Query 002540
Match_columns 911
No_of_seqs 176 out of 288
Neff 5.4
Searched_HMMs 29240
Date Tue Mar 26 17:09:43 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002540.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1257-1261//hhsearch_pdb/002540hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2yhg_A SDE_182CT, cellulose-bi 1.0 1 1 15.9 0.7 13 247-259 84-96 (437)
2 1g6e_A Antifungal protein; all 1.0 1 1 12.9 -0.8 18 748-766 58-75 (87)
3 3u65_B TP33 protein; tetratric 1.0 1 1 12.9 -0.6 14 499-512 88-103 (328)
4 2lev_A LER; transcription regu 1.0 1 1 12.0 -1.0 14 763-779 25-38 (57)
5 2r52_A BMP-6, bone morphogenet 1.0 1 1 11.6 0.3 5 760-764 55-59 (143)
6 1zkz_A Growth/differentiation 1.0 1 1 11.5 0.4 5 760-764 21-25 (110)
7 2h62_A BMP-2, BMP-2A, bone mor 1.0 1 1 11.5 0.4 5 760-764 27-31 (114)
8 3ica_A Phenylalanyl-tRNA synth 1.0 1 1 11.5 -3.7 29 820-848 25-63 (213)
9 2arp_A Inhibin beta A chain; c 1.0 1 1 11.5 0.4 5 760-764 24-28 (116)
10 3ig2_A Phenylalanyl-tRNA synth 1.0 1 1 11.3 -3.0 29 820-848 25-63 (213)
No 1
>2yhg_A SDE_182CT, cellulose-binding protein; hydrolase, glycoside hydrolase; HET: BTB; 1.08A {Saccharophagus degradans}
Probab=1.00 E-value=1 Score=15.87 Aligned_cols=13 Identities=23% Similarity=0.409 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHCC
Q ss_conf 9999988754131
Q 002540 247 VVYEQSKKDITKW 259 (911)
Q Consensus 247 aAYe~~kkel~kW 259 (911)
-+|+++-..|.+-
T Consensus 84 ~aY~~v~~nL~~h 96 (437)
T 2yhg_A 84 NAYSQAYPNLSKH 96 (437)
T ss_dssp HHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHH
T ss_conf 9999999988740
No 2
>1g6e_A Antifungal protein; all-beta, two antiparallel beta-sheets, parallel beta- sandwich; NMR {Streptomyces tendae} SCOP: b.11.1.6 PDB: 1gh5_A
Probab=1.00 E-value=1 Score=12.85 Aligned_cols=18 Identities=22% Similarity=0.730 Sum_probs=12.0
Q ss_pred CCCCCCCCCCCCCCCCCCC
Q ss_conf 3999988888886556644
Q 002540 748 ENPVPEKPNLIPGWGQWTD 766 (911)
Q Consensus 748 e~pk~e~D~tLPGWGsW~G 766 (911)
..|.- ...||.-||||--
T Consensus 58 s~prl-etitl~kw~sw~p 75 (87)
T 1g6e_A 58 SDPRL-ETITLQKWGSWNP 75 (87)
T ss_dssp TTTCE-EEEEECTTEEECC
T ss_pred CCCCE-EEEEHHHHCCCCC
T ss_conf 88521-5898567268999
No 3
>3u65_B TP33 protein; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; HET: EDO; 1.40A {Treponema pallidum subsp} PDB: 4di4_B* 4di3_D*
Probab=1.00 E-value=1 Score=12.85 Aligned_cols=14 Identities=36% Similarity=0.823 Sum_probs=10.9
Q ss_pred CCC--CCCCCCHHHHH
Q ss_conf 885--55567377788
Q 002540 499 VPE--SGVLSLPFMVR 512 (911)
Q Consensus 499 ~p~--kGL~~MkFMkr 512 (911)
.|. -++++|||+=+
T Consensus 88 ~P~~~~~v~~lPflf~ 103 (328)
T 3u65_B 88 APDSGIYTLSVPFLIQ 103 (328)
T ss_dssp STTCCBGGGGSTTTSC
T ss_pred CCHHHHHHEECCEECC
T ss_conf 9744302403881069
No 4
>2lev_A LER; transcription regulator-DNA complex, arginine-minor-groove recognition; HET: DNA; NMR {Escherichia coli}
Probab=1.00 E-value=1 Score=11.95 Aligned_cols=14 Identities=36% Similarity=1.175 Sum_probs=5.5
Q ss_pred CCCCCCCCCCCCCCCHH
Q ss_conf 66445323699984035
Q 002540 763 QWTDVQRKKGVPSWMLD 779 (911)
Q Consensus 763 sW~G~~~Kk~~ps~~~~ 779 (911)
.|+|.|.. |.|+..
T Consensus 25 TWtGrGR~---P~Wi~~ 38 (57)
T 2lev_A 25 TWSGVGRQ---PRWLKE 38 (57)
T ss_dssp EECSSSCC---CHHHHH
T ss_pred EECCCCCC---CHHHHH
T ss_conf 05798988---789999
No 5
>2r52_A BMP-6, bone morphogenetic protein 6; TGF-beta ligand, chondrogenesis, cleavage on PAIR of basic residues, cytokine, developmental protein; 2.50A {Homo sapiens}
Probab=1.00 E-value=1 Score=11.55 Aligned_cols=5 Identities=60% Similarity=2.322 Sum_probs=0.0
Q ss_pred CCCCC
Q ss_conf 65566
Q 002540 760 GWGQW 764 (911)
Q Consensus 760 GWGsW 764 (911)
||+.|
T Consensus 55 GW~dW 59 (143)
T 2r52_A 55 GWQDW 59 (143)
T ss_dssp TCGGG
T ss_pred CCCEE
T ss_conf 87235
No 6
>1zkz_A Growth/differentiation factor 2; glycoprotein, growth factor, cytokine, hormone-growth factor; 2.33A {Homo sapiens}
Probab=1.00 E-value=1 Score=11.50 Aligned_cols=5 Identities=60% Similarity=2.348 Sum_probs=0.0
Q ss_pred CCCCC
Q ss_conf 65566
Q 002540 760 GWGQW 764 (911)
Q Consensus 760 GWGsW 764 (911)
||+.|
T Consensus 21 GW~~W 25 (110)
T 1zkz_A 21 GWDSW 25 (110)
T ss_dssp TCTTT
T ss_pred CCCCE
T ss_conf 89430
No 7
>2h62_A BMP-2, BMP-2A, bone morphogenetic protein 2; TGF-beta superfamily, ligand-receptor complex, hormone/growth factor complex; 1.85A {Homo sapiens} SCOP: g.17.1.2 PDB: 2goo_A* 1rew_A 3bmp_A 2qj9_B 1es7_A 2qja_A 2qjb_A 2h64_A 3bk3_A 1reu_A
Probab=1.00 E-value=1 Score=11.49 Aligned_cols=5 Identities=60% Similarity=2.415 Sum_probs=0.0
Q ss_pred CCCCC
Q ss_conf 65566
Q 002540 760 GWGQW 764 (911)
Q Consensus 760 GWGsW 764 (911)
||+.|
T Consensus 27 GW~~W 31 (114)
T 2h62_A 27 GWNDW 31 (114)
T ss_dssp TCTTT
T ss_pred CCCCC
T ss_conf 88330
No 8
>3ica_A Phenylalanyl-tRNA synthetase beta chain; APC61692.1, phenylalanyl-tRNA SYNT beta subunit, structural genomics, PSI-2; HET: TAM; 2.44A {Porphyromonas gingivalis}
Probab=1.00 E-value=1 Score=11.48 Aligned_cols=29 Identities=21% Similarity=0.282 Sum_probs=0.0
Q ss_pred CCCCCCCCHHHHHHH----------HCCCCCCCCCHHHH
Q ss_conf 899988899999998----------22998999881898
Q 002540 820 TLPYPFTSKEVFEQS----------IRVPVGPEFNPATA 848 (911)
Q Consensus 820 ~LPfPFts~eQyErS----------lR~PIG~EWNT~~a 848 (911)
.+.|+|++.+.|+.. |.+||..|.+..++
T Consensus 25 vitysf~s~~~~~~~~~~~~~~~v~l~NPls~e~~vmRt 63 (213)
T 3ica_A 25 ILNNSLTAGSYYEGLKSHPREMAVELMNPLSQELNCMRQ 63 (213)
T ss_dssp CCCCSEEEGGGGTTCSSSCGGGCCBCSSBSCSSEEEECS
T ss_pred EEECCCCCHHHHHHHCCCCCCCEEEECCCCCHHHHHHHH
T ss_conf 200667898999662266767828943986277999998
No 9
>2arp_A Inhibin beta A chain; cystine knot, disulfide rich, EGF domain, kazal domain, PROT complex, hormone-growth factor complex; HET: 1PG; 2.00A {Homo sapiens} SCOP: g.17.1.2 PDB: 1nyu_B 1nys_B 1s4y_B* 2arv_A* 2b0u_A 2p6a_A 3b4v_A*
Probab=1.00 E-value=1 Score=11.47 Aligned_cols=5 Identities=60% Similarity=2.415 Sum_probs=0.0
Q ss_pred CCCCC
Q ss_conf 65566
Q 002540 760 GWGQW 764 (911)
Q Consensus 760 GWGsW 764 (911)
||++|
T Consensus 24 GW~~W 28 (116)
T 2arp_A 24 GWNDW 28 (116)
T ss_dssp TCTTT
T ss_pred CCCCC
T ss_conf 89440
No 10
>3ig2_A Phenylalanyl-tRNA synthetase beta chain; phers, MCSG, structural genomics, midwest center for structural GE protein structure initiative; HET: MSE; 2.09A {Bacteroides fragilis}
Probab=1.00 E-value=1 Score=11.28 Aligned_cols=29 Identities=14% Similarity=0.252 Sum_probs=0.0
Q ss_pred CCCCCCCCHHHHHHH----------HCCCCCCCCCHHHH
Q ss_conf 899988899999998----------22998999881898
Q 002540 820 TLPYPFTSKEVFEQS----------IRVPVGPEFNPATA 848 (911)
Q Consensus 820 ~LPfPFts~eQyErS----------lR~PIG~EWNT~~a 848 (911)
.+.|+|++.+.|+.. |.+||..|.+..++
T Consensus 25 vitysf~~~~~~~~~~~~~~~~~v~l~NPls~e~~vmRt 63 (213)
T 3ig2_A 25 ILNNSLTRAAYYDGLESYPSKNLVMLLNPLSADLNCMRQ 63 (213)
T ss_dssp CCCCSEECGGGGTTCSSSCGGGCEEBSSGGGCSCCEECS
T ss_pred EECCCCCCHHHHHHHCCCCCCCEEEEECCCCHHHHHHHH
T ss_conf 741555798999761266767817975886366899998
Done!