BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002540
(911 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1KVP|A Chain A, Structural Analysis Of The Spiroplasma Virus, Spv4,
Implications For Evolutionary Variation To Obtain Host
Diversity Among The Microviridae, Electron Microscopy,
Alpha Carbons Only
Length = 497
Score = 36.6 bits (83), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 50/123 (40%), Gaps = 18/123 (14%)
Query: 554 SGRRVFGPVKREVLVPSKKIETDNYYGNSDSEGDLEAEANMDAGNGTNNDVQKNVKTDSF 613
+G+ GPV LV + N E + + D N T+ D+ ++
Sbjct: 219 TGQLGIGPVDAGFLVAQNTAQAAN------GERAIPSNLWADLSNATSIDIM-GLQAAYA 271
Query: 614 TLHVDHESHPDSVFKSFEDVVRDPGPKTSYD-----VAIFASGTWKKQMKSGNDVDANNE 668
LH D E D + + DV+ G KTSYD + + S W SG DVD ++
Sbjct: 272 NLHTDQER--DYFMQRYRDVISSFGGKTSYDADNRPLLVMRSNLW----ASGYDVDGTDQ 325
Query: 669 KSM 671
S+
Sbjct: 326 TSL 328
>pdb|2AWF|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G1
Length = 172
Score = 33.9 bits (76), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 45/105 (42%), Gaps = 17/105 (16%)
Query: 146 DNDERHLRMLQGVTGMPSEFFEGKKKKKNVVISEAYP---------ESEFNPTRDVLDGN 196
DND +L + G P +EG K ++ + YP ++P +D N
Sbjct: 44 DNDLYRWEVL--IIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPN---VDKN 98
Query: 197 GQISIDDLLEPLQGKSGYSKLRKR---MHQMRKKSTSVLAPLPKP 238
G + I L EP + K GY K +R +H + SV++ L P
Sbjct: 99 GDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADP 143
>pdb|2BPA|1 Chain 1, Atomic Structure Of Single-Stranded Dna Bacteriophage
Phix174 And Its Functional Implications
pdb|1AL0|F Chain F, Procapsid Of Bacteriophage Phix174
Length = 426
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 11/62 (17%)
Query: 615 LHVDHESHPDSVFKSFEDVVRDPGPKTSYD-----VAIFASGTWKKQMKSGNDVDANNEK 669
LH D E D + + DV+ G KTSYD + + S W SG DVD ++
Sbjct: 202 LHTDQER--DYFMQRYRDVISSFGGKTSYDADNRPLLVMRSNLW----ASGYDVDGTDQT 255
Query: 670 SM 671
S+
Sbjct: 256 SL 257
>pdb|1CD3|F Chain F, Procapsid Of Bacteriophage Phix174
Length = 426
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 11/62 (17%)
Query: 615 LHVDHESHPDSVFKSFEDVVRDPGPKTSYD-----VAIFASGTWKKQMKSGNDVDANNEK 669
LH D E D + + DV+ G KTSYD + + S W SG DVD ++
Sbjct: 202 LHTDQER--DYFMQRYRDVISSFGGKTSYDADNRPLLVMRSNLW----ASGYDVDGTDQT 255
Query: 670 SM 671
S+
Sbjct: 256 SL 257
>pdb|2XWI|A Chain A, Siap R147k Mutant In Complex With Neu5ac
Length = 308
Score = 29.6 bits (65), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 47 PNSLRKEIDRLNTNSLNGSDEDIGSDEARDFYEYEEPLPQEESRKNRRFDPVENYEY-EL 105
P + + L TN+++G + + + +A+ FYE ++ L N + V N Y EL
Sbjct: 167 PMAFSEVYLALQTNAVDGQENPLAAVQAQKFYEVQKFLAMTNHILNDQLYLVSNETYKEL 226
Query: 106 PE 107
PE
Sbjct: 227 PE 228
>pdb|2V4C|A Chain A, Structure Of Sialic Acid Binding Protein (Siap) In The
Presence Of Kdn
Length = 309
Score = 29.6 bits (65), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 47 PNSLRKEIDRLNTNSLNGSDEDIGSDEARDFYEYEEPLPQEESRKNRRFDPVENYEY-EL 105
P + + L TN+++G + + + +A+ FYE ++ L N + V N Y EL
Sbjct: 167 PMAFSEVYLALQTNAVDGQENPLAAVQAQKFYEVQKFLAMTNHILNDQLYLVSNETYKEL 226
Query: 106 PE 107
PE
Sbjct: 227 PE 228
>pdb|4EJ2|A Chain A, Crystal Structure Of Gpb In Complex With Dk10
pdb|4EKE|A Chain A, Crystal Structure Of Gpb In Complex With Dk11
pdb|4EKY|A Chain A, Crystal Structure Of Gpb In Complex With Dk15
pdb|4EL0|A Chain A, Crystal Structure Of Gpb In Complex With Dk16
pdb|4EL5|A Chain A, Crystal Structure Of Gpb In Complex With Dk12
Length = 825
Score = 29.6 bits (65), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 24/42 (57%)
Query: 379 VEMLMDPEAAKEEARKQEFKRAEERMTLKHKNSSRWAKRILK 420
V MLM + K A +E+ + +ER++ +KN W + +++
Sbjct: 751 VNMLMHHDRFKVFADYEEYVKCQERVSALYKNPREWTRMVIR 792
>pdb|2XWK|A Chain A, Siap R147a Mutant In Complex With Neu5ac
Length = 312
Score = 29.6 bits (65), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 47 PNSLRKEIDRLNTNSLNGSDEDIGSDEARDFYEYEEPLPQEESRKNRRFDPVENYEY-EL 105
P + + L TN+++G + + + +A+ FYE ++ L N + V N Y EL
Sbjct: 167 PMAFSEVYLALQTNAVDGQENPLAAVQAQKFYEVQKFLAMTNHILNDQLYLVSNETYKEL 226
Query: 106 PE 107
PE
Sbjct: 227 PE 228
>pdb|1C50|A Chain A, Identification And Structural Characterization Of A Novel
Allosteric Binding Site Of Glycogen Phosphorylase B
Length = 830
Score = 29.6 bits (65), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 24/42 (57%)
Query: 379 VEMLMDPEAAKEEARKQEFKRAEERMTLKHKNSSRWAKRILK 420
V MLM + K A +E+ + +ER++ +KN W + +++
Sbjct: 750 VNMLMHHDRFKVFADYEEYVKCQERVSALYKNPREWTRMVIR 791
>pdb|2GM9|A Chain A, Structure Of Rabbit Muscle Glycogen Phosphorylase In
Complex With Thienopyrrole
Length = 825
Score = 29.6 bits (65), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 24/42 (57%)
Query: 379 VEMLMDPEAAKEEARKQEFKRAEERMTLKHKNSSRWAKRILK 420
V MLM + K A +E+ + +ER++ +KN W + +++
Sbjct: 751 VNMLMHHDRFKVFADYEEYVKCQERVSALYKNPREWTRMVIR 792
>pdb|2GJ4|A Chain A, Structure Of Rabbit Muscle Glycogen Phosphorylase In
Complex With Ligand
Length = 824
Score = 29.6 bits (65), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 24/42 (57%)
Query: 379 VEMLMDPEAAKEEARKQEFKRAEERMTLKHKNSSRWAKRILK 420
V MLM + K A +E+ + +ER++ +KN W + +++
Sbjct: 751 VNMLMHHDRFKVFADYEEYVKCQERVSALYKNPREWTRMVIR 792
>pdb|2FFR|A Chain A, Crystallographic Studies On
N-Azido-Beta-D-Glucopyranosylamine, An Inhibitor Of
Glycogen Phosphorylase: Comparison With N-Acetyl-Beta-D-
Glucopyranosylamine
Length = 825
Score = 29.6 bits (65), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 24/42 (57%)
Query: 379 VEMLMDPEAAKEEARKQEFKRAEERMTLKHKNSSRWAKRILK 420
V MLM + K A +E+ + +ER++ +KN W + +++
Sbjct: 751 VNMLMHHDRFKVFADYEEYVKCQERVSALYKNPREWTRMVIR 792
>pdb|2WYK|A Chain A, Siap In Complex With Neu5gc
Length = 308
Score = 29.6 bits (65), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 47 PNSLRKEIDRLNTNSLNGSDEDIGSDEARDFYEYEEPLPQEESRKNRRFDPVENYEY-EL 105
P + + L TN+++G + + + +A+ FYE ++ L N + V N Y EL
Sbjct: 167 PMAFSEVYLALQTNAVDGQENPLAAVQAQKFYEVQKFLAMTNHILNDQLYLVSNETYKEL 226
Query: 106 PE 107
PE
Sbjct: 227 PE 228
>pdb|1ABB|A Chain A, Control Of Phosphorylase B Conformation By A Modified
Cofactor: Crystallographic Studies On R-State Glycogen
Phosphorylase Reconstituted With Pyridoxal
5'-Diphosphate
pdb|1ABB|B Chain B, Control Of Phosphorylase B Conformation By A Modified
Cofactor: Crystallographic Studies On R-State Glycogen
Phosphorylase Reconstituted With Pyridoxal
5'-Diphosphate
pdb|1ABB|C Chain C, Control Of Phosphorylase B Conformation By A Modified
Cofactor: Crystallographic Studies On R-State Glycogen
Phosphorylase Reconstituted With Pyridoxal
5'-Diphosphate
pdb|1ABB|D Chain D, Control Of Phosphorylase B Conformation By A Modified
Cofactor: Crystallographic Studies On R-State Glycogen
Phosphorylase Reconstituted With Pyridoxal
5'-Diphosphate
Length = 828
Score = 29.6 bits (65), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 24/42 (57%)
Query: 379 VEMLMDPEAAKEEARKQEFKRAEERMTLKHKNSSRWAKRILK 420
V MLM + K A +E+ + +ER++ +KN W + +++
Sbjct: 753 VNMLMHHDRFKVFADYEEYVKCQERVSALYKNPREWTRMVIR 794
>pdb|1NOI|A Chain A, Complex Of Glycogen Phosphorylase With A Transition State
Analogue Nojirimycin Tetrazole And Phosphate In The T
And R States
pdb|1NOI|B Chain B, Complex Of Glycogen Phosphorylase With A Transition State
Analogue Nojirimycin Tetrazole And Phosphate In The T
And R States
pdb|1NOI|C Chain C, Complex Of Glycogen Phosphorylase With A Transition State
Analogue Nojirimycin Tetrazole And Phosphate In The T
And R States
pdb|1NOI|D Chain D, Complex Of Glycogen Phosphorylase With A Transition State
Analogue Nojirimycin Tetrazole And Phosphate In The T
And R States
pdb|1NOJ|A Chain A, Complex Of Glycogen Phosphorylase With A Transition State
Analogue Nojirimycin Tetrazole And Phosphate In The T
State
pdb|1NOK|A Chain A, Complex Of Glycogen Phosphorylase With A Transition State
Analogue Nojirimycin Tetrazole And Phosphate In The T
State
Length = 842
Score = 29.6 bits (65), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 24/42 (57%)
Query: 379 VEMLMDPEAAKEEARKQEFKRAEERMTLKHKNSSRWAKRILK 420
V MLM + K A +E+ + +ER++ +KN W + +++
Sbjct: 762 VNMLMHHDRFKVFADYEEYVKCQERVSALYKNPREWTRMVIR 803
>pdb|3NC4|A Chain A, The Binding Of Beta-D-Glucopyranosyl-Thiosemicarbazone
Derivatives To Glycogen Phosphorylase: A New Class Of
Inhibitors
Length = 841
Score = 29.6 bits (65), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 24/42 (57%)
Query: 379 VEMLMDPEAAKEEARKQEFKRAEERMTLKHKNSSRWAKRILK 420
V MLM + K A +E+ + +ER++ +KN W + +++
Sbjct: 761 VNMLMHHDRFKVFADYEEYVKCQERVSALYKNPREWTRMVIR 802
>pdb|2G9Q|A Chain A, The Crystal Structure Of The Glycogen Phosphorylase B- 1ab
Complex
pdb|2G9R|A Chain A, The Crystal Structure Of Glycogen Phosphorylase B In
Complex With (3r,
4r,5r)-5-Hydroxymethyl-1-(3-Phenylpropyl)-Piperidine-3,
4-Diol
pdb|2G9U|A Chain A, The Crystal Structure Of Glycogen Phosphorylase In Complex
With (3r,
4r,5r)-5-Hydroxymethyl-1-(3-Phenylpropyl)-Piperidine-3,
4-Diol And Phosphate
pdb|2G9V|A Chain A, The Crystal Structure Of Glycogen Phosphorylase In Complex
With (3r, 4r,5r)-5-Hydroxymethylpiperidine-3,4-Diol And
Phosphate
pdb|2OFF|A Chain A, The Crystal Structure Of Glycogen Phosphorylase B In
Complex With A Potent Allosteric Inhibitor
pdb|2QN1|A Chain A, Glycogen Phosphorylase B In Complex With Asiatic Acid
pdb|2QN2|A Chain A, Glycogen Phosphorylase B In Complex With Maslinic Acid
pdb|2QLM|A Chain A, Glycogen Phosphorylase In Complex With Fn67
pdb|2QLN|A Chain A, Glycogen Phosphorylase B In Complex With
N-4-Phenylbenzoyl- N'-Beta-D-Glucopyranosyl Urea
pdb|2QN3|A Chain A, Glycogen Phosphorylase In Complex With
N-4-Chlorobenzoyl-N- Beta-D-Glucopyranosyl Urea
pdb|2QNB|A Chain A, Glycogen Phosphorylase B In Complex With
N-Benzoyl-N'-Beta- D-Glucopyranosyl Urea
pdb|2QRM|A Chain A, Glycogen Phosphorylase B In Complex With (1r)-3'-(4-
Nitrophenyl)-Spiro[1,5-Anhydro-D-Glucitol-1,
5'-Isoxazoline]
pdb|2QRP|A Chain A, Glycogen Phosphorylase B In Complex With (1r)-3'-(2-
Naphthyl)-Spiro[1,5-Anhydro-D-Glucitol-1,5'-Isoxazoline]
pdb|2QRQ|A Chain A, Glycogen Phosphorylase B In Complex With (1r)-3'-(4-
Methylphenyl)-Spiro[1,5-Anhydro-D-Glucitol-1,5'-
Isoxazoline]
pdb|2QRG|A Chain A, Glycogen Phosphorylase B In Complex With (1r)-3'-(4-
Methoxyphenyl)-Spiro[1,5-Anhydro-D-Glucitol-1,5'-
Isoxazoline]
pdb|2QRH|A Chain A, Glycogen Phosphorylase B In Complex With (1r)-3'-
Phenylspiro[1,5-Anhydro-D-Glucitol-1,5'-Isoxazoline]
pdb|3BCR|A Chain A, Glycogen Phosphorylase B In Complex With Azt
pdb|3BCS|A Chain A, Glycogen Phosphorylase Complex With 1(-D-Glucopyranosyl)
Uracil
pdb|3BCU|A Chain A, Glucogen Phosphorylase Complex With Thymidine
pdb|3BD6|A Chain A, Glycogen Phosphorylase Complex With 1(-D-Ribofuranosyl)
Cyanuric Acid
pdb|3E3L|A Chain A, The R-state Glycogen Phosphorylase
pdb|3E3L|B Chain B, The R-state Glycogen Phosphorylase
pdb|3E3L|C Chain C, The R-state Glycogen Phosphorylase
pdb|3E3L|D Chain D, The R-state Glycogen Phosphorylase
pdb|3CUT|A Chain A, Crystal Structure Of Glycogen Phosphorylase B In Complex
With N-(-D-Glucopyranosyl)-N'-(2-Naphthyl)oxamide
pdb|3CUU|A Chain A, Crystal Structure Of Glycogen Phosphorylase B In Complex
With N-(-D-Glucopyranosyl)-N'-(2-Naphthyl)oxamides
pdb|3CUV|A Chain A, Tracking Structure Activity Relationships Of Glycogen
Phosphorylase Inhibitors: Synthesis, Kinetic And
Crystallographic Evaluation Of Analogues Of N-(-D-
Glucopyranosyl)-N'-Oxamides
pdb|3CUW|A Chain A, Crystal Structure Of Glycogen Phosphorylase B In Complex
With N-(-D-Glucopyranosyl)-N'-(2-Naphthyl)oxamides
pdb|3E3N|A Chain A, The Glycogen Phosphorylase B R State- Amp Complex
pdb|3E3N|B Chain B, The Glycogen Phosphorylase B R State- Amp Complex
pdb|3E3N|C Chain C, The Glycogen Phosphorylase B R State- Amp Complex
pdb|3E3N|D Chain D, The Glycogen Phosphorylase B R State- Amp Complex
pdb|3E3N|E Chain E, The Glycogen Phosphorylase B R State- Amp Complex
pdb|3E3N|F Chain F, The Glycogen Phosphorylase B R State- Amp Complex
pdb|3E3N|G Chain G, The Glycogen Phosphorylase B R State- Amp Complex
pdb|3E3N|H Chain H, The Glycogen Phosphorylase B R State- Amp Complex
pdb|3EBO|A Chain A, Glycogen Phosphorylase B/chrysin Complex
pdb|3EBP|A Chain A, Glycogen Phosphorylase B/flavopiridol Complex
pdb|3G2H|A Chain A, Crystal Structure Of 1-(Beta-D-Glucopyranosyl)-4-
Substituted-1,2,3-Triazoles In Complex With Glycogen
Phosphorylase
pdb|3G2I|A Chain A, Crystal Structure Of 1-(Beta-D-Glucopyranosyl)-4-
Substituted-1,2,3-Triazole
pdb|3G2J|A Chain A, Crystal Structure Of 1-(Beta-D-Glucopyranosyl)-4-
Substituted-1,2,3-Triazoles In Complex With Glycogen
Phosphorylase
pdb|3G2K|A Chain A, Crystal Structure Of 1-(Beta-D-Glucopyranosyl)-4-
Substituted-1,2,3-Triazole
pdb|3G2L|A Chain A, Crystal Structure Of 1-(Beta-D-Glucopyranosyl)-4-
Substituted-1,2,3-Triazoles In Complex With Glycogen
Phosphorylase
pdb|3G2N|A Chain A, Crystal Structure Of N-Acylglucosylamine With Glycogen
Phosphorylase
pdb|3MQF|A Chain A, Glycogen Phosphorylase Complexed With
4-Fluorobenzaldehyde-4-(Beta-D-
Glucopyranosyl)-Thiosemicarbazone
pdb|3MRT|A Chain A, Glycogen Phosphorylase Complexed With
4-Pyridinecarboxaldehyde-4- (Beta-D-Glucopyranosyl)
Thiosemicarbazone
pdb|3MRV|A Chain A, Glycogen Phosphorylase Complexed With
3-Hydroxybenzaldehyde-4-(Beta-D- Glucopyranosyl)
Thiosemicarbazone
pdb|3MRX|A Chain A, Glycogen Phosphorylase Complexed With
4-Methoxybenzaldehyde-4-(2,3,4,
6-Tetra-O-Acetyl-Beta-D-Glucopyranosyl)-
Thiosemicarbazone
pdb|3MS2|A Chain A, Glycogen Phosphorylase Complexed With
4-Methylbenzaldehyde-4-(Beta-D- Glucopyranosyl)
Thiosemicarbazone
pdb|3MS4|A Chain A, Glycogen Phosphorylase Complexed With
4-Trifluoromethylbenzaldehyde-4-
(Beta-D-Glucopyranosyl)-Thiosemicarbazone
pdb|3MS7|A Chain A, Glycogen Phosphorylase Complexed With
2-Chlorobenzaldehyde-4-(2,3,4,6-
Tetra-O-Acetyl-Beta-D-Glucopyranosyl) Thiosemicarbazone
pdb|3MT7|A Chain A, Glycogen Phosphorylase Complexed With
4-Bromobenzaldehyde-4-(Beta-D-
Glucopyranosyl)-Thiosemicarbazone
pdb|3MT8|A Chain A, Glycogen Phosphorylase Complexed With
4-Chlorobenzaldehyde-4-(Beta-D-
Glucopyranosyl)-Thiosemicarbazone
pdb|3MT9|A Chain A, Glycogen Phosphorylase Complexed With
4-Nitrobenzaldehyde-4-(Beta-D-
Glucopyranosyl)-Thiosemicarbazone
pdb|3MTA|A Chain A, Glycogen Phosphorylase Complexed With
3-Bromobenzaldehyde-4-(Beta-D-
Glucopyranosyl)-Thiosemicarbazone
pdb|3MTB|A Chain A, Glycogen Phosphorylase Complexed With
3-Chlorobenzaldehyde-4-(Beta-D-
Glucopyranosyl)-Thiosemicarbazone
pdb|3MTD|A Chain A, Glycogen Phosphorylase Complexed With
4-Hydroxybenzaldehyde-4-(Beta-D-
Glucopyranosyl)-Thiosemicarbazone
pdb|3MSC|A Chain A, Glycogen Phosphorylase Complexed With
2-Nitrobenzaldehyde-4-(Beta-D-
Glucopyranosyl)-Thiosemicarbazone
pdb|3NP7|A Chain A, Glycogen Phosphorylase Complexed With
2,5-Dihydroxy-3-(Beta-D- Glucopyranosyl)-Chlorobenzene
And 2,5-Dihydroxy-4-(Beta-D-
Glucopyranosyl)-Chlorobenzene
pdb|3NP9|A Chain A, Glycogen Phosphorylase Complexed With
3-(Beta-D-Glucopyranosyl)-2-
Hydroxy-5-Methoxy-Chlorobenzene
pdb|3NPA|A Chain A, Glycogen Phosphorylase Complexed With
2,5-Dihydroxy-4-(Beta-D- Glucopyranosyl)-Bromo-Benzene
pdb|3S0J|A Chain A, The Crystal Structure Of Glycogen Phosphorylase B In
Complex With 2,5-
Dihydroxy-4-(Beta-D-Glucopyranosyl)-Chlorobenzene
pdb|3SYM|A Chain A, Glycogen Phosphorylase B In Complex With 3
-C-(Hydroxymethyl)-Beta-D- Glucopyranonucleoside Of
5-Fluorouracil
pdb|3SYR|A Chain A, Glycogen Phosphorylase B In Complex With
Beta-D-Glucopyranonucleoside 5-Fluorouracil
pdb|3T3D|A Chain A, Glycogen Phosphorylase B In Complex With Glcu
pdb|3T3E|A Chain A, Glycogen Phosphorylase B In Complex With Glcclu
pdb|3T3G|A Chain A, Glycogen Phosphorylase B In Complex With Glcbru
pdb|3T3H|A Chain A, Glycogen Phosphorylase B In Complex With Glciu
pdb|3T3I|A Chain A, Glycogen Phosphorylase B In Complex With Glccf3u
Length = 842
Score = 29.3 bits (64), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 24/42 (57%)
Query: 379 VEMLMDPEAAKEEARKQEFKRAEERMTLKHKNSSRWAKRILK 420
V MLM + K A +E+ + +ER++ +KN W + +++
Sbjct: 762 VNMLMHHDRFKVFADYEEYVKCQERVSALYKNPREWTRMVIR 803
>pdb|1PYG|A Chain A, Structural Basis For The Activation Of Glycogen
Phosphorylase B By Adenosine Monophosphate
pdb|1PYG|B Chain B, Structural Basis For The Activation Of Glycogen
Phosphorylase B By Adenosine Monophosphate
pdb|1PYG|C Chain C, Structural Basis For The Activation Of Glycogen
Phosphorylase B By Adenosine Monophosphate
pdb|1PYG|D Chain D, Structural Basis For The Activation Of Glycogen
Phosphorylase B By Adenosine Monophosphate
pdb|2AMV|A Chain A, The Structure Of Glycogen Phosphorylase B With An Alkyl-
Dihydropyridine-Dicarboxylic Acid
pdb|1E1Y|A Chain A, Flavopiridol Inhibits Glycogen Phosphorylase By Binding At
The Inhibitor Site
pdb|1UZU|A Chain A, Glycogen Phosphorylase B In Complex With Indirubin-5'-
Sulphonate
pdb|1XC7|A Chain A, Binding Of Beta-D-Glucopyranosyl Bismethoxyphosphoramidate
To Glycogen Phosphorylase B: Kinetic And
Crystallographic Studies
pdb|1XKX|A Chain A, Kinetic And Crystallographic Studies On
2-(Beta-D-Glucopyranosyl)-5-
Methyl-1,3,4-Oxadiazole,-Benzothiazole,
And-Benzimidazole, Inhibitors Of Muscle Glycogen
Phosphorylase B. Evidence For A New Binding Site.
pdb|1XL0|A Chain A, Kinetic And Crystallographic Studies On
2-(Beta-D-Glucopyranosyl)-5-
Methyl-1,3,4-Oxadiazole,-Benzothiazole,
And-Benzimidazole, Inhibitors Of Muscle Glycogen
Phosphorylase B. Evidence For A New Binding Site.
pdb|1XL1|A Chain A, Kinetic And Crystallographic Studies On
2-(Beta-D-Glucopyranosyl)-5-
Methyl-1,3,4-Oxadiazole,-Benzothiazole,
And-Benzimidazole, Inhibitors Of Muscle Glycogen
Phosphorylase B. Evidence For A New Binding Site.
pdb|1Z62|A Chain A, Indirubin-3'-aminooxy-acetate Inhibits Glycogen
Phosphorylase By Binding At The Inhibitor And The
Allosteric Site. Broad Specificities Of The Two Sites
pdb|2F3P|A Chain A, Crystal Structure Of The Glycogen Phosphorylase B
N-(Beta-D- Glucopyranosyl)oxamic Acid Complex
pdb|2F3Q|A Chain A, Crystal Structure Of The Glycogen Phosphorylase B
METHYL-N-(Beta-D- Glucopyranosyl)oxamate Complex
pdb|2F3S|A Chain A, Crystal Structure Of The Glycogen Phosphorylase B
ETHYL-N- (Beta-D-Glucopyranosyl)oxamate Complex
pdb|2F3U|A Chain A, Crystal Structure Of The Glycogen Phosphorylase B
N-(Beta-D- Glucopyranosyl)-N'-Cyclopropyl Oxalamide
Complex
pdb|2FET|A Chain A, Synthesis Of C-D-Glycopyranosyl-Hydroquinones
And-Benzoquinones. Inhibition Of Ptp1b. Inhibition Of
And Binding To Glycogen Phosphorylase In The Crystal
pdb|2FF5|A Chain A, Synthesis Of C-D-Glycopyranosyl-Hydroquinones
And-Benzoquinones. Inhibition Of Ptp1b. Inhibition Of
And Binding To Glycogen Phosphorylase In The Crystal
pdb|1AXR|A Chain A, Cooperativity Between Hydrogen-Bonding And Charge-Dipole
Interactions In The Inhibition Of Beta-Glycosidases By
Azolopyridines: Evidence From A Study With Glycogen
Phosphorylase B
pdb|1GPY|A Chain A, Crystallographic Binding Studies On The Allosteric
Inhibitor Glucose- 6-Phosphate To T State Glycogen
Phosphorylase B
pdb|3BD7|A Chain A, Glycogen Phosphorylase Complex With 1(-D-Glucopyranosyl)
Thymine
pdb|3BD8|A Chain A, Glucogen Phosphorylase Complex With 1(-D-Glucopyranosyl)
Cytosine
pdb|3BDA|A Chain A, Glycogen Phosphorylase Complex With 1(-D-Glucopyranosyl)
Cyanuric Acid
Length = 842
Score = 29.3 bits (64), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 24/42 (57%)
Query: 379 VEMLMDPEAAKEEARKQEFKRAEERMTLKHKNSSRWAKRILK 420
V MLM + K A +E+ + +ER++ +KN W + +++
Sbjct: 762 VNMLMHHDRFKVFADYEEYVKCQERVSALYKNPREWTRMVIR 803
>pdb|7GPB|A Chain A, Structural Mechanism For Glycogen Phosphorylase Control By
Phosphorylation And Amp
pdb|7GPB|B Chain B, Structural Mechanism For Glycogen Phosphorylase Control By
Phosphorylation And Amp
pdb|7GPB|C Chain C, Structural Mechanism For Glycogen Phosphorylase Control By
Phosphorylation And Amp
pdb|7GPB|D Chain D, Structural Mechanism For Glycogen Phosphorylase Control By
Phosphorylation And Amp
pdb|9GPB|A Chain A, The Allosteric Transition Of Glycogen Phosphorylase
pdb|9GPB|B Chain B, The Allosteric Transition Of Glycogen Phosphorylase
pdb|9GPB|C Chain C, The Allosteric Transition Of Glycogen Phosphorylase
pdb|9GPB|D Chain D, The Allosteric Transition Of Glycogen Phosphorylase
pdb|1B4D|A Chain A, Amidocarbamate Inhibitor Of Glycogen Phosphorylase
pdb|1BX3|A Chain A, Effects Of Commonly Used Cryoprotectants On Glycogen
Phosphorylase Activity And Structure
pdb|2PRI|A Chain A, Binding Of 2-Deoxy-Glucose-6-Phosphate To Glycogen
Phosphorylase B
pdb|2PRJ|A Chain A, Binding Of N-Acetyl-Beta-D-Glucopyranosylamine To Glycogen
Phosphorylase B
pdb|2SKC|A Chain A, Pyridoxal Phosphorylase B In Complex With Fluorophosphate,
Glucose And Inosine-5'-Monophosphate
pdb|2SKD|A Chain A, Pyridoxal Phosphorylase B In Complex With Phosphate,
Glucose And Inosine-5'-Monophosphate
pdb|2SKE|A Chain A, Pyridoxal Phosphorylase B In Complex With Phosphite,
Glucose And Inosine-5'-monophosphate
pdb|1C8K|A Chain A, Flavopiridol Inhibits Glycogen Phosphorylase By Binding At
The Inhibitor Site
pdb|1GFZ|A Chain A, Flavopiridol Inhibits Glycogen Phosphorylase By Binding At
The Inhibitor Site
pdb|1GG8|A Chain A, Design Of Inhibitors Of Glycogen Phosphorylase: A Study Of
Alpha-And Beta-C-Glucosides And 1-Thio-Beta-D-Glucose
Compounds
pdb|1FS4|A Chain A, Structures Of Glycogen Phosphorylase-Inhibitor Complexes
And The Implications For Structure-Based Drug Design
pdb|1FTQ|A Chain A, Structures Of Glycogen Phosphorylase-Inhibitor Complexes
And The Implications For Structure-Based Drug Design
pdb|1FTW|A Chain A, Structures Of Glycogen Phosphorylase-Inhibitor Complexes
And The Implications For Structure-Based Drug Design
pdb|1FTY|A Chain A, Structures Of Glycogen Phosphorylase-Inhibitor Complexes
And The Implications For Structure-Based Drug Design
pdb|1FU4|A Chain A, Structures Of Glycogen Phosphorylase-Inhibitor Complexes
And The Implications For Structure-Based Drug Design
pdb|1FU7|A Chain A, Structures Of Glycogen Phosphorylase-Inhibitor Complexes
And The Implications For Structure-Based Drug Design
pdb|1FU8|A Chain A, Structures Of Glycogen Phosphorylase-Inhibitor Complexes
And The Implications For Structure-Based Drug Design
pdb|1GGN|A Chain A, Structures Of Glycogen Phosphorylase-Inhibitor Complexes
And The Implications For Structure-Based Drug Design
pdb|1HLF|A Chain A, Binding Of Glucopyranosylidene-Spiro-Thiohydantoin To
Glycogen Phosphorylase B: Kinetic And Crystallographic
Stud
pdb|1H5U|A Chain A, The 1.76 A Resolution Crystal Structure Of Glycogen
Phosphorylase B Complexed With Glucose And Cp320626, A
Potential Antidiabetic Drug
pdb|1K06|A Chain A, Crystallographic Binding Study Of 100 Mm
N-Benzoyl-N'-Beta-D- Glucopyranosyl Urea To Glycogen
Phosphorylase B
pdb|1K08|A Chain A, Crystallographic Binding Study Of 10 Mm
N-Benzoyl-N'-Beta-D- Glucopyranosyl Urea To Glycogen
Phosphorylase B
pdb|1KTI|A Chain A, Binding Of 100 Mm N-Acetyl-N'-Beta-D-Glucopyranosyl Urea
To Glycogen Phosphorylase B: Kinetic And
Crystallographic Studies
pdb|1P29|A Chain A, Crystal Structure Of Glycogen Phosphorylase B In Complex
With Maltopentaose
pdb|1P2B|A Chain A, Crystal Structure Of Glycogen Phosphorylase B In Complex
With Maltoheptaose
pdb|1P2D|A Chain A, Crystal Structure Of Glycogen Phosphorylase B In Complex
With Beta Cyclodextrin
pdb|1P2G|A Chain A, Crystal Structure Of Glycogen Phosphorylase B In Complex
With Gamma Cyclodextrin
pdb|1P4G|A Chain A, Crystal Structure Of Glycogen Phosphorylase B In Complex
With C-(1- Azido-Alpha-D-Glucopyranosyl)formamide
pdb|1P4H|A Chain A, Crystal Structure Of Glycogen Phosphorylase B In Complex
With C-(1- Acetamido-alpha-d-glucopyranosyl) Formamide
pdb|1P4J|A Chain A, Crystal Structure Of Glycogen Phosphorylase B In Complex
With C-(1- Hydroxy-Beta-D-Glucopyranosyl)formamide
pdb|1WUT|A Chain A, Acyl Ureas As Human Liver Glycogen Phosphorylase
Inhibitors For The Treatment Of Type 2 Diabetes
pdb|1WUY|A Chain A, Crystallographic Studies On Acyl Ureas, A New Class Of
Inhibitors Of Glycogen Phosphorylase. Broad Specificity
Of The Allosteric Site
pdb|1WV0|A Chain A, Crystallographic Studies On Acyl Ureas, A New Class Of
Inhibitors Of Glycogen Phosphorylase. Broad Specificity
Of The Allosteric Site
pdb|1WV1|A Chain A, Crystallographic Studies On Acyl Ureas, A New Class Of
Inhibitors Of Glycogenphosphorylase. Broad Specificity
Of The Allosteric Site
pdb|1WW2|A Chain A, Crystallographic Studies On Two Bioisosteric Analogues,
N-Acetyl-Beta- D-Glucopyranosylamine And
N-Trifluoroacetyl-Beta-D- Glucopyranosylamine, Potent
Inhibitors Of Muscle Glycogen Phosphorylase
pdb|1WW3|A Chain A, Crystallographic Studies On Two Bioisosteric Analogues,
N-Acetyl-Beta- D-Glucopyranosylamine And
N-Trifluoroacetyl-Beta-D- Glucopyranosylamine, Potent
Inhibitors Of Muscle Glycogen Phosphorylase
pdb|2IEG|A Chain A, Crystal Structure Of Rabbit Muscle Glycogen Phosphorylase
In Complex With 3,4-Dihydro-2-Quinolone
pdb|2IEG|B Chain B, Crystal Structure Of Rabbit Muscle Glycogen Phosphorylase
In Complex With 3,4-Dihydro-2-Quinolone
pdb|2IEI|A Chain A, Crystal Structure Of Rabbit Muscle Glycogen Phosphorylase
In Complex With 3,4-Dihydro-2-Quinolone
pdb|2IEI|B Chain B, Crystal Structure Of Rabbit Muscle Glycogen Phosphorylase
In Complex With 3,4-Dihydro-2-Quinolone
pdb|1GPB|A Chain A, Glycogen Phosphorylase B: Description Of The Protein
Structure
pdb|2GPB|A Chain A, Comparison Of The Binding Of Glucose And
Glucose-1-Phosphate Derivatives To T-State Glycogen
Phosphorylase B
pdb|3GPB|A Chain A, Comparison Of The Binding Of Glucose And
Glucose-1-Phosphate Derivatives To T-State Glycogen
Phosphorylase B
pdb|4GPB|A Chain A, Comparison Of The Binding Of Glucose And
Glucose-1-Phosphate Derivatives To T-State Glycogen
Phosphorylase B
pdb|5GPB|A Chain A, Comparison Of The Binding Of Glucose And
Glucose-1-Phosphate Derivatives To T-State Glycogen
Phosphorylase B
pdb|6GPB|A Chain A, Refined Crystal Structure Of The Phosphorylase-Heptulose
2-Phosphate- Oligosaccharide-Amp Complex
pdb|8GPB|A Chain A, Structural Mechanism For Glycogen Phosphorylase Control By
Phosphorylation And Amp
pdb|2QN7|A Chain A, Glycogen Phosphorylase B In Complex With
N-4-Hydroxybenzoyl-N'-4-Beta- D-Glucopyranosyl Urea
pdb|2QN8|A Chain A, Glycogen Phosphorylase B In Complex With
N-4-nitrobenzoyl-n'-beta-d- Glucopyranosyl Urea
pdb|2QN9|A Chain A, Glycogen Phosphorylase In Complex With
N-4-Aminobenzoyl-N'-Beta-D- Glucopyranosyl Urea
Length = 842
Score = 29.3 bits (64), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 24/42 (57%)
Query: 379 VEMLMDPEAAKEEARKQEFKRAEERMTLKHKNSSRWAKRILK 420
V MLM + K A +E+ + +ER++ +KN W + +++
Sbjct: 762 VNMLMHHDRFKVFADYEEYVKCQERVSALYKNPREWTRMVIR 803
>pdb|1Z6P|A Chain A, Glycogen Phosphorylase Amp Site Inhibitor Complex
pdb|1Z6Q|A Chain A, Glycogen Phosphorylase With Inhibitor In The Amp Site
pdb|1A8I|A Chain A, Spirohydantoin Inhibitor Of Glycogen Phosphorylase
pdb|2GPN|A Chain A, 100 K Structure Of Glycogen Phosphorylase At 2.0 Angstroms
Resolution
pdb|3E3O|A Chain A, Glycogen Phosphorylase R State-Imp Complex
pdb|3E3O|B Chain B, Glycogen Phosphorylase R State-Imp Complex
pdb|3E3O|C Chain C, Glycogen Phosphorylase R State-Imp Complex
pdb|3E3O|D Chain D, Glycogen Phosphorylase R State-Imp Complex
Length = 842
Score = 29.3 bits (64), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 24/42 (57%)
Query: 379 VEMLMDPEAAKEEARKQEFKRAEERMTLKHKNSSRWAKRILK 420
V MLM + K A +E+ + +ER++ +KN W + +++
Sbjct: 762 VNMLMHHDRFKVFADYEEYVKCQERVSALYKNPREWTRMVIR 803
>pdb|1C8L|A Chain A, Synergistic Inhibition Of Glycogen Phosphorylase A By A
Potential Antidiabetic Drug And Caffeine
pdb|1LWN|A Chain A, Crystal Structure Of Rabbit Muscle Glycogen Phosphorylase
A In Complex With A Potential Hypoglycaemic Drug At 2.0
A Resolution
pdb|1LWO|A Chain A, Crystal Structure Of Rabbit Muscle Glycogen Phosphorylase
A In Complex With A Potential Hypoglycaemic Drug At 2.0
A Resolution
pdb|3AMV|A Chain A, Allosteric Inhibition Of Glycogen Phosphorylase A By A
Potential Antidiabetic Drug
pdb|2GPA|A Chain A, Allosteric Inhibition Of Glycogen Phosphorylase A By A
Potential Antidiabetic Drug
Length = 842
Score = 29.3 bits (64), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 24/42 (57%)
Query: 379 VEMLMDPEAAKEEARKQEFKRAEERMTLKHKNSSRWAKRILK 420
V MLM + K A +E+ + +ER++ +KN W + +++
Sbjct: 762 VNMLMHHDRFKVFADYEEYVKCQERVSALYKNPREWTRMVIR 803
>pdb|2XWV|A Chain A, Siap Complex
Length = 312
Score = 29.3 bits (64), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 47 PNSLRKEIDRLNTNSLNGSDEDIGSDEARDFYEYEEPLPQEESRKNRRFDPVENYEY-EL 105
P + + L TN+++G + + + +A+ FYE ++ L N + V N Y EL
Sbjct: 167 PMAFSEVYLALQTNAVDGQENPLAAVQAQKFYEVQKFLAMTNHILNDQLYLVSNETYKEL 226
Query: 106 PE 107
PE
Sbjct: 227 PE 228
>pdb|1GPA|A Chain A, Structural Mechanism For Glycogen Phosphorylase Control By
Phosphorylation And Amp
pdb|1GPA|B Chain B, Structural Mechanism For Glycogen Phosphorylase Control By
Phosphorylation And Amp
pdb|1GPA|C Chain C, Structural Mechanism For Glycogen Phosphorylase Control By
Phosphorylation And Amp
pdb|1GPA|D Chain D, Structural Mechanism For Glycogen Phosphorylase Control By
Phosphorylation And Amp
Length = 842
Score = 29.3 bits (64), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 24/42 (57%)
Query: 379 VEMLMDPEAAKEEARKQEFKRAEERMTLKHKNSSRWAKRILK 420
V MLM + K A +E+ + +ER++ +KN W + +++
Sbjct: 762 VNMLMHHDRFKVFADYEEYVKCQERVSALYKNPREWTRMVIR 803
>pdb|2PYD|A Chain A, The Crystal Structure Of Glycogen Phosphorylase In Complex
With Glucose At 100 K
pdb|2PYI|A Chain A, Crystal Structure Of Glycogen Phosphorylase In Complex
With Glucosyl Triazoleacetamide
pdb|3L79|A Chain A, Crystal Structure Of Glycogen Phosphorylase Dk1 Complex
pdb|3L7A|A Chain A, Crystal Structure Of Glycogen Phosphorylase Dk2 Complex
pdb|3L7B|A Chain A, Crystal Structure Of Glycogen Phosphorylase Dk3 Complex
pdb|3L7C|A Chain A, Crystal Structure Of Glycogen Phosphorylase Dk4 Complex
pdb|3L7D|A Chain A, Crystal Structure Of Glycogen Phosphorylase Dk5 Complex
Length = 843
Score = 29.3 bits (64), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 24/42 (57%)
Query: 379 VEMLMDPEAAKEEARKQEFKRAEERMTLKHKNSSRWAKRILK 420
V MLM + K A +E+ + +ER++ +KN W + +++
Sbjct: 763 VNMLMHHDRFKVFADYEEYVKCQERVSALYKNPREWTRMVIR 804
>pdb|2CEX|A Chain A, Structure Of A Sialic Acid Binding Protein (Siap) In The
Presence Of The Sialic Acid Acid Analogue Neu5ac2en
pdb|2CEX|B Chain B, Structure Of A Sialic Acid Binding Protein (Siap) In The
Presence Of The Sialic Acid Acid Analogue Neu5ac2en
pdb|2CEX|C Chain C, Structure Of A Sialic Acid Binding Protein (Siap) In The
Presence Of The Sialic Acid Acid Analogue Neu5ac2en
pdb|2CEX|D Chain D, Structure Of A Sialic Acid Binding Protein (Siap) In The
Presence Of The Sialic Acid Acid Analogue Neu5ac2en
pdb|2CEY|A Chain A, Apo Structure Of Siap
Length = 306
Score = 29.3 bits (64), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 47 PNSLRKEIDRLNTNSLNGSDEDIGSDEARDFYEYEEPLPQEESRKNRRFDPVENYEY-EL 105
P + + L TN+++G + + + +A+ FYE ++ L N + V N Y EL
Sbjct: 167 PMAFSEVYLALQTNAVDGQENPLAAVQAQKFYEVQKFLAMTNHILNDQLYLVSNETYKEL 226
Query: 106 PE 107
PE
Sbjct: 227 PE 228
>pdb|2XWO|A Chain A, Siap R147e Mutant In Complex With Sialylamide
Length = 312
Score = 29.3 bits (64), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 47 PNSLRKEIDRLNTNSLNGSDEDIGSDEARDFYEYEEPLPQEESRKNRRFDPVENYEY-EL 105
P + + L TN+++G + + + +A+ FYE ++ L N + V N Y EL
Sbjct: 167 PMAFSEVYLALQTNAVDGQENPLAAVQAQKFYEVQKFLAMTNHILNDQLYLVSNETYKEL 226
Query: 106 PE 107
PE
Sbjct: 227 PE 228
>pdb|3B50|A Chain A, Structure Of H. Influenzae Sialic Acid Binding Protein
Bound To Neu5ac
Length = 310
Score = 29.3 bits (64), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 47 PNSLRKEIDRLNTNSLNGSDEDIGSDEARDFYEYEEPLPQEESRKNRRFDPVENYEY-EL 105
P + + L TN+++G + + + +A+ FYE ++ L N + V N Y EL
Sbjct: 167 PMAFSEVYLALQTNAVDGQENPLAAVQAQKFYEVQKFLAMTNHILNDQLYLVSNETYKEL 226
Query: 106 PE 107
PE
Sbjct: 227 PE 228
>pdb|2XXK|A Chain A, Siap Complex
Length = 312
Score = 29.3 bits (64), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 47 PNSLRKEIDRLNTNSLNGSDEDIGSDEARDFYEYEEPLPQEESRKNRRFDPVENYEY-EL 105
P + + L TN+++G + + + +A+ FYE ++ L N + V N Y EL
Sbjct: 167 PMAFSEVYLALQTNAVDGQENPLAAVQAQKFYEVQKFLAMTNHILNDQLYLVSNETYKEL 226
Query: 106 PE 107
PE
Sbjct: 227 PE 228
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.309 0.128 0.354
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,767,446
Number of Sequences: 62578
Number of extensions: 1020521
Number of successful extensions: 2136
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 2119
Number of HSP's gapped (non-prelim): 32
length of query: 911
length of database: 14,973,337
effective HSP length: 108
effective length of query: 803
effective length of database: 8,214,913
effective search space: 6596575139
effective search space used: 6596575139
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 56 (26.2 bits)