BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002538
(911 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 46.6 bits (109), Expect = 7e-05, Method: Composition-based stats.
Identities = 35/117 (29%), Positives = 61/117 (52%), Gaps = 7/117 (5%)
Query: 494 KEKENI--LVYAGTGLAVAP-GV-EGWEKVKRLLLMKNHIKHLPD--IPTCPHLLTLFLS 547
KE N+ L+ G L P GV + +K L+L++N ++ LPD +L L L+
Sbjct: 82 KELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLA 141
Query: 548 HNQLRWISEDFFQFMPSLKVLNLSFTKRHKFPSGI-SKLASLQLIDLSYTSIRGLPE 603
HNQL+ + + F + +L L+LS+ + P G+ KL L+ + L ++ +P+
Sbjct: 142 HNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPD 198
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 34/133 (25%), Positives = 65/133 (48%), Gaps = 3/133 (2%)
Query: 512 GVEGWEKVKRLLLMKNHIKHLPDIPTCPHLLTLFLSHNQLRWISEDFFQFMPSLKVLNLS 571
G++ V+ L L N + + + +L L L+ NQL+ + F + +LK L L
Sbjct: 58 GIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLV 117
Query: 572 FTKRHKFPSGI-SKLASLQLIDLSYTSIRGLPEEL-KALINLKCLNLDQTKFLVTIPRHL 629
+ P G+ KL +L ++L++ ++ LP+ + L NL L+L + L ++P +
Sbjct: 118 ENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQ-LQSLPEGV 176
Query: 630 ISSFSMLHVLRMF 642
+ L LR++
Sbjct: 177 FDKLTQLKDLRLY 189
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 65/144 (45%), Gaps = 9/144 (6%)
Query: 484 MALWIAS--EIEKEKENILVYAGTGLAVAPGVEGWEKVKRLLLMKNHIKHL--PDIPTCP 539
+AL + S E E+++ Y+ L P + + K L L +N I L PDI
Sbjct: 18 LALIVGSMTPFSNELESMVDYSNRNLTHVPK-DLPPRTKALSLSQNSISELRMPDISFLS 76
Query: 540 HLLTLFLSHNQLRWISEDFFQFMPSLKVLNLSFTKRHKFPSGISKLASLQLIDLSYTSIR 599
L L LSHN++R + F F L+ L++S + +ASL+ +DLS+
Sbjct: 77 ELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNI--SCCPMASLRHLDLSFNDFD 134
Query: 600 GLP--EELKALINLKCLNLDQTKF 621
LP +E L L L L KF
Sbjct: 135 VLPVCKEFGNLTKLTFLGLSAAKF 158
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%)
Query: 541 LLTLFLSHNQLRWISEDFFQFMPSLKVLNLSFTKRHKFPSGISKLASLQLIDLSYTSI 598
L L L HNQ+R I F+P+L+ L+L K + P+G+ L LQ++ L +I
Sbjct: 219 LYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNI 276
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 42.0 bits (97), Expect = 0.002, Method: Composition-based stats.
Identities = 34/132 (25%), Positives = 62/132 (46%), Gaps = 3/132 (2%)
Query: 512 GVEGWEKVKRLLLMKNHIKHLPDIPTCPHLLTLFLSHNQLRWISEDFFQFMPSLKVLNLS 571
G++ V+ L L N + + + +L L L+ NQL+ + F + +LK L L
Sbjct: 58 GIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLV 117
Query: 572 FTKRHKFPSGI-SKLASLQLIDLSYTSIRGLPEEL-KALINLKCLNLDQTKFLVTIPRHL 629
+ P G+ KL +L + L + ++ LP+ + L NL L+LD + L ++P +
Sbjct: 118 ENQLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQ-LQSLPEGV 176
Query: 630 ISSFSMLHVLRM 641
+ L L +
Sbjct: 177 FDKLTQLKQLSL 188
Score = 30.0 bits (66), Expect = 6.8, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Query: 522 LLLMKNHIKHLPD--IPTCPHLLTLFLSHNQLRWISEDFFQFMPSLKVLNLSFTKRHKFP 579
L L N ++ LP +L L L +NQL+ + E F + LK L+L+ + P
Sbjct: 138 LYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSVP 197
Query: 580 SGI-SKLASLQLI 591
G+ +L SL I
Sbjct: 198 DGVFDRLTSLTHI 210
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 35/122 (28%), Positives = 58/122 (47%), Gaps = 5/122 (4%)
Query: 522 LLLMKNHIKHLPD--IPTCPHLLTLFLSHNQLRWISEDFFQFMPSLKVLNLSFTKRHKFP 579
L L N +K LP+ L L+L N+L+ + F + SL LNLS + P
Sbjct: 33 LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLP 92
Query: 580 SGI-SKLASLQLIDLSYTSIRGLPEEL-KALINLKCLNLDQTKFLVTIPRHLISSFSMLH 637
+G+ KL L+ + L+ ++ LP+ + L LK L L Q + L ++P + + L
Sbjct: 93 NGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQ 151
Query: 638 VL 639
+
Sbjct: 152 YI 153
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 48/104 (46%), Gaps = 3/104 (2%)
Query: 540 HLLTLFLSHNQLRWISEDFFQFMPSLKVLNLSFTKRHKFPSGI-SKLASLQLIDLSYTSI 598
+L L L NQL+ + F + L L+L + + P G+ KL SL+ + L +
Sbjct: 110 NLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQL 169
Query: 599 RGLPE-ELKALINLKCLNLDQTKFLVTIPRHLISSFSMLHVLRM 641
+ +PE L LK L LD + L +P S L +L++
Sbjct: 170 KRVPEGAFDKLTELKTLKLDNNQ-LKRVPEGAFDSLEKLKMLQL 212
Score = 37.4 bits (85), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 68/145 (46%), Gaps = 9/145 (6%)
Query: 519 VKRLLLMKNHIKHLPDIPTCPHLLT----LFLSHNQLRWISEDFFQFMPSLKVLNLSFTK 574
K+L L N + LP H LT L+L+ N+L+ + F+ + +L+ L ++ K
Sbjct: 39 TKKLDLQSNKLSSLPS--KAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK 96
Query: 575 RHKFPSGI-SKLASLQLIDLSYTSIRGLPEEL-KALINLKCLNLDQTKFLVTIPRHLISS 632
P G+ +L +L + L ++ LP + +L L L+L + L ++P+ +
Sbjct: 97 LQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE-LQSLPKGVFDK 155
Query: 633 FSMLHVLRMFGSGSSVFHEASGDSI 657
+ L LR++ + E + D +
Sbjct: 156 LTSLKELRLYNNQLKRVPEGAFDKL 180
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 38.9 bits (89), Expect = 0.013, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 47/91 (51%), Gaps = 2/91 (2%)
Query: 516 WEKVKRLLLMKNHIKHLPDIPTCPHLLTLFLSHNQLRWISEDFFQFMPSLKVLNLSFTKR 575
+ ++ +L L + + L T P L TL LSHNQL+ + Q +P+L VL++SF +
Sbjct: 54 YTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPL-LGQTLPALTVLDVSFNRL 112
Query: 576 HKFPSG-ISKLASLQLIDLSYTSIRGLPEEL 605
P G + L LQ + L ++ LP L
Sbjct: 113 TSLPLGALRGLGELQELYLKGNELKTLPPGL 143
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 38.9 bits (89), Expect = 0.013, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 47/91 (51%), Gaps = 2/91 (2%)
Query: 516 WEKVKRLLLMKNHIKHLPDIPTCPHLLTLFLSHNQLRWISEDFFQFMPSLKVLNLSFTKR 575
+ ++ +L L + + L T P L TL LSHNQL+ + Q +P+L VL++SF +
Sbjct: 54 YTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPL-LGQTLPALTVLDVSFNRL 112
Query: 576 HKFPSG-ISKLASLQLIDLSYTSIRGLPEEL 605
P G + L LQ + L ++ LP L
Sbjct: 113 TSLPLGALRGLGELQELYLKGNELKTLPPGL 143
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 38.9 bits (89), Expect = 0.013, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 47/91 (51%), Gaps = 2/91 (2%)
Query: 516 WEKVKRLLLMKNHIKHLPDIPTCPHLLTLFLSHNQLRWISEDFFQFMPSLKVLNLSFTKR 575
+ ++ +L L + + L T P L TL LSHNQL+ + Q +P+L VL++SF +
Sbjct: 54 YTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPL-LGQTLPALTVLDVSFNRL 112
Query: 576 HKFPSG-ISKLASLQLIDLSYTSIRGLPEEL 605
P G + L LQ + L ++ LP L
Sbjct: 113 TSLPLGALRGLGELQELYLKGNELKTLPPGL 143
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 38.5 bits (88), Expect = 0.015, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query: 537 TCPHLLTLFLSHNQLRWISEDFFQFMPSLKVLNLSFTKRHKFPSG-ISKLASLQLIDLSY 595
T P L TL LSHNQL+ + Q +P+L VL++SF + P G + L LQ + L
Sbjct: 76 TLPVLGTLDLSHNQLQSLPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 134
Query: 596 TSIRGLPEEL 605
++ LP L
Sbjct: 135 NELKTLPPGL 144
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 38.5 bits (88), Expect = 0.015, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query: 537 TCPHLLTLFLSHNQLRWISEDFFQFMPSLKVLNLSFTKRHKFPSG-ISKLASLQLIDLSY 595
T P L TL LSHNQL+ + Q +P+L VL++SF + P G + L LQ + L
Sbjct: 75 TLPVLGTLDLSHNQLQSLPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 596 TSIRGLPEEL 605
++ LP L
Sbjct: 134 NELKTLPPGL 143
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 38.5 bits (88), Expect = 0.015, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query: 537 TCPHLLTLFLSHNQLRWISEDFFQFMPSLKVLNLSFTKRHKFPSG-ISKLASLQLIDLSY 595
T P L TL LSHNQL+ + Q +P+L VL++SF + P G + L LQ + L
Sbjct: 75 TLPVLGTLDLSHNQLQSLPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 596 TSIRGLPEEL 605
++ LP L
Sbjct: 134 NELKTLPPGL 143
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 38.5 bits (88), Expect = 0.016, Method: Composition-based stats.
Identities = 35/105 (33%), Positives = 52/105 (49%), Gaps = 4/105 (3%)
Query: 537 TCPHLLTLFLSHNQLRWISEDFFQFMPSLKVLNLSFTKRHKFPSG-ISKLASLQLIDLSY 595
T P L TL LSHNQL+ + Q +P+L VL++SF + P G + L LQ + L
Sbjct: 75 TLPVLGTLDLSHNQLQSLPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 596 TSIRGLPEE-LKALINLKCLNLDQTKFLVTIPRHLISSFSMLHVL 639
++ LP L L+ L+L + L +P L++ L L
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNQ-LTELPAGLLNGLENLDTL 177
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 38.5 bits (88), Expect = 0.016, Method: Composition-based stats.
Identities = 35/105 (33%), Positives = 52/105 (49%), Gaps = 4/105 (3%)
Query: 537 TCPHLLTLFLSHNQLRWISEDFFQFMPSLKVLNLSFTKRHKFPSG-ISKLASLQLIDLSY 595
T P L TL LSHNQL+ + Q +P+L VL++SF + P G + L LQ + L
Sbjct: 75 TLPVLGTLDLSHNQLQSLPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 596 TSIRGLPEE-LKALINLKCLNLDQTKFLVTIPRHLISSFSMLHVL 639
++ LP L L+ L+L + L +P L++ L L
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNQ-LTELPAGLLNGLENLDTL 177
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 38.5 bits (88), Expect = 0.016, Method: Composition-based stats.
Identities = 35/105 (33%), Positives = 52/105 (49%), Gaps = 4/105 (3%)
Query: 537 TCPHLLTLFLSHNQLRWISEDFFQFMPSLKVLNLSFTKRHKFPSG-ISKLASLQLIDLSY 595
T P L TL LSHNQL+ + Q +P+L VL++SF + P G + L LQ + L
Sbjct: 75 TLPVLGTLDLSHNQLQSLPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 596 TSIRGLPEE-LKALINLKCLNLDQTKFLVTIPRHLISSFSMLHVL 639
++ LP L L+ L+L + L +P L++ L L
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNQ-LTELPAGLLNGLENLDTL 177
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 38.5 bits (88), Expect = 0.016, Method: Composition-based stats.
Identities = 35/105 (33%), Positives = 52/105 (49%), Gaps = 4/105 (3%)
Query: 537 TCPHLLTLFLSHNQLRWISEDFFQFMPSLKVLNLSFTKRHKFPSG-ISKLASLQLIDLSY 595
T P L TL LSHNQL+ + Q +P+L VL++SF + P G + L LQ + L
Sbjct: 75 TLPVLGTLDLSHNQLQSLPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 596 TSIRGLPEE-LKALINLKCLNLDQTKFLVTIPRHLISSFSMLHVL 639
++ LP L L+ L+L + L +P L++ L L
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNQ-LTELPAGLLNGLENLDTL 177
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 37.4 bits (85), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 53/107 (49%), Gaps = 6/107 (5%)
Query: 517 EKVKRLLLMKNHIKHL--PDIPTCPHLLTLFLSHNQLRWISEDFFQFMPSLKVLNLSFTK 574
+K L + +N+I L DI + L L +SHN+++++ F+F L+ L+LS K
Sbjct: 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80
Query: 575 RHKFPSGISKLASLQLIDLSYTSIRGLP--EELKALINLKCLNLDQT 619
K +L+ +DLS+ + LP +E + LK L L T
Sbjct: 81 LVKI--SCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTT 125
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 37.4 bits (85), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 68/160 (42%), Gaps = 7/160 (4%)
Query: 503 AGTGLAVAPGVEGWEKVKRLLLMKNHIKHLP--DIPTCPHLLTLFLSHNQLRWISEDFFQ 560
+G+ ++ G+ E VK L L N I ++ D+ C +L L L+ N + I ED F
Sbjct: 40 SGSLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFS 97
Query: 561 FMPSLKVLNLSFTKRHKFPSGISK-LASLQLIDLSYTSIRGLPEE--LKALINLKCLNLD 617
+ SL+ L+LS+ S K L+SL ++L + L E L L+ L +
Sbjct: 98 SLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVG 157
Query: 618 QTKFLVTIPRHLISSFSMLHVLRMFGSGSSVFHEASGDSI 657
I R + + L L + S + S SI
Sbjct: 158 NMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSI 197
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 36.6 bits (83), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 67/160 (41%), Gaps = 7/160 (4%)
Query: 503 AGTGLAVAPGVEGWEKVKRLLLMKNHIKHLP--DIPTCPHLLTLFLSHNQLRWISEDFFQ 560
+G+ ++ G+ E VK L L N I ++ D+ C +L L L+ N + I ED F
Sbjct: 14 SGSLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFS 71
Query: 561 FMPSLKVLNLSFTKRHKFPSG-ISKLASLQLIDLSYTSIRGLPEE--LKALINLKCLNLD 617
+ SL+ L+LS+ S L+SL ++L + L E L L+ L +
Sbjct: 72 SLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVG 131
Query: 618 QTKFLVTIPRHLISSFSMLHVLRMFGSGSSVFHEASGDSI 657
I R + + L L + S + S SI
Sbjct: 132 NMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSI 171
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 28/49 (57%)
Query: 518 KVKRLLLMKNHIKHLPDIPTCPHLLTLFLSHNQLRWISEDFFQFMPSLK 566
++K L + +N + LPD P LL L +S NQL+ + + F + SL+
Sbjct: 452 QLKELYISRNKLMTLPDASLLPMLLVLKISRNQLKSVPDGIFDRLTSLQ 500
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 36.6 bits (83), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 46/85 (54%), Gaps = 3/85 (3%)
Query: 540 HLLTLFLSHNQLRWISEDFFQFMPSLKVLNLSFTKRH-KFP-SGISKLASLQLIDLSYTS 597
HL TL LSHN+ + F+ P L++L+L+FT+ H P S L LQ+++L+Y
Sbjct: 374 HLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTRLHINAPQSPFQNLHFLQVLNLTYCF 433
Query: 598 IRGLPEELKA-LINLKCLNLDQTKF 621
+ + L A L L+ LNL F
Sbjct: 434 LDTSNQHLLAGLPVLRHLNLKGNHF 458
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 70/173 (40%), Gaps = 41/173 (23%)
Query: 508 AVAPGVEGWEKVKRLLLMKNHIKHL-----PDIPTCPHLL-------------------- 542
+ G++G +K+L+L NH L + P+ HL
Sbjct: 289 GLPSGMKGLNLLKKLVLSVNHFDQLCQISAANFPSLTHLYIRGNVKKLHLGVGCLEKLGN 348
Query: 543 --TLFLSHNQLRWISEDFFQF--MPSLKVLNLSFTKRHKFPSGISKLA-----SLQLIDL 593
TL LSHN + Q + L+ LNLS H P G+ A L+L+DL
Sbjct: 349 LQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLS----HNEPLGLQSQAFKECPQLELLDL 404
Query: 594 SYT--SIRGLPEELKALINLKCLNLDQTKFLVTIPRHLISSFSMLHVLRMFGS 644
++T I + L L+ LNL FL T +HL++ +L L + G+
Sbjct: 405 AFTRLHINAPQSPFQNLHFLQVLNLTYC-FLDTSNQHLLAGLPVLRHLNLKGN 456
>pdb|1WWL|A Chain A, Crystal Structure Of Cd14
pdb|1WWL|B Chain B, Crystal Structure Of Cd14
Length = 312
Score = 36.2 bits (82), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 38/76 (50%), Gaps = 5/76 (6%)
Query: 540 HLLTLFLSHNQLRWISEDFFQFMPS-LKVLNLSFTKRHKFPSGISKLASLQLIDLSYTSI 598
L L LSHN LR + PS L LNLSFT + P G+ A L ++DLSY +
Sbjct: 229 QLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNRL 286
Query: 599 --RGLPEELKALINLK 612
P+EL + NL
Sbjct: 287 DRNPSPDELPQVGNLS 302
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 35.0 bits (79), Expect = 0.17, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 5/85 (5%)
Query: 522 LLLMKNHIKHLPDIPTCPHLLTL---FLSHNQLRWISEDFFQFMPSLKVLNLSFTKRHKF 578
L L N + LP + HL L +L NQL+ + F + LK L L+ +
Sbjct: 88 LGLANNQLASLP-LGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSI 146
Query: 579 PSG-ISKLASLQLIDLSYTSIRGLP 602
P+G KL +LQ + LS ++ +P
Sbjct: 147 PAGAFDKLTNLQTLSLSTNQLQSVP 171
Score = 32.0 bits (71), Expect = 1.7, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
Query: 518 KVKRLLLMKNHIKHLPD--IPTCPHLLTLFLSHNQLRWISEDFFQFMPSLKVLNLSFTKR 575
++ +L L N +K LP L L L+ NQL+ I F + +L+ L+LS +
Sbjct: 108 QLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQL 167
Query: 576 HKFPSG-ISKLASLQLIDL 593
P G +L LQ I L
Sbjct: 168 QSVPHGAFDRLGKLQTITL 186
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 35.0 bits (79), Expect = 0.17, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 5/85 (5%)
Query: 522 LLLMKNHIKHLPDIPTCPHLLTL---FLSHNQLRWISEDFFQFMPSLKVLNLSFTKRHKF 578
L L N + LP + HL L +L NQL+ + F + LK L L+ +
Sbjct: 88 LGLANNQLASLP-LGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSI 146
Query: 579 PSG-ISKLASLQLIDLSYTSIRGLP 602
P+G KL +LQ + LS ++ +P
Sbjct: 147 PAGAFDKLTNLQTLSLSTNQLQSVP 171
Score = 32.0 bits (71), Expect = 1.7, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
Query: 518 KVKRLLLMKNHIKHLPD--IPTCPHLLTLFLSHNQLRWISEDFFQFMPSLKVLNLSFTKR 575
++ +L L N +K LP L L L+ NQL+ I F + +L+ L+LS +
Sbjct: 108 QLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQL 167
Query: 576 HKFPSG-ISKLASLQLIDL 593
P G +L LQ I L
Sbjct: 168 QSVPHGAFDRLGKLQTITL 186
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 56/122 (45%), Gaps = 9/122 (7%)
Query: 518 KVKRLLLMKNHIKHLPDIPTCPHLLTLFLSHNQLRWISEDFFQFMPSLKVLNLSFTKRHK 577
K K L+K+ H D+ L L+ N++ I ++ F + L LNLS
Sbjct: 284 KSKIFALLKSVFSHFTDLEQ------LTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGS 337
Query: 578 FPSGI-SKLASLQLIDLSYTSIRGLPEE-LKALINLKCLNLDQTKFLVTIPRHLISSFSM 635
S + L L+++DLSY IR L ++ L NLK L LD T L ++P + +
Sbjct: 338 IDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALD-TNQLKSVPDGIFDRLTS 396
Query: 636 LH 637
L
Sbjct: 397 LQ 398
Score = 30.0 bits (66), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 546 LSHNQLRWISEDFFQFMPSLKVLNLSFTKRHKFPSGI-SKLASLQLI 591
LS+N +R + + F +P+LK L L + P GI +L SLQ I
Sbjct: 354 LSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKI 400
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 56/111 (50%), Gaps = 5/111 (4%)
Query: 517 EKVKRLLLMKNHIKHLPDIP--TCPHLLTLFLSH-NQLRWISEDFFQFMPSLKVLNLSFT 573
K+K L L N I+ +P P L L L +L +ISE F+ + +L+ LNL+
Sbjct: 136 SKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC 195
Query: 574 KRHKFPSGISKLASLQLIDLSYTSIRGL-PEELKALINLKCLNLDQTKFLV 623
+ P+ ++ L L +DLS + + P + L++L+ L + Q++ V
Sbjct: 196 NLREIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQV 245
>pdb|4ECN|A Chain A, Crystal Structure Of A Leucine-Rich Repeat Protein
(Bt_0210) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.80 A Resolution
Length = 876
Score = 33.9 bits (76), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 41/94 (43%), Gaps = 7/94 (7%)
Query: 511 PGVEGWEKVKRLLLMK---NHIKHLPDIPTCPHLLTLFLSHNQLRWISEDFFQFMPSLKV 567
P +K +L L+ N ++HL T L L L +NQ+ I EDF F ++
Sbjct: 564 PASASLQKXVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEG 623
Query: 568 LNLSFTKRHKFPSGISKLASLQL---IDLSYTSI 598
L S K P+ I S+ + +D SY I
Sbjct: 624 LGFSHNKLKYIPN-IFNAKSVYVXGSVDFSYNKI 656
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 33.9 bits (76), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 29/49 (59%)
Query: 518 KVKRLLLMKNHIKHLPDIPTCPHLLTLFLSHNQLRWISEDFFQFMPSLK 566
+++ L + +N +K LPD P LL + +S NQL+ + + F + SL+
Sbjct: 452 RLQELYISRNKLKTLPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQ 500
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 33.5 bits (75), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 534 DIPTCPHLLTLFLSHNQLRWISEDFFQFMPSLKVLNLSFTK-RHKFPSGISKLASLQLID 592
+I + P+L L L HN + D + L +L+LS K + P +S L L ID
Sbjct: 648 EIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEID 707
Query: 593 LSYTSIRG-LPE 603
LS ++ G +PE
Sbjct: 708 LSNNNLSGPIPE 719
Score = 30.0 bits (66), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Query: 559 FQFMPSLKVLNLSFTK-RHKFPSGISKLASLQLIDLSYTSIRG-LPEELKALINLKCLNL 616
++ +L+ L L F + PSG+S +L I LS + G +P+ + L NL L L
Sbjct: 459 LMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKL 518
Query: 617 DQTKFLVTIPRHL 629
F IP L
Sbjct: 519 SNNSFSGNIPAEL 531
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 33.5 bits (75), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 534 DIPTCPHLLTLFLSHNQLRWISEDFFQFMPSLKVLNLSFTK-RHKFPSGISKLASLQLID 592
+I + P+L L L HN + D + L +L+LS K + P +S L L ID
Sbjct: 651 EIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEID 710
Query: 593 LSYTSIRG-LPE 603
LS ++ G +PE
Sbjct: 711 LSNNNLSGPIPE 722
Score = 30.0 bits (66), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Query: 559 FQFMPSLKVLNLSFTK-RHKFPSGISKLASLQLIDLSYTSIRG-LPEELKALINLKCLNL 616
++ +L+ L L F + PSG+S +L I LS + G +P+ + L NL L L
Sbjct: 462 LMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKL 521
Query: 617 DQTKFLVTIPRHL 629
F IP L
Sbjct: 522 SNNSFSGNIPAEL 534
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 33.5 bits (75), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 6/87 (6%)
Query: 539 PHLLTLFLSHNQLRWISEDFFQFMPSLKVLNLSFTK----RHKFPSGISKLASLQLIDLS 594
PHL+ L L NQL I + F+ ++ L L K +K G+ +L +L L D
Sbjct: 54 PHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQ 113
Query: 595 YTSIRGLPEELKALINLKCLNLDQTKF 621
+ + +P + L +L LNL F
Sbjct: 114 ISCV--MPGSFEHLNSLTSLNLASNPF 138
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 33.1 bits (74), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 46/104 (44%), Gaps = 6/104 (5%)
Query: 506 GLAVAP-GVEGWEKVKRLLLMKNHIKHLPD--IPTCPHLLTLFLSHNQLRWISEDFFQFM 562
GL P G+ RL L N ++ LP L L LS NQ++ + + F +
Sbjct: 18 GLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKL 75
Query: 563 PSLKVLNLSFTKRHKFPSGI-SKLASLQLIDLSYTSIRGLPEEL 605
L +L L K P+G+ KL L+ + L ++ +P+ +
Sbjct: 76 TKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGI 119
Score = 33.1 bits (74), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Query: 518 KVKRLLLMKNHIKHLPD--IPTCPHLLTLFLSHNQLRWISEDFFQFMPSLKVLNLSFTKR 575
++ +L L +N I+ LPD L L+L N+L+ + F + LK L L +
Sbjct: 53 QLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQL 112
Query: 576 HKFPSGI-SKLASLQLI 591
P GI +L SLQ I
Sbjct: 113 KSVPDGIFDRLTSLQKI 129
>pdb|2IFG|A Chain A, Structure Of The Extracellular Segment Of Human Trka In
Complex With Nerve Growth Factor
pdb|2IFG|B Chain B, Structure Of The Extracellular Segment Of Human Trka In
Complex With Nerve Growth Factor
Length = 347
Score = 33.1 bits (74), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 3/90 (3%)
Query: 513 VEGWEKVKRLLL-MKNHIKHLP--DIPTCPHLLTLFLSHNQLRWISEDFFQFMPSLKVLN 569
+ G E + L + + H++HL D+ L L + + LR+++ D F F P L LN
Sbjct: 27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLN 86
Query: 570 LSFTKRHKFPSGISKLASLQLIDLSYTSIR 599
LSF + SLQ + LS +
Sbjct: 87 LSFNALESLSWKTVQGLSLQELVLSGNPLH 116
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 33.1 bits (74), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 540 HLLTLFLSHNQLRWISEDFFQFMPSLKVLNLSFTKRHKFPSGI-SKLASLQLI 591
+L ++ N+LR + F MP LK LNL+ + P GI +L SLQ I
Sbjct: 171 NLESIEFGSNKLRQMPRGIFGKMPKLKQLNLASNQLKSVPDGIFDRLTSLQKI 223
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 32.7 bits (73), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 54/117 (46%), Gaps = 11/117 (9%)
Query: 540 HLLTLFLSHNQLRWISEDFFQFMPSLKVLNL---SFTKRHKFPSGISKLASLQLIDLSYT 596
++ ++LS+N+ +S F +PSL+ L L + PS L +L ++DLS
Sbjct: 431 NIFEIYLSYNKYLQLSTSSFALVPSLQRLMLRRVALKNVDISPSPFRPLRNLTILDLSNN 490
Query: 597 SIRGLPEE-LKALINLKCLNLDQTKFL-------VTIPRHLISSFSMLHVLRMFGSG 645
+I + E+ L+ L NL+ L+ P + + S LH+L + +G
Sbjct: 491 NIANINEDLLEGLENLEILDFQHNNLARLWKRANPGGPVNFLKGLSHLHILNLESNG 547
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 32.7 bits (73), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 29/49 (59%)
Query: 518 KVKRLLLMKNHIKHLPDIPTCPHLLTLFLSHNQLRWISEDFFQFMPSLK 566
+++ L + +N +K LPD P LL + ++ NQL+ + + F + SL+
Sbjct: 478 RLQELYISRNKLKTLPDASLFPVLLVMKIASNQLKSVPDGIFDRLTSLQ 526
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 32.3 bits (72), Expect = 1.1, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 7/86 (8%)
Query: 535 IPTCPHLLTLFLSHNQLRWISEDFFQFMPSLKVLNLSFTKRHKFPSGI-SKLASLQLIDL 593
IPT +L L++ NQ+ + F + L LNL+ + P G+ KL L + L
Sbjct: 38 IPTTTQVLHLYI--NQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLAL 95
Query: 594 SYTSIRGLP----EELKALINLKCLN 615
++ +P + LK+L ++ N
Sbjct: 96 HINQLKSIPMGVFDNLKSLTHIYLFN 121
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 544 LFLSHNQLRWISEDFFQFMPSLKVLNLSFTKRHKFPSGISKLASLQLIDLSYTSIRGLPE 603
L LS+ Q+ IS + F++ L L L+ + P+ I L++L+++DLS+ + LP
Sbjct: 229 LDLSNLQIFNISANIFKY-DFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPA 287
Query: 604 ELKALINLK 612
EL + LK
Sbjct: 288 ELGSCFQLK 296
Score = 30.4 bits (67), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 567 VLNLSFTKRHKFPSGISKLASLQLIDLSYTSIRGLPEELKALINLKCLNLDQTKFLVTIP 626
L+LS + + I K L + L+ S+ LP E+K L NL+ L+L + L ++P
Sbjct: 228 ALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNR-LTSLP 286
Query: 627 RHLISSFSM 635
L S F +
Sbjct: 287 AELGSCFQL 295
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 56/122 (45%), Gaps = 9/122 (7%)
Query: 497 ENILVYAGTGLAVAP-GVEGWEKVKRLLLMKNHIKHLP-DIPTCPHLLTLFLSHNQLRWI 554
+ ++ + GL V P G+ V L L N +P ++ HL + LS+N++ +
Sbjct: 12 DTVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTL 69
Query: 555 SEDFFQFMPSLKVLNLSFTK-RHKFPSGISKLASLQLIDLSYTSIRGLPE----ELKALI 609
S F M L L LS+ + R P L SL+L+ L I +PE +L AL
Sbjct: 70 SNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALS 129
Query: 610 NL 611
+L
Sbjct: 130 HL 131
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 532 LPDIPTCPHLLTLF-LSHNQLRWISEDFFQFMPSLKVLNLSFTKRHKFPSGI-SKLASLQ 589
LPDI T LT LS QL +S F + SL+VLN++ + P GI +L SLQ
Sbjct: 462 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQ 521
Query: 590 LI 591
I
Sbjct: 522 KI 523
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 40/96 (41%), Gaps = 3/96 (3%)
Query: 511 PGV-EGWEKVKRLLLMKNHIKHLPD--IPTCPHLLTLFLSHNQLRWISEDFFQFMPSLKV 567
PGV + +K L L N + LP + L L L NQL + F + LK
Sbjct: 57 PGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKE 116
Query: 568 LNLSFTKRHKFPSGISKLASLQLIDLSYTSIRGLPE 603
L + K + P GI +L L + L ++ +P
Sbjct: 117 LFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPH 152
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 24/37 (64%)
Query: 540 HLLTLFLSHNQLRWISEDFFQFMPSLKVLNLSFTKRH 576
+L +L LSHN L +IS + F +P+L+ L+LS H
Sbjct: 65 NLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLH 101
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 56/108 (51%), Gaps = 10/108 (9%)
Query: 540 HLLTLFLSHNQLRWISEDFFQFMPSLKVLNLSFTKRH-KFP-SGISKLASLQLIDLSYTS 597
HL L LS+N+ + + F+ P L++L+++FT H K P S L L++++LS+
Sbjct: 376 HLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVLNLSHCL 435
Query: 598 IRGLPEELKA-LINLKCLNLDQTKFLVTIPRHLISSFSMLHVLRMFGS 644
+ + L A L +L+ LNL F S S ++L+M GS
Sbjct: 436 LDTSNQHLLAGLQDLRHLNLQGNSFQD-------GSISKTNLLQMVGS 476
Score = 30.4 bits (67), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 63/143 (44%), Gaps = 10/143 (6%)
Query: 508 AVAPGVEGWEKVKRLLLMKNHIKHLPDI--PTCPHLLTLFLSHNQLRW-ISEDFFQFMPS 564
+ G+EG +K+L+L N L I + P L L++ N + + + + +
Sbjct: 291 GLPSGIEGMNSLKKLVLNANSFDQLCQINAASFPSLRDLYIKGNMRKLDLGTRCLEKLEN 350
Query: 565 LKVLNLSFTKRHKFPS---GISKLASLQLIDLSYTSIRGLPEE-LKALINLKCLNLDQTK 620
L+ L+LS + + L LQ ++LSY GL ++ K L+ L++ T
Sbjct: 351 LQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTH 410
Query: 621 FLVTIPRHLISSFSMLHVLRMFG 643
V P S F LH+LR+
Sbjct: 411 LHVKAPH---SPFQNLHLLRVLN 430
>pdb|2C1L|A Chain A, Structure Of The Bfii Restriction Endonuclease
pdb|2C1L|B Chain B, Structure Of The Bfii Restriction Endonuclease
Length = 358
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Query: 550 QLRWISEDFFQFMPSLKVLNLSFTKRHKFPSGISKLASLQLIDLSYT 596
Q W+S+D + F P L + N TK + S L ++ ID++YT
Sbjct: 226 QYFWLSKDSYDFFPPLTIRNRRGTK-----ATYSSLINMNYIDINYT 267
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 55/110 (50%), Gaps = 13/110 (11%)
Query: 509 VAPGV-EGWEKVKRLLLMKNHIKHLPD-IPTCPHLLTLFLSHNQLRWISEDFFQFMPSLK 566
++PG K++RL L KN +K LP+ +P L L + N++ + + F + +
Sbjct: 91 ISPGAFAPLVKLERLYLSKNQLKELPEKMPKT--LQELRVHENEITKVRKSVFNGLNQMI 148
Query: 567 VLNL-------SFTKRHKFPSGISKLASLQLIDLSYTSI-RGLPEELKAL 608
V+ L S + F G+ KL+ +++ D + T+I +GLP L L
Sbjct: 149 VVELGTNPLKSSGIENGAF-QGMKKLSYIRIADTNITTIPQGLPPSLTEL 197
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 55/110 (50%), Gaps = 13/110 (11%)
Query: 509 VAPGV-EGWEKVKRLLLMKNHIKHLPD-IPTCPHLLTLFLSHNQLRWISEDFFQFMPSLK 566
++PG K++RL L KN +K LP+ +P L L + N++ + + F + +
Sbjct: 91 ISPGAFAPLVKLERLYLSKNQLKELPEKMPKT--LQELRVHENEITKVRKSVFNGLNQMI 148
Query: 567 VLNL-------SFTKRHKFPSGISKLASLQLIDLSYTSI-RGLPEELKAL 608
V+ L S + F G+ KL+ +++ D + T+I +GLP L L
Sbjct: 149 VVELGTNPLKSSGIENGAF-QGMKKLSYIRIADTNITTIPQGLPPSLTEL 197
>pdb|1Z6T|A Chain A, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|B Chain B, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|C Chain C, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|D Chain D, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
Length = 591
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 60/140 (42%), Gaps = 17/140 (12%)
Query: 250 LEIFKILREKKFVLLLDDIWERVNLNKVGVPLPSPQSTTASKVVFTTRFINVCGS-MEAH 308
L I + + + +L+LDD+W+ L + +++ TTR +V S M
Sbjct: 227 LRILMLRKHPRSLLILDDVWDSWVLKAFD---------SQCQILLTTRDKSVTDSVMGPK 277
Query: 309 RNFKVEC-LTEKHAWELFQMKVGEETLKSHPHVFELAQVVAKECGGLPLALITIGRAMAY 367
VE L ++ E+ + V + + E A + KEC G PL + IG +
Sbjct: 278 YVVPVESSLGKEKGLEILSLFVNMKK----ADLPEQAHSIIKECKGSPLVVSLIGALLRD 333
Query: 368 KKTREEWKYAIEVLRRSTFE 387
R W+Y ++ L+ F+
Sbjct: 334 FPNR--WEYYLKQLQNKQFK 351
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 54/113 (47%), Gaps = 4/113 (3%)
Query: 504 GTGLAVAPGVEGWEKVKRLLLMKNHIKHLPDIPTCPHLLTLFLSHNQLRWISEDFFQFMP 563
GTG+ GV+ + L L N I L + + L LS N L+ +S +
Sbjct: 50 GTGVTTIEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSA--IAGLQ 107
Query: 564 SLKVLNLSFTKRHKFPSGISKLASLQLIDLSYTSIRGLPEELKALINLKCLNL 616
S+K L+L+ T+ + ++ L++LQ++ L I + L L NL+ L++
Sbjct: 108 SIKTLDLTSTQITDV-TPLAGLSNLQVLYLDLNQITNI-SPLAGLTNLQYLSI 158
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 30.8 bits (68), Expect = 3.4, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Query: 544 LFLSHNQLRWISEDFFQFMPSLKVLNLSFTKRHKFPSGI-SKLASLQLIDLSYTSIRGLP 602
L+L++NQ+ + F + +L+ L + K P+G+ KL L +DL+ ++ +P
Sbjct: 38 LWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIP 97
Query: 603 EELKALINLKCL 614
A NLK L
Sbjct: 98 R--GAFDNLKSL 107
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 60/140 (42%), Gaps = 17/140 (12%)
Query: 250 LEIFKILREKKFVLLLDDIWERVNLNKVGVPLPSPQSTTASKVVFTTRFINVCGS-MEAH 308
L I + + + +L+LDD+W+ L + +++ TTR +V S M
Sbjct: 233 LRILMLRKHPRSLLILDDVWDSWVLKAFD---------SQCQILLTTRDKSVTDSVMGPK 283
Query: 309 RNFKVEC-LTEKHAWELFQMKVGEETLKSHPHVFELAQVVAKECGGLPLALITIGRAMAY 367
VE L ++ E+ + V + + E A + KEC G PL + IG +
Sbjct: 284 YVVPVESSLGKEKGLEILSLFVNMKK----ADLPEQAHSIIKECKGSPLVVSLIGALLRD 339
Query: 368 KKTREEWKYAIEVLRRSTFE 387
R W+Y ++ L+ F+
Sbjct: 340 FPNR--WEYYLKQLQNKQFK 357
>pdb|3DNP|A Chain A, Crystal Structure Of Stress Response Protein Yhax From
Bacillus Subtilis
Length = 290
Score = 30.4 bits (67), Expect = 4.9, Method: Composition-based stats.
Identities = 16/60 (26%), Positives = 31/60 (51%)
Query: 532 LPDIPTCPHLLTLFLSHNQLRWISEDFFQFMPSLKVLNLSFTKRHKFPSGISKLASLQLI 591
L D P ++ ++ H+ I+E + P++ V+ ++ K + P G+SK A L L+
Sbjct: 151 LXDEPVSAPVIEVYTEHDIQHDITETITKAFPAVDVIRVNDEKLNIVPKGVSKEAGLALV 210
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 30.0 bits (66), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 59/142 (41%), Gaps = 21/142 (14%)
Query: 250 LEIFKILREKKFVLLLDDIWERVNLNKVGVPLPSPQSTTASKVVFTTRFINVCGSMEAHR 309
L + + + + +L+LDD+W+ P +++ TTR +V S+ +
Sbjct: 227 LRVLMLRKHPRSLLILDDVWD---------PWVLKAFDNQCQILLTTRDKSVTDSVMGPK 277
Query: 310 N-FKVEC-LTEKHAWELFQMKVG--EETLKSHPHVFELAQVVAKECGGLPLALITIGRAM 365
+ VE L + E+ + V +E L + H + KEC G PL + IG +
Sbjct: 278 HVVPVESGLGREKGLEILSLFVNMKKEDLPAEAH------SIIKECKGSPLVVSLIGALL 331
Query: 366 AYKKTREEWKYAIEVLRRSTFE 387
R W Y + L+ F+
Sbjct: 332 RDFPNR--WAYYLRQLQNKQFK 351
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 30.0 bits (66), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 9/67 (13%)
Query: 546 LSHNQLRWISEDFFQFMPSLKVLNLSFTKRHKFPS-GISKLASLQLIDLSY--------T 596
LSH + ++ F+ + LKVLNL++ K +K L +LQ+++LSY +
Sbjct: 273 LSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSS 332
Query: 597 SIRGLPE 603
+ GLP+
Sbjct: 333 NFYGLPK 339
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 29.6 bits (65), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 30/142 (21%), Positives = 56/142 (39%), Gaps = 21/142 (14%)
Query: 250 LEIFKILREKKFVLLLDDIWERVNL----NKVGVPLPSPQSTTASKVVFTTRFINVCGSM 305
L + + + + +L+LDD+W+ L N+ + L + + V+ + V +
Sbjct: 234 LRVLMLRKHPRSLLILDDVWDPWVLKAFDNQCQILLTTSDKSVTDSVMGPKHVVPVESGL 293
Query: 306 EAHRNFKVECLTEKHAWELFQMKVGEETLKSHPHVFELAQVVAKECGGLPLALITIGRAM 365
+ ++ L MK +E L + H + KEC G PL + IG +
Sbjct: 294 GREKGLEILSL-------FVNMK--KEDLPAEAH------SIIKECKGSPLVVSLIGALL 338
Query: 366 AYKKTREEWKYAIEVLRRSTFE 387
R W Y + L+ F+
Sbjct: 339 RDFPNR--WAYYLRQLQNKQFK 358
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 29.6 bits (65), Expect = 7.7, Method: Composition-based stats.
Identities = 34/136 (25%), Positives = 62/136 (45%), Gaps = 7/136 (5%)
Query: 505 TGLAVAPGVEGWEKVKRLLLMKNHIKHLPDIPTCPHLLTLFLSHNQLRWISEDFFQFMPS 564
TG+ G++ + L L N I L + + L LS N L+ +S + S
Sbjct: 57 TGVTTIEGIQYLNNLIGLELKDNQITDLTPLKNLTKITELELSGNPLKNVSA--IAGLQS 114
Query: 565 LKVLNLSFTKRHKFPSGISKLASLQLIDLSYTSIRGLPEELKALINLKCLNLDQTKFLVT 624
+K L+L+ T+ + ++ L++LQ++ L I + L L NL+ L++ +
Sbjct: 115 IKTLDLTSTQITDV-TPLAGLSNLQVLYLDLNQITNI-SPLAGLTNLQYLSIGNNQVNDL 172
Query: 625 IPRHLISSFSMLHVLR 640
P +++ S L LR
Sbjct: 173 TP---LANLSKLTTLR 185
>pdb|3SON|A Chain A, Crystal Structure Of A Hypothetical Nudix Hydrolase
(Lmof2365_2679) From Listeria Monocytogenes (Atcc 19115)
At 1.70 A Resolution
pdb|3SON|B Chain B, Crystal Structure Of A Hypothetical Nudix Hydrolase
(Lmof2365_2679) From Listeria Monocytogenes (Atcc 19115)
At 1.70 A Resolution
Length = 149
Score = 29.6 bits (65), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 17/22 (77%)
Query: 534 DIPTCPHLLTLFLSHNQLRWIS 555
D+ +C + +TL L H++LRW+S
Sbjct: 96 DLTSCSYQVTLSLEHSELRWVS 117
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 29.3 bits (64), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 46/85 (54%), Gaps = 3/85 (3%)
Query: 540 HLLTLFLSHNQLRWISEDFFQFMPSLKVLNLSFT--KRHKFPSGISKLASLQLIDLSYTS 597
HL +L LS+N+ + + F+ P L++L+L+FT K S L L++++LS++
Sbjct: 377 HLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSL 436
Query: 598 IRGLPEEL-KALINLKCLNLDQTKF 621
+ E+L L L+ LNL F
Sbjct: 437 LDISSEQLFDGLPALQHLNLQGNHF 461
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 29.3 bits (64), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 53/114 (46%), Gaps = 11/114 (9%)
Query: 507 LAVAP--GVEGWEKVKRLLLMKNHIKHLPDIP--TCPHLLTLFLSH-NQLRWISEDFFQF 561
L V P E K++ L L N I+ +P P L+ L L +L +ISE F+
Sbjct: 135 LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEG 194
Query: 562 MPSLKVLNLSFTKRHKFPSGISKLASLQLIDLS---YTSIRGLPEELKALINLK 612
+ +LK LNL P+ ++ L L+ +++S + IR P L +LK
Sbjct: 195 LFNLKYLNLGMCNIKDMPN-LTPLVGLEELEMSGNHFPEIR--PGSFHGLSSLK 245
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,414,272
Number of Sequences: 62578
Number of extensions: 949647
Number of successful extensions: 2496
Number of sequences better than 100.0: 71
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 57
Number of HSP's that attempted gapping in prelim test: 2375
Number of HSP's gapped (non-prelim): 165
length of query: 911
length of database: 14,973,337
effective HSP length: 108
effective length of query: 803
effective length of database: 8,214,913
effective search space: 6596575139
effective search space used: 6596575139
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)