Query 002540
Match_columns 911
No_of_seqs 176 out of 288
Neff 5.4
Searched_HMMs 13730
Date Tue Mar 26 17:14:51 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002540.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H1_1257-1261//hhsearch_scop/002540hhsearch_scop
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1hnra_ a.155.1.1 (A:) H1 prot 4.1 74 0.0054 6.7 -0.4 15 763-780 18-32 (47)
2 d1g6ea_ b.11.1.6 (A:) Antifung 3.7 71 0.0051 6.8 -0.8 18 748-766 58-75 (87)
3 d2glia5 g.37.1.1 (A:229-257) F 3.5 1.1E+02 0.0079 5.5 0.6 11 46-56 16-26 (29)
4 d1t1ja_ c.23.14.2 (A:) Hypothe 3.2 1.2E+02 0.0088 5.2 0.2 26 733-767 69-94 (119)
5 d1of5b_ d.17.4.2 (B:) mRNA tra 3.2 1.2E+02 0.009 5.1 0.2 12 756-767 123-134 (165)
6 d2huga1 b.34.13.2 (A:3-57) CpS 2.9 1.4E+02 0.01 4.8 0.1 15 725-739 37-51 (55)
7 d1bsma1 a.2.11.1 (A:1-86) Camb 2.2 1.9E+02 0.014 3.8 1.2 13 814-826 1-13 (86)
8 d1oh4a_ b.18.1.18 (A:) Beta-ma 2.2 1.4E+02 0.01 4.6 -0.6 11 754-764 48-58 (174)
9 d2h62a1 g.17.1.2 (A:12-114) Bo 2.2 1.9E+02 0.014 3.7 0.4 5 760-764 16-20 (103)
10 d1mula_ a.55.1.1 (A:) HU prote 2.2 1.9E+02 0.014 3.7 1.7 27 733-764 24-50 (90)
No 1
>d1hnra_ a.155.1.1 (A:) H1 protein (H-NS) {Escherichia coli [TaxId: 562]}
Probab=4.12 E-value=74 Score=6.68 Aligned_cols=15 Identities=27% Similarity=0.581 Sum_probs=7.4
Q ss_pred CCCCCCCCCCCCCCCHHH
Q ss_conf 664453236999840355
Q 002540 763 QWTDVQRKKGVPSWMLDE 780 (911)
Q Consensus 763 sW~G~~~Kk~~ps~~~~~ 780 (911)
.|+|.|.+ |.||...
T Consensus 18 tWTGrGR~---P~w~~~~ 32 (47)
T d1hnra_ 18 TWTGQGRT---PAVIKKA 32 (47)
T ss_dssp ECCTTSSC---CSHHHHH
T ss_pred EEECCCCC---CHHHHHH
T ss_conf 43468968---7899999
No 2
>d1g6ea_ b.11.1.6 (A:) Antifungal protein AFP1 {Streptomyces tendae, tu901 [TaxId: 1932]}
Probab=3.72 E-value=71 Score=6.83 Aligned_cols=18 Identities=22% Similarity=0.730 Sum_probs=12.0
Q ss_pred CCCCCCCCCCCCCCCCCCC
Q ss_conf 3999988888886556644
Q 002540 748 ENPVPEKPNLIPGWGQWTD 766 (911)
Q Consensus 748 e~pk~e~D~tLPGWGsW~G 766 (911)
..|.- ...||.-||||--
T Consensus 58 s~prl-etitl~kw~sw~p 75 (87)
T d1g6ea_ 58 SDPRL-ETITLQKWGSWNP 75 (87)
T ss_dssp TTTCE-EEEEECTTEEECC
T ss_pred CCCCE-EEEEHHHHCCCCC
T ss_conf 88521-5898567268999
No 3
>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.54 E-value=1.1e+02 Score=5.53 Aligned_cols=11 Identities=45% Similarity=0.679 Sum_probs=7.0
Q ss_pred CCHHHHHHHHH
Q ss_conf 97357999732
Q 002540 46 LPNSLRKEIDR 56 (911)
Q Consensus 46 ~~~~~~~~~~~ 56 (911)
-||||||++-.
T Consensus 16 dPSSLRKH~k~ 26 (29)
T d2glia5 16 DPSSLRKHVKT 26 (29)
T ss_dssp SHHHHHHHHHH
T ss_pred CHHHHHHHHHH
T ss_conf 88999998785
No 4
>d1t1ja_ c.23.14.2 (A:) Hypothetical protein PA1492 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=3.23 E-value=1.2e+02 Score=5.18 Aligned_cols=26 Identities=19% Similarity=0.387 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 58878999999861039999888888865566445
Q 002540 733 VEEDFEEDKEKVLNEENPVPEKPNLIPGWGQWTDV 767 (911)
Q Consensus 733 Vv~eF~kEK~~~ieee~pk~e~D~tLPGWGsW~G~ 767 (911)
|-+.|.+- .+ .-+-++||||-.=+|+
T Consensus 69 vd~~fm~~----~e-----eLIvL~LpGWe~S~Gi 94 (119)
T d1t1ja_ 69 VDAFYMDH----LE-----ELIVLDLPGWRDSAGI 94 (119)
T ss_dssp HHHHHHHH----CS-----EEEECCCTTGGGCHHH
T ss_pred HHHHHHHH----HH-----HCEEEECCCCCCCCCH
T ss_conf 25999998----32-----0037756884333038
No 5
>d1of5b_ d.17.4.2 (B:) mRNA transport regulator MTR2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=3.16 E-value=1.2e+02 Score=5.10 Aligned_cols=12 Identities=25% Similarity=0.695 Sum_probs=9.6
Q ss_pred CCCCCCCCCCCC
Q ss_conf 888865566445
Q 002540 756 NLIPGWGQWTDV 767 (911)
Q Consensus 756 ~tLPGWGsW~G~ 767 (911)
.+-|=||+|-|+
T Consensus 123 ~~rp~wg~~fg~ 134 (165)
T d1of5b_ 123 KPRPLWGPYFGI 134 (165)
T ss_dssp -----CCCCEEE
T ss_pred CCCCCCCCCCCE
T ss_conf 688533134350
No 6
>d2huga1 b.34.13.2 (A:3-57) CpSRP43 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=2.91 E-value=1.4e+02 Score=4.80 Aligned_cols=15 Identities=27% Similarity=0.601 Sum_probs=10.5
Q ss_pred HHHCCCCCHHHHHHH
Q ss_conf 996089945887899
Q 002540 725 RLAFAGDDVEEDFEE 739 (911)
Q Consensus 725 keAFAgDDVv~eF~k 739 (911)
..+|..+|||.||+.
T Consensus 37 ~a~~Ia~Dvv~dfEa 51 (55)
T d2huga1 37 KGVHVAEDVAKDYED 51 (55)
T ss_dssp CTTBCCHHHHHTTHH
T ss_pred CHHHHHHHHHHHHHC
T ss_conf 278778999999982
No 7
>d1bsma1 a.2.11.1 (A:1-86) Cambialistic superoxide dismutase {Propionibacterium shermanii [TaxId: 1752]}
Probab=2.23 E-value=1.9e+02 Score=3.81 Aligned_cols=13 Identities=23% Similarity=0.547 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCC
Q ss_conf 0013488999888
Q 002540 814 EKLHTKTLPYPFT 826 (911)
Q Consensus 814 aKyqv~~LPfPFt 826 (911)
+.|.+..|||+|.
T Consensus 1 ~~f~Lp~LPY~~d 13 (86)
T d1bsma1 1 AVYTLPELPYDYS 13 (86)
T ss_dssp CCSCCCCCSSCTT
T ss_pred CCCCCCCCCCCCC
T ss_conf 9365899999845
No 8
>d1oh4a_ b.18.1.18 (A:) Beta-mannosidase, C-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=2.20 E-value=1.4e+02 Score=4.65 Aligned_cols=11 Identities=27% Similarity=0.658 Sum_probs=0.0
Q ss_pred CCCCCCCCCCC
Q ss_conf 88888865566
Q 002540 754 KPNLIPGWGQW 764 (911)
Q Consensus 754 ~D~tLPGWGsW 764 (911)
+++.+|||.+|
T Consensus 48 ~nV~~~g~~~W 58 (174)
T d1oh4a_ 48 LNVKLPGKSDW 58 (174)
T ss_dssp EEEEECSSSSC
T ss_pred EEEECCCCCCH
T ss_conf 99874787887
No 9
>d2h62a1 g.17.1.2 (A:12-114) Bone morphogenetic protein-2 (BMP-2) {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.19 E-value=1.9e+02 Score=3.75 Aligned_cols=5 Identities=60% Similarity=2.415 Sum_probs=0.0
Q ss_pred CCCCC
Q ss_conf 65566
Q 002540 760 GWGQW 764 (911)
Q Consensus 760 GWGsW 764 (911)
||+.|
T Consensus 16 GW~~w 20 (103)
T d2h62a1 16 GWNDW 20 (103)
T ss_dssp TCTTT
T ss_pred CCCCE
T ss_conf 89455
No 10
>d1mula_ a.55.1.1 (A:) HU protein {Escherichia coli [TaxId: 562]}
Probab=2.18 E-value=1.9e+02 Score=3.73 Aligned_cols=27 Identities=15% Similarity=0.199 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 58878999999861039999888888865566
Q 002540 733 VEEDFEEDKEKVLNEENPVPEKPNLIPGWGQW 764 (911)
Q Consensus 733 Vv~eF~kEK~~~ieee~pk~e~D~tLPGWGsW 764 (911)
++..|...=.+.+. ....+.|||||.|
T Consensus 24 ~v~~~~~~i~~~L~-----~~~~v~l~gfG~F 50 (90)
T d1mula_ 24 ALESTLAAITESLK-----EGDAVQLVGFGTF 50 (90)
T ss_dssp HHHHHHHHHHHHHH-----TTCCEEETTTEEE
T ss_pred HHHHHHHHHHHHHH-----HCCCCEECCCEEE
T ss_conf 99999999999997-----2997286572489
Done!