Query 002539
Match_columns 911
No_of_seqs 440 out of 3164
Neff 6.2
Searched_HMMs 29240
Date Tue Mar 26 16:49:04 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002539.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1257-1261//hhsearch_pdb/002539hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1n11_A Ankyrin; clathrin, BAND 1.0 1 1 280.6 29.8 271 539-849 81-375 (437)
2 1n11_A Ankyrin; clathrin, BAND 1.0 1 1 275.5 28.6 265 539-841 114-400 (437)
3 4g8k_A 2-5A-dependent ribonucl 1.0 1 1 273.0 26.0 272 537-846 24-329 (337)
4 3ljn_A Hypothetical protein; a 1.0 1 1 269.0 16.6 271 534-843 16-314 (364)
5 1oy3_D Transcription factor in 1.0 1 1 263.3 20.7 252 534-828 5-263 (282)
6 1wdy_A 2-5A-dependent ribonucl 1.0 1 1 262.7 28.8 254 537-848 4-283 (285)
7 2fo1_E LIN-12 protein; beta-ba 1.0 1 1 262.6 17.2 223 536-809 123-370 (373)
8 2fo1_E LIN-12 protein; beta-ba 1.0 1 1 262.5 18.3 249 535-843 91-371 (373)
9 3utm_A Tankyrase-1; tankyrase, 1.0 1 1 262.4 26.4 271 535-845 55-336 (351)
10 4b93_B Ankyrin repeat domain-c 1.0 1 1 262.4 14.0 213 534-797 7-230 (269)
No 1
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=1.00 E-value=1 Score=280.61 Aligned_cols=271 Identities=14% Similarity=0.104 Sum_probs=173.7
Q ss_pred CHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHH--
Q ss_conf 449899997399189999998899988888988997388999971998612788998871999965457999907773--
Q 002539 539 AENCKWSCMFGEIEVPAEIVAGGVLRCHTSSQKVGRVPFYVTCSNRLSCSEVREFEYRASHIPDVDVADNCGDITSEN-- 616 (911)
Q Consensus 539 ~T~LHlAc~fG~~eVv~~LLe~Gadvn~~p~d~~G~TPLhiAa~ng~a~seVv~feyLl~~gadin~~D~~G~TaL~~-- 616 (911)
.||||+||..|+.+++++|++.|++++ ..+..|.||||+|+.+|+ .+++ ++|+..+++++..+..|.||++.
T Consensus 81 ~t~L~~A~~~g~~~~v~~Ll~~ga~~~--~~~~~g~t~L~~A~~~g~--~~~v--~~Ll~~~~~~~~~~~~g~t~L~~A~ 154 (437)
T 1n11_A 81 QTPLHCAARIGHTNMVKLLLENNANPN--LATTAGHTPLHIAAREGH--VETV--LALLEKEASQACMTKKGFTPLHVAA 154 (437)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHHTCCTT--CCCTTCCCHHHHHHHHTC--HHHH--HHHHHTTCCSCCCCTTSCCHHHHHH
T ss_pred CCHHHHHHHCCCHHHHHHHHHCCCCCC--CCCCCCCCHHHHHHHCCC--HHHH--HHHHHCCCCCCCCCCCCCCHHHHHH
T ss_conf 989999998798999999996799988--779999859999998599--9999--9999679987677999987999999
Q ss_pred --HHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHH--------------HH
Q ss_conf --3799999981-289999998999922456788987742105895025999988623989378--------------99
Q 002539 617 --LRMQFGKLLC-LTSVSTPNYDPSNLSDISQLNSKISSLLKDENDDWDLMLKLTAEEKFSSEE--------------VK 679 (911)
Q Consensus 617 --~~~~ivkLLl-~ga~~~~~~~~~~~~e~~~l~~~i~sl~~~d~~~~t~Ll~a~~~~~~~~~~--------------~~ 679 (911)
++.+++++|+ .+++.+.. +..+.++|+.++..+...... ..
T Consensus 155 ~~g~~~~v~~Ll~~g~~~~~~----------------------~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g 212 (437)
T 1n11_A 155 KYGKVRVAELLLERDAHPNAA----------------------GKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNG 212 (437)
T ss_dssp HTTCHHHHHHHHHTTCCTTCC----------------------CSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTC
T ss_pred HCCCHHHHHHHHHCCCCCCCC----------------------CCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCC
T ss_conf 769899999999679998777----------------------8999888999998199999999984799988767789
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCH
Q ss_conf 99999999975699999999949999972369999389999991997688758764997432479997188999981999
Q 002539 680 EKLVQKLLKEKLQVWLVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRE 759 (911)
Q Consensus 680 ~~ll~~alk~~l~~~Lv~lLle~Gadin~~D~~G~TpLHlAA~~G~~~iVklLLe~GadIN~rD~~G~TPLH~AA~~G~~ 759 (911)
...++.++..+.. .+++.|++.|++++..+..|.||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.
T Consensus 213 ~t~L~~A~~~~~~-~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~ 291 (437)
T 1n11_A 213 YTPLHIAAKQNQV-EVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHV 291 (437)
T ss_dssp CCHHHHHHHTTCH-HHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCH
T ss_pred CCHHHHHHHCCCH-HHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCH
T ss_conf 9889999986989-999999976999888798999799999977889999999966999998799999799999984999
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCH-----HHHCHHHH
Q ss_conf 9999999839999998899999999999999999739499999999829978643575458889907-----63118999
Q 002539 760 RTVASLIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESDLSSALSAISLNKKDGDVA-----EVTGATAV 834 (911)
Q Consensus 760 eiVklLL~~GAdinavtDpt~~D~~G~TPLhlAa~~Gh~eIvk~LLE~gl~sh~adlnlkd~~G~ta-----~~~~~~vV 834 (911)
+++++|+++|++++. ++..|.||||+|+..|+.+++++|++.| ++++.++..|.+| ..+..++|
T Consensus 292 ~~~~~Ll~~g~~~~~------~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-----ad~n~~~~~g~t~L~~A~~~g~~~iv 360 (437)
T 1n11_A 292 PVADVLIKHGVMVDA------TTRMGYTPLHVASHYGNIKLVKFLLQHQ-----ADVNAKTKLGYSPLHQAAQQGHTDIV 360 (437)
T ss_dssp HHHHHHHHHTCCTTC------CCSSCCCHHHHHHHSSCSHHHHHHHHTT-----CCTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred HHHHHHHHCCCCCCC------CCCCCCCHHHHHHHCCCHHHHHHHHHCC-----CCCCCCCCCCCCHHHHHHHCCHHHHH
T ss_conf 999999848756788------7999988999999869499999999669-----99998899998899999987819999
Q ss_pred HHHHHCCCCCCCCCC
Q ss_conf 976625999999999
Q 002539 835 QTVPQRCPTPVSDGD 849 (911)
Q Consensus 835 ~~Lle~gA~~~~~~~ 849 (911)
+.|+++|++++..+.
T Consensus 361 ~~Ll~~ga~~~~~~~ 375 (437)
T 1n11_A 361 TLLLKNGASPNEVSS 375 (437)
T ss_dssp HHHHHTTCCSCCCCS
T ss_pred HHHHHCCCCCCCCCC
T ss_conf 999977689988789
No 2
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=1.00 E-value=1 Score=275.52 Aligned_cols=265 Identities=16% Similarity=0.116 Sum_probs=164.2
Q ss_pred CHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHH--
Q ss_conf 449899997399189999998899988888988997388999971998612788998871999965457999907773--
Q 002539 539 AENCKWSCMFGEIEVPAEIVAGGVLRCHTSSQKVGRVPFYVTCSNRLSCSEVREFEYRASHIPDVDVADNCGDITSEN-- 616 (911)
Q Consensus 539 ~T~LHlAc~fG~~eVv~~LLe~Gadvn~~p~d~~G~TPLhiAa~ng~a~seVv~feyLl~~gadin~~D~~G~TaL~~-- 616 (911)
.||||+||..|+.++++.|++.|++.+ ..+..|.||||+|+..|+ .+++ ++|+..+++++..+..|.||++.
T Consensus 114 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~--~~~~~g~t~L~~A~~~g~--~~~v--~~Ll~~g~~~~~~~~~g~t~L~~A~ 187 (437)
T 1n11_A 114 HTPLHIAAREGHVETVLALLEKEASQA--CMTKKGFTPLHVAAKYGK--VRVA--ELLLERDAHPNAAGKNGLTPLHVAV 187 (437)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHTTCCSC--CCCTTSCCHHHHHHHTTC--HHHH--HHHHHTTCCTTCCCSSCCCHHHHHH
T ss_pred CCHHHHHHHCCCHHHHHHHHHCCCCCC--CCCCCCCCHHHHHHHCCC--HHHH--HHHHHCCCCCCCCCCCCCCHHHHHH
T ss_conf 859999998599999999996799876--779999879999997698--9999--9999679998777899988899999
Q ss_pred --HHHHHHHHHH-CCCCCCCCCCCCCCHHHHH--------HHHHHH----HHHCCCCCCHHHHHHHHHHCCCCHHHHHHH
Q ss_conf --3799999981-2899999989999224567--------889877----421058950259999886239893789999
Q 002539 617 --LRMQFGKLLC-LTSVSTPNYDPSNLSDISQ--------LNSKIS----SLLKDENDDWDLMLKLTAEEKFSSEEVKEK 681 (911)
Q Consensus 617 --~~~~ivkLLl-~ga~~~~~~~~~~~~e~~~--------l~~~i~----sl~~~d~~~~t~Ll~a~~~~~~~~~~~~~~ 681 (911)
++..++++|+ .+++.+... ..+...... .+..+. .....+..+.++|+.++..+...
T Consensus 188 ~~~~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~------- 259 (437)
T 1n11_A 188 HHNNLDIVKLLLPRGGSPHSPA-WNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAE------- 259 (437)
T ss_dssp HTTCHHHHHHHGGGTCCSCCCC-TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHH-------
T ss_pred HCCCHHHHHHHHHCCCCCCCCC-CCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHH-------
T ss_conf 8199999999984799988767-78998899999869899999999769998887989997999999778899-------
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHH
Q ss_conf 99999997569999999994999997236999938999999199768875876499743247999718899998199999
Q 002539 682 LVQKLLKEKLQVWLVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERT 761 (911)
Q Consensus 682 ll~~alk~~l~~~Lv~lLle~Gadin~~D~~G~TpLHlAA~~G~~~iVklLLe~GadIN~rD~~G~TPLH~AA~~G~~ei 761 (911)
+++.|++.|++++..+..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+.+|+.++
T Consensus 260 -------------~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~ 326 (437)
T 1n11_A 260 -------------MVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKL 326 (437)
T ss_dssp -------------HHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHH
T ss_pred -------------HHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHH
T ss_conf -------------9999996699999879999979999998499999999984875678879999889999998694999
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCH-----HHHCHHHHHH
Q ss_conf 99999839999998899999999999999999739499999999829978643575458889907-----6311899997
Q 002539 762 VASLIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESDLSSALSAISLNKKDGDVA-----EVTGATAVQT 836 (911)
Q Consensus 762 VklLL~~GAdinavtDpt~~D~~G~TPLhlAa~~Gh~eIvk~LLE~gl~sh~adlnlkd~~G~ta-----~~~~~~vV~~ 836 (911)
|++|+++|++++. +|..|.||||+|+..|+.+++++|++.| ++++.++..|.+| ..+...+++.
T Consensus 327 v~~Ll~~gad~n~------~~~~g~t~L~~A~~~g~~~iv~~Ll~~g-----a~~~~~~~~g~t~l~~A~~~g~~~~~~~ 395 (437)
T 1n11_A 327 VKFLLQHQADVNA------KTKLGYSPLHQAAQQGHTDIVTLLLKNG-----ASPNEVSSDGTTPLAIAKRLGYISVTDV 395 (437)
T ss_dssp HHHHHHTTCCTTC------CCTTSCCHHHHHHHTTCHHHHHHHHHTT-----CCSCCCCSSSCCHHHHHHHTTCHHHHHH
T ss_pred HHHHHHCCCCCCC------CCCCCCCHHHHHHHCCHHHHHHHHHHCC-----CCCCCCCCCCCCHHHHHHHCCCHHHHHH
T ss_conf 9999966999998------8999988999999878199999999776-----8998878998989999988495899999
Q ss_pred HHHCC
Q ss_conf 66259
Q 002539 837 VPQRC 841 (911)
Q Consensus 837 Lle~g 841 (911)
|....
T Consensus 396 l~~~~ 400 (437)
T 1n11_A 396 LKVVT 400 (437)
T ss_dssp HHHHC
T ss_pred HHHCC
T ss_conf 98602
No 3
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=1.00 E-value=1 Score=273.03 Aligned_cols=272 Identities=13% Similarity=0.043 Sum_probs=191.8
Q ss_pred CCCHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCC-CCCCHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHH
Q ss_conf 6544989999739918999999889998888898-899738899997199861278899887199996545799990777
Q 002539 537 QEAENCKWSCMFGEIEVPAEIVAGGVLRCHTSSQ-KVGRVPFYVTCSNRLSCSEVREFEYRASHIPDVDVADNCGDITSE 615 (911)
Q Consensus 537 ~~~T~LHlAc~fG~~eVv~~LLe~Gadvn~~p~d-~~G~TPLhiAa~ng~a~seVv~feyLl~~gadin~~D~~G~TaL~ 615 (911)
++.|+||.||..|++++|++||+.|++++ ..+ ..|+||||+||.+|+ .+++ ++|+.+|++++..+..+.++++
T Consensus 24 ~~~t~L~~Av~~g~~~~V~~LL~~Gadvn--~~~~~~g~TpLh~A~~~g~--~~iv--~~Ll~~ga~~~~~~~~~~~~~~ 97 (337)
T 4g8k_A 24 EDNHLLIKAVQNEDVDLVQQLLEGGANVN--FQEEEGGWTPLHNAVQMSR--EDIV--ELLLRHGADPVLRKKNGATPFI 97 (337)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHTCCTT--CCCTTTCCCHHHHHHHTTC--HHHH--HHHHHTTCCTTCCCTTCCCHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHCCCCCC--CCCCCCCCCHHHHHHHCCC--HHHH--HHHHHCCCCHHHHCCCCCCHHH
T ss_conf 89849999998489999999998799978--3489899699999998498--9999--9998759953332157886467
Q ss_pred H----HHHHHHHHHH-CCCCCCCCCCCCCCHHHHHH--------HHHHHHH--------------HCCCCCCHHHHHHHH
Q ss_conf 3----3799999981-28999999899992245678--------8987742--------------105895025999988
Q 002539 616 N----LRMQFGKLLC-LTSVSTPNYDPSNLSDISQL--------NSKISSL--------------LKDENDDWDLMLKLT 668 (911)
Q Consensus 616 ~----~~~~ivkLLl-~ga~~~~~~~~~~~~e~~~l--------~~~i~sl--------------~~~d~~~~t~Ll~a~ 668 (911)
. ....+..++. .+.+++..+. .+.+..... +..+... ...+..++++|+.++
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~d~-~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~ 176 (337)
T 4g8k_A 98 LAAIAGSVKLLKLFLSKGADVNECDF-YGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAA 176 (337)
T ss_dssp HHHHHTCHHHHHHHHTTTCCTTCBCT-TCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHH
T ss_pred HHHHCCCCHHHHHHHHCCCHHHHHCC-CCCCHHHHHHHCCCHHHHHHHHHCCCCCCHHHCCCCCCCCCCCCCCCHHHHHH
T ss_conf 77750541356776310200555303-79987999987186999999997599834333013220003678976999999
Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCCCCCCCCCCCCHHHHHHHCCC----HHHHHHHHHCCCCCCCCC
Q ss_conf 62398937899999999999756999999999-4999997236999938999999199----768875876499743247
Q 002539 669 AEEKFSSEEVKEKLVQKLLKEKLQVWLVQKAA-EGGKGPCVLDHCGQGVLHFAAALGY----DWALEPTTVAGVNINFRD 743 (911)
Q Consensus 669 ~~~~~~~~~~~~~ll~~alk~~l~~~Lv~lLl-e~Gadin~~D~~G~TpLHlAA~~G~----~~iVklLLe~GadIN~rD 743 (911)
..++.. +++.|+ +.|++++.+|..|.|+||.++..+. ..++++|+++|+++|.+|
T Consensus 177 ~~g~~~--------------------~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d 236 (337)
T 4g8k_A 177 EKGHVE--------------------VLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRG 236 (337)
T ss_dssp HHTCHH--------------------HHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCC
T ss_pred HCCCHH--------------------HHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCC
T ss_conf 877899--------------------999998634989676578897278999997375668999999997799988768
Q ss_pred CCCCCHHHHHHHCCCHHHHHHHHHC-CCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 9997188999981999999999983-999999889999999999999999973949999999982997864357545888
Q 002539 744 VNGWTALHWAAYCGRERTVASLIAL-GAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESDLSSALSAISLNKKD 822 (911)
Q Consensus 744 ~~G~TPLH~AA~~G~~eiVklLL~~-GAdinavtDpt~~D~~G~TPLhlAa~~Gh~eIvk~LLE~gl~sh~adlnlkd~~ 822 (911)
..|+||||+||..|+.++|+.|+.. |++++. +|..|+||||+|+..|+.+++++|+++| ++++.++..
T Consensus 237 ~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~------~d~~G~TpL~~A~~~g~~~iv~~Ll~~G-----Ad~n~~~~L 305 (337)
T 4g8k_A 237 ERGKTPLILAVEKKHLGLVQRLLEQEHIEIND------TDSDGKTALLLAVELKLKKIAELLCKRG-----ASTDCGDLV 305 (337)
T ss_dssp GGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTC------BCTTSCBHHHHHHHTTCHHHHHHHHTTS-----CSSTTCCHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCC------CCCCCCCHHHHHHHCCCHHHHHHHHHCC-----CCCCCCCHH
T ss_conf 99998789999851258999998734875667------6899999999999868799999999878-----999987899
Q ss_pred CCCHHHHCHHHHHHHHHCCCCCCC
Q ss_conf 990763118999976625999999
Q 002539 823 GDVAEVTGATAVQTVPQRCPTPVS 846 (911)
Q Consensus 823 G~ta~~~~~~vV~~Lle~gA~~~~ 846 (911)
..++..+..++|+.|+++||+++.
T Consensus 306 ~~A~~~~~~~iv~~Ll~~GA~~d~ 329 (337)
T 4g8k_A 306 MTARRNYDHSLVKVLLSHGAKEDF 329 (337)
T ss_dssp HHHHHTTCHHHHHHHHHTTCCC--
T ss_pred HHHHHCCCHHHHHHHHHCCCCCCC
T ss_conf 999986999999999987699898
No 4
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=1.00 E-value=1 Score=269.02 Aligned_cols=271 Identities=11% Similarity=0.075 Sum_probs=206.7
Q ss_pred CCCCCCHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHH
Q ss_conf 68665449899997399189999998899988888988997388999971998612788998871999965457999907
Q 002539 534 MSQQEAENCKWSCMFGEIEVPAEIVAGGVLRCHTSSQKVGRVPFYVTCSNRLSCSEVREFEYRASHIPDVDVADNCGDIT 613 (911)
Q Consensus 534 ~~~~~~T~LHlAc~fG~~eVv~~LLe~Gadvn~~p~d~~G~TPLhiAa~ng~a~seVv~feyLl~~gadin~~D~~G~Ta 613 (911)
.+..+.|+||+||..|+.+++++||+.|++++ ..+..|.||||+||.+|+ .+++ ++|+..+++++. ..|.||
T Consensus 16 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~--~~d~~g~t~L~~A~~~g~--~~~v--~~Ll~~g~~~~~--~~g~t~ 87 (364)
T 3ljn_A 16 SDDENMEKIHVAARKGQTDEVRRLIETGVSPT--IQNRFGCTALHLACKFGC--VDTA--KYLASVGEVHSL--WHGQKP 87 (364)
T ss_dssp CCHHHHHHHHHHHHHTCHHHHHHHHHTTCCTT--CCCTTCCCHHHHHHHHCC--HHHH--HHHHHHCCCCCC--BTTBCH
T ss_pred CCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCC--CCCCCCCCHHHHHHHCCC--HHHH--HHHHHCCCCCCC--CCCCCH
T ss_conf 48899979999998099999999998698942--248999969999998598--9999--999977997545--689988
Q ss_pred HHH----HHHHHHHHHHC-----CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHC--CCCHHHHHHHH
Q ss_conf 773----37999999812-----89999998999922456788987742105895025999988623--98937899999
Q 002539 614 SEN----LRMQFGKLLCL-----TSVSTPNYDPSNLSDISQLNSKISSLLKDENDDWDLMLKLTAEE--KFSSEEVKEKL 682 (911)
Q Consensus 614 L~~----~~~~ivkLLl~-----ga~~~~~~~~~~~~e~~~l~~~i~sl~~~d~~~~t~Ll~a~~~~--~~~~~~~~~~l 682 (911)
++. ++..++++|+. +.+.+............ .......+..++++|+.++..+ ...
T Consensus 88 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~g~t~L~~A~~~g~~~~~-------- 154 (364)
T 3ljn_A 88 IHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVN-----EIGSHVKHCKGQTALHWCVGLGPEYLE-------- 154 (364)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEE-----EETTEEEEESCCCHHHHHHHSCGGGHH--------
T ss_pred HHHHHHCCCHHHHHHHHHHCCCCCCCHHHHHHHCCHHHHH-----HHCCCCCCCCCCCHHHHHHHCCCCHHH--------
T ss_conf 9999886998899999971333587778898630267665-----403566798898789999974996699--------
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCC-----CCCCCCCCCCHHHHHHHCC
Q ss_conf 99999975699999999949999972369999389999991997688758764997-----4324799971889999819
Q 002539 683 VQKLLKEKLQVWLVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVN-----INFRDVNGWTALHWAAYCG 757 (911)
Q Consensus 683 l~~alk~~l~~~Lv~lLle~Gadin~~D~~G~TpLHlAA~~G~~~iVklLLe~Gad-----IN~rD~~G~TPLH~AA~~G 757 (911)
+++.|++.|++++.+|..|.||||+|+..|+.+++++|+++|++ +|.+|..|+||||+||..|
T Consensus 155 ------------~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g 222 (364)
T 3ljn_A 155 ------------MIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILIN 222 (364)
T ss_dssp ------------HHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTT
T ss_pred ------------HHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHCC
T ss_conf ------------99999976999736288999899999982989999999860554123555232889980999999759
Q ss_pred CHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCC-------CCCCCCCCCCCCCH----
Q ss_conf 9999999998399999988999999999999999997394999999998299786-------43575458889907----
Q 002539 758 RERTVASLIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESDLSSA-------LSAISLNKKDGDVA---- 826 (911)
Q Consensus 758 ~~eiVklLL~~GAdinavtDpt~~D~~G~TPLhlAa~~Gh~eIvk~LLE~gl~sh-------~adlnlkd~~G~ta---- 826 (911)
+.++|++||++||+++. +|..|.||||+|+..|+.+++++|++.+.... .......+..++++
T Consensus 223 ~~~~v~~Ll~~gad~~~------~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a 296 (364)
T 3ljn_A 223 WEDVAMRFVEMGIDVNM------EDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPA 296 (364)
T ss_dssp CHHHHHHHHTTTCCTTC------CCTTSCCHHHHHHHTCCHHHHHHHHHHSCHHHHHTCTTBSSSSBCGGGCCCCTTSCS
T ss_pred CHHHHHHHHHCCCCCCC------CCCCCCCHHHHHHHHCHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCCCHHH
T ss_conf 88999999986999888------799999889999983829999999974880554157566764235654320001243
Q ss_pred -HHHCHHHHHHHHHCCCC
Q ss_conf -63118999976625999
Q 002539 827 -EVTGATAVQTVPQRCPT 843 (911)
Q Consensus 827 -~~~~~~vV~~Lle~gA~ 843 (911)
..+..+.+..|+..+++
T Consensus 297 a~~~~~~~v~~ll~~~~~ 314 (364)
T 3ljn_A 297 AADPSKQEVLQLLQEKLD 314 (364)
T ss_dssp SCCHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHH
T ss_conf 221687899999998799
No 5
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=1.00 E-value=1 Score=263.34 Aligned_cols=252 Identities=13% Similarity=0.018 Sum_probs=196.5
Q ss_pred CCCCCCHHHHHHHHCCCCHHHHHHHHCCCCCC-CCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCH
Q ss_conf 68665449899997399189999998899988-88898899738899997199861278899887199996545799990
Q 002539 534 MSQQEAENCKWSCMFGEIEVPAEIVAGGVLRC-HTSSQKVGRVPFYVTCSNRLSCSEVREFEYRASHIPDVDVADNCGDI 612 (911)
Q Consensus 534 ~~~~~~T~LHlAc~fG~~eVv~~LLe~Gadvn-~~p~d~~G~TPLhiAa~ng~a~seVv~feyLl~~gadin~~D~~G~T 612 (911)
.+..+.||||+||..|+.+++++|++.|++.+ ....+..|+||||+||..|+ .+++ ++|+..|++++..+..|.|
T Consensus 5 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~--~~~v--~~Ll~~ga~~~~~~~~g~t 80 (282)
T 1oy3_D 5 VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGE--ASTV--EKLYAAGAGVLVAERGGHT 80 (282)
T ss_dssp CCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTC--HHHH--HHHHHTTCCSSCCCTTSCC
T ss_pred CCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHCCC--HHHH--HHHHHCCCCCCCCCCCCCC
T ss_conf 38999809999997687889999985477743100647889879999998699--9999--9999869998877989999
Q ss_pred HHHH----HHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 7773----37999999812-899999989999224567889877421058950259999886239893789999999999
Q 002539 613 TSEN----LRMQFGKLLCL-TSVSTPNYDPSNLSDISQLNSKISSLLKDENDDWDLMLKLTAEEKFSSEEVKEKLVQKLL 687 (911)
Q Consensus 613 aL~~----~~~~ivkLLl~-ga~~~~~~~~~~~~e~~~l~~~i~sl~~~d~~~~t~Ll~a~~~~~~~~~~~~~~ll~~al 687 (911)
||+. ++..++++|+. ++....... .. +...... ........+++....
T Consensus 81 pL~~A~~~~~~~~v~~Ll~~~~~~~~~~~-~~------~~~~~~~--~~~~~~~~~~~~~~~------------------ 133 (282)
T 1oy3_D 81 ALHLACRVRAHTCACVLLQPRPSHPRDAS-DT------YLTQSQD--CTPDTSHAPAAVDSQ------------------ 133 (282)
T ss_dssp HHHHHTTTTCHHHHHHHSSSCCSSCCCC----------------------------------------------------
T ss_pred HHHHHHHCCCCCHHHHHHCCCCCCCHHHH-HH------HHHCCCC--CCCCHHCCHHHHCCC------------------
T ss_conf 99999873884055764234777722467-77------7523434--585011002220135------------------
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCC-CCCHHHHHHHCCCHHHHHHHH
Q ss_conf 9756999999999499999723699993899999919976887587649974324799-971889999819999999999
Q 002539 688 KEKLQVWLVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVN-GWTALHWAAYCGRERTVASLI 766 (911)
Q Consensus 688 k~~l~~~Lv~lLle~Gadin~~D~~G~TpLHlAA~~G~~~iVklLLe~GadIN~rD~~-G~TPLH~AA~~G~~eiVklLL 766 (911)
......+...+...+.+++.++..|.||||+|+..|+.+++++|+++|++++.++.. |+||||+||..|+.++|++||
T Consensus 134 -~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll 212 (282)
T 1oy3_D 134 -PNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLL 212 (282)
T ss_dssp -----------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHH
T ss_pred -CCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHH
T ss_conf -6530000023355540577767899689999997499999999998389878888778968999998839899999999
Q ss_pred HCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 83999999889999999999999999973949999999982997864357545888990763
Q 002539 767 ALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESDLSSALSAISLNKKDGDVAEV 828 (911)
Q Consensus 767 ~~GAdinavtDpt~~D~~G~TPLhlAa~~Gh~eIvk~LLE~gl~sh~adlnlkd~~G~ta~~ 828 (911)
++||+++. +|..|+||||+|+.+|+.+++++|+++| ++++.++..|.+|..
T Consensus 213 ~~gad~~~------~d~~g~tpL~~A~~~~~~~~v~~Ll~~g-----a~~~~~~~~g~tpl~ 263 (282)
T 1oy3_D 213 KAGADPTA------RMYGGRTPLGSALLRPNPILARLLRAHG-----APEPEDGGDKLSPCS 263 (282)
T ss_dssp HTTCCTTC------CCTTSCCHHHHHHTSSCHHHHHHHHHTT-----CCCCCCC--------
T ss_pred HCCCCCCC------CCCCCCCHHHHHHHCCCCHHHHHHHHCC-----CCCCCCCCCCCCCCC
T ss_conf 75999866------4469997899999849917999999849-----985767874556543
No 6
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=1.00 E-value=1 Score=262.71 Aligned_cols=254 Identities=17% Similarity=0.136 Sum_probs=219.4
Q ss_pred CCCHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHH
Q ss_conf 65449899997399189999998899988888988997388999971998612788998871999965457999907773
Q 002539 537 QEAENCKWSCMFGEIEVPAEIVAGGVLRCHTSSQKVGRVPFYVTCSNRLSCSEVREFEYRASHIPDVDVADNCGDITSEN 616 (911)
Q Consensus 537 ~~~T~LHlAc~fG~~eVv~~LLe~Gadvn~~p~d~~G~TPLhiAa~ng~a~seVv~feyLl~~gadin~~D~~G~TaL~~ 616 (911)
++.++||+||..|+.++++.|++.|++++.. .+..|+||||+||..|+ .+++ ++|+..|++++..+..|.||++.
T Consensus 4 ~g~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~-~~~~g~t~L~~A~~~g~--~~~v--~~Ll~~g~~~~~~~~~g~t~L~~ 78 (285)
T 1wdy_A 4 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQ-EEEGGWTPLHNAVQMSR--EDIV--ELLLRHGADPVLRKKNGATPFLL 78 (285)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTTCCCHHHHHHHTTC--HHHH--HHHHHTTCCTTCCCTTCCCHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHCCCCCCCC-CCCCCCCHHHHHHHCCC--HHHH--HHHHHCCCCCCCCCCCCCCHHHH
T ss_conf 5443999999718999999999869984320-38999869999997697--9999--99997699975458789989999
Q ss_pred ----HHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf ----3799999981-28999999899992245678898774210589502599998862398937899999999999756
Q 002539 617 ----LRMQFGKLLC-LTSVSTPNYDPSNLSDISQLNSKISSLLKDENDDWDLMLKLTAEEKFSSEEVKEKLVQKLLKEKL 691 (911)
Q Consensus 617 ----~~~~ivkLLl-~ga~~~~~~~~~~~~e~~~l~~~i~sl~~~d~~~~t~Ll~a~~~~~~~~~~~~~~ll~~alk~~l 691 (911)
++.+++++|+ .+++.+.. +..++++|+.++..+...
T Consensus 79 A~~~~~~~~v~~Ll~~g~~~~~~----------------------~~~g~t~L~~A~~~~~~~----------------- 119 (285)
T 1wdy_A 79 AAIAGSVKLLKLFLSKGADVNEC----------------------DFYGFTAFMEAAVYGKVK----------------- 119 (285)
T ss_dssp HHHHTCHHHHHHHHHTTCCTTCB----------------------CTTCCBHHHHHHHTTCHH-----------------
T ss_pred HHHCCCHHHHHHHHHCCCCCCCC----------------------CCCCCCHHHHHHHHCCHH-----------------
T ss_conf 99749999999999759998765----------------------845688999999909889-----------------
Q ss_pred HHHHHHHHHHCCCCCCCC----------CCCCCCHHHHHHHCCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHCCC--
Q ss_conf 999999999499999723----------69999389999991997688758764-99743247999718899998199--
Q 002539 692 QVWLVQKAAEGGKGPCVL----------DHCGQGVLHFAAALGYDWALEPTTVA-GVNINFRDVNGWTALHWAAYCGR-- 758 (911)
Q Consensus 692 ~~~Lv~lLle~Gadin~~----------D~~G~TpLHlAA~~G~~~iVklLLe~-GadIN~rD~~G~TPLH~AA~~G~-- 758 (911)
+++.|++.|++++.. +..|.||||+|+..|+.+++++|++. |++++.+|..|+||||+|+..|+
T Consensus 120 ---~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~ 196 (285)
T 1wdy_A 120 ---ALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDS 196 (285)
T ss_dssp ---HHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTT
T ss_pred ---HHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCC
T ss_conf ---99999984899441104478888660279869999998398999999999669998754889998789999815623
Q ss_pred --HHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHH-CCCCCCCCCCCCCCCCCCCH-----HHHC
Q ss_conf --999999998399999988999999999999999997394999999998-29978643575458889907-----6311
Q 002539 759 --ERTVASLIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAE-SDLSSALSAISLNKKDGDVA-----EVTG 830 (911)
Q Consensus 759 --~eiVklLL~~GAdinavtDpt~~D~~G~TPLhlAa~~Gh~eIvk~LLE-~gl~sh~adlnlkd~~G~ta-----~~~~ 830 (911)
.+++++|+++|++++. ++..|.||||+|+..|+.+++++|++ .| ++++.++..|.+| ..+.
T Consensus 197 ~~~~i~~~Ll~~g~~~~~------~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g-----~~~~~~~~~g~t~l~~A~~~~~ 265 (285)
T 1wdy_A 197 DVEAITHLLLDHGADVNV------RGERGKTPLILAVEKKHLGLVQRLLEQEH-----IEINDTDSDGKTALLLAVELKL 265 (285)
T ss_dssp THHHHHHHHHHTTCCSSC------CCTTSCCHHHHHHHTTCHHHHHHHHHSSS-----CCTTCCCTTSCCHHHHHHHTTC
T ss_pred HHHHHHHHHHHCCCCCCC------CCCCCCCHHHHHHHCCCHHHHHHHHHCCC-----CCCCCCCCCCCCHHHHHHHCCC
T ss_conf 389999999976999988------68779868999998299999999996369-----9854508999839999998394
Q ss_pred HHHHHHHHHCCCCCCCCC
Q ss_conf 899997662599999999
Q 002539 831 ATAVQTVPQRCPTPVSDG 848 (911)
Q Consensus 831 ~~vV~~Lle~gA~~~~~~ 848 (911)
.++++.|+++|+++...+
T Consensus 266 ~~i~~~Ll~~Ga~~~~~d 283 (285)
T 1wdy_A 266 KKIAELLCKRGASTDCGD 283 (285)
T ss_dssp HHHHHHHHHHSSCSCCSS
T ss_pred HHHHHHHHHCCCCCCCCC
T ss_conf 999999997599998555
No 7
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=1.00 E-value=1 Score=262.63 Aligned_cols=223 Identities=17% Similarity=0.135 Sum_probs=184.3
Q ss_pred CCCCHHHHHHHHCCCCHHHHHHH--------HCCCCCCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCC
Q ss_conf 66544989999739918999999--------8899988888988997388999971998612788998871999965457
Q 002539 536 QQEAENCKWSCMFGEIEVPAEIV--------AGGVLRCHTSSQKVGRVPFYVTCSNRLSCSEVREFEYRASHIPDVDVAD 607 (911)
Q Consensus 536 ~~~~T~LHlAc~fG~~eVv~~LL--------e~Gadvn~~p~d~~G~TPLhiAa~ng~a~seVv~feyLl~~gadin~~D 607 (911)
..+.|+||+||..|+.++++.|+ +.|++++ ..+..|.||||+||.+|+ .+++ ++|+..|++++..+
T Consensus 123 ~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn--~~d~~g~TpL~~A~~~g~--~~iv--~~Ll~~ga~~~~~~ 196 (373)
T 2fo1_E 123 RHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVN--AMDCDENTPLMLAVLARR--RRLV--AYLMKAGADPTIYN 196 (373)
T ss_dssp SSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTT--CCCTTSCCHHHHHHHHTC--HHHH--HHHHHTTCCSCCCC
T ss_pred CCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCC--CCCCCCCCHHHHHHHCCH--HHHH--HHHHHCCCCCCCCC
T ss_conf 67988899998779877899999999999986599876--778999898999998694--9999--99997799976158
Q ss_pred CCCCHHHHH----HHHHHHHHHHCCC----CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHH
Q ss_conf 999907773----3799999981289----99999899992245678898774210589502599998862398937899
Q 002539 608 NCGDITSEN----LRMQFGKLLCLTS----VSTPNYDPSNLSDISQLNSKISSLLKDENDDWDLMLKLTAEEKFSSEEVK 679 (911)
Q Consensus 608 ~~G~TaL~~----~~~~ivkLLl~ga----~~~~~~~~~~~~e~~~l~~~i~sl~~~d~~~~t~Ll~a~~~~~~~~~~~~ 679 (911)
..|.||++. ++..++++|+... +++ ..+..++++|+.++..+...
T Consensus 197 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~----------------------~~d~~g~t~L~~A~~~~~~~----- 249 (373)
T 2fo1_E 197 KSERSALHQAAANRDFGMMVYMLNSTKLKGDIE----------------------ELDRNGMTALMIVAHNEGRD----- 249 (373)
T ss_dssp TTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTS----------------------CCCTTSCCHHHHHHHSCSTT-----
T ss_pred CCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCHH----------------------HCCCCCCCHHHHHHHHCCCC-----
T ss_conf 989879999987799889999984576556732----------------------23778997999999837834-----
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCC--------CCCCCCCHHHHHHHCCCHHHHHHHHHCC-CCCCCCCCCCCCHH
Q ss_conf 99999999975699999999949999972--------3699993899999919976887587649-97432479997188
Q 002539 680 EKLVQKLLKEKLQVWLVQKAAEGGKGPCV--------LDHCGQGVLHFAAALGYDWALEPTTVAG-VNINFRDVNGWTAL 750 (911)
Q Consensus 680 ~~ll~~alk~~l~~~Lv~lLle~Gadin~--------~D~~G~TpLHlAA~~G~~~iVklLLe~G-adIN~rD~~G~TPL 750 (911)
...+++.|++.|++++. .|..|.||||+|+..|+.++|++|++.| +++|.+|..|+|||
T Consensus 250 ------------~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL 317 (373)
T 2fo1_E 250 ------------QVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPI 317 (373)
T ss_dssp ------------HHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHH
T ss_pred ------------HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCHH
T ss_conf ------------49999999977997655554445755545888999999809999999999736898667698999899
Q ss_pred HHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCC
Q ss_conf 99998199999999998399999988999999999999999997394999999998299
Q 002539 751 HWAAYCGRERTVASLIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESDL 809 (911)
Q Consensus 751 H~AA~~G~~eiVklLL~~GAdinavtDpt~~D~~G~TPLhlAa~~Gh~eIvk~LLE~gl 809 (911)
|+|+..|+.++|++|+++||+++. +|..|.||||+|+.+|+.+++++|++.+.
T Consensus 318 ~~A~~~g~~~iv~~Ll~~gad~~~------~d~~g~t~l~~A~~~g~~~iv~~Ll~~~a 370 (373)
T 2fo1_E 318 MLAAQEGRIEVVMYLIQQGASVEA------VDATDHTARQLAQANNHHNIVDIFDRCRP 370 (373)
T ss_dssp HHHHHHTCHHHHHHHHHTTCCSSC------CCSSSCCHHHHHHHTTCHHHHHHHHTTC-
T ss_pred HHHHHCCCHHHHHHHHHCCCCCCC------CCCCCCCHHHHHHHCCCHHHHHHHHHCCC
T ss_conf 999986899999999976998547------79899999999998598889999873373
No 8
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=1.00 E-value=1 Score=262.53 Aligned_cols=249 Identities=16% Similarity=0.129 Sum_probs=208.7
Q ss_pred CCCCCHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCC-CCCCHHHHHHHHCCCCCCHHHHH------HHHHHCCCCCCCCC
Q ss_conf 866544989999739918999999889998888898-89973889999719986127889------98871999965457
Q 002539 535 SQQEAENCKWSCMFGEIEVPAEIVAGGVLRCHTSSQ-KVGRVPFYVTCSNRLSCSEVREF------EYRASHIPDVDVAD 607 (911)
Q Consensus 535 ~~~~~T~LHlAc~fG~~eVv~~LLe~Gadvn~~p~d-~~G~TPLhiAa~ng~a~seVv~f------eyLl~~gadin~~D 607 (911)
+..+.|+||+||..| .++++.|+...+ + ..+ ..|+||||+||.+|+ .+++.+ ..|+..|++++..|
T Consensus 91 ~~~g~t~L~~Aa~~~-~~~~~~L~~~~~--n--~~d~~~g~t~Lh~Aa~~g~--~~~v~~Ll~~~~~~ll~~ga~vn~~d 163 (373)
T 2fo1_E 91 EPESPIKLHTEAAGS-YAITEPITRESV--N--IIDPRHNRTVLHWIASNSS--AEKSEDLIVHEAKECIAAGADVNAMD 163 (373)
T ss_dssp ---CCCHHHHHHHSS-SCCCSCCSTTTT--T--TCCCSSCCCHHHHHHCTTC--CSCCTTHHHHHHHHHHHTCCCTTCCC
T ss_pred CCCCCCHHHHHHCCC-CHHHHHHCCCCC--C--CCCCCCCCCHHHHHHHCCC--HHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 999865799986387-168887500234--3--3577679888999987798--77899999999999986599876778
Q ss_pred CCCCHHHHH----HHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 999907773----3799999981-28999999899992245678898774210589502599998862398937899999
Q 002539 608 NCGDITSEN----LRMQFGKLLC-LTSVSTPNYDPSNLSDISQLNSKISSLLKDENDDWDLMLKLTAEEKFSSEEVKEKL 682 (911)
Q Consensus 608 ~~G~TaL~~----~~~~ivkLLl-~ga~~~~~~~~~~~~e~~~l~~~i~sl~~~d~~~~t~Ll~a~~~~~~~~~~~~~~l 682 (911)
..|.|||+. ++.+++++|+ .+++.+.. +..++++|+.++..+...
T Consensus 164 ~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~----------------------~~~g~t~L~~A~~~g~~~-------- 213 (373)
T 2fo1_E 164 CDENTPLMLAVLARRRRLVAYLMKAGADPTIY----------------------NKSERSALHQAAANRDFG-------- 213 (373)
T ss_dssp TTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCC----------------------CTTCCCHHHHHHHTTCHH--------
T ss_pred CCCCCHHHHHHHCCHHHHHHHHHHCCCCCCCC----------------------CCCCCCHHHHHHHCCCHH--------
T ss_conf 99989899999869499999999779997615----------------------898987999998779988--------
Q ss_pred HHHHHHHHHHHHHHHHHHHCC---CCCCCCCCCCCCHHHHHHHCC---CHHHHHHHHHCCCCCCC--------CCCCCCC
Q ss_conf 999999756999999999499---999723699993899999919---97688758764997432--------4799971
Q 002539 683 VQKLLKEKLQVWLVQKAAEGG---KGPCVLDHCGQGVLHFAAALG---YDWALEPTTVAGVNINF--------RDVNGWT 748 (911)
Q Consensus 683 l~~alk~~l~~~Lv~lLle~G---adin~~D~~G~TpLHlAA~~G---~~~iVklLLe~GadIN~--------rD~~G~T 748 (911)
+++.|++.+ ++++..|..|.||||+|+..| +.+++++|++.|++++. +|..|+|
T Consensus 214 ------------~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t 281 (373)
T 2fo1_E 214 ------------MMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRT 281 (373)
T ss_dssp ------------HHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCC
T ss_pred ------------HHHHHHHCCCCCCCHHHCCCCCCCHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
T ss_conf ------------99999845765567322377899799999983783449999999977997655554445755545888
Q ss_pred HHHHHHHCCCHHHHHHHHHCC-CCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCH-
Q ss_conf 889999819999999999839-999998899999999999999999739499999999829978643575458889907-
Q 002539 749 ALHWAAYCGRERTVASLIALG-AAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESDLSSALSAISLNKKDGDVA- 826 (911)
Q Consensus 749 PLH~AA~~G~~eiVklLL~~G-AdinavtDpt~~D~~G~TPLhlAa~~Gh~eIvk~LLE~gl~sh~adlnlkd~~G~ta- 826 (911)
|||+||..|+.++|++||+.| ++++. +|..|.||||+|+..|+.+++++|++.| ++++.+|..|.++
T Consensus 282 ~Lh~A~~~g~~~~v~~Ll~~~~~~~n~------~d~~g~TpL~~A~~~g~~~iv~~Ll~~g-----ad~~~~d~~g~t~l 350 (373)
T 2fo1_E 282 ALHYAAQVSNMPIVKYLVGEKGSNKDK------QDEDGKTPIMLAAQEGRIEVVMYLIQQG-----ASVEAVDATDHTAR 350 (373)
T ss_dssp THHHHHSSCCHHHHHHHHHHSCCCTTC------CCTTCCCHHHHHHHHTCHHHHHHHHHTT-----CCSSCCCSSSCCHH
T ss_pred HHHHHHHHCCHHHHHHHHHHCCCCCCC------CCCCCCCHHHHHHHCCCHHHHHHHHHCC-----CCCCCCCCCCCCHH
T ss_conf 999999809999999999736898667------6989998999999868999999999769-----98547798999999
Q ss_pred ----HHHCHHHHHHHHHCCCC
Q ss_conf ----63118999976625999
Q 002539 827 ----EVTGATAVQTVPQRCPT 843 (911)
Q Consensus 827 ----~~~~~~vV~~Lle~gA~ 843 (911)
..+..++++.|++.+++
T Consensus 351 ~~A~~~g~~~iv~~Ll~~~a~ 371 (373)
T 2fo1_E 351 QLAQANNHHNIVDIFDRCRPE 371 (373)
T ss_dssp HHHHHTTCHHHHHHHHTTC--
T ss_pred HHHHHCCCHHHHHHHHHCCCC
T ss_conf 999985988899998733734
No 9
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=1.00 E-value=1 Score=262.40 Aligned_cols=271 Identities=19% Similarity=0.101 Sum_probs=208.9
Q ss_pred CCCCCHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHH
Q ss_conf 86654498999973991899999988999888889889973889999719986127889988719999654579999077
Q 002539 535 SQQEAENCKWSCMFGEIEVPAEIVAGGVLRCHTSSQKVGRVPFYVTCSNRLSCSEVREFEYRASHIPDVDVADNCGDITS 614 (911)
Q Consensus 535 ~~~~~T~LHlAc~fG~~eVv~~LLe~Gadvn~~p~d~~G~TPLhiAa~ng~a~seVv~feyLl~~gadin~~D~~G~TaL 614 (911)
+..+.||||+||..|+.+++++|++.|++++ ..+..|.||||+||..|+ .+++ ++|+..|++++..+..|.||+
T Consensus 55 d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~--~~~~~g~t~L~~A~~~g~--~~iv--~~Ll~~g~~~~~~~~~g~t~L 128 (351)
T 3utm_A 55 DGRKSTPLHLAAGYNRVRIVQLLLQHGADVH--AKDKGGLVPLHNACSYGH--YEVT--ELLLKHGACVNAMDLWQFTPL 128 (351)
T ss_dssp STTCCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTCCCHHHHHHHTTC--HHHH--HHHHHTTCCTTCCCTTCCCHH
T ss_pred CCCCCCHHHHHHHCCCHHHHHHHHHCCCCCC--CCCCCCCCHHHHHHHCCC--HHHH--HHHHHCCCCCCCCCCCCCCHH
T ss_conf 9999889999998599999999997699997--617999808999997788--9999--999977999997788899899
Q ss_pred HH----HHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCH--HHHHHHHHHHHH
Q ss_conf 73----3799999981-2899999989999224567889877421058950259999886239893--789999999999
Q 002539 615 EN----LRMQFGKLLC-LTSVSTPNYDPSNLSDISQLNSKISSLLKDENDDWDLMLKLTAEEKFSS--EEVKEKLVQKLL 687 (911)
Q Consensus 615 ~~----~~~~ivkLLl-~ga~~~~~~~~~~~~e~~~l~~~i~sl~~~d~~~~t~Ll~a~~~~~~~~--~~~~~~ll~~al 687 (911)
+. ++.+++++|+ .+++...... .+.++++.+...+.... .......+..++
T Consensus 129 ~~A~~~~~~~~v~~Ll~~g~~~~~~~~----------------------~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~ 186 (351)
T 3utm_A 129 HEAASKNRVEVCSLLLSHGADPTLVNC----------------------HGKSAVDMAPTPELRERLTYEFKGHSLLQAA 186 (351)
T ss_dssp HHHHHTTCHHHHHHHHHTTCCTTCCCT----------------------TSCCHHHHCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHCCCCCCCCCC----------------------CCCCCHHHHHHHHHHHHHHHHHCCCHHHHHH
T ss_conf 999974999999999976999863367----------------------8986237775332589998640421799999
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHC---CCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHH
Q ss_conf 975699999999949999972369999389999991---99768875876499743247999718899998199999999
Q 002539 688 KEKLQVWLVQKAAEGGKGPCVLDHCGQGVLHFAAAL---GYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVAS 764 (911)
Q Consensus 688 k~~l~~~Lv~lLle~Gadin~~D~~G~TpLHlAA~~---G~~~iVklLLe~GadIN~rD~~G~TPLH~AA~~G~~eiVkl 764 (911)
...... .+..++..+......+..|.||||+|+.. +..+++++|++.|+++|.+|..|+||||+|+..|+.++|++
T Consensus 187 ~~~~~~-~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~ 265 (351)
T 3utm_A 187 READLA-KVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEV 265 (351)
T ss_dssp HTTCHH-HHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHH
T ss_pred HHCCHH-HHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHH
T ss_conf 832499-9999997000133578889988999999717558999999997599967769999989999998598989999
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCH-HHHCHHHHHHHHHCCCC
Q ss_conf 99839999998899999999999999999739499999999829978643575458889907-63118999976625999
Q 002539 765 LIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESDLSSALSAISLNKKDGDVA-EVTGATAVQTVPQRCPT 843 (911)
Q Consensus 765 LL~~GAdinavtDpt~~D~~G~TPLhlAa~~Gh~eIvk~LLE~gl~sh~adlnlkd~~G~ta-~~~~~~vV~~Lle~gA~ 843 (911)
|+++|++++. +|..|+||||+|+..|+.+++++|++.| +++++++..|.+| ..+...+++.|.+....
T Consensus 266 Ll~~ga~~n~------~d~~g~t~L~~A~~~~~~~~v~~Ll~~g-----ad~~~~~~~g~tal~~a~~~~~~~l~~~~~~ 334 (351)
T 3utm_A 266 LHKHGAKMNA------LDSLGQTALHRAALAGHLQTCRLLLSYG-----SDPSIISLQGFTAAQMGNEAVQQILSESTPM 334 (351)
T ss_dssp HHHTTCCTTC------CCTTSCCHHHHHHHHTCHHHHHHHHHTT-----CCTTCCCTTSCCHHHHSCHHHHHHHHHC---
T ss_pred HHHCCCCCCC------CCCCCCCHHHHHHHCCCHHHHHHHHHCC-----CCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC
T ss_conf 9987999877------5999998899999828599999999849-----9988868899883656369999998760622
Q ss_pred CC
Q ss_conf 99
Q 002539 844 PV 845 (911)
Q Consensus 844 ~~ 845 (911)
..
T Consensus 335 ~~ 336 (351)
T 3utm_A 335 RT 336 (351)
T ss_dssp --
T ss_pred CC
T ss_conf 36
No 10
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=262.37 Aligned_cols=213 Identities=17% Similarity=0.072 Sum_probs=125.3
Q ss_pred CCCCCCHHHHHHHHCCCCHHHHHHHHCCCCCC------CCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCC
Q ss_conf 68665449899997399189999998899988------888988997388999971998612788998871999965457
Q 002539 534 MSQQEAENCKWSCMFGEIEVPAEIVAGGVLRC------HTSSQKVGRVPFYVTCSNRLSCSEVREFEYRASHIPDVDVAD 607 (911)
Q Consensus 534 ~~~~~~T~LHlAc~fG~~eVv~~LLe~Gadvn------~~p~d~~G~TPLhiAa~ng~a~seVv~feyLl~~gadin~~D 607 (911)
.+.++.++|++||..|++++|++||+.|+... ....+..|.|||+.|+..+.. ..++ ++|+..|+++|..|
T Consensus 7 kd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~-~~~v--~~Ll~~Gadvn~~d 83 (269)
T 4b93_B 7 KDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPA-QKRL--AKVPASGLGVNVTS 83 (269)
T ss_dssp CCCHHHHHHHHHHHTTCHHHHHHHHTCC-------------------------------------------CCCCTTCCC
T ss_pred CCCCCHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCH-HHHH--HHHHHCCCCCCCCC
T ss_conf 57314249999998299999999997788421121122224586677899999984998-9999--99998799988769
Q ss_pred CCCCHHHHH----HHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 999907773----3799999981-28999999899992245678898774210589502599998862398937899999
Q 002539 608 NCGDITSEN----LRMQFGKLLC-LTSVSTPNYDPSNLSDISQLNSKISSLLKDENDDWDLMLKLTAEEKFSSEEVKEKL 682 (911)
Q Consensus 608 ~~G~TaL~~----~~~~ivkLLl-~ga~~~~~~~~~~~~e~~~l~~~i~sl~~~d~~~~t~Ll~a~~~~~~~~~~~~~~l 682 (911)
..|.|||+. ++.+++++|+ .+++..... ..++++++.++..+...
T Consensus 84 ~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~----------------------~~g~t~l~~a~~~~~~~-------- 133 (269)
T 4b93_B 84 QDGSSPLHVAALHGRADLIPLLLKHGANAGARN----------------------ADQAVPLHLACQQGHFQ-------- 133 (269)
T ss_dssp TTSCCHHHHHHHTTCTTHHHHHHHTTCCTTCCC----------------------TTCCCHHHHHHHHTCHH--------
T ss_pred CCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCC----------------------CCCCCCCCCCCCCCHHH--------
T ss_conf 999999999998496999999986599867557----------------------89998330000127299--------
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHH
Q ss_conf 99999975699999999949999972369999389999991997688758764997432479997188999981999999
Q 002539 683 VQKLLKEKLQVWLVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTV 762 (911)
Q Consensus 683 l~~alk~~l~~~Lv~lLle~Gadin~~D~~G~TpLHlAA~~G~~~iVklLLe~GadIN~rD~~G~TPLH~AA~~G~~eiV 762 (911)
+++.|++.|++++.+|..|+||||+|+..|+.++|++||++|+++|.+|..|+||||+||..|+.++|
T Consensus 134 ------------~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v 201 (269)
T 4b93_B 134 ------------VVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVV 201 (269)
T ss_dssp ------------HHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHH
T ss_pred ------------HHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHH
T ss_conf ------------99999987999887789999999999987899999999978799783214788389999986889999
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHCCC
Q ss_conf 99998399999988999999999999999997394
Q 002539 763 ASLIALGAAPGALSDPTPKYPSGRTPADLASSIGH 797 (911)
Q Consensus 763 klLL~~GAdinavtDpt~~D~~G~TPLhlAa~~Gh 797 (911)
++||++|||+++ +|..|+||||+|+.+|+
T Consensus 202 ~~Ll~~Gad~~~------~d~~G~TpL~~A~~~~~ 230 (269)
T 4b93_B 202 ELLLLHGASVQV------LNKRQRTAVDCAEQNSK 230 (269)
T ss_dssp HHHHHTTCCSCC------CCTTSCCSGGGSCTTCH
T ss_pred HHHHHCCCCCCC------CCCCCCCHHHHHHHCCC
T ss_conf 999987889988------69999999999883784
Done!