Query 002538
Match_columns 911
No_of_seqs 433 out of 4402
Neff 9.8
Searched_HMMs 29240
Date Tue Mar 26 16:27:35 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002538.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1257-1261//hhsearch_pdb/002538hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 1.0 1 1 402.9 20.6 315 155-493 127-472 (549)
2 3sfz_A APAF-1, apoptotic pepti 1.0 1 1 346.5 26.0 311 155-492 123-452 (1249)
3 1vt4_I APAF-1 related killer D 1.0 1 1 331.1 14.0 285 157-485 129-436 (1221)
4 1z6t_A APAF-1, apoptotic prote 1.0 1 1 297.5 23.4 305 156-490 124-450 (591)
5 4ecn_A Leucine-rich repeat pro 1.0 1 1 208.6 20.4 332 509-881 440-842 (876)
6 4eco_A Uncharacterized protein 1.0 1 1 205.8 17.8 347 512-882 201-603 (636)
7 3rgz_A Protein brassinosteroid 1.0 1 1 204.2 19.3 93 756-860 630-723 (768)
8 3vq2_A TLR4, TOLL-like recepto 1.0 1 1 199.2 19.4 129 517-646 32-165 (606)
9 2id5_A Lingo-1, leucine rich r 1.0 1 1 199.1 26.5 154 517-686 32-189 (477)
10 4fmz_A Internalin; leucine ric 1.0 1 1 198.0 22.0 301 513-873 40-340 (347)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=1.00 E-value=1 Score=402.93 Aligned_cols=315 Identities=13% Similarity=0.112 Sum_probs=258.2
Q ss_pred CCCCCCHHHHHHHHHHHHCCC---CCEEEEEECCCCCHHHHHHHHHHH--HHCCCCCCCCEEEEEEECCCC--CHHHHHH
Q ss_conf 100134278999999996159---940999994898709999999983--002599999569999948765--9689999
Q 002538 155 EAIVKGLESTLEDVWRCLVEE---SAGIIGLYGMGGVGKTTLLTRINN--KFLESPSDFDCVIWVVVSKDL--QIEKNQE 227 (911)
Q Consensus 155 ~~~~~gr~~~~~~i~~~L~~~---~~~vi~I~G~gGiGKTtLa~~v~~--~~~~~~~~f~~~~wv~~s~~~--~~~~~~~ 227 (911)
.+..+||+.++++|.++|..+ ..++|+|+||||+||||||+++|+ +. ++..+|+.++|+++++.. +...++.
T Consensus 127 ~~~~~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~-~~~~~F~~~~wv~vs~~~~~~~~~~~~ 205 (549)
T 2a5y_B 127 QMTCYIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQ-LIGINYDSIVWLKDSGTAPKSTFDLFT 205 (549)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSS-TBTTTBSEEEEEECCCCSTTHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHH-HHHCCCCCEEEEEECCCCCCCHHHHHH
T ss_conf 7760784179999999872515789628999869999889999999984069-874669957999978987879999999
Q ss_pred HHHHHCCCCCC-----CCCCCCHHHHHHHHHHHHHCC-EEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCHHH
Q ss_conf 99988099997-----667789999999999996115-089998453122331212677899999998299998184555
Q 002538 228 IIGKKIGLFDD-----SWKNKNLDERALEIFKILREK-KFVLLLDDIWERVNLNKVGVPLPSPQSTTASKVVFTTRFINV 301 (911)
Q Consensus 228 ~i~~~l~~~~~-----~~~~~~~~~~~~~l~~~l~~k-~~LlVlDdv~~~~~~~~l~~~l~~~~~~~gs~IiiTtR~~~v 301 (911)
.|+.+++.... .....+...+...+.+.|+++ |+||||||||+..++ .+ + ...||+||||||+..+
T Consensus 206 ~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~----~---~~~gs~ilvTTR~~~v 277 (549)
T 2a5y_B 206 DILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RW----A---QELRLRCLVTTRDVEI 277 (549)
T ss_dssp HHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HH----H---HHTTCEEEEEESBGGG
T ss_pred HHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHH-CC----C---CCCCCEEEEECCCHHH
T ss_conf 99999853755345555331469999999999976898489999799971441-54----3---2699889997497799
Q ss_pred HHCCC-CCCEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 30258-75328705899899999999982784337995479999999999099605899998662169997899999999
Q 002538 302 CGSME-AHRNFKVECLTEKHAWELFQMKVGEETLKSHPHVFELAQVVAKECGGLPLALITIGRAMAYKKTREEWKYAIEV 380 (911)
Q Consensus 302 ~~~~~-~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~~~~~~w~~~~~~ 380 (911)
+..++ ...+|++++|+.++||+||.+.++... ..+.+++++.+|+++|+|+||||+++|+.++.+ .|+.. ..
T Consensus 278 ~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~--~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~----~w~~~-~~ 350 (549)
T 2a5y_B 278 SNAASQTCEFIEVTSLEIDECYDFLEAYGMPMP--VGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK----TFEKM-AQ 350 (549)
T ss_dssp GGGCCSCEEEEECCCCCHHHHHHHHHHTSCCCC----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS----SHHHH-HH
T ss_pred HHHCCCCCEEEECCCCCHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCC----HHHHH-HH
T ss_conf 997088973898999898999999998744899--855689999999999599839999999984434----48999-87
Q ss_pred HHHCCCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHH-----------HHHCCCCCCCCCHHHHHHHHHHC--CCCCCCC-
Q ss_conf 970321237971101001000347898024567997-----------75048887545768899998945--9756775-
Q 002538 381 LRRSTFELAGLEKEVYPLLKFSYDCLPNDIIRSCFL-----------YCCLYPEDWNTFKRNLIDCWIGE--GFLEEND- 446 (911)
Q Consensus 381 l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~c~l-----------~~~~fp~~~~i~~~~li~~w~ae--g~i~~~~- 446 (911)
+....+... ...+..++.+||++||+ ++|.||+ |||+||+++.|+ ++.|+|+ ||+...+
T Consensus 351 l~~~l~~~~--~~~i~~~l~~Sy~~L~~-~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~ 423 (549)
T 2a5y_B 351 LNNKLESRG--LVGVECITPYSYKSLAM-ALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEE 423 (549)
T ss_dssp HHHHHHHHC--SSTTCCCSSSSSSSHHH-HHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------
T ss_pred HHHHHHCCC--HHHHHHHHHCCCCCCCH-HHHHHHHCCCHHHHHHHHHEEEECCCCEEE----EEEEEEECCCEECCCCC
T ss_conf 578761364--77789897516202267-999997526522336743235608997666----53311013550026778
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCC---CCCCEEHHHHHHHHHHHHHHHHH
Q ss_conf 111012276899999983021002---79906356999999999997641
Q 002538 447 RFGAHNQGYYIVGTLVHACLLEEV---EDDKVKMHDVIRDMALWIASEIE 493 (911)
Q Consensus 447 ~~~~~~~~~~~~~~L~~~~ll~~~---~~~~~~mHdlv~~~~~~i~~~~~ 493 (911)
....++.++ |+++|+++||++.. ...+|+|||++|+++++++.+..
T Consensus 424 ~~~~~~~~~-~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~ 472 (549)
T 2a5y_B 424 EQLDDEVAD-RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQT 472 (549)
T ss_dssp CCCTHHHHH-HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHH
T ss_pred CCCHHHHHH-HHHHHHHCCCEEEECCCCCEEEEECHHHHHHHHHHHHHHH
T ss_conf 999999999-9999987588367147980499967699999999988989
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=1.00 E-value=1 Score=346.54 Aligned_cols=311 Identities=20% Similarity=0.255 Sum_probs=251.4
Q ss_pred CCCCCCHHHHHHHHHHHHCC--CCCEEEEEECCCCCHHHHHHHHHHHHHCCCCC-CCCEEEEEEECCCCC--HHHHHHHH
Q ss_conf 10013427899999999615--99409999948987099999999830025999-995699999487659--68999999
Q 002538 155 EAIVKGLESTLEDVWRCLVE--ESAGIIGLYGMGGVGKTTLLTRINNKFLESPS-DFDCVIWVVVSKDLQ--IEKNQEII 229 (911)
Q Consensus 155 ~~~~~gr~~~~~~i~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-~f~~~~wv~~s~~~~--~~~~~~~i 229 (911)
...++||+++++++.++|.. ++.++|+|+||||+||||||+++|++...... .++.++|+++++..+ ....+..+
T Consensus 123 ~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 202 (1249)
T 3sfz_A 123 PVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNL 202 (1249)
T ss_dssp CSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHHHHH
T ss_pred CCEECCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHCCHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 86412579999999999861358877799991898888899999860756788627881799997885726799999999
Q ss_pred HHHCCCCCC--CCCCCCHHHHHHHHHHHHHCC--EEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHC-
Q ss_conf 988099997--667789999999999996115--089998453122331212677899999998299998184555302-
Q 002538 230 GKKIGLFDD--SWKNKNLDERALEIFKILREK--KFVLLLDDIWERVNLNKVGVPLPSPQSTTASKVVFTTRFINVCGS- 304 (911)
Q Consensus 230 ~~~l~~~~~--~~~~~~~~~~~~~l~~~l~~k--~~LlVlDdv~~~~~~~~l~~~l~~~~~~~gs~IiiTtR~~~v~~~- 304 (911)
+..+..... .....+.++....++..+.++ |+||||||||+..+|..+ ++|++||||||++.++..
T Consensus 203 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~---------~~~~~ilvTtR~~~~~~~~ 273 (1249)
T 3sfz_A 203 CMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF---------DNQCQILLTTRDKSVTDSV 273 (1249)
T ss_dssp HHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT---------CSSCEEEEEESSTTTTTTC
T ss_pred HHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHH---------CCCCEEEEECCCHHHHHHH
T ss_conf 9986553033347887778999999999735678789999567997788763---------6897899992778998763
Q ss_pred CCCCCEEECCC-CCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 58753287058-99899999999982784337995479999999999099605899998662169997899999999970
Q 002538 305 MEAHRNFKVEC-LTEKHAWELFQMKVGEETLKSHPHVFELAQVVAKECGGLPLALITIGRAMAYKKTREEWKYAIEVLRR 383 (911)
Q Consensus 305 ~~~~~~~~l~~-L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~~~~~~w~~~~~~l~~ 383 (911)
+.....+++.+ |+++++++||...++... +.+.+.+.+|+++|+|+||||+++|++++.+. ..|..+++.+..
T Consensus 274 ~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~----~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~~~~l~~l~~ 347 (1249)
T 3sfz_A 274 MGPKHVVPVESGLGREKGLEILSLFVNMKK----EDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRWAYYLRQLQN 347 (1249)
T ss_dssp CSCBCCEECCSSCCHHHHHHHHHHHHTSCS----TTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHCCCH----HHCCHHHHHHHHHHCCCHHHHHHHHHHHHCCH--HHHHHHHHHHHH
T ss_conf 488437982588887889999998657981----34838899999984997799999999862480--579999999865
Q ss_pred CCCCCC-----CCCHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH
Q ss_conf 321237-----971101001000347898024567997750488875457688999989459756775111012276899
Q 002538 384 STFELA-----GLEKEVYPLLKFSYDCLPNDIIRSCFLYCCLYPEDWNTFKRNLIDCWIGEGFLEENDRFGAHNQGYYIV 458 (911)
Q Consensus 384 ~~~~~~-----~~~~~i~~~l~~sy~~L~~~~~k~c~l~~~~fp~~~~i~~~~li~~w~aeg~i~~~~~~~~~~~~~~~~ 458 (911)
..+..- ...+.+..++.+||+.|++ +.|.||+||++||+++.|++..++.+|.++ .+.++.++
T Consensus 348 ~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~-~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~-----------~~~~~~~l 415 (1249)
T 3sfz_A 348 KQFKRIRKSSSYDYEALDEAMSISVEMLRE-DIKDYYTDLSILQKDVKVPTKVLCVLWDLE-----------TEEVEDIL 415 (1249)
T ss_dssp CCCCCSSCTTCTTHHHHHHHHHHHHHTSCT-TTHHHHHHGGGSCTTCCEEHHHHHHHHTCC-----------HHHHHHHH
T ss_pred HHHHHCCCCCCCCHHHHHHHHHHHHHHCCH-HHHHHHHHHCCCCCCCEECHHHHHHHHCCC-----------HHHHHHHH
T ss_conf 044303465564467799999989986799-999999972813799751899999885898-----------88999999
Q ss_pred HHHHHHHCCCCCCCC---CEEHHHHHHHHHHHHHHHH
Q ss_conf 999983021002799---0635699999999999764
Q 002538 459 GTLVHACLLEEVEDD---KVKMHDVIRDMALWIASEI 492 (911)
Q Consensus 459 ~~L~~~~ll~~~~~~---~~~mHdlv~~~~~~i~~~~ 492 (911)
++|+++||++....+ .|+|||++|++++..+.++
T Consensus 416 ~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 416 QEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp HHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred HHHHHCCCEEEECCCCCEEEEECHHHHHHHHHHHHHH
T ss_conf 9997446338963798118996689999987450678
No 3
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=1.00 E-value=1 Score=331.11 Aligned_cols=285 Identities=17% Similarity=0.204 Sum_probs=226.9
Q ss_pred CCCCHHHHHHHHHHHHCC-CCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCE-EEEEEECCCCCHHHHHHHHHHHCC
Q ss_conf 013427899999999615-994099999489870999999998300259999956-999994876596899999998809
Q 002538 157 IVKGLESTLEDVWRCLVE-ESAGIIGLYGMGGVGKTTLLTRINNKFLESPSDFDC-VIWVVVSKDLQIEKNQEIIGKKIG 234 (911)
Q Consensus 157 ~~~gr~~~~~~i~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~-~~wv~~s~~~~~~~~~~~i~~~l~ 234 (911)
..+||+.+++++.++|.. +..++|+|+||||+||||||+++|++. ++..+|+. ++|+++++.++...++..+...++
T Consensus 129 ~~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~-rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~ 207 (1221)
T 1vt4_I 129 YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSY-KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLY 207 (1221)
T ss_dssp SCCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHC-HHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHH-HHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 7789289999999997435897189997699966799999999714-988748993899982899999999999999986
Q ss_pred CCC---C-CC-----CCCCHHHHHHHHHHHH---HCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHH
Q ss_conf 999---7-66-----7789999999999996---1150899984531223312126778999999982999981845553
Q 002538 235 LFD---D-SW-----KNKNLDERALEIFKIL---REKKFVLLLDDIWERVNLNKVGVPLPSPQSTTASKVVFTTRFINVC 302 (911)
Q Consensus 235 ~~~---~-~~-----~~~~~~~~~~~l~~~l---~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~~~gs~IiiTtR~~~v~ 302 (911)
... . .. ...+.+.....+...+ .++|+||||||||+...|+.+. .||+||||||++.++
T Consensus 208 ~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~---------pGSRILVTTRd~~Va 278 (1221)
T 1vt4_I 208 QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN---------LSCKILLTTRFKQVT 278 (1221)
T ss_dssp HHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH---------SSCCEEEECSCSHHH
T ss_pred HCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHC---------CCEEEEEECCCHHHH
T ss_conf 22721022001346799999999999999998504788799871868189998647---------982999944373799
Q ss_pred HCCCCCCEEECC------CCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCC-CCHHHHH
Q ss_conf 025875328705------899899999999982784337995479999999999099605899998662169-9978999
Q 002538 303 GSMEAHRNFKVE------CLTEKHAWELFQMKVGEETLKSHPHVFELAQVVAKECGGLPLALITIGRAMAYK-KTREEWK 375 (911)
Q Consensus 303 ~~~~~~~~~~l~------~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~-~~~~~w~ 375 (911)
..+.....+.++ +|+.+|||+||.+..+.. ..++..++ |+|+||||+++|+.|+.+ .+...|.
T Consensus 279 ~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~-------~eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~ 348 (1221)
T 1vt4_I 279 DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR-------PQDLPREV---LTTNPRRLSIIAESIRDGLATWDNWK 348 (1221)
T ss_dssp HHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHHCCC-------TTTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHH
T ss_pred HHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCC-------HHHHHHHH---HCCCHHHHHHHHHHHHCCCCCHHHHH
T ss_conf 866897089946865568969999999999974998-------89999999---69899999999999848899799986
Q ss_pred HHHHHHHHCCCCCCCCCHHHCCCCCCCCCCCCHHHH-HHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHH
Q ss_conf 999999703212379711010010003478980245-6799775048887545768899998945975677511101227
Q 002538 376 YAIEVLRRSTFELAGLEKEVYPLLKFSYDCLPNDII-RSCFLYCCLYPEDWNTFKRNLIDCWIGEGFLEENDRFGAHNQG 454 (911)
Q Consensus 376 ~~~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~-k~c~l~~~~fp~~~~i~~~~li~~w~aeg~i~~~~~~~~~~~~ 454 (911)
.. ....+..++.+||+.||+ +. |.||++||+||+++.|+.+.++.+|+++| ++.+
T Consensus 349 ~~-------------~~~~I~aaLelSYd~Lp~-eelK~cFL~LAIFPed~~I~~elLa~LW~aeG----------eedA 404 (1221)
T 1vt4_I 349 HV-------------NCDKLTTIIESSLNVLEP-AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI----------KSDV 404 (1221)
T ss_dssp HC-------------SCHHHHHHHHHHHHHSCT-THHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC----------SHHH
T ss_pred CC-------------CHHHHHHHHHHHHHHCCH-HHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCC----------HHHH
T ss_conf 69-------------861899999999984889-99999999971779999877999998766778----------8999
Q ss_pred HHHHHHHHHHHCCCCC-CCCCEEHHHHHHHHH
Q ss_conf 6899999983021002-799063569999999
Q 002538 455 YYIVGTLVHACLLEEV-EDDKVKMHDVIRDMA 485 (911)
Q Consensus 455 ~~~~~~L~~~~ll~~~-~~~~~~mHdlv~~~~ 485 (911)
..++++|+++||++.. ....|+|||++++++
T Consensus 405 e~~L~eLvdRSLLq~d~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 405 MVVVNKLHKYSLVEKQPKESTISIPSIYLELK 436 (1221)
T ss_dssp HHHHHHHHTSSSSSBCSSSSEEBCCCHHHHHH
T ss_pred HHHHHHHHHHCCEEEECCCCEEEEHHHHHHHH
T ss_conf 99999999619889868999898609999985
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=1.00 E-value=1 Score=297.48 Aligned_cols=305 Identities=19% Similarity=0.269 Sum_probs=235.8
Q ss_pred CCCCCHHHHHHHHHHHHCC--CCCEEEEEECCCCCHHHHHHHHHHHHHCCC-CCCC-CEEEEEEECCCCCHHHHHHH---
Q ss_conf 0013427899999999615--994099999489870999999998300259-9999-56999994876596899999---
Q 002538 156 AIVKGLESTLEDVWRCLVE--ESAGIIGLYGMGGVGKTTLLTRINNKFLES-PSDF-DCVIWVVVSKDLQIEKNQEI--- 228 (911)
Q Consensus 156 ~~~~gr~~~~~~i~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~~f-~~~~wv~~s~~~~~~~~~~~--- 228 (911)
..++||+.+++.+.++|.. ++.++|+|+||||+||||||.+++++. .+ ...| +.++|++++.. +...+...
T Consensus 124 ~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~-~~~~~~f~~~v~wv~~~~~-~~~~~~~~l~~ 201 (591)
T 1z6t_A 124 VVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDH-SLLEGCFPGGVHWVSVGKQ-DKSGLLMKLQN 201 (591)
T ss_dssp SSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCH-HHHHHHCTTCEEEEEEESC-CHHHHHHHHHH
T ss_pred CEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHCH-HHHHHHCCCCEEEEECCCC-CHHHHHHHHHH
T ss_conf 714052999999999986036888469997699898899999998355-6888528996599977877-66889999999
Q ss_pred HHHHCCCCC--CCCCCCCHHHHHHHHHHHHHC--CEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHC
Q ss_conf 998809999--766778999999999999611--5089998453122331212677899999998299998184555302
Q 002538 229 IGKKIGLFD--DSWKNKNLDERALEIFKILRE--KKFVLLLDDIWERVNLNKVGVPLPSPQSTTASKVVFTTRFINVCGS 304 (911)
Q Consensus 229 i~~~l~~~~--~~~~~~~~~~~~~~l~~~l~~--k~~LlVlDdv~~~~~~~~l~~~l~~~~~~~gs~IiiTtR~~~v~~~ 304 (911)
+...++... ......+.+.....+...+.+ +++||||||+|+...+..+ ..+++||+|||+..++..
T Consensus 202 l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l---------~~~~~ilvTsR~~~~~~~ 272 (591)
T 1z6t_A 202 LCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF---------DSQCQILLTTRDKSVTDS 272 (591)
T ss_dssp HHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT---------CSSCEEEEEESCGGGGTT
T ss_pred HHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHH---------CCCCEEEEECCCCHHHHH
T ss_conf 99985035565567998899999999999706799869998589987999876---------379869998988177773
Q ss_pred CCCCCEEEC---CCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 587532870---58998999999999827843379954799999999990996058999986621699978999999999
Q 002538 305 MEAHRNFKV---ECLTEKHAWELFQMKVGEETLKSHPHVFELAQVVAKECGGLPLALITIGRAMAYKKTREEWKYAIEVL 381 (911)
Q Consensus 305 ~~~~~~~~l---~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~~~~~~w~~~~~~l 381 (911)
+. ...+++ ++|+.+++++||...++... ....+.+.+|+++|+|+||||..+|+.++.. ...|..++..+
T Consensus 273 ~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~~----~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~--~~~w~~~l~~l 345 (591)
T 1z6t_A 273 VM-GPKYVVPVESSLGKEKGLEILSLFVNMKK----ADLPEQAHSIIKECKGSPLVVSLIGALLRDF--PNRWEYYLKQL 345 (591)
T ss_dssp CC-SCEEEEECCSSCCHHHHHHHHHHHHTSCG----GGSCTHHHHHHHHHTTCHHHHHHHHHHHHHS--TTCHHHHHHHH
T ss_pred CC-CCCEEEECCCCCCHHHHHHHHHHHHCCCC----CCCCHHHHHHHHHHCCCCHHHHHHHHHHHCC--CHHHHHHHHHH
T ss_conf 48-98268615889998999999998718983----1045999999999589837999999998448--43599999999
Q ss_pred HHCCCCC-----CCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHH
Q ss_conf 7032123-----79711010010003478980245679977504888754576889999894597567751110122768
Q 002538 382 RRSTFEL-----AGLEKEVYPLLKFSYDCLPNDIIRSCFLYCCLYPEDWNTFKRNLIDCWIGEGFLEENDRFGAHNQGYY 456 (911)
Q Consensus 382 ~~~~~~~-----~~~~~~i~~~l~~sy~~L~~~~~k~c~l~~~~fp~~~~i~~~~li~~w~aeg~i~~~~~~~~~~~~~~ 456 (911)
....... ......+..++..||+.|++ +.|.||+++|+||+++.++...+...|.++ .+.+..
T Consensus 346 ~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~-~~~~~l~~la~f~~~~~i~~~~l~~l~~~~-----------~~~~~~ 413 (591)
T 1z6t_A 346 QNKQFKRIRKSSSYDYEALDEAMSISVEMLRE-DIKDYYTDLSILQKDVKVPTKVLCILWDME-----------TEEVED 413 (591)
T ss_dssp HSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCT-TTHHHHHHGGGCCTTCCEEHHHHHHHHTCC-----------HHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCH-HHHHHHHHCCCCCCCCCCCHHHHHHHHCCC-----------HHHHHH
T ss_conf 88689876511465437899999999986899-999999974556799850899999996658-----------899999
Q ss_pred HHHHHHHHHCCCCCC---CCCEEHHHHHHHHHHHHHH
Q ss_conf 999999830210027---9906356999999999997
Q 002538 457 IVGTLVHACLLEEVE---DDKVKMHDVIRDMALWIAS 490 (911)
Q Consensus 457 ~~~~L~~~~ll~~~~---~~~~~mHdlv~~~~~~i~~ 490 (911)
++++|+++||++... ...|+||+++|++++....
T Consensus 414 ~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~~ 450 (591)
T 1z6t_A 414 ILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKNC 450 (591)
T ss_dssp HHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHHTG
T ss_pred HHHHHHHCCCEEEECCCCCCEEEECHHHHHHHHHHHH
T ss_conf 9999985958688548985679976899999986535
No 5
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=1.00 E-value=1 Score=208.63 Aligned_cols=332 Identities=11% Similarity=0.128 Sum_probs=222.6
Q ss_pred CCCCCCCCCCCEEEEEECCCCCC------------------CCC-CC--CCCCCCEEECCCCCCCCCCHHHHCCCCCCCE
Q ss_conf 48998786660599902287544------------------888-78--8997548980367665457256505987849
Q 002538 509 VAPGVEGWEKVKRLLLMKNHIKH------------------LPD-IP--TCPHLLTLFLSHNQLRWISEDFFQFMPSLKV 567 (911)
Q Consensus 509 ~~~~~~~~~~lr~L~l~~~~~~~------------------l~~-~~--~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~ 567 (911)
.|+.+..+++++.|++.+|.+.. +|. +. .+++|++|++++|.+....+..+..+++|++
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~ 519 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS 519 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred HHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCE
T ss_conf 11887569998789796886788746532233222222445874440255999778987189887527387737999899
Q ss_pred EECCCCC-CCC--CCCCCCCCC-------CCCEEECCCCCCCCCCH--HHHCCCCCCEEECCCCCCCCCCCHHHHCCCCC
Q ss_conf 9924888-754--581112767-------77798446987677634--44126767598647875534438244306955
Q 002538 568 LNLSFTK-RHK--FPSGISKLA-------SLQLIDLSYTSIRGLPE--ELKALINLKCLNLDQTKFLVTIPRHLISSFSM 635 (911)
Q Consensus 568 L~L~~~~-~~~--lp~~i~~l~-------~L~~L~L~~~~i~~lp~--~~~~l~~L~~L~l~~~~~l~~ip~~~i~~l~~ 635 (911)
|++++|. +.. +|..++.+. +|++|++++|.+..+|. .+.++++|+.|++++|.. ..+| . ++.+++
T Consensus 520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l-~~lp-~-~~~L~~ 596 (876)
T 4ecn_A 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKV-RHLE-A-FGTNVK 596 (876)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCC-CBCC-C-CCTTSE
T ss_pred EECCCCCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCHHHHHCCCCCCEEECCCCCC-CCCH-H-HCCCCC
T ss_conf 989689876566461778752330155688319982289477618723551589889898979982-5621-2-247985
Q ss_pred CCEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCC-CCEEEEEECCCHHHHHHHHC--------------------
Q ss_conf 758885488997533567894223576443253108889-74899996570225764301--------------------
Q 002538 636 LHVLRMFGSGSSVFHEASGDSILFDGGELLADELLGLKY-LEVLDITLRSRHALQSVLSS-------------------- 694 (911)
Q Consensus 636 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~-L~~L~l~~~~~~~~~~~~~~-------------------- 694 (911)
|+.|++.+|.+. ..+..+..+++ |+.|+++.+....++.....
T Consensus 597 L~~L~Ls~N~l~----------------~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~i 660 (876)
T 4ecn_A 597 LTDLKLDYNQIE----------------EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEG 660 (876)
T ss_dssp ESEEECCSSCCS----------------CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTS
T ss_pred CEEEECCCCCCC----------------CCHHHHHHCCCCCCEEECCCCCCCCCCHHHHCCCCCCCCEEECCCCCCCCCC
T ss_conf 007987187125----------------0358775251149899984997874764452255677788977088478864
Q ss_pred ------CC--CCCCCEEEEEEECCCCCCEEECCCCCCCCCCEEEECCCCCCCEEEECCCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf ------66--5576427996002699930004413423465575334666432675046764355666457866779870
Q 002538 695 ------HK--LRSCTQAIFLQCFKDSKSIYAAALADLKHLKKLCISQCEELEELKIDCTGEVKRMCQPYIFRSLNKVQIY 766 (911)
Q Consensus 695 ------~~--~~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~ 766 (911)
.. ....++.|.++++... .++...+..+++|+.|++++| .+..++....... .+....+++|+.|+|+
T Consensus 661 p~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~~~~--~~~l~nl~~L~~L~Ls 736 (876)
T 4ecn_A 661 RNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNN-LMTSIPENSLKPK--DGNYKNTYLLTTIDLR 736 (876)
T ss_dssp SSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSC-CCSCCCTTSSSCT--TSCCTTGGGCCEEECC
T ss_pred CCCHHHHCCCCCCCCCEEECCCCCCC-CCCHHHHCCCCCCCEEECCCC-CCCCCCHHHHCCC--CCCCCCCCCCCEEECC
T ss_conf 32000000135797688983199688-659788713898899989899-6885496784555--3343214871589888
Q ss_pred CCCCCCCCCC-CC--CCCCCCEEEEECCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCEECCCCC------CCCCCCCCCC
Q ss_conf 4998888821-12--5899666968336553100136764023310378885444451003533------2233224786
Q 002538 767 SCPVLKDLTF-LV--FAPNLKSIDVRSCSVMKEIVSAGKSADIAEMMGNMSPFAKLQNLQLVRL------QNLKSIYWKL 837 (911)
Q Consensus 767 ~c~~l~~l~~-l~--~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~------~~L~~i~~~~ 837 (911)
+| .+..+|. +. .+++|+.|++++|. ++.++. .+..+++|+.|.++++ .-...++...
T Consensus 737 ~N-~L~~lp~~l~~~~l~~L~~L~Ls~N~-L~~lp~------------~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l 802 (876)
T 4ecn_A 737 FN-KLTSLSDDFRATTLPYLSNMDVSYNC-FSSFPT------------QPLNSSQLKAFGIRHQRDAEGNRILRQWPTGI 802 (876)
T ss_dssp SS-CCCCCCGGGSTTTCTTCCEEECCSSC-CSSCCC------------GGGGCTTCCEEECCCCBCTTCCBCCCCCCTTG
T ss_pred CC-CCCCCHHHHHHCCCCCCCEEEECCCC-CCCCCH------------HHHCCCCCCEEECCCCCCCCCCCCCCCCHHHH
T ss_conf 99-78665277624427986989908997-876105------------66159998899887997766563244486888
Q ss_pred CCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCC
Q ss_conf 46886446710455346688899988888633997010112235
Q 002538 838 VPFPHLKEIIVHQCNWLKKLPLDSNSAKEHKIVIHGEECWWNKL 881 (911)
Q Consensus 838 ~~~p~L~~L~i~~C~~L~~lp~~~~~~~~~l~~~~~~~~~~~~l 881 (911)
..+++|+.|.+++| ++..+|.... +.|..++...+-+..+
T Consensus 803 ~~L~~L~~L~Ls~N-~L~~Ip~~l~---~~L~~LdLs~N~l~~i 842 (876)
T 4ecn_A 803 TTCPSLIQLQIGSN-DIRKVDEKLT---PQLYILDIADNPNISI 842 (876)
T ss_dssp GGCSSCCEEECCSS-CCCBCCSCCC---SSSCEEECCSCTTCEE
T ss_pred HCCCCCCEEECCCC-CCCCCCHHHC---CCCCEEECCCCCCCCC
T ss_conf 36998788988799-7874087662---8778899979988811
No 6
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=1.00 E-value=1 Score=205.77 Aligned_cols=347 Identities=12% Similarity=0.097 Sum_probs=179.0
Q ss_pred CCCCCCCCEEEEEECCCCCC------------------CCC-CC--CCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEEC
Q ss_conf 98786660599902287544------------------888-78--8997548980367665457256505987849992
Q 002538 512 GVEGWEKVKRLLLMKNHIKH------------------LPD-IP--TCPHLLTLFLSHNQLRWISEDFFQFMPSLKVLNL 570 (911)
Q Consensus 512 ~~~~~~~lr~L~l~~~~~~~------------------l~~-~~--~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L 570 (911)
.+..+++++.|++.+|.+.. +|. +. .+++|++|++++|.+....+..+..+++|++|++
T Consensus 201 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 280 (636)
T 4eco_A 201 AVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINV 280 (636)
T ss_dssp GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEEC
T ss_pred HHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCHHCCCCCHHHHHCCCCCCCEEEECCCCCCCCCHHHHHCCCCCCEEEC
T ss_conf 77256478789886882366423221222221001024863220044687888980488577628388834999788978
Q ss_pred CCCC-CCC--CCCCCCCC------CCCCEEECCCCCCCCCCH--HHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCCEE
Q ss_conf 4888-754--58111276------777798446987677634--441267675986478755344382443069557588
Q 002538 571 SFTK-RHK--FPSGISKL------ASLQLIDLSYTSIRGLPE--ELKALINLKCLNLDQTKFLVTIPRHLISSFSMLHVL 639 (911)
Q Consensus 571 ~~~~-~~~--lp~~i~~l------~~L~~L~L~~~~i~~lp~--~~~~l~~L~~L~l~~~~~l~~ip~~~i~~l~~L~~L 639 (911)
++|. +.. +|..++.+ ++|++|++++|.+..+|. .++.+++|+.|++++|...+.+| . ++.+++|+.|
T Consensus 281 s~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~-~~~l~~L~~L 358 (636)
T 4eco_A 281 ACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-A-FGSEIKLASL 358 (636)
T ss_dssp TTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-C-CEEEEEESEE
T ss_pred CCCCCCCCCCCHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCHH-H-HCCCCCCCEE
T ss_conf 4798876653357887543046578888898979937766765554257888989690880705166-6-4788988989
Q ss_pred EECCCCCCCCCC--------CCCCCCCCCCCCCCHHHHCCC--CCCCEEEEEECCCHHHH-HHHH----CCCCCCCCEEE
Q ss_conf 854889975335--------678942235764432531088--89748999965702257-6430----16655764279
Q 002538 640 RMFGSGSSVFHE--------ASGDSILFDGGELLADELLGL--KYLEVLDITLRSRHALQ-SVLS----SHKLRSCTQAI 704 (911)
Q Consensus 640 ~l~~~~~~~~~~--------~~~~~~~~~~~~~~~~~l~~L--~~L~~L~l~~~~~~~~~-~~~~----~~~~~~~l~~L 704 (911)
++.+|.....+. +.......+.-...+..+..+ ++|+.|+++.+...... .... .......++.|
T Consensus 359 ~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L 438 (636)
T 4eco_A 359 NLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSI 438 (636)
T ss_dssp ECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEE
T ss_pred ECCCCCCCCCCHHHHHHCCCCCEEECCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCCCCCCCCEE
T ss_conf 89899403033756510236868985298275446655333457668897748857886524420022011258988889
Q ss_pred EEEECCCCCCEEECCCCCCCCCCEEEECCCCCCCEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCC-CC--CCC
Q ss_conf 960026999300044134234655753346664326750467643556664578667798704998888821-12--589
Q 002538 705 FLQCFKDSKSIYAAALADLKHLKKLCISQCEELEELKIDCTGEVKRMCQPYIFRSLNKVQIYSCPVLKDLTF-LV--FAP 781 (911)
Q Consensus 705 ~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~~-l~--~l~ 781 (911)
.++++... .++...+..+++|+.|++++|. +..++....... .+....+++|+.|++++|. +..+|. +. .++
T Consensus 439 ~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~~--~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~~~l~ 513 (636)
T 4eco_A 439 NLSNNQIS-KFPKELFSTGSPLSSINLMGNM-LTEIPKNSLKDE--NENFKNTYLLTSIDLRFNK-LTKLSDDFRATTLP 513 (636)
T ss_dssp ECCSSCCC-SCCTHHHHTTCCCSEEECCSSC-CSBCCSSSSEET--TEECTTGGGCCEEECCSSC-CCBCCGGGSTTTCT
T ss_pred ECCCCCCC-CCCHHHHCCCCCCCEEECCCCC-CCCCCHHHHCCC--CCCCCCCCCCCEEECCCCC-CCCCCHHHHHCCCC
T ss_conf 77279668-6787887158988989897997-887397884044--0012214773389896993-88168545344588
Q ss_pred CCCEEEEECCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCEECCCC------CCCCCCCCCCCCCCCCCCEEECCCCCCCC
Q ss_conf 966696833655310013676402331037888544445100353------32233224786468864467104553466
Q 002538 782 NLKSIDVRSCSVMKEIVSAGKSADIAEMMGNMSPFAKLQNLQLVR------LQNLKSIYWKLVPFPHLKEIIVHQCNWLK 855 (911)
Q Consensus 782 ~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~------~~~L~~i~~~~~~~p~L~~L~i~~C~~L~ 855 (911)
+|+.|++++|. ++.++. .+..+++|+.|.+++ +.-...++.....+++|+.|.+++| +++
T Consensus 514 ~L~~L~Ls~N~-l~~ip~------------~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N-~l~ 579 (636)
T 4eco_A 514 YLVGIDLSYNS-FSKFPT------------QPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSN-DIR 579 (636)
T ss_dssp TCCEEECCSSC-CSSCCC------------GGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSS-CCC
T ss_pred CCCEEECCCCC-CCCCCH------------HHHCCCCCCEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEECCCC-CCC
T ss_conf 76989898998-877682------------3530888787889888665667312127377856998788989899-477
Q ss_pred CCCCCCCCCCCCCEEEEECCCCCCCCC
Q ss_conf 888999888886339970101122351
Q 002538 856 KLPLDSNSAKEHKIVIHGEECWWNKLQ 882 (911)
Q Consensus 856 ~lp~~~~~~~~~l~~~~~~~~~~~~l~ 882 (911)
.+|.... +.+..++...+-+.++.
T Consensus 580 ~ip~~~~---~~L~~L~Ls~N~l~~~~ 603 (636)
T 4eco_A 580 KVNEKIT---PNISVLDIKDNPNISID 603 (636)
T ss_dssp BCCSCCC---TTCCEEECCSCTTCEEE
T ss_pred CCCHHHH---CCCCEEECCCCCCCCCC
T ss_conf 0597683---86789987699876336
No 7
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=204.23 Aligned_cols=93 Identities=14% Similarity=0.034 Sum_probs=54.1
Q ss_pred CCCCCCEEEEECCCCCCCCC-CCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCEECCCCCCCCCCCC
Q ss_conf 57866779870499888882-11258996669683365531001367640233103788854444510035332233224
Q 002538 756 IFRSLNKVQIYSCPVLKDLT-FLVFAPNLKSIDVRSCSVMKEIVSAGKSADIAEMMGNMSPFAKLQNLQLVRLQNLKSIY 834 (911)
Q Consensus 756 ~~~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~i~ 834 (911)
.+++|+.|++++|.....+| .++.+++|+.|+++++.....+|. .++.+++|+.|+++++.--..+|
T Consensus 630 ~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~------------~l~~L~~L~~LdLs~N~l~g~ip 697 (768)
T 3rgz_A 630 NNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPD------------EVGDLRGLNILDLSSNKLDGRIP 697 (768)
T ss_dssp SSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCG------------GGGGCTTCCEEECCSSCCEECCC
T ss_pred CCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCH------------HHHCCCCCCEEECCCCCCCCCCC
T ss_conf 335665797858801555877884141578784868803887896------------78477789989897880238688
Q ss_pred CCCCCCCCCCEEECCCCCCCCCCCCC
Q ss_conf 78646886446710455346688899
Q 002538 835 WKLVPFPHLKEIIVHQCNWLKKLPLD 860 (911)
Q Consensus 835 ~~~~~~p~L~~L~i~~C~~L~~lp~~ 860 (911)
.....+++|+.|++++|+--..+|.+
T Consensus 698 ~~l~~l~~L~~L~ls~N~l~g~iP~~ 723 (768)
T 3rgz_A 698 QAMSALTMLTEIDLSNNNLSGPIPEM 723 (768)
T ss_dssp GGGGGCCCCSEEECCSSEEEEECCSS
T ss_pred HHHHCCCCCCEEECCCCCCCCCCCCC
T ss_conf 67757887897879688155608996
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=1.00 E-value=1 Score=199.23 Aligned_cols=129 Identities=23% Similarity=0.207 Sum_probs=59.0
Q ss_pred CCCEEEEEECCCCCCCCC--CCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCC-CCCCCCCCCCCEEEC
Q ss_conf 660599902287544888--78899754898036766545725650598784999248887545-811127677779844
Q 002538 517 EKVKRLLLMKNHIKHLPD--IPTCPHLLTLFLSHNQLRWISEDFFQFMPSLKVLNLSFTKRHKF-PSGISKLASLQLIDL 593 (911)
Q Consensus 517 ~~lr~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~l-p~~i~~l~~L~~L~L 593 (911)
++++.|++++|.+..++. +..+++|++|++++|.+..+++..|.++++|++|++++|.+..+ |..++.+++|++|++
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 111 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA 111 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred CCCCEEECCCCCCCEECHHHCCCCCCCCEEECCCCCCCCCCHHHHHCHHHCCEEECCCCCCCCCCHHHCCCCCCCCEEEC
T ss_conf 87678878889757737545557766748868877366439777306010688678798563048522078653788870
Q ss_pred CCCCCCCCC-HHHHCCCCCCEEECCCCCCCC-CCCHHHHCCCCCCCEEEECCCCC
Q ss_conf 698767763-444126767598647875534-43824430695575888548899
Q 002538 594 SYTSIRGLP-EELKALINLKCLNLDQTKFLV-TIPRHLISSFSMLHVLRMFGSGS 646 (911)
Q Consensus 594 ~~~~i~~lp-~~~~~l~~L~~L~l~~~~~l~-~ip~~~i~~l~~L~~L~l~~~~~ 646 (911)
++|.+..+| ..++++++|++|++++|.... .+|.. ++++++|++|++.+|..
T Consensus 112 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~-~~~l~~L~~L~Ls~n~l 165 (606)
T 3vq2_A 112 VETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAY-FSNLTNLVHVDLSYNYI 165 (606)
T ss_dssp TTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGG-GGTCTTCCEEECCSSCC
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCCCEECHHH-HHHCCCCCEEECCCCCC
T ss_conf 3775554451134898877989687885232530686-73267777887668853
No 9
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=1.00 E-value=1 Score=199.14 Aligned_cols=154 Identities=27% Similarity=0.320 Sum_probs=91.7
Q ss_pred CCCEEEEEECCCCCCCC--CCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCC-CCCCCCCCEEEC
Q ss_conf 66059990228754488--878899754898036766545725650598784999248887545811-127677779844
Q 002538 517 EKVKRLLLMKNHIKHLP--DIPTCPHLLTLFLSHNQLRWISEDFFQFMPSLKVLNLSFTKRHKFPSG-ISKLASLQLIDL 593 (911)
Q Consensus 517 ~~lr~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~-i~~l~~L~~L~L 593 (911)
.+++.|++.+|.+..++ .+..+++|++|++++|.+..+.+..|.++++|++|++++|.+..+|.. +..+++|++|++
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 111 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI 111 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEEC
T ss_pred CCCCEEECCCCCCCEECHHHCCCCCCCCEEECCCCCCCEECHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEC
T ss_conf 99838978799364579767158987899889999437708503208736899889999687438320258777797889
Q ss_pred CCCCCCC-CCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHCCC
Q ss_conf 6987677-634441267675986478755344382443069557588854889975335678942235764432531088
Q 002538 594 SYTSIRG-LPEELKALINLKCLNLDQTKFLVTIPRHLISSFSMLHVLRMFGSGSSVFHEASGDSILFDGGELLADELLGL 672 (911)
Q Consensus 594 ~~~~i~~-lp~~~~~l~~L~~L~l~~~~~l~~ip~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L 672 (911)
++|.+.. .|..+..+++|+.|++++|. +..++...+..+++|+.|++.+|... ......+..+
T Consensus 112 s~n~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~---------------~~~~~~l~~l 175 (477)
T 2id5_A 112 SENKIVILLDYMFQDLYNLKSLEVGDND-LVYISHRAFSGLNSLEQLTLEKCNLT---------------SIPTEALSHL 175 (477)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEEECCTT-CCEECTTSSTTCTTCCEEEEESCCCS---------------SCCHHHHTTC
T ss_pred CCCCCCCCCHHHCCCCCCCCEEECCCCC-CCEECHHHCCCCCCCCEEECCCCCCC---------------CCCHHHHCCC
T ss_conf 9995663796571664359989899995-55108400358899998979899586---------------1474572226
Q ss_pred CCCCEEEEEECCCH
Q ss_conf 89748999965702
Q 002538 673 KYLEVLDITLRSRH 686 (911)
Q Consensus 673 ~~L~~L~l~~~~~~ 686 (911)
++|+.|++..+...
T Consensus 176 ~~L~~L~l~~n~i~ 189 (477)
T 2id5_A 176 HGLIVLRLRHLNIN 189 (477)
T ss_dssp TTCCEEEEESCCCC
T ss_pred CCCCEEECCCCCCC
T ss_conf 77768869999575
No 10
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=1.00 E-value=1 Score=197.98 Aligned_cols=301 Identities=17% Similarity=0.165 Sum_probs=206.2
Q ss_pred CCCCCCCEEEEEECCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 87866605999022875448887889975489803676654572565059878499924888754581112767777984
Q 002538 513 VEGWEKVKRLLLMKNHIKHLPDIPTCPHLLTLFLSHNQLRWISEDFFQFMPSLKVLNLSFTKRHKFPSGISKLASLQLID 592 (911)
Q Consensus 513 ~~~~~~lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~ 592 (911)
...+++++.+.+.++.+..++.+..+++|++|++++|.+..+++ +..+++|++|++++|.+..++ .+..+++|++|+
T Consensus 40 ~~~l~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~ 116 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELY 116 (347)
T ss_dssp HHHHTTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEE
T ss_pred CHHCCCCCEEEEECCCCCCCHHHHHCCCCCEEECCCCCCCCCHH--HHCCCCCCEEECCCCCCCCCH-HHCCCCCCCEEE
T ss_conf 00103446899858864463555304886589765984456444--406886888984388656706-770788578888
Q ss_pred CCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHCCC
Q ss_conf 46987677634441267675986478755344382443069557588854889975335678942235764432531088
Q 002538 593 LSYTSIRGLPEELKALINLKCLNLDQTKFLVTIPRHLISSFSMLHVLRMFGSGSSVFHEASGDSILFDGGELLADELLGL 672 (911)
Q Consensus 593 L~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~ip~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L 672 (911)
+++|.+..+|. +..+++|+.|++++|.....++. +..+++|+.|++.+|... ....+..+
T Consensus 117 l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~--~~~l~~L~~L~l~~~~~~-----------------~~~~~~~l 176 (347)
T 4fmz_A 117 LNEDNISDISP-LANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKVK-----------------DVTPIANL 176 (347)
T ss_dssp CTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGG--GTTCTTCCEEECCSSCCC-----------------CCGGGGGC
T ss_pred CCCCCCCCCHH-HCCCCCEEEEECCCCCCCCCCCC--HHHCCCCCEEEECCCCCC-----------------CCHHHCCC
T ss_conf 86885667630-24687601897779987443601--231787747881688867-----------------76100247
Q ss_pred CCCCEEEEEECCCHHHHHHHHCCCCCCCCEEEEEEECCCCCCEEECCCCCCCCCCEEEECCCCCCCEEEECCCCCCCCCC
Q ss_conf 89748999965702257643016655764279960026999300044134234655753346664326750467643556
Q 002538 673 KYLEVLDITLRSRHALQSVLSSHKLRSCTQAIFLQCFKDSKSIYAAALADLKHLKKLCISQCEELEELKIDCTGEVKRMC 752 (911)
Q Consensus 673 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~ 752 (911)
++|+.|+++.+....+.. ......++.+.+.++...... .+..+++|++|++++|. +..+.. .
T Consensus 177 ~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~~n~l~~~~---~~~~~~~L~~L~l~~n~-l~~~~~--~------- 239 (347)
T 4fmz_A 177 TDLYSLSLNYNQIEDISP----LASLTSLHYFTAYVNQITDIT---PVANMTRLNSLKIGNNK-ITDLSP--L------- 239 (347)
T ss_dssp TTCSEEECTTSCCCCCGG----GGGCTTCCEEECCSSCCCCCG---GGGGCTTCCEEECCSSC-CCCCGG--G-------
T ss_pred CCCCEEECCCCCCCCCCC----CCCCCCCCEEECCCCCCCCCC---HHHCCCCCCEEECCCCC-CCCCCC--H-------
T ss_conf 878889814985665403----167775206612247777885---34447868979855985-678722--2-------
Q ss_pred CCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCEECCCCCCCCCC
Q ss_conf 66457866779870499888882112589966696833655310013676402331037888544445100353322332
Q 002538 753 QPYIFRSLNKVQIYSCPVLKDLTFLVFAPNLKSIDVRSCSVMKEIVSAGKSADIAEMMGNMSPFAKLQNLQLVRLQNLKS 832 (911)
Q Consensus 753 ~~~~~~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~ 832 (911)
..+++|+.|++++| .+..++.+..+++|+.|++++|. ++.++ .+..+++|+.|.+.+|.--..
T Consensus 240 --~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~l~~n~-l~~~~-------------~~~~l~~L~~L~L~~n~l~~~ 302 (347)
T 4fmz_A 240 --ANLSQLTWLEIGTN-QISDINAVKDLTKLKMLNVGSNQ-ISDIS-------------VLNNLSQLNSLFLNNNQLGNE 302 (347)
T ss_dssp --TTCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSC-CCCCG-------------GGGGCTTCSEEECCSSCCCGG
T ss_pred --HCCCCCCEEECCCC-CCCCCHHHHCCCCCCEEECCCCC-CCCCH-------------HHCCCCCCCEEECCCCCCCCC
T ss_conf --01888898979887-55878567168976789802985-68885-------------455899888897769968775
Q ss_pred CCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf 24786468864467104553466888999888886339970
Q 002538 833 IYWKLVPFPHLKEIIVHQCNWLKKLPLDSNSAKEHKIVIHG 873 (911)
Q Consensus 833 i~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~~~~~l~~~~~ 873 (911)
.+.....+++|+.|.+++|+ ++.++. . ..++.+..++.
T Consensus 303 ~~~~l~~l~~L~~L~L~~n~-l~~~~~-~-~~l~~L~~L~l 340 (347)
T 4fmz_A 303 DMEVIGGLTNLTTLFLSQNH-ITDIRP-L-ASLSKMDSADF 340 (347)
T ss_dssp GHHHHHTCTTCSEEECCSSS-CCCCGG-G-GGCTTCSEESS
T ss_pred CHHHHHCCCCCCEEECCCCC-CCCCCC-H-HHHHCCCEEEH
T ss_conf 96676266668789754974-456607-3-35220451101
Done!