Query 002540
Match_columns 911
No_of_seqs 179 out of 288
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 02:03:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002540.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002540hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04615 Utp14: Utp14 protein; 100.0 4E-136 9E-141 1230.4 52.8 676 143-871 14-734 (735)
2 COG5644 Uncharacterized conser 100.0 2E-115 5E-120 964.1 37.4 661 148-871 188-868 (869)
3 KOG2172 Uncharacterized conser 100.0 1E-113 2E-118 970.6 39.2 646 30-872 8-654 (654)
4 KOG2172 Uncharacterized conser 96.5 0.00041 8.8E-09 81.8 -2.0 201 248-452 4-246 (654)
5 PF10175 MPP6: M-phase phospho 83.4 0.83 1.8E-05 43.6 2.5 22 502-523 3-24 (104)
6 KOG4531 M phase phosphoprotein 79.9 1.3 2.8E-05 44.3 2.4 29 501-529 10-38 (165)
7 KOG1832 HIV-1 Vpr-binding prot 61.2 8.9 0.00019 48.2 4.2 11 51-61 1394-1404(1516)
8 PF09026 CENP-B_dimeris: Centr 55.3 3.9 8.5E-05 38.5 0.0 19 106-124 6-24 (101)
9 PF04931 DNA_pol_phi: DNA poly 47.4 31 0.00068 43.7 6.1 6 57-62 632-637 (784)
10 PF10446 DUF2457: Protein of u 46.4 11 0.00023 44.4 1.6 7 757-763 423-429 (458)
11 PF03115 Astro_capsid: Astrovi 33.9 14 0.0003 46.7 0.0 10 148-157 707-716 (787)
12 PF04931 DNA_pol_phi: DNA poly 25.5 72 0.0016 40.6 4.3 7 147-153 730-736 (784)
13 PF05764 YL1: YL1 nuclear prot 21.4 66 0.0014 35.1 2.5 12 43-54 11-22 (240)
No 1
>PF04615 Utp14: Utp14 protein; InterPro: IPR006709 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ]. This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. This entry contains Utp14, a large ribonuclear protein associated with snoRNA U3 [].; GO: 0006364 rRNA processing, 0032040 small-subunit processome
Probab=100.00 E-value=4.2e-136 Score=1230.36 Aligned_cols=676 Identities=39% Similarity=0.571 Sum_probs=478.3
Q ss_pred CCCCchHHHHHHHhhhhCCCCccccccccccccccccCCCCCCCCCCCCCCCCCCccchhhhhccccCCcchhHHHHHHH
Q 002540 143 QDGDNDERHLRMLQGVTGMPSEFFEGKKKKKNVVISEAYPESEFNPTRDVLDGNGQISIDDLLEPLQGKSGYSKLRKRMH 222 (911)
Q Consensus 143 ~d~dd~~~h~klL~~i~~l~~~~~~~~~r~k~~~~tE~~~esEF~l~~~~~~g~~kl~l~dLl~~l~~~~~~~~lkk~l~ 222 (911)
+++||+++|.+||+.|++|.+....+. +++...+++.+.+|||+|++.+ +.++|+|+|||++|. ++.+..++++|.
T Consensus 14 ~~~~~~~~~~~L~~~i~~l~~~~~~~~-~~~~~~~~~~~~~sef~~~~~~--~~~kl~l~dLl~~l~-~~~~~~~~k~l~ 89 (735)
T PF04615_consen 14 DDEDDEEKHDKLLKAISSLDSKKRKKK-KKRRERIEESGKESEFNLSSSG--ADDKLSLSDLLSSLS-DSSLSKLKKQLK 89 (735)
T ss_pred ccccChHHHHHHHHHHHhccccccccc-cccccccccccCcccccCCccC--ccCcccHHHHHhhhc-chhHHHHHHHHH
Confidence 557789999999999999977754332 2344455566789999998642 234999999999999 889999999999
Q ss_pred HhhhccccccCCCCchHHHHHHHHHHHHHHHHhhhccHHHHHhhcCCCceeccC-CCCCCCcchhhhhccCCCCCHHHHH
Q 002540 223 QMRKKSTSVLAPLPKPEQEKLERKVVYEQSKKDITKWEPLVKMNREAPSIYFDE-DTNLGFSTVGAIAAGFEPRTEFEKK 301 (911)
Q Consensus 223 ~l~~~~~~l~~PL~k~~qeRieR~aAYe~~k~el~kW~~~Vk~NR~Ae~L~Fp~-~~~~~~~~~~~~~s~~kp~T~LE~e 301 (911)
.+.++..+|++||++++|+||+|+|||++|+++|++|.|||++||+|+||+||+ +......++..+++.|+|.|+||++
T Consensus 90 ~~~~~~~~l~~PL~~~~~~r~~R~~ay~~~k~~~~kW~~~V~~nr~a~~l~Fp~~~~~~~~~~~~~~~~~~~p~t~lE~~ 169 (735)
T PF04615_consen 90 KVSKKKKTLAAPLPKREQERIERKAAYEKTKKELDKWDPTVKRNREAEHLVFPLQKEKPEDSSVASLASKFKPRTELEKE 169 (735)
T ss_pred HhhcccCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCeeeccCCCccccccchhhhhhccCCCCHHHHH
Confidence 998877789999999999999999999999999999999999999999999998 4566678888999999999999999
Q ss_pred HHHHhhhccch-hhhhccchhhhhhccCCHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchhhHHHHhhHHHHHHHHHh
Q 002540 302 MASLVNDDKVK-EAHKQDGSKLLELNKISVEDYLEERNHVAKMRSLLFRHEMKRKRIKKIKSKTYHRLLKKDRLKAASVE 380 (911)
Q Consensus 302 i~~lL~~s~l~-~~~~~~~~e~l~~~~ms~EE~k~Rr~EL~kmRaL~fr~E~KaKRikKIKSK~YhRI~KKek~K~~~k~ 380 (911)
|++||+.++++ .......++.+++++||+||+++||+||++||+||||+|+|||||||||||+|||||||+++|+++++
T Consensus 170 i~~~L~~~~~~~~~~~~~~~e~~~~~~ms~eE~~~r~~el~~~R~L~~~~e~KakR~kKIKSK~yhri~kk~k~k~~~k~ 249 (735)
T PF04615_consen 170 IASILEESGLASDEKKLTEAEELALKKMSLEEAKERRAELAKMRALMFYEEAKAKRIKKIKSKTYHRILKKEKEKEQEKE 249 (735)
T ss_pred HHHHHHHcCCCcchhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcch
Confidence 99999999998 44555678899999999999999999999999999999999999999999999999999999988776
Q ss_pred hc----CCHHHHHHHHHHHHHHHHHHHhcccccCccHHHHHHHHhccccCCHHHHHHHHHHHHHhHHHHHHHhhcCCCCC
Q 002540 381 ML----MDPEAAKEEARKQEFKRAEERMTLKHKNSSRWAKRILKRGLDAQDEGTRAAITEQLQQHALLTRKMKSMKDSSS 456 (911)
Q Consensus 381 ~e----~dpe~a~ee~ek~E~~RA~ERmtLKHkntsKWAK~~~~~G~~~~D~e~R~ai~EQL~~~eeL~~Ki~~~~~~ss 456 (911)
|+ .||++|+++++++|++||+|||||||+|||||||+|+++|+++||.++|++|+|||++|++||+||++..++++
T Consensus 250 ~e~l~~~dpe~a~e~~e~~e~~Ra~ERmtlkHkn~sKWAK~~~~~G~~~~d~~~R~al~eql~~~~eL~~Ki~~~~~~~~ 329 (735)
T PF04615_consen 250 FEELEESDPEAAEEELEKLEKKRAEERMTLKHKNTSKWAKSMLRRGRAKYDEEARQALQEQLRRGEELTRKIEGEDSSDS 329 (735)
T ss_pred HHHHhhcChhhhHHHHHHHHHHHHHHHhhccccccCHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHhccCCCcc
Confidence 63 79999999999999999999999999999999999999999999999999999999999999999999765433
Q ss_pred CCCC-CCccccccc-----cCCCCHHHHHHHHHHHHHHHHHhhhcCCCCCcccccCcHHHHHHHHHhHHHHHHHHHHHHH
Q 002540 457 SDDS-SDEDDVDEN-----SAGSDQDRASKLYATAKEKTLKVLAEDDEVPESGVLSLPFMVRGMKKRKEEAIQEANAALQ 530 (911)
Q Consensus 457 Sded-~de~e~~e~-----~~~~de~~~~~l~~~ake~~l~~l~~d~e~p~~GL~~MkFMqrA~~~~kee~~ee~~~~lr 530 (911)
++++ +++++++.+ .++.++|+....... +.. .......+|||+|+||++|++++++++.+++..+++
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~--~~~~~~~~gl~~mkFMk~a~erk~ee~~~e~~~l~~ 402 (735)
T PF04615_consen 330 DEDEESDEEEEDEDDDEDDDDDDNPWMLRKKLEK-----LKE--EEEDEEKKGLMSMKFMKRAEERKKEENDEEAEELRR 402 (735)
T ss_pred ccccccccccchhhhccccccccCHHHHHHhhhh-----hhh--cccchhhhhccchHHHHhhHHhHHHHHHHHHHHHHH
Confidence 3221 111111111 122344433222211 111 112223789999999999999999999999999999
Q ss_pred HHHHhhhhhcCCCCcc-cccccccccccccCcccccccCCcccccccccCCCCCCCcchHHhhhcccCCCC-Cccccccc
Q 002540 531 EYESSLKKLEGTGGEE-NLKEGAASGRRVFGPVKREVLVPSKKIETDNYYGNSDSEGDLEAEANMDAGNGT-NNDVQKNV 608 (911)
Q Consensus 531 ele~~l~~~e~~~~~e-~~~~~~~~GRr~f~~~~~~~~~~~~k~~~~~~~~~sd~e~~~~~~~~~~~e~~~-~~~~~~~~ 608 (911)
+|+..-. ...+. ........||++|+++........... ...... ........+......... ..+ ....
T Consensus 403 Ele~~~~----~~~e~~~~~~~~~~gR~~~~~~~~~~~~~s~~~-~~~~~~--~~k~e~~sd~~~~~~~~~~~~~-~~~~ 474 (735)
T PF04615_consen 403 ELEEEES----EDEEEEEENEEKNVGRRKFGPGSSEKAKESKKD-SKENKS--ESKEEKSSDEEEDKENKMEDKV-EKEE 474 (735)
T ss_pred HHhhhhh----cccccccccccccccccccccccccccccccch-hhhhhh--hhhhcccccccccccccccccc-cccc
Confidence 9986211 11111 123456789999998541111000000 000000 000000000000000000 000 0000
Q ss_pred c-cccccccccCCCCCCccccccccccCCCCCCCcccccccccCchhhhcccC----------------------Ccccc
Q 002540 609 K-TDSFTLHVDHESHPDSVFKSFEDVVRDPGPKTSYDVAIFASGTWKKQMKSG----------------------NDVDA 665 (911)
Q Consensus 609 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~v~~~~~~~~~~~~k~~----------------------~~~~~ 665 (911)
. ...... .... ...........++|+...... ..+..
T Consensus 475 ~~~~~~k~---------~~~~-----------~~~~~~~~~~eNpwl~~~~k~~k~~~~~~~k~~~~~~~~~~~~~~~~~ 534 (735)
T PF04615_consen 475 NKKKKKKS---------ESAE-----------DEEEKEEDDKENPWLKEESKKSKSKKKKKKKKKEISSEVNKSSNKISK 534 (735)
T ss_pred cccccccc---------cccc-----------cccccccccccchhhhcccccccccccccccccccccccccccccccc
Confidence 0 000000 0000 000000011233333210000 00000
Q ss_pred cccc--ccccc------cccccccCcccccccccccccccccccccccccccCCccCCCCccHHHHHHHhcCCCchHHHH
Q 002540 666 NNEK--SMKVV------EPALNDQGLEETAREVDEESETDSEGQMVDGILSSAPKASYKLPSQEELIRLAFAGDDVEEDF 737 (911)
Q Consensus 666 ~~~k--~~k~~------~~v~~~~~~~~~~~~~~~~sd~d~e~~~vd~~l~s~~k~~~~~~~Q~eLIkeAFAgDDVv~eF 737 (911)
.... ..+.. ..+.+..............++++++.. ...++.|++||++||||||||++|
T Consensus 535 ~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~------------~~~~~~q~~li~~AFA~DdV~~eF 602 (735)
T PF04615_consen 535 SQAKVKKKKKKEKSKDESNILIDEENEVQIKSVDTDEDDEDDEE------------DPFAFEQRELIREAFAGDDVVAEF 602 (735)
T ss_pred cccccccccccccccccccccccccchhcccccccccccccchh------------hhhhHHHHHHHHHHhcCCchHHHH
Confidence 0000 00000 000000000000000000001111110 011369999999999999999999
Q ss_pred HHHHHHHhhhcCCCCCCCCCCCccccccccccccCCCCcchhhHHHHHHhHHHHhhcccccCCCceEEcccccccccccc
Q 002540 738 EEDKEKVLNEENPVPEKPNLIPGWGQWTDVQRKKGVPSWMLDEHENAKKMREEALKKRKDAHLKHVIISEKLDKKAEKLH 817 (911)
Q Consensus 738 ~kEK~~~ie~e~pk~e~D~tLPGWGsW~G~~~Kk~~ps~~~~~~e~~KKkr~~~~kkRKDa~L~~VIInEKrdkK~~Kyq 817 (911)
++||.++++++.|+ ++|+||||||+|||.|.+++.++|+.+++. .+|..+..+++|+|++|+||||||++|+|++|||
T Consensus 603 ~~eK~~~~e~e~pk-~~~~~LPGWG~W~G~g~~~~~~~~~~~~~~-~~k~~~~~~~~RkD~~l~~VIInEk~~kk~~k~~ 680 (735)
T PF04615_consen 603 EKEKEEEIEEEKPK-EIDLTLPGWGSWAGPGIKKSKKKRKKKKRF-VKKIPGVKKKKRKDAKLKHVIINEKRDKKAAKYQ 680 (735)
T ss_pred HHHHHHHHhhhCCc-ccccCCCCcccccCCCcCccchhhhhhhhh-hhccccccccCCcccccCCeeecCcccchhhhhc
Confidence 99999999999997 589999999999999877665443332222 2333344567999999999999999999999999
Q ss_pred cCCCCCCCCCHHHHHHHhcCCCCCCCChHHHHhhhccCceeccCCccccCCCcc
Q 002540 818 TKTLPYPFTSKEVFEQSIRVPVGPEFNPATAVGALTRPDVKKKSGIIIKPIKFE 871 (911)
Q Consensus 818 v~~LPfPFts~eQyErSlR~PIG~EWNT~~afqkLt~PrVvtK~G~II~Pi~~e 871 (911)
|++|||||+|++|||+|||+||||||||.++||+||+|+|+||+|+||.||+++
T Consensus 681 ~~~lP~pf~~~~qyE~slr~PiG~ewnt~~~~~~l~~P~V~~k~G~iI~P~~~p 734 (735)
T PF04615_consen 681 VSELPFPFTSKEQYERSLRQPIGPEWNTETAHQKLTKPRVVTKAGTIIEPMKKP 734 (735)
T ss_pred cccCCCCCCCHHHHHHHhcCCCCCCcChHHHHHHhhCCeeeccCCceeCCCCCC
Confidence 999999999999999999999999999999999999999999999999999875
No 2
>COG5644 Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=2.1e-115 Score=964.15 Aligned_cols=661 Identities=29% Similarity=0.445 Sum_probs=443.7
Q ss_pred hHHHHHHHhhhhCCCCcccccccccccccccc---CCCCCCCCCCCCC-CCC-CCccchhhhhccccCCcchhHHHHHHH
Q 002540 148 DERHLRMLQGVTGMPSEFFEGKKKKKNVVISE---AYPESEFNPTRDV-LDG-NGQISIDDLLEPLQGKSGYSKLRKRMH 222 (911)
Q Consensus 148 ~~~h~klL~~i~~l~~~~~~~~~r~k~~~~tE---~~~esEF~l~~~~-~~g-~~kl~l~dLl~~l~~~~~~~~lkk~l~ 222 (911)
+.+..-+|..|+++.....+. +.+.++. .+.+.+|.++... .+| +++|+|.|||..|.. .+|+-.|+
T Consensus 188 d~~~d~~~n~i~s~~~de~~a----~s~~~~d~~~s~e~~~y~~~~~n~~sgss~~i~itdll~~i~~----~q~~~~~~ 259 (869)
T COG5644 188 DSKLDNLRNYIVSLKKDEADA----ESVLSSDDNDSIEEIKYDPHETNKESGSSETIDITDLLDSIPM----EQLKVSLK 259 (869)
T ss_pred hhHHHHHHHHHHHHhhhhhcc----ccccccccCCchhhhccCCcccccccCCccceeHHHhhhccCH----HHHHHhhh
Confidence 455667888899985443222 2233332 2357899988643 223 349999999999976 88999999
Q ss_pred HhhhccccccCCCCchHHHHHHHHHHHHHHHHhhhccHHHHHhhcCCCceeccCCCCCCCcchh-hhhccCCCCCHHHHH
Q 002540 223 QMRKKSTSVLAPLPKPEQEKLERKVVYEQSKKDITKWEPLVKMNREAPSIYFDEDTNLGFSTVG-AIAAGFEPRTEFEKK 301 (911)
Q Consensus 223 ~l~~~~~~l~~PL~k~~qeRieR~aAYe~~k~el~kW~~~Vk~NR~Ae~L~Fp~~~~~~~~~~~-~~~s~~kp~T~LE~e 301 (911)
.|.+++.+|.+||++++|+|++|+|||++++.+|.||.|||+.||+++||+||++.+..+++.. -+++.|.|+|++|.+
T Consensus 260 ~l~~~ss~~d~pl~k~iq~r~erqaaye~tk~d~~kw~~iv~~nrksd~lifpmn~~~~~~~s~~~~~s~~~p~te~e~k 339 (869)
T COG5644 260 PLVSESSKLDAPLAKSIQDRLERQAAYEQTKNDLEKWKPIVADNRKSDQLIFPMNETARPVPSNNGLASSFEPRTESERK 339 (869)
T ss_pred hhccccccccCcchHHHHHHHHHHHHHHHhHHHHHhhchHhhhccccceeeecCCCCCCCCccccccccccCcchHHHHH
Confidence 9999899999999999999999999999999999999999999999999999987766554444 579999999999999
Q ss_pred HHHHhhhccchhhhhccchhhhhhccCCHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchhhHHHHhhHHHHHHHH-Hh
Q 002540 302 MASLVNDDKVKEAHKQDGSKLLELNKISVEDYLEERNHVAKMRSLLFRHEMKRKRIKKIKSKTYHRLLKKDRLKAAS-VE 380 (911)
Q Consensus 302 i~~lL~~s~l~~~~~~~~~e~l~~~~ms~EE~k~Rr~EL~kmRaL~fr~E~KaKRikKIKSK~YhRI~KKek~K~~~-k~ 380 (911)
|.++|..+||....+...+++|++++||+||+.+|+.+||.||+||||+|+||||++||||||||+|+|++++|+.. .-
T Consensus 340 ~~q~l~da~l~n~~~~~k~eela~~kls~ee~~~rt~qlr~mrelmfreerkakr~~kiksktyrkirk~~~~k~~~l~~ 419 (869)
T COG5644 340 MHQALLDAGLENESALKKQEELALNKLSVEEVAERTRQLRFMRELMFREERKAKRVAKIKSKTYRKIRKNRKEKEMALIP 419 (869)
T ss_pred HHHHHHhcccCChhhhhHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHhhhhhccc
Confidence 99999999998876666789999999999999999999999999999999999999999999999999999888642 11
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHHhcccccCccHHHHHHHHhccccCCHHHHHHHHHHHHHhHHHHHHHhhcCCCCCCCCC
Q 002540 381 MLMDPEAAKEEARKQEFKRAEERMTLKHKNSSRWAKRILKRGLDAQDEGTRAAITEQLQQHALLTRKMKSMKDSSSSDDS 460 (911)
Q Consensus 381 ~e~dpe~a~ee~ek~E~~RA~ERmtLKHkntsKWAK~~~~~G~~~~D~e~R~ai~EQL~~~eeL~~Ki~~~~~~ssSded 460 (911)
.-.|. +-++.+.+||.|||||||+|||+|+|.|+.+. .++.+||.+|.||||+|.+|++||.+..-. |++
T Consensus 420 ~s~d~-----ene~~e~ara~ermt~rhk~~s~w~r~ml~~~--s~~~~tre~~~e~irkgd~l~~ri~~k~~~---d~e 489 (869)
T COG5644 420 KSEDL-----ENEKSEEARALERMTQRHKNTSSWTRKMLERA--SHGEGTREAVNEQIRKGDELMQRIHGKEIM---DGE 489 (869)
T ss_pred ccccc-----ccchhHHHHHHHHHHHhhccchHHHHHHHHHh--ccCchhHHHHHHHHHhHHHHHHHHhccccc---ccc
Confidence 11222 24689999999999999999999999999983 679999999999999999999999985421 111
Q ss_pred CCccccccccCCCCHHHHHHHHHHHHHHHHHhhhcCCCCCcccccCcHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhc
Q 002540 461 SDEDDVDENSAGSDQDRASKLYATAKEKTLKVLAEDDEVPESGVLSLPFMVRGMKKRKEEAIQEANAALQEYESSLKKLE 540 (911)
Q Consensus 461 ~de~e~~e~~~~~de~~~~~l~~~ake~~l~~l~~d~e~p~~GL~~MkFMqrA~~~~kee~~ee~~~~lrele~~l~~~e 540 (911)
|..+-+ .+|.+ .......+.++|-. +...+|||+|+||++|..++.+++..- ++ .|..++
T Consensus 490 ----d~~~~s-~sd~d-~~eq~~~~~e~ir~------~~~~~gvl~m~fmr~~~~rq~~a~k~s----~~----~L~~ve 549 (869)
T COG5644 490 ----DVSEFS-DSDYD-TNEQVSTAFEKIRN------EEELKGVLGMKFMRDASNRQMAASKIS----VA----DLVKVE 549 (869)
T ss_pred ----cccccc-ccccc-chhhhhhHHHHHhh------hhhhcccchhHHhhccHHHHHHHHHhH----HH----HHhcCC
Confidence 110111 11111 01111223343322 234889999999999999997765442 23 333444
Q ss_pred CCCC------cc--cccccccccccccCcccccccCCcccccccccCCCCCCCcchHHhhhcccCCCCCcc--ccccccc
Q 002540 541 GTGG------EE--NLKEGAASGRRVFGPVKREVLVPSKKIETDNYYGNSDSEGDLEAEANMDAGNGTNND--VQKNVKT 610 (911)
Q Consensus 541 ~~~~------~e--~~~~~~~~GRr~f~~~~~~~~~~~~k~~~~~~~~~sd~e~~~~~~~~~~~e~~~~~~--~~~~~~~ 610 (911)
+++. .+ ......+.|||.|.|+..+............+.. .+..|+...... .+....-
T Consensus 550 ngDdi~~~e~de~~g~~I~~n~gRr~~~p~~e~~~kl~~~~Rke~fVt-----------~s~sLe~~~~~~~~GQkk~ae 618 (869)
T COG5644 550 NGDDIDVGELDEVGGDAIYANAGRREVFPVVEQRRKLAPRKRKEDFVT-----------PSTSLEKSMDRILHGQKKRAE 618 (869)
T ss_pred CCCcccccccCCCcchhhhccccceeecccHHHHHhcCccccccccCC-----------chHHHHhhhHHhhccccccCc
Confidence 3321 01 1123456899999997543211110000111111 111121111000 0000000
Q ss_pred ccccccccCCCCCCccccccccccCCCCCCCcccccccccCchhhhcccCCcc-ccccccccccccc-cccccCcccccc
Q 002540 611 DSFTLHVDHESHPDSVFKSFEDVVRDPGPKTSYDVAIFASGTWKKQMKSGNDV-DANNEKSMKVVEP-ALNDQGLEETAR 688 (911)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~v~~~~~~~~~~~~k~~~~~-~~~~~k~~k~~~~-v~~~~~~~~~~~ 688 (911)
+++.. +. +....+.+++|...+...+.. +...+.+......+..++. +..+....-+..+ +.. +...-..
T Consensus 619 gavv~----E~-p~e~~~~~npwl~~~~~r~~~-iKk~~~~~~~~dk~~~k~~~~~~~t~~~~l~~~kkr~--g~v~d~~ 690 (869)
T COG5644 619 GAVVF----EK-PLEATENFNPWLDRKMRRIKR-IKKKAYRRIRRDKRLKKKMPEEENTQENHLGSEKKRH--GGVPDIL 690 (869)
T ss_pred cceee----cC-chhhhhccChhhcchHHHHHH-HHHHhhhhhhhhhhhhhhhhhHHHHHHHHhcCccccC--CCCchHH
Confidence 01000 00 111122334443322111100 0000000000000000000 0000000000000 000 0000000
Q ss_pred cccccccccccccccccccccCCccCCCCccHHHHHHHhcCCCchHHHHHHHHHHHhhhcCCCCCCCCCCCccccccccc
Q 002540 689 EVDEESETDSEGQMVDGILSSAPKASYKLPSQEELIRLAFAGDDVEEDFEEDKEKVLNEENPVPEKPNLIPGWGQWTDVQ 768 (911)
Q Consensus 689 ~~~~~sd~d~e~~~vd~~l~s~~k~~~~~~~Q~eLIkeAFAgDDVv~eF~kEK~~~ie~e~pk~e~D~tLPGWGsW~G~~ 768 (911)
..+-..+++....++...+.+.-...+.++.|++||+.||||||||++|++||++++..++|++ +|++|||||+|+|+|
T Consensus 691 ~~e~~~ed~~~~~I~~p~g~~~~e~g~~i~~Q~elVa~AFagDdvvaEFeeeK~~iV~~eapKe-eD~~LPGWGeWaG~G 769 (869)
T COG5644 691 LKEIEVEDDEKTPILSPGGDEEVEEGLSIKTQEELVALAFAGDDVVAEFEEEKREIVNREAPKE-EDVVLPGWGEWAGPG 769 (869)
T ss_pred HHhhhcccccCCccccCCCCccccccchhhhHHHHHHHHhcCchHHHHHHHHHHHHhcccCccc-ccccCCCcccccCCC
Confidence 0011112222223333333322223366789999999999999999999999999999999985 899999999999996
Q ss_pred cccCCCCcchhhHHHHHHhHHHH-hhcccccCCCceEEcccccccccccccCCCCCCCCCHHHHHHHhcCCCCCCCChHH
Q 002540 769 RKKGVPSWMLDEHENAKKMREEA-LKKRKDAHLKHVIISEKLDKKAEKLHTKTLPYPFTSKEVFEQSIRVPVGPEFNPAT 847 (911)
Q Consensus 769 ~Kk~~ps~~~~~~e~~KKkr~~~-~kkRKDa~L~~VIInEKrdkK~~Kyqv~~LPfPFts~eQyErSlR~PIG~EWNT~~ 847 (911)
.|... ++...+||..+.. ..+|||.+|.||||||++|+|+.|||+..|||||+|++||||||++|||+||||+.
T Consensus 770 ~k~~~-----kk~~~VKkV~g~i~~skRkD~nl~hVIINEkvnKk~~K~~a~~vPFpfetreQYersLn~pig~EwtTra 844 (869)
T COG5644 770 LKVIK-----KKSNTVKKVVGGIKYSKRKDFNLSHVIINEKVNKKDKKFLADEVPFPFETREQYERSLNAPIGREWTTRA 844 (869)
T ss_pred cchhc-----ccchHHHHHhcccCcccccccccceeeeccccchhhhhhccccCCCCCccHHHHHHHhcCCccchhhHHH
Confidence 55221 1112234433433 56999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhccCceeccCCccccCCCcc
Q 002540 848 AVGALTRPDVKKKSGIIIKPIKFE 871 (911)
Q Consensus 848 afqkLt~PrVvtK~G~II~Pi~~e 871 (911)
+|++|++|||+||+|.||.||++.
T Consensus 845 sh~~lV~pR~~tk~G~vi~p~kap 868 (869)
T COG5644 845 SHKRLVRPRTRTKNGEVIEPFKAP 868 (869)
T ss_pred HHHHhhcceeeccCccccCcccCC
Confidence 999999999999999999999875
No 3
>KOG2172 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=1.1e-113 Score=970.57 Aligned_cols=646 Identities=44% Similarity=0.636 Sum_probs=495.3
Q ss_pred cccCCCCcccccCCCCCChhHHHHHhhhcCCCCCCCCCCCCCccccccccccCCCchHHhhhhcCCCccccccccCCCCC
Q 002540 30 KKLDGGGEKKKRKGPRLPNSLRKEIDRLNTNSLNGSDEDIGSDEARDFYEYEEPLPQEESRKNRRFDPVENYEYELPEKF 109 (911)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~y~~ee~~~~~e~~~~~r~d~~~~~e~~~~~~~ 109 (911)
-.+++..-.++..|||+|++|+++|++ ..++..+|+..+..+++|+|++++|++++..|.|||.
T Consensus 8 s~~~ls~~dk~~l~~~~p~sI~k~~~n----e~~~~~~dde~~l~~l~~~~d~~~peeqS~gNn~~~~------------ 71 (654)
T KOG2172|consen 8 SSKVLSKWDKRILNNHLPESILKTIEN----EKSPLNSDDEHDLSHLLYEWDEDVPEEQSIGNNDHER------------ 71 (654)
T ss_pred chhhccccchhhhCccCchHHhhhhhc----ccccCCcchhhhhhhhhhccccCChhHhhhcCcchhh------------
Confidence 334444455667799999999999987 4445555544444779999999999999999999998
Q ss_pred ccCCCCCCCCCCCchhhcccCCCCcccCCCCCcCCCCchHHHHHHHhhhhCCCCccccccccccccccccCCCCCCCCCC
Q 002540 110 EDENVLSDDEDDNNDIENNCGRRGISKQVGDEFQDGDNDERHLRMLQGVTGMPSEFFEGKKKKKNVVISEAYPESEFNPT 189 (911)
Q Consensus 110 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~dd~~~h~klL~~i~~l~~~~~~~~~r~k~~~~tE~~~esEF~l~ 189 (911)
+|+|+.+++|++ +|.+|+..|.++|..++.|+.+.+.+.++ ....+++|++++||.+
T Consensus 72 e~~~~esedD~e---------------------ed~~De~s~~~ml~~lt~mp~a~~Q~~kk--~~~~~~~Y~e~e~N~t 128 (654)
T KOG2172|consen 72 ELENKESEDDEE---------------------EDPDDEDSHDRMLKELTKMPSALFQERKK--PVRFTDSYPESEANPT 128 (654)
T ss_pred hhhccCCCCccc---------------------cCcccchhHHHHHhhhccCcHHHHhhhcc--cchhccccCccccCcc
Confidence 346666665532 44567889999999999999998887533 4555899999999987
Q ss_pred CCCCCCCCccchhhhhccccCCcchhHHHHHHHHhhhc-cccccCCCCchHHHHHHHHHHHHHHHHhhhccHHHHHhhcC
Q 002540 190 RDVLDGNGQISIDDLLEPLQGKSGYSKLRKRMHQMRKK-STSVLAPLPKPEQEKLERKVVYEQSKKDITKWEPLVKMNRE 268 (911)
Q Consensus 190 ~~~~~g~~kl~l~dLl~~l~~~~~~~~lkk~l~~l~~~-~~~l~~PL~k~~qeRieR~aAYe~~k~el~kW~~~Vk~NR~ 268 (911)
..+..+.+-.++.+|+.+.....+...+.+.+..+.+. +.++.+||++.+|+|++|+|||+.+.++++||.++|++||.
T Consensus 129 ~~vs~~ksi~s~~~L~~p~~g~~~~~kl~~~ise~~k~~ss~~~~pl~K~~q~RmeRkaa~e~~~~~~~kw~~~vk~nr~ 208 (654)
T KOG2172|consen 129 RLVSEEKSIKSIDDLKVPDMGKWGDKKLLKEISELRKDLSSAVDAPLPKPEQERMERKAAYELVHQDFNKWVKIVKRNRE 208 (654)
T ss_pred ccccccccccccchhccccccchhhHHHHHHHHHHhhhhhhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 76545555568888888888888888888888887664 57899999999999999999999999999999999999999
Q ss_pred CCceeccCCCCCCCcchhhhhccCCCCCHHHHHHHHHhhhccchhhhhccchhhhhhccCCHHHHHHHHHHHHHHHHhhh
Q 002540 269 APSIYFDEDTNLGFSTVGAIAAGFEPRTEFEKKMASLVNDDKVKEAHKQDGSKLLELNKISVEDYLEERNHVAKMRSLLF 348 (911)
Q Consensus 269 Ae~L~Fp~~~~~~~~~~~~~~s~~kp~T~LE~ei~~lL~~s~l~~~~~~~~~e~l~~~~ms~EE~k~Rr~EL~kmRaL~f 348 (911)
|.||+||++.++++++.+++++.|.|+|+||.++.++|..++|...+++. ++|+++.+| |+...||.++++||+|||
T Consensus 209 ~~~L~f~~~~~~~~~~~~~~as~~~p~tE~eek~~q~l~d~~ll~~~~~~--~el~~n~~s-e~~~~r~~~~~~mrel~f 285 (654)
T KOG2172|consen 209 ADTLIFPQNKQVGYSTVGAIASQFQPRTESEEKMAQVLDDEELLNPHKEN--EELELNKDS-EEHAKRRSEVRKMRELMF 285 (654)
T ss_pred ccceeecccccccccccchhccccccchHHHHHHhhhhhhhhccccchhh--HHHHHhhcC-hhHhhhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988775 889999999 999999999999999999
Q ss_pred HHHHHHHHhhhhchhhHHHHhhHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhcccccCccHHHHHHHHhccccCCH
Q 002540 349 RHEMKRKRIKKIKSKTYHRLLKKDRLKAASVEMLMDPEAAKEEARKQEFKRAEERMTLKHKNSSRWAKRILKRGLDAQDE 428 (911)
Q Consensus 349 r~E~KaKRikKIKSK~YhRI~KKek~K~~~k~~e~dpe~a~ee~ek~E~~RA~ERmtLKHkntsKWAK~~~~~G~~~~D~ 428 (911)
|+++|+|||+||||||||+|.+++..+ ...+.+++.+.++.++++.+||+|||||+|+|+|+||| |.
T Consensus 286 Reerk~kr~~kikskty~ki~~~~lek---~~~~~~~~~~~e~~e~qe~ara~eRmt~~hk~~~~w~k----------~~ 352 (654)
T KOG2172|consen 286 REERKAKRIKKIKSKTYHKIKKKELEK---RPAEKEEIDLEEEAEKQEEARAEERMTLKHKNTSQWAK----------DS 352 (654)
T ss_pred hhhhhhhHHhhhhhhhhhccchhhHhh---cccccchhhHHHHhhhHHHHHHHHHhhhhccccccccc----------Cc
Confidence 999999999999999999999998877 12347899999999999999999999999999999998 66
Q ss_pred HHHHHHHHHHHHhHHHHHHHhhcCCCCCCCCCCCccccccccCCCCHHHHHHHHHHHHHHHHHhhhcCCCCCcccccCcH
Q 002540 429 GTRAAITEQLQQHALLTRKMKSMKDSSSSDDSSDEDDVDENSAGSDQDRASKLYATAKEKTLKVLAEDDEVPESGVLSLP 508 (911)
Q Consensus 429 e~R~ai~EQL~~~eeL~~Ki~~~~~~ssSded~de~e~~e~~~~~de~~~~~l~~~ake~~l~~l~~d~e~p~~GL~~Mk 508 (911)
+||.+|.+||+.+..|.+||.+...+++|++. .+.+ ..+..|.++++..+
T Consensus 353 ~tre~~~eqlr~~~~L~~km~~~~~~~~~~e~-----------~e~~-------------------~~~v~~~~~~~e~~ 402 (654)
T KOG2172|consen 353 GTREVLSEQLRIGARLKAKMNSRKSGESSDET-----------QEQP-------------------VDDVVPMKFEEELP 402 (654)
T ss_pred cHHHHHHHHHhhhHHHHHHhhccccccccccc-----------ccCc-------------------cccccccccccchH
Confidence 89999999999999999999987754333320 0000 01345777888899
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhcCCCCcccccccccccccccCcccccccCCcccccccccCCCCCCCcch
Q 002540 509 FMVRGMKKRKEEAIQEANAALQEYESSLKKLEGTGGEENLKEGAASGRRVFGPVKREVLVPSKKIETDNYYGNSDSEGDL 588 (911)
Q Consensus 509 FMqrA~~~~kee~~ee~~~~lrele~~l~~~e~~~~~e~~~~~~~~GRr~f~~~~~~~~~~~~k~~~~~~~~~sd~e~~~ 588 (911)
||+|++.++..++.+++... .++.+..+ ++.... |.+-.+. ......+++++.+++...
T Consensus 403 ~~ar~~kk~~l~A~E~~~~~---~~~~~~~~---~~~~~p-------r~~~~~~-------~~e~~~~n~~d~s~~~~~- 461 (654)
T KOG2172|consen 403 RKARAEKKKNLEAKEEARKG---TEGDEECF---GGEELP-------RVVEAPL-------ESEKTKNNFVDESDEKKN- 461 (654)
T ss_pred HHHHHHHHHHHHHHHHhhcc---cchhhhhh---ccccCC-------chhhccc-------ccccccccCCCchhhhhc-
Confidence 99999888887776654321 11100000 100000 1111100 000001111111111000
Q ss_pred HHhhhcccCCCCCcccccccccccccccccCCCCCCccccccccccCCCCCCCcccccccccCchhhhcccCCccccccc
Q 002540 589 EAEANMDAGNGTNNDVQKNVKTDSFTLHVDHESHPDSVFKSFEDVVRDPGPKTSYDVAIFASGTWKKQMKSGNDVDANNE 668 (911)
Q Consensus 589 ~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~v~~~~~~~~~~~~k~~~~~~~~~~ 668 (911)
.+. ++... .+ +. +.+.++. .
T Consensus 462 ------~~~-~~~~~----------~l------------k~---------------~~~~~~p----------------s 481 (654)
T KOG2172|consen 462 ------DMP-GVHDI----------QL------------KA---------------VETTASP----------------S 481 (654)
T ss_pred ------Ccc-cchhh----------hh------------hh---------------hhhccCc----------------c
Confidence 000 00000 00 00 0000000 0
Q ss_pred cccccccccccccCcccccccccccccccccccccccccccCCccCCCCccHHHHHHHhcCCCchHHHHHHHHHHHhhhc
Q 002540 669 KSMKVVEPALNDQGLEETAREVDEESETDSEGQMVDGILSSAPKASYKLPSQEELIRLAFAGDDVEEDFEEDKEKVLNEE 748 (911)
Q Consensus 669 k~~k~~~~v~~~~~~~~~~~~~~~~sd~d~e~~~vd~~l~s~~k~~~~~~~Q~eLIkeAFAgDDVv~eF~kEK~~~ie~e 748 (911)
+...+.+++.+..++ + +++++.+. .++|++||++||||||||++|+++|+++++.+
T Consensus 482 ~~~~~~vp~~~~~~k------~---~E~ed~ed---------------~~~Q~elI~eAFagDDVv~dFekeK~evv~~e 537 (654)
T KOG2172|consen 482 RAESLAVPISQVQEK------D---EESEDDED---------------VPKQAELIAEAFAGDDVVRDFEKEKEEVVEQE 537 (654)
T ss_pred ccccccCccchhhhh------h---hhhccchh---------------hhhHHHHHHHHhcCCcHHHHHHHHHHHHhhhc
Confidence 001111221111111 1 11111111 15899999999999999999999999999999
Q ss_pred CCCCCCCCCCCccccccccccccCCCCcchhhHHHHHHhHHHHhhcccccCCCceEEcccccccccccccCCCCCCCCCH
Q 002540 749 NPVPEKPNLIPGWGQWTDVQRKKGVPSWMLDEHENAKKMREEALKKRKDAHLKHVIISEKLDKKAEKLHTKTLPYPFTSK 828 (911)
Q Consensus 749 ~pk~e~D~tLPGWGsW~G~~~Kk~~ps~~~~~~e~~KKkr~~~~kkRKDa~L~~VIInEKrdkK~~Kyqv~~LPfPFts~ 828 (911)
+|+ ++|+||||||+|||+|.|.+.++|.+..+.... +++|||++|+||||||++|+|++|||+..||||||++
T Consensus 538 ~pk-e~d~~LpGWGeW~G~G~k~~kkkr~~~~~~~~~------~~~RKD~nl~~VIInEkvnkka~K~q~~slPFPyt~~ 610 (654)
T KOG2172|consen 538 KPK-EVDLTLPGWGEWGGVGLKPGKKKRKVFKIKAAE------KKKRKDKNLKNVIINEKVNKKAAKLQTRSLPFPYTSR 610 (654)
T ss_pred ccc-cccccCCCcccccCccccccccccceeeeeccC------CCCccccccCceeecccccchhhhcccccCCCCCccH
Confidence 998 599999999999999988888887766554432 3489999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCCCChHHHHhhhccCceeccCCccccCCCccc
Q 002540 829 EVFEQSIRVPVGPEFNPATAVGALTRPDVKKKSGIIIKPIKFEE 872 (911)
Q Consensus 829 eQyErSlR~PIG~EWNT~~afqkLt~PrVvtK~G~II~Pi~~e~ 872 (911)
+||||||||||||||||+++||+||+|+||||+|+||+||+++.
T Consensus 611 EqyE~sl~~PIG~Ewnt~~~~~~L~rPrVv~k~G~iI~Pik~~~ 654 (654)
T KOG2172|consen 611 EQYERSLRMPIGPEWNTRRIFQKLVRPRVVTKAGVIIKPIKAEE 654 (654)
T ss_pred HHHHHHhcCCcCccccHHHHHHHhcCceeeccCccccccccCCC
Confidence 99999999999999999999999999999999999999999863
No 4
>KOG2172 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.46 E-value=0.00041 Score=81.79 Aligned_cols=201 Identities=20% Similarity=0.208 Sum_probs=140.9
Q ss_pred HHHHHHHhhhccHHHHHhhcCCCceeccC-CCCCCCcc-h----hhhhccCCCCCHHHHHHHHHhhhc----cchhhh-h
Q 002540 248 VYEQSKKDITKWEPLVKMNREAPSIYFDE-DTNLGFST-V----GAIAAGFEPRTEFEKKMASLVNDD----KVKEAH-K 316 (911)
Q Consensus 248 AYe~~k~el~kW~~~Vk~NR~Ae~L~Fp~-~~~~~~~~-~----~~~~s~~kp~T~LE~ei~~lL~~s----~l~~~~-~ 316 (911)
.+..++..+++|+..+..|-...+|.|+. ......++ . ..+...|.-.++.++.|.+..+.+ ...+.. .
T Consensus 4 ~~~ss~~~ls~~dk~~l~~~~p~sI~k~~~ne~~~~~~dde~~l~~l~~~~d~~~peeqS~gNn~~~~e~~~~esedD~e 83 (654)
T KOG2172|consen 4 KFNSSSKVLSKWDKRILNNHLPESILKTIENEKSPLNSDDEHDLSHLLYEWDEDVPEEQSIGNNDHERELENKESEDDEE 83 (654)
T ss_pred ccccchhhccccchhhhCccCchHHhhhhhcccccCCcchhhhhhhhhhccccCChhHhhhcCcchhhhhhccCCCCccc
Confidence 45678899999999999999999999994 22222222 2 247789999999999999998884 222211 1
Q ss_pred ccch-------hhhhhccCCHHHHHHHHHHHHHHHHhhhHHHHHHH------HhhhhchhhHHHHhhHHH--HHHHHHh-
Q 002540 317 QDGS-------KLLELNKISVEDYLEERNHVAKMRSLLFRHEMKRK------RIKKIKSKTYHRLLKKDR--LKAASVE- 380 (911)
Q Consensus 317 ~~~~-------e~l~~~~ms~EE~k~Rr~EL~kmRaL~fr~E~KaK------RikKIKSK~YhRI~KKek--~K~~~k~- 380 (911)
++.+ .++.+..|.+....+|-. ..|.+..|.|..+. =-+.|+|.-|+..-...+ .......
T Consensus 84 ed~~De~s~~~ml~~lt~mp~a~~Q~~kk---~~~~~~~Y~e~e~N~t~~vs~~ksi~s~~~L~~p~~g~~~~~kl~~~i 160 (654)
T KOG2172|consen 84 EDPDDEDSHDRMLKELTKMPSALFQERKK---PVRFTDSYPESEANPTRLVSEEKSIKSIDDLKVPDMGKWGDKKLLKEI 160 (654)
T ss_pred cCcccchhHHHHHhhhccCcHHHHhhhcc---cchhccccCccccCccccccccccccccchhccccccchhhHHHHHHH
Confidence 1122 334567777766655544 68999999999998 778999999998765543 2222222
Q ss_pred --hc-CCHHHHHHHHHHHHHHHHHHHhc--ccccCccHHHHHHHHhccccCCHHHH----------HHHHHHHHHhHHHH
Q 002540 381 --ML-MDPEAAKEEARKQEFKRAEERMT--LKHKNSSRWAKRILKRGLDAQDEGTR----------AAITEQLQQHALLT 445 (911)
Q Consensus 381 --~e-~dpe~a~ee~ek~E~~RA~ERmt--LKHkntsKWAK~~~~~G~~~~D~e~R----------~ai~EQL~~~eeL~ 445 (911)
+. ..+-.+...+.+.+.+|++.+|. |.|++.+||++.+..-+ .+++.-.+ .+|+.|++-+.+|.
T Consensus 161 se~~k~~ss~~~~pl~K~~q~RmeRkaa~e~~~~~~~kw~~~vk~nr-~~~~L~f~~~~~~~~~~~~~~as~~~p~tE~e 239 (654)
T KOG2172|consen 161 SELRKDLSSAVDAPLPKPEQERMERKAAYELVHQDFNKWVKIVKRNR-EADTLIFPQNKQVGYSTVGAIASQFQPRTESE 239 (654)
T ss_pred HHHhhhhhhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cccceeecccccccccccchhccccccchHHH
Confidence 22 34555666788888889998888 99999999999976544 23343333 34566677778888
Q ss_pred HHHhhcC
Q 002540 446 RKMKSMK 452 (911)
Q Consensus 446 ~Ki~~~~ 452 (911)
.|+.+.-
T Consensus 240 ek~~q~l 246 (654)
T KOG2172|consen 240 EKMAQVL 246 (654)
T ss_pred HHHhhhh
Confidence 8887754
No 5
>PF10175 MPP6: M-phase phosphoprotein 6; InterPro: IPR019324 This entry describes M-phase phosphoprotein 6 (MPP6), which is involved in generation of the 3' end of the 5.8S rRNA precursor [].
Probab=83.40 E-value=0.83 Score=43.57 Aligned_cols=22 Identities=32% Similarity=0.604 Sum_probs=16.6
Q ss_pred ccccCcHHHHHHHHHhHHHHHH
Q 002540 502 SGVLSLPFMVRGMKKRKEEAIQ 523 (911)
Q Consensus 502 ~GL~~MkFMqrA~~~~kee~~e 523 (911)
++|++||||||+..+...+..+
T Consensus 3 ~~ll~MKFMQR~~~~~~k~~~e 24 (104)
T PF10175_consen 3 SNLLDMKFMQRAKEKEEKEQLE 24 (104)
T ss_pred hhhhhhhHhhhhhHHHHHHHHH
Confidence 5789999999998776554433
No 6
>KOG4531 consensus M phase phosphoprotein 6 [Cell cycle control, cell division, chromosome partitioning]
Probab=79.90 E-value=1.3 Score=44.35 Aligned_cols=29 Identities=24% Similarity=0.308 Sum_probs=20.9
Q ss_pred cccccCcHHHHHHHHHhHHHHHHHHHHHH
Q 002540 501 ESGVLSLPFMVRGMKKRKEEAIQEANAAL 529 (911)
Q Consensus 501 ~~GL~~MkFMqrA~~~~kee~~ee~~~~l 529 (911)
.+||+.|+||||..-+..+.+.++..++|
T Consensus 10 S~~lLdMKFMqr~~~k~~Kk~~~e~~~~i 38 (165)
T KOG4531|consen 10 SSSLLDMKFMQRIETKAAKKKEAELDQLI 38 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36899999999987776666555554444
No 7
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=61.18 E-value=8.9 Score=48.21 Aligned_cols=11 Identities=27% Similarity=0.238 Sum_probs=6.7
Q ss_pred HHHHhhhcCCC
Q 002540 51 RKEIDRLNTNS 61 (911)
Q Consensus 51 ~~~~~~~~~~~ 61 (911)
.=||+++-|+.
T Consensus 1394 ~yEIGR~r~~~ 1404 (1516)
T KOG1832|consen 1394 MYEIGRRRPTD 1404 (1516)
T ss_pred hhhhcccCCCc
Confidence 35777766653
No 8
>PF09026 CENP-B_dimeris: Centromere protein B dimerisation domain; InterPro: IPR015115 Centromere protein B (CENP-B) interacts with centromeric heterochromatin in chromosomes and binds to a specific subset of alphoid satellite DNA, called the CENP-B box. CENP-B may organise arrays of centromere satellite DNA into a higher order structure, which then directs centromere formation and kinetochore assembly in mammalian chromosomes. The CENP-B dimerisation domain is composed of two alpha-helices, which are folded into an antiparallel configuration. Dimerisation of CENP-B is mediated by this domain, in which monomers dimerise to form a symmetrical, antiparallel, four-helix bundle structure with a large hydrophobic patch in which 23 residues of one monomer form van der Waals contacts with the other monomer. This CENP-B dimer configuration may be suitable for capturing two distant CENP-B boxes during centromeric heterochromatin formation []. ; GO: 0003677 DNA binding, 0003682 chromatin binding, 0006355 regulation of transcription, DNA-dependent, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 1UFI_A.
Probab=55.28 E-value=3.9 Score=38.46 Aligned_cols=19 Identities=32% Similarity=0.438 Sum_probs=0.0
Q ss_pred CCCCccCCCCCCCCCCCch
Q 002540 106 PEKFEDENVLSDDEDDNND 124 (911)
Q Consensus 106 ~~~~~d~~~~~~~~~~~~~ 124 (911)
....+|+|-+||++++++|
T Consensus 6 ~eg~~dse~dsdEdeeeed 24 (101)
T PF09026_consen 6 LEGEEDSESDSDEDEEEED 24 (101)
T ss_dssp -------------------
T ss_pred cccCcccccccccchhhhh
Confidence 3455677777766655444
No 9
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=47.44 E-value=31 Score=43.70 Aligned_cols=6 Identities=17% Similarity=0.268 Sum_probs=2.9
Q ss_pred hcCCCC
Q 002540 57 LNTNSL 62 (911)
Q Consensus 57 ~~~~~~ 62 (911)
|++.+.
T Consensus 632 l~~~~~ 637 (784)
T PF04931_consen 632 LDAKEN 637 (784)
T ss_pred hccCCC
Confidence 564443
No 10
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=46.38 E-value=11 Score=44.36 Aligned_cols=7 Identities=43% Similarity=0.667 Sum_probs=4.6
Q ss_pred CCCcccc
Q 002540 757 LIPGWGQ 763 (911)
Q Consensus 757 tLPGWGs 763 (911)
.+||=|.
T Consensus 423 p~PG~GA 429 (458)
T PF10446_consen 423 PAPGKGA 429 (458)
T ss_pred CCCCchH
Confidence 3688764
No 11
>PF03115 Astro_capsid: Astrovirus capsid protein precursor; InterPro: IPR004337 The astrovirus genome is apparently organised with nonstructural proteins encoded at the 5' end and structural proteins at the 3' end []. Proteins in this family are encoded by astrovirus ORF2, one of the three astrovirus ORFs (1a, 1b, 2). The proteins contain a viral RNA-dependent RNA polymerase motif []. The 87kDa precursor polyprotein undergoes an intracellular cleavage to form a 79kDa protein. Subsequently, extracellular trypsin cleavage yields the three proteins forming the infectious virion [].; PDB: 3QSQ_A 3TS3_D.
Probab=33.87 E-value=14 Score=46.71 Aligned_cols=10 Identities=0% Similarity=0.351 Sum_probs=0.0
Q ss_pred hHHHHHHHhh
Q 002540 148 DERHLRMLQG 157 (911)
Q Consensus 148 ~~~h~klL~~ 157 (911)
+..++-||.+
T Consensus 707 e~~R~~L~nT 716 (787)
T PF03115_consen 707 ENNRVTLFNT 716 (787)
T ss_dssp ----------
T ss_pred chhHHHHHHH
Confidence 5667777766
No 12
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=25.52 E-value=72 Score=40.57 Aligned_cols=7 Identities=29% Similarity=0.615 Sum_probs=2.9
Q ss_pred chHHHHH
Q 002540 147 NDERHLR 153 (911)
Q Consensus 147 d~~~h~k 153 (911)
||+.-.+
T Consensus 730 dDe~m~~ 736 (784)
T PF04931_consen 730 DDEQMMA 736 (784)
T ss_pred CHHHHHH
Confidence 3444443
No 13
>PF05764 YL1: YL1 nuclear protein; InterPro: IPR008895 The proteins in this family are designated YL1 []. They have been shown to be DNA-binding and may be transcription factors [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=21.42 E-value=66 Score=35.08 Aligned_cols=12 Identities=33% Similarity=0.648 Sum_probs=4.8
Q ss_pred CCCCChhHHHHH
Q 002540 43 GPRLPNSLRKEI 54 (911)
Q Consensus 43 ~~~~~~~~~~~~ 54 (911)
|=+|-.-|-.|+
T Consensus 11 Gnrm~~LL~~E~ 22 (240)
T PF05764_consen 11 GNRMKKLLEEEL 22 (240)
T ss_pred hHHHHHHHHHHH
Confidence 544433333333
Done!