Query 002537
Match_columns 911
No_of_seqs 317 out of 789
Neff 4.0
Searched_HMMs 29240
Date Tue Mar 26 16:06:44 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002537.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1257-1261//hhsearch_pdb/002537hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ef1_A RNA polymerase II subun 1.0 1 1 268.2 14.7 164 132-371 16-182 (442)
2 3ef0_A RNA polymerase II subun 1.0 1 1 254.8 18.9 252 131-470 7-317 (372)
3 1qu6_A Protein kinase PKR; dsR 1.0 1 1 246.2 16.0 161 703-909 11-173 (179)
4 2yt4_A Protein DGCR8; DSRBD, R 1.0 1 1 211.1 14.8 176 703-908 20-198 (232)
5 2l3j_A Double-stranded RNA-spe 1.0 1 1 181.8 24.8 195 704-909 3-226 (236)
6 3qle_A TIM50P; chaperone, mito 1.0 1 1 148.1 13.5 113 258-394 56-174 (204)
7 2ght_A Carboxy-terminal domain 1.0 1 1 134.2 10.6 115 256-394 50-170 (181)
8 2hhl_A CTD small phosphatase-l 1.0 1 1 132.4 11.7 117 256-396 63-185 (195)
9 1x49_A Interferon-induced, dou 1.0 1 1 131.5 9.2 72 703-774 12-85 (97)
10 3shq_A UBLCP1; phosphatase, hy 1.0 1 1 131.2 7.7 120 259-394 162-297 (320)
No 1
>3ef1_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, BEF3, acylphosphate analog, cobalt, magnesium; HET: BFD; 2.15A {Schizosaccharomyces pombe}
Probab=1.00 E-value=1 Score=268.23 Aligned_cols=164 Identities=24% Similarity=0.431 Sum_probs=137.3
Q ss_pred HHHHHHHHCCCEEEEEECCCCEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 67899862130269974774211120441238999999853216799034554589988733149999986303811128
Q 002537 132 NSCLTMLNLRCLGIVFDLDETLIVANTMRSFEDRIEALLRKISTEVDPQRIAGMQAEVKRYQDDKNILKQYAENDQVNEN 211 (911)
Q Consensus 132 ~~~~~ll~~r~L~lV~DLDeTLi~A~t~~~~e~ri~~l~~~~~~~~dP~~~~~~~~e~kr~q~D~~lL~q~~~~d~v~~~ 211 (911)
+...|||..|||.||+||||||||+... ..+ ..|+.++.+|++. ..+++++|+.+
T Consensus 16 ~~~~rll~~~Kl~LVLDLDeTLiHs~~~----~~~---~~~~~~~~~~~~~--~~~dv~~F~l~---------------- 70 (442)
T 3ef1_A 16 ENVKRLRQEKRLSLIVXLDQTIIHATVD----PTV---GEWMSDPGNVNYD--VLRDVRSFNLQ---------------- 70 (442)
T ss_dssp HHHHHHHHTTCEEEEECCBTTTEEEECC----THH---HHHHTCTTSTTTG--GGTTCEEEEEE----------------
T ss_pred HHHHHHHHCCCEEEEEEECCCEECCCCC----CCC---CHHCCCCCCCCHH--HHCCCCCEEEE----------------
T ss_conf 8999998669708999615612212345----663---1110377776613--32110113610----------------
Q ss_pred CEEEEEECCCCCCCCCCCCCCCCCEEECCCCCEEEEECCCCCCCCEEEEEECCCHHHHHHHHHHHCCCCEEEEEEECCCH
Q ss_conf 92987401002478875333223526315553255311789888338996086716678888461135589999947917
Q 002537 212 GKVIKVQSEVVPALSDSHQALVRPLIRLQEKNIILTRINPQIRDTSVLVRLRPAWEDLRSYLTARGRKRFEVYVCTMAER 291 (911)
Q Consensus 212 G~~~~~q~E~~~~~~d~~~~~~rpvirl~~~n~~ltrI~P~~r~~~~~vKLRPgv~eLr~FL~a~~sk~FElyVyTmG~R 291 (911)
+.+....++|||++|||+.+ ||+ +++++|||+|||+|.+
T Consensus 71 -------------------------------------~~~~~~~~~~~V~~RPgl~e---FL~-~ls~~yEivIfTas~~ 109 (442)
T 3ef1_A 71 -------------------------------------EGPSGYTSCYYIKFRPGLAQ---FLQ-KISELYELHIYTMGTK 109 (442)
T ss_dssp -------------------------------------ETTTTEEEEEEEEECTTHHH---HHH-HHTTTEEEEEECSSCH
T ss_pred -------------------------------------ECCCCCEEEEEEEECCCHHH---HHH-HHHCCCEEEEECCCCH
T ss_conf -------------------------------------23688526999995878999---999-8727867999848978
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCEEECCCC---CCCCHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCEEEECCCCC
Q ss_conf 89999998309999853565677806860479---844433331689989967999829833699999998699336667
Q 002537 292 DYALEMWRLLDPESNLINTKELLDRIVCVKSG---SRKSLFNVFQDGTCHPKMALVIDDRLKVWDDKDQPRVHVVPAFAP 368 (911)
Q Consensus 292 ~YA~~I~rlLDP~g~lFg~~~l~~RIisresg---~~KsL~~ifp~~~~~~~mvVIIDDR~dVW~~~~~~~i~vV~~Y~p 368 (911)
.||..|+++|||++.||. +|+++|+++ ..|+|.++|+ ++.++||||||+.++|..+ +|.+.|.+|.|
T Consensus 110 ~YA~~Vl~~LDp~~~~f~-----~Rl~sRd~cg~~~~KdL~~ll~---rdl~~vvIIDd~p~~~~~~--pN~I~I~~~~f 179 (442)
T 3ef1_A 110 AYAKEVAKIIDPTGKLFQ-----DRVLSRDDSGSLAQKSLRRLFP---CDTSMVVVIDDRGDVWDWN--PNLIKVVPYEF 179 (442)
T ss_dssp HHHHHHHHHHCTTSTTTT-----TCEECTTTSSCSSCCCGGGTCS---SCCTTEEEEESCSGGGTTC--TTEEECCCCCC
T ss_pred HHHHHHHHHHCCCCCCCC-----CEEEEECCCCCCEEEEHHHHCC---CCCCEEEEEECCHHHHCCC--CCEEECCCCCC
T ss_conf 999999999644776003-----1699732779860500688649---9944089998988882889--97777478525
Q ss_pred CCC
Q ss_conf 667
Q 002537 369 YYA 371 (911)
Q Consensus 369 f~~ 371 (911)
|..
T Consensus 180 F~~ 182 (442)
T 3ef1_A 180 FVG 182 (442)
T ss_dssp STT
T ss_pred CCC
T ss_conf 677
No 2
>3ef0_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, ALF4, transition state analog, cobalt, magnesium; 2.10A {Schizosaccharomyces pombe}
Probab=1.00 E-value=1 Score=254.76 Aligned_cols=252 Identities=19% Similarity=0.307 Sum_probs=191.1
Q ss_pred HHHHHHHHHCCCEEEEEECCCCEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 56789986213026997477421112044123899999985321679903455458998873314999998630381112
Q 002537 131 YNSCLTMLNLRCLGIVFDLDETLIVANTMRSFEDRIEALLRKISTEVDPQRIAGMQAEVKRYQDDKNILKQYAENDQVNE 210 (911)
Q Consensus 131 y~~~~~ll~~r~L~lV~DLDeTLi~A~t~~~~e~ri~~l~~~~~~~~dP~~~~~~~~e~kr~q~D~~lL~q~~~~d~v~~ 210 (911)
-++..|||..+|+.|||||||||||+...+ .+ ..|.+...+|+. ...++++.|+.+
T Consensus 7 ~~~~~rl~~~~k~~LVlDLD~TLvhS~~~~----~~---~~w~~~~~~~~~--~~~~dv~~f~~~--------------- 62 (372)
T 3ef0_A 7 SENVKRLRQEKRLSLIVDLDQTIIHATVDP----TV---GEWMSDPGNVNY--DVLRDVRSFNLQ--------------- 62 (372)
T ss_dssp HHHHHHHHHHTCEEEEECCBTTTEEEECCT----HH---HHHHTCTTSTTT--GGGTTCEEEEEE---------------
T ss_pred HHHHHHHHHCCCCEEEECCCCCCCCCCCCC----CC---CHHHCCCCCCCH--HHHHHHHCEEEE---------------
T ss_conf 689999986799789986998755136767----54---211126778865--665343140555---------------
Q ss_pred CCEEEEEECCCCCCCCCCCCCCCCCEEECCCCCEEEEECCCCCCCCEEEEEECCCHHHHHHHHHHHCCCCEEEEEEECCC
Q ss_conf 89298740100247887533322352631555325531178988833899608671667888846113558999994791
Q 002537 211 NGKVIKVQSEVVPALSDSHQALVRPLIRLQEKNIILTRINPQIRDTSVLVRLRPAWEDLRSYLTARGRKRFEVYVCTMAE 290 (911)
Q Consensus 211 ~G~~~~~q~E~~~~~~d~~~~~~rpvirl~~~n~~ltrI~P~~r~~~~~vKLRPgv~eLr~FL~a~~sk~FElyVyTmG~ 290 (911)
..+....++|+|++|||+++ ||+ +++++|||+|||++.
T Consensus 63 --------------------------------------~~~~~~~~~~~v~~RPg~~e---FL~-~l~~~yeivI~Tas~ 100 (372)
T 3ef0_A 63 --------------------------------------EGPSGYTSCYYIKFRPGLAQ---FLQ-KISELYELHIYTMGT 100 (372)
T ss_dssp --------------------------------------ETTTTEEEEEEEEECTTHHH---HHH-HHHTTEEEEEECSSC
T ss_pred --------------------------------------ECCCCCEEEEEEEECCCHHH---HHH-HHHCCCEEEEEECCC
T ss_conf --------------------------------------51477447999997868999---999-875586799990885
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCC---CCCCHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCEEEECCCC
Q ss_conf 789999998309999853565677806860479---84443333168998996799982983369999999869933666
Q 002537 291 RDYALEMWRLLDPESNLINTKELLDRIVCVKSG---SRKSLFNVFQDGTCHPKMALVIDDRLKVWDDKDQPRVHVVPAFA 367 (911)
Q Consensus 291 R~YA~~I~rlLDP~g~lFg~~~l~~RIisresg---~~KsL~~ifp~~~~~~~mvVIIDDR~dVW~~~~~~~i~vV~~Y~ 367 (911)
+.||..|++.|||.++||. +||++|+++ ..|+|.++|+ ++++++|||||+.++|..+ +|.+.|.+|.
T Consensus 101 ~~yA~~vl~~LDp~~~~f~-----~ri~sr~~~g~~~~KdL~~L~~---~dl~~viiiDd~~~~~~~~--pN~I~i~~~~ 170 (372)
T 3ef0_A 101 KAYAKEVAKIIDPTGKLFQ-----DRVLSRDDSGSLAQKSLRRLFP---CDTSMVVVIDDRGDVWDWN--PNLIKVVPYE 170 (372)
T ss_dssp HHHHHHHHHHHCTTSCSSS-----SCEECTTTSSCSSCCCGGGTCS---SCCTTEEEEESCSGGGTTC--TTEEECCCCC
T ss_pred HHHHHHHHHHHCCCCCEEE-----EEEEEECCCCCCCEECHHHHCC---CCCCEEEEEECCHHHCCCC--CCEEEECCCC
T ss_conf 7889999998564775430-----0799853779701203789619---9974299995887872789--8676647863
Q ss_pred CCCCC---------H----------------------------------HH---------HCCCCCHHHHHHHHHHHHCC
Q ss_conf 76670---------3----------------------------------33---------21567238999999953002
Q 002537 368 PYYAP---------Q----------------------------------AE---------ANNAIPVLCVARNIACNVRG 395 (911)
Q Consensus 368 pf~~~---------q----------------------------------~e---------~~~~~p~L~~a~~vl~~Vh~ 395 (911)
||... . +| ..+.++.|..+.++|.+||.
T Consensus 171 ~f~~~~d~n~~~lp~~~~~~~~~~~~~~~~~~~q~~~~p~~~~q~~l~~~e~~~~~~~~~~~d~D~~L~~~~~~L~~iH~ 250 (372)
T 3ef0_A 171 FFVGIGDINSNFLSGNREALEEQNKERVTALELQKSERPLAKQQNALLEDEGKPTPSHTLLHNRDHELERLEKVLKDIHA 250 (372)
T ss_dssp CSTTCCCTTC--------CCGGGGHHHHHHHHHHHHHCHHHHHHHHHHHSCCSCSGGGCSCCCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 45876754443356641357776666544455430136156777764100013330103456876999999999999999
Q ss_pred CCHHCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCC--CCCCCCH--HHHHHHHHHHHHHCCC
Q ss_conf 1000001335310243111576789999987444010244433468988866--6788532--8999998875421001
Q 002537 396 GFFKEFDEGLLQRIPEISYEDDVKDIPSPPDVSNYLVSEDDAATANGIKDPL--SFDGMAD--AEVERRLKEAIAASAT 470 (911)
Q Consensus 396 ~FF~~~D~~l~~ri~ev~~e~~~~~~~~~pDV~n~~~~e~~~~~~~g~~~~~--~~~gm~~--~everrl~~~~~~~~~ 470 (911)
.||.++|...... .. ...|||+. ++.+.+..++.||...+ .+.++.. .+-.+++-++.++..+
T Consensus 251 ~Ff~~~~~~~~~~-------~~----~~~~dv~~-ii~~lk~~~L~G~~ivfSG~~~~~~~~~~~~l~~l~~~lGa~v~ 317 (372)
T 3ef0_A 251 VYYEEENDISSRS-------GN----HKHANVGL-IIPKMKQKVLKGCRLLFSGVIPLGVDVLSSDIAKWAMSFGAEVV 317 (372)
T ss_dssp HHHHHHHHHHHHT-------TT----SSCCCHHH-HHHHHHTTTSTTCEEEEESSSCTTSCTTTSHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHCCCC-------CC----CCCCCHHH-HHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCEEE
T ss_conf 9998775402344-------55----66660888-89998763128968999252578764658999999997399993
No 3
>1qu6_A Protein kinase PKR; dsRNA-binding domain, solution structure, transferase; NMR {Homo sapiens} SCOP: d.50.1.1 d.50.1.1
Probab=1.00 E-value=1 Score=246.20 Aligned_cols=161 Identities=19% Similarity=0.201 Sum_probs=132.7
Q ss_pred CCCCCHHHHHHHHHHCCCCEEEEEEEE--CCCCCEEEEEEEECCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 999953899999994499848999431--589850999999999899986417889999999999999998531012368
Q 002537 703 STETPSGVLQDIAMKCGTKVEFRPALV--ASTELQFSIEAWFAGEKIGEGIGRTRREAQRQAAEGSIKHLANVYMLRVKS 780 (911)
Q Consensus 703 ~~~n~Ks~LQE~~Qk~~~~v~Ye~i~~--~~Hd~~FTveV~I~Ge~~GeG~GkSKKEAEq~AAk~AL~~L~~~~~~~~~p 780 (911)
.++|||+.||||+|+.+..++|+++.. ++|++.|+++|+|+|+.+++|.|+|||+|||+||+.||..|...... .
T Consensus 11 ~~~n~ks~LqE~~q~~~~~p~Y~~~~~~Gp~h~~~F~~~v~v~g~~~~~G~G~sKK~Aeq~AA~~al~~L~~~~~~-~-- 87 (179)
T 1qu6_A 11 SAGFFMEELNTYRQKQGVVLKYQELPNSGPPHDRRFTFQVIIDGREFPEGEGRSKKEAKNAAAKLAVEILNKEKKA-V-- 87 (179)
T ss_dssp SSCSHHHHHHHHHHHHTCCCEEEEEESCBTTTBCCEEEEEESSSSCCCEEECCSSHHHHHHHHHHHHHHHHSCCSC-C--
T ss_pred CCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCEEEEEEEECCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCC-C--
T ss_conf 8878899999999867999748996432899897399999999999886487998999999999999997402666-7--
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 99999898987677667665565666799988778777789887778764588788883799999888419823576429
Q 002537 781 DSGSGHGDGSRFSNANENCFMGEINSFGGQPLAKDESLSSEPSKLVDPRLEGSKKLMGSVSALKELCMTEGLGVVFQQQP 860 (911)
Q Consensus 781 ~~~~~~~D~s~~~~~~eN~~~~d~ns~~~~~~~~~~~stSe~s~~~~~~~~~s~~~~NyIglLNELCqkegl~v~f~~~~ 860 (911)
++.. . .....++.. ...|||++||||||+.+|.+.|..+.
T Consensus 88 -------~p~~------------------~----~~~~~~e~~-----------~~~n~~~~L~E~~qk~~~~~~Y~~~~ 127 (179)
T 1qu6_A 88 -------SPLL------------------L----TTTNSSEGL-----------SMGNYIGLINRIAQKKRLTVNYEQCA 127 (179)
T ss_dssp -------SCSS------------------C----CCSCSSCCC-----------CCCCCHHHHHHHHHHSCCEEEEEEEE
T ss_pred -------CCCC------------------C----CCCCCCCCC-----------CCCCHHHHHHHHHHHCCCCCEEEECC
T ss_conf -------8766------------------7----777765556-----------77888899999998559962688567
Q ss_pred CCCCCCCCCCCEEEEEEECCEEECEEECCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 9998998887199999999799720013899999999999999998710
Q 002537 861 PSSANSVQKDEVYAQVEIDGQVLGKGIGSTWDEAKMQVFLLDIQNFLAL 909 (911)
Q Consensus 861 ~~~sgg~h~~eF~~qVeIdGk~yg~G~GsTKKEAKqqAAklAl~kl~~~ 909 (911)
.|++|.+.|+|+|+|+++.|+.|.|+|||+||++||+.||.+|..-
T Consensus 128 ---~G~~h~~~F~~~v~v~~~~~~~g~g~sKK~Ak~~AA~~al~~L~~~ 173 (179)
T 1qu6_A 128 ---SGVHGPEGFHYKCKMGQKEYSIGTGSTKQEAKQLAAKLAYLQILSE 173 (179)
T ss_dssp ---ECSSSSSEEEEEEEEETTBCCEEEESSHHHHHHHHHHHHHHHHHHC
T ss_pred ---CCCCCCCEEEEEEEECCEEEEEEEECCHHHHHHHHHHHHHHHHHCC
T ss_conf ---6999997089999999999705787999999999999999999655
No 4
>2yt4_A Protein DGCR8; DSRBD, RNA binding domain, RNA binding protein; 2.60A {Homo sapiens}
Probab=1.00 E-value=1 Score=211.13 Aligned_cols=176 Identities=14% Similarity=0.136 Sum_probs=125.9
Q ss_pred CCCCCHHHHHHHHHHCCC-CEEEEEEEECCCCCEEEEEEEECCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 999953899999994499-8489994315898509999999998999864178899999999999999985310123689
Q 002537 703 STETPSGVLQDIAMKCGT-KVEFRPALVASTELQFSIEAWFAGEKIGEGIGRTRREAQRQAAEGSIKHLANVYMLRVKSD 781 (911)
Q Consensus 703 ~~~n~Ks~LQE~~Qk~~~-~v~Ye~i~~~~Hd~~FTveV~I~Ge~~GeG~GkSKKEAEq~AAk~AL~~L~~~~~~~~~p~ 781 (911)
...+||+.||||||+.+. .+.|+++...+.++.|+++|+|+|..+|.|.|+|||+|||+||+.||..|.......+.
T Consensus 20 ~~kd~ks~LqE~~q~~~~~~p~Y~~~~~~Gp~~~F~~~v~v~g~~~~~G~G~SKK~Aeq~AA~~aL~~L~~~~~~~~~-- 97 (232)
T 2yt4_A 20 NGKSEVCILHEYMQRVLKVRPVYNFFECENPSEPFGASVTIDGVTYGSGTASSKKLAKNKAARATLEILIPDFVKQTS-- 97 (232)
T ss_dssp TTSCHHHHHHHHHHHTTCCCCEEEEEECSCTTSCEEEEEEETTEEEEEEEESSHHHHHHHHHHHHHHHHSTTTTTC----
T ss_pred CCCCHHHHHHHHHHHCCCCCCEEEEEEEECCCCCEEEEEEECCEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCC--
T ss_conf 999989999999997699998379976078999689999999999765178988999999999999999865556677--
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEE--C
Q ss_conf 99998989876776676655656667999887787777898877787645887888837999998884198235764--2
Q 002537 782 SGSGHGDGSRFSNANENCFMGEINSFGGQPLAKDESLSSEPSKLVDPRLEGSKKLMGSVSALKELCMTEGLGVVFQQ--Q 859 (911)
Q Consensus 782 ~~~~~~D~s~~~~~~eN~~~~d~ns~~~~~~~~~~~stSe~s~~~~~~~~~s~~~~NyIglLNELCqkegl~v~f~~--~ 859 (911)
.. + .+++ .+.+.+. .... +.++..... ......||+++|+| ||+.++.++.+. +
T Consensus 98 -~~---~--------~~~~-~~~~~~~-------~~~~-~~~~~~~~~--~~~~~~d~kt~LqE-~~~~~~~~p~Y~~~~ 153 (232)
T 2yt4_A 98 -EE---K--------PKDS-EELEYFN-------HISI-EDSRVYELT--SKAGLLSPYQILHE-CLKRNHGMGDTSIKF 153 (232)
T ss_dssp ------------------C-CGGGGGG-------GSBT-TCTTHHHHH--HHHTCCCHHHHHHH-HHHTSSSCCCEEEEC
T ss_pred -CC---C--------CCCC-CCHHHCC-------CCCC-CCCCCCCCC--CCCCCCCHHHHHHH-HHHCCCCCCCEEEEE
T ss_conf -54---4--------5563-1010113-------5565-677644566--55578886579999-998079998158887
Q ss_pred CCCCCCCCCCCCEEEEEEECCEEECEEECCCHHHHHHHHHHHHHHHHHH
Q ss_conf 9999899888719999999979972001389999999999999999871
Q 002537 860 PPSSANSVQKDEVYAQVEIDGQVLGKGIGSTWDEAKMQVFLLDIQNFLA 908 (911)
Q Consensus 860 ~~~~sgg~h~~eF~~qVeIdGk~yg~G~GsTKKEAKqqAAklAl~kl~~ 908 (911)
..++|++|.++|+++|. ..++.|+|+|||+|||+||+.||..|..
T Consensus 154 -~~~~Gp~h~~~F~~~v~---~~~~~G~G~sKK~Aeq~AA~~aL~~L~~ 198 (232)
T 2yt4_A 154 -EVVPGKNQKSEYVMACG---KHTVRGWCKNKRVGKQLASQKILQLLHP 198 (232)
T ss_dssp -C------CCEEEEEEET---TEEEEEEESSHHHHHHHHHHHHHHHHST
T ss_pred -EECCCCCCCCEEEEEEE---EEEEEEEECCHHHHHHHHHHHHHHHHHH
T ss_conf -63479997988999998---7999998699999999999999999976
No 5
>2l3j_A Double-stranded RNA-specific editase 1; editing, dsRNA recognition, DSRBM, hydrolase-RNA complex; NMR {Rattus norvegicus}
Probab=1.00 E-value=1 Score=181.84 Aligned_cols=195 Identities=19% Similarity=0.206 Sum_probs=120.5
Q ss_pred CCCCHHHHHHHHHHCCCCEEEEEEEE--CCCCCEEEEEEEECCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 99953899999994499848999431--5898509999999998999864178899999999999999985310123689
Q 002537 704 TETPSGVLQDIAMKCGTKVEFRPALV--ASTELQFSIEAWFAGEKIGEGIGRTRREAQRQAAEGSIKHLANVYMLRVKSD 781 (911)
Q Consensus 704 ~~n~Ks~LQE~~Qk~~~~v~Ye~i~~--~~Hd~~FTveV~I~Ge~~GeG~GkSKKEAEq~AAk~AL~~L~~~~~~~~~p~ 781 (911)
+-++|+.|+++++. ...+.|+++.. ++|+++|+++|+|+|+.+ +|.|+|||+|||+||+.||..|.........+.
T Consensus 3 ~~~~K~~l~~l~e~-~~~p~Y~~~~~~Gp~H~~~F~~~v~v~g~~~-~G~G~SKK~Aeq~AA~~al~~l~~~~~~~~~~~ 80 (236)
T 2l3j_A 3 PVLPKNALMQLNEI-KPGLQYMLLSQTGPVHAPLFVMSVEVNGQVF-EGSGPTKKKAKLHAAEKALRSFVQFPNASEAHL 80 (236)
T ss_dssp CCCTHHHHHHHHHH-CSSCEEEEEEEESCTTSCEEEEEEEETTEEE-EEEESHHHHHHHHHHHHHHHHHTTCSSCSCCCC
T ss_pred CCCCCCHHHHHHHC-CCCCEEEEEECCCCCCCCEEEEEEEECCEEE-EEECCCHHHHHHHHHHHHHHHHHHCCCCCCCHH
T ss_conf 89986899999616-7996699975308998973999999999999-975588589999999999999874456420013
Q ss_pred C-C---CCCCCCCCC----CCCCCCCCCC----CC----CCCCCCCCCCCC-CCC----------CCCCCCCCCCCCCCC
Q ss_conf 9-9---998989876----7766766556----56----667999887787-777----------898877787645887
Q 002537 782 S-G---SGHGDGSRF----SNANENCFMG----EI----NSFGGQPLAKDE-SLS----------SEPSKLVDPRLEGSK 834 (911)
Q Consensus 782 ~-~---~~~~D~s~~----~~~~eN~~~~----d~----ns~~~~~~~~~~-~st----------Se~s~~~~~~~~~s~ 834 (911)
. + ....|++.. +...-+++-. +. ...+........ ... .++.. ....+ .+.
T Consensus 81 amg~~~~~~~d~~~d~~~~p~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~p-~~~~~-~~~ 158 (236)
T 2l3j_A 81 AMGRTLSVNTDFTSDQADFPDTLFNGFETPDKSEPPFYVGSNGDDSFSSSGDVSLSASPVPASLTQPPLP-IPPPF-PPP 158 (236)
T ss_dssp SCCCCCCCTTSCCSCCSCCCCCCCCCCCCSSSSCCCSSCSSSCSSSSSCSCCCSSCCCCCCCCSSSCSSS-SCCCC-CCC
T ss_pred HHCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCC-CCCCC-CCC
T ss_conf 3235788777776654445301103446666554311111235554445411110111133211245676-65455-777
Q ss_pred CCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEEEEEEECCEEECEEECCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 888837999998884198235764299998998887199999999799720013899999999999999998710
Q 002537 835 KLMGSVSALKELCMTEGLGVVFQQQPPSSANSVQKDEVYAQVEIDGQVLGKGIGSTWDEAKMQVFLLDIQNFLAL 909 (911)
Q Consensus 835 ~~~NyIglLNELCqkegl~v~f~~~~~~~sgg~h~~eF~~qVeIdGk~yg~G~GsTKKEAKqqAAklAl~kl~~~ 909 (911)
...||+++|+||| ....|... .+.|+.|.+.|+++|.|+|++| .|.|+|||+|||+||+.||.+|...
T Consensus 159 ~~~d~ks~LqE~~----~~p~Y~~~--~~~Gp~h~~~F~~~v~v~~~~~-~G~G~sKK~Aeq~AA~~al~~L~~~ 226 (236)
T 2l3j_A 159 SGKNPVMILNELR----PGLKYDFL--SESGESHAKSFVMSVVVDGQFF-EGSGRNKKLAKARAAQSALATVFNL 226 (236)
T ss_dssp SSCCHHHHHHHHC----CCEEEEEE--CCSSSSSSCCEEEEEEETTEEE-EEEESSHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHCC----CCCCEEEE--EEECCCCCCEEEEEEEECCEEE-EEEECCHHHHHHHHHHHHHHHHCCC
T ss_conf 7889889999648----89708998--7368999982999999999999-9665999999999999999987063
No 6
>3qle_A TIM50P; chaperone, mitochondrion, preprotein translocation; HET: 1PE; 1.83A {Saccharomyces cerevisiae EC1118}
Probab=1.00 E-value=1 Score=148.12 Aligned_cols=113 Identities=12% Similarity=0.088 Sum_probs=89.9
Q ss_pred EEEEECCCHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCC-----C-CCCCHHHH
Q ss_conf 89960867166788884611355899999479178999999830999985356567780686047-----9-84443333
Q 002537 258 VLVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKS-----G-SRKSLFNV 331 (911)
Q Consensus 258 ~~vKLRPgv~eLr~FL~a~~sk~FElyVyTmG~R~YA~~I~rlLDP~g~lFg~~~l~~RIisres-----g-~~KsL~~i 331 (911)
+++++|||+++ ||+ .+++.|||+|||++.+.||..|++.|||.+.+|. .|+ +|++ | ..|+|..+
T Consensus 56 ~~v~~RPgl~e---FL~-~l~~~yeivI~Tas~~~ya~~vl~~LDp~~~~f~-----~rl-~R~~c~~~~g~y~KdL~~L 125 (204)
T 3qle_A 56 WRTAKRPGADY---FLG-YLSQYYEIVLFSSNYMMYSDKIAEKLDPIHAFVS-----YNL-FKEHCVYKDGVHIKDLSKL 125 (204)
T ss_dssp EEEEECTTHHH---HHH-HHTTTEEEEEECSSCHHHHHHHHHHTSTTCSSEE-----EEE-CGGGSEEETTEEECCGGGS
T ss_pred EEEEECCCHHH---HHH-HHHHCCEEEEECCCCHHHHHHHHHHHCCCCCEEE-----EEE-EECCEEEECCEEEECHHHH
T ss_conf 46886779999---999-9983887999928967999999999689877588-----999-9635467788165108873
Q ss_pred CCCCCCCCCEEEEECCCCCCCCCCCCCCEEEECCCCCCCCCHHHHCCCCCHHHHHHHHHHHHC
Q ss_conf 168998996799982983369999999869933666766703332156723899999995300
Q 002537 332 FQDGTCHPKMALVIDDRLKVWDDKDQPRVHVVPAFAPYYAPQAEANNAIPVLCVARNIACNVR 394 (911)
Q Consensus 332 fp~~~~~~~mvVIIDDR~dVW~~~~~~~i~vV~~Y~pf~~~q~e~~~~~p~L~~a~~vl~~Vh 394 (911)
- .+++.+|||||+..+|..+. .|.+.|++|. .. .+. .|.....+|..+.
T Consensus 126 g----rdl~~vIiIDDsp~~~~~~p-~N~I~I~~~~--~~------~D~-eL~~L~~~L~~L~ 174 (204)
T 3qle_A 126 N----RDLSKVIIIDTDPNSYKLQP-ENAIPMEPWN--GE------ADD-KLVRLIPFLEYLA 174 (204)
T ss_dssp C----SCGGGEEEEESCTTTTTTCG-GGEEECCCCC--SS------CCC-HHHHHHHHHHHHH
T ss_pred C----CCHHHEEEEECCHHHHHHCC-CCCEEEEEEC--CC------CCH-HHHHHHHHHHHHH
T ss_conf 9----99678999978889874096-5735740278--99------976-4999999999986
No 7
>2ght_A Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1; protein-peptide complex, HAD superfamily, hydrolase; HET: SEP; 1.80A {Homo sapiens} PDB: 2ghq_A* 3pgl_A* 1t9z_A* 1ta0_A* 3l0c_A 3l0y_A 3l0b_A* 2q5e_A
Probab=1.00 E-value=1 Score=134.20 Aligned_cols=115 Identities=20% Similarity=0.138 Sum_probs=89.3
Q ss_pred CEEEEEECCCHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCC------CCCCHH
Q ss_conf 33899608671667888846113558999994791789999998309999853565677806860479------844433
Q 002537 256 TSVLVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSG------SRKSLF 329 (911)
Q Consensus 256 ~~~~vKLRPgv~eLr~FL~a~~sk~FElyVyTmG~R~YA~~I~rlLDP~g~lFg~~~l~~RIisresg------~~KsL~ 329 (911)
..+++++|||+.+ ||+ .++++||+.|||++.+.||..+++.|||.+ +|. .| +++++. ..|.|.
T Consensus 50 ~~~~v~~rPg~~e---fL~-~l~~~~~i~I~T~~~~~~a~~vl~~ld~~~-~f~-----~~-~~rd~~~~~k~~~~k~L~ 118 (181)
T 2ght_A 50 HQVYVLKRPHVDE---FLQ-RMGELFECVLFTASLAKYADPVADLLDKWG-AFR-----AR-LFRESCVFHRGNYVKDLS 118 (181)
T ss_dssp EEEEEEECTTHHH---HHH-HHHHHSEEEEECSSCHHHHHHHHHHHCTTC-CEE-----EE-ECGGGSEEETTEEECCGG
T ss_pred EEEEEEECCCHHH---HHH-HHHHCCCEEEECCCCHHHHHHHHHHHCCCC-CEE-----EE-EECCCCEECCCCEECCHH
T ss_conf 7899976879999---999-998279999993998899999999879877-578-----99-965572625996763477
Q ss_pred HHCCCCCCCCCEEEEECCCCCCCCCCCCCCEEEECCCCCCCCCHHHHCCCCCHHHHHHHHHHHHC
Q ss_conf 33168998996799982983369999999869933666766703332156723899999995300
Q 002537 330 NVFQDGTCHPKMALVIDDRLKVWDDKDQPRVHVVPAFAPYYAPQAEANNAIPVLCVARNIACNVR 394 (911)
Q Consensus 330 ~ifp~~~~~~~mvVIIDDR~dVW~~~~~~~i~vV~~Y~pf~~~q~e~~~~~p~L~~a~~vl~~Vh 394 (911)
.+. .+++.+|||||+...|.....|.| .|.+|. ..+ .+..|...+.+|..++
T Consensus 119 ~Lg----~~~~~~vivdDs~~~~~~~~~ngi-~i~~~~--~~~------~D~eL~~l~~~L~~l~ 170 (181)
T 2ght_A 119 RLG----RDLRRVLILDNSPASYVFHPDNAV-PVASWF--DNM------SDTELHDLLPFFEQLS 170 (181)
T ss_dssp GTC----SCGGGEEEECSCGGGGTTCTTSBC-CCCCCS--SCT------TCCHHHHHHHHHHHHT
T ss_pred HHC----CCCCEEEEEECCHHHHCCCCCCEE-EECCCC--CCC------CHHHHHHHHHHHHHHC
T ss_conf 939----882509999598777322727774-825556--899------8379999999999867
No 8
>2hhl_A CTD small phosphatase-like protein; CTD phosphatase, keggins anion, structural genomics, PSI, protein structure initiative; HET: KEG; 2.10A {Homo sapiens}
Probab=1.00 E-value=1 Score=132.35 Aligned_cols=117 Identities=17% Similarity=0.095 Sum_probs=90.4
Q ss_pred CEEEEEECCCHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCC------CCCCHH
Q ss_conf 33899608671667888846113558999994791789999998309999853565677806860479------844433
Q 002537 256 TSVLVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSG------SRKSLF 329 (911)
Q Consensus 256 ~~~~vKLRPgv~eLr~FL~a~~sk~FElyVyTmG~R~YA~~I~rlLDP~g~lFg~~~l~~RIisresg------~~KsL~ 329 (911)
..+++++|||+.+ ||+ .++++||+.|||++.+.||..+++.|||.+ +|. . ++++++. ..|.|.
T Consensus 63 ~~~~v~~RPgv~e---fL~-~l~~~~~i~I~Tss~~~~a~~vl~~ld~~~-~f~-----~-~l~rd~~~~~k~~~lK~L~ 131 (195)
T 2hhl_A 63 HQVYVLKRPHVDE---FLQ-RMGQLFECVLFTASLAKYADPVADLLDRWG-VFR-----A-RLFRESCVFHRGNYVKDLS 131 (195)
T ss_dssp EEEEEEECTTHHH---HHH-HHHHHSEEEEECSSCHHHHHHHHHHHCCSS-CEE-----E-EECGGGCEEETTEEECCGG
T ss_pred EEEEEEECCCHHH---HHH-HHHCCCEEEEECCCCHHHHHHHHHHHCCCC-CEE-----E-EEECCCCEECCCCEEEEHH
T ss_conf 5688876868999---999-997298499991897899999999759715-489-----9-9975465515994553486
Q ss_pred HHCCCCCCCCCEEEEECCCCCCCCCCCCCCEEEECCCCCCCCCHHHHCCCCCHHHHHHHHHHHHCCC
Q ss_conf 3316899899679998298336999999986993366676670333215672389999999530021
Q 002537 330 NVFQDGTCHPKMALVIDDRLKVWDDKDQPRVHVVPAFAPYYAPQAEANNAIPVLCVARNIACNVRGG 396 (911)
Q Consensus 330 ~ifp~~~~~~~mvVIIDDR~dVW~~~~~~~i~vV~~Y~pf~~~q~e~~~~~p~L~~a~~vl~~Vh~~ 396 (911)
.+- .+++.+|||||+...|.... .+.+.|.+|.. . ..+-.|...+.+|..++..
T Consensus 132 ~Lg----~~~~~~vivDDs~~~~~~~~-~ngi~i~~~~~--~------~~D~eL~~L~~~L~~l~~~ 185 (195)
T 2hhl_A 132 RLG----RELSKVIIVDNSPASYIFHP-ENAVPVQSWFD--D------MTDTELLDLIPFFEGLSRE 185 (195)
T ss_dssp GSS----SCGGGEEEEESCGGGGTTCG-GGEEECCCCSS--C------TTCCHHHHHHHHHHHHHC-
T ss_pred HHC----CCHHHEEEEECCHHHHHHCC-CCCCEEEEECC--C------CCHHHHHHHHHHHHHHHHC
T ss_conf 729----99657999979889864373-47127724358--9------9727899999999999848
No 9
>1x49_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1
Probab=1.00 E-value=1 Score=131.51 Aligned_cols=72 Identities=17% Similarity=0.259 Sum_probs=65.8
Q ss_pred CCCCCHHHHHHHHHHCCCCEEEEEEEE--CCCCCEEEEEEEECCEEEEEEECCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999953899999994499848999431--589850999999999899986417889999999999999998531
Q 002537 703 STETPSGVLQDIAMKCGTKVEFRPALV--ASTELQFSIEAWFAGEKIGEGIGRTRREAQRQAAEGSIKHLANVY 774 (911)
Q Consensus 703 ~~~n~Ks~LQE~~Qk~~~~v~Ye~i~~--~~Hd~~FTveV~I~Ge~~GeG~GkSKKEAEq~AAk~AL~~L~~~~ 774 (911)
.+.|||+.||||||+.+..++|+++.. ++|++.|+++|+|+|+.+|+|.|+|||+|||+||+.||..|....
T Consensus 12 ~~~n~Kt~LqE~~Q~~~~~p~Y~~~~~~Gp~H~~~F~v~v~i~g~~~~~G~G~SKK~Aeq~AA~~AL~~L~~~~ 85 (97)
T 1x49_A 12 TPGFYMDKLNKYRQMHGVAITYKELSTSGPPHDRRFTFQVLIDEKEFPEAKGRSKQEARNAAAKLAVDILDNEN 85 (97)
T ss_dssp CTTHHHHHHHHHHHHHTCCEEEEEEEEESCSSSCEEEEEEEESSCCCCCEEESSHHHHHHHHHHHHHHHHTTTC
T ss_pred CCCCHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCEEEEEEECCEEEEEEEECCHHHHHHHHHHHHHHHHHHHC
T ss_conf 98798999999999759998699987558998985899999999999897419999999999999999977424
No 10
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=1.00 E-value=1 Score=131.22 Aligned_cols=120 Identities=16% Similarity=0.188 Sum_probs=89.1
Q ss_pred EEEECCCHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHCCCCCC-CCCCCCCCCEE-------EC---CCC--CC
Q ss_conf 9960867166788884611355899999479178999999830999985-35656778068-------60---479--84
Q 002537 259 LVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNL-INTKELLDRIV-------CV---KSG--SR 325 (911)
Q Consensus 259 ~vKLRPgv~eLr~FL~a~~sk~FElyVyTmG~R~YA~~I~rlLDP~g~l-Fg~~~l~~RIi-------sr---esg--~~ 325 (911)
++.+|||+++ ||+ .++++||++|||++.+.||..|++.|||.+.+ |. .|++ +. +.| ..
T Consensus 162 ~~~~RP~l~e---FL~-~l~~~yeivIfTas~~~ya~~vld~Ld~~~~~~~~-----~~~~r~~~~~~~~~~~~~g~~~v 232 (320)
T 3shq_A 162 TELMRPYLHE---FLT-SAYEDYDIVIWSATSMRWIEEKMRLLGVASNDNYK-----VMFYLDSTAMISVHVPERGVVDV 232 (320)
T ss_dssp HHHBCTTHHH---HHH-HHHHHEEEEEECSSCHHHHHHHHHHTTCTTCSSCC-----CCEEECGGGCEEEEETTTEEEEE
T ss_pred CEEECCCHHH---HHH-HHHHCCEEEEECCCCHHHHHHHHHHHCCCCCCCEE-----EEEEECCCCCCCCCCCCCCCEEE
T ss_conf 2575889999---999-99857779998288589999999986877775565-----99998277000454357797788
Q ss_pred CCHHHH---CCCCCCCCCEEEEECCCCCCCCCCCCCCEEEECCCCCCCCCHHHHCCCCCHHHHHHHHHHHHC
Q ss_conf 443333---168998996799982983369999999869933666766703332156723899999995300
Q 002537 326 KSLFNV---FQDGTCHPKMALVIDDRLKVWDDKDQPRVHVVPAFAPYYAPQAEANNAIPVLCVARNIACNVR 394 (911)
Q Consensus 326 KsL~~i---fp~~~~~~~mvVIIDDR~dVW~~~~~~~i~vV~~Y~pf~~~q~e~~~~~p~L~~a~~vl~~Vh 394 (911)
|+|..+ ||+ .+.+.+|||||+...|..+. .|.+.|++|.. ...+. ..+..|.....+|..+.
T Consensus 233 KdLs~Lw~~~p~--rdl~~tIiIDdsp~~~~~~p-~NgI~I~~~~~--~~~~~--~~D~eL~~L~~~L~~L~ 297 (320)
T 3shq_A 233 KPLGVIWALYKQ--YNSSNTIMFDDIRRNFLMNP-KSGLKIRPFRQ--AHLNR--GTDTELLKLSDYLRKIA 297 (320)
T ss_dssp CCHHHHHHHCTT--CCGGGEEEEESCGGGGTTSG-GGEEECCCCCC--HHHHT--TTCCHHHHHHHHHHHHH
T ss_pred EEHHHHHCCCCC--CCHHHEEEEECCHHHHCCCC-CCEEEECEECC--CCCCC--CCCHHHHHHHHHHHHHH
T ss_conf 782885411578--98467899968867746286-76678374817--87789--86687999999999985
Done!