Query 002538
Match_columns 911
No_of_seqs 529 out of 4402
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 02:01:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002538.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002538hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 1E-101 3E-106 908.1 48.4 843 14-892 8-883 (889)
2 PLN03210 Resistant to P. syrin 100.0 4.1E-65 8.9E-70 635.3 53.1 623 157-860 185-912 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 3.1E-45 6.8E-50 392.8 16.2 280 161-444 1-284 (287)
4 PLN00113 leucine-rich repeat r 99.9 1.4E-21 2.9E-26 245.5 18.5 328 515-873 116-459 (968)
5 PLN00113 leucine-rich repeat r 99.9 3E-21 6.5E-26 242.4 17.8 318 511-873 87-435 (968)
6 KOG0444 Cytoskeletal regulator 99.9 9E-24 1.9E-28 224.5 -6.6 325 498-857 35-378 (1255)
7 KOG4194 Membrane glycoprotein 99.8 5.9E-22 1.3E-26 209.9 4.3 351 516-894 101-470 (873)
8 KOG4194 Membrane glycoprotein 99.8 3.2E-22 6.9E-27 211.9 1.4 315 507-849 114-447 (873)
9 PLN03210 Resistant to P. syrin 99.8 7.6E-20 1.7E-24 229.4 20.3 362 480-872 489-899 (1153)
10 KOG0444 Cytoskeletal regulator 99.8 4.6E-22 1E-26 211.6 -2.9 294 508-846 94-391 (1255)
11 KOG0472 Leucine-rich repeat pr 99.7 5.2E-20 1.1E-24 187.2 -4.1 326 508-852 197-539 (565)
12 PRK15387 E3 ubiquitin-protein 99.6 2.6E-14 5.7E-19 166.4 16.6 114 517-647 222-335 (788)
13 KOG0472 Leucine-rich repeat pr 99.5 3.8E-17 8.3E-22 166.5 -8.9 245 515-833 66-312 (565)
14 KOG0617 Ras suppressor protein 99.5 3.5E-16 7.7E-21 141.2 -4.2 162 509-689 25-189 (264)
15 KOG0618 Serine/threonine phosp 99.5 1.2E-15 2.5E-20 171.5 -1.8 286 518-850 220-506 (1081)
16 KOG0618 Serine/threonine phosp 99.5 2.4E-15 5.1E-20 169.1 -2.3 245 563-853 241-488 (1081)
17 KOG4658 Apoptotic ATPase [Sign 99.5 4.3E-14 9.3E-19 168.4 7.5 316 506-861 534-867 (889)
18 PRK15370 E3 ubiquitin-protein 99.4 2.6E-13 5.7E-18 159.3 11.8 116 519-646 180-295 (754)
19 PRK15387 E3 ubiquitin-protein 99.4 7.7E-13 1.7E-17 154.3 14.7 255 518-852 202-456 (788)
20 PRK15370 E3 ubiquitin-protein 99.4 2.9E-13 6.2E-18 159.0 11.2 244 500-828 183-426 (754)
21 KOG0617 Ras suppressor protein 99.4 5.1E-15 1.1E-19 133.8 -4.1 160 529-734 23-183 (264)
22 KOG4237 Extracellular matrix p 99.3 1E-13 2.3E-18 141.7 -3.9 296 500-827 51-356 (498)
23 KOG4237 Extracellular matrix p 99.3 1.3E-13 2.8E-18 141.1 -3.4 285 525-852 54-357 (498)
24 PRK04841 transcriptional regul 99.2 5.8E-10 1.2E-14 139.9 23.6 288 158-489 16-332 (903)
25 PRK00411 cdc6 cell division co 99.2 1.5E-09 3.3E-14 121.8 22.7 294 156-470 30-358 (394)
26 TIGR03015 pepcterm_ATPase puta 99.1 6.3E-09 1.4E-13 110.3 22.9 184 174-365 40-242 (269)
27 cd00116 LRR_RI Leucine-rich re 99.1 1.1E-11 2.5E-16 135.2 0.7 84 537-620 21-119 (319)
28 TIGR02928 orc1/cdc6 family rep 99.1 4E-08 8.7E-13 109.2 27.4 296 156-470 15-350 (365)
29 PF01637 Arch_ATPase: Archaeal 99.1 5.9E-10 1.3E-14 115.6 11.8 195 158-360 1-233 (234)
30 cd00116 LRR_RI Leucine-rich re 99.1 7.2E-11 1.6E-15 128.9 3.5 265 558-850 18-316 (319)
31 PF14580 LRR_9: Leucine-rich r 99.0 2.3E-10 5.1E-15 109.5 6.2 125 515-642 17-148 (175)
32 TIGR00635 ruvB Holliday juncti 99.0 1.1E-08 2.4E-13 110.4 18.5 272 157-470 5-289 (305)
33 PRK00080 ruvB Holliday junctio 98.9 1.5E-08 3.2E-13 110.1 15.9 273 156-470 25-310 (328)
34 KOG4341 F-box protein containi 98.9 4.3E-11 9.3E-16 124.0 -3.8 81 540-620 139-227 (483)
35 KOG0532 Leucine-rich repeat (L 98.9 5.2E-11 1.1E-15 127.7 -4.6 168 518-709 76-244 (722)
36 PF05729 NACHT: NACHT domain 98.9 8.6E-09 1.9E-13 100.5 11.0 143 178-329 1-163 (166)
37 PF14580 LRR_9: Leucine-rich r 98.9 3.2E-09 6.9E-14 101.8 6.6 119 500-618 24-149 (175)
38 COG2909 MalT ATP-dependent tra 98.8 2.7E-07 5.9E-12 105.1 21.0 297 147-490 11-339 (894)
39 KOG3207 Beta-tubulin folding c 98.8 1.2E-09 2.6E-14 114.1 1.3 211 536-791 118-336 (505)
40 COG2256 MGS1 ATPase related to 98.8 3.7E-08 8E-13 102.8 11.8 168 155-356 29-207 (436)
41 KOG0532 Leucine-rich repeat (L 98.7 7.1E-10 1.5E-14 119.2 -2.9 170 519-709 100-270 (722)
42 PRK06893 DNA replication initi 98.7 5.4E-08 1.2E-12 99.5 9.9 150 176-359 38-201 (229)
43 KOG1259 Nischarin, modulator o 98.7 2.1E-09 4.5E-14 106.4 -0.8 131 513-647 280-412 (490)
44 KOG4341 F-box protein containi 98.7 4.8E-10 1E-14 116.3 -5.8 285 518-859 139-444 (483)
45 KOG3207 Beta-tubulin folding c 98.7 4.8E-09 1E-13 109.7 1.4 159 515-688 119-286 (505)
46 TIGR03420 DnaA_homol_Hda DnaA 98.6 3.5E-07 7.6E-12 94.1 11.5 168 161-362 22-202 (226)
47 PTZ00112 origin recognition co 98.5 6.9E-06 1.5E-10 94.6 21.4 204 156-365 755-986 (1164)
48 PRK13342 recombination factor 98.5 7.7E-07 1.7E-11 99.8 13.4 172 158-361 14-196 (413)
49 KOG2028 ATPase related to the 98.5 3.3E-06 7.1E-11 86.5 15.1 162 168-355 153-330 (554)
50 COG4886 Leucine-rich repeat (L 98.5 1.1E-07 2.4E-12 107.0 5.1 196 521-775 97-294 (394)
51 PF13855 LRR_8: Leucine rich r 98.5 1.4E-07 3E-12 74.2 4.0 59 539-597 1-60 (61)
52 PRK07003 DNA polymerase III su 98.5 4.2E-06 9.1E-11 95.9 17.2 181 156-365 16-225 (830)
53 COG3899 Predicted ATPase [Gene 98.5 2.6E-06 5.7E-11 102.9 16.3 307 158-487 2-384 (849)
54 PF13173 AAA_14: AAA domain 98.4 3.8E-07 8.3E-12 84.1 7.0 119 177-320 2-126 (128)
55 KOG2120 SCF ubiquitin ligase, 98.4 5.4E-09 1.2E-13 103.7 -5.7 184 587-828 186-374 (419)
56 KOG1259 Nischarin, modulator o 98.4 3.3E-08 7.2E-13 98.1 -0.6 134 536-688 281-414 (490)
57 cd01128 rho_factor Transcripti 98.4 3.5E-07 7.6E-12 93.6 6.6 93 175-271 14-115 (249)
58 PRK04195 replication factor C 98.4 7.2E-06 1.6E-10 93.9 18.0 172 157-359 15-200 (482)
59 PRK05564 DNA polymerase III su 98.4 6.7E-06 1.5E-10 88.8 16.7 177 157-361 5-190 (313)
60 PRK12323 DNA polymerase III su 98.4 9E-06 2E-10 92.1 17.8 196 156-363 16-228 (700)
61 COG4886 Leucine-rich repeat (L 98.4 2.5E-07 5.5E-12 104.0 5.8 157 513-688 112-270 (394)
62 TIGR02903 spore_lon_C ATP-depe 98.4 3.6E-05 7.8E-10 90.0 23.5 201 157-364 155-398 (615)
63 PLN03150 hypothetical protein; 98.4 7.8E-07 1.7E-11 104.8 9.5 107 540-646 419-527 (623)
64 cd00009 AAA The AAA+ (ATPases 98.4 1.9E-06 4E-11 81.9 10.5 122 160-300 2-131 (151)
65 PRK08727 hypothetical protein; 98.4 2.1E-06 4.5E-11 88.1 11.4 169 156-358 20-201 (233)
66 COG1474 CDC6 Cdc6-related prot 98.3 4.6E-05 9.9E-10 82.9 20.7 196 158-362 19-239 (366)
67 KOG2120 SCF ubiquitin ligase, 98.3 3.2E-08 6.9E-13 98.3 -3.7 182 563-792 185-374 (419)
68 KOG1909 Ran GTPase-activating 98.3 2.9E-07 6.2E-12 94.1 2.4 94 719-827 208-308 (382)
69 KOG1909 Ran GTPase-activating 98.3 1.3E-07 2.7E-12 96.7 -0.4 199 607-852 90-309 (382)
70 PF13401 AAA_22: AAA domain; P 98.3 1.8E-06 3.9E-11 80.2 7.0 117 176-298 3-125 (131)
71 PRK12402 replication factor C 98.3 1.2E-05 2.5E-10 88.5 14.5 192 156-358 15-223 (337)
72 PRK14949 DNA polymerase III su 98.3 1.1E-05 2.5E-10 94.4 14.4 182 156-363 16-223 (944)
73 PRK14963 DNA polymerase III su 98.2 2E-05 4.2E-10 89.6 15.9 197 157-365 15-222 (504)
74 PRK08084 DNA replication initi 98.2 6.5E-06 1.4E-10 84.6 10.8 170 155-358 22-206 (235)
75 PF13855 LRR_8: Leucine rich r 98.2 1E-06 2.2E-11 69.2 3.7 57 564-620 2-60 (61)
76 PLN03025 replication factor C 98.2 1.1E-05 2.4E-10 87.2 13.1 177 157-356 14-195 (319)
77 PRK14961 DNA polymerase III su 98.2 2.5E-05 5.4E-10 85.9 15.9 192 156-361 16-221 (363)
78 PRK09087 hypothetical protein; 98.2 1.1E-05 2.3E-10 82.1 11.4 163 155-360 21-194 (226)
79 PRK14960 DNA polymerase III su 98.2 2E-05 4.4E-10 89.5 14.5 195 156-363 15-222 (702)
80 PRK00440 rfc replication facto 98.2 2.6E-05 5.6E-10 85.0 14.9 180 158-361 19-204 (319)
81 PRK09376 rho transcription ter 98.2 4.5E-06 9.7E-11 88.9 8.4 100 167-270 158-267 (416)
82 PRK13341 recombination factor 98.2 1.1E-05 2.4E-10 95.1 12.2 167 158-356 30-212 (725)
83 PLN03150 hypothetical protein; 98.2 4.9E-06 1.1E-10 98.1 9.3 109 518-626 419-532 (623)
84 PRK14962 DNA polymerase III su 98.2 3.8E-05 8.3E-10 86.5 15.7 185 157-365 15-223 (472)
85 KOG1859 Leucine-rich repeat pr 98.1 1.2E-07 2.6E-12 105.0 -4.3 140 503-647 95-267 (1096)
86 PRK07940 DNA polymerase III su 98.1 6E-05 1.3E-09 82.8 16.0 171 157-361 6-213 (394)
87 PRK14956 DNA polymerase III su 98.1 5.4E-05 1.2E-09 83.8 15.5 197 157-363 19-225 (484)
88 PRK06645 DNA polymerase III su 98.1 5.9E-05 1.3E-09 85.2 16.2 196 157-362 22-231 (507)
89 KOG0531 Protein phosphatase 1, 98.1 2.9E-07 6.3E-12 103.6 -2.3 125 518-647 73-199 (414)
90 TIGR00678 holB DNA polymerase 98.1 7.4E-05 1.6E-09 74.2 15.1 161 167-357 3-187 (188)
91 TIGR01242 26Sp45 26S proteasom 98.1 2.6E-05 5.6E-10 86.2 13.0 172 156-355 122-328 (364)
92 KOG2982 Uncharacterized conser 98.1 1.2E-06 2.6E-11 87.4 1.9 82 696-787 196-285 (418)
93 PRK05642 DNA replication initi 98.1 2.1E-05 4.6E-10 80.6 11.1 170 155-358 19-205 (234)
94 PF13191 AAA_16: AAA ATPase do 98.1 6.7E-06 1.5E-10 81.6 7.1 44 158-201 2-48 (185)
95 COG3903 Predicted ATPase [Gene 98.1 9.6E-06 2.1E-10 85.8 8.1 288 176-490 13-315 (414)
96 PRK08691 DNA polymerase III su 98.1 3.7E-05 8E-10 88.4 13.1 199 156-365 16-225 (709)
97 TIGR02397 dnaX_nterm DNA polym 98.0 0.00011 2.5E-09 81.2 16.6 179 157-360 15-217 (355)
98 PRK14957 DNA polymerase III su 98.0 7.4E-05 1.6E-09 85.0 15.1 184 157-365 17-225 (546)
99 PRK07471 DNA polymerase III su 98.0 0.00014 3E-09 79.3 16.5 197 156-362 19-239 (365)
100 PRK08903 DnaA regulatory inact 98.0 2.7E-05 5.8E-10 80.0 10.5 171 157-365 20-203 (227)
101 TIGR00767 rho transcription te 98.0 2.3E-05 5E-10 84.1 9.5 95 175-271 166-267 (415)
102 PF00308 Bac_DnaA: Bacterial d 98.0 4.7E-05 1E-09 77.1 11.1 177 156-355 9-202 (219)
103 PF05496 RuvB_N: Holliday junc 98.0 8.2E-05 1.8E-09 73.1 12.1 168 157-359 25-219 (233)
104 PRK14964 DNA polymerase III su 98.0 0.00013 2.8E-09 81.8 15.3 177 156-356 13-212 (491)
105 PRK07994 DNA polymerase III su 98.0 7.7E-05 1.7E-09 86.2 13.6 193 156-361 16-221 (647)
106 PRK09112 DNA polymerase III su 98.0 0.00012 2.5E-09 79.5 14.2 197 156-362 23-241 (351)
107 PRK14951 DNA polymerase III su 98.0 0.00013 2.9E-09 84.2 15.4 192 157-358 17-222 (618)
108 PTZ00202 tuzin; Provisional 97.9 8E-05 1.7E-09 79.8 12.0 158 156-329 262-434 (550)
109 PRK14958 DNA polymerase III su 97.9 0.00012 2.6E-09 83.4 14.3 185 156-365 16-225 (509)
110 KOG0531 Protein phosphatase 1, 97.9 1.9E-06 4.1E-11 97.0 -0.7 129 513-647 91-221 (414)
111 PRK14955 DNA polymerase III su 97.9 0.00011 2.5E-09 81.8 13.4 199 157-362 17-230 (397)
112 PRK05896 DNA polymerase III su 97.9 0.00016 3.6E-09 82.3 14.7 196 156-364 16-224 (605)
113 PRK14970 DNA polymerase III su 97.9 0.00021 4.5E-09 79.3 15.2 184 157-364 18-213 (367)
114 PF12799 LRR_4: Leucine Rich r 97.9 1.3E-05 2.8E-10 57.5 3.6 38 564-601 2-39 (44)
115 PF05621 TniB: Bacterial TniB 97.9 0.00046 9.9E-09 71.3 16.0 184 165-357 46-257 (302)
116 KOG1859 Leucine-rich repeat pr 97.9 4.7E-07 1E-11 100.5 -6.2 128 514-647 161-292 (1096)
117 KOG4579 Leucine-rich repeat (L 97.9 2.2E-06 4.7E-11 75.7 -0.9 109 519-628 29-141 (177)
118 PRK14969 DNA polymerase III su 97.9 0.00017 3.6E-09 82.9 14.2 180 156-365 16-225 (527)
119 PRK14959 DNA polymerase III su 97.9 0.0002 4.2E-09 82.1 14.4 195 157-365 17-225 (624)
120 PRK09111 DNA polymerase III su 97.9 0.00019 4.1E-09 83.1 14.5 191 157-358 25-230 (598)
121 PRK03992 proteasome-activating 97.9 0.00021 4.4E-09 79.3 14.3 170 157-354 132-336 (389)
122 PRK14087 dnaA chromosomal repl 97.8 0.00013 2.8E-09 82.2 12.0 167 177-362 141-320 (450)
123 TIGR03345 VI_ClpV1 type VI sec 97.8 0.00021 4.5E-09 86.8 14.3 178 157-354 188-389 (852)
124 KOG1644 U2-associated snRNP A' 97.8 3E-05 6.5E-10 73.6 5.5 101 518-618 43-149 (233)
125 PRK07764 DNA polymerase III su 97.8 0.0003 6.5E-09 84.3 15.3 180 156-365 15-226 (824)
126 PRK14952 DNA polymerase III su 97.8 0.00041 8.9E-09 79.9 15.7 198 156-366 13-225 (584)
127 KOG0989 Replication factor C, 97.8 0.00012 2.7E-09 74.1 9.8 187 157-363 37-233 (346)
128 PRK11331 5-methylcytosine-spec 97.8 0.00016 3.4E-09 79.2 11.3 106 158-271 177-284 (459)
129 PF12799 LRR_4: Leucine Rich r 97.8 3.2E-05 7E-10 55.4 4.1 41 586-627 1-41 (44)
130 PRK14954 DNA polymerase III su 97.8 0.00049 1.1E-08 79.9 15.9 202 156-363 16-231 (620)
131 PRK08451 DNA polymerase III su 97.8 0.00055 1.2E-08 77.6 15.7 174 157-358 15-215 (535)
132 PRK14971 DNA polymerase III su 97.8 0.00047 1E-08 80.5 15.7 183 156-363 17-225 (614)
133 KOG2543 Origin recognition com 97.7 0.0002 4.3E-09 74.8 10.8 168 155-328 5-192 (438)
134 PTZ00361 26 proteosome regulat 97.7 0.0002 4.4E-09 79.4 11.7 170 157-354 184-388 (438)
135 PF14516 AAA_35: AAA-like doma 97.7 0.0057 1.2E-07 66.3 22.7 199 157-368 12-246 (331)
136 KOG3665 ZYG-1-like serine/thre 97.7 1E-05 2.2E-10 95.0 1.5 136 539-684 122-261 (699)
137 PRK06620 hypothetical protein; 97.7 0.00027 5.9E-09 71.2 11.4 153 155-355 16-183 (214)
138 TIGR02639 ClpA ATP-dependent C 97.7 0.00027 5.8E-09 85.2 13.2 154 157-329 183-358 (731)
139 TIGR02881 spore_V_K stage V sp 97.7 0.00035 7.6E-09 73.3 12.1 44 158-201 8-66 (261)
140 KOG2982 Uncharacterized conser 97.7 1.2E-05 2.6E-10 80.4 1.0 105 540-644 46-156 (418)
141 PRK14088 dnaA chromosomal repl 97.7 0.00033 7.1E-09 78.8 12.2 179 155-356 105-300 (440)
142 TIGR02880 cbbX_cfxQ probable R 97.7 0.00075 1.6E-08 71.3 14.0 132 179-331 60-210 (284)
143 PRK15386 type III secretion pr 97.6 0.00013 2.7E-09 79.0 7.9 59 517-580 52-112 (426)
144 CHL00181 cbbX CbbX; Provisiona 97.6 0.00083 1.8E-08 70.9 14.0 133 178-331 60-211 (287)
145 PHA02544 44 clamp loader, smal 97.6 0.00042 9.1E-09 75.3 12.2 145 156-327 21-171 (316)
146 PRK14950 DNA polymerase III su 97.6 0.0013 2.8E-08 77.0 16.8 190 156-358 16-218 (585)
147 PTZ00454 26S protease regulato 97.6 0.00079 1.7E-08 74.3 14.0 170 157-354 146-350 (398)
148 PRK06305 DNA polymerase III su 97.6 0.0012 2.5E-08 74.6 15.5 181 157-363 18-225 (451)
149 PRK07133 DNA polymerase III su 97.6 0.0012 2.7E-08 76.9 15.9 189 156-363 18-222 (725)
150 TIGR00362 DnaA chromosomal rep 97.6 0.00047 1E-08 77.5 11.9 158 177-357 136-306 (405)
151 KOG3665 ZYG-1-like serine/thre 97.6 3.7E-05 8.1E-10 90.4 3.0 129 517-647 122-263 (699)
152 PRK12422 chromosomal replicati 97.6 0.00034 7.5E-09 78.4 10.4 152 177-353 141-305 (445)
153 PRK14948 DNA polymerase III su 97.5 0.0018 3.8E-08 75.8 16.4 191 157-359 17-220 (620)
154 PRK00149 dnaA chromosomal repl 97.5 0.00045 9.8E-09 78.6 11.2 180 155-357 122-318 (450)
155 PRK06647 DNA polymerase III su 97.5 0.002 4.3E-08 74.4 16.3 193 156-361 16-221 (563)
156 CHL00095 clpC Clp protease ATP 97.5 0.00055 1.2E-08 83.6 12.3 154 157-328 180-353 (821)
157 TIGR03689 pup_AAA proteasome A 97.5 0.00096 2.1E-08 75.3 12.9 156 158-330 184-379 (512)
158 PRK14953 DNA polymerase III su 97.5 0.0029 6.3E-08 71.8 16.9 173 157-358 17-217 (486)
159 PRK15386 type III secretion pr 97.5 0.00017 3.7E-09 78.0 6.4 70 699-790 52-121 (426)
160 KOG2227 Pre-initiation complex 97.5 0.0042 9.2E-08 66.9 16.6 206 156-365 150-376 (529)
161 TIGR03346 chaperone_ClpB ATP-d 97.5 0.00088 1.9E-08 82.1 13.4 154 157-329 174-349 (852)
162 PRK10865 protein disaggregatio 97.5 0.00068 1.5E-08 82.7 12.3 153 157-329 179-354 (857)
163 COG2255 RuvB Holliday junction 97.5 0.01 2.2E-07 60.0 18.1 168 158-360 28-222 (332)
164 PRK11034 clpA ATP-dependent Cl 97.4 0.00071 1.5E-08 80.6 11.4 155 157-329 187-362 (758)
165 PRK05563 DNA polymerase III su 97.4 0.0036 7.8E-08 72.6 16.4 193 156-362 16-222 (559)
166 COG1222 RPT1 ATP-dependent 26S 97.4 0.0022 4.7E-08 66.8 12.8 196 158-381 153-392 (406)
167 PRK14086 dnaA chromosomal repl 97.4 0.0017 3.7E-08 74.3 13.0 154 178-354 315-481 (617)
168 COG3267 ExeA Type II secretory 97.4 0.0084 1.8E-07 59.8 16.0 183 174-363 48-247 (269)
169 KOG1947 Leucine rich repeat pr 97.4 3E-05 6.6E-10 89.9 -1.0 109 537-645 186-306 (482)
170 COG0593 DnaA ATPase involved i 97.3 0.0019 4.1E-08 70.1 12.2 156 155-333 87-261 (408)
171 PRK14965 DNA polymerase III su 97.3 0.0023 5E-08 74.6 13.8 196 156-365 16-225 (576)
172 PRK05707 DNA polymerase III su 97.3 0.0034 7.3E-08 67.6 14.1 95 258-361 105-203 (328)
173 TIGR01241 FtsH_fam ATP-depende 97.3 0.0048 1E-07 71.2 16.1 171 157-354 56-259 (495)
174 TIGR00763 lon ATP-dependent pr 97.3 0.01 2.2E-07 72.2 19.6 45 157-201 321-371 (775)
175 PRK08118 topology modulation p 97.3 0.00017 3.6E-09 69.7 3.0 36 178-213 2-37 (167)
176 COG1373 Predicted ATPase (AAA+ 97.2 0.0047 1E-07 68.6 14.0 163 161-360 22-191 (398)
177 PRK07399 DNA polymerase III su 97.2 0.011 2.5E-07 63.2 16.3 194 157-360 5-220 (314)
178 PF05673 DUF815: Protein of un 97.2 0.0096 2.1E-07 59.7 14.4 46 156-201 27-76 (249)
179 KOG4579 Leucine-rich repeat (L 97.2 4.9E-05 1.1E-09 67.4 -1.5 87 518-605 54-142 (177)
180 smart00382 AAA ATPases associa 97.2 0.0013 2.8E-08 61.6 8.1 89 177-272 2-91 (148)
181 KOG1644 U2-associated snRNP A' 97.2 0.00048 1E-08 65.6 4.8 122 520-644 22-150 (233)
182 PRK10536 hypothetical protein; 97.2 0.0041 8.9E-08 63.1 11.5 135 158-301 57-215 (262)
183 PRK08116 hypothetical protein; 97.2 0.00056 1.2E-08 71.5 5.7 101 178-297 115-219 (268)
184 KOG2004 Mitochondrial ATP-depe 97.1 0.0065 1.4E-07 68.7 13.8 94 159-270 414-516 (906)
185 PRK12608 transcription termina 97.1 0.003 6.6E-08 67.7 10.6 105 164-270 119-231 (380)
186 PRK07261 topology modulation p 97.1 0.0013 2.8E-08 63.9 7.1 66 179-269 2-67 (171)
187 PRK08769 DNA polymerase III su 97.1 0.015 3.3E-07 61.9 15.6 181 162-362 10-209 (319)
188 PRK08058 DNA polymerase III su 97.1 0.012 2.6E-07 63.8 15.0 143 158-327 7-180 (329)
189 CHL00176 ftsH cell division pr 97.1 0.0056 1.2E-07 71.7 13.2 170 157-353 184-386 (638)
190 TIGR00602 rad24 checkpoint pro 97.0 0.0029 6.2E-08 73.5 10.1 45 157-201 85-134 (637)
191 PRK12377 putative replication 97.0 0.0019 4E-08 66.3 7.5 75 176-270 100-174 (248)
192 PF00004 AAA: ATPase family as 97.0 0.0015 3.2E-08 60.5 6.3 22 180-201 1-22 (132)
193 PF04665 Pox_A32: Poxvirus A32 96.9 0.002 4.4E-08 65.0 7.1 36 178-216 14-49 (241)
194 PF13177 DNA_pol3_delta2: DNA 96.9 0.0065 1.4E-07 58.3 10.2 137 160-317 1-162 (162)
195 PRK10787 DNA-binding ATP-depen 96.9 0.022 4.8E-07 68.6 16.7 46 156-201 322-373 (784)
196 PRK06871 DNA polymerase III su 96.9 0.039 8.5E-07 59.0 16.7 174 163-358 9-200 (325)
197 PF02562 PhoH: PhoH-like prote 96.8 0.0014 3E-08 64.6 4.8 128 160-298 4-155 (205)
198 KOG2123 Uncharacterized conser 96.8 0.00011 2.4E-09 73.0 -3.0 100 538-640 18-123 (388)
199 KOG1947 Leucine rich repeat pr 96.8 0.00016 3.4E-09 83.9 -2.4 220 606-856 185-416 (482)
200 PHA00729 NTP-binding motif con 96.8 0.0053 1.2E-07 61.3 8.5 36 166-201 6-41 (226)
201 KOG0991 Replication factor C, 96.8 0.0037 7.9E-08 60.8 6.9 91 157-271 28-125 (333)
202 PRK06835 DNA replication prote 96.8 0.021 4.6E-07 61.3 13.6 37 177-216 183-219 (329)
203 COG0466 Lon ATP-dependent Lon 96.7 0.012 2.6E-07 67.0 11.9 152 159-329 326-508 (782)
204 KOG2739 Leucine-rich acidic nu 96.7 0.0008 1.7E-08 67.1 1.9 106 536-644 40-153 (260)
205 PRK06090 DNA polymerase III su 96.7 0.05 1.1E-06 58.0 15.5 176 163-361 10-201 (319)
206 PF00448 SRP54: SRP54-type pro 96.7 0.0057 1.2E-07 60.6 7.9 89 177-268 1-92 (196)
207 KOG2739 Leucine-rich acidic nu 96.7 0.0011 2.4E-08 66.1 2.7 112 514-626 40-159 (260)
208 PRK08181 transposase; Validate 96.6 0.0026 5.5E-08 66.2 5.2 78 170-270 101-178 (269)
209 TIGR02639 ClpA ATP-dependent C 96.6 0.011 2.3E-07 71.6 11.3 101 157-271 455-565 (731)
210 PRK07993 DNA polymerase III su 96.6 0.057 1.2E-06 58.4 15.6 177 163-359 9-202 (334)
211 PF10443 RNA12: RNA12 protein; 96.6 0.079 1.7E-06 57.6 16.2 202 161-372 1-289 (431)
212 PRK06921 hypothetical protein; 96.6 0.0021 4.6E-08 67.1 4.2 39 176-216 116-154 (266)
213 KOG0741 AAA+-type ATPase [Post 96.5 0.027 5.8E-07 61.6 12.3 146 176-351 537-704 (744)
214 TIGR01243 CDC48 AAA family ATP 96.5 0.029 6.3E-07 68.1 14.2 170 158-355 455-657 (733)
215 TIGR02640 gas_vesic_GvpN gas v 96.5 0.044 9.6E-07 57.4 13.7 57 162-226 8-64 (262)
216 PRK09183 transposase/IS protei 96.5 0.0034 7.5E-08 65.3 5.3 26 176-201 101-126 (259)
217 PF13207 AAA_17: AAA domain; P 96.5 0.0021 4.5E-08 58.5 3.3 23 179-201 1-23 (121)
218 COG1875 NYN ribonuclease and A 96.5 0.0044 9.5E-08 64.7 5.7 133 159-298 227-387 (436)
219 PRK12727 flagellar biosynthesi 96.5 0.084 1.8E-06 59.4 16.0 89 176-269 349-438 (559)
220 PRK06526 transposase; Provisio 96.5 0.0023 5.1E-08 66.1 3.7 26 176-201 97-122 (254)
221 KOG0733 Nuclear AAA ATPase (VC 96.4 0.031 6.8E-07 62.2 12.1 90 158-270 192-293 (802)
222 KOG1514 Origin recognition com 96.4 0.1 2.2E-06 59.5 16.2 196 158-364 398-624 (767)
223 COG5238 RNA1 Ran GTPase-activa 96.4 0.0013 2.8E-08 65.4 1.3 37 537-573 28-68 (388)
224 PRK04296 thymidine kinase; Pro 96.4 0.0031 6.8E-08 62.4 4.0 113 178-300 3-117 (190)
225 cd01133 F1-ATPase_beta F1 ATP 96.4 0.0096 2.1E-07 61.5 7.5 93 175-270 67-174 (274)
226 TIGR01243 CDC48 AAA family ATP 96.3 0.03 6.5E-07 68.0 12.7 171 158-356 180-382 (733)
227 smart00763 AAA_PrkA PrkA AAA d 96.3 0.0049 1.1E-07 65.9 5.1 45 157-201 52-102 (361)
228 TIGR02237 recomb_radB DNA repa 96.2 0.013 2.8E-07 59.2 7.6 48 176-227 11-58 (209)
229 PF08423 Rad51: Rad51; InterP 96.2 0.022 4.8E-07 59.2 9.2 92 176-269 37-143 (256)
230 cd01123 Rad51_DMC1_radA Rad51_ 96.2 0.021 4.5E-07 59.0 9.1 93 176-270 18-126 (235)
231 TIGR02012 tigrfam_recA protein 96.2 0.013 2.8E-07 62.3 7.4 87 176-270 54-144 (321)
232 cd01393 recA_like RecA is a b 96.2 0.029 6.4E-07 57.4 10.0 91 176-270 18-125 (226)
233 PRK06964 DNA polymerase III su 96.2 0.16 3.5E-06 54.7 15.8 91 258-361 131-225 (342)
234 CHL00195 ycf46 Ycf46; Provisio 96.1 0.044 9.5E-07 62.2 12.0 170 157-354 229-428 (489)
235 PRK09361 radB DNA repair and r 96.1 0.015 3.3E-07 59.5 7.8 89 176-269 22-117 (225)
236 cd00983 recA RecA is a bacter 96.1 0.013 2.9E-07 62.2 7.3 87 176-270 54-144 (325)
237 PRK07952 DNA replication prote 96.1 0.032 6.9E-07 57.2 9.6 89 164-271 84-174 (244)
238 COG1223 Predicted ATPase (AAA+ 96.1 0.11 2.4E-06 51.8 12.6 170 157-354 122-318 (368)
239 PRK06696 uridine kinase; Valid 96.1 0.0092 2E-07 60.9 5.6 42 160-201 2-46 (223)
240 PRK04132 replication factor C 96.0 0.071 1.5E-06 64.0 13.6 153 185-361 574-732 (846)
241 KOG0730 AAA+-type ATPase [Post 96.0 0.12 2.5E-06 58.7 14.1 163 157-345 435-631 (693)
242 TIGR03346 chaperone_ClpB ATP-d 96.0 0.021 4.6E-07 70.2 9.4 60 156-218 565-633 (852)
243 PRK10865 protein disaggregatio 96.0 0.048 1E-06 66.8 12.3 45 157-201 569-622 (857)
244 KOG0652 26S proteasome regulat 96.0 0.04 8.7E-07 54.6 9.2 196 146-366 159-392 (424)
245 PRK09354 recA recombinase A; P 96.0 0.019 4.1E-07 61.6 7.5 87 176-270 59-149 (349)
246 CHL00095 clpC Clp protease ATP 96.0 0.018 3.8E-07 70.7 8.3 105 156-271 509-623 (821)
247 COG1484 DnaC DNA replication p 95.9 0.03 6.4E-07 58.1 8.7 75 176-270 104-178 (254)
248 PF07728 AAA_5: AAA domain (dy 95.9 0.0059 1.3E-07 57.1 3.3 42 180-227 2-43 (139)
249 PRK05541 adenylylsulfate kinas 95.9 0.016 3.5E-07 56.7 6.5 36 176-214 6-41 (176)
250 PF07693 KAP_NTPase: KAP famil 95.9 0.095 2.1E-06 57.1 13.3 40 162-201 2-44 (325)
251 cd01120 RecA-like_NTPases RecA 95.9 0.038 8.3E-07 53.1 9.1 40 179-221 1-40 (165)
252 PRK10733 hflB ATP-dependent me 95.9 0.067 1.5E-06 63.5 12.7 132 178-332 186-338 (644)
253 TIGR03345 VI_ClpV1 type VI sec 95.9 0.013 2.8E-07 71.5 6.9 46 156-201 566-620 (852)
254 COG2812 DnaX DNA polymerase II 95.9 0.064 1.4E-06 60.4 11.7 185 157-356 17-215 (515)
255 cd01394 radB RadB. The archaea 95.9 0.036 7.8E-07 56.4 9.0 43 176-221 18-60 (218)
256 COG0542 clpA ATP-binding subun 95.9 0.068 1.5E-06 62.8 12.0 154 157-329 171-346 (786)
257 cd00561 CobA_CobO_BtuR ATP:cor 95.8 0.019 4E-07 54.3 5.9 117 178-300 3-139 (159)
258 KOG2123 Uncharacterized conser 95.8 0.00055 1.2E-08 68.2 -4.4 96 518-615 20-123 (388)
259 COG0572 Udk Uridine kinase [Nu 95.8 0.025 5.5E-07 55.8 7.0 79 176-260 7-85 (218)
260 COG5238 RNA1 Ran GTPase-activa 95.8 0.013 2.9E-07 58.4 5.0 67 719-792 209-283 (388)
261 KOG0735 AAA+-type ATPase [Post 95.7 0.026 5.6E-07 64.0 7.6 74 176-270 430-505 (952)
262 COG4608 AppF ABC-type oligopep 95.7 0.047 1E-06 55.5 8.8 129 175-307 37-178 (268)
263 PRK08939 primosomal protein Dn 95.7 0.048 1E-06 58.1 9.3 116 160-297 135-259 (306)
264 PRK06547 hypothetical protein; 95.7 0.015 3.3E-07 56.2 5.0 36 166-201 4-39 (172)
265 PF13306 LRR_5: Leucine rich r 95.7 0.034 7.4E-07 51.1 7.2 101 536-642 9-111 (129)
266 KOG0733 Nuclear AAA ATPase (VC 95.7 0.094 2E-06 58.6 11.3 154 176-354 544-717 (802)
267 COG0542 clpA ATP-binding subun 95.7 0.3 6.4E-06 57.7 16.1 105 156-271 491-605 (786)
268 TIGR03499 FlhF flagellar biosy 95.6 0.046 9.9E-07 57.8 8.9 88 176-268 193-281 (282)
269 TIGR02238 recomb_DMC1 meiotic 95.6 0.039 8.5E-07 58.9 8.5 92 176-269 95-201 (313)
270 COG0470 HolB ATPase involved i 95.6 0.058 1.3E-06 58.8 10.1 44 158-201 3-48 (325)
271 KOG1969 DNA replication checkp 95.6 0.023 5E-07 64.6 6.8 73 176-271 325-399 (877)
272 PRK00771 signal recognition pa 95.6 0.073 1.6E-06 59.4 10.8 90 176-269 94-185 (437)
273 PRK15455 PrkA family serine pr 95.6 0.014 3E-07 65.8 5.0 44 158-201 78-127 (644)
274 cd03115 SRP The signal recogni 95.6 0.045 9.8E-07 53.3 8.2 23 179-201 2-24 (173)
275 PF00485 PRK: Phosphoribulokin 95.6 0.086 1.9E-06 52.4 10.2 82 179-263 1-87 (194)
276 KOG0744 AAA+-type ATPase [Post 95.5 0.023 5E-07 58.3 5.8 81 177-270 177-261 (423)
277 PRK05800 cobU adenosylcobinami 95.5 0.0073 1.6E-07 58.3 2.2 84 178-269 2-86 (170)
278 TIGR00959 ffh signal recogniti 95.5 0.06 1.3E-06 59.9 9.5 92 176-269 98-192 (428)
279 KOG2228 Origin recognition com 95.5 0.15 3.2E-06 53.1 11.3 167 157-330 25-220 (408)
280 PLN03187 meiotic recombination 95.4 0.061 1.3E-06 58.0 9.0 93 176-269 125-231 (344)
281 PRK10867 signal recognition pa 95.4 0.063 1.4E-06 59.7 9.2 91 176-269 99-193 (433)
282 cd03247 ABCC_cytochrome_bd The 95.4 0.063 1.4E-06 52.6 8.3 127 176-313 27-169 (178)
283 PRK11034 clpA ATP-dependent Cl 95.3 0.028 6E-07 67.3 6.6 45 157-201 459-512 (758)
284 PF01695 IstB_IS21: IstB-like 95.3 0.048 1E-06 53.2 7.2 74 176-270 46-119 (178)
285 PF13306 LRR_5: Leucine rich r 95.3 0.045 9.8E-07 50.2 6.8 118 513-637 8-129 (129)
286 COG2884 FtsE Predicted ATPase 95.3 0.048 1E-06 51.9 6.5 123 175-305 26-203 (223)
287 PRK14722 flhF flagellar biosyn 95.3 0.063 1.4E-06 58.4 8.4 89 176-269 136-225 (374)
288 COG1618 Predicted nucleotide k 95.2 0.021 4.6E-07 52.7 4.0 25 177-201 5-29 (179)
289 PRK08699 DNA polymerase III su 95.2 0.15 3.2E-06 55.0 11.2 25 177-201 21-45 (325)
290 PF12061 DUF3542: Protein of u 95.2 0.048 1E-06 55.5 6.7 76 11-93 298-373 (402)
291 PF13238 AAA_18: AAA domain; P 95.2 0.015 3.2E-07 53.5 3.0 22 180-201 1-22 (129)
292 cd03238 ABC_UvrA The excision 95.2 0.058 1.3E-06 52.4 7.3 125 176-313 20-161 (176)
293 PRK07667 uridine kinase; Provi 95.2 0.026 5.6E-07 56.1 4.9 37 165-201 3-41 (193)
294 KOG3864 Uncharacterized conser 95.2 0.0025 5.5E-08 61.0 -2.1 62 721-790 122-185 (221)
295 cd01135 V_A-ATPase_B V/A-type 95.2 0.081 1.7E-06 54.6 8.5 97 175-271 67-178 (276)
296 cd03223 ABCD_peroxisomal_ALDP 95.2 0.077 1.7E-06 51.3 8.1 125 176-313 26-160 (166)
297 PRK14974 cell division protein 95.2 0.16 3.5E-06 54.6 11.2 91 176-270 139-233 (336)
298 cd01131 PilT Pilus retraction 95.2 0.021 4.6E-07 56.9 4.3 109 178-301 2-111 (198)
299 TIGR03877 thermo_KaiC_1 KaiC d 95.2 0.13 2.7E-06 53.1 10.1 49 176-229 20-68 (237)
300 PTZ00301 uridine kinase; Provi 95.1 0.038 8.2E-07 55.3 5.9 25 177-201 3-27 (210)
301 PLN00020 ribulose bisphosphate 95.1 0.022 4.7E-07 60.6 4.2 26 176-201 147-172 (413)
302 PRK12678 transcription termina 95.1 0.027 6E-07 63.1 5.2 100 167-270 405-514 (672)
303 cd01121 Sms Sms (bacterial rad 95.1 0.069 1.5E-06 58.5 8.3 86 176-270 81-169 (372)
304 cd03214 ABC_Iron-Siderophores_ 95.1 0.052 1.1E-06 53.3 6.7 124 176-303 24-162 (180)
305 cd02019 NK Nucleoside/nucleoti 95.1 0.018 3.9E-07 46.2 2.8 23 179-201 1-23 (69)
306 PRK06067 flagellar accessory p 95.1 0.097 2.1E-06 53.9 9.0 88 176-269 24-130 (234)
307 KOG0734 AAA+-type ATPase conta 95.1 0.054 1.2E-06 59.4 7.1 45 157-201 305-361 (752)
308 PRK08233 hypothetical protein; 95.1 0.019 4.2E-07 56.5 3.6 25 177-201 3-27 (182)
309 TIGR02239 recomb_RAD51 DNA rep 95.0 0.071 1.5E-06 57.2 8.0 59 176-235 95-156 (316)
310 COG1428 Deoxynucleoside kinase 95.0 0.019 4.1E-07 55.8 3.2 25 177-201 4-28 (216)
311 TIGR00064 ftsY signal recognit 95.0 0.12 2.6E-06 54.2 9.5 90 176-269 71-164 (272)
312 PRK09270 nucleoside triphospha 95.0 0.032 6.8E-07 57.2 5.0 27 175-201 31-57 (229)
313 PRK04301 radA DNA repair and r 94.9 0.12 2.6E-06 55.9 9.6 57 176-234 101-161 (317)
314 PRK10463 hydrogenase nickel in 94.9 0.096 2.1E-06 54.6 8.3 36 166-201 93-128 (290)
315 PF00154 RecA: recA bacterial 94.9 0.088 1.9E-06 55.9 8.2 88 176-271 52-143 (322)
316 PF12775 AAA_7: P-loop contain 94.9 0.031 6.8E-07 58.5 4.9 58 166-227 23-80 (272)
317 COG1136 SalX ABC-type antimicr 94.9 0.12 2.7E-06 51.6 8.7 130 175-313 29-215 (226)
318 TIGR00554 panK_bact pantothena 94.9 0.16 3.5E-06 53.4 10.1 80 175-259 60-141 (290)
319 COG1102 Cmk Cytidylate kinase 94.9 0.057 1.2E-06 50.0 5.7 45 179-237 2-46 (179)
320 COG0488 Uup ATPase components 94.8 0.13 2.8E-06 58.9 9.8 259 11-315 213-511 (530)
321 PRK05480 uridine/cytidine kina 94.8 0.025 5.3E-07 57.2 3.6 27 175-201 4-30 (209)
322 PRK12724 flagellar biosynthesi 94.8 0.095 2.1E-06 57.4 8.2 25 177-201 223-247 (432)
323 PRK06002 fliI flagellum-specif 94.8 0.075 1.6E-06 58.9 7.5 91 176-270 164-265 (450)
324 COG0464 SpoVK ATPases of the A 94.8 0.27 5.8E-06 57.0 12.5 133 176-331 275-425 (494)
325 PF00560 LRR_1: Leucine Rich R 94.8 0.012 2.7E-07 34.9 0.8 13 590-602 4-16 (22)
326 TIGR01425 SRP54_euk signal rec 94.7 0.12 2.5E-06 57.3 8.9 26 176-201 99-124 (429)
327 PRK11889 flhF flagellar biosyn 94.7 0.15 3.2E-06 55.3 9.2 89 176-269 240-330 (436)
328 cd02025 PanK Pantothenate kina 94.7 0.13 2.9E-06 52.1 8.7 23 179-201 1-23 (220)
329 PTZ00035 Rad51 protein; Provis 94.7 0.15 3.4E-06 55.1 9.6 92 176-269 117-223 (337)
330 PF13671 AAA_33: AAA domain; P 94.7 0.026 5.6E-07 53.0 3.3 23 179-201 1-23 (143)
331 PRK13531 regulatory ATPase Rav 94.7 0.048 1E-06 60.7 5.8 44 156-201 20-63 (498)
332 TIGR00390 hslU ATP-dependent p 94.7 0.069 1.5E-06 58.3 6.8 47 155-201 11-71 (441)
333 TIGR00235 udk uridine kinase. 94.7 0.027 5.9E-07 56.7 3.6 26 176-201 5-30 (207)
334 cd03246 ABCC_Protease_Secretio 94.7 0.094 2E-06 51.1 7.3 127 176-313 27-168 (173)
335 KOG0728 26S proteasome regulat 94.7 0.31 6.7E-06 48.2 10.5 183 158-364 149-366 (404)
336 cd03228 ABCC_MRP_Like The MRP 94.6 0.12 2.7E-06 50.1 8.0 127 175-313 26-167 (171)
337 PF00560 LRR_1: Leucine Rich R 94.6 0.014 2.9E-07 34.8 0.7 21 564-584 1-21 (22)
338 cd03222 ABC_RNaseL_inhibitor T 94.6 0.048 1.1E-06 53.0 4.9 27 175-201 23-49 (177)
339 TIGR01360 aden_kin_iso1 adenyl 94.5 0.03 6.5E-07 55.4 3.5 26 176-201 2-27 (188)
340 PRK03839 putative kinase; Prov 94.5 0.029 6.3E-07 55.1 3.3 23 179-201 2-24 (180)
341 KOG0743 AAA+-type ATPase [Post 94.5 1.4 3E-05 48.3 15.9 150 178-366 236-414 (457)
342 PRK06762 hypothetical protein; 94.5 0.031 6.8E-07 54.1 3.5 25 177-201 2-26 (166)
343 TIGR03881 KaiC_arch_4 KaiC dom 94.5 0.18 3.9E-06 51.7 9.3 41 176-219 19-59 (229)
344 COG0563 Adk Adenylate kinase a 94.5 0.056 1.2E-06 52.5 5.1 23 179-201 2-24 (178)
345 COG2607 Predicted ATPase (AAA+ 94.5 0.2 4.3E-06 49.6 8.7 45 157-201 61-109 (287)
346 PF13481 AAA_25: AAA domain; P 94.5 0.13 2.8E-06 51.1 8.0 43 177-219 32-81 (193)
347 TIGR00708 cobA cob(I)alamin ad 94.5 0.14 3E-06 49.1 7.5 119 177-300 5-141 (173)
348 cd03216 ABC_Carb_Monos_I This 94.5 0.058 1.3E-06 51.9 5.2 117 176-303 25-146 (163)
349 TIGR02858 spore_III_AA stage I 94.4 0.21 4.5E-06 52.1 9.5 128 165-302 98-232 (270)
350 PRK05342 clpX ATP-dependent pr 94.4 0.11 2.3E-06 57.8 7.7 47 155-201 70-132 (412)
351 PRK12597 F0F1 ATP synthase sub 94.4 0.091 2E-06 58.7 7.1 94 175-270 141-248 (461)
352 PRK12723 flagellar biosynthesi 94.4 0.18 4E-06 55.3 9.4 90 176-269 173-264 (388)
353 COG0468 RecA RecA/RadA recombi 94.4 0.16 3.4E-06 52.8 8.4 90 176-269 59-151 (279)
354 COG1066 Sms Predicted ATP-depe 94.3 0.12 2.6E-06 55.4 7.4 85 176-270 92-179 (456)
355 PRK08972 fliI flagellum-specif 94.3 0.074 1.6E-06 58.7 6.1 91 175-270 160-263 (444)
356 PRK07132 DNA polymerase III su 94.3 1.5 3.3E-05 46.5 15.7 169 165-362 5-186 (299)
357 PTZ00088 adenylate kinase 1; P 94.3 0.034 7.3E-07 56.6 3.3 23 179-201 8-30 (229)
358 PRK09280 F0F1 ATP synthase sub 94.3 0.2 4.2E-06 55.9 9.4 94 175-270 142-249 (463)
359 PRK09519 recA DNA recombinatio 94.3 0.12 2.6E-06 61.3 8.2 87 176-270 59-149 (790)
360 PF03205 MobB: Molybdopterin g 94.3 0.059 1.3E-06 50.2 4.6 39 178-218 1-39 (140)
361 PRK04328 hypothetical protein; 94.3 0.14 3.1E-06 53.1 7.9 41 176-219 22-62 (249)
362 PRK00625 shikimate kinase; Pro 94.3 0.034 7.3E-07 53.9 3.1 23 179-201 2-24 (173)
363 PF01583 APS_kinase: Adenylyls 94.3 0.051 1.1E-06 51.1 4.1 36 177-215 2-37 (156)
364 TIGR02236 recomb_radA DNA repa 94.2 0.25 5.3E-06 53.3 10.0 58 176-235 94-155 (310)
365 PF06309 Torsin: Torsin; Inte 94.2 0.19 4.1E-06 45.0 7.3 45 157-201 26-77 (127)
366 PF00006 ATP-synt_ab: ATP synt 94.2 0.24 5.3E-06 49.6 9.1 97 168-270 5-116 (215)
367 KOG0731 AAA+-type ATPase conta 94.2 0.21 4.5E-06 58.5 9.6 173 158-357 313-520 (774)
368 PLN03186 DNA repair protein RA 94.2 0.21 4.5E-06 54.0 9.2 59 176-236 122-184 (342)
369 KOG3347 Predicted nucleotide k 94.2 0.069 1.5E-06 48.6 4.5 72 177-261 7-78 (176)
370 cd01124 KaiC KaiC is a circadi 94.2 0.14 3.1E-06 50.5 7.5 44 180-228 2-45 (187)
371 PRK05201 hslU ATP-dependent pr 94.2 0.1 2.3E-06 56.9 6.8 47 155-201 14-74 (443)
372 cd02027 APSK Adenosine 5'-phos 94.2 0.13 2.8E-06 48.6 6.8 23 179-201 1-23 (149)
373 PRK05439 pantothenate kinase; 94.2 0.34 7.3E-06 51.4 10.4 83 175-260 84-166 (311)
374 TIGR03498 FliI_clade3 flagella 94.2 0.19 4.2E-06 55.7 8.9 92 175-270 138-241 (418)
375 TIGR03878 thermo_KaiC_2 KaiC d 94.2 0.22 4.7E-06 52.0 9.0 40 176-218 35-74 (259)
376 KOG2170 ATPase of the AAA+ sup 94.1 0.17 3.7E-06 51.9 7.7 97 156-271 82-190 (344)
377 KOG2035 Replication factor C, 94.1 0.33 7.2E-06 49.1 9.5 205 158-384 15-261 (351)
378 PRK08149 ATP synthase SpaL; Va 94.1 0.19 4.2E-06 55.6 8.8 91 175-270 149-252 (428)
379 cd01129 PulE-GspE PulE/GspE Th 94.1 0.091 2E-06 54.9 6.1 103 160-275 63-165 (264)
380 cd02028 UMPK_like Uridine mono 94.1 0.1 2.3E-06 51.0 6.2 23 179-201 1-23 (179)
381 PRK04040 adenylate kinase; Pro 94.1 0.042 9.1E-07 54.1 3.4 24 178-201 3-26 (188)
382 PF00910 RNA_helicase: RNA hel 94.1 0.036 7.7E-07 49.0 2.5 22 180-201 1-22 (107)
383 PF07726 AAA_3: ATPase family 94.1 0.037 7.9E-07 49.6 2.5 27 180-209 2-28 (131)
384 PRK05973 replicative DNA helic 94.1 0.28 6E-06 49.9 9.2 49 176-229 63-111 (237)
385 PTZ00185 ATPase alpha subunit; 94.0 0.23 5.1E-06 55.4 9.1 94 176-270 188-300 (574)
386 cd01136 ATPase_flagellum-secre 94.0 0.2 4.2E-06 53.6 8.4 91 175-270 67-170 (326)
387 PRK06217 hypothetical protein; 94.0 0.043 9.2E-07 54.1 3.2 23 179-201 3-25 (183)
388 cd03230 ABC_DR_subfamily_A Thi 94.0 0.1 2.2E-06 50.9 5.8 117 176-303 25-159 (173)
389 COG3640 CooC CO dehydrogenase 94.0 0.089 1.9E-06 52.0 5.2 43 179-223 2-44 (255)
390 TIGR03575 selen_PSTK_euk L-ser 94.0 0.17 3.6E-06 54.4 7.8 22 180-201 2-23 (340)
391 cd01132 F1_ATPase_alpha F1 ATP 94.0 0.24 5.1E-06 51.2 8.6 97 176-277 68-180 (274)
392 PF05970 PIF1: PIF1-like helic 94.0 0.11 2.3E-06 57.4 6.5 38 164-201 9-46 (364)
393 PRK05703 flhF flagellar biosyn 94.0 0.17 3.7E-06 56.6 8.2 87 177-268 221-308 (424)
394 PRK05922 type III secretion sy 93.9 0.14 3E-06 56.7 7.3 91 175-270 155-258 (434)
395 TIGR00382 clpX endopeptidase C 93.9 0.18 4E-06 55.7 8.2 47 155-201 76-140 (413)
396 PRK08927 fliI flagellum-specif 93.9 0.18 3.9E-06 55.9 8.1 91 175-270 156-259 (442)
397 TIGR03305 alt_F1F0_F1_bet alte 93.9 0.14 3E-06 57.0 7.1 94 175-270 136-243 (449)
398 TIGR00150 HI0065_YjeE ATPase, 93.9 0.1 2.2E-06 47.7 5.1 26 176-201 21-46 (133)
399 cd02024 NRK1 Nicotinamide ribo 93.9 0.041 8.8E-07 53.9 2.7 23 179-201 1-23 (187)
400 TIGR01359 UMP_CMP_kin_fam UMP- 93.9 0.04 8.8E-07 54.3 2.8 23 179-201 1-23 (183)
401 PRK08533 flagellar accessory p 93.8 0.32 7E-06 49.7 9.4 49 176-229 23-71 (230)
402 COG0541 Ffh Signal recognition 93.8 2.4 5.1E-05 46.3 15.9 59 176-237 99-158 (451)
403 cd02023 UMPK Uridine monophosp 93.8 0.042 9.1E-07 55.0 2.8 23 179-201 1-23 (198)
404 COG4088 Predicted nucleotide k 93.8 0.037 7.9E-07 53.2 2.1 24 178-201 2-25 (261)
405 PF08433 KTI12: Chromatin asso 93.8 0.083 1.8E-06 55.1 4.9 24 178-201 2-25 (270)
406 TIGR02030 BchI-ChlI magnesium 93.7 0.092 2E-06 56.6 5.4 45 157-201 5-49 (337)
407 KOG0729 26S proteasome regulat 93.7 0.29 6.3E-06 48.9 8.2 44 158-201 179-235 (435)
408 PRK12726 flagellar biosynthesi 93.7 0.33 7.1E-06 52.5 9.3 90 176-270 205-296 (407)
409 PRK00131 aroK shikimate kinase 93.7 0.059 1.3E-06 52.6 3.6 25 177-201 4-28 (175)
410 PRK14721 flhF flagellar biosyn 93.6 0.38 8.3E-06 53.3 10.0 61 176-237 190-251 (420)
411 PRK09099 type III secretion sy 93.6 0.23 4.9E-06 55.4 8.3 92 175-270 161-264 (441)
412 cd03221 ABCF_EF-3 ABCF_EF-3 E 93.6 0.17 3.7E-06 47.5 6.4 104 176-303 25-131 (144)
413 COG1936 Predicted nucleotide k 93.6 0.053 1.1E-06 51.0 2.8 20 179-198 2-21 (180)
414 PRK10416 signal recognition pa 93.5 0.37 8.1E-06 51.7 9.5 26 176-201 113-138 (318)
415 TIGR02322 phosphon_PhnN phosph 93.5 0.061 1.3E-06 52.8 3.3 24 178-201 2-25 (179)
416 PF00625 Guanylate_kin: Guanyl 93.5 0.1 2.3E-06 51.3 4.9 37 177-216 2-38 (183)
417 PRK13765 ATP-dependent proteas 93.5 0.15 3.3E-06 59.7 6.9 73 157-234 32-104 (637)
418 PRK10751 molybdopterin-guanine 93.5 0.072 1.6E-06 51.2 3.6 26 176-201 5-30 (173)
419 cd03369 ABCC_NFT1 Domain 2 of 93.5 0.44 9.4E-06 48.0 9.5 26 176-201 33-58 (207)
420 KOG0651 26S proteasome regulat 93.5 0.13 2.8E-06 52.8 5.5 25 177-201 166-190 (388)
421 CHL00081 chlI Mg-protoporyphyr 93.5 0.1 2.3E-06 56.2 5.2 46 156-201 17-62 (350)
422 COG0003 ArsA Predicted ATPase 93.5 0.11 2.4E-06 55.4 5.3 49 177-228 2-50 (322)
423 PRK15453 phosphoribulokinase; 93.4 0.45 9.7E-06 49.3 9.4 26 176-201 4-29 (290)
424 PRK11823 DNA repair protein Ra 93.4 0.23 5E-06 56.1 8.1 85 176-269 79-166 (446)
425 PF06745 KaiC: KaiC; InterPro 93.4 0.1 2.2E-06 53.4 4.8 89 176-270 18-126 (226)
426 TIGR01040 V-ATPase_V1_B V-type 93.4 0.27 5.8E-06 54.5 8.2 95 175-270 139-258 (466)
427 cd00227 CPT Chloramphenicol (C 93.3 0.072 1.6E-06 52.0 3.5 25 177-201 2-26 (175)
428 COG1703 ArgK Putative periplas 93.3 0.14 2.9E-06 52.7 5.4 63 166-229 38-102 (323)
429 PRK00889 adenylylsulfate kinas 93.3 0.079 1.7E-06 51.7 3.8 26 176-201 3-28 (175)
430 COG2401 ABC-type ATPase fused 93.3 0.11 2.4E-06 55.3 5.0 152 159-311 374-580 (593)
431 PRK13949 shikimate kinase; Pro 93.3 0.069 1.5E-06 51.7 3.3 24 178-201 2-25 (169)
432 TIGR01039 atpD ATP synthase, F 93.3 0.23 4.9E-06 55.2 7.6 94 175-270 141-248 (461)
433 COG1124 DppF ABC-type dipeptid 93.3 0.1 2.2E-06 52.0 4.4 27 175-201 31-57 (252)
434 PF03308 ArgK: ArgK protein; 93.3 0.15 3.2E-06 51.7 5.6 61 164-225 14-76 (266)
435 cd02020 CMPK Cytidine monophos 93.3 0.061 1.3E-06 50.7 2.8 23 179-201 1-23 (147)
436 PRK05986 cob(I)alamin adenolsy 93.2 0.26 5.6E-06 48.0 6.9 120 176-300 21-159 (191)
437 cd02021 GntK Gluconate kinase 93.2 0.062 1.3E-06 50.9 2.7 23 179-201 1-23 (150)
438 PRK13947 shikimate kinase; Pro 93.2 0.067 1.5E-06 52.0 3.0 23 179-201 3-25 (171)
439 cd02029 PRK_like Phosphoribulo 93.2 0.36 7.8E-06 49.5 8.2 78 179-259 1-84 (277)
440 PRK14530 adenylate kinase; Pro 93.2 0.072 1.6E-06 54.0 3.3 24 178-201 4-27 (215)
441 KOG0473 Leucine-rich repeat pr 93.1 0.004 8.6E-08 60.6 -5.4 84 536-620 39-122 (326)
442 PRK07594 type III secretion sy 93.1 0.35 7.6E-06 53.7 8.7 91 175-270 153-256 (433)
443 PRK06995 flhF flagellar biosyn 93.1 0.34 7.4E-06 54.6 8.7 59 177-236 256-315 (484)
444 PF00158 Sigma54_activat: Sigm 93.1 0.13 2.7E-06 49.7 4.7 43 159-201 2-46 (168)
445 PF03193 DUF258: Protein of un 93.1 0.14 3E-06 48.4 4.8 34 165-201 26-59 (161)
446 cd00267 ABC_ATPase ABC (ATP-bi 93.1 0.11 2.3E-06 49.8 4.2 116 176-304 24-145 (157)
447 PRK06936 type III secretion sy 93.1 0.28 6.1E-06 54.4 7.9 91 175-270 160-263 (439)
448 COG3598 RepA RecA-family ATPas 93.1 0.32 7E-06 50.3 7.6 59 179-237 91-157 (402)
449 TIGR03263 guanyl_kin guanylate 93.1 0.075 1.6E-06 52.2 3.2 24 178-201 2-25 (180)
450 PRK13407 bchI magnesium chelat 93.0 0.13 2.8E-06 55.4 5.1 46 156-201 8-53 (334)
451 cd01125 repA Hexameric Replica 93.0 0.42 9E-06 49.4 8.8 23 179-201 3-25 (239)
452 PRK05688 fliI flagellum-specif 93.0 0.27 5.9E-06 54.7 7.6 91 175-270 166-269 (451)
453 KOG3354 Gluconate kinase [Carb 93.0 0.33 7.1E-06 44.6 6.7 50 178-236 13-62 (191)
454 TIGR02902 spore_lonB ATP-depen 93.0 0.17 3.8E-06 58.5 6.4 45 157-201 66-110 (531)
455 PRK07721 fliI flagellum-specif 92.9 0.33 7.2E-06 54.3 8.3 92 175-270 156-259 (438)
456 PF05659 RPW8: Arabidopsis bro 92.9 0.49 1.1E-05 44.1 8.1 112 3-130 3-114 (147)
457 cd00071 GMPK Guanosine monopho 92.9 0.086 1.9E-06 49.0 3.2 23 179-201 1-23 (137)
458 TIGR00073 hypB hydrogenase acc 92.9 0.1 2.3E-06 52.5 4.0 31 171-201 16-46 (207)
459 PF10236 DAP3: Mitochondrial r 92.9 2.9 6.3E-05 44.8 15.1 48 310-357 258-305 (309)
460 TIGR00764 lon_rel lon-related 92.9 0.32 7E-06 57.2 8.5 73 157-234 19-91 (608)
461 KOG0736 Peroxisome assembly fa 92.9 0.65 1.4E-05 53.7 10.4 92 157-271 673-776 (953)
462 PRK14723 flhF flagellar biosyn 92.9 0.42 9.1E-06 56.7 9.3 88 177-269 185-273 (767)
463 TIGR01041 ATP_syn_B_arch ATP s 92.9 0.31 6.8E-06 54.6 7.9 94 176-270 140-249 (458)
464 PRK06793 fliI flagellum-specif 92.8 0.57 1.2E-05 52.0 9.8 93 175-271 154-258 (432)
465 TIGR00416 sms DNA repair prote 92.8 0.39 8.4E-06 54.4 8.8 40 176-218 93-132 (454)
466 COG0396 sufC Cysteine desulfur 92.8 0.58 1.3E-05 46.3 8.6 62 250-312 153-217 (251)
467 PRK07196 fliI flagellum-specif 92.8 0.34 7.3E-06 53.8 8.0 27 175-201 153-179 (434)
468 PRK05057 aroK shikimate kinase 92.8 0.096 2.1E-06 50.9 3.4 25 177-201 4-28 (172)
469 COG0467 RAD55 RecA-superfamily 92.8 0.13 2.9E-06 53.8 4.8 42 175-219 21-62 (260)
470 PRK12339 2-phosphoglycerate ki 92.7 0.1 2.2E-06 51.7 3.6 25 177-201 3-27 (197)
471 cd00464 SK Shikimate kinase (S 92.7 0.089 1.9E-06 50.1 3.1 22 180-201 2-23 (154)
472 PF08477 Miro: Miro-like prote 92.7 0.097 2.1E-06 47.2 3.2 22 180-201 2-23 (119)
473 PRK00300 gmk guanylate kinase; 92.6 0.1 2.2E-06 52.6 3.4 26 176-201 4-29 (205)
474 PRK03846 adenylylsulfate kinas 92.6 0.11 2.4E-06 51.8 3.7 27 175-201 22-48 (198)
475 PRK10078 ribose 1,5-bisphospho 92.5 0.097 2.1E-06 51.7 3.1 24 178-201 3-26 (186)
476 PRK13975 thymidylate kinase; P 92.5 0.1 2.3E-06 52.0 3.4 24 178-201 3-26 (196)
477 PF02374 ArsA_ATPase: Anion-tr 92.5 0.13 2.8E-06 55.0 4.2 44 178-224 2-45 (305)
478 cd00820 PEPCK_HprK Phosphoenol 92.5 0.11 2.4E-06 45.3 3.0 23 176-198 14-36 (107)
479 TIGR03324 alt_F1F0_F1_al alter 92.5 0.32 7E-06 54.6 7.4 90 176-270 161-265 (497)
480 COG1419 FlhF Flagellar GTP-bin 92.4 0.98 2.1E-05 49.0 10.5 99 165-268 187-290 (407)
481 TIGR03497 FliI_clade2 flagella 92.3 0.38 8.3E-06 53.4 7.7 91 175-270 135-238 (413)
482 COG2019 AdkA Archaeal adenylat 92.3 0.13 2.8E-06 48.0 3.2 25 177-201 4-28 (189)
483 TIGR01313 therm_gnt_kin carboh 92.3 0.091 2E-06 50.6 2.5 22 180-201 1-22 (163)
484 PRK14527 adenylate kinase; Pro 92.3 0.12 2.7E-06 51.2 3.6 26 176-201 5-30 (191)
485 TIGR00176 mobB molybdopterin-g 92.3 0.15 3.3E-06 48.4 4.0 34 179-214 1-34 (155)
486 CHL00060 atpB ATP synthase CF1 92.2 0.38 8.1E-06 54.0 7.5 94 175-270 159-273 (494)
487 PRK13946 shikimate kinase; Pro 92.2 0.11 2.5E-06 51.0 3.2 25 177-201 10-34 (184)
488 TIGR03496 FliI_clade1 flagella 92.2 0.4 8.6E-06 53.2 7.6 91 175-270 135-238 (411)
489 PF13245 AAA_19: Part of AAA d 92.2 0.34 7.5E-06 39.5 5.4 25 176-200 9-33 (76)
490 PF13504 LRR_7: Leucine rich r 92.2 0.094 2E-06 28.9 1.4 12 588-599 3-14 (17)
491 cd03281 ABC_MSH5_euk MutS5 hom 92.1 0.14 3.1E-06 51.6 3.8 24 177-200 29-52 (213)
492 cd01122 GP4d_helicase GP4d_hel 92.1 0.87 1.9E-05 48.0 9.9 53 176-232 29-81 (271)
493 PF13521 AAA_28: AAA domain; P 92.1 0.12 2.5E-06 49.9 3.0 21 180-200 2-22 (163)
494 PF03266 NTPase_1: NTPase; In 92.0 0.12 2.7E-06 49.7 3.1 22 180-201 2-23 (168)
495 TIGR01420 pilT_fam pilus retra 92.0 0.18 4E-06 55.0 4.8 92 176-276 121-212 (343)
496 cd01672 TMPK Thymidine monopho 92.0 0.29 6.3E-06 48.8 6.0 23 179-201 2-24 (200)
497 PF08298 AAA_PrkA: PrkA AAA do 92.0 0.23 4.9E-06 52.9 5.1 46 156-201 61-112 (358)
498 TIGR01026 fliI_yscN ATPase Fli 91.9 0.46 9.9E-06 53.2 7.8 27 175-201 161-187 (440)
499 PRK13948 shikimate kinase; Pro 91.9 0.15 3.3E-06 49.7 3.6 26 176-201 9-34 (182)
500 KOG1051 Chaperone HSP104 and r 91.9 0.57 1.2E-05 56.2 8.9 101 157-271 563-672 (898)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=1.5e-101 Score=908.10 Aligned_cols=843 Identities=41% Similarity=0.682 Sum_probs=706.8
Q ss_pred HHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHhcCC
Q 002538 14 VLSRCLDCTIRKAAYASELEANLADLQTELQKLIEARNDVLRRVMVAEQRRVKRTDQVQGWLSRVEAVETTAGKLIGDGP 93 (911)
Q Consensus 14 ~~~~l~~~~~~e~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~ae~~~~~~~~~~~~Wl~~l~~~~~~~ed~ld~~~ 93 (911)
.++++...+.+++..+.++++.+..|++++..|+.+++|+ +.++. ....+..|.+.+++++|+++|+++.|.
T Consensus 8 ~~~~~~~~l~~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d~-------~a~~~-~~~~~~~~~e~~~~~~~~~e~~~~~~~ 79 (889)
T KOG4658|consen 8 GVEKLDQLLNRESECLDGKDNYILELKENLKALQSALEDL-------DAKRD-DLERRVNWEEDVGDLVYLAEDIIWLFL 79 (889)
T ss_pred ehhhHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHH-------Hhhcc-hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888888999999999999999999999999999994 44443 246788999999999999999999876
Q ss_pred ccccc----------------ccccCccCCCcchhchhHHHHHHHHHHHHHHhccCCcchhhc-cCCCCCCccccCCccc
Q 002538 94 QETEK----------------LCLGGCCSKDFNSSYKFGKQVVKALRDVKTLEGERFFEVVAE-IAPDQSSVADERPTEA 156 (911)
Q Consensus 94 ~~~~~----------------~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 156 (911)
.+... .|..++|++....-+.+++++.+..+.++.+..++.++.++. ..| ......+|..+
T Consensus 80 v~~~~~~~~~~l~~~~~~~~~~c~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~--~~~~e~~~~~~ 157 (889)
T KOG4658|consen 80 VEEIERKANDLLSTRSVERQRLCLCGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDP--REKVETRPIQS 157 (889)
T ss_pred HHHHHHHHhHHhhhhHHHHHHHhhhhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccc--hhhcccCCCCc
Confidence 54321 233355556666777888999999999999888776766654 222 23344444444
Q ss_pred cc-cchHHHHHHHHHHhccCCceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCccChHHHHHHHHHHcCC
Q 002538 157 IV-KGLESTLEDVWRCLVEESAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDLQIEKNQEIIGKKIGL 235 (911)
Q Consensus 157 ~~-~Gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 235 (911)
.. +|.+..++++++.|.+++..+++|+||||+||||||++++|+...++.+||.++||+||++++...++++|++.++.
T Consensus 158 ~~~VG~e~~~~kl~~~L~~d~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~ 237 (889)
T KOG4658|consen 158 ESDVGLETMLEKLWNRLMEDDVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGL 237 (889)
T ss_pred cccccHHHHHHHHHHHhccCCCCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhcc
Confidence 43 69999999999999998889999999999999999999999994489999999999999999999999999999998
Q ss_pred CCCccCCCCHHHHHHHHHHHhhcceEEEEEcccccccccccccCCCCCCCCCCCcEEEEEcCchhhhhc-cCCcceEEcc
Q 002538 236 FDDSWKNKNLDERALEIFKILREKKFVLLLDDIWERVNLNKVGVPLPSPQSTTASKVVFTTRFINVCGS-MEAHRNFKVE 314 (911)
Q Consensus 236 ~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~~~~~~~~~l~~~~~~~gs~IivTtR~~~v~~~-~~~~~~~~l~ 314 (911)
....+.....++.+..+.+.|++|||||||||||+..+|+.++.++| ...+||||++|||++.||.. |++...++++
T Consensus 238 ~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p--~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~ 315 (889)
T KOG4658|consen 238 LDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFP--SRENGSKVVLTTRSEEVCGRAMGVDYPIEVE 315 (889)
T ss_pred CCcccchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCC--CccCCeEEEEEeccHhhhhccccCCcccccc
Confidence 77666666678999999999999999999999999999999999999 77899999999999999998 8888999999
Q ss_pred CCCHHHHHHHHHHHhCCcccCCCccHHHHHHHHHHHhCCcchHHHHHHhhhccCCCHHHHHHHHHHHHhc-ccccCCCch
Q 002538 315 CLTEKHAWELFQMKVGEETLKSHPHVFELAQVVAKECGGLPLALITIGRAMAYKKTREEWKYAIEVLRRS-TFELAGLEK 393 (911)
Q Consensus 315 ~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~g~~l~~~~~~~~w~~~~~~l~~~-~~~~~~~~~ 393 (911)
+|+++|||.||+++|+.......+.++++|++|+++|+|+|||++++|+.|+.+.+..+|+.+.+.+.+. ..+.+++.+
T Consensus 316 ~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~ 395 (889)
T KOG4658|consen 316 CLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEE 395 (889)
T ss_pred ccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhh
Confidence 9999999999999999886566677999999999999999999999999999999999999999999887 666667788
Q ss_pred hhccccccccCCCChhhhhHHHHHhhcCCCCcccChHHHHHHHHhcCCccC-CcccccchhHhHHHHHHHHhhcccccC-
Q 002538 394 EVYPLLKFSYDCLPNDIIRSCFLYCCLYPEDWNTFKRNLIDCWIGEGFLEE-NDRFGAHNQGYYIVGTLVHACLLEEVE- 471 (911)
Q Consensus 394 ~i~~~l~~sy~~L~~~~~k~cfl~~~~fp~~~~i~~~~li~~w~aeg~i~~-~~~~~~~~~~~~~l~~L~~~~ll~~~~- 471 (911)
.++++|++||++||+ ++|.||+|||+||+||.|+++.|+.+|+||||+.+ +++..++++|++|+.+|++++|++..+
T Consensus 396 ~i~~iLklSyd~L~~-~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~ 474 (889)
T KOG4658|consen 396 SILPILKLSYDNLPE-ELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERD 474 (889)
T ss_pred hhHHhhhccHhhhhH-HHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhccc
Confidence 999999999999996 99999999999999999999999999999999998 678899999999999999999999863
Q ss_pred ---CCceehhHHHHHHHHHHHHhhhhccccEEEEcCCCcccCCCCCCcccceEEEeecCCcccCCCCCCCCCccEEEccc
Q 002538 472 ---DDKVKMHDVIRDMALWIASEIEKEKENILVYAGTGLAVAPGVEGWEKVKRLLLMKNHIKHLPDIPTCPHLLTLFLSH 548 (911)
Q Consensus 472 ---~~~~~mHdlv~d~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~ 548 (911)
..+|+|||+||++|.|+|++.+++++++++..+.+....+....+..+|++++.+|.+..++.-..+++|++|.+.+
T Consensus 475 ~~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~ 554 (889)
T KOG4658|consen 475 EGRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQR 554 (889)
T ss_pred ccceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccchhhccCCCCCCccceEEEee
Confidence 47899999999999999999888888888877766666788888999999999999999999889999999999999
Q ss_pred Cc--ccccChhhhccCCCCcEEEccCC-CCcccCccccCcCCCCEEeccCCCcCCcchhhhccCcCcEEecCCCcccccc
Q 002538 549 NQ--LRWISEDFFQFMPSLKVLNLSFT-KRHKFPSGISKLASLQLIDLSYTSIRGLPEELKALINLKCLNLDQTKFLVTI 625 (911)
Q Consensus 549 ~~--l~~~~~~~~~~l~~L~~L~L~~~-~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~l~~L~~L~~L~L~~~~~l~~l 625 (911)
|. +..++..+|..++.|++|||++| .+.++|++|+.|.+||||+++++.++.+|.++++|++|.+||+..+..+..+
T Consensus 555 n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~ 634 (889)
T KOG4658|consen 555 NSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESI 634 (889)
T ss_pred cchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccc
Confidence 95 78899999999999999999988 6889999999999999999999999999999999999999999999876666
Q ss_pred ChhhhccCccCcEEEecCCCCCcccccCCCcccccCcccchhhhcCCCCCcEEEEEecCchhhHhhhhcccccCcceEEE
Q 002538 626 PRHLISSFSMLHVLRMFGSGSSVFHEASGDSILFDGGELLADELLGLKYLEVLDITLRSRHALQSVLSSHKLRSCTQAIF 705 (911)
Q Consensus 626 p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~ 705 (911)
| ++...|++||+|.+...... .+.....++..|++|+.+.+.......+..+.....+.+..+.+.
T Consensus 635 ~-~i~~~L~~Lr~L~l~~s~~~-------------~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~ 700 (889)
T KOG4658|consen 635 P-GILLELQSLRVLRLPRSALS-------------NDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLS 700 (889)
T ss_pred c-chhhhcccccEEEeeccccc-------------cchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhh
Confidence 5 44677999999999876522 245677888999999999887655533444444444444555555
Q ss_pred eeeccCCCceeecccccccccceEeeccccccceeEecccCccccccccc-cCCccCEEEEecCCCCCCCcccccCCCcc
Q 002538 706 LQCFKDSKSIYAAALADLKHLKKLCISQCEELEELKIDCTGEVKRMCQPY-IFRSLNKVQIYSCPVLKDLTFLVFAPNLK 784 (911)
Q Consensus 706 l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~-~~~~L~~L~L~~c~~l~~l~~l~~l~~L~ 784 (911)
+.++. .....+++..+.+|+.|.|.+|...+.. ..+.... ... .|+++.++.+.+|....++.|....|+|+
T Consensus 701 ~~~~~--~~~~~~~~~~l~~L~~L~i~~~~~~e~~-~~~~~~~----~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~ 773 (889)
T KOG4658|consen 701 IEGCS--KRTLISSLGSLGNLEELSILDCGISEIV-IEWEESL----IVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLT 773 (889)
T ss_pred hcccc--cceeecccccccCcceEEEEcCCCchhh-ccccccc----chhhhHHHHHHHHhhccccccccchhhccCccc
Confidence 54422 2222347888999999999999876532 2232210 001 27789999999999999999988999999
Q ss_pred eEeEecccccccccccCcchhhhhhcCCCCccccccee-ccccccccccccCCcccCCccceEeccccccccCCCCCCCC
Q 002538 785 SIDVRSCSVMKEIVSAGKSADIAEMMGNMSPFAKLQNL-QLVRLQNLKSIYWKLVPFPHLKEIIVHQCNWLKKLPLDSNS 863 (911)
Q Consensus 785 ~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~p~L~~L-~L~~~~~L~~~~~~~~~~p~L~~L~i~~C~~L~~lP~~~~~ 863 (911)
.|.+.+|..++++++...... ........|.++..+ .+.+.+.+.++......++.|+.+.+..||++..+|.....
T Consensus 774 ~l~l~~~~~~e~~i~~~k~~~--~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~~~l~~~~ve~~p~l~~~P~~~~~ 851 (889)
T KOG4658|consen 774 SLSLVSCRLLEDIIPKLKALL--ELKELILPFNKLEGLRMLCSLGGLPQLYWLPLSFLKLEELIVEECPKLGKLPLLSTL 851 (889)
T ss_pred EEEEecccccccCCCHHHHhh--hcccEEecccccccceeeecCCCCceeEecccCccchhheehhcCcccccCcccccc
Confidence 999999999999876433221 111124567777777 57777888888777777888999999999999999998765
Q ss_pred CCCc---ceEEEeccccccccccCCccccccc
Q 002538 864 AKEH---KIVIHGEECWWNKLQWENDATKNAF 892 (911)
Q Consensus 864 ~~~~---l~~~~~~~~~~~~l~w~~~~~~~~~ 892 (911)
.... ......+.+|.+.++|+++.++..+
T Consensus 852 ~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 883 (889)
T KOG4658|consen 852 TIVGCEEKLKEYPDGEWLEGVYWEDELTKLRF 883 (889)
T ss_pred ceeccccceeecCCccceeeEEehhhhhhhhc
Confidence 4222 3334445678889999999888766
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=4.1e-65 Score=635.29 Aligned_cols=623 Identities=20% Similarity=0.284 Sum_probs=400.1
Q ss_pred cccchHHHHHHHHHHhcc--CCceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEe---CCcc-----------
Q 002538 157 IVKGLESTLEDVWRCLVE--ESAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVV---SKDL----------- 220 (911)
Q Consensus 157 ~~~Gr~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~---s~~~----------- 220 (911)
.++||++.++++..+|.. +++++|+||||||+||||||+++|++. ...|+..+|+.. +...
T Consensus 185 ~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l---~~~F~g~vfv~~~~v~~~~~~~~~~~~~~~ 261 (1153)
T PLN03210 185 DFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRL---SRQFQSSVFIDRAFISKSMEIYSSANPDDY 261 (1153)
T ss_pred cccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHH---hhcCCeEEEeeccccccchhhccccccccc
Confidence 466999999999998853 578999999999999999999999987 678998888742 1110
Q ss_pred C-hHHHHHHHHHHcCCCCCccCCCCHHHHHHHHHHHhhcceEEEEEcccccccccccccCCCCCCCCCCCcEEEEEcCch
Q 002538 221 Q-IEKNQEIIGKKIGLFDDSWKNKNLDERALEIFKILREKKFVLLLDDIWERVNLNKVGVPLPSPQSTTASKVVFTTRFI 299 (911)
Q Consensus 221 ~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~~~~~~~~~l~~~~~~~gs~IivTtR~~ 299 (911)
+ ...++++++.++....+ ..... ...+++.+++||+||||||||+..+|+.+..... ..+.||+||||||++
T Consensus 262 ~~~~~l~~~~l~~il~~~~-~~~~~----~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~--~~~~GsrIIiTTrd~ 334 (1153)
T PLN03210 262 NMKLHLQRAFLSEILDKKD-IKIYH----LGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQ--WFGSGSRIIVITKDK 334 (1153)
T ss_pred chhHHHHHHHHHHHhCCCC-cccCC----HHHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCc--cCCCCcEEEEEeCcH
Confidence 1 12344444444322111 01111 2457788999999999999999989988876555 567899999999999
Q ss_pred hhhhccCCcceEEccCCCHHHHHHHHHHHhCCcccCCCccHHHHHHHHHHHhCCcchHHHHHHhhhccCCCHHHHHHHHH
Q 002538 300 NVCGSMEAHRNFKVECLTEKHAWELFQMKVGEETLKSHPHVFELAQVVAKECGGLPLALITIGRAMAYKKTREEWKYAIE 379 (911)
Q Consensus 300 ~v~~~~~~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~g~~l~~~~~~~~w~~~~~ 379 (911)
+++..++..++|+++.|++++||+||+++||... ..++.+.+++++|+++|+|+|||++++|++|++ ++..+|+.+++
T Consensus 335 ~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~-~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~-k~~~~W~~~l~ 412 (1153)
T PLN03210 335 HFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKN-SPPDGFMELASEVALRAGNLPLGLNVLGSYLRG-RDKEDWMDMLP 412 (1153)
T ss_pred HHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCC-CCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcC-CCHHHHHHHHH
Confidence 9998888889999999999999999999999765 344568999999999999999999999999987 68899999999
Q ss_pred HHHhcccccCCCchhhccccccccCCCChhhhhHHHHHhhcCCCCcccChHHHHHHHHhcCCccCCcccccchhHhHHHH
Q 002538 380 VLRRSTFELAGLEKEVYPLLKFSYDCLPNDIIRSCFLYCCLYPEDWNTFKRNLIDCWIGEGFLEENDRFGAHNQGYYIVG 459 (911)
Q Consensus 380 ~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl~~~~fp~~~~i~~~~li~~w~aeg~i~~~~~~~~~~~~~~~l~ 459 (911)
+++... +.++..+|++||++|+++..|.||+++|.|+.+..++ .+..|++.+.... +..++
T Consensus 413 ~L~~~~------~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~~----------~~~l~ 473 (1153)
T PLN03210 413 RLRNGL------DGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVN---DIKLLLANSDLDV----------NIGLK 473 (1153)
T ss_pred HHHhCc------cHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHH---HHHHHHHhcCCCc----------hhChH
Confidence 987643 3479999999999998756899999999999887553 4677887764432 22388
Q ss_pred HHHHhhcccccCCCceehhHHHHHHHHHHHHhhhh--ccccEEEEcC---------CC-------------cc----cCC
Q 002538 460 TLVHACLLEEVEDDKVKMHDVIRDMALWIASEIEK--EKENILVYAG---------TG-------------LA----VAP 511 (911)
Q Consensus 460 ~L~~~~ll~~~~~~~~~mHdlv~d~a~~i~~~~~~--~~~~~~~~~~---------~~-------------~~----~~~ 511 (911)
.|+++||++.. ..+++|||++|+||+++++++.. .+..+++... .+ .. ...
T Consensus 474 ~L~~ksLi~~~-~~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~ 552 (1153)
T PLN03210 474 NLVDKSLIHVR-EDIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHEN 552 (1153)
T ss_pred HHHhcCCEEEc-CCeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHH
Confidence 99999999886 46799999999999999876421 1112222110 00 00 000
Q ss_pred CCCCcccceEEEe-------------------------------ecCCcccCCCCCCCCCccEEEcccCcccccChhhhc
Q 002538 512 GVEGWEKVKRLLL-------------------------------MKNHIKHLPDIPTCPHLLTLFLSHNQLRWISEDFFQ 560 (911)
Q Consensus 512 ~~~~~~~l~~L~l-------------------------------~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~ 560 (911)
.+.++.+++.|.+ .++.+..+|....+.+|+.|++.+|.+..++.. +.
T Consensus 553 aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~-~~ 631 (1153)
T PLN03210 553 AFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDG-VH 631 (1153)
T ss_pred HHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCccccccccc-cc
Confidence 1223334444444 444444444433445555555555555444433 34
Q ss_pred cCCCCcEEEccCC-CCcccCccccCcCCCCEEeccCC-CcCCcchhhhccCcCcEEecCCCccccccChhhhccCccCcE
Q 002538 561 FMPSLKVLNLSFT-KRHKFPSGISKLASLQLIDLSYT-SIRGLPEELKALINLKCLNLDQTKFLVTIPRHLISSFSMLHV 638 (911)
Q Consensus 561 ~l~~L~~L~L~~~-~~~~lp~~i~~l~~L~~L~L~~~-~i~~lp~~l~~L~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~ 638 (911)
.+++|++|+|+++ .+..+| .++.+++|++|+|++| .+..+|..++++++|+.|++++|..+..+|.. + ++++|+.
T Consensus 632 ~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~-i-~l~sL~~ 708 (1153)
T PLN03210 632 SLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG-I-NLKSLYR 708 (1153)
T ss_pred cCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc-C-CCCCCCE
Confidence 4555555555554 244444 3555555666666554 34445555566666666666655555555553 2 5555666
Q ss_pred EEecCCCCCcccccCCCcccccCcccchhhhcCCCCCcEEEEEecCchhhHhhhhc------------------------
Q 002538 639 LRMFGSGSSVFHEASGDSILFDGGELLADELLGLKYLEVLDITLRSRHALQSVLSS------------------------ 694 (911)
Q Consensus 639 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~------------------------ 694 (911)
|++++|... ...+. ...+|+.|++..+....++.....
T Consensus 709 L~Lsgc~~L---------------~~~p~---~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~ 770 (1153)
T PLN03210 709 LNLSGCSRL---------------KSFPD---ISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLT 770 (1153)
T ss_pred EeCCCCCCc---------------ccccc---ccCCcCeeecCCCccccccccccccccccccccccchhhccccccccc
Confidence 665555422 00000 123344444443333222211100
Q ss_pred ---ccccCcceEEEeeeccCCCceeecccccccccceEeeccccccceeEecccCccccccccccCCccCEEEEecCCCC
Q 002538 695 ---HKLRSCTQAIFLQCFKDSKSIYAAALADLKHLKKLCISQCEELEELKIDCTGEVKRMCQPYIFRSLNKVQIYSCPVL 771 (911)
Q Consensus 695 ---~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l 771 (911)
.....+|+.|+++++.....++. .++++++|+.|+|++|..++.++... .+++|+.|+|++|.++
T Consensus 771 ~~~~~~~~sL~~L~Ls~n~~l~~lP~-si~~L~~L~~L~Ls~C~~L~~LP~~~-----------~L~sL~~L~Ls~c~~L 838 (1153)
T PLN03210 771 PLMTMLSPSLTRLFLSDIPSLVELPS-SIQNLHKLEHLEIENCINLETLPTGI-----------NLESLESLDLSGCSRL 838 (1153)
T ss_pred hhhhhccccchheeCCCCCCccccCh-hhhCCCCCCEEECCCCCCcCeeCCCC-----------CccccCEEECCCCCcc
Confidence 00112344444444433333321 34444444444444444444321111 1344444444444444
Q ss_pred CCCcccccCCCcceEeEecccccccccccCcchhhhhhcCCCCcccccceeccccccccccccCCcccCCccceEecccc
Q 002538 772 KDLTFLVFAPNLKSIDVRSCSVMKEIVSAGKSADIAEMMGNMSPFAKLQNLQLVRLQNLKSIYWKLVPFPHLKEIIVHQC 851 (911)
Q Consensus 772 ~~l~~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~~~~~~~~~p~L~~L~i~~C 851 (911)
..+|.+ .++|+.|+|++ +.++.+ +..+..+++|+.|+|.+|++|+.++.....+++|+.+.+++|
T Consensus 839 ~~~p~~--~~nL~~L~Ls~-n~i~~i------------P~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C 903 (1153)
T PLN03210 839 RTFPDI--STNISDLNLSR-TGIEEV------------PWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDC 903 (1153)
T ss_pred cccccc--ccccCEeECCC-CCCccC------------hHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCC
Confidence 443321 23444444444 223333 335677999999999999999999988888999999999999
Q ss_pred ccccCCCCC
Q 002538 852 NWLKKLPLD 860 (911)
Q Consensus 852 ~~L~~lP~~ 860 (911)
++|+.++..
T Consensus 904 ~~L~~~~l~ 912 (1153)
T PLN03210 904 GALTEASWN 912 (1153)
T ss_pred cccccccCC
Confidence 999977653
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=3.1e-45 Score=392.80 Aligned_cols=280 Identities=34% Similarity=0.632 Sum_probs=233.6
Q ss_pred hHHHHHHHHHHhcc--CCceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCccChHHHHHHHHHHcCCCCC
Q 002538 161 LESTLEDVWRCLVE--ESAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDLQIEKNQEIIGKKIGLFDD 238 (911)
Q Consensus 161 r~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~ 238 (911)
||+++++|.++|.+ ++.++|+|+||||+||||||++++++. .++.+|+.++|+.++...+...++..|+.+++....
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~-~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~ 79 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDL-RIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDS 79 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHH-HHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-S
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeeccccc-cccccccccccccccccccccccccccccccccccc
Confidence 78999999999998 789999999999999999999999996 468999999999999999999999999999988754
Q ss_pred cc-CCCCHHHHHHHHHHHhhcceEEEEEcccccccccccccCCCCCCCCCCCcEEEEEcCchhhhhccCC-cceEEccCC
Q 002538 239 SW-KNKNLDERALEIFKILREKKFVLLLDDIWERVNLNKVGVPLPSPQSTTASKVVFTTRFINVCGSMEA-HRNFKVECL 316 (911)
Q Consensus 239 ~~-~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~~~~~~~~~l~~~~~~~gs~IivTtR~~~v~~~~~~-~~~~~l~~L 316 (911)
.. ...+.++....+.+.|+++++||||||||+...|+++...++ ....|++||||||+..++..++. ...|++++|
T Consensus 80 ~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~--~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L 157 (287)
T PF00931_consen 80 SISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLP--SFSSGSKILVTTRDRSVAGSLGGTDKVIELEPL 157 (287)
T ss_dssp TSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------H--CHHSS-EEEEEESCGGGGTTHHSCEEEEECSS-
T ss_pred ccccccccccccccchhhhccccceeeeeeecccccccccccccc--ccccccccccccccccccccccccccccccccc
Confidence 43 566788899999999999999999999999999999888877 66779999999999999877655 678999999
Q ss_pred CHHHHHHHHHHHhCCcccCCCccHHHHHHHHHHHhCCcchHHHHHHhhhccCCCHHHHHHHHHHHHhcccccCCCchhhc
Q 002538 317 TEKHAWELFQMKVGEETLKSHPHVFELAQVVAKECGGLPLALITIGRAMAYKKTREEWKYAIEVLRRSTFELAGLEKEVY 396 (911)
Q Consensus 317 ~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~g~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~i~ 396 (911)
+.+||++||++.++.......+.+++.+++|+++|+|+||||+++|++|+.+.+..+|+.+++.+........+....++
T Consensus 158 ~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~ 237 (287)
T PF00931_consen 158 SEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVF 237 (287)
T ss_dssp -HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999998655234456678999999999999999999999997666788999999888877654444557899
Q ss_pred cccccccCCCChhhhhHHHHHhhcCCCCcccChHHHHHHHHhcCCccC
Q 002538 397 PLLKFSYDCLPNDIIRSCFLYCCLYPEDWNTFKRNLIDCWIGEGFLEE 444 (911)
Q Consensus 397 ~~l~~sy~~L~~~~~k~cfl~~~~fp~~~~i~~~~li~~w~aeg~i~~ 444 (911)
.++.+||+.||+ ++|.||+|||+||+++.|+++.|+++|++||||..
T Consensus 238 ~~l~~s~~~L~~-~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~ 284 (287)
T PF00931_consen 238 SALELSYDSLPD-ELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISS 284 (287)
T ss_dssp HHHHHHHHSSHT-CCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC-
T ss_pred ccceechhcCCc-cHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCcc
Confidence 999999999999 89999999999999999999999999999999976
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.87 E-value=1.4e-21 Score=245.54 Aligned_cols=328 Identities=19% Similarity=0.155 Sum_probs=190.0
Q ss_pred CcccceEEEeecCCcccCCCCCCCCCccEEEcccCcccccChhhhccCCCCcEEEccCCCCc-ccCccccCcCCCCEEec
Q 002538 515 GWEKVKRLLLMKNHIKHLPDIPTCPHLLTLFLSHNQLRWISEDFFQFMPSLKVLNLSFTKRH-KFPSGISKLASLQLIDL 593 (911)
Q Consensus 515 ~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~-~lp~~i~~l~~L~~L~L 593 (911)
.++++++|++++|.+........+++|++|++++|.+....+..+..+++|++|++++|.+. .+|..++++++|++|++
T Consensus 116 ~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 195 (968)
T PLN00113 116 TSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTL 195 (968)
T ss_pred cCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeec
Confidence 45567777777666654333345667777777777665444445667777777777777654 55667777777777777
Q ss_pred cCCCcCC-cchhhhccCcCcEEecCCCccccccChhhhccCccCcEEEecCCCCCcccccCCCcccccCcccchhhhcCC
Q 002538 594 SYTSIRG-LPEELKALINLKCLNLDQTKFLVTIPRHLISSFSMLHVLRMFGSGSSVFHEASGDSILFDGGELLADELLGL 672 (911)
Q Consensus 594 ~~~~i~~-lp~~l~~L~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L 672 (911)
++|.+.. +|..++++++|++|++++|.....+|.. ++++++|++|++.+|... +..+..++.+
T Consensus 196 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~---------------~~~p~~l~~l 259 (968)
T PLN00113 196 ASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYE-IGGLTSLNHLDLVYNNLT---------------GPIPSSLGNL 259 (968)
T ss_pred cCCCCcCcCChHHcCcCCccEEECcCCccCCcCChh-HhcCCCCCEEECcCceec---------------cccChhHhCC
Confidence 7776654 6777777777777777777655566655 677777777777766543 3455667777
Q ss_pred CCCcEEEEEecCchh-hHhhhhcccccCcceEEEeeeccCCCceeecccccccccceEeeccccccceeEecccCccccc
Q 002538 673 KYLEVLDITLRSRHA-LQSVLSSHKLRSCTQAIFLQCFKDSKSIYAAALADLKHLKKLCISQCEELEELKIDCTGEVKRM 751 (911)
Q Consensus 673 ~~L~~L~l~~~~~~~-~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~ 751 (911)
++|+.|+++.+.... ++.. .....+|+.|+++++.....++ ..+..+++|+.|++++|.....+ +...
T Consensus 260 ~~L~~L~L~~n~l~~~~p~~---l~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~l~~n~~~~~~-~~~~------ 328 (968)
T PLN00113 260 KNLQYLFLYQNKLSGPIPPS---IFSLQKLISLDLSDNSLSGEIP-ELVIQLQNLEILHLFSNNFTGKI-PVAL------ 328 (968)
T ss_pred CCCCEEECcCCeeeccCchh---HhhccCcCEEECcCCeeccCCC-hhHcCCCCCcEEECCCCccCCcC-ChhH------
Confidence 777777776554431 1111 1123466777776654332322 24556677777777766443322 1221
Q ss_pred cccccCCccCEEEEecCCCCCCCcc-cccCCCcceEeEecccccccccccCcc-h----------hh-hhhcCCCCcccc
Q 002538 752 CQPYIFRSLNKVQIYSCPVLKDLTF-LVFAPNLKSIDVRSCSVMKEIVSAGKS-A----------DI-AEMMGNMSPFAK 818 (911)
Q Consensus 752 ~~~~~~~~L~~L~L~~c~~l~~l~~-l~~l~~L~~L~L~~c~~l~~i~~~~~~-~----------~~-~~~~~~~~~~p~ 818 (911)
..+++|+.|++++|.....+|. ++.+++|+.|++++|.....++..-.. . .. ...+..+..+++
T Consensus 329 ---~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~ 405 (968)
T PLN00113 329 ---TSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRS 405 (968)
T ss_pred ---hcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCC
Confidence 2367777777777754434443 566777777777765433222210000 0 00 011223455677
Q ss_pred cceeccccccccccccCCcccCCccceEeccccccccCCCCCCCCCCCcceEEEe
Q 002538 819 LQNLQLVRLQNLKSIYWKLVPFPHLKEIIVHQCNWLKKLPLDSNSAKEHKIVIHG 873 (911)
Q Consensus 819 L~~L~L~~~~~L~~~~~~~~~~p~L~~L~i~~C~~L~~lP~~~~~~~~~l~~~~~ 873 (911)
|+.|++.+|.--..++..+..+++|+.|++++|.--..+|..... +++|..++.
T Consensus 406 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~L~L 459 (968)
T PLN00113 406 LRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWD-MPSLQMLSL 459 (968)
T ss_pred CCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhcc-CCCCcEEEC
Confidence 777777776544455555666777888888776433334432222 344554443
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.86 E-value=3e-21 Score=242.42 Aligned_cols=318 Identities=22% Similarity=0.250 Sum_probs=217.1
Q ss_pred CCCCCcccceEEEeecCCcc-cCCC--CCCCCCccEEEcccCcccccChhhhccCCCCcEEEccCCCCc-ccCccccCcC
Q 002538 511 PGVEGWEKVKRLLLMKNHIK-HLPD--IPTCPHLLTLFLSHNQLRWISEDFFQFMPSLKVLNLSFTKRH-KFPSGISKLA 586 (911)
Q Consensus 511 ~~~~~~~~l~~L~l~~~~~~-~l~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~-~lp~~i~~l~ 586 (911)
+.+..+++++.|++++|.+. .+|. +..+++|++|++++|.+.+..+. ..+++|++|+|++|.+. .+|..+++++
T Consensus 87 ~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~ 164 (968)
T PLN00113 87 SAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFS 164 (968)
T ss_pred hHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCC
Confidence 34556778888888888776 4554 34788888888888877654332 45788888888888776 5688888888
Q ss_pred CCCEEeccCCCcCC-cchhhhccCcCcEEecCCCccccccChhhhccCccCcEEEecCCCCCcccccCCCcccccCcccc
Q 002538 587 SLQLIDLSYTSIRG-LPEELKALINLKCLNLDQTKFLVTIPRHLISSFSMLHVLRMFGSGSSVFHEASGDSILFDGGELL 665 (911)
Q Consensus 587 ~L~~L~L~~~~i~~-lp~~l~~L~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 665 (911)
+|++|++++|.+.. +|..++++++|++|++++|.....+|.. ++++++|++|++.+|... ...
T Consensus 165 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~---------------~~~ 228 (968)
T PLN00113 165 SLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRE-LGQMKSLKWIYLGYNNLS---------------GEI 228 (968)
T ss_pred CCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChH-HcCcCCccEEECcCCccC---------------CcC
Confidence 99999998888764 8888888889999999888766677766 788888999988888764 456
Q ss_pred hhhhcCCCCCcEEEEEecCchh-hHhhhhcccccCcceEEEeeeccCCCceeecccccccccceEeeccccccceeEecc
Q 002538 666 ADELLGLKYLEVLDITLRSRHA-LQSVLSSHKLRSCTQAIFLQCFKDSKSIYAAALADLKHLKKLCISQCEELEELKIDC 744 (911)
Q Consensus 666 ~~~l~~L~~L~~L~l~~~~~~~-~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~ 744 (911)
+..++.+++|+.|+++.+.... ++. .....++|+.|+++++......+ ..+..+++|++|++++|..... .+.+
T Consensus 229 p~~l~~l~~L~~L~L~~n~l~~~~p~---~l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~Ls~n~l~~~-~p~~ 303 (968)
T PLN00113 229 PYEIGGLTSLNHLDLVYNNLTGPIPS---SLGNLKNLQYLFLYQNKLSGPIP-PSIFSLQKLISLDLSDNSLSGE-IPEL 303 (968)
T ss_pred ChhHhcCCCCCEEECcCceeccccCh---hHhCCCCCCEEECcCCeeeccCc-hhHhhccCcCEEECcCCeeccC-CChh
Confidence 7778889999999998776542 222 22234578888888765433333 3567788999999988753332 2233
Q ss_pred cCccccccccccCCccCEEEEecCCCCCCCc-ccccCCCcceEeEecccccccccccCcchhhhhhcCCCCcccccceec
Q 002538 745 TGEVKRMCQPYIFRSLNKVQIYSCPVLKDLT-FLVFAPNLKSIDVRSCSVMKEIVSAGKSADIAEMMGNMSPFAKLQNLQ 823 (911)
Q Consensus 745 ~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~p~L~~L~ 823 (911)
. ..+++|+.|++++|.....+| .+..+++|+.|++++|.....++. .+..+++|+.|+
T Consensus 304 ~---------~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~------------~l~~~~~L~~L~ 362 (968)
T PLN00113 304 V---------IQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPK------------NLGKHNNLTVLD 362 (968)
T ss_pred H---------cCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCCh------------HHhCCCCCcEEE
Confidence 2 247899999999986554454 378899999999999765444432 233445555555
Q ss_pred cccc------------------------cccccccCCcccCCccceEeccccccccCCCCCCCCCCCcceEEEe
Q 002538 824 LVRL------------------------QNLKSIYWKLVPFPHLKEIIVHQCNWLKKLPLDSNSAKEHKIVIHG 873 (911)
Q Consensus 824 L~~~------------------------~~L~~~~~~~~~~p~L~~L~i~~C~~L~~lP~~~~~~~~~l~~~~~ 873 (911)
++++ +-...++..+..+++|+.|.+.+|+--..+|..... ++.|...+.
T Consensus 363 Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~-l~~L~~L~L 435 (968)
T PLN00113 363 LSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTK-LPLVYFLDI 435 (968)
T ss_pred CCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhc-CCCCCEEEC
Confidence 5443 322233334455677777777776544445543322 444554443
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.85 E-value=9e-24 Score=224.54 Aligned_cols=325 Identities=20% Similarity=0.284 Sum_probs=207.3
Q ss_pred cEEEEcCCCccc-CCCCCCcccceEEEeecCCcccCCC-CCCCCCccEEEcccCccc--ccChhhhccCCCCcEEEccCC
Q 002538 498 NILVYAGTGLAV-APGVEGWEKVKRLLLMKNHIKHLPD-IPTCPHLLTLFLSHNQLR--WISEDFFQFMPSLKVLNLSFT 573 (911)
Q Consensus 498 ~~~~~~~~~~~~-~~~~~~~~~l~~L~l~~~~~~~l~~-~~~~~~L~~L~l~~~~l~--~~~~~~~~~l~~L~~L~L~~~ 573 (911)
.++.....++.. |.....+.++.+|++.+|++..+.+ ++.++.||++.+..|+++ ++|++.|. +..|.+||||+|
T Consensus 35 ~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~-l~dLt~lDLShN 113 (1255)
T KOG0444|consen 35 TWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFR-LKDLTILDLSHN 113 (1255)
T ss_pred eEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhcc-cccceeeecchh
Confidence 344444444332 3345566788888888888776654 788888888888888654 67777654 888888889888
Q ss_pred CCcccCccccCcCCCCEEeccCCCcCCcchhh-hccCcCcEEecCCCccccccChhhhccCccCcEEEecCCCCCccccc
Q 002538 574 KRHKFPSGISKLASLQLIDLSYTSIRGLPEEL-KALINLKCLNLDQTKFLVTIPRHLISSFSMLHVLRMFGSGSSVFHEA 652 (911)
Q Consensus 574 ~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~l-~~L~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~ 652 (911)
++...|..+.+-+++-+|+||+|+|.++|..+ -+|+-|-.|||++|. +..+|+. +.+|.+|++|.+++|...
T Consensus 114 qL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~Nr-Le~LPPQ-~RRL~~LqtL~Ls~NPL~----- 186 (1255)
T KOG0444|consen 114 QLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNR-LEMLPPQ-IRRLSMLQTLKLSNNPLN----- 186 (1255)
T ss_pred hhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccch-hhhcCHH-HHHHhhhhhhhcCCChhh-----
Confidence 88888888888888888888888888888764 578888888888886 7888887 788888888888888764
Q ss_pred CCCcccccCcccchhhhcCCCCCcEEEEEecCchhhHhhhhcccccCcceEEEeeeccCCCceeecccccccccceEeec
Q 002538 653 SGDSILFDGGELLADELLGLKYLEVLDITLRSRHALQSVLSSHKLRSCTQAIFLQCFKDSKSIYAAALADLKHLKKLCIS 732 (911)
Q Consensus 653 ~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~ 732 (911)
-.-+..|-++++|.+|++++.. ..+.+++.+.....+|..++++.+ ++..+| ..+-++++|+.|+++
T Consensus 187 ----------hfQLrQLPsmtsL~vLhms~Tq-RTl~N~Ptsld~l~NL~dvDlS~N-~Lp~vP-ecly~l~~LrrLNLS 253 (1255)
T KOG0444|consen 187 ----------HFQLRQLPSMTSLSVLHMSNTQ-RTLDNIPTSLDDLHNLRDVDLSEN-NLPIVP-ECLYKLRNLRRLNLS 253 (1255)
T ss_pred ----------HHHHhcCccchhhhhhhccccc-chhhcCCCchhhhhhhhhcccccc-CCCcch-HHHhhhhhhheeccC
Confidence 2233445555666666665332 222333333333445566666543 233333 245566777777777
Q ss_pred cccccceeEecccCccccccccccCCccCEEEEecCCCCCCCcc-cccCCCcceEeEecccccc--cccccC--------
Q 002538 733 QCEELEELKIDCTGEVKRMCQPYIFRSLNKVQIYSCPVLKDLTF-LVFAPNLKSIDVRSCSVMK--EIVSAG-------- 801 (911)
Q Consensus 733 ~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~~-l~~l~~L~~L~L~~c~~l~--~i~~~~-------- 801 (911)
++. ++.+.... ....+|++|+++.+ .++.+|. +..|+.|+.|.+.++. +. .||...
T Consensus 254 ~N~-iteL~~~~----------~~W~~lEtLNlSrN-QLt~LP~avcKL~kL~kLy~n~Nk-L~FeGiPSGIGKL~~Lev 320 (1255)
T KOG0444|consen 254 GNK-ITELNMTE----------GEWENLETLNLSRN-QLTVLPDAVCKLTKLTKLYANNNK-LTFEGIPSGIGKLIQLEV 320 (1255)
T ss_pred cCc-eeeeeccH----------HHHhhhhhhccccc-hhccchHHHhhhHHHHHHHhccCc-ccccCCccchhhhhhhHH
Confidence 763 33332211 12456666666666 5555554 5566666666655432 21 111100
Q ss_pred ---cchhhhhhcCCCCcccccceeccccccccccccCCcccCCccceEeccccccccCC
Q 002538 802 ---KSADIAEMMGNMSPFAKLQNLQLVRLQNLKSIYWKLVPFPHLKEIIVHQCNWLKKL 857 (911)
Q Consensus 802 ---~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~~~~~~~~~p~L~~L~i~~C~~L~~l 857 (911)
.+..+.-.+..+..|++|+.|.|.. ..|..+|.++.-+|.|+.|+++..|+|..-
T Consensus 321 f~aanN~LElVPEglcRC~kL~kL~L~~-NrLiTLPeaIHlL~~l~vLDlreNpnLVMP 378 (1255)
T KOG0444|consen 321 FHAANNKLELVPEGLCRCVKLQKLKLDH-NRLITLPEAIHLLPDLKVLDLRENPNLVMP 378 (1255)
T ss_pred HHhhccccccCchhhhhhHHHHHhcccc-cceeechhhhhhcCCcceeeccCCcCccCC
Confidence 0001112233566777777777754 567777777777778888888877777743
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.84 E-value=5.9e-22 Score=209.87 Aligned_cols=351 Identities=17% Similarity=0.219 Sum_probs=173.6
Q ss_pred cccceEEEeecCCcccCCCCCCCC-CccEEEcccCcccccChhhhccCCCCcEEEccCCCCcccCc-cccCcCCCCEEec
Q 002538 516 WEKVKRLLLMKNHIKHLPDIPTCP-HLLTLFLSHNQLRWISEDFFQFMPSLKVLNLSFTKRHKFPS-GISKLASLQLIDL 593 (911)
Q Consensus 516 ~~~l~~L~l~~~~~~~l~~~~~~~-~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~lp~-~i~~l~~L~~L~L 593 (911)
+.+++.+++..|.+..+|.+.... +|+.|+|.+|.++.+....++.++.||.||||.|.++.+|. ++..-.++++|+|
T Consensus 101 l~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~L 180 (873)
T KOG4194|consen 101 LPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNL 180 (873)
T ss_pred CCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEee
Confidence 344444444444444444433322 24455555554444444444444555555555554444431 2333344555555
Q ss_pred cCCCcCCcc-hhhhccCcCcEEecCCCccccccChhhhccCccCcEEEecCCCCCcccccCCCccc--------c-cCcc
Q 002538 594 SYTSIRGLP-EELKALINLKCLNLDQTKFLVTIPRHLISSFSMLHVLRMFGSGSSVFHEASGDSIL--------F-DGGE 663 (911)
Q Consensus 594 ~~~~i~~lp-~~l~~L~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~--------~-~~~~ 663 (911)
++|+|+.+- ..|..+.+|..|.|+.|. +..+|...|++|++|+.|++..|.+.+.....+.+.. . +-..
T Consensus 181 a~N~It~l~~~~F~~lnsL~tlkLsrNr-ittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~k 259 (873)
T KOG4194|consen 181 ASNRITTLETGHFDSLNSLLTLKLSRNR-ITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISK 259 (873)
T ss_pred ccccccccccccccccchheeeecccCc-ccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCccc
Confidence 555444432 224444444555554444 3444444444455555555544443311111100000 0 0001
Q ss_pred cchhhhcCCCCCcEEEEEecCchhhHh-hhhcccccCcceEEEeeeccCCCceeecccccccccceEeeccccccceeEe
Q 002538 664 LLADELLGLKYLEVLDITLRSRHALQS-VLSSHKLRSCTQAIFLQCFKDSKSIYAAALADLKHLKKLCISQCEELEELKI 742 (911)
Q Consensus 664 ~~~~~l~~L~~L~~L~l~~~~~~~~~~-~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~ 742 (911)
..-+.+-.|.++++|++..|....+.. ++. ..+.|+.|+++++. +..+...+++.+++|+.|+++.+ .++.++.
T Consensus 260 L~DG~Fy~l~kme~l~L~~N~l~~vn~g~lf---gLt~L~~L~lS~Na-I~rih~d~WsftqkL~~LdLs~N-~i~~l~~ 334 (873)
T KOG4194|consen 260 LDDGAFYGLEKMEHLNLETNRLQAVNEGWLF---GLTSLEQLDLSYNA-IQRIHIDSWSFTQKLKELDLSSN-RITRLDE 334 (873)
T ss_pred ccCcceeeecccceeecccchhhhhhccccc---ccchhhhhccchhh-hheeecchhhhcccceeEecccc-ccccCCh
Confidence 122334556666666666555443322 111 12455556665432 34444445566666777776654 3444444
Q ss_pred cccCccccccccccCCccCEEEEecCCCCCCCcc--cccCCCcceEeEecccccccccccCcchhhhhhcCCCCcccccc
Q 002538 743 DCTGEVKRMCQPYIFRSLNKVQIYSCPVLKDLTF--LVFAPNLKSIDVRSCSVMKEIVSAGKSADIAEMMGNMSPFAKLQ 820 (911)
Q Consensus 743 ~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~~--l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~p~L~ 820 (911)
..+. .+..|+.|.|+++ ++..+.. +..+.+|++|+|+++. +.-.+.. -...+.++|+|+
T Consensus 335 ~sf~---------~L~~Le~LnLs~N-si~~l~e~af~~lssL~~LdLr~N~-ls~~IED--------aa~~f~gl~~Lr 395 (873)
T KOG4194|consen 335 GSFR---------VLSQLEELNLSHN-SIDHLAEGAFVGLSSLHKLDLRSNE-LSWCIED--------AAVAFNGLPSLR 395 (873)
T ss_pred hHHH---------HHHHhhhhccccc-chHHHHhhHHHHhhhhhhhcCcCCe-EEEEEec--------chhhhccchhhh
Confidence 3332 2566677777666 4454432 4567788888877743 3332221 112566789999
Q ss_pred eeccccccccccccC-CcccCCccceEeccccccccCCCCCCCCCCCcceEEEec-cc-ccc-ccccCCccccccccc
Q 002538 821 NLQLVRLQNLKSIYW-KLVPFPHLKEIIVHQCNWLKKLPLDSNSAKEHKIVIHGE-EC-WWN-KLQWENDATKNAFFS 894 (911)
Q Consensus 821 ~L~L~~~~~L~~~~~-~~~~~p~L~~L~i~~C~~L~~lP~~~~~~~~~l~~~~~~-~~-~~~-~l~w~~~~~~~~~~~ 894 (911)
+|.+.+ .++++++. .+..++.||+|++.+. -+.++-......+ +|+....+ .. ..+ ++.|-.++++..+.+
T Consensus 396 kL~l~g-Nqlk~I~krAfsgl~~LE~LdL~~N-aiaSIq~nAFe~m-~Lk~Lv~nSssflCDCql~Wl~qWl~~~~lq 470 (873)
T KOG4194|consen 396 KLRLTG-NQLKSIPKRAFSGLEALEHLDLGDN-AIASIQPNAFEPM-ELKELVMNSSSFLCDCQLKWLAQWLYRRKLQ 470 (873)
T ss_pred heeecC-ceeeecchhhhccCcccceecCCCC-cceeecccccccc-hhhhhhhcccceEEeccHHHHHHHHHhcccc
Confidence 999988 57888875 5667899999999874 4666555544433 34332221 11 111 266666666655544
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.84 E-value=3.2e-22 Score=211.92 Aligned_cols=315 Identities=21% Similarity=0.280 Sum_probs=216.4
Q ss_pred cccCCCCCC-cccceEEEeecCCcccCCC--CCCCCCccEEEcccCcccccChhhhccCCCCcEEEccCCCCccc-Cccc
Q 002538 507 LAVAPGVEG-WEKVKRLLLMKNHIKHLPD--IPTCPHLLTLFLSHNQLRWISEDFFQFMPSLKVLNLSFTKRHKF-PSGI 582 (911)
Q Consensus 507 ~~~~~~~~~-~~~l~~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~l-p~~i 582 (911)
++.+|.+.. ..++..|++.+|.|.++.. +..++.||+|+|+.|.+..++...|+.=.++++|+|++|.|+.+ -..|
T Consensus 114 Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F 193 (873)
T KOG4194|consen 114 LTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHF 193 (873)
T ss_pred hhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccc
Confidence 334444443 3468888888888877643 67778888888888888888777777777888888888888877 4567
Q ss_pred cCcCCCCEEeccCCCcCCcchh-hhccCcCcEEecCCCccccccChhhhccCccCcEEEecCCCCCcccccCCCc-----
Q 002538 583 SKLASLQLIDLSYTSIRGLPEE-LKALINLKCLNLDQTKFLVTIPRHLISSFSMLHVLRMFGSGSSVFHEASGDS----- 656 (911)
Q Consensus 583 ~~l~~L~~L~L~~~~i~~lp~~-l~~L~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~----- 656 (911)
..+.+|-+|.|+.|+++.+|.- |.+|++|+.|+|..|. +..+..-.|.+|++|+.|.+..|.+....+--+.+
T Consensus 194 ~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~-irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme 272 (873)
T KOG4194|consen 194 DSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNR-IRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKME 272 (873)
T ss_pred cccchheeeecccCcccccCHHHhhhcchhhhhhccccc-eeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccc
Confidence 7777888888888888887754 5558888888888776 44443333667777777777666554111100000
Q ss_pred ---cccc-CcccchhhhcCCCCCcEEEEEecCchhhHhhhhcccccCcceEEEeeeccCCCceeecccccccccceEeec
Q 002538 657 ---ILFD-GGELLADELLGLKYLEVLDITLRSRHALQSVLSSHKLRSCTQAIFLQCFKDSKSIYAAALADLKHLKKLCIS 732 (911)
Q Consensus 657 ---~~~~-~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~ 732 (911)
...+ -....-+.+-+|+.|+.|++++|.+..+. ....++...|+.|+|+++ .++.++..++..+..|++|.++
T Consensus 273 ~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih--~d~WsftqkL~~LdLs~N-~i~~l~~~sf~~L~~Le~LnLs 349 (873)
T KOG4194|consen 273 HLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIH--IDSWSFTQKLKELDLSSN-RITRLDEGSFRVLSQLEELNLS 349 (873)
T ss_pred eeecccchhhhhhcccccccchhhhhccchhhhheee--cchhhhcccceeEecccc-ccccCChhHHHHHHHhhhhccc
Confidence 0000 01223345778999999999988876543 344566778999999875 4677777789999999999999
Q ss_pred cccccceeEecccCccccccccccCCccCEEEEecCCC---CCCC-cccccCCCcceEeEecccccccccccCcchhhhh
Q 002538 733 QCEELEELKIDCTGEVKRMCQPYIFRSLNKVQIYSCPV---LKDL-TFLVFAPNLKSIDVRSCSVMKEIVSAGKSADIAE 808 (911)
Q Consensus 733 ~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~---l~~l-~~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~ 808 (911)
.++ +..+....+ ..+.+|++|+|+++.. +++- ..+.+|++|+.|++.| +.++.|+.
T Consensus 350 ~Ns-i~~l~e~af---------~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~g-Nqlk~I~k--------- 409 (873)
T KOG4194|consen 350 HNS-IDHLAEGAF---------VGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTG-NQLKSIPK--------- 409 (873)
T ss_pred ccc-hHHHHhhHH---------HHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecC-ceeeecch---------
Confidence 873 333322222 2378999999988732 1221 1256799999999999 67898876
Q ss_pred hcCCCCcccccceeccccccccccccC-CcccCCccceEecc
Q 002538 809 MMGNMSPFAKLQNLQLVRLQNLKSIYW-KLVPFPHLKEIIVH 849 (911)
Q Consensus 809 ~~~~~~~~p~L~~L~L~~~~~L~~~~~-~~~~~p~L~~L~i~ 849 (911)
.++.+|++|+.|+|.+.+ +.++.. .+..+ .|++|.+.
T Consensus 410 --rAfsgl~~LE~LdL~~Na-iaSIq~nAFe~m-~Lk~Lv~n 447 (873)
T KOG4194|consen 410 --RAFSGLEALEHLDLGDNA-IASIQPNAFEPM-ELKELVMN 447 (873)
T ss_pred --hhhccCcccceecCCCCc-ceeecccccccc-hhhhhhhc
Confidence 378889999999998854 555543 34444 66666654
No 9
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.83 E-value=7.6e-20 Score=229.44 Aligned_cols=362 Identities=18% Similarity=0.243 Sum_probs=166.5
Q ss_pred HHHHHHHHHHHhhhhccccEEEEcCCCcccC---------CCCCCcccceEEEeecCCcccCC----CCCCCCCccEEEc
Q 002538 480 VIRDMALWIASEIEKEKENILVYAGTGLAVA---------PGVEGWEKVKRLLLMKNHIKHLP----DIPTCPHLLTLFL 546 (911)
Q Consensus 480 lv~d~a~~i~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~l~~L~l~~~~~~~l~----~~~~~~~L~~L~l 546 (911)
-|||+.+..+++...+... ..+...-.+ ....+..+++.+++....+..+. .+..+++|+.|.+
T Consensus 489 ~MHdLl~~~~r~i~~~~~~---~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~ 565 (1153)
T PLN03210 489 EMHSLLQEMGKEIVRAQSN---EPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKF 565 (1153)
T ss_pred EhhhHHHHHHHHHHHhhcC---CCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEE
Confidence 3789999988875433211 111111111 11233456777776655444321 2566677777766
Q ss_pred ccCcc------c-ccChhhhccC-CCCcEEEccCCCCcccCccccCcCCCCEEeccCCCcCCcchhhhccCcCcEEecCC
Q 002538 547 SHNQL------R-WISEDFFQFM-PSLKVLNLSFTKRHKFPSGISKLASLQLIDLSYTSIRGLPEELKALINLKCLNLDQ 618 (911)
Q Consensus 547 ~~~~l------~-~~~~~~~~~l-~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~l~~L~~L~~L~L~~ 618 (911)
..+.. . .+|.. |..+ .+|+.|++.++.+..+|..+ .+.+|+.|+++++++..+|.++..+++|+.|++++
T Consensus 566 ~~~~~~~~~~~~~~lp~~-~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~ 643 (1153)
T PLN03210 566 YTKKWDQKKEVRWHLPEG-FDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRG 643 (1153)
T ss_pred ecccccccccceeecCcc-hhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccccccccccCCCCCEEECCC
Confidence 54321 0 12222 2222 34555665555555555554 34555555555555555555555555555555555
Q ss_pred CccccccChhhhccCccCcEEEecCCCCCcccccCCCcccccCcccchhhhcCCCCCcEEEEEecC-chhhHhhhhcccc
Q 002538 619 TKFLVTIPRHLISSFSMLHVLRMFGSGSSVFHEASGDSILFDGGELLADELLGLKYLEVLDITLRS-RHALQSVLSSHKL 697 (911)
Q Consensus 619 ~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~-~~~~~~~~~~~~~ 697 (911)
|..+..+|. ++.+++|+.|++.+|... ...+..++.+++|+.|+++.+. ...++. .. .
T Consensus 644 ~~~l~~ip~--ls~l~~Le~L~L~~c~~L---------------~~lp~si~~L~~L~~L~L~~c~~L~~Lp~---~i-~ 702 (1153)
T PLN03210 644 SKNLKEIPD--LSMATNLETLKLSDCSSL---------------VELPSSIQYLNKLEDLDMSRCENLEILPT---GI-N 702 (1153)
T ss_pred CCCcCcCCc--cccCCcccEEEecCCCCc---------------cccchhhhccCCCCEEeCCCCCCcCccCC---cC-C
Confidence 544555553 455555555555555432 2233444455555555554321 111111 10 1
Q ss_pred cCcceEEEeeeccCCCceeec------------------ccccccccceEeeccccccceeEecccCccccccccccCCc
Q 002538 698 RSCTQAIFLQCFKDSKSIYAA------------------ALADLKHLKKLCISQCEELEELKIDCTGEVKRMCQPYIFRS 759 (911)
Q Consensus 698 ~~~l~~L~l~~~~~~~~~~~~------------------~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 759 (911)
.++|+.|.+++|.....++.. ....+++|.+|.+.++.... +....... .+.....+++
T Consensus 703 l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~-l~~~~~~l--~~~~~~~~~s 779 (1153)
T PLN03210 703 LKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEK-LWERVQPL--TPLMTMLSPS 779 (1153)
T ss_pred CCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccccccccccccccccchhh-cccccccc--chhhhhcccc
Confidence 234444444444332222110 00012333333333221100 00000000 0000012345
Q ss_pred cCEEEEecCCCCCCCcc-cccCCCcceEeEecccccccccccCcchhhhh--------hcCCCCcccccceecccccccc
Q 002538 760 LNKVQIYSCPVLKDLTF-LVFAPNLKSIDVRSCSVMKEIVSAGKSADIAE--------MMGNMSPFAKLQNLQLVRLQNL 830 (911)
Q Consensus 760 L~~L~L~~c~~l~~l~~-l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~--------~~~~~~~~p~L~~L~L~~~~~L 830 (911)
|+.|+|++|+.+..+|. ++++++|+.|+|++|+.++.+|.......+.. +.......++|+.|+|.+ ..+
T Consensus 780 L~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~-n~i 858 (1153)
T PLN03210 780 LTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSR-TGI 858 (1153)
T ss_pred chheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccccccccCEeECCC-CCC
Confidence 55555555555554443 45555555555555555554433100000000 000000123455555554 245
Q ss_pred ccccCCcccCCccceEeccccccccCCCCCCCCCCCcceEEE
Q 002538 831 KSIYWKLVPFPHLKEIIVHQCNWLKKLPLDSNSAKEHKIVIH 872 (911)
Q Consensus 831 ~~~~~~~~~~p~L~~L~i~~C~~L~~lP~~~~~~~~~l~~~~ 872 (911)
+.+|..+..+++|+.|++.+|++|+.+|..... +++|...+
T Consensus 859 ~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~-L~~L~~L~ 899 (1153)
T PLN03210 859 EEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISK-LKHLETVD 899 (1153)
T ss_pred ccChHHHhcCCCCCEEECCCCCCcCccCccccc-ccCCCeee
Confidence 556666677999999999999999999987654 45554443
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.82 E-value=4.6e-22 Score=211.62 Aligned_cols=294 Identities=18% Similarity=0.195 Sum_probs=217.0
Q ss_pred ccCCCCCCcccceEEEeecCCcccCCC-CCCCCCccEEEcccCcccccChhhhccCCCCcEEEccCCCCcccCccccCcC
Q 002538 508 AVAPGVEGWEKVKRLLLMKNHIKHLPD-IPTCPHLLTLFLSHNQLRWISEDFFQFMPSLKVLNLSFTKRHKFPSGISKLA 586 (911)
Q Consensus 508 ~~~~~~~~~~~l~~L~l~~~~~~~l~~-~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~ 586 (911)
.+|+.+..+..+..|+++.|.+.+.|. +...+++-+|+|++|++..+|...|-++..|-+||||+|++..+|+.+..|.
T Consensus 94 GiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~ 173 (1255)
T KOG0444|consen 94 GIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLS 173 (1255)
T ss_pred CCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHh
Confidence 456777788888899999998888875 6777888899999998888888888888888999999999999988998999
Q ss_pred CCCEEeccCCCcCCc-chhhhccCcCcEEecCCCcc-ccccChhhhccCccCcEEEecCCCCCcccccCCCcccccCccc
Q 002538 587 SLQLIDLSYTSIRGL-PEELKALINLKCLNLDQTKF-LVTIPRHLISSFSMLHVLRMFGSGSSVFHEASGDSILFDGGEL 664 (911)
Q Consensus 587 ~L~~L~L~~~~i~~l-p~~l~~L~~L~~L~L~~~~~-l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 664 (911)
+|++|+|++|.+... -..+..+++|+.|.+++++. +..+|.. +..|.+|+.++++.|... .
T Consensus 174 ~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Pts-ld~l~NL~dvDlS~N~Lp----------------~ 236 (1255)
T KOG0444|consen 174 MLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTS-LDDLHNLRDVDLSENNLP----------------I 236 (1255)
T ss_pred hhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCc-hhhhhhhhhccccccCCC----------------c
Confidence 999999998855431 12233567888888888753 4577876 788889999998888764 5
Q ss_pred chhhhcCCCCCcEEEEEecCchhhHhhhhcccccCcceEEEeeeccCCCceeecccccccccceEeeccccccceeEecc
Q 002538 665 LADELLGLKYLEVLDITLRSRHALQSVLSSHKLRSCTQAIFLQCFKDSKSIYAAALADLKHLKKLCISQCEELEELKIDC 744 (911)
Q Consensus 665 ~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~ 744 (911)
.++.+-.+++|+.|+++.|.++.+..-. ....++++|+++.+. ++.+| ..+..+++|+.|.+.++ .+. +
T Consensus 237 vPecly~l~~LrrLNLS~N~iteL~~~~---~~W~~lEtLNlSrNQ-Lt~LP-~avcKL~kL~kLy~n~N-kL~-----F 305 (1255)
T KOG0444|consen 237 VPECLYKLRNLRRLNLSGNKITELNMTE---GEWENLETLNLSRNQ-LTVLP-DAVCKLTKLTKLYANNN-KLT-----F 305 (1255)
T ss_pred chHHHhhhhhhheeccCcCceeeeeccH---HHHhhhhhhccccch-hccch-HHHhhhHHHHHHHhccC-ccc-----c
Confidence 7788888999999999887766543221 223467777776543 34444 36677888888888654 232 1
Q ss_pred cCccccccccccCCccCEEEEecCCCCCCCcc-cccCCCcceEeEecccccccccccCcchhhhhhcCCCCcccccceec
Q 002538 745 TGEVKRMCQPYIFRSLNKVQIYSCPVLKDLTF-LVFAPNLKSIDVRSCSVMKEIVSAGKSADIAEMMGNMSPFAKLQNLQ 823 (911)
Q Consensus 745 ~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~~-l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~p~L~~L~ 823 (911)
-+ .+.+++.+.+|+.+...++ +++-+|. ++.++.|+.|.|+. +.+-.+|. .+.-+|.|+.|+
T Consensus 306 eG---iPSGIGKL~~Levf~aanN-~LElVPEglcRC~kL~kL~L~~-NrLiTLPe------------aIHlL~~l~vLD 368 (1255)
T KOG0444|consen 306 EG---IPSGIGKLIQLEVFHAANN-KLELVPEGLCRCVKLQKLKLDH-NRLITLPE------------AIHLLPDLKVLD 368 (1255)
T ss_pred cC---CccchhhhhhhHHHHhhcc-ccccCchhhhhhHHHHHhcccc-cceeechh------------hhhhcCCcceee
Confidence 11 1233456888999988887 6776665 88899999999987 44555554 667799999999
Q ss_pred cccccccccccCCcccCCccceE
Q 002538 824 LVRLQNLKSIYWKLVPFPHLKEI 846 (911)
Q Consensus 824 L~~~~~L~~~~~~~~~~p~L~~L 846 (911)
+...|+|..-|....+-.+|+--
T Consensus 369 lreNpnLVMPPKP~da~~~lefY 391 (1255)
T KOG0444|consen 369 LRENPNLVMPPKPNDARKKLEFY 391 (1255)
T ss_pred ccCCcCccCCCCcchhhhcceee
Confidence 99999998766543333444433
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.74 E-value=5.2e-20 Score=187.16 Aligned_cols=326 Identities=21% Similarity=0.264 Sum_probs=206.0
Q ss_pred ccCCCCCCcccceEEEeecCCcccCCCCCCCCCccEEEcccCcccccChhhhccCCCCcEEEccCCCCcccCccccCcCC
Q 002538 508 AVAPGVEGWEKVKRLLLMKNHIKHLPDIPTCPHLLTLFLSHNQLRWISEDFFQFMPSLKVLNLSFTKRHKFPSGISKLAS 587 (911)
Q Consensus 508 ~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~ 587 (911)
+.|+.++.+.++..|++..|.+..+|+|..|+.|..|.+..|.+..+|....+.+++|.+|||++|+++++|+.++.+.+
T Consensus 197 tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrs 276 (565)
T KOG0472|consen 197 TLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRS 276 (565)
T ss_pred cCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHHhhh
Confidence 46778888899999999999999999999999999999999999999999888999999999999999999999999999
Q ss_pred CCEEeccCCCcCCcchhhhccCcCcEEecCCCccccccChhhhccCcc--CcEEEe--cCCCCCcccccCCCcccccCcc
Q 002538 588 LQLIDLSYTSIRGLPEELKALINLKCLNLDQTKFLVTIPRHLISSFSM--LHVLRM--FGSGSSVFHEASGDSILFDGGE 663 (911)
Q Consensus 588 L~~L~L~~~~i~~lp~~l~~L~~L~~L~L~~~~~l~~lp~~~i~~l~~--L~~L~l--~~~~~~~~~~~~~~~~~~~~~~ 663 (911)
|.+||+++|.|+.+|.+++++ .|+.|-+.||+ +..+-.+++.+-+. |++|.- ..-+.+...+.+ ...+....
T Consensus 277 L~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNP-lrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~--e~~~t~~~ 352 (565)
T KOG0472|consen 277 LERLDLSNNDISSLPYSLGNL-HLKFLALEGNP-LRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGT--ETAMTLPS 352 (565)
T ss_pred hhhhcccCCccccCCcccccc-eeeehhhcCCc-hHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccc--cccCCCCC
Confidence 999999999999999999999 99999999998 67777765544332 333321 111111000000 00111112
Q ss_pred cchhhhcCCCCCcEEEEEecCchhhHhhhhcccccCcceEEEeeeccCCCceeecccccccccceEeeccccccceeEec
Q 002538 664 LLADELLGLKYLEVLDITLRSRHALQSVLSSHKLRSCTQAIFLQCFKDSKSIYAAALADLKHLKKLCISQCEELEELKID 743 (911)
Q Consensus 664 ~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~ 743 (911)
........+.+.+.|+++....+.++.-.....-..-.+.++++.+. +..+|. .+..+..+.+.-+..+..+..+ +.
T Consensus 353 ~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNq-L~elPk-~L~~lkelvT~l~lsnn~isfv-~~ 429 (565)
T KOG0472|consen 353 ESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQ-LCELPK-RLVELKELVTDLVLSNNKISFV-PL 429 (565)
T ss_pred CcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccch-Hhhhhh-hhHHHHHHHHHHHhhcCccccc-hH
Confidence 22333445566777777765555544322222111233444444322 111110 1222222222222222222211 11
Q ss_pred ccCccccccccccCCccCEEEEecCCCCCCCcc-cccCCCcceEeEecccccccccccC-----------cchhhhhhc-
Q 002538 744 CTGEVKRMCQPYIFRSLNKVQIYSCPVLKDLTF-LVFAPNLKSIDVRSCSVMKEIVSAG-----------KSADIAEMM- 810 (911)
Q Consensus 744 ~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~~-l~~l~~L~~L~L~~c~~l~~i~~~~-----------~~~~~~~~~- 810 (911)
.. ..+++|..|+|+++ .+.++|. ++++..|+.|+|+.+ ..+.+|.-- ...++..+.
T Consensus 430 ~l---------~~l~kLt~L~L~NN-~Ln~LP~e~~~lv~Lq~LnlS~N-rFr~lP~~~y~lq~lEtllas~nqi~~vd~ 498 (565)
T KOG0472|consen 430 EL---------SQLQKLTFLDLSNN-LLNDLPEEMGSLVRLQTLNLSFN-RFRMLPECLYELQTLETLLASNNQIGSVDP 498 (565)
T ss_pred HH---------Hhhhcceeeecccc-hhhhcchhhhhhhhhheeccccc-ccccchHHHhhHHHHHHHHhccccccccCh
Confidence 11 23566666666665 3455554 455566666666653 333333210 000111111
Q ss_pred CCCCcccccceeccccccccccccCCcccCCccceEeccccc
Q 002538 811 GNMSPFAKLQNLQLVRLQNLKSIYWKLVPFPHLKEIIVHQCN 852 (911)
Q Consensus 811 ~~~~~~p~L~~L~L~~~~~L~~~~~~~~~~p~L~~L~i~~C~ 852 (911)
+.+.++.+|..|+|.+ ..+..+|...++|.+|++|.+.+.|
T Consensus 499 ~~l~nm~nL~tLDL~n-Ndlq~IPp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 499 SGLKNMRNLTTLDLQN-NDLQQIPPILGNMTNLRHLELDGNP 539 (565)
T ss_pred HHhhhhhhcceeccCC-CchhhCChhhccccceeEEEecCCc
Confidence 2367899999999987 5799999999999999999999965
No 12
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.57 E-value=2.6e-14 Score=166.36 Aligned_cols=114 Identities=23% Similarity=0.260 Sum_probs=70.1
Q ss_pred ccceEEEeecCCcccCCCCCCCCCccEEEcccCcccccChhhhccCCCCcEEEccCCCCcccCccccCcCCCCEEeccCC
Q 002538 517 EKVKRLLLMKNHIKHLPDIPTCPHLLTLFLSHNQLRWISEDFFQFMPSLKVLNLSFTKRHKFPSGISKLASLQLIDLSYT 596 (911)
Q Consensus 517 ~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~ 596 (911)
.+++.|++.+|.+..+|.. +++|++|++++|.++.+|.. .++|+.|++++|.+..+|... .+|+.|++++|
T Consensus 222 ~~L~~L~L~~N~Lt~LP~l--p~~Lk~LdLs~N~LtsLP~l----p~sL~~L~Ls~N~L~~Lp~lp---~~L~~L~Ls~N 292 (788)
T PRK15387 222 AHITTLVIPDNNLTSLPAL--PPELRTLEVSGNQLTSLPVL----PPGLLELSIFSNPLTHLPALP---SGLCKLWIFGN 292 (788)
T ss_pred cCCCEEEccCCcCCCCCCC--CCCCcEEEecCCccCcccCc----ccccceeeccCCchhhhhhch---hhcCEEECcCC
Confidence 3567777777777666643 46677777777766666532 356677777777666666422 45666777777
Q ss_pred CcCCcchhhhccCcCcEEecCCCccccccChhhhccCccCcEEEecCCCCC
Q 002538 597 SIRGLPEELKALINLKCLNLDQTKFLVTIPRHLISSFSMLHVLRMFGSGSS 647 (911)
Q Consensus 597 ~i~~lp~~l~~L~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~ 647 (911)
+++.+|.. +++|+.|++++|. +..+|.. ..+|+.|++.+|.+.
T Consensus 293 ~Lt~LP~~---p~~L~~LdLS~N~-L~~Lp~l----p~~L~~L~Ls~N~L~ 335 (788)
T PRK15387 293 QLTSLPVL---PPGLQELSVSDNQ-LASLPAL----PSELCKLWAYNNQLT 335 (788)
T ss_pred cccccccc---ccccceeECCCCc-cccCCCC----cccccccccccCccc
Confidence 77766642 3567777777765 4555541 234556666665543
No 13
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.54 E-value=3.8e-17 Score=166.51 Aligned_cols=245 Identities=24% Similarity=0.324 Sum_probs=137.9
Q ss_pred CcccceEEEeecCCcccCCC-CCCCCCccEEEcccCcccccChhhhccCCCCcEEEccCCCCcccCccccCcCCCCEEec
Q 002538 515 GWEKVKRLLLMKNHIKHLPD-IPTCPHLLTLFLSHNQLRWISEDFFQFMPSLKVLNLSFTKRHKFPSGISKLASLQLIDL 593 (911)
Q Consensus 515 ~~~~l~~L~l~~~~~~~l~~-~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~L 593 (911)
.+..+..+.+++|...++|. +..+..+..|+.+.|.+..+|+. +..+..|+.|+.+.|.+..+|++++.+..|..|+.
T Consensus 66 nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~-i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~ 144 (565)
T KOG0472|consen 66 NLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQ-IGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDA 144 (565)
T ss_pred cccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHH-HhhhhhhhhhhccccceeecCchHHHHhhhhhhhc
Confidence 33444445555554444432 44444555555555544444444 33344555555555555555555555555555555
Q ss_pred cCCCcCCcchhhhccCcCcEEecCCCccccccChhhhccCccCcEEEecCCCCCcccccCCCcccccCcccchhhhcCCC
Q 002538 594 SYTSIRGLPEELKALINLKCLNLDQTKFLVTIPRHLISSFSMLHVLRMFGSGSSVFHEASGDSILFDGGELLADELLGLK 673 (911)
Q Consensus 594 ~~~~i~~lp~~l~~L~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 673 (911)
.+|++.++|.++.++.+|..|++.+|. +..+|+..+ +|+.|++|+...|.. +..+.+++.|.
T Consensus 145 ~~N~i~slp~~~~~~~~l~~l~~~~n~-l~~l~~~~i-~m~~L~~ld~~~N~L----------------~tlP~~lg~l~ 206 (565)
T KOG0472|consen 145 TNNQISSLPEDMVNLSKLSKLDLEGNK-LKALPENHI-AMKRLKHLDCNSNLL----------------ETLPPELGGLE 206 (565)
T ss_pred cccccccCchHHHHHHHHHHhhccccc-hhhCCHHHH-HHHHHHhcccchhhh----------------hcCChhhcchh
Confidence 555555555555555555555555554 344444422 255555554443332 23444555555
Q ss_pred CCcEEEEEecCchhhHhhhhcccccCcceEEEeeeccCCCceeecccccccccceEeeccccccceeEecccCccccccc
Q 002538 674 YLEVLDITLRSRHALQSVLSSHKLRSCTQAIFLQCFKDSKSIYAAALADLKHLKKLCISQCEELEELKIDCTGEVKRMCQ 753 (911)
Q Consensus 674 ~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~ 753 (911)
+|..|++..+. +..+| .|++|..|++|++..+ .++.++.+..
T Consensus 207 ~L~~LyL~~Nk---------------------------i~~lP--ef~gcs~L~Elh~g~N-~i~~lpae~~-------- 248 (565)
T KOG0472|consen 207 SLELLYLRRNK---------------------------IRFLP--EFPGCSLLKELHVGEN-QIEMLPAEHL-------- 248 (565)
T ss_pred hhHHHHhhhcc---------------------------cccCC--CCCccHHHHHHHhccc-HHHhhHHHHh--------
Confidence 55444443222 22333 5677788888888644 5554433333
Q ss_pred cccCCccCEEEEecCCCCCCCcc-cccCCCcceEeEecccccccccccCcchhhhhhcCCCCcccccceecccccccccc
Q 002538 754 PYIFRSLNKVQIYSCPVLKDLTF-LVFAPNLKSIDVRSCSVMKEIVSAGKSADIAEMMGNMSPFAKLQNLQLVRLQNLKS 832 (911)
Q Consensus 754 ~~~~~~L~~L~L~~c~~l~~l~~-l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~ 832 (911)
..+++|..|+|..+ +++.+|. +..+.+|++|++++ +.+..+|. .++++ .|+.|.+.+.| ++.
T Consensus 249 -~~L~~l~vLDLRdN-klke~Pde~clLrsL~rLDlSN-N~is~Lp~------------sLgnl-hL~~L~leGNP-lrT 311 (565)
T KOG0472|consen 249 -KHLNSLLVLDLRDN-KLKEVPDEICLLRSLERLDLSN-NDISSLPY------------SLGNL-HLKFLALEGNP-LRT 311 (565)
T ss_pred -cccccceeeecccc-ccccCchHHHHhhhhhhhcccC-CccccCCc------------ccccc-eeeehhhcCCc-hHH
Confidence 24788999999988 7888775 77788999999998 44665554 67777 88889998876 444
Q ss_pred c
Q 002538 833 I 833 (911)
Q Consensus 833 ~ 833 (911)
+
T Consensus 312 i 312 (565)
T KOG0472|consen 312 I 312 (565)
T ss_pred H
Confidence 4
No 14
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.52 E-value=3.5e-16 Score=141.16 Aligned_cols=162 Identities=24% Similarity=0.433 Sum_probs=141.8
Q ss_pred cCCCCCCcccceEEEeecCCcccCC-CCCCCCCccEEEcccCcccccChhhhccCCCCcEEEccCCCCcccCccccCcCC
Q 002538 509 VAPGVEGWEKVKRLLLMKNHIKHLP-DIPTCPHLLTLFLSHNQLRWISEDFFQFMPSLKVLNLSFTKRHKFPSGISKLAS 587 (911)
Q Consensus 509 ~~~~~~~~~~l~~L~l~~~~~~~l~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~ 587 (911)
..++....+++.+|.+++|.+..+| .+..+.+|++|++++|+++.+|.+ ++.++.|+.|++.-|++..+|..||.++-
T Consensus 25 ~~~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~-issl~klr~lnvgmnrl~~lprgfgs~p~ 103 (264)
T KOG0617|consen 25 ELPGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTS-ISSLPKLRILNVGMNRLNILPRGFGSFPA 103 (264)
T ss_pred hcccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChh-hhhchhhhheecchhhhhcCccccCCCch
Confidence 4455666778999999999988775 489999999999999999998887 68899999999999999999999999999
Q ss_pred CCEEeccCCCcCC--cchhhhccCcCcEEecCCCccccccChhhhccCccCcEEEecCCCCCcccccCCCcccccCcccc
Q 002538 588 LQLIDLSYTSIRG--LPEELKALINLKCLNLDQTKFLVTIPRHLISSFSMLHVLRMFGSGSSVFHEASGDSILFDGGELL 665 (911)
Q Consensus 588 L~~L~L~~~~i~~--lp~~l~~L~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 665 (911)
|+.|||.+|++.+ +|..|..++-|+.|.+++|. ..-+|++ ++++++||.|.+..|... ..
T Consensus 104 levldltynnl~e~~lpgnff~m~tlralyl~dnd-fe~lp~d-vg~lt~lqil~lrdndll----------------~l 165 (264)
T KOG0617|consen 104 LEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDND-FEILPPD-VGKLTNLQILSLRDNDLL----------------SL 165 (264)
T ss_pred hhhhhccccccccccCCcchhHHHHHHHHHhcCCC-cccCChh-hhhhcceeEEeeccCchh----------------hC
Confidence 9999999998877 99999999999999999998 4888888 899999999999988764 67
Q ss_pred hhhhcCCCCCcEEEEEecCchhhH
Q 002538 666 ADELLGLKYLEVLDITLRSRHALQ 689 (911)
Q Consensus 666 ~~~l~~L~~L~~L~l~~~~~~~~~ 689 (911)
+.+++.|+.|++|+|.++....++
T Consensus 166 pkeig~lt~lrelhiqgnrl~vlp 189 (264)
T KOG0617|consen 166 PKEIGDLTRLRELHIQGNRLTVLP 189 (264)
T ss_pred cHHHHHHHHHHHHhcccceeeecC
Confidence 889999999999999887766544
No 15
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.51 E-value=1.2e-15 Score=171.52 Aligned_cols=286 Identities=20% Similarity=0.241 Sum_probs=180.9
Q ss_pred cceEEEeecCCcccCCCCCCCCCccEEEcccCcccccChhhhccCCCCcEEEccCCCCcccCccccCcCCCCEEeccCCC
Q 002538 518 KVKRLLLMKNHIKHLPDIPTCPHLLTLFLSHNQLRWISEDFFQFMPSLKVLNLSFTKRHKFPSGISKLASLQLIDLSYTS 597 (911)
Q Consensus 518 ~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~ 597 (911)
++++|....|.+..+..-....+|++++++.|.++.+| +.++.+.+|..++..+|++..+|..+....+|++|.+..|.
T Consensus 220 ~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp-~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~ne 298 (1081)
T KOG0618|consen 220 SLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLP-EWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNE 298 (1081)
T ss_pred chheeeeccCcceeeccccccccceeeecchhhhhcch-HHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhh
Confidence 56666666666654433455567778888888777777 66777888888888888887778777777888888887788
Q ss_pred cCCcchhhhccCcCcEEecCCCccccccChhhhccCcc-CcEEEecCCCCCcccccCCCcccccCcccchhhhcCCCCCc
Q 002538 598 IRGLPEELKALINLKCLNLDQTKFLVTIPRHLISSFSM-LHVLRMFGSGSSVFHEASGDSILFDGGELLADELLGLKYLE 676 (911)
Q Consensus 598 i~~lp~~l~~L~~L~~L~L~~~~~l~~lp~~~i~~l~~-L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 676 (911)
+..+|.....++.|++|+|..|. +..+|...+..+.. |+.|+.+.+.......... ..+..|+
T Consensus 299 l~yip~~le~~~sL~tLdL~~N~-L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e---------------~~~~~Lq 362 (1081)
T KOG0618|consen 299 LEYIPPFLEGLKSLRTLDLQSNN-LPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEE---------------NNHAALQ 362 (1081)
T ss_pred hhhCCCcccccceeeeeeehhcc-ccccchHHHhhhhHHHHHHhhhhccccccccccc---------------hhhHHHH
Confidence 88777777777888888887776 67777655544443 5555555544431111100 1112233
Q ss_pred EEEEEecCchhhHhhhhcccccCcceEEEeeeccCCCceeecccccccccceEeeccccccceeEecccCcccccccccc
Q 002538 677 VLDITLRSRHALQSVLSSHKLRSCTQAIFLQCFKDSKSIYAAALADLKHLKKLCISQCEELEELKIDCTGEVKRMCQPYI 756 (911)
Q Consensus 677 ~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~ 756 (911)
.|.+.+|..+. +.........+|+.|+|+++. +.+++...+.++..|+.|+++|+ .++.++... ..
T Consensus 363 ~LylanN~Ltd--~c~p~l~~~~hLKVLhLsyNr-L~~fpas~~~kle~LeeL~LSGN-kL~~Lp~tv----------a~ 428 (1081)
T KOG0618|consen 363 ELYLANNHLTD--SCFPVLVNFKHLKVLHLSYNR-LNSFPASKLRKLEELEELNLSGN-KLTTLPDTV----------AN 428 (1081)
T ss_pred HHHHhcCcccc--cchhhhccccceeeeeecccc-cccCCHHHHhchHHhHHHhcccc-hhhhhhHHH----------Hh
Confidence 33333222211 111111223455555555432 44455557788899999999997 566554332 24
Q ss_pred CCccCEEEEecCCCCCCCcccccCCCcceEeEecccccccccccCcchhhhhhcCCCCcccccceeccccccccccccCC
Q 002538 757 FRSLNKVQIYSCPVLKDLTFLVFAPNLKSIDVRSCSVMKEIVSAGKSADIAEMMGNMSPFAKLQNLQLVRLQNLKSIYWK 836 (911)
Q Consensus 757 ~~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~~~~~ 836 (911)
++.|+.|...++ .+..+|.+.++|.|+.+|++. +.++.+.- +.... -|+|++|++++.+.+. .+
T Consensus 429 ~~~L~tL~ahsN-~l~~fPe~~~l~qL~~lDlS~-N~L~~~~l----------~~~~p-~p~LkyLdlSGN~~l~---~d 492 (1081)
T KOG0618|consen 429 LGRLHTLRAHSN-QLLSFPELAQLPQLKVLDLSC-NNLSEVTL----------PEALP-SPNLKYLDLSGNTRLV---FD 492 (1081)
T ss_pred hhhhHHHhhcCC-ceeechhhhhcCcceEEeccc-chhhhhhh----------hhhCC-CcccceeeccCCcccc---cc
Confidence 889999998777 788888999999999999986 55666532 11222 2899999999976532 33
Q ss_pred cccCCccceEeccc
Q 002538 837 LVPFPHLKEIIVHQ 850 (911)
Q Consensus 837 ~~~~p~L~~L~i~~ 850 (911)
...|+.|+.+...+
T Consensus 493 ~~~l~~l~~l~~~~ 506 (1081)
T KOG0618|consen 493 HKTLKVLKSLSQMD 506 (1081)
T ss_pred hhhhHHhhhhhhee
Confidence 44455555554443
No 16
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.48 E-value=2.4e-15 Score=169.09 Aligned_cols=245 Identities=18% Similarity=0.237 Sum_probs=115.2
Q ss_pred CCCcEEEccCCCCcccCccccCcCCCCEEeccCCCcCCcchhhhccCcCcEEecCCCccccccChhhhccCccCcEEEec
Q 002538 563 PSLKVLNLSFTKRHKFPSGISKLASLQLIDLSYTSIRGLPEELKALINLKCLNLDQTKFLVTIPRHLISSFSMLHVLRMF 642 (911)
Q Consensus 563 ~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~l~~L~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~ 642 (911)
.+|++++++++++..+|+.++.+.+|+.+++.+|++..+|..+...++|+.|.+..|. +..+|+. ..++++|++|++.
T Consensus 241 ~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~ne-l~yip~~-le~~~sL~tLdL~ 318 (1081)
T KOG0618|consen 241 LNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNE-LEYIPPF-LEGLKSLRTLDLQ 318 (1081)
T ss_pred ccceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhh-hhhCCCc-ccccceeeeeeeh
Confidence 3555666666666666655566666666666666665566555555666666655554 4555553 4455566666655
Q ss_pred CCCCCcccccCCCcccccCcccchhhhcCCCC-CcEEEEEecCchhhHhhhhcccccCcceEEEeeeccCCCceeecccc
Q 002538 643 GSGSSVFHEASGDSILFDGGELLADELLGLKY-LEVLDITLRSRHALQSVLSSHKLRSCTQAIFLQCFKDSKSIYAAALA 721 (911)
Q Consensus 643 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~-L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~ 721 (911)
.|.+.... ...+..+.. |+.|+.+.+....++.. .......++.|.+.++. +++-....+.
T Consensus 319 ~N~L~~lp---------------~~~l~v~~~~l~~ln~s~n~l~~lp~~--~e~~~~~Lq~LylanN~-Ltd~c~p~l~ 380 (1081)
T KOG0618|consen 319 SNNLPSLP---------------DNFLAVLNASLNTLNVSSNKLSTLPSY--EENNHAALQELYLANNH-LTDSCFPVLV 380 (1081)
T ss_pred hccccccc---------------hHHHhhhhHHHHHHhhhhccccccccc--cchhhHHHHHHHHhcCc-ccccchhhhc
Confidence 55443110 011111111 22222222222221110 00111233333333322 1111122445
Q ss_pred cccccceEeeccccccceeEecccCccccccccccCCccCEEEEecCCCCCCCcc-cccCCCcceEeEeccccccccccc
Q 002538 722 DLKHLKKLCISQCEELEELKIDCTGEVKRMCQPYIFRSLNKVQIYSCPVLKDLTF-LVFAPNLKSIDVRSCSVMKEIVSA 800 (911)
Q Consensus 722 ~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~~-l~~l~~L~~L~L~~c~~l~~i~~~ 800 (911)
++.+|+.|+++++ .+..++.... ..++.|+.|+|+|+ +++.+|. +..++.|++|...+ +.+...|
T Consensus 381 ~~~hLKVLhLsyN-rL~~fpas~~---------~kle~LeeL~LSGN-kL~~Lp~tva~~~~L~tL~ahs-N~l~~fP-- 446 (1081)
T KOG0618|consen 381 NFKHLKVLHLSYN-RLNSFPASKL---------RKLEELEELNLSGN-KLTTLPDTVANLGRLHTLRAHS-NQLLSFP-- 446 (1081)
T ss_pred cccceeeeeeccc-ccccCCHHHH---------hchHHhHHHhcccc-hhhhhhHHHHhhhhhHHHhhcC-Cceeech--
Confidence 5555666666543 2332222222 13555555566655 4555543 44555555555544 2233322
Q ss_pred CcchhhhhhcCCCCcccccceeccccccccccccCCccc-CCccceEecccccc
Q 002538 801 GKSADIAEMMGNMSPFAKLQNLQLVRLQNLKSIYWKLVP-FPHLKEIIVHQCNW 853 (911)
Q Consensus 801 ~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~~~~~~~~-~p~L~~L~i~~C~~ 853 (911)
.+..+|.|+.++++. .+|+.+...... .|+|++|++++.+.
T Consensus 447 -----------e~~~l~qL~~lDlS~-N~L~~~~l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 447 -----------ELAQLPQLKVLDLSC-NNLSEVTLPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred -----------hhhhcCcceEEeccc-chhhhhhhhhhCCCcccceeeccCCcc
Confidence 245567777777754 456554332222 26777777777654
No 17
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.47 E-value=4.3e-14 Score=168.38 Aligned_cols=316 Identities=22% Similarity=0.301 Sum_probs=196.5
Q ss_pred CcccCCCCCCcccceEEEeecCC--cccCCC--CCCCCCccEEEcccC-cccccChhhhccCCCCcEEEccCCCCcccCc
Q 002538 506 GLAVAPGVEGWEKVKRLLLMKNH--IKHLPD--IPTCPHLLTLFLSHN-QLRWISEDFFQFMPSLKVLNLSFTKRHKFPS 580 (911)
Q Consensus 506 ~~~~~~~~~~~~~l~~L~l~~~~--~~~l~~--~~~~~~L~~L~l~~~-~l~~~~~~~~~~l~~L~~L~L~~~~~~~lp~ 580 (911)
.....+.....++++.|-+..|. +..++. +..++.|++|++++| .+..+|.. ++.+-+||||+++++.+..+|.
T Consensus 534 ~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~-I~~Li~LryL~L~~t~I~~LP~ 612 (889)
T KOG4658|consen 534 KIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSS-IGELVHLRYLDLSDTGISHLPS 612 (889)
T ss_pred chhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChH-HhhhhhhhcccccCCCccccch
Confidence 33333444455589999999986 666665 788999999999998 56666665 7999999999999999999999
Q ss_pred cccCcCCCCEEeccCCC-cCCcchhhhccCcCcEEecCCCccccccChhhhccCccCcEEEecCCCCCcccccCCCcccc
Q 002538 581 GISKLASLQLIDLSYTS-IRGLPEELKALINLKCLNLDQTKFLVTIPRHLISSFSMLHVLRMFGSGSSVFHEASGDSILF 659 (911)
Q Consensus 581 ~i~~l~~L~~L~L~~~~-i~~lp~~l~~L~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 659 (911)
++++|..|.+||+..+. +..+|..+..|++|++|.+.... .......++.+.+|++|....+...
T Consensus 613 ~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~--~~~~~~~l~el~~Le~L~~ls~~~~------------ 678 (889)
T KOG4658|consen 613 GLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA--LSNDKLLLKELENLEHLENLSITIS------------ 678 (889)
T ss_pred HHHHHHhhheeccccccccccccchhhhcccccEEEeeccc--cccchhhHHhhhcccchhhheeecc------------
Confidence 99999999999999984 45567777779999999997764 1111112444445554444333222
Q ss_pred cCcccchhhhcCCCCCcEEEEEec-CchhhHhhhhcccccCcceEEEeeeccCCCcee----ecccc-cccccceEeecc
Q 002538 660 DGGELLADELLGLKYLEVLDITLR-SRHALQSVLSSHKLRSCTQAIFLQCFKDSKSIY----AAALA-DLKHLKKLCISQ 733 (911)
Q Consensus 660 ~~~~~~~~~l~~L~~L~~L~l~~~-~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~----~~~l~-~l~~L~~L~l~~ 733 (911)
.......+..+..|..+..... ................+++.|.+.+|...+... ..... .+++|..+.+.+
T Consensus 679 --s~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~ 756 (889)
T KOG4658|consen 679 --SVLLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILN 756 (889)
T ss_pred --hhHhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhc
Confidence 1122333444444443222211 112223333334445677778877776533211 00111 256777888888
Q ss_pred ccccceeEecccCccccccccccCCccCEEEEecCCCCCCCcc-cccCCCcceEeEecccccccccccCcchhhhhhcCC
Q 002538 734 CEELEELKIDCTGEVKRMCQPYIFRSLNKVQIYSCPVLKDLTF-LVFAPNLKSIDVRSCSVMKEIVSAGKSADIAEMMGN 812 (911)
Q Consensus 734 ~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~~-l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~ 812 (911)
|..... +.|.. ..|+|+.|.+..|+.++++.+ ...+..++.+.+.. +.+.... ....
T Consensus 757 ~~~~r~--l~~~~---------f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f-~~~~~l~----------~~~~ 814 (889)
T KOG4658|consen 757 CHMLRD--LTWLL---------FAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPF-NKLEGLR----------MLCS 814 (889)
T ss_pred cccccc--cchhh---------ccCcccEEEEecccccccCCCHHHHhhhcccEEecc-cccccce----------eeec
Confidence 877773 44442 378999999999998888644 44455555433332 2222210 0013
Q ss_pred CCcccccceeccccccccccccCCc----ccCCccceEecccc-ccccCCCCCC
Q 002538 813 MSPFAKLQNLQLVRLQNLKSIYWKL----VPFPHLKEIIVHQC-NWLKKLPLDS 861 (911)
Q Consensus 813 ~~~~p~L~~L~L~~~~~L~~~~~~~----~~~p~L~~L~i~~C-~~L~~lP~~~ 861 (911)
.++||++..+.+... .|..+.... ..+|.+.++.+.+| +++..+|.+.
T Consensus 815 l~~l~~i~~~~l~~~-~l~~~~ve~~p~l~~~P~~~~~~i~~~~~~~~~~~~~~ 867 (889)
T KOG4658|consen 815 LGGLPQLYWLPLSFL-KLEELIVEECPKLGKLPLLSTLTIVGCEEKLKEYPDGE 867 (889)
T ss_pred CCCCceeEecccCcc-chhheehhcCcccccCccccccceeccccceeecCCcc
Confidence 344455544444442 244443332 45789999999997 9999999763
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.45 E-value=2.6e-13 Score=159.28 Aligned_cols=116 Identities=23% Similarity=0.371 Sum_probs=63.4
Q ss_pred ceEEEeecCCcccCCCCCCCCCccEEEcccCcccccChhhhccCCCCcEEEccCCCCcccCccccCcCCCCEEeccCCCc
Q 002538 519 VKRLLLMKNHIKHLPDIPTCPHLLTLFLSHNQLRWISEDFFQFMPSLKVLNLSFTKRHKFPSGISKLASLQLIDLSYTSI 598 (911)
Q Consensus 519 l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i 598 (911)
...|.+.++.+..+|.. -.++|+.|++++|.++.+|...+ ++|++|++++|+++.+|..+. .+|+.|+|++|.+
T Consensus 180 ~~~L~L~~~~LtsLP~~-Ip~~L~~L~Ls~N~LtsLP~~l~---~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L 253 (754)
T PRK15370 180 KTELRLKILGLTTIPAC-IPEQITTLILDNNELKSLPENLQ---GNIKTLYANSNQLTSIPATLP--DTIQEMELSINRI 253 (754)
T ss_pred ceEEEeCCCCcCcCCcc-cccCCcEEEecCCCCCcCChhhc---cCCCEEECCCCccccCChhhh--ccccEEECcCCcc
Confidence 34455555555555541 12456666666666665555432 356666666666666655443 3566666666666
Q ss_pred CCcchhhhccCcCcEEecCCCccccccChhhhccCccCcEEEecCCCC
Q 002538 599 RGLPEELKALINLKCLNLDQTKFLVTIPRHLISSFSMLHVLRMFGSGS 646 (911)
Q Consensus 599 ~~lp~~l~~L~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~ 646 (911)
..+|..+. .+|+.|++++|. +..+|.. + .++|+.|++++|.+
T Consensus 254 ~~LP~~l~--s~L~~L~Ls~N~-L~~LP~~-l--~~sL~~L~Ls~N~L 295 (754)
T PRK15370 254 TELPERLP--SALQSLDLFHNK-ISCLPEN-L--PEELRYLSVYDNSI 295 (754)
T ss_pred CcCChhHh--CCCCEEECcCCc-cCccccc-c--CCCCcEEECCCCcc
Confidence 66665543 356666666554 4555543 2 13566666666544
No 19
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.44 E-value=7.7e-13 Score=154.25 Aligned_cols=255 Identities=19% Similarity=0.142 Sum_probs=190.2
Q ss_pred cceEEEeecCCcccCCCCCCCCCccEEEcccCcccccChhhhccCCCCcEEEccCCCCcccCccccCcCCCCEEeccCCC
Q 002538 518 KVKRLLLMKNHIKHLPDIPTCPHLLTLFLSHNQLRWISEDFFQFMPSLKVLNLSFTKRHKFPSGISKLASLQLIDLSYTS 597 (911)
Q Consensus 518 ~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~ 597 (911)
+-..|+++.+.+..+|... .++|+.|.+.+|.++.+|.. +++|++|++++|+++.+|.. .++|+.|++++|.
T Consensus 202 ~~~~LdLs~~~LtsLP~~l-~~~L~~L~L~~N~Lt~LP~l----p~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~ 273 (788)
T PRK15387 202 GNAVLNVGESGLTTLPDCL-PAHITTLVIPDNNLTSLPAL----PPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNP 273 (788)
T ss_pred CCcEEEcCCCCCCcCCcch-hcCCCEEEccCCcCCCCCCC----CCCCcEEEecCCccCcccCc---ccccceeeccCCc
Confidence 3456888888888888621 35899999999999988752 68999999999999999854 4689999999999
Q ss_pred cCCcchhhhccCcCcEEecCCCccccccChhhhccCccCcEEEecCCCCCcccccCCCcccccCcccchhhhcCCCCCcE
Q 002538 598 IRGLPEELKALINLKCLNLDQTKFLVTIPRHLISSFSMLHVLRMFGSGSSVFHEASGDSILFDGGELLADELLGLKYLEV 677 (911)
Q Consensus 598 i~~lp~~l~~L~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~ 677 (911)
+..+|... .+|+.|++++|. +..+|. .+++|+.|++++|.+. ..+. ...+|+.
T Consensus 274 L~~Lp~lp---~~L~~L~Ls~N~-Lt~LP~----~p~~L~~LdLS~N~L~----------------~Lp~---lp~~L~~ 326 (788)
T PRK15387 274 LTHLPALP---SGLCKLWIFGNQ-LTSLPV----LPPGLQELSVSDNQLA----------------SLPA---LPSELCK 326 (788)
T ss_pred hhhhhhch---hhcCEEECcCCc-cccccc----cccccceeECCCCccc----------------cCCC---Ccccccc
Confidence 99988643 578899999997 788885 2478999999999765 1111 1235777
Q ss_pred EEEEecCchhhHhhhhcccccCcceEEEeeeccCCCceeecccccccccceEeeccccccceeEecccCccccccccccC
Q 002538 678 LDITLRSRHALQSVLSSHKLRSCTQAIFLQCFKDSKSIYAAALADLKHLKKLCISQCEELEELKIDCTGEVKRMCQPYIF 757 (911)
Q Consensus 678 L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~ 757 (911)
|.++.|....++. +...|+.|+++++. +..++. + .++|+.|+++++ .+..++ ..+
T Consensus 327 L~Ls~N~L~~LP~------lp~~Lq~LdLS~N~-Ls~LP~--l--p~~L~~L~Ls~N-~L~~LP-------------~l~ 381 (788)
T PRK15387 327 LWAYNNQLTSLPT------LPSGLQELSVSDNQ-LASLPT--L--PSELYKLWAYNN-RLTSLP-------------ALP 381 (788)
T ss_pred cccccCccccccc------cccccceEecCCCc-cCCCCC--C--Ccccceehhhcc-ccccCc-------------ccc
Confidence 7788777665553 23578899998754 444432 1 357888888765 344321 124
Q ss_pred CccCEEEEecCCCCCCCcccccCCCcceEeEecccccccccccCcchhhhhhcCCCCcccccceeccccccccccccCCc
Q 002538 758 RSLNKVQIYSCPVLKDLTFLVFAPNLKSIDVRSCSVMKEIVSAGKSADIAEMMGNMSPFAKLQNLQLVRLQNLKSIYWKL 837 (911)
Q Consensus 758 ~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~~~~~~ 837 (911)
.+|+.|+|++| .++.+|.. .++|+.|++++|. ++.+|. .+.+|+.|++++ ..++.+|..+
T Consensus 382 ~~L~~LdLs~N-~Lt~LP~l--~s~L~~LdLS~N~-LssIP~---------------l~~~L~~L~Ls~-NqLt~LP~sl 441 (788)
T PRK15387 382 SGLKELIVSGN-RLTSLPVL--PSELKELMVSGNR-LTSLPM---------------LPSGLLSLSVYR-NQLTRLPESL 441 (788)
T ss_pred cccceEEecCC-cccCCCCc--ccCCCEEEccCCc-CCCCCc---------------chhhhhhhhhcc-CcccccChHH
Confidence 57999999998 67777743 4789999999964 666543 135788999988 4688999888
Q ss_pred ccCCccceEeccccc
Q 002538 838 VPFPHLKEIIVHQCN 852 (911)
Q Consensus 838 ~~~p~L~~L~i~~C~ 852 (911)
..+++|+.|++++++
T Consensus 442 ~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 442 IHLSSETTVNLEGNP 456 (788)
T ss_pred hhccCCCeEECCCCC
Confidence 889999999999875
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.44 E-value=2.9e-13 Score=158.96 Aligned_cols=244 Identities=20% Similarity=0.259 Sum_probs=165.4
Q ss_pred EEEcCCCcccCCCCCCcccceEEEeecCCcccCCCCCCCCCccEEEcccCcccccChhhhccCCCCcEEEccCCCCcccC
Q 002538 500 LVYAGTGLAVAPGVEGWEKVKRLLLMKNHIKHLPDIPTCPHLLTLFLSHNQLRWISEDFFQFMPSLKVLNLSFTKRHKFP 579 (911)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~lp 579 (911)
+...+.++...|.. -.+.++.|++++|.+..+|.. .+++|++|++++|.++.+|..+. .+|+.|+|++|.+..+|
T Consensus 183 L~L~~~~LtsLP~~-Ip~~L~~L~Ls~N~LtsLP~~-l~~nL~~L~Ls~N~LtsLP~~l~---~~L~~L~Ls~N~L~~LP 257 (754)
T PRK15370 183 LRLKILGLTTIPAC-IPEQITTLILDNNELKSLPEN-LQGNIKTLYANSNQLTSIPATLP---DTIQEMELSINRITELP 257 (754)
T ss_pred EEeCCCCcCcCCcc-cccCCcEEEecCCCCCcCChh-hccCCCEEECCCCccccCChhhh---ccccEEECcCCccCcCC
Confidence 33344444444431 235799999999999988763 23689999999999988887542 47999999999999999
Q ss_pred ccccCcCCCCEEeccCCCcCCcchhhhccCcCcEEecCCCccccccChhhhccCccCcEEEecCCCCCcccccCCCcccc
Q 002538 580 SGISKLASLQLIDLSYTSIRGLPEELKALINLKCLNLDQTKFLVTIPRHLISSFSMLHVLRMFGSGSSVFHEASGDSILF 659 (911)
Q Consensus 580 ~~i~~l~~L~~L~L~~~~i~~lp~~l~~L~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 659 (911)
..+. .+|++|++++|+++.+|..+. .+|+.|++++|. +..+|.. + .++|+.|++++|.+.
T Consensus 258 ~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~-Lt~LP~~-l--p~sL~~L~Ls~N~Lt------------ 317 (754)
T PRK15370 258 ERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNS-IRTLPAH-L--PSGITHLNVQSNSLT------------ 317 (754)
T ss_pred hhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCc-cccCccc-c--hhhHHHHHhcCCccc------------
Confidence 8775 589999999999999998764 589999999996 6788864 2 247888888887654
Q ss_pred cCcccchhhhcCCCCCcEEEEEecCchhhHhhhhcccccCcceEEEeeeccCCCceeecccccccccceEeeccccccce
Q 002538 660 DGGELLADELLGLKYLEVLDITLRSRHALQSVLSSHKLRSCTQAIFLQCFKDSKSIYAAALADLKHLKKLCISQCEELEE 739 (911)
Q Consensus 660 ~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~ 739 (911)
..+..+ .++|+.|+++.+.... ++. .+ .++|+.|++++|. +..
T Consensus 318 ----~LP~~l--~~sL~~L~Ls~N~Lt~---------------------------LP~-~l--~~sL~~L~Ls~N~-L~~ 360 (754)
T PRK15370 318 ----ALPETL--PPGLKTLEAGENALTS---------------------------LPA-SL--PPELQVLDVSKNQ-ITV 360 (754)
T ss_pred ----cCCccc--cccceeccccCCcccc---------------------------CCh-hh--cCcccEEECCCCC-CCc
Confidence 111111 1456666555433221 111 12 2578888888774 333
Q ss_pred eEecccCccccccccccCCccCEEEEecCCCCCCCcccccCCCcceEeEecccccccccccCcchhhhhhcCCCCccccc
Q 002538 740 LKIDCTGEVKRMCQPYIFRSLNKVQIYSCPVLKDLTFLVFAPNLKSIDVRSCSVMKEIVSAGKSADIAEMMGNMSPFAKL 819 (911)
Q Consensus 740 l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~p~L 819 (911)
++ .. ..++|+.|+|++| .+..+|.- -.++|+.|++++| .+..+|. .++.....+|++
T Consensus 361 LP-~~-----------lp~~L~~LdLs~N-~Lt~LP~~-l~~sL~~LdLs~N-~L~~LP~--------sl~~~~~~~~~l 417 (754)
T PRK15370 361 LP-ET-----------LPPTITTLDVSRN-ALTNLPEN-LPAALQIMQASRN-NLVRLPE--------SLPHFRGEGPQP 417 (754)
T ss_pred CC-hh-----------hcCCcCEEECCCC-cCCCCCHh-HHHHHHHHhhccC-CcccCch--------hHHHHhhcCCCc
Confidence 32 11 1468999999998 56666641 1246889999885 4666654 122234456888
Q ss_pred ceecccccc
Q 002538 820 QNLQLVRLQ 828 (911)
Q Consensus 820 ~~L~L~~~~ 828 (911)
..|.+.+.+
T Consensus 418 ~~L~L~~Np 426 (754)
T PRK15370 418 TRIIVEYNP 426 (754)
T ss_pred cEEEeeCCC
Confidence 888887754
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.42 E-value=5.1e-15 Score=133.76 Aligned_cols=160 Identities=23% Similarity=0.383 Sum_probs=135.7
Q ss_pred cccCCCCCCCCCccEEEcccCcccccChhhhccCCCCcEEEccCCCCcccCccccCcCCCCEEeccCCCcCCcchhhhcc
Q 002538 529 IKHLPDIPTCPHLLTLFLSHNQLRWISEDFFQFMPSLKVLNLSFTKRHKFPSGISKLASLQLIDLSYTSIRGLPEELKAL 608 (911)
Q Consensus 529 ~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~l~~L 608 (911)
+.+++.+..+++++.|.+++|.++.+|+. +..+.+|++|++++|+++.+|.+++.++.|+.|+++.|++..+|.+|+.+
T Consensus 23 f~~~~gLf~~s~ITrLtLSHNKl~~vppn-ia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~ 101 (264)
T KOG0617|consen 23 FEELPGLFNMSNITRLTLSHNKLTVVPPN-IAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSF 101 (264)
T ss_pred HhhcccccchhhhhhhhcccCceeecCCc-HHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCC
Confidence 45567778889999999999999999988 67899999999999999999999999999999999999999999999999
Q ss_pred CcCcEEecCCCcccc-ccChhhhccCccCcEEEecCCCCCcccccCCCcccccCcccchhhhcCCCCCcEEEEEecCchh
Q 002538 609 INLKCLNLDQTKFLV-TIPRHLISSFSMLHVLRMFGSGSSVFHEASGDSILFDGGELLADELLGLKYLEVLDITLRSRHA 687 (911)
Q Consensus 609 ~~L~~L~L~~~~~l~-~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~ 687 (911)
+-|+.||+.+|+.-. .+|-+ +-.|+.|+-|++..|.+. ..+...+.|++|+.|.+..+...+
T Consensus 102 p~levldltynnl~e~~lpgn-ff~m~tlralyl~dndfe----------------~lp~dvg~lt~lqil~lrdndll~ 164 (264)
T KOG0617|consen 102 PALEVLDLTYNNLNENSLPGN-FFYMTTLRALYLGDNDFE----------------ILPPDVGKLTNLQILSLRDNDLLS 164 (264)
T ss_pred chhhhhhccccccccccCCcc-hhHHHHHHHHHhcCCCcc----------------cCChhhhhhcceeEEeeccCchhh
Confidence 999999999987433 45654 667889999999988764 678889999999999987665544
Q ss_pred hHhhhhcccccCcceEEEeeeccCCCceeecccccccccceEeeccc
Q 002538 688 LQSVLSSHKLRSCTQAIFLQCFKDSKSIYAAALADLKHLKKLCISQC 734 (911)
Q Consensus 688 ~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 734 (911)
++. .++.+..|++|+|.++
T Consensus 165 lpk----------------------------eig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 165 LPK----------------------------EIGDLTRLRELHIQGN 183 (264)
T ss_pred CcH----------------------------HHHHHHHHHHHhcccc
Confidence 432 4556778888888876
No 22
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.30 E-value=1e-13 Score=141.70 Aligned_cols=296 Identities=19% Similarity=0.183 Sum_probs=161.7
Q ss_pred EEEcCCCcccCCCCCCcccceEEEeecCCcccCCC--CCCCCCccEEEcccCcccccChhhhccCCCCcEEEccC-CCCc
Q 002538 500 LVYAGTGLAVAPGVEGWEKVKRLLLMKNHIKHLPD--IPTCPHLLTLFLSHNQLRWISEDFFQFMPSLKVLNLSF-TKRH 576 (911)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~-~~~~ 576 (911)
+...+.++..+|.. -......+.+..|.|+.+|+ |..+++||.|+|++|.++.|.+..|++++.|-.|-+-+ |+|+
T Consensus 51 VdCr~~GL~eVP~~-LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~ 129 (498)
T KOG4237|consen 51 VDCRGKGLTEVPAN-LPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT 129 (498)
T ss_pred EEccCCCcccCccc-CCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh
Confidence 33444455544421 12355667777777777765 67777777777777777777777777777766665544 6777
Q ss_pred ccCc-cccCcCCCCEEeccCCCcCCc-chhhhccCcCcEEecCCCccccccChhhhccCccCcEEEecCCCCCcccccCC
Q 002538 577 KFPS-GISKLASLQLIDLSYTSIRGL-PEELKALINLKCLNLDQTKFLVTIPRHLISSFSMLHVLRMFGSGSSVFHEASG 654 (911)
Q Consensus 577 ~lp~-~i~~l~~L~~L~L~~~~i~~l-p~~l~~L~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~ 654 (911)
.+|. .|+.|..|+.|.+.-|++..+ ...+..|++|..|.+.+|. +..++.+.+..+..++.+.+-.|.+.....+++
T Consensus 130 ~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~w 208 (498)
T KOG4237|consen 130 DLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQNPFICDCNLPW 208 (498)
T ss_pred hhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchh-hhhhccccccchhccchHhhhcCccccccccch
Confidence 7764 456777777777777777663 3456777777777777775 566776556777777777766655432222222
Q ss_pred CcccccCcccchhhhcCCCCCcEEEEEecCchhhHhhhhcccccCcceEE--Ee-eeccCCCceeecccccccccceEee
Q 002538 655 DSILFDGGELLADELLGLKYLEVLDITLRSRHALQSVLSSHKLRSCTQAI--FL-QCFKDSKSIYAAALADLKHLKKLCI 731 (911)
Q Consensus 655 ~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L--~l-~~~~~~~~~~~~~l~~l~~L~~L~l 731 (911)
.... ....+.+++..+-.....+........ ....+..+++.+ .+ +.|......+...|..+++|++|++
T Consensus 209 la~~---~a~~~ietsgarc~~p~rl~~~Ri~q~----~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnl 281 (498)
T KOG4237|consen 209 LADD---LAMNPIETSGARCVSPYRLYYKRINQE----DARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNL 281 (498)
T ss_pred hhhH---HhhchhhcccceecchHHHHHHHhccc----chhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEecc
Confidence 1100 000111111111100000000000000 000011111111 00 1111122223335778889999999
Q ss_pred ccccccceeEecccCccccccccccCCccCEEEEecCCCCCCCcc--cccCCCcceEeEecccccccccccCcchhhhhh
Q 002538 732 SQCEELEELKIDCTGEVKRMCQPYIFRSLNKVQIYSCPVLKDLTF--LVFAPNLKSIDVRSCSVMKEIVSAGKSADIAEM 809 (911)
Q Consensus 732 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~~--l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~ 809 (911)
+++ .++.+...|+. ....++.|.|..+ +++.+.. +.++.+|+.|+|.+ +.++.+..
T Consensus 282 snN-~i~~i~~~aFe---------~~a~l~eL~L~~N-~l~~v~~~~f~~ls~L~tL~L~~-N~it~~~~---------- 339 (498)
T KOG4237|consen 282 SNN-KITRIEDGAFE---------GAAELQELYLTRN-KLEFVSSGMFQGLSGLKTLSLYD-NQITTVAP---------- 339 (498)
T ss_pred CCC-ccchhhhhhhc---------chhhhhhhhcCcc-hHHHHHHHhhhccccceeeeecC-CeeEEEec----------
Confidence 865 55555555554 2667888888777 5666543 56788888888888 44555422
Q ss_pred cCCCCcccccceeccccc
Q 002538 810 MGNMSPFAKLQNLQLVRL 827 (911)
Q Consensus 810 ~~~~~~~p~L~~L~L~~~ 827 (911)
..+....+|.+|.|-..
T Consensus 340 -~aF~~~~~l~~l~l~~N 356 (498)
T KOG4237|consen 340 -GAFQTLFSLSTLNLLSN 356 (498)
T ss_pred -ccccccceeeeeehccC
Confidence 24555666666666443
No 23
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.29 E-value=1.3e-13 Score=141.05 Aligned_cols=285 Identities=17% Similarity=0.193 Sum_probs=178.1
Q ss_pred ecCCcccCCCCCCCCCccEEEcccCcccccChhhhccCCCCcEEEccCCCCccc-CccccCcCCCCEEeccC-CCcCCcc
Q 002538 525 MKNHIKHLPDIPTCPHLLTLFLSHNQLRWISEDFFQFMPSLKVLNLSFTKRHKF-PSGISKLASLQLIDLSY-TSIRGLP 602 (911)
Q Consensus 525 ~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~l-p~~i~~l~~L~~L~L~~-~~i~~lp 602 (911)
++..+.++|. .-.+.-..+.|..|.++.+|+..|+.+++||.||||+|.|+.+ |+.|..+..|-.|-+.+ |+|+++|
T Consensus 54 r~~GL~eVP~-~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~ 132 (498)
T KOG4237|consen 54 RGKGLTEVPA-NLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLP 132 (498)
T ss_pred cCCCcccCcc-cCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhh
Confidence 3344555553 1124667889999999999999999999999999999999998 89999999988887777 8999999
Q ss_pred hh-hhccCcCcEEecCCCccccccChhhhccCccCcEEEecCCCCCcccccCCCcccccCcccchhhhcCCCCCcEEEEE
Q 002538 603 EE-LKALINLKCLNLDQTKFLVTIPRHLISSFSMLHVLRMFGSGSSVFHEASGDSILFDGGELLADELLGLKYLEVLDIT 681 (911)
Q Consensus 603 ~~-l~~L~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~ 681 (911)
+. |+.|..|+.|.+.-|. +..++.+.+..|++|..|.++.|.+. ...-..+..+..++.+.+.
T Consensus 133 k~~F~gL~slqrLllNan~-i~Cir~~al~dL~~l~lLslyDn~~q---------------~i~~~tf~~l~~i~tlhlA 196 (498)
T KOG4237|consen 133 KGAFGGLSSLQRLLLNANH-INCIRQDALRDLPSLSLLSLYDNKIQ---------------SICKGTFQGLAAIKTLHLA 196 (498)
T ss_pred hhHhhhHHHHHHHhcChhh-hcchhHHHHHHhhhcchhcccchhhh---------------hhccccccchhccchHhhh
Confidence 76 7899999999999887 78888888999999999999988754 1222356667777777665
Q ss_pred ecCchhhHh------hhh----cccccCcceEEEeeeccCCCceeecccccccccceE--e-eccccccceeEecccCcc
Q 002538 682 LRSRHALQS------VLS----SHKLRSCTQAIFLQCFKDSKSIYAAALADLKHLKKL--C-ISQCEELEELKIDCTGEV 748 (911)
Q Consensus 682 ~~~~~~~~~------~~~----~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L--~-l~~~~~l~~l~~~~~~~~ 748 (911)
.+.....-. ... ......+.....+.+. ....++...+ ..+++.+ . .+.|.-....+...+
T Consensus 197 ~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~-Ri~q~~a~kf--~c~~esl~s~~~~~d~~d~~cP~~cf--- 270 (498)
T KOG4237|consen 197 QNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYK-RINQEDARKF--LCSLESLPSRLSSEDFPDSICPAKCF--- 270 (498)
T ss_pred cCccccccccchhhhHHhhchhhcccceecchHHHHHH-Hhcccchhhh--hhhHHhHHHhhccccCcCCcChHHHH---
Confidence 444221100 000 0000001000000000 0001110000 0111111 0 011111110011111
Q ss_pred ccccccccCCccCEEEEecCCCCCCCc--ccccCCCcceEeEecccccccccccCcchhhhhhcCCCCcccccceecccc
Q 002538 749 KRMCQPYIFRSLNKVQIYSCPVLKDLT--FLVFAPNLKSIDVRSCSVMKEIVSAGKSADIAEMMGNMSPFAKLQNLQLVR 826 (911)
Q Consensus 749 ~~~~~~~~~~~L~~L~L~~c~~l~~l~--~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~ 826 (911)
..+++|++|+|+++ +++.+. ++.++..|++|.|.. ++++.+-. ..+.++..|+.|+|.+
T Consensus 271 ------~~L~~L~~lnlsnN-~i~~i~~~aFe~~a~l~eL~L~~-N~l~~v~~-----------~~f~~ls~L~tL~L~~ 331 (498)
T KOG4237|consen 271 ------KKLPNLRKLNLSNN-KITRIEDGAFEGAAELQELYLTR-NKLEFVSS-----------GMFQGLSGLKTLSLYD 331 (498)
T ss_pred ------hhcccceEeccCCC-ccchhhhhhhcchhhhhhhhcCc-chHHHHHH-----------HhhhccccceeeeecC
Confidence 34788888888887 566653 477888888888887 45655522 2566788888888888
Q ss_pred ccccccc-cCCcccCCccceEeccccc
Q 002538 827 LQNLKSI-YWKLVPFPHLKEIIVHQCN 852 (911)
Q Consensus 827 ~~~L~~~-~~~~~~~p~L~~L~i~~C~ 852 (911)
. +++.+ +..+..+.+|.+|.+-..|
T Consensus 332 N-~it~~~~~aF~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 332 N-QITTVAPGAFQTLFSLSTLNLLSNP 357 (498)
T ss_pred C-eeEEEecccccccceeeeeehccCc
Confidence 4 45544 3445566777777765433
No 24
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.23 E-value=5.8e-10 Score=139.87 Aligned_cols=288 Identities=14% Similarity=0.149 Sum_probs=174.3
Q ss_pred ccchHHHHHHHHHHhcc-CCceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCC-ccChHHHHHHHHHHcCC
Q 002538 158 VKGLESTLEDVWRCLVE-ESAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSK-DLQIEKNQEIIGKKIGL 235 (911)
Q Consensus 158 ~~Gr~~~~~~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~ 235 (911)
++-|..-.+.+ .. ...+++.|.|++|.||||++....... . .++|+++.. +.+.......++..++.
T Consensus 16 ~~~R~rl~~~l----~~~~~~~~~~v~apaG~GKTtl~~~~~~~~----~---~~~w~~l~~~d~~~~~f~~~l~~~l~~ 84 (903)
T PRK04841 16 TVVRERLLAKL----SGANNYRLVLVTSPAGYGKTTLISQWAAGK----N---NLGWYSLDESDNQPERFASYLIAALQQ 84 (903)
T ss_pred cCcchHHHHHH----hcccCCCeEEEECCCCCCHHHHHHHHHHhC----C---CeEEEecCcccCCHHHHHHHHHHHHHH
Confidence 34666444443 33 367899999999999999999987542 2 599999864 44666666666666632
Q ss_pred CCCc-----------cCCCCHHHHHHHHHHHhh--cceEEEEEcccccccc--cccccCC-CCCCCCCCCcEEEEEcCch
Q 002538 236 FDDS-----------WKNKNLDERALEIFKILR--EKKFVLLLDDIWERVN--LNKVGVP-LPSPQSTTASKVVFTTRFI 299 (911)
Q Consensus 236 ~~~~-----------~~~~~~~~~~~~l~~~L~--~k~~LlVlDdv~~~~~--~~~~~~~-l~~~~~~~gs~IivTtR~~ 299 (911)
.... ....+.......+...+. +.+++|||||+...++ ..+.... +. ....+.++|||||..
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~--~~~~~~~lv~~sR~~ 162 (903)
T PRK04841 85 ATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLR--HQPENLTLVVLSRNL 162 (903)
T ss_pred hcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHH--hCCCCeEEEEEeCCC
Confidence 1110 011223334444444443 6789999999965421 1111111 11 223467888999974
Q ss_pred hhhh--ccC-CcceEEcc----CCCHHHHHHHHHHHhCCcccCCCccHHHHHHHHHHHhCCcchHHHHHHhhhccCCCHH
Q 002538 300 NVCG--SME-AHRNFKVE----CLTEKHAWELFQMKVGEETLKSHPHVFELAQVVAKECGGLPLALITIGRAMAYKKTRE 372 (911)
Q Consensus 300 ~v~~--~~~-~~~~~~l~----~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~g~~l~~~~~~~ 372 (911)
.-.. .+. .....++. +|+.+|+.++|....+..- -.+...+|.+.|+|.|+++..++..+.......
T Consensus 163 ~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~------~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~~ 236 (903)
T PRK04841 163 PPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSPI------EAAESSRLCDDVEGWATALQLIALSARQNNSSL 236 (903)
T ss_pred CCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCCC------CHHHHHHHHHHhCChHHHHHHHHHHHhhCCCch
Confidence 3221 111 12244555 9999999999987655321 235678899999999999999887765432100
Q ss_pred HHHHHHHHHHhcccccCCCchhhcccccc-ccCCCChhhhhHHHHHhhcCCCCcccChHHHHHHHHhcCCccCCcccccc
Q 002538 373 EWKYAIEVLRRSTFELAGLEKEVYPLLKF-SYDCLPNDIIRSCFLYCCLYPEDWNTFKRNLIDCWIGEGFLEENDRFGAH 451 (911)
Q Consensus 373 ~w~~~~~~l~~~~~~~~~~~~~i~~~l~~-sy~~L~~~~~k~cfl~~~~fp~~~~i~~~~li~~w~aeg~i~~~~~~~~~ 451 (911)
......+.. .....+...+.- .++.||+ ..+..+...|+++. ++.+ +.. .+.. .
T Consensus 237 --~~~~~~~~~------~~~~~~~~~l~~~v~~~l~~-~~~~~l~~~a~~~~---~~~~-l~~-----~l~~-------~ 291 (903)
T PRK04841 237 --HDSARRLAG------INASHLSDYLVEEVLDNVDL-ETRHFLLRCSVLRS---MNDA-LIV-----RVTG-------E 291 (903)
T ss_pred --hhhhHhhcC------CCchhHHHHHHHHHHhcCCH-HHHHHHHHhccccc---CCHH-HHH-----HHcC-------C
Confidence 000111100 001123333322 3679999 79999999999872 3322 222 1111 2
Q ss_pred hhHhHHHHHHHHhhcccc-c--CCCceehhHHHHHHHHHHH
Q 002538 452 NQGYYIVGTLVHACLLEE-V--EDDKVKMHDVIRDMALWIA 489 (911)
Q Consensus 452 ~~~~~~l~~L~~~~ll~~-~--~~~~~~mHdlv~d~a~~i~ 489 (911)
+.+...+++|.+.+++.. . ....|+.|++++++.+...
T Consensus 292 ~~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 292 ENGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRC 332 (903)
T ss_pred CcHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHH
Confidence 345678999999999653 2 3357899999999988764
No 25
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.20 E-value=1.5e-09 Score=121.81 Aligned_cols=294 Identities=15% Similarity=0.090 Sum_probs=169.0
Q ss_pred ccccchHHHHHHHHHHhcc----CCceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCccChHHHHHHHHH
Q 002538 156 AIVKGLESTLEDVWRCLVE----ESAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDLQIEKNQEIIGK 231 (911)
Q Consensus 156 ~~~~Gr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 231 (911)
+.++||+++++++...+.+ .....+.|+|++|+|||++++.++++. ......-.++++.+....+...++..++.
T Consensus 30 ~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l-~~~~~~~~~v~in~~~~~~~~~~~~~i~~ 108 (394)
T PRK00411 30 ENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEEL-EEIAVKVVYVYINCQIDRTRYAIFSEIAR 108 (394)
T ss_pred CCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHH-HHhcCCcEEEEEECCcCCCHHHHHHHHHH
Confidence 4577999999999888743 345678899999999999999999987 22222345677777777778888999999
Q ss_pred HcCCCCCccCCCCHHHHHHHHHHHhh--cceEEEEEccccccc------ccccccCCCCCCCCCCCcE--EEEEcCchhh
Q 002538 232 KIGLFDDSWKNKNLDERALEIFKILR--EKKFVLLLDDIWERV------NLNKVGVPLPSPQSTTASK--VVFTTRFINV 301 (911)
Q Consensus 232 ~l~~~~~~~~~~~~~~~~~~l~~~L~--~k~~LlVlDdv~~~~------~~~~~~~~l~~~~~~~gs~--IivTtR~~~v 301 (911)
++..........+.++....+.+.+. ++..+||||+++... .+..+.... ....+++ ||.++....+
T Consensus 109 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~---~~~~~~~v~vI~i~~~~~~ 185 (394)
T PRK00411 109 QLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAH---EEYPGARIGVIGISSDLTF 185 (394)
T ss_pred HhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhh---hccCCCeEEEEEEECCcch
Confidence 88652211133456777777777775 456899999998642 122222211 1122333 5666665544
Q ss_pred hhccC-------CcceEEccCCCHHHHHHHHHHHhCCc---ccCCCccHHHHHHHHHHHhCCcchHHHHHHhhhc----c
Q 002538 302 CGSME-------AHRNFKVECLTEKHAWELFQMKVGEE---TLKSHPHVFELAQVVAKECGGLPLALITIGRAMA----Y 367 (911)
Q Consensus 302 ~~~~~-------~~~~~~l~~L~~~es~~Lf~~~a~~~---~~~~~~~~~~~~~~i~~~c~GlPLai~~~g~~l~----~ 367 (911)
..... ....+.+.|++.++..+++..++... ..-.+..++.+++......|..+.|+.++-.+.. .
T Consensus 186 ~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~ 265 (394)
T PRK00411 186 LYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAERE 265 (394)
T ss_pred hhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHc
Confidence 33221 12467899999999999998876321 1111222233333333334667788877644321 1
Q ss_pred C---CCHHHHHHHHHHHHhcccccCCCchhhccccccccCCCChhhhhHHHHHhh-cCCC-CcccChHHHHHH--HHhcC
Q 002538 368 K---KTREEWKYAIEVLRRSTFELAGLEKEVYPLLKFSYDCLPNDIIRSCFLYCC-LYPE-DWNTFKRNLIDC--WIGEG 440 (911)
Q Consensus 368 ~---~~~~~w~~~~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl~~~-~fp~-~~~i~~~~li~~--w~aeg 440 (911)
+ -+.+....+.+.+.. ....-.+..||. +.|..+..++ .... ...+....+... .+++.
T Consensus 266 ~~~~I~~~~v~~a~~~~~~-------------~~~~~~~~~L~~-~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~ 331 (394)
T PRK00411 266 GSRKVTEEDVRKAYEKSEI-------------VHLSEVLRTLPL-HEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEE 331 (394)
T ss_pred CCCCcCHHHHHHHHHHHHH-------------HHHHHHHhcCCH-HHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHH
Confidence 1 145566655554421 112335678888 5444333322 1111 123444444422 11111
Q ss_pred CccCCcccccchhHhHHHHHHHHhhccccc
Q 002538 441 FLEENDRFGAHNQGYYIVGTLVHACLLEEV 470 (911)
Q Consensus 441 ~i~~~~~~~~~~~~~~~l~~L~~~~ll~~~ 470 (911)
+-. ..-......+|++.|...++|+..
T Consensus 332 ~~~---~~~~~~~~~~~l~~L~~~glI~~~ 358 (394)
T PRK00411 332 LGY---EPRTHTRFYEYINKLDMLGIINTR 358 (394)
T ss_pred cCC---CcCcHHHHHHHHHHHHhcCCeEEE
Confidence 100 001124456678888888887753
No 26
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.14 E-value=6.3e-09 Score=110.28 Aligned_cols=184 Identities=13% Similarity=0.191 Sum_probs=115.7
Q ss_pred cCCceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCccChHHHHHHHHHHcCCCCCccCCCCHHHHHHHHH
Q 002538 174 EESAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDLQIEKNQEIIGKKIGLFDDSWKNKNLDERALEIF 253 (911)
Q Consensus 174 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 253 (911)
....+++.|+|++|+||||+++.+++.. .. ... .++|+ +....+..+++..|+..++.+.. ..+.......+.
T Consensus 40 ~~~~~~~~l~G~~G~GKTtl~~~l~~~l-~~-~~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~---~~~~~~~~~~l~ 112 (269)
T TIGR03015 40 SQREGFILITGEVGAGKTTLIRNLLKRL-DQ-ERV-VAAKL-VNTRVDAEDLLRMVAADFGLETE---GRDKAALLRELE 112 (269)
T ss_pred hcCCCEEEEEcCCCCCHHHHHHHHHHhc-CC-CCe-EEeee-eCCCCCHHHHHHHHHHHcCCCCC---CCCHHHHHHHHH
Confidence 3455689999999999999999999986 21 221 23343 33345777888999998877542 233333334443
Q ss_pred HHh-----hcceEEEEEccccccc--ccccccCCCCC-CCCCCCcEEEEEcCchhhhhccC----------CcceEEccC
Q 002538 254 KIL-----REKKFVLLLDDIWERV--NLNKVGVPLPS-PQSTTASKVVFTTRFINVCGSME----------AHRNFKVEC 315 (911)
Q Consensus 254 ~~L-----~~k~~LlVlDdv~~~~--~~~~~~~~l~~-~~~~~gs~IivTtR~~~v~~~~~----------~~~~~~l~~ 315 (911)
+.+ .+++.+||+||++... .++.+...... .+......|++|... .....+. ....+++.+
T Consensus 113 ~~l~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~-~~~~~l~~~~~~~l~~r~~~~~~l~~ 191 (269)
T TIGR03015 113 DFLIEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQP-EFRETLQSPQLQQLRQRIIASCHLGP 191 (269)
T ss_pred HHHHHHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCH-HHHHHHcCchhHHHHhheeeeeeCCC
Confidence 332 5788999999998753 33333211110 012223345566543 2221111 134578999
Q ss_pred CCHHHHHHHHHHHhCCcccCCC-ccHHHHHHHHHHHhCCcchHHHHHHhhh
Q 002538 316 LTEKHAWELFQMKVGEETLKSH-PHVFELAQVVAKECGGLPLALITIGRAM 365 (911)
Q Consensus 316 L~~~es~~Lf~~~a~~~~~~~~-~~~~~~~~~i~~~c~GlPLai~~~g~~l 365 (911)
++.+|..+++...+........ .--.+..+.|++.|+|.|..|..++..+
T Consensus 192 l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 192 LDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred CCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 9999999999877643221111 2235788999999999999999988765
No 27
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.12 E-value=1.1e-11 Score=135.18 Aligned_cols=84 Identities=29% Similarity=0.271 Sum_probs=38.4
Q ss_pred CCCCccEEEcccCccccc----ChhhhccCCCCcEEEccCCCCcc-------cCccccCcCCCCEEeccCCCcCC-cchh
Q 002538 537 TCPHLLTLFLSHNQLRWI----SEDFFQFMPSLKVLNLSFTKRHK-------FPSGISKLASLQLIDLSYTSIRG-LPEE 604 (911)
Q Consensus 537 ~~~~L~~L~l~~~~l~~~----~~~~~~~l~~L~~L~L~~~~~~~-------lp~~i~~l~~L~~L~L~~~~i~~-lp~~ 604 (911)
.+.+|+.|.++++.++.. ....+...+.|+.|+++++.+.. ++..+..+++|++|++++|.+.. .+..
T Consensus 21 ~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 100 (319)
T cd00116 21 KLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGV 100 (319)
T ss_pred HHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHH
Confidence 334455666655544221 11123344555555555554432 12334445555555555555442 3333
Q ss_pred hhccCc---CcEEecCCCc
Q 002538 605 LKALIN---LKCLNLDQTK 620 (911)
Q Consensus 605 l~~L~~---L~~L~L~~~~ 620 (911)
+..+.+ |++|++++|.
T Consensus 101 ~~~l~~~~~L~~L~ls~~~ 119 (319)
T cd00116 101 LESLLRSSSLQELKLNNNG 119 (319)
T ss_pred HHHHhccCcccEEEeeCCc
Confidence 333333 5555555554
No 28
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.09 E-value=4e-08 Score=109.20 Aligned_cols=296 Identities=13% Similarity=0.075 Sum_probs=168.3
Q ss_pred ccccchHHHHHHHHHHhcc----CCceEEEEEcCCCChHHHHHHHHHhhhccCCCCC---ceEEEEEeCCccChHHHHHH
Q 002538 156 AIVKGLESTLEDVWRCLVE----ESAGIIGLYGMGGVGKTTLLTRINNKFLESPSDF---DCVIWVVVSKDLQIEKNQEI 228 (911)
Q Consensus 156 ~~~~Gr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f---~~~~wv~~s~~~~~~~~~~~ 228 (911)
+.++||++++++|...+.. ...+.+.|+|++|+|||++++.+++...+..... -..+|+.+....+...++..
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~ 94 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVE 94 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHH
Confidence 3567999999999999864 3456889999999999999999998752111111 24677887777777889999
Q ss_pred HHHHcC---CCCCccCCCCHHHHHHHHHHHhh--cceEEEEEccccccc-c----cccccCCCCCCCCC--CCcEEEEEc
Q 002538 229 IGKKIG---LFDDSWKNKNLDERALEIFKILR--EKKFVLLLDDIWERV-N----LNKVGVPLPSPQST--TASKVVFTT 296 (911)
Q Consensus 229 i~~~l~---~~~~~~~~~~~~~~~~~l~~~L~--~k~~LlVlDdv~~~~-~----~~~~~~~l~~~~~~--~gs~IivTt 296 (911)
|+.++. .... ....+..+....+.+.+. +++++||||+++... . +..+..... .... ....+|++|
T Consensus 95 i~~~l~~~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~-~~~~~~~~v~lI~i~ 172 (365)
T TIGR02928 95 LANQLRGSGEEVP-TTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARS-NGDLDNAKVGVIGIS 172 (365)
T ss_pred HHHHHhhcCCCCC-CCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhcccc-ccCCCCCeEEEEEEE
Confidence 999883 2211 122345566666777664 568899999998752 1 112211100 0111 223445555
Q ss_pred CchhhhhccC-------CcceEEccCCCHHHHHHHHHHHhCC--cccCCCccHHHHHHHHHHHhCCcch-HHHHHHhhh-
Q 002538 297 RFINVCGSME-------AHRNFKVECLTEKHAWELFQMKVGE--ETLKSHPHVFELAQVVAKECGGLPL-ALITIGRAM- 365 (911)
Q Consensus 297 R~~~v~~~~~-------~~~~~~l~~L~~~es~~Lf~~~a~~--~~~~~~~~~~~~~~~i~~~c~GlPL-ai~~~g~~l- 365 (911)
........+. ....+.+.|++.++..+++..++.. ......++..+....++..+.|.|- |+.++-.+.
T Consensus 173 n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~ 252 (365)
T TIGR02928 173 NDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGE 252 (365)
T ss_pred CCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 4443322111 1246889999999999999988641 1111223333455566777778885 444432221
Q ss_pred -c--cC---CCHHHHHHHHHHHHhcccccCCCchhhccccccccCCCChhhhhHHHHHhhcC--CCCcccChHHHHHHHH
Q 002538 366 -A--YK---KTREEWKYAIEVLRRSTFELAGLEKEVYPLLKFSYDCLPNDIIRSCFLYCCLY--PEDWNTFKRNLIDCWI 437 (911)
Q Consensus 366 -~--~~---~~~~~w~~~~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl~~~~f--p~~~~i~~~~li~~w~ 437 (911)
. .+ -+.+..+.+.+.+.. ....-++..||. +.+..+..++.. .++..+....+...+-
T Consensus 253 ~a~~~~~~~it~~~v~~a~~~~~~-------------~~~~~~i~~l~~-~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~ 318 (365)
T TIGR02928 253 IAEREGAERVTEDHVEKAQEKIEK-------------DRLLELIRGLPT-HSKLVLLAIANLAANDEDPFRTGEVYEVYK 318 (365)
T ss_pred HHHHcCCCCCCHHHHHHHHHHHHH-------------HHHHHHHHcCCH-HHHHHHHHHHHHHhcCCCCccHHHHHHHHH
Confidence 1 11 234444444444321 112234567887 556444433311 1334455555555331
Q ss_pred --hcCCccCCcccccchhHhHHHHHHHHhhccccc
Q 002538 438 --GEGFLEENDRFGAHNQGYYIVGTLVHACLLEEV 470 (911)
Q Consensus 438 --aeg~i~~~~~~~~~~~~~~~l~~L~~~~ll~~~ 470 (911)
++.+ . -..-.......++..|...+++...
T Consensus 319 ~~~~~~-~--~~~~~~~~~~~~l~~l~~~gli~~~ 350 (365)
T TIGR02928 319 EVCEDI-G--VDPLTQRRISDLLNELDMLGLVEAE 350 (365)
T ss_pred HHHHhc-C--CCCCcHHHHHHHHHHHHhcCCeEEE
Confidence 1211 1 0112345666778888888888764
No 29
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.09 E-value=5.9e-10 Score=115.60 Aligned_cols=195 Identities=19% Similarity=0.191 Sum_probs=103.0
Q ss_pred ccchHHHHHHHHHHhccCCceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCccChHHHHHH---------
Q 002538 158 VKGLESTLEDVWRCLVEESAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDLQIEKNQEI--------- 228 (911)
Q Consensus 158 ~~Gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~--------- 228 (911)
++||++++++|.+++..+..+.+.|+|+.|+|||+|++.+.+.. +..-..++|+..............
T Consensus 1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~---~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~ 77 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINEL---KEKGYKVVYIDFLEESNESSLRSFIEETSLADE 77 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHC---T--EECCCHHCCTTBSHHHHHHHHHHHHHHHCH
T ss_pred CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHh---hhcCCcEEEEecccchhhhHHHHHHHHHHHHHH
Confidence 46999999999999987778899999999999999999999986 221123445544333322211111
Q ss_pred ----HHHHcCCCCC-c---cCCCCHHHHHHHHHHHhh--cceEEEEEccccccc-ccc----------cccCCCCCCCCC
Q 002538 229 ----IGKKIGLFDD-S---WKNKNLDERALEIFKILR--EKKFVLLLDDIWERV-NLN----------KVGVPLPSPQST 287 (911)
Q Consensus 229 ----i~~~l~~~~~-~---~~~~~~~~~~~~l~~~L~--~k~~LlVlDdv~~~~-~~~----------~~~~~l~~~~~~ 287 (911)
+...+..... . ............+.+.+. +++.+||+||+.... ... .+..... ...
T Consensus 78 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~ 155 (234)
T PF01637_consen 78 LSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLL--SQQ 155 (234)
T ss_dssp CHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH------T
T ss_pred HHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhcc--ccC
Confidence 2111111000 0 011222333444444443 356999999997655 111 1111111 223
Q ss_pred CCcEEEEEcCchhhhhc--------cCCcceEEccCCCHHHHHHHHHHHhCCcccCCCccHHHHHHHHHHHhCCcchHHH
Q 002538 288 TASKVVFTTRFINVCGS--------MEAHRNFKVECLTEKHAWELFQMKVGEETLKSHPHVFELAQVVAKECGGLPLALI 359 (911)
Q Consensus 288 ~gs~IivTtR~~~v~~~--------~~~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~GlPLai~ 359 (911)
+.+ +|+++........ .+....+.+++|+.+++++++...+... ..- +.-.+..++|+..+||+|..|.
T Consensus 156 ~~~-~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~~~-~~~~~~~~~i~~~~gG~P~~l~ 232 (234)
T PF01637_consen 156 NVS-IVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-IKL-PFSDEDIEEIYSLTGGNPRYLQ 232 (234)
T ss_dssp TEE-EEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC--------HHHHHHHHHHHTT-HHHHH
T ss_pred Cce-EEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-hcc-cCCHHHHHHHHHHhCCCHHHHh
Confidence 334 4455444444332 2233458999999999999999876433 111 2234566999999999998875
Q ss_pred H
Q 002538 360 T 360 (911)
Q Consensus 360 ~ 360 (911)
-
T Consensus 233 ~ 233 (234)
T PF01637_consen 233 E 233 (234)
T ss_dssp H
T ss_pred c
Confidence 4
No 30
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.06 E-value=7.2e-11 Score=128.86 Aligned_cols=265 Identities=17% Similarity=0.096 Sum_probs=117.3
Q ss_pred hhccCCCCcEEEccCCCCc-----ccCccccCcCCCCEEeccCCCcCC-------cchhhhccCcCcEEecCCCcccccc
Q 002538 558 FFQFMPSLKVLNLSFTKRH-----KFPSGISKLASLQLIDLSYTSIRG-------LPEELKALINLKCLNLDQTKFLVTI 625 (911)
Q Consensus 558 ~~~~l~~L~~L~L~~~~~~-----~lp~~i~~l~~L~~L~L~~~~i~~-------lp~~l~~L~~L~~L~L~~~~~l~~l 625 (911)
.+..+.+|++|+++++.++ .++..+...++|++|+++++.+.. ++..+.++++|+.|++++|......
T Consensus 18 ~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 97 (319)
T cd00116 18 LLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDG 97 (319)
T ss_pred HHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhH
Confidence 3455555666666666552 234445555556666666654441 2334555566666666666532222
Q ss_pred ChhhhccCcc---CcEEEecCCCCCcccccCCCcccccCcccchhhhcCC-CCCcEEEEEecCch--hhHhhhhcccccC
Q 002538 626 PRHLISSFSM---LHVLRMFGSGSSVFHEASGDSILFDGGELLADELLGL-KYLEVLDITLRSRH--ALQSVLSSHKLRS 699 (911)
Q Consensus 626 p~~~i~~l~~---L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L-~~L~~L~l~~~~~~--~~~~~~~~~~~~~ 699 (911)
+.. +..+.+ |++|++++|.... .........+..+ ++|+.|+++.+... ....+........
T Consensus 98 ~~~-~~~l~~~~~L~~L~ls~~~~~~-----------~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~ 165 (319)
T cd00116 98 CGV-LESLLRSSSLQELKLNNNGLGD-----------RGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANR 165 (319)
T ss_pred HHH-HHHHhccCcccEEEeeCCccch-----------HHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCC
Confidence 222 333333 6666666654330 0001122334444 56666666655543 1112222222234
Q ss_pred cceEEEeeeccCCCce-e--ecccccccccceEeeccccccceeEecccCccccccccccCCccCEEEEecCCCCCCCc-
Q 002538 700 CTQAIFLQCFKDSKSI-Y--AAALADLKHLKKLCISQCEELEELKIDCTGEVKRMCQPYIFRSLNKVQIYSCPVLKDLT- 775 (911)
Q Consensus 700 ~l~~L~l~~~~~~~~~-~--~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~- 775 (911)
.++.|+++++.-.... . ...+..+++|+.|++++|.. ......... .....+++|+.|++++| .+++..
T Consensus 166 ~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i-~~~~~~~l~-----~~~~~~~~L~~L~ls~n-~l~~~~~ 238 (319)
T cd00116 166 DLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGL-TDEGASALA-----ETLASLKSLEVLNLGDN-NLTDAGA 238 (319)
T ss_pred CcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCcc-ChHHHHHHH-----HHhcccCCCCEEecCCC-cCchHHH
Confidence 5666666554321110 0 01223344666666666532 111110000 00123566677777666 333311
Q ss_pred -cc-c----cCCCcceEeEecccccccccccCcchhhhhhcCCCCcccccceeccccccccccc-----cCCcccC-Ccc
Q 002538 776 -FL-V----FAPNLKSIDVRSCSVMKEIVSAGKSADIAEMMGNMSPFAKLQNLQLVRLQNLKSI-----YWKLVPF-PHL 843 (911)
Q Consensus 776 -~l-~----~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~~-----~~~~~~~-p~L 843 (911)
.+ . ..+.|+.|++++|. +++... ..+......+++|+.|+++++ .+... ......+ +.|
T Consensus 239 ~~l~~~~~~~~~~L~~L~l~~n~-i~~~~~-------~~l~~~~~~~~~L~~l~l~~N-~l~~~~~~~~~~~~~~~~~~~ 309 (319)
T cd00116 239 AALASALLSPNISLLTLSLSCND-ITDDGA-------KDLAEVLAEKESLLELDLRGN-KFGEEGAQLLAESLLEPGNEL 309 (319)
T ss_pred HHHHHHHhccCCCceEEEccCCC-CCcHHH-------HHHHHHHhcCCCccEEECCCC-CCcHHHHHHHHHHHhhcCCch
Confidence 11 1 13567777777653 221000 011112334466777777664 23322 1122223 566
Q ss_pred ceEeccc
Q 002538 844 KEIIVHQ 850 (911)
Q Consensus 844 ~~L~i~~ 850 (911)
++|+|.+
T Consensus 310 ~~~~~~~ 316 (319)
T cd00116 310 ESLWVKD 316 (319)
T ss_pred hhcccCC
Confidence 6666654
No 31
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.05 E-value=2.3e-10 Score=109.54 Aligned_cols=125 Identities=29% Similarity=0.337 Sum_probs=44.1
Q ss_pred CcccceEEEeecCCcccCCCCC-CCCCccEEEcccCcccccChhhhccCCCCcEEEccCCCCcccCccc-cCcCCCCEEe
Q 002538 515 GWEKVKRLLLMKNHIKHLPDIP-TCPHLLTLFLSHNQLRWISEDFFQFMPSLKVLNLSFTKRHKFPSGI-SKLASLQLID 592 (911)
Q Consensus 515 ~~~~l~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~i-~~l~~L~~L~ 592 (911)
+..+++.|++.+|.+..+..+. .+.+|++|++++|.++.+.. +..++.|++|++++|.++.+++.+ ..+++|+.|+
T Consensus 17 n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~--l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEG--LPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELY 94 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS--S--TT------TT--EEE--SS---S-CHHHHHH-TT--EEE
T ss_pred cccccccccccccccccccchhhhhcCCCEEECCCCCCccccC--ccChhhhhhcccCCCCCCccccchHHhCCcCCEEE
Confidence 3346677777777777776665 46777777777777766653 566777777777777777776554 3577777777
Q ss_pred ccCCCcCCcc--hhhhccCcCcEEecCCCccccccC---hhhhccCccCcEEEec
Q 002538 593 LSYTSIRGLP--EELKALINLKCLNLDQTKFLVTIP---RHLISSFSMLHVLRMF 642 (911)
Q Consensus 593 L~~~~i~~lp--~~l~~L~~L~~L~L~~~~~l~~lp---~~~i~~l~~L~~L~l~ 642 (911)
+++|+|.++- ..+..+++|+.|++.+|+. ...+ ..++..+++|+.|+-.
T Consensus 95 L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv-~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 95 LSNNKISDLNELEPLSSLPKLRVLSLEGNPV-CEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp -TTS---SCCCCGGGGG-TT--EEE-TT-GG-GGSTTHHHHHHHH-TT-SEETTE
T ss_pred CcCCcCCChHHhHHHHcCCCcceeeccCCcc-cchhhHHHHHHHHcChhheeCCE
Confidence 7777766632 3456677777777777763 3333 2345667777777644
No 32
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.02 E-value=1.1e-08 Score=110.42 Aligned_cols=272 Identities=16% Similarity=0.103 Sum_probs=151.0
Q ss_pred cccchHHHHHHHHHHhcc-----CCceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCccChHHHHHHHHH
Q 002538 157 IVKGLESTLEDVWRCLVE-----ESAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDLQIEKNQEIIGK 231 (911)
Q Consensus 157 ~~~Gr~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 231 (911)
.|+|+++.++.+..++.. .....+.++|++|+|||+||+.+++.. ...+ ..+..+.......+ ...+.
T Consensus 5 ~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~---~~~~---~~~~~~~~~~~~~l-~~~l~ 77 (305)
T TIGR00635 5 EFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEM---GVNL---KITSGPALEKPGDL-AAILT 77 (305)
T ss_pred HHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHh---CCCE---EEeccchhcCchhH-HHHHH
Confidence 467999999999888862 345678899999999999999999986 2222 12222111122222 22222
Q ss_pred HcCCCC----CccCCCCHHHHHHHHHHHhhcceEEEEEcccccccccccccCCCCCCCCCCCcEEEEEcCchhhhhccC-
Q 002538 232 KIGLFD----DSWKNKNLDERALEIFKILREKKFVLLLDDIWERVNLNKVGVPLPSPQSTTASKVVFTTRFINVCGSME- 306 (911)
Q Consensus 232 ~l~~~~----~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~~~~~~~~~l~~~~~~~gs~IivTtR~~~v~~~~~- 306 (911)
.++... ++.+..+ ....+.+...+.+.+..+|+|+..+...+.. .++ ..+-|..||+...+...+.
T Consensus 78 ~~~~~~vl~iDEi~~l~-~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~---~~~-----~~~li~~t~~~~~l~~~l~s 148 (305)
T TIGR00635 78 NLEEGDVLFIDEIHRLS-PAVEELLYPAMEDFRLDIVIGKGPSARSVRL---DLP-----PFTLVGATTRAGMLTSPLRD 148 (305)
T ss_pred hcccCCEEEEehHhhhC-HHHHHHhhHHHhhhheeeeeccCccccceee---cCC-----CeEEEEecCCccccCHHHHh
Confidence 332211 0001111 1234456666777777778877655544431 122 2455666777654433211
Q ss_pred -CcceEEccCCCHHHHHHHHHHHhCCcccCCCccHHHHHHHHHHHhCCcchHHHHHHhhhccCCCHHHHHHHHHHHHhcc
Q 002538 307 -AHRNFKVECLTEKHAWELFQMKVGEETLKSHPHVFELAQVVAKECGGLPLALITIGRAMAYKKTREEWKYAIEVLRRST 385 (911)
Q Consensus 307 -~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~g~~l~~~~~~~~w~~~~~~l~~~~ 385 (911)
....+++.+++.++..+++.+.+...... --.+....|++.|+|.|-.+..++..+ |..+. ..+...
T Consensus 149 R~~~~~~l~~l~~~e~~~il~~~~~~~~~~---~~~~al~~ia~~~~G~pR~~~~ll~~~--------~~~a~-~~~~~~ 216 (305)
T TIGR00635 149 RFGIILRLEFYTVEELAEIVSRSAGLLNVE---IEPEAALEIARRSRGTPRIANRLLRRV--------RDFAQ-VRGQKI 216 (305)
T ss_pred hcceEEEeCCCCHHHHHHHHHHHHHHhCCC---cCHHHHHHHHHHhCCCcchHHHHHHHH--------HHHHH-HcCCCC
Confidence 13467999999999999999887643311 224677889999999997665554332 11110 000000
Q ss_pred cccCCCchhhccccccccCCCChhhhhHHHH-HhhcCCCCcccChHHHHHHHHhcCCccCCcccccchhHhHHHH-HHHH
Q 002538 386 FELAGLEKEVYPLLKFSYDCLPNDIIRSCFL-YCCLYPEDWNTFKRNLIDCWIGEGFLEENDRFGAHNQGYYIVG-TLVH 463 (911)
Q Consensus 386 ~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl-~~~~fp~~~~i~~~~li~~w~aeg~i~~~~~~~~~~~~~~~l~-~L~~ 463 (911)
-.. ..-......+...|..+++ +.+..+. ..+.++.+ ....+.+.... | .....+...++ .|++
T Consensus 217 it~-~~v~~~l~~l~~~~~~l~~-~~~~~L~al~~~~~~~-~~~~~~ia~~l---g--------~~~~~~~~~~e~~Li~ 282 (305)
T TIGR00635 217 INR-DIALKALEMLMIDELGLDE-IDRKLLSVLIEQFQGG-PVGLKTLAAAL---G--------EDADTIEDVYEPYLLQ 282 (305)
T ss_pred cCH-HHHHHHHHHhCCCCCCCCH-HHHHHHHHHHHHhCCC-cccHHHHHHHh---C--------CCcchHHHhhhHHHHH
Confidence 000 0001222235667888888 5555444 44556533 34443333221 1 23445566677 6999
Q ss_pred hhccccc
Q 002538 464 ACLLEEV 470 (911)
Q Consensus 464 ~~ll~~~ 470 (911)
++|++..
T Consensus 283 ~~li~~~ 289 (305)
T TIGR00635 283 IGFLQRT 289 (305)
T ss_pred cCCcccC
Confidence 9999765
No 33
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.94 E-value=1.5e-08 Score=110.08 Aligned_cols=273 Identities=14% Similarity=0.088 Sum_probs=149.7
Q ss_pred ccccchHHHHHHHHHHhcc-----CCceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCccChHHHHHHHH
Q 002538 156 AIVKGLESTLEDVWRCLVE-----ESAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDLQIEKNQEIIG 230 (911)
Q Consensus 156 ~~~~Gr~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 230 (911)
..++|+++.++.+..++.. ...+.+.|+|++|+||||+|+.+++.. . ..+ .++..+ .......+..+.
T Consensus 25 ~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l-~--~~~---~~~~~~-~~~~~~~l~~~l 97 (328)
T PRK00080 25 DEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEM-G--VNI---RITSGP-ALEKPGDLAAIL 97 (328)
T ss_pred HHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHh-C--CCe---EEEecc-cccChHHHHHHH
Confidence 3467999999988777752 345678899999999999999999987 2 222 112211 111122223333
Q ss_pred HHcCCCC----CccCCCCHHHHHHHHHHHhhcceEEEEEcccccccccccccCCCCCCCCCCCcEEEEEcCchhhhhccC
Q 002538 231 KKIGLFD----DSWKNKNLDERALEIFKILREKKFVLLLDDIWERVNLNKVGVPLPSPQSTTASKVVFTTRFINVCGSME 306 (911)
Q Consensus 231 ~~l~~~~----~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~~~~~~~~~l~~~~~~~gs~IivTtR~~~v~~~~~ 306 (911)
..+.... ++.+..+ ....+.+...+.+.+..+|+|+..+...+.. .++ ..+-|..|+|...+...+.
T Consensus 98 ~~l~~~~vl~IDEi~~l~-~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~---~l~-----~~~li~at~~~~~l~~~L~ 168 (328)
T PRK00080 98 TNLEEGDVLFIDEIHRLS-PVVEEILYPAMEDFRLDIMIGKGPAARSIRL---DLP-----PFTLIGATTRAGLLTSPLR 168 (328)
T ss_pred HhcccCCEEEEecHhhcc-hHHHHHHHHHHHhcceeeeeccCccccceee---cCC-----CceEEeecCCcccCCHHHH
Confidence 3332111 0001001 1223344555666666677766544332211 112 2345666777554433221
Q ss_pred --CcceEEccCCCHHHHHHHHHHHhCCcccCCCccHHHHHHHHHHHhCCcchHHHHHHhhhccCCCHHHHHHHHHHHHhc
Q 002538 307 --AHRNFKVECLTEKHAWELFQMKVGEETLKSHPHVFELAQVVAKECGGLPLALITIGRAMAYKKTREEWKYAIEVLRRS 384 (911)
Q Consensus 307 --~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~g~~l~~~~~~~~w~~~~~~l~~~ 384 (911)
....+++.+++.++..+++.+.+....... -.+....|++.|+|.|-.+..+...+ ..|.... ...
T Consensus 169 sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~~---~~~~~~~ia~~~~G~pR~a~~~l~~~------~~~a~~~---~~~ 236 (328)
T PRK00080 169 DRFGIVQRLEFYTVEELEKIVKRSARILGVEI---DEEGALEIARRSRGTPRIANRLLRRV------RDFAQVK---GDG 236 (328)
T ss_pred HhcCeeeecCCCCHHHHHHHHHHHHHHcCCCc---CHHHHHHHHHHcCCCchHHHHHHHHH------HHHHHHc---CCC
Confidence 124689999999999999998876543222 24678999999999996554444322 1221110 000
Q ss_pred ccccCCCchhhccccccccCCCChhhhhHHHH-HhhcCCCCcccChHHHHHHHHhcCCccCCcccccchhHhHHHH-HHH
Q 002538 385 TFELAGLEKEVYPLLKFSYDCLPNDIIRSCFL-YCCLYPEDWNTFKRNLIDCWIGEGFLEENDRFGAHNQGYYIVG-TLV 462 (911)
Q Consensus 385 ~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl-~~~~fp~~~~i~~~~li~~w~aeg~i~~~~~~~~~~~~~~~l~-~L~ 462 (911)
.-. ...-......+...|..|++ ..+..+. ....|+.+ .+..+.+.... | ...+.+++.++ .|+
T Consensus 237 ~I~-~~~v~~~l~~~~~~~~~l~~-~~~~~l~~~~~~~~~~-~~~~~~~a~~l---g--------~~~~~~~~~~e~~Li 302 (328)
T PRK00080 237 VIT-KEIADKALDMLGVDELGLDE-MDRKYLRTIIEKFGGG-PVGLDTLAAAL---G--------EERDTIEDVYEPYLI 302 (328)
T ss_pred CCC-HHHHHHHHHHhCCCcCCCCH-HHHHHHHHHHHHcCCC-ceeHHHHHHHH---C--------CCcchHHHHhhHHHH
Confidence 000 00011334556677888887 4455453 66667655 35444443222 1 22344444566 789
Q ss_pred Hhhccccc
Q 002538 463 HACLLEEV 470 (911)
Q Consensus 463 ~~~ll~~~ 470 (911)
+.+|++..
T Consensus 303 ~~~li~~~ 310 (328)
T PRK00080 303 QQGFIQRT 310 (328)
T ss_pred HcCCcccC
Confidence 99998765
No 34
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.94 E-value=4.3e-11 Score=123.97 Aligned_cols=81 Identities=23% Similarity=0.080 Sum_probs=34.5
Q ss_pred CccEEEcccCccccc--ChhhhccCCCCcEEEccCCC-Cccc--CccccCcCCCCEEeccCC-CcCC--cchhhhccCcC
Q 002538 540 HLLTLFLSHNQLRWI--SEDFFQFMPSLKVLNLSFTK-RHKF--PSGISKLASLQLIDLSYT-SIRG--LPEELKALINL 611 (911)
Q Consensus 540 ~L~~L~l~~~~l~~~--~~~~~~~l~~L~~L~L~~~~-~~~l--p~~i~~l~~L~~L~L~~~-~i~~--lp~~l~~L~~L 611 (911)
.|+.|.+.++.-... ...+-..++++..|++.+|. ++.- -.--..+.+|++|++..| .++. +-.....+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 456666666521111 11223445555555555552 2210 111123455555555553 3333 22223344555
Q ss_pred cEEecCCCc
Q 002538 612 KCLNLDQTK 620 (911)
Q Consensus 612 ~~L~L~~~~ 620 (911)
.+|+++.|.
T Consensus 219 ~~lNlSwc~ 227 (483)
T KOG4341|consen 219 KYLNLSWCP 227 (483)
T ss_pred HHhhhccCc
Confidence 555555554
No 35
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.91 E-value=5.2e-11 Score=127.70 Aligned_cols=168 Identities=24% Similarity=0.316 Sum_probs=120.3
Q ss_pred cceEEEeecCCcccCCC-CCCCCCccEEEcccCcccccChhhhccCCCCcEEEccCCCCcccCccccCcCCCCEEeccCC
Q 002538 518 KVKRLLLMKNHIKHLPD-IPTCPHLLTLFLSHNQLRWISEDFFQFMPSLKVLNLSFTKRHKFPSGISKLASLQLIDLSYT 596 (911)
Q Consensus 518 ~l~~L~l~~~~~~~l~~-~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~ 596 (911)
.....+++.|.+.++|. +..|..|..+.+..|.+..+|.. ++++..|.+|||+.|+++.+|..++.|+ |+.|-+++|
T Consensus 76 dt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~-i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNN 153 (722)
T KOG0532|consen 76 DTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEA-ICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNN 153 (722)
T ss_pred chhhhhccccccccCchHHHHHHHHHHHHHHhccceecchh-hhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecC
Confidence 44556777777777775 56677777888887777777765 5777888888888888888888887776 788888888
Q ss_pred CcCCcchhhhccCcCcEEecCCCccccccChhhhccCccCcEEEecCCCCCcccccCCCcccccCcccchhhhcCCCCCc
Q 002538 597 SIRGLPEELKALINLKCLNLDQTKFLVTIPRHLISSFSMLHVLRMFGSGSSVFHEASGDSILFDGGELLADELLGLKYLE 676 (911)
Q Consensus 597 ~i~~lp~~l~~L~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 676 (911)
+++.+|..++.+..|.+||.+.|. +..+|.. ++.+.+|+.|.+..|.+. ..+.++..|+ |.
T Consensus 154 kl~~lp~~ig~~~tl~~ld~s~ne-i~slpsq-l~~l~slr~l~vrRn~l~----------------~lp~El~~Lp-Li 214 (722)
T KOG0532|consen 154 KLTSLPEEIGLLPTLAHLDVSKNE-IQSLPSQ-LGYLTSLRDLNVRRNHLE----------------DLPEELCSLP-LI 214 (722)
T ss_pred ccccCCcccccchhHHHhhhhhhh-hhhchHH-hhhHHHHHHHHHhhhhhh----------------hCCHHHhCCc-ee
Confidence 888888888877788888888776 6777776 778888888887777654 4666777554 66
Q ss_pred EEEEEecCchhhHhhhhcccccCcceEEEeeec
Q 002538 677 VLDITLRSRHALQSVLSSHKLRSCTQAIFLQCF 709 (911)
Q Consensus 677 ~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~ 709 (911)
.|+++.|.+..++.-.. .++.|+.|-|.++
T Consensus 215 ~lDfScNkis~iPv~fr---~m~~Lq~l~LenN 244 (722)
T KOG0532|consen 215 RLDFSCNKISYLPVDFR---KMRHLQVLQLENN 244 (722)
T ss_pred eeecccCceeecchhhh---hhhhheeeeeccC
Confidence 77777666665543222 2345666666554
No 36
>PF05729 NACHT: NACHT domain
Probab=98.90 E-value=8.6e-09 Score=100.45 Aligned_cols=143 Identities=15% Similarity=0.204 Sum_probs=90.3
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhhccCCCC----CceEEEEEeCCccChH---HHHHHHHHHcCCCCCccCCCCHHHHHH
Q 002538 178 GIIGLYGMGGVGKTTLLTRINNKFLESPSD----FDCVIWVVVSKDLQIE---KNQEIIGKKIGLFDDSWKNKNLDERAL 250 (911)
Q Consensus 178 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~----f~~~~wv~~s~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~~~ 250 (911)
+++.|+|.+|+||||+++.++.+.. .... +...+|+......... .+...+..+..... .....
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-----~~~~~--- 71 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLA-EEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESI-----APIEE--- 71 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHH-hcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccch-----hhhHH---
Confidence 5789999999999999999998873 2222 4567777766554332 34444444433211 11111
Q ss_pred HHHHH-hhcceEEEEEcccccccc---------cccccCCCCCCCCCCCcEEEEEcCchhh---hhccCCcceEEccCCC
Q 002538 251 EIFKI-LREKKFVLLLDDIWERVN---------LNKVGVPLPSPQSTTASKVVFTTRFINV---CGSMEAHRNFKVECLT 317 (911)
Q Consensus 251 ~l~~~-L~~k~~LlVlDdv~~~~~---------~~~~~~~l~~~~~~~gs~IivTtR~~~v---~~~~~~~~~~~l~~L~ 317 (911)
.+... -+.+++++|+|++++... +.++...+.......+.+|+||+|.... .........+++.+|+
T Consensus 72 ~~~~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~ 151 (166)
T PF05729_consen 72 LLQELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFS 151 (166)
T ss_pred HHHHHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCC
Confidence 22222 257899999999986532 1111111110012458999999998776 3334445689999999
Q ss_pred HHHHHHHHHHHh
Q 002538 318 EKHAWELFQMKV 329 (911)
Q Consensus 318 ~~es~~Lf~~~a 329 (911)
+++..+++++..
T Consensus 152 ~~~~~~~~~~~f 163 (166)
T PF05729_consen 152 EEDIKQYLRKYF 163 (166)
T ss_pred HHHHHHHHHHHh
Confidence 999999998764
No 37
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.87 E-value=3.2e-09 Score=101.79 Aligned_cols=119 Identities=28% Similarity=0.348 Sum_probs=58.9
Q ss_pred EEEcCCCcccCCCCC-CcccceEEEeecCCcccCCCCCCCCCccEEEcccCcccccChhhhccCCCCcEEEccCCCCccc
Q 002538 500 LVYAGTGLAVAPGVE-GWEKVKRLLLMKNHIKHLPDIPTCPHLLTLFLSHNQLRWISEDFFQFMPSLKVLNLSFTKRHKF 578 (911)
Q Consensus 500 ~~~~~~~~~~~~~~~-~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~l 578 (911)
+...+..+..+...+ .+.+++.|++++|.+..++.+..+++|++|++++|.++.+.+.+...+++|+.|++++|++..+
T Consensus 24 L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~I~~l 103 (175)
T PF14580_consen 24 LNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNKISDL 103 (175)
T ss_dssp ------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS---SC
T ss_pred ccccccccccccchhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCCcCCCh
Confidence 344455555555555 4678999999999999999999999999999999999998766556799999999999998766
Q ss_pred C--ccccCcCCCCEEeccCCCcCCcch----hhhccCcCcEEecCC
Q 002538 579 P--SGISKLASLQLIDLSYTSIRGLPE----ELKALINLKCLNLDQ 618 (911)
Q Consensus 579 p--~~i~~l~~L~~L~L~~~~i~~lp~----~l~~L~~L~~L~L~~ 618 (911)
- ..+..+++|++|+|.+|.+...+. .+..+++|+.||-..
T Consensus 104 ~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 104 NELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp CCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred HHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence 3 467789999999999998887543 478999999998654
No 38
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.83 E-value=2.7e-07 Score=105.08 Aligned_cols=297 Identities=15% Similarity=0.135 Sum_probs=189.1
Q ss_pred CccccCCccccccchHHHHHHHHHHhccC-CceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCc-cChHH
Q 002538 147 SVADERPTEAIVKGLESTLEDVWRCLVEE-SAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKD-LQIEK 224 (911)
Q Consensus 147 ~~~~~~~~~~~~~Gr~~~~~~l~~~L~~~-~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~-~~~~~ 224 (911)
..+.|.+....+ -|. ++++.|... +.+.+.|..+.|.|||||+.+.... ...-..+.|.+.+.. .++..
T Consensus 11 k~~~P~~~~~~v-~R~----rL~~~L~~~~~~RL~li~APAGfGKttl~aq~~~~----~~~~~~v~Wlslde~dndp~r 81 (894)
T COG2909 11 KLVRPVRPDNYV-VRP----RLLDRLRRANDYRLILISAPAGFGKTTLLAQWREL----AADGAAVAWLSLDESDNDPAR 81 (894)
T ss_pred ccCCCCCccccc-ccH----HHHHHHhcCCCceEEEEeCCCCCcHHHHHHHHHHh----cCcccceeEeecCCccCCHHH
Confidence 333343434444 444 555666554 7899999999999999999999763 244567999998765 46777
Q ss_pred HHHHHHHHcCCCCCc-----------cCCCCHHHHHHHHHHHhhc--ceEEEEEcccccccc------cccccCCCCCCC
Q 002538 225 NQEIIGKKIGLFDDS-----------WKNKNLDERALEIFKILRE--KKFVLLLDDIWERVN------LNKVGVPLPSPQ 285 (911)
Q Consensus 225 ~~~~i~~~l~~~~~~-----------~~~~~~~~~~~~l~~~L~~--k~~LlVlDdv~~~~~------~~~~~~~l~~~~ 285 (911)
....++..++.-.+. ....+...+...+...+.. ++..+||||-.-..+ +..+...
T Consensus 82 F~~yLi~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~----- 156 (894)
T COG2909 82 FLSYLIAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKH----- 156 (894)
T ss_pred HHHHHHHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHh-----
Confidence 777777777632211 1233445556666666653 689999999754321 2333332
Q ss_pred CCCCcEEEEEcCchhhhhccC---CcceEEcc----CCCHHHHHHHHHHHhCCcccCCCccHHHHHHHHHHHhCCcchHH
Q 002538 286 STTASKVVFTTRFINVCGSME---AHRNFKVE----CLTEKHAWELFQMKVGEETLKSHPHVFELAQVVAKECGGLPLAL 358 (911)
Q Consensus 286 ~~~gs~IivTtR~~~v~~~~~---~~~~~~l~----~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~GlPLai 358 (911)
...+-..|||||+..-..... .....++. .++.+|+-++|....+. +--+...+.+.+...|-+-|+
T Consensus 157 ~P~~l~lvv~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l------~Ld~~~~~~L~~~teGW~~al 230 (894)
T COG2909 157 APENLTLVVTSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSL------PLDAADLKALYDRTEGWAAAL 230 (894)
T ss_pred CCCCeEEEEEeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCC------CCChHHHHHHHhhcccHHHHH
Confidence 335778999999766532211 12223333 58899999999887532 222456788899999999999
Q ss_pred HHHHhhhccCCCHHHHHHHHHHHHhcccccCCCchhhccc-cccccCCCChhhhhHHHHHhhcCCCCcccChHHHHHHHH
Q 002538 359 ITIGRAMAYKKTREEWKYAIEVLRRSTFELAGLEKEVYPL-LKFSYDCLPNDIIRSCFLYCCLYPEDWNTFKRNLIDCWI 437 (911)
Q Consensus 359 ~~~g~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~i~~~-l~~sy~~L~~~~~k~cfl~~~~fp~~~~i~~~~li~~w~ 437 (911)
..++=.++.+.+.+.--..++ +..+-+..- ..=-++.||+ .++..++-||+++.-. +.|+..-
T Consensus 231 ~L~aLa~~~~~~~~q~~~~Ls----------G~~~~l~dYL~eeVld~Lp~-~l~~FLl~~svl~~f~----~eL~~~L- 294 (894)
T COG2909 231 QLIALALRNNTSAEQSLRGLS----------GAASHLSDYLVEEVLDRLPP-ELRDFLLQTSVLSRFN----DELCNAL- 294 (894)
T ss_pred HHHHHHccCCCcHHHHhhhcc----------chHHHHHHHHHHHHHhcCCH-HHHHHHHHHHhHHHhh----HHHHHHH-
Confidence 988877763333332221111 110111110 1112568999 7999999999986432 2333322
Q ss_pred hcCCccCCcccccchhHhHHHHHHHHhhccccc---CCCceehhHHHHHHHHHHHH
Q 002538 438 GEGFLEENDRFGAHNQGYYIVGTLVHACLLEEV---EDDKVKMHDVIRDMALWIAS 490 (911)
Q Consensus 438 aeg~i~~~~~~~~~~~~~~~l~~L~~~~ll~~~---~~~~~~mHdlv~d~a~~i~~ 490 (911)
..++.+..++++|.+++|+-.. ....|+.|.++.||.+....
T Consensus 295 -----------tg~~ng~amLe~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~ 339 (894)
T COG2909 295 -----------TGEENGQAMLEELERRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQ 339 (894)
T ss_pred -----------hcCCcHHHHHHHHHhCCCceeeecCCCceeehhHHHHHHHHhhhc
Confidence 3356778889999999998754 67889999999999876543
No 39
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=1.2e-09 Score=114.09 Aligned_cols=211 Identities=18% Similarity=0.159 Sum_probs=103.5
Q ss_pred CCCCCccEEEcccCcccccCh-hhhccCCCCcEEEccCCCCccc---CccccCcCCCCEEeccCCCcCCcchh--hhccC
Q 002538 536 PTCPHLLTLFLSHNQLRWISE-DFFQFMPSLKVLNLSFTKRHKF---PSGISKLASLQLIDLSYTSIRGLPEE--LKALI 609 (911)
Q Consensus 536 ~~~~~L~~L~l~~~~l~~~~~-~~~~~l~~L~~L~L~~~~~~~l---p~~i~~l~~L~~L~L~~~~i~~lp~~--l~~L~ 609 (911)
+++++|+...|.++.....+. ...+.|++++.|||+.|-+... -.-...|++|+.|+|+.|++...-.+ -..+.
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 556667777776665543332 2345566666666666644322 23334566666666666654432111 12344
Q ss_pred cCcEEecCCCccccccChhhhccCccCcEEEecCCCCCcccccCCCcccccCcccchhhhcCCCCCcEEEEEecCchhhH
Q 002538 610 NLKCLNLDQTKFLVTIPRHLISSFSMLHVLRMFGSGSSVFHEASGDSILFDGGELLADELLGLKYLEVLDITLRSRHALQ 689 (911)
Q Consensus 610 ~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~ 689 (911)
+|+.|.+++|.....--......+++|..|++..|... ......-.-
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~---------------~~~~~~~~i------------------ 244 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEII---------------LIKATSTKI------------------ 244 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhccccc---------------ceecchhhh------------------
Confidence 55555555554221111111334455555555554211 000111112
Q ss_pred hhhhcccccCcceEEEeeeccCCCceeecccccccccceEeeccccccceeEecccCccccccccccCCccCEEEEecCC
Q 002538 690 SVLSSHKLRSCTQAIFLQCFKDSKSIYAAALADLKHLKKLCISQCEELEELKIDCTGEVKRMCQPYIFRSLNKVQIYSCP 769 (911)
Q Consensus 690 ~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~ 769 (911)
...|+.|+|+++..++.-.....+.++.|..|+++.| ++.++.. .+ .........|++|+.|.+..++
T Consensus 245 --------~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~t-gi~si~~--~d-~~s~~kt~~f~kL~~L~i~~N~ 312 (505)
T KOG3207|consen 245 --------LQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSST-GIASIAE--PD-VESLDKTHTFPKLEYLNISENN 312 (505)
T ss_pred --------hhHHhhccccCCcccccccccccccccchhhhhcccc-CcchhcC--CC-ccchhhhcccccceeeecccCc
Confidence 2345555555554444433345666777777777765 3332211 00 0001112458888888888874
Q ss_pred C--CCCCcccccCCCcceEeEecc
Q 002538 770 V--LKDLTFLVFAPNLKSIDVRSC 791 (911)
Q Consensus 770 ~--l~~l~~l~~l~~L~~L~L~~c 791 (911)
- +..+..+..+++|+.|.+..+
T Consensus 313 I~~w~sl~~l~~l~nlk~l~~~~n 336 (505)
T KOG3207|consen 313 IRDWRSLNHLRTLENLKHLRITLN 336 (505)
T ss_pred cccccccchhhccchhhhhhcccc
Confidence 3 333333455677777776553
No 40
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.79 E-value=3.7e-08 Score=102.77 Aligned_cols=168 Identities=20% Similarity=0.182 Sum_probs=103.9
Q ss_pred cccccchHHHHHHHHHHhccCCceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCccChHHHHHHHHHHcC
Q 002538 155 EAIVKGLESTLEDVWRCLVEESAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDLQIEKNQEIIGKKIG 234 (911)
Q Consensus 155 ~~~~~Gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 234 (911)
..+++|.+..+.++ +..+.+.-+.+||++|+||||||+.+.+.. ...|. .+|-..+-.+
T Consensus 29 Q~HLlg~~~~lrr~---v~~~~l~SmIl~GPPG~GKTTlA~liA~~~---~~~f~-----~~sAv~~gvk---------- 87 (436)
T COG2256 29 QEHLLGEGKPLRRA---VEAGHLHSMILWGPPGTGKTTLARLIAGTT---NAAFE-----ALSAVTSGVK---------- 87 (436)
T ss_pred hHhhhCCCchHHHH---HhcCCCceeEEECCCCCCHHHHHHHHHHhh---CCceE-----EeccccccHH----------
Confidence 33444555444444 445788888899999999999999999976 44553 2222221111
Q ss_pred CCCCccCCCCHHHHHHHHH-HHhhcceEEEEEccccccc-ccccccCCCCCCCCCCCcEEEE--EcCchhhh---hccCC
Q 002538 235 LFDDSWKNKNLDERALEIF-KILREKKFVLLLDDIWERV-NLNKVGVPLPSPQSTTASKVVF--TTRFINVC---GSMEA 307 (911)
Q Consensus 235 ~~~~~~~~~~~~~~~~~l~-~~L~~k~~LlVlDdv~~~~-~~~~~~~~l~~~~~~~gs~Iiv--TtR~~~v~---~~~~~ 307 (911)
+..+..+.-+ ....|++.+|.+|.|.... .-++.. +| ...+|.-|+| ||.++... ...+.
T Consensus 88 ---------dlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~l--Lp--~vE~G~iilIGATTENPsF~ln~ALlSR 154 (436)
T COG2256 88 ---------DLREIIEEARKNRLLGRRTILFLDEIHRFNKAQQDAL--LP--HVENGTIILIGATTENPSFELNPALLSR 154 (436)
T ss_pred ---------HHHHHHHHHHHHHhcCCceEEEEehhhhcChhhhhhh--hh--hhcCCeEEEEeccCCCCCeeecHHHhhh
Confidence 2222222222 2335899999999997542 223333 33 4456777777 77777652 22345
Q ss_pred cceEEccCCCHHHHHHHHHHHhCCcccC---CCccH-HHHHHHHHHHhCCcch
Q 002538 308 HRNFKVECLTEKHAWELFQMKVGEETLK---SHPHV-FELAQVVAKECGGLPL 356 (911)
Q Consensus 308 ~~~~~l~~L~~~es~~Lf~~~a~~~~~~---~~~~~-~~~~~~i~~~c~GlPL 356 (911)
..++.+++|+.++-.+++.+.+...... ....+ ++.-.-+++.++|---
T Consensus 155 ~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R 207 (436)
T COG2256 155 ARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDAR 207 (436)
T ss_pred hheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHH
Confidence 6799999999999999999854322211 11222 3466778888888644
No 41
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.74 E-value=7.1e-10 Score=119.17 Aligned_cols=170 Identities=25% Similarity=0.315 Sum_probs=85.9
Q ss_pred ceEEEeecCCcccCCC-CCCCCCccEEEcccCcccccChhhhccCCCCcEEEccCCCCcccCccccCcCCCCEEeccCCC
Q 002538 519 VKRLLLMKNHIKHLPD-IPTCPHLLTLFLSHNQLRWISEDFFQFMPSLKVLNLSFTKRHKFPSGISKLASLQLIDLSYTS 597 (911)
Q Consensus 519 l~~L~l~~~~~~~l~~-~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~ 597 (911)
+..+.+..|.+..+|. +.++..|..|+++.|.+..+|.. ++.| -|++|-+++|+++.+|+.++.+.+|..||.+.|.
T Consensus 100 Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~-lC~l-pLkvli~sNNkl~~lp~~ig~~~tl~~ld~s~ne 177 (722)
T KOG0532|consen 100 LESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDG-LCDL-PLKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNE 177 (722)
T ss_pred HHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChh-hhcC-cceeEEEecCccccCCcccccchhHHHhhhhhhh
Confidence 3334444444444443 45555555555555555555544 2322 2555555555555555555555555555555555
Q ss_pred cCCcchhhhccCcCcEEecCCCccccccChhhhccCccCcEEEecCCCCCcccccCCCcccccCcccchhhhcCCCCCcE
Q 002538 598 IRGLPEELKALINLKCLNLDQTKFLVTIPRHLISSFSMLHVLRMFGSGSSVFHEASGDSILFDGGELLADELLGLKYLEV 677 (911)
Q Consensus 598 i~~lp~~l~~L~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~ 677 (911)
+..+|..++.+.+|+.|+++.|. +..+|.. .. .-.|..|+++.|++. ..+-.+..|++|++
T Consensus 178 i~slpsql~~l~slr~l~vrRn~-l~~lp~E-l~-~LpLi~lDfScNkis----------------~iPv~fr~m~~Lq~ 238 (722)
T KOG0532|consen 178 IQSLPSQLGYLTSLRDLNVRRNH-LEDLPEE-LC-SLPLIRLDFSCNKIS----------------YLPVDFRKMRHLQV 238 (722)
T ss_pred hhhchHHhhhHHHHHHHHHhhhh-hhhCCHH-Hh-CCceeeeecccCcee----------------ecchhhhhhhhhee
Confidence 55555555555555555555554 4455554 33 223555555555443 34455555555555
Q ss_pred EEEEecCchhhHhhhhcccccCcceEEEeeec
Q 002538 678 LDITLRSRHALQSVLSSHKLRSCTQAIFLQCF 709 (911)
Q Consensus 678 L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~ 709 (911)
|-+.+|...+-++-........-.++|+...|
T Consensus 239 l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 239 LQLENNPLQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred eeeccCCCCCChHHHHhccceeeeeeecchhc
Confidence 55555555444433333222233344444444
No 42
>PRK06893 DNA replication initiation factor; Validated
Probab=98.71 E-value=5.4e-08 Score=99.55 Aligned_cols=150 Identities=14% Similarity=0.175 Sum_probs=91.7
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCccChHHHHHHHHHHcCCCCCccCCCCHHHHHHHHHHH
Q 002538 176 SAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDLQIEKNQEIIGKKIGLFDDSWKNKNLDERALEIFKI 255 (911)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 255 (911)
..+.+.++|.+|+|||+|++++++... .....+.|+++.... ... ..+.+.
T Consensus 38 ~~~~l~l~G~~G~GKThL~~ai~~~~~---~~~~~~~y~~~~~~~---~~~-----------------------~~~~~~ 88 (229)
T PRK06893 38 QQPFFYIWGGKSSGKSHLLKAVSNHYL---LNQRTAIYIPLSKSQ---YFS-----------------------PAVLEN 88 (229)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCCeEEeeHHHhh---hhh-----------------------HHHHhh
Confidence 446789999999999999999999872 223345677653110 000 011111
Q ss_pred hhcceEEEEEcccccc---ccccc-ccCCCCCCCCCCCcEEE-EEcCc---------hhhhhccCCcceEEccCCCHHHH
Q 002538 256 LREKKFVLLLDDIWER---VNLNK-VGVPLPSPQSTTASKVV-FTTRF---------INVCGSMEAHRNFKVECLTEKHA 321 (911)
Q Consensus 256 L~~k~~LlVlDdv~~~---~~~~~-~~~~l~~~~~~~gs~Ii-vTtR~---------~~v~~~~~~~~~~~l~~L~~~es 321 (911)
++ +.-+|||||+|.. ..|+. +...+.. ....|+.|| +|++. +++...+.....+++++++.++.
T Consensus 89 ~~-~~dlLilDDi~~~~~~~~~~~~l~~l~n~-~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~ 166 (229)
T PRK06893 89 LE-QQDLVCLDDLQAVIGNEEWELAIFDLFNR-IKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQK 166 (229)
T ss_pred cc-cCCEEEEeChhhhcCChHHHHHHHHHHHH-HHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHH
Confidence 21 2348999999864 33442 2222210 112355554 45543 35555556667899999999999
Q ss_pred HHHHHHHhCCcccCCCccHHHHHHHHHHHhCCcchHHH
Q 002538 322 WELFQMKVGEETLKSHPHVFELAQVVAKECGGLPLALI 359 (911)
Q Consensus 322 ~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~GlPLai~ 359 (911)
++++++++...... --++...-|++.+.|..-++.
T Consensus 167 ~~iL~~~a~~~~l~---l~~~v~~~L~~~~~~d~r~l~ 201 (229)
T PRK06893 167 IIVLQRNAYQRGIE---LSDEVANFLLKRLDRDMHTLF 201 (229)
T ss_pred HHHHHHHHHHcCCC---CCHHHHHHHHHhccCCHHHHH
Confidence 99999988643321 224677778888877655443
No 43
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.70 E-value=2.1e-09 Score=106.42 Aligned_cols=131 Identities=24% Similarity=0.405 Sum_probs=112.0
Q ss_pred CCCcccceEEEeecCCcccCCC-CCCCCCccEEEcccCcccccChhhhccCCCCcEEEccCCCCcccCccccCcCCCCEE
Q 002538 513 VEGWEKVKRLLLMKNHIKHLPD-IPTCPHLLTLFLSHNQLRWISEDFFQFMPSLKVLNLSFTKRHKFPSGISKLASLQLI 591 (911)
Q Consensus 513 ~~~~~~l~~L~l~~~~~~~l~~-~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L 591 (911)
+..|+.+..+++++|.+..+.+ ..-.|++|.|++++|.+..+.. +..+++|+.||||+|.+.++-..-.+|-|.++|
T Consensus 280 ~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n--La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL 357 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN--LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTL 357 (490)
T ss_pred cchHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh--hhhcccceEeecccchhHhhhhhHhhhcCEeee
Confidence 4568889999999999988865 4667999999999999877755 678999999999999998887666788899999
Q ss_pred eccCCCcCCcchhhhccCcCcEEecCCCccccccCh-hhhccCccCcEEEecCCCCC
Q 002538 592 DLSYTSIRGLPEELKALINLKCLNLDQTKFLVTIPR-HLISSFSMLHVLRMFGSGSS 647 (911)
Q Consensus 592 ~L~~~~i~~lp~~l~~L~~L~~L~L~~~~~l~~lp~-~~i~~l~~L~~L~l~~~~~~ 647 (911)
.|++|.+..+ +++++|.+|..||+++|+ +..+.. .-|++++.|++|.+.+|.+.
T Consensus 358 ~La~N~iE~L-SGL~KLYSLvnLDl~~N~-Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 358 KLAQNKIETL-SGLRKLYSLVNLDLSSNQ-IEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred ehhhhhHhhh-hhhHhhhhheeccccccc-hhhHHHhcccccccHHHHHhhcCCCcc
Confidence 9999999988 589999999999999997 555542 12899999999999999875
No 44
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.69 E-value=4.8e-10 Score=116.32 Aligned_cols=285 Identities=16% Similarity=0.170 Sum_probs=147.8
Q ss_pred cceEEEeecCCcccCCC----CCCCCCccEEEcccC-cccccC-hhhhccCCCCcEEEccCC-CCccc-C-ccccCcCCC
Q 002538 518 KVKRLLLMKNHIKHLPD----IPTCPHLLTLFLSHN-QLRWIS-EDFFQFMPSLKVLNLSFT-KRHKF-P-SGISKLASL 588 (911)
Q Consensus 518 ~l~~L~l~~~~~~~l~~----~~~~~~L~~L~l~~~-~l~~~~-~~~~~~l~~L~~L~L~~~-~~~~l-p-~~i~~l~~L 588 (911)
.++.|++.+..-..... ...|+++..|.+.+| .++... .++-..+++|++|++..| .++.. - .-...+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 46667776654332221 367788888877777 332221 122345778888888775 44432 1 123457778
Q ss_pred CEEeccCC-CcCC--cchhhhccCcCcEEecCCCccccccChhhhc----cCccCcEEEecCCCCCcccccCCCcccccC
Q 002538 589 QLIDLSYT-SIRG--LPEELKALINLKCLNLDQTKFLVTIPRHLIS----SFSMLHVLRMFGSGSSVFHEASGDSILFDG 661 (911)
Q Consensus 589 ~~L~L~~~-~i~~--lp~~l~~L~~L~~L~L~~~~~l~~lp~~~i~----~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 661 (911)
.+|+++.| .|+. +-.-....++|+.+.++||.. .+...+. .+.-+-.+++..|...
T Consensus 219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e---~~le~l~~~~~~~~~i~~lnl~~c~~l-------------- 281 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLE---LELEALLKAAAYCLEILKLNLQHCNQL-------------- 281 (483)
T ss_pred HHhhhccCchhhcCcchHHhccchhhhhhhhccccc---ccHHHHHHHhccChHhhccchhhhccc--------------
Confidence 88888877 4544 333345555566666666632 2222121 2222333333333211
Q ss_pred cccchhhhcCCCCCcEEEEEecCchhhHhhhhcccccCcceEEEeeeccCCCceeeccc-ccccccceEeecccccccee
Q 002538 662 GELLADELLGLKYLEVLDITLRSRHALQSVLSSHKLRSCTQAIFLQCFKDSKSIYAAAL-ADLKHLKKLCISQCEELEEL 740 (911)
Q Consensus 662 ~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~l~~l 740 (911)
+ -..+.........++.|..+++.+.+......+ .++++|+.|.+++|..+...
T Consensus 282 -------------------T------D~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~ 336 (483)
T KOG4341|consen 282 -------------------T------DEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDR 336 (483)
T ss_pred -------------------c------chHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhh
Confidence 0 011111111223344444445544444333222 34567777777777666544
Q ss_pred EecccCccccccccccCCccCEEEEecCCCCCCCcc---cccCCCcceEeEecccccccccccCcchhhhhhcCCCCccc
Q 002538 741 KIDCTGEVKRMCQPYIFRSLNKVQIYSCPVLKDLTF---LVFAPNLKSIDVRSCSVMKEIVSAGKSADIAEMMGNMSPFA 817 (911)
Q Consensus 741 ~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~~---l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~p 817 (911)
....++ .+++.|+.+++.+|....+-.. -.++|.|+.|.+++|..+++... ..+.....+..
T Consensus 337 ~ft~l~--------rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi-------~~l~~~~c~~~ 401 (483)
T KOG4341|consen 337 GFTMLG--------RNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGI-------RHLSSSSCSLE 401 (483)
T ss_pred hhhhhh--------cCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhh-------hhhhhcccccc
Confidence 333333 3467777777777754444311 23567777777777776655411 01112334566
Q ss_pred ccceeccccccccccccC-CcccCCccceEeccccccccCCCC
Q 002538 818 KLQNLQLVRLQNLKSIYW-KLVPFPHLKEIIVHQCNWLKKLPL 859 (911)
Q Consensus 818 ~L~~L~L~~~~~L~~~~~-~~~~~p~L~~L~i~~C~~L~~lP~ 859 (911)
.|+.|.|.+||.++.-.. ....+++|+.+++.+|...++=|.
T Consensus 402 ~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i 444 (483)
T KOG4341|consen 402 GLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAI 444 (483)
T ss_pred ccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhh
Confidence 677777777776554322 233467777777777766665444
No 45
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=4.8e-09 Score=109.67 Aligned_cols=159 Identities=18% Similarity=0.150 Sum_probs=116.4
Q ss_pred CcccceEEEeecCCcccCC---CCCCCCCccEEEcccCccccc--ChhhhccCCCCcEEEccCCCCcccCccc--cCcCC
Q 002538 515 GWEKVKRLLLMKNHIKHLP---DIPTCPHLLTLFLSHNQLRWI--SEDFFQFMPSLKVLNLSFTKRHKFPSGI--SKLAS 587 (911)
Q Consensus 515 ~~~~l~~L~l~~~~~~~l~---~~~~~~~L~~L~l~~~~l~~~--~~~~~~~l~~L~~L~L~~~~~~~lp~~i--~~l~~ 587 (911)
++++++.+++.+......+ ....|++++.|+|++|-+..+ ...+...+++|+.|+|+.|.+....++. ..+.+
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 4568888888888776655 368899999999999955433 2345678999999999999876553332 46789
Q ss_pred CCEEeccCCCcCC--cchhhhccCcCcEEecCCCccccccChhhhccCccCcEEEecCCCCCcccccCCCcccccCcccc
Q 002538 588 LQLIDLSYTSIRG--LPEELKALINLKCLNLDQTKFLVTIPRHLISSFSMLHVLRMFGSGSSVFHEASGDSILFDGGELL 665 (911)
Q Consensus 588 L~~L~L~~~~i~~--lp~~l~~L~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 665 (911)
|+.|.|+.|.++. +-.....+++|+.|++.+|..+..-... ..-++.|+.|++++|.+. +...
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~-~~i~~~L~~LdLs~N~li--------------~~~~ 263 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATS-TKILQTLQELDLSNNNLI--------------DFDQ 263 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecch-hhhhhHHhhccccCCccc--------------cccc
Confidence 9999999998885 5555677899999999998532222221 456778999999999876 2233
Q ss_pred hhhhcCCCCCcEEEEEecCchhh
Q 002538 666 ADELLGLKYLEVLDITLRSRHAL 688 (911)
Q Consensus 666 ~~~l~~L~~L~~L~l~~~~~~~~ 688 (911)
....+.++.|+.|+++.++..++
T Consensus 264 ~~~~~~l~~L~~Lnls~tgi~si 286 (505)
T KOG3207|consen 264 GYKVGTLPGLNQLNLSSTGIASI 286 (505)
T ss_pred ccccccccchhhhhccccCcchh
Confidence 45567888888888876665543
No 46
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.58 E-value=3.5e-07 Score=94.10 Aligned_cols=168 Identities=14% Similarity=0.110 Sum_probs=100.4
Q ss_pred hHHHHHHHHHHhccCCceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCccChHHHHHHHHHHcCCCCCcc
Q 002538 161 LESTLEDVWRCLVEESAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDLQIEKNQEIIGKKIGLFDDSW 240 (911)
Q Consensus 161 r~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~ 240 (911)
.+..++.+.+++.......+.|+|..|+|||+||+.+++.. .......++++++.-.+ ..
T Consensus 22 ~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~---~~~~~~~~~i~~~~~~~------~~----------- 81 (226)
T TIGR03420 22 NAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAA---EERGKSAIYLPLAELAQ------AD----------- 81 (226)
T ss_pred cHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHH---HhcCCcEEEEeHHHHHH------hH-----------
Confidence 44566777777655667789999999999999999999886 22333456665433211 00
Q ss_pred CCCCHHHHHHHHHHHhhcceEEEEEccccccc---ccc-cccCCCCCCCCCCCcEEEEEcCchhh---------hhccCC
Q 002538 241 KNKNLDERALEIFKILREKKFVLLLDDIWERV---NLN-KVGVPLPSPQSTTASKVVFTTRFINV---------CGSMEA 307 (911)
Q Consensus 241 ~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~---~~~-~~~~~l~~~~~~~gs~IivTtR~~~v---------~~~~~~ 307 (911)
..+...+.+ .-+||+||++... .|. .+...+.. ....+.+||+||+.... ...+..
T Consensus 82 ---------~~~~~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~-~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~ 150 (226)
T TIGR03420 82 ---------PEVLEGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNR-VREAGGRLLIAGRAAPAQLPLRLPDLRTRLAW 150 (226)
T ss_pred ---------HHHHhhccc-CCEEEEeChhhhcCChHHHHHHHHHHHH-HHHcCCeEEEECCCChHHCCcccHHHHHHHhc
Confidence 011112222 2389999997643 222 23222210 01234578998875332 222222
Q ss_pred cceEEccCCCHHHHHHHHHHHhCCcccCCCccHHHHHHHHHHHhCCcchHHHHHH
Q 002538 308 HRNFKVECLTEKHAWELFQMKVGEETLKSHPHVFELAQVVAKECGGLPLALITIG 362 (911)
Q Consensus 308 ~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~g 362 (911)
...+++.+++.++...++...+..... +--.+..+.+++.++|.|..+.-+.
T Consensus 151 ~~~i~l~~l~~~e~~~~l~~~~~~~~~---~~~~~~l~~L~~~~~gn~r~L~~~l 202 (226)
T TIGR03420 151 GLVFQLPPLSDEEKIAALQSRAARRGL---QLPDEVADYLLRHGSRDMGSLMALL 202 (226)
T ss_pred CeeEecCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHhccCCHHHHHHHH
Confidence 457899999999999998775432221 1223566777778888887665544
No 47
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.54 E-value=6.9e-06 Score=94.57 Aligned_cols=204 Identities=15% Similarity=0.126 Sum_probs=121.8
Q ss_pred ccccchHHHHHHHHHHhcc----C-CceEEEEEcCCCChHHHHHHHHHhhhccC--CCCCc--eEEEEEeCCccChHHHH
Q 002538 156 AIVKGLESTLEDVWRCLVE----E-SAGIIGLYGMGGVGKTTLLTRINNKFLES--PSDFD--CVIWVVVSKDLQIEKNQ 226 (911)
Q Consensus 156 ~~~~Gr~~~~~~l~~~L~~----~-~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~~f~--~~~wv~~s~~~~~~~~~ 226 (911)
+.+.||++++++|...|.. . ...++.|+|.+|.|||+.++.|.+..... ..... .+++|.+..-.+...++
T Consensus 755 D~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIY 834 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAY 834 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHH
Confidence 3467999999999888864 2 23578899999999999999998775211 11222 36777777767888899
Q ss_pred HHHHHHcCCCCCccCCCCHHHHHHHHHHHhh---cceEEEEEcccccccc-----cccccCCCCCCCCCCCcEEEE--Ec
Q 002538 227 EIIGKKIGLFDDSWKNKNLDERALEIFKILR---EKKFVLLLDDIWERVN-----LNKVGVPLPSPQSTTASKVVF--TT 296 (911)
Q Consensus 227 ~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~---~k~~LlVlDdv~~~~~-----~~~~~~~l~~~~~~~gs~Iiv--Tt 296 (911)
..|+.++..... .......+....+...+. +...+||||+|+.... +..+... + ...+++|++ .|
T Consensus 835 qvI~qqL~g~~P-~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~-~---~~s~SKLiLIGIS 909 (1164)
T PTZ00112 835 QVLYKQLFNKKP-PNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDW-P---TKINSKLVLIAIS 909 (1164)
T ss_pred HHHHHHHcCCCC-CccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHH-h---hccCCeEEEEEec
Confidence 999988843221 123334455566666552 2345999999975421 2112111 1 123455544 34
Q ss_pred Cchhh--------hhccCCcceEEccCCCHHHHHHHHHHHhCCcc-cCCCccHHHHHHHHHHHhCCcchHHHHHHhhh
Q 002538 297 RFINV--------CGSMEAHRNFKVECLTEKHAWELFQMKVGEET-LKSHPHVFELAQVVAKECGGLPLALITIGRAM 365 (911)
Q Consensus 297 R~~~v--------~~~~~~~~~~~l~~L~~~es~~Lf~~~a~~~~-~~~~~~~~~~~~~i~~~c~GlPLai~~~g~~l 365 (911)
.+.+. ...++ ...+...|++.++-.+++..++.... .-.+..++-+|+.++...|-.=.||.++-.+.
T Consensus 910 NdlDLperLdPRLRSRLg-~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAg 986 (1164)
T PTZ00112 910 NTMDLPERLIPRCRSRLA-FGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAF 986 (1164)
T ss_pred Cchhcchhhhhhhhhccc-cccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHH
Confidence 32222 12222 22366799999999999999886422 11222233344444433444556776665444
No 48
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.53 E-value=7.7e-07 Score=99.75 Aligned_cols=172 Identities=19% Similarity=0.164 Sum_probs=102.6
Q ss_pred ccchHHHHHH---HHHHhccCCceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCccChHHHHHHHHHHcC
Q 002538 158 VKGLESTLED---VWRCLVEESAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDLQIEKNQEIIGKKIG 234 (911)
Q Consensus 158 ~~Gr~~~~~~---l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 234 (911)
++|++..+.. +.+++.....+.+.++|++|+||||+|+.+++.. ...| +.++....-..
T Consensus 14 ~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~---~~~~-----~~l~a~~~~~~---------- 75 (413)
T PRK13342 14 VVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGAT---DAPF-----EALSAVTSGVK---------- 75 (413)
T ss_pred hcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHh---CCCE-----EEEecccccHH----------
Confidence 5588877655 7777777777788899999999999999999876 2333 22221111111
Q ss_pred CCCCccCCCCHHHHHHHHHHH-hhcceEEEEEccccccc--ccccccCCCCCCCCCCCcEEEE--EcCchhh--h-hccC
Q 002538 235 LFDDSWKNKNLDERALEIFKI-LREKKFVLLLDDIWERV--NLNKVGVPLPSPQSTTASKVVF--TTRFINV--C-GSME 306 (911)
Q Consensus 235 ~~~~~~~~~~~~~~~~~l~~~-L~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~gs~Iiv--TtR~~~v--~-~~~~ 306 (911)
+........... ..+++.+|++|+++... ..+.+...+. .|..++| ||.+... . ...+
T Consensus 76 ---------~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le-----~~~iilI~att~n~~~~l~~aL~S 141 (413)
T PRK13342 76 ---------DLREVIEEARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVE-----DGTITLIGATTENPSFEVNPALLS 141 (413)
T ss_pred ---------HHHHHHHHHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhh-----cCcEEEEEeCCCChhhhccHHHhc
Confidence 111111222111 24578899999998653 2333332222 2444444 3444322 1 1122
Q ss_pred CcceEEccCCCHHHHHHHHHHHhCCcccCCCccHHHHHHHHHHHhCCcchHHHHH
Q 002538 307 AHRNFKVECLTEKHAWELFQMKVGEETLKSHPHVFELAQVVAKECGGLPLALITI 361 (911)
Q Consensus 307 ~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 361 (911)
....+.+.+++.++.+.++.+.+.........--.+....|++.|+|.|..+..+
T Consensus 142 R~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~ 196 (413)
T PRK13342 142 RAQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNL 196 (413)
T ss_pred cceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHH
Confidence 3367899999999999999886543211001223466788999999998755433
No 49
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.48 E-value=3.3e-06 Score=86.49 Aligned_cols=162 Identities=19% Similarity=0.175 Sum_probs=101.7
Q ss_pred HHHHhccCCceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCccChHHHHHHHHHHcCCCCCccCCCCHHH
Q 002538 168 VWRCLVEESAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDLQIEKNQEIIGKKIGLFDDSWKNKNLDE 247 (911)
Q Consensus 168 l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~ 247 (911)
+.+++..+..+-+.+||++|+||||||+.+.+.. + .+- ..+|..|-...-..-.+.|.++..
T Consensus 153 lrs~ieq~~ipSmIlWGppG~GKTtlArlia~ts-k--~~S--yrfvelSAt~a~t~dvR~ife~aq------------- 214 (554)
T KOG2028|consen 153 LRSLIEQNRIPSMILWGPPGTGKTTLARLIASTS-K--KHS--YRFVELSATNAKTNDVRDIFEQAQ------------- 214 (554)
T ss_pred HHHHHHcCCCCceEEecCCCCchHHHHHHHHhhc-C--CCc--eEEEEEeccccchHHHHHHHHHHH-------------
Confidence 3444556788999999999999999999999986 2 221 456666654433333344433321
Q ss_pred HHHHHHHHhhcceEEEEEccccccc-ccccccCCCCCCCCCCCcEEEE--EcCchhh---hhccCCcceEEccCCCHHHH
Q 002538 248 RALEIFKILREKKFVLLLDDIWERV-NLNKVGVPLPSPQSTTASKVVF--TTRFINV---CGSMEAHRNFKVECLTEKHA 321 (911)
Q Consensus 248 ~~~~l~~~L~~k~~LlVlDdv~~~~-~~~~~~~~l~~~~~~~gs~Iiv--TtR~~~v---~~~~~~~~~~~l~~L~~~es 321 (911)
=...+.++|.+|.+|+|.... ..+++. +| ...+|+-++| ||.++.. +.-++...++.|++|..++-
T Consensus 215 ----~~~~l~krkTilFiDEiHRFNksQQD~f--LP--~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v 286 (554)
T KOG2028|consen 215 ----NEKSLTKRKTILFIDEIHRFNKSQQDTF--LP--HVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAV 286 (554)
T ss_pred ----HHHhhhcceeEEEeHHhhhhhhhhhhcc--cc--eeccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHH
Confidence 112356789999999997532 223333 44 5567876666 7877765 23344567899999999999
Q ss_pred HHHHHHHhC---Cccc--CCCcc----H-HHHHHHHHHHhCCcc
Q 002538 322 WELFQMKVG---EETL--KSHPH----V-FELAQVVAKECGGLP 355 (911)
Q Consensus 322 ~~Lf~~~a~---~~~~--~~~~~----~-~~~~~~i~~~c~GlP 355 (911)
..++.+... .... ..-++ + ..+..-++..|.|-.
T Consensus 287 ~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDa 330 (554)
T KOG2028|consen 287 VTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDA 330 (554)
T ss_pred HHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchH
Confidence 999887432 2111 11111 2 235556667777754
No 50
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.48 E-value=1.1e-07 Score=106.96 Aligned_cols=196 Identities=24% Similarity=0.347 Sum_probs=120.1
Q ss_pred EEEeecCCc-ccCCCCCCCCCccEEEcccCcccccChhhhccCC-CCcEEEccCCCCcccCccccCcCCCCEEeccCCCc
Q 002538 521 RLLLMKNHI-KHLPDIPTCPHLLTLFLSHNQLRWISEDFFQFMP-SLKVLNLSFTKRHKFPSGISKLASLQLIDLSYTSI 598 (911)
Q Consensus 521 ~L~l~~~~~-~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~-~L~~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i 598 (911)
.+....+.+ .....+...+.+..|.+.+|.++.+++. ...+. +|+.|++++|.+..+|..++.+++|+.|+++.|++
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~-~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l 175 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPL-IGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDL 175 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCcccccCccc-cccchhhcccccccccchhhhhhhhhccccccccccCCchh
Confidence 355555554 3333345556777777777777777664 23342 77888888887777777777788888888888888
Q ss_pred CCcchhhhccCcCcEEecCCCccccccChhhhccCccCcEEEecCCCCCcccccCCCcccccCcccchhhhcCCCCCcEE
Q 002538 599 RGLPEELKALINLKCLNLDQTKFLVTIPRHLISSFSMLHVLRMFGSGSSVFHEASGDSILFDGGELLADELLGLKYLEVL 678 (911)
Q Consensus 599 ~~lp~~l~~L~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L 678 (911)
..+|...+.+.+|+.|++++|. +..+|.. +..+..|++|.+.+|... ..+..+..+.++..+
T Consensus 176 ~~l~~~~~~~~~L~~L~ls~N~-i~~l~~~-~~~~~~L~~l~~~~N~~~----------------~~~~~~~~~~~l~~l 237 (394)
T COG4886 176 SDLPKLLSNLSNLNNLDLSGNK-ISDLPPE-IELLSALEELDLSNNSII----------------ELLSSLSNLKNLSGL 237 (394)
T ss_pred hhhhhhhhhhhhhhheeccCCc-cccCchh-hhhhhhhhhhhhcCCcce----------------ecchhhhhccccccc
Confidence 8777776677778888887776 6777764 455666777777776422 234445555555555
Q ss_pred EEEecCchhhHhhhhcccccCcceEEEeeeccCCCceeecccccccccceEeeccccccceeEecccCccccccccccCC
Q 002538 679 DITLRSRHALQSVLSSHKLRSCTQAIFLQCFKDSKSIYAAALADLKHLKKLCISQCEELEELKIDCTGEVKRMCQPYIFR 758 (911)
Q Consensus 679 ~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~ 758 (911)
.+..+....+ ...++.+++|+.|+++++ .+..+.. . ..+.
T Consensus 238 ~l~~n~~~~~----------------------------~~~~~~l~~l~~L~~s~n-~i~~i~~--~---------~~~~ 277 (394)
T COG4886 238 ELSNNKLEDL----------------------------PESIGNLSNLETLDLSNN-QISSISS--L---------GSLT 277 (394)
T ss_pred ccCCceeeec----------------------------cchhccccccceeccccc-ccccccc--c---------cccC
Confidence 4332222111 124555666777777655 3332221 2 2367
Q ss_pred ccCEEEEecCCCCCCCc
Q 002538 759 SLNKVQIYSCPVLKDLT 775 (911)
Q Consensus 759 ~L~~L~L~~c~~l~~l~ 775 (911)
+|+.|++++......++
T Consensus 278 ~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 278 NLRELDLSGNSLSNALP 294 (394)
T ss_pred ccCEEeccCccccccch
Confidence 77777777764443333
No 51
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.47 E-value=1.4e-07 Score=74.15 Aligned_cols=59 Identities=37% Similarity=0.542 Sum_probs=36.9
Q ss_pred CCccEEEcccCcccccChhhhccCCCCcEEEccCCCCcccC-ccccCcCCCCEEeccCCC
Q 002538 539 PHLLTLFLSHNQLRWISEDFFQFMPSLKVLNLSFTKRHKFP-SGISKLASLQLIDLSYTS 597 (911)
Q Consensus 539 ~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~lp-~~i~~l~~L~~L~L~~~~ 597 (911)
++|++|++++|.++.+++..|.++++|++|++++|.+..+| ..+..+++|++|++++|+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 35666666666666666666666666666666666666653 355666666666666654
No 52
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.47 E-value=4.2e-06 Score=95.95 Aligned_cols=181 Identities=18% Similarity=0.184 Sum_probs=111.1
Q ss_pred ccccchHHHHHHHHHHhccCCce-EEEEEcCCCChHHHHHHHHHhhhccCCCC-------------------CceEEEEE
Q 002538 156 AIVKGLESTLEDVWRCLVEESAG-IIGLYGMGGVGKTTLLTRINNKFLESPSD-------------------FDCVIWVV 215 (911)
Q Consensus 156 ~~~~Gr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~~-------------------f~~~~wv~ 215 (911)
+.++|.+..++.|.+++..+++. .+.++|..|+||||+|+.+.+... -... |..++++.
T Consensus 16 dEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLn-Ce~~~~~~PCG~C~sCr~I~~G~h~DviEID 94 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALN-CETGVTSQPCGVCRACREIDEGRFVDYVEMD 94 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhc-CccCCCCCCCcccHHHHHHhcCCCceEEEec
Confidence 34679999999999999877644 557999999999999999988762 1111 11122222
Q ss_pred eCCccChHHHHHHHHHHcCCCCCccCCCCHHHHHHHHHHH----hhcceEEEEEccccccc--ccccccCCCCCCCCCCC
Q 002538 216 VSKDLQIEKNQEIIGKKIGLFDDSWKNKNLDERALEIFKI----LREKKFVLLLDDIWERV--NLNKVGVPLPSPQSTTA 289 (911)
Q Consensus 216 ~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~----L~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~g 289 (911)
.+.. ...+++...+... ..++.-++|||++.... .+..+...+. .....
T Consensus 95 Aas~-----------------------rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLE--EPP~~ 149 (830)
T PRK07003 95 AASN-----------------------RGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLE--EPPPH 149 (830)
T ss_pred cccc-----------------------ccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHH--hcCCC
Confidence 1111 1122222222111 12455588999998653 2444444443 23346
Q ss_pred cEEEEEcCchhhh--hccCCcceEEccCCCHHHHHHHHHHHhCCcccCCCccHHHHHHHHHHHhCCcc-hHHHHHHhhh
Q 002538 290 SKVVFTTRFINVC--GSMEAHRNFKVECLTEKHAWELFQMKVGEETLKSHPHVFELAQVVAKECGGLP-LALITIGRAM 365 (911)
Q Consensus 290 s~IivTtR~~~v~--~~~~~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~GlP-Lai~~~g~~l 365 (911)
.++|+||++.+-. ...+-...|++++++.++..+.+.+.+...... --.+....|++.++|.. -|+..+-..+
T Consensus 150 v~FILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~---id~eAL~lIA~~A~GsmRdALsLLdQAi 225 (830)
T PRK07003 150 VKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIA---FEPQALRLLARAAQGSMRDALSLTDQAI 225 (830)
T ss_pred eEEEEEECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 7777777665432 122334679999999999999998876543321 12467788999998865 4666544433
No 53
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.46 E-value=2.6e-06 Score=102.88 Aligned_cols=307 Identities=14% Similarity=0.162 Sum_probs=171.6
Q ss_pred ccchHHHHHHHHHHhcc---CCceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCccC---hHHHHHHHHH
Q 002538 158 VKGLESTLEDVWRCLVE---ESAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDLQ---IEKNQEIIGK 231 (911)
Q Consensus 158 ~~Gr~~~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~---~~~~~~~i~~ 231 (911)
++||+.+++.+...+.+ +...++.+.|..|||||+++++|.....+.++.|-...+-....+.. ..+..++++.
T Consensus 2 l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r~l~~ 81 (849)
T COG3899 2 LYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQFERNIPLSPLVQAFRDLMG 81 (849)
T ss_pred CCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhcccccCCCchHHHHHHHHHHHH
Confidence 46999999999998875 46679999999999999999999998733322222111111222221 2223333333
Q ss_pred Hc-------------------CCCCC--------------------ccCCCCHHHH-----HHHHHHHh-hcceEEEEEc
Q 002538 232 KI-------------------GLFDD--------------------SWKNKNLDER-----ALEIFKIL-REKKFVLLLD 266 (911)
Q Consensus 232 ~l-------------------~~~~~--------------------~~~~~~~~~~-----~~~l~~~L-~~k~~LlVlD 266 (911)
++ +.... .......+.+ ...+..+. +.|+.++|+|
T Consensus 82 ~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi~le 161 (849)
T COG3899 82 QLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVIVLE 161 (849)
T ss_pred HHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEEEEe
Confidence 33 11110 0001111111 12222333 3469999999
Q ss_pred cc-ccccc----cccccCCCCCCCCCCCcEEEEE--cCch--hhhhccCCcceEEccCCCHHHHHHHHHHHhCCcccCCC
Q 002538 267 DI-WERVN----LNKVGVPLPSPQSTTASKVVFT--TRFI--NVCGSMEAHRNFKVECLTEKHAWELFQMKVGEETLKSH 337 (911)
Q Consensus 267 dv-~~~~~----~~~~~~~l~~~~~~~gs~IivT--tR~~--~v~~~~~~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~ 337 (911)
|+ |-... ++.+...... .......|..+ .+.. .+-........+.|.||+..+.-.+.....+...
T Consensus 162 DlhWaD~~SL~lL~~lm~~~~~-~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~---- 236 (849)
T COG3899 162 DLHWADSASLKLLQLLMDRIAI-GAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTK---- 236 (849)
T ss_pred cccccChhHHHHHHHHHHhcch-hhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCcc----
Confidence 99 43211 1111110000 00001123322 2221 1222233457899999999999999998876532
Q ss_pred ccHHHHHHHHHHHhCCcchHHHHHHhhhccC------CCHHHHHHHHHHHHhcccccCCCchhhccccccccCCCChhhh
Q 002538 338 PHVFELAQVVAKECGGLPLALITIGRAMAYK------KTREEWKYAIEVLRRSTFELAGLEKEVYPLLKFSYDCLPNDII 411 (911)
Q Consensus 338 ~~~~~~~~~i~~~c~GlPLai~~~g~~l~~~------~~~~~w~~~~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~ 411 (911)
....+....|+++..|+|+-+.-+-..+... .+...|..-...+.. .+..+.+...+..-.+.||. ..
T Consensus 237 ~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~-----~~~~~~vv~~l~~rl~kL~~-~t 310 (849)
T COG3899 237 LLPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGI-----LATTDAVVEFLAARLQKLPG-TT 310 (849)
T ss_pred cccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCC-----chhhHHHHHHHHHHHhcCCH-HH
Confidence 2335788999999999999998887777653 345556542222211 11122355567777889998 78
Q ss_pred hHHHHHhhcCCCCcccChHHHHHHHHhcCCccCCcccccchhHhHHHHHHHHhhccccc-------CCC---ceehhHHH
Q 002538 412 RSCFLYCCLYPEDWNTFKRNLIDCWIGEGFLEENDRFGAHNQGYYIVGTLVHACLLEEV-------EDD---KVKMHDVI 481 (911)
Q Consensus 412 k~cfl~~~~fp~~~~i~~~~li~~w~aeg~i~~~~~~~~~~~~~~~l~~L~~~~ll~~~-------~~~---~~~mHdlv 481 (911)
+.-+-..|++-.. ++.+.|...|-. .....+...++.|....++-.. ... +-..||++
T Consensus 311 ~~Vl~~AA~iG~~--F~l~~La~l~~~----------~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~v 378 (849)
T COG3899 311 REVLKAAACIGNR--FDLDTLAALAED----------SPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHDRV 378 (849)
T ss_pred HHHHHHHHHhCcc--CCHHHHHHHHhh----------chHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHHHH
Confidence 8888888887544 445555444421 2334455555555555554321 111 22578888
Q ss_pred HHHHHH
Q 002538 482 RDMALW 487 (911)
Q Consensus 482 ~d~a~~ 487 (911)
++.|..
T Consensus 379 qqaaY~ 384 (849)
T COG3899 379 QQAAYN 384 (849)
T ss_pred HHHHhc
Confidence 888754
No 54
>PF13173 AAA_14: AAA domain
Probab=98.45 E-value=3.8e-07 Score=84.13 Aligned_cols=119 Identities=17% Similarity=0.171 Sum_probs=80.0
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCccChHHHHHHHHHHcCCCCCccCCCCHHHHHHHHHHHh
Q 002538 177 AGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDLQIEKNQEIIGKKIGLFDDSWKNKNLDERALEIFKIL 256 (911)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L 256 (911)
.+++.|.|+.|+||||++++++++. . ....+++++.......... ..+ ..+.+.+..
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~-~---~~~~~~yi~~~~~~~~~~~------------------~~~-~~~~~~~~~ 58 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDL-L---PPENILYINFDDPRDRRLA------------------DPD-LLEYFLELI 58 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh-c---ccccceeeccCCHHHHHHh------------------hhh-hHHHHHHhh
Confidence 4689999999999999999999887 2 3455666655433221100 000 222333333
Q ss_pred hcceEEEEEcccccccccccccCCCCCCCCCCCcEEEEEcCchhhhhcc------CCcceEEccCCCHHH
Q 002538 257 REKKFVLLLDDIWERVNLNKVGVPLPSPQSTTASKVVFTTRFINVCGSM------EAHRNFKVECLTEKH 320 (911)
Q Consensus 257 ~~k~~LlVlDdv~~~~~~~~~~~~l~~~~~~~gs~IivTtR~~~v~~~~------~~~~~~~l~~L~~~e 320 (911)
..++.+|+||+|....+|......+. +.....+|++|+.+......- +....++|.||+-.|
T Consensus 59 ~~~~~~i~iDEiq~~~~~~~~lk~l~--d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E 126 (128)
T PF13173_consen 59 KPGKKYIFIDEIQYLPDWEDALKFLV--DNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFRE 126 (128)
T ss_pred ccCCcEEEEehhhhhccHHHHHHHHH--HhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHH
Confidence 34778999999999888887766665 545568999999877775321 223467999999877
No 55
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=5.4e-09 Score=103.68 Aligned_cols=184 Identities=18% Similarity=0.117 Sum_probs=100.5
Q ss_pred CCCEEeccCCCcCC--cchhhhccCcCcEEecCCCccccccChhhhccCccCcEEEecCCCCCcccccCCCcccccCccc
Q 002538 587 SLQLIDLSYTSIRG--LPEELKALINLKCLNLDQTKFLVTIPRHLISSFSMLHVLRMFGSGSSVFHEASGDSILFDGGEL 664 (911)
Q Consensus 587 ~L~~L~L~~~~i~~--lp~~l~~L~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 664 (911)
.|++|||+.+.|+. +-..+..+.+|+.|.+.|+..-..+... |.+-.+|+.|+++.|+.. ....
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~-iAkN~~L~~lnlsm~sG~-------------t~n~ 251 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNT-IAKNSNLVRLNLSMCSGF-------------TENA 251 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHH-Hhccccceeecccccccc-------------chhH
Confidence 48888888887765 5556777888888888887643344333 667777888888776533 0112
Q ss_pred chhhhcCCCCCcEEEEEecCchhhHhhhhcccccCcceEEEeeeccCCCceeecccccccccceEeeccccccce-eEec
Q 002538 665 LADELLGLKYLEVLDITLRSRHALQSVLSSHKLRSCTQAIFLQCFKDSKSIYAAALADLKHLKKLCISQCEELEE-LKID 743 (911)
Q Consensus 665 ~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~-l~~~ 743 (911)
.---+.+++.|..|+++|+....-. +....-.--++|..|+|+||...-. -.+.
T Consensus 252 ~~ll~~scs~L~~LNlsWc~l~~~~-------------------------Vtv~V~hise~l~~LNlsG~rrnl~~sh~~ 306 (419)
T KOG2120|consen 252 LQLLLSSCSRLDELNLSWCFLFTEK-------------------------VTVAVAHISETLTQLNLSGYRRNLQKSHLS 306 (419)
T ss_pred HHHHHHhhhhHhhcCchHhhccchh-------------------------hhHHHhhhchhhhhhhhhhhHhhhhhhHHH
Confidence 2233455566666666544332110 0000001125667777776642110 0011
Q ss_pred ccCccccccccccCCccCEEEEecCCCCCC--CcccccCCCcceEeEecccccccccccCcchhhhhhcCCCCcccccce
Q 002538 744 CTGEVKRMCQPYIFRSLNKVQIYSCPVLKD--LTFLVFAPNLKSIDVRSCSVMKEIVSAGKSADIAEMMGNMSPFAKLQN 821 (911)
Q Consensus 744 ~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~--l~~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~p~L~~ 821 (911)
.+. ..+|+|.+|+|++|..+++ +..+.+++.|++|.++.|..+-. +..-.+...|+|.+
T Consensus 307 tL~--------~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p-----------~~~~~l~s~psl~y 367 (419)
T KOG2120|consen 307 TLV--------RRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIP-----------ETLLELNSKPSLVY 367 (419)
T ss_pred HHH--------HhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCCh-----------HHeeeeccCcceEE
Confidence 111 3467777777777765554 11245677777777777765321 11123555666777
Q ss_pred ecccccc
Q 002538 822 LQLVRLQ 828 (911)
Q Consensus 822 L~L~~~~ 828 (911)
|++.+|-
T Consensus 368 Ldv~g~v 374 (419)
T KOG2120|consen 368 LDVFGCV 374 (419)
T ss_pred EEecccc
Confidence 7666653
No 56
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.43 E-value=3.3e-08 Score=98.09 Aligned_cols=134 Identities=26% Similarity=0.234 Sum_probs=95.4
Q ss_pred CCCCCccEEEcccCcccccChhhhccCCCCcEEEccCCCCcccCccccCcCCCCEEeccCCCcCCcchhhhccCcCcEEe
Q 002538 536 PTCPHLLTLFLSHNQLRWISEDFFQFMPSLKVLNLSFTKRHKFPSGISKLASLQLIDLSYTSIRGLPEELKALINLKCLN 615 (911)
Q Consensus 536 ~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~l~~L~~L~~L~ 615 (911)
.....|+++++++|.++.+..+ .+-.|.+++|++|+|.+..+.. +..|++|+.|||++|.++++-..-.+|-|.++|.
T Consensus 281 dTWq~LtelDLS~N~I~~iDES-vKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~ 358 (490)
T KOG1259|consen 281 DTWQELTELDLSGNLITQIDES-VKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLK 358 (490)
T ss_pred chHhhhhhccccccchhhhhhh-hhhccceeEEeccccceeeehh-hhhcccceEeecccchhHhhhhhHhhhcCEeeee
Confidence 3445678888888877777665 5667888888888888776653 7778888888888888777766667777888888
Q ss_pred cCCCccccccChhhhccCccCcEEEecCCCCCcccccCCCcccccCcccchhhhcCCCCCcEEEEEecCchhh
Q 002538 616 LDQTKFLVTIPRHLISSFSMLHVLRMFGSGSSVFHEASGDSILFDGGELLADELLGLKYLEVLDITLRSRHAL 688 (911)
Q Consensus 616 L~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~ 688 (911)
+.+|. +..+.- ++++-+|..|++.+|.+. .-.....+++|+-|+.+.+.+|....+
T Consensus 359 La~N~-iE~LSG--L~KLYSLvnLDl~~N~Ie--------------~ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 359 LAQNK-IETLSG--LRKLYSLVNLDLSSNQIE--------------ELDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred hhhhh-Hhhhhh--hHhhhhheeccccccchh--------------hHHHhcccccccHHHHHhhcCCCcccc
Confidence 88875 555543 677778888888877654 122344567777777777776665443
No 57
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.42 E-value=3.5e-07 Score=93.59 Aligned_cols=93 Identities=17% Similarity=0.102 Sum_probs=64.5
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCc--cChHHHHHHHHHHcCCCCCccCCCCHH------
Q 002538 175 ESAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKD--LQIEKNQEIIGKKIGLFDDSWKNKNLD------ 246 (911)
Q Consensus 175 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~--~~~~~~~~~i~~~l~~~~~~~~~~~~~------ 246 (911)
.....++|+|++|+|||||++++++.. .. .+|+.++|+.+++. .+..++++.+...+-...- ......
T Consensus 14 ~~Gqr~~I~G~~G~GKTTLlr~I~n~l-~~-~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~--~~~~~~~~~~~~ 89 (249)
T cd01128 14 GKGQRGLIVAPPKAGKTTLLQSIANAI-TK-NHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTF--DEPPERHVQVAE 89 (249)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcc-cc-ccCCeEEEEEEccCCCccHHHHHHHhccEEEEecC--CCCHHHHHHHHH
Confidence 456789999999999999999999997 33 48999999998877 7899999999443322211 111111
Q ss_pred HHHHHHHHH-hhcceEEEEEcccccc
Q 002538 247 ERALEIFKI-LREKKFVLLLDDIWER 271 (911)
Q Consensus 247 ~~~~~l~~~-L~~k~~LlVlDdv~~~ 271 (911)
........+ -++++.++++|++...
T Consensus 90 ~~~~~a~~~~~~G~~vll~iDei~r~ 115 (249)
T cd01128 90 MVLEKAKRLVEHGKDVVILLDSITRL 115 (249)
T ss_pred HHHHHHHHHHHCCCCEEEEEECHHHh
Confidence 111122222 2479999999999653
No 58
>PRK04195 replication factor C large subunit; Provisional
Probab=98.42 E-value=7.2e-06 Score=93.87 Aligned_cols=172 Identities=18% Similarity=0.189 Sum_probs=104.5
Q ss_pred cccchHHHHHHHHHHhcc---C-CceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCccChHHHHHHHHHH
Q 002538 157 IVKGLESTLEDVWRCLVE---E-SAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDLQIEKNQEIIGKK 232 (911)
Q Consensus 157 ~~~Gr~~~~~~l~~~L~~---~-~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 232 (911)
.++|.++.++.+.+|+.. + ..+.+.|+|++|+||||+|+.++++. . ++ ++-++.+...+...+ ..++..
T Consensus 15 dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el-~----~~-~ielnasd~r~~~~i-~~~i~~ 87 (482)
T PRK04195 15 DVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDY-G----WE-VIELNASDQRTADVI-ERVAGE 87 (482)
T ss_pred HhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHc-C----CC-EEEEcccccccHHHH-HHHHHH
Confidence 367999999999999864 1 26789999999999999999999986 1 22 333444433222222 222222
Q ss_pred cCCCCCccCCCCHHHHHHHHHHHhh-cceEEEEEcccccccc------cccccCCCCCCCCCCCcEEEEEcCchhh-hh-
Q 002538 233 IGLFDDSWKNKNLDERALEIFKILR-EKKFVLLLDDIWERVN------LNKVGVPLPSPQSTTASKVVFTTRFINV-CG- 303 (911)
Q Consensus 233 l~~~~~~~~~~~~~~~~~~l~~~L~-~k~~LlVlDdv~~~~~------~~~~~~~l~~~~~~~gs~IivTtR~~~v-~~- 303 (911)
..... .+. .++-+||+||++.... +..+...+. ..+..||+|+.+..- ..
T Consensus 88 ~~~~~-----------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~----~~~~~iIli~n~~~~~~~k 146 (482)
T PRK04195 88 AATSG-----------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIK----KAKQPIILTANDPYDPSLR 146 (482)
T ss_pred hhccC-----------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHH----cCCCCEEEeccCccccchh
Confidence 11100 011 3678999999986422 223322222 123446666643321 11
Q ss_pred cc-CCcceEEccCCCHHHHHHHHHHHhCCcccCCCccHHHHHHHHHHHhCCcchHHH
Q 002538 304 SM-EAHRNFKVECLTEKHAWELFQMKVGEETLKSHPHVFELAQVVAKECGGLPLALI 359 (911)
Q Consensus 304 ~~-~~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~GlPLai~ 359 (911)
.. .....+++.+++.++....+.+.+.......+ .+....|++.++|..-.+.
T Consensus 147 ~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi~i~---~eaL~~Ia~~s~GDlR~ai 200 (482)
T PRK04195 147 ELRNACLMIEFKRLSTRSIVPVLKRICRKEGIECD---DEALKEIAERSGGDLRSAI 200 (482)
T ss_pred hHhccceEEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHH
Confidence 11 23457899999999998888877644332222 4677889999999766443
No 59
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.42 E-value=6.7e-06 Score=88.77 Aligned_cols=177 Identities=12% Similarity=0.137 Sum_probs=112.5
Q ss_pred cccchHHHHHHHHHHhccCCce-EEEEEcCCCChHHHHHHHHHhhhc---cCCCCCceEEEEE-eCCccChHHHHHHHHH
Q 002538 157 IVKGLESTLEDVWRCLVEESAG-IIGLYGMGGVGKTTLLTRINNKFL---ESPSDFDCVIWVV-VSKDLQIEKNQEIIGK 231 (911)
Q Consensus 157 ~~~Gr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~---~~~~~f~~~~wv~-~s~~~~~~~~~~~i~~ 231 (911)
.++|.+..++.+.+.+..++.+ .+.++|+.|+||||+|+.+++... ....|+|...|.. -+....++++. .+.+
T Consensus 5 ~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~ir-~~~~ 83 (313)
T PRK05564 5 TIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDIR-NIIE 83 (313)
T ss_pred hccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHHH-HHHH
Confidence 4569999999999999876654 668999999999999999998641 1234667666654 22333333322 2222
Q ss_pred HcCCCCCccCCCCHHHHHHHHHHHhhcceEEEEEccccc--ccccccccCCCCCCCCCCCcEEEEEcCchhhh-h-ccCC
Q 002538 232 KIGLFDDSWKNKNLDERALEIFKILREKKFVLLLDDIWE--RVNLNKVGVPLPSPQSTTASKVVFTTRFINVC-G-SMEA 307 (911)
Q Consensus 232 ~l~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~--~~~~~~~~~~l~~~~~~~gs~IivTtR~~~v~-~-~~~~ 307 (911)
.+... -..+++-++|+||++. ...+..+...+. ....++.+|++|.+.+.. . ..+.
T Consensus 84 ~~~~~------------------p~~~~~kv~iI~~ad~m~~~a~naLLK~LE--epp~~t~~il~~~~~~~ll~TI~SR 143 (313)
T PRK05564 84 EVNKK------------------PYEGDKKVIIIYNSEKMTEQAQNAFLKTIE--EPPKGVFIILLCENLEQILDTIKSR 143 (313)
T ss_pred HHhcC------------------cccCCceEEEEechhhcCHHHHHHHHHHhc--CCCCCeEEEEEeCChHhCcHHHHhh
Confidence 22111 0124455666676654 445666655565 445688888888765532 1 1233
Q ss_pred cceEEccCCCHHHHHHHHHHHhCCcccCCCccHHHHHHHHHHHhCCcchHHHHH
Q 002538 308 HRNFKVECLTEKHAWELFQMKVGEETLKSHPHVFELAQVVAKECGGLPLALITI 361 (911)
Q Consensus 308 ~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 361 (911)
...+++.++++++....+.+..... -.+.+..++..++|.|..+...
T Consensus 144 c~~~~~~~~~~~~~~~~l~~~~~~~-------~~~~~~~l~~~~~g~~~~a~~~ 190 (313)
T PRK05564 144 CQIYKLNRLSKEEIEKFISYKYNDI-------KEEEKKSAIAFSDGIPGKVEKF 190 (313)
T ss_pred ceeeeCCCcCHHHHHHHHHHHhcCC-------CHHHHHHHHHHcCCCHHHHHHH
Confidence 4688999999999988776654211 1244677899999998765433
No 60
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.41 E-value=9e-06 Score=92.08 Aligned_cols=196 Identities=18% Similarity=0.167 Sum_probs=108.5
Q ss_pred ccccchHHHHHHHHHHhccCCce-EEEEEcCCCChHHHHHHHHHhhhccCCC--CCceEEEEEeCCccChHHHHHHHHH-
Q 002538 156 AIVKGLESTLEDVWRCLVEESAG-IIGLYGMGGVGKTTLLTRINNKFLESPS--DFDCVIWVVVSKDLQIEKNQEIIGK- 231 (911)
Q Consensus 156 ~~~~Gr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~--~f~~~~wv~~s~~~~~~~~~~~i~~- 231 (911)
..++|.+..++.|.+.+..+++. .+.++|..|+||||+|+.+.+...-... ... .. +..+..-..-..|..
T Consensus 16 ddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g-~~----~~PCG~C~sC~~I~aG 90 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGG-IT----AQPCGQCRACTEIDAG 90 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcccccc-CC----CCCCcccHHHHHHHcC
Confidence 34679999999999999887665 5689999999999999999887621000 000 00 000000000000000
Q ss_pred ----HcCCCCCccCCCCHHHHHHHHHHH----hhcceEEEEEccccccc--ccccccCCCCCCCCCCCcEE-EEEcCchh
Q 002538 232 ----KIGLFDDSWKNKNLDERALEIFKI----LREKKFVLLLDDIWERV--NLNKVGVPLPSPQSTTASKV-VFTTRFIN 300 (911)
Q Consensus 232 ----~l~~~~~~~~~~~~~~~~~~l~~~----L~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~gs~I-ivTtR~~~ 300 (911)
-+.+.. ......+++.+.+... ..++.-++|||+++... .+..+...+. ....+.++ ++||....
T Consensus 91 ~hpDviEIdA--as~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLE--EPP~~v~FILaTtep~k 166 (700)
T PRK12323 91 RFVDYIEMDA--ASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLE--EPPEHVKFILATTDPQK 166 (700)
T ss_pred CCCcceEecc--cccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhc--cCCCCceEEEEeCChHh
Confidence 000000 0111223222222211 13566699999998642 3444444443 22234454 45555555
Q ss_pred hhhc-cCCcceEEccCCCHHHHHHHHHHHhCCcccCCCccHHHHHHHHHHHhCCcch-HHHHHHh
Q 002538 301 VCGS-MEAHRNFKVECLTEKHAWELFQMKVGEETLKSHPHVFELAQVVAKECGGLPL-ALITIGR 363 (911)
Q Consensus 301 v~~~-~~~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~GlPL-ai~~~g~ 363 (911)
+... .+-...|++++++.++..+.+.+.+...... .-.+....|++.++|.|. |+..+-.
T Consensus 167 LlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~---~d~eAL~~IA~~A~Gs~RdALsLLdQ 228 (700)
T PRK12323 167 IPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIA---HEVNALRLLAQAAQGSMRDALSLTDQ 228 (700)
T ss_pred hhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 5322 2334688999999999999888776433211 123556889999999986 4444443
No 61
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.41 E-value=2.5e-07 Score=103.98 Aligned_cols=157 Identities=26% Similarity=0.367 Sum_probs=126.7
Q ss_pred CCCcccceEEEeecCCcccCCCCCCCC--CccEEEcccCcccccChhhhccCCCCcEEEccCCCCcccCccccCcCCCCE
Q 002538 513 VEGWEKVKRLLLMKNHIKHLPDIPTCP--HLLTLFLSHNQLRWISEDFFQFMPSLKVLNLSFTKRHKFPSGISKLASLQL 590 (911)
Q Consensus 513 ~~~~~~l~~L~l~~~~~~~l~~~~~~~--~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~ 590 (911)
......+..+.+.+|.+..++...... +|+.|++++|.+..++.. +..+++|+.|++++|++..+|...+.+++|+.
T Consensus 112 ~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~-~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~ 190 (394)
T COG4886 112 LLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSP-LRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNN 190 (394)
T ss_pred hhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhh-hhccccccccccCCchhhhhhhhhhhhhhhhh
Confidence 344467999999999999998855553 899999999998887633 68899999999999999999988889999999
Q ss_pred EeccCCCcCCcchhhhccCcCcEEecCCCccccccChhhhccCccCcEEEecCCCCCcccccCCCcccccCcccchhhhc
Q 002538 591 IDLSYTSIRGLPEELKALINLKCLNLDQTKFLVTIPRHLISSFSMLHVLRMFGSGSSVFHEASGDSILFDGGELLADELL 670 (911)
Q Consensus 591 L~L~~~~i~~lp~~l~~L~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 670 (911)
|++++|++..+|..+..+.+|+.|.+++|.. ..++.. +.+++++..|.+.++... ..+..++
T Consensus 191 L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~-~~~~~~-~~~~~~l~~l~l~~n~~~----------------~~~~~~~ 252 (394)
T COG4886 191 LDLSGNKISDLPPEIELLSALEELDLSNNSI-IELLSS-LSNLKNLSGLELSNNKLE----------------DLPESIG 252 (394)
T ss_pred eeccCCccccCchhhhhhhhhhhhhhcCCcc-eecchh-hhhcccccccccCCceee----------------eccchhc
Confidence 9999999999999888888899999999963 444443 788888888887766543 2256677
Q ss_pred CCCCCcEEEEEecCchhh
Q 002538 671 GLKYLEVLDITLRSRHAL 688 (911)
Q Consensus 671 ~L~~L~~L~l~~~~~~~~ 688 (911)
.+++++.|+++.+....+
T Consensus 253 ~l~~l~~L~~s~n~i~~i 270 (394)
T COG4886 253 NLSNLETLDLSNNQISSI 270 (394)
T ss_pred cccccceecccccccccc
Confidence 778888888875554443
No 62
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.41 E-value=3.6e-05 Score=90.04 Aligned_cols=201 Identities=14% Similarity=0.047 Sum_probs=119.1
Q ss_pred cccchHHHHHHHHHHhccCCceEEEEEcCCCChHHHHHHHHHhhhccCCCCC---ceEEEEEeCCc---cChHHHHHH--
Q 002538 157 IVKGLESTLEDVWRCLVEESAGIIGLYGMGGVGKTTLLTRINNKFLESPSDF---DCVIWVVVSKD---LQIEKNQEI-- 228 (911)
Q Consensus 157 ~~~Gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f---~~~~wv~~s~~---~~~~~~~~~-- 228 (911)
.++|++..+..+.+.+.......+.|+|.+|+||||+|+.+++.. .....+ ...-|+.+... .+...+...
T Consensus 155 ~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~-~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~~ll 233 (615)
T TIGR02903 155 EIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEA-KKLKHTPFAEDAPFVEVDGTTLRWDPREVTNPLL 233 (615)
T ss_pred hceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhh-hhccCCcccCCCCeEEEechhccCCHHHHhHHhc
Confidence 466999999988888866667789999999999999999998876 322322 12334444321 122222111
Q ss_pred -------------HHHHcCCCC----------------CccCCCCHHHHHHHHHHHhhcceEEEEEcccccc--cccccc
Q 002538 229 -------------IGKKIGLFD----------------DSWKNKNLDERALEIFKILREKKFVLLLDDIWER--VNLNKV 277 (911)
Q Consensus 229 -------------i~~~l~~~~----------------~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~--~~~~~~ 277 (911)
.+...+... +..... ....+..+.+.++++++.++-|+.|.. ..|+.+
T Consensus 234 g~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~L-d~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~i 312 (615)
T TIGR02903 234 GSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGEL-DPLLQNKLLKVLEDKRVEFSSSYYDPDDPNVPKYI 312 (615)
T ss_pred CCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccC-CHHHHHHHHHHHhhCeEEeecceeccCCcccchhh
Confidence 111111110 011111 123567888888999999998777654 347777
Q ss_pred cCCCCCCCCCCCcEEEE--EcCchhhh-hcc-CCcceEEccCCCHHHHHHHHHHHhCCcccCCCccHHHHHHHHHHHhCC
Q 002538 278 GVPLPSPQSTTASKVVF--TTRFINVC-GSM-EAHRNFKVECLTEKHAWELFQMKVGEETLKSHPHVFELAQVVAKECGG 353 (911)
Q Consensus 278 ~~~l~~~~~~~gs~Iiv--TtR~~~v~-~~~-~~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~G 353 (911)
...+. .......|++ ||++.... ..+ +....+.+.+++.+|.+.++++.+....... -.++...|.+.+..
T Consensus 313 k~~~~--~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v~l---s~eal~~L~~ys~~ 387 (615)
T TIGR02903 313 KKLFE--EGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINVHL---AAGVEELIARYTIE 387 (615)
T ss_pred hhhcc--cCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHCCCc
Confidence 66555 4444444555 66654421 111 1234678999999999999998775332111 13455556665554
Q ss_pred cchHHHHHHhh
Q 002538 354 LPLALITIGRA 364 (911)
Q Consensus 354 lPLai~~~g~~ 364 (911)
-+-|+..++..
T Consensus 388 gRraln~L~~~ 398 (615)
T TIGR02903 388 GRKAVNILADV 398 (615)
T ss_pred HHHHHHHHHHH
Confidence 46666666544
No 63
>PLN03150 hypothetical protein; Provisional
Probab=98.39 E-value=7.8e-07 Score=104.80 Aligned_cols=107 Identities=25% Similarity=0.363 Sum_probs=86.8
Q ss_pred CccEEEcccCcccccChhhhccCCCCcEEEccCCCCc-ccCccccCcCCCCEEeccCCCcCC-cchhhhccCcCcEEecC
Q 002538 540 HLLTLFLSHNQLRWISEDFFQFMPSLKVLNLSFTKRH-KFPSGISKLASLQLIDLSYTSIRG-LPEELKALINLKCLNLD 617 (911)
Q Consensus 540 ~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~-~lp~~i~~l~~L~~L~L~~~~i~~-lp~~l~~L~~L~~L~L~ 617 (911)
.++.|+|++|.+.+..+..+..+++|+.|+|++|.+. .+|..++.+++|++|+|++|++.. +|..++++++|++|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 4778888888887666666888999999999999886 678889999999999999998885 88889999999999999
Q ss_pred CCccccccChhhhccCccCcEEEecCCCC
Q 002538 618 QTKFLVTIPRHLISSFSMLHVLRMFGSGS 646 (911)
Q Consensus 618 ~~~~l~~lp~~~i~~l~~L~~L~l~~~~~ 646 (911)
+|...+.+|..+...+.++..+++.+|..
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCcc
Confidence 99877788876333345677788777654
No 64
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.39 E-value=1.9e-06 Score=81.93 Aligned_cols=122 Identities=25% Similarity=0.167 Sum_probs=73.9
Q ss_pred chHHHHHHHHHHhccCCceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCccChHHHHHHHHHHcCCCCCc
Q 002538 160 GLESTLEDVWRCLVEESAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDLQIEKNQEIIGKKIGLFDDS 239 (911)
Q Consensus 160 Gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~ 239 (911)
|++..+..+...+.....+.+.|+|.+|+||||+|+.+++.. . ..-..++++..+...........+...
T Consensus 2 ~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~-~--~~~~~v~~~~~~~~~~~~~~~~~~~~~------- 71 (151)
T cd00009 2 GQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANEL-F--RPGAPFLYLNASDLLEGLVVAELFGHF------- 71 (151)
T ss_pred chHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHh-h--cCCCCeEEEehhhhhhhhHHHHHhhhh-------
Confidence 788899999999877677889999999999999999999987 2 223456666655433322211111000
Q ss_pred cCCCCHHHHHHHHHHHhhcceEEEEEcccccc-----cccccccCCCCCCC---CCCCcEEEEEcCchh
Q 002538 240 WKNKNLDERALEIFKILREKKFVLLLDDIWER-----VNLNKVGVPLPSPQ---STTASKVVFTTRFIN 300 (911)
Q Consensus 240 ~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~-----~~~~~~~~~l~~~~---~~~gs~IivTtR~~~ 300 (911)
............++.++|+||++.. ..+..+...+. . ...+..||+||....
T Consensus 72 -------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~--~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 -------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLN--DLRIDRENVRVIGATNRPL 131 (151)
T ss_pred -------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcC--ceeccCCCeEEEEecCccc
Confidence 0011111223456789999999853 12222222111 1 135778888887543
No 65
>PRK08727 hypothetical protein; Validated
Probab=98.39 E-value=2.1e-06 Score=88.11 Aligned_cols=169 Identities=11% Similarity=0.056 Sum_probs=97.4
Q ss_pred ccccchHHHHHHHHHHhccCCceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCccChHHHHHHHHHHcCC
Q 002538 156 AIVKGLESTLEDVWRCLVEESAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDLQIEKNQEIIGKKIGL 235 (911)
Q Consensus 156 ~~~~Gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 235 (911)
..++|-......+...........+.|+|..|+|||+|++++++... +....+.|++..+ ....+.
T Consensus 20 ~f~~~~~n~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~~---~~~~~~~y~~~~~------~~~~~~----- 85 (233)
T PRK08727 20 SYIAAPDGLLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAAE---QAGRSSAYLPLQA------AAGRLR----- 85 (233)
T ss_pred hccCCcHHHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCcEEEEeHHH------hhhhHH-----
Confidence 34545444444444443333445799999999999999999998862 2233566665322 111110
Q ss_pred CCCccCCCCHHHHHHHHHHHhhcceEEEEEccccccc---cccc-ccCCCCCCCCCCCcEEEEEcCchhh---------h
Q 002538 236 FDDSWKNKNLDERALEIFKILREKKFVLLLDDIWERV---NLNK-VGVPLPSPQSTTASKVVFTTRFINV---------C 302 (911)
Q Consensus 236 ~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~---~~~~-~~~~l~~~~~~~gs~IivTtR~~~v---------~ 302 (911)
...+.+ .+.-+||+||+.... .|+. +...+.. ....|..||+|++...- .
T Consensus 86 ---------------~~~~~l-~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~-~~~~~~~vI~ts~~~p~~l~~~~~dL~ 148 (233)
T PRK08727 86 ---------------DALEAL-EGRSLVALDGLESIAGQREDEVALFDFHNR-ARAAGITLLYTARQMPDGLALVLPDLR 148 (233)
T ss_pred ---------------HHHHHH-hcCCEEEEeCcccccCChHHHHHHHHHHHH-HHHcCCeEEEECCCChhhhhhhhHHHH
Confidence 011111 133489999997432 2221 1111110 11245679999985322 2
Q ss_pred hccCCcceEEccCCCHHHHHHHHHHHhCCcccCCCccHHHHHHHHHHHhCCcchHH
Q 002538 303 GSMEAHRNFKVECLTEKHAWELFQMKVGEETLKSHPHVFELAQVVAKECGGLPLAL 358 (911)
Q Consensus 303 ~~~~~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~GlPLai 358 (911)
..+.....+++++++.++-..++.+++..... .--++...-|++.++|-.-.+
T Consensus 149 SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l---~l~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 149 SRLAQCIRIGLPVLDDVARAAVLRERAQRRGL---ALDEAAIDWLLTHGERELAGL 201 (233)
T ss_pred HHHhcCceEEecCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHhCCCCHHHH
Confidence 23334568899999999999999987643221 122466777888887755433
No 66
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.34 E-value=4.6e-05 Score=82.86 Aligned_cols=196 Identities=16% Similarity=0.174 Sum_probs=129.2
Q ss_pred ccchHHHHHHHHHHhcc----CCceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCccChHHHHHHHHHHc
Q 002538 158 VKGLESTLEDVWRCLVE----ESAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDLQIEKNQEIIGKKI 233 (911)
Q Consensus 158 ~~Gr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l 233 (911)
+.+|+.+++++...|.. ....-+.|+|..|+|||+.++.+.+.........+ +++|.+-...+..+++..|+.++
T Consensus 19 l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~-~~yINc~~~~t~~~i~~~i~~~~ 97 (366)
T COG1474 19 LPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVE-VVYINCLELRTPYQVLSKILNKL 97 (366)
T ss_pred ccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCc-eEEEeeeeCCCHHHHHHHHHHHc
Confidence 56999999999888753 33445899999999999999999999832222233 88999999999999999999999
Q ss_pred CCCCCccCCCCHHHHHHHHHHHhh--cceEEEEEccccccccc-----ccccCCCCCCCCCCCcEEE--EEcCchhhh--
Q 002538 234 GLFDDSWKNKNLDERALEIFKILR--EKKFVLLLDDIWERVNL-----NKVGVPLPSPQSTTASKVV--FTTRFINVC-- 302 (911)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~l~~~L~--~k~~LlVlDdv~~~~~~-----~~~~~~l~~~~~~~gs~Ii--vTtR~~~v~-- 302 (911)
+... .......+....+.+.+. ++.++||||+++....- -.+... .....++|+ ..+-+....
T Consensus 98 ~~~p--~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~----~~~~~~~v~vi~i~n~~~~~~~ 171 (366)
T COG1474 98 GKVP--LTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRA----PGENKVKVSIIAVSNDDKFLDY 171 (366)
T ss_pred CCCC--CCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhh----ccccceeEEEEEEeccHHHHHH
Confidence 6221 245667778888888875 58899999999864322 122221 112245443 344444332
Q ss_pred ------hccCCcceEEccCCCHHHHHHHHHHHhC---CcccCCCccHHHHHHHHHHHhCC-cchHHHHHH
Q 002538 303 ------GSMEAHRNFKVECLTEKHAWELFQMKVG---EETLKSHPHVFELAQVVAKECGG-LPLALITIG 362 (911)
Q Consensus 303 ------~~~~~~~~~~l~~L~~~es~~Lf~~~a~---~~~~~~~~~~~~~~~~i~~~c~G-lPLai~~~g 362 (911)
..++.. .+...|-+.+|-...+..++. ... ...+..-++...++..-+| .=.||.++-
T Consensus 172 ld~rv~s~l~~~-~I~F~pY~a~el~~Il~~R~~~~~~~~-~~~~~vl~lia~~~a~~~GDAR~aidilr 239 (366)
T COG1474 172 LDPRVKSSLGPS-EIVFPPYTAEELYDILRERVEEGFSAG-VIDDDVLKLIAALVAAESGDARKAIDILR 239 (366)
T ss_pred hhhhhhhccCcc-eeeeCCCCHHHHHHHHHHHHHhhccCC-CcCccHHHHHHHHHHHcCccHHHHHHHHH
Confidence 222222 377899999999999988773 233 2233344444444444444 445666554
No 67
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=3.2e-08 Score=98.33 Aligned_cols=182 Identities=20% Similarity=0.153 Sum_probs=122.9
Q ss_pred CCCcEEEccCCCCc--ccCccccCcCCCCEEeccCCCcCC-cchhhhccCcCcEEecCCCccccccC-hhhhccCccCcE
Q 002538 563 PSLKVLNLSFTKRH--KFPSGISKLASLQLIDLSYTSIRG-LPEELKALINLKCLNLDQTKFLVTIP-RHLISSFSMLHV 638 (911)
Q Consensus 563 ~~L~~L~L~~~~~~--~lp~~i~~l~~L~~L~L~~~~i~~-lp~~l~~L~~L~~L~L~~~~~l~~lp-~~~i~~l~~L~~ 638 (911)
..|++|||++..++ .+-.-+..|..|+.|.|.++++.+ +...+.+-.+|+.|++++|.-+++.. .-++.+|+.|+.
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 46999999999876 344556788999999999999988 77889999999999999997665544 234789999999
Q ss_pred EEecCCCCCcccccCCCcccccCcccchhhhcC-CCCCcEEEEEecCchhhHhhhhcccccCcceEEEeeeccCCCceee
Q 002538 639 LRMFGSGSSVFHEASGDSILFDGGELLADELLG-LKYLEVLDITLRSRHALQSVLSSHKLRSCTQAIFLQCFKDSKSIYA 717 (911)
Q Consensus 639 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-L~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~ 717 (911)
|+++.|... .........+ -++|..|+++++...-.. -..
T Consensus 265 LNlsWc~l~--------------~~~Vtv~V~hise~l~~LNlsG~rrnl~~-------------------------sh~ 305 (419)
T KOG2120|consen 265 LNLSWCFLF--------------TEKVTVAVAHISETLTQLNLSGYRRNLQK-------------------------SHL 305 (419)
T ss_pred cCchHhhcc--------------chhhhHHHhhhchhhhhhhhhhhHhhhhh-------------------------hHH
Confidence 999999765 1111111111 134555555432211000 011
Q ss_pred c-ccccccccceEeeccccccceeEecccCccccccccccCCccCEEEEecCCCCCC--CcccccCCCcceEeEeccc
Q 002538 718 A-ALADLKHLKKLCISQCEELEELKIDCTGEVKRMCQPYIFRSLNKVQIYSCPVLKD--LTFLVFAPNLKSIDVRSCS 792 (911)
Q Consensus 718 ~-~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~--l~~l~~l~~L~~L~L~~c~ 792 (911)
+ -...+|+|..|++++|..++.-....+ ..|+.|++|.++.|..+.- +-.+...|+|.+|++.+|-
T Consensus 306 ~tL~~rcp~l~~LDLSD~v~l~~~~~~~~---------~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 306 STLVRRCPNLVHLDLSDSVMLKNDCFQEF---------FKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred HHHHHhCCceeeeccccccccCchHHHHH---------HhcchheeeehhhhcCCChHHeeeeccCcceEEEEecccc
Confidence 1 234678999999999887763111111 3488999999999965432 1125678999999999874
No 68
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.29 E-value=2.9e-07 Score=94.10 Aligned_cols=94 Identities=17% Similarity=0.176 Sum_probs=45.6
Q ss_pred ccccccccceEeeccccccceeEecccCccccccccccCCccCEEEEecCCCCCCCc------c-cccCCCcceEeEecc
Q 002538 719 ALADLKHLKKLCISQCEELEELKIDCTGEVKRMCQPYIFRSLNKVQIYSCPVLKDLT------F-LVFAPNLKSIDVRSC 791 (911)
Q Consensus 719 ~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~------~-l~~l~~L~~L~L~~c 791 (911)
.+..+++|+.|+|.++.....- ...++ .....+++|+.|++.+| .+++=- . -...|+|+.|.+.+|
T Consensus 208 al~~~~~LevLdl~DNtft~eg-s~~La-----kaL~s~~~L~El~l~dc-ll~~~Ga~a~~~al~~~~p~L~vl~l~gN 280 (382)
T KOG1909|consen 208 ALEHCPHLEVLDLRDNTFTLEG-SVALA-----KALSSWPHLRELNLGDC-LLENEGAIAFVDALKESAPSLEVLELAGN 280 (382)
T ss_pred HHHhCCcceeeecccchhhhHH-HHHHH-----HHhcccchheeeccccc-ccccccHHHHHHHHhccCCCCceeccCcc
Confidence 5566777777777766322210 00000 00123667777777777 444311 0 124677777777775
Q ss_pred cccccccccCcchhhhhhcCCCCcccccceeccccc
Q 002538 792 SVMKEIVSAGKSADIAEMMGNMSPFAKLQNLQLVRL 827 (911)
Q Consensus 792 ~~l~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~ 827 (911)
..-.+-.. .+..+....|.|+.|.|++|
T Consensus 281 eIt~da~~--------~la~~~~ek~dL~kLnLngN 308 (382)
T KOG1909|consen 281 EITRDAAL--------ALAACMAEKPDLEKLNLNGN 308 (382)
T ss_pred hhHHHHHH--------HHHHHHhcchhhHHhcCCcc
Confidence 42221100 11113334666666666664
No 69
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.29 E-value=1.3e-07 Score=96.67 Aligned_cols=199 Identities=16% Similarity=0.108 Sum_probs=109.5
Q ss_pred ccCcCcEEecCCCccccccCh---hhhccCccCcEEEecCCCCCcccccCCCcccccCccc---------chhhhcCCCC
Q 002538 607 ALINLKCLNLDQTKFLVTIPR---HLISSFSMLHVLRMFGSGSSVFHEASGDSILFDGGEL---------LADELLGLKY 674 (911)
Q Consensus 607 ~L~~L~~L~L~~~~~l~~lp~---~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~---------~~~~l~~L~~ 674 (911)
..++|+.|||++|.+-...++ ..+.+++.|++|++.+|+.... .+.. ......+-++
T Consensus 90 ~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~-----------ag~~l~~al~~l~~~kk~~~~~~ 158 (382)
T KOG1909|consen 90 GCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPE-----------AGGRLGRALFELAVNKKAASKPK 158 (382)
T ss_pred cCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChh-----------HHHHHHHHHHHHHHHhccCCCcc
Confidence 445677777777754333332 2356677777777777765400 0111 1122334456
Q ss_pred CcEEEEEecCchhhHhhhhcccccCcceEEEeeeccCCCceeecccccccccceEeeccccccceeEecccCcccccccc
Q 002538 675 LEVLDITLRSRHALQSVLSSHKLRSCTQAIFLQCFKDSKSIYAAALADLKHLKKLCISQCEELEELKIDCTGEVKRMCQP 754 (911)
Q Consensus 675 L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~ 754 (911)
|+++....|...+...... ...+...+.|+.+.+..+..... ..... ....
T Consensus 159 Lrv~i~~rNrlen~ga~~~-----------------------A~~~~~~~~leevr~~qN~I~~e-G~~al-----~eal 209 (382)
T KOG1909|consen 159 LRVFICGRNRLENGGATAL-----------------------AEAFQSHPTLEEVRLSQNGIRPE-GVTAL-----AEAL 209 (382)
T ss_pred eEEEEeeccccccccHHHH-----------------------HHHHHhccccceEEEecccccCc-hhHHH-----HHHH
Confidence 6666666554433221110 01345567788888876532221 11000 0111
Q ss_pred ccCCccCEEEEecCCCCCCC-----cccccCCCcceEeEecccccccccccCcchhhhhhcCCCCcccccceeccccccc
Q 002538 755 YIFRSLNKVQIYSCPVLKDL-----TFLVFAPNLKSIDVRSCSVMKEIVSAGKSADIAEMMGNMSPFAKLQNLQLVRLQN 829 (911)
Q Consensus 755 ~~~~~L~~L~L~~c~~l~~l-----~~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~ 829 (911)
..+++|+.|+|.++..-..- ..+..+|+|++|++++|..-.. +...+..- ....+|+|+.|.+.++.-
T Consensus 210 ~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~-----Ga~a~~~a--l~~~~p~L~vl~l~gNeI 282 (382)
T KOG1909|consen 210 EHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENE-----GAIAFVDA--LKESAPSLEVLELAGNEI 282 (382)
T ss_pred HhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccc-----cHHHHHHH--HhccCCCCceeccCcchh
Confidence 45899999999998432221 1356788999999999963221 11111111 223489999999988642
Q ss_pred ccc----ccCCcccCCccceEeccccc
Q 002538 830 LKS----IYWKLVPFPHLKEIIVHQCN 852 (911)
Q Consensus 830 L~~----~~~~~~~~p~L~~L~i~~C~ 852 (911)
-.. +...+...|.|+.|++++|.
T Consensus 283 t~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 283 TRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred HHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 111 12234458999999999974
No 70
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.27 E-value=1.8e-06 Score=80.21 Aligned_cols=117 Identities=23% Similarity=0.241 Sum_probs=79.3
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhhccC--CCCCceEEEEEeCCccChHHHHHHHHHHcCCCCCccCCCCHHHHHHHHH
Q 002538 176 SAGIIGLYGMGGVGKTTLLTRINNKFLES--PSDFDCVIWVVVSKDLQIEKNQEIIGKKIGLFDDSWKNKNLDERALEIF 253 (911)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 253 (911)
+-+++.|+|.+|+|||++++.+.+..... ...-..++|+.+....+...+...|+.+++..... ..+..++...+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~l~~~~~ 80 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS--RQTSDELRSLLI 80 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS--TS-HHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc--cCCHHHHHHHHH
Confidence 34688999999999999999999886210 00144577999988889999999999999876532 356777778888
Q ss_pred HHhhcce-EEEEEcccccc-c--ccccccCCCCCCCCCCCcEEEEEcCc
Q 002538 254 KILREKK-FVLLLDDIWER-V--NLNKVGVPLPSPQSTTASKVVFTTRF 298 (911)
Q Consensus 254 ~~L~~k~-~LlVlDdv~~~-~--~~~~~~~~l~~~~~~~gs~IivTtR~ 298 (911)
+.+...+ .+||+||++.. . .++.+.. + ....+.+||+..+.
T Consensus 81 ~~l~~~~~~~lviDe~~~l~~~~~l~~l~~-l---~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 81 DALDRRRVVLLVIDEADHLFSDEFLEFLRS-L---LNESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHCTEEEEEEETTHHHHTHHHHHHHHH-H---TCSCBEEEEEEESS
T ss_pred HHHHhcCCeEEEEeChHhcCCHHHHHHHHH-H---HhCCCCeEEEEECh
Confidence 8887655 59999999765 2 1222322 1 12556777777663
No 71
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.26 E-value=1.2e-05 Score=88.50 Aligned_cols=192 Identities=11% Similarity=0.086 Sum_probs=106.2
Q ss_pred ccccchHHHHHHHHHHhccCCceEEEEEcCCCChHHHHHHHHHhhhccCCCCCc-eEEEEEeCCccChHHHHHHHHH---
Q 002538 156 AIVKGLESTLEDVWRCLVEESAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFD-CVIWVVVSKDLQIEKNQEIIGK--- 231 (911)
Q Consensus 156 ~~~~Gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~-~~~wv~~s~~~~~~~~~~~i~~--- 231 (911)
+.++|++..++.+.+++..+..+.+.++|..|+||||+|+.+.+... ...+. ..+.++++.-.+. ....+..
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~--~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~ 90 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELY--GDPWENNFTEFNVADFFDQ--GKKYLVEDPR 90 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhc--CcccccceEEechhhhhhc--chhhhhcCcc
Confidence 34569999999999999877777888999999999999999998862 22222 2344443321100 0000000
Q ss_pred ---HcCCCCCccCCCCHHHHHHHHHHHh------hcceEEEEEcccccccc--cccccCCCCCCCCCCCcEEEEEcCchh
Q 002538 232 ---KIGLFDDSWKNKNLDERALEIFKIL------REKKFVLLLDDIWERVN--LNKVGVPLPSPQSTTASKVVFTTRFIN 300 (911)
Q Consensus 232 ---~l~~~~~~~~~~~~~~~~~~l~~~L------~~k~~LlVlDdv~~~~~--~~~~~~~l~~~~~~~gs~IivTtR~~~ 300 (911)
.++... . ...........+.+.. .+.+-+||+||+..... ...+...+. .....+++|+||.+..
T Consensus 91 ~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le--~~~~~~~~Il~~~~~~ 166 (337)
T PRK12402 91 FAHFLGTDK-R-IRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIME--QYSRTCRFIIATRQPS 166 (337)
T ss_pred hhhhhhhhh-h-hccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHH--hccCCCeEEEEeCChh
Confidence 000000 0 0001111111111111 13445899999975421 222222222 2233567777765432
Q ss_pred -hhhcc-CCcceEEccCCCHHHHHHHHHHHhCCcccCCCccHHHHHHHHHHHhCCcchHH
Q 002538 301 -VCGSM-EAHRNFKVECLTEKHAWELFQMKVGEETLKSHPHVFELAQVVAKECGGLPLAL 358 (911)
Q Consensus 301 -v~~~~-~~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~GlPLai 358 (911)
+...+ +....+++.+++.++....+.+.+...... --.+....+++.++|.+-.+
T Consensus 167 ~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~---~~~~al~~l~~~~~gdlr~l 223 (337)
T PRK12402 167 KLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVD---YDDDGLELIAYYAGGDLRKA 223 (337)
T ss_pred hCchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHH
Confidence 22222 223568899999999988888876433311 12467788888898876543
No 72
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.25 E-value=1.1e-05 Score=94.39 Aligned_cols=182 Identities=18% Similarity=0.172 Sum_probs=108.4
Q ss_pred ccccchHHHHHHHHHHhccCCceE-EEEEcCCCChHHHHHHHHHhhhccCCCCCc-------------------eEEEEE
Q 002538 156 AIVKGLESTLEDVWRCLVEESAGI-IGLYGMGGVGKTTLLTRINNKFLESPSDFD-------------------CVIWVV 215 (911)
Q Consensus 156 ~~~~Gr~~~~~~l~~~L~~~~~~v-i~I~G~gGiGKTtLa~~v~~~~~~~~~~f~-------------------~~~wv~ 215 (911)
..|+|.+..++.+.+++..+++.. +.++|..|+||||+|+.+++... -..... -++++.
T Consensus 16 ddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Ln-ce~~~~~~pCg~C~sC~~i~~g~~~DviEid 94 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLN-CEQGVTATPCGVCSSCVEIAQGRFVDLIEVD 94 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhcc-CccCCCCCCCCCchHHHHHhcCCCceEEEec
Confidence 346799999999999998877765 57999999999999999998862 111110 011111
Q ss_pred eCCccChHHHHHHHHHHcCCCCCccCCCCHHHHHHHHHH-HhhcceEEEEEcccccc--cccccccCCCCCCCCCCCcEE
Q 002538 216 VSKDLQIEKNQEIIGKKIGLFDDSWKNKNLDERALEIFK-ILREKKFVLLLDDIWER--VNLNKVGVPLPSPQSTTASKV 292 (911)
Q Consensus 216 ~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~L~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~gs~I 292 (911)
.+....+. +..++...+.. -..+++-++|||++... .....+...+. ......++
T Consensus 95 Aas~~kVD--------------------dIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLE--EPP~~vrF 152 (944)
T PRK14949 95 AASRTKVD--------------------DTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLE--EPPEHVKF 152 (944)
T ss_pred cccccCHH--------------------HHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHh--ccCCCeEE
Confidence 11000011 11122222211 12467779999999764 23344333332 22335556
Q ss_pred EEEc-Cchhhhhc-cCCcceEEccCCCHHHHHHHHHHHhCCcccCCCccHHHHHHHHHHHhCCcch-HHHHHHh
Q 002538 293 VFTT-RFINVCGS-MEAHRNFKVECLTEKHAWELFQMKVGEETLKSHPHVFELAQVVAKECGGLPL-ALITIGR 363 (911)
Q Consensus 293 ivTt-R~~~v~~~-~~~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~GlPL-ai~~~g~ 363 (911)
|++| ....+... ......|++++|+.++....+.+.+..... .--.+....|++.++|.|- |+..+-.
T Consensus 153 ILaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI---~~edeAL~lIA~~S~Gd~R~ALnLLdQ 223 (944)
T PRK14949 153 LLATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQL---PFEAEALTLLAKAANGSMRDALSLTDQ 223 (944)
T ss_pred EEECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 5544 44444322 233478999999999999998886643221 1224677889999999886 4444433
No 73
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.24 E-value=2e-05 Score=89.57 Aligned_cols=197 Identities=18% Similarity=0.115 Sum_probs=111.8
Q ss_pred cccchHHHHHHHHHHhccCCce-EEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCccChHHHHHHHHHHcCC
Q 002538 157 IVKGLESTLEDVWRCLVEESAG-IIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDLQIEKNQEIIGKKIGL 235 (911)
Q Consensus 157 ~~~Gr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 235 (911)
.++|.+..++.+.+++..++.. .+.++|++|+||||+|+.+++.. .-.+.+...+|.|.+...- ......-...+..
T Consensus 15 dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l-~c~~~~~~~cg~C~sc~~i-~~~~h~dv~el~~ 92 (504)
T PRK14963 15 EVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAV-NCSGEDPKPCGECESCLAV-RRGAHPDVLEIDA 92 (504)
T ss_pred HhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHH-hccCCCCCCCCcChhhHHH-hcCCCCceEEecc
Confidence 4679999999999998877655 55899999999999999999886 2222233334433221000 0000000000000
Q ss_pred CCCccCCCCHHHHHHHHHHHh-----hcceEEEEEcccccc--cccccccCCCCCCCCCCCcEEEEEcC-chhhhhcc-C
Q 002538 236 FDDSWKNKNLDERALEIFKIL-----REKKFVLLLDDIWER--VNLNKVGVPLPSPQSTTASKVVFTTR-FINVCGSM-E 306 (911)
Q Consensus 236 ~~~~~~~~~~~~~~~~l~~~L-----~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~gs~IivTtR-~~~v~~~~-~ 306 (911)
. .....+.+ ..+.+.+ .+++-++|+|+++.. ..+..+...+. .....+.+|++|. ...+.... +
T Consensus 93 ~----~~~~vd~i-R~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LE--ep~~~t~~Il~t~~~~kl~~~I~S 165 (504)
T PRK14963 93 A----SNNSVEDV-RDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLE--EPPEHVIFILATTEPEKMPPTILS 165 (504)
T ss_pred c----ccCCHHHH-HHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHH--hCCCCEEEEEEcCChhhCChHHhc
Confidence 0 01112221 1222222 346669999999754 23444444443 2233455555554 33333222 3
Q ss_pred CcceEEccCCCHHHHHHHHHHHhCCcccCCCccHHHHHHHHHHHhCCcch-HHHHHHhhh
Q 002538 307 AHRNFKVECLTEKHAWELFQMKVGEETLKSHPHVFELAQVVAKECGGLPL-ALITIGRAM 365 (911)
Q Consensus 307 ~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~GlPL-ai~~~g~~l 365 (911)
....+++.+++.++....+.+.+...+... -.+....|++.++|.+- |+..+-..+
T Consensus 166 Rc~~~~f~~ls~~el~~~L~~i~~~egi~i---~~~Al~~ia~~s~GdlR~aln~Lekl~ 222 (504)
T PRK14963 166 RTQHFRFRRLTEEEIAGKLRRLLEAEGREA---EPEALQLVARLADGAMRDAESLLERLL 222 (504)
T ss_pred ceEEEEecCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 356899999999999999988775433111 24677889999999885 444444433
No 74
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.23 E-value=6.5e-06 Score=84.59 Aligned_cols=170 Identities=14% Similarity=0.134 Sum_probs=98.2
Q ss_pred cccccchHHH-HHHHHHHhccCCceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCccChHHHHHHHHHHc
Q 002538 155 EAIVKGLEST-LEDVWRCLVEESAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDLQIEKNQEIIGKKI 233 (911)
Q Consensus 155 ~~~~~Gr~~~-~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l 233 (911)
+..++|.+.. +..+.++......+.+.|+|+.|+|||+|++.+++... ..-..+.++++.....
T Consensus 22 d~f~~~~n~~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~---~~~~~v~y~~~~~~~~------------ 86 (235)
T PRK08084 22 ASFYPGDNDSLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELS---QRGRAVGYVPLDKRAW------------ 86 (235)
T ss_pred cccccCccHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHH---hCCCeEEEEEHHHHhh------------
Confidence 3455564333 33333443344557899999999999999999999862 2234566665532100
Q ss_pred CCCCCccCCCCHHHHHHHHHHHhhcceEEEEEcccccc---cccccc-cCCCCCCCCCCC-cEEEEEcCchhh-------
Q 002538 234 GLFDDSWKNKNLDERALEIFKILREKKFVLLLDDIWER---VNLNKV-GVPLPSPQSTTA-SKVVFTTRFINV------- 301 (911)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~---~~~~~~-~~~l~~~~~~~g-s~IivTtR~~~v------- 301 (911)
... .+.+.+.. --+|++||+... ..|+.. ...+.. ....| .++|+||+...-
T Consensus 87 ----------~~~----~~~~~~~~-~dlliiDdi~~~~~~~~~~~~lf~l~n~-~~e~g~~~li~ts~~~p~~l~~~~~ 150 (235)
T PRK08084 87 ----------FVP----EVLEGMEQ-LSLVCIDNIECIAGDELWEMAIFDLYNR-ILESGRTRLLITGDRPPRQLNLGLP 150 (235)
T ss_pred ----------hhH----HHHHHhhh-CCEEEEeChhhhcCCHHHHHHHHHHHHH-HHHcCCCeEEEeCCCChHHcCcccH
Confidence 000 11111111 238899999653 234321 111110 01123 479999875532
Q ss_pred --hhccCCcceEEccCCCHHHHHHHHHHHhCCcccCCCccHHHHHHHHHHHhCCcchHH
Q 002538 302 --CGSMEAHRNFKVECLTEKHAWELFQMKVGEETLKSHPHVFELAQVVAKECGGLPLAL 358 (911)
Q Consensus 302 --~~~~~~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~GlPLai 358 (911)
...+....++++++++.++-.+++.+++..... .--+++..-|++.+.|..-++
T Consensus 151 ~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~---~l~~~v~~~L~~~~~~d~r~l 206 (235)
T PRK08084 151 DLASRLDWGQIYKLQPLSDEEKLQALQLRARLRGF---ELPEDVGRFLLKRLDREMRTL 206 (235)
T ss_pred HHHHHHhCCceeeecCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHhhcCCHHHH
Confidence 334455678999999999999998886643221 122467777888877755443
No 75
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.23 E-value=1e-06 Score=69.15 Aligned_cols=57 Identities=32% Similarity=0.541 Sum_probs=30.5
Q ss_pred CCcEEEccCCCCcccC-ccccCcCCCCEEeccCCCcCCcch-hhhccCcCcEEecCCCc
Q 002538 564 SLKVLNLSFTKRHKFP-SGISKLASLQLIDLSYTSIRGLPE-ELKALINLKCLNLDQTK 620 (911)
Q Consensus 564 ~L~~L~L~~~~~~~lp-~~i~~l~~L~~L~L~~~~i~~lp~-~l~~L~~L~~L~L~~~~ 620 (911)
+|++|++++|++..+| ..+..+++|++|++++|.++.+|. .+..+++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 4555555555555554 344555555555555555555432 34555555555555553
No 76
>PLN03025 replication factor C subunit; Provisional
Probab=98.23 E-value=1.1e-05 Score=87.20 Aligned_cols=177 Identities=14% Similarity=0.128 Sum_probs=102.5
Q ss_pred cccchHHHHHHHHHHhccCCceEEEEEcCCCChHHHHHHHHHhhhccCCCCCc-eEEEEEeCCccChHHHHHHHHHHcCC
Q 002538 157 IVKGLESTLEDVWRCLVEESAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFD-CVIWVVVSKDLQIEKNQEIIGKKIGL 235 (911)
Q Consensus 157 ~~~Gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~-~~~wv~~s~~~~~~~~~~~i~~~l~~ 235 (911)
.++|.++.++.+.+++..++.+.+.++|++|+||||+|+.+++... ...|. .++-+..+...+...+...| +.+..
T Consensus 14 ~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~--~~~~~~~~~eln~sd~~~~~~vr~~i-~~~~~ 90 (319)
T PLN03025 14 DIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELL--GPNYKEAVLELNASDDRGIDVVRNKI-KMFAQ 90 (319)
T ss_pred HhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHh--cccCccceeeecccccccHHHHHHHH-HHHHh
Confidence 3569988888888888777777788999999999999999998861 22232 22222233222222221111 11100
Q ss_pred CCCccCCCCHHHHHHHHHHHhhcceEEEEEccccccc--ccccccCCCCCCCCCCCcEEEEEcCch-hhhhcc-CCcceE
Q 002538 236 FDDSWKNKNLDERALEIFKILREKKFVLLLDDIWERV--NLNKVGVPLPSPQSTTASKVVFTTRFI-NVCGSM-EAHRNF 311 (911)
Q Consensus 236 ~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~gs~IivTtR~~-~v~~~~-~~~~~~ 311 (911)
... ..-.++.-++||||++... ....+...+. .....+++|+++... .+.... +....+
T Consensus 91 ~~~---------------~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE--~~~~~t~~il~~n~~~~i~~~L~SRc~~i 153 (319)
T PLN03025 91 KKV---------------TLPPGRHKIVILDEADSMTSGAQQALRRTME--IYSNTTRFALACNTSSKIIEPIQSRCAIV 153 (319)
T ss_pred ccc---------------cCCCCCeEEEEEechhhcCHHHHHHHHHHHh--cccCCceEEEEeCCccccchhHHHhhhcc
Confidence 000 0001356699999998642 1222222222 223456777766432 222111 123578
Q ss_pred EccCCCHHHHHHHHHHHhCCcccCCCccHHHHHHHHHHHhCCcch
Q 002538 312 KVECLTEKHAWELFQMKVGEETLKSHPHVFELAQVVAKECGGLPL 356 (911)
Q Consensus 312 ~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~GlPL 356 (911)
++.+++.++....+.+.+...+..- -.+....|++.++|..-
T Consensus 154 ~f~~l~~~~l~~~L~~i~~~egi~i---~~~~l~~i~~~~~gDlR 195 (319)
T PLN03025 154 RFSRLSDQEILGRLMKVVEAEKVPY---VPEGLEAIIFTADGDMR 195 (319)
T ss_pred cCCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHH
Confidence 9999999999988888775433211 14567888999988654
No 77
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.22 E-value=2.5e-05 Score=85.91 Aligned_cols=192 Identities=17% Similarity=0.168 Sum_probs=105.6
Q ss_pred ccccchHHHHHHHHHHhccCCce-EEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCccChHHHHHHHHHHcC
Q 002538 156 AIVKGLESTLEDVWRCLVEESAG-IIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDLQIEKNQEIIGKKIG 234 (911)
Q Consensus 156 ~~~~Gr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 234 (911)
..++|.+..++.+.+.+..++.+ .+.++|+.|+||||+|+.+++... ....... .....-..-..+.....
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~-c~~~~~~-------~pc~~c~~c~~~~~~~~ 87 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLN-CQNGITS-------NPCRKCIICKEIEKGLC 87 (363)
T ss_pred hhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhc-CCCCCCC-------CCCCCCHHHHHHhcCCC
Confidence 34679999999999998876654 568999999999999999998762 1111100 00000000000100000
Q ss_pred CCC---CccCCCCHHHHHHHHHHHh-----hcceEEEEEccccccc--ccccccCCCCCCCCCCCcEEEEEcCchh-hhh
Q 002538 235 LFD---DSWKNKNLDERALEIFKIL-----REKKFVLLLDDIWERV--NLNKVGVPLPSPQSTTASKVVFTTRFIN-VCG 303 (911)
Q Consensus 235 ~~~---~~~~~~~~~~~~~~l~~~L-----~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~gs~IivTtR~~~-v~~ 303 (911)
..- +.......++. ..+.+.+ .+++-++|+|++.... .+..+...+. ......++|++|.+.+ +..
T Consensus 88 ~d~~~~~~~~~~~v~~i-r~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lE--e~~~~~~fIl~t~~~~~l~~ 164 (363)
T PRK14961 88 LDLIEIDAASRTKVEEM-REILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLE--EPPQHIKFILATTDVEKIPK 164 (363)
T ss_pred CceEEecccccCCHHHH-HHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHh--cCCCCeEEEEEcCChHhhhH
Confidence 000 00000111221 1222222 2455699999997653 3444433333 3334566777665433 322
Q ss_pred c-cCCcceEEccCCCHHHHHHHHHHHhCCcccCCCccHHHHHHHHHHHhCCcch-HHHHH
Q 002538 304 S-MEAHRNFKVECLTEKHAWELFQMKVGEETLKSHPHVFELAQVVAKECGGLPL-ALITI 361 (911)
Q Consensus 304 ~-~~~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~GlPL-ai~~~ 361 (911)
. .+....+++.+++.++..+.+.+.+...+. .--++....|++.++|.|- |+..+
T Consensus 165 tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~---~i~~~al~~ia~~s~G~~R~al~~l 221 (363)
T PRK14961 165 TILSRCLQFKLKIISEEKIFNFLKYILIKESI---DTDEYALKLIAYHAHGSMRDALNLL 221 (363)
T ss_pred HHHhhceEEeCCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 2 223467899999999998888776543221 1123567789999999886 43333
No 78
>PRK09087 hypothetical protein; Validated
Probab=98.20 E-value=1.1e-05 Score=82.07 Aligned_cols=163 Identities=12% Similarity=0.051 Sum_probs=93.3
Q ss_pred cccccch-HHHHHHHHHHhccCCceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCccChHHHHHHHHHHc
Q 002538 155 EAIVKGL-ESTLEDVWRCLVEESAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDLQIEKNQEIIGKKI 233 (911)
Q Consensus 155 ~~~~~Gr-~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l 233 (911)
+..++|- +...-.+++.+.....+.+.|+|..|+|||+|++.+++.. .. .+++.. .....+..
T Consensus 21 ~~Fi~~~~N~~a~~~l~~~~~~~~~~l~l~G~~GsGKThLl~~~~~~~-~~-------~~i~~~------~~~~~~~~-- 84 (226)
T PRK09087 21 DDLLVTESNRAAVSLVDHWPNWPSPVVVLAGPVGSGKTHLASIWREKS-DA-------LLIHPN------EIGSDAAN-- 84 (226)
T ss_pred hceeecCchHHHHHHHHhcccCCCCeEEEECCCCCCHHHHHHHHHHhc-CC-------EEecHH------HcchHHHH--
Confidence 3445543 3333223333223334679999999999999999988764 11 133211 11111111
Q ss_pred CCCCCccCCCCHHHHHHHHHHHhhcceEEEEEccccccc-ccccccCCCCCCCCCCCcEEEEEcCc---------hhhhh
Q 002538 234 GLFDDSWKNKNLDERALEIFKILREKKFVLLLDDIWERV-NLNKVGVPLPSPQSTTASKVVFTTRF---------INVCG 303 (911)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~-~~~~~~~~l~~~~~~~gs~IivTtR~---------~~v~~ 303 (911)
.+.+ -+|++||+.... +-+.+...+.. ....|..||+|++. ++...
T Consensus 85 ---------------------~~~~--~~l~iDDi~~~~~~~~~lf~l~n~-~~~~g~~ilits~~~p~~~~~~~~dL~S 140 (226)
T PRK09087 85 ---------------------AAAE--GPVLIEDIDAGGFDETGLFHLINS-VRQAGTSLLMTSRLWPSSWNVKLPDLKS 140 (226)
T ss_pred ---------------------hhhc--CeEEEECCCCCCCCHHHHHHHHHH-HHhCCCeEEEECCCChHHhccccccHHH
Confidence 1111 278889996431 11112211110 12346779998874 33334
Q ss_pred ccCCcceEEccCCCHHHHHHHHHHHhCCcccCCCccHHHHHHHHHHHhCCcchHHHH
Q 002538 304 SMEAHRNFKVECLTEKHAWELFQMKVGEETLKSHPHVFELAQVVAKECGGLPLALIT 360 (911)
Q Consensus 304 ~~~~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~ 360 (911)
.+....++++++++.++-.+++++++...... --+++..-|++.+.|..-++..
T Consensus 141 Rl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~---l~~ev~~~La~~~~r~~~~l~~ 194 (226)
T PRK09087 141 RLKAATVVEIGEPDDALLSQVIFKLFADRQLY---VDPHVVYYLVSRMERSLFAAQT 194 (226)
T ss_pred HHhCCceeecCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHhhhhHHHHHH
Confidence 44566789999999999999999888543211 2257778888888877665543
No 79
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.19 E-value=2e-05 Score=89.52 Aligned_cols=195 Identities=13% Similarity=0.079 Sum_probs=108.2
Q ss_pred ccccchHHHHHHHHHHhccCCc-eEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCccChHHHHHHHHHHcC
Q 002538 156 AIVKGLESTLEDVWRCLVEESA-GIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDLQIEKNQEIIGKKIG 234 (911)
Q Consensus 156 ~~~~Gr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 234 (911)
..++|.+..++.+.+++..++. ..+.++|+.|+||||+|+.+++... -....+ .. .++.-..-+.+...-.
T Consensus 15 ddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~Ln-C~~~~~------~~-pCg~C~sC~~I~~g~h 86 (702)
T PRK14960 15 NELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLN-CETGVT------ST-PCEVCATCKAVNEGRF 86 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhC-CCcCCC------CC-CCccCHHHHHHhcCCC
Confidence 3467999999999999987764 5778999999999999999988762 111110 00 0000000000100000
Q ss_pred CCC---CccCCCCHHHHHHHHHH----HhhcceEEEEEccccccc--ccccccCCCCCCCCCCCcEEEEEcCchh-hh-h
Q 002538 235 LFD---DSWKNKNLDERALEIFK----ILREKKFVLLLDDIWERV--NLNKVGVPLPSPQSTTASKVVFTTRFIN-VC-G 303 (911)
Q Consensus 235 ~~~---~~~~~~~~~~~~~~l~~----~L~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~gs~IivTtR~~~-v~-~ 303 (911)
..- +.......++..+.+.. -..+++-++|+|+|.... ....+...+. ....+.++|++|.+.. +. .
T Consensus 87 pDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLE--EPP~~v~FILaTtd~~kIp~T 164 (702)
T PRK14960 87 IDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLE--EPPEHVKFLFATTDPQKLPIT 164 (702)
T ss_pred CceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHh--cCCCCcEEEEEECChHhhhHH
Confidence 000 00001122222211111 123566799999997642 3333333333 2234566777665543 22 1
Q ss_pred ccCCcceEEccCCCHHHHHHHHHHHhCCcccCCCccHHHHHHHHHHHhCCcch-HHHHHHh
Q 002538 304 SMEAHRNFKVECLTEKHAWELFQMKVGEETLKSHPHVFELAQVVAKECGGLPL-ALITIGR 363 (911)
Q Consensus 304 ~~~~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~GlPL-ai~~~g~ 363 (911)
..+....+++++++.++..+.+.+.+..... .--.+....|++.++|.+- |+..+-.
T Consensus 165 IlSRCq~feFkpLs~eEI~k~L~~Il~kEgI---~id~eAL~~IA~~S~GdLRdALnLLDQ 222 (702)
T PRK14960 165 VISRCLQFTLRPLAVDEITKHLGAILEKEQI---AADQDAIWQIAESAQGSLRDALSLTDQ 222 (702)
T ss_pred HHHhhheeeccCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 2234568999999999999988877654331 1224667889999999775 4444333
No 80
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.18 E-value=2.6e-05 Score=85.02 Aligned_cols=180 Identities=12% Similarity=0.117 Sum_probs=103.6
Q ss_pred ccchHHHHHHHHHHhccCCceEEEEEcCCCChHHHHHHHHHhhhccCCCCCce-EEEEEeCCccChHHHHHHHHHHcCCC
Q 002538 158 VKGLESTLEDVWRCLVEESAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDC-VIWVVVSKDLQIEKNQEIIGKKIGLF 236 (911)
Q Consensus 158 ~~Gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~-~~wv~~s~~~~~~~~~~~i~~~l~~~ 236 (911)
++|+++.++.+.+++.....+.+.++|..|+||||+|+.+++... ...+.. .+-+..+.......+...+.......
T Consensus 19 ~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~--~~~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~ 96 (319)
T PRK00440 19 IVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELY--GEDWRENFLELNASDERGIDVIRNKIKEFARTA 96 (319)
T ss_pred hcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHc--CCccccceEEeccccccchHHHHHHHHHHHhcC
Confidence 569999999999999877777789999999999999999998862 122211 11122222212111111111110000
Q ss_pred CCccCCCCHHHHHHHHHHHhhcceEEEEEccccccc--ccccccCCCCCCCCCCCcEEEEEcCch-hhhhc-cCCcceEE
Q 002538 237 DDSWKNKNLDERALEIFKILREKKFVLLLDDIWERV--NLNKVGVPLPSPQSTTASKVVFTTRFI-NVCGS-MEAHRNFK 312 (911)
Q Consensus 237 ~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~gs~IivTtR~~-~v~~~-~~~~~~~~ 312 (911)
. .....+-++++|+++... ....+...+. .....+++|+++... .+... ......++
T Consensus 97 ~-----------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le--~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~ 157 (319)
T PRK00440 97 P-----------------VGGAPFKIIFLDEADNLTSDAQQALRRTME--MYSQNTRFILSCNYSSKIIDPIQSRCAVFR 157 (319)
T ss_pred C-----------------CCCCCceEEEEeCcccCCHHHHHHHHHHHh--cCCCCCeEEEEeCCccccchhHHHHhheee
Confidence 0 001235589999986542 2222322222 223346677766432 22111 12234689
Q ss_pred ccCCCHHHHHHHHHHHhCCcccCCCccHHHHHHHHHHHhCCcchH-HHHH
Q 002538 313 VECLTEKHAWELFQMKVGEETLKSHPHVFELAQVVAKECGGLPLA-LITI 361 (911)
Q Consensus 313 l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~GlPLa-i~~~ 361 (911)
+.+++.++....+.+.+...... --.+....+++.++|.+-- +..+
T Consensus 158 ~~~l~~~ei~~~l~~~~~~~~~~---i~~~al~~l~~~~~gd~r~~~~~l 204 (319)
T PRK00440 158 FSPLKKEAVAERLRYIAENEGIE---ITDDALEAIYYVSEGDMRKAINAL 204 (319)
T ss_pred eCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 99999999988888877543321 1246778889999998764 3333
No 81
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.18 E-value=4.5e-06 Score=88.92 Aligned_cols=100 Identities=17% Similarity=0.157 Sum_probs=67.4
Q ss_pred HHHHHhcc-CCceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCcc--ChHHHHHHHHHHcCCCCCccCCC
Q 002538 167 DVWRCLVE-ESAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDL--QIEKNQEIIGKKIGLFDDSWKNK 243 (911)
Q Consensus 167 ~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~--~~~~~~~~i~~~l~~~~~~~~~~ 243 (911)
++++.+.. ++-...+|+|++|+||||||+++|+.. . ..+|+.++||.+++.. .+.++++.+...+-... ++..
T Consensus 158 rvID~l~PIGkGQR~lIvgppGvGKTTLaK~Ian~I-~-~nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st--~d~~ 233 (416)
T PRK09376 158 RIIDLIAPIGKGQRGLIVAPPKAGKTVLLQNIANSI-T-TNHPEVHLIVLLIDERPEEVTDMQRSVKGEVVAST--FDEP 233 (416)
T ss_pred eeeeeecccccCceEEEeCCCCCChhHHHHHHHHHH-H-hhcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEEC--CCCC
Confidence 34444443 455688899999999999999999998 3 3489999999999887 77788888864322221 1111
Q ss_pred CHHHH-----HHHHHHH--hhcceEEEEEccccc
Q 002538 244 NLDER-----ALEIFKI--LREKKFVLLLDDIWE 270 (911)
Q Consensus 244 ~~~~~-----~~~l~~~--L~~k~~LlVlDdv~~ 270 (911)
..... +-...++ -.|++++|++|++..
T Consensus 234 ~~~~~~~a~~~ie~Ae~~~e~G~dVlL~iDsItR 267 (416)
T PRK09376 234 AERHVQVAEMVIEKAKRLVEHGKDVVILLDSITR 267 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEEEEChHH
Confidence 11111 1112222 257999999999964
No 82
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.17 E-value=1.1e-05 Score=95.09 Aligned_cols=167 Identities=19% Similarity=0.230 Sum_probs=95.8
Q ss_pred ccchHHHHH---HHHHHhccCCceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCccChHHHHHHHHHHcC
Q 002538 158 VKGLESTLE---DVWRCLVEESAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDLQIEKNQEIIGKKIG 234 (911)
Q Consensus 158 ~~Gr~~~~~---~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 234 (911)
++|.+..+. .+.+.+..+..+.+.++|++|+||||+|+.+++.. ...|.. +..+. ....
T Consensus 30 ~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~---~~~f~~---lna~~-~~i~----------- 91 (725)
T PRK13341 30 FVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHT---RAHFSS---LNAVL-AGVK----------- 91 (725)
T ss_pred hcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHh---cCccee---ehhhh-hhhH-----------
Confidence 568887764 45566666777788999999999999999999876 344421 11100 0000
Q ss_pred CCCCccCCCCHHHHHHHHHHHh--hcceEEEEEccccccc--ccccccCCCCCCCCCCCcEEEE--EcCchh--hhhc-c
Q 002538 235 LFDDSWKNKNLDERALEIFKIL--REKKFVLLLDDIWERV--NLNKVGVPLPSPQSTTASKVVF--TTRFIN--VCGS-M 305 (911)
Q Consensus 235 ~~~~~~~~~~~~~~~~~l~~~L--~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~gs~Iiv--TtR~~~--v~~~-~ 305 (911)
+..+........+ .+++.+||||||+... .++.+...+ ..|+.++| ||.+.. +... .
T Consensus 92 ---------dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~l-----E~g~IiLI~aTTenp~~~l~~aL~ 157 (725)
T PRK13341 92 ---------DLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWV-----ENGTITLIGATTENPYFEVNKALV 157 (725)
T ss_pred ---------HHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHh-----cCceEEEEEecCCChHhhhhhHhh
Confidence 1111122222222 2467899999997542 333333222 23555555 344432 2111 1
Q ss_pred CCcceEEccCCCHHHHHHHHHHHhCCcc----cCCCccHHHHHHHHHHHhCCcch
Q 002538 306 EAHRNFKVECLTEKHAWELFQMKVGEET----LKSHPHVFELAQVVAKECGGLPL 356 (911)
Q Consensus 306 ~~~~~~~l~~L~~~es~~Lf~~~a~~~~----~~~~~~~~~~~~~i~~~c~GlPL 356 (911)
+....+.+++|+.++...++.+.+.... .....--++....|++.+.|.--
T Consensus 158 SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R 212 (725)
T PRK13341 158 SRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDAR 212 (725)
T ss_pred ccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHH
Confidence 2245789999999999999988664110 00111224566778888887643
No 83
>PLN03150 hypothetical protein; Provisional
Probab=98.16 E-value=4.9e-06 Score=98.13 Aligned_cols=109 Identities=27% Similarity=0.420 Sum_probs=92.6
Q ss_pred cceEEEeecCCccc-CCC-CCCCCCccEEEcccCcccccChhhhccCCCCcEEEccCCCCc-ccCccccCcCCCCEEecc
Q 002538 518 KVKRLLLMKNHIKH-LPD-IPTCPHLLTLFLSHNQLRWISEDFFQFMPSLKVLNLSFTKRH-KFPSGISKLASLQLIDLS 594 (911)
Q Consensus 518 ~l~~L~l~~~~~~~-l~~-~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~-~lp~~i~~l~~L~~L~L~ 594 (911)
.++.|++.+|.+.. +|. +..+++|+.|+|++|.+.+..+..+..+++|++|+|++|++. .+|..+++|++|++|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 47889999998864 343 788999999999999998666666899999999999999987 679999999999999999
Q ss_pred CCCcCC-cchhhhcc-CcCcEEecCCCccccccC
Q 002538 595 YTSIRG-LPEELKAL-INLKCLNLDQTKFLVTIP 626 (911)
Q Consensus 595 ~~~i~~-lp~~l~~L-~~L~~L~L~~~~~l~~lp 626 (911)
+|.+.. +|..+..+ .++..+++.+|..+...|
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCC
Confidence 999886 99988764 578899999887655544
No 84
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.16 E-value=3.8e-05 Score=86.48 Aligned_cols=185 Identities=17% Similarity=0.156 Sum_probs=104.4
Q ss_pred cccchHHHHHHHHHHhccCCce-EEEEEcCCCChHHHHHHHHHhhhccCCC-CC-----------------ceEEEEEeC
Q 002538 157 IVKGLESTLEDVWRCLVEESAG-IIGLYGMGGVGKTTLLTRINNKFLESPS-DF-----------------DCVIWVVVS 217 (911)
Q Consensus 157 ~~~Gr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~-~f-----------------~~~~wv~~s 217 (911)
.++|.+..+..+.+.+..++.+ .+.++|++|+||||+|+.+++....... .+ ..++.+..+
T Consensus 15 divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~el~aa 94 (472)
T PRK14962 15 EVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIELDAA 94 (472)
T ss_pred HccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEEEeCc
Confidence 4679998888888888777664 5789999999999999999887521100 00 011222221
Q ss_pred CccChHHHHHHHHHHcCCCCCccCCCCHHHHHHHHHHHhhcceEEEEEcccccc--cccccccCCCCCCCCCCCcEEEEE
Q 002538 218 KDLQIEKNQEIIGKKIGLFDDSWKNKNLDERALEIFKILREKKFVLLLDDIWER--VNLNKVGVPLPSPQSTTASKVVFT 295 (911)
Q Consensus 218 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~gs~IivT 295 (911)
...+...+ +.+.+.... .-..+++-++|+|++... ...+.+...+. .......+|++
T Consensus 95 ~~~gid~i-R~i~~~~~~------------------~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE--~p~~~vv~Ila 153 (472)
T PRK14962 95 SNRGIDEI-RKIRDAVGY------------------RPMEGKYKVYIIDEVHMLTKEAFNALLKTLE--EPPSHVVFVLA 153 (472)
T ss_pred ccCCHHHH-HHHHHHHhh------------------ChhcCCeEEEEEEChHHhHHHHHHHHHHHHH--hCCCcEEEEEE
Confidence 11111111 111111100 012346679999999754 22333333332 22223444444
Q ss_pred cCc-hhhhhcc-CCcceEEccCCCHHHHHHHHHHHhCCcccCCCccHHHHHHHHHHHhCC-cchHHHHHHhhh
Q 002538 296 TRF-INVCGSM-EAHRNFKVECLTEKHAWELFQMKVGEETLKSHPHVFELAQVVAKECGG-LPLALITIGRAM 365 (911)
Q Consensus 296 tR~-~~v~~~~-~~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~G-lPLai~~~g~~l 365 (911)
|.+ ..+...+ .....+++.+++.++....+.+.+...... --.+....|++.++| ++.|+..+-.+.
T Consensus 154 ttn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~---i~~eal~~Ia~~s~GdlR~aln~Le~l~ 223 (472)
T PRK14962 154 TTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIE---IDREALSFIAKRASGGLRDALTMLEQVW 223 (472)
T ss_pred eCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 433 3343222 234678999999999888888876432211 124566778887765 567777766543
No 85
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.15 E-value=1.2e-07 Score=104.99 Aligned_cols=140 Identities=25% Similarity=0.291 Sum_probs=76.5
Q ss_pred cCCCcccCCCCCCcccceEEEeecCCcccCCCCC---------------------------------CCCCccEEEcccC
Q 002538 503 AGTGLAVAPGVEGWEKVKRLLLMKNHIKHLPDIP---------------------------------TCPHLLTLFLSHN 549 (911)
Q Consensus 503 ~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~---------------------------------~~~~L~~L~l~~~ 549 (911)
.+.+.+.+-++..|+.+|+|-+.++++....++. ..-.|.+.+.++|
T Consensus 95 pa~~pt~pi~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN 174 (1096)
T KOG1859|consen 95 PARDPTEPISIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYN 174 (1096)
T ss_pred CCCCCCCCceeccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchh
Confidence 3444455666778889999999888765322210 1113333344444
Q ss_pred cccccChhhhccCCCCcEEEccCCCCcccCccccCcCCCCEEeccCCCcCCcchhhhccCcCcEEecCCCccccccChhh
Q 002538 550 QLRWISEDFFQFMPSLKVLNLSFTKRHKFPSGISKLASLQLIDLSYTSIRGLPEELKALINLKCLNLDQTKFLVTIPRHL 629 (911)
Q Consensus 550 ~l~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~l~~L~~L~~L~L~~~~~l~~lp~~~ 629 (911)
.+..... .+.-++.|+.|||++|++.+.- .+..|++|++|||++|.++.+|..-..-.+|+.|++++|. ++.+-.
T Consensus 175 ~L~~mD~-SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~-l~tL~g-- 249 (1096)
T KOG1859|consen 175 RLVLMDE-SLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNA-LTTLRG-- 249 (1096)
T ss_pred hHHhHHH-HHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhhheeeeecccH-HHhhhh--
Confidence 4432222 2444556666666666665554 5556666666666666666655432222236666666664 454443
Q ss_pred hccCccCcEEEecCCCCC
Q 002538 630 ISSFSMLHVLRMFGSGSS 647 (911)
Q Consensus 630 i~~l~~L~~L~l~~~~~~ 647 (911)
+.+|.+|+.|+++.|-+.
T Consensus 250 ie~LksL~~LDlsyNll~ 267 (1096)
T KOG1859|consen 250 IENLKSLYGLDLSYNLLS 267 (1096)
T ss_pred HHhhhhhhccchhHhhhh
Confidence 556666666666655443
No 86
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.12 E-value=6e-05 Score=82.81 Aligned_cols=171 Identities=12% Similarity=0.081 Sum_probs=100.5
Q ss_pred cccchHHHHHHHHHHhccCC----------ceEEEEEcCCCChHHHHHHHHHhhhccCC------------------CCC
Q 002538 157 IVKGLESTLEDVWRCLVEES----------AGIIGLYGMGGVGKTTLLTRINNKFLESP------------------SDF 208 (911)
Q Consensus 157 ~~~Gr~~~~~~l~~~L~~~~----------~~vi~I~G~gGiGKTtLa~~v~~~~~~~~------------------~~f 208 (911)
.|+|.+..++.+.+.+..+. ..-+-++|+.|+||||+|+.+++...-.. .|.
T Consensus 6 ~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~hp 85 (394)
T PRK07940 6 DLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTHP 85 (394)
T ss_pred hccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCC
Confidence 46799999999999987653 34688999999999999999987651100 011
Q ss_pred ceEEEEEeCCccChHHHHHHHHHHcCCCCCccCCCCHHHHHHHHHHHh-----hcceEEEEEccccccc--ccccccCCC
Q 002538 209 DCVIWVVVSKDLQIEKNQEIIGKKIGLFDDSWKNKNLDERALEIFKIL-----REKKFVLLLDDIWERV--NLNKVGVPL 281 (911)
Q Consensus 209 ~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L-----~~k~~LlVlDdv~~~~--~~~~~~~~l 281 (911)
|. .++.... .....+++. .+.+.+ .+++-++|+|+++... ....+...+
T Consensus 86 D~-~~i~~~~----------------------~~i~i~~iR-~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~L 141 (394)
T PRK07940 86 DV-RVVAPEG----------------------LSIGVDEVR-ELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAV 141 (394)
T ss_pred CE-EEecccc----------------------ccCCHHHHH-HHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHh
Confidence 11 1111000 011122221 222222 2455588889997642 222232223
Q ss_pred CCCCCCCCcEEEEEcCch-hhhhc-cCCcceEEccCCCHHHHHHHHHHHhCCcccCCCccHHHHHHHHHHHhCCcchHHH
Q 002538 282 PSPQSTTASKVVFTTRFI-NVCGS-MEAHRNFKVECLTEKHAWELFQMKVGEETLKSHPHVFELAQVVAKECGGLPLALI 359 (911)
Q Consensus 282 ~~~~~~~gs~IivTtR~~-~v~~~-~~~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~GlPLai~ 359 (911)
. ....+..+|++|.+. .+... .+....+.+.+++.++..+.+.+..+.. .+.+..++..++|.|....
T Consensus 142 E--ep~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~~~--------~~~a~~la~~s~G~~~~A~ 211 (394)
T PRK07940 142 E--EPPPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDGVD--------PETARRAARASQGHIGRAR 211 (394)
T ss_pred h--cCCCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcCCC--------HHHHHHHHHHcCCCHHHHH
Confidence 2 223355556555543 44322 2335688999999999998887543211 3557889999999997554
Q ss_pred HH
Q 002538 360 TI 361 (911)
Q Consensus 360 ~~ 361 (911)
.+
T Consensus 212 ~l 213 (394)
T PRK07940 212 RL 213 (394)
T ss_pred HH
Confidence 43
No 87
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.12 E-value=5.4e-05 Score=83.80 Aligned_cols=197 Identities=15% Similarity=0.082 Sum_probs=108.7
Q ss_pred cccchHHHHHHHHHHhccCCce-EEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCccChHHHHHHHHHHcCC
Q 002538 157 IVKGLESTLEDVWRCLVEESAG-IIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDLQIEKNQEIIGKKIGL 235 (911)
Q Consensus 157 ~~~Gr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 235 (911)
.++|.+..+..+..++..++.. .+.++|+.|+||||+|+.+++... ....... ..+........+...+...+..
T Consensus 19 dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Ln--ce~~~~~--~pCg~C~sC~~i~~g~~~dviE 94 (484)
T PRK14956 19 DVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLN--CENPIGN--EPCNECTSCLEITKGISSDVLE 94 (484)
T ss_pred HHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcC--cccccCc--cccCCCcHHHHHHccCCcccee
Confidence 4679999999999999887765 578999999999999999998762 1111000 0011111111111111000000
Q ss_pred CCCccCCCCHH---HHHHHHHHH-hhcceEEEEEcccccc--cccccccCCCCCCCCCCCcEEE-EEcCchhhhhc-cCC
Q 002538 236 FDDSWKNKNLD---ERALEIFKI-LREKKFVLLLDDIWER--VNLNKVGVPLPSPQSTTASKVV-FTTRFINVCGS-MEA 307 (911)
Q Consensus 236 ~~~~~~~~~~~---~~~~~l~~~-L~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~gs~Ii-vTtR~~~v~~~-~~~ 307 (911)
- +.......+ ++...+... ..++.-++|+|++... ..+..+...+. .......+| .||....+... .+.
T Consensus 95 I-daas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLE--EPp~~viFILaTte~~kI~~TI~SR 171 (484)
T PRK14956 95 I-DAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLE--EPPAHIVFILATTEFHKIPETILSR 171 (484)
T ss_pred e-chhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhh--cCCCceEEEeecCChhhccHHHHhh
Confidence 0 000011122 222222211 2356669999999764 23444444333 222344444 45554444322 233
Q ss_pred cceEEccCCCHHHHHHHHHHHhCCcccCCCccHHHHHHHHHHHhCCcch-HHHHHHh
Q 002538 308 HRNFKVECLTEKHAWELFQMKVGEETLKSHPHVFELAQVVAKECGGLPL-ALITIGR 363 (911)
Q Consensus 308 ~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~GlPL-ai~~~g~ 363 (911)
...|.+.+++.++..+.+.+.+...+. .--.+....|++.++|.+- |+..+-.
T Consensus 172 Cq~~~f~~ls~~~i~~~L~~i~~~Egi---~~e~eAL~~Ia~~S~Gd~RdAL~lLeq 225 (484)
T PRK14956 172 CQDFIFKKVPLSVLQDYSEKLCKIENV---QYDQEGLFWIAKKGDGSVRDMLSFMEQ 225 (484)
T ss_pred hheeeecCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCChHHHHHHHHHH
Confidence 467999999999998888877644321 1124677889999999885 5444433
No 88
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.12 E-value=5.9e-05 Score=85.25 Aligned_cols=196 Identities=16% Similarity=0.164 Sum_probs=108.9
Q ss_pred cccchHHHHHHHHHHhccCCc-eEEEEEcCCCChHHHHHHHHHhhhccCCCCCce-EEEEEeCCccChHHHHHHHHHHcC
Q 002538 157 IVKGLESTLEDVWRCLVEESA-GIIGLYGMGGVGKTTLLTRINNKFLESPSDFDC-VIWVVVSKDLQIEKNQEIIGKKIG 234 (911)
Q Consensus 157 ~~~Gr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~-~~wv~~s~~~~~~~~~~~i~~~l~ 234 (911)
.++|.+..+..+.+.+..++. ..+.++|..|+||||+|+.+++... -...... --+..+....+ -..+.....
T Consensus 22 dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Ln-c~~~~~~~~~~~~C~~C~~----C~~i~~~~h 96 (507)
T PRK06645 22 ELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVN-CSALITENTTIKTCEQCTN----CISFNNHNH 96 (507)
T ss_pred HhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhc-CccccccCcCcCCCCCChH----HHHHhcCCC
Confidence 356999999998888777654 5788999999999999999998762 1111100 00000000000 000100000
Q ss_pred CCC---CccCCCCHHHHHHHHHH----HhhcceEEEEEcccccc--cccccccCCCCCCCCCCCcEEEE-EcCchhhhhc
Q 002538 235 LFD---DSWKNKNLDERALEIFK----ILREKKFVLLLDDIWER--VNLNKVGVPLPSPQSTTASKVVF-TTRFINVCGS 304 (911)
Q Consensus 235 ~~~---~~~~~~~~~~~~~~l~~----~L~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~gs~Iiv-TtR~~~v~~~ 304 (911)
... +.......+++...+.. -+.+++-++|+|+++.. ..+..+...+. .....+.+|+ ||+...+...
T Consensus 97 ~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LE--epp~~~vfI~aTte~~kI~~t 174 (507)
T PRK06645 97 PDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLE--EPPPHIIFIFATTEVQKIPAT 174 (507)
T ss_pred CcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHh--hcCCCEEEEEEeCChHHhhHH
Confidence 000 00011122222222211 12456779999999864 33555544443 3334555554 5555555433
Q ss_pred c-CCcceEEccCCCHHHHHHHHHHHhCCcccCCCccHHHHHHHHHHHhCCcch-HHHHHH
Q 002538 305 M-EAHRNFKVECLTEKHAWELFQMKVGEETLKSHPHVFELAQVVAKECGGLPL-ALITIG 362 (911)
Q Consensus 305 ~-~~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~GlPL-ai~~~g 362 (911)
. +....+++.+++.++....+.+.+...+.. --.+....|++.++|.+- |+..+-
T Consensus 175 I~SRc~~~ef~~ls~~el~~~L~~i~~~egi~---ie~eAL~~Ia~~s~GslR~al~~Ld 231 (507)
T PRK06645 175 IISRCQRYDLRRLSFEEIFKLLEYITKQENLK---TDIEALRIIAYKSEGSARDAVSILD 231 (507)
T ss_pred HHhcceEEEccCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 2 234678999999999999998887543311 123566779999999775 444443
No 89
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.11 E-value=2.9e-07 Score=103.61 Aligned_cols=125 Identities=30% Similarity=0.387 Sum_probs=74.7
Q ss_pred cceEEEeecCCcccC-CCCCCCCCccEEEcccCcccccChhhhccCCCCcEEEccCCCCcccCccccCcCCCCEEeccCC
Q 002538 518 KVKRLLLMKNHIKHL-PDIPTCPHLLTLFLSHNQLRWISEDFFQFMPSLKVLNLSFTKRHKFPSGISKLASLQLIDLSYT 596 (911)
Q Consensus 518 ~l~~L~l~~~~~~~l-~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~ 596 (911)
.+..+++..|.+..+ ..+..+++|..|++.+|.+..+... +..+++|++|++++|.|+.+. .+..+..|+.|++++|
T Consensus 73 ~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~-l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N 150 (414)
T KOG0531|consen 73 SLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENL-LSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGN 150 (414)
T ss_pred hHHhhccchhhhhhhhcccccccceeeeeccccchhhcccc-hhhhhcchheecccccccccc-chhhccchhhheeccC
Confidence 344444555555542 2356666667777777666555442 455667777777777766664 4555666777777777
Q ss_pred CcCCcchhhhccCcCcEEecCCCccccccCh-hhhccCccCcEEEecCCCCC
Q 002538 597 SIRGLPEELKALINLKCLNLDQTKFLVTIPR-HLISSFSMLHVLRMFGSGSS 647 (911)
Q Consensus 597 ~i~~lp~~l~~L~~L~~L~L~~~~~l~~lp~-~~i~~l~~L~~L~l~~~~~~ 647 (911)
.|..++ .+..+++|+.+++++|. +..++. . ...+.+|+.+.+.+|.+.
T Consensus 151 ~i~~~~-~~~~l~~L~~l~l~~n~-i~~ie~~~-~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 151 LISDIS-GLESLKSLKLLDLSYNR-IVDIENDE-LSELISLEELDLGGNSIR 199 (414)
T ss_pred cchhcc-CCccchhhhcccCCcch-hhhhhhhh-hhhccchHHHhccCCchh
Confidence 666653 44456677777777765 344443 1 256666666666666543
No 90
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.11 E-value=7.4e-05 Score=74.19 Aligned_cols=161 Identities=15% Similarity=0.127 Sum_probs=90.8
Q ss_pred HHHHHhccCCc-eEEEEEcCCCChHHHHHHHHHhhhccCC-------------------CCCceEEEEEeCCccChHHHH
Q 002538 167 DVWRCLVEESA-GIIGLYGMGGVGKTTLLTRINNKFLESP-------------------SDFDCVIWVVVSKDLQIEKNQ 226 (911)
Q Consensus 167 ~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~~f~~~~wv~~s~~~~~~~~~ 226 (911)
.+.+.+..++. ..+.++|..|+||||+|+.+.+...... .+.|.............+.+
T Consensus 3 ~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~~~~~~~i- 81 (188)
T TIGR00678 3 QLKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQSIKVDQV- 81 (188)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccCcCCHHHH-
Confidence 45555656665 5788999999999999999988862110 11121111111111111111
Q ss_pred HHHHHHcCCCCCccCCCCHHHHHHHHHHHhhcceEEEEEccccccc--ccccccCCCCCCCCCCCcEEEEEcCch-hhhh
Q 002538 227 EIIGKKIGLFDDSWKNKNLDERALEIFKILREKKFVLLLDDIWERV--NLNKVGVPLPSPQSTTASKVVFTTRFI-NVCG 303 (911)
Q Consensus 227 ~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~gs~IivTtR~~-~v~~ 303 (911)
+++.+.+... -..+.+-++|+||+.... .++.+...+. .....+.+|++|++. .+..
T Consensus 82 ~~i~~~~~~~------------------~~~~~~kviiide~~~l~~~~~~~Ll~~le--~~~~~~~~il~~~~~~~l~~ 141 (188)
T TIGR00678 82 RELVEFLSRT------------------PQESGRRVVIIEDAERMNEAAANALLKTLE--EPPPNTLFILITPSPEKLLP 141 (188)
T ss_pred HHHHHHHccC------------------cccCCeEEEEEechhhhCHHHHHHHHHHhc--CCCCCeEEEEEECChHhChH
Confidence 1111111100 012456689999997642 2344433333 223456666666544 2222
Q ss_pred cc-CCcceEEccCCCHHHHHHHHHHHhCCcccCCCccHHHHHHHHHHHhCCcchH
Q 002538 304 SM-EAHRNFKVECLTEKHAWELFQMKVGEETLKSHPHVFELAQVVAKECGGLPLA 357 (911)
Q Consensus 304 ~~-~~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~GlPLa 357 (911)
.. +....+++.+++.++..+.+.+. + . -.+.+..|++.++|.|..
T Consensus 142 ~i~sr~~~~~~~~~~~~~~~~~l~~~-g-----i---~~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 142 TIRSRCQVLPFPPLSEEALLQWLIRQ-G-----I---SEEAAELLLALAGGSPGA 187 (188)
T ss_pred HHHhhcEEeeCCCCCHHHHHHHHHHc-C-----C---CHHHHHHHHHHcCCCccc
Confidence 11 23458899999999998888776 1 1 136788999999998853
No 91
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.11 E-value=2.6e-05 Score=86.16 Aligned_cols=172 Identities=19% Similarity=0.226 Sum_probs=98.2
Q ss_pred ccccchHHHHHHHHHHhcc-------------CCceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCccCh
Q 002538 156 AIVKGLESTLEDVWRCLVE-------------ESAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDLQI 222 (911)
Q Consensus 156 ~~~~Gr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~ 222 (911)
..+.|+++.++++.+.+.. ...+-+.++|++|+|||++|+++++.. ...| +.+..
T Consensus 122 ~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l---~~~~-----~~v~~---- 189 (364)
T TIGR01242 122 EDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET---NATF-----IRVVG---- 189 (364)
T ss_pred HHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhC---CCCE-----Eecch----
Confidence 3467999999999887642 124568899999999999999999986 3333 22211
Q ss_pred HHHHHHHHHHcCCCCCccCCCCHHHHHHHHHHHh-hcceEEEEEccccccc----------------ccccccCCCCCCC
Q 002538 223 EKNQEIIGKKIGLFDDSWKNKNLDERALEIFKIL-REKKFVLLLDDIWERV----------------NLNKVGVPLPSPQ 285 (911)
Q Consensus 223 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L-~~k~~LlVlDdv~~~~----------------~~~~~~~~l~~~~ 285 (911)
..+.... .+ ........+.+.. ...+.+|+|||++... .+..+...+....
T Consensus 190 ~~l~~~~---~g---------~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~ 257 (364)
T TIGR01242 190 SELVRKY---IG---------EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFD 257 (364)
T ss_pred HHHHHHh---hh---------HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCC
Confidence 1111110 00 1111222222222 2456899999997531 0111111111001
Q ss_pred CCCCcEEEEEcCchhhh-----hccCCcceEEccCCCHHHHHHHHHHHhCCcccCCCccHHHHHHHHHHHhCCcc
Q 002538 286 STTASKVVFTTRFINVC-----GSMEAHRNFKVECLTEKHAWELFQMKVGEETLKSHPHVFELAQVVAKECGGLP 355 (911)
Q Consensus 286 ~~~gs~IivTtR~~~v~-----~~~~~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~GlP 355 (911)
...+.+||.||...... ........+++...+.++..++|+.++.......... ...+++.+.|..
T Consensus 258 ~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~----~~~la~~t~g~s 328 (364)
T TIGR01242 258 PRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVD----LEAIAKMTEGAS 328 (364)
T ss_pred CCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCC----HHHHHHHcCCCC
Confidence 23466788888754432 1112245789999999999999998875543222222 355667777653
No 92
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.09 E-value=1.2e-06 Score=87.38 Aligned_cols=82 Identities=10% Similarity=0.125 Sum_probs=45.6
Q ss_pred cccCcceEEEeeeccCCCceeecccccccccceEeecccccccee-EecccCccccccccccCCccCEEEEecCCCCCCC
Q 002538 696 KLRSCTQAIFLQCFKDSKSIYAAALADLKHLKKLCISQCEELEEL-KIDCTGEVKRMCQPYIFRSLNKVQIYSCPVLKDL 774 (911)
Q Consensus 696 ~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l-~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l 774 (911)
...+++..+.+..|+-.+.........+|.+-.|+++..+ +.++ .++.+ ..|+.|..|.+.+.|.+..+
T Consensus 196 r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~-idswasvD~L---------n~f~~l~dlRv~~~Pl~d~l 265 (418)
T KOG2982|consen 196 RIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANN-IDSWASVDAL---------NGFPQLVDLRVSENPLSDPL 265 (418)
T ss_pred hhcccchheeeecCcccchhhcccCCCCCcchhhhhcccc-cccHHHHHHH---------cCCchhheeeccCCcccccc
Confidence 3344555555554433222222345555666666665442 2211 12222 34888888888888776655
Q ss_pred cc-------cccCCCcceEe
Q 002538 775 TF-------LVFAPNLKSID 787 (911)
Q Consensus 775 ~~-------l~~l~~L~~L~ 787 (911)
.. ++.|++++.|+
T Consensus 266 ~~~err~llIaRL~~v~vLN 285 (418)
T KOG2982|consen 266 RGGERRFLLIARLTKVQVLN 285 (418)
T ss_pred cCCcceEEEEeeccceEEec
Confidence 32 46788888875
No 93
>PRK05642 DNA replication initiation factor; Validated
Probab=98.09 E-value=2.1e-05 Score=80.63 Aligned_cols=170 Identities=15% Similarity=0.196 Sum_probs=96.3
Q ss_pred cccccchHHHHHHHHHHhccC----CceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCccChHHHHHHHH
Q 002538 155 EAIVKGLESTLEDVWRCLVEE----SAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDLQIEKNQEIIG 230 (911)
Q Consensus 155 ~~~~~Gr~~~~~~l~~~L~~~----~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 230 (911)
+..++|.........+.+..+ ....+.|+|..|+|||.|++++++.. . ..-..++|++... +...
T Consensus 19 dnF~~~~~~~a~~~~~~~~~~~~~~~~~~l~l~G~~G~GKTHLl~a~~~~~-~--~~~~~v~y~~~~~------~~~~-- 87 (234)
T PRK05642 19 ANYYPGANAAALGYVERLCEADAGWTESLIYLWGKDGVGRSHLLQAACLRF-E--QRGEPAVYLPLAE------LLDR-- 87 (234)
T ss_pred cccCcCChHHHHHHHHHHhhccccCCCCeEEEECCCCCCHHHHHHHHHHHH-H--hCCCcEEEeeHHH------HHhh--
Confidence 344556554444333332211 23678999999999999999999876 2 1224567775432 1110
Q ss_pred HHcCCCCCccCCCCHHHHHHHHHHHhhcceEEEEEcccccc---ccccc-ccCCCCCCCCCCCcEEEEEcCchhhh----
Q 002538 231 KKIGLFDDSWKNKNLDERALEIFKILREKKFVLLLDDIWER---VNLNK-VGVPLPSPQSTTASKVVFTTRFINVC---- 302 (911)
Q Consensus 231 ~~l~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~---~~~~~-~~~~l~~~~~~~gs~IivTtR~~~v~---- 302 (911)
...+.+.+++-. +||+||+... ..|+. +...+.. ....|.+||+|++...-.
T Consensus 88 ------------------~~~~~~~~~~~d-~LiiDDi~~~~~~~~~~~~Lf~l~n~-~~~~g~~ilits~~~p~~l~~~ 147 (234)
T PRK05642 88 ------------------GPELLDNLEQYE-LVCLDDLDVIAGKADWEEALFHLFNR-LRDSGRRLLLAASKSPRELPIK 147 (234)
T ss_pred ------------------hHHHHHhhhhCC-EEEEechhhhcCChHHHHHHHHHHHH-HHhcCCEEEEeCCCCHHHcCcc
Confidence 012222232222 6889999643 23432 2222210 123467789988754331
Q ss_pred -----hccCCcceEEccCCCHHHHHHHHHHHhCCcccCCCccHHHHHHHHHHHhCCcchHH
Q 002538 303 -----GSMEAHRNFKVECLTEKHAWELFQMKVGEETLKSHPHVFELAQVVAKECGGLPLAL 358 (911)
Q Consensus 303 -----~~~~~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~GlPLai 358 (911)
..+....++++++++.++-.+++++++...... --+++..-|++.+.|..-++
T Consensus 148 ~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka~~~~~~---l~~ev~~~L~~~~~~d~r~l 205 (234)
T PRK05642 148 LPDLKSRLTLALVFQMRGLSDEDKLRALQLRASRRGLH---LTDEVGHFILTRGTRSMSAL 205 (234)
T ss_pred CccHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHhcCCCHHHH
Confidence 122334678999999999999998766432211 12467777777777765444
No 94
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.08 E-value=6.7e-06 Score=81.59 Aligned_cols=44 Identities=30% Similarity=0.373 Sum_probs=32.3
Q ss_pred ccchHHHHHHHHHHhc---cCCceEEEEEcCCCChHHHHHHHHHhhh
Q 002538 158 VKGLESTLEDVWRCLV---EESAGIIGLYGMGGVGKTTLLTRINNKF 201 (911)
Q Consensus 158 ~~Gr~~~~~~l~~~L~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 201 (911)
++||+++++++.+.+. ....+.+.|+|.+|+|||+|.+.++...
T Consensus 2 fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~ 48 (185)
T PF13191_consen 2 FVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRL 48 (185)
T ss_dssp -TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 5699999999999993 2467899999999999999999999987
No 95
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.07 E-value=9.6e-06 Score=85.81 Aligned_cols=288 Identities=18% Similarity=0.164 Sum_probs=178.5
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhhccCCCCC-ceEEEEEeCCccChHHHHHHHHHHcCCCCCccCCCCHHHHHHHHHH
Q 002538 176 SAGIIGLYGMGGVGKTTLLTRINNKFLESPSDF-DCVIWVVVSKDLQIEKNQEIIGKKIGLFDDSWKNKNLDERALEIFK 254 (911)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f-~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 254 (911)
..+-+.++|.|||||||++-.+.. . ...| +.+.++....-.+...+.-.....++.+. .+-+.....+..
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~-~---~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~-----~~g~~~~~~~~~ 83 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH-A---ASEYADGVAFVDLAPITDPALVFPTLAGALGLHV-----QPGDSAVDTLVR 83 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh-H---hhhcccceeeeeccccCchhHhHHHHHhhccccc-----ccchHHHHHHHH
Confidence 457899999999999999999988 4 3455 56667766666677777777777777653 222344556777
Q ss_pred HhhcceEEEEEcccccccc-cccccCCCCCCCCCCCcEEEEEcCchhhhhccCCcceEEccCCCHH-HHHHHHHHHhCCc
Q 002538 255 ILREKKFVLLLDDIWERVN-LNKVGVPLPSPQSTTASKVVFTTRFINVCGSMEAHRNFKVECLTEK-HAWELFQMKVGEE 332 (911)
Q Consensus 255 ~L~~k~~LlVlDdv~~~~~-~~~~~~~l~~~~~~~gs~IivTtR~~~v~~~~~~~~~~~l~~L~~~-es~~Lf~~~a~~~ 332 (911)
...++|.++|+||..+..+ -......+. .+...-.|+.|+|..-. .....++.+.+|+.. ++.++|...+...
T Consensus 84 ~~~~rr~llvldncehl~~~~a~~i~all--~~~~~~~~~atsre~~l---~~ge~~~~~~~L~~~d~a~~lf~~ra~~~ 158 (414)
T COG3903 84 RIGDRRALLVLDNCEHLLDACAALIVALL--GACPRLAILATSREAIL---VAGEVHRRVPSLSLFDEAIELFVCRAVLV 158 (414)
T ss_pred HHhhhhHHHHhcCcHHHHHHHHHHHHHHH--ccchhhhhHHHhHhhhc---ccccccccCCccccCCchhHHHHHHHHHh
Confidence 8889999999999876422 111111111 23334568888884333 234556778888864 7889987776422
Q ss_pred c--cCCCccHHHHHHHHHHHhCCcchHHHHHHhhhccCCCHHHHHHHHHHHHhccccc-------CCCchhhcccccccc
Q 002538 333 T--LKSHPHVFELAQVVAKECGGLPLALITIGRAMAYKKTREEWKYAIEVLRRSTFEL-------AGLEKEVYPLLKFSY 403 (911)
Q Consensus 333 ~--~~~~~~~~~~~~~i~~~c~GlPLai~~~g~~l~~~~~~~~w~~~~~~l~~~~~~~-------~~~~~~i~~~l~~sy 403 (911)
. ..-...-.....+|.+...|.|++|...++..+.- ...+ +.+.++...... .-.+......+.+||
T Consensus 159 ~~~f~l~~~~~a~v~~icr~ldg~~laielaaarv~sl-~~~~---i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~ 234 (414)
T COG3903 159 ALSFWLTDDNAAAVAEICRRLDGIPLAIELAAARVRSL-SPDE---IAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSY 234 (414)
T ss_pred ccceeecCCchHHHHHHHHHhhcchHHHHHHHHHHHhc-CHHH---HHHHHhhHHHHHhcccccchhHHHhccchhhhhh
Confidence 1 11112235778899999999999999988776652 2211 112222211111 111235778899999
Q ss_pred CCCChhhhhHHHHHhhcCCCCcccChHHHHHHHHhcCCccCCcccccchhHhHHHHHHHHhhccccc---CCCceehhHH
Q 002538 404 DCLPNDIIRSCFLYCCLYPEDWNTFKRNLIDCWIGEGFLEENDRFGAHNQGYYIVGTLVHACLLEEV---EDDKVKMHDV 480 (911)
Q Consensus 404 ~~L~~~~~k~cfl~~~~fp~~~~i~~~~li~~w~aeg~i~~~~~~~~~~~~~~~l~~L~~~~ll~~~---~~~~~~mHdl 480 (911)
.-|.. ..+.-|.-++.|...+... ...|.+.|-.. ..+.......+..|++++++.-. ....++.-+-
T Consensus 235 ~lLtg-we~~~~~rLa~~~g~f~~~----l~~~~a~g~~~----~~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT 305 (414)
T COG3903 235 ALLTG-WERALFGRLAVFVGGFDLG----LALAVAAGADV----DVPRYLVLLALTLLVDKSLVVALDLLGRARYRLLET 305 (414)
T ss_pred Hhhhh-HHHHHhcchhhhhhhhccc----HHHHHhcCCcc----ccchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHH
Confidence 99987 6788888889988776544 33455544221 11223333446678888886543 3344555555
Q ss_pred HHHHHHHHHH
Q 002538 481 IRDMALWIAS 490 (911)
Q Consensus 481 v~d~a~~i~~ 490 (911)
+|.|+...-.
T Consensus 306 ~r~YalaeL~ 315 (414)
T COG3903 306 GRRYALAELH 315 (414)
T ss_pred HHHHHHHHHH
Confidence 5665554443
No 96
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.05 E-value=3.7e-05 Score=88.36 Aligned_cols=199 Identities=16% Similarity=0.098 Sum_probs=105.9
Q ss_pred ccccchHHHHHHHHHHhccCCce-EEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCccChHHHHHH-HHHHc
Q 002538 156 AIVKGLESTLEDVWRCLVEESAG-IIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDLQIEKNQEI-IGKKI 233 (911)
Q Consensus 156 ~~~~Gr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~-i~~~l 233 (911)
..++|.+..++.|.+++..++.. .+.++|..|+||||+|+.+.+... -..... +..+.....-..+... ...-+
T Consensus 16 ddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~Ln-C~~~~~---~~pCg~C~sCr~i~~g~~~Dvl 91 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLN-CENAQH---GEPCGVCQSCTQIDAGRYVDLL 91 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhc-ccCCCC---CCCCcccHHHHHHhccCccceE
Confidence 34679999999999999877654 678999999999999999988751 111100 0000000000000000 00000
Q ss_pred CCCCCccCCCCHHHHHHHHHH----HhhcceEEEEEcccccccc--cccccCCCCCCCCCCCcEEEEEcCchh-hhhc-c
Q 002538 234 GLFDDSWKNKNLDERALEIFK----ILREKKFVLLLDDIWERVN--LNKVGVPLPSPQSTTASKVVFTTRFIN-VCGS-M 305 (911)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~l~~----~L~~k~~LlVlDdv~~~~~--~~~~~~~l~~~~~~~gs~IivTtR~~~-v~~~-~ 305 (911)
.+.. ......+.+...+.. -..+++-++|+|++..... ...+...+. .....+++|++|.+.. +... .
T Consensus 92 Eida--As~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLE--EPp~~v~fILaTtd~~kL~~TIr 167 (709)
T PRK08691 92 EIDA--ASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLE--EPPEHVKFILATTDPHKVPVTVL 167 (709)
T ss_pred EEec--cccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHH--hCCCCcEEEEEeCCccccchHHH
Confidence 0000 011112222111111 1235667999999975432 222322232 2223456666664433 2211 1
Q ss_pred CCcceEEccCCCHHHHHHHHHHHhCCcccCCCccHHHHHHHHHHHhCCcch-HHHHHHhhh
Q 002538 306 EAHRNFKVECLTEKHAWELFQMKVGEETLKSHPHVFELAQVVAKECGGLPL-ALITIGRAM 365 (911)
Q Consensus 306 ~~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~GlPL-ai~~~g~~l 365 (911)
+....+++.+++.++....+.+.+...+.. --.+....|++.++|.+. |+..+-.++
T Consensus 168 SRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~---id~eAL~~Ia~~A~GslRdAlnLLDqai 225 (709)
T PRK08691 168 SRCLQFVLRNMTAQQVADHLAHVLDSEKIA---YEPPALQLLGRAAAGSMRDALSLLDQAI 225 (709)
T ss_pred HHHhhhhcCCCCHHHHHHHHHHHHHHcCCC---cCHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 233567889999999998888776543311 124567889999999875 444443433
No 97
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.04 E-value=0.00011 Score=81.24 Aligned_cols=179 Identities=14% Similarity=0.142 Sum_probs=104.4
Q ss_pred cccchHHHHHHHHHHhccCCce-EEEEEcCCCChHHHHHHHHHhhhccC-C------------------CCCceEEEEEe
Q 002538 157 IVKGLESTLEDVWRCLVEESAG-IIGLYGMGGVGKTTLLTRINNKFLES-P------------------SDFDCVIWVVV 216 (911)
Q Consensus 157 ~~~Gr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~-~------------------~~f~~~~wv~~ 216 (911)
.++|.+..++.+.+++..++.+ .+-++|..|+||||+|+.+....... . .+++. +++..
T Consensus 15 ~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~-~~~~~ 93 (355)
T TIGR02397 15 DVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV-IEIDA 93 (355)
T ss_pred hccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE-EEeec
Confidence 3569999999999999876554 67899999999999999998775210 0 12222 22222
Q ss_pred CCccChHHHHHHHHHHcCCCCCccCCCCHHHHHHHHHHHhhcceEEEEEcccccc--cccccccCCCCCCCCCCCcEEEE
Q 002538 217 SKDLQIEKNQEIIGKKIGLFDDSWKNKNLDERALEIFKILREKKFVLLLDDIWER--VNLNKVGVPLPSPQSTTASKVVF 294 (911)
Q Consensus 217 s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~gs~Iiv 294 (911)
+....... .+.+...+... -..+++-++|+|++... .....+...+. .....+.+|+
T Consensus 94 ~~~~~~~~-~~~l~~~~~~~------------------p~~~~~~vviidea~~l~~~~~~~Ll~~le--~~~~~~~lIl 152 (355)
T TIGR02397 94 ASNNGVDD-IREILDNVKYA------------------PSSGKYKVYIIDEVHMLSKSAFNALLKTLE--EPPEHVVFIL 152 (355)
T ss_pred cccCCHHH-HHHHHHHHhcC------------------cccCCceEEEEeChhhcCHHHHHHHHHHHh--CCccceeEEE
Confidence 11111111 11111111100 01245558899998654 22333333333 2234566666
Q ss_pred EcCchh-hhhc-cCCcceEEccCCCHHHHHHHHHHHhCCcccCCCccHHHHHHHHHHHhCCcchHHHH
Q 002538 295 TTRFIN-VCGS-MEAHRNFKVECLTEKHAWELFQMKVGEETLKSHPHVFELAQVVAKECGGLPLALIT 360 (911)
Q Consensus 295 TtR~~~-v~~~-~~~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~ 360 (911)
+|.+.. +... .+....+++.++++++....+...+....... -.+....+++.++|.|..+..
T Consensus 153 ~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i---~~~a~~~l~~~~~g~~~~a~~ 217 (355)
T TIGR02397 153 ATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKI---EDEALELIARAADGSLRDALS 217 (355)
T ss_pred EeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCChHHHHH
Confidence 665444 2222 22345788999999999888887664332111 146778889999998865543
No 98
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.04 E-value=7.4e-05 Score=85.02 Aligned_cols=184 Identities=17% Similarity=0.172 Sum_probs=107.5
Q ss_pred cccchHHHHHHHHHHhccCCce-EEEEEcCCCChHHHHHHHHHhhhccCCC------------------CCceEEEEEeC
Q 002538 157 IVKGLESTLEDVWRCLVEESAG-IIGLYGMGGVGKTTLLTRINNKFLESPS------------------DFDCVIWVVVS 217 (911)
Q Consensus 157 ~~~Gr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~------------------~f~~~~wv~~s 217 (911)
.++|.+..++.+.+.+..++.. .+.++|+.|+||||+|+.+++....... .|...+++...
T Consensus 17 diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlieidaa 96 (546)
T PRK14957 17 EVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEIDAA 96 (546)
T ss_pred HhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEeecc
Confidence 4669999999999999876554 5779999999999999999886521000 11112222211
Q ss_pred CccChHHHHHHHHHHcCCCCCccCCCCHHHHHHHHHHH-hhcceEEEEEccccccc--ccccccCCCCCCCCCCCcEEE-
Q 002538 218 KDLQIEKNQEIIGKKIGLFDDSWKNKNLDERALEIFKI-LREKKFVLLLDDIWERV--NLNKVGVPLPSPQSTTASKVV- 293 (911)
Q Consensus 218 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~-L~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~gs~Ii- 293 (911)
....+. +..++...+... ..+++-++|+||+.... .+..+...+. .....+.+|
T Consensus 97 s~~gvd--------------------~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LE--epp~~v~fIL 154 (546)
T PRK14957 97 SRTGVE--------------------ETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLE--EPPEYVKFIL 154 (546)
T ss_pred cccCHH--------------------HHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHh--cCCCCceEEE
Confidence 111111 111222222211 24566799999997542 3444433343 223345555
Q ss_pred EEcCchhhhhc-cCCcceEEccCCCHHHHHHHHHHHhCCcccCCCccHHHHHHHHHHHhCCcch-HHHHHHhhh
Q 002538 294 FTTRFINVCGS-MEAHRNFKVECLTEKHAWELFQMKVGEETLKSHPHVFELAQVVAKECGGLPL-ALITIGRAM 365 (911)
Q Consensus 294 vTtR~~~v~~~-~~~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~GlPL-ai~~~g~~l 365 (911)
+||....+... .+....+++.+++.++....+.+.+...+. ..-++....|++.++|.+- |+..+-.+.
T Consensus 155 ~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi---~~e~~Al~~Ia~~s~GdlR~alnlLek~i 225 (546)
T PRK14957 155 ATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENI---NSDEQSLEYIAYHAKGSLRDALSLLDQAI 225 (546)
T ss_pred EECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 45544444322 234578999999999988777775533221 1224566788999999664 555554433
No 99
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.03 E-value=0.00014 Score=79.33 Aligned_cols=197 Identities=13% Similarity=0.034 Sum_probs=108.4
Q ss_pred ccccchHHHHHHHHHHhccCCce-EEEEEcCCCChHHHHHHHHHhhhccCC-CCCce-EEEEEeCCccChHHHHHHHHHH
Q 002538 156 AIVKGLESTLEDVWRCLVEESAG-IIGLYGMGGVGKTTLLTRINNKFLESP-SDFDC-VIWVVVSKDLQIEKNQEIIGKK 232 (911)
Q Consensus 156 ~~~~Gr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~-~~f~~-~~wv~~s~~~~~~~~~~~i~~~ 232 (911)
..++|.++.++.+.+.+..++.+ .+-++|+.|+||+|+|..+++...-.. ..... ..-.........-..-+.|...
T Consensus 19 ~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~~i~~~ 98 (365)
T PRK07471 19 TALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVARRIAAG 98 (365)
T ss_pred hhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHHHHHHcc
Confidence 34779999999999999887766 588999999999999999888762111 00110 0000000000000111111110
Q ss_pred cCC-------C-CCc----cCCCCHHHHHHHHHHHhh-----cceEEEEEccccccc--ccccccCCCCCCCCCCCcEEE
Q 002538 233 IGL-------F-DDS----WKNKNLDERALEIFKILR-----EKKFVLLLDDIWERV--NLNKVGVPLPSPQSTTASKVV 293 (911)
Q Consensus 233 l~~-------~-~~~----~~~~~~~~~~~~l~~~L~-----~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~gs~Ii 293 (911)
-.- . .+. ...-..++ +..+.+.+. +++-++|+||++... ....+...+. ....++.+|
T Consensus 99 ~HPDl~~i~~~~~~~~~~~~~~I~Vdq-iR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LE--epp~~~~~I 175 (365)
T PRK07471 99 AHGGLLTLERSWNEKGKRLRTVITVDE-VRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLE--EPPARSLFL 175 (365)
T ss_pred CCCCeEEEecccccccccccccccHHH-HHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHh--cCCCCeEEE
Confidence 000 0 000 00112333 333444442 466799999997542 2333333332 223355666
Q ss_pred EEcCchhh-hh-ccCCcceEEccCCCHHHHHHHHHHHhCCcccCCCccHHHHHHHHHHHhCCcchHHHHHH
Q 002538 294 FTTRFINV-CG-SMEAHRNFKVECLTEKHAWELFQMKVGEETLKSHPHVFELAQVVAKECGGLPLALITIG 362 (911)
Q Consensus 294 vTtR~~~v-~~-~~~~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~g 362 (911)
++|.+.+- .. ..+....+.+.+++.++..+++.+...... .+....+++.++|.|..+..+.
T Consensus 176 L~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~~~-------~~~~~~l~~~s~Gsp~~Al~ll 239 (365)
T PRK07471 176 LVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPDLP-------DDPRAALAALAEGSVGRALRLA 239 (365)
T ss_pred EEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcccCC-------HHHHHHHHHHcCCCHHHHHHHh
Confidence 66665543 22 223356889999999999999987643211 1222678999999998665443
No 100
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.03 E-value=2.7e-05 Score=80.05 Aligned_cols=171 Identities=10% Similarity=0.060 Sum_probs=94.5
Q ss_pred cccchHHHHHH-HHHHhcc-CCceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCccChHHHHHHHHHHcC
Q 002538 157 IVKGLESTLED-VWRCLVE-ESAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDLQIEKNQEIIGKKIG 234 (911)
Q Consensus 157 ~~~Gr~~~~~~-l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 234 (911)
.+.|.+..... +.++... .....+.|+|..|+|||+||+.+++... .... .+.+++..... ..+
T Consensus 20 f~~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~--~~~~-~~~~i~~~~~~------~~~----- 85 (227)
T PRK08903 20 FVAGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADAS--YGGR-NARYLDAASPL------LAF----- 85 (227)
T ss_pred cccCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHH--hCCC-cEEEEehHHhH------HHH-----
Confidence 34455444433 3333332 3456788999999999999999999762 1222 34445432210 000
Q ss_pred CCCCccCCCCHHHHHHHHHHHhhcceEEEEEcccccccccc--cccCCCCCCCCCCCc-EEEEEcCchhhhh--------
Q 002538 235 LFDDSWKNKNLDERALEIFKILREKKFVLLLDDIWERVNLN--KVGVPLPSPQSTTAS-KVVFTTRFINVCG-------- 303 (911)
Q Consensus 235 ~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~~~~--~~~~~l~~~~~~~gs-~IivTtR~~~v~~-------- 303 (911)
... ...-+||+||+.....+. .+...+.. ....+. .||+|++......
T Consensus 86 -------------------~~~-~~~~~liiDdi~~l~~~~~~~L~~~~~~-~~~~~~~~vl~~~~~~~~~~~l~~~L~s 144 (227)
T PRK08903 86 -------------------DFD-PEAELYAVDDVERLDDAQQIALFNLFNR-VRAHGQGALLVAGPAAPLALPLREDLRT 144 (227)
T ss_pred -------------------hhc-ccCCEEEEeChhhcCchHHHHHHHHHHH-HHHcCCcEEEEeCCCCHHhCCCCHHHHH
Confidence 011 223478999997543211 22222210 012333 4677776543322
Q ss_pred ccCCcceEEccCCCHHHHHHHHHHHhCCcccCCCccHHHHHHHHHHHhCCcchHHHHHHhhh
Q 002538 304 SMEAHRNFKVECLTEKHAWELFQMKVGEETLKSHPHVFELAQVVAKECGGLPLALITIGRAM 365 (911)
Q Consensus 304 ~~~~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~g~~l 365 (911)
.+.....+++.++++++-..++.+.+.... ..--++....+++.+.|.+..+..+-..+
T Consensus 145 r~~~~~~i~l~pl~~~~~~~~l~~~~~~~~---v~l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 145 RLGWGLVYELKPLSDADKIAALKAAAAERG---LQLADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HHhcCeEEEecCCCHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 222246789999999887777766443222 11224677788888899888776665444
No 101
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.00 E-value=2.3e-05 Score=84.11 Aligned_cols=95 Identities=16% Similarity=0.101 Sum_probs=64.9
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCc--cChHHHHHHHHHHcCCCCCccCCCCHHHHH---
Q 002538 175 ESAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKD--LQIEKNQEIIGKKIGLFDDSWKNKNLDERA--- 249 (911)
Q Consensus 175 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~--~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~--- 249 (911)
..-..++|+|.+|+|||||++.+++.. . .++|+..+|+.+++. .++.++++.+...+-...-+........+.
T Consensus 166 g~Gq~~~IvG~~g~GKTtL~~~i~~~I-~-~nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v 243 (415)
T TIGR00767 166 GKGQRGLIVAPPKAGKTVLLQKIAQAI-T-RNHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMV 243 (415)
T ss_pred CCCCEEEEECCCCCChhHHHHHHHHhh-c-ccCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHH
Confidence 456789999999999999999999997 3 348999999999876 788999999965443322110111101111
Q ss_pred -HHHHHH-hhcceEEEEEcccccc
Q 002538 250 -LEIFKI-LREKKFVLLLDDIWER 271 (911)
Q Consensus 250 -~~l~~~-L~~k~~LlVlDdv~~~ 271 (911)
+..... -+|++++|++|++...
T Consensus 244 ~e~Ae~~~~~GkdVVLlIDEitR~ 267 (415)
T TIGR00767 244 IEKAKRLVEHKKDVVILLDSITRL 267 (415)
T ss_pred HHHHHHHHHcCCCeEEEEEChhHH
Confidence 111122 2589999999999643
No 102
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.98 E-value=4.7e-05 Score=77.09 Aligned_cols=177 Identities=17% Similarity=0.130 Sum_probs=94.0
Q ss_pred ccccch-HHHHHHHHHHhcc---CCceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCccChHHHHHHHHH
Q 002538 156 AIVKGL-ESTLEDVWRCLVE---ESAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDLQIEKNQEIIGK 231 (911)
Q Consensus 156 ~~~~Gr-~~~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 231 (911)
..|+|. .+..-.....+.+ .....+.|+|..|+|||.|.+++++...+ ...-..+++++ ..+....+..
T Consensus 9 nfv~g~~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~-~~~~~~v~y~~------~~~f~~~~~~ 81 (219)
T PF00308_consen 9 NFVVGESNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQK-QHPGKRVVYLS------AEEFIREFAD 81 (219)
T ss_dssp CS--TTTTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHH-HCTTS-EEEEE------HHHHHHHHHH
T ss_pred cCCcCCcHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHh-ccccccceeec------HHHHHHHHHH
Confidence 445564 3333333343433 23457899999999999999999998722 12223466664 3444444544
Q ss_pred HcCCCCCccCCCCHHHHHHHHHHHhhcceEEEEEcccccccc---ccc-ccCCCCCCCCCCCcEEEEEcCchhh------
Q 002538 232 KIGLFDDSWKNKNLDERALEIFKILREKKFVLLLDDIWERVN---LNK-VGVPLPSPQSTTASKVVFTTRFINV------ 301 (911)
Q Consensus 232 ~l~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~~---~~~-~~~~l~~~~~~~gs~IivTtR~~~v------ 301 (911)
.+... . ...+.+.++ .-=+|++||++.... |++ +...+.. ....|.+||+|++...-
T Consensus 82 ~~~~~-------~----~~~~~~~~~-~~DlL~iDDi~~l~~~~~~q~~lf~l~n~-~~~~~k~li~ts~~~P~~l~~~~ 148 (219)
T PF00308_consen 82 ALRDG-------E----IEEFKDRLR-SADLLIIDDIQFLAGKQRTQEELFHLFNR-LIESGKQLILTSDRPPSELSGLL 148 (219)
T ss_dssp HHHTT-------S----HHHHHHHHC-TSSEEEEETGGGGTTHHHHHHHHHHHHHH-HHHTTSEEEEEESS-TTTTTTS-
T ss_pred HHHcc-------c----chhhhhhhh-cCCEEEEecchhhcCchHHHHHHHHHHHH-HHhhCCeEEEEeCCCCccccccC
Confidence 44221 1 122333333 334889999976422 222 1111110 11346789999965432
Q ss_pred ---hhccCCcceEEccCCCHHHHHHHHHHHhCCcccCCCccHHHHHHHHHHHhCCcc
Q 002538 302 ---CGSMEAHRNFKVECLTEKHAWELFQMKVGEETLKSHPHVFELAQVVAKECGGLP 355 (911)
Q Consensus 302 ---~~~~~~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~GlP 355 (911)
...+...-++++++++.++-..++.+.+...... --+++..-|++.+.+..
T Consensus 149 ~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~---l~~~v~~~l~~~~~~~~ 202 (219)
T PF00308_consen 149 PDLRSRLSWGLVVELQPPDDEDRRRILQKKAKERGIE---LPEEVIEYLARRFRRDV 202 (219)
T ss_dssp HHHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT-----S-HHHHHHHHHHTTSSH
T ss_pred hhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCCC---CcHHHHHHHHHhhcCCH
Confidence 2233445679999999999999999988643322 22456666666655443
No 103
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=97.98 E-value=8.2e-05 Score=73.12 Aligned_cols=168 Identities=17% Similarity=0.136 Sum_probs=85.5
Q ss_pred cccchHHHHHHHHHHhc-----cCCceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCccChHHHHHHHHH
Q 002538 157 IVKGLESTLEDVWRCLV-----EESAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDLQIEKNQEIIGK 231 (911)
Q Consensus 157 ~~~Gr~~~~~~l~~~L~-----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 231 (911)
.++|.++-++.+.-++. .+....+-+||++|+||||||..++++. ...|. +++...-....++ ..++.
T Consensus 25 efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~---~~~~~---~~sg~~i~k~~dl-~~il~ 97 (233)
T PF05496_consen 25 EFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANEL---GVNFK---ITSGPAIEKAGDL-AAILT 97 (233)
T ss_dssp CS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHC---T--EE---EEECCC--SCHHH-HHHHH
T ss_pred HccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhcc---CCCeE---eccchhhhhHHHH-HHHHH
Confidence 35699888877644432 2357788999999999999999999997 34442 2222110011111 11111
Q ss_pred HcCCCCCccCCCCHHHHHHHHHHHhhcceEEEEEccccccc---------ccccccCCCCCCCCCC-----------CcE
Q 002538 232 KIGLFDDSWKNKNLDERALEIFKILREKKFVLLLDDIWERV---------NLNKVGVPLPSPQSTT-----------ASK 291 (911)
Q Consensus 232 ~l~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~---------~~~~~~~~l~~~~~~~-----------gs~ 291 (911)
. + +++-+|.+|++.... ..++....+.. ..+. =+-
T Consensus 98 ~-----------------------l-~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiii-G~g~~ar~~~~~l~~FTl 152 (233)
T PF05496_consen 98 N-----------------------L-KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIII-GKGPNARSIRINLPPFTL 152 (233)
T ss_dssp T--------------------------TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEB-SSSSS-BEEEEE----EE
T ss_pred h-----------------------c-CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEe-ccccccceeeccCCCceE
Confidence 1 1 234466667775421 01111000000 0111 122
Q ss_pred EEEEcCchhhhhccCCc--ceEEccCCCHHHHHHHHHHHhCCcccCCCccHHHHHHHHHHHhCCcchHHH
Q 002538 292 VVFTTRFINVCGSMEAH--RNFKVECLTEKHAWELFQMKVGEETLKSHPHVFELAQVVAKECGGLPLALI 359 (911)
Q Consensus 292 IivTtR~~~v~~~~~~~--~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~GlPLai~ 359 (911)
|=-|||..-+..-+..- -+.+++..+.+|-.++..+.+..-+. +--++.+.+|++.|.|-|--+.
T Consensus 153 igATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i---~i~~~~~~~Ia~rsrGtPRiAn 219 (233)
T PF05496_consen 153 IGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNI---EIDEDAAEEIARRSRGTPRIAN 219 (233)
T ss_dssp EEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT----EE-HHHHHHHHHCTTTSHHHHH
T ss_pred eeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCC---CcCHHHHHHHHHhcCCChHHHH
Confidence 33588865554433322 24589999999999999887754331 2335888999999999997443
No 104
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.97 E-value=0.00013 Score=81.80 Aligned_cols=177 Identities=17% Similarity=0.158 Sum_probs=104.3
Q ss_pred ccccchHHHHHHHHHHhccCCce-EEEEEcCCCChHHHHHHHHHhhhccCC------------------CCCceEEEEEe
Q 002538 156 AIVKGLESTLEDVWRCLVEESAG-IIGLYGMGGVGKTTLLTRINNKFLESP------------------SDFDCVIWVVV 216 (911)
Q Consensus 156 ~~~~Gr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~------------------~~f~~~~wv~~ 216 (911)
..++|.+..++.+.+.+..++.+ .+-++|+.|+||||+|+.+++...-.. ..+.-++.+..
T Consensus 13 ~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~eida 92 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEIDA 92 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEEec
Confidence 34679999999998888877765 788999999999999999987531000 01111233333
Q ss_pred CCccChHHHHHHHHHHcCCCCCccCCCCHHHHHHHHHHHhhcceEEEEEccccccc--ccccccCCCCCCCCCCCcEEEE
Q 002538 217 SKDLQIEKNQEIIGKKIGLFDDSWKNKNLDERALEIFKILREKKFVLLLDDIWERV--NLNKVGVPLPSPQSTTASKVVF 294 (911)
Q Consensus 217 s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~gs~Iiv 294 (911)
+....+.++. .+.+.... .-..+++-++|+|++.... ....+...+. .....+++|+
T Consensus 93 as~~~vddIR-~Iie~~~~------------------~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LE--ePp~~v~fIl 151 (491)
T PRK14964 93 ASNTSVDDIK-VILENSCY------------------LPISSKFKVYIIDEVHMLSNSAFNALLKTLE--EPAPHVKFIL 151 (491)
T ss_pred ccCCCHHHHH-HHHHHHHh------------------ccccCCceEEEEeChHhCCHHHHHHHHHHHh--CCCCCeEEEE
Confidence 2222222211 11111100 0013456689999997542 2333333333 2234566665
Q ss_pred Ec-Cchhhhhc-cCCcceEEccCCCHHHHHHHHHHHhCCcccCCCccHHHHHHHHHHHhCCcch
Q 002538 295 TT-RFINVCGS-MEAHRNFKVECLTEKHAWELFQMKVGEETLKSHPHVFELAQVVAKECGGLPL 356 (911)
Q Consensus 295 Tt-R~~~v~~~-~~~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~GlPL 356 (911)
+| ....+... .+....+++.+++.++....+.+.+...+.. --.+....|++.++|.+-
T Consensus 152 atte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~---i~~eAL~lIa~~s~GslR 212 (491)
T PRK14964 152 ATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIE---HDEESLKLIAENSSGSMR 212 (491)
T ss_pred EeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHH
Confidence 54 44444332 2345678999999999998888877543311 124566788999988765
No 105
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=97.96 E-value=7.7e-05 Score=86.24 Aligned_cols=193 Identities=18% Similarity=0.120 Sum_probs=106.2
Q ss_pred ccccchHHHHHHHHHHhccCCce-EEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCccChHHHHHHHHHHcC
Q 002538 156 AIVKGLESTLEDVWRCLVEESAG-IIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDLQIEKNQEIIGKKIG 234 (911)
Q Consensus 156 ~~~~Gr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 234 (911)
..|+|.+..++.+.+.+..+++. .+.++|..|+||||+|+.+++...- ...+. +..+..-..-+.|...-.
T Consensus 16 ~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c-~~~~~-------~~pCg~C~~C~~i~~g~~ 87 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNC-ETGIT-------ATPCGECDNCREIEQGRF 87 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhh-ccCCC-------CCCCCCCHHHHHHHcCCC
Confidence 34679999999999999877665 4679999999999999999887621 11000 000000011111110000
Q ss_pred CCC---CccCCCCHHHH---HHHHHH-HhhcceEEEEEccccccc--ccccccCCCCCCCCCCCcEEEE-EcCchhhhh-
Q 002538 235 LFD---DSWKNKNLDER---ALEIFK-ILREKKFVLLLDDIWERV--NLNKVGVPLPSPQSTTASKVVF-TTRFINVCG- 303 (911)
Q Consensus 235 ~~~---~~~~~~~~~~~---~~~l~~-~L~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~gs~Iiv-TtR~~~v~~- 303 (911)
... +.......+++ ...+.. -..+++-++|+|++.... ....+...+. ......++|+ ||....+..
T Consensus 88 ~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLE--EPp~~v~FIL~Tt~~~kLl~T 165 (647)
T PRK07994 88 VDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLE--EPPEHVKFLLATTDPQKLPVT 165 (647)
T ss_pred CCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHH--cCCCCeEEEEecCCccccchH
Confidence 000 00001112222 222111 124667799999997642 3333333332 2223455555 444444432
Q ss_pred ccCCcceEEccCCCHHHHHHHHHHHhCCcccCCCccHHHHHHHHHHHhCCcch-HHHHH
Q 002538 304 SMEAHRNFKVECLTEKHAWELFQMKVGEETLKSHPHVFELAQVVAKECGGLPL-ALITI 361 (911)
Q Consensus 304 ~~~~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~GlPL-ai~~~ 361 (911)
..+....|++++++.++....+.+.+..... ..-.+....|++.++|.+- |+..+
T Consensus 166 I~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i---~~e~~aL~~Ia~~s~Gs~R~Al~ll 221 (647)
T PRK07994 166 ILSRCLQFHLKALDVEQIRQQLEHILQAEQI---PFEPRALQLLARAADGSMRDALSLT 221 (647)
T ss_pred HHhhheEeeCCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 2233578999999999999988876533221 1123566789999999886 44444
No 106
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=97.96 E-value=0.00012 Score=79.46 Aligned_cols=197 Identities=13% Similarity=0.057 Sum_probs=110.1
Q ss_pred ccccchHHHHHHHHHHhccCCce-EEEEEcCCCChHHHHHHHHHhhhccCCC-CCceEEEEEeCCccChHHHHHHHHHH-
Q 002538 156 AIVKGLESTLEDVWRCLVEESAG-IIGLYGMGGVGKTTLLTRINNKFLESPS-DFDCVIWVVVSKDLQIEKNQEIIGKK- 232 (911)
Q Consensus 156 ~~~~Gr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~-~f~~~~wv~~s~~~~~~~~~~~i~~~- 232 (911)
..++|-++..+.+...+..++.+ .+.|+|..|+||||+|+.+.+....... .+... ............+.+...
T Consensus 23 ~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~---~~~~~~~~c~~c~~i~~~~ 99 (351)
T PRK09112 23 TRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPE---TLADPDPASPVWRQIAQGA 99 (351)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcc---ccCCCCCCCHHHHHHHcCC
Confidence 34679999999999999877654 5889999999999999999888621100 01111 001111111222333222
Q ss_pred ------cCCCCCc-----cCCCCHHHHHHHHHHHhh-----cceEEEEEccccccc--ccccccCCCCCCCCCCCcEEEE
Q 002538 233 ------IGLFDDS-----WKNKNLDERALEIFKILR-----EKKFVLLLDDIWERV--NLNKVGVPLPSPQSTTASKVVF 294 (911)
Q Consensus 233 ------l~~~~~~-----~~~~~~~~~~~~l~~~L~-----~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~gs~Iiv 294 (911)
+..+.+. ......+++ ..+.+++. +++-++|+|+++... ....+...+.. ......-|++
T Consensus 100 hPdl~~l~~~~~~~~~~~~~~I~vd~i-R~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEE-pp~~~~fiLi 177 (351)
T PRK09112 100 HPNLLHITRPFDEKTGKFKTAITVDEI-RRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEE-PPARALFILI 177 (351)
T ss_pred CCCEEEeecccccccccccccCCHHHH-HHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhc-CCCCceEEEE
Confidence 1001000 011123333 34444443 566799999997642 22223222221 1122333555
Q ss_pred EcCchhhhhcc-CCcceEEccCCCHHHHHHHHHHHhCCcccCCCccHHHHHHHHHHHhCCcchHHHHHH
Q 002538 295 TTRFINVCGSM-EAHRNFKVECLTEKHAWELFQMKVGEETLKSHPHVFELAQVVAKECGGLPLALITIG 362 (911)
Q Consensus 295 TtR~~~v~~~~-~~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~g 362 (911)
|++...+.... +....+++.+++.++...++.+...... --.+....+++.++|.|.....+.
T Consensus 178 t~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~-----~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 178 SHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG-----SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred ECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC-----CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 55543343222 2346899999999999999987432111 113556789999999998654443
No 107
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.96 E-value=0.00013 Score=84.17 Aligned_cols=192 Identities=15% Similarity=0.104 Sum_probs=103.6
Q ss_pred cccchHHHHHHHHHHhccCCc-eEEEEEcCCCChHHHHHHHHHhhhccCC-CCCceEEEEEeCCccChHHHHHHHHHHcC
Q 002538 157 IVKGLESTLEDVWRCLVEESA-GIIGLYGMGGVGKTTLLTRINNKFLESP-SDFDCVIWVVVSKDLQIEKNQEIIGKKIG 234 (911)
Q Consensus 157 ~~~Gr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 234 (911)
.|+|-+..++.+.+++..++. ..+.++|..|+||||+|+.+.+...-.. ......-.-.+ +.-..-+.|...-.
T Consensus 17 dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pC----g~C~~C~~i~~g~h 92 (618)
T PRK14951 17 EMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPC----GVCQACRDIDSGRF 92 (618)
T ss_pred HhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCC----CccHHHHHHHcCCC
Confidence 466999999999999988766 4568999999999999999977652100 00000000000 00000011100000
Q ss_pred CC---CCccCCCCHHHHHHHHHHHh-----hcceEEEEEccccccc--ccccccCCCCCCCCCCCcEEEEEc-Cchhhhh
Q 002538 235 LF---DDSWKNKNLDERALEIFKIL-----REKKFVLLLDDIWERV--NLNKVGVPLPSPQSTTASKVVFTT-RFINVCG 303 (911)
Q Consensus 235 ~~---~~~~~~~~~~~~~~~l~~~L-----~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~gs~IivTt-R~~~v~~ 303 (911)
.. .+.......+++.+.+ +.. .++.-++|||+|+... .+..+...+. ......++|++| ....+..
T Consensus 93 ~D~~eldaas~~~Vd~iReli-~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLE--EPP~~~~fIL~Ttd~~kil~ 169 (618)
T PRK14951 93 VDYTELDAASNRGVDEVQQLL-EQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLE--EPPEYLKFVLATTDPQKVPV 169 (618)
T ss_pred CceeecCcccccCHHHHHHHH-HHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcc--cCCCCeEEEEEECCchhhhH
Confidence 00 0000111222222222 111 2445589999998642 3444444343 223355565554 4344432
Q ss_pred -ccCCcceEEccCCCHHHHHHHHHHHhCCcccCCCccHHHHHHHHHHHhCCcchHH
Q 002538 304 -SMEAHRNFKVECLTEKHAWELFQMKVGEETLKSHPHVFELAQVVAKECGGLPLAL 358 (911)
Q Consensus 304 -~~~~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~GlPLai 358 (911)
..+....+++++++.++....+.+.+...+.. --.+....|++.++|.+--+
T Consensus 170 TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~---ie~~AL~~La~~s~GslR~a 222 (618)
T PRK14951 170 TVLSRCLQFNLRPMAPETVLEHLTQVLAAENVP---AEPQALRLLARAARGSMRDA 222 (618)
T ss_pred HHHHhceeeecCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHH
Confidence 23345789999999999998888776543311 12356788899999877533
No 108
>PTZ00202 tuzin; Provisional
Probab=97.93 E-value=8e-05 Score=79.79 Aligned_cols=158 Identities=17% Similarity=0.134 Sum_probs=95.9
Q ss_pred ccccchHHHHHHHHHHhcc---CCceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCccChHHHHHHHHHH
Q 002538 156 AIVKGLESTLEDVWRCLVE---ESAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDLQIEKNQEIIGKK 232 (911)
Q Consensus 156 ~~~~Gr~~~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 232 (911)
+.++||+.+...+...|.+ +..+++.|.|++|+|||||++.+.... . ...++.-.. +..+++..++.+
T Consensus 262 ~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l-~------~~qL~vNpr--g~eElLr~LL~A 332 (550)
T PTZ00202 262 RQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKE-G------MPAVFVDVR--GTEDTLRSVVKA 332 (550)
T ss_pred cCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcC-C------ceEEEECCC--CHHHHHHHHHHH
Confidence 4577999999999998864 234599999999999999999998765 1 123333333 679999999999
Q ss_pred cCCCCCccCCCCHHHHHHHHHHHh-----h-cceEEEEEcccccccccccc---cCCCCCCCCCCCcEEEEEcCchhhhh
Q 002538 233 IGLFDDSWKNKNLDERALEIFKIL-----R-EKKFVLLLDDIWERVNLNKV---GVPLPSPQSTTASKVVFTTRFINVCG 303 (911)
Q Consensus 233 l~~~~~~~~~~~~~~~~~~l~~~L-----~-~k~~LlVlDdv~~~~~~~~~---~~~l~~~~~~~gs~IivTtR~~~v~~ 303 (911)
|+.+.. ....++...|.+.+ . |++.+||+- ..+-..+..+ ...+. ....-|.|++----+.+..
T Consensus 333 LGV~p~----~~k~dLLrqIqeaLl~~~~e~GrtPVLII~-lreg~~l~rvyne~v~la--~drr~ch~v~evpleslt~ 405 (550)
T PTZ00202 333 LGVPNV----EACGDLLDFISEACRRAKKMNGETPLLVLK-LREGSSLQRVYNEVVALA--CDRRLCHVVIEVPLESLTI 405 (550)
T ss_pred cCCCCc----ccHHHHHHHHHHHHHHHHHhCCCCEEEEEE-ecCCCcHHHHHHHHHHHH--ccchhheeeeeehHhhcch
Confidence 998432 22233334443333 2 566777763 1111111111 01111 2334566665443332211
Q ss_pred c---cCCcceEEccCCCHHHHHHHHHHHh
Q 002538 304 S---MEAHRNFKVECLTEKHAWELFQMKV 329 (911)
Q Consensus 304 ~---~~~~~~~~l~~L~~~es~~Lf~~~a 329 (911)
. +.--..|-+.+++.++|...-.+..
T Consensus 406 ~~~~lprldf~~vp~fsr~qaf~y~~h~~ 434 (550)
T PTZ00202 406 ANTLLPRLDFYLVPNFSRSQAFAYTQHAI 434 (550)
T ss_pred hcccCccceeEecCCCCHHHHHHHHhhcc
Confidence 1 1123467889999999988876653
No 109
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.93 E-value=0.00012 Score=83.44 Aligned_cols=185 Identities=16% Similarity=0.138 Sum_probs=104.9
Q ss_pred ccccchHHHHHHHHHHhccCCce-EEEEEcCCCChHHHHHHHHHhhhccCCCCC-------------------ceEEEEE
Q 002538 156 AIVKGLESTLEDVWRCLVEESAG-IIGLYGMGGVGKTTLLTRINNKFLESPSDF-------------------DCVIWVV 215 (911)
Q Consensus 156 ~~~~Gr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f-------------------~~~~wv~ 215 (911)
..++|-+..++.+.+++..++++ .+-++|+.|+||||+|+.+++... -...+ .-++.+.
T Consensus 16 ~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~-c~~~~~~~pCg~C~~C~~i~~g~~~d~~eid 94 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLN-CEKGVSANPCNDCENCREIDEGRFPDLFEVD 94 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhc-CCCCCCcccCCCCHHHHHHhcCCCceEEEEc
Confidence 34679999999999999887665 468999999999999999988762 11111 1122222
Q ss_pred eCCccChHHHHHHHHHHcCCCCCccCCCCHHHHHHHHHHHhhcceEEEEEcccccc--cccccccCCCCCCCCCCCcEEE
Q 002538 216 VSKDLQIEKNQEIIGKKIGLFDDSWKNKNLDERALEIFKILREKKFVLLLDDIWER--VNLNKVGVPLPSPQSTTASKVV 293 (911)
Q Consensus 216 ~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~gs~Ii 293 (911)
.+....++++ +.+.+.+.. .-..++.-++|+|+|... .....+...+. .....+++|
T Consensus 95 aas~~~v~~i-R~l~~~~~~------------------~p~~~~~kV~iIDE~~~ls~~a~naLLk~LE--epp~~~~fI 153 (509)
T PRK14958 95 AASRTKVEDT-RELLDNIPY------------------APTKGRFKVYLIDEVHMLSGHSFNALLKTLE--EPPSHVKFI 153 (509)
T ss_pred ccccCCHHHH-HHHHHHHhh------------------ccccCCcEEEEEEChHhcCHHHHHHHHHHHh--ccCCCeEEE
Confidence 2111111111 111111110 011356668999999764 23333333332 222356666
Q ss_pred EEcCc-hhhhhc-cCCcceEEccCCCHHHHHHHHHHHhCCcccCCCccHHHHHHHHHHHhCCcch-HHHHHHhhh
Q 002538 294 FTTRF-INVCGS-MEAHRNFKVECLTEKHAWELFQMKVGEETLKSHPHVFELAQVVAKECGGLPL-ALITIGRAM 365 (911)
Q Consensus 294 vTtR~-~~v~~~-~~~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~GlPL-ai~~~g~~l 365 (911)
++|.+ ..+... .+....+++++++.++....+.+.+...+.. --.+....|++.++|.+- |+..+-..+
T Consensus 154 lattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~---~~~~al~~ia~~s~GslR~al~lLdq~i 225 (509)
T PRK14958 154 LATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVE---FENAALDLLARAANGSVRDALSLLDQSI 225 (509)
T ss_pred EEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 55443 333222 2234578999999998877766665433211 123456788899999875 444443333
No 110
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.91 E-value=1.9e-06 Score=97.05 Aligned_cols=129 Identities=27% Similarity=0.390 Sum_probs=104.3
Q ss_pred CCCcccceEEEeecCCcccCCC-CCCCCCccEEEcccCcccccChhhhccCCCCcEEEccCCCCcccCccccCcCCCCEE
Q 002538 513 VEGWEKVKRLLLMKNHIKHLPD-IPTCPHLLTLFLSHNQLRWISEDFFQFMPSLKVLNLSFTKRHKFPSGISKLASLQLI 591 (911)
Q Consensus 513 ~~~~~~l~~L~l~~~~~~~l~~-~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L 591 (911)
...+.++..+++.+|.+..+.. +..+++|++|++++|.++.+.. +..++.|+.|++++|.+..+. .+..++.|+.+
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N~i~~~~-~~~~l~~L~~l 167 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGNLISDIS-GLESLKSLKLL 167 (414)
T ss_pred cccccceeeeeccccchhhcccchhhhhcchheeccccccccccc--hhhccchhhheeccCcchhcc-CCccchhhhcc
Confidence 4566789999999999999988 8999999999999999988876 577888999999999998876 56669999999
Q ss_pred eccCCCcCCcchh-hhccCcCcEEecCCCccccccChhhhccCccCcEEEecCCCCC
Q 002538 592 DLSYTSIRGLPEE-LKALINLKCLNLDQTKFLVTIPRHLISSFSMLHVLRMFGSGSS 647 (911)
Q Consensus 592 ~L~~~~i~~lp~~-l~~L~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~ 647 (911)
++++|.+..++.. +..+.+|+.+++.+|. +..+.. ...+..+..+++..+.+.
T Consensus 168 ~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~-i~~i~~--~~~~~~l~~~~l~~n~i~ 221 (414)
T KOG0531|consen 168 DLSYNRIVDIENDELSELISLEELDLGGNS-IREIEG--LDLLKKLVLLSLLDNKIS 221 (414)
T ss_pred cCCcchhhhhhhhhhhhccchHHHhccCCc-hhcccc--hHHHHHHHHhhcccccce
Confidence 9999999998764 6889999999999986 344332 344445555555555443
No 111
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.90 E-value=0.00011 Score=81.76 Aligned_cols=199 Identities=15% Similarity=0.139 Sum_probs=107.7
Q ss_pred cccchHHHHHHHHHHhccCCce-EEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEE-eCCccChHHHHHHHHHHcC
Q 002538 157 IVKGLESTLEDVWRCLVEESAG-IIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVV-VSKDLQIEKNQEIIGKKIG 234 (911)
Q Consensus 157 ~~~Gr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~-~s~~~~~~~~~~~i~~~l~ 234 (911)
.|+|.+..++.+.+++..++++ .+.++|+.|+||||+|+.+++... -........|.. +......-..=+.+.....
T Consensus 17 eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~-c~~~~~~~~~~~~~~~~c~~c~~c~~~~~~~~ 95 (397)
T PRK14955 17 DITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVN-CQRMIDDADYLQEVTEPCGECESCRDFDAGTS 95 (397)
T ss_pred hccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhc-CCCCcCcccccccCCCCCCCCHHHHHHhcCCC
Confidence 4669999999999998877765 488999999999999999988762 111111111110 0000000000001110000
Q ss_pred CCC---CccCCCCHHHHHHHHHHHh-----hcceEEEEEccccccc--ccccccCCCCCCCCCCCcEEEEEc-Cchhhhh
Q 002538 235 LFD---DSWKNKNLDERALEIFKIL-----REKKFVLLLDDIWERV--NLNKVGVPLPSPQSTTASKVVFTT-RFINVCG 303 (911)
Q Consensus 235 ~~~---~~~~~~~~~~~~~~l~~~L-----~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~gs~IivTt-R~~~v~~ 303 (911)
..- +.......+++.. +.+.+ .+++-++|+|++.... .+..+...+. .....+.+|++| +...+..
T Consensus 96 ~n~~~~~~~~~~~id~Ir~-l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LE--ep~~~t~~Il~t~~~~kl~~ 172 (397)
T PRK14955 96 LNISEFDAASNNSVDDIRL-LRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLE--EPPPHAIFIFATTELHKIPA 172 (397)
T ss_pred CCeEeecccccCCHHHHHH-HHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHh--cCCCCeEEEEEeCChHHhHH
Confidence 000 0001111233222 22323 3456688999997643 4444444443 333456665554 4444433
Q ss_pred cc-CCcceEEccCCCHHHHHHHHHHHhCCcccCCCccHHHHHHHHHHHhCCcch-HHHHHH
Q 002538 304 SM-EAHRNFKVECLTEKHAWELFQMKVGEETLKSHPHVFELAQVVAKECGGLPL-ALITIG 362 (911)
Q Consensus 304 ~~-~~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~GlPL-ai~~~g 362 (911)
.. .....+++.++++++....+...+..... .--.+.+..+++.++|.+- |+..+-
T Consensus 173 tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~---~i~~~al~~l~~~s~g~lr~a~~~L~ 230 (397)
T PRK14955 173 TIASRCQRFNFKRIPLEEIQQQLQGICEAEGI---SVDADALQLIGRKAQGSMRDAQSILD 230 (397)
T ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 22 22357899999999988888776632221 1224677899999999775 444443
No 112
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=97.90 E-value=0.00016 Score=82.28 Aligned_cols=196 Identities=15% Similarity=0.083 Sum_probs=105.2
Q ss_pred ccccchHHHHHHHHHHhccCCce-EEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCccChHHHHHHHHHHcC
Q 002538 156 AIVKGLESTLEDVWRCLVEESAG-IIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDLQIEKNQEIIGKKIG 234 (911)
Q Consensus 156 ~~~~Gr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 234 (911)
..++|.+..++.+.+.+..++.+ .+.++|+.|+||||+|+.+++... -.. |.... .++.-..-+.+.....
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~-C~~------~~~~~-~Cg~C~sCr~i~~~~h 87 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAIN-CLN------PKDGD-CCNSCSVCESINTNQS 87 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhc-CCC------CCCCC-CCcccHHHHHHHcCCC
Confidence 34669999999999998776554 688999999999999999988762 111 11100 0011111111111100
Q ss_pred CCC---CccCCCCHHHH---HHHHHH-HhhcceEEEEEcccccc--cccccccCCCCCCCCCCCcEEEEEc-Cchhhhhc
Q 002538 235 LFD---DSWKNKNLDER---ALEIFK-ILREKKFVLLLDDIWER--VNLNKVGVPLPSPQSTTASKVVFTT-RFINVCGS 304 (911)
Q Consensus 235 ~~~---~~~~~~~~~~~---~~~l~~-~L~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~gs~IivTt-R~~~v~~~ 304 (911)
..- +.......+++ ...+.. -..+++-++|+|+++.. ..+..+...+. .......+|++| ....+...
T Consensus 88 ~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLE--EPp~~tvfIL~Tt~~~KLl~T 165 (605)
T PRK05896 88 VDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLE--EPPKHVVFIFATTEFQKIPLT 165 (605)
T ss_pred CceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHH--hCCCcEEEEEECCChHhhhHH
Confidence 000 00001112221 111111 01234447999999753 23333333332 222345555444 43344322
Q ss_pred -cCCcceEEccCCCHHHHHHHHHHHhCCcccCCCccHHHHHHHHHHHhCCcch-HHHHHHhh
Q 002538 305 -MEAHRNFKVECLTEKHAWELFQMKVGEETLKSHPHVFELAQVVAKECGGLPL-ALITIGRA 364 (911)
Q Consensus 305 -~~~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~GlPL-ai~~~g~~ 364 (911)
.+....+++.+++.++....+.+.+...+... -.+.+..+++.++|.+- |+..+-.+
T Consensus 166 I~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~I---s~eal~~La~lS~GdlR~AlnlLekL 224 (605)
T PRK05896 166 IISRCQRYNFKKLNNSELQELLKSIAKKEKIKI---EDNAIDKIADLADGSLRDGLSILDQL 224 (605)
T ss_pred HHhhhhhcccCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 23356789999999999988887664332111 13567888999999654 55555543
No 113
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.89 E-value=0.00021 Score=79.31 Aligned_cols=184 Identities=15% Similarity=0.154 Sum_probs=103.1
Q ss_pred cccchHHHHHHHHHHhccCCce-EEEEEcCCCChHHHHHHHHHhhhccC-----CCCCceE-EEEEeCCccChHHHHHHH
Q 002538 157 IVKGLESTLEDVWRCLVEESAG-IIGLYGMGGVGKTTLLTRINNKFLES-----PSDFDCV-IWVVVSKDLQIEKNQEII 229 (911)
Q Consensus 157 ~~~Gr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~-----~~~f~~~-~wv~~s~~~~~~~~~~~i 229 (911)
.++|.+..++.+.+.+..+..+ .+.++|+.|+||||+|+.+.+..... ...|... +-+......+...+ ..+
T Consensus 18 ~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i-~~l 96 (367)
T PRK14970 18 DVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSVDDI-RNL 96 (367)
T ss_pred hcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHHHH-HHH
Confidence 3569999999999999876554 78899999999999999998875210 0112111 11111111111111 111
Q ss_pred HHHcCCCCCccCCCCHHHHHHHHHHHhhcceEEEEEccccccc--ccccccCCCCCCCCCCCcEEEEEc-Cchhhhhc-c
Q 002538 230 GKKIGLFDDSWKNKNLDERALEIFKILREKKFVLLLDDIWERV--NLNKVGVPLPSPQSTTASKVVFTT-RFINVCGS-M 305 (911)
Q Consensus 230 ~~~l~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~gs~IivTt-R~~~v~~~-~ 305 (911)
.+.+... -..+++-++|+|++.... .+..+...+. .....+.+|++| ....+... .
T Consensus 97 ~~~~~~~------------------p~~~~~kiviIDE~~~l~~~~~~~ll~~le--~~~~~~~~Il~~~~~~kl~~~l~ 156 (367)
T PRK14970 97 IDQVRIP------------------PQTGKYKIYIIDEVHMLSSAAFNAFLKTLE--EPPAHAIFILATTEKHKIIPTIL 156 (367)
T ss_pred HHHHhhc------------------cccCCcEEEEEeChhhcCHHHHHHHHHHHh--CCCCceEEEEEeCCcccCCHHHH
Confidence 1111100 012455589999997542 2333322222 222344555544 43333322 2
Q ss_pred CCcceEEccCCCHHHHHHHHHHHhCCcccCCCccHHHHHHHHHHHhCCcch-HHHHHHhh
Q 002538 306 EAHRNFKVECLTEKHAWELFQMKVGEETLKSHPHVFELAQVVAKECGGLPL-ALITIGRA 364 (911)
Q Consensus 306 ~~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~GlPL-ai~~~g~~ 364 (911)
+....++..++++++....+.+.+...+... -.+....+++.++|.+- |+..+-.+
T Consensus 157 sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~i---~~~al~~l~~~~~gdlr~~~~~lekl 213 (367)
T PRK14970 157 SRCQIFDFKRITIKDIKEHLAGIAVKEGIKF---EDDALHIIAQKADGALRDALSIFDRV 213 (367)
T ss_pred hcceeEecCCccHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 2345789999999999888887664433111 14677888888988654 44444433
No 114
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.89 E-value=1.3e-05 Score=57.52 Aligned_cols=38 Identities=29% Similarity=0.486 Sum_probs=17.0
Q ss_pred CCcEEEccCCCCcccCccccCcCCCCEEeccCCCcCCc
Q 002538 564 SLKVLNLSFTKRHKFPSGISKLASLQLIDLSYTSIRGL 601 (911)
Q Consensus 564 ~L~~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~l 601 (911)
+|++|++++|+++.+|..+++|++|++|++++|+++++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCC
Confidence 34444444444444444444444444444444444443
No 115
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.88 E-value=0.00046 Score=71.29 Aligned_cols=184 Identities=17% Similarity=0.131 Sum_probs=111.7
Q ss_pred HHHHHHHhcc---CCceEEEEEcCCCChHHHHHHHHHhhhccCCCCC----ceEEEEEeCCccChHHHHHHHHHHcCCCC
Q 002538 165 LEDVWRCLVE---ESAGIIGLYGMGGVGKTTLLTRINNKFLESPSDF----DCVIWVVVSKDLQIEKNQEIIGKKIGLFD 237 (911)
Q Consensus 165 ~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f----~~~~wv~~s~~~~~~~~~~~i~~~l~~~~ 237 (911)
++++.+++.. ...+-+.|+|.+|.|||++++.+.... .....- -.++.|.....++...++..|+.+++.+.
T Consensus 46 L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~h-p~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~ 124 (302)
T PF05621_consen 46 LDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLH-PPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPY 124 (302)
T ss_pred HHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHC-CCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCccc
Confidence 4445555543 356789999999999999999998775 221111 15788888899999999999999999875
Q ss_pred CccCCCCHHHHHHHHHHHhhc-ceEEEEEccccccc------------ccccccCCCCCCCCCCCcEEEEEcCchhhhhc
Q 002538 238 DSWKNKNLDERALEIFKILRE-KKFVLLLDDIWERV------------NLNKVGVPLPSPQSTTASKVVFTTRFINVCGS 304 (911)
Q Consensus 238 ~~~~~~~~~~~~~~l~~~L~~-k~~LlVlDdv~~~~------------~~~~~~~~l~~~~~~~gs~IivTtR~~~v~~~ 304 (911)
. ...+...........++. +-=+||+|++.+.- .+..++..+ .-+-|.+-|+.-.-+-.
T Consensus 125 ~--~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL------~ipiV~vGt~~A~~al~ 196 (302)
T PF05621_consen 125 R--PRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNEL------QIPIVGVGTREAYRALR 196 (302)
T ss_pred C--CCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhcc------CCCeEEeccHHHHHHhc
Confidence 3 234445555555566654 44589999997631 122222222 23445565553222211
Q ss_pred cC-----CcceEEccCCCHHH-HHHHHHHHhC--CcccCCCccHHHHHHHHHHHhCCcchH
Q 002538 305 ME-----AHRNFKVECLTEKH-AWELFQMKVG--EETLKSHPHVFELAQVVAKECGGLPLA 357 (911)
Q Consensus 305 ~~-----~~~~~~l~~L~~~e-s~~Lf~~~a~--~~~~~~~~~~~~~~~~i~~~c~GlPLa 357 (911)
.+ -..++.+.....++ ...|+..... .-...+.-...+++..|...++|+.=-
T Consensus 197 ~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~ 257 (302)
T PF05621_consen 197 TDPQLASRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGE 257 (302)
T ss_pred cCHHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHH
Confidence 11 12456666666544 3444433221 111123334578999999999997543
No 116
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.87 E-value=4.7e-07 Score=100.45 Aligned_cols=128 Identities=25% Similarity=0.332 Sum_probs=97.4
Q ss_pred CCcccceEEEeecCCcccCCC-CCCCCCccEEEcccCcccccChhhhccCCCCcEEEccCCCCcccCccc-cCcCCCCEE
Q 002538 514 EGWEKVKRLLLMKNHIKHLPD-IPTCPHLLTLFLSHNQLRWISEDFFQFMPSLKVLNLSFTKRHKFPSGI-SKLASLQLI 591 (911)
Q Consensus 514 ~~~~~l~~L~l~~~~~~~l~~-~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~i-~~l~~L~~L 591 (911)
..|.++...+++.|.+..+.. +.-++.|+.|+|++|.++... ++..|++|+.|||++|.+..+|.-- ..+ +|+.|
T Consensus 161 ~~Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L 237 (1096)
T KOG1859|consen 161 PVWNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLL 237 (1096)
T ss_pred hhhhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhh-hheee
Confidence 346778888888888766643 566788999999999887664 5788999999999999888887422 233 38999
Q ss_pred eccCCCcCCcchhhhccCcCcEEecCCCcccc--ccChhhhccCccCcEEEecCCCCC
Q 002538 592 DLSYTSIRGLPEELKALINLKCLNLDQTKFLV--TIPRHLISSFSMLHVLRMFGSGSS 647 (911)
Q Consensus 592 ~L~~~~i~~lp~~l~~L~~L~~L~L~~~~~l~--~lp~~~i~~l~~L~~L~l~~~~~~ 647 (911)
++++|.++++ .++.+|++|+.||+++|-... ++.+ ++.|..|+.|++.||...
T Consensus 238 ~lrnN~l~tL-~gie~LksL~~LDlsyNll~~hseL~p--LwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 238 NLRNNALTTL-RGIENLKSLYGLDLSYNLLSEHSELEP--LWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred eecccHHHhh-hhHHhhhhhhccchhHhhhhcchhhhH--HHHHHHHHHHhhcCCccc
Confidence 9999988887 478899999999999885322 2222 677888889998888754
No 117
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.87 E-value=2.2e-06 Score=75.75 Aligned_cols=109 Identities=19% Similarity=0.312 Sum_probs=89.4
Q ss_pred ceEEEeecCCcccCCC----CCCCCCccEEEcccCcccccChhhhccCCCCcEEEccCCCCcccCccccCcCCCCEEecc
Q 002538 519 VKRLLLMKNHIKHLPD----IPTCPHLLTLFLSHNQLRWISEDFFQFMPSLKVLNLSFTKRHKFPSGISKLASLQLIDLS 594 (911)
Q Consensus 519 l~~L~l~~~~~~~l~~----~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~L~ 594 (911)
+..++++.+.+-.+++ +.....|...++++|.++..|+.+-..++-+..|++++|.+..+|..+..++.|+.|+++
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~ 108 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLR 108 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccc
Confidence 3345555555443332 466678888999999999999988788889999999999999999999999999999999
Q ss_pred CCCcCCcchhhhccCcCcEEecCCCccccccChh
Q 002538 595 YTSIRGLPEELKALINLKCLNLDQTKFLVTIPRH 628 (911)
Q Consensus 595 ~~~i~~lp~~l~~L~~L~~L~L~~~~~l~~lp~~ 628 (911)
.|.+...|.-+..|.+|-.|+..++. ...+|.+
T Consensus 109 ~N~l~~~p~vi~~L~~l~~Lds~~na-~~eid~d 141 (177)
T KOG4579|consen 109 FNPLNAEPRVIAPLIKLDMLDSPENA-RAEIDVD 141 (177)
T ss_pred cCccccchHHHHHHHhHHHhcCCCCc-cccCcHH
Confidence 99999999998889999999998886 5677765
No 118
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.87 E-value=0.00017 Score=82.87 Aligned_cols=180 Identities=18% Similarity=0.215 Sum_probs=105.2
Q ss_pred ccccchHHHHHHHHHHhccCCce-EEEEEcCCCChHHHHHHHHHhhhccCCCC-------------------CceEEEEE
Q 002538 156 AIVKGLESTLEDVWRCLVEESAG-IIGLYGMGGVGKTTLLTRINNKFLESPSD-------------------FDCVIWVV 215 (911)
Q Consensus 156 ~~~~Gr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~~-------------------f~~~~wv~ 215 (911)
..++|.+..++.+.+++..++.+ .+.++|..|+||||+|+.+.+... -... |.-.+++.
T Consensus 16 ~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~-c~~~~~~~pcg~C~~C~~i~~~~~~d~~ei~ 94 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLN-CETGVTATPCGVCSACLEIDSGRFVDLIEVD 94 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhc-CCCCCCCCCCCCCHHHHHHhcCCCCceeEee
Confidence 34679999999999999887665 467999999999999999988762 1110 11112221
Q ss_pred eCCccChHHHHHHHHHHcCCCCCccCCCCHHHHHHHHHHHh-----hcceEEEEEccccccc--ccccccCCCCCCCCCC
Q 002538 216 VSKDLQIEKNQEIIGKKIGLFDDSWKNKNLDERALEIFKIL-----REKKFVLLLDDIWERV--NLNKVGVPLPSPQSTT 288 (911)
Q Consensus 216 ~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L-----~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~ 288 (911)
.+.. ...+++. .+.+.. .+++-++|+|++.... ....+...+. ....
T Consensus 95 ~~~~-----------------------~~vd~ir-~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LE--epp~ 148 (527)
T PRK14969 95 AASN-----------------------TQVDAMR-ELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLE--EPPE 148 (527)
T ss_pred cccc-----------------------CCHHHHH-HHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHh--CCCC
Confidence 1111 1122221 111111 3566799999997643 2333333333 2223
Q ss_pred CcEEEEEcCc-hhhhhc-cCCcceEEccCCCHHHHHHHHHHHhCCcccCCCccHHHHHHHHHHHhCCcch-HHHHHHhhh
Q 002538 289 ASKVVFTTRF-INVCGS-MEAHRNFKVECLTEKHAWELFQMKVGEETLKSHPHVFELAQVVAKECGGLPL-ALITIGRAM 365 (911)
Q Consensus 289 gs~IivTtR~-~~v~~~-~~~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~GlPL-ai~~~g~~l 365 (911)
.+.+|++|.+ ..+... .+....+++.+++.++....+.+.+...+. ..-.+....|++.++|.+- |+..+-.++
T Consensus 149 ~~~fIL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi---~~~~~al~~la~~s~Gslr~al~lldqai 225 (527)
T PRK14969 149 HVKFILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENI---PFDATALQLLARAAAGSMRDALSLLDQAI 225 (527)
T ss_pred CEEEEEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 5556655543 333321 122467899999999998888776643221 1123566888999999775 555544333
No 119
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.86 E-value=0.0002 Score=82.15 Aligned_cols=195 Identities=15% Similarity=0.149 Sum_probs=107.7
Q ss_pred cccchHHHHHHHHHHhccCC-ceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCccChHHHHHHHHHHcCC
Q 002538 157 IVKGLESTLEDVWRCLVEES-AGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDLQIEKNQEIIGKKIGL 235 (911)
Q Consensus 157 ~~~Gr~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 235 (911)
.|+|.+..++.+.+.+..++ ...+.++|+.|+||||+|+.+++... -....+.. .++.-..-+.|......
T Consensus 17 dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~-C~~~~~~~-------pCg~C~sC~~i~~g~hp 88 (624)
T PRK14959 17 EVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALN-CETAPTGE-------PCNTCEQCRKVTQGMHV 88 (624)
T ss_pred HhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhcc-ccCCCCCC-------CCcccHHHHHHhcCCCC
Confidence 46699988888888887765 46777899999999999999988762 11111000 00000000111100000
Q ss_pred CC---CccCCCCHHHHHHHHHHH-----hhcceEEEEEcccccc--cccccccCCCCCCCCCCCcEEEEEcCc-hhhhhc
Q 002538 236 FD---DSWKNKNLDERALEIFKI-----LREKKFVLLLDDIWER--VNLNKVGVPLPSPQSTTASKVVFTTRF-INVCGS 304 (911)
Q Consensus 236 ~~---~~~~~~~~~~~~~~l~~~-----L~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~gs~IivTtR~-~~v~~~ 304 (911)
.. +.......++.. .+.+. ..+++-++|+|++... .....+...+. .......+|++|.+ ..+...
T Consensus 89 Dv~eId~a~~~~Id~iR-~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LE--EP~~~~ifILaTt~~~kll~T 165 (624)
T PRK14959 89 DVVEIDGASNRGIDDAK-RLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLE--EPPARVTFVLATTEPHKFPVT 165 (624)
T ss_pred ceEEEecccccCHHHHH-HHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhh--ccCCCEEEEEecCChhhhhHH
Confidence 00 000011122211 12222 2356679999999764 22334433332 22234555555544 444322
Q ss_pred -cCCcceEEccCCCHHHHHHHHHHHhCCcccCCCccHHHHHHHHHHHhCCcc-hHHHHHHhhh
Q 002538 305 -MEAHRNFKVECLTEKHAWELFQMKVGEETLKSHPHVFELAQVVAKECGGLP-LALITIGRAM 365 (911)
Q Consensus 305 -~~~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~GlP-Lai~~~g~~l 365 (911)
.+....+++.+++.++....+.+.+...... --.+....|++.++|.+ .|+..+..++
T Consensus 166 I~SRcq~i~F~pLs~~eL~~~L~~il~~egi~---id~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 166 IVSRCQHFTFTRLSEAGLEAHLTKVLGREGVD---YDPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred HHhhhhccccCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 2234578999999999998888766433211 12467788899999965 6777776554
No 120
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.86 E-value=0.00019 Score=83.11 Aligned_cols=191 Identities=15% Similarity=0.121 Sum_probs=105.6
Q ss_pred cccchHHHHHHHHHHhccCCce-EEEEEcCCCChHHHHHHHHHhhhccCCCCCc--eEEEEEeCCccChHHHHHHHHHHc
Q 002538 157 IVKGLESTLEDVWRCLVEESAG-IIGLYGMGGVGKTTLLTRINNKFLESPSDFD--CVIWVVVSKDLQIEKNQEIIGKKI 233 (911)
Q Consensus 157 ~~~Gr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~--~~~wv~~s~~~~~~~~~~~i~~~l 233 (911)
.++|.+..++.+.+.+..++.. -+.++|..|+||||+|+.+++... -..... ...+-.+... .--+.|....
T Consensus 25 dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~-c~~~~~~~~~~~~~cg~c----~~C~~i~~g~ 99 (598)
T PRK09111 25 DLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALN-YEGPDGDGGPTIDLCGVG----EHCQAIMEGR 99 (598)
T ss_pred HhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhC-cCCccccCCCccccCccc----HHHHHHhcCC
Confidence 4679999999999999887655 688999999999999999988762 111110 0000000000 0001111111
Q ss_pred CCCC---CccCCCCHHHHHHHHHHHh-----hcceEEEEEccccccc--ccccccCCCCCCCCCCCcEEEE-EcCchhhh
Q 002538 234 GLFD---DSWKNKNLDERALEIFKIL-----REKKFVLLLDDIWERV--NLNKVGVPLPSPQSTTASKVVF-TTRFINVC 302 (911)
Q Consensus 234 ~~~~---~~~~~~~~~~~~~~l~~~L-----~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~gs~Iiv-TtR~~~v~ 302 (911)
.... +.......+++. .+.+.+ .+++-++|+|++.... ....+...+. ....++.+|+ ||....+.
T Consensus 100 h~Dv~e~~a~s~~gvd~IR-eIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLE--ePp~~~~fIl~tte~~kll 176 (598)
T PRK09111 100 HVDVLEMDAASHTGVDDIR-EIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLE--EPPPHVKFIFATTEIRKVP 176 (598)
T ss_pred CCceEEecccccCCHHHHH-HHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHH--hCCCCeEEEEEeCChhhhh
Confidence 0000 000111222222 122222 2455689999997543 2333333332 2233566655 44444443
Q ss_pred hcc-CCcceEEccCCCHHHHHHHHHHHhCCcccCCCccHHHHHHHHHHHhCCcchHH
Q 002538 303 GSM-EAHRNFKVECLTEKHAWELFQMKVGEETLKSHPHVFELAQVVAKECGGLPLAL 358 (911)
Q Consensus 303 ~~~-~~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~GlPLai 358 (911)
..+ +....+++.+++.++....+.+.+...... --.+....|++.++|.+.-+
T Consensus 177 ~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~---i~~eAl~lIa~~a~Gdlr~a 230 (598)
T PRK09111 177 VTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVE---VEDEALALIARAAEGSVRDG 230 (598)
T ss_pred HHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHH
Confidence 222 234678999999999998888876433311 12367788899999988644
No 121
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.86 E-value=0.00021 Score=79.33 Aligned_cols=170 Identities=18% Similarity=0.254 Sum_probs=96.1
Q ss_pred cccchHHHHHHHHHHhcc-------------CCceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCccChH
Q 002538 157 IVKGLESTLEDVWRCLVE-------------ESAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDLQIE 223 (911)
Q Consensus 157 ~~~Gr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 223 (911)
.+.|+++.++++.+.+.. ...+.|.++|++|+|||++|+++++.. ...| +.++. .
T Consensus 132 di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~---~~~~-----i~v~~----~ 199 (389)
T PRK03992 132 DIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET---NATF-----IRVVG----S 199 (389)
T ss_pred HhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHh---CCCE-----EEeeh----H
Confidence 467999999998887632 234568899999999999999999986 2222 22211 1
Q ss_pred HHHHHHHHHcCCCCCccCCCCHHHHHHHHHHHh-hcceEEEEEccccccc------------c----cccccCCCCCCCC
Q 002538 224 KNQEIIGKKIGLFDDSWKNKNLDERALEIFKIL-REKKFVLLLDDIWERV------------N----LNKVGVPLPSPQS 286 (911)
Q Consensus 224 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L-~~k~~LlVlDdv~~~~------------~----~~~~~~~l~~~~~ 286 (911)
.+. ... .. ........+.+.. ...+.+|+|||++... . +..+...+.....
T Consensus 200 ~l~----~~~-------~g-~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~ 267 (389)
T PRK03992 200 ELV----QKF-------IG-EGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDP 267 (389)
T ss_pred HHh----Hhh-------cc-chHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCC
Confidence 111 110 00 1112222333332 3456899999997531 0 0111111110012
Q ss_pred CCCcEEEEEcCchhhhh-cc----CCcceEEccCCCHHHHHHHHHHHhCCcccCCCccHHHHHHHHHHHhCCc
Q 002538 287 TTASKVVFTTRFINVCG-SM----EAHRNFKVECLTEKHAWELFQMKVGEETLKSHPHVFELAQVVAKECGGL 354 (911)
Q Consensus 287 ~~gs~IivTtR~~~v~~-~~----~~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~Gl 354 (911)
..+..||.||...+... .+ .-...+++.+.+.++-.++|+.++..........+ ..+++.+.|.
T Consensus 268 ~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~----~~la~~t~g~ 336 (389)
T PRK03992 268 RGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDL----EELAELTEGA 336 (389)
T ss_pred CCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCH----HHHHHHcCCC
Confidence 23567787877554322 11 12457899999999999999988754432222233 4455666664
No 122
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.82 E-value=0.00013 Score=82.20 Aligned_cols=167 Identities=13% Similarity=0.066 Sum_probs=100.6
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCccChHHHHHHHHHHcCCCCCccCCCCHHHHHHHHHHHh
Q 002538 177 AGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDLQIEKNQEIIGKKIGLFDDSWKNKNLDERALEIFKIL 256 (911)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L 256 (911)
...+.|+|..|+|||+|++++++... ....-..+++++ ..++...+...++... .....+.+.+
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~-~~~~~~~v~yv~------~~~f~~~~~~~l~~~~---------~~~~~~~~~~ 204 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIE-SNFSDLKVSYMS------GDEFARKAVDILQKTH---------KEIEQFKNEI 204 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHH-HhCCCCeEEEEE------HHHHHHHHHHHHHHhh---------hHHHHHHHHh
Confidence 35688999999999999999999752 112223445553 3455566665553210 1122333333
Q ss_pred hcceEEEEEccccccc---cc-ccccCCCCCCCCCCCcEEEEEcCchh---------hhhccCCcceEEccCCCHHHHHH
Q 002538 257 REKKFVLLLDDIWERV---NL-NKVGVPLPSPQSTTASKVVFTTRFIN---------VCGSMEAHRNFKVECLTEKHAWE 323 (911)
Q Consensus 257 ~~k~~LlVlDdv~~~~---~~-~~~~~~l~~~~~~~gs~IivTtR~~~---------v~~~~~~~~~~~l~~L~~~es~~ 323 (911)
+ +.-+||+||+.... .+ +.+...+.. ....|..||+|+.... +...+...-++.+++++.++-.+
T Consensus 205 ~-~~dvLiIDDiq~l~~k~~~~e~lf~l~N~-~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~ 282 (450)
T PRK14087 205 C-QNDVLIIDDVQFLSYKEKTNEIFFTIFNN-FIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATA 282 (450)
T ss_pred c-cCCEEEEeccccccCCHHHHHHHHHHHHH-HHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHH
Confidence 3 34488999996532 12 222222211 1133557888875432 22333445678899999999999
Q ss_pred HHHHHhCCcccCCCccHHHHHHHHHHHhCCcchHHHHHH
Q 002538 324 LFQMKVGEETLKSHPHVFELAQVVAKECGGLPLALITIG 362 (911)
Q Consensus 324 Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~g 362 (911)
++.+++...... ..--+++..-|++.++|.|-.+.-+.
T Consensus 283 iL~~~~~~~gl~-~~l~~evl~~Ia~~~~gd~R~L~gaL 320 (450)
T PRK14087 283 IIKKEIKNQNIK-QEVTEEAINFISNYYSDDVRKIKGSV 320 (450)
T ss_pred HHHHHHHhcCCC-CCCCHHHHHHHHHccCCCHHHHHHHH
Confidence 999988543211 12235788889999999987665444
No 123
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.81 E-value=0.00021 Score=86.79 Aligned_cols=178 Identities=12% Similarity=0.117 Sum_probs=99.1
Q ss_pred cccchHHHHHHHHHHhccCCceEEEEEcCCCChHHHHHHHHHhhhccC--C-CCCceEEE-EEeCCccChHHHHHHHHHH
Q 002538 157 IVKGLESTLEDVWRCLVEESAGIIGLYGMGGVGKTTLLTRINNKFLES--P-SDFDCVIW-VVVSKDLQIEKNQEIIGKK 232 (911)
Q Consensus 157 ~~~Gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~-~~f~~~~w-v~~s~~~~~~~~~~~i~~~ 232 (911)
.++||+.+++++++.|......-+.++|.+|+||||+|+.++++.... . .-.+..+| +..+. +.
T Consensus 188 ~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~----------l~-- 255 (852)
T TIGR03345 188 PVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGL----------LQ-- 255 (852)
T ss_pred cccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhh----------hh--
Confidence 467999999999999988766677799999999999999999986211 0 01123333 22211 00
Q ss_pred cCCCCCccCCCCHHHHHHHHHHHhh--cceEEEEEccccccc------cccc---ccCCCCCCCCCCC-cEEEEEcCchh
Q 002538 233 IGLFDDSWKNKNLDERALEIFKILR--EKKFVLLLDDIWERV------NLNK---VGVPLPSPQSTTA-SKVVFTTRFIN 300 (911)
Q Consensus 233 l~~~~~~~~~~~~~~~~~~l~~~L~--~k~~LlVlDdv~~~~------~~~~---~~~~l~~~~~~~g-s~IivTtR~~~ 300 (911)
... ......+.....+.+.+. +++.+|++|++.... .-.+ +..+.. ..| -++|-||...+
T Consensus 256 --ag~--~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l----~~G~l~~IgaTT~~e 327 (852)
T TIGR03345 256 --AGA--SVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPAL----ARGELRTIAATTWAE 327 (852)
T ss_pred --ccc--ccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHh----hCCCeEEEEecCHHH
Confidence 000 011222233333333332 468999999997542 1111 222222 223 45665555432
Q ss_pred hhhcc-------CCcceEEccCCCHHHHHHHHHHHhCCccc-CCCccHHHHHHHHHHHhCCc
Q 002538 301 VCGSM-------EAHRNFKVECLTEKHAWELFQMKVGEETL-KSHPHVFELAQVVAKECGGL 354 (911)
Q Consensus 301 v~~~~-------~~~~~~~l~~L~~~es~~Lf~~~a~~~~~-~~~~~~~~~~~~i~~~c~Gl 354 (911)
....+ .....+.+.+++.+++.++++.....-.. ....--.+....+++.+.+.
T Consensus 328 ~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ry 389 (852)
T TIGR03345 328 YKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRY 389 (852)
T ss_pred HhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccc
Confidence 21111 12358999999999999997554322110 11112245556666666553
No 124
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.80 E-value=3e-05 Score=73.57 Aligned_cols=101 Identities=24% Similarity=0.411 Sum_probs=74.7
Q ss_pred cceEEEeecCCcccCCCCCCCCCccEEEcccCcccccChhhhccCCCCcEEEccCCCCcccC--ccccCcCCCCEEeccC
Q 002538 518 KVKRLLLMKNHIKHLPDIPTCPHLLTLFLSHNQLRWISEDFFQFMPSLKVLNLSFTKRHKFP--SGISKLASLQLIDLSY 595 (911)
Q Consensus 518 ~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~lp--~~i~~l~~L~~L~L~~ 595 (911)
....+++.+|++..++.++.++.|.+|.+.+|.++.+.+..-..+++|..|.|.+|++..+. ..+..|+.|++|.+-+
T Consensus 43 ~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~ 122 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLG 122 (233)
T ss_pred ccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecC
Confidence 45567888888888888888888888888888888888776666778888888888877663 3456677888888877
Q ss_pred CCcCCcch----hhhccCcCcEEecCC
Q 002538 596 TSIRGLPE----ELKALINLKCLNLDQ 618 (911)
Q Consensus 596 ~~i~~lp~----~l~~L~~L~~L~L~~ 618 (911)
|.++..+. -+.++++|+.||..+
T Consensus 123 Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 123 NPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred CchhcccCceeEEEEecCcceEeehhh
Confidence 76665432 256667777777655
No 125
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.80 E-value=0.0003 Score=84.27 Aligned_cols=180 Identities=15% Similarity=0.153 Sum_probs=106.4
Q ss_pred ccccchHHHHHHHHHHhccCCce-EEEEEcCCCChHHHHHHHHHhhhccCCC---------------------CCceEEE
Q 002538 156 AIVKGLESTLEDVWRCLVEESAG-IIGLYGMGGVGKTTLLTRINNKFLESPS---------------------DFDCVIW 213 (911)
Q Consensus 156 ~~~~Gr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~---------------------~f~~~~w 213 (911)
..|+|.+..++.|.+.+..+++. .+.++|..|+||||+|+.+.+...-... +++ +++
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~d-v~e 93 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSLD-VTE 93 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCCc-EEE
Confidence 34679999999999999887665 4789999999999999999888621110 111 111
Q ss_pred EEeCCccChHHHHHHHHHHcCCCCCccCCCCHHHHHHHHHHH-----hhcceEEEEEccccccc--ccccccCCCCCCCC
Q 002538 214 VVVSKDLQIEKNQEIIGKKIGLFDDSWKNKNLDERALEIFKI-----LREKKFVLLLDDIWERV--NLNKVGVPLPSPQS 286 (911)
Q Consensus 214 v~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~-----L~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~ 286 (911)
+.... ....+++.. +.+. ..++.-++|||+++... ....+...+. ..
T Consensus 94 idaas-----------------------~~~Vd~iR~-l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LE--Ep 147 (824)
T PRK07764 94 IDAAS-----------------------HGGVDDARE-LRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVE--EP 147 (824)
T ss_pred ecccc-----------------------cCCHHHHHH-HHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHh--CC
Confidence 21111 112222221 2211 23555688999997642 2333333333 22
Q ss_pred CCCcEEEE-EcCchhhhhc-cCCcceEEccCCCHHHHHHHHHHHhCCcccCCCccHHHHHHHHHHHhCCcch-HHHHHHh
Q 002538 287 TTASKVVF-TTRFINVCGS-MEAHRNFKVECLTEKHAWELFQMKVGEETLKSHPHVFELAQVVAKECGGLPL-ALITIGR 363 (911)
Q Consensus 287 ~~gs~Iiv-TtR~~~v~~~-~~~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~GlPL-ai~~~g~ 363 (911)
...+.+|+ ||....+... -+....|++.+++.++..+.+.+.+...... .-.+....|++.++|.+. ++..+-.
T Consensus 148 P~~~~fIl~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~---id~eal~lLa~~sgGdlR~Al~eLEK 224 (824)
T PRK07764 148 PEHLKFIFATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVP---VEPGVLPLVIRAGGGSVRDSLSVLDQ 224 (824)
T ss_pred CCCeEEEEEeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 33555555 4444444432 2345688999999999888887765333211 123556788999999874 4444444
Q ss_pred hh
Q 002538 364 AM 365 (911)
Q Consensus 364 ~l 365 (911)
++
T Consensus 225 Li 226 (824)
T PRK07764 225 LL 226 (824)
T ss_pred HH
Confidence 33
No 126
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.79 E-value=0.00041 Score=79.85 Aligned_cols=198 Identities=14% Similarity=0.076 Sum_probs=107.5
Q ss_pred ccccchHHHHHHHHHHhccCCceE-EEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCccChHHHHHHHHHHcC
Q 002538 156 AIVKGLESTLEDVWRCLVEESAGI-IGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDLQIEKNQEIIGKKIG 234 (911)
Q Consensus 156 ~~~~Gr~~~~~~l~~~L~~~~~~v-i~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 234 (911)
..++|.+..++.+.+++..+++.. +.++|+.|+||||+|+.+++...- ....+. -.++... .-+.|...-+
T Consensus 13 ~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c-~~~~~~---~pCg~C~----~C~~i~~~~~ 84 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNC-AQGPTA---TPCGVCE----SCVALAPNGP 84 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcc-ccCCCC---CcccccH----HHHHhhcccC
Confidence 346799999999999998877664 689999999999999999987621 111100 0000000 0000100000
Q ss_pred CCC-----CccCCCCHHHH---HHHHHHH-hhcceEEEEEcccccc--cccccccCCCCCCCCCCCcEEE-EEcCchhhh
Q 002538 235 LFD-----DSWKNKNLDER---ALEIFKI-LREKKFVLLLDDIWER--VNLNKVGVPLPSPQSTTASKVV-FTTRFINVC 302 (911)
Q Consensus 235 ~~~-----~~~~~~~~~~~---~~~l~~~-L~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~gs~Ii-vTtR~~~v~ 302 (911)
... +.......++. ...+... ..+++-++|+|++... .....+...+. .......+| +||....+.
T Consensus 85 ~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LE--Epp~~~~fIL~tte~~kll 162 (584)
T PRK14952 85 GSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVE--EPPEHLIFIFATTEPEKVL 162 (584)
T ss_pred CCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHh--cCCCCeEEEEEeCChHhhH
Confidence 000 00001112222 1222111 1345668999999753 23333333333 222345445 455544443
Q ss_pred hc-cCCcceEEccCCCHHHHHHHHHHHhCCcccCCCccHHHHHHHHHHHhCCcch-HHHHHHhhhc
Q 002538 303 GS-MEAHRNFKVECLTEKHAWELFQMKVGEETLKSHPHVFELAQVVAKECGGLPL-ALITIGRAMA 366 (911)
Q Consensus 303 ~~-~~~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~GlPL-ai~~~g~~l~ 366 (911)
.. .+....+++.+++.++..+.+.+.+...+.. --.+....|++.++|.+- |+..+-.++.
T Consensus 163 ~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~---i~~~al~~Ia~~s~GdlR~aln~Ldql~~ 225 (584)
T PRK14952 163 PTIRSRTHHYPFRLLPPRTMRALIARICEQEGVV---VDDAVYPLVIRAGGGSPRDTLSVLDQLLA 225 (584)
T ss_pred HHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 32 2335689999999999888887765433211 123566778999999774 6666655444
No 127
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.78 E-value=0.00012 Score=74.12 Aligned_cols=187 Identities=14% Similarity=0.173 Sum_probs=112.9
Q ss_pred cccchHHHHHHHHHHhccCCceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceE-EEEEeCCccChHHHHHHHHHHcCC
Q 002538 157 IVKGLESTLEDVWRCLVEESAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCV-IWVVVSKDLQIEKNQEIIGKKIGL 235 (911)
Q Consensus 157 ~~~Gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~-~wv~~s~~~~~~~~~~~i~~~l~~ 235 (911)
.+.|.+..+.-+.+.+.....++...+|++|.|||+-|+.++... --.+-|.++ +-.++|..-.+.-+-..+-
T Consensus 37 e~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L-~~~~~~~~rvl~lnaSderGisvvr~Kik----- 110 (346)
T KOG0989|consen 37 ELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARAL-NCEQLFPCRVLELNASDERGISVVREKIK----- 110 (346)
T ss_pred hhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHh-cCccccccchhhhcccccccccchhhhhc-----
Confidence 466999999999999988888999999999999999999988876 223445433 3344544433321111111
Q ss_pred CCCccCCCCHHHHHHHHHHHhh---cce-EEEEEcccccc--cccccccCCCCCCCCCCCcEEEEEcCchhhh-hc-cCC
Q 002538 236 FDDSWKNKNLDERALEIFKILR---EKK-FVLLLDDIWER--VNLNKVGVPLPSPQSTTASKVVFTTRFINVC-GS-MEA 307 (911)
Q Consensus 236 ~~~~~~~~~~~~~~~~l~~~L~---~k~-~LlVlDdv~~~--~~~~~~~~~l~~~~~~~gs~IivTtR~~~v~-~~-~~~ 307 (911)
+...+..... ... -++ -.+|||+++.. +.|..+..... +....++.|+.+-+.... .- .+.
T Consensus 111 --------~fakl~~~~~-~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE--~~s~~trFiLIcnylsrii~pi~SR 179 (346)
T KOG0989|consen 111 --------NFAKLTVLLK-RSDGYPCPPFKIIILDECDSMTSDAQAALRRTME--DFSRTTRFILICNYLSRIIRPLVSR 179 (346)
T ss_pred --------CHHHHhhccc-cccCCCCCcceEEEEechhhhhHHHHHHHHHHHh--ccccceEEEEEcCChhhCChHHHhh
Confidence 0000000000 000 123 37899999864 55776655544 334455555444333321 11 122
Q ss_pred cceEEccCCCHHHHHHHHHHHhCCcccCCCccHHHHHHHHHHHhCCc-chHHHHHHh
Q 002538 308 HRNFKVECLTEKHAWELFQMKVGEETLKSHPHVFELAQVVAKECGGL-PLALITIGR 363 (911)
Q Consensus 308 ~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~Gl-PLai~~~g~ 363 (911)
..-|..++|..++...-++..+..++... -.+..+.|++.++|- --|+.++-+
T Consensus 180 C~KfrFk~L~d~~iv~rL~~Ia~~E~v~~---d~~al~~I~~~S~GdLR~Ait~Lqs 233 (346)
T KOG0989|consen 180 CQKFRFKKLKDEDIVDRLEKIASKEGVDI---DDDALKLIAKISDGDLRRAITTLQS 233 (346)
T ss_pred HHHhcCCCcchHHHHHHHHHHHHHhCCCC---CHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 34688999999999988888876554322 246778899999884 445555543
No 128
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.78 E-value=0.00016 Score=79.22 Aligned_cols=106 Identities=22% Similarity=0.150 Sum_probs=70.3
Q ss_pred ccchHHHHHHHHHHhccCCceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCccChHHHHHHHHHHcCCCC
Q 002538 158 VKGLESTLEDVWRCLVEESAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDLQIEKNQEIIGKKIGLFD 237 (911)
Q Consensus 158 ~~Gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~ 237 (911)
+++.+...+.+...|.. .+.|.++|++|+|||++|+.+++.. .....|+.+.||++++..+..+....+.- ..
T Consensus 177 ~~i~e~~le~l~~~L~~--~~~iil~GppGtGKT~lA~~la~~l-~~~~~~~~v~~VtFHpsySYeDFI~G~rP----~~ 249 (459)
T PRK11331 177 LFIPETTIETILKRLTI--KKNIILQGPPGVGKTFVARRLAYLL-TGEKAPQRVNMVQFHQSYSYEDFIQGYRP----NG 249 (459)
T ss_pred ccCCHHHHHHHHHHHhc--CCCEEEECCCCCCHHHHHHHHHHHh-cCCcccceeeEEeecccccHHHHhcccCC----CC
Confidence 55888899999988864 4577789999999999999999987 44567889999999998887765542211 00
Q ss_pred CccCCCCHHHHHHHHHHHh--hcceEEEEEcccccc
Q 002538 238 DSWKNKNLDERALEIFKIL--REKKFVLLLDDIWER 271 (911)
Q Consensus 238 ~~~~~~~~~~~~~~l~~~L--~~k~~LlVlDdv~~~ 271 (911)
......+ ....+.+...- .+++++||+|++...
T Consensus 250 vgy~~~~-G~f~~~~~~A~~~p~~~~vliIDEINRa 284 (459)
T PRK11331 250 VGFRRKD-GIFYNFCQQAKEQPEKKYVFIIDEINRA 284 (459)
T ss_pred CCeEecC-chHHHHHHHHHhcccCCcEEEEehhhcc
Confidence 0000000 01111112221 246899999999653
No 129
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.77 E-value=3.2e-05 Score=55.45 Aligned_cols=41 Identities=39% Similarity=0.545 Sum_probs=33.6
Q ss_pred CCCCEEeccCCCcCCcchhhhccCcCcEEecCCCccccccCh
Q 002538 586 ASLQLIDLSYTSIRGLPEELKALINLKCLNLDQTKFLVTIPR 627 (911)
Q Consensus 586 ~~L~~L~L~~~~i~~lp~~l~~L~~L~~L~L~~~~~l~~lp~ 627 (911)
++|++|++++|+|+++|..+++|++|+.|++++|+ +..+|.
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~-i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNP-ISDISP 41 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC-CSBEGG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCC-CCCCcC
Confidence 47899999999999999889999999999999997 566654
No 130
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.77 E-value=0.00049 Score=79.86 Aligned_cols=202 Identities=16% Similarity=0.148 Sum_probs=106.6
Q ss_pred ccccchHHHHHHHHHHhccCCce-EEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEE-eCCccChHHHHHHHHHHc
Q 002538 156 AIVKGLESTLEDVWRCLVEESAG-IIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVV-VSKDLQIEKNQEIIGKKI 233 (911)
Q Consensus 156 ~~~~Gr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~-~s~~~~~~~~~~~i~~~l 233 (911)
..++|.+..++.+.+.+..+++. .+.++|+.|+||||+|+.+++... -....+.-.|.. +...++.-..-+.+...-
T Consensus 16 ~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~-c~~~~~~~~~~~~~~~~Cg~C~sC~~~~~g~ 94 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVN-CQRMIDDPVYLQEVTEPCGECESCRDFDAGT 94 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhC-CCCcCCccccccccCCCCccCHHHHHHhccC
Confidence 34669999999999988877665 488999999999999999988762 111111001110 000000000001111000
Q ss_pred CCCC---CccCCCCHHHHHHHHHHH----hhcceEEEEEccccccc--ccccccCCCCCCCCCCCcEEEE-EcCchhhhh
Q 002538 234 GLFD---DSWKNKNLDERALEIFKI----LREKKFVLLLDDIWERV--NLNKVGVPLPSPQSTTASKVVF-TTRFINVCG 303 (911)
Q Consensus 234 ~~~~---~~~~~~~~~~~~~~l~~~----L~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~gs~Iiv-TtR~~~v~~ 303 (911)
...- +.......+++...+... ..+++-++|+||++... ....+...+. .....+.+|+ |++...+..
T Consensus 95 ~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LE--ePp~~tv~IL~t~~~~kLl~ 172 (620)
T PRK14954 95 SLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLE--EPPPHAIFIFATTELHKIPA 172 (620)
T ss_pred CCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHh--CCCCCeEEEEEeCChhhhhH
Confidence 0000 000111123333222111 23455688999997643 2333433333 2223455554 544444432
Q ss_pred c-cCCcceEEccCCCHHHHHHHHHHHhCCcccCCCccHHHHHHHHHHHhCCcch-HHHHHHh
Q 002538 304 S-MEAHRNFKVECLTEKHAWELFQMKVGEETLKSHPHVFELAQVVAKECGGLPL-ALITIGR 363 (911)
Q Consensus 304 ~-~~~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~GlPL-ai~~~g~ 363 (911)
. ......+++.+++.++....+.+.+...... --.+.+..|++.++|..- |+..+-.
T Consensus 173 TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~---I~~eal~~La~~s~Gdlr~al~eLeK 231 (620)
T PRK14954 173 TIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQ---IDADALQLIARKAQGSMRDAQSILDQ 231 (620)
T ss_pred HHHhhceEEecCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 2 2345689999999999887777655432211 124677889999999554 5554443
No 131
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.76 E-value=0.00055 Score=77.61 Aligned_cols=174 Identities=13% Similarity=0.126 Sum_probs=103.0
Q ss_pred cccchHHHHHHHHHHhccCCce-EEEEEcCCCChHHHHHHHHHhhhccCC-CC----------------Cc-eEEEEEeC
Q 002538 157 IVKGLESTLEDVWRCLVEESAG-IIGLYGMGGVGKTTLLTRINNKFLESP-SD----------------FD-CVIWVVVS 217 (911)
Q Consensus 157 ~~~Gr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~-~~----------------f~-~~~wv~~s 217 (911)
.++|-+..++.+...+..++.+ ++-++|..|+||||+|+.+++...-.. .. +. .++.+..+
T Consensus 15 eiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~eldaa 94 (535)
T PRK08451 15 ELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDIIEMDAA 94 (535)
T ss_pred HccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEEEeccc
Confidence 4679999999999999877666 568999999999999999887751100 00 00 01111111
Q ss_pred CccChHHHHHHHHHHcCCCCCccCCCCHHHHHHHHHHH----hhcceEEEEEccccccc--ccccccCCCCCCCCCCCcE
Q 002538 218 KDLQIEKNQEIIGKKIGLFDDSWKNKNLDERALEIFKI----LREKKFVLLLDDIWERV--NLNKVGVPLPSPQSTTASK 291 (911)
Q Consensus 218 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~----L~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~gs~ 291 (911)
.. ...+++...+... ..+++-++|+|++.... ....+...+. .....++
T Consensus 95 s~-----------------------~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LE--Epp~~t~ 149 (535)
T PRK08451 95 SN-----------------------RGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLE--EPPSYVK 149 (535)
T ss_pred cc-----------------------cCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHh--hcCCceE
Confidence 11 1122222222110 12456689999997542 2333333332 2234566
Q ss_pred EEEEcCchh-hhh-ccCCcceEEccCCCHHHHHHHHHHHhCCcccCCCccHHHHHHHHHHHhCCcchHH
Q 002538 292 VVFTTRFIN-VCG-SMEAHRNFKVECLTEKHAWELFQMKVGEETLKSHPHVFELAQVVAKECGGLPLAL 358 (911)
Q Consensus 292 IivTtR~~~-v~~-~~~~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~GlPLai 358 (911)
+|++|.+.. +.. ..+....+++.+++.++....+.+.+...+. .--.+....|++.++|.+--+
T Consensus 150 FIL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi---~i~~~Al~~Ia~~s~GdlR~a 215 (535)
T PRK08451 150 FILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGV---SYEPEALEILARSGNGSLRDT 215 (535)
T ss_pred EEEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCcHHHH
Confidence 666665532 221 1223468899999999998888776643321 112467788999999988543
No 132
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.76 E-value=0.00047 Score=80.46 Aligned_cols=183 Identities=14% Similarity=0.130 Sum_probs=107.6
Q ss_pred ccccchHHHHHHHHHHhccCCce-EEEEEcCCCChHHHHHHHHHhhhcc--------------------CCCCCceEEEE
Q 002538 156 AIVKGLESTLEDVWRCLVEESAG-IIGLYGMGGVGKTTLLTRINNKFLE--------------------SPSDFDCVIWV 214 (911)
Q Consensus 156 ~~~~Gr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~--------------------~~~~f~~~~wv 214 (911)
+.|+|.+..++.+.+++..+... .+.++|..|+||||+|+.+.....- ...+|+. ..+
T Consensus 17 ~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~-~~l 95 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNI-HEL 95 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCce-EEe
Confidence 34679999999999999887665 4789999999999999998886520 0112332 222
Q ss_pred EeCCccChHHHHHHHHHHcCCCCCccCCCCHHHHHHHHHHHhhcceEEEEEccccccc--ccccccCCCCCCCCCCCcEE
Q 002538 215 VVSKDLQIEKNQEIIGKKIGLFDDSWKNKNLDERALEIFKILREKKFVLLLDDIWERV--NLNKVGVPLPSPQSTTASKV 292 (911)
Q Consensus 215 ~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~gs~I 292 (911)
..+......++.. +++++... -..+++=++|+|++.... .+..+...+. ....++.+
T Consensus 96 d~~~~~~vd~Ir~-li~~~~~~------------------P~~~~~KVvIIdea~~Ls~~a~naLLK~LE--epp~~tif 154 (614)
T PRK14971 96 DAASNNSVDDIRN-LIEQVRIP------------------PQIGKYKIYIIDEVHMLSQAAFNAFLKTLE--EPPSYAIF 154 (614)
T ss_pred cccccCCHHHHHH-HHHHHhhC------------------cccCCcEEEEEECcccCCHHHHHHHHHHHh--CCCCCeEE
Confidence 2221111222211 11111110 012445588999987642 3444444333 22235555
Q ss_pred EE-EcCchhhhhc-cCCcceEEccCCCHHHHHHHHHHHhCCcccCCCccHHHHHHHHHHHhCCcch-HHHHHHh
Q 002538 293 VF-TTRFINVCGS-MEAHRNFKVECLTEKHAWELFQMKVGEETLKSHPHVFELAQVVAKECGGLPL-ALITIGR 363 (911)
Q Consensus 293 iv-TtR~~~v~~~-~~~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~GlPL-ai~~~g~ 363 (911)
|+ ||+...+... .+....+++.+++.++....+.+.+...+.. .-.+.+..|++.++|..- |+..+-.
T Consensus 155 IL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~---i~~~al~~La~~s~gdlr~al~~Lek 225 (614)
T PRK14971 155 ILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGIT---AEPEALNVIAQKADGGMRDALSIFDQ 225 (614)
T ss_pred EEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 54 5555555433 2345678999999999998888766443311 123567889999999664 4444433
No 133
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.74 E-value=0.0002 Score=74.76 Aligned_cols=168 Identities=15% Similarity=0.154 Sum_probs=104.3
Q ss_pred cccccchHHHHHHHHHHhccCC---ceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCccChHHHHHHHHH
Q 002538 155 EAIVKGLESTLEDVWRCLVEES---AGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDLQIEKNQEIIGK 231 (911)
Q Consensus 155 ~~~~~Gr~~~~~~l~~~L~~~~---~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 231 (911)
.+.|.+|+.++..+..++.+.. ...|.|+|-.|.|||.+.+++.+.. . ...+|+++-..++...+++.|+.
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~---n---~~~vw~n~~ecft~~~lle~IL~ 78 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKL---N---LENVWLNCVECFTYAILLEKILN 78 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhc---C---CcceeeehHHhccHHHHHHHHHH
Confidence 3456799999999999997642 3456899999999999999999886 1 23689999999999999999999
Q ss_pred HcCCCCCc-c-CCCCHH---HHHHHHHH--Hhh--cceEEEEEcccccccccccccCC----CCCCCCCCCcEEEEEcCc
Q 002538 232 KIGLFDDS-W-KNKNLD---ERALEIFK--ILR--EKKFVLLLDDIWERVNLNKVGVP----LPSPQSTTASKVVFTTRF 298 (911)
Q Consensus 232 ~l~~~~~~-~-~~~~~~---~~~~~l~~--~L~--~k~~LlVlDdv~~~~~~~~~~~~----l~~~~~~~gs~IivTtR~ 298 (911)
+......+ . ...+.+ .....+.+ ..+ ++.++||||+++...+.+.+..+ +......+...|+...-.
T Consensus 79 ~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils~~~ 158 (438)
T KOG2543|consen 79 KSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILSAPS 158 (438)
T ss_pred HhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEeccc
Confidence 98632211 1 111112 22222333 122 45899999999876554332111 000011223333332221
Q ss_pred -hhh-hhccCCcc--eEEccCCCHHHHHHHHHHH
Q 002538 299 -INV-CGSMEAHR--NFKVECLTEKHAWELFQMK 328 (911)
Q Consensus 299 -~~v-~~~~~~~~--~~~l~~L~~~es~~Lf~~~ 328 (911)
+.. ...+++.. ++....-+.+|..+++.+.
T Consensus 159 ~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 159 CEKQYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred cHHHhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 111 22234443 4466778889988888663
No 134
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.74 E-value=0.0002 Score=79.42 Aligned_cols=170 Identities=19% Similarity=0.226 Sum_probs=94.8
Q ss_pred cccchHHHHHHHHHHhcc-------------CCceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCccChH
Q 002538 157 IVKGLESTLEDVWRCLVE-------------ESAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDLQIE 223 (911)
Q Consensus 157 ~~~Gr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 223 (911)
.|.|.+..++++.+.+.- ...+.+.++|.+|+|||++|+++++.. ...| +.+..+.
T Consensus 184 DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el---~~~f---i~V~~se----- 252 (438)
T PTZ00361 184 DIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANET---SATF---LRVVGSE----- 252 (438)
T ss_pred HhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhh---CCCE---EEEecch-----
Confidence 366999999888777631 134568899999999999999999986 3334 1221111
Q ss_pred HHHHHHHHHcCCCCCccCCCCHHHHHHHHHH-HhhcceEEEEEcccccccc----------------cccccCCCCCCCC
Q 002538 224 KNQEIIGKKIGLFDDSWKNKNLDERALEIFK-ILREKKFVLLLDDIWERVN----------------LNKVGVPLPSPQS 286 (911)
Q Consensus 224 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~L~~k~~LlVlDdv~~~~~----------------~~~~~~~l~~~~~ 286 (911)
+... . .... ......+.. ...+.+.+|+||+++.... +..+...+.....
T Consensus 253 -L~~k----~-------~Ge~-~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~ 319 (438)
T PTZ00361 253 -LIQK----Y-------LGDG-PKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDS 319 (438)
T ss_pred -hhhh----h-------cchH-HHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcc
Confidence 1110 0 0111 112222222 2245678999999864210 0011111110012
Q ss_pred CCCcEEEEEcCchhhhhc-c----CCcceEEccCCCHHHHHHHHHHHhCCcccCCCccHHHHHHHHHHHhCCc
Q 002538 287 TTASKVVFTTRFINVCGS-M----EAHRNFKVECLTEKHAWELFQMKVGEETLKSHPHVFELAQVVAKECGGL 354 (911)
Q Consensus 287 ~~gs~IivTtR~~~v~~~-~----~~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~Gl 354 (911)
..+.+||+||...+.... + .....+++...+.++-.++|..++..........+. .++..+.|+
T Consensus 320 ~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~----~la~~t~g~ 388 (438)
T PTZ00361 320 RGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLE----EFIMAKDEL 388 (438)
T ss_pred cCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCHH----HHHHhcCCC
Confidence 335678888876555322 1 124578999999999999999877544322223343 344455443
No 135
>PF14516 AAA_35: AAA-like domain
Probab=97.73 E-value=0.0057 Score=66.35 Aligned_cols=199 Identities=14% Similarity=0.140 Sum_probs=117.3
Q ss_pred cccchHHHHHHHHHHhccCCceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCc-----cChHHHHH----
Q 002538 157 IVKGLESTLEDVWRCLVEESAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKD-----LQIEKNQE---- 227 (911)
Q Consensus 157 ~~~Gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~-----~~~~~~~~---- 227 (911)
..+.|...-+++.+.+.+. ...+.|.|+-.+|||+|...+.+.. + +..+ .++++..... .+....++
T Consensus 12 ~Yi~R~~~e~~~~~~i~~~-G~~~~I~apRq~GKTSll~~l~~~l-~-~~~~-~~v~id~~~~~~~~~~~~~~f~~~~~~ 87 (331)
T PF14516_consen 12 FYIERPPAEQECYQEIVQP-GSYIRIKAPRQMGKTSLLLRLLERL-Q-QQGY-RCVYIDLQQLGSAIFSDLEQFLRWFCE 87 (331)
T ss_pred cccCchHHHHHHHHHHhcC-CCEEEEECcccCCHHHHHHHHHHHH-H-HCCC-EEEEEEeecCCCcccCCHHHHHHHHHH
Confidence 3458886777777777653 4688899999999999999998887 2 2333 4557766542 23454444
Q ss_pred HHHHHcCCCCCc---c--CCCCHHHHHHHHHHHh-h--cceEEEEEcccccccc--------------cccccCCCCCCC
Q 002538 228 IIGKKIGLFDDS---W--KNKNLDERALEIFKIL-R--EKKFVLLLDDIWERVN--------------LNKVGVPLPSPQ 285 (911)
Q Consensus 228 ~i~~~l~~~~~~---~--~~~~~~~~~~~l~~~L-~--~k~~LlVlDdv~~~~~--------------~~~~~~~l~~~~ 285 (911)
.+.+++++...- + ...........+.+.+ . +++.+|+||+|+..-. |..-....+ .
T Consensus 88 ~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~--~ 165 (331)
T PF14516_consen 88 EISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNP--I 165 (331)
T ss_pred HHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCc--c
Confidence 444555543210 0 0112223333344432 2 5899999999975421 211111101 0
Q ss_pred CCCCcEEEEEcCchhhhhc-----cCCcceEEccCCCHHHHHHHHHHHhCCcccCCCccHHHHHHHHHHHhCCcchHHHH
Q 002538 286 STTASKVVFTTRFINVCGS-----MEAHRNFKVECLTEKHAWELFQMKVGEETLKSHPHVFELAQVVAKECGGLPLALIT 360 (911)
Q Consensus 286 ~~~gs~IivTtR~~~v~~~-----~~~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~ 360 (911)
-..-+-|++.+........ ......++|.+++.+|...|..+.-..-. .+..++|...+||+|.-+..
T Consensus 166 ~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~~~-------~~~~~~l~~~tgGhP~Lv~~ 238 (331)
T PF14516_consen 166 WQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLEFS-------QEQLEQLMDWTGGHPYLVQK 238 (331)
T ss_pred cceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhccCC-------HHHHHHHHHHHCCCHHHHHH
Confidence 0011112222211111111 12345789999999999999987632211 23388999999999999999
Q ss_pred HHhhhccC
Q 002538 361 IGRAMAYK 368 (911)
Q Consensus 361 ~g~~l~~~ 368 (911)
++..+..+
T Consensus 239 ~~~~l~~~ 246 (331)
T PF14516_consen 239 ACYLLVEE 246 (331)
T ss_pred HHHHHHHc
Confidence 99998753
No 136
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.73 E-value=1e-05 Score=94.97 Aligned_cols=136 Identities=21% Similarity=0.169 Sum_probs=76.8
Q ss_pred CCccEEEcccCc--ccccChhhhccCCCCcEEEccCCCCc--ccCccccCcCCCCEEeccCCCcCCcchhhhccCcCcEE
Q 002538 539 PHLLTLFLSHNQ--LRWISEDFFQFMPSLKVLNLSFTKRH--KFPSGISKLASLQLIDLSYTSIRGLPEELKALINLKCL 614 (911)
Q Consensus 539 ~~L~~L~l~~~~--l~~~~~~~~~~l~~L~~L~L~~~~~~--~lp~~i~~l~~L~~L~L~~~~i~~lp~~l~~L~~L~~L 614 (911)
.+|+.|+++|.. .++.+...-..+|.|+.|.+++-.+. .+..-..++++|..||+|+|+++.+ .++++|+||+.|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence 567777777762 22333444455777787777775442 2233345677777778887777777 677777777777
Q ss_pred ecCCCccccccChhhhccCccCcEEEecCCCCCcccccCCCcccccCcccchhhhcCCCCCcEEEEEecC
Q 002538 615 NLDQTKFLVTIPRHLISSFSMLHVLRMFGSGSSVFHEASGDSILFDGGELLADELLGLKYLEVLDITLRS 684 (911)
Q Consensus 615 ~L~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~ 684 (911)
.+.+-.+.....-..+-+|++|++|+++.........+ .....+.-..|++|+.|+.++..
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~i---------i~qYlec~~~LpeLrfLDcSgTd 261 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKI---------IEQYLECGMVLPELRFLDCSGTD 261 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeeccccccccchHH---------HHHHHHhcccCccccEEecCCcc
Confidence 77654422111101145677777777776554311000 01112233446677777766443
No 137
>PRK06620 hypothetical protein; Validated
Probab=97.72 E-value=0.00027 Score=71.16 Aligned_cols=153 Identities=10% Similarity=0.026 Sum_probs=86.0
Q ss_pred cccccch-HHH-HHHHHHHhccC--Cc--eEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCccChHHHHHH
Q 002538 155 EAIVKGL-EST-LEDVWRCLVEE--SA--GIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDLQIEKNQEI 228 (911)
Q Consensus 155 ~~~~~Gr-~~~-~~~l~~~L~~~--~~--~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 228 (911)
+..|+|. ... ...+.++-... +. +.+.|+|++|+|||+|++.+++.. .. .++. ....
T Consensus 16 d~Fvvg~~N~~a~~~~~~~~~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~---~~-----~~~~--~~~~------- 78 (214)
T PRK06620 16 DEFIVSSSNDQAYNIIKNWQCGFGVNPYKFTLLIKGPSSSGKTYLTKIWQNLS---NA-----YIIK--DIFF------- 78 (214)
T ss_pred hhhEecccHHHHHHHHHHHHHccccCCCcceEEEECCCCCCHHHHHHHHHhcc---CC-----EEcc--hhhh-------
Confidence 4567776 332 33333333211 12 568999999999999999987765 11 1111 0000
Q ss_pred HHHHcCCCCCccCCCCHHHHHHHHHHHhhcceEEEEEcccccccc--cccccCCCCCCCCCCCcEEEEEcCchhh-----
Q 002538 229 IGKKIGLFDDSWKNKNLDERALEIFKILREKKFVLLLDDIWERVN--LNKVGVPLPSPQSTTASKVVFTTRFINV----- 301 (911)
Q Consensus 229 i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~~--~~~~~~~l~~~~~~~gs~IivTtR~~~v----- 301 (911)
. + +.. +..-++++||+....+ +-.+...+. ..|..||+|++....
T Consensus 79 ---------------~-~-------~~~-~~~d~lliDdi~~~~~~~lf~l~N~~~----e~g~~ilits~~~p~~l~l~ 130 (214)
T PRK06620 79 ---------------N-E-------EIL-EKYNAFIIEDIENWQEPALLHIFNIIN----EKQKYLLLTSSDKSRNFTLP 130 (214)
T ss_pred ---------------c-h-------hHH-hcCCEEEEeccccchHHHHHHHHHHHH----hcCCEEEEEcCCCccccchH
Confidence 0 0 011 1234788999963321 111111111 346789999875443
Q ss_pred --hhccCCcceEEccCCCHHHHHHHHHHHhCCcccCCCccHHHHHHHHHHHhCCcc
Q 002538 302 --CGSMEAHRNFKVECLTEKHAWELFQMKVGEETLKSHPHVFELAQVVAKECGGLP 355 (911)
Q Consensus 302 --~~~~~~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~GlP 355 (911)
...+....++++++++.++-..++++.+..... .--+++..-|++.+.|.-
T Consensus 131 ~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l---~l~~ev~~~L~~~~~~d~ 183 (214)
T PRK06620 131 DLSSRIKSVLSILLNSPDDELIKILIFKHFSISSV---TISRQIIDFLLVNLPREY 183 (214)
T ss_pred HHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHccCCH
Confidence 223344558999999999988888777643221 112466677777776643
No 138
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.71 E-value=0.00027 Score=85.21 Aligned_cols=154 Identities=16% Similarity=0.226 Sum_probs=89.9
Q ss_pred cccchHHHHHHHHHHhccCCceEEEEEcCCCChHHHHHHHHHhhhccCC--CCC-ceEEEEEeCCccChHHHHHHHHHHc
Q 002538 157 IVKGLESTLEDVWRCLVEESAGIIGLYGMGGVGKTTLLTRINNKFLESP--SDF-DCVIWVVVSKDLQIEKNQEIIGKKI 233 (911)
Q Consensus 157 ~~~Gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--~~f-~~~~wv~~s~~~~~~~~~~~i~~~l 233 (911)
.++||+++++++++.|......-+.++|.+|+|||++|+.+++...... ..+ +..+|.. +... +....
T Consensus 183 ~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~-----~~~~----l~a~~ 253 (731)
T TIGR02639 183 PLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSL-----DMGS----LLAGT 253 (731)
T ss_pred cccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEe-----cHHH----Hhhhc
Confidence 4669999999999999876666677999999999999999999862111 111 3344431 1111 11100
Q ss_pred CCCCCccCCCCHHHHHHHHHHHhh-cceEEEEEccccccc----------ccccccCCCCCCCCCCC-cEEEEEcCchhh
Q 002538 234 GLFDDSWKNKNLDERALEIFKILR-EKKFVLLLDDIWERV----------NLNKVGVPLPSPQSTTA-SKVVFTTRFINV 301 (911)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~l~~~L~-~k~~LlVlDdv~~~~----------~~~~~~~~l~~~~~~~g-s~IivTtR~~~v 301 (911)
. .....++....+.+.++ .++.+|++|++.... +..++..+.. ..| -++|-+|..++.
T Consensus 254 ~------~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l----~~g~i~~IgaTt~~e~ 323 (731)
T TIGR02639 254 K------YRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPAL----SSGKLRCIGSTTYEEY 323 (731)
T ss_pred c------ccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHH----hCCCeEEEEecCHHHH
Confidence 0 11233444444554443 467899999997431 1122222221 123 345544443222
Q ss_pred hh------cc-CCcceEEccCCCHHHHHHHHHHHh
Q 002538 302 CG------SM-EAHRNFKVECLTEKHAWELFQMKV 329 (911)
Q Consensus 302 ~~------~~-~~~~~~~l~~L~~~es~~Lf~~~a 329 (911)
.. .+ .....+++++++.++..++++...
T Consensus 324 ~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 324 KNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred HHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 11 11 123578999999999999998654
No 139
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.69 E-value=0.00035 Score=73.27 Aligned_cols=44 Identities=20% Similarity=0.212 Sum_probs=31.5
Q ss_pred ccchHHHHHHHH---HHhcc------------CCceEEEEEcCCCChHHHHHHHHHhhh
Q 002538 158 VKGLESTLEDVW---RCLVE------------ESAGIIGLYGMGGVGKTTLLTRINNKF 201 (911)
Q Consensus 158 ~~Gr~~~~~~l~---~~L~~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 201 (911)
++|.+..++.|. .+..- .....+.++|++|+||||+|+.+++..
T Consensus 8 ~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l 66 (261)
T TIGR02881 8 MVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLF 66 (261)
T ss_pred hcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHH
Confidence 458877665554 33310 134567899999999999999998865
No 140
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.69 E-value=1.2e-05 Score=80.39 Aligned_cols=105 Identities=21% Similarity=0.172 Sum_probs=56.9
Q ss_pred CccEEEcccCcccccC--hhhhccCCCCcEEEccCCCCcc---cCccccCcCCCCEEeccCCCcCCcchhh-hccCcCcE
Q 002538 540 HLLTLFLSHNQLRWIS--EDFFQFMPSLKVLNLSFTKRHK---FPSGISKLASLQLIDLSYTSIRGLPEEL-KALINLKC 613 (911)
Q Consensus 540 ~L~~L~l~~~~l~~~~--~~~~~~l~~L~~L~L~~~~~~~---lp~~i~~l~~L~~L~L~~~~i~~lp~~l-~~L~~L~~ 613 (911)
.+..|.+.++.+.... ..+-..+..++.|||.+|.++. +..-+.+|++|++|+|++|++..--..+ -.+.+|+.
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~ 125 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRV 125 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEE
Confidence 3445555555443322 2233446777888888877653 2333456777777777777555411111 34567777
Q ss_pred EecCCCccccccChhhhccCccCcEEEecCC
Q 002538 614 LNLDQTKFLVTIPRHLISSFSMLHVLRMFGS 644 (911)
Q Consensus 614 L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~~ 644 (911)
|-|.|+..-..-.......++.+++|+++.|
T Consensus 126 lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 126 LVLNGTGLSWTQSTSSLDDLPKVTELHMSDN 156 (418)
T ss_pred EEEcCCCCChhhhhhhhhcchhhhhhhhccc
Confidence 7777664322222222455556666666555
No 141
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.66 E-value=0.00033 Score=78.84 Aligned_cols=179 Identities=18% Similarity=0.152 Sum_probs=101.3
Q ss_pred cccccchHHHH--HHHHHHhccC-CceEEEEEcCCCChHHHHHHHHHhhhccCCCCC-ceEEEEEeCCccChHHHHHHHH
Q 002538 155 EAIVKGLESTL--EDVWRCLVEE-SAGIIGLYGMGGVGKTTLLTRINNKFLESPSDF-DCVIWVVVSKDLQIEKNQEIIG 230 (911)
Q Consensus 155 ~~~~~Gr~~~~--~~l~~~L~~~-~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f-~~~~wv~~s~~~~~~~~~~~i~ 230 (911)
+..++|-.... ....+..... ...-+.|+|.+|+|||+|++++++... ..+. ..++|++. .+....+.
T Consensus 105 dnFv~g~~n~~a~~~~~~~~~~~~~~n~l~lyG~~G~GKTHLl~ai~~~l~--~~~~~~~v~yi~~------~~f~~~~~ 176 (440)
T PRK14088 105 ENFVVGPGNSFAYHAALEVAKNPGRYNPLFIYGGVGLGKTHLLQSIGNYVV--QNEPDLRVMYITS------EKFLNDLV 176 (440)
T ss_pred cccccCCchHHHHHHHHHHHhCcCCCCeEEEEcCCCCcHHHHHHHHHHHHH--HhCCCCeEEEEEH------HHHHHHHH
Confidence 34466754332 2333333322 245689999999999999999999872 2222 35667653 34455555
Q ss_pred HHcCCCCCccCCCCHHHHHHHHHHHhhcceEEEEEccccccc---cc-ccccCCCCCCCCCCCcEEEEEcC-chhhh---
Q 002538 231 KKIGLFDDSWKNKNLDERALEIFKILREKKFVLLLDDIWERV---NL-NKVGVPLPSPQSTTASKVVFTTR-FINVC--- 302 (911)
Q Consensus 231 ~~l~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~---~~-~~~~~~l~~~~~~~gs~IivTtR-~~~v~--- 302 (911)
..+.. ...+ .+.+....+.-+|++||+.... .+ +.+...+.. ....|..||+||. .+.-.
T Consensus 177 ~~~~~-------~~~~----~f~~~~~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~-l~~~~k~iIitsd~~p~~l~~l 244 (440)
T PRK14088 177 DSMKE-------GKLN----EFREKYRKKVDVLLIDDVQFLIGKTGVQTELFHTFNE-LHDSGKQIVICSDREPQKLSEF 244 (440)
T ss_pred HHHhc-------ccHH----HHHHHHHhcCCEEEEechhhhcCcHHHHHHHHHHHHH-HHHcCCeEEEECCCCHHHHHHH
Confidence 54431 1122 2333333445689999997431 11 122221110 0123456888874 33221
Q ss_pred -----hccCCcceEEccCCCHHHHHHHHHHHhCCcccCCCccHHHHHHHHHHHhCCcch
Q 002538 303 -----GSMEAHRNFKVECLTEKHAWELFQMKVGEETLKSHPHVFELAQVVAKECGGLPL 356 (911)
Q Consensus 303 -----~~~~~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~GlPL 356 (911)
..+....++++++.+.+.-..++++.+......- -+++..-|++.+.|.--
T Consensus 245 ~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l---~~ev~~~Ia~~~~~~~R 300 (440)
T PRK14088 245 QDRLVSRFQMGLVAKLEPPDEETRKKIARKMLEIEHGEL---PEEVLNFVAENVDDNLR 300 (440)
T ss_pred HHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHHhcCCCC---CHHHHHHHHhccccCHH
Confidence 2233455789999999999999988875432111 24677778887777543
No 142
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.65 E-value=0.00075 Score=71.34 Aligned_cols=132 Identities=12% Similarity=0.035 Sum_probs=69.5
Q ss_pred EEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCccChHHHHHHHHHHcCCCCCccCCCCHHHHHHHHHHHhhc
Q 002538 179 IIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDLQIEKNQEIIGKKIGLFDDSWKNKNLDERALEIFKILRE 258 (911)
Q Consensus 179 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~ 258 (911)
.+.++|.+|+||||+|+.+++... ........-++.++. .++ ...+.. .........+. . -
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~-~~g~~~~~~~v~v~~----~~l----~~~~~g-------~~~~~~~~~~~-~--a 120 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILH-RLGYVRKGHLVSVTR----DDL----VGQYIG-------HTAPKTKEILK-R--A 120 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHH-HcCCcccceEEEecH----HHH----hHhhcc-------cchHHHHHHHH-H--c
Confidence 578999999999999988877762 122221112444442 112 111111 11111111121 1 1
Q ss_pred ceEEEEEcccccc-----------cccccccCCCCCCCCCCCcEEEEEcCchhhhhccC--------CcceEEccCCCHH
Q 002538 259 KKFVLLLDDIWER-----------VNLNKVGVPLPSPQSTTASKVVFTTRFINVCGSME--------AHRNFKVECLTEK 319 (911)
Q Consensus 259 k~~LlVlDdv~~~-----------~~~~~~~~~l~~~~~~~gs~IivTtR~~~v~~~~~--------~~~~~~l~~L~~~ 319 (911)
..-+|+||++... ..+..+...+. ....+.+||+++.....-.... ....+++.+++.+
T Consensus 121 ~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le--~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~e 198 (284)
T TIGR02880 121 MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVME--NQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEA 198 (284)
T ss_pred cCcEEEEechhhhccCCCccchHHHHHHHHHHHHh--cCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHH
Confidence 3358899999632 11222222232 3334556777665432211111 1356899999999
Q ss_pred HHHHHHHHHhCC
Q 002538 320 HAWELFQMKVGE 331 (911)
Q Consensus 320 es~~Lf~~~a~~ 331 (911)
|-..++...+..
T Consensus 199 dl~~I~~~~l~~ 210 (284)
T TIGR02880 199 ELLVIAGLMLKE 210 (284)
T ss_pred HHHHHHHHHHHH
Confidence 999998887643
No 143
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.64 E-value=0.00013 Score=78.97 Aligned_cols=59 Identities=17% Similarity=0.254 Sum_probs=30.0
Q ss_pred ccceEEEeecCCcccCCCCCCCCCccEEEcccC-cccccChhhhccCCCCcEEEccCC-CCcccCc
Q 002538 517 EKVKRLLLMKNHIKHLPDIPTCPHLLTLFLSHN-QLRWISEDFFQFMPSLKVLNLSFT-KRHKFPS 580 (911)
Q Consensus 517 ~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~-~l~~~~~~~~~~l~~L~~L~L~~~-~~~~lp~ 580 (911)
.++++|++++|.+..+|.+ .++|++|.+++| .++.+|.. + .++|++|++++| .+..+|.
T Consensus 52 ~~l~~L~Is~c~L~sLP~L--P~sLtsL~Lsnc~nLtsLP~~-L--P~nLe~L~Ls~Cs~L~sLP~ 112 (426)
T PRK15386 52 RASGRLYIKDCDIESLPVL--PNELTEITIENCNNLTTLPGS-I--PEGLEKLTVCHCPEISGLPE 112 (426)
T ss_pred cCCCEEEeCCCCCcccCCC--CCCCcEEEccCCCCcccCCch-h--hhhhhheEccCccccccccc
Confidence 4555666666655555532 234666666554 34333332 2 135566666655 4555553
No 144
>CHL00181 cbbX CbbX; Provisional
Probab=97.64 E-value=0.00083 Score=70.94 Aligned_cols=133 Identities=13% Similarity=0.077 Sum_probs=70.3
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCccChHHHHHHHHHHcCCCCCccCCCCHHHHHHHHHHHhh
Q 002538 178 GIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDLQIEKNQEIIGKKIGLFDDSWKNKNLDERALEIFKILR 257 (911)
Q Consensus 178 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~ 257 (911)
..+.++|.+|+||||+|+.+++.. ...+.-...-|+.++.. .+ ...... ...... ..+.+.
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~-~~~g~~~~~~~~~v~~~----~l----~~~~~g-------~~~~~~-~~~l~~-- 120 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADIL-YKLGYIKKGHLLTVTRD----DL----VGQYIG-------HTAPKT-KEVLKK-- 120 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHH-HHcCCCCCCceEEecHH----HH----HHHHhc-------cchHHH-HHHHHH--
Confidence 357899999999999999998875 21111111124444421 22 111110 011111 111111
Q ss_pred cceEEEEEcccccc-----------cccccccCCCCCCCCCCCcEEEEEcCchhhhhcc--------CCcceEEccCCCH
Q 002538 258 EKKFVLLLDDIWER-----------VNLNKVGVPLPSPQSTTASKVVFTTRFINVCGSM--------EAHRNFKVECLTE 318 (911)
Q Consensus 258 ~k~~LlVlDdv~~~-----------~~~~~~~~~l~~~~~~~gs~IivTtR~~~v~~~~--------~~~~~~~l~~L~~ 318 (911)
...-+|++|++... +....+...+. +.....+||+++....+...+ .....+++.+++.
T Consensus 121 a~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me--~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~ 198 (287)
T CHL00181 121 AMGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVME--NQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTP 198 (287)
T ss_pred ccCCEEEEEccchhccCCCccchHHHHHHHHHHHHh--cCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCH
Confidence 12348999999642 11122222222 333456777777544332111 1234789999999
Q ss_pred HHHHHHHHHHhCC
Q 002538 319 KHAWELFQMKVGE 331 (911)
Q Consensus 319 ~es~~Lf~~~a~~ 331 (911)
+|-.+++...+..
T Consensus 199 ~el~~I~~~~l~~ 211 (287)
T CHL00181 199 EELLQIAKIMLEE 211 (287)
T ss_pred HHHHHHHHHHHHH
Confidence 9999998887643
No 145
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.63 E-value=0.00042 Score=75.25 Aligned_cols=145 Identities=13% Similarity=0.087 Sum_probs=81.4
Q ss_pred ccccchHHHHHHHHHHhccCCc-eEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCccChHHHHHHHHHHcC
Q 002538 156 AIVKGLESTLEDVWRCLVEESA-GIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDLQIEKNQEIIGKKIG 234 (911)
Q Consensus 156 ~~~~Gr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 234 (911)
..++|.+..++.+.+++..+.. .++.++|.+|+||||+|+.+++.. ... ...++.+. .....+...+.....
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~---~~~---~~~i~~~~-~~~~~i~~~l~~~~~ 93 (316)
T PHA02544 21 DECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEV---GAE---VLFVNGSD-CRIDFVRNRLTRFAS 93 (316)
T ss_pred HHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHh---Ccc---ceEeccCc-ccHHHHHHHHHHHHH
Confidence 3467999999999999987655 466669999999999999998875 222 23333333 111111111111000
Q ss_pred CCCCccCCCCHHHHHHHHHHHhhcceEEEEEcccccc--ccc-ccccCCCCCCCCCCCcEEEEEcCchhhh-hc-cCCcc
Q 002538 235 LFDDSWKNKNLDERALEIFKILREKKFVLLLDDIWER--VNL-NKVGVPLPSPQSTTASKVVFTTRFINVC-GS-MEAHR 309 (911)
Q Consensus 235 ~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~--~~~-~~~~~~l~~~~~~~gs~IivTtR~~~v~-~~-~~~~~ 309 (911)
. ..+.+.+-+||+||+... .+. ..+...+. ....++++|+||...... .. .+...
T Consensus 94 ~------------------~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le--~~~~~~~~Ilt~n~~~~l~~~l~sR~~ 153 (316)
T PHA02544 94 T------------------VSLTGGGKVIIIDEFDRLGLADAQRHLRSFME--AYSKNCSFIITANNKNGIIEPLRSRCR 153 (316)
T ss_pred h------------------hcccCCCeEEEEECcccccCHHHHHHHHHHHH--hcCCCceEEEEcCChhhchHHHHhhce
Confidence 0 001134558899999754 111 12222222 234567888888654321 11 11224
Q ss_pred eEEccCCCHHHHHHHHHH
Q 002538 310 NFKVECLTEKHAWELFQM 327 (911)
Q Consensus 310 ~~~l~~L~~~es~~Lf~~ 327 (911)
.+.+...+.++...++..
T Consensus 154 ~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 154 VIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred EEEeCCCCHHHHHHHHHH
Confidence 567777777777666543
No 146
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.62 E-value=0.0013 Score=77.02 Aligned_cols=190 Identities=13% Similarity=0.127 Sum_probs=104.9
Q ss_pred ccccchHHHHHHHHHHhccCCce-EEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCccChHHHHHHHHHHcC
Q 002538 156 AIVKGLESTLEDVWRCLVEESAG-IIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDLQIEKNQEIIGKKIG 234 (911)
Q Consensus 156 ~~~~Gr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 234 (911)
..++|.+..++.+.+++..++.. .+.++|..|+||||+|+.+++... ...... ....++.-...+.|.....
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~-c~~~~~------~~~~c~~c~~c~~i~~~~~ 88 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVN-CTTNDP------KGRPCGTCEMCRAIAEGSA 88 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhc-CCCCCC------CCCCCccCHHHHHHhcCCC
Confidence 34679999999999888876654 567999999999999999988762 111000 0001111122222222111
Q ss_pred CCC---CccCCCCHHHHHHHHHHHh-----hcceEEEEEcccccc--cccccccCCCCCCCCCCCcEEEEEcC-chhhhh
Q 002538 235 LFD---DSWKNKNLDERALEIFKIL-----REKKFVLLLDDIWER--VNLNKVGVPLPSPQSTTASKVVFTTR-FINVCG 303 (911)
Q Consensus 235 ~~~---~~~~~~~~~~~~~~l~~~L-----~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~gs~IivTtR-~~~v~~ 303 (911)
... +.......++.. .+.+.+ .+++-++|+|++... ...+.+...+. .....+.+|++|. ...+..
T Consensus 89 ~d~~~i~~~~~~~vd~ir-~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LE--epp~~tv~Il~t~~~~kll~ 165 (585)
T PRK14950 89 VDVIEMDAASHTSVDDAR-EIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLE--EPPPHAIFILATTEVHKVPA 165 (585)
T ss_pred CeEEEEeccccCCHHHHH-HHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHh--cCCCCeEEEEEeCChhhhhH
Confidence 100 000011222221 122221 245668999999754 23444433333 2223455665553 333332
Q ss_pred c-cCCcceEEccCCCHHHHHHHHHHHhCCcccCCCccHHHHHHHHHHHhCCcchHH
Q 002538 304 S-MEAHRNFKVECLTEKHAWELFQMKVGEETLKSHPHVFELAQVVAKECGGLPLAL 358 (911)
Q Consensus 304 ~-~~~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~GlPLai 358 (911)
. .+....+++.+++.++....+.+.+...+... -.+....|++.++|.+..+
T Consensus 166 tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~i---~~eal~~La~~s~Gdlr~a 218 (585)
T PRK14950 166 TILSRCQRFDFHRHSVADMAAHLRKIAAAEGINL---EPGALEAIARAATGSMRDA 218 (585)
T ss_pred HHHhccceeeCCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHH
Confidence 2 12345788999999998888887765433111 2367788999999988644
No 147
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.61 E-value=0.00079 Score=74.29 Aligned_cols=170 Identities=15% Similarity=0.227 Sum_probs=94.5
Q ss_pred cccchHHHHHHHHHHhcc-------------CCceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCccChH
Q 002538 157 IVKGLESTLEDVWRCLVE-------------ESAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDLQIE 223 (911)
Q Consensus 157 ~~~Gr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 223 (911)
.|.|.+..+++|.+.+.- ...+-|.++|++|+|||++|+++++.. ...| +.+.. .
T Consensus 146 digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l---~~~f---i~i~~------s 213 (398)
T PTZ00454 146 DIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHT---TATF---IRVVG------S 213 (398)
T ss_pred HcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc---CCCE---EEEeh------H
Confidence 367999888888776631 135678899999999999999999976 2333 22211 1
Q ss_pred HHHHHHHHHcCCCCCccCCCCHHHHHHHHHHH-hhcceEEEEEccccccc------------c----cccccCCCCCCCC
Q 002538 224 KNQEIIGKKIGLFDDSWKNKNLDERALEIFKI-LREKKFVLLLDDIWERV------------N----LNKVGVPLPSPQS 286 (911)
Q Consensus 224 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~-L~~k~~LlVlDdv~~~~------------~----~~~~~~~l~~~~~ 286 (911)
.+.... . ... ......+... ....+.+|++|+++... . +..+...+.....
T Consensus 214 ~l~~k~---~--------ge~-~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~ 281 (398)
T PTZ00454 214 EFVQKY---L--------GEG-PRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQ 281 (398)
T ss_pred HHHHHh---c--------chh-HHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCC
Confidence 111110 1 011 1122223322 34578999999986421 0 1111111110012
Q ss_pred CCCcEEEEEcCchhhhhc--c---CCcceEEccCCCHHHHHHHHHHHhCCcccCCCccHHHHHHHHHHHhCCc
Q 002538 287 TTASKVVFTTRFINVCGS--M---EAHRNFKVECLTEKHAWELFQMKVGEETLKSHPHVFELAQVVAKECGGL 354 (911)
Q Consensus 287 ~~gs~IivTtR~~~v~~~--~---~~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~Gl 354 (911)
..+..||+||...+.... . .-+..+++...+.++-..+|+............++ .++++.+.|.
T Consensus 282 ~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~----~~la~~t~g~ 350 (398)
T PTZ00454 282 TTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDL----EDFVSRPEKI 350 (398)
T ss_pred CCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCH----HHHHHHcCCC
Confidence 345678888876554321 1 22456889888999888888876654332222333 3445556554
No 148
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.61 E-value=0.0012 Score=74.58 Aligned_cols=181 Identities=14% Similarity=0.159 Sum_probs=103.2
Q ss_pred cccchHHHHHHHHHHhccCCc-eEEEEEcCCCChHHHHHHHHHhhhccCC--------------------CCCceEEEEE
Q 002538 157 IVKGLESTLEDVWRCLVEESA-GIIGLYGMGGVGKTTLLTRINNKFLESP--------------------SDFDCVIWVV 215 (911)
Q Consensus 157 ~~~Gr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~--------------------~~f~~~~wv~ 215 (911)
.++|.+..++.+.+++..++. ..+.++|..|+||||+|+.+++...... .+++ .+++.
T Consensus 18 diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d-~~~i~ 96 (451)
T PRK06305 18 EILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD-VLEID 96 (451)
T ss_pred HhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc-eEEee
Confidence 466999999999999987765 4678999999999999999988752110 0111 11111
Q ss_pred eCCccChHHHHHHHHHHcCCCCCccCCCCHHHHHHHHHH-HhhcceEEEEEccccccc--ccccccCCCCCCCCCCCcEE
Q 002538 216 VSKDLQIEKNQEIIGKKIGLFDDSWKNKNLDERALEIFK-ILREKKFVLLLDDIWERV--NLNKVGVPLPSPQSTTASKV 292 (911)
Q Consensus 216 ~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~L~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~gs~I 292 (911)
......+.+ ..+..+.+.. -..+++-++|+|++.... ..+.+...+. ....+..+
T Consensus 97 g~~~~gid~--------------------ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lE--ep~~~~~~ 154 (451)
T PRK06305 97 GASHRGIED--------------------IRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLE--EPPQHVKF 154 (451)
T ss_pred ccccCCHHH--------------------HHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhh--cCCCCceE
Confidence 111111111 1111111110 113566789999997542 2333333333 22235556
Q ss_pred EEEcC-chhhhhc-cCCcceEEccCCCHHHHHHHHHHHhCCcccCCCccHHHHHHHHHHHhCCcch-HHHHHHh
Q 002538 293 VFTTR-FINVCGS-MEAHRNFKVECLTEKHAWELFQMKVGEETLKSHPHVFELAQVVAKECGGLPL-ALITIGR 363 (911)
Q Consensus 293 ivTtR-~~~v~~~-~~~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~GlPL-ai~~~g~ 363 (911)
|++|. ...+... .+....+++.++++++....+.+.+...+. .--.+.+..|++.++|.+- |+..+-.
T Consensus 155 Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~---~i~~~al~~L~~~s~gdlr~a~~~Lek 225 (451)
T PRK06305 155 FLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGI---ETSREALLPIARAAQGSLRDAESLYDY 225 (451)
T ss_pred EEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 66553 3333322 223467899999999988888776543221 1124677889999999654 5544443
No 149
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.60 E-value=0.0012 Score=76.90 Aligned_cols=189 Identities=15% Similarity=0.143 Sum_probs=104.2
Q ss_pred ccccchHHHHHHHHHHhccCCce-EEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCccChHHHHHHHHHHcC
Q 002538 156 AIVKGLESTLEDVWRCLVEESAG-IIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDLQIEKNQEIIGKKIG 234 (911)
Q Consensus 156 ~~~~Gr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 234 (911)
..++|.+..++.+.+++..+++. .+-++|+.|+||||+|+.+++... ..+... .+-.+ ..+.. . .+
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~Ln--C~~~~~-~~~pC------~~C~~-~---~~ 84 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALN--CSHKTD-LLEPC------QECIE-N---VN 84 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhc--ccccCC-CCCch------hHHHH-h---hc
Confidence 34669999999999999877655 567999999999999999988751 111000 00000 00000 0 00
Q ss_pred CCC-----CccCCCCHHHHHHHHHHHh-----hcceEEEEEcccccc--cccccccCCCCCCCCCCCcEEE-EEcCchhh
Q 002538 235 LFD-----DSWKNKNLDERALEIFKIL-----REKKFVLLLDDIWER--VNLNKVGVPLPSPQSTTASKVV-FTTRFINV 301 (911)
Q Consensus 235 ~~~-----~~~~~~~~~~~~~~l~~~L-----~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~gs~Ii-vTtR~~~v 301 (911)
... +.......++ ++.+.+.+ .+++-++|+|++... ..+..+...+. .......+| +|++...+
T Consensus 85 ~~~Dvieidaasn~~vd~-IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLE--EPP~~tifILaTte~~KL 161 (725)
T PRK07133 85 NSLDIIEMDAASNNGVDE-IRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLE--EPPKHVIFILATTEVHKI 161 (725)
T ss_pred CCCcEEEEeccccCCHHH-HHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhh--cCCCceEEEEEcCChhhh
Confidence 000 0000011222 12222222 356669999999753 23434433332 222244444 55554444
Q ss_pred hhc-cCCcceEEccCCCHHHHHHHHHHHhCCcccCCCccHHHHHHHHHHHhCCcch-HHHHHHh
Q 002538 302 CGS-MEAHRNFKVECLTEKHAWELFQMKVGEETLKSHPHVFELAQVVAKECGGLPL-ALITIGR 363 (911)
Q Consensus 302 ~~~-~~~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~GlPL-ai~~~g~ 363 (911)
... .+....+++.+++.++....+...+...+.. .-.+.+..|++.++|.+- |+..+-.
T Consensus 162 l~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI~---id~eAl~~LA~lS~GslR~AlslLek 222 (725)
T PRK07133 162 PLTILSRVQRFNFRRISEDEIVSRLEFILEKENIS---YEKNALKLIAKLSSGSLRDALSIAEQ 222 (725)
T ss_pred hHHHHhhceeEEccCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 322 2334689999999999988887765332211 113567789999999664 5554443
No 150
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.58 E-value=0.00047 Score=77.46 Aligned_cols=158 Identities=22% Similarity=0.174 Sum_probs=90.7
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCccChHHHHHHHHHHcCCCCCccCCCCHHHHHHHHHHHh
Q 002538 177 AGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDLQIEKNQEIIGKKIGLFDDSWKNKNLDERALEIFKIL 256 (911)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L 256 (911)
...+.|+|..|+|||+|++++++... ....-..+++++. .+....+...+... ..+ .+.+.+
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~-~~~~~~~v~yi~~------~~~~~~~~~~~~~~-------~~~----~~~~~~ 197 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEIL-ENNPNAKVVYVSS------EKFTNDFVNALRNN-------KME----EFKEKY 197 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHH-HhCCCCcEEEEEH------HHHHHHHHHHHHcC-------CHH----HHHHHH
Confidence 35688999999999999999999872 2211234566643 33344444444211 122 223333
Q ss_pred hcceEEEEEcccccccc---c-ccccCCCCCCCCCCCcEEEEEcCch-hh--------hhccCCcceEEccCCCHHHHHH
Q 002538 257 REKKFVLLLDDIWERVN---L-NKVGVPLPSPQSTTASKVVFTTRFI-NV--------CGSMEAHRNFKVECLTEKHAWE 323 (911)
Q Consensus 257 ~~k~~LlVlDdv~~~~~---~-~~~~~~l~~~~~~~gs~IivTtR~~-~v--------~~~~~~~~~~~l~~L~~~es~~ 323 (911)
++ .-+|||||+..... + +.+...+.. ....|..||+||... .- ...+.....+.+++.+.++-..
T Consensus 198 ~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~-~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~ 275 (405)
T TIGR00362 198 RS-VDLLLIDDIQFLAGKERTQEEFFHTFNA-LHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLA 275 (405)
T ss_pred Hh-CCEEEEehhhhhcCCHHHHHHHHHHHHH-HHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHH
Confidence 32 34889999975321 1 112211110 012355688877642 21 2223334578999999999999
Q ss_pred HHHHHhCCcccCCCccHHHHHHHHHHHhCCcchH
Q 002538 324 LFQMKVGEETLKSHPHVFELAQVVAKECGGLPLA 357 (911)
Q Consensus 324 Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~GlPLa 357 (911)
++.+.+....... -+++...|++.+.|.+-.
T Consensus 276 il~~~~~~~~~~l---~~e~l~~ia~~~~~~~r~ 306 (405)
T TIGR00362 276 ILQKKAEEEGLEL---PDEVLEFIAKNIRSNVRE 306 (405)
T ss_pred HHHHHHHHcCCCC---CHHHHHHHHHhcCCCHHH
Confidence 9998875433111 246777777877776543
No 151
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.57 E-value=3.7e-05 Score=90.35 Aligned_cols=129 Identities=21% Similarity=0.253 Sum_probs=95.5
Q ss_pred ccceEEEeecCCccc--CCC--CCCCCCccEEEcccCccccc-ChhhhccCCCCcEEEccCCCCcccCccccCcCCCCEE
Q 002538 517 EKVKRLLLMKNHIKH--LPD--IPTCPHLLTLFLSHNQLRWI-SEDFFQFMPSLKVLNLSFTKRHKFPSGISKLASLQLI 591 (911)
Q Consensus 517 ~~l~~L~l~~~~~~~--l~~--~~~~~~L~~L~l~~~~l~~~-~~~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L 591 (911)
.++++|++.+...-. .+. ...+|.|++|.+.+-.+... -...+.++++|+.||+|+++++.+ .++++|++|+.|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence 389999998754321 111 36789999999998755322 234467899999999999999998 689999999999
Q ss_pred eccCCCcCCcc--hhhhccCcCcEEecCCCccccccChh------hhccCccCcEEEecCCCCC
Q 002538 592 DLSYTSIRGLP--EELKALINLKCLNLDQTKFLVTIPRH------LISSFSMLHVLRMFGSGSS 647 (911)
Q Consensus 592 ~L~~~~i~~lp--~~l~~L~~L~~L~L~~~~~l~~lp~~------~i~~l~~L~~L~l~~~~~~ 647 (911)
.+.+-.+..-+ ..+.+|++|++||++...... -+.- .-..|++|+.|+.+++...
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~-~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNND-DTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeecccccccc-chHHHHHHHHhcccCccccEEecCCcchh
Confidence 99887776522 467899999999999875422 2211 1245899999999987654
No 152
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.56 E-value=0.00034 Score=78.43 Aligned_cols=152 Identities=15% Similarity=0.104 Sum_probs=86.6
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCccChHHHHHHHHHHcCCCCCccCCCCHHHHHHHHHHHh
Q 002538 177 AGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDLQIEKNQEIIGKKIGLFDDSWKNKNLDERALEIFKIL 256 (911)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L 256 (911)
...+.|+|..|+|||+|++++++... .....+++++ ...+...+...+... . ...+....
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~---~~~~~v~yi~------~~~f~~~~~~~l~~~-------~----~~~f~~~~ 200 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALR---ESGGKILYVR------SELFTEHLVSAIRSG-------E----MQRFRQFY 200 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHH---HcCCCEEEee------HHHHHHHHHHHHhcc-------h----HHHHHHHc
Confidence 35688999999999999999999872 1223355554 233344444444211 1 12233333
Q ss_pred hcceEEEEEcccccccc----cccccCCCCCCCCCCCcEEEEEcCch-h--------hhhccCCcceEEccCCCHHHHHH
Q 002538 257 REKKFVLLLDDIWERVN----LNKVGVPLPSPQSTTASKVVFTTRFI-N--------VCGSMEAHRNFKVECLTEKHAWE 323 (911)
Q Consensus 257 ~~k~~LlVlDdv~~~~~----~~~~~~~l~~~~~~~gs~IivTtR~~-~--------v~~~~~~~~~~~l~~L~~~es~~ 323 (911)
+ +.-+|++||+..... .+.+...+.. ....|..||+||... . +...+....++++.+++.++-..
T Consensus 201 ~-~~dvLiIDDiq~l~~k~~~qeelf~l~N~-l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~ 278 (445)
T PRK12422 201 R-NVDALFIEDIEVFSGKGATQEEFFHTFNS-LHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRS 278 (445)
T ss_pred c-cCCEEEEcchhhhcCChhhHHHHHHHHHH-HHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHH
Confidence 2 344888999965421 1122222110 011355788888542 2 22334445688999999999999
Q ss_pred HHHHHhCCcccCCCccHHHHHHHHHHHhCC
Q 002538 324 LFQMKVGEETLKSHPHVFELAQVVAKECGG 353 (911)
Q Consensus 324 Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~G 353 (911)
++.+++......- -+++..-|++.+.|
T Consensus 279 iL~~k~~~~~~~l---~~evl~~la~~~~~ 305 (445)
T PRK12422 279 FLERKAEALSIRI---EETALDFLIEALSS 305 (445)
T ss_pred HHHHHHHHcCCCC---CHHHHHHHHHhcCC
Confidence 9988875432111 13555556665554
No 153
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.55 E-value=0.0018 Score=75.76 Aligned_cols=191 Identities=15% Similarity=0.064 Sum_probs=103.1
Q ss_pred cccchHHHHHHHHHHhccCCc-eEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCccChHHHHHHHHHHcCC
Q 002538 157 IVKGLESTLEDVWRCLVEESA-GIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDLQIEKNQEIIGKKIGL 235 (911)
Q Consensus 157 ~~~Gr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 235 (911)
.++|.+..+..+.+++..++. +.+-++|..|+||||+|+.+++... ....+... ...+..-..-+.+......
T Consensus 17 ~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~--c~~~~~~~----~~~Cg~C~~C~~i~~g~h~ 90 (620)
T PRK14948 17 ELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLN--CLNSDKPT----PEPCGKCELCRAIAAGNAL 90 (620)
T ss_pred hccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhc--CCCcCCCC----CCCCcccHHHHHHhcCCCc
Confidence 356999999999999887654 5778999999999999999998862 11111000 0011111111222211110
Q ss_pred CC---CccCCCCHHHHHHHHHHHh-----hcceEEEEEccccccc--ccccccCCCCCCCCCCCcEEEE-EcCchhhhhc
Q 002538 236 FD---DSWKNKNLDERALEIFKIL-----REKKFVLLLDDIWERV--NLNKVGVPLPSPQSTTASKVVF-TTRFINVCGS 304 (911)
Q Consensus 236 ~~---~~~~~~~~~~~~~~l~~~L-----~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~gs~Iiv-TtR~~~v~~~ 304 (911)
.. +.......+++.+.+ ..+ .+++-++|+|++.... .+..+...+. .......+|+ |+....+...
T Consensus 91 D~~ei~~~~~~~vd~IReii-~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LE--ePp~~tvfIL~t~~~~~llpT 167 (620)
T PRK14948 91 DVIEIDAASNTGVDNIRELI-ERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLE--EPPPRVVFVLATTDPQRVLPT 167 (620)
T ss_pred cEEEEeccccCCHHHHHHHH-HHHhhChhcCCceEEEEECccccCHHHHHHHHHHHh--cCCcCeEEEEEeCChhhhhHH
Confidence 00 000111222222221 211 2455689999997542 3444433333 2223444454 4433333322
Q ss_pred -cCCcceEEccCCCHHHHHHHHHHHhCCcccCCCccHHHHHHHHHHHhCCcchHHH
Q 002538 305 -MEAHRNFKVECLTEKHAWELFQMKVGEETLKSHPHVFELAQVVAKECGGLPLALI 359 (911)
Q Consensus 305 -~~~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~GlPLai~ 359 (911)
.+....+++.+++.++....+.+.+....... -.+....|++.++|.+..+.
T Consensus 168 IrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~i---s~~al~~La~~s~G~lr~A~ 220 (620)
T PRK14948 168 IISRCQRFDFRRIPLEAMVQHLSEIAEKESIEI---EPEALTLVAQRSQGGLRDAE 220 (620)
T ss_pred HHhheeEEEecCCCHHHHHHHHHHHHHHhCCCC---CHHHHHHHHHHcCCCHHHHH
Confidence 22345788889999988887777664332111 13567889999999876443
No 154
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.54 E-value=0.00045 Score=78.58 Aligned_cols=180 Identities=19% Similarity=0.151 Sum_probs=100.8
Q ss_pred cccccchHHH--HHHHHHHhccC--CceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCccChHHHHHHHH
Q 002538 155 EAIVKGLEST--LEDVWRCLVEE--SAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDLQIEKNQEIIG 230 (911)
Q Consensus 155 ~~~~~Gr~~~--~~~l~~~L~~~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 230 (911)
+..++|.... ......+.... ...-+.|+|..|+|||+|++++++... ....-..+++++.. .+...+.
T Consensus 122 d~fv~g~~n~~a~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~-~~~~~~~v~yi~~~------~~~~~~~ 194 (450)
T PRK00149 122 DNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNYIL-EKNPNAKVVYVTSE------KFTNDFV 194 (450)
T ss_pred cccccCCCcHHHHHHHHHHHhCcCccCCeEEEECCCCCCHHHHHHHHHHHHH-HhCCCCeEEEEEHH------HHHHHHH
Confidence 3345565432 33333333322 335688999999999999999999972 21112345666432 2333344
Q ss_pred HHcCCCCCccCCCCHHHHHHHHHHHhhcceEEEEEcccccccc---c-ccccCCCCCCCCCCCcEEEEEcCchh------
Q 002538 231 KKIGLFDDSWKNKNLDERALEIFKILREKKFVLLLDDIWERVN---L-NKVGVPLPSPQSTTASKVVFTTRFIN------ 300 (911)
Q Consensus 231 ~~l~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~~---~-~~~~~~l~~~~~~~gs~IivTtR~~~------ 300 (911)
..+.. ... ..+.+.++ +.-+|||||+..... + +.+...+.. ....|..||+||....
T Consensus 195 ~~~~~-------~~~----~~~~~~~~-~~dlLiiDDi~~l~~~~~~~~~l~~~~n~-l~~~~~~iiits~~~p~~l~~l 261 (450)
T PRK00149 195 NALRN-------NTM----EEFKEKYR-SVDVLLIDDIQFLAGKERTQEEFFHTFNA-LHEAGKQIVLTSDRPPKELPGL 261 (450)
T ss_pred HHHHc-------CcH----HHHHHHHh-cCCEEEEehhhhhcCCHHHHHHHHHHHHH-HHHCCCcEEEECCCCHHHHHHH
Confidence 33321 111 22333333 344899999965311 1 122221110 0123456888876432
Q ss_pred ---hhhccCCcceEEccCCCHHHHHHHHHHHhCCcccCCCccHHHHHHHHHHHhCCcchH
Q 002538 301 ---VCGSMEAHRNFKVECLTEKHAWELFQMKVGEETLKSHPHVFELAQVVAKECGGLPLA 357 (911)
Q Consensus 301 ---v~~~~~~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~GlPLa 357 (911)
+...+....++++++.+.++-..++++++..... .--+++..-|++.+.|..-.
T Consensus 262 ~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~~~~---~l~~e~l~~ia~~~~~~~R~ 318 (450)
T PRK00149 262 EERLRSRFEWGLTVDIEPPDLETRIAILKKKAEEEGI---DLPDEVLEFIAKNITSNVRE 318 (450)
T ss_pred HHHHHhHhcCCeeEEecCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHcCcCCCHHH
Confidence 1233444567899999999999999998754321 12246778888888876553
No 155
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.53 E-value=0.002 Score=74.43 Aligned_cols=193 Identities=12% Similarity=0.085 Sum_probs=105.4
Q ss_pred ccccchHHHHHHHHHHhccCCce-EEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCccChHHHHHHHHHHcC
Q 002538 156 AIVKGLESTLEDVWRCLVEESAG-IIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDLQIEKNQEIIGKKIG 234 (911)
Q Consensus 156 ~~~~Gr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 234 (911)
..++|-+..++.+.+++..++.+ .+.++|..|+||||+|+.+++... -...... ..+....+- +.|...-.
T Consensus 16 ~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~-c~~~~~~---~pC~~C~~C----~~i~~~~~ 87 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLN-CVNGPTP---MPCGECSSC----KSIDNDNS 87 (563)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhc-cccCCCC---CCCccchHH----HHHHcCCC
Confidence 34679999999999999877655 578999999999999999988762 1111100 000000000 01110000
Q ss_pred CC---CCccCCCCHHHHHHHH---HH-HhhcceEEEEEccccccc--ccccccCCCCCCCCCCCcEEEEEcCc-hhhhhc
Q 002538 235 LF---DDSWKNKNLDERALEI---FK-ILREKKFVLLLDDIWERV--NLNKVGVPLPSPQSTTASKVVFTTRF-INVCGS 304 (911)
Q Consensus 235 ~~---~~~~~~~~~~~~~~~l---~~-~L~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~gs~IivTtR~-~~v~~~ 304 (911)
.. -+.......+++.... .. -..+++-++|+|++.... .+..+...+. .....+.+|++|.+ ..+...
T Consensus 88 ~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LE--epp~~~vfI~~tte~~kL~~t 165 (563)
T PRK06647 88 LDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIE--EPPPYIVFIFATTEVHKLPAT 165 (563)
T ss_pred CCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhc--cCCCCEEEEEecCChHHhHHH
Confidence 00 0000011222222211 11 123566689999997543 3444444443 22345556655543 333322
Q ss_pred -cCCcceEEccCCCHHHHHHHHHHHhCCcccCCCccHHHHHHHHHHHhCCcch-HHHHH
Q 002538 305 -MEAHRNFKVECLTEKHAWELFQMKVGEETLKSHPHVFELAQVVAKECGGLPL-ALITI 361 (911)
Q Consensus 305 -~~~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~GlPL-ai~~~ 361 (911)
.+....++..+++.++-...+.+.+..... +--.+....|++.++|.+- |+..+
T Consensus 166 I~SRc~~~~f~~l~~~el~~~L~~i~~~egi---~id~eAl~lLa~~s~GdlR~alslL 221 (563)
T PRK06647 166 IKSRCQHFNFRLLSLEKIYNMLKKVCLEDQI---KYEDEALKWIAYKSTGSVRDAYTLF 221 (563)
T ss_pred HHHhceEEEecCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 223456899999999988888776643321 1224677788999999775 44443
No 156
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.52 E-value=0.00055 Score=83.62 Aligned_cols=154 Identities=16% Similarity=0.162 Sum_probs=89.6
Q ss_pred cccchHHHHHHHHHHhccCCceEEEEEcCCCChHHHHHHHHHhhhccCC--CC-CceEEEEEeCCccChHHHHHHHHHHc
Q 002538 157 IVKGLESTLEDVWRCLVEESAGIIGLYGMGGVGKTTLLTRINNKFLESP--SD-FDCVIWVVVSKDLQIEKNQEIIGKKI 233 (911)
Q Consensus 157 ~~~Gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--~~-f~~~~wv~~s~~~~~~~~~~~i~~~l 233 (911)
.++||+++++++++.|......-+.++|.+|+|||++|+.++....... .. -+..+|.- +...+ ....
T Consensus 180 ~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l-----~~~~l----~ag~ 250 (821)
T CHL00095 180 PVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITL-----DIGLL----LAGT 250 (821)
T ss_pred CCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEe-----eHHHH----hccC
Confidence 3679999999999999876666667999999999999999998862111 11 12445531 11111 1100
Q ss_pred CCCCCccCCCCHHHHHHHHHHHhh-cceEEEEEccccccc---------ccccccCCCCCCCCCCCcEEEEEcCchhhhh
Q 002538 234 GLFDDSWKNKNLDERALEIFKILR-EKKFVLLLDDIWERV---------NLNKVGVPLPSPQSTTASKVVFTTRFINVCG 303 (911)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~l~~~L~-~k~~LlVlDdv~~~~---------~~~~~~~~l~~~~~~~gs~IivTtR~~~v~~ 303 (911)
. .....++....+.+.++ .++.+|++|++.... +...+..+.. .. ..-++|.+|..++...
T Consensus 251 ~------~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l--~r-g~l~~IgaTt~~ey~~ 321 (821)
T CHL00095 251 K------YRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPAL--AR-GELQCIGATTLDEYRK 321 (821)
T ss_pred C------CccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHH--hC-CCcEEEEeCCHHHHHH
Confidence 0 12233444444444443 467999999996421 1122222221 11 1235555555444311
Q ss_pred c-------cCCcceEEccCCCHHHHHHHHHHH
Q 002538 304 S-------MEAHRNFKVECLTEKHAWELFQMK 328 (911)
Q Consensus 304 ~-------~~~~~~~~l~~L~~~es~~Lf~~~ 328 (911)
. ......+.+...+.++...+++..
T Consensus 322 ~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l 353 (821)
T CHL00095 322 HIEKDPALERRFQPVYVGEPSVEETIEILFGL 353 (821)
T ss_pred HHhcCHHHHhcceEEecCCCCHHHHHHHHHHH
Confidence 1 122356788899999988888654
No 157
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.50 E-value=0.00096 Score=75.25 Aligned_cols=156 Identities=15% Similarity=0.198 Sum_probs=87.5
Q ss_pred ccchHHHHHHHHHHhcc-------------CCceEEEEEcCCCChHHHHHHHHHhhhccCC---CCCceEEEEEeCCccC
Q 002538 158 VKGLESTLEDVWRCLVE-------------ESAGIIGLYGMGGVGKTTLLTRINNKFLESP---SDFDCVIWVVVSKDLQ 221 (911)
Q Consensus 158 ~~Gr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~~f~~~~wv~~s~~~~ 221 (911)
|.|.+..++++.+.+.. ...+-+.++|++|+|||++|+++++... .. .......++.+...
T Consensus 184 IgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~-~~i~~~~~~~~~fl~v~~~-- 260 (512)
T TIGR03689 184 IGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLA-QRIGAETGDKSYFLNIKGP-- 260 (512)
T ss_pred cCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhc-cccccccCCceeEEeccch--
Confidence 66899999888887631 1345688999999999999999999862 11 01223444444321
Q ss_pred hHHHHHHHHHHcCCCCCccCCCCHHHHHHHHHHHh-----hcceEEEEEccccccc---------cc-----ccccCCCC
Q 002538 222 IEKNQEIIGKKIGLFDDSWKNKNLDERALEIFKIL-----REKKFVLLLDDIWERV---------NL-----NKVGVPLP 282 (911)
Q Consensus 222 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L-----~~k~~LlVlDdv~~~~---------~~-----~~~~~~l~ 282 (911)
.+ +... . ...+.....+.+.. .+++++|+||+++... +. ..+...+.
T Consensus 261 --eL----l~ky-------v-Gete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LD 326 (512)
T TIGR03689 261 --EL----LNKY-------V-GETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELD 326 (512)
T ss_pred --hh----cccc-------c-chHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhc
Confidence 11 0000 0 01112222222222 2478999999997531 11 11111111
Q ss_pred CCCCCCCcEEEEEcCchhhhh-cc----CCcceEEccCCCHHHHHHHHHHHhC
Q 002538 283 SPQSTTASKVVFTTRFINVCG-SM----EAHRNFKVECLTEKHAWELFQMKVG 330 (911)
Q Consensus 283 ~~~~~~gs~IivTtR~~~v~~-~~----~~~~~~~l~~L~~~es~~Lf~~~a~ 330 (911)
......+..||.||...+... .+ .-+..+++...+.++..++|+.+..
T Consensus 327 gl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~ 379 (512)
T TIGR03689 327 GVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLT 379 (512)
T ss_pred ccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhh
Confidence 001123445566665554422 11 1245689999999999999998864
No 158
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.50 E-value=0.0029 Score=71.84 Aligned_cols=173 Identities=16% Similarity=0.156 Sum_probs=99.4
Q ss_pred cccchHHHHHHHHHHhccCCce-EEEEEcCCCChHHHHHHHHHhhhccCCC-C-----------------CceEEEEEeC
Q 002538 157 IVKGLESTLEDVWRCLVEESAG-IIGLYGMGGVGKTTLLTRINNKFLESPS-D-----------------FDCVIWVVVS 217 (911)
Q Consensus 157 ~~~Gr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~-~-----------------f~~~~wv~~s 217 (911)
.++|.+..++.+.+++..+... .+.++|+.|+||||+|+.++........ . +...+++..+
T Consensus 17 diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~eidaa 96 (486)
T PRK14953 17 EVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIEIDAA 96 (486)
T ss_pred HccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEEEeCc
Confidence 4669999999999999876655 4668999999999999999887521000 0 0011111111
Q ss_pred CccChHHHHHHHHHHcCCCCCccCCCCHHHHHHHHHHHh-----hcceEEEEEccccccc--ccccccCCCCCCCCCCCc
Q 002538 218 KDLQIEKNQEIIGKKIGLFDDSWKNKNLDERALEIFKIL-----REKKFVLLLDDIWERV--NLNKVGVPLPSPQSTTAS 290 (911)
Q Consensus 218 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L-----~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~gs 290 (911)
. ....++. ..+.+.. .+++-++|+|+++... ....+...+. ......
T Consensus 97 s-----------------------~~gvd~i-r~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LE--epp~~~ 150 (486)
T PRK14953 97 S-----------------------NRGIDDI-RALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLE--EPPPRT 150 (486)
T ss_pred c-----------------------CCCHHHH-HHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHh--cCCCCe
Confidence 1 1111111 1222222 3566799999997542 2333333332 222234
Q ss_pred EEEE-EcCchhhhhc-cCCcceEEccCCCHHHHHHHHHHHhCCcccCCCccHHHHHHHHHHHhCCcchHH
Q 002538 291 KVVF-TTRFINVCGS-MEAHRNFKVECLTEKHAWELFQMKVGEETLKSHPHVFELAQVVAKECGGLPLAL 358 (911)
Q Consensus 291 ~Iiv-TtR~~~v~~~-~~~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~GlPLai 358 (911)
.+|+ ||+...+... ......+++.+++.++....+.+.+...+.. --.+....|++.++|.+-.+
T Consensus 151 v~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~---id~~al~~La~~s~G~lr~a 217 (486)
T PRK14953 151 IFILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIE---YEEKALDLLAQASEGGMRDA 217 (486)
T ss_pred EEEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHH
Confidence 4444 5544444322 2234578999999999888887765433211 12356677888899876543
No 159
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.49 E-value=0.00017 Score=78.02 Aligned_cols=70 Identities=21% Similarity=0.510 Sum_probs=46.7
Q ss_pred CcceEEEeeeccCCCceeecccccccccceEeeccccccceeEecccCccccccccccCCccCEEEEecCCCCCCCcccc
Q 002538 699 SCTQAIFLQCFKDSKSIYAAALADLKHLKKLCISQCEELEELKIDCTGEVKRMCQPYIFRSLNKVQIYSCPVLKDLTFLV 778 (911)
Q Consensus 699 ~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~~l~ 778 (911)
.+++.|++++| .+..++ .+ .++|++|.+++|..++.++ +. .+++|+.|++++|..+..+|
T Consensus 52 ~~l~~L~Is~c-~L~sLP--~L--P~sLtsL~Lsnc~nLtsLP-~~-----------LP~nLe~L~Ls~Cs~L~sLP--- 111 (426)
T PRK15386 52 RASGRLYIKDC-DIESLP--VL--PNELTEITIENCNNLTTLP-GS-----------IPEGLEKLTVCHCPEISGLP--- 111 (426)
T ss_pred cCCCEEEeCCC-CCcccC--CC--CCCCcEEEccCCCCcccCC-ch-----------hhhhhhheEccCcccccccc---
Confidence 57788888877 455554 22 2468888888888776542 11 14578888888887776555
Q ss_pred cCCCcceEeEec
Q 002538 779 FAPNLKSIDVRS 790 (911)
Q Consensus 779 ~l~~L~~L~L~~ 790 (911)
++|+.|+|.+
T Consensus 112 --~sLe~L~L~~ 121 (426)
T PRK15386 112 --ESVRSLEIKG 121 (426)
T ss_pred --cccceEEeCC
Confidence 4677777754
No 160
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.48 E-value=0.0042 Score=66.90 Aligned_cols=206 Identities=17% Similarity=0.145 Sum_probs=120.4
Q ss_pred ccccchHHHHHHHHHHhcc----CCceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCccChHHHHHHHHH
Q 002538 156 AIVKGLESTLEDVWRCLVE----ESAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDLQIEKNQEIIGK 231 (911)
Q Consensus 156 ~~~~Gr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 231 (911)
..++||+.+++.+.+++.. ...+-+.|.|-+|.|||.+...++.+...-... -.++++....-.....++..|..
T Consensus 150 ~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~-~~~v~inc~sl~~~~aiF~kI~~ 228 (529)
T KOG2227|consen 150 GTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKS-PVTVYINCTSLTEASAIFKKIFS 228 (529)
T ss_pred CCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhccc-ceeEEEeeccccchHHHHHHHHH
Confidence 4467999999999888854 467789999999999999999999987211112 24566665554566677777777
Q ss_pred HcCCCCCccCCCCHHHHHHHHHHHhhcc--eEEEEEccccccc--ccccccCCCCCCCCCCCcEEEEEcC------chhh
Q 002538 232 KIGLFDDSWKNKNLDERALEIFKILREK--KFVLLLDDIWERV--NLNKVGVPLPSPQSTTASKVVFTTR------FINV 301 (911)
Q Consensus 232 ~l~~~~~~~~~~~~~~~~~~l~~~L~~k--~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~gs~IivTtR------~~~v 301 (911)
.+--... ......+....+..+.++. -+|+|+|..+... .-..+...|.+ ..-.++|+|+--- .+..
T Consensus 229 ~~~q~~~--s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFew-p~lp~sr~iLiGiANslDlTdR~ 305 (529)
T KOG2227|consen 229 SLLQDLV--SPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEW-PKLPNSRIILIGIANSLDLTDRF 305 (529)
T ss_pred HHHHHhc--CCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhc-ccCCcceeeeeeehhhhhHHHHH
Confidence 6611110 1122255666666666543 5899999987532 11111111111 2344666654311 0111
Q ss_pred hhccC-----CcceEEccCCCHHHHHHHHHHHhCCcccC--CCccHHHHHHHHHHHhCCcchHHHHHHhhh
Q 002538 302 CGSME-----AHRNFKVECLTEKHAWELFQMKVGEETLK--SHPHVFELAQVVAKECGGLPLALITIGRAM 365 (911)
Q Consensus 302 ~~~~~-----~~~~~~l~~L~~~es~~Lf~~~a~~~~~~--~~~~~~~~~~~i~~~c~GlPLai~~~g~~l 365 (911)
...+. ....+...|.+.++-.++|..+....... .+..++-.|++++...|.+--|+.+.-+++
T Consensus 306 LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R~ai 376 (529)
T KOG2227|consen 306 LPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCRRAI 376 (529)
T ss_pred hhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 11111 23467889999999999999987654311 112233344444444455556665555444
No 161
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.48 E-value=0.00088 Score=82.08 Aligned_cols=154 Identities=13% Similarity=0.147 Sum_probs=88.7
Q ss_pred cccchHHHHHHHHHHhccCCceEEEEEcCCCChHHHHHHHHHhhhccCCCC----CceEEEEEeCCccChHHHHHHHHHH
Q 002538 157 IVKGLESTLEDVWRCLVEESAGIIGLYGMGGVGKTTLLTRINNKFLESPSD----FDCVIWVVVSKDLQIEKNQEIIGKK 232 (911)
Q Consensus 157 ~~~Gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~----f~~~~wv~~s~~~~~~~~~~~i~~~ 232 (911)
.++||+.+++++++.|.......+.++|.+|+|||++|+.++++.. .... ....+|.. +... +...
T Consensus 174 ~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~-~~~~p~~l~~~~~~~l-----~~~~----l~a~ 243 (852)
T TIGR03346 174 PVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIV-NGDVPESLKNKRLLAL-----DMGA----LIAG 243 (852)
T ss_pred cCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHh-ccCCchhhcCCeEEEe-----eHHH----Hhhc
Confidence 3679999999999999876666677999999999999999988862 1110 12333321 1111 1100
Q ss_pred cCCCCCccCCCCHHHHHHHHHHHhh--cceEEEEEccccccc---------ccccccCCCCCCCCCCCcEEEEEcCchhh
Q 002538 233 IGLFDDSWKNKNLDERALEIFKILR--EKKFVLLLDDIWERV---------NLNKVGVPLPSPQSTTASKVVFTTRFINV 301 (911)
Q Consensus 233 l~~~~~~~~~~~~~~~~~~l~~~L~--~k~~LlVlDdv~~~~---------~~~~~~~~l~~~~~~~gs~IivTtR~~~v 301 (911)
.. ...+.+.....+.+.+. +++.+|++|++.... +...+..+.. ..+ .-++|-+|..++.
T Consensus 244 ~~------~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l--~~g-~i~~IgaTt~~e~ 314 (852)
T TIGR03346 244 AK------YRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPAL--ARG-ELHCIGATTLDEY 314 (852)
T ss_pred ch------hhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhh--hcC-ceEEEEeCcHHHH
Confidence 00 11233334444444443 468999999997532 1122222222 222 2345555544433
Q ss_pred hhc-------cCCcceEEccCCCHHHHHHHHHHHh
Q 002538 302 CGS-------MEAHRNFKVECLTEKHAWELFQMKV 329 (911)
Q Consensus 302 ~~~-------~~~~~~~~l~~L~~~es~~Lf~~~a 329 (911)
-.. ......+.+...+.++...++....
T Consensus 315 r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 315 RKYIEKDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred HHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 111 1123567899999999999887654
No 162
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.48 E-value=0.00068 Score=82.65 Aligned_cols=153 Identities=14% Similarity=0.130 Sum_probs=87.0
Q ss_pred cccchHHHHHHHHHHhccCCceEEEEEcCCCChHHHHHHHHHhhhccCCCC----CceEE-EEEeCCccChHHHHHHHHH
Q 002538 157 IVKGLESTLEDVWRCLVEESAGIIGLYGMGGVGKTTLLTRINNKFLESPSD----FDCVI-WVVVSKDLQIEKNQEIIGK 231 (911)
Q Consensus 157 ~~~Gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~----f~~~~-wv~~s~~~~~~~~~~~i~~ 231 (911)
.++||+.+++++++.|.......+.++|.+|+|||++|+.++.... .... ....+ ++..+. +. .
T Consensus 179 ~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~-~~~vp~~l~~~~~~~l~l~~------l~----a 247 (857)
T PRK10865 179 PVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRII-NGEVPEGLKGRRVLALDMGA------LV----A 247 (857)
T ss_pred cCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhh-cCCCchhhCCCEEEEEehhh------hh----h
Confidence 3679999999999999887666777999999999999999999862 1110 12222 222221 10 0
Q ss_pred HcCCCCCccCCCCHHHHHHHHHHHh--hcceEEEEEccccccc---------ccccccCCCCCCCCCCCcEEEEEcCchh
Q 002538 232 KIGLFDDSWKNKNLDERALEIFKIL--REKKFVLLLDDIWERV---------NLNKVGVPLPSPQSTTASKVVFTTRFIN 300 (911)
Q Consensus 232 ~l~~~~~~~~~~~~~~~~~~l~~~L--~~k~~LlVlDdv~~~~---------~~~~~~~~l~~~~~~~gs~IivTtR~~~ 300 (911)
... .....+.....+.+.+ .+++.+|++|++.... +...+..+.. .. ..-++|-||...+
T Consensus 248 g~~------~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l--~~-g~l~~IgaTt~~e 318 (857)
T PRK10865 248 GAK------YRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPAL--AR-GELHCVGATTLDE 318 (857)
T ss_pred ccc------hhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchh--hc-CCCeEEEcCCCHH
Confidence 000 1122333344443333 2468999999997542 1223333322 22 1335555444443
Q ss_pred hhh------c-cCCcceEEccCCCHHHHHHHHHHHh
Q 002538 301 VCG------S-MEAHRNFKVECLTEKHAWELFQMKV 329 (911)
Q Consensus 301 v~~------~-~~~~~~~~l~~L~~~es~~Lf~~~a 329 (911)
.-. . ..-...+.+...+.++...+++...
T Consensus 319 ~r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 319 YRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred HHHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHh
Confidence 211 1 1122356677778899998886654
No 163
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.48 E-value=0.01 Score=59.98 Aligned_cols=168 Identities=20% Similarity=0.182 Sum_probs=93.9
Q ss_pred ccchHHHHHHHHHHhc-----cCCceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCccChHHHHHHHHHH
Q 002538 158 VKGLESTLEDVWRCLV-----EESAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDLQIEKNQEIIGKK 232 (911)
Q Consensus 158 ~~Gr~~~~~~l~~~L~-----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 232 (911)
++|.++-++++-=.+. .+.+..+.++|++|.||||||.-++++. .+ .+. ++-+....-..-+-.|+..
T Consensus 28 fiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Em-gv--n~k----~tsGp~leK~gDlaaiLt~ 100 (332)
T COG2255 28 FIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANEL-GV--NLK----ITSGPALEKPGDLAAILTN 100 (332)
T ss_pred hcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHh-cC--CeE----ecccccccChhhHHHHHhc
Confidence 5699988888755553 2467799999999999999999999997 22 221 1111111111111111111
Q ss_pred cCCCCCccCCCCHHHHHHHHHHHhhcceEEEEEccccccc---------ccccccCCCCCCCCCCCcE-----------E
Q 002538 233 IGLFDDSWKNKNLDERALEIFKILREKKFVLLLDDIWERV---------NLNKVGVPLPSPQSTTASK-----------V 292 (911)
Q Consensus 233 l~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~---------~~~~~~~~l~~~~~~~gs~-----------I 292 (911)
|+ ..=++.+|.+.... ..+++..-.. ...+.++| |
T Consensus 101 -----------------------Le-~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~-IG~gp~Arsv~ldLppFTLI 155 (332)
T COG2255 101 -----------------------LE-EGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDII-IGKGPAARSIRLDLPPFTLI 155 (332)
T ss_pred -----------------------CC-cCCeEEEehhhhcChhHHHHhhhhhhheeEEEE-EccCCccceEeccCCCeeEe
Confidence 11 23355567664321 0111100000 01222333 2
Q ss_pred EEEcCchhhhhccCC--cceEEccCCCHHHHHHHHHHHhCCcccCCCccHHHHHHHHHHHhCCcchHHHH
Q 002538 293 VFTTRFINVCGSMEA--HRNFKVECLTEKHAWELFQMKVGEETLKSHPHVFELAQVVAKECGGLPLALIT 360 (911)
Q Consensus 293 ivTtR~~~v~~~~~~--~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~ 360 (911)
=-|||.-.+..-+.. .-+.+++..+.+|-.++..+.+..-+... -++.+.+|++...|-|--+.-
T Consensus 156 GATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i---~~~~a~eIA~rSRGTPRIAnR 222 (332)
T COG2255 156 GATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIEI---DEEAALEIARRSRGTPRIANR 222 (332)
T ss_pred eeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCCC---ChHHHHHHHHhccCCcHHHHH
Confidence 248885444322211 23568899999999999998885433222 247889999999999964433
No 164
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.44 E-value=0.00071 Score=80.56 Aligned_cols=155 Identities=18% Similarity=0.264 Sum_probs=89.9
Q ss_pred cccchHHHHHHHHHHhccCCceEEEEEcCCCChHHHHHHHHHhhhccCCCC---CceEEEEEeCCccChHHHHHHHHHHc
Q 002538 157 IVKGLESTLEDVWRCLVEESAGIIGLYGMGGVGKTTLLTRINNKFLESPSD---FDCVIWVVVSKDLQIEKNQEIIGKKI 233 (911)
Q Consensus 157 ~~~Gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~---f~~~~wv~~s~~~~~~~~~~~i~~~l 233 (911)
.++||+++++++++.|......-+.++|.+|+|||++|+.+++......-. .++.+|.. +.. .+..
T Consensus 187 ~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~----~lla-- 255 (758)
T PRK11034 187 PLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIG----SLLA-- 255 (758)
T ss_pred cCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHH----HHhc--
Confidence 367999999999999987655566789999999999999999875221111 23444421 111 1110
Q ss_pred CCCCCccCCCCHHHHHHHHHHHh-hcceEEEEEcccccc----------cccccccCCCCCCCCCCCcEEEEEcCchhhh
Q 002538 234 GLFDDSWKNKNLDERALEIFKIL-REKKFVLLLDDIWER----------VNLNKVGVPLPSPQSTTASKVVFTTRFINVC 302 (911)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~l~~~L-~~k~~LlVlDdv~~~----------~~~~~~~~~l~~~~~~~gs~IivTtR~~~v~ 302 (911)
+.. ...+.+.....+...+ +.++.+|++|++... .+...+..++. . ...-+||-+|..++..
T Consensus 256 G~~----~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L--~-~g~i~vIgATt~~E~~ 328 (758)
T PRK11034 256 GTK----YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLL--S-SGKIRVIGSTTYQEFS 328 (758)
T ss_pred ccc----hhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHH--h-CCCeEEEecCChHHHH
Confidence 000 1123334444444444 346789999999743 11212222322 1 1223455555433321
Q ss_pred hc-------cCCcceEEccCCCHHHHHHHHHHHh
Q 002538 303 GS-------MEAHRNFKVECLTEKHAWELFQMKV 329 (911)
Q Consensus 303 ~~-------~~~~~~~~l~~L~~~es~~Lf~~~a 329 (911)
.. ..-...+++.+++.+++..+++...
T Consensus 329 ~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 329 NIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred HHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 11 1123578999999999999998654
No 165
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.40 E-value=0.0036 Score=72.60 Aligned_cols=193 Identities=16% Similarity=0.113 Sum_probs=102.5
Q ss_pred ccccchHHHHHHHHHHhccCCce-EEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCccChHHHHHHHHHHcC
Q 002538 156 AIVKGLESTLEDVWRCLVEESAG-IIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDLQIEKNQEIIGKKIG 234 (911)
Q Consensus 156 ~~~~Gr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 234 (911)
..++|.+..++.+.+++..++.+ .+-++|..|+||||+|+.+.+... -...-+ ...++.-..-+.|.....
T Consensus 16 ~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~-c~~~~~-------~~pC~~C~~C~~i~~g~~ 87 (559)
T PRK05563 16 EDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVN-CLNPPD-------GEPCNECEICKAITNGSL 87 (559)
T ss_pred HhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc-CCCCCC-------CCCCCccHHHHHHhcCCC
Confidence 34679999999999999876544 567899999999999999987752 111000 000000000111111000
Q ss_pred CCC---CccCCCCHHHHHHHHHHH-----hhcceEEEEEcccccc--cccccccCCCCCCCCCCCcEEEE-EcCchhhhh
Q 002538 235 LFD---DSWKNKNLDERALEIFKI-----LREKKFVLLLDDIWER--VNLNKVGVPLPSPQSTTASKVVF-TTRFINVCG 303 (911)
Q Consensus 235 ~~~---~~~~~~~~~~~~~~l~~~-----L~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~gs~Iiv-TtR~~~v~~ 303 (911)
... +.......+++. .+... ..+++-++|+|++... ..+..+...+. .......+|+ ||....+..
T Consensus 88 ~dv~eidaas~~~vd~ir-~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLE--epp~~~ifIlatt~~~ki~~ 164 (559)
T PRK05563 88 MDVIEIDAASNNGVDEIR-DIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLE--EPPAHVIFILATTEPHKIPA 164 (559)
T ss_pred CCeEEeeccccCCHHHHH-HHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhc--CCCCCeEEEEEeCChhhCcH
Confidence 000 000011122111 12221 2356668899999754 23333333333 2223444444 544443332
Q ss_pred c-cCCcceEEccCCCHHHHHHHHHHHhCCcccCCCccHHHHHHHHHHHhCCcch-HHHHHH
Q 002538 304 S-MEAHRNFKVECLTEKHAWELFQMKVGEETLKSHPHVFELAQVVAKECGGLPL-ALITIG 362 (911)
Q Consensus 304 ~-~~~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~GlPL-ai~~~g 362 (911)
. .+....++..+++.++....+...+...+... -.+....|++.++|.+. |+..+-
T Consensus 165 tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i---~~~al~~ia~~s~G~~R~al~~Ld 222 (559)
T PRK05563 165 TILSRCQRFDFKRISVEDIVERLKYILDKEGIEY---EDEALRLIARAAEGGMRDALSILD 222 (559)
T ss_pred HHHhHheEEecCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 2 22345788999999998888877664332111 13567788889988775 444443
No 166
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.40 E-value=0.0022 Score=66.78 Aligned_cols=196 Identities=20% Similarity=0.279 Sum_probs=113.8
Q ss_pred ccchHHHHHHHHHHhcc-------------CCceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCccChHH
Q 002538 158 VKGLESTLEDVWRCLVE-------------ESAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDLQIEK 224 (911)
Q Consensus 158 ~~Gr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~ 224 (911)
|=|.++.+++|.+.+.- +..+-|-++|++|.|||-||++|+++. ...| +.|.. .+-
T Consensus 153 IGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T---~AtF-----Irvvg---SEl 221 (406)
T COG1222 153 IGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQT---DATF-----IRVVG---SEL 221 (406)
T ss_pred ccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhcc---CceE-----EEecc---HHH
Confidence 56889999998887752 246678899999999999999999987 3444 22221 111
Q ss_pred HHHHHHHHcCCCCCccCCCCHHHHHHHHHHHhh-cceEEEEEccccccc------------c----cccccCCCCCCCCC
Q 002538 225 NQEIIGKKIGLFDDSWKNKNLDERALEIFKILR-EKKFVLLLDDIWERV------------N----LNKVGVPLPSPQST 287 (911)
Q Consensus 225 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~-~k~~LlVlDdv~~~~------------~----~~~~~~~l~~~~~~ 287 (911)
+++-|.+ -..+...+++.-+ ..+..|.+|.++... + .-++...+...+..
T Consensus 222 VqKYiGE-------------GaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~ 288 (406)
T COG1222 222 VQKYIGE-------------GARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPR 288 (406)
T ss_pred HHHHhcc-------------chHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCC
Confidence 2222211 1223444454443 467899999986430 0 11111112111344
Q ss_pred CCcEEEEEcCchhhhhc--c---CCcceEEccCCCHHHHHHHHHHHhCCcccCCCccHHHHHHHHHHHhCCcc----hHH
Q 002538 288 TASKVVFTTRFINVCGS--M---EAHRNFKVECLTEKHAWELFQMKVGEETLKSHPHVFELAQVVAKECGGLP----LAL 358 (911)
Q Consensus 288 ~gs~IivTtR~~~v~~~--~---~~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~GlP----Lai 358 (911)
..-|||..|-..++..- + .-++.+++..-+.+-=.++|+-++........-+++.+ ++.|.|.- -||
T Consensus 289 ~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~l----a~~~~g~sGAdlkai 364 (406)
T COG1222 289 GNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELL----ARLTEGFSGADLKAI 364 (406)
T ss_pred CCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHH----HHhcCCCchHHHHHH
Confidence 56799998877776421 1 23456777755555556788888877665555566554 44455442 356
Q ss_pred HHHHhhhccC--C---CHHHHHHHHHHH
Q 002538 359 ITIGRAMAYK--K---TREEWKYAIEVL 381 (911)
Q Consensus 359 ~~~g~~l~~~--~---~~~~w~~~~~~l 381 (911)
.+=|++++-. + +.+.+..+.++.
T Consensus 365 ctEAGm~AiR~~R~~Vt~~DF~~Av~KV 392 (406)
T COG1222 365 CTEAGMFAIRERRDEVTMEDFLKAVEKV 392 (406)
T ss_pred HHHHhHHHHHhccCeecHHHHHHHHHHH
Confidence 6666665532 1 344555554443
No 167
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.38 E-value=0.0017 Score=74.28 Aligned_cols=154 Identities=18% Similarity=0.100 Sum_probs=89.2
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCccChHHHHHHHHHHcCCCCCccCCCCHHHHHHHHHHHhh
Q 002538 178 GIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDLQIEKNQEIIGKKIGLFDDSWKNKNLDERALEIFKILR 257 (911)
Q Consensus 178 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~ 257 (911)
..+.|+|..|+|||.|++++++... ....-..+++++. .++...+...+.. ... ..+.+.++
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~-~~~~g~~V~Yita------eef~~el~~al~~-------~~~----~~f~~~y~ 376 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYAR-RLYPGTRVRYVSS------EEFTNEFINSIRD-------GKG----DSFRRRYR 376 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHH-HhCCCCeEEEeeH------HHHHHHHHHHHHh-------ccH----HHHHHHhh
Confidence 4589999999999999999999872 1111234566643 3344444433321 111 12222333
Q ss_pred cceEEEEEccccccc---ccc-cccCCCCCCCCCCCcEEEEEcCch---------hhhhccCCcceEEccCCCHHHHHHH
Q 002538 258 EKKFVLLLDDIWERV---NLN-KVGVPLPSPQSTTASKVVFTTRFI---------NVCGSMEAHRNFKVECLTEKHAWEL 324 (911)
Q Consensus 258 ~k~~LlVlDdv~~~~---~~~-~~~~~l~~~~~~~gs~IivTtR~~---------~v~~~~~~~~~~~l~~L~~~es~~L 324 (911)
. -=+|||||+.... .|+ .+...+.. ....|..|||||+.. .+...+...-++++++.+.+.-..+
T Consensus 377 ~-~DLLlIDDIq~l~gke~tqeeLF~l~N~-l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aI 454 (617)
T PRK14086 377 E-MDILLVDDIQFLEDKESTQEEFFHTFNT-LHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAI 454 (617)
T ss_pred c-CCEEEEehhccccCCHHHHHHHHHHHHH-HHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHH
Confidence 2 3488999997542 222 22222211 112356688888753 2234445567889999999999999
Q ss_pred HHHHhCCcccCCCccHHHHHHHHHHHhCCc
Q 002538 325 FQMKVGEETLKSHPHVFELAQVVAKECGGL 354 (911)
Q Consensus 325 f~~~a~~~~~~~~~~~~~~~~~i~~~c~Gl 354 (911)
+.+++....... -+++..-|++.+.+.
T Consensus 455 L~kka~~r~l~l---~~eVi~yLa~r~~rn 481 (617)
T PRK14086 455 LRKKAVQEQLNA---PPEVLEFIASRISRN 481 (617)
T ss_pred HHHHHHhcCCCC---CHHHHHHHHHhccCC
Confidence 998875433221 145666666665544
No 168
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.38 E-value=0.0084 Score=59.84 Aligned_cols=183 Identities=19% Similarity=0.221 Sum_probs=104.6
Q ss_pred cCCceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeC-CccChHHHHHHHHHHcCCCCCccCCCCHHHHHHHH
Q 002538 174 EESAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVS-KDLQIEKNQEIIGKKIGLFDDSWKNKNLDERALEI 252 (911)
Q Consensus 174 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s-~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l 252 (911)
.++-+++.++|.-|.|||++++++.... . -+.++-+.+. +..+...+...|...+............++....+
T Consensus 48 ~d~qg~~~vtGevGsGKTv~~Ral~~s~-~----~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L 122 (269)
T COG3267 48 ADGQGILAVTGEVGSGKTVLRRALLASL-N----EDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDREL 122 (269)
T ss_pred hcCCceEEEEecCCCchhHHHHHHHHhc-C----CCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHH
Confidence 3566799999999999999999655544 1 1122223333 34577788888888887632111112233444445
Q ss_pred HHHh-hcce-EEEEEcccccc--cccccccCC--CCCCCCC-CCcEEEEE---cCc---hhhhhcc-CCcce-EEccCCC
Q 002538 253 FKIL-REKK-FVLLLDDIWER--VNLNKVGVP--LPSPQST-TASKVVFT---TRF---INVCGSM-EAHRN-FKVECLT 317 (911)
Q Consensus 253 ~~~L-~~k~-~LlVlDdv~~~--~~~~~~~~~--l~~~~~~-~gs~IivT---tR~---~~v~~~~-~~~~~-~~l~~L~ 317 (911)
.... +++| ..+++||.... +.++.++.. +.. ++. .=+.+++- -+. ..+.... ..... |++.|++
T Consensus 123 ~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~-~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~ 201 (269)
T COG3267 123 AALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEE-DSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLT 201 (269)
T ss_pred HHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcc-cccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcC
Confidence 5544 4677 89999998653 122221111 110 111 11222221 111 0111111 11223 8999999
Q ss_pred HHHHHHHHHHHhCCcccCCCcc-HHHHHHHHHHHhCCcchHHHHHHh
Q 002538 318 EKHAWELFQMKVGEETLKSHPH-VFELAQVVAKECGGLPLALITIGR 363 (911)
Q Consensus 318 ~~es~~Lf~~~a~~~~~~~~~~-~~~~~~~i~~~c~GlPLai~~~g~ 363 (911)
.++...+++.+..... ...+- -.+....|.....|.|.+|.-++.
T Consensus 202 ~~~t~~yl~~~Le~a~-~~~~l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 202 EAETGLYLRHRLEGAG-LPEPLFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred hHHHHHHHHHHHhccC-CCcccCChhHHHHHHHHhccchHHHHHHHH
Confidence 9999999888875543 22222 245667889999999999987763
No 169
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.38 E-value=3e-05 Score=89.91 Aligned_cols=109 Identities=24% Similarity=0.171 Sum_probs=51.9
Q ss_pred CCCCccEEEcccC-cccccC-hhhhccCCCCcEEEccCC--CCccc----CccccCcCCCCEEeccCCC-cCC--cchhh
Q 002538 537 TCPHLLTLFLSHN-QLRWIS-EDFFQFMPSLKVLNLSFT--KRHKF----PSGISKLASLQLIDLSYTS-IRG--LPEEL 605 (911)
Q Consensus 537 ~~~~L~~L~l~~~-~l~~~~-~~~~~~l~~L~~L~L~~~--~~~~l----p~~i~~l~~L~~L~L~~~~-i~~--lp~~l 605 (911)
.++.|+.|.+.++ .+.... ......+++|+.|+++++ .+... +.....+.+|+.|+++.+. ++. +..-.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 3667777777766 333211 233455777777777763 11111 1222344566666666654 443 22222
Q ss_pred hccCcCcEEecCCCccccccC-hhhhccCccCcEEEecCCC
Q 002538 606 KALINLKCLNLDQTKFLVTIP-RHLISSFSMLHVLRMFGSG 645 (911)
Q Consensus 606 ~~L~~L~~L~L~~~~~l~~lp-~~~i~~l~~L~~L~l~~~~ 645 (911)
..+++|++|.+.+|..++... ..+..++++|++|++++|.
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence 235566666655554221111 1123345556666655554
No 170
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.34 E-value=0.0019 Score=70.14 Aligned_cols=156 Identities=17% Similarity=0.159 Sum_probs=90.0
Q ss_pred cccccchHHHH-HHHHHHhcc-C--CceEEEEEcCCCChHHHHHHHHHhhhccCCCCCc--eEEEEEeCCccChHHHHHH
Q 002538 155 EAIVKGLESTL-EDVWRCLVE-E--SAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFD--CVIWVVVSKDLQIEKNQEI 228 (911)
Q Consensus 155 ~~~~~Gr~~~~-~~l~~~L~~-~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~--~~~wv~~s~~~~~~~~~~~ 228 (911)
+..|+|-.... -.+...+.+ . ....+.|+|..|.|||.|++++.+.. ..... .+++++ .+.....
T Consensus 87 dnFv~g~~N~~A~aa~~~va~~~g~~~nplfi~G~~GlGKTHLl~Aign~~---~~~~~~a~v~y~~------se~f~~~ 157 (408)
T COG0593 87 DNFVVGPSNRLAYAAAKAVAENPGGAYNPLFIYGGVGLGKTHLLQAIGNEA---LANGPNARVVYLT------SEDFTND 157 (408)
T ss_pred hheeeCCchHHHHHHHHHHHhccCCcCCcEEEECCCCCCHHHHHHHHHHHH---HhhCCCceEEecc------HHHHHHH
Confidence 44566654332 222222222 2 36799999999999999999999997 23332 344442 2233333
Q ss_pred HHHHcCCCCCccCCCCHHHHHHHHHHHhhcceEEEEEccccccc---ccc-cccCCCCCCCCCCCcEEEEEcCchh----
Q 002538 229 IGKKIGLFDDSWKNKNLDERALEIFKILREKKFVLLLDDIWERV---NLN-KVGVPLPSPQSTTASKVVFTTRFIN---- 300 (911)
Q Consensus 229 i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~---~~~-~~~~~l~~~~~~~gs~IivTtR~~~---- 300 (911)
++..+.. ......++.. .-=++++||++... .|+ .+...|.. -...|..||+|++...
T Consensus 158 ~v~a~~~-----------~~~~~Fk~~y--~~dlllIDDiq~l~gk~~~qeefFh~FN~-l~~~~kqIvltsdr~P~~l~ 223 (408)
T COG0593 158 FVKALRD-----------NEMEKFKEKY--SLDLLLIDDIQFLAGKERTQEEFFHTFNA-LLENGKQIVLTSDRPPKELN 223 (408)
T ss_pred HHHHHHh-----------hhHHHHHHhh--ccCeeeechHhHhcCChhHHHHHHHHHHH-HHhcCCEEEEEcCCCchhhc
Confidence 3333221 1122333333 23388999997532 222 22222221 1133448999986433
Q ss_pred -----hhhccCCcceEEccCCCHHHHHHHHHHHhCCcc
Q 002538 301 -----VCGSMEAHRNFKVECLTEKHAWELFQMKVGEET 333 (911)
Q Consensus 301 -----v~~~~~~~~~~~l~~L~~~es~~Lf~~~a~~~~ 333 (911)
+.+.+...-++++.+.+.+.-..++.+++....
T Consensus 224 ~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~ 261 (408)
T COG0593 224 GLEDRLRSRLEWGLVVEIEPPDDETRLAILRKKAEDRG 261 (408)
T ss_pred cccHHHHHHHhceeEEeeCCCCHHHHHHHHHHHHHhcC
Confidence 334455667899999999999999998775444
No 171
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.33 E-value=0.0023 Score=74.57 Aligned_cols=196 Identities=15% Similarity=0.155 Sum_probs=103.6
Q ss_pred ccccchHHHHHHHHHHhccCCce-EEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCccChHHHHHHHHHHcC
Q 002538 156 AIVKGLESTLEDVWRCLVEESAG-IIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDLQIEKNQEIIGKKIG 234 (911)
Q Consensus 156 ~~~~Gr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 234 (911)
..++|.+..++.+.+.+..++++ .+-++|..|+||||+|+.+++... -....+. ..++.-..-..|...-.
T Consensus 16 ~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~-c~~~~~~-------~~c~~c~~c~~i~~g~~ 87 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALN-CEQGLTA-------EPCNVCPPCVEITEGRS 87 (576)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhc-CCCCCCC-------CCCCccHHHHHHhcCCC
Confidence 34669999999999999887665 567999999999999999988752 1111100 00000000000000000
Q ss_pred CCC---CccCCCCHHHHHHHHHHHh-----hcceEEEEEccccccc--ccccccCCCCCCCCCCCcEEEE-EcCchhhhh
Q 002538 235 LFD---DSWKNKNLDERALEIFKIL-----REKKFVLLLDDIWERV--NLNKVGVPLPSPQSTTASKVVF-TTRFINVCG 303 (911)
Q Consensus 235 ~~~---~~~~~~~~~~~~~~l~~~L-----~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~gs~Iiv-TtR~~~v~~ 303 (911)
... +.......++. ..+.+.+ .+++-++|+|++.... ....+...+. .....+.+|+ ||....+..
T Consensus 88 ~d~~eid~~s~~~v~~i-r~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LE--epp~~~~fIl~t~~~~kl~~ 164 (576)
T PRK14965 88 VDVFEIDGASNTGVDDI-RELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLE--EPPPHVKFIFATTEPHKVPI 164 (576)
T ss_pred CCeeeeeccCccCHHHH-HHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHH--cCCCCeEEEEEeCChhhhhH
Confidence 000 00001111121 1222222 2455588999997542 2333333332 2223455554 555444443
Q ss_pred c-cCCcceEEccCCCHHHHHHHHHHHhCCcccCCCccHHHHHHHHHHHhCCcc-hHHHHHHhhh
Q 002538 304 S-MEAHRNFKVECLTEKHAWELFQMKVGEETLKSHPHVFELAQVVAKECGGLP-LALITIGRAM 365 (911)
Q Consensus 304 ~-~~~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~GlP-Lai~~~g~~l 365 (911)
. .+....+++.+++.++....+...+...+.. --.+....|++.++|.. .|+..+-..+
T Consensus 165 tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~---i~~~al~~la~~a~G~lr~al~~Ldqli 225 (576)
T PRK14965 165 TILSRCQRFDFRRIPLQKIVDRLRYIADQEGIS---ISDAALALVARKGDGSMRDSLSTLDQVL 225 (576)
T ss_pred HHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCC---CCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 2 2334678899999999887777655432211 12466678889998865 4555554443
No 172
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.33 E-value=0.0034 Score=67.56 Aligned_cols=95 Identities=11% Similarity=0.064 Sum_probs=58.1
Q ss_pred cceEEEEEccccccc--ccccccCCCCCCCCCCCcEEEEEcCchhh-hh-ccCCcceEEccCCCHHHHHHHHHHHhCCcc
Q 002538 258 EKKFVLLLDDIWERV--NLNKVGVPLPSPQSTTASKVVFTTRFINV-CG-SMEAHRNFKVECLTEKHAWELFQMKVGEET 333 (911)
Q Consensus 258 ~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~gs~IivTtR~~~v-~~-~~~~~~~~~l~~L~~~es~~Lf~~~a~~~~ 333 (911)
+++-++|+|+++... ....+...+. ....++.+|+||.+.+. .. ..+-...+++.+++.+++.+.+.......
T Consensus 105 ~~~kv~iI~~a~~m~~~aaNaLLK~LE--EPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~~~~- 181 (328)
T PRK05707 105 GGRKVVLIEPAEAMNRNAANALLKSLE--EPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQALPES- 181 (328)
T ss_pred CCCeEEEECChhhCCHHHHHHHHHHHh--CCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhcccC-
Confidence 344456779998642 2333333333 22346667777766543 32 22345678999999999998887653111
Q ss_pred cCCCccHHHHHHHHHHHhCCcchHHHHH
Q 002538 334 LKSHPHVFELAQVVAKECGGLPLALITI 361 (911)
Q Consensus 334 ~~~~~~~~~~~~~i~~~c~GlPLai~~~ 361 (911)
..+.+..++..++|.|..+..+
T Consensus 182 ------~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 182 ------DERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred ------ChHHHHHHHHHcCCCHHHHHHH
Confidence 1244567789999999865544
No 173
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.31 E-value=0.0048 Score=71.19 Aligned_cols=171 Identities=16% Similarity=0.168 Sum_probs=90.2
Q ss_pred cccchHHHHHHHHHHhc---c---------CCceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCccChHH
Q 002538 157 IVKGLESTLEDVWRCLV---E---------ESAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDLQIEK 224 (911)
Q Consensus 157 ~~~Gr~~~~~~l~~~L~---~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~ 224 (911)
.+.|.+..++++.+.+. . ...+-+.++|++|+|||++|+.+++.. ...| +.++. ..
T Consensus 56 di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~---~~~~-----~~i~~----~~ 123 (495)
T TIGR01241 56 DVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA---GVPF-----FSISG----SD 123 (495)
T ss_pred HhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc---CCCe-----eeccH----HH
Confidence 45688877666554432 1 123458899999999999999999876 2222 22221 11
Q ss_pred HHHHHHHHcCCCCCccCCCCHHHHHHHHHHHhhcceEEEEEcccccccc------------cc----cccCCCCCCCCCC
Q 002538 225 NQEIIGKKIGLFDDSWKNKNLDERALEIFKILREKKFVLLLDDIWERVN------------LN----KVGVPLPSPQSTT 288 (911)
Q Consensus 225 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~~------------~~----~~~~~l~~~~~~~ 288 (911)
+.... . ......+...+.......+.+|+|||++.... +. .+...+.......
T Consensus 124 ~~~~~---~--------g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~ 192 (495)
T TIGR01241 124 FVEMF---V--------GVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNT 192 (495)
T ss_pred HHHHH---h--------cccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCC
Confidence 11110 0 11112222222333345678999999965310 00 1111111001223
Q ss_pred CcEEEEEcCchhhhh-cc----CCcceEEccCCCHHHHHHHHHHHhCCcccCCCccHHHHHHHHHHHhCCc
Q 002538 289 ASKVVFTTRFINVCG-SM----EAHRNFKVECLTEKHAWELFQMKVGEETLKSHPHVFELAQVVAKECGGL 354 (911)
Q Consensus 289 gs~IivTtR~~~v~~-~~----~~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~Gl 354 (911)
+-.||.||....... .+ .-+..+++...+.++-.++|+.++........ .....+++.+.|.
T Consensus 193 ~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~----~~l~~la~~t~G~ 259 (495)
T TIGR01241 193 GVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPD----VDLKAVARRTPGF 259 (495)
T ss_pred CeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcc----hhHHHHHHhCCCC
Confidence 445666776544321 11 23457889988988888888887654321111 1234677777774
No 174
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.31 E-value=0.01 Score=72.15 Aligned_cols=45 Identities=31% Similarity=0.345 Sum_probs=37.4
Q ss_pred cccchHHHHHHHHHHhcc------CCceEEEEEcCCCChHHHHHHHHHhhh
Q 002538 157 IVKGLESTLEDVWRCLVE------ESAGIIGLYGMGGVGKTTLLTRINNKF 201 (911)
Q Consensus 157 ~~~Gr~~~~~~l~~~L~~------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 201 (911)
.++|.++.++.|.+++.. .+.+++.++|++|+|||++|+.+++..
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l 371 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKAL 371 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 366999999999887642 244589999999999999999999987
No 175
>PRK08118 topology modulation protein; Reviewed
Probab=97.27 E-value=0.00017 Score=69.73 Aligned_cols=36 Identities=33% Similarity=0.570 Sum_probs=29.3
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEE
Q 002538 178 GIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIW 213 (911)
Q Consensus 178 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~w 213 (911)
+.|.|+|++|+||||||+.+++...-..-+||..+|
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 468899999999999999999997322356787776
No 176
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.21 E-value=0.0047 Score=68.57 Aligned_cols=163 Identities=18% Similarity=0.164 Sum_probs=95.6
Q ss_pred hHHHHHHHHHHhccCCceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCcc-ChHHHHHHHHHHcCCCCCc
Q 002538 161 LESTLEDVWRCLVEESAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDL-QIEKNQEIIGKKIGLFDDS 239 (911)
Q Consensus 161 r~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~ 239 (911)
+.....++++.+..... ++.|.|+-++||||+++.+.... .+. .+++..-+.. +...+
T Consensus 22 ~~~~~~~l~~~~~~~~~-i~~i~GpR~~GKTtll~~l~~~~---~~~---~iy~~~~d~~~~~~~l-------------- 80 (398)
T COG1373 22 RRKLLPRLIKKLDLRPF-IILILGPRQVGKTTLLKLLIKGL---LEE---IIYINFDDLRLDRIEL-------------- 80 (398)
T ss_pred HHhhhHHHHhhcccCCc-EEEEECCccccHHHHHHHHHhhC---Ccc---eEEEEecchhcchhhH--------------
Confidence 34455556655544433 99999999999999997776665 122 4444322211 11111
Q ss_pred cCCCCHHHHHHHHHHHhhcceEEEEEcccccccccccccCCCCCCCCCCCcEEEEEcCchhhhhc------cCCcceEEc
Q 002538 240 WKNKNLDERALEIFKILREKKFVLLLDDIWERVNLNKVGVPLPSPQSTTASKVVFTTRFINVCGS------MEAHRNFKV 313 (911)
Q Consensus 240 ~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~~~~~~~~~l~~~~~~~gs~IivTtR~~~v~~~------~~~~~~~~l 313 (911)
.+....+...-..++.+++||.|....+|+.....+. +.++. +|++|+-+...... .+-...+++
T Consensus 81 ------~d~~~~~~~~~~~~~~yifLDEIq~v~~W~~~lk~l~--d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l 151 (398)
T COG1373 81 ------LDLLRAYIELKEREKSYIFLDEIQNVPDWERALKYLY--DRGNL-DVLITGSSSSLLSKEISESLAGRGKDLEL 151 (398)
T ss_pred ------HHHHHHHHHhhccCCceEEEecccCchhHHHHHHHHH--ccccc-eEEEECCchhhhccchhhhcCCCceeEEE
Confidence 1111111111112778999999999999998777776 55555 89988877665322 123457899
Q ss_pred cCCCHHHHHHHHHHHhCCcccCCCccHHHHHHHHHHHhCCcchHHHH
Q 002538 314 ECLTEKHAWELFQMKVGEETLKSHPHVFELAQVVAKECGGLPLALIT 360 (911)
Q Consensus 314 ~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~ 360 (911)
.|||..|-..+-. ..... ... ...-+-.-..||.|-++..
T Consensus 152 ~PlSF~Efl~~~~-----~~~~~-~~~-~~~f~~Yl~~GGfP~~v~~ 191 (398)
T COG1373 152 YPLSFREFLKLKG-----EEIEP-SKL-ELLFEKYLETGGFPESVKA 191 (398)
T ss_pred CCCCHHHHHhhcc-----cccch-hHH-HHHHHHHHHhCCCcHHHhC
Confidence 9999999766543 10000 011 1122223356888887754
No 177
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.20 E-value=0.011 Score=63.15 Aligned_cols=194 Identities=14% Similarity=0.106 Sum_probs=106.1
Q ss_pred cccchHHHHHHHHHHhccCCc-eEEEEEcCCCChHHHHHHHHHhhhccCC-------------CCCceEEEEEeCCccCh
Q 002538 157 IVKGLESTLEDVWRCLVEESA-GIIGLYGMGGVGKTTLLTRINNKFLESP-------------SDFDCVIWVVVSKDLQI 222 (911)
Q Consensus 157 ~~~Gr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------~~f~~~~wv~~s~~~~~ 222 (911)
.++|.+..++.+.+.+..+++ +.+-++|..|+||+++|..+++...-.. .|-| ..|+.-....+-
T Consensus 5 ~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPD-l~~i~p~~~~~g 83 (314)
T PRK07399 5 NLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPD-LLWVEPTYQHQG 83 (314)
T ss_pred HhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCC-EEEEeccccccc
Confidence 467999999999999988775 7899999999999999999877752110 1112 233321100000
Q ss_pred HHHHHHHHHHcCCCCCccCCCCHHHHHHHHHHHh-----hcceEEEEEccccccc--ccccccCCCCCCCCCCCcEEEEE
Q 002538 223 EKNQEIIGKKIGLFDDSWKNKNLDERALEIFKIL-----REKKFVLLLDDIWERV--NLNKVGVPLPSPQSTTASKVVFT 295 (911)
Q Consensus 223 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L-----~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~gs~IivT 295 (911)
..+-.+-++..+........-..++ +..+.+.+ .+++-++|+|+++... ....+...+. ...++.-|++|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~I~id~-ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LE--EPp~~~fILi~ 160 (314)
T PRK07399 84 KLITASEAEEAGLKRKAPPQIRLEQ-IREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLE--EPGNGTLILIA 160 (314)
T ss_pred cccchhhhhhccccccccccCcHHH-HHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHh--CCCCCeEEEEE
Confidence 0000011111111000001112222 23344444 3566789999997542 2333333333 11233334444
Q ss_pred cCchhhhhc-cCCcceEEccCCCHHHHHHHHHHHhCCcccCCCccHHHHHHHHHHHhCCcchHHHH
Q 002538 296 TRFINVCGS-MEAHRNFKVECLTEKHAWELFQMKVGEETLKSHPHVFELAQVVAKECGGLPLALIT 360 (911)
Q Consensus 296 tR~~~v~~~-~~~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~ 360 (911)
+.-..+... .+....+++.++++++..+.+.+...... .......++..++|.|..+..
T Consensus 161 ~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~------~~~~~~~l~~~a~Gs~~~al~ 220 (314)
T PRK07399 161 PSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEI------LNINFPELLALAQGSPGAAIA 220 (314)
T ss_pred CChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhcccc------chhHHHHHHHHcCCCHHHHHH
Confidence 444344332 23456889999999999999987643211 111235788999999975543
No 178
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.19 E-value=0.0096 Score=59.71 Aligned_cols=46 Identities=24% Similarity=0.350 Sum_probs=36.7
Q ss_pred ccccchHHHHHHHHHHhc----cCCceEEEEEcCCCChHHHHHHHHHhhh
Q 002538 156 AIVKGLESTLEDVWRCLV----EESAGIIGLYGMGGVGKTTLLTRINNKF 201 (911)
Q Consensus 156 ~~~~Gr~~~~~~l~~~L~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 201 (911)
+.++|.+..++.+++-.. .....-+-+||..|.|||++++++.+.+
T Consensus 27 ~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y 76 (249)
T PF05673_consen 27 DDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEY 76 (249)
T ss_pred HHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHH
Confidence 345699999888865443 2355677799999999999999999987
No 179
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.19 E-value=4.9e-05 Score=67.42 Aligned_cols=87 Identities=26% Similarity=0.419 Sum_probs=79.1
Q ss_pred cceEEEeecCCcccCCC--CCCCCCccEEEcccCcccccChhhhccCCCCcEEEccCCCCcccCccccCcCCCCEEeccC
Q 002538 518 KVKRLLLMKNHIKHLPD--IPTCPHLLTLFLSHNQLRWISEDFFQFMPSLKVLNLSFTKRHKFPSGISKLASLQLIDLSY 595 (911)
Q Consensus 518 ~l~~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~L~~ 595 (911)
++..+++++|.++.+|. ...++.+++|++.+|.+..+|.. +..++.|+.|+++.|.+...|.-+..|.+|-+|+..+
T Consensus 54 el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE-~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~ 132 (177)
T KOG4579|consen 54 ELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEE-LAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPE 132 (177)
T ss_pred eEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHH-HhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCC
Confidence 67788999999998886 36778999999999999999998 8899999999999999999999998999999999999
Q ss_pred CCcCCcchhh
Q 002538 596 TSIRGLPEEL 605 (911)
Q Consensus 596 ~~i~~lp~~l 605 (911)
+.+..+|-.+
T Consensus 133 na~~eid~dl 142 (177)
T KOG4579|consen 133 NARAEIDVDL 142 (177)
T ss_pred CccccCcHHH
Confidence 9998888764
No 180
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.18 E-value=0.0013 Score=61.57 Aligned_cols=89 Identities=24% Similarity=0.175 Sum_probs=51.1
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCccChHHHHHHHHHHcCCCCCccCCCCHHHHHHHHHHHh
Q 002538 177 AGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDLQIEKNQEIIGKKIGLFDDSWKNKNLDERALEIFKIL 256 (911)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L 256 (911)
...+.|+|.+|+||||+|+.+++.. ......++++..+........... ....... ............+.+..
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~ 74 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALAREL---GPPGGGVIYIDGEDILEEVLDQLL-LIIVGGK---KASGSGELRLRLALALA 74 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhcc---CCCCCCEEEECCEEccccCHHHHH-hhhhhcc---CCCCCHHHHHHHHHHHH
Confidence 3578999999999999999999987 222234566655544332222211 0000000 01223333344555555
Q ss_pred hcce-EEEEEccccccc
Q 002538 257 REKK-FVLLLDDIWERV 272 (911)
Q Consensus 257 ~~k~-~LlVlDdv~~~~ 272 (911)
+..+ .+|++|++....
T Consensus 75 ~~~~~~viiiDei~~~~ 91 (148)
T smart00382 75 RKLKPDVLILDEITSLL 91 (148)
T ss_pred HhcCCCEEEEECCcccC
Confidence 5444 899999998754
No 181
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.17 E-value=0.00048 Score=65.61 Aligned_cols=122 Identities=20% Similarity=0.242 Sum_probs=68.8
Q ss_pred eEEEeecCCcccCCCC-CCCCCccEEEcccCcccccChhhhccCCCCcEEEccCCCCcccCcccc-CcCCCCEEeccCCC
Q 002538 520 KRLLLMKNHIKHLPDI-PTCPHLLTLFLSHNQLRWISEDFFQFMPSLKVLNLSFTKRHKFPSGIS-KLASLQLIDLSYTS 597 (911)
Q Consensus 520 ~~L~l~~~~~~~l~~~-~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~i~-~l~~L~~L~L~~~~ 597 (911)
+.+++.+..+..+..+ .-..+...++++.|.+..++. |+.++.|.+|.|++|.|+.+-+.+. -+++|..|.|.+|+
T Consensus 22 ~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~~l~~--lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs 99 (233)
T KOG1644|consen 22 RELDLRGLKIPVIENLGATLDQFDAIDLTDNDLRKLDN--LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS 99 (233)
T ss_pred cccccccccccchhhccccccccceecccccchhhccc--CCCccccceEEecCCcceeeccchhhhccccceEEecCcc
Confidence 3444444443333221 223455677777776655543 6677777777777777777744443 34567777777776
Q ss_pred cCCcc--hhhhccCcCcEEecCCCccccccC---hhhhccCccCcEEEecCC
Q 002538 598 IRGLP--EELKALINLKCLNLDQTKFLVTIP---RHLISSFSMLHVLRMFGS 644 (911)
Q Consensus 598 i~~lp--~~l~~L~~L~~L~L~~~~~l~~lp---~~~i~~l~~L~~L~l~~~ 644 (911)
|.++- ..+..+++|++|.+-+|+ +..-+ ..++.++++|+.|+..+.
T Consensus 100 i~~l~dl~pLa~~p~L~~Ltll~Np-v~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 100 IQELGDLDPLASCPKLEYLTLLGNP-VEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred hhhhhhcchhccCCccceeeecCCc-hhcccCceeEEEEecCcceEeehhhh
Confidence 66642 124455666666666665 22222 123455666666665543
No 182
>PRK10536 hypothetical protein; Provisional
Probab=97.16 E-value=0.0041 Score=63.12 Aligned_cols=135 Identities=14% Similarity=0.114 Sum_probs=74.5
Q ss_pred ccchHHHHHHHHHHhccCCceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEE----eCCc-----cChHH----
Q 002538 158 VKGLESTLEDVWRCLVEESAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVV----VSKD-----LQIEK---- 224 (911)
Q Consensus 158 ~~Gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~----~s~~-----~~~~~---- 224 (911)
+.++.......+.++.+. .++.+.|..|.|||+||.++..+. -..+.|+.++-+. +++. -+..+
T Consensus 57 i~p~n~~Q~~~l~al~~~--~lV~i~G~aGTGKT~La~a~a~~~-l~~~~~~kIiI~RP~v~~ge~LGfLPG~~~eK~~p 133 (262)
T PRK10536 57 ILARNEAQAHYLKAIESK--QLIFATGEAGCGKTWISAAKAAEA-LIHKDVDRIIVTRPVLQADEDLGFLPGDIAEKFAP 133 (262)
T ss_pred ccCCCHHHHHHHHHHhcC--CeEEEECCCCCCHHHHHHHHHHHH-HhcCCeeEEEEeCCCCCchhhhCcCCCCHHHHHHH
Confidence 558888888888888663 599999999999999999998864 1124455444332 1110 01111
Q ss_pred HHHHHHHHcCCCCCccCCCCHHHHHH--------HHHHHhhcceE---EEEEcccccccccccccCCCCCCCCCCCcEEE
Q 002538 225 NQEIIGKKIGLFDDSWKNKNLDERAL--------EIFKILREKKF---VLLLDDIWERVNLNKVGVPLPSPQSTTASKVV 293 (911)
Q Consensus 225 ~~~~i~~~l~~~~~~~~~~~~~~~~~--------~l~~~L~~k~~---LlVlDdv~~~~~~~~~~~~l~~~~~~~gs~Ii 293 (911)
.+.-+...+..-. .....+.... .=..+++|+.+ +||+|++.+... ..+...+. ..+.+|+||
T Consensus 134 ~~~pi~D~L~~~~---~~~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~-~~~k~~lt--R~g~~sk~v 207 (262)
T PRK10536 134 YFRPVYDVLVRRL---GASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTA-AQMKMFLT--RLGENVTVI 207 (262)
T ss_pred HHHHHHHHHHHHh---ChHHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCH-HHHHHHHh--hcCCCCEEE
Confidence 1222222221100 0001111100 01245667655 999999987643 22222223 456799999
Q ss_pred EEcCchhh
Q 002538 294 FTTRFINV 301 (911)
Q Consensus 294 vTtR~~~v 301 (911)
+|--..++
T Consensus 208 ~~GD~~Qi 215 (262)
T PRK10536 208 VNGDITQC 215 (262)
T ss_pred EeCChhhc
Confidence 98764443
No 183
>PRK08116 hypothetical protein; Validated
Probab=97.16 E-value=0.00056 Score=71.51 Aligned_cols=101 Identities=24% Similarity=0.222 Sum_probs=57.2
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCccChHHHHHHHHHHcCCCCCccCCCCHHHHHHHHHHHhh
Q 002538 178 GIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDLQIEKNQEIIGKKIGLFDDSWKNKNLDERALEIFKILR 257 (911)
Q Consensus 178 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~ 257 (911)
..+.++|..|+|||.||.++++... .....+++++ ..+++..+....... ...+ ...+.+.+.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~---~~~~~v~~~~------~~~ll~~i~~~~~~~----~~~~----~~~~~~~l~ 177 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELI---EKGVPVIFVN------FPQLLNRIKSTYKSS----GKED----ENEIIRSLV 177 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH---HcCCeEEEEE------HHHHHHHHHHHHhcc----cccc----HHHHHHHhc
Confidence 4588999999999999999999972 2234456664 344555555443221 1111 122334444
Q ss_pred cceEEEEEccccc--cccccc--ccCCCCCCCCCCCcEEEEEcC
Q 002538 258 EKKFVLLLDDIWE--RVNLNK--VGVPLPSPQSTTASKVVFTTR 297 (911)
Q Consensus 258 ~k~~LlVlDdv~~--~~~~~~--~~~~l~~~~~~~gs~IivTtR 297 (911)
+-. ||||||+.. ..+|.. +...+.. .-..|..+|+||.
T Consensus 178 ~~d-lLviDDlg~e~~t~~~~~~l~~iin~-r~~~~~~~IiTsN 219 (268)
T PRK08116 178 NAD-LLILDDLGAERDTEWAREKVYNIIDS-RYRKGLPTIVTTN 219 (268)
T ss_pred CCC-EEEEecccCCCCCHHHHHHHHHHHHH-HHHCCCCEEEECC
Confidence 333 899999943 233322 2211110 1124567999997
No 184
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.14 E-value=0.0065 Score=68.69 Aligned_cols=94 Identities=18% Similarity=0.283 Sum_probs=60.6
Q ss_pred cchHHHHHHHHHHhcc------CCceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCccChHHHHHHHHHH
Q 002538 159 KGLESTLEDVWRCLVE------ESAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDLQIEKNQEIIGKK 232 (911)
Q Consensus 159 ~Gr~~~~~~l~~~L~~------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 232 (911)
+|.++-+++|++++.- -+.+++.++|++|||||++|+.++... .+.| +-++|+.-.|..+|-.---..
T Consensus 414 Ygm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~AL---nRkF---fRfSvGG~tDvAeIkGHRRTY 487 (906)
T KOG2004|consen 414 YGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARAL---NRKF---FRFSVGGMTDVAEIKGHRRTY 487 (906)
T ss_pred cchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHh---CCce---EEEeccccccHHhhcccceee
Confidence 3999999999999853 267899999999999999999999987 2333 234555555554432111111
Q ss_pred cCCCCCccCCCCHHHHHHHHHHHhhc---ceEEEEEccccc
Q 002538 233 IGLFDDSWKNKNLDERALEIFKILRE---KKFVLLLDDIWE 270 (911)
Q Consensus 233 l~~~~~~~~~~~~~~~~~~l~~~L~~---k~~LlVlDdv~~ 270 (911)
+ ..+=.++.+.|+. ..=|+.||.|+.
T Consensus 488 V------------GAMPGkiIq~LK~v~t~NPliLiDEvDK 516 (906)
T KOG2004|consen 488 V------------GAMPGKIIQCLKKVKTENPLILIDEVDK 516 (906)
T ss_pred e------------ccCChHHHHHHHhhCCCCceEEeehhhh
Confidence 1 1111234444432 445888999865
No 185
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.10 E-value=0.003 Score=67.71 Aligned_cols=105 Identities=16% Similarity=0.126 Sum_probs=67.2
Q ss_pred HHHHHHHHhcc-CCceEEEEEcCCCChHHHHHHHHHhhhccCCCCCce-EEEEEeCCc-cChHHHHHHHHHHcCCCCCcc
Q 002538 164 TLEDVWRCLVE-ESAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDC-VIWVVVSKD-LQIEKNQEIIGKKIGLFDDSW 240 (911)
Q Consensus 164 ~~~~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~-~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~~ 240 (911)
...++++.+.. ++-..+.|+|..|+|||||++.+++... .++-+. ++|+.+.+. ....++++.+...+.....+.
T Consensus 119 ~~~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~--~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de 196 (380)
T PRK12608 119 LSMRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVA--ANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDR 196 (380)
T ss_pred hhHhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHH--hcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCC
Confidence 34557777764 4556779999999999999999998762 223344 467676664 467888888887766543110
Q ss_pred CCC---CHHHHHHHHHHHh--hcceEEEEEccccc
Q 002538 241 KNK---NLDERALEIFKIL--REKKFVLLLDDIWE 270 (911)
Q Consensus 241 ~~~---~~~~~~~~l~~~L--~~k~~LlVlDdv~~ 270 (911)
... ........+.+++ ++++++||+|++-.
T Consensus 197 ~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr 231 (380)
T PRK12608 197 PPDEHIRVAELVLERAKRLVEQGKDVVILLDSLTR 231 (380)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcHH
Confidence 110 1111222233333 58999999999954
No 186
>PRK07261 topology modulation protein; Provisional
Probab=97.09 E-value=0.0013 Score=63.86 Aligned_cols=66 Identities=20% Similarity=0.420 Sum_probs=42.6
Q ss_pred EEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCccChHHHHHHHHHHcCCCCCccCCCCHHHHHHHHHHHhhc
Q 002538 179 IIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDLQIEKNQEIIGKKIGLFDDSWKNKNLDERALEIFKILRE 258 (911)
Q Consensus 179 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~ 258 (911)
.|.|+|++|+||||||+.+.....-..-+.|...|-.. +...+.++....+...+.+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~ 58 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPN-----------------------WQERDDDDMIADISNFLLK 58 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEeccc-----------------------cccCCHHHHHHHHHHHHhC
Confidence 58899999999999999998775111224455555211 1233455566666667766
Q ss_pred ceEEEEEcccc
Q 002538 259 KKFVLLLDDIW 269 (911)
Q Consensus 259 k~~LlVlDdv~ 269 (911)
.+ .|+|+..
T Consensus 59 ~~--wIidg~~ 67 (171)
T PRK07261 59 HD--WIIDGNY 67 (171)
T ss_pred CC--EEEcCcc
Confidence 66 5777764
No 187
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.08 E-value=0.015 Score=61.94 Aligned_cols=181 Identities=11% Similarity=0.060 Sum_probs=95.2
Q ss_pred HHHHHHHHHHhccCCce-EEEEEcCCCChHHHHHHHHHhhhccCCCCCce-----EEEEEeCCccChHHHHHHHHHHcCC
Q 002538 162 ESTLEDVWRCLVEESAG-IIGLYGMGGVGKTTLLTRINNKFLESPSDFDC-----VIWVVVSKDLQIEKNQEIIGKKIGL 235 (911)
Q Consensus 162 ~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~-----~~wv~~s~~~~~~~~~~~i~~~l~~ 235 (911)
+...+.+.+.+..++++ .+.+.|+.|+||+++|..+++...- .....+ +-|+..+..+|...+. ..
T Consensus 10 ~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC-~~~~~~~~c~~c~~~~~g~HPD~~~i~-------~~ 81 (319)
T PRK08769 10 QRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLA-SGPDPAAAQRTRQLIAAGTHPDLQLVS-------FI 81 (319)
T ss_pred HHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhC-CCCCCCCcchHHHHHhcCCCCCEEEEe-------cC
Confidence 34466677777776665 5889999999999999998876521 110100 0000000000000000 00
Q ss_pred CCCcc----CCCCHHHHHHHHHHHh-----hcceEEEEEccccccc--ccccccCCCCCCCCCCCcEEEEEcCc-hhhhh
Q 002538 236 FDDSW----KNKNLDERALEIFKIL-----REKKFVLLLDDIWERV--NLNKVGVPLPSPQSTTASKVVFTTRF-INVCG 303 (911)
Q Consensus 236 ~~~~~----~~~~~~~~~~~l~~~L-----~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~gs~IivTtR~-~~v~~ 303 (911)
+.+.. .....++ +..+.+.+ .+++-++|+|+++... .-..+...+. ....++.+|++|.+ ..+..
T Consensus 82 p~~~~~k~~~~I~idq-IR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLE--EPp~~~~fiL~~~~~~~lLp 158 (319)
T PRK08769 82 PNRTGDKLRTEIVIEQ-VREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLE--EPSPGRYLWLISAQPARLPA 158 (319)
T ss_pred CCcccccccccccHHH-HHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhh--CCCCCCeEEEEECChhhCch
Confidence 00000 0011222 22333333 2456699999997642 2222222222 22335666666654 34432
Q ss_pred c-cCCcceEEccCCCHHHHHHHHHHHhCCcccCCCccHHHHHHHHHHHhCCcchHHHHHH
Q 002538 304 S-MEAHRNFKVECLTEKHAWELFQMKVGEETLKSHPHVFELAQVVAKECGGLPLALITIG 362 (911)
Q Consensus 304 ~-~~~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~g 362 (911)
. .+-...+.+.+++.+++.+.+... +.+ ...+..++..++|.|+.+..+.
T Consensus 159 TIrSRCq~i~~~~~~~~~~~~~L~~~-~~~--------~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 159 TIRSRCQRLEFKLPPAHEALAWLLAQ-GVS--------ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred HHHhhheEeeCCCcCHHHHHHHHHHc-CCC--------hHHHHHHHHHcCCCHHHHHHHh
Confidence 2 234567899999999998888653 111 2336678999999998665444
No 188
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.06 E-value=0.012 Score=63.77 Aligned_cols=143 Identities=9% Similarity=0.057 Sum_probs=83.0
Q ss_pred ccc-hHHHHHHHHHHhccCCce-EEEEEcCCCChHHHHHHHHHhhhccCCC--------------------CCceEEEEE
Q 002538 158 VKG-LESTLEDVWRCLVEESAG-IIGLYGMGGVGKTTLLTRINNKFLESPS--------------------DFDCVIWVV 215 (911)
Q Consensus 158 ~~G-r~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~--------------------~f~~~~wv~ 215 (911)
++| -+..++.+.+.+..++++ .+-++|+.|+||||+|+.+.+...- .. |.|......
T Consensus 7 i~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c-~~~~~~~~cg~C~~c~~~~~~~hpD~~~i~~ 85 (329)
T PRK08058 7 LTALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFC-LERNGVEPCGTCTNCKRIDSGNHPDVHLVAP 85 (329)
T ss_pred HHhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCC-CCCCCCCCCCcCHHHHHHhcCCCCCEEEecc
Confidence 446 677778888888777655 5689999999999999999877521 11 112111111
Q ss_pred eCCccChHHHHHHHHHHcCCCCCccCCCCHHHHHHHHHHH-----hhcceEEEEEccccccc--ccccccCCCCCCCCCC
Q 002538 216 VSKDLQIEKNQEIIGKKIGLFDDSWKNKNLDERALEIFKI-----LREKKFVLLLDDIWERV--NLNKVGVPLPSPQSTT 288 (911)
Q Consensus 216 ~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~-----L~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~ 288 (911)
.+. ....+++... .+. ..+.+=++|+|++.... ....+...+. ....
T Consensus 86 ~~~-----------------------~i~id~ir~l-~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LE--EPp~ 139 (329)
T PRK08058 86 DGQ-----------------------SIKKDQIRYL-KEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLE--EPSG 139 (329)
T ss_pred ccc-----------------------cCCHHHHHHH-HHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhc--CCCC
Confidence 011 1122222222 222 23455679999997542 2233333333 2334
Q ss_pred CcEEEEEcCchh-hhhc-cCCcceEEccCCCHHHHHHHHHH
Q 002538 289 ASKVVFTTRFIN-VCGS-MEAHRNFKVECLTEKHAWELFQM 327 (911)
Q Consensus 289 gs~IivTtR~~~-v~~~-~~~~~~~~l~~L~~~es~~Lf~~ 327 (911)
++.+|++|.+.. +... -+....+++.+++.++..+.+..
T Consensus 140 ~~~~Il~t~~~~~ll~TIrSRc~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 140 GTTAILLTENKHQILPTILSRCQVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred CceEEEEeCChHhCcHHHHhhceeeeCCCCCHHHHHHHHHH
Confidence 666776665543 3222 23456889999999999887765
No 189
>CHL00176 ftsH cell division protein; Validated
Probab=97.05 E-value=0.0056 Score=71.66 Aligned_cols=170 Identities=15% Similarity=0.180 Sum_probs=92.5
Q ss_pred cccchHHHHHHHHH---HhccC---------CceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCccChHH
Q 002538 157 IVKGLESTLEDVWR---CLVEE---------SAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDLQIEK 224 (911)
Q Consensus 157 ~~~Gr~~~~~~l~~---~L~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~ 224 (911)
.+.|.++.++++.+ .+... ..+-|.++|++|+|||++|+.+++.. ... ++.++.. .
T Consensus 184 dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~---~~p-----~i~is~s----~ 251 (638)
T CHL00176 184 DIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA---EVP-----FFSISGS----E 251 (638)
T ss_pred hccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHh---CCC-----eeeccHH----H
Confidence 35688776655544 33321 23468899999999999999999875 222 2222211 1
Q ss_pred HHHHHHHHcCCCCCccCCCCHHHHHHHHHHHhhcceEEEEEccccccc------------c----cccccCCCCCCCCCC
Q 002538 225 NQEIIGKKIGLFDDSWKNKNLDERALEIFKILREKKFVLLLDDIWERV------------N----LNKVGVPLPSPQSTT 288 (911)
Q Consensus 225 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~------------~----~~~~~~~l~~~~~~~ 288 (911)
+.... . ......+...+.....+.+.+|++||++... . +..+...+.......
T Consensus 252 f~~~~---~--------g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~ 320 (638)
T CHL00176 252 FVEMF---V--------GVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNK 320 (638)
T ss_pred HHHHh---h--------hhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCC
Confidence 11100 0 0111122223333445678999999996431 0 111111111001234
Q ss_pred CcEEEEEcCchhhhhc-c----CCcceEEccCCCHHHHHHHHHHHhCCcccCCCccHHHHHHHHHHHhCC
Q 002538 289 ASKVVFTTRFINVCGS-M----EAHRNFKVECLTEKHAWELFQMKVGEETLKSHPHVFELAQVVAKECGG 353 (911)
Q Consensus 289 gs~IivTtR~~~v~~~-~----~~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~G 353 (911)
+-.||.||...+.... + .-+..+.+...+.++-.++++.++...... .......+++.+.|
T Consensus 321 ~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~----~d~~l~~lA~~t~G 386 (638)
T CHL00176 321 GVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLS----PDVSLELIARRTPG 386 (638)
T ss_pred CeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccc----hhHHHHHHHhcCCC
Confidence 5567777766554221 1 124578888889999889998877542211 12334667777777
No 190
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.01 E-value=0.0029 Score=73.49 Aligned_cols=45 Identities=20% Similarity=0.299 Sum_probs=37.8
Q ss_pred cccchHHHHHHHHHHhccC-----CceEEEEEcCCCChHHHHHHHHHhhh
Q 002538 157 IVKGLESTLEDVWRCLVEE-----SAGIIGLYGMGGVGKTTLLTRINNKF 201 (911)
Q Consensus 157 ~~~Gr~~~~~~l~~~L~~~-----~~~vi~I~G~gGiGKTtLa~~v~~~~ 201 (911)
.++|-++.++++..++... ..+++.|+|++|+||||+++.++...
T Consensus 85 el~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l 134 (637)
T TIGR00602 85 ELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKEL 134 (637)
T ss_pred HhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3669999999999888652 34579999999999999999998875
No 191
>PRK12377 putative replication protein; Provisional
Probab=96.99 E-value=0.0019 Score=66.31 Aligned_cols=75 Identities=24% Similarity=0.248 Sum_probs=45.9
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCccChHHHHHHHHHHcCCCCCccCCCCHHHHHHHHHHH
Q 002538 176 SAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDLQIEKNQEIIGKKIGLFDDSWKNKNLDERALEIFKI 255 (911)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 255 (911)
+...+.++|..|+|||+||.++++... .....++++++. ++...+...... ..... .+.+.
T Consensus 100 ~~~~l~l~G~~GtGKThLa~AIa~~l~---~~g~~v~~i~~~------~l~~~l~~~~~~------~~~~~----~~l~~ 160 (248)
T PRK12377 100 GCTNFVFSGKPGTGKNHLAAAIGNRLL---AKGRSVIVVTVP------DVMSRLHESYDN------GQSGE----KFLQE 160 (248)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCCeEEEEHH------HHHHHHHHHHhc------cchHH----HHHHH
Confidence 346789999999999999999999972 233345666543 444444433211 11111 12222
Q ss_pred hhcceEEEEEccccc
Q 002538 256 LREKKFVLLLDDIWE 270 (911)
Q Consensus 256 L~~k~~LlVlDdv~~ 270 (911)
+ .+--||||||+..
T Consensus 161 l-~~~dLLiIDDlg~ 174 (248)
T PRK12377 161 L-CKVDLLVLDEIGI 174 (248)
T ss_pred h-cCCCEEEEcCCCC
Confidence 2 3556999999943
No 192
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=96.99 E-value=0.0015 Score=60.54 Aligned_cols=22 Identities=41% Similarity=0.463 Sum_probs=20.6
Q ss_pred EEEEcCCCChHHHHHHHHHhhh
Q 002538 180 IGLYGMGGVGKTTLLTRINNKF 201 (911)
Q Consensus 180 i~I~G~gGiGKTtLa~~v~~~~ 201 (911)
|.|+|.+|+||||+|+.+++..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhc
Confidence 5689999999999999999997
No 193
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.94 E-value=0.002 Score=65.02 Aligned_cols=36 Identities=25% Similarity=0.364 Sum_probs=30.2
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEe
Q 002538 178 GIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVV 216 (911)
Q Consensus 178 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~ 216 (911)
-.++|+|..|.||||++..+.... ...|..+++++-
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~~---~~~f~~I~l~t~ 49 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYYL---RHKFDHIFLITP 49 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhh---cccCCEEEEEec
Confidence 367799999999999999999876 678888877754
No 194
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.92 E-value=0.0065 Score=58.33 Aligned_cols=137 Identities=17% Similarity=0.128 Sum_probs=70.9
Q ss_pred chHHHHHHHHHHhccCCce-EEEEEcCCCChHHHHHHHHHhhhccCCCC-----------------CceEEEEEeCCc--
Q 002538 160 GLESTLEDVWRCLVEESAG-IIGLYGMGGVGKTTLLTRINNKFLESPSD-----------------FDCVIWVVVSKD-- 219 (911)
Q Consensus 160 Gr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~~-----------------f~~~~wv~~s~~-- 219 (911)
|-+...+.+.+.+..++.+ .+-++|..|+||+|+|..+++...-.... ..-..|+.-...
T Consensus 1 gq~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~ 80 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKK 80 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSS
T ss_pred CcHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccc
Confidence 5566777888888777665 67899999999999999988875211111 112233322211
Q ss_pred -cChHHHHHHHHHHcCCCCCccCCCCHHHHHHHHHHHhhcceEEEEEcccccc--cccccccCCCCCCCCCCCcEEEEEc
Q 002538 220 -LQIEKNQEIIGKKIGLFDDSWKNKNLDERALEIFKILREKKFVLLLDDIWER--VNLNKVGVPLPSPQSTTASKVVFTT 296 (911)
Q Consensus 220 -~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~gs~IivTt 296 (911)
...+++. .+...+.... ..+++=++|+||++.. .....+...+. ....++++|++|
T Consensus 81 ~i~i~~ir-~i~~~~~~~~------------------~~~~~KviiI~~ad~l~~~a~NaLLK~LE--epp~~~~fiL~t 139 (162)
T PF13177_consen 81 SIKIDQIR-EIIEFLSLSP------------------SEGKYKVIIIDEADKLTEEAQNALLKTLE--EPPENTYFILIT 139 (162)
T ss_dssp SBSHHHHH-HHHHHCTSS-------------------TTSSSEEEEEETGGGS-HHHHHHHHHHHH--STTTTEEEEEEE
T ss_pred hhhHHHHH-HHHHHHHHHH------------------hcCCceEEEeehHhhhhHHHHHHHHHHhc--CCCCCEEEEEEE
Confidence 2222222 2222222111 1235668999999864 23333333333 334578888888
Q ss_pred Cchhh-h-hccCCcceEEccCCC
Q 002538 297 RFINV-C-GSMEAHRNFKVECLT 317 (911)
Q Consensus 297 R~~~v-~-~~~~~~~~~~l~~L~ 317 (911)
++.+- . ...+-...+.+.++|
T Consensus 140 ~~~~~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 140 NNPSKILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp S-GGGS-HHHHTTSEEEEE----
T ss_pred CChHHChHHHHhhceEEecCCCC
Confidence 76653 2 222334566666654
No 195
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.90 E-value=0.022 Score=68.62 Aligned_cols=46 Identities=30% Similarity=0.315 Sum_probs=38.8
Q ss_pred ccccchHHHHHHHHHHhcc------CCceEEEEEcCCCChHHHHHHHHHhhh
Q 002538 156 AIVKGLESTLEDVWRCLVE------ESAGIIGLYGMGGVGKTTLLTRINNKF 201 (911)
Q Consensus 156 ~~~~Gr~~~~~~l~~~L~~------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 201 (911)
...+|.++-++.|+++|.. ....++.++|++|+||||+|+.++...
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l 373 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKAT 373 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 3356999999999988863 245689999999999999999999876
No 196
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=96.89 E-value=0.039 Score=58.97 Aligned_cols=174 Identities=11% Similarity=0.088 Sum_probs=93.3
Q ss_pred HHHHHHHHHhccCCc-eEEEEEcCCCChHHHHHHHHHhhhccCCCCCce--------EEEEEeCCccChHHHHHHHHHHc
Q 002538 163 STLEDVWRCLVEESA-GIIGLYGMGGVGKTTLLTRINNKFLESPSDFDC--------VIWVVVSKDLQIEKNQEIIGKKI 233 (911)
Q Consensus 163 ~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~--------~~wv~~s~~~~~~~~~~~i~~~l 233 (911)
...+.+.+.+..+++ ..+-+.|+.|+||+++|+.+++...- ...... +-++..+..+|...+
T Consensus 9 ~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC-~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i-------- 79 (325)
T PRK06871 9 PTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMC-QTPQGDQPCGQCHSCHLFQAGNHPDFHIL-------- 79 (325)
T ss_pred HHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcC-CCCCCCCCCCCCHHHHHHhcCCCCCEEEE--------
Confidence 345566777766654 46779999999999999999877521 110100 000000011111000
Q ss_pred CCCCCccCCCCHHHHHHHHHHHh-----hcceEEEEEccccccc--ccccccCCCCCCCCCCCcEEEEEcCch-hhhhc-
Q 002538 234 GLFDDSWKNKNLDERALEIFKIL-----REKKFVLLLDDIWERV--NLNKVGVPLPSPQSTTASKVVFTTRFI-NVCGS- 304 (911)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~l~~~L-----~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~gs~IivTtR~~-~v~~~- 304 (911)
. +.+ ......+++. .+.+.+ .+++=++|+|+++... ....+...+. ....++.+|++|.+. .+...
T Consensus 80 ~-p~~-~~~I~id~iR-~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLE--EPp~~~~fiL~t~~~~~llpTI 154 (325)
T PRK06871 80 E-PID-NKDIGVDQVR-EINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLE--EPRPNTYFLLQADLSAALLPTI 154 (325)
T ss_pred c-ccc-CCCCCHHHHH-HHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhc--CCCCCeEEEEEECChHhCchHH
Confidence 0 000 0111222222 233333 3566688899997642 2333333333 223456666666544 44422
Q ss_pred cCCcceEEccCCCHHHHHHHHHHHhCCcccCCCccHHHHHHHHHHHhCCcchHH
Q 002538 305 MEAHRNFKVECLTEKHAWELFQMKVGEETLKSHPHVFELAQVVAKECGGLPLAL 358 (911)
Q Consensus 305 ~~~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~GlPLai 358 (911)
.+-...+.+.+++.++..+.+....... ...+...+..++|.|..+
T Consensus 155 ~SRC~~~~~~~~~~~~~~~~L~~~~~~~--------~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 155 YSRCQTWLIHPPEEQQALDWLQAQSSAE--------ISEILTALRINYGRPLLA 200 (325)
T ss_pred HhhceEEeCCCCCHHHHHHHHHHHhccC--------hHHHHHHHHHcCCCHHHH
Confidence 3345689999999999998887754211 123556788999999744
No 197
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.82 E-value=0.0014 Score=64.62 Aligned_cols=128 Identities=16% Similarity=0.172 Sum_probs=63.2
Q ss_pred chHHHHHHHHHHhccCCceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeC----CccC--hHH-------HH
Q 002538 160 GLESTLEDVWRCLVEESAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVS----KDLQ--IEK-------NQ 226 (911)
Q Consensus 160 Gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s----~~~~--~~~-------~~ 226 (911)
.+..+-...++.|. ...++.+.|++|.|||.||.+.+-+. -..+.++.++++.-. ++.. +-. ..
T Consensus 4 p~~~~Q~~~~~al~--~~~~v~~~G~AGTGKT~LA~a~Al~~-v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~~ 80 (205)
T PF02562_consen 4 PKNEEQKFALDALL--NNDLVIVNGPAGTGKTFLALAAALEL-VKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPYL 80 (205)
T ss_dssp --SHHHHHHHHHHH--H-SEEEEE--TTSSTTHHHHHHHHHH-HHTTS-SEEEEEE-S--TT----SS---------TTT
T ss_pred CCCHHHHHHHHHHH--hCCeEEEECCCCCcHHHHHHHHHHHH-HHhCCCcEEEEEecCCCCccccccCCCCHHHHHHHHH
Confidence 34445555666666 56799999999999999999988776 345888888887421 1110 000 11
Q ss_pred HHHHHHcCCCCCccCCCCHHHHHHH------HHHHhhcc---eEEEEEcccccc--cccccccCCCCCCCCCCCcEEEEE
Q 002538 227 EIIGKKIGLFDDSWKNKNLDERALE------IFKILREK---KFVLLLDDIWER--VNLNKVGVPLPSPQSTTASKVVFT 295 (911)
Q Consensus 227 ~~i~~~l~~~~~~~~~~~~~~~~~~------l~~~L~~k---~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~gs~IivT 295 (911)
.-+...+..-. .....+.+... -..+++|+ ..+||+|++.+. .++..+.. ..+.|||||++
T Consensus 81 ~p~~d~l~~~~---~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilT-----R~g~~skii~~ 152 (205)
T PF02562_consen 81 RPIYDALEELF---GKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILT-----RIGEGSKIIIT 152 (205)
T ss_dssp HHHHHHHTTTS----TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHT-----TB-TT-EEEEE
T ss_pred HHHHHHHHHHh---ChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHc-----ccCCCcEEEEe
Confidence 11122221100 11222222211 01344454 459999999875 35555533 45679999998
Q ss_pred cCc
Q 002538 296 TRF 298 (911)
Q Consensus 296 tR~ 298 (911)
--.
T Consensus 153 GD~ 155 (205)
T PF02562_consen 153 GDP 155 (205)
T ss_dssp E--
T ss_pred cCc
Confidence 653
No 198
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.81 E-value=0.00011 Score=73.03 Aligned_cols=100 Identities=26% Similarity=0.250 Sum_probs=74.0
Q ss_pred CCCccEEEcccCcccccChhhhccCCCCcEEEccCCCCcccCccccCcCCCCEEeccCCCcCCcch--hhhccCcCcEEe
Q 002538 538 CPHLLTLFLSHNQLRWISEDFFQFMPSLKVLNLSFTKRHKFPSGISKLASLQLIDLSYTSIRGLPE--ELKALINLKCLN 615 (911)
Q Consensus 538 ~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~--~l~~L~~L~~L~ 615 (911)
+.+.+.|++.||.+..+. +...|+.|.+|.||-|+|+.+- .+..|++|+.|.|+.|.|.++-. .+.++++|+.|.
T Consensus 18 l~~vkKLNcwg~~L~DIs--ic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDIS--ICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHHhhhhcccCCCccHHH--HHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence 456677888888777664 3577999999999999988875 57788899999999988877533 467888888888
Q ss_pred cCCCccccccCh----hhhccCccCcEEE
Q 002538 616 LDQTKFLVTIPR----HLISSFSMLHVLR 640 (911)
Q Consensus 616 L~~~~~l~~lp~----~~i~~l~~L~~L~ 640 (911)
|..|+-.+.-+. .++.-|++|+.|+
T Consensus 95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 95 LDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hccCCcccccchhHHHHHHHHcccchhcc
Confidence 887764444442 2355677777775
No 199
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.80 E-value=0.00016 Score=83.92 Aligned_cols=220 Identities=18% Similarity=0.152 Sum_probs=106.0
Q ss_pred hccCcCcEEecCCCccccccC-hhhhccCccCcEEEecCC-CCCcccccCCCcccccCcccchhhhcCCCCCcEEEEEec
Q 002538 606 KALINLKCLNLDQTKFLVTIP-RHLISSFSMLHVLRMFGS-GSSVFHEASGDSILFDGGELLADELLGLKYLEVLDITLR 683 (911)
Q Consensus 606 ~~L~~L~~L~L~~~~~l~~lp-~~~i~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~ 683 (911)
...++|+.|.+.+|..+.... ......+++|+.|++.++ .... ............+++|+.|+++..
T Consensus 185 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-----------~~~~~~~~~~~~~~~L~~l~l~~~ 253 (482)
T KOG1947|consen 185 SSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLIT-----------LSPLLLLLLLSICRKLKSLDLSGC 253 (482)
T ss_pred hhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccc-----------cchhHhhhhhhhcCCcCccchhhh
Confidence 346889999998886655522 123678889999998873 2110 001112234556677777777755
Q ss_pred CchhhHhhhhcccccCcceEEEeeeccCCCceeec-ccccccccceEeeccccccceeEecccCccccccccccCCccCE
Q 002538 684 SRHALQSVLSSHKLRSCTQAIFLQCFKDSKSIYAA-ALADLKHLKKLCISQCEELEELKIDCTGEVKRMCQPYIFRSLNK 762 (911)
Q Consensus 684 ~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ 762 (911)
...+-..+......++.++.|.+..|..+++.... ....+++|++|++++|..+..-...... ..+++|+.
T Consensus 254 ~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~--------~~c~~l~~ 325 (482)
T KOG1947|consen 254 GLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALL--------KNCPNLRE 325 (482)
T ss_pred hccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHH--------HhCcchhh
Confidence 42221222222222456666666555543332221 2234566777777666655321111111 22555555
Q ss_pred EEEecCCC---CCCCcc--cccCC--CcceEeEecccccccccccCcchhhhhhcCCCCcccccc-eecccccccc-ccc
Q 002538 763 VQIYSCPV---LKDLTF--LVFAP--NLKSIDVRSCSVMKEIVSAGKSADIAEMMGNMSPFAKLQ-NLQLVRLQNL-KSI 833 (911)
Q Consensus 763 L~L~~c~~---l~~l~~--l~~l~--~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~p~L~-~L~L~~~~~L-~~~ 833 (911)
|.+..+.. ++.+.. +.... .+..+.+.+|+.++++.- .... ..... .+.+.+|+.+ ..+
T Consensus 326 l~~~~~~~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l-----------~~~~-~~~~~~~~~l~gc~~l~~~l 393 (482)
T KOG1947|consen 326 LKLLSLNGCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSL-----------SYCG-ISDLGLELSLRGCPNLTESL 393 (482)
T ss_pred hhhhhcCCCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhh-----------hhhh-ccCcchHHHhcCCcccchHH
Confidence 55444433 222111 11111 455555555555554311 0011 12222 4555666666 333
Q ss_pred cCCcccCCccceEeccccccccC
Q 002538 834 YWKLVPFPHLKEIIVHQCNWLKK 856 (911)
Q Consensus 834 ~~~~~~~p~L~~L~i~~C~~L~~ 856 (911)
..-...++.|+.|.+..|...+.
T Consensus 394 ~~~~~~~~~l~~L~l~~~~~~t~ 416 (482)
T KOG1947|consen 394 ELRLCRSDSLRVLNLSDCRLVTD 416 (482)
T ss_pred HHHhccCCccceEecccCccccc
Confidence 22223344478888887766554
No 200
>PHA00729 NTP-binding motif containing protein
Probab=96.77 E-value=0.0053 Score=61.27 Aligned_cols=36 Identities=17% Similarity=0.255 Sum_probs=29.6
Q ss_pred HHHHHHhccCCceEEEEEcCCCChHHHHHHHHHhhh
Q 002538 166 EDVWRCLVEESAGIIGLYGMGGVGKTTLLTRINNKF 201 (911)
Q Consensus 166 ~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 201 (911)
.++++.+...+...|.|.|.+|+||||||..+.+..
T Consensus 6 k~~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~l 41 (226)
T PHA00729 6 KKIVSAYNNNGFVSAVIFGKQGSGKTTYALKVARDV 41 (226)
T ss_pred HHHHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHHH
Confidence 345566666667789999999999999999999875
No 201
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=96.76 E-value=0.0037 Score=60.82 Aligned_cols=91 Identities=21% Similarity=0.176 Sum_probs=62.6
Q ss_pred cccchHHHHHHHHHHhccCCceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCccChHHHHHHHHHHcCCC
Q 002538 157 IVKGLESTLEDVWRCLVEESAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDLQIEKNQEIIGKKIGLF 236 (911)
Q Consensus 157 ~~~Gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~ 236 (911)
.+||-++.++.+--...+++.+-+.|.||+|+||||-+..+++... ....-+.+.-...|+.-.+..+
T Consensus 28 dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~LL-G~~~ke~vLELNASdeRGIDvV----------- 95 (333)
T KOG0991|consen 28 DIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLARELL-GDSYKEAVLELNASDERGIDVV----------- 95 (333)
T ss_pred HhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHHh-ChhhhhHhhhccCccccccHHH-----------
Confidence 3679999999988777888999999999999999999999888862 2223344444444444333333
Q ss_pred CCccCCCCHHHHHHHHHHHh-------hcceEEEEEcccccc
Q 002538 237 DDSWKNKNLDERALEIFKIL-------REKKFVLLLDDIWER 271 (911)
Q Consensus 237 ~~~~~~~~~~~~~~~l~~~L-------~~k~~LlVlDdv~~~ 271 (911)
..++..+- .++.-.+|||+.++.
T Consensus 96 ------------Rn~IK~FAQ~kv~lp~grhKIiILDEADSM 125 (333)
T KOG0991|consen 96 ------------RNKIKMFAQKKVTLPPGRHKIIILDEADSM 125 (333)
T ss_pred ------------HHHHHHHHHhhccCCCCceeEEEeeccchh
Confidence 23332222 255668999999864
No 202
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.76 E-value=0.021 Score=61.30 Aligned_cols=37 Identities=30% Similarity=0.412 Sum_probs=28.9
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEe
Q 002538 177 AGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVV 216 (911)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~ 216 (911)
...+.++|..|+|||.||.++++... ... ..++++++
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~--~~g-~~V~y~t~ 219 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELL--DRG-KSVIYRTA 219 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHH--HCC-CeEEEEEH
Confidence 37799999999999999999999872 222 35667654
No 203
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=96.75 E-value=0.012 Score=66.98 Aligned_cols=152 Identities=24% Similarity=0.257 Sum_probs=86.3
Q ss_pred cchHHHHHHHHHHhcc------CCceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCccChHHHHHHHHHH
Q 002538 159 KGLESTLEDVWRCLVE------ESAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDLQIEKNQEIIGKK 232 (911)
Q Consensus 159 ~Gr~~~~~~l~~~L~~------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 232 (911)
+|.++-+++|+++|.- -+.+++.+||++|+|||+|++.+++.. .+.| +-+.++.--|..++-.-=-..
T Consensus 326 YGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al---~Rkf---vR~sLGGvrDEAEIRGHRRTY 399 (782)
T COG0466 326 YGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKAL---GRKF---VRISLGGVRDEAEIRGHRRTY 399 (782)
T ss_pred cCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHh---CCCE---EEEecCccccHHHhccccccc
Confidence 4999999999999852 256899999999999999999999987 3444 223344333333321100000
Q ss_pred cCCCCCccCCCCHHHHHHHHHHHh---hcceEEEEEccccccc---------ccccccCC-----CC----CCCCCCCcE
Q 002538 233 IGLFDDSWKNKNLDERALEIFKIL---REKKFVLLLDDIWERV---------NLNKVGVP-----LP----SPQSTTASK 291 (911)
Q Consensus 233 l~~~~~~~~~~~~~~~~~~l~~~L---~~k~~LlVlDdv~~~~---------~~~~~~~~-----l~----~~~~~~gs~ 291 (911)
++ .+=.++.+-+ +.+.=|++||.|+... .+-++..| |. . -.--=|+
T Consensus 400 IG------------amPGrIiQ~mkka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLe-v~yDLS~ 466 (782)
T COG0466 400 IG------------AMPGKIIQGMKKAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLE-VPYDLSK 466 (782)
T ss_pred cc------------cCChHHHHHHHHhCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhcccc-Cccchhh
Confidence 11 0111222222 3356689999997531 11111111 00 0 0011355
Q ss_pred EEE-EcC-chh-h-hhccCCcceEEccCCCHHHHHHHHHHHh
Q 002538 292 VVF-TTR-FIN-V-CGSMEAHRNFKVECLTEKHAWELFQMKV 329 (911)
Q Consensus 292 Iiv-TtR-~~~-v-~~~~~~~~~~~l~~L~~~es~~Lf~~~a 329 (911)
|++ ||- +-+ + ..-+....++++.+.+++|=.++-+++.
T Consensus 467 VmFiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 467 VMFIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred eEEEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 654 333 222 1 1223445789999999999888877765
No 204
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.68 E-value=0.0008 Score=67.10 Aligned_cols=106 Identities=25% Similarity=0.255 Sum_probs=58.4
Q ss_pred CCCCCccEEEcccCcccccChhhhccCCCCcEEEccCC--CCc-ccCccccCcCCCCEEeccCCCcCCc--chhhhccCc
Q 002538 536 PTCPHLLTLFLSHNQLRWISEDFFQFMPSLKVLNLSFT--KRH-KFPSGISKLASLQLIDLSYTSIRGL--PEELKALIN 610 (911)
Q Consensus 536 ~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~--~~~-~lp~~i~~l~~L~~L~L~~~~i~~l--p~~l~~L~~ 610 (911)
..+..|..|.+.++.++.+.. |..+++|+.|+++.| .+. .++.....+++|++|++++|+++.+ -..+..+.+
T Consensus 40 d~~~~le~ls~~n~gltt~~~--~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~n 117 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTLTN--FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELEN 117 (260)
T ss_pred ccccchhhhhhhccceeeccc--CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcc
Confidence 344556666666665544433 556777777777777 322 3444445557777777777765541 113455666
Q ss_pred CcEEecCCCccccccC---hhhhccCccCcEEEecCC
Q 002538 611 LKCLNLDQTKFLVTIP---RHLISSFSMLHVLRMFGS 644 (911)
Q Consensus 611 L~~L~L~~~~~l~~lp---~~~i~~l~~L~~L~l~~~ 644 (911)
|..|++.+|.. ..+- ..++.-+++|.+|+-..+
T Consensus 118 L~~Ldl~n~~~-~~l~dyre~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 118 LKSLDLFNCSV-TNLDDYREKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred hhhhhcccCCc-cccccHHHHHHHHhhhhcccccccc
Confidence 66777766652 2222 223445566666654443
No 205
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=96.67 E-value=0.05 Score=58.05 Aligned_cols=176 Identities=9% Similarity=0.037 Sum_probs=93.1
Q ss_pred HHHHHHHHHhccCCce-EEEEEcCCCChHHHHHHHHHhhhccCCCCCce------EEEEEeCCccChHHHHHHHHHHcCC
Q 002538 163 STLEDVWRCLVEESAG-IIGLYGMGGVGKTTLLTRINNKFLESPSDFDC------VIWVVVSKDLQIEKNQEIIGKKIGL 235 (911)
Q Consensus 163 ~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~------~~wv~~s~~~~~~~~~~~i~~~l~~ 235 (911)
...+++.+.+..++++ .+-+.|+.|+||+++|+.+++...-....... +-++..+..+|...+ .
T Consensus 10 ~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i--------~- 80 (319)
T PRK06090 10 PVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVI--------K- 80 (319)
T ss_pred HHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEE--------e-
Confidence 4456666666666544 78899999999999999988765211100000 000000000000000 0
Q ss_pred CCCccCCCCHHHHHHHHHHHh-----hcceEEEEEccccccc--ccccccCCCCCCCCCCCcEEEEEcCch-hhhh-ccC
Q 002538 236 FDDSWKNKNLDERALEIFKIL-----REKKFVLLLDDIWERV--NLNKVGVPLPSPQSTTASKVVFTTRFI-NVCG-SME 306 (911)
Q Consensus 236 ~~~~~~~~~~~~~~~~l~~~L-----~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~gs~IivTtR~~-~v~~-~~~ 306 (911)
+.........+++. .+.+.+ .+++=++|+|+++... ....+...+. ....++.+|++|.+. .+.. ..+
T Consensus 81 p~~~~~~I~vdqiR-~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLE--EPp~~t~fiL~t~~~~~lLpTI~S 157 (319)
T PRK06090 81 PEKEGKSITVEQIR-QCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLE--EPAPNCLFLLVTHNQKRLLPTIVS 157 (319)
T ss_pred cCcCCCcCCHHHHH-HHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhc--CCCCCeEEEEEECChhhChHHHHh
Confidence 00000111223332 233333 2445588999997642 2333333333 223456566555544 4433 334
Q ss_pred CcceEEccCCCHHHHHHHHHHHhCCcccCCCccHHHHHHHHHHHhCCcchHHHHH
Q 002538 307 AHRNFKVECLTEKHAWELFQMKVGEETLKSHPHVFELAQVVAKECGGLPLALITI 361 (911)
Q Consensus 307 ~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 361 (911)
-...+.+.+++.+++.+.+.... . . ....+++.++|.|+.+..+
T Consensus 158 RCq~~~~~~~~~~~~~~~L~~~~------~-~----~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 158 RCQQWVVTPPSTAQAMQWLKGQG------I-T----VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred cceeEeCCCCCHHHHHHHHHHcC------C-c----hHHHHHHHcCCCHHHHHHH
Confidence 45688999999999988886531 0 1 1356788999999976554
No 206
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.67 E-value=0.0057 Score=60.61 Aligned_cols=89 Identities=20% Similarity=0.245 Sum_probs=53.9
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCC-ccChHHHHHHHHHHcCCCCCcc-CCCCHHHHHHHHHH
Q 002538 177 AGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSK-DLQIEKNQEIIGKKIGLFDDSW-KNKNLDERALEIFK 254 (911)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~l~~ 254 (911)
.+||.++|+.|+||||.+.+++... ..+ -..+..++... .....+-++..++.++.+.... ...+..+......+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~-~~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~ 77 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARL-KLK--GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALE 77 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHH-HHT--T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHH-hhc--cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHH
Confidence 3689999999999999998888887 222 44566666542 2345566788888887653211 22344444444334
Q ss_pred Hhhcce-EEEEEccc
Q 002538 255 ILREKK-FVLLLDDI 268 (911)
Q Consensus 255 ~L~~k~-~LlVlDdv 268 (911)
..+.++ =+|++|=.
T Consensus 78 ~~~~~~~D~vlIDT~ 92 (196)
T PF00448_consen 78 KFRKKGYDLVLIDTA 92 (196)
T ss_dssp HHHHTTSSEEEEEE-
T ss_pred HHhhcCCCEEEEecC
Confidence 444443 47777765
No 207
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.66 E-value=0.0011 Score=66.12 Aligned_cols=112 Identities=27% Similarity=0.297 Sum_probs=81.9
Q ss_pred CCcccceEEEeecCCcccCCCCCCCCCccEEEcccC--cccccChhhhccCCCCcEEEccCCCCccc--CccccCcCCCC
Q 002538 514 EGWEKVKRLLLMKNHIKHLPDIPTCPHLLTLFLSHN--QLRWISEDFFQFMPSLKVLNLSFTKRHKF--PSGISKLASLQ 589 (911)
Q Consensus 514 ~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~--~l~~~~~~~~~~l~~L~~L~L~~~~~~~l--p~~i~~l~~L~ 589 (911)
..+..+..+++.+..+..+..+..+++|+.|.++.| +...-..-....+++|++|++++|++..+ -..+..+.+|.
T Consensus 40 d~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~ 119 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLK 119 (260)
T ss_pred ccccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchh
Confidence 345577888888888888888899999999999999 44332222345579999999999987643 22456778899
Q ss_pred EEeccCCCcCCcc----hhhhccCcCcEEecCCCccccccC
Q 002538 590 LIDLSYTSIRGLP----EELKALINLKCLNLDQTKFLVTIP 626 (911)
Q Consensus 590 ~L~L~~~~i~~lp----~~l~~L~~L~~L~L~~~~~l~~lp 626 (911)
.|++..|..+.+- ..+.-+++|.+||-..... ...|
T Consensus 120 ~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~~-~Ea~ 159 (260)
T KOG2739|consen 120 SLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVDG-EEAP 159 (260)
T ss_pred hhhcccCCccccccHHHHHHHHhhhhccccccccCC-cccc
Confidence 9999999776642 2466778999998776652 3444
No 208
>PRK08181 transposase; Validated
Probab=96.62 E-value=0.0026 Score=66.18 Aligned_cols=78 Identities=21% Similarity=0.207 Sum_probs=46.3
Q ss_pred HHhccCCceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCccChHHHHHHHHHHcCCCCCccCCCCHHHHH
Q 002538 170 RCLVEESAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDLQIEKNQEIIGKKIGLFDDSWKNKNLDERA 249 (911)
Q Consensus 170 ~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 249 (911)
+|+. +...+.++|.+|+|||.||.++.+... .....++|++ ..++...+..... ..+....
T Consensus 101 ~~~~--~~~nlll~Gp~GtGKTHLa~Aia~~a~---~~g~~v~f~~------~~~L~~~l~~a~~-------~~~~~~~- 161 (269)
T PRK08181 101 SWLA--KGANLLLFGPPGGGKSHLAAAIGLALI---ENGWRVLFTR------TTDLVQKLQVARR-------ELQLESA- 161 (269)
T ss_pred HHHh--cCceEEEEecCCCcHHHHHHHHHHHHH---HcCCceeeee------HHHHHHHHHHHHh-------CCcHHHH-
Confidence 4543 345688999999999999999998862 2233456664 3445555543321 1122222
Q ss_pred HHHHHHhhcceEEEEEccccc
Q 002538 250 LEIFKILREKKFVLLLDDIWE 270 (911)
Q Consensus 250 ~~l~~~L~~k~~LlVlDdv~~ 270 (911)
.+.+ .+--||||||+..
T Consensus 162 ---l~~l-~~~dLLIIDDlg~ 178 (269)
T PRK08181 162 ---IAKL-DKFDLLILDDLAY 178 (269)
T ss_pred ---HHHH-hcCCEEEEecccc
Confidence 2222 2344999999954
No 209
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.62 E-value=0.011 Score=71.62 Aligned_cols=101 Identities=19% Similarity=0.221 Sum_probs=59.2
Q ss_pred cccchHHHHHHHHHHhcc-------C--CceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCccChHHHHH
Q 002538 157 IVKGLESTLEDVWRCLVE-------E--SAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDLQIEKNQE 227 (911)
Q Consensus 157 ~~~Gr~~~~~~l~~~L~~-------~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 227 (911)
.|+|.+..++.+.+.+.. . ...++.++|+.|+|||+||+.++... +...+.++.+.-.+...+
T Consensus 455 ~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l------~~~~~~~d~se~~~~~~~-- 526 (731)
T TIGR02639 455 KIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEAL------GVHLERFDMSEYMEKHTV-- 526 (731)
T ss_pred ceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHh------cCCeEEEeCchhhhcccH--
Confidence 467999999988887753 1 23468899999999999999998876 223455555442221111
Q ss_pred HHHHHcCCCCCccCCCCHHHHHHHHHHHhhcce-EEEEEcccccc
Q 002538 228 IIGKKIGLFDDSWKNKNLDERALEIFKILREKK-FVLLLDDIWER 271 (911)
Q Consensus 228 ~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~k~-~LlVlDdv~~~ 271 (911)
...++.+.. ....+. ...+.+.++.++ -+|+||+++..
T Consensus 527 --~~lig~~~g-yvg~~~---~~~l~~~~~~~p~~VvllDEieka 565 (731)
T TIGR02639 527 --SRLIGAPPG-YVGFEQ---GGLLTEAVRKHPHCVLLLDEIEKA 565 (731)
T ss_pred --HHHhcCCCC-Ccccch---hhHHHHHHHhCCCeEEEEechhhc
Confidence 111222111 111111 223344444444 49999999754
No 210
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.61 E-value=0.057 Score=58.39 Aligned_cols=177 Identities=11% Similarity=0.054 Sum_probs=93.5
Q ss_pred HHHHHHHHHhccCCce-EEEEEcCCCChHHHHHHHHHhhhccCC-CCCc------eEEEEEeCCccChHHHHHHHHHHcC
Q 002538 163 STLEDVWRCLVEESAG-IIGLYGMGGVGKTTLLTRINNKFLESP-SDFD------CVIWVVVSKDLQIEKNQEIIGKKIG 234 (911)
Q Consensus 163 ~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~-~~f~------~~~wv~~s~~~~~~~~~~~i~~~l~ 234 (911)
..-+++.+.+..++++ -+-+.|+.|+||+|+|..++....-.. ..-. .+-++..+..+|+..+.
T Consensus 9 ~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~-------- 80 (334)
T PRK07993 9 PDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLT-------- 80 (334)
T ss_pred HHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEe--------
Confidence 3456677777766544 677999999999999999877652100 0000 00000001111110000
Q ss_pred CCCCccCCCCHHHHHHHHHHHh-----hcceEEEEEccccccc--ccccccCCCCCCCCCCCcEEEEEcCc-hhhhhc-c
Q 002538 235 LFDDSWKNKNLDERALEIFKIL-----REKKFVLLLDDIWERV--NLNKVGVPLPSPQSTTASKVVFTTRF-INVCGS-M 305 (911)
Q Consensus 235 ~~~~~~~~~~~~~~~~~l~~~L-----~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~gs~IivTtR~-~~v~~~-~ 305 (911)
+......-..+++. .+.+.+ .+++=++|+|+++... .-..+...+. ....++.+|++|.+ ..+... .
T Consensus 81 -p~~~~~~I~idqiR-~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLE--EPp~~t~fiL~t~~~~~lLpTIr 156 (334)
T PRK07993 81 -PEKGKSSLGVDAVR-EVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLE--EPPENTWFFLACREPARLLATLR 156 (334)
T ss_pred -cccccccCCHHHHH-HHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhc--CCCCCeEEEEEECChhhChHHHH
Confidence 00000011222222 233333 3566689999997642 2223333333 22335556655554 444432 3
Q ss_pred CCcceEEccCCCHHHHHHHHHHHhCCcccCCCccHHHHHHHHHHHhCCcchHHH
Q 002538 306 EAHRNFKVECLTEKHAWELFQMKVGEETLKSHPHVFELAQVVAKECGGLPLALI 359 (911)
Q Consensus 306 ~~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~GlPLai~ 359 (911)
+-...+.+.+++.+++.+.+....+.+ .+.+..++..++|.|..+.
T Consensus 157 SRCq~~~~~~~~~~~~~~~L~~~~~~~--------~~~a~~~~~la~G~~~~Al 202 (334)
T PRK07993 157 SRCRLHYLAPPPEQYALTWLSREVTMS--------QDALLAALRLSAGAPGAAL 202 (334)
T ss_pred hccccccCCCCCHHHHHHHHHHccCCC--------HHHHHHHHHHcCCCHHHHH
Confidence 345678999999999988776542211 2346788999999997443
No 211
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=96.58 E-value=0.079 Score=57.64 Aligned_cols=202 Identities=14% Similarity=0.192 Sum_probs=122.9
Q ss_pred hHHHHHHHHHHhccCCceEEEEEcCCCChHHHHH-HHHHhhhccCCCCCceEEEEEeCCcc---ChHHHHHHHHHHcCCC
Q 002538 161 LESTLEDVWRCLVEESAGIIGLYGMGGVGKTTLL-TRINNKFLESPSDFDCVIWVVVSKDL---QIEKNQEIIGKKIGLF 236 (911)
Q Consensus 161 r~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~~f~~~~wv~~s~~~---~~~~~~~~i~~~l~~~ 236 (911)
|.+.+++|..||.+..-..|.|.|+-|.||+.|+ .++.++. + .++.+.+.+-. +-......++.++|.-
T Consensus 1 R~e~~~~L~~wL~e~~~TFIvV~GPrGSGK~elV~d~~L~~r-~------~vL~IDC~~i~~ar~D~~~I~~lA~qvGY~ 73 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENPNTFIVVQGPRGSGKRELVMDHVLKDR-K------NVLVIDCDQIVKARGDAAFIKNLASQVGYF 73 (431)
T ss_pred CchHHHHHHHHHhcCCCeEEEEECCCCCCccHHHHHHHHhCC-C------CEEEEEChHhhhccChHHHHHHHHHhcCCC
Confidence 5677899999999987889999999999999999 7776664 1 16666654422 3445566666666532
Q ss_pred C-----------------------CccCCCCHHHHHHHHH---HHhhc--------------------------ceEEEE
Q 002538 237 D-----------------------DSWKNKNLDERALEIF---KILRE--------------------------KKFVLL 264 (911)
Q Consensus 237 ~-----------------------~~~~~~~~~~~~~~l~---~~L~~--------------------------k~~LlV 264 (911)
. ..+......++...+. ..|++ ++=+||
T Consensus 74 PvFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~~PVVV 153 (431)
T PF10443_consen 74 PVFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPERRPVVV 153 (431)
T ss_pred cchHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCccCCEEE
Confidence 1 1112222222222111 11111 245899
Q ss_pred Ecccccccc--------cccccCCCCCCCCCCCcEEEEEcCchhhhhc----cC--CcceEEccCCCHHHHHHHHHHHhC
Q 002538 265 LDDIWERVN--------LNKVGVPLPSPQSTTASKVVFTTRFINVCGS----ME--AHRNFKVECLTEKHAWELFQMKVG 330 (911)
Q Consensus 265 lDdv~~~~~--------~~~~~~~l~~~~~~~gs~IivTtR~~~v~~~----~~--~~~~~~l~~L~~~es~~Lf~~~a~ 330 (911)
+|+.-...+ +.++...+- ..+--.||++|-+...... +. ..+.+.|.-.+++.|.++...+..
T Consensus 154 IdnF~~k~~~~~~iy~~laeWAa~Lv---~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~L~ 230 (431)
T PF10443_consen 154 IDNFLHKAEENDFIYDKLAEWAASLV---QNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQLD 230 (431)
T ss_pred EcchhccCcccchHHHHHHHHHHHHH---hcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHHhc
Confidence 999854311 111222222 3445679998887666443 32 346778999999999999988875
Q ss_pred CcccC------------CC-----ccHHHHHHHHHHHhCCcchHHHHHHhhhccCCCHH
Q 002538 331 EETLK------------SH-----PHVFELAQVVAKECGGLPLALITIGRAMAYKKTRE 372 (911)
Q Consensus 331 ~~~~~------------~~-----~~~~~~~~~i~~~c~GlPLai~~~g~~l~~~~~~~ 372 (911)
..... .. ....+-....++..||==.=+..+++.++...++.
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p~ 289 (431)
T PF10443_consen 231 EDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESPE 289 (431)
T ss_pred ccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCHH
Confidence 43100 00 12334446677788887778888888887765543
No 212
>PRK06921 hypothetical protein; Provisional
Probab=96.56 E-value=0.0021 Score=67.08 Aligned_cols=39 Identities=31% Similarity=0.376 Sum_probs=29.7
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEe
Q 002538 176 SAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVV 216 (911)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~ 216 (911)
....+.++|..|+|||+||.++++... ......+++++.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~--~~~g~~v~y~~~ 154 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELM--RKKGVPVLYFPF 154 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHh--hhcCceEEEEEH
Confidence 456789999999999999999999872 221345667754
No 213
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.55 E-value=0.027 Score=61.57 Aligned_cols=146 Identities=23% Similarity=0.206 Sum_probs=89.7
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCccChHHHHHHHHHHcCCCCCccCCCCHHHHHHHHHHH
Q 002538 176 SAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDLQIEKNQEIIGKKIGLFDDSWKNKNLDERALEIFKI 255 (911)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 255 (911)
....+.+.|++|+|||+||..++.. ..|..+--++ +++ ....+.......+.+.
T Consensus 537 ~lvSvLl~Gp~~sGKTaLAA~iA~~-----S~FPFvKiiS------pe~---------------miG~sEsaKc~~i~k~ 590 (744)
T KOG0741|consen 537 PLVSVLLEGPPGSGKTALAAKIALS-----SDFPFVKIIS------PED---------------MIGLSESAKCAHIKKI 590 (744)
T ss_pred cceEEEEecCCCCChHHHHHHHHhh-----cCCCeEEEeC------hHH---------------ccCccHHHHHHHHHHH
Confidence 4556778999999999999999775 3455433221 111 1122333344444443
Q ss_pred h----hcceEEEEEcccccccccccccCCCCC-----------CCCCCCcE--EEEEcCchhhhhccCC----cceEEcc
Q 002538 256 L----REKKFVLLLDDIWERVNLNKVGVPLPS-----------PQSTTASK--VVFTTRFINVCGSMEA----HRNFKVE 314 (911)
Q Consensus 256 L----~~k~~LlVlDdv~~~~~~~~~~~~l~~-----------~~~~~gs~--IivTtR~~~v~~~~~~----~~~~~l~ 314 (911)
+ +..=..||+||+....+|-.++-.|.. -...+|-| |+-||....|...|+- ...|.+.
T Consensus 591 F~DAYkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vp 670 (744)
T KOG0741|consen 591 FEDAYKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVP 670 (744)
T ss_pred HHHhhcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecC
Confidence 3 445579999999888777766544321 01123444 4558888888888764 3578888
Q ss_pred CCCH-HHHHHHHHHHhCCcccCCCccHHHHHHHHHHHh
Q 002538 315 CLTE-KHAWELFQMKVGEETLKSHPHVFELAQVVAKEC 351 (911)
Q Consensus 315 ~L~~-~es~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c 351 (911)
.++. ++..+.++..-. -.+.+.+.++.+...+|
T Consensus 671 nl~~~~~~~~vl~~~n~----fsd~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 671 NLTTGEQLLEVLEELNI----FSDDEVRAIAEQLLSKK 704 (744)
T ss_pred ccCchHHHHHHHHHccC----CCcchhHHHHHHHhccc
Confidence 8887 777777766431 12334556666666666
No 214
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.52 E-value=0.029 Score=68.09 Aligned_cols=170 Identities=19% Similarity=0.249 Sum_probs=92.3
Q ss_pred ccchHHHHHHHHHHhcc-------------CCceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCccChHH
Q 002538 158 VKGLESTLEDVWRCLVE-------------ESAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDLQIEK 224 (911)
Q Consensus 158 ~~Gr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~ 224 (911)
+.|.+..++.+.+.+.- ...+-|.++|++|+|||++|+++++.. ...| +.+..+ +
T Consensus 455 i~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~---~~~f---i~v~~~------~ 522 (733)
T TIGR01243 455 IGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATES---GANF---IAVRGP------E 522 (733)
T ss_pred cccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc---CCCE---EEEehH------H
Confidence 56888877777665531 134468899999999999999999986 2333 222111 1
Q ss_pred HHHHHHHHcCCCCCccCCCCHHHHHHHHHHHh-hcceEEEEEcccccccc--------------cccccCCCCCCCCCCC
Q 002538 225 NQEIIGKKIGLFDDSWKNKNLDERALEIFKIL-REKKFVLLLDDIWERVN--------------LNKVGVPLPSPQSTTA 289 (911)
Q Consensus 225 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L-~~k~~LlVlDdv~~~~~--------------~~~~~~~l~~~~~~~g 289 (911)
+ ... +...+ +.....+.... +..+.+|++|+++.... ...+...+.......+
T Consensus 523 l----~~~-------~vGes-e~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~ 590 (733)
T TIGR01243 523 I----LSK-------WVGES-EKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSN 590 (733)
T ss_pred H----hhc-------ccCcH-HHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCC
Confidence 1 111 01112 22233333333 45678999999964310 0111111110012234
Q ss_pred cEEEEEcCchhhhhc-c----CCcceEEccCCCHHHHHHHHHHHhCCcccCCCccHHHHHHHHHHHhCCcc
Q 002538 290 SKVVFTTRFINVCGS-M----EAHRNFKVECLTEKHAWELFQMKVGEETLKSHPHVFELAQVVAKECGGLP 355 (911)
Q Consensus 290 s~IivTtR~~~v~~~-~----~~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~GlP 355 (911)
--||.||...+.... + .-+..+.+...+.++-.++|+.+..........++ ..+++.+.|.-
T Consensus 591 v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~l----~~la~~t~g~s 657 (733)
T TIGR01243 591 VVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVDL----EELAEMTEGYT 657 (733)
T ss_pred EEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCCH----HHHHHHcCCCC
Confidence 456667766554321 1 23467888888988888898776543332222233 45666677643
No 215
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.51 E-value=0.044 Score=57.35 Aligned_cols=57 Identities=23% Similarity=0.209 Sum_probs=36.8
Q ss_pred HHHHHHHHHHhccCCceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCccChHHHH
Q 002538 162 ESTLEDVWRCLVEESAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDLQIEKNQ 226 (911)
Q Consensus 162 ~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~ 226 (911)
.+.++++..++..+ ..|.+.|.+|+|||++|+.+++.. .. ..+.++++...+..+++
T Consensus 8 ~~l~~~~l~~l~~g--~~vLL~G~~GtGKT~lA~~la~~l---g~---~~~~i~~~~~~~~~dll 64 (262)
T TIGR02640 8 KRVTSRALRYLKSG--YPVHLRGPAGTGKTTLAMHVARKR---DR---PVMLINGDAELTTSDLV 64 (262)
T ss_pred HHHHHHHHHHHhcC--CeEEEEcCCCCCHHHHHHHHHHHh---CC---CEEEEeCCccCCHHHHh
Confidence 34455555555432 355689999999999999998754 22 24556666555555443
No 216
>PRK09183 transposase/IS protein; Provisional
Probab=96.50 E-value=0.0034 Score=65.31 Aligned_cols=26 Identities=35% Similarity=0.379 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhh
Q 002538 176 SAGIIGLYGMGGVGKTTLLTRINNKF 201 (911)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 201 (911)
....+.|+|.+|+|||+||..+++..
T Consensus 101 ~~~~v~l~Gp~GtGKThLa~al~~~a 126 (259)
T PRK09183 101 RNENIVLLGPSGVGKTHLAIALGYEA 126 (259)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHH
Confidence 34578899999999999999998875
No 217
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.50 E-value=0.0021 Score=58.54 Aligned_cols=23 Identities=30% Similarity=0.535 Sum_probs=21.6
Q ss_pred EEEEEcCCCChHHHHHHHHHhhh
Q 002538 179 IIGLYGMGGVGKTTLLTRINNKF 201 (911)
Q Consensus 179 vi~I~G~gGiGKTtLa~~v~~~~ 201 (911)
||+|.|++|+||||+|+.+.+..
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999986
No 218
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.47 E-value=0.0044 Score=64.66 Aligned_cols=133 Identities=18% Similarity=0.262 Sum_probs=75.0
Q ss_pred cchHHHHHHHHHHhccCCceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEE----EEeCCccC---------hHHH
Q 002538 159 KGLESTLEDVWRCLVEESAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIW----VVVSKDLQ---------IEKN 225 (911)
Q Consensus 159 ~Gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~w----v~~s~~~~---------~~~~ 225 (911)
-+|..+..--+++|.++.++.|.+.|.+|.|||-||-+..=...-.++.|..++- +.++++.. ..-.
T Consensus 227 ~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~eEeKm~PW 306 (436)
T COG1875 227 RPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTEEEKMGPW 306 (436)
T ss_pred CcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCchhhhccch
Confidence 3567777778899999999999999999999999887654332123445554332 22333221 1112
Q ss_pred HHHHHHHcCCCCCccCCCCHHHHHHHH----------HHHhhcc---eEEEEEccccccc--ccccccCCCCCCCCCCCc
Q 002538 226 QEIIGKKIGLFDDSWKNKNLDERALEI----------FKILREK---KFVLLLDDIWERV--NLNKVGVPLPSPQSTTAS 290 (911)
Q Consensus 226 ~~~i~~~l~~~~~~~~~~~~~~~~~~l----------~~~L~~k---~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~gs 290 (911)
.+.|..-+..-... .... ....+.+ ..+++|+ +.+||+|...+.. +...+ +. ..+.||
T Consensus 307 mq~i~DnLE~L~~~-~~~~-~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLTpheikTi---lt--R~G~Gs 379 (436)
T COG1875 307 MQAIFDNLEVLFSP-NEPG-DRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLTPHELKTI---LT--RAGEGS 379 (436)
T ss_pred HHHHHhHHHHHhcc-cccc-hHHHHHHHhccceeeeeeeeecccccccceEEEehhhccCHHHHHHH---HH--hccCCC
Confidence 33333322111000 1111 2222222 1233454 3599999998753 33333 33 568899
Q ss_pred EEEEEcCc
Q 002538 291 KVVFTTRF 298 (911)
Q Consensus 291 ~IivTtR~ 298 (911)
||+.|---
T Consensus 380 KIVl~gd~ 387 (436)
T COG1875 380 KIVLTGDP 387 (436)
T ss_pred EEEEcCCH
Confidence 99998753
No 219
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.46 E-value=0.084 Score=59.39 Aligned_cols=89 Identities=20% Similarity=0.286 Sum_probs=46.9
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCC-ccChHHHHHHHHHHcCCCCCccCCCCHHHHHHHHHH
Q 002538 176 SAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSK-DLQIEKNQEIIGKKIGLFDDSWKNKNLDERALEIFK 254 (911)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 254 (911)
...+|+|+|.+|+||||++.++.... ........+..++... .......+....+.++.... ...+...+...+.
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~l-a~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~--~a~d~~~L~~aL~- 424 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRF-AAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVH--EADSAESLLDLLE- 424 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH-HHhcCCCceEEEecccccccHHHHHHHhhcccCceeE--ecCcHHHHHHHHH-
Confidence 45799999999999999999988765 2222233455554321 11122223333333433221 1122333333333
Q ss_pred HhhcceEEEEEcccc
Q 002538 255 ILREKKFVLLLDDIW 269 (911)
Q Consensus 255 ~L~~k~~LlVlDdv~ 269 (911)
.+. +.-+|++|..-
T Consensus 425 ~l~-~~DLVLIDTaG 438 (559)
T PRK12727 425 RLR-DYKLVLIDTAG 438 (559)
T ss_pred Hhc-cCCEEEecCCC
Confidence 233 34588888774
No 220
>PRK06526 transposase; Provisional
Probab=96.46 E-value=0.0023 Score=66.10 Aligned_cols=26 Identities=23% Similarity=0.276 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhh
Q 002538 176 SAGIIGLYGMGGVGKTTLLTRINNKF 201 (911)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 201 (911)
+...+.++|.+|+|||+||..+.+..
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a 122 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRA 122 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHH
Confidence 44568899999999999999998876
No 221
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.42 E-value=0.031 Score=62.23 Aligned_cols=90 Identities=19% Similarity=0.266 Sum_probs=56.2
Q ss_pred ccchHHHHHHHHHHhcc------------CCceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCccChHHH
Q 002538 158 VKGLESTLEDVWRCLVE------------ESAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDLQIEKN 225 (911)
Q Consensus 158 ~~Gr~~~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~ 225 (911)
+=|.++.+.++.+.+.. ...+-|.++|++|.|||.||++++++. .-.| +.++..
T Consensus 192 iGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel---~vPf-----~~isAp------ 257 (802)
T KOG0733|consen 192 IGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGEL---GVPF-----LSISAP------ 257 (802)
T ss_pred ccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhc---CCce-----Eeecch------
Confidence 55888888877766642 134568899999999999999999987 2222 222221
Q ss_pred HHHHHHHcCCCCCccCCCCHHHHHHHHHHHhhcceEEEEEccccc
Q 002538 226 QEIIGKKIGLFDDSWKNKNLDERALEIFKILREKKFVLLLDDIWE 270 (911)
Q Consensus 226 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~ 270 (911)
.|..+. ...+.+.+.+...+.-..-++++.+|+++.
T Consensus 258 --eivSGv-------SGESEkkiRelF~~A~~~aPcivFiDeIDA 293 (802)
T KOG0733|consen 258 --EIVSGV-------SGESEKKIRELFDQAKSNAPCIVFIDEIDA 293 (802)
T ss_pred --hhhccc-------CcccHHHHHHHHHHHhccCCeEEEeecccc
Confidence 111111 223333333333344456789999999975
No 222
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=96.41 E-value=0.1 Score=59.52 Aligned_cols=196 Identities=15% Similarity=0.111 Sum_probs=116.9
Q ss_pred ccchHHHHHHHHHHhcc-----CCceEEEEEcCCCChHHHHHHHHHhhhc-----cCCCCCceEEEEEeCCccChHHHHH
Q 002538 158 VKGLESTLEDVWRCLVE-----ESAGIIGLYGMGGVGKTTLLTRINNKFL-----ESPSDFDCVIWVVVSKDLQIEKNQE 227 (911)
Q Consensus 158 ~~Gr~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~~-----~~~~~f~~~~wv~~s~~~~~~~~~~ 227 (911)
+-+|+.+..+|.+.+.. +..+.+.|.|-+|.|||..+..|.+... ..-..|+ .+.|..-.-....+++.
T Consensus 398 LpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveINgm~l~~~~~~Y~ 476 (767)
T KOG1514|consen 398 LPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD-YVEINGLRLASPREIYE 476 (767)
T ss_pred ccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEcceeecCHHHHHH
Confidence 44899999998887753 3445999999999999999999988541 1122344 33455555567899999
Q ss_pred HHHHHcCCCCCccCCCCHHHHHHHHHHHhh-----cceEEEEEccccccc-----ccccccCCCCCCCCCCCcEEEEEcC
Q 002538 228 IIGKKIGLFDDSWKNKNLDERALEIFKILR-----EKKFVLLLDDIWERV-----NLNKVGVPLPSPQSTTASKVVFTTR 297 (911)
Q Consensus 228 ~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~-----~k~~LlVlDdv~~~~-----~~~~~~~~l~~~~~~~gs~IivTtR 297 (911)
.|..++.... ..-....+.|..+.. .+..+|++|+++..- .+..+ |.+ ....+||++|-+=
T Consensus 477 ~I~~~lsg~~-----~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~---fdW-pt~~~sKLvvi~I 547 (767)
T KOG1514|consen 477 KIWEALSGER-----VTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNI---FDW-PTLKNSKLVVIAI 547 (767)
T ss_pred HHHHhcccCc-----ccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHH---hcC-CcCCCCceEEEEe
Confidence 9999987643 233444555655554 356899999986431 12222 221 3456777766431
Q ss_pred --chhh---------hhccCCcceEEccCCCHHHHHHHHHHHhCCcccCCCccHHHHHHHHHHHhCCcchHHHHHHhh
Q 002538 298 --FINV---------CGSMEAHRNFKVECLTEKHAWELFQMKVGEETLKSHPHVFELAQVVAKECGGLPLALITIGRA 364 (911)
Q Consensus 298 --~~~v---------~~~~~~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~g~~ 364 (911)
..+. +..+ ....+...|.+.++-.++...+..+...-.....+=++++|+...|-.-.|+.+.-++
T Consensus 548 aNTmdlPEr~l~nrvsSRl-g~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic~RA 624 (767)
T KOG1514|consen 548 ANTMDLPERLLMNRVSSRL-GLTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDICRRA 624 (767)
T ss_pred cccccCHHHHhccchhhhc-cceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 1111 1111 1245677788888877777666543321122333445556665555555555555443
No 223
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.39 E-value=0.0013 Score=65.42 Aligned_cols=37 Identities=22% Similarity=0.201 Sum_probs=18.1
Q ss_pred CCCCccEEEcccCcccccCh----hhhccCCCCcEEEccCC
Q 002538 537 TCPHLLTLFLSHNQLRWISE----DFFQFMPSLKVLNLSFT 573 (911)
Q Consensus 537 ~~~~L~~L~l~~~~l~~~~~----~~~~~l~~L~~L~L~~~ 573 (911)
.+..+..+++++|.+..-.. ..+.+-.+|++.++++-
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ 68 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA 68 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh
Confidence 34556666666664432111 12333455666665554
No 224
>PRK04296 thymidine kinase; Provisional
Probab=96.39 E-value=0.0031 Score=62.41 Aligned_cols=113 Identities=15% Similarity=0.045 Sum_probs=62.4
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCccChHHHHHHHHHHcCCCCCccCCCCHHHHHHHHHHHhh
Q 002538 178 GIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDLQIEKNQEIIGKKIGLFDDSWKNKNLDERALEIFKILR 257 (911)
Q Consensus 178 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~ 257 (911)
.++.|+|..|.||||+|..++.+. ..+...++.+. ..++.......+++.++...........++....+.+ ..
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~---~~~g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~ 76 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNY---EERGMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EG 76 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHH---HHcCCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hC
Confidence 477899999999999999998887 22233344442 1112222233455555543221112233444444444 23
Q ss_pred cceEEEEEcccccc--cccccccCCCCCCCCCCCcEEEEEcCchh
Q 002538 258 EKKFVLLLDDIWER--VNLNKVGVPLPSPQSTTASKVVFTTRFIN 300 (911)
Q Consensus 258 ~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~gs~IivTtR~~~ 300 (911)
++.-+||+|.+.-. ++..++...+ ...|..||+|.++.+
T Consensus 77 ~~~dvviIDEaq~l~~~~v~~l~~~l----~~~g~~vi~tgl~~~ 117 (190)
T PRK04296 77 EKIDCVLIDEAQFLDKEQVVQLAEVL----DDLGIPVICYGLDTD 117 (190)
T ss_pred CCCCEEEEEccccCCHHHHHHHHHHH----HHcCCeEEEEecCcc
Confidence 34459999999542 2122222221 245788999998644
No 225
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.37 E-value=0.0096 Score=61.46 Aligned_cols=93 Identities=19% Similarity=0.298 Sum_probs=57.7
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHhhhccCCCCC-ceEEEEEeCCcc-ChHHHHHHHHHHcCCCC-----CccCCCCHH-
Q 002538 175 ESAGIIGLYGMGGVGKTTLLTRINNKFLESPSDF-DCVIWVVVSKDL-QIEKNQEIIGKKIGLFD-----DSWKNKNLD- 246 (911)
Q Consensus 175 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f-~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~-----~~~~~~~~~- 246 (911)
.+-..++|+|..|+||||||+++++.. +.+| +.++++-+++.. ...++.+.+.+.-.+.. ...+.....
T Consensus 67 g~GQr~~If~~~G~GKTtLa~~i~~~i---~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r 143 (274)
T cd01133 67 AKGGKIGLFGGAGVGKTVLIMELINNI---AKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGAR 143 (274)
T ss_pred ccCCEEEEecCCCCChhHHHHHHHHHH---HhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHH
Confidence 355789999999999999999999987 3334 456667676654 34555555554221110 011111111
Q ss_pred ----HHHHHHHHHh--h-cceEEEEEccccc
Q 002538 247 ----ERALEIFKIL--R-EKKFVLLLDDIWE 270 (911)
Q Consensus 247 ----~~~~~l~~~L--~-~k~~LlVlDdv~~ 270 (911)
...-.+.+++ + ++.+|+|+||+-.
T Consensus 144 ~~~~~~a~~~AEyfr~~~g~~Vl~~~Dsltr 174 (274)
T cd01133 144 ARVALTGLTMAEYFRDEEGQDVLLFIDNIFR 174 (274)
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEEeChhH
Confidence 2223455666 3 8999999999854
No 226
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.32 E-value=0.03 Score=67.99 Aligned_cols=171 Identities=15% Similarity=0.137 Sum_probs=89.4
Q ss_pred ccchHHHHHHHHHHhcc-------------CCceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCccChHH
Q 002538 158 VKGLESTLEDVWRCLVE-------------ESAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDLQIEK 224 (911)
Q Consensus 158 ~~Gr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~ 224 (911)
+.|.+..++++.+.+.- ...+.|.++|.+|+||||||+.+++.. ...| +.+..+ .
T Consensus 180 i~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~---~~~~---i~i~~~------~ 247 (733)
T TIGR01243 180 IGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEA---GAYF---ISINGP------E 247 (733)
T ss_pred hcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHh---CCeE---EEEecH------H
Confidence 66999998888776631 134578899999999999999999876 2222 222211 1
Q ss_pred HHHHHHHHcCCCCCccCCCCHHHHHHHHHHHhhcceEEEEEcccccccc-------------cccccCCCCCCCCCCCcE
Q 002538 225 NQEIIGKKIGLFDDSWKNKNLDERALEIFKILREKKFVLLLDDIWERVN-------------LNKVGVPLPSPQSTTASK 291 (911)
Q Consensus 225 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~~-------------~~~~~~~l~~~~~~~gs~ 291 (911)
+ .... .......+...+.........+|+|||++.... ...+...+.. ....+..
T Consensus 248 i----~~~~-------~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~-l~~~~~v 315 (733)
T TIGR01243 248 I----MSKY-------YGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDG-LKGRGRV 315 (733)
T ss_pred H----hccc-------ccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhc-cccCCCE
Confidence 1 0000 111111222222223345668999999864210 0111111110 0122333
Q ss_pred EEE-EcCchh-hhhcc----CCcceEEccCCCHHHHHHHHHHHhCCcccCCCccHHHHHHHHHHHhCCcch
Q 002538 292 VVF-TTRFIN-VCGSM----EAHRNFKVECLTEKHAWELFQMKVGEETLKSHPHVFELAQVVAKECGGLPL 356 (911)
Q Consensus 292 Iiv-TtR~~~-v~~~~----~~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~GlPL 356 (911)
++| ||.... +...+ .-...+.+...+.++-.++++........... .....+++.+.|.--
T Consensus 316 ivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d----~~l~~la~~t~G~~g 382 (733)
T TIGR01243 316 IVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAED----VDLDKLAEVTHGFVG 382 (733)
T ss_pred EEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccc----cCHHHHHHhCCCCCH
Confidence 444 554333 21111 12346778888888888888765433221111 224667777877643
No 227
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.31 E-value=0.0049 Score=65.89 Aligned_cols=45 Identities=24% Similarity=0.333 Sum_probs=39.8
Q ss_pred cccchHHHHHHHHHHhcc------CCceEEEEEcCCCChHHHHHHHHHhhh
Q 002538 157 IVKGLESTLEDVWRCLVE------ESAGIIGLYGMGGVGKTTLLTRINNKF 201 (911)
Q Consensus 157 ~~~Gr~~~~~~l~~~L~~------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 201 (911)
.++|.++.++++++++.. ...+++.++|++|+||||||+.+.+..
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l 102 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGL 102 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 567999999999999864 245799999999999999999999987
No 228
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.21 E-value=0.013 Score=59.20 Aligned_cols=48 Identities=21% Similarity=0.291 Sum_probs=37.5
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCccChHHHHH
Q 002538 176 SAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDLQIEKNQE 227 (911)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 227 (911)
.-.++.|+|.+|+|||++|.+++... ......++|++... ++...+.+
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~---~~~g~~v~yi~~e~-~~~~rl~~ 58 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNA---ARQGKKVVYIDTEG-LSPERFKQ 58 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HhCCCeEEEEECCC-CCHHHHHH
Confidence 45799999999999999999988776 23357899999875 66555544
No 229
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.20 E-value=0.022 Score=59.17 Aligned_cols=92 Identities=22% Similarity=0.278 Sum_probs=55.8
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhhccC----CCCCceEEEEEeCCccChHHHHHHHHHHcCCCCCc-------cCCCC
Q 002538 176 SAGIIGLYGMGGVGKTTLLTRINNKFLES----PSDFDCVIWVVVSKDLQIEKNQEIIGKKIGLFDDS-------WKNKN 244 (911)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-------~~~~~ 244 (911)
...+.=|+|.+|+|||.|+.+++-.. .. .+.-..++|++-...|....+. +|++..+...+. ....+
T Consensus 37 ~g~itEi~G~~gsGKTql~l~l~~~~-~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~~~~~~~l~~I~v~~~~~ 114 (256)
T PF08423_consen 37 TGSITEIVGESGSGKTQLCLQLAVNV-QLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFGLDPEEILDNIFVIRVFD 114 (256)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHT-TSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTTS-HHHHHHTEEEEE-SS
T ss_pred CCcEEEEEEecccccchHHHHHHHHh-hcccccccCCCceEEEeCCCCCCHHHHH-HHhhccccccchhhhceeeeecCC
Confidence 34689999999999999998876543 11 1223579999999999888775 456655432210 01223
Q ss_pred HHHHHH---HHHHHhh-cceEEEEEcccc
Q 002538 245 LDERAL---EIFKILR-EKKFVLLLDDIW 269 (911)
Q Consensus 245 ~~~~~~---~l~~~L~-~k~~LlVlDdv~ 269 (911)
.+++.. .+...+. .+--|||+|.+-
T Consensus 115 ~~~l~~~L~~l~~~l~~~~ikLIVIDSIa 143 (256)
T PF08423_consen 115 LEELLELLEQLPKLLSESKIKLIVIDSIA 143 (256)
T ss_dssp HHHHHHHHHHHHHHHHHSCEEEEEEETSS
T ss_pred HHHHHHHHHHHHhhccccceEEEEecchH
Confidence 333333 3333443 344599999874
No 230
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.18 E-value=0.021 Score=58.98 Aligned_cols=93 Identities=19% Similarity=0.252 Sum_probs=55.2
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhhccCCC----CCceEEEEEeCCccChHHHHHHHHHHcCCCCCc-------cCCCC
Q 002538 176 SAGIIGLYGMGGVGKTTLLTRINNKFLESPS----DFDCVIWVVVSKDLQIEKNQEIIGKKIGLFDDS-------WKNKN 244 (911)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-------~~~~~ 244 (911)
.-.++.|+|.+|+|||++|.+++... .... ....++|++....++...+. ++++..+...+. ....+
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~-~~~~~~~g~~~~viyi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~~~ 95 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTV-QLPIELGGLEGKAVYIDTEGTFRPERLV-QIAERFGLDPEEVLDNIYVARAYN 95 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHe-eCccccCCCCccEEEEeCCCCcCHHHHH-HHHHHhccChHhHhcCEEEEecCC
Confidence 45799999999999999999997553 1112 13689999988877655443 333333321110 01122
Q ss_pred HHH---HHHHHHHHhh-c-ceEEEEEccccc
Q 002538 245 LDE---RALEIFKILR-E-KKFVLLLDDIWE 270 (911)
Q Consensus 245 ~~~---~~~~l~~~L~-~-k~~LlVlDdv~~ 270 (911)
.++ ....+...+. . +--+||+|-+..
T Consensus 96 ~~~l~~~l~~l~~~l~~~~~~~liVIDSis~ 126 (235)
T cd01123 96 SDHQLQLLEELEAILIESSRIKLVIVDSVTA 126 (235)
T ss_pred HHHHHHHHHHHHHHHhhcCCeeEEEEeCcHH
Confidence 222 3344444443 3 556888888853
No 231
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.16 E-value=0.013 Score=62.27 Aligned_cols=87 Identities=17% Similarity=0.180 Sum_probs=57.4
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCccChHHHHHHHHHHcCCCCCc---cCCCCHHHHHHHH
Q 002538 176 SAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDLQIEKNQEIIGKKIGLFDDS---WKNKNLDERALEI 252 (911)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l 252 (911)
.-+++-|+|.+|+||||||.++.... ...-..++|+...+.++.. .+++++...+. ....+.++....+
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~---~~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~ 125 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEA---QKAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIA 125 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HHcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 45799999999999999999987776 2334667899776665543 34555543211 1223455555555
Q ss_pred HHHhh-cceEEEEEccccc
Q 002538 253 FKILR-EKKFVLLLDDIWE 270 (911)
Q Consensus 253 ~~~L~-~k~~LlVlDdv~~ 270 (911)
...++ +.--+||+|-|-.
T Consensus 126 ~~li~~~~~~lIVIDSv~a 144 (321)
T TIGR02012 126 ETLVRSGAVDIIVVDSVAA 144 (321)
T ss_pred HHHhhccCCcEEEEcchhh
Confidence 55554 4566999999854
No 232
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.16 E-value=0.029 Score=57.45 Aligned_cols=91 Identities=15% Similarity=0.202 Sum_probs=56.4
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhhccCCCCC------ceEEEEEeCCccChHHHHHHHHHHcCCCCC-------ccCC
Q 002538 176 SAGIIGLYGMGGVGKTTLLTRINNKFLESPSDF------DCVIWVVVSKDLQIEKNQEIIGKKIGLFDD-------SWKN 242 (911)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f------~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-------~~~~ 242 (911)
.-.++.|+|.+|+|||++|.+++... .... ..++|+.....++...+.+ +++......+ -...
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~---~~~~~~~g~~~~v~yi~~e~~~~~~rl~~-~~~~~~~~~~~~~~~i~~~~~ 93 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEA---QLPGELGGLEGKVVYIDTEGAFRPERLVQ-LAVRFGLDPEEVLDNIYVARP 93 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHh---hcccccCCCcceEEEEecCCCCCHHHHHH-HHHHhccchhhhhccEEEEeC
Confidence 45799999999999999999987765 1222 5789999887777655433 3333221100 0112
Q ss_pred CCHHHHHHHHHHHhh---c-ceEEEEEccccc
Q 002538 243 KNLDERALEIFKILR---E-KKFVLLLDDIWE 270 (911)
Q Consensus 243 ~~~~~~~~~l~~~L~---~-k~~LlVlDdv~~ 270 (911)
.+.++....+..... . +.-|||+|.+..
T Consensus 94 ~~~~~~~~~l~~~~~~~~~~~~~lvVIDsis~ 125 (226)
T cd01393 94 YNGEQQLEIVEELERIMSSGRVDLVVVDSVAA 125 (226)
T ss_pred CCHHHHHHHHHHHHHHhhcCCeeEEEEcCcch
Confidence 345555555555443 3 445899998853
No 233
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.16 E-value=0.16 Score=54.74 Aligned_cols=91 Identities=18% Similarity=0.227 Sum_probs=54.5
Q ss_pred cceEEEEEccccccc--ccccccCCCCCCCCCCCcEEEEEc-Cchhhhhc-cCCcceEEccCCCHHHHHHHHHHHhCCcc
Q 002538 258 EKKFVLLLDDIWERV--NLNKVGVPLPSPQSTTASKVVFTT-RFINVCGS-MEAHRNFKVECLTEKHAWELFQMKVGEET 333 (911)
Q Consensus 258 ~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~gs~IivTt-R~~~v~~~-~~~~~~~~l~~L~~~es~~Lf~~~a~~~~ 333 (911)
+++-++|+|+++... ....+...+. ....++.+|++| +-..+... .+-...+.+.+++.++..+.+... +.
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLE--EPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~-~~-- 205 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLE--EPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQ-GV-- 205 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhc--CCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHc-CC--
Confidence 455588899997642 3333333333 223456555554 44445432 334568899999999999888764 11
Q ss_pred cCCCccHHHHHHHHHHHhCCcchHHHHH
Q 002538 334 LKSHPHVFELAQVVAKECGGLPLALITI 361 (911)
Q Consensus 334 ~~~~~~~~~~~~~i~~~c~GlPLai~~~ 361 (911)
+. ...++..++|.|..+..+
T Consensus 206 ----~~----~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 206 ----AD----ADALLAEAGGAPLAALAL 225 (342)
T ss_pred ----Ch----HHHHHHHcCCCHHHHHHH
Confidence 11 123577889999855443
No 234
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.15 E-value=0.044 Score=62.19 Aligned_cols=170 Identities=15% Similarity=0.128 Sum_probs=87.9
Q ss_pred cccchHHHHHHHHHHh---cc-------CCceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCccChHHHH
Q 002538 157 IVKGLESTLEDVWRCL---VE-------ESAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDLQIEKNQ 226 (911)
Q Consensus 157 ~~~Gr~~~~~~l~~~L---~~-------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~ 226 (911)
.|.|.+..++.+.+.. .. ...+-|-++|++|+|||.+|+++++.. .-.| +-+..+ .
T Consensus 229 dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~---~~~~---~~l~~~------~-- 294 (489)
T CHL00195 229 DIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDW---QLPL---LRLDVG------K-- 294 (489)
T ss_pred HhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCCE---EEEEhH------H--
Confidence 4668777666655422 11 234578899999999999999999986 2222 112111 1
Q ss_pred HHHHHHcCCCCCccCCCCHHHHHHHHHHH-hhcceEEEEEcccccccc----cc----------cccCCCCCCCCCCCcE
Q 002538 227 EIIGKKIGLFDDSWKNKNLDERALEIFKI-LREKKFVLLLDDIWERVN----LN----------KVGVPLPSPQSTTASK 291 (911)
Q Consensus 227 ~~i~~~l~~~~~~~~~~~~~~~~~~l~~~-L~~k~~LlVlDdv~~~~~----~~----------~~~~~l~~~~~~~gs~ 291 (911)
+... +...+ +.....+.+. -...+++|++|+++.... .. .+...+. ....+--
T Consensus 295 --l~~~-------~vGes-e~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~--~~~~~V~ 362 (489)
T CHL00195 295 --LFGG-------IVGES-ESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLS--EKKSPVF 362 (489)
T ss_pred --hccc-------ccChH-HHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHh--cCCCceE
Confidence 1000 01111 1222222222 235789999999974210 00 0000011 1122334
Q ss_pred EEEEcCchhhhh-c----cCCcceEEccCCCHHHHHHHHHHHhCCcccCCCccHHHHHHHHHHHhCCc
Q 002538 292 VVFTTRFINVCG-S----MEAHRNFKVECLTEKHAWELFQMKVGEETLKSHPHVFELAQVVAKECGGL 354 (911)
Q Consensus 292 IivTtR~~~v~~-~----~~~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~Gl 354 (911)
||.||.+.+... . -.-+..+.+..-+.++-.++|+.+.......... ......+++.+.|.
T Consensus 363 vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~--~~dl~~La~~T~Gf 428 (489)
T CHL00195 363 VVATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWK--KYDIKKLSKLSNKF 428 (489)
T ss_pred EEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCccc--ccCHHHHHhhcCCC
Confidence 566776554321 1 1234678888889999889998876543211100 11234556666654
No 235
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.14 E-value=0.015 Score=59.47 Aligned_cols=89 Identities=19% Similarity=0.207 Sum_probs=52.8
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCccChHHHHHHHHHH----cCCCCCccCCCCHHH---H
Q 002538 176 SAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDLQIEKNQEIIGKK----IGLFDDSWKNKNLDE---R 248 (911)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~----l~~~~~~~~~~~~~~---~ 248 (911)
.-.++.|+|.+|+|||++|.+++.... ..-..++|++.. .++...+. +++.. +.....-....+..+ .
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~~~---~~~~~v~yi~~e-~~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVEAA---KNGKKVIYIDTE-GLSPERFK-QIAGEDFEELLSNIIIFEPSSFEEQSEA 96 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---HCCCeEEEEECC-CCCHHHHH-HHHhhChHhHhhCeEEEeCCCHHHHHHH
Confidence 457999999999999999999988762 335678999887 55554443 23222 000000001122222 2
Q ss_pred HHHHHHHhhcceEEEEEcccc
Q 002538 249 ALEIFKILREKKFVLLLDDIW 269 (911)
Q Consensus 249 ~~~l~~~L~~k~~LlVlDdv~ 269 (911)
...+...++.+.-++|+|.+.
T Consensus 97 i~~~~~~~~~~~~lvVIDsi~ 117 (225)
T PRK09361 97 IRKAEKLAKENVGLIVLDSAT 117 (225)
T ss_pred HHHHHHHHHhcccEEEEeCcH
Confidence 333444444566688889874
No 236
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.13 E-value=0.013 Score=62.21 Aligned_cols=87 Identities=20% Similarity=0.174 Sum_probs=57.2
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCccChHHHHHHHHHHcCCCCCc---cCCCCHHHHHHHH
Q 002538 176 SAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDLQIEKNQEIIGKKIGLFDDS---WKNKNLDERALEI 252 (911)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l 252 (911)
.-+++-|+|++|+||||||.+++... ...-..++|++....++.. .+++++...+. ....+.++....+
T Consensus 54 ~G~iteI~Gp~GsGKTtLal~~~~~~---~~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~ 125 (325)
T cd00983 54 KGRIIEIYGPESSGKTTLALHAIAEA---QKLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIA 125 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HHcCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHH
Confidence 45689999999999999999987766 2334678899877766653 34444443211 1223455555555
Q ss_pred HHHhh-cceEEEEEccccc
Q 002538 253 FKILR-EKKFVLLLDDIWE 270 (911)
Q Consensus 253 ~~~L~-~k~~LlVlDdv~~ 270 (911)
...++ +.--+||+|-|-.
T Consensus 126 ~~li~s~~~~lIVIDSvaa 144 (325)
T cd00983 126 DSLVRSGAVDLIVVDSVAA 144 (325)
T ss_pred HHHHhccCCCEEEEcchHh
Confidence 55554 3556999998853
No 237
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.08 E-value=0.032 Score=57.18 Aligned_cols=89 Identities=17% Similarity=0.207 Sum_probs=51.2
Q ss_pred HHHHHHHHhcc--CCceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCccChHHHHHHHHHHcCCCCCccC
Q 002538 164 TLEDVWRCLVE--ESAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDLQIEKNQEIIGKKIGLFDDSWK 241 (911)
Q Consensus 164 ~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~ 241 (911)
.+..+.++... .+...+.++|.+|+|||+||.++++... ..-..+++++ ..++...+...... .
T Consensus 84 al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~---~~g~~v~~it------~~~l~~~l~~~~~~-----~ 149 (244)
T PRK07952 84 ALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELL---LRGKSVLIIT------VADIMSAMKDTFSN-----S 149 (244)
T ss_pred HHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHH---hcCCeEEEEE------HHHHHHHHHHHHhh-----c
Confidence 34444444432 2345788999999999999999999872 2234556664 34444444433311 1
Q ss_pred CCCHHHHHHHHHHHhhcceEEEEEcccccc
Q 002538 242 NKNLDERALEIFKILREKKFVLLLDDIWER 271 (911)
Q Consensus 242 ~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~ 271 (911)
..+. ..+.+.+. +.=+|||||+...
T Consensus 150 ~~~~----~~~l~~l~-~~dlLvIDDig~~ 174 (244)
T PRK07952 150 ETSE----EQLLNDLS-NVDLLVIDEIGVQ 174 (244)
T ss_pred cccH----HHHHHHhc-cCCEEEEeCCCCC
Confidence 1111 22333344 3458889999643
No 238
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.06 E-value=0.11 Score=51.78 Aligned_cols=170 Identities=15% Similarity=0.237 Sum_probs=94.2
Q ss_pred cccchHHHHHH---HHHHhccC------CceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCccChHHHHH
Q 002538 157 IVKGLESTLED---VWRCLVEE------SAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDLQIEKNQE 227 (911)
Q Consensus 157 ~~~Gr~~~~~~---l~~~L~~~------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 227 (911)
.|+|.++.+.+ |++.|.+. ..+-|..+|++|.|||.+|+++++.. +-.| +-|. .-+
T Consensus 122 dViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~---kvp~---l~vk---------at~ 186 (368)
T COG1223 122 DVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEA---KVPL---LLVK---------ATE 186 (368)
T ss_pred hhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhccc---CCce---EEec---------hHH
Confidence 36698877654 67777653 57789999999999999999999987 2222 1111 111
Q ss_pred HHHHHcCCCCCccCCCCHHHHHHHHHHHh-hcceEEEEEcccccc----------ccccc----ccCCCCCCCCCCCcEE
Q 002538 228 IIGKKIGLFDDSWKNKNLDERALEIFKIL-REKKFVLLLDDIWER----------VNLNK----VGVPLPSPQSTTASKV 292 (911)
Q Consensus 228 ~i~~~l~~~~~~~~~~~~~~~~~~l~~~L-~~k~~LlVlDdv~~~----------~~~~~----~~~~l~~~~~~~gs~I 292 (911)
-|.+..+ +-...+..+.++- +.-++++.+|.++.. .+..+ +..-+.....+.|-..
T Consensus 187 liGehVG---------dgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvt 257 (368)
T COG1223 187 LIGEHVG---------DGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVT 257 (368)
T ss_pred HHHHHhh---------hHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEE
Confidence 1222111 1222333333332 346789999988642 11111 1111111133456556
Q ss_pred EEEcCchhhhhcc-C--CcceEEccCCCHHHHHHHHHHHhCCcccCCCccHHHHHHHHHHHhCCc
Q 002538 293 VFTTRFINVCGSM-E--AHRNFKVECLTEKHAWELFQMKVGEETLKSHPHVFELAQVVAKECGGL 354 (911)
Q Consensus 293 ivTtR~~~v~~~~-~--~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~Gl 354 (911)
|-.|.+++..... . -..-++..--+++|-.+++...+-......... .+.++++.+|.
T Consensus 258 IaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~----~~~~~~~t~g~ 318 (368)
T COG1223 258 IAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDAD----LRYLAAKTKGM 318 (368)
T ss_pred EeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCccccC----HHHHHHHhCCC
Confidence 6667666664322 1 123566666778888888888774332122222 35566666664
No 239
>PRK06696 uridine kinase; Validated
Probab=96.06 E-value=0.0092 Score=60.92 Aligned_cols=42 Identities=12% Similarity=0.261 Sum_probs=35.4
Q ss_pred chHHHHHHHHHHhcc---CCceEEEEEcCCCChHHHHHHHHHhhh
Q 002538 160 GLESTLEDVWRCLVE---ESAGIIGLYGMGGVGKTTLLTRINNKF 201 (911)
Q Consensus 160 Gr~~~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~ 201 (911)
.|++-+++|.+.+.. ++..+|+|.|.+|+||||+|+.+....
T Consensus 2 ~~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l 46 (223)
T PRK06696 2 SRKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEI 46 (223)
T ss_pred cHHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 466777788777753 467899999999999999999999886
No 240
>PRK04132 replication factor C small subunit; Provisional
Probab=96.04 E-value=0.071 Score=63.99 Aligned_cols=153 Identities=10% Similarity=0.036 Sum_probs=90.9
Q ss_pred CCCChHHHHHHHHHhhhccCCCCC-ceEEEEEeCCccChHHHHHHHHHHcCCCCCccCCCCHHHHHHHHHHHhhcceEEE
Q 002538 185 MGGVGKTTLLTRINNKFLESPSDF-DCVIWVVVSKDLQIEKNQEIIGKKIGLFDDSWKNKNLDERALEIFKILREKKFVL 263 (911)
Q Consensus 185 ~gGiGKTtLa~~v~~~~~~~~~~f-~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~k~~Ll 263 (911)
+.++||||+|.+++++. -. ..+ ..++-++.|...+...+.+.+-+...... . -..+.-++
T Consensus 574 Ph~lGKTT~A~ala~~l-~g-~~~~~~~lElNASd~rgid~IR~iIk~~a~~~~---~--------------~~~~~KVv 634 (846)
T PRK04132 574 PTVLHNTTAALALAREL-FG-ENWRHNFLELNASDERGINVIREKVKEFARTKP---I--------------GGASFKII 634 (846)
T ss_pred CCcccHHHHHHHHHHhh-hc-ccccCeEEEEeCCCcccHHHHHHHHHHHHhcCC---c--------------CCCCCEEE
Confidence 77899999999999986 11 222 34677777765555544433322221110 0 01245799
Q ss_pred EEccccccc--ccccccCCCCCCCCCCCcEEEEEcCch-hhhhc-cCCcceEEccCCCHHHHHHHHHHHhCCcccCCCcc
Q 002538 264 LLDDIWERV--NLNKVGVPLPSPQSTTASKVVFTTRFI-NVCGS-MEAHRNFKVECLTEKHAWELFQMKVGEETLKSHPH 339 (911)
Q Consensus 264 VlDdv~~~~--~~~~~~~~l~~~~~~~gs~IivTtR~~-~v~~~-~~~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~ 339 (911)
|+|+++... ....+...+. .....+++|++|.+. .+... .+....+++.+++.++-...+.+.+...... -
T Consensus 635 IIDEaD~Lt~~AQnALLk~lE--ep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~---i 709 (846)
T PRK04132 635 FLDEADALTQDAQQALRRTME--MFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLE---L 709 (846)
T ss_pred EEECcccCCHHHHHHHHHHhh--CCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCC---C
Confidence 999998653 3333333332 223355666655543 33322 2335688999999999888887765432211 1
Q ss_pred HHHHHHHHHHHhCCcch-HHHHH
Q 002538 340 VFELAQVVAKECGGLPL-ALITI 361 (911)
Q Consensus 340 ~~~~~~~i~~~c~GlPL-ai~~~ 361 (911)
-.+....|++.|+|.+- |+..+
T Consensus 710 ~~e~L~~Ia~~s~GDlR~AIn~L 732 (846)
T PRK04132 710 TEEGLQAILYIAEGDMRRAINIL 732 (846)
T ss_pred CHHHHHHHHHHcCCCHHHHHHHH
Confidence 24677899999999885 44444
No 241
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.02 E-value=0.12 Score=58.67 Aligned_cols=163 Identities=17% Similarity=0.132 Sum_probs=85.6
Q ss_pred cccchHHHHHHHHHHhcc-------------CCceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCccChH
Q 002538 157 IVKGLESTLEDVWRCLVE-------------ESAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDLQIE 223 (911)
Q Consensus 157 ~~~Gr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 223 (911)
.|=|.++-++++-+.+.- ...+-|-.+|++|.|||++|+++++.. ...|- .++..
T Consensus 435 dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~---~~nFl-----svkgp---- 502 (693)
T KOG0730|consen 435 DIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEA---GMNFL-----SVKGP---- 502 (693)
T ss_pred hccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhh---cCCee-----eccCH----
Confidence 353577777777655542 246678899999999999999999987 44552 11111
Q ss_pred HHHHHHHHHcCCCCCccCCCCHHHHHHHHHHHhhcceEEEEEcccccccc-------------cccccCCCCCCCCCC-C
Q 002538 224 KNQEIIGKKIGLFDDSWKNKNLDERALEIFKILREKKFVLLLDDIWERVN-------------LNKVGVPLPSPQSTT-A 289 (911)
Q Consensus 224 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~~-------------~~~~~~~l~~~~~~~-g 289 (911)
+++.. +-..++..+.....+.=+--..+|.||.++.... +..+..-+ ++.. .
T Consensus 503 EL~sk-----------~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEm---DG~e~~ 568 (693)
T KOG0730|consen 503 ELFSK-----------YVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEM---DGLEAL 568 (693)
T ss_pred HHHHH-----------hcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHc---cccccc
Confidence 11100 0111222222222222234568888888865311 11111111 2221 1
Q ss_pred cEEEE--Ec-Cchhhhh-ccC---CcceEEccCCCHHHHHHHHHHHhCCcccCCCccHHHHHH
Q 002538 290 SKVVF--TT-RFINVCG-SME---AHRNFKVECLTEKHAWELFQMKVGEETLKSHPHVFELAQ 345 (911)
Q Consensus 290 s~Iiv--Tt-R~~~v~~-~~~---~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~ 345 (911)
..|+| .| |...+.. -+. -++.+.+..-+.+--.++|+.++-.......-++++++.
T Consensus 569 k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~ 631 (693)
T KOG0730|consen 569 KNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQ 631 (693)
T ss_pred CcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHH
Confidence 22333 33 4333322 222 345667777777777899999987665444445555554
No 242
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.01 E-value=0.021 Score=70.19 Aligned_cols=60 Identities=25% Similarity=0.325 Sum_probs=43.7
Q ss_pred ccccchHHHHHHHHHHhccC---------CceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCC
Q 002538 156 AIVKGLESTLEDVWRCLVEE---------SAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSK 218 (911)
Q Consensus 156 ~~~~Gr~~~~~~l~~~L~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~ 218 (911)
..++|.+..++.+.+.+... ...++.++|+.|+|||++|+.+.... ...-...+.+..+.
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l---~~~~~~~i~~d~s~ 633 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFL---FDDEDAMVRIDMSE 633 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh---cCCCCcEEEEechh
Confidence 34779999999998888641 13578899999999999999999876 22223445555544
No 243
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.00 E-value=0.048 Score=66.82 Aligned_cols=45 Identities=29% Similarity=0.351 Sum_probs=36.3
Q ss_pred cccchHHHHHHHHHHhcc-------C--CceEEEEEcCCCChHHHHHHHHHhhh
Q 002538 157 IVKGLESTLEDVWRCLVE-------E--SAGIIGLYGMGGVGKTTLLTRINNKF 201 (911)
Q Consensus 157 ~~~Gr~~~~~~l~~~L~~-------~--~~~vi~I~G~gGiGKTtLa~~v~~~~ 201 (911)
.++|.+..++.+.+.+.. . ...++.++|+.|+|||++|+.+++..
T Consensus 569 ~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l 622 (857)
T PRK10865 569 RVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFM 622 (857)
T ss_pred eEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 467999998888887753 1 12478899999999999999999875
No 244
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=95.99 E-value=0.04 Score=54.60 Aligned_cols=196 Identities=17% Similarity=0.207 Sum_probs=103.8
Q ss_pred CCccccCCcccc--ccchHHHHHHHHHHhcc-------------CCceEEEEEcCCCChHHHHHHHHHhhhccCCCCCce
Q 002538 146 SSVADERPTEAI--VKGLESTLEDVWRCLVE-------------ESAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDC 210 (911)
Q Consensus 146 ~~~~~~~~~~~~--~~Gr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~ 210 (911)
...++++|++.+ +-|.++.++++++.+.- ...+-+..+|++|.|||-+|++.+... ...|-.
T Consensus 159 aMevDekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT---~aTFLK 235 (424)
T KOG0652|consen 159 AMEVDEKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQT---NATFLK 235 (424)
T ss_pred eeeeccCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhc---cchHHH
Confidence 345667777544 66899999999988742 135578899999999999999987765 344421
Q ss_pred EEEEEeCCccChHHHHHHHHHHcCCCCCccCCCCHHHHHHHHHHHhh-cceEEEEEccccccc----c------------
Q 002538 211 VIWVVVSKDLQIEKNQEIIGKKIGLFDDSWKNKNLDERALEIFKILR-EKKFVLLLDDIWERV----N------------ 273 (911)
Q Consensus 211 ~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~-~k~~LlVlDdv~~~~----~------------ 273 (911)
-+ .+.-++.-| .+-..+...-...-+ ..+.+|.+|.++... +
T Consensus 236 LA--------gPQLVQMfI-------------GdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRT 294 (424)
T KOG0652|consen 236 LA--------GPQLVQMFI-------------GDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRT 294 (424)
T ss_pred hc--------chHHHhhhh-------------cchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHH
Confidence 11 000011101 111112222222222 457888889875320 0
Q ss_pred cccccCCCCCCCCCCCcEEEEEcCchhhhh-----ccCCcceEEccCCCHHHHH-HHHHHHhCCcccCCCccHHHHHHHH
Q 002538 274 LNKVGVPLPSPQSTTASKVVFTTRFINVCG-----SMEAHRNFKVECLTEKHAW-ELFQMKVGEETLKSHPHVFELAQVV 347 (911)
Q Consensus 274 ~~~~~~~l~~~~~~~gs~IivTtR~~~v~~-----~~~~~~~~~l~~L~~~es~-~Lf~~~a~~~~~~~~~~~~~~~~~i 347 (911)
..++...+........-|||-.|..-++.. +-.-++.++. |+..+++. .+++-++...+...+-+++++++.-
T Consensus 295 MLELLNQLDGFss~~~vKviAATNRvDiLDPALlRSGRLDRKIEf-P~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsT 373 (424)
T KOG0652|consen 295 MLELLNQLDGFSSDDRVKVIAATNRVDILDPALLRSGRLDRKIEF-PHPNEEARARILQIHSRKMNVSDDVNFEELARST 373 (424)
T ss_pred HHHHHHhhcCCCCccceEEEeecccccccCHHHhhcccccccccC-CCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhcc
Confidence 011111121112234568888776666532 1122344444 34445554 5666666666556667788887654
Q ss_pred HHHhCCcchHHHHHHhhhc
Q 002538 348 AKECGGLPLALITIGRAMA 366 (911)
Q Consensus 348 ~~~c~GlPLai~~~g~~l~ 366 (911)
-..-|.--.|+-+=|+++.
T Consensus 374 ddFNGAQcKAVcVEAGMiA 392 (424)
T KOG0652|consen 374 DDFNGAQCKAVCVEAGMIA 392 (424)
T ss_pred cccCchhheeeehhhhHHH
Confidence 3333323334444455443
No 245
>PRK09354 recA recombinase A; Provisional
Probab=95.95 E-value=0.019 Score=61.55 Aligned_cols=87 Identities=17% Similarity=0.172 Sum_probs=58.6
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCccChHHHHHHHHHHcCCCCCc---cCCCCHHHHHHHH
Q 002538 176 SAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDLQIEKNQEIIGKKIGLFDDS---WKNKNLDERALEI 252 (911)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l 252 (911)
.-+++-|+|.+|+||||||.++.... ...-..++|+.....++.. .+++++...+. ....+.++....+
T Consensus 59 ~G~IteI~G~~GsGKTtLal~~~~~~---~~~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~ 130 (349)
T PRK09354 59 RGRIVEIYGPESSGKTTLALHAIAEA---QKAGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIA 130 (349)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HHcCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 45699999999999999999988776 2345678999888777653 45555543221 1223455555555
Q ss_pred HHHhh-cceEEEEEccccc
Q 002538 253 FKILR-EKKFVLLLDDIWE 270 (911)
Q Consensus 253 ~~~L~-~k~~LlVlDdv~~ 270 (911)
...++ ++--+||+|-|-.
T Consensus 131 ~~li~s~~~~lIVIDSvaa 149 (349)
T PRK09354 131 DTLVRSGAVDLIVVDSVAA 149 (349)
T ss_pred HHHhhcCCCCEEEEeChhh
Confidence 55554 3556999998853
No 246
>CHL00095 clpC Clp protease ATP binding subunit
Probab=95.95 E-value=0.018 Score=70.66 Aligned_cols=105 Identities=21% Similarity=0.245 Sum_probs=60.4
Q ss_pred ccccchHHHHHHHHHHhcc-------C--CceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCccChHHHH
Q 002538 156 AIVKGLESTLEDVWRCLVE-------E--SAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDLQIEKNQ 226 (911)
Q Consensus 156 ~~~~Gr~~~~~~l~~~L~~-------~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~ 226 (911)
..|+|.+..++.+.+.+.. . ....+.++|+.|+|||+||+.+++.. -..-...+-+..+.-.+...+.
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l---~~~~~~~~~~d~s~~~~~~~~~ 585 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYF---FGSEDAMIRLDMSEYMEKHTVS 585 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHh---cCCccceEEEEchhccccccHH
Confidence 4577999999999888752 1 13456789999999999999998875 1222334444444322222211
Q ss_pred HHHHHHcCCCCCccCCCCHHHHHHHHHHHhhcce-EEEEEcccccc
Q 002538 227 EIIGKKIGLFDDSWKNKNLDERALEIFKILREKK-FVLLLDDIWER 271 (911)
Q Consensus 227 ~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~k~-~LlVlDdv~~~ 271 (911)
+ -++.+. .....+. ...+.+.++.++ .+++||+++..
T Consensus 586 ~----l~g~~~-gyvg~~~---~~~l~~~~~~~p~~VvllDeieka 623 (821)
T CHL00095 586 K----LIGSPP-GYVGYNE---GGQLTEAVRKKPYTVVLFDEIEKA 623 (821)
T ss_pred H----hcCCCC-cccCcCc---cchHHHHHHhCCCeEEEECChhhC
Confidence 1 112111 0111111 123445555555 48999999754
No 247
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=95.94 E-value=0.03 Score=58.06 Aligned_cols=75 Identities=23% Similarity=0.245 Sum_probs=46.7
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCccChHHHHHHHHHHcCCCCCccCCCCHHHHHHHHHHH
Q 002538 176 SAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDLQIEKNQEIIGKKIGLFDDSWKNKNLDERALEIFKI 255 (911)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 255 (911)
+..-+.++|.+|+|||.||.++.++. - +.. -.+.+++ ..++..++....... ....++...
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l-~-~~g-~sv~f~~------~~el~~~Lk~~~~~~----------~~~~~l~~~ 164 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNEL-L-KAG-ISVLFIT------APDLLSKLKAAFDEG----------RLEEKLLRE 164 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHH-H-HcC-CeEEEEE------HHHHHHHHHHHHhcC----------chHHHHHHH
Confidence 67788999999999999999999998 2 233 3455554 445555555544321 111222222
Q ss_pred hhcceEEEEEccccc
Q 002538 256 LREKKFVLLLDDIWE 270 (911)
Q Consensus 256 L~~k~~LlVlDdv~~ 270 (911)
+. +-=||||||+-.
T Consensus 165 l~-~~dlLIiDDlG~ 178 (254)
T COG1484 165 LK-KVDLLIIDDIGY 178 (254)
T ss_pred hh-cCCEEEEecccC
Confidence 21 223899999954
No 248
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.94 E-value=0.0059 Score=57.12 Aligned_cols=42 Identities=31% Similarity=0.241 Sum_probs=31.5
Q ss_pred EEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCccChHHHHH
Q 002538 180 IGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDLQIEKNQE 227 (911)
Q Consensus 180 i~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 227 (911)
|.++|.+|+|||+||+.+++.. =....-+.++...+..++..
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~------~~~~~~i~~~~~~~~~dl~g 43 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL------GRPVIRINCSSDTTEEDLIG 43 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH------TCEEEEEE-TTTSTHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHh------hcceEEEEecccccccccee
Confidence 5699999999999999999886 12344567777777776653
No 249
>PRK05541 adenylylsulfate kinase; Provisional
Probab=95.93 E-value=0.016 Score=56.71 Aligned_cols=36 Identities=25% Similarity=0.507 Sum_probs=28.8
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEE
Q 002538 176 SAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWV 214 (911)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv 214 (911)
...+|.+.|+.|+||||+|+.+++.. ...+..++++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l---~~~~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERL---KLKYSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH---HHcCCcEEEE
Confidence 45689999999999999999999987 3445555555
No 250
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=95.93 E-value=0.095 Score=57.09 Aligned_cols=40 Identities=23% Similarity=0.453 Sum_probs=32.9
Q ss_pred HHHHHHHHHHhcc---CCceEEEEEcCCCChHHHHHHHHHhhh
Q 002538 162 ESTLEDVWRCLVE---ESAGIIGLYGMGGVGKTTLLTRINNKF 201 (911)
Q Consensus 162 ~~~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~ 201 (911)
+...+.+.+.+.+ +...+|+|.|.=|+||||+.+.+.+..
T Consensus 2 ~~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L 44 (325)
T PF07693_consen 2 KPYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEEL 44 (325)
T ss_pred hHHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4456667777765 367799999999999999999999887
No 251
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.93 E-value=0.038 Score=53.06 Aligned_cols=40 Identities=25% Similarity=0.453 Sum_probs=30.9
Q ss_pred EEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCccC
Q 002538 179 IIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDLQ 221 (911)
Q Consensus 179 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~ 221 (911)
++.|+|.+|+||||++..+.... ...-..++|+.......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~---~~~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNI---ATKGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHH---HhcCCEEEEEECCcchH
Confidence 46799999999999999998887 23445677887665543
No 252
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=95.92 E-value=0.067 Score=63.52 Aligned_cols=132 Identities=14% Similarity=0.090 Sum_probs=71.0
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCccChHHHHHHHHHHcCCCCCccCCCCHHHHHHHHHHHhh
Q 002538 178 GIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDLQIEKNQEIIGKKIGLFDDSWKNKNLDERALEIFKILR 257 (911)
Q Consensus 178 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~ 257 (911)
+-|.++|++|+||||+|+.+.+.. ...| +.+..+ .+.. .. .......+...+...-.
T Consensus 186 ~gill~G~~G~GKt~~~~~~a~~~---~~~f---~~is~~------~~~~----~~-------~g~~~~~~~~~f~~a~~ 242 (644)
T PRK10733 186 KGVLMVGPPGTGKTLLAKAIAGEA---KVPF---FTISGS------DFVE----MF-------VGVGASRVRDMFEQAKK 242 (644)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHc---CCCE---EEEehH------HhHH----hh-------hcccHHHHHHHHHHHHh
Confidence 358899999999999999998876 2233 222221 1111 00 01111222222233334
Q ss_pred cceEEEEEcccccccc------------c----ccccCCCCCCCCCCCcEEEEEcCchhhhhc-c----CCcceEEccCC
Q 002538 258 EKKFVLLLDDIWERVN------------L----NKVGVPLPSPQSTTASKVVFTTRFINVCGS-M----EAHRNFKVECL 316 (911)
Q Consensus 258 ~k~~LlVlDdv~~~~~------------~----~~~~~~l~~~~~~~gs~IivTtR~~~v~~~-~----~~~~~~~l~~L 316 (911)
..+.+|++|+++.... . ..+...+.......+.-||.||..++.... + .-++.+.+...
T Consensus 243 ~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~P 322 (644)
T PRK10733 243 AAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLP 322 (644)
T ss_pred cCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCC
Confidence 5678999999975311 0 111111110012334455667776665321 1 12467788888
Q ss_pred CHHHHHHHHHHHhCCc
Q 002538 317 TEKHAWELFQMKVGEE 332 (911)
Q Consensus 317 ~~~es~~Lf~~~a~~~ 332 (911)
+.++-.++++.+....
T Consensus 323 d~~~R~~Il~~~~~~~ 338 (644)
T PRK10733 323 DVRGREQILKVHMRRV 338 (644)
T ss_pred CHHHHHHHHHHHhhcC
Confidence 8888888888776543
No 253
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=95.92 E-value=0.013 Score=71.46 Aligned_cols=46 Identities=26% Similarity=0.337 Sum_probs=37.7
Q ss_pred ccccchHHHHHHHHHHhcc-------C--CceEEEEEcCCCChHHHHHHHHHhhh
Q 002538 156 AIVKGLESTLEDVWRCLVE-------E--SAGIIGLYGMGGVGKTTLLTRINNKF 201 (911)
Q Consensus 156 ~~~~Gr~~~~~~l~~~L~~-------~--~~~vi~I~G~gGiGKTtLa~~v~~~~ 201 (911)
..|+|.+..++.+.+.+.. . ...++.++|+.|+|||.+|+.++...
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l 620 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELL 620 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 3578999999999888742 1 23478999999999999999998876
No 254
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=95.92 E-value=0.064 Score=60.44 Aligned_cols=185 Identities=15% Similarity=0.128 Sum_probs=102.9
Q ss_pred cccchHHHHHHHHHHhccCCc-eEEEEEcCCCChHHHHHHHHHhhhccCC-CCCceEEEEEeCCccChHHHHHHHHHHcC
Q 002538 157 IVKGLESTLEDVWRCLVEESA-GIIGLYGMGGVGKTTLLTRINNKFLESP-SDFDCVIWVVVSKDLQIEKNQEIIGKKIG 234 (911)
Q Consensus 157 ~~~Gr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 234 (911)
.++|.+.-+..+.+.+..++. .-....|.-|+||||+|+.++....-.. ...+. ++.-..=+.|...-.
T Consensus 17 evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~eP---------C~~C~~Ck~I~~g~~ 87 (515)
T COG2812 17 DVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEP---------CGKCISCKEINEGSL 87 (515)
T ss_pred HhcccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCc---------chhhhhhHhhhcCCc
Confidence 357999999999999987653 4667889999999999999887752111 11111 110000012211100
Q ss_pred CCC---CccCCCCHHHHHHHHHHHh-----hcceEEEEEccccc--ccccccccCCCCCCCCCCCcEEEEEcCch-hh-h
Q 002538 235 LFD---DSWKNKNLDERALEIFKIL-----REKKFVLLLDDIWE--RVNLNKVGVPLPSPQSTTASKVVFTTRFI-NV-C 302 (911)
Q Consensus 235 ~~~---~~~~~~~~~~~~~~l~~~L-----~~k~~LlVlDdv~~--~~~~~~~~~~l~~~~~~~gs~IivTtR~~-~v-~ 302 (911)
... +.-.....++. +.|.+.. ++|-=+.|+|+|.- ...|..+...+. .....-+.|+.|++. .+ .
T Consensus 88 ~DviEiDaASn~gVddi-R~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLE--EPP~hV~FIlATTe~~Kip~ 164 (515)
T COG2812 88 IDVIEIDAASNTGVDDI-REIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLE--EPPSHVKFILATTEPQKIPN 164 (515)
T ss_pred ccchhhhhhhccChHHH-HHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccc--cCccCeEEEEecCCcCcCch
Confidence 000 00011122222 2222222 34555899999964 344555544443 222345555555444 44 2
Q ss_pred hccCCcceEEccCCCHHHHHHHHHHHhCCcccCCCccHHHHHHHHHHHhCCcch
Q 002538 303 GSMEAHRNFKVECLTEKHAWELFQMKVGEETLKSHPHVFELAQVVAKECGGLPL 356 (911)
Q Consensus 303 ~~~~~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~GlPL 356 (911)
...+..+.|.++.++.++-...+...+...... ..++....|++..+|..-
T Consensus 165 TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~---~e~~aL~~ia~~a~Gs~R 215 (515)
T COG2812 165 TILSRCQRFDFKRLDLEEIAKHLAAILDKEGIN---IEEDALSLIARAAEGSLR 215 (515)
T ss_pred hhhhccccccccCCCHHHHHHHHHHHHHhcCCc---cCHHHHHHHHHHcCCChh
Confidence 334556789999999999888888877654422 224555667777776443
No 255
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=95.87 E-value=0.036 Score=56.40 Aligned_cols=43 Identities=16% Similarity=0.221 Sum_probs=33.2
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCccC
Q 002538 176 SAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDLQ 221 (911)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~ 221 (911)
.-.++.|.|.+|+||||+|.+++... ...-..++|++....+.
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~~---~~~g~~v~yi~~e~~~~ 60 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVET---AGQGKKVAYIDTEGLSS 60 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HhcCCeEEEEECCCCCH
Confidence 45799999999999999999998876 23345678887655543
No 256
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=95.86 E-value=0.068 Score=62.85 Aligned_cols=154 Identities=17% Similarity=0.160 Sum_probs=90.1
Q ss_pred cccchHHHHHHHHHHhccCCceEEEEEcCCCChHHHHHHHHHhhhccCCCCC-----ceEEEEEeCCccChHHHHHHHHH
Q 002538 157 IVKGLESTLEDVWRCLVEESAGIIGLYGMGGVGKTTLLTRINNKFLESPSDF-----DCVIWVVVSKDLQIEKNQEIIGK 231 (911)
Q Consensus 157 ~~~Gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f-----~~~~wv~~s~~~~~~~~~~~i~~ 231 (911)
.++||+++++++++-|....-.--.++|.+|+|||++|.-++.+. +.+.- +..++. -++..
T Consensus 171 PvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rI--v~g~VP~~L~~~~i~s------------LD~g~ 236 (786)
T COG0542 171 PVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRI--VNGDVPESLKDKRIYS------------LDLGS 236 (786)
T ss_pred CCcChHHHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHHHH--hcCCCCHHHcCCEEEE------------ecHHH
Confidence 356999999999999987533333468999999999998888876 12211 111111 01111
Q ss_pred HcCCCCCccCCCCHHHHHHHHHHHhh-cceEEEEEccccccc----------ccccccCCCCCCCCCCCcEEEEEcCchh
Q 002538 232 KIGLFDDSWKNKNLDERALEIFKILR-EKKFVLLLDDIWERV----------NLNKVGVPLPSPQSTTASKVVFTTRFIN 300 (911)
Q Consensus 232 ~l~~~~~~~~~~~~~~~~~~l~~~L~-~k~~LlVlDdv~~~~----------~~~~~~~~l~~~~~~~gs~IivTtR~~~ 300 (911)
-... ..-..+.+++...+.+.++ .++..|.+|.+.... +-..+..|-. ..+.---|--||=++.
T Consensus 237 LvAG---akyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaL--ARGeL~~IGATT~~EY 311 (786)
T COG0542 237 LVAG---AKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPAL--ARGELRCIGATTLDEY 311 (786)
T ss_pred Hhcc---ccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHH--hcCCeEEEEeccHHHH
Confidence 1110 1134567777777777775 458999999986531 1122222221 2222223445665443
Q ss_pred hh------hccCCcceEEccCCCHHHHHHHHHHHh
Q 002538 301 VC------GSMEAHRNFKVECLTEKHAWELFQMKV 329 (911)
Q Consensus 301 v~------~~~~~~~~~~l~~L~~~es~~Lf~~~a 329 (911)
-- .-....+.+.+...+.+++..+++-..
T Consensus 312 Rk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk 346 (786)
T COG0542 312 RKYIEKDAALERRFQKVLVDEPSVEDTIAILRGLK 346 (786)
T ss_pred HHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHHH
Confidence 31 111234678899999999999887554
No 257
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=95.80 E-value=0.019 Score=54.26 Aligned_cols=117 Identities=21% Similarity=0.138 Sum_probs=59.8
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCC---ccChHHHHHHHHHHcC---CCC-CccCCCCHHHH--
Q 002538 178 GIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSK---DLQIEKNQEIIGKKIG---LFD-DSWKNKNLDER-- 248 (911)
Q Consensus 178 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~---~~~~~~~~~~i~~~l~---~~~-~~~~~~~~~~~-- 248 (911)
..|-|++..|.||||+|...+-+. ..+--.+.++..-+ .......++.+- .+. ... ..+...+..+.
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra---~~~g~~v~~vQFlKg~~~~gE~~~l~~l~-~v~~~~~g~~~~~~~~~~~~~~~ 78 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRA---LGHGYRVGVVQFLKGGWKYGELKALERLP-NIEIHRMGRGFFWTTENDEEDIA 78 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH---HHCCCeEEEEEEeCCCCccCHHHHHHhCC-CcEEEECCCCCccCCCChHHHHH
Confidence 578899999999999999888776 22223344433222 234444444431 010 000 00111122111
Q ss_pred -----HHHHHHHhhcce-EEEEEcccccc-----cccccccCCCCCCCCCCCcEEEEEcCchh
Q 002538 249 -----ALEIFKILREKK-FVLLLDDIWER-----VNLNKVGVPLPSPQSTTASKVVFTTRFIN 300 (911)
Q Consensus 249 -----~~~l~~~L~~k~-~LlVlDdv~~~-----~~~~~~~~~l~~~~~~~gs~IivTtR~~~ 300 (911)
....++.+.... =|||||++-.. .+.+++...+. ....+.-||+|.|+..
T Consensus 79 ~a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~--~rp~~~evIlTGr~~p 139 (159)
T cd00561 79 AAAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLK--AKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHH--cCCCCCEEEEECCCCC
Confidence 122233344434 49999998543 22333333333 3334678999999754
No 258
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.80 E-value=0.00055 Score=68.21 Aligned_cols=96 Identities=26% Similarity=0.226 Sum_probs=59.2
Q ss_pred cceEEEeecCCcccCCCCCCCCCccEEEcccCcccccChhhhccCCCCcEEEccCCCCcccC--ccccCcCCCCEEeccC
Q 002538 518 KVKRLLLMKNHIKHLPDIPTCPHLLTLFLSHNQLRWISEDFFQFMPSLKVLNLSFTKRHKFP--SGISKLASLQLIDLSY 595 (911)
Q Consensus 518 ~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~lp--~~i~~l~~L~~L~L~~ 595 (911)
+++.|++.++.+..+.-..+++.|++|.|+-|.++.+.+ |..|+.|+.|.|..|.|..+- .-+.++++|+.|.|..
T Consensus 20 ~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~E 97 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDE 97 (388)
T ss_pred HhhhhcccCCCccHHHHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhcc
Confidence 455566666666555445566667777777776665544 566777777777777666553 2345677777777766
Q ss_pred CCcCC-cc-----hhhhccCcCcEEe
Q 002538 596 TSIRG-LP-----EELKALINLKCLN 615 (911)
Q Consensus 596 ~~i~~-lp-----~~l~~L~~L~~L~ 615 (911)
|.-.. -+ .-+..|+||+.||
T Consensus 98 NPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 98 NPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred CCcccccchhHHHHHHHHcccchhcc
Confidence 53322 11 2356777777775
No 259
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.79 E-value=0.025 Score=55.79 Aligned_cols=79 Identities=19% Similarity=0.206 Sum_probs=46.1
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCccChHHHHHHHHHHcCCCCCccCCCCHHHHHHHHHHH
Q 002538 176 SAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDLQIEKNQEIIGKKIGLFDDSWKNKNLDERALEIFKI 255 (911)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 255 (911)
++-+|||-|.+|.||||+|+.++... ....-.+ ++-. ++-...-.....+.....-+....-+.+-+.+.|...
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~---~~~~~~~--I~~D-~YYk~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~L 80 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQL---GVEKVVV--ISLD-DYYKDQSHLPFEERNKINYDHPEAFDLDLLIEHLKDL 80 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHh---CcCcceE--eecc-ccccchhhcCHhhcCCcCccChhhhcHHHHHHHHHHH
Confidence 45799999999999999999999987 2222111 1110 1111111111111222222233455777788888888
Q ss_pred hhcce
Q 002538 256 LREKK 260 (911)
Q Consensus 256 L~~k~ 260 (911)
+++++
T Consensus 81 ~~g~~ 85 (218)
T COG0572 81 KQGKP 85 (218)
T ss_pred HcCCc
Confidence 88887
No 260
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.76 E-value=0.013 Score=58.43 Aligned_cols=67 Identities=15% Similarity=0.110 Sum_probs=31.8
Q ss_pred ccccccccceEeeccccccceeEecccCccccccccccCCccCEEEEecCCCCCCCc------cc--ccCCCcceEeEec
Q 002538 719 ALADLKHLKKLCISQCEELEELKIDCTGEVKRMCQPYIFRSLNKVQIYSCPVLKDLT------FL--VFAPNLKSIDVRS 790 (911)
Q Consensus 719 ~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~------~l--~~l~~L~~L~L~~ 790 (911)
.+..+.+|+.|+|.++.... .....++ ......+.|+.|.+.+| -++.-. .+ ...|+|..|....
T Consensus 209 gl~y~~~LevLDlqDNtft~-~gS~~La-----~al~~W~~lrEL~lnDC-lls~~G~~~v~~~f~e~~~p~l~~L~~~Y 281 (388)
T COG5238 209 GLFYSHSLEVLDLQDNTFTL-EGSRYLA-----DALCEWNLLRELRLNDC-LLSNEGVKSVLRRFNEKFVPNLMPLPGDY 281 (388)
T ss_pred HHHHhCcceeeeccccchhh-hhHHHHH-----HHhcccchhhhccccch-hhccccHHHHHHHhhhhcCCCccccccch
Confidence 34456777777777653221 0111000 00012456777777777 233210 01 1356777776665
Q ss_pred cc
Q 002538 791 CS 792 (911)
Q Consensus 791 c~ 792 (911)
+.
T Consensus 282 ne 283 (388)
T COG5238 282 NE 283 (388)
T ss_pred hh
Confidence 44
No 261
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.73 E-value=0.026 Score=63.95 Aligned_cols=74 Identities=26% Similarity=0.219 Sum_probs=49.7
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCcc--ChHHHHHHHHHHcCCCCCccCCCCHHHHHHHHH
Q 002538 176 SAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDL--QIEKNQEIIGKKIGLFDDSWKNKNLDERALEIF 253 (911)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 253 (911)
...-|.|.|..|+|||+||+++++.. . +.+.-.+..|+++.-- ..+.+++.+. ....
T Consensus 430 ~~~~Ill~G~~GsGKT~L~kal~~~~-~-k~~~~hv~~v~Cs~l~~~~~e~iQk~l~-------------------~vfs 488 (952)
T KOG0735|consen 430 RHGNILLNGPKGSGKTNLVKALFDYY-S-KDLIAHVEIVSCSTLDGSSLEKIQKFLN-------------------NVFS 488 (952)
T ss_pred ccccEEEeCCCCCCHhHHHHHHHHHh-c-cccceEEEEEechhccchhHHHHHHHHH-------------------HHHH
Confidence 44578899999999999999999998 3 5566667777766421 1222222221 1222
Q ss_pred HHhhcceEEEEEccccc
Q 002538 254 KILREKKFVLLLDDIWE 270 (911)
Q Consensus 254 ~~L~~k~~LlVlDdv~~ 270 (911)
..+...+.+|||||++-
T Consensus 489 e~~~~~PSiIvLDdld~ 505 (952)
T KOG0735|consen 489 EALWYAPSIIVLDDLDC 505 (952)
T ss_pred HHHhhCCcEEEEcchhh
Confidence 34556789999999964
No 262
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.73 E-value=0.047 Score=55.54 Aligned_cols=129 Identities=16% Similarity=0.147 Sum_probs=72.4
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCC-----ccChHHHHHHHHHHcCCCCCcc----CCCCH
Q 002538 175 ESAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSK-----DLQIEKNQEIIGKKIGLFDDSW----KNKNL 245 (911)
Q Consensus 175 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~-----~~~~~~~~~~i~~~l~~~~~~~----~~~~~ 245 (911)
.+..+++++|.+|.||||+++.+..-. ..-.+.+++...+ .....+-..++++.+++..+.. ..-+-
T Consensus 37 ~~ge~~glVGESG~GKSTlgr~i~~L~----~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSG 112 (268)
T COG4608 37 KEGETLGLVGESGCGKSTLGRLILGLE----EPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSG 112 (268)
T ss_pred cCCCEEEEEecCCCCHHHHHHHHHcCc----CCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCc
Confidence 356799999999999999999998765 2222333333221 1123334555666666543211 11122
Q ss_pred HHH-HHHHHHHhhcceEEEEEccccccccc---ccccCCCCCCCCCCCcEEEEEcCchhhhhccCC
Q 002538 246 DER-ALEIFKILREKKFVLLLDDIWERVNL---NKVGVPLPSPQSTTASKVVFTTRFINVCGSMEA 307 (911)
Q Consensus 246 ~~~-~~~l~~~L~~k~~LlVlDdv~~~~~~---~~~~~~l~~~~~~~gs~IivTtR~~~v~~~~~~ 307 (911)
.++ .-.+.+.|.-+.-++|.|+.-+.-+. ..+...+.......|-..++-|-+-.|+..+..
T Consensus 113 GQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isd 178 (268)
T COG4608 113 GQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISD 178 (268)
T ss_pred hhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcc
Confidence 222 23466778899999999987543221 111110100022335567888888777766543
No 263
>PRK08939 primosomal protein DnaI; Reviewed
Probab=95.70 E-value=0.048 Score=58.13 Aligned_cols=116 Identities=22% Similarity=0.206 Sum_probs=64.1
Q ss_pred chHHHHHHHHHHhcc----CCceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCccChHHHHHHHHHHcCC
Q 002538 160 GLESTLEDVWRCLVE----ESAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDLQIEKNQEIIGKKIGL 235 (911)
Q Consensus 160 Gr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 235 (911)
++........+++.. ...+-+.++|..|+|||.||.++++... ...+ .+.+++++ .+...+......
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~--~~g~-~v~~~~~~------~l~~~lk~~~~~ 205 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELA--KKGV-SSTLLHFP------EFIRELKNSISD 205 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHH--HcCC-CEEEEEHH------HHHHHHHHHHhc
Confidence 444444445555542 2456799999999999999999999982 2333 35566543 444555444321
Q ss_pred CCCccCCCCHHHHHHHHHHHhhcceEEEEEcccccc--ccccc--ccCCCCCCCC-CCCcEEEEEcC
Q 002538 236 FDDSWKNKNLDERALEIFKILREKKFVLLLDDIWER--VNLNK--VGVPLPSPQS-TTASKVVFTTR 297 (911)
Q Consensus 236 ~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~--~~~~~--~~~~l~~~~~-~~gs~IivTtR 297 (911)
.+.... .+.+ .+-=||||||+... .+|.. +...+.. .. ..+-.+|+||-
T Consensus 206 -------~~~~~~----l~~l-~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~-~R~~~~~~ti~TSN 259 (306)
T PRK08939 206 -------GSVKEK----IDAV-KEAPVLMLDDIGAEQMSSWVRDEVLGVILQ-YRMQEELPTFFTSN 259 (306)
T ss_pred -------CcHHHH----HHHh-cCCCEEEEecCCCccccHHHHHHHHHHHHH-HHHHCCCeEEEECC
Confidence 111211 1222 24558999999543 34432 3222110 11 23456888886
No 264
>PRK06547 hypothetical protein; Provisional
Probab=95.68 E-value=0.015 Score=56.25 Aligned_cols=36 Identities=22% Similarity=0.168 Sum_probs=29.2
Q ss_pred HHHHHHhccCCceEEEEEcCCCChHHHHHHHHHhhh
Q 002538 166 EDVWRCLVEESAGIIGLYGMGGVGKTTLLTRINNKF 201 (911)
Q Consensus 166 ~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 201 (911)
+.+...+......+|+|.|.+|+||||+|+.+.+..
T Consensus 4 ~~~~~~~~~~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 4 ALIAARLCGGGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred HHHHHHhhcCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 334445556678899999999999999999998875
No 265
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.66 E-value=0.034 Score=51.06 Aligned_cols=101 Identities=19% Similarity=0.306 Sum_probs=34.7
Q ss_pred CCCCCccEEEcccCcccccChhhhccCCCCcEEEccCCCCcccC-ccccCcCCCCEEeccCCCcCCcch-hhhccCcCcE
Q 002538 536 PTCPHLLTLFLSHNQLRWISEDFFQFMPSLKVLNLSFTKRHKFP-SGISKLASLQLIDLSYTSIRGLPE-ELKALINLKC 613 (911)
Q Consensus 536 ~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~lp-~~i~~l~~L~~L~L~~~~i~~lp~-~l~~L~~L~~ 613 (911)
..|++|+.+.+.. .+..+....|.++.+|+.+.+..+ +..++ ..+..+.+|+.+.+.. .+..++. .+..+.+|+.
T Consensus 9 ~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~ 85 (129)
T PF13306_consen 9 YNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKN 85 (129)
T ss_dssp TT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECE
T ss_pred hCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccc
Confidence 3444444444442 244444444444444555554442 33332 2334444455555433 2322222 2333445555
Q ss_pred EecCCCccccccChhhhccCccCcEEEec
Q 002538 614 LNLDQTKFLVTIPRHLISSFSMLHVLRMF 642 (911)
Q Consensus 614 L~L~~~~~l~~lp~~~i~~l~~L~~L~l~ 642 (911)
+++..+ +..++...+.++ +|+.+.+.
T Consensus 86 i~~~~~--~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 86 IDIPSN--ITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp EEETTT---BEEHTTTTTT--T--EEE-T
T ss_pred cccCcc--ccEEchhhhcCC-CceEEEEC
Confidence 555432 334444434444 45554443
No 266
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.65 E-value=0.094 Score=58.64 Aligned_cols=154 Identities=16% Similarity=0.182 Sum_probs=86.5
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCccChHHHHHHHHHHcCCCCCccCCCCHHHHHHHHHHH
Q 002538 176 SAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDLQIEKNQEIIGKKIGLFDDSWKNKNLDERALEIFKI 255 (911)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 255 (911)
...-|.+||++|+|||-||++|+|+. .-.| ++|-.. +++... ...+...+.....+.
T Consensus 544 ~PsGvLL~GPPGCGKTLlAKAVANEa---g~NF-----isVKGP----ELlNkY-----------VGESErAVR~vFqRA 600 (802)
T KOG0733|consen 544 APSGVLLCGPPGCGKTLLAKAVANEA---GANF-----ISVKGP----ELLNKY-----------VGESERAVRQVFQRA 600 (802)
T ss_pred CCCceEEeCCCCccHHHHHHHHhhhc---cCce-----EeecCH----HHHHHH-----------hhhHHHHHHHHHHHh
Confidence 34568899999999999999999997 4444 222221 111111 112222222222223
Q ss_pred hhcceEEEEEccccccc-------c------cccccCCCCCCCCCCCcEEEEEcCchhhhh--ccC---CcceEEccCCC
Q 002538 256 LREKKFVLLLDDIWERV-------N------LNKVGVPLPSPQSTTASKVVFTTRFINVCG--SME---AHRNFKVECLT 317 (911)
Q Consensus 256 L~~k~~LlVlDdv~~~~-------~------~~~~~~~l~~~~~~~gs~IivTtR~~~v~~--~~~---~~~~~~l~~L~ 317 (911)
=..-+++|.||.++... . ...+..-+.......|--||-.|..+++.. .+. -+...-+..-+
T Consensus 601 R~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn 680 (802)
T KOG0733|consen 601 RASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPN 680 (802)
T ss_pred hcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCC
Confidence 34578999999997531 1 111111121112345666777776676632 111 24566777888
Q ss_pred HHHHHHHHHHHhCC--cccCCCccHHHHHHHHHHHhCCc
Q 002538 318 EKHAWELFQMKVGE--ETLKSHPHVFELAQVVAKECGGL 354 (911)
Q Consensus 318 ~~es~~Lf~~~a~~--~~~~~~~~~~~~~~~i~~~c~Gl 354 (911)
.+|=..+++...-. .....+-++.+++.. .+|.|.
T Consensus 681 ~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~--~~c~gf 717 (802)
T KOG0733|consen 681 AEERVAILKTITKNTKPPLSSDVDLDEIARN--TKCEGF 717 (802)
T ss_pred HHHHHHHHHHHhccCCCCCCcccCHHHHhhc--ccccCC
Confidence 88888888887763 222344567666653 355554
No 267
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=95.65 E-value=0.3 Score=57.69 Aligned_cols=105 Identities=24% Similarity=0.335 Sum_probs=65.9
Q ss_pred ccccchHHHHHHHHHHhcc-------C--CceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCccChHHHH
Q 002538 156 AIVKGLESTLEDVWRCLVE-------E--SAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDLQIEKNQ 226 (911)
Q Consensus 156 ~~~~Gr~~~~~~l~~~L~~-------~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~ 226 (911)
..|+|.+..++.+.+.+.. . ...+....|+.|||||.||++++... -+.=+..+-+..|.-.....+
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~L---fg~e~aliR~DMSEy~EkHsV- 566 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEAL---FGDEQALIRIDMSEYMEKHSV- 566 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHh---cCCCccceeechHHHHHHHHH-
Confidence 3477999999999888853 1 34577789999999999999998876 222245555555443222222
Q ss_pred HHHHHHcCCCCCccCCCCHHHHHHHHHHHhhcceE-EEEEcccccc
Q 002538 227 EIIGKKIGLFDDSWKNKNLDERALEIFKILREKKF-VLLLDDIWER 271 (911)
Q Consensus 227 ~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~k~~-LlVlDdv~~~ 271 (911)
.+-++.+.. + ...++ -..|-+.++.++| +|.||+|...
T Consensus 567 ---SrLIGaPPG-Y--VGyee-GG~LTEaVRr~PySViLlDEIEKA 605 (786)
T COG0542 567 ---SRLIGAPPG-Y--VGYEE-GGQLTEAVRRKPYSVILLDEIEKA 605 (786)
T ss_pred ---HHHhCCCCC-C--ceecc-ccchhHhhhcCCCeEEEechhhhc
Confidence 222233221 1 11111 3456667778888 8888999764
No 268
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.65 E-value=0.046 Score=57.82 Aligned_cols=88 Identities=24% Similarity=0.337 Sum_probs=47.5
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCc-cChHHHHHHHHHHcCCCCCccCCCCHHHHHHHHHH
Q 002538 176 SAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKD-LQIEKNQEIIGKKIGLFDDSWKNKNLDERALEIFK 254 (911)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 254 (911)
+.++++|+|.+|+||||++..++... ..+..-..+..++.... ......+....+.++.+.. ...+...+...+..
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~-~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~--~~~~~~~l~~~l~~ 269 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARF-VLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVK--VARDPKELRKALDR 269 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH-HHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCcee--ccCCHHHHHHHHHH
Confidence 45799999999999999999998876 22211134555554321 1122333344444444321 12233444433333
Q ss_pred HhhcceEEEEEccc
Q 002538 255 ILREKKFVLLLDDI 268 (911)
Q Consensus 255 ~L~~k~~LlVlDdv 268 (911)
+.+ .=+|++|..
T Consensus 270 -~~~-~d~vliDt~ 281 (282)
T TIGR03499 270 -LRD-KDLILIDTA 281 (282)
T ss_pred -ccC-CCEEEEeCC
Confidence 333 347777753
No 269
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=95.65 E-value=0.039 Score=58.94 Aligned_cols=92 Identities=17% Similarity=0.218 Sum_probs=57.0
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhhccCC----CCCceEEEEEeCCccChHHHHHHHHHHcCCCCCcc-------CCCC
Q 002538 176 SAGIIGLYGMGGVGKTTLLTRINNKFLESP----SDFDCVIWVVVSKDLQIEKNQEIIGKKIGLFDDSW-------KNKN 244 (911)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~-------~~~~ 244 (911)
..+++-|+|.+|+|||+++.+++-.. ... ..-..++|++....|+.+.+.+ +++.++...+.. ...+
T Consensus 95 ~G~iteI~G~~GsGKTql~lqla~~~-~~~~~~gg~~~~vvYIdtE~~f~~eRi~~-~a~~~g~d~~~~l~~i~~~~~~~ 172 (313)
T TIGR02238 95 SMSITEVFGEFRCGKTQLSHTLCVTA-QLPREMGGGNGKVAYIDTEGTFRPDRIRA-IAERFGVDPDAVLDNILYARAYT 172 (313)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHH-hcchhhcCCCCeEEEEEcCCCCCHHHHHH-HHHHcCCChHHhcCcEEEecCCC
Confidence 45689999999999999998876433 111 1234799999998888887754 566665532210 1123
Q ss_pred HHHHH---HHHHHHhh-cceEEEEEcccc
Q 002538 245 LDERA---LEIFKILR-EKKFVLLLDDIW 269 (911)
Q Consensus 245 ~~~~~---~~l~~~L~-~k~~LlVlDdv~ 269 (911)
.++.. ..+...+. ++--|||+|-+-
T Consensus 173 ~e~~~~~l~~l~~~i~~~~~~LvVIDSis 201 (313)
T TIGR02238 173 SEHQMELLDYLAAKFSEEPFRLLIVDSIM 201 (313)
T ss_pred HHHHHHHHHHHHHHhhccCCCEEEEEcch
Confidence 33333 33333343 344588888874
No 270
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=95.64 E-value=0.058 Score=58.76 Aligned_cols=44 Identities=20% Similarity=0.272 Sum_probs=35.5
Q ss_pred ccchHHHHHHHHHHhcc-CCceE-EEEEcCCCChHHHHHHHHHhhh
Q 002538 158 VKGLESTLEDVWRCLVE-ESAGI-IGLYGMGGVGKTTLLTRINNKF 201 (911)
Q Consensus 158 ~~Gr~~~~~~l~~~L~~-~~~~v-i~I~G~gGiGKTtLa~~v~~~~ 201 (911)
++|-+....++..+..+ ++.+. +-++|+.|+||||+|..+++..
T Consensus 3 ~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l 48 (325)
T COG0470 3 LVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKEL 48 (325)
T ss_pred cccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHH
Confidence 34667777778777774 45565 9999999999999999999886
No 271
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.64 E-value=0.023 Score=64.64 Aligned_cols=73 Identities=25% Similarity=0.322 Sum_probs=53.0
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCccChHHHHHHHHHHcCCCCCccCCCCHHHHHHHHHHH
Q 002538 176 SAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDLQIEKNQEIIGKKIGLFDDSWKNKNLDERALEIFKI 255 (911)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 255 (911)
.-+++-++|++|+||||||.-+++.. .| .++-+..|..-+...+-+.|...+.... .
T Consensus 325 ~kKilLL~GppGlGKTTLAHViAkqa-----GY-sVvEINASDeRt~~~v~~kI~~avq~~s-----------------~ 381 (877)
T KOG1969|consen 325 PKKILLLCGPPGLGKTTLAHVIAKQA-----GY-SVVEINASDERTAPMVKEKIENAVQNHS-----------------V 381 (877)
T ss_pred ccceEEeecCCCCChhHHHHHHHHhc-----Cc-eEEEecccccccHHHHHHHHHHHHhhcc-----------------c
Confidence 45799999999999999999998875 23 3677888877777776666665554321 1
Q ss_pred h--hcceEEEEEcccccc
Q 002538 256 L--REKKFVLLLDDIWER 271 (911)
Q Consensus 256 L--~~k~~LlVlDdv~~~ 271 (911)
+ .+++.-||+|.++..
T Consensus 382 l~adsrP~CLViDEIDGa 399 (877)
T KOG1969|consen 382 LDADSRPVCLVIDEIDGA 399 (877)
T ss_pred cccCCCcceEEEecccCC
Confidence 2 157778999998754
No 272
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.63 E-value=0.073 Score=59.42 Aligned_cols=90 Identities=23% Similarity=0.218 Sum_probs=51.8
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCC-ccChHHHHHHHHHHcCCCCCcc-CCCCHHHHHHHHH
Q 002538 176 SAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSK-DLQIEKNQEIIGKKIGLFDDSW-KNKNLDERALEIF 253 (911)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~l~ 253 (911)
...+|.++|..|+||||.|..++... .. ..+ .++-|+... .....+.+..++.+++.+.... ...+.........
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L-~~-~g~-kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al 170 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYF-KK-KGL-KVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGL 170 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH-HH-cCC-eEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHH
Confidence 45799999999999999999999877 32 223 344444322 1123445666677766542111 1233333333333
Q ss_pred HHhhcceEEEEEcccc
Q 002538 254 KILREKKFVLLLDDIW 269 (911)
Q Consensus 254 ~~L~~k~~LlVlDdv~ 269 (911)
+.+.+. -+||+|..-
T Consensus 171 ~~~~~~-DvVIIDTAG 185 (437)
T PRK00771 171 EKFKKA-DVIIVDTAG 185 (437)
T ss_pred HHhhcC-CEEEEECCC
Confidence 344444 568888773
No 273
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=95.62 E-value=0.014 Score=65.77 Aligned_cols=44 Identities=30% Similarity=0.456 Sum_probs=39.3
Q ss_pred ccchHHHHHHHHHHhc------cCCceEEEEEcCCCChHHHHHHHHHhhh
Q 002538 158 VKGLESTLEDVWRCLV------EESAGIIGLYGMGGVGKTTLLTRINNKF 201 (911)
Q Consensus 158 ~~Gr~~~~~~l~~~L~------~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 201 (911)
++|.++.+++|++.|. ..+.+++.++|++|+||||||+.+.+-.
T Consensus 78 ~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~l 127 (644)
T PRK15455 78 FYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLM 127 (644)
T ss_pred ccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHH
Confidence 5699999999999993 3566899999999999999999999977
No 274
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.60 E-value=0.045 Score=53.34 Aligned_cols=23 Identities=39% Similarity=0.566 Sum_probs=21.2
Q ss_pred EEEEEcCCCChHHHHHHHHHhhh
Q 002538 179 IIGLYGMGGVGKTTLLTRINNKF 201 (911)
Q Consensus 179 vi~I~G~gGiGKTtLa~~v~~~~ 201 (911)
++.++|++|+||||++..++...
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~ 24 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYL 24 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68899999999999999998876
No 275
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.57 E-value=0.086 Score=52.45 Aligned_cols=82 Identities=17% Similarity=0.109 Sum_probs=45.9
Q ss_pred EEEEEcCCCChHHHHHHHHHhhhccCCCCCc---eEEEEEeCCccChHHHHHHHHHHc--CCCCCccCCCCHHHHHHHHH
Q 002538 179 IIGLYGMGGVGKTTLLTRINNKFLESPSDFD---CVIWVVVSKDLQIEKNQEIIGKKI--GLFDDSWKNKNLDERALEIF 253 (911)
Q Consensus 179 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~---~~~wv~~s~~~~~~~~~~~i~~~l--~~~~~~~~~~~~~~~~~~l~ 253 (911)
||+|.|.+|+||||+|+.+..... +.... ....+....-......... .... ...-......+.+.+.+.+.
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~--~~~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~~~p~a~d~~~l~~~l~ 77 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILN--KRGIPAMEMDIILSLDDFYDDYHLRDR-KGRGENRYNFDHPDAFDFDLLKEDLK 77 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT--TCTTTCCCSEEEEEGGGGBHHHHHHHH-HHHCTTTSSTTSGGGBSHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC--ccCcCccceeEEEeecccccccchhhH-hhccccccCCCCccccCHHHHHHHHH
Confidence 799999999999999999999872 22232 2333322222222222221 1111 11112234567777888887
Q ss_pred HHhhcceEEE
Q 002538 254 KILREKKFVL 263 (911)
Q Consensus 254 ~~L~~k~~Ll 263 (911)
...+++..-+
T Consensus 78 ~L~~g~~i~~ 87 (194)
T PF00485_consen 78 ALKNGGSIEI 87 (194)
T ss_dssp HHHTTSCEEE
T ss_pred HHhCCCcccc
Confidence 7766766443
No 276
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.54 E-value=0.023 Score=58.31 Aligned_cols=81 Identities=16% Similarity=0.192 Sum_probs=50.7
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhhccC--CCCCceEEEEEeCCccChHHHHHHHHHHcCCCCCccCCCCHHHHHHHHHH
Q 002538 177 AGIIGLYGMGGVGKTTLLTRINNKFLES--PSDFDCVIWVVVSKDLQIEKNQEIIGKKIGLFDDSWKNKNLDERALEIFK 254 (911)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 254 (911)
-++|-++|++|.|||+|.+++++.. .+ ...+....-+.++. ..++.+.... ..+....+.+++.+
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkL-SIR~~~~y~~~~liEins----hsLFSKWFsE--------SgKlV~kmF~kI~E 243 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKL-SIRTNDRYYKGQLIEINS----HSLFSKWFSE--------SGKLVAKMFQKIQE 243 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhh-eeeecCccccceEEEEeh----hHHHHHHHhh--------hhhHHHHHHHHHHH
Confidence 4789999999999999999999987 33 23344444443322 2222222211 23445566677777
Q ss_pred Hhhcce--EEEEEccccc
Q 002538 255 ILREKK--FVLLLDDIWE 270 (911)
Q Consensus 255 ~L~~k~--~LlVlDdv~~ 270 (911)
.+.++. +.+.+|.|.+
T Consensus 244 Lv~d~~~lVfvLIDEVES 261 (423)
T KOG0744|consen 244 LVEDRGNLVFVLIDEVES 261 (423)
T ss_pred HHhCCCcEEEEEeHHHHH
Confidence 776655 4566798864
No 277
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=95.52 E-value=0.0073 Score=58.31 Aligned_cols=84 Identities=13% Similarity=0.111 Sum_probs=44.9
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCccChHHHHHHHHHHcCCCCCccCC-CCHHHHHHHHHHHh
Q 002538 178 GIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDLQIEKNQEIIGKKIGLFDDSWKN-KNLDERALEIFKIL 256 (911)
Q Consensus 178 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~-~~~~~~~~~l~~~L 256 (911)
.++.|.|.+|+||||+|..+.... . . .++++.-...+ ..+..+.|..........+.. +....+...+....
T Consensus 2 ~~ili~G~~~sGKS~~a~~l~~~~-~--~---~~~~iat~~~~-~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~ 74 (170)
T PRK05800 2 MLILVTGGARSGKSRFAERLAAQS-G--L---QVLYIATAQPF-DDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRADA 74 (170)
T ss_pred CEEEEECCCCccHHHHHHHHHHHc-C--C---CcEeCcCCCCC-hHHHHHHHHHHHhcCCCCCeEecccccHHHHHHhhc
Confidence 368899999999999999998764 1 1 23344433333 334555554433222222211 11112333333333
Q ss_pred hcceEEEEEcccc
Q 002538 257 REKKFVLLLDDIW 269 (911)
Q Consensus 257 ~~k~~LlVlDdv~ 269 (911)
.+ .-++|+|.+-
T Consensus 75 ~~-~~~VlID~Lt 86 (170)
T PRK05800 75 AP-GRCVLVDCLT 86 (170)
T ss_pred CC-CCEEEehhHH
Confidence 32 3378899873
No 278
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.49 E-value=0.06 Score=59.89 Aligned_cols=92 Identities=20% Similarity=0.263 Sum_probs=51.2
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCC-ccChHHHHHHHHHHcCCCCCcc-CCCCHHHHHHHHH
Q 002538 176 SAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSK-DLQIEKNQEIIGKKIGLFDDSW-KNKNLDERALEIF 253 (911)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~l~ 253 (911)
...++.++|.+|+||||.|..++... ..+..+ .++-|+... .....+-++..+...+.+.-.. ...+..++.....
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l-~~~~g~-kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al 175 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYL-KKKQGK-KVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRAL 175 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHH-HHhCCC-eEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHH
Confidence 45799999999999999999888775 111222 344443322 1122333445555555442111 2234445554444
Q ss_pred HHhhcceE-EEEEcccc
Q 002538 254 KILREKKF-VLLLDDIW 269 (911)
Q Consensus 254 ~~L~~k~~-LlVlDdv~ 269 (911)
+....+.| +||+|-.-
T Consensus 176 ~~~~~~~~DvVIIDTaG 192 (428)
T TIGR00959 176 EYAKENGFDVVIVDTAG 192 (428)
T ss_pred HHHHhcCCCEEEEeCCC
Confidence 44544555 77777664
No 279
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=95.46 E-value=0.15 Score=53.05 Aligned_cols=167 Identities=16% Similarity=0.190 Sum_probs=98.1
Q ss_pred cccchHHHHHHHHHHhcc----CCceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCccChHH-HHHHHHH
Q 002538 157 IVKGLESTLEDVWRCLVE----ESAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDLQIEK-NQEIIGK 231 (911)
Q Consensus 157 ~~~Gr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~-~~~~i~~ 231 (911)
.++|-.++..++-.++.. ++..-|.|+|+.|.|||+|......+. +..-+..+-|........++ .++.|..
T Consensus 25 ~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~---q~~~E~~l~v~Lng~~~~dk~al~~I~r 101 (408)
T KOG2228|consen 25 NLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDI---QENGENFLLVRLNGELQTDKIALKGITR 101 (408)
T ss_pred ceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhH---HhcCCeEEEEEECccchhhHHHHHHHHH
Confidence 356888888888888764 456677799999999999998887774 22233444555555443322 4555665
Q ss_pred HcCCCCC--ccCCCCHHHHHHHHHHHhhc------ceEEEEEccccccc---------ccccccCCCCCCCCCCCcEEEE
Q 002538 232 KIGLFDD--SWKNKNLDERALEIFKILRE------KKFVLLLDDIWERV---------NLNKVGVPLPSPQSTTASKVVF 294 (911)
Q Consensus 232 ~l~~~~~--~~~~~~~~~~~~~l~~~L~~------k~~LlVlDdv~~~~---------~~~~~~~~l~~~~~~~gs~Iiv 294 (911)
|+..... .....+..+...++...|+. -+++.|+|+++-.. .+-++... ...+-+-|-+
T Consensus 102 ql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs----~r~Piciig~ 177 (408)
T KOG2228|consen 102 QLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQS----ARAPICIIGV 177 (408)
T ss_pred HHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhh----cCCCeEEEEe
Confidence 5533211 11234445556666666643 35888898886421 11122111 2344567778
Q ss_pred EcCchhh-------hhccCCcceEEccCCCHHHHHHHHHHHhC
Q 002538 295 TTRFINV-------CGSMEAHRNFKVECLTEKHAWELFQMKVG 330 (911)
Q Consensus 295 TtR~~~v-------~~~~~~~~~~~l~~L~~~es~~Lf~~~a~ 330 (911)
|||-.-. -...+-..++-+.+++-++-..++++...
T Consensus 178 Ttrld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll~ 220 (408)
T KOG2228|consen 178 TTRLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLLS 220 (408)
T ss_pred eccccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHhc
Confidence 9985432 12222223455667777777777777653
No 280
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=95.44 E-value=0.061 Score=58.00 Aligned_cols=93 Identities=14% Similarity=0.153 Sum_probs=57.0
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhhcc-C--CCCCceEEEEEeCCccChHHHHHHHHHHcCCCCCcc-------CCCCH
Q 002538 176 SAGIIGLYGMGGVGKTTLLTRINNKFLE-S--PSDFDCVIWVVVSKDLQIEKNQEIIGKKIGLFDDSW-------KNKNL 245 (911)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~--~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~-------~~~~~ 245 (911)
...+.-|+|.+|+|||+|+.+++-.... . ...-..++|++....|..+.+.+ +++.++...+.. ...+.
T Consensus 125 ~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~d~~~~l~~I~~~~~~~~ 203 (344)
T PLN03187 125 TRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGMDADAVLDNIIYARAYTY 203 (344)
T ss_pred CCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCCChhhhcCeEEEecCCCH
Confidence 4568889999999999999888643300 0 11235789999999999887655 566665542110 12233
Q ss_pred HHHHH---HHHHHhh-cceEEEEEcccc
Q 002538 246 DERAL---EIFKILR-EKKFVLLLDDIW 269 (911)
Q Consensus 246 ~~~~~---~l~~~L~-~k~~LlVlDdv~ 269 (911)
++... .+...+. .+--|||+|-+-
T Consensus 204 e~~~~~l~~l~~~i~~~~~~LvVIDSit 231 (344)
T PLN03187 204 EHQYNLLLGLAAKMAEEPFRLLIVDSVI 231 (344)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEeCcH
Confidence 33322 2323333 334488888874
No 281
>PRK10867 signal recognition particle protein; Provisional
Probab=95.39 E-value=0.063 Score=59.75 Aligned_cols=91 Identities=18% Similarity=0.243 Sum_probs=47.5
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCccCh--HHHHHHHHHHcCCCCCcc-CCCCHHHHHHHH
Q 002538 176 SAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDLQI--EKNQEIIGKKIGLFDDSW-KNKNLDERALEI 252 (911)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~--~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~l 252 (911)
...+|.++|.+|+||||.|..++... .... -..++.|+.. .+.. .+-++..++..+.+.-.. ...+...+....
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l-~~~~-G~kV~lV~~D-~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a 175 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYL-KKKK-KKKVLLVAAD-VYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAA 175 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHH-HHhc-CCcEEEEEcc-ccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHH
Confidence 46799999999999999998888766 2121 2233444332 2222 223444455554432110 123444444433
Q ss_pred HHHhhcceE-EEEEcccc
Q 002538 253 FKILREKKF-VLLLDDIW 269 (911)
Q Consensus 253 ~~~L~~k~~-LlVlDdv~ 269 (911)
.+..+.+.| ++|+|-.-
T Consensus 176 ~~~a~~~~~DvVIIDTaG 193 (433)
T PRK10867 176 LEEAKENGYDVVIVDTAG 193 (433)
T ss_pred HHHHHhcCCCEEEEeCCC
Confidence 343344444 66666553
No 282
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.37 E-value=0.063 Score=52.61 Aligned_cols=127 Identities=14% Similarity=0.191 Sum_probs=64.6
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCccChHHHHHHHHHHcCCCCCc------------c-CC
Q 002538 176 SAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDLQIEKNQEIIGKKIGLFDDS------------W-KN 242 (911)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~------------~-~~ 242 (911)
.-.+++|.|..|.|||||++.+.... .. -...+++... ++......+...++..... . .-
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~-~~---~~G~i~~~g~---~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~L 99 (178)
T cd03247 27 QGEKIALLGRSGSGKSTLLQLLTGDL-KP---QQGEITLDGV---PVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRF 99 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC-CC---CCCEEEECCE---EHHHHHHHHHhhEEEEccCCeeecccHHHhhcccC
Confidence 45789999999999999999998875 21 1223333211 1111111111111110000 0 01
Q ss_pred CCHHHHHHHHHHHhhcceEEEEEccccccccc---ccccCCCCCCCCCCCcEEEEEcCchhhhhccCCcceEEc
Q 002538 243 KNLDERALEIFKILREKKFVLLLDDIWERVNL---NKVGVPLPSPQSTTASKVVFTTRFINVCGSMEAHRNFKV 313 (911)
Q Consensus 243 ~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~~~---~~~~~~l~~~~~~~gs~IivTtR~~~v~~~~~~~~~~~l 313 (911)
..-+...-.+...+..++-++++|+....-+. +.+...+. ....+..||++|.+.+.... .++.+.+
T Consensus 100 S~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~--~~~~~~tii~~sh~~~~~~~--~d~~~~l 169 (178)
T cd03247 100 SGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIF--EVLKDKTLIWITHHLTGIEH--MDKILFL 169 (178)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHH--HHcCCCEEEEEecCHHHHHh--CCEEEEE
Confidence 11123333455666778889999998654221 11111111 11135678888887776642 3444444
No 283
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=95.34 E-value=0.028 Score=67.30 Aligned_cols=45 Identities=24% Similarity=0.404 Sum_probs=36.9
Q ss_pred cccchHHHHHHHHHHhcc-------C--CceEEEEEcCCCChHHHHHHHHHhhh
Q 002538 157 IVKGLESTLEDVWRCLVE-------E--SAGIIGLYGMGGVGKTTLLTRINNKF 201 (911)
Q Consensus 157 ~~~Gr~~~~~~l~~~L~~-------~--~~~vi~I~G~gGiGKTtLa~~v~~~~ 201 (911)
.|+|.++.++.|.+.+.. . ....+.++|+.|+|||++|+.++...
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l 512 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHh
Confidence 467999999998888762 1 23478899999999999999998876
No 284
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=95.34 E-value=0.048 Score=53.19 Aligned_cols=74 Identities=24% Similarity=0.368 Sum_probs=43.1
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCccChHHHHHHHHHHcCCCCCccCCCCHHHHHHHHHHH
Q 002538 176 SAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDLQIEKNQEIIGKKIGLFDDSWKNKNLDERALEIFKI 255 (911)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 255 (911)
+..-+.++|..|+|||.||.++.+... ... ..+.|++ ..+++..+...- .....+. +.+.
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~--~~g-~~v~f~~------~~~L~~~l~~~~-------~~~~~~~----~~~~ 105 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAI--RKG-YSVLFIT------ASDLLDELKQSR-------SDGSYEE----LLKR 105 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHH--HTT---EEEEE------HHHHHHHHHCCH-------CCTTHCH----HHHH
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhc--cCC-cceeEee------cCceeccccccc-------cccchhh----hcCc
Confidence 446799999999999999999999873 222 3456664 344555543221 1112222 2233
Q ss_pred hhcceEEEEEccccc
Q 002538 256 LREKKFVLLLDDIWE 270 (911)
Q Consensus 256 L~~k~~LlVlDdv~~ 270 (911)
+. +-=||||||+-.
T Consensus 106 l~-~~dlLilDDlG~ 119 (178)
T PF01695_consen 106 LK-RVDLLILDDLGY 119 (178)
T ss_dssp HH-TSSCEEEETCTS
T ss_pred cc-cccEecccccce
Confidence 33 335788999954
No 285
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.33 E-value=0.045 Score=50.24 Aligned_cols=118 Identities=18% Similarity=0.309 Sum_probs=61.9
Q ss_pred CCCcccceEEEeecCCcccCCC--CCCCCCccEEEcccCcccccChhhhccCCCCcEEEccCCCCcccC-ccccCcCCCC
Q 002538 513 VEGWEKVKRLLLMKNHIKHLPD--IPTCPHLLTLFLSHNQLRWISEDFFQFMPSLKVLNLSFTKRHKFP-SGISKLASLQ 589 (911)
Q Consensus 513 ~~~~~~l~~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~lp-~~i~~l~~L~ 589 (911)
+..+.+++.+.+.. .+..++. +..+++|+.+.+..+ +..++...|.+++.|+.+.+.. .+..++ ..+..+.+|+
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~ 84 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLK 84 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTEC
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccc
Confidence 34455777777763 4555543 678888999988775 7778888888888899999876 555553 3556688888
Q ss_pred EEeccCCCcCCcchh-hhccCcCcEEecCCCccccccChhhhccCccCc
Q 002538 590 LIDLSYTSIRGLPEE-LKALINLKCLNLDQTKFLVTIPRHLISSFSMLH 637 (911)
Q Consensus 590 ~L~L~~~~i~~lp~~-l~~L~~L~~L~L~~~~~l~~lp~~~i~~l~~L~ 637 (911)
.+++..+ +..++.. +.+. +|+.+.+..+ +..++...+.++++|+
T Consensus 85 ~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~~--~~~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 85 NIDIPSN-ITEIGSSSFSNC-NLKEINIPSN--ITKIEENAFKNCTKLK 129 (129)
T ss_dssp EEEETTT--BEEHTTTTTT--T--EEE-TTB---SS----GGG------
T ss_pred ccccCcc-ccEEchhhhcCC-CceEEEECCC--ccEECCccccccccCC
Confidence 8888664 6565443 5555 8888887763 5677777777777663
No 286
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=95.27 E-value=0.048 Score=51.91 Aligned_cols=123 Identities=19% Similarity=0.199 Sum_probs=71.0
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEE---------------------eCCcc-------------
Q 002538 175 ESAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVV---------------------VSKDL------------- 220 (911)
Q Consensus 175 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~---------------------~s~~~------------- 220 (911)
..-..+.++|.+|.||||+.+.+|... +. =...+|+. |-|++
T Consensus 26 ~~Gef~fl~GpSGAGKSTllkLi~~~e-~p---t~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA 101 (223)
T COG2884 26 PKGEFVFLTGPSGAGKSTLLKLIYGEE-RP---TRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVA 101 (223)
T ss_pred cCceEEEEECCCCCCHHHHHHHHHhhh-cC---CCceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhh
Confidence 355689999999999999999999885 21 12233331 11111
Q ss_pred --------ChHHHHHHHHH---HcCCCCC----ccCCCCHHHHHHHHHHHhhcceEEEEEcccc----ccccccc--ccC
Q 002538 221 --------QIEKNQEIIGK---KIGLFDD----SWKNKNLDERALEIFKILREKKFVLLLDDIW----ERVNLNK--VGV 279 (911)
Q Consensus 221 --------~~~~~~~~i~~---~l~~~~~----~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~----~~~~~~~--~~~ 279 (911)
...++.+...+ ..++... ...-..-++..-.+.+.+-+++-+|+-|+-- -...|+- +..
T Consensus 102 ~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfe 181 (223)
T COG2884 102 LPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFE 181 (223)
T ss_pred hhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHH
Confidence 12223233222 2222211 1122233444455777778899999999753 2223332 222
Q ss_pred CCCCCCCCCCcEEEEEcCchhhhhcc
Q 002538 280 PLPSPQSTTASKVVFTTRFINVCGSM 305 (911)
Q Consensus 280 ~l~~~~~~~gs~IivTtR~~~v~~~~ 305 (911)
. -+..|+.|+++|-+.++...+
T Consensus 182 e----inr~GtTVl~ATHd~~lv~~~ 203 (223)
T COG2884 182 E----INRLGTTVLMATHDLELVNRM 203 (223)
T ss_pred H----HhhcCcEEEEEeccHHHHHhc
Confidence 2 235799999999999987765
No 287
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.26 E-value=0.063 Score=58.39 Aligned_cols=89 Identities=25% Similarity=0.331 Sum_probs=51.0
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCC-ccChHHHHHHHHHHcCCCCCccCCCCHHHHHHHHHH
Q 002538 176 SAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSK-DLQIEKNQEIIGKKIGLFDDSWKNKNLDERALEIFK 254 (911)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 254 (911)
+..+++++|+.|+||||++.++.... ..+.....+..++... .....+-++..++.++.+... ..+..+....+ .
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~-~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~--~~~~~~l~~~l-~ 211 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARC-VMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHA--VKDGGDLQLAL-A 211 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH-HHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEe--cCCcccHHHHH-H
Confidence 45799999999999999999999876 1122223455555322 223445566666666654321 11222222222 2
Q ss_pred HhhcceEEEEEcccc
Q 002538 255 ILREKKFVLLLDDIW 269 (911)
Q Consensus 255 ~L~~k~~LlVlDdv~ 269 (911)
.+.++ -+|++|..-
T Consensus 212 ~l~~~-DlVLIDTaG 225 (374)
T PRK14722 212 ELRNK-HMVLIDTIG 225 (374)
T ss_pred HhcCC-CEEEEcCCC
Confidence 34444 456689874
No 288
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.24 E-value=0.021 Score=52.72 Aligned_cols=25 Identities=48% Similarity=0.555 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhh
Q 002538 177 AGIIGLYGMGGVGKTTLLTRINNKF 201 (911)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa~~v~~~~ 201 (911)
..-|+|.||+|+||||+++.+.+..
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHH
Confidence 3468999999999999999999887
No 289
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=95.24 E-value=0.15 Score=54.96 Aligned_cols=25 Identities=20% Similarity=0.252 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhh
Q 002538 177 AGIIGLYGMGGVGKTTLLTRINNKF 201 (911)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa~~v~~~~ 201 (911)
..-+.++|+.|+||||+|+.++...
T Consensus 21 ~hA~Lf~G~~G~GK~~la~~~a~~l 45 (325)
T PRK08699 21 PNAWLFAGKKGIGKTAFARFAAQAL 45 (325)
T ss_pred ceEEEeECCCCCCHHHHHHHHHHHH
Confidence 3467899999999999999998875
No 290
>PF12061 DUF3542: Protein of unknown function (DUF3542); InterPro: IPR021929 R1 is a gene for resistance to late blight, the most destructive disease in potato cultivation worldwide. The R1 gene belongs to the class of plant genes for pathogen resistance that have a leucine zipper motif, a putative nucleotide binding domain and a leucine-rich repeat domain []. Most proteins matching this entry are found associated with PF00931 from PFAM.
Probab=95.21 E-value=0.048 Score=55.51 Aligned_cols=76 Identities=17% Similarity=0.120 Sum_probs=65.0
Q ss_pred hhHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHh
Q 002538 11 CDAVLSRCLDCTIRKAAYASELEANLADLQTELQKLIEARNDVLRRVMVAEQRRVKRTDQVQGWLSRVEAVETTAGKLIG 90 (911)
Q Consensus 11 ~~~~~~~l~~~~~~e~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~ae~~~~~~~~~~~~Wl~~l~~~~~~~ed~ld 90 (911)
++-+++.|-.+..+....+.-++.+++-++.|++.+|.||+.+ +++...+++. .+....++-..||++|.++|
T Consensus 298 VdFlL~NLkdfq~rysdSlaflKnQiqvIQ~elesLqpFLk~V------~ee~~nkh~~-~ed~a~~ii~kAyevEYVVD 370 (402)
T PF12061_consen 298 VDFLLKNLKDFQGRYSDSLAFLKNQIQVIQTELESLQPFLKHV------VEEPHNKHDT-NEDCATQIIRKAYEVEYVVD 370 (402)
T ss_pred HHHHHhhHHHHhccccchHHHHHHHHHHHHHHHHHhhHHHHHH------Hhccchhhhh-hhhHHHHHHHHHhheeeeee
Confidence 5778888888888888889999999999999999999999986 5554444433 88999999999999999999
Q ss_pred cCC
Q 002538 91 DGP 93 (911)
Q Consensus 91 ~~~ 93 (911)
-+.
T Consensus 371 aCi 373 (402)
T PF12061_consen 371 ACI 373 (402)
T ss_pred hhh
Confidence 874
No 291
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.20 E-value=0.015 Score=53.46 Aligned_cols=22 Identities=36% Similarity=0.751 Sum_probs=20.2
Q ss_pred EEEEcCCCChHHHHHHHHHhhh
Q 002538 180 IGLYGMGGVGKTTLLTRINNKF 201 (911)
Q Consensus 180 i~I~G~gGiGKTtLa~~v~~~~ 201 (911)
|+|.|..|+||||+|+.+.+..
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999998873
No 292
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.20 E-value=0.058 Score=52.41 Aligned_cols=125 Identities=15% Similarity=0.145 Sum_probs=65.4
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhhccC--CC---CCc--eEEEEEeCCccChHHHHHHHHHHcCCCCC----ccCCCC
Q 002538 176 SAGIIGLYGMGGVGKTTLLTRINNKFLES--PS---DFD--CVIWVVVSKDLQIEKNQEIIGKKIGLFDD----SWKNKN 244 (911)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~---~f~--~~~wv~~s~~~~~~~~~~~i~~~l~~~~~----~~~~~~ 244 (911)
.-.+++|+|..|.|||||.+.+..+.-++ .. .|. .+.|+ .+ .+.++.+++... ....-+
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~--~q--------~~~l~~~~L~~~~~~~~~~~LS 89 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFI--DQ--------LQFLIDVGLGYLTLGQKLSTLS 89 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEE--hH--------HHHHHHcCCCccccCCCcCcCC
Confidence 45799999999999999999986432111 00 111 12332 22 345566654321 111112
Q ss_pred -HHHHHHHHHHHhhcc--eEEEEEcccccccc---cccccCCCCCCCCCCCcEEEEEcCchhhhhccCCcceEEc
Q 002538 245 -LDERALEIFKILREK--KFVLLLDDIWERVN---LNKVGVPLPSPQSTTASKVVFTTRFINVCGSMEAHRNFKV 313 (911)
Q Consensus 245 -~~~~~~~l~~~L~~k--~~LlVlDdv~~~~~---~~~~~~~l~~~~~~~gs~IivTtR~~~v~~~~~~~~~~~l 313 (911)
-+...-.+...+..+ .-++++|+.-..-+ .+.+...+.. ....|..||++|.+.+.... .++++.+
T Consensus 90 gGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~-~~~~g~tvIivSH~~~~~~~--~d~i~~l 161 (176)
T cd03238 90 GGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKG-LIDLGNTVILIEHNLDVLSS--ADWIIDF 161 (176)
T ss_pred HHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHH-HHhCCCEEEEEeCCHHHHHh--CCEEEEE
Confidence 223333455566667 77888998754322 1112111110 01136678888888776542 4445544
No 293
>PRK07667 uridine kinase; Provisional
Probab=95.19 E-value=0.026 Score=56.10 Aligned_cols=37 Identities=22% Similarity=0.452 Sum_probs=29.6
Q ss_pred HHHHHHHhcc--CCceEEEEEcCCCChHHHHHHHHHhhh
Q 002538 165 LEDVWRCLVE--ESAGIIGLYGMGGVGKTTLLTRINNKF 201 (911)
Q Consensus 165 ~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 201 (911)
.+.+.+.+.. +...+|+|.|.+|.||||+|+.+....
T Consensus 3 ~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l 41 (193)
T PRK07667 3 TNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENM 41 (193)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 3455666643 355799999999999999999999876
No 294
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.19 E-value=0.0025 Score=60.96 Aligned_cols=62 Identities=24% Similarity=0.528 Sum_probs=28.1
Q ss_pred ccccccceEeeccccccceeEecccCccccccccccCCccCEEEEecCCCCCC--CcccccCCCcceEeEec
Q 002538 721 ADLKHLKKLCISQCEELEELKIDCTGEVKRMCQPYIFRSLNKVQIYSCPVLKD--LTFLVFAPNLKSIDVRS 790 (911)
Q Consensus 721 ~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~--l~~l~~l~~L~~L~L~~ 790 (911)
..++.++.|.+.+|..+.+..++.++ +..++|+.|+|++|+++++ +.++..+++|+.|.|.+
T Consensus 122 ~~l~~i~~l~l~~ck~~dD~~L~~l~--------~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 122 RDLRSIKSLSLANCKYFDDWCLERLG--------GLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYD 185 (221)
T ss_pred hccchhhhheeccccchhhHHHHHhc--------ccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcC
Confidence 33444555555555444443333333 1244555555555554444 22344444444444444
No 295
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=95.18 E-value=0.081 Score=54.60 Aligned_cols=97 Identities=12% Similarity=0.140 Sum_probs=60.4
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHhhhcc-CCCCCceEEEEEeCCcc-ChHHHHHHHHHHcCCCC-----CccCCCCHH-
Q 002538 175 ESAGIIGLYGMGGVGKTTLLTRINNKFLE-SPSDFDCVIWVVVSKDL-QIEKNQEIIGKKIGLFD-----DSWKNKNLD- 246 (911)
Q Consensus 175 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~-----~~~~~~~~~- 246 (911)
.+-..++|.|-.|+|||+|+.++.+...- .+.+-+.++++-+++.. ...++.+.+.+.=.+.. ...++....
T Consensus 67 g~GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r 146 (276)
T cd01135 67 VRGQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIER 146 (276)
T ss_pred ccCCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHH
Confidence 35568899999999999999998887510 12335788888888765 45566666655322211 011111111
Q ss_pred ----HHHHHHHHHhh---cceEEEEEcccccc
Q 002538 247 ----ERALEIFKILR---EKKFVLLLDDIWER 271 (911)
Q Consensus 247 ----~~~~~l~~~L~---~k~~LlVlDdv~~~ 271 (911)
.....+.++++ ++++|+++||+-..
T Consensus 147 ~~a~~~a~aiAEyfrd~~g~~VLl~~D~ltr~ 178 (276)
T cd01135 147 IITPRMALTTAEYLAYEKGKHVLVILTDMTNY 178 (276)
T ss_pred HHHHHHHHHHHHHHHhccCCeEEEEEcChhHH
Confidence 12234556653 68999999999543
No 296
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.18 E-value=0.077 Score=51.27 Aligned_cols=125 Identities=12% Similarity=0.139 Sum_probs=65.6
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhhccCCCC--Cc---eEEEEEeCCccC--hHHHHHHHHHHcCCCCCccCCCCHHHH
Q 002538 176 SAGIIGLYGMGGVGKTTLLTRINNKFLESPSD--FD---CVIWVVVSKDLQ--IEKNQEIIGKKIGLFDDSWKNKNLDER 248 (911)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~--f~---~~~wv~~s~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~ 248 (911)
.-.+++|+|..|.|||||++.+........+. ++ .+.++ .+... ...+.+.+.-. .. ..-..-+..
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~--~q~~~~~~~tv~~nl~~~---~~--~~LS~G~~~ 98 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFL--PQRPYLPLGTLREQLIYP---WD--DVLSGGEQQ 98 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEE--CCCCccccccHHHHhhcc---CC--CCCCHHHHH
Confidence 45689999999999999999998875111111 11 12222 23221 11333333211 11 012223344
Q ss_pred HHHHHHHhhcceEEEEEcccccccc---cccccCCCCCCCCCCCcEEEEEcCchhhhhccCCcceEEc
Q 002538 249 ALEIFKILREKKFVLLLDDIWERVN---LNKVGVPLPSPQSTTASKVVFTTRFINVCGSMEAHRNFKV 313 (911)
Q Consensus 249 ~~~l~~~L~~k~~LlVlDdv~~~~~---~~~~~~~l~~~~~~~gs~IivTtR~~~v~~~~~~~~~~~l 313 (911)
.-.+...+..++=++++|+.-..-+ ...+...+. .. +..||++|.+..... ..++++.+
T Consensus 99 rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~--~~--~~tiiivsh~~~~~~--~~d~i~~l 160 (166)
T cd03223 99 RLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLK--EL--GITVISVGHRPSLWK--FHDRVLDL 160 (166)
T ss_pred HHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHH--Hh--CCEEEEEeCChhHHh--hCCEEEEE
Confidence 4456666777888899998754322 222222222 11 355888887766543 23444444
No 297
>PRK14974 cell division protein FtsY; Provisional
Probab=95.18 E-value=0.16 Score=54.59 Aligned_cols=91 Identities=18% Similarity=0.160 Sum_probs=49.4
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCcc--ChHHHHHHHHHHcCCCCCc-cCCCCHHHHH-HH
Q 002538 176 SAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDL--QIEKNQEIIGKKIGLFDDS-WKNKNLDERA-LE 251 (911)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~--~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~-~~ 251 (911)
+..+|.++|+.|+||||++..++... . ...+ .++.+.. ..+ .....++..+..++.+... ....+...+. ..
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l-~-~~g~-~V~li~~-Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~a 214 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYL-K-KNGF-SVVIAAG-DTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDA 214 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH-H-HcCC-eEEEecC-CcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHH
Confidence 46799999999999999998888776 2 2333 3334432 222 2223455566666653211 1222333332 22
Q ss_pred HHHHhhcceEEEEEccccc
Q 002538 252 IFKILREKKFVLLLDDIWE 270 (911)
Q Consensus 252 l~~~L~~k~~LlVlDdv~~ 270 (911)
+...-....=+|++|-...
T Consensus 215 i~~~~~~~~DvVLIDTaGr 233 (336)
T PRK14974 215 IEHAKARGIDVVLIDTAGR 233 (336)
T ss_pred HHHHHhCCCCEEEEECCCc
Confidence 2222222223888898743
No 298
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=95.17 E-value=0.021 Score=56.93 Aligned_cols=109 Identities=14% Similarity=0.139 Sum_probs=58.1
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCccChH-HHHHHHHHHcCCCCCccCCCCHHHHHHHHHHHh
Q 002538 178 GIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDLQIE-KNQEIIGKKIGLFDDSWKNKNLDERALEIFKIL 256 (911)
Q Consensus 178 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~-~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L 256 (911)
.+|.|+|..|.||||+++.+.... .......++.-- ...... .-...+..+-.. ..+.......+...+
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~---~~~~~~~i~t~e-~~~E~~~~~~~~~i~q~~v------g~~~~~~~~~i~~aL 71 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYI---NKNKTHHILTIE-DPIEFVHESKRSLINQREV------GLDTLSFENALKAAL 71 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh---hhcCCcEEEEEc-CCccccccCccceeeeccc------CCCccCHHHHHHHHh
Confidence 478999999999999999887776 223333333321 111100 000001111000 111223455667777
Q ss_pred hcceEEEEEcccccccccccccCCCCCCCCCCCcEEEEEcCchhh
Q 002538 257 REKKFVLLLDDIWERVNLNKVGVPLPSPQSTTASKVVFTTRFINV 301 (911)
Q Consensus 257 ~~k~~LlVlDdv~~~~~~~~~~~~l~~~~~~~gs~IivTtR~~~v 301 (911)
....=++++|++.+.+........ ...|..|+.|+-..++
T Consensus 72 r~~pd~ii~gEird~e~~~~~l~~-----a~~G~~v~~t~Ha~~~ 111 (198)
T cd01131 72 RQDPDVILVGEMRDLETIRLALTA-----AETGHLVMSTLHTNSA 111 (198)
T ss_pred cCCcCEEEEcCCCCHHHHHHHHHH-----HHcCCEEEEEecCCcH
Confidence 777789999999766554432221 1235557777654443
No 299
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=95.17 E-value=0.13 Score=53.09 Aligned_cols=49 Identities=14% Similarity=0.087 Sum_probs=35.8
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCccChHHHHHHH
Q 002538 176 SAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDLQIEKNQEII 229 (911)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 229 (911)
...++.|.|.+|+|||++|.++.... -..-..++|++... +..++.+.+
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~---~~~ge~~lyvs~ee--~~~~i~~~~ 68 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNG---LQMGEPGIYVALEE--HPVQVRRNM 68 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH---HHcCCcEEEEEeeC--CHHHHHHHH
Confidence 56799999999999999999876654 13356788888655 444555543
No 300
>PTZ00301 uridine kinase; Provisional
Probab=95.15 E-value=0.038 Score=55.35 Aligned_cols=25 Identities=36% Similarity=0.658 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhh
Q 002538 177 AGIIGLYGMGGVGKTTLLTRINNKF 201 (911)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa~~v~~~~ 201 (911)
..+|+|.|.+|.||||+|+.+.+..
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l 27 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSEL 27 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHH
Confidence 4689999999999999999998775
No 301
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=95.12 E-value=0.022 Score=60.62 Aligned_cols=26 Identities=27% Similarity=0.406 Sum_probs=24.1
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhh
Q 002538 176 SAGIIGLYGMGGVGKTTLLTRINNKF 201 (911)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 201 (911)
-...++|||++|.|||.+|++++++.
T Consensus 147 ~PlgllL~GPPGcGKTllAraiA~el 172 (413)
T PLN00020 147 VPLILGIWGGKGQGKSFQCELVFKKM 172 (413)
T ss_pred CCeEEEeeCCCCCCHHHHHHHHHHHc
Confidence 45689999999999999999999997
No 302
>PRK12678 transcription termination factor Rho; Provisional
Probab=95.11 E-value=0.027 Score=63.14 Aligned_cols=100 Identities=23% Similarity=0.242 Sum_probs=55.0
Q ss_pred HHHHHhcc-CCceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEE-EEEeCCcc-ChHHHHHHHHHHcCCCCCccCCC
Q 002538 167 DVWRCLVE-ESAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVI-WVVVSKDL-QIEKNQEIIGKKIGLFDDSWKNK 243 (911)
Q Consensus 167 ~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~-wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~ 243 (911)
++++++.- .+-.-..|+|.+|+|||||++.+++... ..+-++.+ .+-|.+.. .+.++.+.+-..+-... ++..
T Consensus 405 RvIDll~PIGkGQR~LIvgpp~aGKTtLL~~IAn~i~--~n~~~~~~ivvLIgERpeEVtdm~rsVkgeVVasT--~D~p 480 (672)
T PRK12678 405 RVIDLIMPIGKGQRGLIVSPPKAGKTTILQNIANAIT--TNNPECHLMVVLVDERPEEVTDMQRSVKGEVIAST--FDRP 480 (672)
T ss_pred eeeeeecccccCCEeEEeCCCCCCHHHHHHHHHHHHh--hcCCCeEEEEEEEeCchhhHHHHHHhccceEEEEC--CCCC
Confidence 34444443 4556788999999999999999999762 22334433 33444433 23333333311111111 1111
Q ss_pred C-----HHHHHHHHHHHh--hcceEEEEEccccc
Q 002538 244 N-----LDERALEIFKIL--REKKFVLLLDDIWE 270 (911)
Q Consensus 244 ~-----~~~~~~~l~~~L--~~k~~LlVlDdv~~ 270 (911)
. ...+.-.+.+++ +++.+||++|++-.
T Consensus 481 ~~~~~~~a~~ai~~Ae~fre~G~dVlillDSlTR 514 (672)
T PRK12678 481 PSDHTTVAELAIERAKRLVELGKDVVVLLDSITR 514 (672)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCchH
Confidence 1 122233345555 68999999999853
No 303
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.10 E-value=0.069 Score=58.50 Aligned_cols=86 Identities=21% Similarity=0.327 Sum_probs=51.7
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCccChHHHHHHHHHHcCCCCCcc---CCCCHHHHHHHH
Q 002538 176 SAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDLQIEKNQEIIGKKIGLFDDSW---KNKNLDERALEI 252 (911)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 252 (911)
.-.++.|.|.+|+|||||+.+++.... ..-..++|++.... ..++. .-+..++...+.. ...+.+.+...+
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~~a---~~g~~VlYvs~EEs--~~qi~-~Ra~rlg~~~~~l~l~~e~~le~I~~~i 154 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAARLA---KRGGKVLYVSGEES--PEQIK-LRADRLGISTENLYLLAETNLEDILASI 154 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHH---hcCCeEEEEECCcC--HHHHH-HHHHHcCCCcccEEEEccCcHHHHHHHH
Confidence 456999999999999999999988762 23356888876543 33332 2234555432211 123333333333
Q ss_pred HHHhhcceEEEEEccccc
Q 002538 253 FKILREKKFVLLLDDIWE 270 (911)
Q Consensus 253 ~~~L~~k~~LlVlDdv~~ 270 (911)
. +.+.-+||+|.+..
T Consensus 155 ~---~~~~~lVVIDSIq~ 169 (372)
T cd01121 155 E---ELKPDLVIIDSIQT 169 (372)
T ss_pred H---hcCCcEEEEcchHH
Confidence 2 23666899998843
No 304
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=95.09 E-value=0.052 Score=53.30 Aligned_cols=124 Identities=18% Similarity=0.205 Sum_probs=66.0
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCC--ccChHHHH------HHHHHHcCCCCC---ccC-CC
Q 002538 176 SAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSK--DLQIEKNQ------EIIGKKIGLFDD---SWK-NK 243 (911)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~--~~~~~~~~------~~i~~~l~~~~~---~~~-~~ 243 (911)
.-.+++|+|..|.|||||++.++... ......+++.... ..+..... -++++.+++... ... -.
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~----~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS 99 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLL----KPSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELS 99 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC----CCCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCC
Confidence 55799999999999999999998865 2233344432111 11221211 114555554321 011 11
Q ss_pred CHHHHHHHHHHHhhcceEEEEEcccccccc---cccccCCCCCCCCCCCcEEEEEcCchhhhh
Q 002538 244 NLDERALEIFKILREKKFVLLLDDIWERVN---LNKVGVPLPSPQSTTASKVVFTTRFINVCG 303 (911)
Q Consensus 244 ~~~~~~~~l~~~L~~k~~LlVlDdv~~~~~---~~~~~~~l~~~~~~~gs~IivTtR~~~v~~ 303 (911)
.-+...-.+...+...+-++++|+.-..-+ .+.+...+.......|..||++|.+.+...
T Consensus 100 ~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~ 162 (180)
T cd03214 100 GGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAA 162 (180)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 223334456667778889999999854322 122212111001111567888887766543
No 305
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.09 E-value=0.018 Score=46.21 Aligned_cols=23 Identities=30% Similarity=0.618 Sum_probs=20.8
Q ss_pred EEEEEcCCCChHHHHHHHHHhhh
Q 002538 179 IIGLYGMGGVGKTTLLTRINNKF 201 (911)
Q Consensus 179 vi~I~G~gGiGKTtLa~~v~~~~ 201 (911)
+|+|.|..|+||||+|+.+.+..
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998874
No 306
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.09 E-value=0.097 Score=53.89 Aligned_cols=88 Identities=13% Similarity=0.173 Sum_probs=55.7
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCccChHHHHHHHHHHcCCCCCc----------------
Q 002538 176 SAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDLQIEKNQEIIGKKIGLFDDS---------------- 239 (911)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~---------------- 239 (911)
.-.++.|.|.+|+|||++|.++.... ...-..++|++..+. ...+.+.+ ++++..-.+
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~---~~~g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~ 97 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGA---LKQGKKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTEG 97 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHH---HhCCCEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCCCceEEeccccc
Confidence 46799999999999999999986654 123467889988654 34454443 333321110
Q ss_pred --cCCCCHHHHHHHHHHHhhc-ceEEEEEcccc
Q 002538 240 --WKNKNLDERALEIFKILRE-KKFVLLLDDIW 269 (911)
Q Consensus 240 --~~~~~~~~~~~~l~~~L~~-k~~LlVlDdv~ 269 (911)
....+.+.....+.+.+.. +.-++|+|.+-
T Consensus 98 ~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 98 FEWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred cccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 0112335566666666654 55589999875
No 307
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.06 E-value=0.054 Score=59.38 Aligned_cols=45 Identities=29% Similarity=0.369 Sum_probs=36.4
Q ss_pred cccchHH---HHHHHHHHhccC--------C-ceEEEEEcCCCChHHHHHHHHHhhh
Q 002538 157 IVKGLES---TLEDVWRCLVEE--------S-AGIIGLYGMGGVGKTTLLTRINNKF 201 (911)
Q Consensus 157 ~~~Gr~~---~~~~l~~~L~~~--------~-~~vi~I~G~gGiGKTtLa~~v~~~~ 201 (911)
.|.|-|+ ++++|+++|.+. + .+-|.++|++|.|||-||++++.+.
T Consensus 305 dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA 361 (752)
T KOG0734|consen 305 DVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEA 361 (752)
T ss_pred cccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhccc
Confidence 3567765 677889999863 2 4578899999999999999999987
No 308
>PRK08233 hypothetical protein; Provisional
Probab=95.05 E-value=0.019 Score=56.50 Aligned_cols=25 Identities=40% Similarity=0.595 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhh
Q 002538 177 AGIIGLYGMGGVGKTTLLTRINNKF 201 (911)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa~~v~~~~ 201 (911)
..+|+|.|.+|+||||+|+.++...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l 27 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKL 27 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhC
Confidence 4789999999999999999998876
No 309
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=95.03 E-value=0.071 Score=57.20 Aligned_cols=59 Identities=17% Similarity=0.219 Sum_probs=41.0
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhhcc---CCCCCceEEEEEeCCccChHHHHHHHHHHcCC
Q 002538 176 SAGIIGLYGMGGVGKTTLLTRINNKFLE---SPSDFDCVIWVVVSKDLQIEKNQEIIGKKIGL 235 (911)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~---~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 235 (911)
...++.|+|.+|+|||||+..++..... ....-..++|++....+....+ .++++.++.
T Consensus 95 ~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~~~ 156 (316)
T TIGR02239 95 TGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERYGL 156 (316)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHcCC
Confidence 4679999999999999999988754310 0112246899998887777763 445555544
No 310
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=95.02 E-value=0.019 Score=55.82 Aligned_cols=25 Identities=36% Similarity=0.506 Sum_probs=23.4
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhh
Q 002538 177 AGIIGLYGMGGVGKTTLLTRINNKF 201 (911)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa~~v~~~~ 201 (911)
..+|+|-||-|+||||||+++.++.
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l 28 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHL 28 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHh
Confidence 4689999999999999999999997
No 311
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.00 E-value=0.12 Score=54.16 Aligned_cols=90 Identities=21% Similarity=0.219 Sum_probs=49.5
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCccCh--HHHHHHHHHHcCCCCC-ccCCCCHHH-HHHH
Q 002538 176 SAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDLQI--EKNQEIIGKKIGLFDD-SWKNKNLDE-RALE 251 (911)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~--~~~~~~i~~~l~~~~~-~~~~~~~~~-~~~~ 251 (911)
+.++|.++|.+|+||||.+..++... . ..-..+..++... +.. .+-+...++..+.+.- .....+... ....
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l-~--~~g~~V~li~~D~-~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~ 146 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKL-K--KQGKSVLLAAGDT-FRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDA 146 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH-H--hcCCEEEEEeCCC-CCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHH
Confidence 46799999999999999999998876 2 2223566665432 222 2233344455443210 001223322 2233
Q ss_pred HHHHhhcceEEEEEcccc
Q 002538 252 IFKILREKKFVLLLDDIW 269 (911)
Q Consensus 252 l~~~L~~k~~LlVlDdv~ 269 (911)
+.....+..-++++|-.-
T Consensus 147 l~~~~~~~~D~ViIDT~G 164 (272)
T TIGR00064 147 IQKAKARNIDVVLIDTAG 164 (272)
T ss_pred HHHHHHCCCCEEEEeCCC
Confidence 444334444578888764
No 312
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=94.98 E-value=0.032 Score=57.24 Aligned_cols=27 Identities=30% Similarity=0.495 Sum_probs=24.6
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHhhh
Q 002538 175 ESAGIIGLYGMGGVGKTTLLTRINNKF 201 (911)
Q Consensus 175 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 201 (911)
.+..+|+|.|..|.|||||++.+....
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l 57 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALL 57 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 467799999999999999999999876
No 313
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=94.94 E-value=0.12 Score=55.85 Aligned_cols=57 Identities=18% Similarity=0.349 Sum_probs=41.5
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhhccCCC----CCceEEEEEeCCccChHHHHHHHHHHcC
Q 002538 176 SAGIIGLYGMGGVGKTTLLTRINNKFLESPS----DFDCVIWVVVSKDLQIEKNQEIIGKKIG 234 (911)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 234 (911)
...++-|+|.+|+|||++|.+++-.. .... .-..++|++....++...+.+ +++.++
T Consensus 101 ~g~vtei~G~~GsGKT~l~~~~~~~~-~~~~~~gg~~~~~~yi~te~~f~~~rl~~-~~~~~g 161 (317)
T PRK04301 101 TQSITEFYGEFGSGKTQICHQLAVNV-QLPEEKGGLEGKAVYIDTEGTFRPERIEQ-MAEALG 161 (317)
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHh-ccccccCCCCceEEEEeCCCCcCHHHHHH-HHHHcC
Confidence 46789999999999999999987664 1111 114799999988888776654 344444
No 314
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=94.94 E-value=0.096 Score=54.63 Aligned_cols=36 Identities=28% Similarity=0.293 Sum_probs=30.0
Q ss_pred HHHHHHhccCCceEEEEEcCCCChHHHHHHHHHhhh
Q 002538 166 EDVWRCLVEESAGIIGLYGMGGVGKTTLLTRINNKF 201 (911)
Q Consensus 166 ~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 201 (911)
++..+++.+.+..+|.|.|.+|.|||||+..+.+..
T Consensus 93 ~~~r~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l 128 (290)
T PRK10463 93 ERNRARFAARKQLVLNLVSSPGSGKTTLLTETLMRL 128 (290)
T ss_pred HHHHHHHHhcCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 334555556689999999999999999999999886
No 315
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=94.94 E-value=0.088 Score=55.88 Aligned_cols=88 Identities=16% Similarity=0.189 Sum_probs=54.8
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCccChHHHHHHHHHHcCCCCCcc---CCCCHHHHHHHH
Q 002538 176 SAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDLQIEKNQEIIGKKIGLFDDSW---KNKNLDERALEI 252 (911)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 252 (911)
..+++-|+|..|+||||||..+.... ++.-..++|+.....++.. .++.++...+.. .....++....+
T Consensus 52 ~G~ivEi~G~~ssGKttLaL~~ia~~---q~~g~~~a~ID~e~~ld~~-----~a~~lGvdl~rllv~~P~~~E~al~~~ 123 (322)
T PF00154_consen 52 RGRIVEIYGPESSGKTTLALHAIAEA---QKQGGICAFIDAEHALDPE-----YAESLGVDLDRLLVVQPDTGEQALWIA 123 (322)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH---HHTT-EEEEEESSS---HH-----HHHHTT--GGGEEEEE-SSHHHHHHHH
T ss_pred cCceEEEeCCCCCchhhhHHHHHHhh---hcccceeEEecCcccchhh-----HHHhcCccccceEEecCCcHHHHHHHH
Confidence 45699999999999999999988876 3345678999988877664 344555443321 233445555666
Q ss_pred HHHhhc-ceEEEEEcccccc
Q 002538 253 FKILRE-KKFVLLLDDIWER 271 (911)
Q Consensus 253 ~~~L~~-k~~LlVlDdv~~~ 271 (911)
.+.++. .--++|+|-|-..
T Consensus 124 e~lirsg~~~lVVvDSv~al 143 (322)
T PF00154_consen 124 EQLIRSGAVDLVVVDSVAAL 143 (322)
T ss_dssp HHHHHTTSESEEEEE-CTT-
T ss_pred HHHhhcccccEEEEecCccc
Confidence 666654 3458899988654
No 316
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.94 E-value=0.031 Score=58.52 Aligned_cols=58 Identities=21% Similarity=0.300 Sum_probs=36.2
Q ss_pred HHHHHHhccCCceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCccChHHHHH
Q 002538 166 EDVWRCLVEESAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDLQIEKNQE 227 (911)
Q Consensus 166 ~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 227 (911)
..+++.+...+.+| .++|..|+|||++++...... . ...| .+.-++.|...+...+++
T Consensus 23 ~~ll~~l~~~~~pv-Ll~G~~GtGKT~li~~~l~~l-~-~~~~-~~~~~~~s~~Tts~~~q~ 80 (272)
T PF12775_consen 23 SYLLDLLLSNGRPV-LLVGPSGTGKTSLIQNFLSSL-D-SDKY-LVITINFSAQTTSNQLQK 80 (272)
T ss_dssp HHHHHHHHHCTEEE-EEESSTTSSHHHHHHHHHHCS-T-TCCE-EEEEEES-TTHHHHHHHH
T ss_pred HHHHHHHHHcCCcE-EEECCCCCchhHHHHhhhccC-C-cccc-ceeEeeccCCCCHHHHHH
Confidence 45666666665544 699999999999999988765 1 2222 234455555444444443
No 317
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=94.93 E-value=0.12 Score=51.62 Aligned_cols=130 Identities=15% Similarity=0.190 Sum_probs=73.2
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEE----------------------eCCcc------C-----
Q 002538 175 ESAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVV----------------------VSKDL------Q----- 221 (911)
Q Consensus 175 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~----------------------~s~~~------~----- 221 (911)
.+-.+++|+|++|+|||||...+..-. +. -...+++. +.|.+ +
T Consensus 29 ~~Ge~vaI~GpSGSGKSTLLniig~ld-~p---t~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv 104 (226)
T COG1136 29 EAGEFVAIVGPSGSGKSTLLNLLGGLD-KP---TSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENV 104 (226)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccc-CC---CCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCCCCHHHHH
Confidence 355699999999999999999987543 11 11122211 11211 1
Q ss_pred -------------hHHHHHHHHHHcCCCCCc-----cCCCCHHHHHHHHHHHhhcceEEEEEcccccc------cccccc
Q 002538 222 -------------IEKNQEIIGKKIGLFDDS-----WKNKNLDERALEIFKILREKKFVLLLDDIWER------VNLNKV 277 (911)
Q Consensus 222 -------------~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~------~~~~~~ 277 (911)
.......+++.+++.... ..-..-++..-.+.+.|...+-+|+-|+--.. ....++
T Consensus 105 ~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~l 184 (226)
T COG1136 105 ELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLEL 184 (226)
T ss_pred HhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHH
Confidence 122334445555553211 11222344455677888889999999976321 122222
Q ss_pred cCCCCCCCCCCCcEEEEEcCchhhhhccCCcceEEc
Q 002538 278 GVPLPSPQSTTASKVVFTTRFINVCGSMEAHRNFKV 313 (911)
Q Consensus 278 ~~~l~~~~~~~gs~IivTtR~~~v~~~~~~~~~~~l 313 (911)
...+ ....|..||+.|-++.++..+ ++++.+
T Consensus 185 l~~~---~~~~g~tii~VTHd~~lA~~~--dr~i~l 215 (226)
T COG1136 185 LREL---NKERGKTIIMVTHDPELAKYA--DRVIEL 215 (226)
T ss_pred HHHH---HHhcCCEEEEEcCCHHHHHhC--CEEEEE
Confidence 2221 234577899999999998853 344444
No 318
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=94.92 E-value=0.16 Score=53.43 Aligned_cols=80 Identities=14% Similarity=0.054 Sum_probs=42.8
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCccChHHHHHHHHHHcCCC--CCccCCCCHHHHHHHH
Q 002538 175 ESAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDLQIEKNQEIIGKKIGLF--DDSWKNKNLDERALEI 252 (911)
Q Consensus 175 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~--~~~~~~~~~~~~~~~l 252 (911)
....+|+|.|..|+||||+|+.+..-. .....-..+..++...-......... .+.. .+....-+.+.....+
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll-~~~~~~g~V~vi~~D~f~~~~~~l~~----~g~~~~~g~P~s~D~~~l~~~L 134 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALL-SRWPEHRKVELITTDGFLHPNQVLKE----RNLMKKKGFPESYDMHRLVKFL 134 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH-hhcCCCCceEEEecccccccHHHHHH----cCCccccCCChhccHHHHHHHH
Confidence 356799999999999999998876654 11011112444443332222222222 2211 1112345666666666
Q ss_pred HHHhhcc
Q 002538 253 FKILREK 259 (911)
Q Consensus 253 ~~~L~~k 259 (911)
...-.++
T Consensus 135 ~~Lk~g~ 141 (290)
T TIGR00554 135 SDLKSGK 141 (290)
T ss_pred HHHHCCC
Confidence 6665554
No 319
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=94.88 E-value=0.057 Score=49.95 Aligned_cols=45 Identities=18% Similarity=0.308 Sum_probs=34.8
Q ss_pred EEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCccChHHHHHHHHHHcCCCC
Q 002538 179 IIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDLQIEKNQEIIGKKIGLFD 237 (911)
Q Consensus 179 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~ 237 (911)
+|.|-|.+|.||||+|+.++++. . -.| .+.-.++++|++..+++-
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~-g--l~~-----------vsaG~iFR~~A~e~gmsl 46 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHL-G--LKL-----------VSAGTIFREMARERGMSL 46 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHh-C--Cce-----------eeccHHHHHHHHHcCCCH
Confidence 68899999999999999999987 1 111 134468899998887753
No 320
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=94.84 E-value=0.13 Score=58.95 Aligned_cols=259 Identities=19% Similarity=0.147 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHh
Q 002538 11 CDAVLSRCLDCTIRKAAYASELEANLADLQTELQKLIEARNDVLRRVMVAEQRRVKRTDQVQGWLSRVEAVETTAGKLIG 90 (911)
Q Consensus 11 ~~~~~~~l~~~~~~e~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~ae~~~~~~~~~~~~Wl~~l~~~~~~~ed~ld 90 (911)
++.|..+++..=..++..-.|-......-+.+....+.. +.+++.+.-...+.|+++-...+.-+
T Consensus 213 Ld~V~t~I~~ld~g~l~~y~Gny~~~~~~r~~~~~~~~~----------~~~~~~~~~~~~~~~i~r~~~~~~~~----- 277 (530)
T COG0488 213 LDNVATHILELDRGKLTPYKGNYSSYLEQKAERLRQEAA----------AYEKQQKELAKEQEWIRRGKAAASKA----- 277 (530)
T ss_pred HHHHhhheEEecCCceeEecCCHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHhccchH-----
Q ss_pred cCCcccccccccCccCCCcchhchhHHHHHHHHHHHHHHhccCCc--chhhccCCCCCCccccCCccccccchHHHHHHH
Q 002538 91 DGPQETEKLCLGGCCSKDFNSSYKFGKQVVKALRDVKTLEGERFF--EVVAEIAPDQSSVADERPTEAIVKGLESTLEDV 168 (911)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Gr~~~~~~l 168 (911)
+...+|.+...++.+.............+ .+.....+.......- +...+|.+.. ..|
T Consensus 278 ----------------k~a~sr~k~l~k~~~~~~~~~~~~~~~~~~~~f~~~~~~~g~~vl~~---~~~~~~y~~~-~~l 337 (530)
T COG0488 278 ----------------KKAKSRIKRLEKLEARLAEERPVEEGKPLAFRFPPPGKRLGKLVLEF---ENVSKGYDGG-RLL 337 (530)
T ss_pred ----------------HHHHHHHHHHHHHHhhhhhcccccccccceeeccCCcccCCCeeEEE---eccccccCCC-cee
Q ss_pred HHHhcc--CCceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEE-------------------------EEeCCccC
Q 002538 169 WRCLVE--ESAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIW-------------------------VVVSKDLQ 221 (911)
Q Consensus 169 ~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~w-------------------------v~~s~~~~ 221 (911)
.+-+.- ..-..|+|+|..|+|||||.+.+.... ...-..+.| +.-.....
T Consensus 338 ~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~---~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~ 414 (530)
T COG0488 338 LKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGEL---GPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDG 414 (530)
T ss_pred ecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhc---ccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccc
Q ss_pred hHHHHHHHHHHcCCCCCcc-----CCCCHHHHHHHHHHHhhcceEEEEEc------ccccccccccccCCCCCCCCCCCc
Q 002538 222 IEKNQEIIGKKIGLFDDSW-----KNKNLDERALEIFKILREKKFVLLLD------DIWERVNLNKVGVPLPSPQSTTAS 290 (911)
Q Consensus 222 ~~~~~~~i~~~l~~~~~~~-----~~~~~~~~~~~l~~~L~~k~~LlVlD------dv~~~~~~~~~~~~l~~~~~~~gs 290 (911)
...-.+..+..++.+.+.. .-..-+...-.+...+-.+.=+|||| |+...+.+++....++ |+
T Consensus 415 ~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f~------Gt 488 (530)
T COG0488 415 DEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDFE------GT 488 (530)
T ss_pred cHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhCC------Ce
Q ss_pred EEEEEcCchhhhhccCCcceEEccC
Q 002538 291 KVVFTTRFINVCGSMEAHRNFKVEC 315 (911)
Q Consensus 291 ~IivTtR~~~v~~~~~~~~~~~l~~ 315 (911)
||+.|-++....... .+++.+.+
T Consensus 489 -vl~VSHDr~Fl~~va-~~i~~~~~ 511 (530)
T COG0488 489 -VLLVSHDRYFLDRVA-TRIWLVED 511 (530)
T ss_pred -EEEEeCCHHHHHhhc-ceEEEEcC
No 321
>PRK05480 uridine/cytidine kinase; Provisional
Probab=94.81 E-value=0.025 Score=57.17 Aligned_cols=27 Identities=37% Similarity=0.554 Sum_probs=24.1
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHhhh
Q 002538 175 ESAGIIGLYGMGGVGKTTLLTRINNKF 201 (911)
Q Consensus 175 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 201 (911)
.+..+|+|.|.+|+||||||+.++...
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 356799999999999999999999875
No 322
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.80 E-value=0.095 Score=57.43 Aligned_cols=25 Identities=28% Similarity=0.510 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhh
Q 002538 177 AGIIGLYGMGGVGKTTLLTRINNKF 201 (911)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa~~v~~~~ 201 (911)
..++.++|.+|+||||++..++...
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998754
No 323
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=94.80 E-value=0.075 Score=58.91 Aligned_cols=91 Identities=20% Similarity=0.175 Sum_probs=51.8
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCccChHHHHHHHHHHcCCCC----CccCCCCHH-----
Q 002538 176 SAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDLQIEKNQEIIGKKIGLFD----DSWKNKNLD----- 246 (911)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~----~~~~~~~~~----- 246 (911)
.-..++|+|..|+|||||++.+.... .....++++..-+.-++..+.+.......... .+.+.....
T Consensus 164 ~Gqri~I~G~SGsGKTTLL~~Ia~l~----~pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~ 239 (450)
T PRK06002 164 AGQRIGIFAGSGVGKSTLLAMLARAD----AFDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAP 239 (450)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC----CCCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHH
Confidence 45689999999999999999887654 22334555544344455554443333221100 000111111
Q ss_pred HHHHHHHHHh--hcceEEEEEccccc
Q 002538 247 ERALEIFKIL--REKKFVLLLDDIWE 270 (911)
Q Consensus 247 ~~~~~l~~~L--~~k~~LlVlDdv~~ 270 (911)
.....+.+++ +++.+|+++||+-.
T Consensus 240 ~~a~~iAEyfrd~G~~Vll~~DslTr 265 (450)
T PRK06002 240 LTATAIAEYFRDRGENVLLIVDSVTR 265 (450)
T ss_pred HHHHHHHHHHHHcCCCEEEeccchHH
Confidence 1222344554 48999999999854
No 324
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=94.76 E-value=0.27 Score=56.96 Aligned_cols=133 Identities=17% Similarity=0.143 Sum_probs=75.4
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCccChHHHHHHHHHHcCCCCCccCCCCHHHHHHHHHHH
Q 002538 176 SAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDLQIEKNQEIIGKKIGLFDDSWKNKNLDERALEIFKI 255 (911)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 255 (911)
..+.+-++|++|.|||.||+++++.. ...|-.+.+- . +.. .+-......+.......
T Consensus 275 ~~~giLl~GpPGtGKT~lAkava~~~---~~~fi~v~~~---------~----l~s-------k~vGesek~ir~~F~~A 331 (494)
T COG0464 275 PPKGVLLYGPPGTGKTLLAKAVALES---RSRFISVKGS---------E----LLS-------KWVGESEKNIRELFEKA 331 (494)
T ss_pred CCCeeEEECCCCCCHHHHHHHHHhhC---CCeEEEeeCH---------H----Hhc-------cccchHHHHHHHHHHHH
Confidence 44588899999999999999999965 3444322211 0 100 01112222233333334
Q ss_pred hhcceEEEEEcccccccccc-------------cccCCCCCCCCCCCcEEEEEcCchhhhhc-c----CCcceEEccCCC
Q 002538 256 LREKKFVLLLDDIWERVNLN-------------KVGVPLPSPQSTTASKVVFTTRFINVCGS-M----EAHRNFKVECLT 317 (911)
Q Consensus 256 L~~k~~LlVlDdv~~~~~~~-------------~~~~~l~~~~~~~gs~IivTtR~~~v~~~-~----~~~~~~~l~~L~ 317 (911)
.+.....|.+|+++....+. .+...+.......+-.||-||-.+..... + .-...+.+.+-+
T Consensus 332 ~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd 411 (494)
T COG0464 332 RKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPD 411 (494)
T ss_pred HcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCC
Confidence 45788999999997542211 11111111122333344555554444321 1 224578889999
Q ss_pred HHHHHHHHHHHhCC
Q 002538 318 EKHAWELFQMKVGE 331 (911)
Q Consensus 318 ~~es~~Lf~~~a~~ 331 (911)
.++..+.|+.+...
T Consensus 412 ~~~r~~i~~~~~~~ 425 (494)
T COG0464 412 LEERLEIFKIHLRD 425 (494)
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999998764
No 325
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.75 E-value=0.012 Score=34.94 Aligned_cols=13 Identities=31% Similarity=0.629 Sum_probs=4.7
Q ss_pred EEeccCCCcCCcc
Q 002538 590 LIDLSYTSIRGLP 602 (911)
Q Consensus 590 ~L~L~~~~i~~lp 602 (911)
+|+|++|+++.+|
T Consensus 4 ~Ldls~n~l~~ip 16 (22)
T PF00560_consen 4 YLDLSGNNLTSIP 16 (22)
T ss_dssp EEEETSSEESEEG
T ss_pred EEECCCCcCEeCC
Confidence 3333333333333
No 326
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=94.75 E-value=0.12 Score=57.29 Aligned_cols=26 Identities=31% Similarity=0.515 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhh
Q 002538 176 SAGIIGLYGMGGVGKTTLLTRINNKF 201 (911)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 201 (911)
...+|.++|..|+||||+|..++...
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l 124 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYY 124 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35799999999999999999998776
No 327
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.74 E-value=0.15 Score=55.28 Aligned_cols=89 Identities=20% Similarity=0.195 Sum_probs=48.8
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCc-cChHHHHHHHHHHcCCCCCccCCCCHHHHHHHHHH
Q 002538 176 SAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKD-LQIEKNQEIIGKKIGLFDDSWKNKNLDERALEIFK 254 (911)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 254 (911)
+.++|+++|.+|+||||++..++... . ...+ .+..++.... .....-+...++.++.+.. ...+...+...+..
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L-~-~~Gk-kVglI~aDt~RiaAvEQLk~yae~lgipv~--v~~d~~~L~~aL~~ 314 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQF-H-GKKK-TVGFITTDHSRIGTVQQLQDYVKTIGFEVI--AVRDEAAMTRALTY 314 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHH-H-HcCC-cEEEEecCCcchHHHHHHHHHhhhcCCcEE--ecCCHHHHHHHHHH
Confidence 45799999999999999999998876 2 2222 3444443221 1122223344444443321 12345555544443
Q ss_pred Hhhc-ceEEEEEcccc
Q 002538 255 ILRE-KKFVLLLDDIW 269 (911)
Q Consensus 255 ~L~~-k~~LlVlDdv~ 269 (911)
.-.. +.=+|++|-.-
T Consensus 315 lk~~~~~DvVLIDTaG 330 (436)
T PRK11889 315 FKEEARVDYILIDTAG 330 (436)
T ss_pred HHhccCCCEEEEeCcc
Confidence 3221 23477778764
No 328
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=94.73 E-value=0.13 Score=52.08 Aligned_cols=23 Identities=35% Similarity=0.482 Sum_probs=21.4
Q ss_pred EEEEEcCCCChHHHHHHHHHhhh
Q 002538 179 IIGLYGMGGVGKTTLLTRINNKF 201 (911)
Q Consensus 179 vi~I~G~gGiGKTtLa~~v~~~~ 201 (911)
+|+|.|..|+||||+|+.+....
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l 23 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALL 23 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999876
No 329
>PTZ00035 Rad51 protein; Provisional
Probab=94.71 E-value=0.15 Score=55.12 Aligned_cols=92 Identities=17% Similarity=0.202 Sum_probs=54.7
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhhccC----CCCCceEEEEEeCCccChHHHHHHHHHHcCCCCCc-------cCCCC
Q 002538 176 SAGIIGLYGMGGVGKTTLLTRINNKFLES----PSDFDCVIWVVVSKDLQIEKNQEIIGKKIGLFDDS-------WKNKN 244 (911)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-------~~~~~ 244 (911)
...++.|+|.+|+|||||+..++-.. .. ...-..++|++....+..+.+ .++++.++...+. ....+
T Consensus 117 ~G~iteI~G~~GsGKT~l~~~l~~~~-qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g~~~~~~l~nI~~~~~~~ 194 (337)
T PTZ00035 117 TGSITELFGEFRTGKTQLCHTLCVTC-QLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFGLDPEDVLDNIAYARAYN 194 (337)
T ss_pred CCeEEEEECCCCCchhHHHHHHHHHh-ccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhCCChHhHhhceEEEccCC
Confidence 46799999999999999999887554 21 112346789998877777664 4445555443210 01123
Q ss_pred HHHHHHHH---HHHhh-cceEEEEEcccc
Q 002538 245 LDERALEI---FKILR-EKKFVLLLDDIW 269 (911)
Q Consensus 245 ~~~~~~~l---~~~L~-~k~~LlVlDdv~ 269 (911)
.++....+ ...+. .+--|||+|-+.
T Consensus 195 ~e~~~~~l~~~~~~l~~~~~~lvVIDSit 223 (337)
T PTZ00035 195 HEHQMQLLSQAAAKMAEERFALLIVDSAT 223 (337)
T ss_pred HHHHHHHHHHHHHHhhccCccEEEEECcH
Confidence 33333333 22332 344588888774
No 330
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=94.71 E-value=0.026 Score=53.01 Aligned_cols=23 Identities=39% Similarity=0.629 Sum_probs=21.0
Q ss_pred EEEEEcCCCChHHHHHHHHHhhh
Q 002538 179 IIGLYGMGGVGKTTLLTRINNKF 201 (911)
Q Consensus 179 vi~I~G~gGiGKTtLa~~v~~~~ 201 (911)
+|.++|++|+||||+|+.+....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~ 23 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRL 23 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHS
T ss_pred CEEEECCCCCCHHHHHHHHHHHC
Confidence 68899999999999999998775
No 331
>PRK13531 regulatory ATPase RavA; Provisional
Probab=94.70 E-value=0.048 Score=60.71 Aligned_cols=44 Identities=14% Similarity=0.138 Sum_probs=37.1
Q ss_pred ccccchHHHHHHHHHHhccCCceEEEEEcCCCChHHHHHHHHHhhh
Q 002538 156 AIVKGLESTLEDVWRCLVEESAGIIGLYGMGGVGKTTLLTRINNKF 201 (911)
Q Consensus 156 ~~~~Gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 201 (911)
..++||++.++.+...+..+ ..|.|.|.+|+|||++|+.+....
T Consensus 20 ~~i~gre~vI~lll~aalag--~hVLL~GpPGTGKT~LAraLa~~~ 63 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAF 63 (498)
T ss_pred hhccCcHHHHHHHHHHHccC--CCEEEECCCChhHHHHHHHHHHHh
Confidence 34679999999998887643 467799999999999999999876
No 332
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=94.70 E-value=0.069 Score=58.26 Aligned_cols=47 Identities=23% Similarity=0.303 Sum_probs=36.9
Q ss_pred cccccchHHHHHHHHHHhccC--------------CceEEEEEcCCCChHHHHHHHHHhhh
Q 002538 155 EAIVKGLESTLEDVWRCLVEE--------------SAGIIGLYGMGGVGKTTLLTRINNKF 201 (911)
Q Consensus 155 ~~~~~Gr~~~~~~l~~~L~~~--------------~~~vi~I~G~gGiGKTtLa~~v~~~~ 201 (911)
+..|+|.++.++.+.-.+... ..+.|.++|++|+|||++|+.+....
T Consensus 11 d~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l 71 (441)
T TIGR00390 11 DKYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLA 71 (441)
T ss_pred hhhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 345779998888876555421 23678899999999999999999886
No 333
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=94.70 E-value=0.027 Score=56.72 Aligned_cols=26 Identities=38% Similarity=0.558 Sum_probs=23.6
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhh
Q 002538 176 SAGIIGLYGMGGVGKTTLLTRINNKF 201 (911)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 201 (911)
...+|+|+|.+|+||||||+.+....
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~l 30 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQL 30 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45799999999999999999999876
No 334
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=94.70 E-value=0.094 Score=51.10 Aligned_cols=127 Identities=13% Similarity=0.183 Sum_probs=63.5
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCC--ccChHHHHHHHHHHcCCC-CCc--cC-------CC
Q 002538 176 SAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSK--DLQIEKNQEIIGKKIGLF-DDS--WK-------NK 243 (911)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~--~~~~~~~~~~i~~~l~~~-~~~--~~-------~~ 243 (911)
.-.+++|+|..|.|||||.+.++... . .....+++.... ........ ..++.. .+. .. -.
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~-~---~~~G~i~~~g~~~~~~~~~~~~----~~i~~~~q~~~~~~~tv~~~lLS 98 (173)
T cd03246 27 PGESLAIIGPSGSGKSTLARLILGLL-R---PTSGRVRLDGADISQWDPNELG----DHVGYLPQDDELFSGSIAENILS 98 (173)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc-C---CCCCeEEECCEEcccCCHHHHH----hheEEECCCCccccCcHHHHCcC
Confidence 45699999999999999999998865 1 222333332111 01111111 111110 000 00 01
Q ss_pred CHHHHHHHHHHHhhcceEEEEEccccccccc---ccccCCCCCCCCCCCcEEEEEcCchhhhhccCCcceEEc
Q 002538 244 NLDERALEIFKILREKKFVLLLDDIWERVNL---NKVGVPLPSPQSTTASKVVFTTRFINVCGSMEAHRNFKV 313 (911)
Q Consensus 244 ~~~~~~~~l~~~L~~k~~LlVlDdv~~~~~~---~~~~~~l~~~~~~~gs~IivTtR~~~v~~~~~~~~~~~l 313 (911)
.-+...-.+...+..++-++++|+.-..-+. ..+...+.. ....|..||++|.+.+... . .++++.+
T Consensus 99 ~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~-~~~~~~tii~~sh~~~~~~-~-~d~v~~l 168 (173)
T cd03246 99 GGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAA-LKAAGATRIVIAHRPETLA-S-ADRILVL 168 (173)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHH-HHhCCCEEEEEeCCHHHHH-h-CCEEEEE
Confidence 1122333455666677789999998653221 111111110 1123667888888777654 2 4444444
No 335
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=94.69 E-value=0.31 Score=48.24 Aligned_cols=183 Identities=17% Similarity=0.239 Sum_probs=97.5
Q ss_pred ccchHHHHHHHHHHhcc-------------CCceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCccChHH
Q 002538 158 VKGLESTLEDVWRCLVE-------------ESAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDLQIEK 224 (911)
Q Consensus 158 ~~Gr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~ 224 (911)
+-|.++.+++|.+-+.- .+.+-+.++|++|.|||-||++|++.. .+-|+.||.. +-
T Consensus 149 iGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht--------~c~firvsgs---el 217 (404)
T KOG0728|consen 149 IGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHT--------DCTFIRVSGS---EL 217 (404)
T ss_pred hccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhc--------ceEEEEechH---HH
Confidence 43567777776665531 356788899999999999999999876 2345556543 22
Q ss_pred HHHHHHHHcCCCCCccCCCCHHHHHHHHHHHh-hcceEEEEEccccccc------------c----cccccCCCCCCCCC
Q 002538 225 NQEIIGKKIGLFDDSWKNKNLDERALEIFKIL-REKKFVLLLDDIWERV------------N----LNKVGVPLPSPQST 287 (911)
Q Consensus 225 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L-~~k~~LlVlDdv~~~~------------~----~~~~~~~l~~~~~~ 287 (911)
+++-|.+.. .+...+.-.- ..-+.+|..|++++.. + ..++...+......
T Consensus 218 vqk~igegs-------------rmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeat 284 (404)
T KOG0728|consen 218 VQKYIGEGS-------------RMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEAT 284 (404)
T ss_pred HHHHhhhhH-------------HHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccc
Confidence 222222111 1112222111 2456788888876531 0 00111111111234
Q ss_pred CCcEEEEEcCchhhhhc--c---CCcceEEccCCCHHHHHHHHHHHhCCcccCCCccHHHHHHHHHHHhCCcchHHHHHH
Q 002538 288 TASKVVFTTRFINVCGS--M---EAHRNFKVECLTEKHAWELFQMKVGEETLKSHPHVFELAQVVAKECGGLPLALITIG 362 (911)
Q Consensus 288 ~gs~IivTtR~~~v~~~--~---~~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~g 362 (911)
+.-|||..|..-++... + ..++.++..+-+++.-.++++-+....+...--++..++.++....|.---++-+=|
T Consensus 285 knikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk~vctea 364 (404)
T KOG0728|consen 285 KNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVKGVCTEA 364 (404)
T ss_pred cceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchhhhhhhhh
Confidence 56788888876666432 1 234567777777777777777665444322223455555555433332223444444
Q ss_pred hh
Q 002538 363 RA 364 (911)
Q Consensus 363 ~~ 364 (911)
++
T Consensus 365 gm 366 (404)
T KOG0728|consen 365 GM 366 (404)
T ss_pred hH
Confidence 44
No 336
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.63 E-value=0.12 Score=50.12 Aligned_cols=127 Identities=17% Similarity=0.214 Sum_probs=64.1
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCc--cChHHHHHHHHHHcCCC-CC-ccCC--------
Q 002538 175 ESAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKD--LQIEKNQEIIGKKIGLF-DD-SWKN-------- 242 (911)
Q Consensus 175 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~--~~~~~~~~~i~~~l~~~-~~-~~~~-------- 242 (911)
..-.+++|+|..|.|||||.+.++.-. . .....+++..... ..... ....++.. .+ ....
T Consensus 26 ~~G~~~~l~G~nGsGKstLl~~i~G~~-~---~~~G~i~~~g~~~~~~~~~~----~~~~i~~~~~~~~~~~~t~~e~lL 97 (171)
T cd03228 26 KPGEKVAIVGPSGSGKSTLLKLLLRLY-D---PTSGEILIDGVDLRDLDLES----LRKNIAYVPQDPFLFSGTIRENIL 97 (171)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCC-C---CCCCEEEECCEEhhhcCHHH----HHhhEEEEcCCchhccchHHHHhh
Confidence 355799999999999999999998875 2 2233333321110 01111 11111110 00 0000
Q ss_pred CCHHHHHHHHHHHhhcceEEEEEcccccccc---cccccCCCCCCCCCCCcEEEEEcCchhhhhccCCcceEEc
Q 002538 243 KNLDERALEIFKILREKKFVLLLDDIWERVN---LNKVGVPLPSPQSTTASKVVFTTRFINVCGSMEAHRNFKV 313 (911)
Q Consensus 243 ~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~~---~~~~~~~l~~~~~~~gs~IivTtR~~~v~~~~~~~~~~~l 313 (911)
..-+...-.+...+..++-+++||+....-+ .+.+...+. ....+..||++|.+.+.... .++++.+
T Consensus 98 S~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~--~~~~~~tii~~sh~~~~~~~--~d~~~~l 167 (171)
T cd03228 98 SGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALR--ALAKGKTVIVIAHRLSTIRD--ADRIIVL 167 (171)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHH--HhcCCCEEEEEecCHHHHHh--CCEEEEE
Confidence 0112222335566667888999999864322 111211111 11124668888887776643 4444444
No 337
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.62 E-value=0.014 Score=34.78 Aligned_cols=21 Identities=33% Similarity=0.418 Sum_probs=14.2
Q ss_pred CCcEEEccCCCCcccCccccC
Q 002538 564 SLKVLNLSFTKRHKFPSGISK 584 (911)
Q Consensus 564 ~L~~L~L~~~~~~~lp~~i~~ 584 (911)
+|++||+++|+++.+|+++++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 467777777777777766554
No 338
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.59 E-value=0.048 Score=53.01 Aligned_cols=27 Identities=30% Similarity=0.583 Sum_probs=23.7
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHhhh
Q 002538 175 ESAGIIGLYGMGGVGKTTLLTRINNKF 201 (911)
Q Consensus 175 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 201 (911)
+.-.+++|+|..|.|||||++.+..-.
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 455799999999999999999998764
No 339
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=94.55 E-value=0.03 Score=55.44 Aligned_cols=26 Identities=35% Similarity=0.422 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhh
Q 002538 176 SAGIIGLYGMGGVGKTTLLTRINNKF 201 (911)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 201 (911)
+.++|.|+|++|+||||+|+.+....
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 46799999999999999999998765
No 340
>PRK03839 putative kinase; Provisional
Probab=94.54 E-value=0.029 Score=55.13 Aligned_cols=23 Identities=43% Similarity=0.650 Sum_probs=21.4
Q ss_pred EEEEEcCCCChHHHHHHHHHhhh
Q 002538 179 IIGLYGMGGVGKTTLLTRINNKF 201 (911)
Q Consensus 179 vi~I~G~gGiGKTtLa~~v~~~~ 201 (911)
.|.|.|++|+||||+|+.+++..
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~ 24 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999986
No 341
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.54 E-value=1.4 Score=48.27 Aligned_cols=150 Identities=17% Similarity=0.182 Sum_probs=81.9
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCccChHHHHHHHHHHcCCCCCccCCCCHHHHHHHHHHHh-
Q 002538 178 GIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDLQIEKNQEIIGKKIGLFDDSWKNKNLDERALEIFKIL- 256 (911)
Q Consensus 178 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L- 256 (911)
+-.-++|++|.|||++..+++|.. .|+.. =+..+..-+- ..|++.|
T Consensus 236 RGYLLYGPPGTGKSS~IaAmAn~L-----~ydIy-dLeLt~v~~n---------------------------~dLr~LL~ 282 (457)
T KOG0743|consen 236 RGYLLYGPPGTGKSSFIAAMANYL-----NYDIY-DLELTEVKLD---------------------------SDLRHLLL 282 (457)
T ss_pred ccceeeCCCCCCHHHHHHHHHhhc-----CCceE-EeeeccccCc---------------------------HHHHHHHH
Confidence 457799999999999999999986 24321 1111111111 1134444
Q ss_pred -hcceEEEEEcccccccc-----------cc---------cccCCCCCCCCCC-CcEEE-EEcCchhhhh--cc---CCc
Q 002538 257 -REKKFVLLLDDIWERVN-----------LN---------KVGVPLPSPQSTT-ASKVV-FTTRFINVCG--SM---EAH 308 (911)
Q Consensus 257 -~~k~~LlVlDdv~~~~~-----------~~---------~~~~~l~~~~~~~-gs~Ii-vTtR~~~v~~--~~---~~~ 308 (911)
...+.+||+.|++-.-+ .+ -+...+...+... +=||| +||-..+-.. -+ ..+
T Consensus 283 ~t~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmD 362 (457)
T KOG0743|consen 283 ATPNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMD 362 (457)
T ss_pred hCCCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcce
Confidence 23567888888864311 11 0111111112222 23555 5887665532 11 224
Q ss_pred ceEEccCCCHHHHHHHHHHHhCCcccCCCccHHHHHHHHHHHhCCcchHHHHHHhhhc
Q 002538 309 RNFKVECLTEKHAWELFQMKVGEETLKSHPHVFELAQVVAKECGGLPLALITIGRAMA 366 (911)
Q Consensus 309 ~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~g~~l~ 366 (911)
..+.|.-.+.+.-..||.+..+.+. .+ .+..+|.+.-.|.-+.-..++..|-
T Consensus 363 mhI~mgyCtf~~fK~La~nYL~~~~--~h----~L~~eie~l~~~~~~tPA~V~e~lm 414 (457)
T KOG0743|consen 363 MHIYMGYCTFEAFKTLASNYLGIEE--DH----RLFDEIERLIEETEVTPAQVAEELM 414 (457)
T ss_pred eEEEcCCCCHHHHHHHHHHhcCCCC--Cc----chhHHHHHHhhcCccCHHHHHHHHh
Confidence 4678999999999999999887543 22 3445555555555554444444443
No 342
>PRK06762 hypothetical protein; Provisional
Probab=94.53 E-value=0.031 Score=54.05 Aligned_cols=25 Identities=28% Similarity=0.538 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhh
Q 002538 177 AGIIGLYGMGGVGKTTLLTRINNKF 201 (911)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa~~v~~~~ 201 (911)
..+|.|.|++|+||||+|+.+.+..
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999998875
No 343
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=94.52 E-value=0.18 Score=51.73 Aligned_cols=41 Identities=29% Similarity=0.324 Sum_probs=30.9
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCc
Q 002538 176 SAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKD 219 (911)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~ 219 (911)
.-.++.|.|.+|+||||+|.++..... ..-..++|++....
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~---~~g~~~~~is~e~~ 59 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGL---RDGDPVIYVTTEES 59 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHH---hcCCeEEEEEccCC
Confidence 457999999999999999998776541 22457888876443
No 344
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=94.51 E-value=0.056 Score=52.54 Aligned_cols=23 Identities=35% Similarity=0.540 Sum_probs=21.2
Q ss_pred EEEEEcCCCChHHHHHHHHHhhh
Q 002538 179 IIGLYGMGGVGKTTLLTRINNKF 201 (911)
Q Consensus 179 vi~I~G~gGiGKTtLa~~v~~~~ 201 (911)
.|.|.|.+|.||||+|+.+.+..
T Consensus 2 riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999985
No 345
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=94.50 E-value=0.2 Score=49.65 Aligned_cols=45 Identities=24% Similarity=0.375 Sum_probs=35.0
Q ss_pred cccchHHHHHHHHHHh----ccCCceEEEEEcCCCChHHHHHHHHHhhh
Q 002538 157 IVKGLESTLEDVWRCL----VEESAGIIGLYGMGGVGKTTLLTRINNKF 201 (911)
Q Consensus 157 ~~~Gr~~~~~~l~~~L----~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 201 (911)
.++|.|..++.+++-- ..-...-|-+||.-|.||++|++++.+.+
T Consensus 61 ~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~ 109 (287)
T COG2607 61 DLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEY 109 (287)
T ss_pred HHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHH
Confidence 3568888777765533 22355678899999999999999999998
No 346
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=94.49 E-value=0.13 Score=51.10 Aligned_cols=43 Identities=19% Similarity=0.291 Sum_probs=29.5
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhhccCCCCC-------ceEEEEEeCCc
Q 002538 177 AGIIGLYGMGGVGKTTLLTRINNKFLESPSDF-------DCVIWVVVSKD 219 (911)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f-------~~~~wv~~s~~ 219 (911)
-.++.|.|.+|+||||++..+..........| ..++|+.....
T Consensus 32 g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~ 81 (193)
T PF13481_consen 32 GELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS 81 (193)
T ss_dssp TSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC
Confidence 45888999999999999999988873222222 36788876665
No 347
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=94.48 E-value=0.14 Score=49.07 Aligned_cols=119 Identities=19% Similarity=0.199 Sum_probs=60.5
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEE---EEEeCCccChHHHHHHHHHHcCCCCC--ccCCCCH------
Q 002538 177 AGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVI---WVVVSKDLQIEKNQEIIGKKIGLFDD--SWKNKNL------ 245 (911)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~---wv~~s~~~~~~~~~~~i~~~l~~~~~--~~~~~~~------ 245 (911)
...|-|++..|.||||.|..++-+.. ...+. ++ |+...........++...-.+..... .+...+.
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~ra~--~~g~~-v~ivQFlKg~~~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~ 81 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALRAL--GHGKK-VGVIQFIKGAWPNGERAAFEPHGVEFQVMGTGFTWETQNREADTAI 81 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHHHH--HCCCe-EEEEEEecCCcccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHH
Confidence 46788999999999999998887762 23332 32 33333223434444332000000000 0111111
Q ss_pred -HHHHHHHHHHhhcceE-EEEEcccccc-----cccccccCCCCCCCCCCCcEEEEEcCchh
Q 002538 246 -DERALEIFKILREKKF-VLLLDDIWER-----VNLNKVGVPLPSPQSTTASKVVFTTRFIN 300 (911)
Q Consensus 246 -~~~~~~l~~~L~~k~~-LlVlDdv~~~-----~~~~~~~~~l~~~~~~~gs~IivTtR~~~ 300 (911)
.+......+.+...+| |||||.+-.. .+.+++...+. ....+.-||+|-|+..
T Consensus 82 ~~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~--~rp~~~evVlTGR~~p 141 (173)
T TIGR00708 82 AKAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQ--ERPGHQHVIITGRGCP 141 (173)
T ss_pred HHHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHH--hCCCCCEEEEECCCCC
Confidence 1122233344444444 9999998532 22233333333 3345678999999653
No 348
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.47 E-value=0.058 Score=51.92 Aligned_cols=117 Identities=15% Similarity=0.168 Sum_probs=62.4
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCc--cChHHHHHHHHHHcCCCCCccCCCCHHHHHHHHH
Q 002538 176 SAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKD--LQIEKNQEIIGKKIGLFDDSWKNKNLDERALEIF 253 (911)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~--~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 253 (911)
.-.+++|+|..|.|||||.+.++... ......+++..... .+.... ....++... +-..-+...-.+.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~----~~~~G~v~~~g~~~~~~~~~~~---~~~~i~~~~---qLS~G~~qrl~la 94 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLY----KPDSGEILVDGKEVSFASPRDA---RRAGIAMVY---QLSVGERQMVEIA 94 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC----CCCCeEEEECCEECCcCCHHHH---HhcCeEEEE---ecCHHHHHHHHHH
Confidence 45799999999999999999998775 23344455432111 111111 111111100 1122233444566
Q ss_pred HHhhcceEEEEEcccccccc---cccccCCCCCCCCCCCcEEEEEcCchhhhh
Q 002538 254 KILREKKFVLLLDDIWERVN---LNKVGVPLPSPQSTTASKVVFTTRFINVCG 303 (911)
Q Consensus 254 ~~L~~k~~LlVlDdv~~~~~---~~~~~~~l~~~~~~~gs~IivTtR~~~v~~ 303 (911)
..+..++-++++|+.-..-+ .+.+...+.. ....|..||++|.+.+...
T Consensus 95 ral~~~p~illlDEP~~~LD~~~~~~l~~~l~~-~~~~~~tiii~sh~~~~~~ 146 (163)
T cd03216 95 RALARNARLLILDEPTAALTPAEVERLFKVIRR-LRAQGVAVIFISHRLDEVF 146 (163)
T ss_pred HHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHH-HHHCCCEEEEEeCCHHHHH
Confidence 66777888999999854322 1122111110 1123566888888776443
No 349
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=94.44 E-value=0.21 Score=52.10 Aligned_cols=128 Identities=16% Similarity=0.097 Sum_probs=67.6
Q ss_pred HHHHHHHhcc-CCceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCccChHHHHHHHHHHcC-CCCCcc--
Q 002538 165 LEDVWRCLVE-ESAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDLQIEKNQEIIGKKIG-LFDDSW-- 240 (911)
Q Consensus 165 ~~~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~-~~~~~~-- 240 (911)
.+.++..+.+ .+...++|+|..|.|||||.+.+.... ......+++..-+ ....+-...++.... .+....
T Consensus 98 ~~~~l~~l~~~~~~~~~~i~g~~g~GKttl~~~l~~~~----~~~~G~i~~~g~~-v~~~d~~~ei~~~~~~~~q~~~~~ 172 (270)
T TIGR02858 98 ADKLLPYLVRNNRVLNTLIISPPQCGKTTLLRDLARIL----STGISQLGLRGKK-VGIVDERSEIAGCVNGVPQHDVGI 172 (270)
T ss_pred HHHHHHHHHhCCCeeEEEEEcCCCCCHHHHHHHHhCcc----CCCCceEEECCEE-eecchhHHHHHHHhcccccccccc
Confidence 3444444443 456789999999999999999998876 2223334432111 100011122322221 111110
Q ss_pred --CCCCHHHHHHHHHHHhh-cceEEEEEcccccccccccccCCCCCCCCCCCcEEEEEcCchhhh
Q 002538 241 --KNKNLDERALEIFKILR-EKKFVLLLDDIWERVNLNKVGVPLPSPQSTTASKVVFTTRFINVC 302 (911)
Q Consensus 241 --~~~~~~~~~~~l~~~L~-~k~~LlVlDdv~~~~~~~~~~~~l~~~~~~~gs~IivTtR~~~v~ 302 (911)
+-.+.......+...+. ..+-++++|.+-..+.+..+...+ ..|..||+||-+..+.
T Consensus 173 r~~v~~~~~k~~~~~~~i~~~~P~villDE~~~~e~~~~l~~~~-----~~G~~vI~ttH~~~~~ 232 (270)
T TIGR02858 173 RTDVLDGCPKAEGMMMLIRSMSPDVIVVDEIGREEDVEALLEAL-----HAGVSIIATAHGRDVE 232 (270)
T ss_pred cccccccchHHHHHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHH-----hCCCEEEEEechhHHH
Confidence 00011111223444433 578899999997666555554332 2467799999866553
No 350
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=94.43 E-value=0.11 Score=57.84 Aligned_cols=47 Identities=23% Similarity=0.224 Sum_probs=35.7
Q ss_pred cccccchHHHHHHHHHHhcc-------C---------CceEEEEEcCCCChHHHHHHHHHhhh
Q 002538 155 EAIVKGLESTLEDVWRCLVE-------E---------SAGIIGLYGMGGVGKTTLLTRINNKF 201 (911)
Q Consensus 155 ~~~~~Gr~~~~~~l~~~L~~-------~---------~~~vi~I~G~gGiGKTtLa~~v~~~~ 201 (911)
+..|+|.+..++.+...+.. . ..+.|.++|++|+|||++|+.++...
T Consensus 70 ~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l 132 (412)
T PRK05342 70 DQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARIL 132 (412)
T ss_pred hhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHh
Confidence 34578999988877554421 0 12568899999999999999998765
No 351
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=94.42 E-value=0.091 Score=58.72 Aligned_cols=94 Identities=19% Similarity=0.248 Sum_probs=59.7
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCcc-ChHHHHHHHHHHcCCCC-----CccCCCCH---
Q 002538 175 ESAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDL-QIEKNQEIIGKKIGLFD-----DSWKNKNL--- 245 (911)
Q Consensus 175 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~-----~~~~~~~~--- 245 (911)
.+-..++|+|..|+|||||+.++.+.. . +.+-+.++++-+++.. ...++.+.+...-.+.. ...+....
T Consensus 141 gkGQR~gIfa~~G~GKt~Ll~~~~~~~-~-~~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~ 218 (461)
T PRK12597 141 AKGGKTGLFGGAGVGKTVLMMELIFNI-S-KQHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARM 218 (461)
T ss_pred ccCCEEEeecCCCCChhHHHHHHHHHH-H-hhCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHH
Confidence 356789999999999999999998887 2 2356788888776554 44556666554322111 01011111
Q ss_pred --HHHHHHHHHHh--h-cceEEEEEccccc
Q 002538 246 --DERALEIFKIL--R-EKKFVLLLDDIWE 270 (911)
Q Consensus 246 --~~~~~~l~~~L--~-~k~~LlVlDdv~~ 270 (911)
-..+..+.+++ + ++++|+++||+-.
T Consensus 219 ~a~~~a~tiAEyfrd~~G~~VLl~~DslTR 248 (461)
T PRK12597 219 RVVLTGLTIAEYLRDEEKEDVLLFIDNIFR 248 (461)
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEeccchH
Confidence 12233455666 3 7999999999954
No 352
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.41 E-value=0.18 Score=55.34 Aligned_cols=90 Identities=18% Similarity=0.212 Sum_probs=52.8
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhhccCC-CCCceEEEEEeCCc-cChHHHHHHHHHHcCCCCCccCCCCHHHHHHHHH
Q 002538 176 SAGIIGLYGMGGVGKTTLLTRINNKFLESP-SDFDCVIWVVVSKD-LQIEKNQEIIGKKIGLFDDSWKNKNLDERALEIF 253 (911)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 253 (911)
..++|.++|..|+||||.+..++....... ..-..+..++...- ......++..++.++.+-. ...+..++...+.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~--~~~~~~~l~~~L~ 250 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVK--AIESFKDLKEEIT 250 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceE--eeCcHHHHHHHHH
Confidence 457999999999999999999988762111 12234555554432 1222335566666665421 2234444444444
Q ss_pred HHhhcceEEEEEcccc
Q 002538 254 KILREKKFVLLLDDIW 269 (911)
Q Consensus 254 ~~L~~k~~LlVlDdv~ 269 (911)
.. .+.-+|++|.+.
T Consensus 251 ~~--~~~DlVLIDTaG 264 (388)
T PRK12723 251 QS--KDFDLVLVDTIG 264 (388)
T ss_pred Hh--CCCCEEEEcCCC
Confidence 32 345688889874
No 353
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=94.40 E-value=0.16 Score=52.83 Aligned_cols=90 Identities=18% Similarity=0.142 Sum_probs=56.5
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCccChHHHHHHHHHHcCCCCCccCCCCHH---HHHHHH
Q 002538 176 SAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDLQIEKNQEIIGKKIGLFDDSWKNKNLD---ERALEI 252 (911)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~---~~~~~l 252 (911)
..+++=|+|+.|.||||+|.+++-.. +..-..++|++.-+.+++..+..--...+..-. -....+.+ +.+..+
T Consensus 59 ~g~ItEiyG~~gsGKT~lal~~~~~a---q~~g~~a~fIDtE~~l~p~r~~~l~~~~~d~l~-v~~~~~~e~q~~i~~~~ 134 (279)
T COG0468 59 RGRITEIYGPESSGKTTLALQLVANA---QKPGGKAAFIDTEHALDPERAKQLGVDLLDNLL-VSQPDTGEQQLEIAEKL 134 (279)
T ss_pred cceEEEEecCCCcchhhHHHHHHHHh---hcCCCeEEEEeCCCCCCHHHHHHHHHhhhccee-EecCCCHHHHHHHHHHH
Confidence 55789999999999999999887766 444558999999999988765433322121100 00122222 233333
Q ss_pred HHHhhcceEEEEEcccc
Q 002538 253 FKILREKKFVLLLDDIW 269 (911)
Q Consensus 253 ~~~L~~k~~LlVlDdv~ 269 (911)
......+--|+|+|-|-
T Consensus 135 ~~~~~~~i~LvVVDSva 151 (279)
T COG0468 135 ARSGAEKIDLLVVDSVA 151 (279)
T ss_pred HHhccCCCCEEEEecCc
Confidence 33333445699999874
No 354
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=94.34 E-value=0.12 Score=55.35 Aligned_cols=85 Identities=25% Similarity=0.389 Sum_probs=54.9
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCccChHHHHHHHHHHcCCCCCcc---CCCCHHHHHHHH
Q 002538 176 SAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDLQIEKNQEIIGKKIGLFDDSW---KNKNLDERALEI 252 (911)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 252 (911)
.-.+|.|=|-+|||||||.-++..+.. +.- .+++|+..+... + .+--++.++...+.. .+.+.+...+.+
T Consensus 92 ~Gs~iLIgGdPGIGKSTLLLQva~~lA---~~~-~vLYVsGEES~~--Q-iklRA~RL~~~~~~l~l~aEt~~e~I~~~l 164 (456)
T COG1066 92 PGSVILIGGDPGIGKSTLLLQVAARLA---KRG-KVLYVSGEESLQ--Q-IKLRADRLGLPTNNLYLLAETNLEDIIAEL 164 (456)
T ss_pred cccEEEEccCCCCCHHHHHHHHHHHHH---hcC-cEEEEeCCcCHH--H-HHHHHHHhCCCccceEEehhcCHHHHHHHH
Confidence 456999999999999999999999982 222 788886554432 2 223345565543221 234444444444
Q ss_pred HHHhhcceEEEEEccccc
Q 002538 253 FKILREKKFVLLLDDIWE 270 (911)
Q Consensus 253 ~~~L~~k~~LlVlDdv~~ 270 (911)
.+ .+.-++|+|-+..
T Consensus 165 ~~---~~p~lvVIDSIQT 179 (456)
T COG1066 165 EQ---EKPDLVVIDSIQT 179 (456)
T ss_pred Hh---cCCCEEEEeccce
Confidence 43 6788999998854
No 355
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=94.33 E-value=0.074 Score=58.67 Aligned_cols=91 Identities=22% Similarity=0.253 Sum_probs=54.4
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCcc-ChHHHHHHHHHHcCCCC-----CccCCCCHH--
Q 002538 175 ESAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDL-QIEKNQEIIGKKIGLFD-----DSWKNKNLD-- 246 (911)
Q Consensus 175 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~-----~~~~~~~~~-- 246 (911)
..-..++|+|..|+|||||++.+.+.. ..+.++.+-+++.. ...++.+.++..-++.. ...+.....
T Consensus 160 ~~GqrigI~G~sG~GKSTLL~~I~~~~-----~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~ 234 (444)
T PRK08972 160 GKGQRMGLFAGSGVGKSVLLGMMTRGT-----TADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRL 234 (444)
T ss_pred cCCCEEEEECCCCCChhHHHHHhccCC-----CCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHH
Confidence 355789999999999999999998654 22456666666554 33445555543322111 000111111
Q ss_pred ---HHHHHHHHHh--hcceEEEEEccccc
Q 002538 247 ---ERALEIFKIL--REKKFVLLLDDIWE 270 (911)
Q Consensus 247 ---~~~~~l~~~L--~~k~~LlVlDdv~~ 270 (911)
..+..+.+++ +++++|+++||+-.
T Consensus 235 ~a~~~A~tiAEyfrd~G~~VLl~~DslTR 263 (444)
T PRK08972 235 KGCETATTIAEYFRDQGLNVLLLMDSLTR 263 (444)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEEcChHH
Confidence 1223345555 58999999999954
No 356
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=94.32 E-value=1.5 Score=46.53 Aligned_cols=169 Identities=15% Similarity=0.080 Sum_probs=90.0
Q ss_pred HHHHHHHhccCCc-eEEEEEcCCCChHHHHHHHHHhhhcc-------CCCCCceEEEEEe-CCccChHHHHHHHHHHcCC
Q 002538 165 LEDVWRCLVEESA-GIIGLYGMGGVGKTTLLTRINNKFLE-------SPSDFDCVIWVVV-SKDLQIEKNQEIIGKKIGL 235 (911)
Q Consensus 165 ~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~-------~~~~f~~~~wv~~-s~~~~~~~~~~~i~~~l~~ 235 (911)
++.+.+.+..++. +++-++|..|.||+++|+.+.+...- ...+-+...++.. +.....+++. .+.+.+..
T Consensus 5 ~~~l~~~i~~~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~Ir-~l~~~~~~ 83 (299)
T PRK07132 5 IKFLDNSATQNKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEFL-SAINKLYF 83 (299)
T ss_pred HHHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHHH-HHHHHhcc
Confidence 3445555555554 46669999999999999999877511 0111112333321 1122222222 22222211
Q ss_pred CCCccCCCCHHHHHHHHHHHhhcceEEEEEcccccccc--cccccCCCCCCCCCCCcEEEEEc-Cchhhhhc-cCCcceE
Q 002538 236 FDDSWKNKNLDERALEIFKILREKKFVLLLDDIWERVN--LNKVGVPLPSPQSTTASKVVFTT-RFINVCGS-MEAHRNF 311 (911)
Q Consensus 236 ~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~~--~~~~~~~l~~~~~~~gs~IivTt-R~~~v~~~-~~~~~~~ 311 (911)
.. .-.+.+=++|+||+..... ...+...+. ....++.+|++| ....+... .+....+
T Consensus 84 ~~-----------------~~~~~~KvvII~~~e~m~~~a~NaLLK~LE--EPp~~t~~il~~~~~~kll~TI~SRc~~~ 144 (299)
T PRK07132 84 SS-----------------FVQSQKKILIIKNIEKTSNSLLNALLKTIE--EPPKDTYFLLTTKNINKVLPTIVSRCQVF 144 (299)
T ss_pred CC-----------------cccCCceEEEEecccccCHHHHHHHHHHhh--CCCCCeEEEEEeCChHhChHHHHhCeEEE
Confidence 10 0014677888999865432 233333333 223456666555 44444432 3446789
Q ss_pred EccCCCHHHHHHHHHHHhCCcccCCCccHHHHHHHHHHHhCCcchHHHHHH
Q 002538 312 KVECLTEKHAWELFQMKVGEETLKSHPHVFELAQVVAKECGGLPLALITIG 362 (911)
Q Consensus 312 ~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~g 362 (911)
++.++++++..+.+... +.+ ++.+..++...+|.--|+..+.
T Consensus 145 ~f~~l~~~~l~~~l~~~-~~~--------~~~a~~~a~~~~~~~~a~~~~~ 186 (299)
T PRK07132 145 NVKEPDQQKILAKLLSK-NKE--------KEYNWFYAYIFSNFEQAEKYIN 186 (299)
T ss_pred ECCCCCHHHHHHHHHHc-CCC--------hhHHHHHHHHcCCHHHHHHHHh
Confidence 99999999988777654 111 2446666777777334555543
No 357
>PTZ00088 adenylate kinase 1; Provisional
Probab=94.32 E-value=0.034 Score=56.56 Aligned_cols=23 Identities=39% Similarity=0.512 Sum_probs=21.0
Q ss_pred EEEEEcCCCChHHHHHHHHHhhh
Q 002538 179 IIGLYGMGGVGKTTLLTRINNKF 201 (911)
Q Consensus 179 vi~I~G~gGiGKTtLa~~v~~~~ 201 (911)
.|.|.|++|+||||+|+.+.+..
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~ 30 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKE 30 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 38899999999999999998876
No 358
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=94.32 E-value=0.2 Score=55.93 Aligned_cols=94 Identities=19% Similarity=0.275 Sum_probs=58.2
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCcc-ChHHHHHHHHHHcCCCC-----CccCCCCHH--
Q 002538 175 ESAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDL-QIEKNQEIIGKKIGLFD-----DSWKNKNLD-- 246 (911)
Q Consensus 175 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~-----~~~~~~~~~-- 246 (911)
.+-..++|.|..|+|||||+.++.... .. .+-+.++++-+++.. ...++.+.+...-.+.. ...+.....
T Consensus 142 gkGQR~gIfa~~GvGKt~Ll~~i~~~~-~~-~~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~ 219 (463)
T PRK09280 142 AKGGKIGLFGGAGVGKTVLIQELINNI-AK-EHGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARL 219 (463)
T ss_pred ccCCEEEeecCCCCChhHHHHHHHHHH-Hh-cCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHH
Confidence 356789999999999999999987776 21 222467777776654 44556666654322211 011111111
Q ss_pred ---HHHHHHHHHh---hcceEEEEEccccc
Q 002538 247 ---ERALEIFKIL---REKKFVLLLDDIWE 270 (911)
Q Consensus 247 ---~~~~~l~~~L---~~k~~LlVlDdv~~ 270 (911)
.....+.+++ +++++||++||+-.
T Consensus 220 ~a~~~a~tiAEyfrd~~G~~VLll~DslTR 249 (463)
T PRK09280 220 RVALTGLTMAEYFRDVEGQDVLLFIDNIFR 249 (463)
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEecchHH
Confidence 2233456666 67999999999954
No 359
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=94.31 E-value=0.12 Score=61.30 Aligned_cols=87 Identities=17% Similarity=0.197 Sum_probs=59.0
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCccChHHHHHHHHHHcCCCCCcc---CCCCHHHHHHHH
Q 002538 176 SAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDLQIEKNQEIIGKKIGLFDDSW---KNKNLDERALEI 252 (911)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 252 (911)
..+++-|+|.+|+||||||.+++... ...-..++|+.....++. ..+++++...+.. ...+.++....+
T Consensus 59 ~GsiteI~G~~GsGKTtLal~~~~~a---~~~G~~v~yId~E~t~~~-----~~A~~lGvDl~~llv~~~~~~E~~l~~i 130 (790)
T PRK09519 59 RGRVIEIYGPESSGKTTVALHAVANA---QAAGGVAAFIDAEHALDP-----DYAKKLGVDTDSLLVSQPDTGEQALEIA 130 (790)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HHcCCcEEEECCccchhH-----HHHHHcCCChhHeEEecCCCHHHHHHHH
Confidence 46789999999999999998876654 233466899987777764 3667776643321 233445555555
Q ss_pred HHHhhc-ceEEEEEccccc
Q 002538 253 FKILRE-KKFVLLLDDIWE 270 (911)
Q Consensus 253 ~~~L~~-k~~LlVlDdv~~ 270 (911)
...++. +--|||+|-+-.
T Consensus 131 ~~lv~~~~~~LVVIDSI~a 149 (790)
T PRK09519 131 DMLIRSGALDIVVIDSVAA 149 (790)
T ss_pred HHHhhcCCCeEEEEcchhh
Confidence 555544 566899999863
No 360
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=94.31 E-value=0.059 Score=50.18 Aligned_cols=39 Identities=18% Similarity=0.330 Sum_probs=28.7
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCC
Q 002538 178 GIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSK 218 (911)
Q Consensus 178 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~ 218 (911)
++|.|+|..|+|||||++.+.+... +..+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~--~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELK--RRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHH--HTT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHh--HcCCceEEEEEccC
Confidence 5899999999999999999999982 35566555666554
No 361
>PRK04328 hypothetical protein; Provisional
Probab=94.30 E-value=0.14 Score=53.09 Aligned_cols=41 Identities=15% Similarity=0.119 Sum_probs=31.6
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCc
Q 002538 176 SAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKD 219 (911)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~ 219 (911)
.-.++.|.|.+|.|||+||.++.... ...-..++|++....
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~---~~~ge~~lyis~ee~ 62 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNG---LQMGEPGVYVALEEH 62 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH---HhcCCcEEEEEeeCC
Confidence 45799999999999999999876664 133466888887653
No 362
>PRK00625 shikimate kinase; Provisional
Probab=94.29 E-value=0.034 Score=53.87 Aligned_cols=23 Identities=30% Similarity=0.340 Sum_probs=21.0
Q ss_pred EEEEEcCCCChHHHHHHHHHhhh
Q 002538 179 IIGLYGMGGVGKTTLLTRINNKF 201 (911)
Q Consensus 179 vi~I~G~gGiGKTtLa~~v~~~~ 201 (911)
.|.++||+|+||||+++.+.+..
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l 24 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFL 24 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998876
No 363
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=94.25 E-value=0.051 Score=51.09 Aligned_cols=36 Identities=28% Similarity=0.256 Sum_probs=27.0
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEE
Q 002538 177 AGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVV 215 (911)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~ 215 (911)
..||-|.|.+|.||||||+++.+.. ...-..+.++.
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L---~~~g~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRL---FARGIKVYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHH---HHTTS-EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH---HHcCCcEEEec
Confidence 3589999999999999999999987 23334455553
No 364
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=94.24 E-value=0.25 Score=53.34 Aligned_cols=58 Identities=17% Similarity=0.289 Sum_probs=41.8
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhhccCC----CCCceEEEEEeCCccChHHHHHHHHHHcCC
Q 002538 176 SAGIIGLYGMGGVGKTTLLTRINNKFLESP----SDFDCVIWVVVSKDLQIEKNQEIIGKKIGL 235 (911)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 235 (911)
...++-|+|.+|+||||++.+++... ... ..-..++||+....++...+. ++++.++.
T Consensus 94 ~g~i~ei~G~~g~GKT~l~~~~~~~~-~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~gl 155 (310)
T TIGR02236 94 TQAITEVFGEFGSGKTQICHQLAVNV-QLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARGL 155 (310)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh-cCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcCC
Confidence 45789999999999999999987764 211 011379999998888877654 34455443
No 365
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=94.24 E-value=0.19 Score=45.05 Aligned_cols=45 Identities=18% Similarity=0.238 Sum_probs=33.7
Q ss_pred cccchHHHHHHHHHHhc----c---CCceEEEEEcCCCChHHHHHHHHHhhh
Q 002538 157 IVKGLESTLEDVWRCLV----E---ESAGIIGLYGMGGVGKTTLLTRINNKF 201 (911)
Q Consensus 157 ~~~Gr~~~~~~l~~~L~----~---~~~~vi~I~G~gGiGKTtLa~~v~~~~ 201 (911)
.++|..-..+.|++.+. . ++.-|++.+|..|+|||.+++.+++..
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 35577666666665554 2 356699999999999999999988873
No 366
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=94.24 E-value=0.24 Score=49.64 Aligned_cols=97 Identities=24% Similarity=0.347 Sum_probs=57.6
Q ss_pred HHHHhcc-CCceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCcc-ChHHHHHHHHHHcCCCC-----Ccc
Q 002538 168 VWRCLVE-ESAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDL-QIEKNQEIIGKKIGLFD-----DSW 240 (911)
Q Consensus 168 l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~-----~~~ 240 (911)
.++.+.. .+-..++|+|..|+|||+|+..+.+.. . -+.++++.+++.. ...++.+.+...-.... ..
T Consensus 5 ~ID~l~Pig~Gqr~~I~g~~g~GKt~Ll~~i~~~~---~--~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t- 78 (215)
T PF00006_consen 5 AIDLLFPIGRGQRIGIFGGAGVGKTVLLQEIANNQ---D--ADVVVYALIGERGREVTEFIEELKGEGALERTVVVAAT- 78 (215)
T ss_dssp HHHHHSCEETTSEEEEEESTTSSHHHHHHHHHHHC---T--TTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEE-
T ss_pred eeccccccccCCEEEEEcCcccccchhhHHHHhcc---c--ccceeeeeccccchhHHHHHHHHhhccccccccccccc-
Confidence 3445543 345788999999999999999999886 1 3444777777653 45556666643311100 00
Q ss_pred CCCCHHH------HHHHHHHHh--hcceEEEEEccccc
Q 002538 241 KNKNLDE------RALEIFKIL--REKKFVLLLDDIWE 270 (911)
Q Consensus 241 ~~~~~~~------~~~~l~~~L--~~k~~LlVlDdv~~ 270 (911)
....... ..-.+.+++ +++.+|+++||+-.
T Consensus 79 ~~~~~~~r~~~~~~a~t~AEyfrd~G~dVlli~Dsltr 116 (215)
T PF00006_consen 79 SDEPPAARYRAPYTALTIAEYFRDQGKDVLLIIDSLTR 116 (215)
T ss_dssp TTS-HHHHHHHHHHHHHHHHHHHHTTSEEEEEEETHHH
T ss_pred chhhHHHHhhhhccchhhhHHHhhcCCceeehhhhhHH
Confidence 1111111 112233333 68999999999843
No 367
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.23 E-value=0.21 Score=58.52 Aligned_cols=173 Identities=18% Similarity=0.229 Sum_probs=96.4
Q ss_pred ccchHHHHHHH---HHHhccC---------CceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCccChHHH
Q 002538 158 VKGLESTLEDV---WRCLVEE---------SAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDLQIEKN 225 (911)
Q Consensus 158 ~~Gr~~~~~~l---~~~L~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~ 225 (911)
|.|-|+.+++| ++.|..+ -.+-+-++|++|.|||-||++++.+. . +=++++|..
T Consensus 313 VAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEA-g-------VPF~svSGS------ 378 (774)
T KOG0731|consen 313 VAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEA-G-------VPFFSVSGS------ 378 (774)
T ss_pred ccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhccc-C-------CceeeechH------
Confidence 56777655554 5555542 24568899999999999999999987 2 223333332
Q ss_pred HHHHHHHcCCCCCccCCCCHHHHHHHHHHHh-hcceEEEEEcccccccc-----------------cccccCCCCCCCCC
Q 002538 226 QEIIGKKIGLFDDSWKNKNLDERALEIFKIL-REKKFVLLLDDIWERVN-----------------LNKVGVPLPSPQST 287 (911)
Q Consensus 226 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L-~~k~~LlVlDdv~~~~~-----------------~~~~~~~l~~~~~~ 287 (911)
+..+.+...+ ..++..+...- ...+.++.+|+++...- +.++..........
T Consensus 379 --EFvE~~~g~~--------asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~ 448 (774)
T KOG0731|consen 379 --EFVEMFVGVG--------ASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETS 448 (774)
T ss_pred --HHHHHhcccc--------hHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCC
Confidence 1111111100 12223333332 24567889998864311 11111111100111
Q ss_pred CCcEEEEEcCchhhhhc--c---CCcceEEccCCCHHHHHHHHHHHhCCcccCCCccHHHHHHHHHHHhCCcchH
Q 002538 288 TASKVVFTTRFINVCGS--M---EAHRNFKVECLTEKHAWELFQMKVGEETLKSHPHVFELAQVVAKECGGLPLA 357 (911)
Q Consensus 288 ~gs~IivTtR~~~v~~~--~---~~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~GlPLa 357 (911)
.+--++-+|...++... + .-++.+.++.-+...-.++|.-++..... ..+..++++ |+...-|.+=|
T Consensus 449 ~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~--~~e~~dl~~-~a~~t~gf~ga 520 (774)
T KOG0731|consen 449 KGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKL--DDEDVDLSK-LASLTPGFSGA 520 (774)
T ss_pred CcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCC--CcchhhHHH-HHhcCCCCcHH
Confidence 22223336766666432 1 23567888888888999999998865442 244566777 88888887644
No 368
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=94.23 E-value=0.21 Score=54.00 Aligned_cols=59 Identities=17% Similarity=0.234 Sum_probs=42.8
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhhccC---C-CCCceEEEEEeCCccChHHHHHHHHHHcCCC
Q 002538 176 SAGIIGLYGMGGVGKTTLLTRINNKFLES---P-SDFDCVIWVVVSKDLQIEKNQEIIGKKIGLF 236 (911)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~-~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~ 236 (911)
...++-|+|.+|+|||++|..++-.. .. . ..-..++|++....|..+.+. +|++.++..
T Consensus 122 ~g~i~~i~G~~g~GKT~l~~~l~~~~-~~~~~~gg~~g~vlyIdtE~~f~~eRl~-qia~~~~~~ 184 (342)
T PLN03186 122 TGSITEIYGEFRTGKTQLCHTLCVTC-QLPLDQGGGEGKAMYIDTEGTFRPQRLI-QIAERFGLN 184 (342)
T ss_pred CceEEEEECCCCCCccHHHHHHHHHh-hcchhhCCCCceEEEEECCCCccHHHHH-HHHHHcCCC
Confidence 45788899999999999998877543 11 1 122379999999999887764 556666543
No 369
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=94.22 E-value=0.069 Score=48.56 Aligned_cols=72 Identities=19% Similarity=0.140 Sum_probs=43.1
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCccChHHHHHHHHHHcCCCCCccCCCCHHHHHHHHHHHh
Q 002538 177 AGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDLQIEKNQEIIGKKIGLFDDSWKNKNLDERALEIFKIL 256 (911)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L 256 (911)
.+-|.|.|.+|+||||+|..++... . .-|+++|+-.....++...=+.... ..-+.+.+...|...+
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~-----~---~~~i~isd~vkEn~l~~gyDE~y~c-----~i~DEdkv~D~Le~~m 73 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKT-----G---LEYIEISDLVKENNLYEGYDEEYKC-----HILDEDKVLDELEPLM 73 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHh-----C---CceEehhhHHhhhcchhcccccccC-----ccccHHHHHHHHHHHH
Confidence 4568899999999999999998654 1 2366666543333333322222211 2345566666676666
Q ss_pred hcceE
Q 002538 257 REKKF 261 (911)
Q Consensus 257 ~~k~~ 261 (911)
.+..+
T Consensus 74 ~~Gg~ 78 (176)
T KOG3347|consen 74 IEGGN 78 (176)
T ss_pred hcCCc
Confidence 55443
No 370
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=94.21 E-value=0.14 Score=50.53 Aligned_cols=44 Identities=25% Similarity=0.151 Sum_probs=30.9
Q ss_pred EEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCccChHHHHHH
Q 002538 180 IGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDLQIEKNQEI 228 (911)
Q Consensus 180 i~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 228 (911)
+.|.|.+|+|||++|.++..... +.-..++|++... +...+.+.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~---~~g~~v~~~s~e~--~~~~~~~~ 45 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGL---ARGEPGLYVTLEE--SPEELIEN 45 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH---HCCCcEEEEECCC--CHHHHHHH
Confidence 67899999999999999877752 2335678887654 34444433
No 371
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=94.19 E-value=0.1 Score=56.93 Aligned_cols=47 Identities=26% Similarity=0.311 Sum_probs=37.7
Q ss_pred cccccchHHHHHHHHHHhcc---------C-----CceEEEEEcCCCChHHHHHHHHHhhh
Q 002538 155 EAIVKGLESTLEDVWRCLVE---------E-----SAGIIGLYGMGGVGKTTLLTRINNKF 201 (911)
Q Consensus 155 ~~~~~Gr~~~~~~l~~~L~~---------~-----~~~vi~I~G~gGiGKTtLa~~v~~~~ 201 (911)
+..|+|.+..++.+..++.. . ..+.|.++|++|+||||+|+.+....
T Consensus 14 d~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l 74 (443)
T PRK05201 14 DKYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (443)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 34577999999888777742 0 13678999999999999999998886
No 372
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=94.18 E-value=0.13 Score=48.60 Aligned_cols=23 Identities=35% Similarity=0.652 Sum_probs=21.1
Q ss_pred EEEEEcCCCChHHHHHHHHHhhh
Q 002538 179 IIGLYGMGGVGKTTLLTRINNKF 201 (911)
Q Consensus 179 vi~I~G~gGiGKTtLa~~v~~~~ 201 (911)
||.|+|.+|+||||+|+.+....
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l 23 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKL 23 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999998876
No 373
>PRK05439 pantothenate kinase; Provisional
Probab=94.17 E-value=0.34 Score=51.44 Aligned_cols=83 Identities=16% Similarity=0.023 Sum_probs=44.4
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCccChHHHHHHHHHHcCCCCCccCCCCHHHHHHHHHH
Q 002538 175 ESAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDLQIEKNQEIIGKKIGLFDDSWKNKNLDERALEIFK 254 (911)
Q Consensus 175 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 254 (911)
...-+|+|.|.+|+||||+|+.+.... .....-..+.-++...-......+.. ..+....+....-+.+.+...|..
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l-~~~~~~~~v~vi~~DdFy~~~~~l~~--~~l~~~kg~Pes~D~~~l~~~L~~ 160 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALL-SRWPEHPKVELVTTDGFLYPNAVLEE--RGLMKRKGFPESYDMRALLRFLSD 160 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH-HhhCCCCceEEEeccccccCHHHHhh--hhccccCCCcccccHHHHHHHHHH
Confidence 356699999999999999999988765 11111123333443332222222221 111111111234466666666666
Q ss_pred Hhhcce
Q 002538 255 ILREKK 260 (911)
Q Consensus 255 ~L~~k~ 260 (911)
...|+.
T Consensus 161 Lk~G~~ 166 (311)
T PRK05439 161 VKSGKP 166 (311)
T ss_pred HHcCCC
Confidence 666664
No 374
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=94.16 E-value=0.19 Score=55.65 Aligned_cols=92 Identities=23% Similarity=0.240 Sum_probs=52.2
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCccChHHHHHHHHHHcCCCC-----CccCCCCHHH--
Q 002538 175 ESAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDLQIEKNQEIIGKKIGLFD-----DSWKNKNLDE-- 247 (911)
Q Consensus 175 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~-- 247 (911)
.+-..++|+|..|+|||||++.+.... .....++....-+.-...++.+..+..-++.. ...+......
T Consensus 138 ~~Gq~i~I~G~sG~GKTtLl~~I~~~~----~~~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~ 213 (418)
T TIGR03498 138 CRGQRLGIFAGSGVGKSTLLSMLARNT----DADVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQ 213 (418)
T ss_pred cCCcEEEEECCCCCChHHHHHHHhCCC----CCCEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHH
Confidence 355689999999999999999888765 12223333333333344555554443322211 0111111111
Q ss_pred ---HHHHHHHHh--hcceEEEEEccccc
Q 002538 248 ---RALEIFKIL--REKKFVLLLDDIWE 270 (911)
Q Consensus 248 ---~~~~l~~~L--~~k~~LlVlDdv~~ 270 (911)
....+.+++ +++++|+++||+-.
T Consensus 214 a~~~a~~iAEyfrd~G~~Vll~~DslTr 241 (418)
T TIGR03498 214 AAYTATAIAEYFRDQGKDVLLLMDSVTR 241 (418)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeccchhH
Confidence 223355555 57899999999854
No 375
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=94.16 E-value=0.22 Score=52.04 Aligned_cols=40 Identities=20% Similarity=0.334 Sum_probs=30.9
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCC
Q 002538 176 SAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSK 218 (911)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~ 218 (911)
.-+++.|.|.+|+||||+|.+++.... ..-..+++++...
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a---~~Ge~vlyis~Ee 74 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQA---SRGNPVLFVTVES 74 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH---hCCCcEEEEEecC
Confidence 457999999999999999999866641 2245678888764
No 376
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=94.15 E-value=0.17 Score=51.86 Aligned_cols=97 Identities=11% Similarity=0.125 Sum_probs=58.6
Q ss_pred ccccchHHHHHHHHHHhcc-------CCceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCccChHHHHHH
Q 002538 156 AIVKGLESTLEDVWRCLVE-------ESAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDLQIEKNQEI 228 (911)
Q Consensus 156 ~~~~Gr~~~~~~l~~~L~~-------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 228 (911)
..++|..-.++.|+..+.. .+.=+++.+|..|+||.-.++.+++...+..-.-+ ....
T Consensus 82 ~~lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~---------------~V~~ 146 (344)
T KOG2170|consen 82 RALFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSP---------------FVHH 146 (344)
T ss_pred HHhhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhccccch---------------hHHH
Confidence 3456877777777776653 25569999999999999999999988622111111 1112
Q ss_pred HHHHcCCCCCccCCCCHHHHHHHHHHHhh-----cceEEEEEcccccc
Q 002538 229 IGKKIGLFDDSWKNKNLDERALEIFKILR-----EKKFVLLLDDIWER 271 (911)
Q Consensus 229 i~~~l~~~~~~~~~~~~~~~~~~l~~~L~-----~k~~LlVlDdv~~~ 271 (911)
......-+ .....+.-..+|+.+++ -+|-|+|+|+++..
T Consensus 147 fvat~hFP----~~~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKm 190 (344)
T KOG2170|consen 147 FVATLHFP----HASKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKL 190 (344)
T ss_pred hhhhccCC----ChHHHHHHHHHHHHHHHHHHHhcCCceEEechhhhc
Confidence 22222222 22233444444444443 37899999999864
No 377
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=94.13 E-value=0.33 Score=49.10 Aligned_cols=205 Identities=13% Similarity=0.142 Sum_probs=112.6
Q ss_pred ccchHHHHHHHHHHhccCCceEEEEEcCCCChHHHHHHHHHhhhcc---CCCCCceEEEEEeCCc----------c----
Q 002538 158 VKGLESTLEDVWRCLVEESAGIIGLYGMGGVGKTTLLTRINNKFLE---SPSDFDCVIWVVVSKD----------L---- 220 (911)
Q Consensus 158 ~~Gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~---~~~~f~~~~wv~~s~~----------~---- 220 (911)
+.+.++....+......++.+.+-++|++|.||-|.+..+.+..-. .+-.-+..-|.+.|.. .
T Consensus 15 l~~~~e~~~~Lksl~~~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlEi 94 (351)
T KOG2035|consen 15 LIYHEELANLLKSLSSTGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLEI 94 (351)
T ss_pred cccHHHHHHHHHHhcccCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceEEe
Confidence 4477777777777777678899999999999999988887776411 1123345556544432 1
Q ss_pred -------ChHHHHHHHHHHcCCCCCccCCCCHHHHHHHHHHHhh-cceE-EEEEcccccc--cccccccCCCCCCCCCCC
Q 002538 221 -------QIEKNQEIIGKKIGLFDDSWKNKNLDERALEIFKILR-EKKF-VLLLDDIWER--VNLNKVGVPLPSPQSTTA 289 (911)
Q Consensus 221 -------~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~-~k~~-LlVlDdv~~~--~~~~~~~~~l~~~~~~~g 289 (911)
.-+.+.++++++..-... -..+ .+.| ++|+-.+++. +....+..... .-.+.
T Consensus 95 tPSDaG~~DRvViQellKevAQt~q---------------ie~~~qr~fKvvvi~ead~LT~dAQ~aLRRTME--kYs~~ 157 (351)
T KOG2035|consen 95 TPSDAGNYDRVVIQELLKEVAQTQQ---------------IETQGQRPFKVVVINEADELTRDAQHALRRTME--KYSSN 157 (351)
T ss_pred ChhhcCcccHHHHHHHHHHHHhhcc---------------hhhccccceEEEEEechHhhhHHHHHHHHHHHH--HHhcC
Confidence 011122222222211000 0011 2344 5666666542 11111111111 12345
Q ss_pred cEEEEE----cCchhhhhccCCcceEEccCCCHHHHHHHHHHHhCCcccCCCccHHHHHHHHHHHhCCcc-hHHHHHHhh
Q 002538 290 SKVVFT----TRFINVCGSMEAHRNFKVECLTEKHAWELFQMKVGEETLKSHPHVFELAQVVAKECGGLP-LALITIGRA 364 (911)
Q Consensus 290 s~IivT----tR~~~v~~~~~~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~GlP-Lai~~~g~~ 364 (911)
+|+|+. ||--+-.. +..-.+++...+++|--..+++.+-.....-+ .+++++|+++++|.- -|+-++-..
T Consensus 158 ~RlIl~cns~SriIepIr--SRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp---~~~l~rIa~kS~~nLRrAllmlE~~ 232 (351)
T KOG2035|consen 158 CRLILVCNSTSRIIEPIR--SRCLFIRVPAPSDEEITSVLSKVLKKEGLQLP---KELLKRIAEKSNRNLRRALLMLEAV 232 (351)
T ss_pred ceEEEEecCcccchhHHh--hheeEEeCCCCCHHHHHHHHHHHHHHhcccCc---HHHHHHHHHHhcccHHHHHHHHHHH
Confidence 666663 22111111 12235688899999999999888765543222 689999999999864 355444322
Q ss_pred hccC---------CCHHHHHHHHHHHHhc
Q 002538 365 MAYK---------KTREEWKYAIEVLRRS 384 (911)
Q Consensus 365 l~~~---------~~~~~w~~~~~~l~~~ 384 (911)
--.+ -...+|+-++.++...
T Consensus 233 ~~~n~~~~a~~~~i~~~dWe~~i~e~a~~ 261 (351)
T KOG2035|consen 233 RVNNEPFTANSQVIPKPDWEIYIQEIARV 261 (351)
T ss_pred HhccccccccCCCCCCccHHHHHHHHHHH
Confidence 1111 2456899888776654
No 378
>PRK08149 ATP synthase SpaL; Validated
Probab=94.13 E-value=0.19 Score=55.59 Aligned_cols=91 Identities=14% Similarity=0.225 Sum_probs=53.7
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCc-cChHHHHHHHHHHcCCCC-----CccCCCCH---
Q 002538 175 ESAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKD-LQIEKNQEIIGKKIGLFD-----DSWKNKNL--- 245 (911)
Q Consensus 175 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~-----~~~~~~~~--- 245 (911)
.+-..++|+|..|+|||||++.+++.. .-+.++...+... -+...+.+.......... ...+....
T Consensus 149 ~~Gq~i~I~G~sG~GKTTLl~~i~~~~-----~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~ 223 (428)
T PRK08149 149 GVGQRMGIFASAGCGKTSLMNMLIEHS-----EADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRC 223 (428)
T ss_pred ecCCEEEEECCCCCChhHHHHHHhcCC-----CCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHH
Confidence 356789999999999999999998754 1233334444433 345555555555332211 01111111
Q ss_pred --HHHHHHHHHHh--hcceEEEEEccccc
Q 002538 246 --DERALEIFKIL--REKKFVLLLDDIWE 270 (911)
Q Consensus 246 --~~~~~~l~~~L--~~k~~LlVlDdv~~ 270 (911)
......+.+++ ++|++||++||+-.
T Consensus 224 ~a~~~a~tiAE~fr~~G~~Vll~~DslTr 252 (428)
T PRK08149 224 NAALVATTVAEYFRDQGKRVVLFIDSMTR 252 (428)
T ss_pred hHHHHHHHHHHHHHHcCCCEEEEccchHH
Confidence 12233445555 58999999999954
No 379
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=94.13 E-value=0.091 Score=54.88 Aligned_cols=103 Identities=24% Similarity=0.263 Sum_probs=58.3
Q ss_pred chHHHHHHHHHHhccCCceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCccChHHHHHHHHHHcCCCCCc
Q 002538 160 GLESTLEDVWRCLVEESAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDLQIEKNQEIIGKKIGLFDDS 239 (911)
Q Consensus 160 Gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~ 239 (911)
|...+..+.+..+......+|.|.|..|.||||+++.+.+.. ...-..++.+.-........ ..++...
T Consensus 63 g~~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l~all~~i---~~~~~~iitiEdp~E~~~~~-----~~q~~v~--- 131 (264)
T cd01129 63 GLKPENLEIFRKLLEKPHGIILVTGPTGSGKTTTLYSALSEL---NTPEKNIITVEDPVEYQIPG-----INQVQVN--- 131 (264)
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHhhh---CCCCCeEEEECCCceecCCC-----ceEEEeC---
Confidence 554444444444444556789999999999999999887765 11112233332222111110 0111111
Q ss_pred cCCCCHHHHHHHHHHHhhcceEEEEEcccccccccc
Q 002538 240 WKNKNLDERALEIFKILREKKFVLLLDDIWERVNLN 275 (911)
Q Consensus 240 ~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~~~~ 275 (911)
..........+...|+...=.|+++++.+.+...
T Consensus 132 --~~~~~~~~~~l~~~lR~~PD~i~vgEiR~~e~a~ 165 (264)
T cd01129 132 --EKAGLTFARGLRAILRQDPDIIMVGEIRDAETAE 165 (264)
T ss_pred --CcCCcCHHHHHHHHhccCCCEEEeccCCCHHHHH
Confidence 1111134566677788888899999998876544
No 380
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=94.12 E-value=0.1 Score=50.98 Aligned_cols=23 Identities=35% Similarity=0.768 Sum_probs=21.5
Q ss_pred EEEEEcCCCChHHHHHHHHHhhh
Q 002538 179 IIGLYGMGGVGKTTLLTRINNKF 201 (911)
Q Consensus 179 vi~I~G~gGiGKTtLa~~v~~~~ 201 (911)
+|+|.|.+|+||||+|+.+....
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l 23 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQL 23 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999886
No 381
>PRK04040 adenylate kinase; Provisional
Probab=94.12 E-value=0.042 Score=54.14 Aligned_cols=24 Identities=38% Similarity=0.617 Sum_probs=22.4
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhh
Q 002538 178 GIIGLYGMGGVGKTTLLTRINNKF 201 (911)
Q Consensus 178 ~vi~I~G~gGiGKTtLa~~v~~~~ 201 (911)
.+|+|+|++|+||||+++.+.+..
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l 26 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKL 26 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHh
Confidence 589999999999999999998886
No 382
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=94.08 E-value=0.036 Score=49.05 Aligned_cols=22 Identities=36% Similarity=0.694 Sum_probs=19.9
Q ss_pred EEEEcCCCChHHHHHHHHHhhh
Q 002538 180 IGLYGMGGVGKTTLLTRINNKF 201 (911)
Q Consensus 180 i~I~G~gGiGKTtLa~~v~~~~ 201 (911)
|-|+|.+|+|||++|+.++.+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l 22 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDL 22 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999988876
No 383
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=94.06 E-value=0.037 Score=49.65 Aligned_cols=27 Identities=37% Similarity=0.530 Sum_probs=19.1
Q ss_pred EEEEcCCCChHHHHHHHHHhhhccCCCCCc
Q 002538 180 IGLYGMGGVGKTTLLTRINNKFLESPSDFD 209 (911)
Q Consensus 180 i~I~G~gGiGKTtLa~~v~~~~~~~~~~f~ 209 (911)
|-++|.+|+||||+|+.++... ...|.
T Consensus 2 vLleg~PG~GKT~la~~lA~~~---~~~f~ 28 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSL---GLSFK 28 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHT---T--EE
T ss_pred EeeECCCccHHHHHHHHHHHHc---CCcee
Confidence 5699999999999999999987 55664
No 384
>PRK05973 replicative DNA helicase; Provisional
Probab=94.05 E-value=0.28 Score=49.92 Aligned_cols=49 Identities=12% Similarity=0.110 Sum_probs=34.5
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCccChHHHHHHH
Q 002538 176 SAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDLQIEKNQEII 229 (911)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 229 (911)
...++.|.|.+|+|||++|.++..... ..-..+++++.... ..++.+.+
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~~a---~~Ge~vlyfSlEes--~~~i~~R~ 111 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVEAM---KSGRTGVFFTLEYT--EQDVRDRL 111 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHH---hcCCeEEEEEEeCC--HHHHHHHH
Confidence 456888999999999999999877652 22355777765544 44555444
No 385
>PTZ00185 ATPase alpha subunit; Provisional
Probab=94.04 E-value=0.23 Score=55.35 Aligned_cols=94 Identities=14% Similarity=0.114 Sum_probs=54.9
Q ss_pred CceEEEEEcCCCChHHHHH-HHHHhhhccC-----CCCCceEEEEEeCCccChHHHHHHHHHHcC-CCC-----CccCCC
Q 002538 176 SAGIIGLYGMGGVGKTTLL-TRINNKFLES-----PSDFDCVIWVVVSKDLQIEKNQEIIGKKIG-LFD-----DSWKNK 243 (911)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~-----~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~-~~~-----~~~~~~ 243 (911)
+-..++|.|..|+|||+|| -.+.+.. .+ .++-+.++++.+++......-+...+++-+ +.. ...++.
T Consensus 188 RGQR~lIfGd~GtGKTtLAld~IinQ~-~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep 266 (574)
T PTZ00185 188 RGQRELIVGDRQTGKTSIAVSTIINQV-RINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEP 266 (574)
T ss_pred CCCEEEeecCCCCChHHHHHHHHHhhh-hhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCC
Confidence 5568899999999999997 5566654 11 134567888888887644332333333333 111 001111
Q ss_pred CHHH-----HHHHHHHHh--hcceEEEEEccccc
Q 002538 244 NLDE-----RALEIFKIL--REKKFVLLLDDIWE 270 (911)
Q Consensus 244 ~~~~-----~~~~l~~~L--~~k~~LlVlDdv~~ 270 (911)
.... ....+.+++ +++.+|+|+||+-.
T Consensus 267 ~~~r~~Apy~a~tiAEYFrd~GkdVLiv~DDLTr 300 (574)
T PTZ00185 267 AGLQYLAPYSGVTMGEYFMNRGRHCLCVYDDLSK 300 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEEEcCchH
Confidence 1111 122344444 57999999999854
No 386
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=94.03 E-value=0.2 Score=53.57 Aligned_cols=91 Identities=22% Similarity=0.253 Sum_probs=52.3
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCC-ccChHHHHHHHHHHcCCCC-----CccCCCCHH--
Q 002538 175 ESAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSK-DLQIEKNQEIIGKKIGLFD-----DSWKNKNLD-- 246 (911)
Q Consensus 175 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~-- 246 (911)
.....++|+|..|.|||||.+.+.+.. . -+..+..-+.. .-+...........-++.. ...+.....
T Consensus 67 ~~Gqri~I~G~sG~GKTtLl~~Ia~~~-~----~~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~ 141 (326)
T cd01136 67 GKGQRLGIFAGSGVGKSTLLGMIARGT-T----ADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRV 141 (326)
T ss_pred cCCcEEEEECCCCCChHHHHHHHhCCC-C----CCEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHH
Confidence 355689999999999999999988765 1 23334444443 3345555555544322211 011111111
Q ss_pred ---HHHHHHHHHh--hcceEEEEEccccc
Q 002538 247 ---ERALEIFKIL--REKKFVLLLDDIWE 270 (911)
Q Consensus 247 ---~~~~~l~~~L--~~k~~LlVlDdv~~ 270 (911)
.....+.+++ ++|.+|+++||+-.
T Consensus 142 ~~~~~a~~~AEyfr~~g~~Vll~~Dsltr 170 (326)
T cd01136 142 KAAYTATAIAEYFRDQGKDVLLLMDSLTR 170 (326)
T ss_pred HHHHHHHHHHHHHHHcCCCeEEEeccchH
Confidence 1222344444 58999999999854
No 387
>PRK06217 hypothetical protein; Validated
Probab=94.02 E-value=0.043 Score=54.07 Aligned_cols=23 Identities=30% Similarity=0.471 Sum_probs=21.4
Q ss_pred EEEEEcCCCChHHHHHHHHHhhh
Q 002538 179 IIGLYGMGGVGKTTLLTRINNKF 201 (911)
Q Consensus 179 vi~I~G~gGiGKTtLa~~v~~~~ 201 (911)
.|.|.|.+|.||||+|+++.+..
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 58899999999999999999886
No 388
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.01 E-value=0.1 Score=50.90 Aligned_cols=117 Identities=20% Similarity=0.250 Sum_probs=61.4
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCccChHHHHHHHHHHcCC-CCC--ccCC---------C
Q 002538 176 SAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDLQIEKNQEIIGKKIGL-FDD--SWKN---------K 243 (911)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~-~~~--~~~~---------~ 243 (911)
.-.+++|+|..|.|||||++.++... ......+++......+.. ..+...++. ..+ .... .
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~----~~~~G~i~~~g~~~~~~~---~~~~~~i~~~~q~~~~~~~~tv~~~~~LS 97 (173)
T cd03230 25 KGEIYGLLGPNGAGKTTLIKIILGLL----KPDSGEIKVLGKDIKKEP---EEVKRRIGYLPEEPSLYENLTVRENLKLS 97 (173)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC----CCCCeEEEECCEEcccch---HhhhccEEEEecCCccccCCcHHHHhhcC
Confidence 45699999999999999999998865 122344444211100000 111111111 000 0011 1
Q ss_pred CHHHHHHHHHHHhhcceEEEEEcccccccc------cccccCCCCCCCCCCCcEEEEEcCchhhhh
Q 002538 244 NLDERALEIFKILREKKFVLLLDDIWERVN------LNKVGVPLPSPQSTTASKVVFTTRFINVCG 303 (911)
Q Consensus 244 ~~~~~~~~l~~~L~~k~~LlVlDdv~~~~~------~~~~~~~l~~~~~~~gs~IivTtR~~~v~~ 303 (911)
.-+...-.+...+..++=++++|+.-..-| ..++...+. ..|..||++|.+.....
T Consensus 98 ~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~----~~g~tiii~th~~~~~~ 159 (173)
T cd03230 98 GGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELK----KEGKTILLSSHILEEAE 159 (173)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHH----HCCCEEEEECCCHHHHH
Confidence 112233346667778889999999854322 112211221 12567888888777654
No 389
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=94.00 E-value=0.089 Score=51.99 Aligned_cols=43 Identities=33% Similarity=0.499 Sum_probs=29.8
Q ss_pred EEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCccChH
Q 002538 179 IIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDLQIE 223 (911)
Q Consensus 179 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 223 (911)
.|+|+|-||+||||+|..+..... .++.| .++-|....++++.
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~-~~~~~-~VLvVDaDpd~nL~ 44 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLL-SKGGY-NVLVVDADPDSNLP 44 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHH-hcCCc-eEEEEeCCCCCChH
Confidence 689999999999999999766662 22223 35556655555543
No 390
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=93.99 E-value=0.17 Score=54.44 Aligned_cols=22 Identities=27% Similarity=0.443 Sum_probs=20.1
Q ss_pred EEEEcCCCChHHHHHHHHHhhh
Q 002538 180 IGLYGMGGVGKTTLLTRINNKF 201 (911)
Q Consensus 180 i~I~G~gGiGKTtLa~~v~~~~ 201 (911)
+.+.|++|.||||+++.+.+..
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l 23 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATL 23 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHH
Confidence 5789999999999999999876
No 391
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=93.99 E-value=0.24 Score=51.23 Aligned_cols=97 Identities=12% Similarity=0.139 Sum_probs=54.7
Q ss_pred CceEEEEEcCCCChHHHHH-HHHHhhhccCCCCCceE-EEEEeCCcc-ChHHHHHHHHHHcCCCC-----CccCCCCHHH
Q 002538 176 SAGIIGLYGMGGVGKTTLL-TRINNKFLESPSDFDCV-IWVVVSKDL-QIEKNQEIIGKKIGLFD-----DSWKNKNLDE 247 (911)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~~f~~~-~wv~~s~~~-~~~~~~~~i~~~l~~~~-----~~~~~~~~~~ 247 (911)
+-..++|+|..|+|||+|| ..+.+.. .-+.+ +++-+++.. ...++.+.+.+.-.+.. ...+......
T Consensus 68 rGQr~~Ifg~~g~GKt~L~l~~i~~~~-----~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r 142 (274)
T cd01132 68 RGQRELIIGDRQTGKTAIAIDTIINQK-----GKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQ 142 (274)
T ss_pred cCCEEEeeCCCCCCccHHHHHHHHHhc-----CCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHH
Confidence 5578999999999999996 5565542 22333 666666553 45566666654322111 0111111111
Q ss_pred -----HHHHHHHHh--hcceEEEEEcccccc-cccccc
Q 002538 248 -----RALEIFKIL--REKKFVLLLDDIWER-VNLNKV 277 (911)
Q Consensus 248 -----~~~~l~~~L--~~k~~LlVlDdv~~~-~~~~~~ 277 (911)
..-.+.+++ +++.+|||+||+-.. ..+.++
T Consensus 143 ~~a~~~a~aiAE~fr~~G~~Vlvl~DslTr~A~A~rEi 180 (274)
T cd01132 143 YLAPYTGCAMGEYFMDNGKHALIIYDDLSKQAVAYRQM 180 (274)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEcChHHHHHHHHHH
Confidence 123344444 579999999999653 334444
No 392
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=93.97 E-value=0.11 Score=57.43 Aligned_cols=38 Identities=21% Similarity=0.280 Sum_probs=31.6
Q ss_pred HHHHHHHHhccCCceEEEEEcCCCChHHHHHHHHHhhh
Q 002538 164 TLEDVWRCLVEESAGIIGLYGMGGVGKTTLLTRINNKF 201 (911)
Q Consensus 164 ~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 201 (911)
..+.+++.+.......+.|.|.||.|||++.+++.+..
T Consensus 9 ~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~ 46 (364)
T PF05970_consen 9 VFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYL 46 (364)
T ss_pred HHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHh
Confidence 34566666666677889999999999999999999887
No 393
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.95 E-value=0.17 Score=56.61 Aligned_cols=87 Identities=23% Similarity=0.279 Sum_probs=47.9
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCcc-ChHHHHHHHHHHcCCCCCccCCCCHHHHHHHHHHH
Q 002538 177 AGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDL-QIEKNQEIIGKKIGLFDDSWKNKNLDERALEIFKI 255 (911)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 255 (911)
.++++++|++|+||||++..++... .....-..+..|+....- ....-+...++.++.+.. ...+..+....+.+
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~-~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~--~~~~~~~l~~~l~~- 296 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARY-ALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVE--VVYDPKELAKALEQ- 296 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH-HHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceE--ccCCHHhHHHHHHH-
Confidence 4699999999999999999888776 201223456666543211 112223334444544321 12233444444433
Q ss_pred hhcceEEEEEccc
Q 002538 256 LREKKFVLLLDDI 268 (911)
Q Consensus 256 L~~k~~LlVlDdv 268 (911)
+. ..=+||+|..
T Consensus 297 ~~-~~DlVlIDt~ 308 (424)
T PRK05703 297 LR-DCDVILIDTA 308 (424)
T ss_pred hC-CCCEEEEeCC
Confidence 22 3457888866
No 394
>PRK05922 type III secretion system ATPase; Validated
Probab=93.94 E-value=0.14 Score=56.73 Aligned_cols=91 Identities=13% Similarity=0.233 Sum_probs=51.9
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCC-ccChHHHHHHHHHHcCCCCC-----ccCCCCHH--
Q 002538 175 ESAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSK-DLQIEKNQEIIGKKIGLFDD-----SWKNKNLD-- 246 (911)
Q Consensus 175 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~-- 246 (911)
.+-..++|+|..|+|||||.+.+.+.. . .+....+.++. .......+.+.......... ..+.....
T Consensus 155 ~~GqrigI~G~nG~GKSTLL~~Ia~~~----~-~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~ 229 (434)
T PRK05922 155 GKGQRIGVFSEPGSGKSSLLSTIAKGS----K-STINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKV 229 (434)
T ss_pred cCCcEEEEECCCCCChHHHHHHHhccC----C-CCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHH
Confidence 455679999999999999999998764 1 23333333333 23334445444433322110 00111111
Q ss_pred ---HHHHHHHHHh--hcceEEEEEccccc
Q 002538 247 ---ERALEIFKIL--REKKFVLLLDDIWE 270 (911)
Q Consensus 247 ---~~~~~l~~~L--~~k~~LlVlDdv~~ 270 (911)
.....+.+++ +++++|+++||+-.
T Consensus 230 ~a~~~a~tiAEyfrd~G~~VLl~~DslTR 258 (434)
T PRK05922 230 IAGRAAMTIAEYFRDQGHRVLFIMDSLSR 258 (434)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEeccchhH
Confidence 2233355555 58999999999954
No 395
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=93.93 E-value=0.18 Score=55.72 Aligned_cols=47 Identities=26% Similarity=0.223 Sum_probs=36.1
Q ss_pred cccccchHHHHHHHHHHhc-------c----C-------CceEEEEEcCCCChHHHHHHHHHhhh
Q 002538 155 EAIVKGLESTLEDVWRCLV-------E----E-------SAGIIGLYGMGGVGKTTLLTRINNKF 201 (911)
Q Consensus 155 ~~~~~Gr~~~~~~l~~~L~-------~----~-------~~~vi~I~G~gGiGKTtLa~~v~~~~ 201 (911)
+..|+|.++.++.+...+. . . ....|.++|++|+|||++|+.++...
T Consensus 76 ~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l 140 (413)
T TIGR00382 76 DEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARIL 140 (413)
T ss_pred cceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhc
Confidence 4557899999988865551 1 1 12478899999999999999998765
No 396
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=93.92 E-value=0.18 Score=55.94 Aligned_cols=91 Identities=18% Similarity=0.218 Sum_probs=53.5
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCcc-ChHHHHHHHHHHcCCCC-----CccCCCCHH--
Q 002538 175 ESAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDL-QIEKNQEIIGKKIGLFD-----DSWKNKNLD-- 246 (911)
Q Consensus 175 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~-----~~~~~~~~~-- 246 (911)
.+-..++|+|..|+|||||++++++.. . .+.++.+-+++.. ...+..+..+..-++.. ...+.....
T Consensus 156 ~~Gqri~I~G~sG~GKTtLL~~I~~~~-~----~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~ 230 (442)
T PRK08927 156 CRGQRMGIFAGSGVGKSVLLSMLARNA-D----ADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRR 230 (442)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhcc-C----CCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHH
Confidence 356789999999999999999998765 1 2445556565543 33344444433222211 011111111
Q ss_pred ---HHHHHHHHHh--hcceEEEEEccccc
Q 002538 247 ---ERALEIFKIL--REKKFVLLLDDIWE 270 (911)
Q Consensus 247 ---~~~~~l~~~L--~~k~~LlVlDdv~~ 270 (911)
.....+.+++ +++.+|+++||+-.
T Consensus 231 ~a~~~a~tiAEyfrd~G~~Vll~~DslTr 259 (442)
T PRK08927 231 QAAYLTLAIAEYFRDQGKDVLCLMDSVTR 259 (442)
T ss_pred HHHHHHHHHHHHHHHCCCcEEEEEeCcHH
Confidence 1223345555 58999999999954
No 397
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=93.90 E-value=0.14 Score=56.97 Aligned_cols=94 Identities=24% Similarity=0.338 Sum_probs=59.5
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCcc-ChHHHHHHHHHHcCCCC-----CccCCCCHH--
Q 002538 175 ESAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDL-QIEKNQEIIGKKIGLFD-----DSWKNKNLD-- 246 (911)
Q Consensus 175 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~-----~~~~~~~~~-- 246 (911)
.+-..++|.|..|+|||+|+.++.... . +.+-+.++++-+++.. ...++.+.+...-.+.. ...+.....
T Consensus 136 gkGQr~~Ifg~~G~GKt~l~~~~~~~~-~-~~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~ 213 (449)
T TIGR03305 136 ERGGKAGLFGGAGVGKTVLLTEMIHNM-V-GQHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARF 213 (449)
T ss_pred ccCCEEEeecCCCCChhHHHHHHHHHH-H-hcCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHH
Confidence 356789999999999999999998876 2 2334788888887655 34555665554321111 011111111
Q ss_pred ---HHHHHHHHHhh---cceEEEEEccccc
Q 002538 247 ---ERALEIFKILR---EKKFVLLLDDIWE 270 (911)
Q Consensus 247 ---~~~~~l~~~L~---~k~~LlVlDdv~~ 270 (911)
..+..+.++++ ++++|+++||+-.
T Consensus 214 ~~~~~a~tiAEyfrd~~G~~VLl~~DslTR 243 (449)
T TIGR03305 214 RVGHTALTMAEYFRDDEKQDVLLLIDNIFR 243 (449)
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEecChHH
Confidence 22334566664 6899999999954
No 398
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=93.89 E-value=0.1 Score=47.73 Aligned_cols=26 Identities=31% Similarity=0.350 Sum_probs=23.6
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhh
Q 002538 176 SAGIIGLYGMGGVGKTTLLTRINNKF 201 (911)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 201 (911)
...+|.+.|.-|.||||+++.+++..
T Consensus 21 ~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 21 FGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 45699999999999999999999886
No 399
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=93.88 E-value=0.041 Score=53.86 Aligned_cols=23 Identities=35% Similarity=0.585 Sum_probs=21.2
Q ss_pred EEEEEcCCCChHHHHHHHHHhhh
Q 002538 179 IIGLYGMGGVGKTTLLTRINNKF 201 (911)
Q Consensus 179 vi~I~G~gGiGKTtLa~~v~~~~ 201 (911)
+|+|.|.+|+||||+|+.+....
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998875
No 400
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=93.86 E-value=0.04 Score=54.26 Aligned_cols=23 Identities=30% Similarity=0.462 Sum_probs=21.0
Q ss_pred EEEEEcCCCChHHHHHHHHHhhh
Q 002538 179 IIGLYGMGGVGKTTLLTRINNKF 201 (911)
Q Consensus 179 vi~I~G~gGiGKTtLa~~v~~~~ 201 (911)
||.|+|++|+||||+|+.++...
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58899999999999999998875
No 401
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=93.85 E-value=0.32 Score=49.71 Aligned_cols=49 Identities=22% Similarity=0.304 Sum_probs=32.4
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCccChHHHHHHH
Q 002538 176 SAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDLQIEKNQEII 229 (911)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 229 (911)
...++.|.|..|+||||+|.++..... +.. ..+++++. ..+..++.+.+
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~--~~g-~~~~yi~~--e~~~~~~~~~~ 71 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFL--QNG-YSVSYVST--QLTTTEFIKQM 71 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH--hCC-CcEEEEeC--CCCHHHHHHHH
Confidence 456999999999999999866655441 122 45666663 33455655555
No 402
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=93.84 E-value=2.4 Score=46.33 Aligned_cols=59 Identities=17% Similarity=0.238 Sum_probs=39.4
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEE-eCCccChHHHHHHHHHHcCCCC
Q 002538 176 SAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVV-VSKDLQIEKNQEIIGKKIGLFD 237 (911)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~-~s~~~~~~~~~~~i~~~l~~~~ 237 (911)
...||-.+|.-|.||||-|..+++.. +. +.+. +.-|+ ....+..-+-++.++++.+.+-
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~l-kk-~~~k-vllVaaD~~RpAA~eQL~~La~q~~v~~ 158 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYL-KK-KGKK-VLLVAADTYRPAAIEQLKQLAEQVGVPF 158 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHH-HH-cCCc-eEEEecccCChHHHHHHHHHHHHcCCce
Confidence 35789999999999999999999988 22 2222 22222 2222344456778888887654
No 403
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=93.80 E-value=0.042 Score=54.96 Aligned_cols=23 Identities=43% Similarity=0.661 Sum_probs=20.8
Q ss_pred EEEEEcCCCChHHHHHHHHHhhh
Q 002538 179 IIGLYGMGGVGKTTLLTRINNKF 201 (911)
Q Consensus 179 vi~I~G~gGiGKTtLa~~v~~~~ 201 (911)
+|+|.|.+|+||||+|+.+....
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999997764
No 404
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=93.79 E-value=0.037 Score=53.22 Aligned_cols=24 Identities=33% Similarity=0.498 Sum_probs=21.4
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhh
Q 002538 178 GIIGLYGMGGVGKTTLLTRINNKF 201 (911)
Q Consensus 178 ~vi~I~G~gGiGKTtLa~~v~~~~ 201 (911)
+.|-+.|.+|+||||+|+.+++..
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L 25 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKEL 25 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHH
Confidence 457789999999999999999887
No 405
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=93.75 E-value=0.083 Score=55.14 Aligned_cols=24 Identities=29% Similarity=0.351 Sum_probs=19.6
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhh
Q 002538 178 GIIGLYGMGGVGKTTLLTRINNKF 201 (911)
Q Consensus 178 ~vi~I~G~gGiGKTtLa~~v~~~~ 201 (911)
+.|.|+|.+|+||||+|+.+....
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~ 25 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYL 25 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHH
Confidence 468899999999999999999987
No 406
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=93.75 E-value=0.092 Score=56.62 Aligned_cols=45 Identities=16% Similarity=0.257 Sum_probs=38.5
Q ss_pred cccchHHHHHHHHHHhccCCceEEEEEcCCCChHHHHHHHHHhhh
Q 002538 157 IVKGLESTLEDVWRCLVEESAGIIGLYGMGGVGKTTLLTRINNKF 201 (911)
Q Consensus 157 ~~~Gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 201 (911)
.|+|.++.+..++-.+.+....-+.|.|..|+|||||++.+..-.
T Consensus 5 ~ivgq~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~~~ 49 (337)
T TIGR02030 5 AIVGQDEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAALL 49 (337)
T ss_pred ccccHHHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHHhh
Confidence 467999999998877777777778899999999999999997654
No 407
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=93.75 E-value=0.29 Score=48.91 Aligned_cols=44 Identities=25% Similarity=0.346 Sum_probs=34.0
Q ss_pred ccchHHHHHHHHHHhcc-------------CCceEEEEEcCCCChHHHHHHHHHhhh
Q 002538 158 VKGLESTLEDVWRCLVE-------------ESAGIIGLYGMGGVGKTTLLTRINNKF 201 (911)
Q Consensus 158 ~~Gr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 201 (911)
+-|=.+.++++.+...- +..+-|..+|++|.|||-+|++|+|+.
T Consensus 179 vggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrt 235 (435)
T KOG0729|consen 179 VGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRT 235 (435)
T ss_pred ccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhccc
Confidence 54667777777665531 345678899999999999999999986
No 408
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.73 E-value=0.33 Score=52.50 Aligned_cols=90 Identities=18% Similarity=0.103 Sum_probs=53.8
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCc-cChHHHHHHHHHHcCCCCCccCCCCHHHHHHHHHH
Q 002538 176 SAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKD-LQIEKNQEIIGKKIGLFDDSWKNKNLDERALEIFK 254 (911)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 254 (911)
+.++++++|+.|+||||++..++... ..+ -..+.+++.... .....-++..++.++.+.. ...+..++...+..
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l-~~~--g~~V~lItaDtyR~gAveQLk~yae~lgvpv~--~~~dp~dL~~al~~ 279 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQL-LKQ--NRTVGFITTDTFRSGAVEQFQGYADKLDVELI--VATSPAELEEAVQY 279 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH-HHc--CCeEEEEeCCccCccHHHHHHHHhhcCCCCEE--ecCCHHHHHHHHHH
Confidence 46799999999999999999998765 222 234666665432 1234455556666655321 23455555544443
Q ss_pred Hhh-cceEEEEEccccc
Q 002538 255 ILR-EKKFVLLLDDIWE 270 (911)
Q Consensus 255 ~L~-~k~~LlVlDdv~~ 270 (911)
.-. +..=+|++|-.-.
T Consensus 280 l~~~~~~D~VLIDTAGr 296 (407)
T PRK12726 280 MTYVNCVDHILIDTVGR 296 (407)
T ss_pred HHhcCCCCEEEEECCCC
Confidence 321 3445777887643
No 409
>PRK00131 aroK shikimate kinase; Reviewed
Probab=93.69 E-value=0.059 Score=52.57 Aligned_cols=25 Identities=28% Similarity=0.392 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhh
Q 002538 177 AGIIGLYGMGGVGKTTLLTRINNKF 201 (911)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa~~v~~~~ 201 (911)
...|.++|++|+||||+|+.+++..
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999999886
No 410
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.65 E-value=0.38 Score=53.30 Aligned_cols=61 Identities=25% Similarity=0.321 Sum_probs=36.5
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCC-ccChHHHHHHHHHHcCCCC
Q 002538 176 SAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSK-DLQIEKNQEIIGKKIGLFD 237 (911)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~ 237 (911)
+..+|+++|..|+||||++..+.... ......+.+..++... .....+-+...++.++.+.
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~-~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~ 251 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARA-VIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSV 251 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH-HHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCce
Confidence 34799999999999999999888764 1122223344443222 1233334555556665543
No 411
>PRK09099 type III secretion system ATPase; Provisional
Probab=93.64 E-value=0.23 Score=55.38 Aligned_cols=92 Identities=18% Similarity=0.271 Sum_probs=54.7
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCccChHHHHHHHHHHcCCCCC-----ccCCCCHH---
Q 002538 175 ESAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDLQIEKNQEIIGKKIGLFDD-----SWKNKNLD--- 246 (911)
Q Consensus 175 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~--- 246 (911)
.+-..++|.|..|+|||||++.+.... .. -..+++....+.....+..+.+...-.+... ..+.....
T Consensus 161 ~~Gq~~~I~G~sG~GKTtLl~~ia~~~-~~---d~~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~ 236 (441)
T PRK09099 161 GEGQRMGIFAPAGVGKSTLMGMFARGT-QC---DVNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAK 236 (441)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC-CC---CeEEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHH
Confidence 456799999999999999999998765 11 1245554444444555555555543222110 00111111
Q ss_pred --HHHHHHHHHh--hcceEEEEEccccc
Q 002538 247 --ERALEIFKIL--REKKFVLLLDDIWE 270 (911)
Q Consensus 247 --~~~~~l~~~L--~~k~~LlVlDdv~~ 270 (911)
.....+.+++ +++++|+++||+-.
T Consensus 237 a~~~a~tiAEyfrd~G~~VLl~~DslTr 264 (441)
T PRK09099 237 AAYVATAIAEYFRDRGLRVLLMMDSLTR 264 (441)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeccchhH
Confidence 2223345555 57899999999854
No 412
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=93.64 E-value=0.17 Score=47.50 Aligned_cols=104 Identities=25% Similarity=0.344 Sum_probs=57.3
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCccChHHHHHHHHHHcCCCCCccCCCCHHHHHHHHHHH
Q 002538 176 SAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDLQIEKNQEIIGKKIGLFDDSWKNKNLDERALEIFKI 255 (911)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 255 (911)
.-.+++|+|..|.|||||++.+.... . .....+|+.... .+.... +-..-+...-.+...
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~-~---~~~G~i~~~~~~-------------~i~~~~---~lS~G~~~rv~lara 84 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGEL-E---PDEGIVTWGSTV-------------KIGYFE---QLSGGEKMRLALAKL 84 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCC-C---CCceEEEECCeE-------------EEEEEc---cCCHHHHHHHHHHHH
Confidence 45799999999999999999998865 2 223344432100 000000 011122333345666
Q ss_pred hhcceEEEEEcccccccc---cccccCCCCCCCCCCCcEEEEEcCchhhhh
Q 002538 256 LREKKFVLLLDDIWERVN---LNKVGVPLPSPQSTTASKVVFTTRFINVCG 303 (911)
Q Consensus 256 L~~k~~LlVlDdv~~~~~---~~~~~~~l~~~~~~~gs~IivTtR~~~v~~ 303 (911)
+..++-++++|+.-..-+ ...+...+. .. +..||++|.+.+...
T Consensus 85 l~~~p~illlDEP~~~LD~~~~~~l~~~l~--~~--~~til~~th~~~~~~ 131 (144)
T cd03221 85 LLENPNLLLLDEPTNHLDLESIEALEEALK--EY--PGTVILVSHDRYFLD 131 (144)
T ss_pred HhcCCCEEEEeCCccCCCHHHHHHHHHHHH--Hc--CCEEEEEECCHHHHH
Confidence 677788999998754322 222222222 11 245788887766554
No 413
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=93.62 E-value=0.053 Score=50.96 Aligned_cols=20 Identities=40% Similarity=0.645 Sum_probs=18.8
Q ss_pred EEEEEcCCCChHHHHHHHHH
Q 002538 179 IIGLYGMGGVGKTTLLTRIN 198 (911)
Q Consensus 179 vi~I~G~gGiGKTtLa~~v~ 198 (911)
.|+|.|.+|+||||+++.+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999987
No 414
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=93.50 E-value=0.37 Score=51.67 Aligned_cols=26 Identities=35% Similarity=0.604 Sum_probs=23.9
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhh
Q 002538 176 SAGIIGLYGMGGVGKTTLLTRINNKF 201 (911)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 201 (911)
+..+++++|.+|+||||++..++...
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l 138 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKY 138 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 46799999999999999999999887
No 415
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=93.50 E-value=0.061 Score=52.78 Aligned_cols=24 Identities=33% Similarity=0.504 Sum_probs=21.7
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhh
Q 002538 178 GIIGLYGMGGVGKTTLLTRINNKF 201 (911)
Q Consensus 178 ~vi~I~G~gGiGKTtLa~~v~~~~ 201 (911)
.+++|+|+.|+||||+++.+....
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~ 25 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARL 25 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999998875
No 416
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=93.47 E-value=0.1 Score=51.31 Aligned_cols=37 Identities=35% Similarity=0.493 Sum_probs=30.5
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEe
Q 002538 177 AGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVV 216 (911)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~ 216 (911)
.++|.|+|+.|+|||||++.+.... ...|..+++.+-
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~---~~~~~~~v~~TT 38 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEF---PDKFGRVVSHTT 38 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHS---TTTEEEEEEEES
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc---ccccccceeecc
Confidence 4789999999999999999999987 567865665543
No 417
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=93.47 E-value=0.15 Score=59.68 Aligned_cols=73 Identities=14% Similarity=0.175 Sum_probs=55.1
Q ss_pred cccchHHHHHHHHHHhccCCceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCccChHHHHHHHHHHcC
Q 002538 157 IVKGLESTLEDVWRCLVEESAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDLQIEKNQEIIGKKIG 234 (911)
Q Consensus 157 ~~~Gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 234 (911)
.|+|.++.++.+...+... +.+.++|.+|+||||+|+.+.+.. -..+++..+|..-+ ..+...+++.++.+++
T Consensus 32 ~vigq~~a~~~L~~~~~~~--~~~l~~G~~G~GKttla~~l~~~l--~~~~~~~~~~~~np-~~~~~~~~~~v~~~~G 104 (637)
T PRK13765 32 QVIGQEHAVEVIKKAAKQR--RHVMMIGSPGTGKSMLAKAMAELL--PKEELQDILVYPNP-EDPNNPKIRTVPAGKG 104 (637)
T ss_pred HcCChHHHHHHHHHHHHhC--CeEEEECCCCCcHHHHHHHHHHHc--ChHhHHHheEeeCC-CcchHHHHHHHHHhcC
Confidence 4679988888887766554 468899999999999999999876 23456888887663 3466777777776554
No 418
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=93.46 E-value=0.072 Score=51.18 Aligned_cols=26 Identities=27% Similarity=0.459 Sum_probs=23.8
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhh
Q 002538 176 SAGIIGLYGMGGVGKTTLLTRINNKF 201 (911)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 201 (911)
..++++|+|..|+|||||++.+....
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l 30 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPAL 30 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHH
Confidence 46799999999999999999999886
No 419
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=93.46 E-value=0.44 Score=47.97 Aligned_cols=26 Identities=31% Similarity=0.500 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhh
Q 002538 176 SAGIIGLYGMGGVGKTTLLTRINNKF 201 (911)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 201 (911)
.-.+++|.|..|.|||||++.+..-.
T Consensus 33 ~G~~~~i~G~nGsGKSTLl~~l~Gl~ 58 (207)
T cd03369 33 AGEKIGIVGRTGAGKSTLILALFRFL 58 (207)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 55799999999999999999998654
No 420
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=93.46 E-value=0.13 Score=52.78 Aligned_cols=25 Identities=32% Similarity=0.418 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhh
Q 002538 177 AGIIGLYGMGGVGKTTLLTRINNKF 201 (911)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa~~v~~~~ 201 (911)
...++|||++|.|||-+|+.|+...
T Consensus 166 Pkg~ll~GppGtGKTlla~~Vaa~m 190 (388)
T KOG0651|consen 166 PKGLLLYGPPGTGKTLLARAVAATM 190 (388)
T ss_pred CceeEEeCCCCCchhHHHHHHHHhc
Confidence 4689999999999999999999887
No 421
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=93.46 E-value=0.1 Score=56.23 Aligned_cols=46 Identities=17% Similarity=0.272 Sum_probs=40.1
Q ss_pred ccccchHHHHHHHHHHhccCCceEEEEEcCCCChHHHHHHHHHhhh
Q 002538 156 AIVKGLESTLEDVWRCLVEESAGIIGLYGMGGVGKTTLLTRINNKF 201 (911)
Q Consensus 156 ~~~~Gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 201 (911)
..|+|.++.+..++..+.+.+..-|.|.|..|+||||+|+.+++-.
T Consensus 17 ~~ivGq~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~l 62 (350)
T CHL00081 17 TAIVGQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDLL 62 (350)
T ss_pred HHHhChHHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 3467999999999888888888888899999999999999997764
No 422
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=93.46 E-value=0.11 Score=55.37 Aligned_cols=49 Identities=27% Similarity=0.336 Sum_probs=35.0
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCccChHHHHHH
Q 002538 177 AGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDLQIEKNQEI 228 (911)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 228 (911)
.+++.+.|.||+||||+|.+.+-... ..+ ..++-|+.....++.+++..
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA--~~g-~kvLlvStDPAhsL~d~f~~ 50 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLA--ESG-KKVLLVSTDPAHSLGDVFDL 50 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHH--HcC-CcEEEEEeCCCCchHhhhcc
Confidence 47899999999999999998666552 222 44777776666666655444
No 423
>PRK15453 phosphoribulokinase; Provisional
Probab=93.43 E-value=0.45 Score=49.27 Aligned_cols=26 Identities=31% Similarity=0.470 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhh
Q 002538 176 SAGIIGLYGMGGVGKTTLLTRINNKF 201 (911)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 201 (911)
+..+|+|.|.+|+||||+|+.+.+..
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~if 29 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKIF 29 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 56799999999999999999998765
No 424
>PRK11823 DNA repair protein RadA; Provisional
Probab=93.39 E-value=0.23 Score=56.11 Aligned_cols=85 Identities=22% Similarity=0.326 Sum_probs=50.1
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCccChHHHHHHHHHHcCCCCCcc---CCCCHHHHHHHH
Q 002538 176 SAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDLQIEKNQEIIGKKIGLFDDSW---KNKNLDERALEI 252 (911)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 252 (911)
.-.++.|.|.+|+|||||+.+++.... ..-..++|++.... ..++... ++.++...+.. ...+.+++...+
T Consensus 79 ~Gs~~lI~G~pG~GKTtL~lq~a~~~a---~~g~~vlYvs~Ees--~~qi~~r-a~rlg~~~~~l~~~~e~~l~~i~~~i 152 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTLLLQVAARLA---AAGGKVLYVSGEES--ASQIKLR-AERLGLPSDNLYLLAETNLEAILATI 152 (446)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH---hcCCeEEEEEcccc--HHHHHHH-HHHcCCChhcEEEeCCCCHHHHHHHH
Confidence 456999999999999999999988762 22346788876543 3333322 44554422111 122333333333
Q ss_pred HHHhhcceEEEEEcccc
Q 002538 253 FKILREKKFVLLLDDIW 269 (911)
Q Consensus 253 ~~~L~~k~~LlVlDdv~ 269 (911)
. +.+.-++|+|.+.
T Consensus 153 ~---~~~~~lVVIDSIq 166 (446)
T PRK11823 153 E---EEKPDLVVIDSIQ 166 (446)
T ss_pred H---hhCCCEEEEechh
Confidence 2 2355578888774
No 425
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=93.38 E-value=0.1 Score=53.44 Aligned_cols=89 Identities=21% Similarity=0.204 Sum_probs=55.3
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhhccCCCC-CceEEEEEeCCccChHHHHHHHHHHcCCCCC-------------ccC
Q 002538 176 SAGIIGLYGMGGVGKTTLLTRINNKFLESPSD-FDCVIWVVVSKDLQIEKNQEIIGKKIGLFDD-------------SWK 241 (911)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~-f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-------------~~~ 241 (911)
..+++.|.|.+|+|||++|.++..... .. -+.++|++..... ..+.+.+. .++...+ ...
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~---~~~ge~vlyvs~ee~~--~~l~~~~~-s~g~d~~~~~~~g~l~~~d~~~~ 91 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGL---KNFGEKVLYVSFEEPP--EELIENMK-SFGWDLEEYEDSGKLKIIDAFPE 91 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH---HHHT--EEEEESSS-H--HHHHHHHH-TTTS-HHHHHHTTSEEEEESSGG
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhh---hhcCCcEEEEEecCCH--HHHHHHHH-HcCCcHHHHhhcCCEEEEecccc
Confidence 557999999999999999998765541 22 4567888765543 44444433 3322110 001
Q ss_pred -----CCCHHHHHHHHHHHhhc-ceEEEEEccccc
Q 002538 242 -----NKNLDERALEIFKILRE-KKFVLLLDDIWE 270 (911)
Q Consensus 242 -----~~~~~~~~~~l~~~L~~-k~~LlVlDdv~~ 270 (911)
..+.+.....+.+.++. +...+|+|.+..
T Consensus 92 ~~~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls~ 126 (226)
T PF06745_consen 92 RIGWSPNDLEELLSKIREAIEELKPDRVVIDSLSA 126 (226)
T ss_dssp GST-TSCCHHHHHHHHHHHHHHHTSSEEEEETHHH
T ss_pred cccccccCHHHHHHHHHHHHHhcCCCEEEEECHHH
Confidence 35677777888877764 457899998754
No 426
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=93.36 E-value=0.27 Score=54.48 Aligned_cols=95 Identities=13% Similarity=0.210 Sum_probs=58.0
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHhhhccCC--CCCc---------eEEEEEeCCccChHHHHHHHHHHcC-CCC-----
Q 002538 175 ESAGIIGLYGMGGVGKTTLLTRINNKFLESP--SDFD---------CVIWVVVSKDLQIEKNQEIIGKKIG-LFD----- 237 (911)
Q Consensus 175 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--~~f~---------~~~wv~~s~~~~~~~~~~~i~~~l~-~~~----- 237 (911)
.+-..++|.|-.|+|||||+.++.+.. ... ...| .++++-+++.....+.+...+..-+ +..
T Consensus 139 g~GQRigIfagsGvGKs~L~~~i~~~~-~~~~~~~aD~~~~~~~~~v~V~a~IGerre~~efi~~~l~~~g~l~rtvvv~ 217 (466)
T TIGR01040 139 ARGQKIPIFSAAGLPHNEIAAQICRQA-GLVKLPTKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSMERVCLFL 217 (466)
T ss_pred ccCCeeeeecCCCCCHHHHHHHHHHhh-ccccccccccccccCCceEEEEEEeeeehHHHHHHHHHHHhcCCcceEEEEE
Confidence 355789999999999999999998876 210 0022 6677777777555554555554444 211
Q ss_pred CccCCCCHH-----HHHHHHHHHhh---cceEEEEEccccc
Q 002538 238 DSWKNKNLD-----ERALEIFKILR---EKKFVLLLDDIWE 270 (911)
Q Consensus 238 ~~~~~~~~~-----~~~~~l~~~L~---~k~~LlVlDdv~~ 270 (911)
...+..... .....+.++++ ++++|+++||+-.
T Consensus 218 atsd~p~~~R~~a~~~a~tiAEyfr~~~G~~VLl~~DslTr 258 (466)
T TIGR01040 218 NLANDPTIERIITPRLALTTAEYLAYQCEKHVLVILTDMSS 258 (466)
T ss_pred ECCCCCHHHHHHHHhhhHHHHHHHHHhcCCcEEEeccChHH
Confidence 011111111 12233556665 6999999999954
No 427
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=93.34 E-value=0.072 Score=52.02 Aligned_cols=25 Identities=24% Similarity=0.373 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhh
Q 002538 177 AGIIGLYGMGGVGKTTLLTRINNKF 201 (911)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa~~v~~~~ 201 (911)
.++|.+.|++|+||||+|+.+....
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~ 26 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVL 26 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3589999999999999999998775
No 428
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=93.34 E-value=0.14 Score=52.69 Aligned_cols=63 Identities=22% Similarity=0.269 Sum_probs=45.2
Q ss_pred HHHHHHhcc--CCceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCccChHHHHHHH
Q 002538 166 EDVWRCLVE--ESAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDLQIEKNQEII 229 (911)
Q Consensus 166 ~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 229 (911)
.+++..+.. ++..+|+|.|.||+|||||.-.+.... ...++--.++-|.-|..++--.++.+=
T Consensus 38 ~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l-~~~G~rVaVlAVDPSSp~TGGsiLGDR 102 (323)
T COG1703 38 RELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGREL-RERGHRVAVLAVDPSSPFTGGSILGDR 102 (323)
T ss_pred HHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHH-HHCCcEEEEEEECCCCCCCCccccccH
Confidence 344444443 467799999999999999999998888 455565677777777776655554433
No 429
>PRK00889 adenylylsulfate kinase; Provisional
Probab=93.34 E-value=0.079 Score=51.73 Aligned_cols=26 Identities=27% Similarity=0.466 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhh
Q 002538 176 SAGIIGLYGMGGVGKTTLLTRINNKF 201 (911)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 201 (911)
...+|.|+|.+|+||||+|+.++...
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l 28 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKL 28 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35699999999999999999999886
No 430
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=93.33 E-value=0.11 Score=55.34 Aligned_cols=152 Identities=19% Similarity=0.278 Sum_probs=81.4
Q ss_pred cchHHHHHHHHHHhcc-----------------CCceEEEEEcCCCChHHHHHHHHHhhhccCCCC--C---ceEEE---
Q 002538 159 KGLESTLEDVWRCLVE-----------------ESAGIIGLYGMGGVGKTTLLTRINNKFLESPSD--F---DCVIW--- 213 (911)
Q Consensus 159 ~Gr~~~~~~l~~~L~~-----------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~--f---~~~~w--- 213 (911)
.|-..+...|.+.+.. ....+++|+|.+|.||||+.+++.... ..... + ...+-
T Consensus 374 ~~lp~e~~~IleSFGv~~r~ieryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~-~~~~ee~y~p~sg~v~vp~ 452 (593)
T COG2401 374 KGLPNEFQDILESFGVRQRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQ-KGRGEEKYRPDSGKVEVPK 452 (593)
T ss_pred ccCChHHHHHHHHhcchheeeeeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHh-hcccccccCCCCCceeccc
Confidence 3556667777666642 134589999999999999999998765 11111 1 01111
Q ss_pred ------EEeCC--ccChHHHHHHHHHHcC-------------CCCCc-----c-CCCCHHHHHHHHHHHhhcceEEEEEc
Q 002538 214 ------VVVSK--DLQIEKNQEIIGKKIG-------------LFDDS-----W-KNKNLDERALEIFKILREKKFVLLLD 266 (911)
Q Consensus 214 ------v~~s~--~~~~~~~~~~i~~~l~-------------~~~~~-----~-~~~~~~~~~~~l~~~L~~k~~LlVlD 266 (911)
+..+- .++-..+++.+.+..+ +.+.. . ...+-+.-..+|.+.++.+.-+++.|
T Consensus 453 nt~~a~iPge~Ep~f~~~tilehl~s~tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iD 532 (593)
T COG2401 453 NTVSALIPGEYEPEFGEVTILEHLRSKTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLID 532 (593)
T ss_pred cchhhccCcccccccCchhHHHHHhhccCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhh
Confidence 11111 1222244444443332 22210 1 12223344567888888898899999
Q ss_pred ccccccc-c--ccccCCCCCCCCCCCcEEEEEcCchhhhhccCCcceE
Q 002538 267 DIWERVN-L--NKVGVPLPSPQSTTASKVVFTTRFINVCGSMEAHRNF 311 (911)
Q Consensus 267 dv~~~~~-~--~~~~~~l~~~~~~~gs~IivTtR~~~v~~~~~~~~~~ 311 (911)
.....-| . ..+...+.......|+.+++.|+.+++...+..+..+
T Consensus 533 EF~AhLD~~TA~rVArkiselaRe~giTlivvThrpEv~~AL~PD~li 580 (593)
T COG2401 533 EFAAHLDELTAVRVARKISELAREAGITLIVVTHRPEVGNALRPDTLI 580 (593)
T ss_pred hhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHhccCCceeE
Confidence 8764321 0 0010001100223466677777779998877655443
No 431
>PRK13949 shikimate kinase; Provisional
Probab=93.32 E-value=0.069 Score=51.67 Aligned_cols=24 Identities=38% Similarity=0.408 Sum_probs=21.8
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhh
Q 002538 178 GIIGLYGMGGVGKTTLLTRINNKF 201 (911)
Q Consensus 178 ~vi~I~G~gGiGKTtLa~~v~~~~ 201 (911)
+.|.|+|+.|.||||+++.+++..
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l 25 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALAREL 25 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 358899999999999999999886
No 432
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=93.32 E-value=0.23 Score=55.22 Aligned_cols=94 Identities=18% Similarity=0.268 Sum_probs=58.4
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCcc-ChHHHHHHHHHHcCCCC-----CccCCCCHH--
Q 002538 175 ESAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDL-QIEKNQEIIGKKIGLFD-----DSWKNKNLD-- 246 (911)
Q Consensus 175 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~-----~~~~~~~~~-- 246 (911)
.+-..++|.|..|+|||||+.++..... ..+-+.++++-+++.. ...++++.+...-.+.. ...+.....
T Consensus 141 g~GQr~~If~~~G~GKt~L~~~~~~~~~--~~~~~v~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~ 218 (461)
T TIGR01039 141 AKGGKIGLFGGAGVGKTVLIQELINNIA--KEHGGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARM 218 (461)
T ss_pred ccCCEEEeecCCCCChHHHHHHHHHHHH--hcCCCeEEEEEecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHH
Confidence 3567899999999999999999887751 2223467777776654 44566666654321111 011111111
Q ss_pred ---HHHHHHHHHh---hcceEEEEEccccc
Q 002538 247 ---ERALEIFKIL---REKKFVLLLDDIWE 270 (911)
Q Consensus 247 ---~~~~~l~~~L---~~k~~LlVlDdv~~ 270 (911)
.....+.+++ +++++|+++||+-.
T Consensus 219 ~a~~~a~tiAEyfrd~~G~~VLll~DslTR 248 (461)
T TIGR01039 219 RVALTGLTMAEYFRDEQGQDVLLFIDNIFR 248 (461)
T ss_pred HHHHHHHHHHHHHHHhcCCeeEEEecchhH
Confidence 1233456666 46899999999954
No 433
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=93.32 E-value=0.1 Score=51.98 Aligned_cols=27 Identities=30% Similarity=0.437 Sum_probs=23.4
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHhhh
Q 002538 175 ESAGIIGLYGMGGVGKTTLLTRINNKF 201 (911)
Q Consensus 175 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 201 (911)
..-.+++|+|.+|.|||||++.+..-.
T Consensus 31 ~~Ge~lgivGeSGsGKSTL~r~l~Gl~ 57 (252)
T COG1124 31 ERGETLGIVGESGSGKSTLARLLAGLE 57 (252)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhccc
Confidence 356799999999999999999997654
No 434
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=93.32 E-value=0.15 Score=51.69 Aligned_cols=61 Identities=21% Similarity=0.244 Sum_probs=37.4
Q ss_pred HHHHHHHHhcc--CCceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCccChHHH
Q 002538 164 TLEDVWRCLVE--ESAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDLQIEKN 225 (911)
Q Consensus 164 ~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~ 225 (911)
...++++.+.. .+..+|+|.|.+|+|||||.-.+.... ..+.+--.++-|.-|..++--.+
T Consensus 14 ~~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~-~~~g~~VaVlAVDPSSp~tGGAl 76 (266)
T PF03308_consen 14 EARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIREL-RERGKRVAVLAVDPSSPFTGGAL 76 (266)
T ss_dssp HHHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHH-HHTT--EEEEEE-GGGGCC---S
T ss_pred HHHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHH-hhcCCceEEEEECCCCCCCCCcc
Confidence 34455555543 467899999999999999999999888 33344445666665555544333
No 435
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=93.25 E-value=0.061 Score=50.68 Aligned_cols=23 Identities=35% Similarity=0.574 Sum_probs=21.1
Q ss_pred EEEEEcCCCChHHHHHHHHHhhh
Q 002538 179 IIGLYGMGGVGKTTLLTRINNKF 201 (911)
Q Consensus 179 vi~I~G~gGiGKTtLa~~v~~~~ 201 (911)
+|.|.|..|+||||+|+.+....
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999875
No 436
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=93.21 E-value=0.26 Score=47.95 Aligned_cols=120 Identities=18% Similarity=0.127 Sum_probs=61.2
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCC---ccChHHHHHHHH--HHcCCCCC-ccCCCCHHH--
Q 002538 176 SAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSK---DLQIEKNQEIIG--KKIGLFDD-SWKNKNLDE-- 247 (911)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~---~~~~~~~~~~i~--~~l~~~~~-~~~~~~~~~-- 247 (911)
....|-|+|..|-||||.|..+.-+. ..+--.+..+..-+ .......++.+- ........ .+...+.++
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra---~g~G~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~ 97 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRA---VGHGKKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERDI 97 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHH---HHCCCeEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHH
Confidence 34688899999999999999888776 22222333333222 233344443321 00000000 111111111
Q ss_pred -----HHHHHHHHhhcce-EEEEEcccccc-----cccccccCCCCCCCCCCCcEEEEEcCchh
Q 002538 248 -----RALEIFKILREKK-FVLLLDDIWER-----VNLNKVGVPLPSPQSTTASKVVFTTRFIN 300 (911)
Q Consensus 248 -----~~~~l~~~L~~k~-~LlVlDdv~~~-----~~~~~~~~~l~~~~~~~gs~IivTtR~~~ 300 (911)
......+.+...+ =|||||.+-.. .+.+++...+. ....+.-||+|-|+..
T Consensus 98 ~~~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~--~rp~~~evVlTGR~~p 159 (191)
T PRK05986 98 AAAREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALN--ARPGMQHVVITGRGAP 159 (191)
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHH--cCCCCCEEEEECCCCC
Confidence 1223334444444 49999998542 22333333333 3345678999999653
No 437
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=93.20 E-value=0.062 Score=50.92 Aligned_cols=23 Identities=30% Similarity=0.570 Sum_probs=20.3
Q ss_pred EEEEEcCCCChHHHHHHHHHhhh
Q 002538 179 IIGLYGMGGVGKTTLLTRINNKF 201 (911)
Q Consensus 179 vi~I~G~gGiGKTtLa~~v~~~~ 201 (911)
+|.+.|.+|+||||+|+.+.+..
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 46799999999999999997764
No 438
>PRK13947 shikimate kinase; Provisional
Probab=93.19 E-value=0.067 Score=51.99 Aligned_cols=23 Identities=39% Similarity=0.507 Sum_probs=21.2
Q ss_pred EEEEEcCCCChHHHHHHHHHhhh
Q 002538 179 IIGLYGMGGVGKTTLLTRINNKF 201 (911)
Q Consensus 179 vi~I~G~gGiGKTtLa~~v~~~~ 201 (911)
.|.|+|++|+||||+|+.+.+..
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~l 25 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTL 25 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh
Confidence 48899999999999999999886
No 439
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=93.17 E-value=0.36 Score=49.53 Aligned_cols=78 Identities=14% Similarity=0.038 Sum_probs=42.9
Q ss_pred EEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCC--ccChHHHHHHHHHHc--CCCCCc--cCCCCHHHHHHHH
Q 002538 179 IIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSK--DLQIEKNQEIIGKKI--GLFDDS--WKNKNLDERALEI 252 (911)
Q Consensus 179 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~--~~~~~~~~~~i~~~l--~~~~~~--~~~~~~~~~~~~l 252 (911)
+|+|.|.+|+||||+|+.+.+.. ...+ ..++.++... ..+-...-+.+.... +..-+. ....+.+.+.+.+
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l-~~~g--~~v~vI~~D~yyr~~r~~~~~~~~~a~~~~~nfdHf~PeAnd~dlL~~~l 77 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIF-AREG--IHPAVVEGDSFHRYERMEMKMAIAEALDAGRNFSHFGPEANLFDLLEELF 77 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH-HhcC--CceEEEeccccccCCchhHHHHHHHHhhcCCCCCCCCcccccHHHHHHHH
Confidence 58999999999999999998876 2111 1233333222 122223333333322 111111 2455667777777
Q ss_pred HHHhhcc
Q 002538 253 FKILREK 259 (911)
Q Consensus 253 ~~~L~~k 259 (911)
..+.+++
T Consensus 78 ~~L~~g~ 84 (277)
T cd02029 78 RTYGETG 84 (277)
T ss_pred HHHHcCC
Confidence 7776654
No 440
>PRK14530 adenylate kinase; Provisional
Probab=93.17 E-value=0.072 Score=54.02 Aligned_cols=24 Identities=33% Similarity=0.439 Sum_probs=21.8
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhh
Q 002538 178 GIIGLYGMGGVGKTTLLTRINNKF 201 (911)
Q Consensus 178 ~vi~I~G~gGiGKTtLa~~v~~~~ 201 (911)
+.|.|+|++|+||||+|+.++...
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998876
No 441
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.15 E-value=0.004 Score=60.64 Aligned_cols=84 Identities=18% Similarity=0.138 Sum_probs=40.7
Q ss_pred CCCCCccEEEcccCcccccChhhhccCCCCcEEEccCCCCcccCccccCcCCCCEEeccCCCcCCcchhhhccCcCcEEe
Q 002538 536 PTCPHLLTLFLSHNQLRWISEDFFQFMPSLKVLNLSFTKRHKFPSGISKLASLQLIDLSYTSIRGLPEELKALINLKCLN 615 (911)
Q Consensus 536 ~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~l~~L~~L~~L~ 615 (911)
..+...+.|+++.|.+...... |+-+..|.-|+++.+.+..+|..++.+..++.+++..|....+|.+++.++.+++++
T Consensus 39 ~~~kr~tvld~~s~r~vn~~~n-~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e 117 (326)
T KOG0473|consen 39 ASFKRVTVLDLSSNRLVNLGKN-FSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNE 117 (326)
T ss_pred hccceeeeehhhhhHHHhhccc-hHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhh
Confidence 3444455555555544333322 333444444555555555555555555555555555555555555555555555555
Q ss_pred cCCCc
Q 002538 616 LDQTK 620 (911)
Q Consensus 616 L~~~~ 620 (911)
+.++.
T Consensus 118 ~k~~~ 122 (326)
T KOG0473|consen 118 QKKTE 122 (326)
T ss_pred hccCc
Confidence 55444
No 442
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=93.11 E-value=0.35 Score=53.67 Aligned_cols=91 Identities=22% Similarity=0.298 Sum_probs=52.9
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCC-ccChHHHHHHHHHHcCCCC-----CccCCCCHHH-
Q 002538 175 ESAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSK-DLQIEKNQEIIGKKIGLFD-----DSWKNKNLDE- 247 (911)
Q Consensus 175 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~- 247 (911)
..-..++|+|..|+|||||++.+.+.. +.+..+++.++. ...+.+..++....=.... ...+......
T Consensus 153 ~~GqrigI~G~sG~GKSTLL~~I~~~~-----~~d~~vi~~iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r~ 227 (433)
T PRK07594 153 GEGQRVGIFSAPGVGKSTLLAMLCNAP-----DADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERV 227 (433)
T ss_pred CCCCEEEEECCCCCCccHHHHHhcCCC-----CCCEEEEEEECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHHH
Confidence 456789999999999999999987754 234455555544 3344455555432111100 0011111111
Q ss_pred ----HHHHHHHHh--hcceEEEEEccccc
Q 002538 248 ----RALEIFKIL--REKKFVLLLDDIWE 270 (911)
Q Consensus 248 ----~~~~l~~~L--~~k~~LlVlDdv~~ 270 (911)
....+.+++ +++++|+++||+-.
T Consensus 228 ~a~~~a~tiAEyfrd~G~~VLl~~Dsltr 256 (433)
T PRK07594 228 RALFVATTIAEFFRDNGKRVVLLADSLTR 256 (433)
T ss_pred HHHHHHHHHHHHHHHCCCcEEEEEeCHHH
Confidence 223345555 57899999999954
No 443
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.11 E-value=0.34 Score=54.59 Aligned_cols=59 Identities=24% Similarity=0.341 Sum_probs=36.4
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCC-ccChHHHHHHHHHHcCCC
Q 002538 177 AGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSK-DLQIEKNQEIIGKKIGLF 236 (911)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~~ 236 (911)
..|++++|..|+||||++.+++... ..+..-..+..++... .....+-++..++.++.+
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~-~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVp 315 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARC-VMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVP 315 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHH-HHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCC
Confidence 4799999999999999999999876 2222222455554332 122333445555555543
No 444
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=93.11 E-value=0.13 Score=49.67 Aligned_cols=43 Identities=21% Similarity=0.192 Sum_probs=31.3
Q ss_pred cchHHHHHHHHHHhcc--CCceEEEEEcCCCChHHHHHHHHHhhh
Q 002538 159 KGLESTLEDVWRCLVE--ESAGIIGLYGMGGVGKTTLLTRINNKF 201 (911)
Q Consensus 159 ~Gr~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 201 (911)
+|.+..+.++++.+.. ....-|.|+|..|+||+.+|+.+++..
T Consensus 2 iG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s 46 (168)
T PF00158_consen 2 IGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNS 46 (168)
T ss_dssp S--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCS
T ss_pred EeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhh
Confidence 5777777777777653 222455599999999999999999975
No 445
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=93.09 E-value=0.14 Score=48.44 Aligned_cols=34 Identities=26% Similarity=0.377 Sum_probs=28.0
Q ss_pred HHHHHHHhccCCceEEEEEcCCCChHHHHHHHHHhhh
Q 002538 165 LEDVWRCLVEESAGIIGLYGMGGVGKTTLLTRINNKF 201 (911)
Q Consensus 165 ~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 201 (911)
++++.+++.. +++.++|..|+|||||...+..+.
T Consensus 26 ~~~l~~~l~~---k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 26 IEELKELLKG---KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp HHHHHHHHTT---SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred HHHHHHHhcC---CEEEEECCCCCCHHHHHHHHHhhc
Confidence 5556666643 899999999999999999998874
No 446
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.09 E-value=0.11 Score=49.81 Aligned_cols=116 Identities=20% Similarity=0.220 Sum_probs=62.2
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCccChHHHHHHHHHHcCCCCCccCCCCHHHHHHHHHHH
Q 002538 176 SAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDLQIEKNQEIIGKKIGLFDDSWKNKNLDERALEIFKI 255 (911)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 255 (911)
.-.+++|+|..|.|||||++.+.... ......+++......... .......+.... +-..-+...-.+...
T Consensus 24 ~g~~~~i~G~nGsGKStll~~l~g~~----~~~~G~i~~~~~~~~~~~--~~~~~~~i~~~~---qlS~G~~~r~~l~~~ 94 (157)
T cd00267 24 AGEIVALVGPNGSGKSTLLRAIAGLL----KPTSGEILIDGKDIAKLP--LEELRRRIGYVP---QLSGGQRQRVALARA 94 (157)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC----CCCccEEEECCEEcccCC--HHHHHhceEEEe---eCCHHHHHHHHHHHH
Confidence 44799999999999999999998875 223445554322111100 011111121110 011123333345666
Q ss_pred hhcceEEEEEcccccccc------cccccCCCCCCCCCCCcEEEEEcCchhhhhc
Q 002538 256 LREKKFVLLLDDIWERVN------LNKVGVPLPSPQSTTASKVVFTTRFINVCGS 304 (911)
Q Consensus 256 L~~k~~LlVlDdv~~~~~------~~~~~~~l~~~~~~~gs~IivTtR~~~v~~~ 304 (911)
+....-++++|+.-..-+ +.++...+. ..+..|+++|-+.+....
T Consensus 95 l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~----~~~~tii~~sh~~~~~~~ 145 (157)
T cd00267 95 LLLNPDLLLLDEPTSGLDPASRERLLELLRELA----EEGRTVIIVTHDPELAEL 145 (157)
T ss_pred HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHH----HCCCEEEEEeCCHHHHHH
Confidence 666788999999864322 222211111 124568888877766554
No 447
>PRK06936 type III secretion system ATPase; Provisional
Probab=93.08 E-value=0.28 Score=54.36 Aligned_cols=91 Identities=20% Similarity=0.291 Sum_probs=54.7
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCcc-ChHHHHHHHHHHcCCCC-----CccCCCCHH--
Q 002538 175 ESAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDL-QIEKNQEIIGKKIGLFD-----DSWKNKNLD-- 246 (911)
Q Consensus 175 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~-----~~~~~~~~~-- 246 (911)
.+-..++|.|..|+|||||.+++++.. . -+.++++-+++.. ...++.+..+..-++.. ...+.....
T Consensus 160 ~~Gq~~~I~G~sG~GKStLl~~Ia~~~-~----~dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~ 234 (439)
T PRK06936 160 GEGQRMGIFAAAGGGKSTLLASLIRSA-E----VDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERA 234 (439)
T ss_pred cCCCEEEEECCCCCChHHHHHHHhcCC-C----CCEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHH
Confidence 356789999999999999999998875 1 2567777776654 34444444332211111 000111111
Q ss_pred ---HHHHHHHHHh--hcceEEEEEccccc
Q 002538 247 ---ERALEIFKIL--REKKFVLLLDDIWE 270 (911)
Q Consensus 247 ---~~~~~l~~~L--~~k~~LlVlDdv~~ 270 (911)
.....+.+++ +++++|+++||+-.
T Consensus 235 ~a~~~a~tiAEyfrd~G~~Vll~~DslTR 263 (439)
T PRK06936 235 KAGFVATSIAEYFRDQGKRVLLLMDSVTR 263 (439)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEeccchhH
Confidence 1123344555 58999999999954
No 448
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=93.07 E-value=0.32 Score=50.27 Aligned_cols=59 Identities=31% Similarity=0.377 Sum_probs=37.6
Q ss_pred EEEEEcCCCChHHHHHHHHHhhhccCCCCCc-------eEEEEEeCCcc-ChHHHHHHHHHHcCCCC
Q 002538 179 IIGLYGMGGVGKTTLLTRINNKFLESPSDFD-------CVIWVVVSKDL-QIEKNQEIIGKKIGLFD 237 (911)
Q Consensus 179 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~-------~~~wv~~s~~~-~~~~~~~~i~~~l~~~~ 237 (911)
++.|+|.||+|||||+-..+=....-++-|. .+++|++.... ++..-++.+..+++++.
T Consensus 91 ~~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvslEl~re~~L~Rl~~v~a~mgLsP 157 (402)
T COG3598 91 VSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLELYREDILERLEPVRARMGLSP 157 (402)
T ss_pred eEEEecCCcccHhHHHHHHHHHHHhhHHHhcccccCCCeEEEEEeccChHHHHHHHHHHHHHcCCCh
Confidence 4446799999999999776544322233343 56777655432 44555677778887764
No 449
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=93.06 E-value=0.075 Score=52.18 Aligned_cols=24 Identities=33% Similarity=0.433 Sum_probs=21.8
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhh
Q 002538 178 GIIGLYGMGGVGKTTLLTRINNKF 201 (911)
Q Consensus 178 ~vi~I~G~gGiGKTtLa~~v~~~~ 201 (911)
++|+|+|+.|+||||||+.+.+..
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 579999999999999999998864
No 450
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=93.05 E-value=0.13 Score=55.40 Aligned_cols=46 Identities=17% Similarity=0.304 Sum_probs=36.7
Q ss_pred ccccchHHHHHHHHHHhccCCceEEEEEcCCCChHHHHHHHHHhhh
Q 002538 156 AIVKGLESTLEDVWRCLVEESAGIIGLYGMGGVGKTTLLTRINNKF 201 (911)
Q Consensus 156 ~~~~Gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 201 (911)
..++|.+..++.+.-.+.+.+..-+.+.|..|+||||+|+.+.+-.
T Consensus 8 ~~i~Gq~~~~~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~la~ll 53 (334)
T PRK13407 8 SAIVGQEEMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAALL 53 (334)
T ss_pred HHhCCHHHHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHHHHC
Confidence 3467999999888765555555668899999999999999996654
No 451
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=93.02 E-value=0.42 Score=49.35 Aligned_cols=23 Identities=30% Similarity=0.496 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHHhhh
Q 002538 179 IIGLYGMGGVGKTTLLTRINNKF 201 (911)
Q Consensus 179 vi~I~G~gGiGKTtLa~~v~~~~ 201 (911)
+-.|+|+||+|||+||..++-..
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~v 25 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAM 25 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHH
Confidence 55789999999999999998764
No 452
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=93.01 E-value=0.27 Score=54.70 Aligned_cols=91 Identities=21% Similarity=0.264 Sum_probs=52.4
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCcc-ChHHHHHHHHHHcCCCC-----CccCCCCHH--
Q 002538 175 ESAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDL-QIEKNQEIIGKKIGLFD-----DSWKNKNLD-- 246 (911)
Q Consensus 175 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~-----~~~~~~~~~-- 246 (911)
.....++|+|..|+|||||++.+.... ..+.++...+.... +...+.+.+...-.+.. ...+.....
T Consensus 166 ~~GqrigI~G~sG~GKSTLl~~I~g~~-----~~dv~V~g~Ig~rg~ev~~~~~~~~~~~~l~rsvvv~atsd~~p~~r~ 240 (451)
T PRK05688 166 GRGQRLGLFAGTGVGKSVLLGMMTRFT-----EADIIVVGLIGERGREVKEFIEHILGEEGLKRSVVVASPADDAPLMRL 240 (451)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC-----CCCEEEEEEeCcCcHhHHHHHHHHhhcCCccEEEEEEECCCCCHHHHH
Confidence 355689999999999999999987653 12344444444332 44455555544322211 011111111
Q ss_pred ---HHHHHHHHHh--hcceEEEEEccccc
Q 002538 247 ---ERALEIFKIL--REKKFVLLLDDIWE 270 (911)
Q Consensus 247 ---~~~~~l~~~L--~~k~~LlVlDdv~~ 270 (911)
.....+.+++ +++++|+++||+-.
T Consensus 241 ~a~~~a~aiAEyfrd~G~~VLl~~DslTR 269 (451)
T PRK05688 241 RAAMYCTRIAEYFRDKGKNVLLLMDSLTR 269 (451)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEecchhH
Confidence 1223345555 58999999999954
No 453
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=92.99 E-value=0.33 Score=44.55 Aligned_cols=50 Identities=26% Similarity=0.370 Sum_probs=36.1
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCccChHHHHHHHHHHcCCC
Q 002538 178 GIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDLQIEKNQEIIGKKIGLF 236 (911)
Q Consensus 178 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~ 236 (911)
.+|.|.|.+|.||||+++++.... .-.| --.+++....-.+.+.+.+-+.
T Consensus 13 ~~i~vmGvsGsGKSTigk~L~~~l---~~~F------~dgDd~Hp~~NveKM~~GipLn 62 (191)
T KOG3354|consen 13 YVIVVMGVSGSGKSTIGKALSEEL---GLKF------IDGDDLHPPANVEKMTQGIPLN 62 (191)
T ss_pred eeEEEEecCCCChhhHHHHHHHHh---CCcc------cccccCCCHHHHHHHhcCCCCC
Confidence 389999999999999999999987 3333 1245566666666666655543
No 454
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=92.98 E-value=0.17 Score=58.55 Aligned_cols=45 Identities=22% Similarity=0.286 Sum_probs=37.6
Q ss_pred cccchHHHHHHHHHHhccCCceEEEEEcCCCChHHHHHHHHHhhh
Q 002538 157 IVKGLESTLEDVWRCLVEESAGIIGLYGMGGVGKTTLLTRINNKF 201 (911)
Q Consensus 157 ~~~Gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 201 (911)
.++|.+..++.+...+......-|.|+|..|+|||++|+.+++..
T Consensus 66 ~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 110 (531)
T TIGR02902 66 EIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEA 110 (531)
T ss_pred HeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 367999999999887766555667899999999999999998753
No 455
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=92.94 E-value=0.33 Score=54.31 Aligned_cols=92 Identities=20% Similarity=0.205 Sum_probs=50.8
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCccChHHHHHHHHHHcCCCC-----CccCCCCH----
Q 002538 175 ESAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDLQIEKNQEIIGKKIGLFD-----DSWKNKNL---- 245 (911)
Q Consensus 175 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~---- 245 (911)
....+++|+|..|+|||||++.+.... .. -..++++..-+.-+..++.+.....-.... ...+....
T Consensus 156 ~~Gq~i~I~G~sG~GKStLl~~I~~~~-~~---~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~~~~~~r~~ 231 (438)
T PRK07721 156 GKGQRVGIFAGSGVGKSTLMGMIARNT-SA---DLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSDQPALMRIK 231 (438)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhccc-CC---CeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCCCCHHHHHH
Confidence 466799999999999999999988765 21 223444433333344444333211110000 00011111
Q ss_pred -HHHHHHHHHHh--hcceEEEEEccccc
Q 002538 246 -DERALEIFKIL--REKKFVLLLDDIWE 270 (911)
Q Consensus 246 -~~~~~~l~~~L--~~k~~LlVlDdv~~ 270 (911)
......+.+++ +++++|+++||+-.
T Consensus 232 ~~~~a~~iAEyfr~~g~~Vll~~Dsltr 259 (438)
T PRK07721 232 GAYTATAIAEYFRDQGLNVMLMMDSVTR 259 (438)
T ss_pred HHHHHHHHHHHHHHCCCcEEEEEeChHH
Confidence 12233345555 58999999999854
No 456
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=92.93 E-value=0.49 Score=44.12 Aligned_cols=112 Identities=11% Similarity=0.153 Sum_probs=80.9
Q ss_pred CceeeceehhHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHH
Q 002538 3 NVCSFSISCDAVLSRCLDCTIRKAAYASELEANLADLQTELQKLIEARNDVLRRVMVAEQRRVKRTDQVQGWLSRVEAVE 82 (911)
Q Consensus 3 ~~~~~~~~~~~~~~~l~~~~~~e~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~ae~~~~~~~~~~~~Wl~~l~~~~ 82 (911)
+..+.+|+++.+++.|...+.+.......++.-.+.|..+++.|.=+..+++.. +...+..-+.=++++.+..
T Consensus 3 ~eL~~gaalG~~~~eLlk~v~~~~~k~~~fk~~l~~L~sTl~~i~P~i~eI~~~-------~~eld~~~~ee~e~L~~~L 75 (147)
T PF05659_consen 3 AELVGGAALGAVFGELLKAVIDASKKSLSFKSILKRLESTLESIIPIIKEIDKL-------NVELDRPRQEEIERLKELL 75 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHH-------hhhcCCchhHHHHHHHHHH
Confidence 344567888889999999888888888889998999999999888888876442 1122233366778889999
Q ss_pred HHHHHHHhcCCcccccccccCccCCCcchhchhHHHHHHHHHHHHHHh
Q 002538 83 TTAGKLIGDGPQETEKLCLGGCCSKDFNSSYKFGKQVVKALRDVKTLE 130 (911)
Q Consensus 83 ~~~ed~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~ 130 (911)
.++.++++.|..-. .+++...++.+++|.++-+.+....
T Consensus 76 ~~g~~LV~k~sk~~---------r~n~~kk~~y~~Ki~~le~~l~~f~ 114 (147)
T PF05659_consen 76 EKGKELVEKCSKVR---------RWNLYKKPRYARKIEELEESLRRFI 114 (147)
T ss_pred HHHHHHHHHhcccc---------HHHHHhhHhHHHHHHHHHHHHHHHh
Confidence 99999998875321 1244556667778877777666543
No 457
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=92.92 E-value=0.086 Score=48.98 Aligned_cols=23 Identities=52% Similarity=0.807 Sum_probs=20.7
Q ss_pred EEEEEcCCCChHHHHHHHHHhhh
Q 002538 179 IIGLYGMGGVGKTTLLTRINNKF 201 (911)
Q Consensus 179 vi~I~G~gGiGKTtLa~~v~~~~ 201 (911)
.|+|+|+.|+|||||++.+.+..
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~ 23 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEF 23 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcC
Confidence 37899999999999999998875
No 458
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=92.90 E-value=0.1 Score=52.46 Aligned_cols=31 Identities=23% Similarity=0.396 Sum_probs=27.1
Q ss_pred HhccCCceEEEEEcCCCChHHHHHHHHHhhh
Q 002538 171 CLVEESAGIIGLYGMGGVGKTTLLTRINNKF 201 (911)
Q Consensus 171 ~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 201 (911)
.+.+.++++|+++|..|+|||||...+.+..
T Consensus 16 ~~~~~~~~~i~~~G~~gsGKTTli~~l~~~~ 46 (207)
T TIGR00073 16 RLDKHGLVVLNFMSSPGSGKTTLIEKLIDNL 46 (207)
T ss_pred HhhhcCcEEEEEECCCCCCHHHHHHHHHHHH
Confidence 3445689999999999999999999998875
No 459
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=92.89 E-value=2.9 Score=44.84 Aligned_cols=48 Identities=17% Similarity=0.141 Sum_probs=33.1
Q ss_pred eEEccCCCHHHHHHHHHHHhCCcccCCCccHHHHHHHHHHHhCCcchH
Q 002538 310 NFKVECLTEKHAWELFQMKVGEETLKSHPHVFELAQVVAKECGGLPLA 357 (911)
Q Consensus 310 ~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~GlPLa 357 (911)
++++.+++.+|+..++.-.+...-......-+...+++.-..+|+|--
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~e 305 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPRE 305 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHH
Confidence 789999999999999987764433222233345556666667888854
No 460
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=92.89 E-value=0.32 Score=57.16 Aligned_cols=73 Identities=16% Similarity=0.156 Sum_probs=49.2
Q ss_pred cccchHHHHHHHHHHhccCCceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCccChHHHHHHHHHHcC
Q 002538 157 IVKGLESTLEDVWRCLVEESAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDLQIEKNQEIIGKKIG 234 (911)
Q Consensus 157 ~~~Gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 234 (911)
.++|.++.++.+...+.... .+.++|++|+||||+|+.+.+.. . ...|...+++.-+ ..+...++..++.+++
T Consensus 19 ~viG~~~a~~~l~~a~~~~~--~~ll~G~pG~GKT~la~~la~~l-~-~~~~~~~~~~~n~-~~~~~~~~~~v~~~~g 91 (608)
T TIGR00764 19 QVIGQEEAVEIIKKAAKQKR--NVLLIGEPGVGKSMLAKAMAELL-P-DEELEDILVYPNP-EDPNMPRIVEVPAGEG 91 (608)
T ss_pred hccCHHHHHHHHHHHHHcCC--CEEEECCCCCCHHHHHHHHHHHc-C-chhheeEEEEeCC-CCCchHHHHHHHHhhc
Confidence 46699988887777665543 55599999999999999999886 2 2344444444333 2344555666666654
No 461
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=92.88 E-value=0.65 Score=53.74 Aligned_cols=92 Identities=17% Similarity=0.184 Sum_probs=58.4
Q ss_pred cccchHHHHHHHHHHhcc---------C---CceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCccChHH
Q 002538 157 IVKGLESTLEDVWRCLVE---------E---SAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDLQIEK 224 (911)
Q Consensus 157 ~~~Gr~~~~~~l~~~L~~---------~---~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~ 224 (911)
.|=|.++-+.+|.+-+.- . +.+-|-++|++|.|||-+|++|+.+. .- .|++|-.. +
T Consensus 673 DVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEc---sL-----~FlSVKGP----E 740 (953)
T KOG0736|consen 673 DVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATEC---SL-----NFLSVKGP----E 740 (953)
T ss_pred cccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhc---ee-----eEEeecCH----H
Confidence 355889999998887742 1 35678899999999999999999887 22 23333322 1
Q ss_pred HHHHHHHHcCCCCCccCCCCHHHHHHHHHHHhhcceEEEEEcccccc
Q 002538 225 NQEIIGKKIGLFDDSWKNKNLDERALEIFKILREKKFVLLLDDIWER 271 (911)
Q Consensus 225 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~ 271 (911)
++..- -..+++.+.+...+.=..++++|.||++++.
T Consensus 741 LLNMY-----------VGqSE~NVR~VFerAR~A~PCVIFFDELDSl 776 (953)
T KOG0736|consen 741 LLNMY-----------VGQSEENVREVFERARSAAPCVIFFDELDSL 776 (953)
T ss_pred HHHHH-----------hcchHHHHHHHHHHhhccCCeEEEecccccc
Confidence 11111 1122333333333334568999999999763
No 462
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=92.85 E-value=0.42 Score=56.70 Aligned_cols=88 Identities=20% Similarity=0.343 Sum_probs=51.7
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCC-ccChHHHHHHHHHHcCCCCCccCCCCHHHHHHHHHHH
Q 002538 177 AGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSK-DLQIEKNQEIIGKKIGLFDDSWKNKNLDERALEIFKI 255 (911)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 255 (911)
..||+++|..|+||||.+.+++... ........+..++... .....+-++...+.++.+.. ...+..++...+. .
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~-~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~--~~~~~~~l~~al~-~ 260 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARC-VAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVH--AVKDAADLRFALA-A 260 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhH-HHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCcc--ccCCHHHHHHHHH-H
Confidence 4699999999999999999988776 2122223455554332 11234556666666665432 2234555544443 3
Q ss_pred hhcceEEEEEcccc
Q 002538 256 LREKKFVLLLDDIW 269 (911)
Q Consensus 256 L~~k~~LlVlDdv~ 269 (911)
++++ =+|++|=.-
T Consensus 261 ~~~~-D~VLIDTAG 273 (767)
T PRK14723 261 LGDK-HLVLIDTVG 273 (767)
T ss_pred hcCC-CEEEEeCCC
Confidence 4444 367777664
No 463
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=92.85 E-value=0.31 Score=54.57 Aligned_cols=94 Identities=11% Similarity=0.135 Sum_probs=56.2
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhhccCCCCC--ceEEEEEeCCcc-ChHHHHHHHHHHcCCCC-----CccCCCCHH-
Q 002538 176 SAGIIGLYGMGGVGKTTLLTRINNKFLESPSDF--DCVIWVVVSKDL-QIEKNQEIIGKKIGLFD-----DSWKNKNLD- 246 (911)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f--~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~-----~~~~~~~~~- 246 (911)
+-..++|.|..|+|||||+.++.+.. ...+.+ ..++++-+++.. ...++.+.+...=.+.. ...+.....
T Consensus 140 ~GQR~gIfgg~G~GKs~L~~~ia~~~-~ad~~~~~~v~V~~~iGERgrEv~efi~~~~~~~~l~rtvvv~atsd~p~~~R 218 (458)
T TIGR01041 140 RGQKLPIFSGSGLPHNELAAQIARQA-TVRGEESEFAVVFAAMGITYEEANFFMKDFEETGALERAVVFLNLADDPAVER 218 (458)
T ss_pred cCCEEEeeCCCCCCHHHHHHHHHHhh-cccCCCCceEEEEEEccccchHHHHHHHHHHhcCCcceEEEEEECCCCCHHHH
Confidence 55689999999999999999998875 222112 156666666544 44556666654322211 001111111
Q ss_pred ----HHHHHHHHHhh---cceEEEEEccccc
Q 002538 247 ----ERALEIFKILR---EKKFVLLLDDIWE 270 (911)
Q Consensus 247 ----~~~~~l~~~L~---~k~~LlVlDdv~~ 270 (911)
-....+.++++ ++++|+++||+-.
T Consensus 219 ~~a~~~a~tiAEyfr~d~G~~VLli~DslTR 249 (458)
T TIGR01041 219 IVTPRMALTAAEYLAFEKDMHVLVILTDMTN 249 (458)
T ss_pred HHHHHHHHHHHHHHHHccCCcEEEEEcChhH
Confidence 12334566665 7889999999954
No 464
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=92.84 E-value=0.57 Score=52.05 Aligned_cols=93 Identities=20% Similarity=0.226 Sum_probs=54.0
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCccChHHHHHHHHHHcCCCCC-----ccCCCCH----
Q 002538 175 ESAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDLQIEKNQEIIGKKIGLFDD-----SWKNKNL---- 245 (911)
Q Consensus 175 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~---- 245 (911)
.....++|+|..|.|||||++.++... . ....++.....+.....+..+..+..-++... ..+....
T Consensus 154 ~~Gqri~I~G~sG~GKTtLl~~Ia~~~-~---~~~gvI~~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~r 229 (432)
T PRK06793 154 GIGQKIGIFAGSGVGKSTLLGMIAKNA-K---ADINVISLVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLR 229 (432)
T ss_pred cCCcEEEEECCCCCChHHHHHHHhccC-C---CCeEEEEeCCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHHHH
Confidence 355689999999999999999998875 2 12234433333345666665655544322110 0011111
Q ss_pred -HHHHHHHHHHh--hcceEEEEEcccccc
Q 002538 246 -DERALEIFKIL--REKKFVLLLDDIWER 271 (911)
Q Consensus 246 -~~~~~~l~~~L--~~k~~LlVlDdv~~~ 271 (911)
...+..+.+++ ++++.||++||+-..
T Consensus 230 a~~~a~~iAEyfr~~G~~VLlilDslTr~ 258 (432)
T PRK06793 230 AAKLATSIAEYFRDQGNNVLLMMDSVTRF 258 (432)
T ss_pred HHHHHHHHHHHHHHcCCcEEEEecchHHH
Confidence 11223344444 479999999999653
No 465
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=92.84 E-value=0.39 Score=54.37 Aligned_cols=40 Identities=25% Similarity=0.370 Sum_probs=30.6
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCC
Q 002538 176 SAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSK 218 (911)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~ 218 (911)
.-.++.|.|.+|+|||||+.++..... ..-..++|++...
T Consensus 93 ~GsvilI~G~pGsGKTTL~lq~a~~~a---~~g~kvlYvs~EE 132 (454)
T TIGR00416 93 PGSLILIGGDPGIGKSTLLLQVACQLA---KNQMKVLYVSGEE 132 (454)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH---hcCCcEEEEECcC
Confidence 457999999999999999999977762 2223578887554
No 466
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.81 E-value=0.58 Score=46.32 Aligned_cols=62 Identities=11% Similarity=0.207 Sum_probs=38.9
Q ss_pred HHHHHHhhcceEEEEEcccccccccccccC---CCCCCCCCCCcEEEEEcCchhhhhccCCcceEE
Q 002538 250 LEIFKILREKKFVLLLDDIWERVNLNKVGV---PLPSPQSTTASKVVFTTRFINVCGSMEAHRNFK 312 (911)
Q Consensus 250 ~~l~~~L~~k~~LlVlDdv~~~~~~~~~~~---~l~~~~~~~gs~IivTtR~~~v~~~~~~~~~~~ 312 (911)
..+.+.+--++-+.|||..++--+.+.+.. .+.. -...|+-+++.|-.+.++.....+.+|-
T Consensus 153 ~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~-lr~~~~~~liITHy~rll~~i~pD~vhv 217 (251)
T COG0396 153 NEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINA-LREEGRGVLIITHYQRLLDYIKPDKVHV 217 (251)
T ss_pred HHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHH-HhcCCCeEEEEecHHHHHhhcCCCEEEE
Confidence 345556666788999999987655443321 1110 1134666888888899988876665553
No 467
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=92.80 E-value=0.34 Score=53.83 Aligned_cols=27 Identities=33% Similarity=0.425 Sum_probs=23.5
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHhhh
Q 002538 175 ESAGIIGLYGMGGVGKTTLLTRINNKF 201 (911)
Q Consensus 175 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 201 (911)
.+-..++|+|..|+|||||++.+....
T Consensus 153 ~~GQ~igI~G~sGaGKSTLl~~I~g~~ 179 (434)
T PRK07196 153 GKGQRVGLMAGSGVGKSVLLGMITRYT 179 (434)
T ss_pred ecceEEEEECCCCCCccHHHHHHhccc
Confidence 456789999999999999999987754
No 468
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=92.80 E-value=0.096 Score=50.87 Aligned_cols=25 Identities=28% Similarity=0.336 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhh
Q 002538 177 AGIIGLYGMGGVGKTTLLTRINNKF 201 (911)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa~~v~~~~ 201 (911)
...|.|+|+.|.||||+|+.+.+..
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l 28 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQL 28 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHc
Confidence 3568999999999999999999875
No 469
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=92.78 E-value=0.13 Score=53.79 Aligned_cols=42 Identities=17% Similarity=0.233 Sum_probs=35.6
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCc
Q 002538 175 ESAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKD 219 (911)
Q Consensus 175 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~ 219 (911)
...+++.|.|.+|+|||++|.++.... ......++||+....
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~~---~~~ge~vlyvs~~e~ 62 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYEG---AREGEPVLYVSTEES 62 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHH---HhcCCcEEEEEecCC
Confidence 366899999999999999999998887 345888999987654
No 470
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=92.72 E-value=0.1 Score=51.68 Aligned_cols=25 Identities=32% Similarity=0.347 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhh
Q 002538 177 AGIIGLYGMGGVGKTTLLTRINNKF 201 (911)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa~~v~~~~ 201 (911)
..+|.|.|.+|+||||+|+.++.+.
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999998875
No 471
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=92.71 E-value=0.089 Score=50.06 Aligned_cols=22 Identities=41% Similarity=0.498 Sum_probs=20.2
Q ss_pred EEEEcCCCChHHHHHHHHHhhh
Q 002538 180 IGLYGMGGVGKTTLLTRINNKF 201 (911)
Q Consensus 180 i~I~G~gGiGKTtLa~~v~~~~ 201 (911)
|.|+|++|.||||+|+.+....
T Consensus 2 i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 6799999999999999998775
No 472
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=92.70 E-value=0.097 Score=47.20 Aligned_cols=22 Identities=41% Similarity=0.576 Sum_probs=20.3
Q ss_pred EEEEcCCCChHHHHHHHHHhhh
Q 002538 180 IGLYGMGGVGKTTLLTRINNKF 201 (911)
Q Consensus 180 i~I~G~gGiGKTtLa~~v~~~~ 201 (911)
|.|+|..|+|||||.+.+.+..
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 7899999999999999998876
No 473
>PRK00300 gmk guanylate kinase; Provisional
Probab=92.63 E-value=0.1 Score=52.55 Aligned_cols=26 Identities=31% Similarity=0.396 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhh
Q 002538 176 SAGIIGLYGMGGVGKTTLLTRINNKF 201 (911)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 201 (911)
...+|+|+|+.|+||||||+.++...
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 35689999999999999999998875
No 474
>PRK03846 adenylylsulfate kinase; Provisional
Probab=92.61 E-value=0.11 Score=51.83 Aligned_cols=27 Identities=19% Similarity=0.421 Sum_probs=24.3
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHhhh
Q 002538 175 ESAGIIGLYGMGGVGKTTLLTRINNKF 201 (911)
Q Consensus 175 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 201 (911)
.+..+|+|+|++|+||||+|+.+....
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l 48 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEAL 48 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 456799999999999999999998875
No 475
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=92.54 E-value=0.097 Score=51.68 Aligned_cols=24 Identities=33% Similarity=0.523 Sum_probs=21.4
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhh
Q 002538 178 GIIGLYGMGGVGKTTLLTRINNKF 201 (911)
Q Consensus 178 ~vi~I~G~gGiGKTtLa~~v~~~~ 201 (911)
.++.|+|+.|+|||||++.++...
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 478999999999999999997764
No 476
>PRK13975 thymidylate kinase; Provisional
Probab=92.51 E-value=0.1 Score=51.99 Aligned_cols=24 Identities=33% Similarity=0.462 Sum_probs=22.5
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhh
Q 002538 178 GIIGLYGMGGVGKTTLLTRINNKF 201 (911)
Q Consensus 178 ~vi~I~G~gGiGKTtLa~~v~~~~ 201 (911)
..|+|.|+.|+||||+|+.+.+..
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l 26 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKL 26 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999999987
No 477
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=92.50 E-value=0.13 Score=54.95 Aligned_cols=44 Identities=23% Similarity=0.261 Sum_probs=29.5
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCccChHH
Q 002538 178 GIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDLQIEK 224 (911)
Q Consensus 178 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~ 224 (911)
+++.+.|-||+||||+|.+.+-...+ + -..++-++.....++.+
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~-~--G~rtLlvS~Dpa~~L~d 45 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALAR-R--GKRTLLVSTDPAHSLSD 45 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHH-T--TS-EEEEESSTTTHHHH
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhh-C--CCCeeEeecCCCccHHH
Confidence 68899999999999999888777632 2 23355555444433333
No 478
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=92.48 E-value=0.11 Score=45.30 Aligned_cols=23 Identities=26% Similarity=0.286 Sum_probs=20.4
Q ss_pred CceEEEEEcCCCChHHHHHHHHH
Q 002538 176 SAGIIGLYGMGGVGKTTLLTRIN 198 (911)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~ 198 (911)
.-..++|+|..|.|||||++.+.
T Consensus 14 ~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 14 GKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CCEEEEEEcCCCCCHHHHHHHhh
Confidence 34689999999999999999975
No 479
>TIGR03324 alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit alpha. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 alpha subunit of this apparent second ATP synthase.
Probab=92.48 E-value=0.32 Score=54.59 Aligned_cols=90 Identities=13% Similarity=0.111 Sum_probs=55.0
Q ss_pred CceEEEEEcCCCChHHHHH-HHHHhhhccCCCCCce-EEEEEeCCcc-ChHHHHHHHHHHcCCCC-----CccCCCCHHH
Q 002538 176 SAGIIGLYGMGGVGKTTLL-TRINNKFLESPSDFDC-VIWVVVSKDL-QIEKNQEIIGKKIGLFD-----DSWKNKNLDE 247 (911)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~~f~~-~~wv~~s~~~-~~~~~~~~i~~~l~~~~-----~~~~~~~~~~ 247 (911)
+-..++|.|..|+|||||| .++.+.. .-+. ++++-+++.. ...++.+.+...=.+.. ...+......
T Consensus 161 rGQR~~Ifg~~g~GKT~Lal~~I~~q~-----~~dv~~V~~~IGeR~rev~e~i~~l~~~~~l~~tvvV~atsd~p~~~r 235 (497)
T TIGR03324 161 RGQRELILGDRQTGKTAIAIDTILNQK-----GRNVLCIYCAIGQRASAVAKVVANLREHGAMDYTIVVVTEGNDPPGLQ 235 (497)
T ss_pred cCCEEEeecCCCCCHHHHHHHHHHHhc-----CCCcEEEEEEeccCcHHHHHHHHHhhhcCCcceeEEEEeCCCCCHHHH
Confidence 5568999999999999997 5677653 2343 6788887764 45566666655322211 0001111111
Q ss_pred -----HHHHHHHHh--hcceEEEEEccccc
Q 002538 248 -----RALEIFKIL--REKKFVLLLDDIWE 270 (911)
Q Consensus 248 -----~~~~l~~~L--~~k~~LlVlDdv~~ 270 (911)
....+.+++ +++++|||+||+-.
T Consensus 236 ~~ap~~a~aiAEyfrd~G~~VLlv~DdlTr 265 (497)
T TIGR03324 236 YIAPYAATSIGEHFMEQGRDVLIVYDDLTQ 265 (497)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEEcChhH
Confidence 122345555 58999999999954
No 480
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=92.39 E-value=0.98 Score=49.04 Aligned_cols=99 Identities=23% Similarity=0.288 Sum_probs=52.3
Q ss_pred HHHHHHHhccC----CceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCC-ccChHHHHHHHHHHcCCCCCc
Q 002538 165 LEDVWRCLVEE----SAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSK-DLQIEKNQEIIGKKIGLFDDS 239 (911)
Q Consensus 165 ~~~l~~~L~~~----~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~~ 239 (911)
...+..++.++ +.++|+++|+.|+||||-..+++.++ .....=..+..++... .....+-++.-++-++.+-.
T Consensus 187 l~~~~~~~~~~~~~~~~~vi~LVGPTGVGKTTTlAKLAar~-~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~- 264 (407)
T COG1419 187 LRKLLLSLIENLIVEQKRVIALVGPTGVGKTTTLAKLAARY-VMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLE- 264 (407)
T ss_pred HHHHHHhhccccccccCcEEEEECCCCCcHHHHHHHHHHHH-HhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceE-
Confidence 34444444443 47899999999999986555555554 2123334566665432 22344455566666666542
Q ss_pred cCCCCHHHHHHHHHHHhhcceEEEEEccc
Q 002538 240 WKNKNLDERALEIFKILREKKFVLLLDDI 268 (911)
Q Consensus 240 ~~~~~~~~~~~~l~~~L~~k~~LlVlDdv 268 (911)
...+..+....+.. ++++. +|.+|-+
T Consensus 265 -vv~~~~el~~ai~~-l~~~d-~ILVDTa 290 (407)
T COG1419 265 -VVYSPKELAEAIEA-LRDCD-VILVDTA 290 (407)
T ss_pred -EecCHHHHHHHHHH-hhcCC-EEEEeCC
Confidence 22344444444332 23332 3444544
No 481
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=92.31 E-value=0.38 Score=53.35 Aligned_cols=91 Identities=21% Similarity=0.265 Sum_probs=50.3
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCc-cChHHHHHHHHHHcCCCC-----CccCCCCHH--
Q 002538 175 ESAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKD-LQIEKNQEIIGKKIGLFD-----DSWKNKNLD-- 246 (911)
Q Consensus 175 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~-----~~~~~~~~~-- 246 (911)
.+-..++|+|..|+|||||++.+.+.. . . +..+..-+++. -...+..+..+.+-++.. ...+.....
T Consensus 135 ~~Gqri~I~G~sG~GKTtLl~~i~~~~-~--~--~~gvi~~~Ger~~ev~e~~~~~l~~~~~~~~v~v~~tsd~~~~~r~ 209 (413)
T TIGR03497 135 GKGQRVGIFAGSGVGKSTLLGMIARNA-K--A--DINVIALIGERGREVRDFIEKDLGEEGLKRSVVVVATSDQPALMRL 209 (413)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC-C--C--CeEEEEEEccchHHHHHHHHHHhcccccceEEEEEECCCCCHHHHH
Confidence 456789999999999999999888764 1 1 22222233332 234444444333211111 011111111
Q ss_pred ---HHHHHHHHHh--hcceEEEEEccccc
Q 002538 247 ---ERALEIFKIL--REKKFVLLLDDIWE 270 (911)
Q Consensus 247 ---~~~~~l~~~L--~~k~~LlVlDdv~~ 270 (911)
.....+.+++ +++++|+++||+-.
T Consensus 210 ~~~~~a~tiAEyfr~~G~~Vll~~Dsltr 238 (413)
T TIGR03497 210 KAAFTATAIAEYFRDQGKDVLLMMDSVTR 238 (413)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEEcCcHH
Confidence 2223345555 57999999999954
No 482
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=92.29 E-value=0.13 Score=47.95 Aligned_cols=25 Identities=32% Similarity=0.497 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhh
Q 002538 177 AGIIGLYGMGGVGKTTLLTRINNKF 201 (911)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa~~v~~~~ 201 (911)
.+++.|+|.+|+||||+.+.+....
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l 28 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL 28 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH
Confidence 5799999999999999998876654
No 483
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=92.29 E-value=0.091 Score=50.60 Aligned_cols=22 Identities=27% Similarity=0.614 Sum_probs=19.8
Q ss_pred EEEEcCCCChHHHHHHHHHhhh
Q 002538 180 IGLYGMGGVGKTTLLTRINNKF 201 (911)
Q Consensus 180 i~I~G~gGiGKTtLa~~v~~~~ 201 (911)
|.|+|++|+||||+|+.+.+..
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999998875
No 484
>PRK14527 adenylate kinase; Provisional
Probab=92.28 E-value=0.12 Score=51.16 Aligned_cols=26 Identities=23% Similarity=0.400 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhh
Q 002538 176 SAGIIGLYGMGGVGKTTLLTRINNKF 201 (911)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 201 (911)
...+|.|+|.+|.||||+|+.+++..
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~ 30 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQEL 30 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998776
No 485
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=92.27 E-value=0.15 Score=48.36 Aligned_cols=34 Identities=21% Similarity=0.398 Sum_probs=25.8
Q ss_pred EEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEE
Q 002538 179 IIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWV 214 (911)
Q Consensus 179 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv 214 (911)
|++|+|+.|+||||++..+.... + ...+...+.-
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l-~-~~G~~V~viK 34 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKAL-K-ARGYRVATIK 34 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH-H-hcCCeEEEEe
Confidence 58899999999999999999987 2 2345444433
No 486
>CHL00060 atpB ATP synthase CF1 beta subunit
Probab=92.25 E-value=0.38 Score=53.97 Aligned_cols=94 Identities=21% Similarity=0.296 Sum_probs=58.7
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCcc-ChHHHHHHHHHHcCCCCC------------ccC
Q 002538 175 ESAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDL-QIEKNQEIIGKKIGLFDD------------SWK 241 (911)
Q Consensus 175 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~------------~~~ 241 (911)
.+-..++|.|..|+|||||+.++..... +.+-+.++++-+++.. ...++.+.+...-....+ ..+
T Consensus 159 gkGQR~gIfgg~GvGKs~L~~~~~~~~~--~~~~dv~V~~lIGERgrEv~efi~~~~~~~~~~~~~~~~~rsvvv~atsd 236 (494)
T CHL00060 159 RRGGKIGLFGGAGVGKTVLIMELINNIA--KAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMN 236 (494)
T ss_pred ccCCEEeeecCCCCChhHHHHHHHHHHH--HhcCCeEEEEEeccCchHHHHHHHHHHhcCccccCcccccceEEEEECCC
Confidence 3557899999999999999999887741 2223778888887764 445666666552111100 001
Q ss_pred CCCHH-----HHHHHHHHHhh--cc-eEEEEEccccc
Q 002538 242 NKNLD-----ERALEIFKILR--EK-KFVLLLDDIWE 270 (911)
Q Consensus 242 ~~~~~-----~~~~~l~~~L~--~k-~~LlVlDdv~~ 270 (911)
..... .....+.++++ ++ ++||++||+-.
T Consensus 237 ~p~~~R~~a~~~A~tiAEyfrd~g~~~VLll~DslTR 273 (494)
T CHL00060 237 EPPGARMRVGLTALTMAEYFRDVNKQDVLLFIDNIFR 273 (494)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCCEEEEcccchH
Confidence 11111 23344667774 44 99999999954
No 487
>PRK13946 shikimate kinase; Provisional
Probab=92.22 E-value=0.11 Score=51.03 Aligned_cols=25 Identities=28% Similarity=0.436 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhh
Q 002538 177 AGIIGLYGMGGVGKTTLLTRINNKF 201 (911)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa~~v~~~~ 201 (911)
.+.|.++|+.|+||||+++.+.+..
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~L 34 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATML 34 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 3579999999999999999999886
No 488
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=92.20 E-value=0.4 Score=53.21 Aligned_cols=91 Identities=23% Similarity=0.257 Sum_probs=51.6
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCcc-ChHHHHHHHHHHcCCCC-----CccCCCCHH--
Q 002538 175 ESAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDL-QIEKNQEIIGKKIGLFD-----DSWKNKNLD-- 246 (911)
Q Consensus 175 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~-----~~~~~~~~~-- 246 (911)
.+...++|+|..|+|||||++.+.+.. . .+..+.+.+.... ...++.+.....-.+.. ...+.....
T Consensus 135 ~~Gq~~~I~G~sG~GKTtLl~~I~~~~---~--~~~~vi~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~tsd~~~~~r~ 209 (411)
T TIGR03496 135 GRGQRMGIFAGSGVGKSTLLGMMARYT---E--ADVVVVGLIGERGREVKEFIEDILGEEGLARSVVVAATADESPLMRL 209 (411)
T ss_pred ecCcEEEEECCCCCCHHHHHHHHhcCC---C--CCEEEEEEEecChHHHHHHHHHHhhCCCcceEEEEEECCCCCHHHHH
Confidence 355689999999999999999888764 1 2334445554432 34444444443211111 001111111
Q ss_pred ---HHHHHHHHHh--hcceEEEEEccccc
Q 002538 247 ---ERALEIFKIL--REKKFVLLLDDIWE 270 (911)
Q Consensus 247 ---~~~~~l~~~L--~~k~~LlVlDdv~~ 270 (911)
.....+.+++ +++++|+++||+-.
T Consensus 210 ~a~~~a~tiAEyfr~~G~~Vll~~Dsltr 238 (411)
T TIGR03496 210 RAAFYATAIAEYFRDQGKDVLLLMDSLTR 238 (411)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEEeChHH
Confidence 1223344555 58999999999854
No 489
>PF13245 AAA_19: Part of AAA domain
Probab=92.19 E-value=0.34 Score=39.54 Aligned_cols=25 Identities=28% Similarity=0.307 Sum_probs=18.2
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhh
Q 002538 176 SAGIIGLYGMGGVGKTTLLTRINNK 200 (911)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~ 200 (911)
+.+++.|.|.+|.|||+++......
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~ 33 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAE 33 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4567888999999999555444443
No 490
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.19 E-value=0.094 Score=28.88 Aligned_cols=12 Identities=33% Similarity=0.540 Sum_probs=3.5
Q ss_pred CCEEeccCCCcC
Q 002538 588 LQLIDLSYTSIR 599 (911)
Q Consensus 588 L~~L~L~~~~i~ 599 (911)
|+.|++++|+++
T Consensus 3 L~~L~l~~n~L~ 14 (17)
T PF13504_consen 3 LRTLDLSNNRLT 14 (17)
T ss_dssp -SEEEETSS--S
T ss_pred cCEEECCCCCCC
Confidence 333333333333
No 491
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=92.12 E-value=0.14 Score=51.58 Aligned_cols=24 Identities=21% Similarity=0.326 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhh
Q 002538 177 AGIIGLYGMGGVGKTTLLTRINNK 200 (911)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa~~v~~~ 200 (911)
.+++.|+|..|.||||+.+.+...
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~ 52 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALI 52 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHH
Confidence 488999999999999999998743
No 492
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=92.07 E-value=0.87 Score=48.04 Aligned_cols=53 Identities=19% Similarity=0.155 Sum_probs=37.0
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCccChHHHHHHHHHH
Q 002538 176 SAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDLQIEKNQEIIGKK 232 (911)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 232 (911)
...++.|.|.+|+||||++.+++.... ..+-..++|++... +..++...+...
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~~--~~~g~~vl~iS~E~--~~~~~~~r~~~~ 81 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDLI--TQHGVRVGTISLEE--PVVRTARRLLGQ 81 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH--HhcCceEEEEEccc--CHHHHHHHHHHH
Confidence 345888999999999999999887752 22245688887655 344555555443
No 493
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=92.07 E-value=0.12 Score=49.87 Aligned_cols=21 Identities=33% Similarity=0.466 Sum_probs=17.4
Q ss_pred EEEEcCCCChHHHHHHHHHhh
Q 002538 180 IGLYGMGGVGKTTLLTRINNK 200 (911)
Q Consensus 180 i~I~G~gGiGKTtLa~~v~~~ 200 (911)
|+|.|..|+|||||++.+...
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 789999999999999999865
No 494
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=92.02 E-value=0.12 Score=49.70 Aligned_cols=22 Identities=45% Similarity=0.641 Sum_probs=19.5
Q ss_pred EEEEcCCCChHHHHHHHHHhhh
Q 002538 180 IGLYGMGGVGKTTLLTRINNKF 201 (911)
Q Consensus 180 i~I~G~gGiGKTtLa~~v~~~~ 201 (911)
|.|.|.+|+|||||++.+++..
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 6799999999999999999886
No 495
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=92.02 E-value=0.18 Score=55.01 Aligned_cols=92 Identities=17% Similarity=0.163 Sum_probs=52.5
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCccChHHHHHHHHHHcCCCCCccCCCCHHHHHHHHHHH
Q 002538 176 SAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDLQIEKNQEIIGKKIGLFDDSWKNKNLDERALEIFKI 255 (911)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 255 (911)
....|.|.|..|.||||+.+.+.+.. .......++.- .+.. +...... ..+-...+ ...+.......+...
T Consensus 121 ~~g~ili~G~tGSGKTT~l~al~~~i---~~~~~~~i~ti-Edp~--E~~~~~~-~~~i~q~e--vg~~~~~~~~~l~~~ 191 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTLASMIDYI---NKNAAGHIITI-EDPI--EYVHRNK-RSLINQRE--VGLDTLSFANALRAA 191 (343)
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHhh---CcCCCCEEEEE-cCCh--hhhccCc-cceEEccc--cCCCCcCHHHHHHHh
Confidence 45789999999999999999988765 23334444432 2211 1100000 00000000 011122345567778
Q ss_pred hhcceEEEEEccccccccccc
Q 002538 256 LREKKFVLLLDDIWERVNLNK 276 (911)
Q Consensus 256 L~~k~~LlVlDdv~~~~~~~~ 276 (911)
|+...=.|++|++.+.+.+..
T Consensus 192 lr~~pd~i~vgEird~~~~~~ 212 (343)
T TIGR01420 192 LREDPDVILIGEMRDLETVEL 212 (343)
T ss_pred hccCCCEEEEeCCCCHHHHHH
Confidence 888999999999987655543
No 496
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=92.01 E-value=0.29 Score=48.76 Aligned_cols=23 Identities=35% Similarity=0.642 Sum_probs=21.7
Q ss_pred EEEEEcCCCChHHHHHHHHHhhh
Q 002538 179 IIGLYGMGGVGKTTLLTRINNKF 201 (911)
Q Consensus 179 vi~I~G~gGiGKTtLa~~v~~~~ 201 (911)
+|+|.|+.|+||||+++.+.+..
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l 24 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERL 24 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999887
No 497
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=91.96 E-value=0.23 Score=52.88 Aligned_cols=46 Identities=26% Similarity=0.342 Sum_probs=40.5
Q ss_pred ccccchHHHHHHHHHHhcc------CCceEEEEEcCCCChHHHHHHHHHhhh
Q 002538 156 AIVKGLESTLEDVWRCLVE------ESAGIIGLYGMGGVGKTTLLTRINNKF 201 (911)
Q Consensus 156 ~~~~Gr~~~~~~l~~~L~~------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 201 (911)
..++|.++.++++++.+.. .+-+|+.++|+.|.||||||..+-+-.
T Consensus 61 ~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~l 112 (358)
T PF08298_consen 61 DEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGL 112 (358)
T ss_pred ccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3577999999999999864 366899999999999999999998876
No 498
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=91.95 E-value=0.46 Score=53.23 Aligned_cols=27 Identities=37% Similarity=0.543 Sum_probs=23.3
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHhhh
Q 002538 175 ESAGIIGLYGMGGVGKTTLLTRINNKF 201 (911)
Q Consensus 175 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 201 (911)
.+...++|+|..|+|||||++.+....
T Consensus 161 ~~Gq~~~I~G~sG~GKStLl~~I~~~~ 187 (440)
T TIGR01026 161 GKGQRIGIFAGSGVGKSTLLGMIARNT 187 (440)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 355689999999999999999988764
No 499
>PRK13948 shikimate kinase; Provisional
Probab=91.94 E-value=0.15 Score=49.75 Aligned_cols=26 Identities=19% Similarity=0.339 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhh
Q 002538 176 SAGIIGLYGMGGVGKTTLLTRINNKF 201 (911)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 201 (911)
....|.++|+.|+||||+++.+.+..
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~l 34 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRAL 34 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 45688999999999999999998876
No 500
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=91.93 E-value=0.57 Score=56.20 Aligned_cols=101 Identities=20% Similarity=0.260 Sum_probs=66.9
Q ss_pred cccchHHHHHHHHHHhccC--------CceEEEEEcCCCChHHHHHHHHHhhhccCCCCCceEEEEEeCCccChHHHHHH
Q 002538 157 IVKGLESTLEDVWRCLVEE--------SAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDCVIWVVVSKDLQIEKNQEI 228 (911)
Q Consensus 157 ~~~Gr~~~~~~l~~~L~~~--------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 228 (911)
.|+|.++.+..|-+.+... ..-.+.+.|+.|+|||-||++++.-. .+..+..+-++.|.- .+
T Consensus 563 ~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~---Fgse~~~IriDmse~------~e- 632 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYV---FGSEENFIRLDMSEF------QE- 632 (898)
T ss_pred hccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHH---cCCccceEEechhhh------hh-
Confidence 4678888888888888641 34578899999999999999998876 555556666654432 22
Q ss_pred HHHHcCCCCCccCCCCHHHHHHHHHHHhhcceE-EEEEcccccc
Q 002538 229 IGKKIGLFDDSWKNKNLDERALEIFKILREKKF-VLLLDDIWER 271 (911)
Q Consensus 229 i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~k~~-LlVlDdv~~~ 271 (911)
+.+..+.+. .+ --.+....|.+.++.++| +|+||||+..
T Consensus 633 vskligsp~-gy---vG~e~gg~LteavrrrP~sVVLfdeIEkA 672 (898)
T KOG1051|consen 633 VSKLIGSPP-GY---VGKEEGGQLTEAVKRRPYSVVLFEEIEKA 672 (898)
T ss_pred hhhccCCCc-cc---ccchhHHHHHHHHhcCCceEEEEechhhc
Confidence 333323221 11 112233477788888887 6777999764
Done!