1
Q ss_pred EeeCcChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccCCCceEeccCC-Ccc----chhhhccC
Q 002537 260 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSG-SRK----SLFNVFQD 334 (911)
Q Consensus 260 vKLRPgv~eLr~FL~a~~sk~FElyVyTmG~R~YA~~I~rlLDP~g~lFg~~~l~~RIisresg-~~K----sL~~lfp~ 334 (911)
+++.||+.+++++|+ +..|.+.|.|++ .++..+++. ++...+++-|++.++. ..| .+..+...
T Consensus 87 ~~~~~g~~~~l~~l~---~~g~~i~i~S~~--~~~~~~l~~-------~~l~~~f~~v~~~~~~~~~kp~~~~~~~~~~~ 154 (185)
T TIGR02009 87 AEVLPGIENFLKRLK---KKGIAVGLGSSS--KNADRILAK-------LGLTDYFDAIVDADEVKEGKPHPETFLLAAEL 154 (185)
T ss_pred CCCCcCHHHHHHHHH---HcCCeEEEEeCc--hhHHHHHHH-------cChHHHCCEeeehhhCCCCCCChHHHHHHHHH
Confidence 578899999888886 457899999998 777777776 4444455677765432 111 12222222
Q ss_pred CCCCCcEEEEEcCCc
Q 002537 335 GTCHPKMALVIDDRL 349 (911)
Q Consensus 335 ~~~~~~mvVIIDDR~ 349 (911)
....++-+|+|+|+.
T Consensus 155 ~~~~~~~~v~IgD~~ 169 (185)
T TIGR02009 155 LGVSPNECVVFEDAL 169 (185)
T ss_pred cCCCHHHeEEEeCcH
Confidence 224567788999984
No 117
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=89.95 E-value=0.6 Score=53.86 Aligned_cols=79 Identities=15% Similarity=0.283 Sum_probs=56.3
Q ss_pred EEeeCcChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccCCCceEeccCCC--cc--chhhhccC
Q 002537 259 LVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSGS--RK--SLFNVFQD 334 (911)
Q Consensus 259 ~vKLRPgv~eLr~FL~a~~sk~FElyVyTmG~R~YA~~I~rlLDP~g~lFg~~~l~~RIisresg~--~K--sL~~lfp~ 334 (911)
.+++.||+.+++.+|+ ++.+.+.|.|++.+.|+..+++. ++....|+.|+|.++.. .| -+......
T Consensus 328 ~~~l~pG~~e~L~~Lk---~~g~~l~IvS~~~~~~~~~~l~~-------~~l~~~f~~i~~~d~v~~~~kP~~~~~al~~ 397 (459)
T PRK06698 328 KGALYPNVKEIFTYIK---ENNCSIYIASNGLTEYLRAIVSY-------YDLDQWVTETFSIEQINSLNKSDLVKSILNK 397 (459)
T ss_pred CCCcCCCHHHHHHHHH---HCCCeEEEEeCCchHHHHHHHHH-------CCcHhhcceeEecCCCCCCCCcHHHHHHHHh
Confidence 3578899999999997 56799999999999999999988 44455666788875431 11 12222211
Q ss_pred CCCCCcEEEEEcCCc
Q 002537 335 GTCHPKMALVIDDRL 349 (911)
Q Consensus 335 ~~~~~~mvVIIDDR~ 349 (911)
..++-+|+|.|+.
T Consensus 398 --l~~~~~v~VGDs~ 410 (459)
T PRK06698 398 --YDIKEAAVVGDRL 410 (459)
T ss_pred --cCcceEEEEeCCH
Confidence 2345688888885
No 118
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=89.09 E-value=0.58 Score=49.60 Aligned_cols=85 Identities=13% Similarity=0.109 Sum_probs=53.5
Q ss_pred EEeeCcChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCC--CCCccccccCCCceEeccCCCccchhhhccCCC
Q 002537 259 LVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDP--ESNLINTKELLDRIVCVKSGSRKSLFNVFQDGT 336 (911)
Q Consensus 259 ~vKLRPgv~eLr~FL~a~~sk~FElyVyTmG~R~YA~~I~rlLDP--~g~lFg~~~l~~RIisresg~~KsL~~lfp~~~ 336 (911)
..++.|++.++++.|+ ++-|.++|||+|.+.+...+.+.++- -..||. ..|+-+++.+.. ...+..++....
T Consensus 93 ~~~lypgv~e~L~~Lk---~~G~~l~I~Sn~s~~~~~~~~~~~~~~~L~~~f~--~~fd~~~g~KP~-p~~y~~i~~~lg 166 (220)
T TIGR01691 93 TSHLYPDVPPALEAWL---QLGLRLAVYSSGSVPAQKLLFGHSDAGNLTPYFS--GYFDTTVGLKTE-AQSYVKIAGQLG 166 (220)
T ss_pred ccCcCcCHHHHHHHHH---HCCCEEEEEeCCCHHHHHHHHhhccccchhhhcc--eEEEeCcccCCC-HHHHHHHHHHhC
Confidence 3568899999777776 56799999999999999888876531 112343 122223333322 122333332222
Q ss_pred CCCcEEEEEcCCc
Q 002537 337 CHPKMALVIDDRL 349 (911)
Q Consensus 337 ~~~~mvVIIDDR~ 349 (911)
..++-+++|+|+.
T Consensus 167 v~p~e~lfVgDs~ 179 (220)
T TIGR01691 167 SPPREILFLSDII 179 (220)
T ss_pred cChhHEEEEeCCH
Confidence 5678899999985
No 119
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=88.37 E-value=2.6 Score=45.44 Aligned_cols=95 Identities=12% Similarity=0.040 Sum_probs=53.5
Q ss_pred cChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccCCCceEecc-CCCc------cc--hhhhccC
Q 002537 264 PAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVK-SGSR------KS--LFNVFQD 334 (911)
Q Consensus 264 Pgv~eLr~FL~a~~sk~FElyVyTmG~R~YA~~I~rlLDP~g~lFg~~~l~~RIisre-sg~~------Ks--L~~lfp~ 334 (911)
|++.++.++|. ++-++++++|.=.........+-|.-.| |. + .++++-|. ++.. |+ ...+-.
T Consensus 123 p~al~l~~~l~---~~G~~Vf~lTGR~e~~r~~T~~nL~~~G--~~--~-~~~LiLR~~~d~~~~~~~yKs~~R~~l~~- 193 (229)
T TIGR01675 123 PEGLKLYQKII---ELGIKIFLLSGRWEELRNATLDNLINAG--FT--G-WKHLILRGLEDSNKTVVTYKSEVRKSLME- 193 (229)
T ss_pred HHHHHHHHHHH---HCCCEEEEEcCCChHHHHHHHHHHHHcC--CC--C-cCeeeecCCCCCCchHhHHHHHHHHHHHh-
Confidence 67777666665 7788999999887766554544443333 22 1 15677664 2222 22 122332
Q ss_pred CCCCCcEEEEEcCCcccCCCCCC-CCeEEeccccCc
Q 002537 335 GTCHPKMALVIDDRLKVWDDKDQ-PRVHVVPAFAPY 369 (911)
Q Consensus 335 ~~~~~~mvVIIDDR~dVW~~~~~-~~v~vV~~Y~pf 369 (911)
..-+.+..|||...=-..... .+....|-.+||
T Consensus 194 --~GYrIv~~iGDq~sDl~G~~~~~RtFKLPNPmYy 227 (229)
T TIGR01675 194 --EGYRIWGNIGDQWSDLLGSPPGRRTFKLPNPMYY 227 (229)
T ss_pred --CCceEEEEECCChHHhcCCCccCceeeCCCCccc
Confidence 134789999998432222222 256666666665
No 120
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=86.64 E-value=1.2 Score=44.87 Aligned_cols=80 Identities=18% Similarity=0.233 Sum_probs=51.6
Q ss_pred EEeeCcChhhHHHHHhhhccccEEEEEEeCC---------------cHHHHHHHHHhhCCCCCccccccCCCceEe----
Q 002537 259 LVRLRPAWEDLRSYLTARGRKRFEVYVCTMA---------------ERDYALEMWRLLDPESNLINTKELLDRIVC---- 319 (911)
Q Consensus 259 ~vKLRPgv~eLr~FL~a~~sk~FElyVyTmG---------------~R~YA~~I~rlLDP~g~lFg~~~l~~RIis---- 319 (911)
.+++-||+.++++.|+ .+-|.++|.||. .+.|+..+++.++-. |. +-++|
T Consensus 27 ~~~~~pgv~e~L~~L~---~~g~~l~IvSN~~g~~~~~~~~~~~~~~~~~~~~~l~~~gl~---fd-----~ii~~~~~~ 95 (161)
T TIGR01261 27 KLRFEKGVIPALLKLK---KAGYKFVMVTNQDGLGTPSFPQADFDGPHNLMLQIFRSQGII---FD-----DVLICPHFP 95 (161)
T ss_pred HeeECCCHHHHHHHHH---HCCCeEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHCCCc---ee-----EEEECCCCC
Confidence 4567799999888887 567999999996 356777777765543 44 34455
Q ss_pred ccC-CCc----cchhhhccCCCCCCcEEEEEcCCc
Q 002537 320 VKS-GSR----KSLFNVFQDGTCHPKMALVIDDRL 349 (911)
Q Consensus 320 res-g~~----KsL~~lfp~~~~~~~mvVIIDDR~ 349 (911)
.++ +.. ..+..++.....+++-+++|+|+.
T Consensus 96 ~~~~~~~KP~~~~~~~~~~~~~~~~~e~l~IGD~~ 130 (161)
T TIGR01261 96 DDNCDCRKPKIKLLEPYLKKNLIDKARSYVIGDRE 130 (161)
T ss_pred CCCCCCCCCCHHHHHHHHHHcCCCHHHeEEEeCCH
Confidence 222 122 223334333235678899999983
No 121
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=86.14 E-value=0.97 Score=49.21 Aligned_cols=87 Identities=16% Similarity=0.147 Sum_probs=54.6
Q ss_pred EeeCcChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccCCCceEeccC-CCcc----chhhhccC
Q 002537 260 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKS-GSRK----SLFNVFQD 334 (911)
Q Consensus 260 vKLRPgv~eLr~FL~a~~sk~FElyVyTmG~R~YA~~I~rlLDP~g~lFg~~~l~~RIisres-g~~K----sL~~lfp~ 334 (911)
+++.||+.+++.+|+ .+.|.+.|.|++.+.++..+++.+.= -.+|. .+. +++.++ +..| -+..++..
T Consensus 143 ~~l~pGv~elL~~L~---~~g~~l~IvTn~~~~~~~~~l~~~~~-~~~~~---~~~-~v~~~~~~~~KP~p~~~~~a~~~ 214 (286)
T PLN02779 143 LPLRPGVLRLMDEAL---AAGIKVAVCSTSNEKAVSKIVNTLLG-PERAQ---GLD-VFAGDDVPKKKPDPDIYNLAAET 214 (286)
T ss_pred CCchhhHHHHHHHHH---HCCCeEEEEeCCCHHHHHHHHHHhcc-ccccC---ceE-EEeccccCCCCCCHHHHHHHHHH
Confidence 578999999888887 56799999999999999998886521 12333 111 233322 1212 22222221
Q ss_pred CCCCCcEEEEEcCCcccCCC
Q 002537 335 GTCHPKMALVIDDRLKVWDD 354 (911)
Q Consensus 335 ~~~~~~mvVIIDDR~dVW~~ 354 (911)
....++-+++|+|+..=+..
T Consensus 215 ~~~~p~~~l~IGDs~~Di~a 234 (286)
T PLN02779 215 LGVDPSRCVVVEDSVIGLQA 234 (286)
T ss_pred hCcChHHEEEEeCCHHhHHH
Confidence 12567789999999754433
No 122
>KOG3120 consensus Predicted haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=85.89 E-value=0.77 Score=49.62 Aligned_cols=35 Identities=17% Similarity=0.160 Sum_probs=31.4
Q ss_pred cChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHh
Q 002537 264 PAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRL 300 (911)
Q Consensus 264 Pgv~eLr~FL~a~~sk~FElyVyTmG~R~YA~~I~rl 300 (911)
||+-+|.+|++ +.-. ||+-|..-++.-+-+++++.
T Consensus 87 Pgmv~lik~~a-k~g~-~eliIVSDaNsfFIe~~Lea 121 (256)
T KOG3120|consen 87 PGMVRLIKSAA-KLGC-FELIIVSDANSFFIEEILEA 121 (256)
T ss_pred ccHHHHHHHHH-hCCC-ceEEEEecCchhHHHHHHHH
Confidence 89999999998 5444 99999999999999999998
No 123
>PF03368 Dicer_dimer: Dicer dimerisation domain; InterPro: IPR005034 This domain is found in members of the Dicer protein family of dsRNA nucleases. This entry represents a dsRNA-binding domain. RNA interference (RNAi) is an ancient gene-silencing process that plays a fundamental role in diverse eukaryotic functions including viral defence, chromatin remodelling, genome rearrangement, developmental timing, brain morphogenesis, and stem cell maintenance. All RNAi pathways require the multidomain ribonuclease Dicer, which initiates RNAi by cleaving double-stranded RNA (dsRNA) substrates into small fragments ~25 nuleotides in length. A typical eukaryotic Dicer consists of a helicase domain (PDOC51192 from PROSITEDOC), a domain of unknown function, and a PAZ domain (PDOC50821 from PROSITEDOC) at the amino (N)-terminus as well as two ribonuclease III domains (PDOC00448 from PROSITEDOC) and a dsRNA-binding domain (dsRBD) (PDOC50137 from PROSITEDOC) at the carboxy (C)-terminus. The domain of unknown function of ~100 amino acids is predicted to adopt the canonical alpha-beta-beta-beta-alpha-fold found in all dsRBDs [, , , ].; GO: 0016891 endoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2KOU_A.
Probab=85.62 E-value=3.7 Score=37.91 Aligned_cols=62 Identities=23% Similarity=0.181 Sum_probs=41.3
Q ss_pred hHHHHHHHHhcC------CCeEEEEeeecCCCceEEEEEEECCE-----EEEEeecCCHHHHHHHHHHHHHHHHHhh
Q 002537 708 SGVLQDIAMKCG------TKVEFRPALVASTELQFSIEAWFAGE-----KIGEGIGRTRREAQRQAAEGSIKHLANV 773 (911)
Q Consensus 708 KT~LQE~~Qk~~------~~~~Y~~v~~~~Hd~~FtveV~I~Ge-----~~G~G~GkSKKEAEq~AAk~AL~~L~~~ 773 (911)
++.|+.||++.. ..+.|.+....+ .|.++|.+=.. ..|. .-+|||.||+.||=.|+..|-+.
T Consensus 2 i~lL~~yC~~Lp~d~~~~~~P~~~~~~~~~---~~~c~v~LP~~~pi~~i~g~-~~~sk~~AK~sAAf~Ac~~L~~~ 74 (90)
T PF03368_consen 2 ISLLNRYCSTLPSDSFTNLKPEFEIEKIGS---GFICTVILPINSPIRSIEGP-PMRSKKLAKRSAAFEACKKLHEA 74 (90)
T ss_dssp HHHHHHHHTTSSS-TT--SS-EEEEEE--G----EEEEEE--TT-SS--EEEE---SSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCCccCCceEEEEEcCC---cEEEEEECCCCCCCCeEEcc-ccccHHHHHHHHHHHHHHHHHHc
Confidence 578999998743 246787654333 78888876432 4444 57899999999999999999763
No 124
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=85.56 E-value=2.4 Score=42.01 Aligned_cols=73 Identities=14% Similarity=0.132 Sum_probs=44.5
Q ss_pred eeCcChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccCCCceEeccCCCccchhhhccCCCCCCc
Q 002537 261 RLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSGSRKSLFNVFQDGTCHPK 340 (911)
Q Consensus 261 KLRPgv~eLr~FL~a~~sk~FElyVyTmG~R~YA~~I~rlLDP~g~lFg~~~l~~RIisresg~~KsL~~lfp~~~~~~~ 340 (911)
.++|+. ..+.|+ .+-+.+.|.|++.+..+..+++.+.-+ .+|. +.+ +....+..+...-..+++
T Consensus 30 ~~~~~~--~i~~Lk---~~G~~i~IvTn~~~~~~~~~l~~~gi~-~~~~---------~~~-~k~~~~~~~~~~~~~~~~ 93 (154)
T TIGR01670 30 NVRDGY--GIRCAL---KSGIEVAIITGRKAKLVEDRCKTLGIT-HLYQ---------GQS-NKLIAFSDILEKLALAPE 93 (154)
T ss_pred echhHH--HHHHHH---HCCCEEEEEECCCCHHHHHHHHHcCCC-EEEe---------ccc-chHHHHHHHHHHcCCCHH
Confidence 444544 456786 577999999999999999999885433 2232 111 122223333322124567
Q ss_pred EEEEEcCCc
Q 002537 341 MALVIDDRL 349 (911)
Q Consensus 341 mvVIIDDR~ 349 (911)
-++.|.|+.
T Consensus 94 ~~~~vGDs~ 102 (154)
T TIGR01670 94 NVAYIGDDL 102 (154)
T ss_pred HEEEECCCH
Confidence 788888874
No 125
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=84.11 E-value=2.3 Score=44.68 Aligned_cols=30 Identities=30% Similarity=0.297 Sum_probs=20.9
Q ss_pred EEEeCCcceeecccccchHHHHHHHHhhhcc
Q 002537 145 IVFDLDETLIVANTMRSFEDRIEALLRKIST 175 (911)
Q Consensus 145 lV~DLDeTLi~A~t~~~~e~ri~~l~~~~~~ 175 (911)
+++||||||+.... .--+..+++++++...
T Consensus 2 i~~DlDGTLl~~~~-~i~~~~~~~i~~l~~~ 31 (256)
T TIGR00099 2 IFIDLDGTLLNDDH-TISPSTKEALAKLREK 31 (256)
T ss_pred EEEeCCCCCCCCCC-ccCHHHHHHHHHHHHC
Confidence 78999999997532 1125667778777653
No 126
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=82.50 E-value=0.49 Score=46.34 Aligned_cols=73 Identities=16% Similarity=0.079 Sum_probs=49.5
Q ss_pred EeeCcChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccCCCceEeccC-CCccc----hhhhccC
Q 002537 260 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKS-GSRKS----LFNVFQD 334 (911)
Q Consensus 260 vKLRPgv~eLr~FL~a~~sk~FElyVyTmG~R~YA~~I~rlLDP~g~lFg~~~l~~RIisres-g~~Ks----L~~lfp~ 334 (911)
+++.||+.+ +|+ .+.|.||+.+.+...+++.+ +...+++.|+|.++ +..|- ...++..
T Consensus 89 ~~~~~g~~~---~L~-------~~~i~Tn~~~~~~~~~l~~~-------~l~~~fd~v~~~~~~~~~KP~p~~f~~~~~~ 151 (175)
T TIGR01493 89 LPPWPDSAA---ALA-------RVAILSNASHWAFDQFAQQA-------GLPWYFDRAFSVDTVRAYKPDPVVYELVFDT 151 (175)
T ss_pred CCCCCchHH---HHH-------HHhhhhCCCHHHHHHHHHHC-------CCHHHHhhhccHhhcCCCCCCHHHHHHHHHH
Confidence 467899988 775 28899999999999998884 33444567887754 32221 1222222
Q ss_pred CCCCCcEEEEEcCCc
Q 002537 335 GTCHPKMALVIDDRL 349 (911)
Q Consensus 335 ~~~~~~mvVIIDDR~ 349 (911)
..+.++-+++|+|+.
T Consensus 152 ~~~~p~~~l~vgD~~ 166 (175)
T TIGR01493 152 VGLPPDRVLMVAAHQ 166 (175)
T ss_pred HCCCHHHeEeEecCh
Confidence 226778899999983
No 127
>PLN02811 hydrolase
Probab=80.15 E-value=2.5 Score=43.65 Aligned_cols=79 Identities=20% Similarity=0.130 Sum_probs=50.9
Q ss_pred EeeCcChhhHHHHHhhhccccEEEEEEeCCcHHHHHH-HHHhhCCCCCccccccCCCceEecc--CC-C--------ccc
Q 002537 260 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALE-MWRLLDPESNLINTKELLDRIVCVK--SG-S--------RKS 327 (911)
Q Consensus 260 vKLRPgv~eLr~FL~a~~sk~FElyVyTmG~R~YA~~-I~rlLDP~g~lFg~~~l~~RIisre--sg-~--------~Ks 327 (911)
+++.||+.+++++|+ ..-|.+.|-|++.+.+... +.+. ++..++|+.|+|.+ +- . .+.
T Consensus 77 ~~l~~gv~e~l~~L~---~~g~~~~i~S~~~~~~~~~~~~~~-------~~l~~~f~~i~~~~~~~~~~~KP~p~~~~~a 146 (220)
T PLN02811 77 SDLMPGAERLVRHLH---AKGIPIAIATGSHKRHFDLKTQRH-------GELFSLMHHVVTGDDPEVKQGKPAPDIFLAA 146 (220)
T ss_pred CCCCccHHHHHHHHH---HCCCcEEEEeCCchhhHHHHHccc-------HHHHhhCCEEEECChhhccCCCCCcHHHHHH
Confidence 467899999999987 4579999999999876543 2221 12223556888876 21 1 122
Q ss_pred hhhhccCCCCCCcEEEEEcCCc
Q 002537 328 LFNVFQDGTCHPKMALVIDDRL 349 (911)
Q Consensus 328 L~~lfp~~~~~~~mvVIIDDR~ 349 (911)
++++- .+...++-+|+|+|+.
T Consensus 147 ~~~~~-~~~~~~~~~v~IgDs~ 167 (220)
T PLN02811 147 ARRFE-DGPVDPGKVLVFEDAP 167 (220)
T ss_pred HHHhC-CCCCCccceEEEeccH
Confidence 33331 1114568899999986
No 128
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=79.98 E-value=3.3 Score=40.41 Aligned_cols=39 Identities=28% Similarity=0.273 Sum_probs=31.4
Q ss_pred eeCcChhhHHHHHhhhccccEEEEEEeCCcH---------------HHHHHHHHhhC
Q 002537 261 RLRPAWEDLRSYLTARGRKRFEVYVCTMAER---------------DYALEMWRLLD 302 (911)
Q Consensus 261 KLRPgv~eLr~FL~a~~sk~FElyVyTmG~R---------------~YA~~I~rlLD 302 (911)
++.||+.+++.+|+ .+-|.+.|.||+.+ .++..+++.++
T Consensus 27 ~~~~g~~~~l~~Lk---~~g~~~~I~Sn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 80 (147)
T TIGR01656 27 QLRPGAVPALLTLR---AAGYTVVVVTNQSGIGRGYFSAEAFRAPNGRVLELLRQLG 80 (147)
T ss_pred EEcCChHHHHHHHH---HCCCEEEEEeCCCcccCCcCCHHHHHHHHHHHHHHHHhCC
Confidence 67899999888887 78899999999985 56666666654
No 129
>TIGR01680 Veg_Stor_Prot vegetative storage protein. The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.
Probab=79.63 E-value=8.6 Score=42.76 Aligned_cols=74 Identities=12% Similarity=0.094 Sum_probs=41.3
Q ss_pred cChhhHHHHHhhhccccEEEEEEeCCcHHHH-HHHHHhhCCCCCccccccCCCceEeccCC-Cc-------cch--hhhc
Q 002537 264 PAWEDLRSYLTARGRKRFEVYVCTMAERDYA-LEMWRLLDPESNLINTKELLDRIVCVKSG-SR-------KSL--FNVF 332 (911)
Q Consensus 264 Pgv~eLr~FL~a~~sk~FElyVyTmG~R~YA-~~I~rlLDP~g~lFg~~~l~~RIisresg-~~-------KsL--~~lf 332 (911)
|+..+|.++|. ++-|.|++.|.=....- ..+..|.+ .|--. .++++-|..+ .. |+- ..+-
T Consensus 148 p~al~ly~~l~---~~G~kIf~VSgR~e~~r~aT~~NL~k-aGy~~-----~~~LiLR~~~D~~~~~av~yKs~~R~~li 218 (275)
T TIGR01680 148 PETLKNYNKLV---SLGFKIIFLSGRLKDKQAVTEANLKK-AGYHT-----WEKLILKDPQDNSAENAVEYKTAARAKLI 218 (275)
T ss_pred hHHHHHHHHHH---HCCCEEEEEeCCchhHHHHHHHHHHH-cCCCC-----cceeeecCCCCCccchhHHHHHHHHHHHH
Confidence 56777666765 67788888887665433 34444433 22211 1566666332 11 322 3333
Q ss_pred cCCCCCCcEEEEEcCCc
Q 002537 333 QDGTCHPKMALVIDDRL 349 (911)
Q Consensus 333 p~~~~~~~mvVIIDDR~ 349 (911)
. ..-+.+..|||..
T Consensus 219 ~---eGYrIv~~iGDq~ 232 (275)
T TIGR01680 219 Q---EGYNIVGIIGDQW 232 (275)
T ss_pred H---cCceEEEEECCCH
Confidence 3 2347899999984
No 130
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=79.51 E-value=2 Score=46.19 Aligned_cols=81 Identities=14% Similarity=0.173 Sum_probs=58.5
Q ss_pred EEeeCcChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccCCCceEecc--------CCC------
Q 002537 259 LVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVK--------SGS------ 324 (911)
Q Consensus 259 ~vKLRPgv~eLr~FL~a~~sk~FElyVyTmG~R~YA~~I~rlLDP~g~lFg~~~l~~RIisre--------sg~------ 324 (911)
-..+.|++.+++..|. +.-+.+.|.|+..+.++..+++.|+-.+.+|. .|++.+ .+.
T Consensus 185 ~~~~~~~~~~~l~~l~---~~g~~i~i~T~r~~~~~~~~l~~l~~~~~~f~------~i~~~~~~~~~~~~~~~~kp~p~ 255 (300)
T PHA02530 185 EDKPNPMVVELVKMYK---AAGYEIIVVSGRDGVCEEDTVEWLRQTDIWFD------DLIGRPPDMHFQREQGDKRPDDV 255 (300)
T ss_pred cCCCChhHHHHHHHHH---hCCCEEEEEeCCChhhHHHHHHHHHHcCCchh------hhhCCcchhhhcccCCCCCCcHH
Confidence 3467899999777775 45799999999999999999999988887776 344433 111
Q ss_pred --ccchhhhccCCCCCCcEEEEEcCCccc
Q 002537 325 --RKSLFNVFQDGTCHPKMALVIDDRLKV 351 (911)
Q Consensus 325 --~KsL~~lfp~~~~~~~mvVIIDDR~dV 351 (911)
.+.|.++.. ..++-+|.|||+..+
T Consensus 256 ~~~~~l~~~~~---~~~~~~~~vgD~~~d 281 (300)
T PHA02530 256 VKEEIFWEKIA---PKYDVLLAVDDRDQV 281 (300)
T ss_pred HHHHHHHHHhc---cCceEEEEEcCcHHH
Confidence 133444321 145889999999765
No 131
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=77.80 E-value=2 Score=43.73 Aligned_cols=28 Identities=39% Similarity=0.493 Sum_probs=18.7
Q ss_pred EEEeCCcceeecccccch-HHHHHHHHhhhc
Q 002537 145 IVFDLDETLIVANTMRSF-EDRIEALLRKIS 174 (911)
Q Consensus 145 lV~DLDeTLi~A~t~~~~-e~ri~~l~~~~~ 174 (911)
+++||||||+... +.+ +..+++|++|..
T Consensus 1 i~~DlDGTLl~~~--~~i~~~~~~al~~l~~ 29 (225)
T TIGR01482 1 IASDIDGTLTDPN--RAINESALEAIRKAES 29 (225)
T ss_pred CeEeccCccCCCC--cccCHHHHHHHHHHHH
Confidence 5899999999543 333 444666766654
No 132
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=77.53 E-value=1.8 Score=43.42 Aligned_cols=29 Identities=34% Similarity=0.313 Sum_probs=22.7
Q ss_pred EEEeCCcceeecccccchHHHHHHHHhhhc
Q 002537 145 IVFDLDETLIVANTMRSFEDRIEALLRKIS 174 (911)
Q Consensus 145 lV~DLDeTLi~A~t~~~~e~ri~~l~~~~~ 174 (911)
|++||||||+.....= -+..+++|++|..
T Consensus 1 i~~DlDGTLl~~~~~i-~~~~~~al~~l~~ 29 (254)
T PF08282_consen 1 IFSDLDGTLLNSDGKI-SPETIEALKELQE 29 (254)
T ss_dssp EEEECCTTTCSTTSSS-CHHHHHHHHHHHH
T ss_pred cEEEECCceecCCCee-CHHHHHHHHhhcc
Confidence 6899999999865542 3777888888875
No 133
>smart00559 Ku78 Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen. This is a single stranded DNA- and ATP-depedent helicase that has a role in chromosome translocation. This is a domain of unknown function C-terminal to its von Willebrand factor A domain, that also occurs in bacterial hypothetical proteins.
Probab=77.00 E-value=11 Score=37.23 Aligned_cols=86 Identities=15% Similarity=0.157 Sum_probs=60.3
Q ss_pred ccccceEEEeecCCcCCCCcchhhhhcccCceeEeeccCCC----ccHHHHHHHHHhhhcccceEeec--CCCceeEEEE
Q 002537 35 KVFDEIRISYFSEASERCPPLAVLHTITASGICFKMESKSS----DNIQLHLLHSSCIRENKTAVMPL--GLTEELHLVA 108 (911)
Q Consensus 35 ~~~~~~~i~~~~~~~e~~~pl~~lh~ia~~~~~~~~~~~~~----~~~~l~~lh~~c~~e~ktav~~~--~~~~elhlva 108 (911)
+-.+.|+|.+|-+.+ ..|+ .|.+. ...|-. +... ...++..|+.+|.+.+|.||++. ..+.+-+|||
T Consensus 33 ~~~~~l~ilgF~~~~-~i~~---~~~~~--~s~~i~-P~~~~~~~s~~a~~aL~~am~~~~~~aiar~v~r~~~~p~l~a 105 (140)
T smart00559 33 KSEPGLELLGFKPLS-SLPP---YYFLR--PSYFLV-PDDKSVIGSTKAFSALVEALLETDKIAIARYTLRTKSNPRLVA 105 (140)
T ss_pred cCCCeEEEEeecChH-HCCH---hHccC--CcEEEe-eCCcccchhHHHHHHHHHHHHhcCCEEEEEEEEcCCCCCEEEE
Confidence 346899999999887 3444 24443 223322 3222 38899999999999999999998 5466799999
Q ss_pred eeecCCCCCccEEEEEeec
Q 002537 109 MYSRNNEKQYPCFWAFSVG 127 (911)
Q Consensus 109 ~~s~~~~~~~p~F~~~~v~ 127 (911)
+.....+....|||....+
T Consensus 106 L~P~~~~~~~~~l~~~~Lp 124 (140)
T smart00559 106 LRPYDEEDDGEGLVLVQLP 124 (140)
T ss_pred EEeeecccCCCcEEEEecC
Confidence 9887654444577766554
No 134
>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25). The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....
Probab=74.38 E-value=2.4 Score=45.12 Aligned_cols=80 Identities=15% Similarity=0.153 Sum_probs=41.3
Q ss_pred cChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccCCCceEeccCCC--c------cc--hhhhcc
Q 002537 264 PAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSGS--R------KS--LFNVFQ 333 (911)
Q Consensus 264 Pgv~eLr~FL~a~~sk~FElyVyTmG~R~YA~~I~rlLDP~g~lFg~~~l~~RIisresg~--~------Ks--L~~lfp 333 (911)
|+..+|..++. +.-++|++.|+=....-..-++-|.-.| |. . .+.++-+..++ . |+ ...|-.
T Consensus 118 p~a~~l~~~~~---~~G~~V~~iT~R~~~~r~~T~~nL~~~G--~~--~-~~~l~lr~~~~~~~~~~~~yK~~~r~~i~~ 189 (229)
T PF03767_consen 118 PGALELYNYAR---SRGVKVFFITGRPESQREATEKNLKKAG--FP--G-WDHLILRPDKDPSKKSAVEYKSERRKEIEK 189 (229)
T ss_dssp TTHHHHHHHHH---HTTEEEEEEEEEETTCHHHHHHHHHHHT--TS--T-BSCGEEEEESSTSS------SHHHHHHHHH
T ss_pred HHHHHHHHHHH---HCCCeEEEEecCCchhHHHHHHHHHHcC--CC--c-cchhccccccccccccccccchHHHHHHHH
Confidence 67778666665 6779999999755443233333333233 22 1 13444442111 1 21 222222
Q ss_pred CCCCCCcEEEEEcCCcccCCC
Q 002537 334 DGTCHPKMALVIDDRLKVWDD 354 (911)
Q Consensus 334 ~~~~~~~mvVIIDDR~dVW~~ 354 (911)
..-+.++.|+|..+=...
T Consensus 190 ---~Gy~Ii~~iGD~~~D~~~ 207 (229)
T PF03767_consen 190 ---KGYRIIANIGDQLSDFSG 207 (229)
T ss_dssp ---TTEEEEEEEESSGGGCHC
T ss_pred ---cCCcEEEEeCCCHHHhhc
Confidence 123788889998765544
No 135
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=73.71 E-value=23 Score=38.15 Aligned_cols=42 Identities=21% Similarity=0.205 Sum_probs=36.4
Q ss_pred eeCcChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCC
Q 002537 261 RLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPES 305 (911)
Q Consensus 261 KLRPgv~eLr~FL~a~~sk~FElyVyTmG~R~YA~~I~rlLDP~g 305 (911)
+|-||++||-++|+ .+--.+|+-.-|=|..|.-|+..|+=+.
T Consensus 88 ~lT~Gi~eLv~~L~---~~~~~v~liSGGF~~~i~~Va~~Lgi~~ 129 (227)
T KOG1615|consen 88 TLTPGIRELVSRLH---ARGTQVYLISGGFRQLIEPVAEQLGIPK 129 (227)
T ss_pred ccCCCHHHHHHHHH---HcCCeEEEEcCChHHHHHHHHHHhCCcH
Confidence 45689999999998 5667899999999999999999988553
No 136
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=73.01 E-value=1.8 Score=45.63 Aligned_cols=14 Identities=50% Similarity=0.520 Sum_probs=12.5
Q ss_pred ceeEEEeCCcceee
Q 002537 142 CLGIVFDLDETLIV 155 (911)
Q Consensus 142 ~L~lV~DLDeTLi~ 155 (911)
++.|+.||||||+.
T Consensus 1 ~~li~tDlDGTLl~ 14 (249)
T TIGR01485 1 RLLLVSDLDNTLVD 14 (249)
T ss_pred CeEEEEcCCCcCcC
Confidence 47899999999995
No 137
>PF06941 NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C); InterPro: IPR010708 This family consists of several 5' nucleotidase, deoxy (Pyrimidine), and cytosolic type C (NT5C) proteins. 5'(3')-deoxyribonucleotidase is a ubiquitous enzyme in mammalian cells whose physiological function is not known [].; GO: 0016791 phosphatase activity; PDB: 1Z4M_A 1Q92_A 1Q91_A 1Z4J_A 1Z4I_A 1Z4Q_A 1Z4K_A 2JAW_A 1MH9_A 1Z4L_A ....
Probab=71.84 E-value=15 Score=37.38 Aligned_cols=16 Identities=31% Similarity=0.380 Sum_probs=11.8
Q ss_pred cceeEEEeCCcceeec
Q 002537 141 RCLGIVFDLDETLIVA 156 (911)
Q Consensus 141 r~L~lV~DLDeTLi~A 156 (911)
|+|-|.+|+||||...
T Consensus 1 ~~i~I~iDiDgVLad~ 16 (191)
T PF06941_consen 1 RKIRIAIDIDGVLADF 16 (191)
T ss_dssp --EEEEEESBTTTB-H
T ss_pred CCcEEEEECCCCCccc
Confidence 6788999999999843
No 138
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=69.08 E-value=6.5 Score=39.55 Aligned_cols=82 Identities=17% Similarity=0.136 Sum_probs=50.4
Q ss_pred eeCcChhhHHHHHhhhccccEEEEEEeCCc-HHHHHHHHHhhCCCCCccccccCCCceEeccCCCccchhhhccCCCCCC
Q 002537 261 RLRPAWEDLRSYLTARGRKRFEVYVCTMAE-RDYALEMWRLLDPESNLINTKELLDRIVCVKSGSRKSLFNVFQDGTCHP 339 (911)
Q Consensus 261 KLRPgv~eLr~FL~a~~sk~FElyVyTmG~-R~YA~~I~rlLDP~g~lFg~~~l~~RIisresg~~KsL~~lfp~~~~~~ 339 (911)
++-|++.+++++|+ ..-+.++|.||+. +..+..+++.++-.- +++ ..+.. ..-+..++......+
T Consensus 43 ~~~pgv~e~L~~Lk---~~g~~l~I~Sn~~~~~~~~~~~~~~gl~~-~~~---------~~KP~-p~~~~~~l~~~~~~~ 108 (170)
T TIGR01668 43 EAYPALRDWIEELK---AAGRKLLIVSNNAGEQRAKAVEKALGIPV-LPH---------AVKPP-GCAFRRAHPEMGLTS 108 (170)
T ss_pred CcChhHHHHHHHHH---HcCCEEEEEeCCchHHHHHHHHHHcCCEE-EcC---------CCCCC-hHHHHHHHHHcCCCH
Confidence 44589999777776 3458999999999 788888877654210 111 11221 122333333222566
Q ss_pred cEEEEEcCCc--ccCCCCC
Q 002537 340 KMALVIDDRL--KVWDDKD 356 (911)
Q Consensus 340 ~mvVIIDDR~--dVW~~~~ 356 (911)
+-+++|+|+. |+-..+.
T Consensus 109 ~~~l~IGDs~~~Di~aA~~ 127 (170)
T TIGR01668 109 EQVAVVGDRLFTDVMGGNR 127 (170)
T ss_pred HHEEEECCcchHHHHHHHH
Confidence 7899999995 7876653
No 139
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=66.19 E-value=4.6 Score=42.53 Aligned_cols=29 Identities=31% Similarity=0.178 Sum_probs=21.5
Q ss_pred EEEeCCcceeecccccchHHHHHHHHhhhcc
Q 002537 145 IVFDLDETLIVANTMRSFEDRIEALLRKIST 175 (911)
Q Consensus 145 lV~DLDeTLi~A~t~~~~e~ri~~l~~~~~~ 175 (911)
++|||||||+.... ..+..+++++++...
T Consensus 2 i~~DlDGTLl~~~~--~~~~~~~ai~~l~~~ 30 (225)
T TIGR02461 2 IFTDLDGTLLPPGY--EPGPAREALEELKDL 30 (225)
T ss_pred EEEeCCCCCcCCCC--CchHHHHHHHHHHHC
Confidence 78999999998544 356678888776543
No 140
>PTZ00174 phosphomannomutase; Provisional
Probab=66.03 E-value=9.1 Score=40.60 Aligned_cols=31 Identities=23% Similarity=0.295 Sum_probs=21.0
Q ss_pred ceeEEEeCCcceeecccccch-HHHHHHHHhhhc
Q 002537 142 CLGIVFDLDETLIVANTMRSF-EDRIEALLRKIS 174 (911)
Q Consensus 142 ~L~lV~DLDeTLi~A~t~~~~-e~ri~~l~~~~~ 174 (911)
.-.|++||||||+... +.+ +..+++|+.+..
T Consensus 5 ~klia~DlDGTLL~~~--~~is~~~~~ai~~l~~ 36 (247)
T PTZ00174 5 KTILLFDVDGTLTKPR--NPITQEMKDTLAKLKS 36 (247)
T ss_pred CeEEEEECcCCCcCCC--CCCCHHHHHHHHHHHH
Confidence 4468999999999653 222 445677766554
No 141
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=65.74 E-value=5.1 Score=41.01 Aligned_cols=29 Identities=24% Similarity=0.387 Sum_probs=20.4
Q ss_pred eEEEeCCcceeecccccch-HHHHHHHHhhhc
Q 002537 144 GIVFDLDETLIVANTMRSF-EDRIEALLRKIS 174 (911)
Q Consensus 144 ~lV~DLDeTLi~A~t~~~~-e~ri~~l~~~~~ 174 (911)
.|++||||||+... +.+ +..+++|+++..
T Consensus 5 li~~DlDGTLl~~~--~~i~~~~~~al~~l~~ 34 (230)
T PRK01158 5 AIAIDIDGTITDKD--RRLSLKAVEAIRKAEK 34 (230)
T ss_pred EEEEecCCCcCCCC--CccCHHHHHHHHHHHH
Confidence 57899999999543 222 567777777653
No 142
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=65.44 E-value=8.3 Score=40.62 Aligned_cols=80 Identities=9% Similarity=0.053 Sum_probs=46.3
Q ss_pred EeeCcChhhHHHHHhhhccccEEEEEEeCCcHHHHH--HHHHhhCCCCCccccccCCCceEeccCCCccchhhhccCCCC
Q 002537 260 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYAL--EMWRLLDPESNLINTKELLDRIVCVKSGSRKSLFNVFQDGTC 337 (911)
Q Consensus 260 vKLRPgv~eLr~FL~a~~sk~FElyVyTmG~R~YA~--~I~rlLDP~g~lFg~~~l~~RIisresg~~KsL~~lfp~~~~ 337 (911)
.++-||+.+++..|+ +.-+.++|.||++|..+. +.++-+.-+.. .++-|++........|.........
T Consensus 23 ~~~~pga~e~L~~L~---~~G~~~~ivTN~~~~~~~~~~~L~~~gl~~~------~~~~Ii~s~~~~~~~l~~~~~~~~~ 93 (242)
T TIGR01459 23 NHTYPGAVQNLNKII---AQGKPVYFVSNSPRNIFSLHKTLKSLGINAD------LPEMIISSGEIAVQMILESKKRFDI 93 (242)
T ss_pred CccCccHHHHHHHHH---HCCCEEEEEeCCCCChHHHHHHHHHCCCCcc------ccceEEccHHHHHHHHHhhhhhccC
Confidence 345699999888886 567899999999998776 44454332211 3457777543212223332221112
Q ss_pred CCcEEEEEcCC
Q 002537 338 HPKMALVIDDR 348 (911)
Q Consensus 338 ~~~mvVIIDDR 348 (911)
.++-+++|.|+
T Consensus 94 ~~~~~~~vGd~ 104 (242)
T TIGR01459 94 RNGIIYLLGHL 104 (242)
T ss_pred CCceEEEeCCc
Confidence 34556666664
No 143
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=65.02 E-value=5.1 Score=42.83 Aligned_cols=32 Identities=31% Similarity=0.259 Sum_probs=22.7
Q ss_pred ceeEEEeCCcceeecccccchHHHHHHHHhhhc
Q 002537 142 CLGIVFDLDETLIVANTMRSFEDRIEALLRKIS 174 (911)
Q Consensus 142 ~L~lV~DLDeTLi~A~t~~~~e~ri~~l~~~~~ 174 (911)
...|++||||||+..... .-+..++++++...
T Consensus 7 ~~lI~~DlDGTLL~~~~~-i~~~~~~ai~~l~~ 38 (271)
T PRK03669 7 PLLIFTDLDGTLLDSHTY-DWQPAAPWLTRLRE 38 (271)
T ss_pred CeEEEEeCccCCcCCCCc-CcHHHHHHHHHHHH
Confidence 467889999999975331 23677788877654
No 144
>KOG3792 consensus Transcription factor NFAT, subunit NF90 [General function prediction only]
Probab=64.45 E-value=5.1 Score=49.23 Aligned_cols=62 Identities=15% Similarity=0.006 Sum_probs=51.4
Q ss_pred CCCchHHHHHHHHhcCCCeEEEEeeec---CCCceEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHH
Q 002537 704 TETPSGVLQDIAMKCGTKVEFRPALVA---STELQFSIEAWFAGEKIGEGIGRTRREAQRQAAEGSIKHL 770 (911)
Q Consensus 704 ~~n~KT~LQE~~Qk~~~~~~Y~~v~~~---~Hd~~FtveV~I~Ge~~G~G~GkSKKEAEq~AAk~AL~~L 770 (911)
.+++...|+|- ....+|++..++ +|+++|..+|.++|.++ .|.|-.||-|+.-||-.|++.+
T Consensus 505 lK~vsd~L~Ek----~rg~k~El~set~~gs~~~R~v~gV~rvG~~a-kG~~~~gd~a~~~a~Lca~~pt 569 (816)
T KOG3792|consen 505 LKLVSDELAEK----RRGDKYELPSETGTGSHDKRFVKGVMRVGILA-KGLLLNGDRAVELALLCAEKPT 569 (816)
T ss_pred hcchhHHHhhh----ccccceecccccCCCCCCceeeeeeeeeehhh-ccccccchHHHHHHHHhccCcc
Confidence 34556777774 555789988774 59999999999999988 9999999999999999887766
No 145
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=64.28 E-value=9.5 Score=42.36 Aligned_cols=38 Identities=18% Similarity=0.307 Sum_probs=33.2
Q ss_pred EeeCcChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHh
Q 002537 260 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRL 300 (911)
Q Consensus 260 vKLRPgv~eLr~FL~a~~sk~FElyVyTmG~R~YA~~I~rl 300 (911)
+++|||+.+++.+|+ ..-..+.|.|.|-+.++..+++.
T Consensus 120 l~l~pG~~efl~~L~---~~GIpv~IvS~G~~~~Ie~vL~~ 157 (277)
T TIGR01544 120 VMLKDGYENFFDKLQ---QHSIPVFIFSAGIGNVLEEVLRQ 157 (277)
T ss_pred CccCcCHHHHHHHHH---HCCCcEEEEeCCcHHHHHHHHHH
Confidence 578999999777776 55689999999999999999995
No 146
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=64.10 E-value=12 Score=45.09 Aligned_cols=38 Identities=13% Similarity=0.092 Sum_probs=27.8
Q ss_pred eCcChhhHHHHHhhhccccEEEEEEeCCcH------------HHHHHHHHhhC
Q 002537 262 LRPAWEDLRSYLTARGRKRFEVYVCTMAER------------DYALEMWRLLD 302 (911)
Q Consensus 262 LRPgv~eLr~FL~a~~sk~FElyVyTmG~R------------~YA~~I~rlLD 302 (911)
+-|++.+++..|. ..-|.|.|+||-.. .++..|++.|+
T Consensus 198 l~pgV~e~L~~L~---~~Gy~IvIvTNQ~gI~~G~~~~~~~~~ki~~iL~~lg 247 (526)
T TIGR01663 198 IFPEIPEKLKELE---ADGFKICIFTNQGGIARGKINADDFKAKIEAIVAKLG 247 (526)
T ss_pred cccCHHHHHHHHH---HCCCEEEEEECCcccccCcccHHHHHHHHHHHHHHcC
Confidence 3488988777776 67799999999665 45666666654
No 147
>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase. A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.
Probab=62.50 E-value=9.6 Score=43.48 Aligned_cols=60 Identities=17% Similarity=0.180 Sum_probs=44.0
Q ss_pred EEEeeCcChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhh-CCCCCccccccCCCceEec
Q 002537 258 VLVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLL-DPESNLINTKELLDRIVCV 320 (911)
Q Consensus 258 ~~vKLRPgv~eLr~FL~a~~sk~FElyVyTmG~R~YA~~I~rlL-DP~g~lFg~~~l~~RIisr 320 (911)
-||+.-|++.+++..|+ +.-..+.|.||+.+.|++.+++.| ++....=+-.++|+-||+.
T Consensus 181 ~yv~~~pgl~elL~~Lr---~~G~klfLvTNS~~~yt~~im~~l~g~~~~~~~w~~yFD~IIt~ 241 (343)
T TIGR02244 181 KYVLRDPKLPLFLSKLK---EHGKKLFLLTNSDYDYTDKGMKYLLGPFLGEHDWRDYFDVVIVD 241 (343)
T ss_pred HHhccchhHHHHHHHHH---HCCCeEEEEeCCCHHHHHHHHHHhhCCcccccchHhhCcEEEeC
Confidence 38888999999888887 456788999999999999999996 6322111122455567654
No 148
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=62.34 E-value=38 Score=36.91 Aligned_cols=25 Identities=24% Similarity=0.278 Sum_probs=18.5
Q ss_pred cchhhhccCCCCCCcEEEEEcCCcc
Q 002537 326 KSLFNVFQDGTCHPKMALVIDDRLK 350 (911)
Q Consensus 326 KsL~~lfp~~~~~~~mvVIIDDR~d 350 (911)
..|..+|......++-+++|||+.+
T Consensus 165 ~~L~~fL~~~~~~pk~IIfIDD~~~ 189 (252)
T PF11019_consen 165 EVLKYFLDKINQSPKKIIFIDDNKE 189 (252)
T ss_pred HHHHHHHHHcCCCCCeEEEEeCCHH
Confidence 4466666555568899999999865
No 149
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=62.34 E-value=6.4 Score=41.48 Aligned_cols=29 Identities=21% Similarity=0.315 Sum_probs=20.7
Q ss_pred eEEEeCCcceeecccccch-HHHHHHHHhhhc
Q 002537 144 GIVFDLDETLIVANTMRSF-EDRIEALLRKIS 174 (911)
Q Consensus 144 ~lV~DLDeTLi~A~t~~~~-e~ri~~l~~~~~ 174 (911)
.+++||||||+... +.+ +..+++++++..
T Consensus 5 li~~DlDGTLl~~~--~~i~~~~~~ai~~l~~ 34 (270)
T PRK10513 5 LIAIDMDGTLLLPD--HTISPAVKQAIAAARA 34 (270)
T ss_pred EEEEecCCcCcCCC--CccCHHHHHHHHHHHH
Confidence 57899999999653 223 667787777654
No 150
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=62.21 E-value=20 Score=35.96 Aligned_cols=29 Identities=17% Similarity=0.071 Sum_probs=23.6
Q ss_pred EeeCcChhhHHHHHhhhccccEEEEEEeCCcH
Q 002537 260 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAER 291 (911)
Q Consensus 260 vKLRPgv~eLr~FL~a~~sk~FElyVyTmG~R 291 (911)
+++.||+.+++..|+ .+-|.+.|.||+++
T Consensus 28 ~~~~pgv~e~L~~Lk---~~g~~l~I~Tn~~~ 56 (181)
T PRK08942 28 WIPIPGSIEAIARLK---QAGYRVVVATNQSG 56 (181)
T ss_pred eEECCCHHHHHHHHH---HCCCEEEEEeCCcc
Confidence 356799999888886 45699999999974
No 151
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=61.54 E-value=7.5 Score=38.35 Aligned_cols=13 Identities=38% Similarity=0.723 Sum_probs=11.2
Q ss_pred eEEEeCCcceeec
Q 002537 144 GIVFDLDETLIVA 156 (911)
Q Consensus 144 ~lV~DLDeTLi~A 156 (911)
.++|||||||+..
T Consensus 3 ~i~~DiDGTL~~~ 15 (126)
T TIGR01689 3 RLVMDLDNTITLT 15 (126)
T ss_pred EEEEeCCCCcccC
Confidence 6899999999854
No 152
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=60.90 E-value=23 Score=35.61 Aligned_cols=29 Identities=10% Similarity=0.052 Sum_probs=24.1
Q ss_pred EeeCcChhhHHHHHhhhccccEEEEEEeCCcH
Q 002537 260 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAER 291 (911)
Q Consensus 260 vKLRPgv~eLr~FL~a~~sk~FElyVyTmG~R 291 (911)
+++-||+.+++..|+ ++-|.+.|.||+.+
T Consensus 25 ~~~~pgv~e~L~~Lk---~~G~~l~i~TN~~~ 53 (176)
T TIGR00213 25 FEFIDGVIDALRELK---KMGYALVLVTNQSG 53 (176)
T ss_pred eEECCCHHHHHHHHH---HCCCEEEEEeCCcc
Confidence 346699999888887 56799999999985
No 153
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=60.86 E-value=7.9 Score=40.61 Aligned_cols=30 Identities=33% Similarity=0.463 Sum_probs=21.0
Q ss_pred eEEEeCCcceeecccccchHHHHHHHHhhhc
Q 002537 144 GIVFDLDETLIVANTMRSFEDRIEALLRKIS 174 (911)
Q Consensus 144 ~lV~DLDeTLi~A~t~~~~e~ri~~l~~~~~ 174 (911)
.+++||||||+.... .--+..+++++++..
T Consensus 5 li~~DlDGTLl~~~~-~i~~~~~~ai~~~~~ 34 (272)
T PRK10530 5 VIALDLDGTLLTPKK-TILPESLEALARARE 34 (272)
T ss_pred EEEEeCCCceECCCC-ccCHHHHHHHHHHHH
Confidence 578999999996532 123566788877764
No 154
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=60.75 E-value=9.1 Score=43.11 Aligned_cols=66 Identities=18% Similarity=0.164 Sum_probs=37.0
Q ss_pred eEEEeCCcceeecccccchHHHHHHHHhhhccCCCchhh--hhhHHHHHHhhhhHHHHHHhhhcCccccCCeEEE
Q 002537 144 GIVFDLDETLIVANTMRSFEDRIEALLRKISTEVDPQRI--AGMQAEVKRYQDDKNILKQYAENDQVNENGKVIK 216 (911)
Q Consensus 144 ~lV~DLDeTLi~A~t~~~~e~ri~~l~~~~~~~~dP~~~--~~~~~e~kr~q~D~~lL~q~~~~d~v~~~G~~~~ 216 (911)
.|++||||||+...+. ..+..+++|++.... .-|--+ .-...|++.+..... ++.-.+..||-.+.
T Consensus 3 LIftDLDGTLLd~~~~-~~~~a~~aL~~Lk~~-GI~vVlaTGRt~~ev~~l~~~Lg-----l~~p~I~eNGA~I~ 70 (302)
T PRK12702 3 LVLSSLDGSLLDLEFN-SYGAARQALAALERR-SIPLVLYSLRTRAQLEHLCRQLR-----LEHPFICEDGSAIY 70 (302)
T ss_pred EEEEeCCCCCcCCCCc-CCHHHHHHHHHHHHC-CCEEEEEcCCCHHHHHHHHHHhC-----CCCeEEEeCCcEEE
Confidence 5788999999986653 467777777655432 222111 123445655543221 11235677876664
No 155
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=60.71 E-value=3.8 Score=40.19 Aligned_cols=14 Identities=36% Similarity=0.579 Sum_probs=12.0
Q ss_pred eEEEeCCcceeecc
Q 002537 144 GIVFDLDETLIVAN 157 (911)
Q Consensus 144 ~lV~DLDeTLi~A~ 157 (911)
+|+|||||||+...
T Consensus 1 ~viFD~DGTL~D~~ 14 (175)
T TIGR01493 1 AMVFDVYGTLVDVH 14 (175)
T ss_pred CeEEecCCcCcccH
Confidence 58999999999654
No 156
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=60.02 E-value=17 Score=36.15 Aligned_cols=80 Identities=14% Similarity=0.135 Sum_probs=53.5
Q ss_pred EEEeeCcChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccCCCceEecc--CCCccchhhhccCC
Q 002537 258 VLVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVK--SGSRKSLFNVFQDG 335 (911)
Q Consensus 258 ~~vKLRPgv~eLr~FL~a~~sk~FElyVyTmG~R~YA~~I~rlLDP~g~lFg~~~l~~RIisre--sg~~KsL~~lfp~~ 335 (911)
..-.+||++.+++..|+ ..-+.++|+|..++..|..+++.|.-.. ..|+++. ....|.+.++....
T Consensus 124 ~~d~~~~~~~~~l~~L~---~~Gi~~~i~TGD~~~~a~~~~~~lgi~~---------~~v~a~~~~kP~~k~~~~~i~~l 191 (215)
T PF00702_consen 124 LRDPLRPGAKEALQELK---EAGIKVAILTGDNESTASAIAKQLGIFD---------SIVFARVIGKPEPKIFLRIIKEL 191 (215)
T ss_dssp EEEEBHTTHHHHHHHHH---HTTEEEEEEESSEHHHHHHHHHHTTSCS---------EEEEESHETTTHHHHHHHHHHHH
T ss_pred ecCcchhhhhhhhhhhh---ccCcceeeeecccccccccccccccccc---------ccccccccccccchhHHHHHHHH
Confidence 45578999999777776 4568999999999999999999976521 1233333 34444333333221
Q ss_pred CCCCcEEEEEcCCc
Q 002537 336 TCHPKMALVIDDRL 349 (911)
Q Consensus 336 ~~~~~mvVIIDDR~ 349 (911)
...+.-|+.|.|..
T Consensus 192 ~~~~~~v~~vGDg~ 205 (215)
T PF00702_consen 192 QVKPGEVAMVGDGV 205 (215)
T ss_dssp TCTGGGEEEEESSG
T ss_pred hcCCCEEEEEccCH
Confidence 13456788888864
No 157
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=59.86 E-value=11 Score=39.71 Aligned_cols=29 Identities=38% Similarity=0.398 Sum_probs=20.6
Q ss_pred ceeEEEeCCcceeecccccchHHHHHHHHh
Q 002537 142 CLGIVFDLDETLIVANTMRSFEDRIEALLR 171 (911)
Q Consensus 142 ~L~lV~DLDeTLi~A~t~~~~e~ri~~l~~ 171 (911)
.-.|++||||||+..+.. --+..+++|+.
T Consensus 3 ~kli~~DlDGTLl~~~~~-i~~~~~~al~~ 31 (264)
T COG0561 3 IKLLAFDLDGTLLDSNKT-ISPETKEALAR 31 (264)
T ss_pred eeEEEEcCCCCccCCCCc-cCHHHHHHHHH
Confidence 347899999999988764 23556666653
No 158
>PRK10976 putative hydrolase; Provisional
Probab=58.77 E-value=8.3 Score=40.67 Aligned_cols=30 Identities=23% Similarity=0.129 Sum_probs=21.1
Q ss_pred eEEEeCCcceeecccccchHHHHHHHHhhhc
Q 002537 144 GIVFDLDETLIVANTMRSFEDRIEALLRKIS 174 (911)
Q Consensus 144 ~lV~DLDeTLi~A~t~~~~e~ri~~l~~~~~ 174 (911)
.+++||||||+.... .--+..+++++++..
T Consensus 4 li~~DlDGTLl~~~~-~is~~~~~ai~~l~~ 33 (266)
T PRK10976 4 VVASDLDGTLLSPDH-TLSPYAKETLKLLTA 33 (266)
T ss_pred EEEEeCCCCCcCCCC-cCCHHHHHHHHHHHH
Confidence 578999999996642 112567788877764
No 159
>PRK09449 dUMP phosphatase; Provisional
Probab=58.64 E-value=5.5 Score=40.72 Aligned_cols=12 Identities=58% Similarity=0.725 Sum_probs=11.1
Q ss_pred eEEEeCCcceee
Q 002537 144 GIVFDLDETLIV 155 (911)
Q Consensus 144 ~lV~DLDeTLi~ 155 (911)
+|+|||||||+.
T Consensus 5 ~iiFDlDGTLid 16 (224)
T PRK09449 5 WILFDADETLFH 16 (224)
T ss_pred EEEEcCCCchhc
Confidence 689999999996
No 160
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=58.63 E-value=8.8 Score=36.94 Aligned_cols=14 Identities=57% Similarity=0.750 Sum_probs=12.4
Q ss_pred eEEEeCCcceeecc
Q 002537 144 GIVFDLDETLIVAN 157 (911)
Q Consensus 144 ~lV~DLDeTLi~A~ 157 (911)
.||||||+||+...
T Consensus 2 li~~DlD~Tl~~~~ 15 (128)
T TIGR01681 2 VIVFDLDNTLWTGE 15 (128)
T ss_pred EEEEeCCCCCCCCC
Confidence 48999999999885
No 161
>KOG2334 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=58.36 E-value=3.1 Score=48.52 Aligned_cols=66 Identities=24% Similarity=0.264 Sum_probs=55.7
Q ss_pred CCchHHHHHHHHhcCC-CeEEEEeeecCCCceEEEEEEECCEEEEEeec-CCHHHHHHHHHHHHHHHHHh
Q 002537 705 ETPSGVLQDIAMKCGT-KVEFRPALVASTELQFSIEAWFAGEKIGEGIG-RTRREAQRQAAEGSIKHLAN 772 (911)
Q Consensus 705 ~n~KT~LQE~~Qk~~~-~~~Y~~v~~~~Hd~~FtveV~I~Ge~~G~G~G-kSKKEAEq~AAk~AL~~L~~ 772 (911)
.++|..|-.|+-+... .+.|+.+.. .++.|..-+.+.|++|-.+.+ ++||.|+|.||..||.++..
T Consensus 375 ~~~k~~l~~~~~~~~~~~~~ye~~~~--~d~lf~si~~~~~~~~~ssi~~~n~k~aeq~aa~~~l~~s~l 442 (477)
T KOG2334|consen 375 DTPKMVLADLCVKTKANGPVYETVQR--TDKLFSSIATARGQKYNSSIWSPNKKSAEQDAAIVALRKSNL 442 (477)
T ss_pred CCHHHHHHHhhhhhcCCCcchhhhhh--hhhhhHHHhhhhhhhhhccccCcchhhHHHHHHHHHHHhcCc
Confidence 4799999999999874 578876532 688999999999999988875 78999999999999988754
No 162
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=58.31 E-value=8.4 Score=40.93 Aligned_cols=30 Identities=27% Similarity=0.339 Sum_probs=20.7
Q ss_pred eEEEeCCcceeecccccchHHHHHHHHhhhc
Q 002537 144 GIVFDLDETLIVANTMRSFEDRIEALLRKIS 174 (911)
Q Consensus 144 ~lV~DLDeTLi~A~t~~~~e~ri~~l~~~~~ 174 (911)
.+++||||||+.... .--+..+++++++..
T Consensus 4 li~~DlDGTLl~~~~-~i~~~~~~ai~~l~~ 33 (272)
T PRK15126 4 LAAFDMDGTLLMPDH-HLGEKTLSTLARLRE 33 (272)
T ss_pred EEEEeCCCcCcCCCC-cCCHHHHHHHHHHHH
Confidence 578999999996532 112566777877654
No 163
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=58.11 E-value=16 Score=34.56 Aligned_cols=83 Identities=17% Similarity=0.212 Sum_probs=51.8
Q ss_pred EeeCcChhhHHHHHhhhccccEEEEEEeCCc--------HHHHHHHHHhhCCCCCccccccCCCce-Eec---cCCCccc
Q 002537 260 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAE--------RDYALEMWRLLDPESNLINTKELLDRI-VCV---KSGSRKS 327 (911)
Q Consensus 260 vKLRPgv~eLr~FL~a~~sk~FElyVyTmG~--------R~YA~~I~rlLDP~g~lFg~~~l~~RI-isr---esg~~Ks 327 (911)
.++.|++.+++.+|+ ..-|.++|.|++. +.++.++++.++=. | ..+ +|- +. ....
T Consensus 24 ~~~~~~v~~~l~~L~---~~g~~l~i~Sn~~~~~~~~~~~~~~~~~l~~~~l~---~------~~~~~~~~~~KP-~~~~ 90 (132)
T TIGR01662 24 RILYPEVPDALAELK---EAGYKVVIVTNQSGIGRGKFSSGRVARRLEELGVP---I------DVLYACPHCRKP-KPGM 90 (132)
T ss_pred heeCCCHHHHHHHHH---HCCCEEEEEECCccccccHHHHHHHHHHHHHCCCC---E------EEEEECCCCCCC-ChHH
Confidence 456799999888886 5679999999999 88888888876432 1 122 221 11 1112
Q ss_pred hhhhccCC-CCCCcEEEEEcCC--cccCCCC
Q 002537 328 LFNVFQDG-TCHPKMALVIDDR--LKVWDDK 355 (911)
Q Consensus 328 L~~lfp~~-~~~~~mvVIIDDR--~dVW~~~ 355 (911)
+..+.... ..+++-++.|+|+ .|+....
T Consensus 91 ~~~~~~~~~~~~~~~~v~IGD~~~~Di~~A~ 121 (132)
T TIGR01662 91 FLEALKRFNEIDPEESVYVGDQDLTDLQAAK 121 (132)
T ss_pred HHHHHHHcCCCChhheEEEcCCCcccHHHHH
Confidence 23333222 1467789999995 5665443
No 164
>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional
Probab=57.76 E-value=16 Score=41.89 Aligned_cols=80 Identities=14% Similarity=0.268 Sum_probs=47.5
Q ss_pred EEeeCcChhhHHHHHhhhccccEEEEEEeCC---------------cHHHHHHHHHhhCCCCCccccccCCCceEec---
Q 002537 259 LVRLRPAWEDLRSYLTARGRKRFEVYVCTMA---------------ERDYALEMWRLLDPESNLINTKELLDRIVCV--- 320 (911)
Q Consensus 259 ~vKLRPgv~eLr~FL~a~~sk~FElyVyTmG---------------~R~YA~~I~rlLDP~g~lFg~~~l~~RIisr--- 320 (911)
.+++.|++.+++.+|+ .+-|.+.|.|++ .+.++..+++. .|.+|. .-++|-
T Consensus 28 ~~~l~pGV~e~L~~Lk---~~G~kL~IvTNq~g~G~~~~~~~~l~~~~~~i~~iL~~---~gl~fd-----~i~i~~~~~ 96 (354)
T PRK05446 28 KLAFEPGVIPALLKLQ---KAGYKLVMVTNQDGLGTDSFPQEDFDPPHNLMMQIFES---QGIKFD-----EVLICPHFP 96 (354)
T ss_pred cceECcCHHHHHHHHH---hCCCeEEEEECCccccCccccHHHHhhHHHHHHHHHHH---cCCcee-----eEEEeCCcC
Confidence 4788999999777776 677999999994 24444444444 343343 223442
Q ss_pred -cC-CCcc----chhhhccCCCCCCcEEEEEcCCc
Q 002537 321 -KS-GSRK----SLFNVFQDGTCHPKMALVIDDRL 349 (911)
Q Consensus 321 -es-g~~K----sL~~lfp~~~~~~~mvVIIDDR~ 349 (911)
++ +..| -+..++.....+++-+++|.|+.
T Consensus 97 sd~~~~rKP~p~~l~~a~~~l~v~~~~svmIGDs~ 131 (354)
T PRK05446 97 EDNCSCRKPKTGLVEEYLAEGAIDLANSYVIGDRE 131 (354)
T ss_pred cccCCCCCCCHHHHHHHHHHcCCCcccEEEEcCCH
Confidence 11 1222 23333332225667888999984
No 165
>PRK06769 hypothetical protein; Validated
Probab=57.02 E-value=21 Score=36.11 Aligned_cols=28 Identities=14% Similarity=0.112 Sum_probs=23.3
Q ss_pred eeCcChhhHHHHHhhhccccEEEEEEeCCcH
Q 002537 261 RLRPAWEDLRSYLTARGRKRFEVYVCTMAER 291 (911)
Q Consensus 261 KLRPgv~eLr~FL~a~~sk~FElyVyTmG~R 291 (911)
.+-||+.+++.+|+ .+-|.|.|.||+..
T Consensus 28 ~~~pgv~e~L~~Lk---~~G~~l~I~Tn~~~ 55 (173)
T PRK06769 28 TLFPFTKASLQKLK---ANHIKIFSFTNQPG 55 (173)
T ss_pred EECCCHHHHHHHHH---HCCCEEEEEECCch
Confidence 56699999888887 45699999999875
No 166
>PF14954 LIX1: Limb expression 1
Probab=56.96 E-value=21 Score=38.77 Aligned_cols=62 Identities=24% Similarity=0.233 Sum_probs=43.0
Q ss_pred CchHHHHHHHH-h--cCC------CeEEEEeeecCCCceEEEEEEECC-EEEEEe-ecCCHHHHHHHHHHHHHHH
Q 002537 706 TPSGVLQDIAM-K--CGT------KVEFRPALVASTELQFSIEAWFAG-EKIGEG-IGRTRREAQRQAAEGSIKH 769 (911)
Q Consensus 706 n~KT~LQE~~Q-k--~~~------~~~Y~~v~~~~Hd~~FtveV~I~G-e~~G~G-~GkSKKEAEq~AAk~AL~~ 769 (911)
|-...|||+=| | .+. .+.|+. .|+..+-|..=|.+-| --||.= .=.||-||++.|||.||-+
T Consensus 22 nvV~~LqeFWq~Kq~r~a~~~~~~lv~YEs--~ps~~ppyVcyVTLPGGSCFGnfq~C~tkAEARR~AAKiALmN 94 (252)
T PF14954_consen 22 NVVEALQEFWQMKQSRGADLKSEALVVYES--VPSPSPPYVCYVTLPGGSCFGNFQNCPTKAEARRSAAKIALMN 94 (252)
T ss_pred hHHHHHHHHHHHHHhccccCCCCCeeeeec--cCCCCCCeEEEEeCCCCCccCccccCCcHHHHHhhhHHHHHHH
Confidence 67899999763 3 232 157774 3677788877777755 444422 2479999999999999844
No 167
>KOG1033 consensus eIF-2alpha kinase PEK/EIF2AK3 [Translation, ribosomal structure and biogenesis]
Probab=54.90 E-value=7.6 Score=46.39 Aligned_cols=123 Identities=9% Similarity=-0.064 Sum_probs=84.8
Q ss_pred CCCceEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHHHhhhcccccCCCCCCCCCCCCc--CCccCcccccccccCC
Q 002537 731 STELQFSIEAWFAGEKIGEGIGRTRREAQRQAAEGSIKHLANVYMLRVKSDSGSGHGDGSRF--SNANENCFMGEINSFG 808 (911)
Q Consensus 731 ~Hd~~FtveV~I~Ge~~G~G~GkSKKEAEq~AAk~AL~~L~~~~~~~~~p~~~~~~~D~s~~--~~~~eN~~~~d~ns~~ 808 (911)
.++..+++++.|++.....+-+++|+.+.+.++ ...+. . |+..- .....+|++.
T Consensus 11 ~~e~~~~~q~~ik~~e~s~~~~~~~~~~~~~~~-------~sr~a---~--------~~e~~~~~~~~g~~~~~------ 66 (516)
T KOG1033|consen 11 RIERVATVQTQIKAREDSFPANKSKVRHNKRVI-------TSREA---N--------DFEPGQCLGRGGFGVVF------ 66 (516)
T ss_pred ccccceeeeeeeccccccccccccchhhhhhhh-------hhhhh---c--------cccccccccccCccccC------
Confidence 578899999999999999999999999999988 11111 0 11000 0001111111
Q ss_pred CCCCCCCCCCCCCCCCCCCCcccCCCCCCChHHHHHHHHHhcCCceeEeecCCCCCCCCCCCc-EEEEEEECCEEEceee
Q 002537 809 GQPLAKDESLSSEPSKLVDPRLEGSKKLMGSVSALKELCMTEGLGVVFQQQPPSSANSVQKDE-VYAQVEIDGQVLGKGI 887 (911)
Q Consensus 809 ~~~~~~~~~stSe~s~~~~~~~~~s~~~~NyIglLNELCqkegl~v~f~~~~~~~sgg~h~~e-F~~qVeIgGk~yg~G~ 887 (911)
+... .-.++..+++++.++....+.....+ .+.+..+ +|..++-.++.|..|.
T Consensus 67 -----------~~~n-----------~~d~~~~avkritlkn~e~s~~rvl~----~~~s~a~feh~g~~~~~ha~~~~~ 120 (516)
T KOG1033|consen 67 -----------SAQN-----------KADENKYAVKRITLKNREESRSRVLR----EVSSLAEFEHPGIKRYFHAWYERP 120 (516)
T ss_pred -----------Cccc-----------cccchhhHHHHhcccchhhhhhhhhc----cccchhhhcccchhhheeceecCC
Confidence 1111 34588999999999988887777663 2333433 5666888899999999
Q ss_pred cCCHHHHHHHHHHHHH
Q 002537 888 GSTWDEAKMQVFLLDI 903 (911)
Q Consensus 888 GsTKKEAKqqAAklAl 903 (911)
|..|+|++..++....
T Consensus 121 ~~~~qe~~d~~~l~~~ 136 (516)
T KOG1033|consen 121 PLGWQEEMDLKLLDDE 136 (516)
T ss_pred CCcccchhhhhhhhcc
Confidence 9999999998887765
No 168
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=53.72 E-value=11 Score=38.59 Aligned_cols=28 Identities=32% Similarity=0.364 Sum_probs=18.4
Q ss_pred eEEEeCCcceeecccccch-HHHHHHHHhhh
Q 002537 144 GIVFDLDETLIVANTMRSF-EDRIEALLRKI 173 (911)
Q Consensus 144 ~lV~DLDeTLi~A~t~~~~-e~ri~~l~~~~ 173 (911)
.+++||||||+.. -+.+ +..+++++++.
T Consensus 3 ~v~~DlDGTLl~~--~~~i~~~~~~~i~~l~ 31 (215)
T TIGR01487 3 LVAIDIDGTLTEP--NRMISERAIEAIRKAE 31 (215)
T ss_pred EEEEecCCCcCCC--CcccCHHHHHHHHHHH
Confidence 5789999999953 2223 45556666654
No 169
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=53.41 E-value=11 Score=38.72 Aligned_cols=28 Identities=25% Similarity=0.311 Sum_probs=19.3
Q ss_pred EEEeCCcceeecccccchHHHHHHHHhhh
Q 002537 145 IVFDLDETLIVANTMRSFEDRIEALLRKI 173 (911)
Q Consensus 145 lV~DLDeTLi~A~t~~~~e~ri~~l~~~~ 173 (911)
|++||||||+..... ..+..+++|+.+.
T Consensus 2 i~~DlDGTLL~~~~~-~~~~~~~~l~~l~ 29 (221)
T TIGR02463 2 VFSDLDGTLLDSHSY-DWQPAAPWLTRLQ 29 (221)
T ss_pred EEEeCCCCCcCCCCC-CcHHHHHHHHHHH
Confidence 799999999965431 2455667766543
No 170
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=53.18 E-value=6.6 Score=38.58 Aligned_cols=14 Identities=21% Similarity=0.676 Sum_probs=12.1
Q ss_pred eEEEeCCcceeecc
Q 002537 144 GIVFDLDETLIVAN 157 (911)
Q Consensus 144 ~lV~DLDeTLi~A~ 157 (911)
+++|||||||+...
T Consensus 3 ~iiFD~DGTL~ds~ 16 (185)
T TIGR02009 3 AVIFDMDGVIVDTA 16 (185)
T ss_pred eEEEcCCCcccCCh
Confidence 58999999999665
No 171
>PLN02423 phosphomannomutase
Probab=52.16 E-value=16 Score=39.03 Aligned_cols=30 Identities=20% Similarity=0.247 Sum_probs=19.0
Q ss_pred ceeEEEeCCcceeecccccch-HHHHHHHHhhh
Q 002537 142 CLGIVFDLDETLIVANTMRSF-EDRIEALLRKI 173 (911)
Q Consensus 142 ~L~lV~DLDeTLi~A~t~~~~-e~ri~~l~~~~ 173 (911)
++.++|||||||+..+ +.+ +..++++++..
T Consensus 7 ~~i~~~D~DGTLl~~~--~~i~~~~~~ai~~l~ 37 (245)
T PLN02423 7 GVIALFDVDGTLTAPR--KEATPEMLEFMKELR 37 (245)
T ss_pred ceEEEEeccCCCcCCC--CcCCHHHHHHHHHHH
Confidence 3556699999999654 233 44456665543
No 172
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=52.07 E-value=6.8 Score=39.60 Aligned_cols=16 Identities=31% Similarity=0.627 Sum_probs=13.5
Q ss_pred eEEEeCCcceeecccc
Q 002537 144 GIVFDLDETLIVANTM 159 (911)
Q Consensus 144 ~lV~DLDeTLi~A~t~ 159 (911)
+++||+|||||....+
T Consensus 3 ~viFD~DGTL~d~~~~ 18 (224)
T TIGR02254 3 TLLFDLDDTILDFQAA 18 (224)
T ss_pred EEEEcCcCcccccchH
Confidence 5899999999977653
No 173
>cd00594 KU Ku-core domain; includes the central DNA-binding beta-barrels, polypeptide rings, and the C-terminal arm of Ku proteins. The Ku protein consists of two tightly associated homologous subunits, Ku70 and Ku80, and was originally identified as an autoantigen recognized by the sera of patients with an autoimmunity disease. In eukaryotes, the Ku heterodimer contributes to genomic integrity through its ability to bind DNA double-strand breaks and facilitate repair by non-homologous end-joining. The bacterial Ku homologs does not contain the conserved N-terminal extension that is present in the eukaryotic Ku protein.
Probab=51.13 E-value=58 Score=34.97 Aligned_cols=87 Identities=15% Similarity=0.162 Sum_probs=61.1
Q ss_pred ccccceEEEeecCCcCCCCcchhhhhcccCceeEeeccC--CCccHHHHHHHHHhhhcccceEeec--CCCceeEEEEee
Q 002537 35 KVFDEIRISYFSEASERCPPLAVLHTITASGICFKMESK--SSDNIQLHLLHSSCIRENKTAVMPL--GLTEELHLVAMY 110 (911)
Q Consensus 35 ~~~~~~~i~~~~~~~e~~~pl~~lh~ia~~~~~~~~~~~--~~~~~~l~~lh~~c~~e~ktav~~~--~~~~elhlva~~ 110 (911)
.-.++|+|-+|-+.+ ..|+ .|.+. ...|-.-.. ..-..++..|+.+|.+.+|.||++. ..+...+|||+.
T Consensus 86 ~~~~~l~ilgF~~~~-~i~~---~~~~~--~s~~l~P~~~~~~s~~af~aL~~am~~~~kvai~r~v~r~~~~p~l~aL~ 159 (272)
T cd00594 86 ETSKGLDILGFVPAS-EIPP---YYFDK--ESYYLVPDDSDKGSEKAFSALRRALLEKDKVAIARYVLRRNSRPRLVALR 159 (272)
T ss_pred CCCCeEEEEeEechH-hCCc---ceecC--CcEEEEcCCCCcccHHHHHHHHHHHHHcCcEEEEEEEEcCCCCcEEEEEe
Confidence 346889999998876 3333 24443 344443222 2348899999999999999999998 445689999997
Q ss_pred ecCCCCCccEEEEEeecc
Q 002537 111 SRNNEKQYPCFWAFSVGS 128 (911)
Q Consensus 111 s~~~~~~~p~F~~~~v~~ 128 (911)
....+ ..+|||....|.
T Consensus 160 P~~~~-~~~gl~l~~LPf 176 (272)
T cd00594 160 PQEEE-DPEGLVLVTLPF 176 (272)
T ss_pred ccccC-CCCEEEEEccCC
Confidence 77543 457887766664
No 174
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=49.43 E-value=8 Score=40.47 Aligned_cols=12 Identities=33% Similarity=0.656 Sum_probs=11.3
Q ss_pred eEEEeCCcceee
Q 002537 144 GIVFDLDETLIV 155 (911)
Q Consensus 144 ~lV~DLDeTLi~ 155 (911)
+++|||||||+.
T Consensus 12 ~vIFDlDGTL~d 23 (224)
T PRK14988 12 TVLLDMDGTLLD 23 (224)
T ss_pred EEEEcCCCCccc
Confidence 699999999997
No 175
>PF02169 LPP20: LPP20 lipoprotein; InterPro: IPR002217 A major antigen has been recognised in Helicobacter pylori, a protein with an apparent molecular weight of 20,000 and mass 18,283 kDa []. DNA sequence analysis revealed a 525 bp gene, encoding a 175-amino acid residue product with a typical 21-residue lipoprotein signal peptide and consensus prolipoprotein processing site []. Results of experimental work with Lpp20 are consistent with it being a nonessential lipoprotein []. Prokaryotic membrane lipoproteins are synthesised with precursor signal peptides that are cleaved by specific peptidases (signal peptidase II). The enzyme recognises a conserved sequence, cutting upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [].; GO: 0009279 cell outer membrane
Probab=49.33 E-value=19 Score=32.24 Aligned_cols=29 Identities=17% Similarity=0.193 Sum_probs=22.6
Q ss_pred CCEEEceeecCCHHHHHHHHHHHHHHHHH
Q 002537 879 DGQVLGKGIGSTWDEAKMQVFLLDIQNFL 907 (911)
Q Consensus 879 gGk~yg~G~GsTKKEAKqqAAklAl~kl~ 907 (911)
.+..+|.|.|.+.+.||++|-...-++|.
T Consensus 11 ~~~l~a~G~~~~~~~A~~~A~~~la~~i~ 39 (92)
T PF02169_consen 11 QQYLYAVGSGSSREQAKQDALANLAEQIS 39 (92)
T ss_pred ccEEEEEEcccChHHHHHHHHHHHHHhee
Confidence 34579999999999999998666655553
No 176
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=49.21 E-value=16 Score=34.40 Aligned_cols=12 Identities=58% Similarity=0.852 Sum_probs=10.8
Q ss_pred eEEEeCCcceee
Q 002537 144 GIVFDLDETLIV 155 (911)
Q Consensus 144 ~lV~DLDeTLi~ 155 (911)
+|+||+|+||+.
T Consensus 2 ~~~~D~dgtL~~ 13 (132)
T TIGR01662 2 GVVLDLDGTLTD 13 (132)
T ss_pred EEEEeCCCceec
Confidence 589999999994
No 177
>PF02169 LPP20: LPP20 lipoprotein; InterPro: IPR002217 A major antigen has been recognised in Helicobacter pylori, a protein with an apparent molecular weight of 20,000 and mass 18,283 kDa []. DNA sequence analysis revealed a 525 bp gene, encoding a 175-amino acid residue product with a typical 21-residue lipoprotein signal peptide and consensus prolipoprotein processing site []. Results of experimental work with Lpp20 are consistent with it being a nonessential lipoprotein []. Prokaryotic membrane lipoproteins are synthesised with precursor signal peptides that are cleaved by specific peptidases (signal peptidase II). The enzyme recognises a conserved sequence, cutting upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [].; GO: 0009279 cell outer membrane
Probab=46.16 E-value=27 Score=31.20 Aligned_cols=29 Identities=17% Similarity=0.240 Sum_probs=22.6
Q ss_pred CEEEEEeecCCHHHHHHHHHHHHHHHHHh
Q 002537 744 GEKIGEGIGRTRREAQRQAAEGSIKHLAN 772 (911)
Q Consensus 744 Ge~~G~G~GkSKKEAEq~AAk~AL~~L~~ 772 (911)
+..+|.|.|.+++.|+++|-.+..+.+..
T Consensus 12 ~~l~a~G~~~~~~~A~~~A~~~la~~i~~ 40 (92)
T PF02169_consen 12 QYLYAVGSGSSREQAKQDALANLAEQISV 40 (92)
T ss_pred cEEEEEEcccChHHHHHHHHHHHHHheeE
Confidence 34789999999988888887776665544
No 178
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=45.96 E-value=17 Score=40.42 Aligned_cols=28 Identities=29% Similarity=0.457 Sum_probs=21.2
Q ss_pred eeEEEeCCcceeecccccchHHHHHHHHhh
Q 002537 143 LGIVFDLDETLIVANTMRSFEDRIEALLRK 172 (911)
Q Consensus 143 L~lV~DLDeTLi~A~t~~~~e~ri~~l~~~ 172 (911)
++++||+||||+..... ++.-.++++..
T Consensus 1 ~~~ifD~DGvL~~g~~~--i~ga~eal~~L 28 (321)
T TIGR01456 1 FGFAFDIDGVLFRGKKP--IAGASDALRRL 28 (321)
T ss_pred CEEEEeCcCceECCccc--cHHHHHHHHHH
Confidence 58999999999976654 67777666543
No 179
>PLN02151 trehalose-phosphatase
Probab=44.73 E-value=23 Score=40.77 Aligned_cols=26 Identities=19% Similarity=0.293 Sum_probs=22.2
Q ss_pred chhhHHHHHhhccceeEEEeCCccee
Q 002537 129 GLYNSCLTMLNLRCLGIVFDLDETLI 154 (911)
Q Consensus 129 ~~y~~~~~ll~~r~L~lV~DLDeTLi 154 (911)
..++..+.+.+.++++|+||+||||+
T Consensus 85 ~~~~~~~~~~~~~~~ll~lDyDGTL~ 110 (354)
T PLN02151 85 NMFEEILHKSEGKQIVMFLDYDGTLS 110 (354)
T ss_pred HHHHHHHHhhcCCceEEEEecCccCC
Confidence 36677777778899999999999999
No 180
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=43.84 E-value=17 Score=38.43 Aligned_cols=28 Identities=32% Similarity=0.318 Sum_probs=19.5
Q ss_pred EEEeCCcceeecccccchHHHHHHHHhhh
Q 002537 145 IVFDLDETLIVANTMRSFEDRIEALLRKI 173 (911)
Q Consensus 145 lV~DLDeTLi~A~t~~~~e~ri~~l~~~~ 173 (911)
|++||||||+..... .++..++++++..
T Consensus 2 i~~DlDGTll~~~~~-~~~~~~~~i~~l~ 29 (256)
T TIGR01486 2 IFTDLDGTLLDPHGY-DWGPAKEVLERLQ 29 (256)
T ss_pred EEEcCCCCCcCCCCc-CchHHHHHHHHHH
Confidence 789999999977641 2345667766544
No 181
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=43.31 E-value=20 Score=38.85 Aligned_cols=15 Identities=40% Similarity=0.437 Sum_probs=13.3
Q ss_pred ceeEEEeCCcceeec
Q 002537 142 CLGIVFDLDETLIVA 156 (911)
Q Consensus 142 ~L~lV~DLDeTLi~A 156 (911)
++.|+||+||||+..
T Consensus 14 ~~li~~D~DGTLl~~ 28 (266)
T PRK10187 14 NYAWFFDLDGTLAEI 28 (266)
T ss_pred CEEEEEecCCCCCCC
Confidence 589999999999964
No 182
>PLN03017 trehalose-phosphatase
Probab=43.09 E-value=16 Score=42.24 Aligned_cols=26 Identities=15% Similarity=0.266 Sum_probs=22.8
Q ss_pred chhhHHHHHhhccceeEEEeCCccee
Q 002537 129 GLYNSCLTMLNLRCLGIVFDLDETLI 154 (911)
Q Consensus 129 ~~y~~~~~ll~~r~L~lV~DLDeTLi 154 (911)
..++.-..+...+++.|++|+||||+
T Consensus 98 ~~~~~~~~~~~~k~~llflD~DGTL~ 123 (366)
T PLN03017 98 EMFEQIMEASRGKQIVMFLDYDGTLS 123 (366)
T ss_pred HHHHHHHHHhcCCCeEEEEecCCcCc
Confidence 46777777789999999999999999
No 183
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=43.01 E-value=13 Score=40.71 Aligned_cols=14 Identities=29% Similarity=0.617 Sum_probs=12.0
Q ss_pred eEEEeCCcceeecc
Q 002537 144 GIVFDLDETLIVAN 157 (911)
Q Consensus 144 ~lV~DLDeTLi~A~ 157 (911)
+|+||+||||+...
T Consensus 42 ~VIFDlDGTLvDS~ 55 (286)
T PLN02779 42 ALLFDCDGVLVETE 55 (286)
T ss_pred EEEEeCceeEEccc
Confidence 68999999999644
No 184
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=42.43 E-value=20 Score=36.15 Aligned_cols=13 Identities=54% Similarity=0.846 Sum_probs=11.1
Q ss_pred EEEeCCcceeecc
Q 002537 145 IVFDLDETLIVAN 157 (911)
Q Consensus 145 lV~DLDeTLi~A~ 157 (911)
|++||||||+...
T Consensus 2 i~~D~DgTL~~~~ 14 (204)
T TIGR01484 2 LFFDLDGTLLDPN 14 (204)
T ss_pred EEEeCcCCCcCCC
Confidence 7899999999653
No 185
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=40.40 E-value=27 Score=34.06 Aligned_cols=15 Identities=13% Similarity=0.226 Sum_probs=12.7
Q ss_pred eEEEeCCcceeeccc
Q 002537 144 GIVFDLDETLIVANT 158 (911)
Q Consensus 144 ~lV~DLDeTLi~A~t 158 (911)
++.||+|+||+.-..
T Consensus 2 ~~~~d~dgtl~~~~~ 16 (147)
T TIGR01656 2 ALFLDRDGVINEDTV 16 (147)
T ss_pred eEEEeCCCceeccCC
Confidence 578999999997764
No 186
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=39.35 E-value=23 Score=37.91 Aligned_cols=30 Identities=37% Similarity=0.304 Sum_probs=19.6
Q ss_pred eeEEEeCCcceeecccccchHHHHHHHHhhh
Q 002537 143 LGIVFDLDETLIVANTMRSFEDRIEALLRKI 173 (911)
Q Consensus 143 L~lV~DLDeTLi~A~t~~~~e~ri~~l~~~~ 173 (911)
-.|++||||||+.... ...+.-+++|+...
T Consensus 5 kli~~DlDGTLl~~~~-~~~~~~~~ai~~l~ 34 (273)
T PRK00192 5 LLVFTDLDGTLLDHHT-YSYEPAKPALKALK 34 (273)
T ss_pred eEEEEcCcccCcCCCC-cCcHHHHHHHHHHH
Confidence 3689999999996432 22455566665543
No 187
>PF02735 Ku: Ku70/Ku80 beta-barrel domain; InterPro: IPR006164 The Ku heterodimer is composed of Ku70 and Ku80 (or Ku86), 70 kDa and 80 kDa subunits of an ATP-dependent DNA helicase, which contributes to genomic integrity through its ability to bind DNA double-stranded breaks and facilitate repair by the non-homologous end-joining pathway. This is the central DNA-binding beta-barrel domain and is found in both the Ku70 and Ku80 proteins. Ku makes only a few contacts with the sugar-phosphate backbone, and none with the DNA bases, but it fits sterically to major and minor groove contours forming a ring that encircles duplex DNA, cradling two full turns of the DNA molecule. By forming a bridge between the broken DNA ends, Ku acts to structurally support and align the DNA ends, to protect them from degradation, and to prevent promiscuous binding to unbroken DNA. Ku effectively aligns the DNA, while still allowing access of polymerases, nucleases and ligases to the broken DNA ends to promote end joining [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0006303 double-strand break repair via nonhomologous end joining; PDB: 1JEY_B 1JEQ_B.
Probab=39.27 E-value=1.1e+02 Score=31.68 Aligned_cols=87 Identities=17% Similarity=0.175 Sum_probs=51.8
Q ss_pred ccccceEEEeecCCcCCCCcchhhhhcccCceeEeeccCCCc---cHHHHHHHHHhhhcccceEeec--CCCceeEEEEe
Q 002537 35 KVFDEIRISYFSEASERCPPLAVLHTITASGICFKMESKSSD---NIQLHLLHSSCIRENKTAVMPL--GLTEELHLVAM 109 (911)
Q Consensus 35 ~~~~~~~i~~~~~~~e~~~pl~~lh~ia~~~~~~~~~~~~~~---~~~l~~lh~~c~~e~ktav~~~--~~~~elhlva~ 109 (911)
+...+|+|-+|-+.+. .|+ .|.+. ...|-.-..... ...+..|+..|.+.+|-||++. ..+.+-+|||+
T Consensus 80 ~~~~~l~ilGF~~~~~-i~~---~~~~~--~~~~i~p~~~~~~~s~~~f~aL~~am~~~~~vaI~r~v~r~~~~p~l~aL 153 (200)
T PF02735_consen 80 ETSPGLEILGFVPRSN-IPP---YYFMG--ESYFIVPDEKSGEGSAKAFSALVQAMLEKNKVAIARYVLRSNSRPRLVAL 153 (200)
T ss_dssp -S-SEEEEEEEEEGGG-S-C---CG-EC--EEEEEEEETTTECCHHHHHHHHHHHHHHCTEEEEEEEESSTTS--EEEEE
T ss_pred cCCCeEEEEEEEcchh-CCc---eEEeC--CcEEEEECCCCcchhHHHHHHHHHHHHhcCcEEEEEEEEcCCCCcEEEEE
Confidence 3458999999988773 333 23333 233333222221 6899999999999999999998 44569999999
Q ss_pred eecCCCC-CccEEEEEeec
Q 002537 110 YSRNNEK-QYPCFWAFSVG 127 (911)
Q Consensus 110 ~s~~~~~-~~p~F~~~~v~ 127 (911)
....... ..+||+....+
T Consensus 154 ~P~~~~~~~~~gl~~~~Lp 172 (200)
T PF02735_consen 154 IPQIEESDTPEGLVLIRLP 172 (200)
T ss_dssp EEEE-CEEC-CEEEEEE--
T ss_pred EEeccccCCCCeEEEEEcC
Confidence 8886431 11555544433
No 188
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=39.03 E-value=20 Score=37.66 Aligned_cols=22 Identities=27% Similarity=0.443 Sum_probs=16.8
Q ss_pred HHhhccceeEEEeCCcceeecc
Q 002537 136 TMLNLRCLGIVFDLDETLIVAN 157 (911)
Q Consensus 136 ~ll~~r~L~lV~DLDeTLi~A~ 157 (911)
.|.++--=++++|||+|||-=.
T Consensus 22 ~L~~~Gikgvi~DlDNTLv~wd 43 (175)
T COG2179 22 ILKAHGIKGVILDLDNTLVPWD 43 (175)
T ss_pred HHHHcCCcEEEEeccCceeccc
Confidence 4555666789999999999543
No 189
>COG2503 Predicted secreted acid phosphatase [General function prediction only]
Probab=38.92 E-value=13 Score=41.11 Aligned_cols=18 Identities=33% Similarity=0.447 Sum_probs=14.5
Q ss_pred hccceeEEEeCCcceeec
Q 002537 139 NLRCLGIVFDLDETLIVA 156 (911)
Q Consensus 139 ~~r~L~lV~DLDeTLi~A 156 (911)
..++-+||+|||||+|.-
T Consensus 76 k~K~~aVvlDlDETvLdN 93 (274)
T COG2503 76 KGKKKAVVLDLDETVLDN 93 (274)
T ss_pred cCCCceEEEecchHhhcC
Confidence 345679999999999953
No 190
>TIGR00578 ku70 ATP-dependent DNA helicase ii, 70 kDa subunit (ku70). Proteins in this family are involved in non-homologous end joining, a process used for the repair of double stranded DNA breaks. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Cutoff does not detect the putative ku70 homologs in yeast.
Probab=38.44 E-value=1e+02 Score=37.68 Aligned_cols=87 Identities=15% Similarity=0.134 Sum_probs=59.4
Q ss_pred ccccceEEEeecCCcCCCCcchhhhhcccCceeEeeccCCC----ccHHHHHHHHHhhhcccceEeec--CCCceeEEEE
Q 002537 35 KVFDEIRISYFSEASERCPPLAVLHTITASGICFKMESKSS----DNIQLHLLHSSCIRENKTAVMPL--GLTEELHLVA 108 (911)
Q Consensus 35 ~~~~~~~i~~~~~~~e~~~pl~~lh~ia~~~~~~~~~~~~~----~~~~l~~lh~~c~~e~ktav~~~--~~~~elhlva 108 (911)
+....|+|-+|-+.+. .++ .|.+. .+.|-. +... -..++..||..|.+.+|.||+.. +.+.-=+|||
T Consensus 316 ~~~~~l~ilGF~~~s~-l~~---~~~~~--~s~fi~-Pde~~~~gs~~afsaL~~~l~~~~kvAI~~~v~r~~~~P~lva 388 (584)
T TIGR00578 316 FDPPGLQLMGFKPLSM-LKK---HHHLR--PSLFVY-PEESLVRGSTTLFSALLQKCLEKEVAALCRYISRRNQPPYFVA 388 (584)
T ss_pred cCCCceEEEeeccHHH-CCc---hhhcC--CceEEe-cCCcccccHHHHHHHHHHHHHhcCcEEEEEEEecCCCCCEEEE
Confidence 3567899999988873 333 35553 234433 3322 26789999999999999999998 5456678999
Q ss_pred eeecCCCC-------CccEEEEEeecc
Q 002537 109 MYSRNNEK-------QYPCFWAFSVGS 128 (911)
Q Consensus 109 ~~s~~~~~-------~~p~F~~~~v~~ 128 (911)
+.....+. ..+|||....|.
T Consensus 389 L~P~~~~~d~~~~q~~p~G~~l~~LPf 415 (584)
T TIGR00578 389 LVPQEEELDDQKIQVTPPGFHLVFLPF 415 (584)
T ss_pred EeCCcccccccCCccCCCeEEEEecCc
Confidence 88764211 127888877663
No 191
>PLN02887 hydrolase family protein
Probab=38.39 E-value=27 Score=42.47 Aligned_cols=39 Identities=23% Similarity=0.268 Sum_probs=25.8
Q ss_pred HHhhccceeEEEeCCcceeecccccchHHHHHHHHhhhcc
Q 002537 136 TMLNLRCLGIVFDLDETLIVANTMRSFEDRIEALLRKIST 175 (911)
Q Consensus 136 ~ll~~r~L~lV~DLDeTLi~A~t~~~~e~ri~~l~~~~~~ 175 (911)
|....+-=.|++||||||+.... .--+..+++++.+...
T Consensus 302 ~~~~~~iKLIa~DLDGTLLn~d~-~Is~~t~eAI~kl~ek 340 (580)
T PLN02887 302 RFYKPKFSYIFCDMDGTLLNSKS-QISETNAKALKEALSR 340 (580)
T ss_pred hhhccCccEEEEeCCCCCCCCCC-ccCHHHHHHHHHHHHC
Confidence 33333434689999999996532 1127778888887754
No 192
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=38.07 E-value=12 Score=47.62 Aligned_cols=74 Identities=15% Similarity=0.192 Sum_probs=60.9
Q ss_pred CCccCCCCCCchHHHHHHHHhcCCCeEEEEeee-cCCCceEEEEEEE-----CCEEEEEeecCCHHHHHHHHHHHHHHHH
Q 002537 697 SGRDVSSTETPSGVLQDIAMKCGTKVEFRPALV-ASTELQFSIEAWF-----AGEKIGEGIGRTRREAQRQAAEGSIKHL 770 (911)
Q Consensus 697 ~~~~~~~~~n~KT~LQE~~Qk~~~~~~Y~~v~~-~~Hd~~FtveV~I-----~Ge~~G~G~GkSKKEAEq~AAk~AL~~L 770 (911)
+++.+...+|.|..|++|-|+......|+.+.. ++|.+.|+.+..| +-.+.+.+.|..||.|+..-|..-++.|
T Consensus 159 ~ihg~wt~eN~K~~ln~~~q~~~~~~~y~~~~~g~~~~~s~~~e~si~v~~~~~~~~~~~~gsnkk~~~~~ca~s~vrqm 238 (1282)
T KOG0921|consen 159 EIHGNWTMENAKKALNEYLQKMRIQDNYKYTIVGPEHVRSFEAEASIYVPQLNRNLVAKETGSNKKVAEASCALSLVRQL 238 (1282)
T ss_pred cccCCCCcchhHHHHhHHHhhhhhccccceeecCCccccchhhhHHHhhhhhchhhhhhhccccceecCcchHHHHHHHH
Confidence 456666788999999999999998888887655 7899999987643 5567789999999999999988777666
No 193
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=37.61 E-value=21 Score=37.28 Aligned_cols=23 Identities=35% Similarity=0.462 Sum_probs=16.4
Q ss_pred EEEeCCcceeecccccchHHHHHHH
Q 002537 145 IVFDLDETLIVANTMRSFEDRIEAL 169 (911)
Q Consensus 145 lV~DLDeTLi~A~t~~~~e~ri~~l 169 (911)
|++||||||+. +.+.+.++.+.+
T Consensus 2 i~~DlDgTLl~--~~~~~~~~~~~~ 24 (236)
T TIGR02471 2 IITDLDNTLLG--DDEGLASFVELL 24 (236)
T ss_pred eEEeccccccC--CHHHHHHHHHHH
Confidence 78999999995 445566655433
No 194
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=36.71 E-value=15 Score=38.44 Aligned_cols=38 Identities=13% Similarity=0.147 Sum_probs=31.9
Q ss_pred EeeCcChhhHHH-HHhhhccccEEEEEEeCCcHHHHHHHHHh
Q 002537 260 VRLRPAWEDLRS-YLTARGRKRFEVYVCTMAERDYALEMWRL 300 (911)
Q Consensus 260 vKLRPgv~eLr~-FL~a~~sk~FElyVyTmG~R~YA~~I~rl 300 (911)
++++|++.+++. .|+ ++-+.+.|.|+..+.|+..+++.
T Consensus 93 ~~l~pga~e~L~~~l~---~~G~~v~IvSas~~~~~~~ia~~ 131 (210)
T TIGR01545 93 VTAFPLVAERLRQYLE---SSDADIWLITGSPQPLVEAVYFD 131 (210)
T ss_pred CCCCccHHHHHHHHHH---hCCCEEEEEcCCcHHHHHHHHHh
Confidence 367899999663 554 56899999999999999999976
No 195
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=36.57 E-value=17 Score=35.74 Aligned_cols=10 Identities=50% Similarity=0.989 Sum_probs=0.0
Q ss_pred EEEeCCccee
Q 002537 145 IVFDLDETLI 154 (911)
Q Consensus 145 lV~DLDeTLi 154 (911)
++||+||||+
T Consensus 1 v~fD~DGTL~ 10 (192)
T PF12710_consen 1 VIFDFDGTLT 10 (192)
T ss_dssp EEEESBTTTB
T ss_pred eEEecCcCee
No 196
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=35.46 E-value=27 Score=37.35 Aligned_cols=29 Identities=17% Similarity=0.221 Sum_probs=22.0
Q ss_pred eEEEeCCcceeecccccchHHHHHHHHhhhc
Q 002537 144 GIVFDLDETLIVANTMRSFEDRIEALLRKIS 174 (911)
Q Consensus 144 ~lV~DLDeTLi~A~t~~~~e~ri~~l~~~~~ 174 (911)
.++|||||||+.... .+...+++++++..
T Consensus 3 ~~~~D~DGtl~~~~~--~i~~a~~~l~~l~~ 31 (249)
T TIGR01457 3 GYLIDLDGTMYKGKE--RIPEAETFVHELQK 31 (249)
T ss_pred EEEEeCCCceEcCCe--eCcCHHHHHHHHHH
Confidence 579999999997764 46667777776654
No 197
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=35.33 E-value=31 Score=34.77 Aligned_cols=17 Identities=18% Similarity=0.362 Sum_probs=13.4
Q ss_pred eEEEeCCcceeeccccc
Q 002537 144 GIVFDLDETLIVANTMR 160 (911)
Q Consensus 144 ~lV~DLDeTLi~A~t~~ 160 (911)
.+++|+|+||+...+..
T Consensus 1 iVisDIDGTL~~sd~~~ 17 (157)
T smart00775 1 IVISDIDGTITKSDVLG 17 (157)
T ss_pred CEEEecCCCCccccccc
Confidence 37999999999776543
No 198
>cd00789 KU_like Ku-core domain, Ku-like subfamily; composed of prokaryotic homologs of the eukaryotic DNA binding protein Ku. The alignment includes the core domain shared by the prokaryotic YkoV-like proteins and the eukaryotic Ku70 and Ku80. The prokaryotic Ku homologs are predicted to form homodimers. It is proposed that the Ku homologs are functionally associated with ATP-dependent DNA ligase and the eukaryotic-type primase, probably as components of a double-strand break repair system.
Probab=34.62 E-value=1.3e+02 Score=33.10 Aligned_cols=78 Identities=18% Similarity=0.188 Sum_probs=55.6
Q ss_pred ccccceEEEeecCCcCCCCcchhhhhcccCceeEeeccCCCccHHHHHHHHHhhhcccceEeec--CCCceeEEEEeeec
Q 002537 35 KVFDEIRISYFSEASERCPPLAVLHTITASGICFKMESKSSDNIQLHLLHSSCIRENKTAVMPL--GLTEELHLVAMYSR 112 (911)
Q Consensus 35 ~~~~~~~i~~~~~~~e~~~pl~~lh~ia~~~~~~~~~~~~~~~~~l~~lh~~c~~e~ktav~~~--~~~~elhlva~~s~ 112 (911)
+..+.|.|.+|-+.++-.| .|+ +...| +.+......++..|+..|.+.+|.||++. + +.| ||||+...
T Consensus 84 ~~~~~i~IlgFv~~~~I~~----~y~---~~syy-l~P~~~~~kaf~~L~~Al~~~~kvaIar~V~r-~~~-~l~aL~P~ 153 (256)
T cd00789 84 ESTRTIEIVDFVPLDEIDP----IYF---DKPYY-LAPDKGGEKAYALLREALRDTGKVAIAKVVLR-TRE-RLAALRPR 153 (256)
T ss_pred CCCCeEEEEeEeCHHHCCH----hHc---CCCEE-EecCCCcchHHHHHHHHHHHcCCEEEEEEEEc-CCc-eEEEEEEC
Confidence 3567899999998876553 232 23344 54555558899999999999999999998 4 456 89999876
Q ss_pred CCCCCccEEEEEeec
Q 002537 113 NNEKQYPCFWAFSVG 127 (911)
Q Consensus 113 ~~~~~~p~F~~~~v~ 127 (911)
. .|||....+
T Consensus 154 ~-----~gL~l~~Lp 163 (256)
T cd00789 154 G-----KGLVLNTLR 163 (256)
T ss_pred C-----CEEEEEECC
Confidence 4 355544433
No 199
>PF14657 Integrase_AP2: AP2-like DNA-binding integrase domain
Probab=34.17 E-value=95 Score=25.27 Aligned_cols=21 Identities=19% Similarity=0.140 Sum_probs=15.7
Q ss_pred EEEEEeecCCHHHHHHHHHHH
Q 002537 745 EKIGEGIGRTRREAQRQAAEG 765 (911)
Q Consensus 745 e~~G~G~GkSKKEAEq~AAk~ 765 (911)
+.+-.+-.+|||||+..+++.
T Consensus 17 k~~~k~GF~TkkeA~~~~~~~ 37 (46)
T PF14657_consen 17 KQKTKRGFKTKKEAEKALAKI 37 (46)
T ss_pred EEEEcCCCCcHHHHHHHHHHH
Confidence 445556689999999888763
No 200
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=32.95 E-value=19 Score=41.80 Aligned_cols=14 Identities=36% Similarity=0.800 Sum_probs=12.1
Q ss_pred eEEEeCCcceeecc
Q 002537 144 GIVFDLDETLIVAN 157 (911)
Q Consensus 144 ~lV~DLDeTLi~A~ 157 (911)
+++|||||||+...
T Consensus 243 ~vIFDlDGTLiDs~ 256 (459)
T PRK06698 243 ALIFDMDGTLFQTD 256 (459)
T ss_pred heeEccCCceecch
Confidence 68999999999654
No 201
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=32.48 E-value=33 Score=36.91 Aligned_cols=34 Identities=9% Similarity=-0.091 Sum_probs=24.0
Q ss_pred cChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHh
Q 002537 264 PAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRL 300 (911)
Q Consensus 264 Pgv~eLr~FL~a~~sk~FElyVyTmG~R~YA~~I~rl 300 (911)
+.+.+.+.+|. ..-+.+.|.|+..+.|+......
T Consensus 123 ~~l~~a~~~L~---~~~~~~~iatn~~~~~~~~~~~~ 156 (257)
T TIGR01458 123 QILNQAFRLLL---DGAKPLLIAIGKGRYYKRKDGLA 156 (257)
T ss_pred HHHHHHHHHHH---cCCCCEEEEeCCCCCCcCCCCCC
Confidence 56666677776 35567889999998887654443
No 202
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=32.32 E-value=1.3e+02 Score=38.29 Aligned_cols=14 Identities=29% Similarity=0.510 Sum_probs=8.8
Q ss_pred cccchhchhhhhhh
Q 002537 394 RGGFFKEFDEGLLQ 407 (911)
Q Consensus 394 h~~FF~~~D~~l~~ 407 (911)
+-.||+-.++++.|
T Consensus 421 rpqYykLIEecISq 434 (1102)
T KOG1924|consen 421 RPQYYKLIEECISQ 434 (1102)
T ss_pred hHHHHHHHHHHHHH
Confidence 45667777776554
No 203
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=32.01 E-value=49 Score=35.11 Aligned_cols=15 Identities=40% Similarity=0.439 Sum_probs=13.4
Q ss_pred cceeEEEeCCcceee
Q 002537 141 RCLGIVFDLDETLIV 155 (911)
Q Consensus 141 r~L~lV~DLDeTLi~ 155 (911)
|+..|+||+||||+-
T Consensus 2 ~~~~l~lD~DGTL~~ 16 (244)
T TIGR00685 2 RKRAFFFDYDGTLSE 16 (244)
T ss_pred CcEEEEEecCccccC
Confidence 678899999999985
No 204
>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []. SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....
Probab=31.68 E-value=23 Score=37.95 Aligned_cols=13 Identities=46% Similarity=0.347 Sum_probs=11.8
Q ss_pred ceeEEEeCCccee
Q 002537 142 CLGIVFDLDETLI 154 (911)
Q Consensus 142 ~L~lV~DLDeTLi 154 (911)
++.||.|||+|||
T Consensus 2 ~~ll~sDlD~Tl~ 14 (247)
T PF05116_consen 2 PRLLASDLDGTLI 14 (247)
T ss_dssp SEEEEEETBTTTB
T ss_pred CEEEEEECCCCCc
Confidence 4679999999999
No 205
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=30.97 E-value=24 Score=36.52 Aligned_cols=44 Identities=25% Similarity=0.366 Sum_probs=30.3
Q ss_pred EEEeeCcChhhHHHHHhhhccccEEEEEEe-CCcHHHHHHHHHhhCCC
Q 002537 258 VLVRLRPAWEDLRSYLTARGRKRFEVYVCT-MAERDYALEMWRLLDPE 304 (911)
Q Consensus 258 ~~vKLRPgv~eLr~FL~a~~sk~FElyVyT-mG~R~YA~~I~rlLDP~ 304 (911)
.-++|-|++.+++.-|+ ..-.+|-|.+ ..+-+.|.+++++|+=.
T Consensus 42 ~~v~lypdv~~iL~~L~---~~gv~lavASRt~~P~~A~~~L~~l~i~ 86 (169)
T PF12689_consen 42 EEVSLYPDVPEILQELK---ERGVKLAVASRTDEPDWARELLKLLEID 86 (169)
T ss_dssp -EE---TTHHHHHHHHH---HCT--EEEEE--S-HHHHHHHHHHTT-C
T ss_pred CEEEeCcCHHHHHHHHH---HCCCEEEEEECCCChHHHHHHHHhcCCC
Confidence 35788899999888887 4889999999 67889999999997665
No 206
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=30.69 E-value=28 Score=35.18 Aligned_cols=16 Identities=44% Similarity=0.621 Sum_probs=11.4
Q ss_pred EEEeCCcceeeccccc
Q 002537 145 IVFDLDETLIVANTMR 160 (911)
Q Consensus 145 lV~DLDeTLi~A~t~~ 160 (911)
+-||||+|||...+..
T Consensus 3 a~fD~DgTLi~~~s~~ 18 (159)
T PF08645_consen 3 AFFDLDGTLIKTKSGK 18 (159)
T ss_dssp EEE-SCTTTEE-STST
T ss_pred EEEeCCCCccCCCCCC
Confidence 5799999999887644
No 207
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=30.32 E-value=1.9e+02 Score=26.96 Aligned_cols=76 Identities=17% Similarity=0.202 Sum_probs=51.4
Q ss_pred ccccceeeccccceeeeecCCCCCCceEEEeeCcChhhHHHHHhhhc--cccEEEEEEeCCcHHHHHHHHHhhCCCCCcc
Q 002537 231 ALVRPLIRLQEKNIILTRINPQIRDTSVLVRLRPAWEDLRSYLTARG--RKRFEVYVCTMAERDYALEMWRLLDPESNLI 308 (911)
Q Consensus 231 ~~~rpvirl~~~n~~ltrI~P~~r~~~~~vKLRPgv~eLr~FL~a~~--sk~FElyVyTmG~R~YA~~I~rlLDP~g~lF 308 (911)
++++=.||+|....+-.|.+... -+.+|+.|+.... ...|+| -|+ |
T Consensus 4 ~~t~i~vRlP~G~r~~rrF~~~~-----------~L~~v~~fv~~~g~~~~~f~L--~t~-------------------F 51 (82)
T cd01773 4 PKARLMLRYPDGKREQIALPEQA-----------KLLALVRHVQSKGYPNERFEL--LTN-------------------F 51 (82)
T ss_pred CeeEEEEECCCCCEEEEEeCCCC-----------cHHHHHHHHHhcCCCCCCEEE--ecC-------------------C
Confidence 45666899999888888887655 3778888887321 223443 333 7
Q ss_pred ccccCCCceEeccCCCccchhhhccCCCCCCcEEEEEcCC
Q 002537 309 NTKELLDRIVCVKSGSRKSLFNVFQDGTCHPKMALVIDDR 348 (911)
Q Consensus 309 g~~~l~~RIisresg~~KsL~~lfp~~~~~~~mvVIIDDR 348 (911)
. .|+++-++-. ++|+.+- -.++.++||-||
T Consensus 52 P-----Rr~~~~~d~~-~TL~e~G----L~P~~~LfVq~r 81 (82)
T cd01773 52 P-----RRKLSHLDYD-ITLQEAG----LCPQETVFVQER 81 (82)
T ss_pred C-----CcccCCcccC-CCHHHcC----CCCCcEEEEecC
Confidence 7 8888765444 5777553 367899999998
No 208
>cd00873 KU80 Ku-core domain, Ku80 subfamily; Ku80 is a subunit of the Ku protein, which plays a key role in multiple nuclear processes such as DNA repair, chromosome maintenance, transcription regulation, and V(D)J recombination. The mechanism underlying the regulation of all the diverse functions of Ku is still unclear, although it seems that Ku is a multifunctional protein that works in nuclei. In mammalian cells, the Ku heterodimer recruits the catalytic subunit of DNA-dependent protein kinase (DNA-PK), which is dependent on its association with the Ku70/80 heterodimer bound to DNA for its protein kinase activity.
Probab=29.46 E-value=1.8e+02 Score=32.36 Aligned_cols=84 Identities=17% Similarity=0.227 Sum_probs=56.2
Q ss_pred ccceEEEeecCCcCCCCcchhhhhcccCceeEeeccCC--CccHHHHHHHHHhhhcccceEeec--CCCceeEEEEeeec
Q 002537 37 FDEIRISYFSEASERCPPLAVLHTITASGICFKMESKS--SDNIQLHLLHSSCIRENKTAVMPL--GLTEELHLVAMYSR 112 (911)
Q Consensus 37 ~~~~~i~~~~~~~e~~~pl~~lh~ia~~~~~~~~~~~~--~~~~~l~~lh~~c~~e~ktav~~~--~~~~elhlva~~s~ 112 (911)
.++|.|.+|-+.++- |+. |.+. ...|-.-... ....++..|+.+|.+.+|.||++. ..+++.+|+|+...
T Consensus 96 ~~~l~ilgF~~~~~i-~~~---~~~~--~s~~l~P~~~~~~~~~a~~aL~~am~~~~k~aI~r~v~r~~~~p~l~aL~P~ 169 (300)
T cd00873 96 SKGLDILGFIKASNV-PRY---YLMG--ESSYVVPQQDDEAAALAFSALVRALAELDKYAIARYVYKDNSEPQLGVLFPR 169 (300)
T ss_pred CCceEEEeeccHHHC-Chh---heeC--CcEEEEcCCCChhHHHHHHHHHHHHHhCCCEEEEEEEEcCCCCcEEEEEecc
Confidence 578888888777632 322 3332 3444343321 137899999999999999999998 55778999999887
Q ss_pred CCCCCccEEEEEeec
Q 002537 113 NNEKQYPCFWAFSVG 127 (911)
Q Consensus 113 ~~~~~~p~F~~~~v~ 127 (911)
... ...||+....+
T Consensus 170 ~~~-~~~~l~l~~LP 183 (300)
T cd00873 170 IKE-DYECLVLVRLP 183 (300)
T ss_pred ccC-CCCEEEEEecC
Confidence 532 23566555444
No 209
>PF02839 CBM_5_12: Carbohydrate binding domain; InterPro: IPR003610 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM5 from CAZY and CBM12 from CAZY. These modules have a core structure consisting of a 3-stranded meander beta-sheet, which contain six aromatic groups that may be important for binding. CBM5/12 is found in proteins such as chitinase A1, chitinase B [], and endoglucanase Z []. The overall topology of the CBM is structurally similar to the C-terminal chitin-binding domains (ChBD) of chitinase A1 and chitinase B, however the binding mechanism for the ChBD may be different from that of the CBM [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0005576 extracellular region; PDB: 1ED7_A 1W1V_A 1E15_B 1UR8_A 1E6Z_B 1E6P_A 1W1T_A 1W1P_B 1UR9_A 1E6R_A ....
Probab=29.32 E-value=29 Score=27.29 Aligned_cols=21 Identities=29% Similarity=0.412 Sum_probs=16.0
Q ss_pred HhhhcCccccCCeEEEeeccc
Q 002537 201 QYAENDQVNENGKVIKVQSEV 221 (911)
Q Consensus 201 q~~~~d~v~~~G~~~~~q~E~ 221 (911)
.|..+|.|++||++++++--.
T Consensus 9 ~Y~~Gd~V~~~g~~y~a~~~~ 29 (41)
T PF02839_consen 9 TYNAGDRVSYNGKLYQAKWWT 29 (41)
T ss_dssp EE-TT-EEEETTEEEEESSSC
T ss_pred EEcCCCEEEECCCEEEEeecc
Confidence 477899999999999987643
No 210
>PRK10444 UMP phosphatase; Provisional
Probab=29.11 E-value=40 Score=36.38 Aligned_cols=28 Identities=25% Similarity=0.399 Sum_probs=20.9
Q ss_pred eEEEeCCcceeecccccchHHHHHHHHhhh
Q 002537 144 GIVFDLDETLIVANTMRSFEDRIEALLRKI 173 (911)
Q Consensus 144 ~lV~DLDeTLi~A~t~~~~e~ri~~l~~~~ 173 (911)
.++|||||||+...+ -++.-++.+++..
T Consensus 3 ~v~~DlDGtL~~~~~--~~p~a~~~l~~L~ 30 (248)
T PRK10444 3 NVICDIDGVLMHDNV--AVPGAAEFLHRIL 30 (248)
T ss_pred EEEEeCCCceEeCCe--eCccHHHHHHHHH
Confidence 579999999998874 3677777765443
No 211
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=28.76 E-value=70 Score=33.23 Aligned_cols=12 Identities=58% Similarity=0.631 Sum_probs=9.6
Q ss_pred eEEEeCCcceee
Q 002537 144 GIVFDLDETLIV 155 (911)
Q Consensus 144 ~lV~DLDeTLi~ 155 (911)
.+|||||.||.-
T Consensus 5 lvvFDLD~TlW~ 16 (169)
T PF12689_consen 5 LVVFDLDYTLWP 16 (169)
T ss_dssp EEEE-STTTSSS
T ss_pred EEEEcCcCCCCc
Confidence 589999999983
No 212
>PF09921 DUF2153: Uncharacterized protein conserved in archaea (DUF2153); InterPro: IPR014450 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=27.99 E-value=87 Score=31.50 Aligned_cols=40 Identities=25% Similarity=0.278 Sum_probs=27.1
Q ss_pred hHHHHHHHHhhhccCCCchhhh----hhHHHHHHhhhhHHHHHHhhhcC
Q 002537 162 FEDRIEALLRKISTEVDPQRIA----GMQAEVKRYQDDKNILKQYAEND 206 (911)
Q Consensus 162 ~e~ri~~l~~~~~~~~dP~~~~----~~~~e~kr~q~D~~lL~q~~~~d 206 (911)
+.++|++...|+ .||.-++ .|+.||++.- |++|.+|++=|
T Consensus 42 m~RTlKaFd~WL---qdP~ItshMPreML~dv~~~~--~~il~~llelD 85 (126)
T PF09921_consen 42 MMRTLKAFDQWL---QDPMITSHMPREMLEDVWETL--REILEQLLELD 85 (126)
T ss_pred HHHHHHHHHHHH---cCchhHhcCCHHHHHHHHHHH--HHHHHHHHHHh
Confidence 688899999999 4555443 6777876543 45666666543
No 213
>cd00788 KU70 Ku-core domain, Ku70 subfamily; Ku70 is a subunit of the Ku protein, which plays a key role in multiple nuclear processes such as DNA repair, chromosome maintenance, transcription regulation, and V(D)J recombination. The mechanism underlying the regulation of all the diverse functions of Ku is still unclear, although it seems that Ku is a multifunctional protein that works in the nuclei. In mammalian cells, the Ku heterodimer recruits the catalytic subunit of DNA-dependent protein kinase (DNA-PK), which is dependent on its association with the Ku70/80 heterodimer bound to DNA for its protein kinase activity.
Probab=27.70 E-value=2.1e+02 Score=31.57 Aligned_cols=86 Identities=22% Similarity=0.250 Sum_probs=55.9
Q ss_pred ccccceEEEeecCCcCCCCcchhhhhcccCceeEeeccCC----CccHHHHHHHHHhhhcccceEeec--CCCceeEEEE
Q 002537 35 KVFDEIRISYFSEASERCPPLAVLHTITASGICFKMESKS----SDNIQLHLLHSSCIRENKTAVMPL--GLTEELHLVA 108 (911)
Q Consensus 35 ~~~~~~~i~~~~~~~e~~~pl~~lh~ia~~~~~~~~~~~~----~~~~~l~~lh~~c~~e~ktav~~~--~~~~elhlva 108 (911)
.-..+|+|.+|-+.++ -++ .|.+. ...|-. +.. +...++..|+.+|.+.+|.||++. ..+..-+|||
T Consensus 92 ~~~~~l~ilgF~~~~~-i~~---~~~~~--~s~fl~-P~~~~~~gs~~af~aL~~am~~~~kvaIa~~v~r~~~~p~l~a 164 (287)
T cd00788 92 FGEPGLRLIGFKPRST-LKP---YHNIK--KSYFIY-PDESDYKGSTRLFAALLRSCLKKNKVAICWYILRKNSPPRLVA 164 (287)
T ss_pred cCCCceEEEeeccHHH-CCh---hhccC--CceeEe-cCcccccCcHHHHHHHHHHHHhcCcEEEEEEEecCCCCCEEEE
Confidence 3467899999987662 222 24443 233333 333 337899999999999999999998 3344669999
Q ss_pred eeecCCCC-------CccEEEEEeec
Q 002537 109 MYSRNNEK-------QYPCFWAFSVG 127 (911)
Q Consensus 109 ~~s~~~~~-------~~p~F~~~~v~ 127 (911)
+....... ..+|||....+
T Consensus 165 L~P~~~~~~~~~~~~~~~gl~l~~LP 190 (287)
T cd00788 165 LVPQEEELDEPDGQVLPPGFHLVPLP 190 (287)
T ss_pred EeccccccCCCCCccCCCcEEEEecC
Confidence 87653211 13677765544
No 214
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=27.04 E-value=43 Score=36.21 Aligned_cols=28 Identities=29% Similarity=0.355 Sum_probs=19.7
Q ss_pred eEEEeCCcceeecccccchHHHHHHHHhhh
Q 002537 144 GIVFDLDETLIVANTMRSFEDRIEALLRKI 173 (911)
Q Consensus 144 ~lV~DLDeTLi~A~t~~~~e~ri~~l~~~~ 173 (911)
+++||+||||+...+ .++...++|+.+.
T Consensus 4 ~~~~D~DGtl~~~~~--~~~ga~e~l~~L~ 31 (279)
T TIGR01452 4 GFIFDCDGVLWLGER--VVPGAPELLDRLA 31 (279)
T ss_pred EEEEeCCCceEcCCe--eCcCHHHHHHHHH
Confidence 688999999997653 4666566665543
No 215
>PLN02382 probable sucrose-phosphatase
Probab=26.84 E-value=41 Score=39.13 Aligned_cols=18 Identities=39% Similarity=0.349 Sum_probs=14.9
Q ss_pred hccceeEEEeCCcceeec
Q 002537 139 NLRCLGIVFDLDETLIVA 156 (911)
Q Consensus 139 ~~r~L~lV~DLDeTLi~A 156 (911)
..-+|.||-|||||||-.
T Consensus 6 ~~~~~lI~sDLDGTLL~~ 23 (413)
T PLN02382 6 GSPRLMIVSDLDHTMVDH 23 (413)
T ss_pred CCCCEEEEEcCCCcCcCC
Confidence 345799999999999954
No 216
>PF09003 Phage_integ_N: Bacteriophage lambda integrase, N-terminal domain ; InterPro: IPR015094 The amino terminal domain of bacteriophage lambda integrase folds into a three-stranded, antiparallel beta-sheet that packs against a C-terminal alpha-helix, adopting a fold that is structurally related to the three-stranded beta-sheet family of DNA-binding domains (which includes the GCC-box DNA-binding domain and the N-terminal domain of Tn916 integrase). This domain is responsible for high-affinity binding to each of the five DNA arm-type sites and is also a context-sensitive modulator of DNA cleavage []. ; GO: 0003677 DNA binding, 0008907 integrase activity, 0015074 DNA integration; PDB: 1Z1G_B 1Z1B_A 2WCC_3 1KJK_A.
Probab=26.52 E-value=62 Score=29.89 Aligned_cols=31 Identities=23% Similarity=0.294 Sum_probs=20.9
Q ss_pred EEEEEEECCEEEceeecCCHHHHHHHHHHHHHH
Q 002537 872 VYAQVEIDGQVLGKGIGSTWDEAKMQVFLLDIQ 904 (911)
Q Consensus 872 F~~qVeIgGk~yg~G~GsTKKEAKqqAAklAl~ 904 (911)
|.|.--|.||++ |.|.++.+|+.+|.++-..
T Consensus 29 y~Yr~P~tGk~~--~LG~d~~~Ai~~A~eaN~~ 59 (75)
T PF09003_consen 29 YQYRNPITGKEH--GLGTDRAEAIAQAIEANLR 59 (75)
T ss_dssp EEEE-TTTS-EE--EEES-HHHHHHHHHHHHHH
T ss_pred EEEecCCCCcee--eCCCCHHHHHHHHHHHHHH
Confidence 446666899987 5556999999999876543
No 217
>PF00333 Ribosomal_S5: Ribosomal protein S5, N-terminal domain; InterPro: IPR013810 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S5 is one of the proteins from the small ribosomal subunit, and is a protein of 166 to 254 amino-acid residues. In Escherichia coli, S5 is known to be important in the assembly and function of the 30S ribosomal subunit. Mutations in S5 have been shown to increase translational error frequencies. It belongs to a family of ribosomal proteins which, on the basis of sequence similarities [, ], groups bacterial, cyanelle, red algal chloroplast, archaeal and fungal mitochondrial S5; mammalian, Caenorhabditis elegans, Drosophila and plant S2; and yeast S4 (SUP44). This entry represents the N-terminal domain of ribosomal protein S5, which has an alpha-beta(3)-alpha structure that folds into two layers, alpha/beta.; GO: 0003723 RNA binding, 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2ZKQ_e 2XZN_E 2XZM_E 3O30_B 1S1H_E 3IZB_E 3U5C_C 3U5G_C 3O2Z_B 3BBN_E ....
Probab=26.45 E-value=54 Score=29.37 Aligned_cols=39 Identities=21% Similarity=0.254 Sum_probs=28.9
Q ss_pred CCceEEEEEEECCEE----EEEeecCCHHHHHHHHHHHHHHHH
Q 002537 732 TELQFSIEAWFAGEK----IGEGIGRTRREAQRQAAEGSIKHL 770 (911)
Q Consensus 732 Hd~~FtveV~I~Ge~----~G~G~GkSKKEAEq~AAk~AL~~L 770 (911)
.-..|.+-|.+++.. ||.|.++.-..|-+.|-+.|.++|
T Consensus 20 r~~~~~alvvvGn~~G~vG~G~gKa~~~~~Ai~kA~~~A~knl 62 (67)
T PF00333_consen 20 RIFSFRALVVVGNGNGLVGFGVGKAKEVPDAIRKAKRKAKKNL 62 (67)
T ss_dssp EEEEEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHHHCSE
T ss_pred ceeEEEEEEEEecCCCcEecCcccchhHHHHHHHHHHHHHhCC
Confidence 456788888887654 666677777888888888887654
No 218
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=25.63 E-value=57 Score=40.76 Aligned_cols=33 Identities=27% Similarity=0.176 Sum_probs=23.1
Q ss_pred cceeEEEeCCcceeecccccchHHHHHHHHhhhc
Q 002537 141 RCLGIVFDLDETLIVANTMRSFEDRIEALLRKIS 174 (911)
Q Consensus 141 r~L~lV~DLDeTLi~A~t~~~~e~ri~~l~~~~~ 174 (911)
.+-.|++||||||+...+. ..+..+++|++...
T Consensus 415 ~~KLIfsDLDGTLLd~d~~-i~~~t~eAL~~L~e 447 (694)
T PRK14502 415 FKKIVYTDLDGTLLNPLTY-SYSTALDALRLLKD 447 (694)
T ss_pred eeeEEEEECcCCCcCCCCc-cCHHHHHHHHHHHH
Confidence 3457889999999986542 23566777776654
No 219
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=24.64 E-value=78 Score=37.90 Aligned_cols=43 Identities=21% Similarity=0.148 Sum_probs=36.9
Q ss_pred EEEeeCcChhhHHHHHhhhcccc-EEEEEEeCCcHHHHHHHHHhhCC
Q 002537 258 VLVRLRPAWEDLRSYLTARGRKR-FEVYVCTMAERDYALEMWRLLDP 303 (911)
Q Consensus 258 ~~vKLRPgv~eLr~FL~a~~sk~-FElyVyTmG~R~YA~~I~rlLDP 303 (911)
+...+||++.++++.|+ +.- +.++|.|...+.+|..+++.++=
T Consensus 381 ~~d~~~~g~~e~l~~L~---~~g~i~v~ivTgd~~~~a~~i~~~lgi 424 (556)
T TIGR01525 381 LRDQLRPEAKEAIAALK---RAGGIKLVMLTGDNRSAAEAVAAELGI 424 (556)
T ss_pred ecccchHhHHHHHHHHH---HcCCCeEEEEeCCCHHHHHHHHHHhCC
Confidence 34579999999888886 455 99999999999999999999654
No 220
>TIGR02772 Ku_bact Ku protein, prokaryotic. Members of this protein family are Ku proteins of non-homologous end joining (NHEJ) DNA repair in bacteria and in at least one member of the archaea (Archaeoglobus fulgidus). Most members are encoded by a gene adjacent to the gene for the DNA ligase that completes the repair. The NHEJ system is broadly but rather sparsely distributed, being present in about one fifth of the first 250 completed prokarytotic genomes. A few species (e.g. Archaeoglobus fulgidus and Bradyrhizobium japonicum) have multiple copies that appear to represent recent paralogous family expansion.
Probab=24.42 E-value=2.7e+02 Score=30.76 Aligned_cols=70 Identities=17% Similarity=0.203 Sum_probs=49.5
Q ss_pred ccccceEEEeecCCcCCCCcchhhhhcccCceeEeeccCCCccHHHHHHHHHhhhcccceEeec-CCCceeEEEEeeecC
Q 002537 35 KVFDEIRISYFSEASERCPPLAVLHTITASGICFKMESKSSDNIQLHLLHSSCIRENKTAVMPL-GLTEELHLVAMYSRN 113 (911)
Q Consensus 35 ~~~~~~~i~~~~~~~e~~~pl~~lh~ia~~~~~~~~~~~~~~~~~l~~lh~~c~~e~ktav~~~-~~~~elhlva~~s~~ 113 (911)
+..+.|.|.+|-+.++ .+|. |+ +.. |-+.+......++..|+..|.+.+|.||++. -++.| ||+|+....
T Consensus 85 ~~~~~i~I~gFv~~~~-i~~~---y~---~~s-yyl~P~~~~~~a~~~L~~Al~~~~kvaIar~v~r~r~-~l~aL~P~~ 155 (258)
T TIGR02772 85 ESTKTIEIEAFVDADE-IDPI---YF---DTP-YYLAPDKGGEKAYALLREALEDTGKVGIAKVVLRGRE-RLAALRPVG 155 (258)
T ss_pred cCCCeEEEEEEeCHHH-CChh---ee---CCC-EEEccCCCchHHHHHHHHHHHHcCCEEEEEEEEcCCc-EEEEEEECC
Confidence 3457899999987654 3442 22 223 4455544458899999999999999999988 22455 799998764
No 221
>PF04098 Rad52_Rad22: Rad52/22 family double-strand break repair protein; InterPro: IPR007232 The DNA single-strand annealing proteins (SSAPs), such as RecT, Red-beta, ERF and Rad52, function in RecA-dependent and RecA-independent DNA recombination pathways. This family includes proteins related to Rad52. These proteins contain two helix-hairpin-helix motifs [].; GO: 0006281 DNA repair, 0006310 DNA recombination; PDB: 1KN0_I 1H2I_U.
Probab=23.91 E-value=1.4e+02 Score=30.22 Aligned_cols=48 Identities=13% Similarity=0.097 Sum_probs=22.5
Q ss_pred CCCCCCcCcccCCCCCCCccccCCccCCCCCCchHHHHHHHHhcCCCeEEEEee
Q 002537 675 SFSGEEIPLSRSSSSSRDVDFESGRDVSSTETPSGVLQDIAMKCGTKVEFRPAL 728 (911)
Q Consensus 675 ~f~~~~~~~~~~ss~~~~~~~~~~~~~~~~~n~KT~LQE~~Qk~~~~~~Y~~v~ 728 (911)
||+-+++.+...+.....+.. +........|++++--.|...+|....
T Consensus 12 ~~~~~~i~~R~~~~~~~~~~y------l~~~~vi~~aN~vfGfngWs~~i~~~~ 59 (154)
T PF04098_consen 12 PLPPEEISWRPGSGGKSKLPY------LESRKVIELANEVFGFNGWSSEIISLE 59 (154)
T ss_dssp -B-TTTEEEEE-TTS--EEEE------E-HHHHHHHHHHHH-TTTEEEEEEEEE
T ss_pred ccCHHHhEecccCCCCccccc------cCHHHHHHHHHHHhCcCCCceEEEeeE
Confidence 566667766555543111111 122234677777776677665555443
No 222
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=23.79 E-value=88 Score=32.85 Aligned_cols=18 Identities=44% Similarity=0.486 Sum_probs=14.8
Q ss_pred eEEEeCCcceeecccccc
Q 002537 144 GIVFDLDETLIVANTMRS 161 (911)
Q Consensus 144 ~lV~DLDeTLi~A~t~~~ 161 (911)
..+||+||||+.-.|+..
T Consensus 7 la~FDfDgTLt~~ds~~~ 24 (210)
T TIGR01545 7 IIFFDLDGTLHQQDMFGS 24 (210)
T ss_pred EEEEcCCCCCccCccHHH
Confidence 378999999998887653
No 223
>KOG3085 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=22.98 E-value=1.6e+02 Score=32.33 Aligned_cols=77 Identities=14% Similarity=0.064 Sum_probs=44.0
Q ss_pred EEeeCcChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccCCCceEeccCCCc--------cchhh
Q 002537 259 LVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSGSR--------KSLFN 330 (911)
Q Consensus 259 ~vKLRPgv~eLr~FL~a~~sk~FElyVyTmG~R~YA~~I~rlLDP~g~lFg~~~l~~RIisresg~~--------KsL~~ 330 (911)
|.=+.+-+ +++.-|+ .+-+.|.|.||..+.|= .+...+.=. .+|. .=|.|=+-|-. +.|++
T Consensus 112 ~~~~~~~~-~~lq~lR---~~g~~l~iisN~d~r~~-~~l~~~~l~-~~fD-----~vv~S~e~g~~KPDp~If~~al~~ 180 (237)
T KOG3085|consen 112 WKYLDGMQ-ELLQKLR---KKGTILGIISNFDDRLR-LLLLPLGLS-AYFD-----FVVESCEVGLEKPDPRIFQLALER 180 (237)
T ss_pred ceeccHHH-HHHHHHH---hCCeEEEEecCCcHHHH-HHhhccCHH-Hhhh-----hhhhhhhhccCCCChHHHHHHHHH
Confidence 33344444 6555565 44599999999999887 333332222 4555 33333333322 33443
Q ss_pred hccCCCCCCcEEEEEcCCcc
Q 002537 331 VFQDGTCHPKMALVIDDRLK 350 (911)
Q Consensus 331 lfp~~~~~~~mvVIIDDR~d 350 (911)
+- ..|+-+|.|||...
T Consensus 181 l~----v~Pee~vhIgD~l~ 196 (237)
T KOG3085|consen 181 LG----VKPEECVHIGDLLE 196 (237)
T ss_pred hC----CChHHeEEecCccc
Confidence 32 45788999999764
No 224
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=22.04 E-value=49 Score=32.88 Aligned_cols=14 Identities=36% Similarity=0.453 Sum_probs=11.7
Q ss_pred eEEEeCCcceeecc
Q 002537 144 GIVFDLDETLIVAN 157 (911)
Q Consensus 144 ~lV~DLDeTLi~A~ 157 (911)
+|+||.||||+.-.
T Consensus 3 ~i~fDktGTLt~~~ 16 (215)
T PF00702_consen 3 AICFDKTGTLTQGK 16 (215)
T ss_dssp EEEEECCTTTBESH
T ss_pred EEEEecCCCcccCe
Confidence 58999999998654
No 225
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=21.85 E-value=46 Score=33.98 Aligned_cols=11 Identities=18% Similarity=0.344 Sum_probs=0.0
Q ss_pred eEEEeCCccee
Q 002537 144 GIVFDLDETLI 154 (911)
Q Consensus 144 ~lV~DLDeTLi 154 (911)
.||||+|+||+
T Consensus 23 li~~D~Dgtl~ 33 (183)
T PRK09484 23 LLICDVDGVFS 33 (183)
T ss_pred EEEEcCCeeee
No 226
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=21.46 E-value=1.7e+02 Score=34.64 Aligned_cols=71 Identities=23% Similarity=0.385 Sum_probs=48.4
Q ss_pred HHhhhhHHHHHHhhhcCccccCCeEEEeecccccCCCC---------cccccccceeeccc--cceeeeecCCCCCCceE
Q 002537 190 KRYQDDKNILKQYAENDQVNENGKVIKVQSEVVPALSD---------SHQALVRPLIRLQE--KNIILTRINPQIRDTSV 258 (911)
Q Consensus 190 kr~q~D~~lL~q~~~~d~v~~~G~~~~~q~E~~~~~~d---------~~~~~~rpvirl~~--~n~~ltrI~P~~r~~~~ 258 (911)
|.|++ +-||-|.-.++.+-||..+-+-.-..-...+ .-.-+.||++|||+ +-.+..|- |-+
T Consensus 222 rLfhD--eTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~------~pV 293 (434)
T KOG1009|consen 222 RLFHD--ETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRF------SPV 293 (434)
T ss_pred eeeec--CchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEe------eee
Confidence 34555 4688899888888888877654433322111 11257899999988 45566555 449
Q ss_pred EEeeCcChhh
Q 002537 259 LVRLRPAWED 268 (911)
Q Consensus 259 ~vKLRPgv~e 268 (911)
|.+|||...+
T Consensus 294 y~elrp~~~~ 303 (434)
T KOG1009|consen 294 YYELRPLSSE 303 (434)
T ss_pred EEEecccccc
Confidence 9999999877
No 227
>TIGR01021 rpsE_bact ribosomal protein S5, bacterial/organelle type. This model finds chloroplast ribosomal protein S5 as well as bacterial ribosomal protein S5. A candidate mitochondrial form (Saccharomyces cerevisiae YBR251W and its homolog) differs substantially and is not included in this model.
Probab=21.26 E-value=1.1e+02 Score=31.66 Aligned_cols=41 Identities=27% Similarity=0.323 Sum_probs=29.8
Q ss_pred CCceEEEEEEECCEE----EEEeecCCHHHHHHHHHHHHHHHHHh
Q 002537 732 TELQFSIEAWFAGEK----IGEGIGRTRREAQRQAAEGSIKHLAN 772 (911)
Q Consensus 732 Hd~~FtveV~I~Ge~----~G~G~GkSKKEAEq~AAk~AL~~L~~ 772 (911)
--..|.+-|.+++.. ||.|.++.-.+|-+.|.+.|.+.|..
T Consensus 20 r~~sf~alvvvGn~~G~vG~G~GKa~ev~~Ai~kA~~~Ak~nl~~ 64 (154)
T TIGR01021 20 RRFSFSALVVVGDGKGRVGFGFGKAKEVPDAIKKAVEKARKNLIN 64 (154)
T ss_pred cEEEEEEEEEEECCCCeEeeeeeecchHHHHHHHHHHHHHhCeEE
Confidence 345788888887754 55555566678888898888888754
No 228
>cd00036 ChtBD3 Chitin/cellulose binding domain. Putative carbohydrate binding domain found in many different glycosyl hydrolase enzymes. May occur in tandem arrangements.
Probab=20.72 E-value=57 Score=25.57 Aligned_cols=19 Identities=42% Similarity=0.523 Sum_probs=16.6
Q ss_pred HhhhcCccccCCeEEEeec
Q 002537 201 QYAENDQVNENGKVIKVQS 219 (911)
Q Consensus 201 q~~~~d~v~~~G~~~~~q~ 219 (911)
-|..+|.|++||+.++++-
T Consensus 7 ~Y~~Gd~V~~~g~~y~a~w 25 (41)
T cd00036 7 VYTAGDLVSYNGKVYKAKW 25 (41)
T ss_pred EecCCCEEEECCeEEEEee
Confidence 4778999999999999865
No 229
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=20.58 E-value=81 Score=32.82 Aligned_cols=20 Identities=25% Similarity=0.318 Sum_probs=14.8
Q ss_pred hccceeEEEeCCcceeeccc
Q 002537 139 NLRCLGIVFDLDETLIVANT 158 (911)
Q Consensus 139 ~~r~L~lV~DLDeTLi~A~t 158 (911)
..--=+||||+|.||..-..
T Consensus 38 ~~Gik~li~DkDNTL~~~~~ 57 (168)
T PF09419_consen 38 KKGIKALIFDKDNTLTPPYE 57 (168)
T ss_pred hcCceEEEEcCCCCCCCCCc
Confidence 33346899999999986553
No 230
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=20.40 E-value=92 Score=37.56 Aligned_cols=42 Identities=24% Similarity=0.198 Sum_probs=35.9
Q ss_pred EEeeCcChhhHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCC
Q 002537 259 LVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDP 303 (911)
Q Consensus 259 ~vKLRPgv~eLr~FL~a~~sk~FElyVyTmG~R~YA~~I~rlLDP 303 (911)
..++||++.++.+.|+ +.-+.++|.|...+.+|+.+++.+.=
T Consensus 403 ~d~l~~~a~e~i~~Lk---~~Gi~v~ilSgd~~~~a~~ia~~lgi 444 (562)
T TIGR01511 403 EDQLRPEAKEVIQALK---RRGIEPVMLTGDNRKTAKAVAKELGI 444 (562)
T ss_pred cccccHHHHHHHHHHH---HcCCeEEEEcCCCHHHHHHHHHHcCC
Confidence 4568999999888887 45689999999999999999998644
Done!