Query 002541
Match_columns 910
No_of_seqs 279 out of 422
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 02:04:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002541.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002541hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05701 WEMBL: Weak chloropla 100.0 5.8E-80 1.2E-84 716.2 71.8 522 256-791 1-522 (522)
2 KOG0161 Myosin class II heavy 99.8 7.8E-14 1.7E-18 178.8 65.6 403 370-816 1467-1916(1930)
3 PF05701 WEMBL: Weak chloropla 99.7 5E-11 1.1E-15 140.3 60.5 432 316-798 31-508 (522)
4 PF01576 Myosin_tail_1: Myosin 99.5 7.4E-16 1.6E-20 189.6 -0.4 525 265-815 293-857 (859)
5 TIGR02168 SMC_prok_B chromosom 99.4 6.4E-06 1.4E-10 104.4 75.7 67 552-618 679-745 (1179)
6 KOG0161 Myosin class II heavy 99.4 8.1E-07 1.8E-11 115.7 66.8 268 546-813 1403-1702(1930)
7 PRK02224 chromosome segregatio 99.4 2.5E-06 5.4E-11 106.4 66.8 44 731-778 645-688 (880)
8 TIGR02169 SMC_prok_A chromosom 99.4 7.5E-08 1.6E-12 122.1 53.5 61 280-345 150-210 (1164)
9 PRK02224 chromosome segregatio 99.3 1.1E-05 2.4E-10 100.7 67.7 74 286-359 208-284 (880)
10 TIGR02168 SMC_prok_B chromosom 99.3 2.4E-05 5.1E-10 99.4 71.1 9 297-305 252-260 (1179)
11 COG1196 Smc Chromosome segrega 99.3 2.3E-07 5E-12 118.9 52.1 139 280-438 152-290 (1163)
12 PF10174 Cast: RIM-binding pro 99.2 2.3E-05 5.1E-10 95.9 60.8 371 291-675 3-405 (775)
13 PF10174 Cast: RIM-binding pro 99.2 1.8E-05 3.8E-10 96.9 59.2 202 289-492 51-262 (775)
14 TIGR02169 SMC_prok_A chromosom 99.2 0.00013 2.8E-09 93.1 74.6 38 299-336 295-332 (1164)
15 TIGR00606 rad50 rad50. This fa 99.0 0.00043 9.4E-09 90.4 66.1 67 746-814 994-1062(1311)
16 TIGR00606 rad50 rad50. This fa 98.9 0.0012 2.7E-08 86.3 67.0 138 552-692 883-1021(1311)
17 COG1196 Smc Chromosome segrega 98.9 0.0012 2.5E-08 85.6 70.1 57 288-344 257-313 (1163)
18 KOG0996 Structural maintenance 98.9 0.00094 2E-08 83.1 61.2 87 370-456 476-562 (1293)
19 PRK03918 chromosome segregatio 98.8 0.002 4.3E-08 80.7 71.7 43 293-335 188-230 (880)
20 KOG4674 Uncharacterized conser 98.7 0.0055 1.2E-07 80.2 64.5 256 552-816 907-1184(1822)
21 PF01576 Myosin_tail_1: Myosin 98.6 5.1E-09 1.1E-13 129.7 0.0 260 551-813 378-644 (859)
22 PF07888 CALCOCO1: Calcium bin 98.6 0.0029 6.4E-08 74.8 46.3 102 570-688 356-457 (546)
23 PRK03918 chromosome segregatio 98.6 0.0063 1.4E-07 76.3 69.4 22 552-573 461-482 (880)
24 PF12128 DUF3584: Protein of u 98.6 0.0091 2E-07 77.7 68.1 227 554-791 604-843 (1201)
25 KOG4643 Uncharacterized coiled 98.6 0.0067 1.5E-07 74.8 48.4 126 277-418 163-288 (1195)
26 KOG4674 Uncharacterized conser 98.6 0.013 2.7E-07 77.0 66.8 126 287-415 915-1046(1822)
27 PF07888 CALCOCO1: Calcium bin 98.5 0.0069 1.5E-07 71.7 47.5 55 305-359 143-197 (546)
28 PF12128 DUF3584: Protein of u 98.4 0.023 5.1E-07 74.0 65.8 42 753-794 819-860 (1201)
29 KOG0964 Structural maintenance 98.4 0.0097 2.1E-07 73.3 43.8 71 381-451 224-294 (1200)
30 KOG0976 Rho/Rac1-interacting s 98.3 0.023 4.9E-07 68.7 53.9 34 758-791 484-517 (1265)
31 PRK04778 septation ring format 98.2 0.031 6.8E-07 67.4 47.6 109 287-409 82-190 (569)
32 PRK04863 mukB cell division pr 98.2 0.066 1.4E-06 70.8 50.6 64 281-352 277-340 (1486)
33 KOG0971 Microtubule-associated 98.2 0.041 8.9E-07 67.4 46.8 72 290-361 275-346 (1243)
34 KOG0994 Extracellular matrix g 98.2 0.048 1E-06 68.2 49.5 302 386-694 1421-1742(1758)
35 KOG0250 DNA repair protein RAD 98.2 0.054 1.2E-06 68.1 61.4 444 288-798 204-796 (1074)
36 PF00261 Tropomyosin: Tropomyo 98.2 0.0027 5.9E-08 68.2 29.8 129 566-694 101-229 (237)
37 KOG0250 DNA repair protein RAD 98.2 0.0092 2E-07 74.6 37.3 39 471-512 277-315 (1074)
38 KOG4673 Transcription factor T 98.1 0.049 1.1E-06 65.1 62.7 73 549-621 529-602 (961)
39 KOG0994 Extracellular matrix g 98.1 0.071 1.5E-06 66.8 49.7 23 312-334 1225-1247(1758)
40 KOG0996 Structural maintenance 98.1 0.082 1.8E-06 66.7 63.9 182 300-490 386-571 (1293)
41 PRK01156 chromosome segregatio 98.1 0.085 1.8E-06 66.8 73.1 46 293-338 192-237 (895)
42 PF00261 Tropomyosin: Tropomyo 98.1 0.0064 1.4E-07 65.4 29.8 95 559-653 122-216 (237)
43 PF00038 Filament: Intermediat 98.0 0.049 1.1E-06 60.3 40.7 29 293-321 6-34 (312)
44 KOG0933 Structural maintenance 97.9 0.18 3.8E-06 63.0 43.8 67 382-452 736-810 (1174)
45 PF09730 BicD: Microtubule-ass 97.8 0.19 4E-06 62.0 38.9 142 292-440 35-181 (717)
46 KOG0977 Nuclear envelope prote 97.8 0.18 3.9E-06 60.2 37.5 38 291-328 42-79 (546)
47 PRK04863 mukB cell division pr 97.8 0.39 8.5E-06 63.9 48.9 192 546-742 988-1200(1486)
48 KOG0977 Nuclear envelope prote 97.7 0.11 2.4E-06 61.8 34.3 125 299-442 93-217 (546)
49 KOG0971 Microtubule-associated 97.7 0.29 6.2E-06 60.5 56.7 147 371-520 281-445 (1243)
50 PF05483 SCP-1: Synaptonemal c 97.7 0.27 5.9E-06 59.3 63.6 82 550-631 443-524 (786)
51 PRK01156 chromosome segregatio 97.7 0.4 8.6E-06 60.8 70.7 28 318-345 196-223 (895)
52 PF09726 Macoilin: Transmembra 97.6 0.04 8.6E-07 67.8 29.3 226 311-580 424-652 (697)
53 KOG0612 Rho-associated, coiled 97.5 0.73 1.6E-05 58.9 44.5 46 293-338 489-534 (1317)
54 PRK11637 AmiB activator; Provi 97.4 0.21 4.5E-06 58.2 31.1 10 477-486 49-58 (428)
55 COG1579 Zn-ribbon protein, pos 97.3 0.032 6.8E-07 60.3 21.3 69 640-708 88-156 (239)
56 PHA02562 46 endonuclease subun 97.3 0.21 4.6E-06 59.5 30.6 24 387-410 174-197 (562)
57 PRK04778 septation ring format 97.3 0.76 1.6E-05 55.7 48.0 144 566-710 277-424 (569)
58 PF05557 MAD: Mitotic checkpoi 97.3 0.0032 7E-08 77.7 14.9 35 481-515 287-321 (722)
59 KOG0018 Structural maintenance 97.3 1.1 2.3E-05 56.8 38.9 178 574-798 803-981 (1141)
60 PHA02562 46 endonuclease subun 97.2 0.39 8.4E-06 57.3 31.4 35 568-602 327-361 (562)
61 KOG4673 Transcription factor T 97.2 0.87 1.9E-05 55.1 48.2 71 552-622 497-567 (961)
62 KOG0933 Structural maintenance 97.2 1.3 2.7E-05 55.9 59.6 245 549-816 793-1037(1174)
63 PRK11637 AmiB activator; Provi 97.2 0.54 1.2E-05 54.9 31.0 9 556-564 179-187 (428)
64 PF00038 Filament: Intermediat 97.2 0.6 1.3E-05 51.7 43.5 47 579-625 196-242 (312)
65 PF06160 EzrA: Septation ring 97.0 1.4 3.1E-05 53.4 50.3 107 289-409 80-186 (560)
66 PF05483 SCP-1: Synaptonemal c 96.9 1.9 4.1E-05 52.5 64.3 78 552-629 473-557 (786)
67 KOG4643 Uncharacterized coiled 96.8 2.5 5.3E-05 53.4 45.7 75 553-627 484-558 (1195)
68 KOG0980 Actin-binding protein 96.8 2.3 5E-05 53.0 36.2 69 289-361 349-417 (980)
69 PF05622 HOOK: HOOK protein; 96.8 0.00029 6.2E-09 86.7 0.0 38 376-413 314-351 (713)
70 COG1340 Uncharacterized archae 96.7 1.5 3.2E-05 48.9 37.2 104 551-662 139-242 (294)
71 KOG0976 Rho/Rac1-interacting s 96.7 2.7 5.9E-05 51.8 56.8 135 551-709 292-429 (1265)
72 KOG0964 Structural maintenance 96.6 3.5 7.5E-05 52.0 60.8 275 300-605 193-501 (1200)
73 KOG1029 Endocytic adaptor prot 96.5 3.3 7.1E-05 51.0 38.0 139 562-710 463-612 (1118)
74 COG4372 Uncharacterized protei 96.5 2.2 4.9E-05 48.8 32.1 59 291-349 81-139 (499)
75 TIGR03185 DNA_S_dndD DNA sulfu 96.5 3.4 7.4E-05 50.9 37.6 97 293-391 184-280 (650)
76 PRK09039 hypothetical protein; 96.5 0.23 5E-06 56.5 20.3 58 632-689 128-185 (343)
77 PF15070 GOLGA2L5: Putative go 96.5 3.4 7.4E-05 50.7 39.3 48 379-426 13-61 (617)
78 PF09730 BicD: Microtubule-ass 96.5 3.8 8.2E-05 50.9 47.1 120 301-457 30-149 (717)
79 COG1579 Zn-ribbon protein, pos 96.4 0.34 7.4E-06 52.5 19.7 54 638-691 93-146 (239)
80 PF09726 Macoilin: Transmembra 96.4 1.7 3.8E-05 53.9 28.2 162 289-450 423-608 (697)
81 PF05557 MAD: Mitotic checkpoi 96.4 0.003 6.4E-08 78.0 4.6 35 726-760 497-534 (722)
82 KOG0963 Transcription factor/C 96.4 3.8 8.2E-05 49.6 39.5 65 551-622 236-308 (629)
83 PF05622 HOOK: HOOK protein; 96.3 0.00092 2E-08 82.3 0.0 48 649-696 602-649 (713)
84 TIGR03185 DNA_S_dndD DNA sulfu 96.3 4.3 9.3E-05 50.0 40.0 53 576-628 389-443 (650)
85 KOG0946 ER-Golgi vesicle-tethe 96.3 2.7 5.8E-05 52.0 27.8 90 420-514 683-773 (970)
86 KOG0963 Transcription factor/C 96.2 4.7 0.0001 48.9 35.9 47 572-618 391-437 (629)
87 KOG1029 Endocytic adaptor prot 96.1 5.6 0.00012 49.1 42.8 12 153-164 225-236 (1118)
88 COG4372 Uncharacterized protei 96.1 3.7 8.1E-05 47.1 29.0 120 291-443 74-193 (499)
89 KOG0612 Rho-associated, coiled 96.1 7.5 0.00016 50.3 48.2 22 252-273 407-428 (1317)
90 KOG1003 Actin filament-coating 95.9 2.7 5.9E-05 44.2 26.2 118 577-694 80-197 (205)
91 PF06160 EzrA: Septation ring 95.9 6 0.00013 48.1 55.9 224 565-798 272-499 (560)
92 PRK09039 hypothetical protein; 95.9 0.95 2.1E-05 51.6 21.3 70 637-706 126-195 (343)
93 PF12718 Tropomyosin_1: Tropom 95.9 1.1 2.3E-05 45.2 19.2 40 638-677 77-116 (143)
94 PF10473 CENP-F_leu_zip: Leuci 95.8 1.4 3E-05 44.3 19.3 61 565-625 11-71 (140)
95 KOG4807 F-actin binding protei 95.7 2.7 5.8E-05 48.2 23.2 177 303-492 339-529 (593)
96 PF05911 DUF869: Plant protein 95.7 8.5 0.00018 48.4 35.3 247 384-698 14-303 (769)
97 KOG0946 ER-Golgi vesicle-tethe 95.6 9.4 0.0002 47.6 28.4 73 381-453 700-775 (970)
98 KOG0995 Centromere-associated 95.5 8 0.00017 46.5 42.4 59 545-603 412-471 (581)
99 COG4942 Membrane-bound metallo 95.5 7 0.00015 45.7 33.5 28 666-693 161-188 (420)
100 PF15070 GOLGA2L5: Putative go 95.2 11 0.00024 46.4 39.6 40 546-585 198-237 (617)
101 PF07926 TPR_MLP1_2: TPR/MLP1/ 95.2 3.4 7.3E-05 40.8 19.6 43 381-423 53-95 (132)
102 PF12718 Tropomyosin_1: Tropom 95.1 2.1 4.6E-05 43.0 18.1 54 553-606 17-70 (143)
103 PF09787 Golgin_A5: Golgin sub 95.1 11 0.00023 45.5 30.7 35 486-520 208-242 (511)
104 PF13514 AAA_27: AAA domain 94.9 18 0.0004 47.4 57.6 42 775-816 937-978 (1111)
105 COG1340 Uncharacterized archae 94.9 8.4 0.00018 43.1 36.7 56 391-446 45-100 (294)
106 KOG0980 Actin-binding protein 94.4 20 0.00043 45.3 34.5 73 372-444 402-474 (980)
107 COG0419 SbcC ATPase involved i 94.2 23 0.0005 45.5 69.1 22 769-790 717-738 (908)
108 TIGR03007 pepcterm_ChnLen poly 94.0 15 0.00033 43.5 25.0 153 551-705 205-377 (498)
109 KOG0978 E3 ubiquitin ligase in 93.9 22 0.00048 44.2 56.1 159 632-815 459-617 (698)
110 PF08317 Spc7: Spc7 kinetochor 93.9 14 0.00031 41.8 24.9 51 642-692 210-260 (325)
111 KOG0978 E3 ubiquitin ligase in 93.8 23 0.0005 44.0 63.0 88 259-346 11-110 (698)
112 TIGR01843 type_I_hlyD type I s 93.7 14 0.0003 42.2 23.4 20 651-670 206-225 (423)
113 PF10498 IFT57: Intra-flagella 93.6 1.9 4E-05 49.7 15.6 75 564-638 252-326 (359)
114 COG4477 EzrA Negative regulato 93.3 24 0.00052 42.5 47.5 16 634-649 436-451 (570)
115 COG4942 Membrane-bound metallo 93.2 21 0.00046 41.9 32.4 33 608-640 212-244 (420)
116 KOG1003 Actin filament-coating 93.1 13 0.00029 39.2 23.9 130 284-422 11-144 (205)
117 KOG0995 Centromere-associated 92.8 29 0.00062 42.1 43.1 56 547-602 422-477 (581)
118 PF05384 DegS: Sensor protein 92.3 12 0.00025 38.6 17.6 116 564-695 9-124 (159)
119 TIGR01843 type_I_hlyD type I s 92.3 21 0.00046 40.7 22.1 34 651-684 199-232 (423)
120 TIGR01005 eps_transp_fam exopo 92.2 39 0.00085 42.4 26.4 46 578-623 288-333 (754)
121 PF04849 HAP1_N: HAP1 N-termin 92.2 24 0.00052 39.9 27.1 90 598-694 205-294 (306)
122 COG3883 Uncharacterized protei 92.2 22 0.00048 39.4 23.5 51 549-599 44-94 (265)
123 PF07111 HCR: Alpha helical co 92.2 38 0.00081 42.1 63.8 126 470-602 237-362 (739)
124 PF07926 TPR_MLP1_2: TPR/MLP1/ 92.1 13 0.00028 36.7 17.8 14 584-597 30-43 (132)
125 smart00787 Spc7 Spc7 kinetocho 92.0 11 0.00024 42.6 18.7 27 571-597 165-191 (312)
126 PF14915 CCDC144C: CCDC144C pr 91.8 26 0.00056 39.4 31.1 26 433-458 3-28 (305)
127 PRK10246 exonuclease subunit S 91.8 54 0.0012 43.1 68.1 20 801-820 862-881 (1047)
128 PF08317 Spc7: Spc7 kinetochor 91.7 27 0.0006 39.5 27.3 40 654-693 229-268 (325)
129 PF09728 Taxilin: Myosin-like 91.7 27 0.00059 39.5 39.4 63 373-435 22-84 (309)
130 PF10186 Atg14: UV radiation r 91.6 20 0.00044 39.0 20.1 38 672-709 122-159 (302)
131 PF14662 CCDC155: Coiled-coil 91.6 21 0.00045 37.8 27.3 140 369-515 39-181 (193)
132 PF06818 Fez1: Fez1; InterPro 91.4 7.4 0.00016 41.4 15.4 74 554-627 14-87 (202)
133 KOG0979 Structural maintenance 91.3 55 0.0012 42.2 31.4 237 388-686 175-411 (1072)
134 PF08614 ATG16: Autophagy prot 90.9 2.6 5.7E-05 44.1 11.8 9 661-669 164-172 (194)
135 PF05010 TACC: Transforming ac 90.8 26 0.00056 37.6 21.2 135 289-427 67-201 (207)
136 smart00787 Spc7 Spc7 kinetocho 90.6 16 0.00034 41.5 18.2 52 642-693 212-263 (312)
137 PF04156 IncA: IncA protein; 90.5 12 0.00025 38.7 16.0 68 558-625 82-149 (191)
138 COG0419 SbcC ATPase involved i 90.5 64 0.0014 41.6 71.0 23 776-798 717-739 (908)
139 PF12325 TMF_TATA_bd: TATA ele 90.3 14 0.00029 36.4 15.2 10 670-679 97-106 (120)
140 PF13851 GAS: Growth-arrest sp 90.3 28 0.0006 37.0 21.9 77 373-449 86-170 (201)
141 PF06008 Laminin_I: Laminin Do 90.0 33 0.00072 37.5 29.8 52 574-625 41-92 (264)
142 KOG0249 LAR-interacting protei 89.9 17 0.00036 45.0 18.3 61 552-612 137-197 (916)
143 KOG0999 Microtubule-associated 89.8 55 0.0012 39.6 42.2 69 385-453 6-74 (772)
144 PF00769 ERM: Ezrin/radixin/mo 89.7 16 0.00034 40.0 16.8 118 586-710 13-130 (246)
145 PF15294 Leu_zip: Leucine zipp 89.6 39 0.00085 37.8 21.2 125 582-710 129-262 (278)
146 PF13514 AAA_27: AAA domain 89.6 83 0.0018 41.5 65.1 38 369-406 238-275 (1111)
147 KOG0999 Microtubule-associated 89.5 57 0.0012 39.5 50.8 318 290-620 14-374 (772)
148 TIGR03007 pepcterm_ChnLen poly 89.5 53 0.0011 39.0 25.0 32 669-700 355-386 (498)
149 PF05667 DUF812: Protein of un 89.4 63 0.0014 39.9 36.0 18 472-489 416-433 (594)
150 PF04111 APG6: Autophagy prote 89.4 5 0.00011 45.3 13.2 77 552-629 18-94 (314)
151 PF05384 DegS: Sensor protein 89.2 29 0.00064 35.7 18.8 116 551-672 28-143 (159)
152 PF04849 HAP1_N: HAP1 N-termin 89.0 46 0.001 37.7 26.6 96 571-666 206-301 (306)
153 PF06818 Fez1: Fez1; InterPro 88.9 32 0.00068 36.8 17.6 41 773-816 133-173 (202)
154 PF15397 DUF4618: Domain of un 88.4 45 0.00098 36.9 26.5 21 385-405 7-27 (258)
155 PF14662 CCDC155: Coiled-coil 88.4 37 0.00081 36.0 24.8 63 556-618 66-128 (193)
156 PF15066 CAGE1: Cancer-associa 88.1 64 0.0014 38.3 25.5 20 470-489 448-467 (527)
157 PF05335 DUF745: Protein of un 86.8 46 0.00099 35.2 17.7 36 642-677 138-173 (188)
158 COG4477 EzrA Negative regulato 86.7 83 0.0018 38.1 48.1 124 582-712 351-490 (570)
159 PF09728 Taxilin: Myosin-like 86.5 63 0.0014 36.6 37.4 64 381-444 9-72 (309)
160 PF15619 Lebercilin: Ciliary p 85.9 51 0.0011 35.0 23.3 101 592-692 47-148 (194)
161 KOG0972 Huntingtin interacting 85.9 27 0.00058 39.1 15.4 77 562-638 257-333 (384)
162 PRK12472 hypothetical protein; 85.8 18 0.00038 43.1 14.9 93 649-778 205-297 (508)
163 PF07111 HCR: Alpha helical co 84.9 1.1E+02 0.0025 38.1 60.0 50 292-341 163-212 (739)
164 PF04012 PspA_IM30: PspA/IM30 84.9 57 0.0012 34.6 18.8 54 651-704 94-147 (221)
165 PRK10476 multidrug resistance 84.7 45 0.00097 37.7 17.5 31 372-402 151-181 (346)
166 PF00769 ERM: Ezrin/radixin/mo 84.6 43 0.00092 36.7 16.5 45 561-605 16-60 (246)
167 KOG0804 Cytoplasmic Zn-finger 84.6 55 0.0012 38.7 17.8 26 373-398 347-372 (493)
168 PF10498 IFT57: Intra-flagella 84.3 19 0.00041 41.6 14.2 96 592-687 252-353 (359)
169 PF15619 Lebercilin: Ciliary p 84.1 62 0.0013 34.4 25.4 129 551-682 62-191 (194)
170 KOG0249 LAR-interacting protei 83.7 1.3E+02 0.0028 37.7 23.8 22 883-904 516-537 (916)
171 PF12325 TMF_TATA_bd: TATA ele 83.5 48 0.001 32.7 15.7 43 554-596 20-62 (120)
172 PF04012 PspA_IM30: PspA/IM30 83.5 65 0.0014 34.1 22.8 113 287-415 26-140 (221)
173 PF04111 APG6: Autophagy prote 83.5 16 0.00034 41.4 13.0 70 642-711 65-134 (314)
174 TIGR00998 8a0101 efflux pump m 83.3 59 0.0013 36.2 17.5 90 290-396 79-169 (334)
175 PF13851 GAS: Growth-arrest sp 83.2 68 0.0015 34.1 22.0 53 552-604 29-81 (201)
176 PF04156 IncA: IncA protein; 83.2 54 0.0012 33.8 16.0 51 549-599 87-137 (191)
177 PF05278 PEARLI-4: Arabidopsis 83.1 83 0.0018 35.1 21.0 80 258-341 97-181 (269)
178 KOG0018 Structural maintenance 83.1 1.6E+02 0.0035 38.4 58.3 223 580-814 654-892 (1141)
179 TIGR01005 eps_transp_fam exopo 82.5 1.5E+02 0.0031 37.4 24.0 12 261-272 134-145 (754)
180 PF05010 TACC: Transforming ac 82.3 77 0.0017 34.1 27.0 117 556-692 68-184 (207)
181 PF05335 DUF745: Protein of un 82.1 73 0.0016 33.7 17.4 62 641-702 116-177 (188)
182 TIGR00634 recN DNA repair prot 81.8 1.3E+02 0.0029 36.6 25.2 25 381-405 162-186 (563)
183 PF05276 SH3BP5: SH3 domain-bi 81.6 88 0.0019 34.4 25.7 44 477-520 16-60 (239)
184 PF09304 Cortex-I_coil: Cortex 81.5 54 0.0012 31.8 14.5 24 546-569 12-35 (107)
185 TIGR01010 BexC_CtrB_KpsE polys 81.3 1E+02 0.0022 35.3 18.7 128 571-698 170-307 (362)
186 PRK11281 hypothetical protein; 81.1 2E+02 0.0044 38.2 40.3 44 395-438 136-179 (1113)
187 COG2433 Uncharacterized conser 81.0 65 0.0014 39.5 17.2 33 657-689 476-508 (652)
188 PF04582 Reo_sigmaC: Reovirus 80.9 2.8 6E-05 47.5 5.8 123 566-688 30-152 (326)
189 PF08614 ATG16: Autophagy prot 80.5 21 0.00044 37.5 11.8 28 664-691 146-173 (194)
190 PF10168 Nup88: Nuclear pore c 80.4 95 0.0021 39.2 19.3 91 310-400 570-666 (717)
191 PRK15178 Vi polysaccharide exp 80.1 45 0.00099 39.5 15.5 36 665-700 347-382 (434)
192 PTZ00121 MAEBL; Provisional 79.9 2.4E+02 0.0052 38.3 60.8 18 145-162 901-919 (2084)
193 PF02050 FliJ: Flagellar FliJ 79.8 50 0.0011 30.4 16.4 84 378-461 3-91 (123)
194 KOG0962 DNA repair protein RAD 79.8 2.3E+02 0.005 38.0 49.1 40 581-622 1011-1050(1294)
195 COG3883 Uncharacterized protei 79.6 1.1E+02 0.0024 34.2 24.7 161 290-450 37-204 (265)
196 KOG4360 Uncharacterized coiled 79.4 66 0.0014 38.7 16.2 57 569-625 203-259 (596)
197 PRK10884 SH3 domain-containing 78.7 23 0.0005 37.8 11.6 73 283-358 92-164 (206)
198 COG1842 PspA Phage shock prote 78.6 1.1E+02 0.0023 33.4 19.0 59 652-710 96-156 (225)
199 COG2433 Uncharacterized conser 78.1 32 0.00069 42.0 13.5 49 554-602 419-467 (652)
200 PF13870 DUF4201: Domain of un 77.7 90 0.0019 32.1 22.4 86 572-657 43-128 (177)
201 TIGR00634 recN DNA repair prot 77.5 1.8E+02 0.0039 35.5 27.9 45 317-361 159-203 (563)
202 KOG0804 Cytoplasmic Zn-finger 76.9 1.5E+02 0.0033 35.3 18.0 98 576-676 352-449 (493)
203 TIGR01010 BexC_CtrB_KpsE polys 76.6 69 0.0015 36.6 15.5 53 575-627 211-263 (362)
204 PF15290 Syntaphilin: Golgi-lo 76.6 43 0.00094 37.3 12.9 62 423-505 83-144 (305)
205 TIGR03017 EpsF chain length de 76.5 1.6E+02 0.0034 34.4 26.3 46 579-624 255-300 (444)
206 PF10146 zf-C4H2: Zinc finger- 76.3 80 0.0017 34.4 15.0 48 546-593 35-82 (230)
207 PF05266 DUF724: Protein of un 76.1 65 0.0014 34.1 13.9 54 634-687 131-184 (190)
208 PF10234 Cluap1: Clusterin-ass 75.5 78 0.0017 35.3 14.8 65 562-626 174-238 (267)
209 PF10481 CENP-F_N: Cenp-F N-te 75.4 1.4E+02 0.0031 33.4 17.5 8 704-711 183-190 (307)
210 TIGR02680 conserved hypothetic 74.2 3.4E+02 0.0073 37.0 71.8 62 752-814 923-984 (1353)
211 PF06008 Laminin_I: Laminin Do 74.1 1.4E+02 0.0031 32.7 31.7 18 645-662 124-141 (264)
212 KOG4809 Rab6 GTPase-interactin 74.0 2.2E+02 0.0047 34.8 37.7 45 317-361 234-278 (654)
213 COG3524 KpsE Capsule polysacch 73.6 92 0.002 35.4 14.6 46 579-624 224-269 (372)
214 PRK00409 recombination and DNA 73.5 78 0.0017 40.3 16.1 42 300-341 504-545 (782)
215 PF11570 E2R135: Coiled-coil r 73.4 1E+02 0.0023 30.8 14.5 38 641-678 77-114 (136)
216 PF11559 ADIP: Afadin- and alp 73.4 1E+02 0.0023 30.8 16.2 87 384-491 63-149 (151)
217 PLN03229 acetyl-coenzyme A car 73.3 2.6E+02 0.0057 35.4 26.1 94 288-382 433-544 (762)
218 TIGR01069 mutS2 MutS2 family p 73.2 83 0.0018 40.0 16.2 41 301-341 500-540 (771)
219 COG4026 Uncharacterized protei 73.1 51 0.0011 35.7 12.1 18 608-625 151-168 (290)
220 PRK10929 putative mechanosensi 73.1 3.3E+02 0.0071 36.4 39.3 20 384-403 113-132 (1109)
221 PF11570 E2R135: Coiled-coil r 72.6 1.1E+02 0.0024 30.7 13.7 117 289-422 13-133 (136)
222 PF12795 MscS_porin: Mechanose 72.1 1.5E+02 0.0032 32.1 24.7 109 484-603 30-138 (240)
223 KOG4360 Uncharacterized coiled 72.1 2.3E+02 0.005 34.4 18.0 25 562-586 164-188 (596)
224 PRK10884 SH3 domain-containing 71.8 60 0.0013 34.8 12.5 24 549-572 92-115 (206)
225 PRK15136 multidrug efflux syst 71.2 1.6E+02 0.0034 34.3 16.8 33 371-403 156-188 (390)
226 PF15397 DUF4618: Domain of un 70.5 1.8E+02 0.0039 32.4 30.0 28 551-578 82-109 (258)
227 PF11932 DUF3450: Protein of u 70.5 1E+02 0.0022 33.5 14.4 59 569-627 40-98 (251)
228 PLN03188 kinesin-12 family pro 70.3 3.8E+02 0.0083 36.0 46.0 62 611-676 1178-1239(1320)
229 KOG3647 Predicted coiled-coil 70.3 1.7E+02 0.0038 32.6 15.5 70 549-625 111-180 (338)
230 COG4026 Uncharacterized protei 70.3 81 0.0018 34.2 12.8 64 562-625 133-196 (290)
231 PF15290 Syntaphilin: Golgi-lo 69.4 1.4E+02 0.0031 33.5 14.7 55 640-694 116-170 (305)
232 PF10234 Cluap1: Clusterin-ass 69.3 77 0.0017 35.4 13.0 51 549-599 168-218 (267)
233 KOG4677 Golgi integral membran 68.9 2.6E+02 0.0056 33.5 24.5 40 554-593 306-345 (554)
234 PF10146 zf-C4H2: Zinc finger- 68.8 1.6E+02 0.0034 32.2 15.0 68 594-675 34-101 (230)
235 PF09738 DUF2051: Double stran 68.7 73 0.0016 36.1 12.9 17 806-822 233-249 (302)
236 PRK10869 recombination and rep 67.6 3E+02 0.0065 33.7 28.9 34 328-361 166-199 (553)
237 PRK00409 recombination and DNA 67.5 1.5E+02 0.0033 37.8 16.8 20 646-665 575-594 (782)
238 COG1566 EmrA Multidrug resista 67.1 1.9E+02 0.0041 33.6 16.0 82 303-393 89-171 (352)
239 PF08647 BRE1: BRE1 E3 ubiquit 66.1 1.1E+02 0.0024 28.7 11.7 65 558-622 4-68 (96)
240 TIGR02971 heterocyst_DevB ABC 65.8 2.2E+02 0.0049 31.7 19.3 27 371-397 133-159 (327)
241 PRK10869 recombination and rep 65.7 3.2E+02 0.007 33.4 24.3 31 380-410 157-187 (553)
242 COG1842 PspA Phage shock prote 64.6 2.2E+02 0.0047 31.1 24.6 57 644-700 95-151 (225)
243 PF10481 CENP-F_N: Cenp-F N-te 64.3 2.5E+02 0.0054 31.6 15.9 59 556-614 17-75 (307)
244 TIGR02977 phageshock_pspA phag 64.2 2.1E+02 0.0045 30.7 24.5 44 575-618 28-71 (219)
245 PRK10476 multidrug resistance 64.1 2.5E+02 0.0055 31.7 18.0 18 551-568 87-104 (346)
246 PF09738 DUF2051: Double stran 64.0 1.2E+02 0.0026 34.4 13.5 62 571-632 105-166 (302)
247 PF03962 Mnd1: Mnd1 family; I 63.8 1.9E+02 0.004 30.6 14.1 20 640-659 134-153 (188)
248 PF05262 Borrelia_P83: Borreli 63.7 3.4E+02 0.0073 33.0 18.6 8 226-233 158-165 (489)
249 PRK11519 tyrosine kinase; Prov 63.6 3.9E+02 0.0085 33.7 20.1 10 805-814 507-516 (719)
250 PRK10929 putative mechanosensi 63.4 4.9E+02 0.011 34.8 38.7 77 284-360 65-157 (1109)
251 PF07889 DUF1664: Protein of u 63.4 1.7E+02 0.0036 29.3 13.2 71 545-618 38-108 (126)
252 PF14197 Cep57_CLD_2: Centroso 63.0 1.1E+02 0.0025 27.2 10.5 59 382-440 7-65 (69)
253 PF05278 PEARLI-4: Arabidopsis 62.8 2.6E+02 0.0056 31.4 17.1 18 586-603 160-177 (269)
254 COG5185 HEC1 Protein involved 62.3 3.5E+02 0.0075 32.6 31.0 103 572-674 296-401 (622)
255 PF12777 MT: Microtubule-bindi 62.1 22 0.00047 40.6 7.4 84 369-452 224-307 (344)
256 PRK03598 putative efflux pump 62.0 1.6E+02 0.0035 33.0 14.3 29 372-400 144-172 (331)
257 PLN03229 acetyl-coenzyme A car 61.6 4.4E+02 0.0095 33.6 24.3 13 575-587 670-682 (762)
258 TIGR01069 mutS2 MutS2 family p 61.5 2E+02 0.0043 36.8 16.2 18 647-664 571-588 (771)
259 PRK13454 F0F1 ATP synthase sub 61.5 2.1E+02 0.0045 29.8 14.9 73 252-331 24-102 (181)
260 KOG1962 B-cell receptor-associ 61.3 66 0.0014 34.8 10.3 49 553-601 161-209 (216)
261 KOG0239 Kinesin (KAR3 subfamil 60.2 4.5E+02 0.0097 33.2 18.6 20 885-904 571-590 (670)
262 PF10168 Nup88: Nuclear pore c 59.9 4.7E+02 0.01 33.3 23.7 13 497-509 651-663 (717)
263 PRK03598 putative efflux pump 59.7 2.7E+02 0.0058 31.2 15.5 19 291-309 81-99 (331)
264 KOG2264 Exostosin EXT1L [Signa 59.6 56 0.0012 39.7 10.1 65 547-611 83-147 (907)
265 KOG2077 JNK/SAPK-associated pr 59.5 1.1E+02 0.0024 37.3 12.4 55 602-656 325-379 (832)
266 PF08826 DMPK_coil: DMPK coile 59.4 80 0.0017 27.7 8.6 31 586-616 19-49 (61)
267 cd07647 F-BAR_PSTPIP The F-BAR 59.3 2.6E+02 0.0057 30.2 17.2 58 648-705 120-182 (239)
268 PF07106 TBPIP: Tat binding pr 59.2 44 0.00096 34.1 8.4 35 560-594 75-109 (169)
269 PF09789 DUF2353: Uncharacteri 59.1 3.3E+02 0.0071 31.3 26.3 37 595-631 75-111 (319)
270 PF09755 DUF2046: Uncharacteri 59.0 3.2E+02 0.007 31.2 37.6 59 382-440 36-95 (310)
271 KOG0288 WD40 repeat protein Ti 58.4 3.8E+02 0.0082 31.8 17.5 60 563-622 12-71 (459)
272 PF11559 ADIP: Afadin- and alp 58.3 2E+02 0.0044 28.7 16.8 49 567-615 62-110 (151)
273 cd07672 F-BAR_PSTPIP2 The F-BA 57.9 2.9E+02 0.0062 30.3 16.3 15 547-561 58-72 (240)
274 KOG1962 B-cell receptor-associ 57.9 90 0.0019 33.8 10.5 61 385-445 149-209 (216)
275 cd07673 F-BAR_FCHO2 The F-BAR 57.2 3.1E+02 0.0067 30.4 15.1 45 572-616 61-105 (269)
276 PF08606 Prp19: Prp19/Pso4-lik 55.2 1.1E+02 0.0024 27.6 8.9 56 375-430 10-65 (70)
277 PRK09841 cryptic autophosphory 55.1 5.4E+02 0.012 32.6 19.7 11 804-814 511-521 (726)
278 PF09304 Cortex-I_coil: Cortex 54.8 2.1E+02 0.0046 27.8 13.2 60 577-636 15-74 (107)
279 COG3074 Uncharacterized protei 53.7 1.4E+02 0.0031 26.9 9.2 30 660-689 44-73 (79)
280 PF11172 DUF2959: Protein of u 53.7 3.2E+02 0.0068 29.5 19.1 128 285-425 22-150 (201)
281 TIGR02473 flagell_FliJ flagell 52.9 2.2E+02 0.0049 27.5 17.5 90 373-462 13-108 (141)
282 PF08826 DMPK_coil: DMPK coile 52.8 76 0.0017 27.8 7.4 44 609-652 14-57 (61)
283 PRK15422 septal ring assembly 52.7 1.4E+02 0.003 27.5 9.3 37 653-689 37-73 (79)
284 PRK11519 tyrosine kinase; Prov 52.7 4.5E+02 0.0098 33.2 17.3 16 500-515 261-276 (719)
285 TIGR02977 phageshock_pspA phag 52.0 3.3E+02 0.0071 29.2 26.4 119 288-422 28-148 (219)
286 KOG4593 Mitotic checkpoint pro 51.8 6E+02 0.013 32.1 55.4 53 640-692 460-512 (716)
287 PF12795 MscS_porin: Mechanose 51.7 3.4E+02 0.0074 29.3 22.3 52 580-631 80-131 (240)
288 PF06785 UPF0242: Uncharacteri 51.6 4.4E+02 0.0095 30.5 18.9 125 561-692 89-217 (401)
289 PF14992 TMCO5: TMCO5 family 50.1 3.2E+02 0.0069 30.9 13.5 53 564-616 109-161 (280)
290 COG5420 Uncharacterized conser 49.7 1.5E+02 0.0032 26.4 8.5 61 328-400 8-68 (71)
291 PF04582 Reo_sigmaC: Reovirus 49.2 34 0.00073 39.1 6.0 13 642-654 120-132 (326)
292 PF13166 AAA_13: AAA domain 49.2 6.2E+02 0.013 31.5 28.7 51 568-618 421-471 (712)
293 PRK09841 cryptic autophosphory 49.0 6.6E+02 0.014 31.8 19.6 17 641-657 370-386 (726)
294 KOG0243 Kinesin-like protein [ 49.0 7.8E+02 0.017 32.6 50.2 33 419-451 480-512 (1041)
295 TIGR01000 bacteriocin_acc bact 48.2 5.3E+02 0.012 30.5 22.0 17 552-568 99-115 (457)
296 TIGR02971 heterocyst_DevB ABC 48.1 4.3E+02 0.0094 29.4 20.0 6 888-893 316-321 (327)
297 PRK15178 Vi polysaccharide exp 47.9 5.6E+02 0.012 30.7 20.7 126 572-697 243-372 (434)
298 PF08606 Prp19: Prp19/Pso4-lik 47.6 1.6E+02 0.0034 26.7 8.6 54 571-624 15-68 (70)
299 PF08581 Tup_N: Tup N-terminal 47.4 2.3E+02 0.005 26.1 10.2 11 612-622 63-73 (79)
300 KOG4687 Uncharacterized coiled 47.4 4.6E+02 0.01 29.5 22.4 85 326-413 30-116 (389)
301 PF12761 End3: Actin cytoskele 47.4 1.8E+02 0.004 31.1 10.7 33 369-401 163-195 (195)
302 PF06120 Phage_HK97_TLTM: Tail 47.2 4.9E+02 0.011 29.7 22.5 103 582-687 71-173 (301)
303 KOG4787 Uncharacterized conser 46.8 5.9E+02 0.013 31.6 15.6 111 554-669 376-487 (852)
304 COG5185 HEC1 Protein involved 46.6 6.1E+02 0.013 30.7 37.1 47 291-338 271-317 (622)
305 PF07798 DUF1640: Protein of u 46.5 3.6E+02 0.0077 28.0 15.0 21 579-599 74-94 (177)
306 TIGR02338 gimC_beta prefoldin, 45.3 2.8E+02 0.0061 26.5 11.8 33 655-687 74-106 (110)
307 KOG2991 Splicing regulator [RN 45.2 4.8E+02 0.01 29.2 27.6 20 498-517 183-202 (330)
308 PF13942 Lipoprotein_20: YfhG 45.0 1.8E+02 0.004 30.5 10.0 84 279-399 73-156 (179)
309 KOG4403 Cell surface glycoprot 44.6 6.3E+02 0.014 30.3 20.7 53 650-702 349-416 (575)
310 cd07648 F-BAR_FCHO The F-BAR ( 44.5 4.5E+02 0.0098 28.6 17.8 114 572-693 54-167 (261)
311 PF07889 DUF1664: Protein of u 44.4 3.4E+02 0.0073 27.1 12.4 24 577-600 42-65 (126)
312 PLN02939 transferase, transfer 42.9 9.4E+02 0.02 31.8 29.6 21 386-406 225-245 (977)
313 PF09787 Golgin_A5: Golgin sub 42.7 7E+02 0.015 30.3 39.1 50 291-340 116-169 (511)
314 PRK11281 hypothetical protein; 42.6 1E+03 0.022 32.1 44.0 58 382-439 194-251 (1113)
315 COG0497 RecN ATPase involved i 42.5 7.5E+02 0.016 30.6 28.7 36 326-361 164-199 (557)
316 PRK03947 prefoldin subunit alp 42.3 3.5E+02 0.0076 26.7 13.3 18 658-675 111-128 (140)
317 TIGR03017 EpsF chain length de 42.1 6.2E+02 0.013 29.5 22.8 28 680-707 339-366 (444)
318 cd07680 F-BAR_PACSIN1 The F-BA 41.6 5.4E+02 0.012 28.7 15.7 33 676-708 168-200 (258)
319 PRK12472 hypothetical protein; 41.6 4E+02 0.0087 32.3 13.3 89 293-398 213-301 (508)
320 PF11180 DUF2968: Protein of u 41.1 4.8E+02 0.01 27.9 15.3 20 266-285 66-85 (192)
321 PF04728 LPP: Lipoprotein leuc 41.0 2E+02 0.0044 24.9 8.0 42 560-601 6-47 (56)
322 TIGR02231 conserved hypothetic 40.9 3.8E+02 0.0082 32.4 13.6 31 284-314 71-101 (525)
323 PTZ00121 MAEBL; Provisional 40.8 1.2E+03 0.026 32.4 63.0 31 413-443 1313-1343(2084)
324 KOG0239 Kinesin (KAR3 subfamil 40.4 8.7E+02 0.019 30.7 19.2 33 660-692 260-292 (670)
325 PF05103 DivIVA: DivIVA protei 40.2 20 0.00043 34.6 2.2 32 566-597 27-58 (131)
326 PF10267 Tmemb_cc2: Predicted 40.0 7E+02 0.015 29.5 15.6 16 348-363 252-267 (395)
327 KOG2751 Beclin-like protein [S 39.8 6.7E+02 0.014 30.0 14.5 75 287-361 146-225 (447)
328 KOG2077 JNK/SAPK-associated pr 39.6 6.5E+02 0.014 31.2 14.5 67 559-628 313-379 (832)
329 KOG1853 LIS1-interacting prote 39.5 5.8E+02 0.013 28.5 22.4 35 370-404 49-83 (333)
330 PF14915 CCDC144C: CCDC144C pr 39.1 6.4E+02 0.014 28.8 41.6 53 374-426 64-116 (305)
331 PF03904 DUF334: Domain of unk 39.1 5.6E+02 0.012 28.1 15.8 56 547-604 35-90 (230)
332 PF06005 DUF904: Protein of un 38.9 3E+02 0.0064 24.9 10.9 28 587-614 41-68 (72)
333 KOG0972 Huntingtin interacting 38.7 6.5E+02 0.014 28.7 16.4 87 496-601 238-324 (384)
334 PF15066 CAGE1: Cancer-associa 38.6 7.9E+02 0.017 29.7 36.1 114 327-449 363-476 (527)
335 COG3524 KpsE Capsule polysacch 38.5 6.7E+02 0.014 28.9 15.9 50 546-595 226-275 (372)
336 PRK09343 prefoldin subunit bet 38.4 3.9E+02 0.0085 26.1 12.7 33 586-618 8-40 (121)
337 PF13863 DUF4200: Domain of un 38.2 3.7E+02 0.008 25.8 15.1 33 654-686 73-105 (126)
338 PF07798 DUF1640: Protein of u 37.9 4.8E+02 0.01 27.0 18.6 9 507-515 59-67 (177)
339 PF15294 Leu_zip: Leucine zipp 36.9 6.7E+02 0.014 28.4 23.0 45 394-438 132-176 (278)
340 PF05377 FlaC_arch: Flagella a 36.9 1.2E+02 0.0027 26.1 6.1 35 567-601 3-37 (55)
341 PF08581 Tup_N: Tup N-terminal 36.6 3.4E+02 0.0074 25.0 11.0 48 579-626 5-52 (79)
342 PRK10246 exonuclease subunit S 36.4 1.2E+03 0.025 31.1 67.6 14 729-742 774-787 (1047)
343 PRK15422 septal ring assembly 35.8 3.6E+02 0.0078 25.0 10.7 53 550-602 18-70 (79)
344 PF06785 UPF0242: Uncharacteri 35.8 7.6E+02 0.016 28.7 20.1 11 806-816 338-348 (401)
345 cd07647 F-BAR_PSTPIP The F-BAR 35.8 5.9E+02 0.013 27.5 18.8 57 300-359 90-146 (239)
346 PF04871 Uso1_p115_C: Uso1 / p 35.6 4.7E+02 0.01 26.2 14.4 25 666-690 81-105 (136)
347 TIGR00998 8a0101 efflux pump m 35.4 6.6E+02 0.014 27.9 16.1 39 561-599 84-122 (334)
348 KOG0288 WD40 repeat protein Ti 34.6 8.7E+02 0.019 29.0 17.2 15 501-515 8-22 (459)
349 TIGR02231 conserved hypothetic 34.5 3.4E+02 0.0074 32.7 11.9 27 552-578 73-99 (525)
350 PF15254 CCDC14: Coiled-coil d 34.5 1.1E+03 0.024 30.3 25.5 52 571-622 427-478 (861)
351 TIGR03545 conserved hypothetic 34.3 3E+02 0.0065 33.9 11.3 38 640-677 211-248 (555)
352 COG3352 FlaC Putative archaeal 33.5 2.9E+02 0.0063 28.5 9.1 62 559-620 46-107 (157)
353 PHA03011 hypothetical protein; 33.5 3.2E+02 0.0069 26.4 8.8 56 391-446 61-116 (120)
354 PF02994 Transposase_22: L1 tr 33.2 88 0.0019 36.3 6.4 12 838-849 323-334 (370)
355 KOG2264 Exostosin EXT1L [Signa 33.1 3.5E+02 0.0076 33.3 11.1 67 559-625 81-147 (907)
356 PRK11578 macrolide transporter 32.9 6.2E+02 0.013 28.9 13.2 30 372-401 143-172 (370)
357 PRK05689 fliJ flagellar biosyn 32.9 4.9E+02 0.011 25.7 15.5 88 374-461 17-110 (147)
358 PTZ00464 SNF-7-like protein; P 32.8 6.6E+02 0.014 27.1 21.2 18 469-486 158-175 (211)
359 PF10191 COG7: Golgi complex c 32.8 1.2E+03 0.025 30.0 17.6 60 568-631 67-126 (766)
360 PRK10698 phage shock protein P 32.8 6.6E+02 0.014 27.1 23.8 48 571-618 24-71 (222)
361 PF02403 Seryl_tRNA_N: Seryl-t 32.8 4.2E+02 0.0091 24.8 10.9 16 610-625 33-48 (108)
362 KOG4403 Cell surface glycoprot 32.6 9.5E+02 0.021 28.9 22.0 33 355-390 294-326 (575)
363 PF04912 Dynamitin: Dynamitin 32.5 8.5E+02 0.019 28.3 28.4 61 351-411 213-285 (388)
364 smart00806 AIP3 Actin interact 32.1 9.5E+02 0.021 28.8 19.6 31 423-453 297-327 (426)
365 PF08647 BRE1: BRE1 E3 ubiquit 31.4 4.5E+02 0.0097 24.7 12.1 21 571-591 45-65 (96)
366 KOG0982 Centrosomal protein Nu 31.2 9.9E+02 0.022 28.7 22.5 8 33-40 29-36 (502)
367 PF12001 DUF3496: Domain of un 31.1 2.8E+02 0.006 27.2 8.3 54 283-336 6-67 (111)
368 PHA03247 large tegument protei 30.9 2E+03 0.044 32.2 21.4 59 653-711 1565-1627(3151)
369 PRK09578 periplasmic multidrug 30.8 2.2E+02 0.0049 32.7 9.2 31 372-402 138-168 (385)
370 PF02994 Transposase_22: L1 tr 30.7 92 0.002 36.2 6.0 7 723-729 248-254 (370)
371 PF15188 CCDC-167: Coiled-coil 30.6 2.5E+02 0.0054 26.3 7.5 27 289-315 3-29 (85)
372 PRK15030 multidrug efflux syst 30.6 2.4E+02 0.0052 32.7 9.4 31 372-402 140-170 (397)
373 KOG3156 Uncharacterized membra 30.5 5E+02 0.011 28.2 10.8 36 564-599 101-137 (220)
374 TIGR03545 conserved hypothetic 30.4 5.1E+02 0.011 31.9 12.4 11 768-778 296-306 (555)
375 COG4985 ABC-type phosphate tra 29.8 6.2E+02 0.013 28.0 11.3 16 326-341 186-201 (289)
376 PF10805 DUF2730: Protein of u 29.8 4.5E+02 0.0099 25.1 9.5 19 584-602 64-82 (106)
377 PF06428 Sec2p: GDP/GTP exchan 29.3 4.6E+02 0.01 25.2 9.4 51 314-364 10-61 (100)
378 KOG3433 Protein involved in me 29.3 7.3E+02 0.016 26.5 11.4 51 576-626 93-143 (203)
379 PF10212 TTKRSYEDQ: Predicted 29.1 1.2E+03 0.025 28.8 14.8 97 303-400 418-514 (518)
380 PF05529 Bap31: B-cell recepto 28.9 3.1E+02 0.0067 28.5 9.1 18 583-600 123-140 (192)
381 PF05276 SH3BP5: SH3 domain-bi 28.9 8.2E+02 0.018 27.0 30.1 53 733-785 174-226 (239)
382 PRK03947 prefoldin subunit alp 28.4 5.8E+02 0.013 25.1 13.6 34 655-688 101-134 (140)
383 PF10805 DUF2730: Protein of u 28.2 4.2E+02 0.0091 25.4 9.0 49 560-608 45-95 (106)
384 TIGR03495 phage_LysB phage lys 28.1 6.4E+02 0.014 25.5 11.1 7 614-620 83-89 (135)
385 PF15556 Zwint: ZW10 interacto 27.7 8.2E+02 0.018 26.6 17.7 56 300-355 72-127 (252)
386 PF02403 Seryl_tRNA_N: Seryl-t 27.6 5.2E+02 0.011 24.2 10.9 65 383-447 25-92 (108)
387 PRK09859 multidrug efflux syst 27.1 2.8E+02 0.0062 31.9 9.2 31 372-402 136-166 (385)
388 PF04728 LPP: Lipoprotein leuc 26.7 4.3E+02 0.0093 23.0 8.1 28 566-593 5-32 (56)
389 PF05529 Bap31: B-cell recepto 26.5 4.7E+02 0.01 27.2 9.9 30 285-314 119-148 (192)
390 KOG0962 DNA repair protein RAD 26.3 1.8E+03 0.039 30.2 64.5 48 285-332 217-264 (1294)
391 PF06810 Phage_GP20: Phage min 26.3 4.6E+02 0.01 26.8 9.5 62 548-609 18-82 (155)
392 cd07651 F-BAR_PombeCdc15_like 26.1 8.4E+02 0.018 26.2 17.4 12 549-560 59-70 (236)
393 PF04949 Transcrip_act: Transc 25.9 7.5E+02 0.016 25.6 17.3 24 758-781 135-158 (159)
394 PF04880 NUDE_C: NUDE protein, 25.7 97 0.0021 32.3 4.5 15 608-622 33-47 (166)
395 COG3074 Uncharacterized protei 25.4 5.2E+02 0.011 23.5 10.5 49 552-600 20-68 (79)
396 PF03962 Mnd1: Mnd1 family; I 25.3 8.2E+02 0.018 25.8 13.3 23 382-404 105-127 (188)
397 PRK13729 conjugal transfer pil 25.1 2.5E+02 0.0054 33.8 8.2 40 583-622 81-120 (475)
398 cd07655 F-BAR_PACSIN The F-BAR 25.1 9.4E+02 0.02 26.4 15.5 34 677-710 169-202 (258)
399 TIGR02894 DNA_bind_RsfA transc 24.8 8E+02 0.017 25.6 10.7 76 342-417 56-155 (161)
400 PF04201 TPD52: Tumour protein 24.7 1.9E+02 0.0042 30.0 6.3 27 468-494 29-55 (162)
401 PF04645 DUF603: Protein of un 24.5 8.6E+02 0.019 25.7 13.5 24 641-664 138-161 (181)
402 KOG4657 Uncharacterized conser 24.3 9.9E+02 0.021 26.4 14.9 14 663-676 108-121 (246)
403 TIGR02680 conserved hypothetic 24.2 2E+03 0.043 29.9 65.9 41 773-813 923-963 (1353)
404 KOG1853 LIS1-interacting prote 24.0 1.1E+03 0.023 26.6 21.7 23 293-315 29-51 (333)
405 PF05546 She9_MDM33: She9 / Md 23.9 9.5E+02 0.021 26.1 14.8 48 571-618 32-79 (207)
406 COG3352 FlaC Putative archaeal 23.8 4.8E+02 0.01 27.0 8.8 65 561-625 69-134 (157)
407 PF03999 MAP65_ASE1: Microtubu 23.8 3.3E+02 0.0072 33.8 9.4 105 300-404 14-122 (619)
408 KOG4677 Golgi integral membran 23.8 1.4E+03 0.029 27.8 34.5 120 323-454 207-334 (554)
409 TIGR03752 conj_TIGR03752 integ 23.6 6.4E+02 0.014 30.5 11.1 44 565-608 60-103 (472)
410 cd07658 F-BAR_NOSTRIN The F-BA 23.1 9.9E+02 0.021 26.0 20.2 46 311-356 101-146 (239)
411 PF12001 DUF3496: Domain of un 23.0 5E+02 0.011 25.5 8.4 39 591-629 28-66 (111)
412 PF06548 Kinesin-related: Kine 22.9 1.4E+03 0.03 27.7 37.1 313 303-687 111-484 (488)
413 cd07678 F-BAR_FCHSD1 The F-BAR 22.9 1.1E+03 0.024 26.4 13.6 94 293-394 105-211 (263)
414 PRK12704 phosphodiesterase; Pr 22.6 1.5E+03 0.032 27.8 20.8 138 539-676 46-190 (520)
415 KOG2751 Beclin-like protein [S 22.6 1.4E+03 0.03 27.5 15.1 21 551-571 151-171 (447)
416 PF12761 End3: Actin cytoskele 22.4 9.6E+02 0.021 25.8 11.1 23 553-575 99-121 (195)
417 KOG0240 Kinesin (SMY1 subfamil 22.3 1.6E+03 0.034 28.0 20.5 14 472-485 345-358 (607)
418 KOG4807 F-actin binding protei 22.2 1.4E+03 0.029 27.3 29.7 54 370-423 338-392 (593)
419 KOG2391 Vacuolar sorting prote 22.1 4.6E+02 0.01 30.4 9.2 23 56-78 40-62 (365)
420 PRK09174 F0F1 ATP synthase sub 22.1 9.8E+02 0.021 25.6 13.5 90 611-706 82-172 (204)
421 cd07679 F-BAR_PACSIN2 The F-BA 22.1 1.1E+03 0.025 26.3 19.7 96 250-355 50-155 (258)
422 KOG4603 TBP-1 interacting prot 21.9 9.7E+02 0.021 25.4 14.1 66 387-452 79-146 (201)
423 TIGR02449 conserved hypothetic 21.9 5.8E+02 0.013 22.8 8.7 51 575-625 4-54 (65)
424 PF04100 Vps53_N: Vps53-like, 21.8 1E+03 0.023 27.8 12.4 36 623-662 74-109 (383)
425 PF09727 CortBP2: Cortactin-bi 21.5 1E+03 0.022 25.5 15.8 63 300-362 97-163 (192)
426 PRK09973 putative outer membra 21.4 3.5E+02 0.0076 25.4 6.7 44 642-685 25-68 (85)
427 KOG0992 Uncharacterized conser 21.4 1.6E+03 0.034 27.7 46.1 64 553-617 294-357 (613)
428 PRK11578 macrolide transporter 21.3 7.4E+02 0.016 28.3 11.0 9 330-338 96-104 (370)
429 PF05615 THOC7: Tho complex su 21.1 8E+02 0.017 24.2 11.4 44 302-345 71-114 (139)
430 PF11172 DUF2959: Protein of u 20.8 1.1E+03 0.023 25.5 20.4 110 280-399 24-145 (201)
431 KOG2391 Vacuolar sorting prote 20.8 1.4E+03 0.03 26.8 13.6 11 146-156 103-113 (365)
432 PF06428 Sec2p: GDP/GTP exchan 20.4 1.4E+02 0.003 28.6 4.1 50 640-689 21-71 (100)
433 PRK13428 F0F1 ATP synthase sub 20.2 1.5E+03 0.033 27.0 13.6 12 284-295 32-43 (445)
434 PF09755 DUF2046: Uncharacteri 20.1 1.4E+03 0.029 26.4 36.7 25 379-403 26-50 (310)
No 1
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=100.00 E-value=5.8e-80 Score=716.24 Aligned_cols=522 Identities=56% Similarity=0.721 Sum_probs=504.2
Q ss_pred CCCcccHHHHHHhcCCcccccccccchHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 256 TAPFESVKEVVSKFGGIVDWKAHRMQTVERRKYVEQELERSHEEMPEYRKRSEAAEVAKNQVLKELDQTKRLVEELKLNL 335 (910)
Q Consensus 256 ~aPf~SVK~AvslFGe~~~~K~~r~~~~ER~~~~e~EL~~~qeeL~k~Keqle~aE~~k~qal~ELe~aKr~ieeL~~kL 335 (910)
+|||+|||+|||+|||+++||+| ++++|+..++.||+++|++|++|++++..++.++.+|+.||++||++|++|+++|
T Consensus 1 ~apf~SVk~Avs~FG~~~~~k~~--~~~e~~~~~e~eL~~~qeel~~~k~~l~~~E~~k~~~l~ELe~akr~veel~~kL 78 (522)
T PF05701_consen 1 SAPFESVKEAVSLFGGSIDWKKH--QSLERVKEKETELEKAQEELAKLKEQLEAAEREKAQALSELESAKRTVEELKLKL 78 (522)
T ss_pred CCCChHHHHHHHHcCCccccccC--CchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999987 5559999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 336 ERAQTEEHQAKQDSELAKLRVEEMEQGIADDASVAARAQLEVAKARHVAAVSELKSVKDEVESLRKDYASLVTEKDIAVK 415 (910)
Q Consensus 336 E~a~~e~~~A~e~sE~ak~r~~ELEqgia~~~~~a~k~eLE~ar~q~a~~laEL~svKeELekLrqEl~~l~eeK~~A~k 415 (910)
++++.++.+|++++|++++|+++|++|+++..++.|+.+|++++.||+.++++|+++++||.+++++|++++++|+.|++
T Consensus 79 e~~~~~~~~a~~~~e~~k~r~~e~e~~~~~~~~~~~k~ele~~~~q~~~~~~eL~~~k~EL~~lr~e~~~~~~~k~~A~~ 158 (522)
T PF05701_consen 79 EKAQAEEKQAEEDSELAKFRAKELEQGIAEEASVAWKAELESAREQYASAVAELDSVKQELEKLRQELASALDAKNAALK 158 (522)
T ss_pred HHHHHHHHHHHHhhHHhHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHH
Q 002541 416 KAEEAISASKEVEKTVEELTIELIATKESLESAHAAHLEAEEQRIGAAMARDQDSHLWEKELKQAEEELQKLTQQILSAK 495 (910)
Q Consensus 416 ~AeEA~~aak~~eekveeLt~EL~~lKEsLe~a~aa~~eAEe~r~~v~la~eqd~~~~e~eL~qaEEEie~Lr~el~~a~ 495 (910)
+++++.++++.+.++|++|+.||.++|++|++++.+|.+++++++.+.+++++++..|+.+|.+++++++.|+.++..++
T Consensus 159 ~aeea~~~a~~~~~kve~L~~Ei~~lke~l~~~~~a~~eAeee~~~~~~~~~~~~~~~~~~leeae~~l~~L~~e~~~~k 238 (522)
T PF05701_consen 159 QAEEAVSAAEENEEKVEELSKEIIALKESLESAKLAHIEAEEERIEIAAEREQDAEEWEKELEEAEEELEELKEELEAAK 238 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccCCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 496 DLRSKLDTASALLLDLKAELSAYMESKLKEESNEEGHSNGELEEPERKTHTDIQAAVASAKKELEEVKLNIEKATAEVNC 575 (910)
Q Consensus 496 dLeakLeea~~~Le~Lk~ELa~~lE~kL~e~~~ei~~lq~~L~E~ek~~~~~l~esL~sakkELee~K~~Leka~eEl~s 575 (910)
+|+++|+.++..+..|+.||..+++.++.... ..+.....+...|.+++.||++++.+|++++.++++
T Consensus 239 ~Le~kL~~a~~~l~~Lq~El~~~~~~~l~~~~------------~~~~~~~~~~~~l~s~~~ELe~ak~~L~~~k~E~~~ 306 (522)
T PF05701_consen 239 DLESKLAEASAELESLQAELEAAKESKLEEEA------------EAKEKSSELQSSLASAKKELEEAKKELEKAKEEASS 306 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH------------HhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999997766431 123344667778999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Q 002541 576 LKVAATSLQSELEREKSALAAIRQREGMASVAVASLEAELDRTRSEIALVQMKEKEAREKTVELPKQLQVAAQEADQAKS 655 (910)
Q Consensus 576 L~~~vesLrsELek~K~ELeelKeke~~a~~eI~sL~eELer~ksELe~~kakeeeare~~~eL~~eLqqls~EaEeAKk 655 (910)
|+..+++|+.+|+++|.++..+++++..+...|.+|..+|.+++.+|+.+...+.+++..+.+|...|+++..|+++|+.
T Consensus 307 L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~~~k~~~~~l~~~Lqql~~Eae~Ak~ 386 (522)
T PF05701_consen 307 LRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEEKAKEAMSELPKALQQLSSEAEEAKK 386 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCCCCCccccchHhhH
Q 002541 656 LAQAAGEELHKAKEEAEQAKAGASTIESRLTAARKEIEAARASEKLALAAIKALQESESAQRTDDVDSPTGVTLSLEEYY 735 (910)
Q Consensus 656 eae~ae~EL~~lkeEaE~aKaeI~taE~rL~aA~KElEAAKAsEa~Ala~ikaL~e~~~~~~~~~~~~~~~Itls~eEy~ 735 (910)
.+..++.++.+++.+++++++.|.+++.||+++++|+++||++|++|+++|++|+++.++.+.+.++++++||||++||+
T Consensus 387 ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa~ke~eaaKasEa~Ala~ik~l~e~~~~~~~~~~~~~~~Vtls~eEy~ 466 (522)
T PF05701_consen 387 EAEEAKEEVEKAKEEAEQTKAAIKTAEERLEAALKEAEAAKASEALALAEIKALSESESSSRASDSESSSKVTLSLEEYE 466 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCCCCeeecHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999888777779999999999999
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 736 ELSKRAHEAEEQANMRVVAAISQIEVAKASELRSLERLEEVNKEIATRKEALKVAM 791 (910)
Q Consensus 736 ~L~~ka~Eaee~a~kKVa~A~aQvEeAkese~~~l~Kle~~~~Eie~~k~aleeAl 791 (910)
+|++|++++++++++||++|++||++||++++++++||+.++++|+++|.+|++|+
T Consensus 467 ~L~~ka~e~ee~a~kkva~A~aqve~ak~se~e~l~kle~~~~e~~~~k~al~~Al 522 (522)
T PF05701_consen 467 SLSKKAEEAEELAEKKVAAAMAQVEAAKASEKEILEKLEEAMKEIEERKEALEEAL 522 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999999985
No 2
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.80 E-value=7.8e-14 Score=178.79 Aligned_cols=403 Identities=20% Similarity=0.288 Sum_probs=243.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 370 AARAQLEVAKARHVAAVSELKSVKDEVESLRKDYASLVTEKDIAVKKAEEAISASKEVEKTVEELTIELIATKESLESAH 449 (910)
Q Consensus 370 a~k~eLE~ar~q~a~~laEL~svKeELekLrqEl~~l~eeK~~A~k~AeEA~~aak~~eekveeLt~EL~~lKEsLe~a~ 449 (910)
....++-..+.+|..+...++.+..+-..++.++..+...++.+.+.++++++..+.++.++.+|+..|..+.++++...
T Consensus 1467 ~~~tel~kl~~~lee~~e~~e~l~renk~l~~ei~dl~~~~~e~~k~v~elek~~r~le~e~~elQ~aLeElE~~le~eE 1546 (1930)
T KOG0161|consen 1467 QLSTELQKLKNALEELLEQLEELRRENKNLSQEIEDLEEQKDEGGKRVHELEKEKRRLEQEKEELQAALEELEAALEAEE 1546 (1930)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 34455556667788888889999999999999999999999999999999999999999999999999999999988877
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHH-HH--HHHHHH-------HHHHH
Q 002541 450 AAHLEAEEQRIGAAMARDQDSHLWEKELKQAEEELQKLTQQILSA-KDLRSKLDTAS-AL--LLDLKA-------ELSAY 518 (910)
Q Consensus 450 aa~~eAEe~r~~v~la~eqd~~~~e~eL~qaEEEie~Lr~el~~a-~dLeakLeea~-~~--Le~Lk~-------ELa~~ 518 (910)
.+.. +..+.+ .+....+++.|..++++++..+.++.+. .+|++.|++=. .+ ...+++ +|...
T Consensus 1547 ~~~l-----r~~~~~--~~~r~e~er~l~ek~Ee~E~~rk~~~~~i~~~q~~Le~E~r~k~e~~r~KKkle~di~elE~~ 1619 (1930)
T KOG0161|consen 1547 DKKL-----RLQLEL--QQLRSEIERRLQEKDEEIEELRKNLQRQLESLQAELEAETRSKSEALRSKKKLEGDINELEIQ 1619 (1930)
T ss_pred hHHH-----HHHHHH--HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhhhhcchHHHHHH
Confidence 6543 334444 3466778899999999999999988766 77777665321 11 122222 22222
Q ss_pred HHhhhhhhhccccCCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 519 MESKLKEESNEEGHSNGELEEPERKTHTDIQAAVASAKKELEEVKLNIEKATAEVNCLKVAATSLQSELEREKSALAAIR 598 (910)
Q Consensus 519 lE~kL~e~~~ei~~lq~~L~E~ek~~~~~l~esL~sakkELee~K~~Leka~eEl~sL~~~vesLrsELek~K~ELeelK 598 (910)
++. ....+..+++ ....++..+..+..++++.....+.+...+......+..|++|++.++..++.+-
T Consensus 1620 ld~----ank~~~d~~K--------~lkk~q~~~k~lq~~~e~~~~~~~e~~~q~~~aerr~~~l~~E~eeL~~~l~~~~ 1687 (1930)
T KOG0161|consen 1620 LDH----ANKANEDAQK--------QLKKLQAQLKELQRELEDAQRAREELLEQLAEAERRLAALQAELEELREKLEALE 1687 (1930)
T ss_pred HHH----HHHhhHHHHH--------HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 221 1000000111 1233344455556666666666666666666666666666666666666665553
Q ss_pred HHHhhhHHHHHhHHHHHH--------------HHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 599 QREGMASVAVASLEAELD--------------RTRSEIALVQMKEKEAREKTVELPKQLQVAAQEADQAKSLAQAAGEEL 664 (910)
Q Consensus 599 eke~~a~~eI~sL~eELe--------------r~ksELe~~kakeeeare~~~eL~~eLqqls~EaEeAKkeae~ae~EL 664 (910)
.-...+..+...+.+.++ ++..+|..+++..++............+++..++......+..-+...
T Consensus 1688 Rarr~aE~e~~E~~e~i~~~~~~~s~l~~~KrklE~~i~~l~~elee~~~~~~~~~Er~kka~~~a~~~~~el~~Eq~~~ 1767 (1930)
T KOG0161|consen 1688 RARRQAELELEELAERVNELNAQNSSLTAEKRKLEAEIAQLQSELEEEQSELRAAEERAKKAQADAAKLAEELRKEQETS 1767 (1930)
T ss_pred HHHHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 333333333333333222 233333333332222211111111111222222221111111111111
Q ss_pred HHHHHHHHHHH----------------------hcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCC
Q 002541 665 HKAKEEAEQAK----------------------AGASTIESRLTAARKEIEAARASEKLALAAIKALQESESAQRTDDVD 722 (910)
Q Consensus 665 ~~lkeEaE~aK----------------------aeI~taE~rL~aA~KElEAAKAsEa~Ala~ikaL~e~~~~~~~~~~~ 722 (910)
.++......+. ..|..++.|+..+..+++... ..-.+.++.+-..+ .
T Consensus 1768 ~~le~~k~~LE~~~kdLq~rL~e~E~~a~~~~k~~i~~Learir~LE~~l~~E~---~~~~e~~k~~rk~e--------r 1836 (1930)
T KOG0161|consen 1768 QKLERLKKSLERQVKDLQLRLDEAEQAALKGGKKQIAKLEARIRELESELEGEQ---RRKAEAIKGLRKKE--------R 1836 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHhHhh---hhhHHHhHHHHHHH--------H
Confidence 11111111111 223333333333333332211 11111122211110 1
Q ss_pred CCCccccchHhhHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchh
Q 002541 723 SPTGVTLSLEEYYELSKRAHEAEEQANMRVVAAISQIEVAKASELRSLERLEEVNKEIATRKEALKVAMEKAEKAKEGKL 802 (910)
Q Consensus 723 ~~~~Itls~eEy~~L~~ka~Eaee~a~kKVa~A~aQvEeAkese~~~l~Kle~~~~Eie~~k~aleeAleraE~Ae~aK~ 802 (910)
.-.-++++++|+.....++++..+..+.|+..+++|+++|++..+..+.+++..++ ++++|.+|++.|+
T Consensus 1837 ~vkEl~~q~eed~k~~~~~q~~~dkl~~k~~~~krQleeaE~~~~~~~~k~R~~q~-------ele~a~erad~~e---- 1905 (1930)
T KOG0161|consen 1837 RVKELQFQVEEDKKNIERLQDLVDKLQAKIKQYKRQLEEAEEEANQNLSKYRKLQR-------ELEEAEERADTAE---- 1905 (1930)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH----
Confidence 12348999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred hHHHHHHHHHHHHH
Q 002541 803 GIEQELRKWRAEHE 816 (910)
Q Consensus 803 avE~ELRkwR~e~e 816 (910)
++|.+||.++.
T Consensus 1906 ---~~~~~lr~k~r 1916 (1930)
T KOG0161|consen 1906 ---SELNKLRSKLR 1916 (1930)
T ss_pred ---HHHHHHHHHHH
Confidence 99999998744
No 3
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=99.69 E-value=5e-11 Score=140.28 Aligned_cols=432 Identities=26% Similarity=0.293 Sum_probs=276.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhhhh--hHHHHHHHHHHHHHHHHHHHH-----
Q 002541 316 QVLKELDQTKRLVEELKLNLERAQTEEHQAKQDSELAKLRVEEMEQGIADDA--SVAARAQLEVAKARHVAAVSE----- 388 (910)
Q Consensus 316 qal~ELe~aKr~ieeL~~kLE~a~~e~~~A~e~sE~ak~r~~ELEqgia~~~--~~a~k~eLE~ar~q~a~~laE----- 388 (910)
....+|..++..+..++..|..+..++.++..+.+.++--+.+|-..+.... ........+.++-|....-..
T Consensus 31 ~~e~eL~~~qeel~~~k~~l~~~E~~k~~~l~ELe~akr~veel~~kLe~~~~~~~~a~~~~e~~k~r~~e~e~~~~~~~ 110 (522)
T PF05701_consen 31 EKETELEKAQEELAKLKEQLEAAEREKAQALSELESAKRTVEELKLKLEKAQAEEKQAEEDSELAKFRAKELEQGIAEEA 110 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHhhhhcccc
Confidence 4555677777777777778888888888888888888888888766544311 112223333333222211111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 389 LKSVKDEVESLRKDYASLVTEKDIAVKKAE--------------EAISASKEVEKTVEELTIELIATKESLESAHAAHLE 454 (910)
Q Consensus 389 L~svKeELekLrqEl~~l~eeK~~A~k~Ae--------------EA~~aak~~eekveeLt~EL~~lKEsLe~a~aa~~e 454 (910)
-...+.+|+..+.+|..++.+.+.+-+... .+...+.........-...+..|...|..++..+..
T Consensus 111 ~~~~k~ele~~~~q~~~~~~eL~~~k~EL~~lr~e~~~~~~~k~~A~~~aeea~~~a~~~~~kve~L~~Ei~~lke~l~~ 190 (522)
T PF05701_consen 111 SVAWKAELESAREQYASAVAELDSVKQELEKLRQELASALDAKNAALKQAEEAVSAAEENEEKVEELSKEIIALKESLES 190 (522)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111445555555555555544444433222 222222222222222222223333333333222221
Q ss_pred HHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHH--HHHHHhhhhhhhcccc
Q 002541 455 AEEQRIGAAMARDQDSHLWEKELKQAEEELQKLTQQI-LSAKDLRSKLDTASALLLDLKAEL--SAYMESKLKEESNEEG 531 (910)
Q Consensus 455 AEe~r~~v~la~eqd~~~~e~eL~qaEEEie~Lr~el-~~a~dLeakLeea~~~Le~Lk~EL--a~~lE~kL~e~~~ei~ 531 (910)
+... -.+++++...+..+. .....|+..|..+...+..|+.++ +..++.+|..+..
T Consensus 191 ~~~a------------------~~eAeee~~~~~~~~~~~~~~~~~~leeae~~l~~L~~e~~~~k~Le~kL~~a~~--- 249 (522)
T PF05701_consen 191 AKLA------------------HIEAEEERIEIAAEREQDAEEWEKELEEAEEELEELKEELEAAKDLESKLAEASA--- 249 (522)
T ss_pred HHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 1110 011111111111110 122578888888899999998854 4445556554432
Q ss_pred CCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHH-HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 002541 532 HSNGELEEPERKTHTDIQAAVASAKKELEEVKL-NIE---KATAEVNCLKVAATSLQSELEREKSALAAIRQREGMASVA 607 (910)
Q Consensus 532 ~lq~~L~E~ek~~~~~l~esL~sakkELee~K~-~Le---ka~eEl~sL~~~vesLrsELek~K~ELeelKeke~~a~~e 607 (910)
.+..++.||..+.. .+. ..+.....++..+.+++.+|+..+..|..++.........
T Consensus 250 -------------------~l~~Lq~El~~~~~~~l~~~~~~~~~~~~~~~~l~s~~~ELe~ak~~L~~~k~E~~~L~~~ 310 (522)
T PF05701_consen 250 -------------------ELESLQAELEAAKESKLEEEAEAKEKSSELQSSLASAKKELEEAKKELEKAKEEASSLRAS 310 (522)
T ss_pred -------------------HHHHHHHHHHHHHHHHHhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23345555555444 222 2455667778889999999999999999999999999999
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhcHHH
Q 002541 608 VASLEAELDRTRSEIALVQMKEKEAREKTVELPKQLQVAAQEADQ-------AKSLAQAAGEELHKAKEEAEQAKAGAST 680 (910)
Q Consensus 608 I~sL~eELer~ksELe~~kakeeeare~~~eL~~eLqqls~EaEe-------AKkeae~ae~EL~~lkeEaE~aKaeI~t 680 (910)
+.+|..+|.+.+.++..++.++..+...+..|..+|..+..+++. ++.....+...|..+..|++.++.....
T Consensus 311 vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~~~k~~~~~l~~~Lqql~~Eae~Ak~ea~~ 390 (522)
T PF05701_consen 311 VESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEEKAKEAMSELPKALQQLSSEAEEAKKEAEE 390 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999855 4445567888999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCC----------CCCCCccccch-HhhHHHHHHHHHHHHHHh
Q 002541 681 IESRLTAARKEIEAARASEKLALAAIKALQESESAQRTDD----------VDSPTGVTLSL-EEYYELSKRAHEAEEQAN 749 (910)
Q Consensus 681 aE~rL~aA~KElEAAKAsEa~Ala~ikaL~e~~~~~~~~~----------~~~~~~Itls~-eEy~~L~~ka~Eaee~a~ 749 (910)
+..++..++.+++.+|++-.-+-..|.+.......++++. +++......+. ..+...+-...++..+.
T Consensus 391 ~~~E~~~~k~E~e~~ka~i~t~E~rL~aa~ke~eaaKasEa~Ala~ik~l~e~~~~~~~~~~~~~~~Vtls~eEy~~L~- 469 (522)
T PF05701_consen 391 AKEEVEKAKEEAEQTKAAIKTAEERLEAALKEAEAAKASEALALAEIKALSESESSSRASDSESSSKVTLSLEEYESLS- 469 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCCCCeeecHHHHHHHH-
Confidence 9999999999999999888888888887665444333221 11111111111 12223333455666655
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002541 750 MRVVAAISQIEVAKASELRSLERLEEVNKEIATRKEALKVAMEKAEKAK 798 (910)
Q Consensus 750 kKVa~A~aQvEeAkese~~~l~Kle~~~~Eie~~k~aleeAleraE~Ae 798 (910)
..|.+.+..+.+|+..++.+|+..|....+++.|++.+.
T Consensus 470 ----------~ka~e~ee~a~kkva~A~aqve~ak~se~e~l~kle~~~ 508 (522)
T PF05701_consen 470 ----------KKAEEAEELAEKKVAAAMAQVEAAKASEKEILEKLEEAM 508 (522)
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667788889999999999999999999999999999998
No 4
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=99.54 E-value=7.4e-16 Score=189.58 Aligned_cols=525 Identities=21% Similarity=0.281 Sum_probs=25.0
Q ss_pred HHHh-cCCcccccccc-cchHH-------HhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 265 VVSK-FGGIVDWKAHR-MQTVE-------RRKYVEQELERSHEEMPEYRKRSEAAEVAKNQVLKELDQTKRLVEELKLNL 335 (910)
Q Consensus 265 Avsl-FGe~~~~K~~r-~~~~E-------R~~~~e~EL~~~qeeL~k~Keqle~aE~~k~qal~ELe~aKr~ieeL~~kL 335 (910)
.+++ .+++.+||+.. ..... =+.-+...|..+++.+..++......+..+.++..|++.++..++......
T Consensus 293 qlsk~~~El~~~k~K~e~e~~~~~EelEeaKKkL~~~L~el~e~le~~~~~~~~LeK~k~rL~~EleDl~~eLe~~~~~~ 372 (859)
T PF01576_consen 293 QLSKLNAELEQWKKKYEEEAEQRTEELEEAKKKLERKLQELQEQLEEANAKVSSLEKTKKRLQGELEDLTSELEKAQAAA 372 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444 44777887432 11111 112345567788888888888888888888888877777776666655443
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhh--hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 336 ERAQTEEHQAKQDSELAKLRVEEMEQG--IADDASVAARAQLEVAKARHVAAVSELKSVKDEVESLRKDYASLVTEKDIA 413 (910)
Q Consensus 336 E~a~~e~~~A~e~sE~ak~r~~ELEqg--ia~~~~~a~k~eLE~ar~q~a~~laEL~svKeELekLrqEl~~l~eeK~~A 413 (910)
..+...+...-....-.+.++.++... .+......+..++-..+..|......+..+..+...|+.++.++.+..+.+
T Consensus 373 ~~LeKKqr~fDk~l~e~k~~~~~~~~e~d~~q~e~r~~~te~~~Lk~~lee~~e~~e~lere~k~L~~El~dl~~q~~~~ 452 (859)
T PF01576_consen 373 AELEKKQRKFDKQLAEWKAKVEELQAERDAAQREARELETELFKLKNELEELQEQLEELERENKQLQDELEDLTSQLDDA 452 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccchhhhhhh
Confidence 333332222222222222333333221 122223445666777777777788888888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 002541 414 VKKAEEAISASKEVEKTVEELTIELIATKESLESAHAAHLEAEEQRIGAAMARDQDSHLWEKELKQAEEELQKLTQQILS 493 (910)
Q Consensus 414 ~k~AeEA~~aak~~eekveeLt~EL~~lKEsLe~a~aa~~eAEe~r~~v~la~eqd~~~~e~eL~qaEEEie~Lr~el~~ 493 (910)
.+.++++.+..+.++..+.+|...|..+.+.|.....++. |+.+.| .+.+..++++|...+++++.++..+.+
T Consensus 453 ~k~v~eLek~kr~LE~e~~El~~~leE~E~~l~~~E~~~l-----Rl~~el--~~~r~e~er~l~eKeeE~E~~Rr~~qr 525 (859)
T PF01576_consen 453 GKSVHELEKAKRRLEQEKEELQEQLEEAEDALEAEEQKKL-----RLQVEL--QQLRQEIERELQEKEEEFEETRRNHQR 525 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHH--HHHHHHHHHHHHhhhhHHHHHHHhhHH
Confidence 9999999999999999999999999999999888777654 566666 446778899999999999999998875
Q ss_pred H-HHHHHHHHHHHHH---HHHHHHHHHHHHHhhhhhhhccccCCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 494 A-KDLRSKLDTASAL---LLDLKAELSAYMESKLKEESNEEGHSNGELEEPERKTHTDIQAAVASAKKELEEVKLNIEKA 569 (910)
Q Consensus 494 a-~dLeakLeea~~~---Le~Lk~ELa~~lE~kL~e~~~ei~~lq~~L~E~ek~~~~~l~esL~sakkELee~K~~Leka 569 (910)
. .+|++.|+.=... +...++. ||..+.+...-.........+..+ ....++..+..++.+|++.......+
T Consensus 526 ~l~~le~~LE~E~k~r~~~~r~kkK----LE~~l~eLe~~ld~~n~~~~e~~k-~~kk~q~qlkdlq~~lee~~~~~~~~ 600 (859)
T PF01576_consen 526 QLESLEAELEEERKERAEALREKKK----LESDLNELEIQLDHANRANEEAQK-QLKKLQAQLKDLQRELEEAQRAREEL 600 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhHhHHHHHH-HHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 5 7777777542111 1222221 121111110000000000001111 12233334445555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHH--------------HHHHHHHHHHHHHHHHh
Q 002541 570 TAEVNCLKVAATSLQSELEREKSALAAIRQREGMASVAVASLEAELDRT--------------RSEIALVQMKEKEAREK 635 (910)
Q Consensus 570 ~eEl~sL~~~vesLrsELek~K~ELeelKeke~~a~~eI~sL~eELer~--------------ksELe~~kakeeeare~ 635 (910)
...+..+...+..|..+|+.+...++.+......+......+.+++..+ ..++..+.....+....
T Consensus 601 ~~~~~~~e~r~~~l~~elee~~~~~~~a~r~rk~aE~el~e~~~~~~~l~~~~~~l~~~kr~le~~i~~l~~eleE~~~~ 680 (859)
T PF01576_consen 601 REQLAVSERRLRALQAELEELREALEQAERARKQAESELDELQERLNELTSQNSSLSEEKRKLEAEIQQLEEELEEEQSE 680 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555556666666666666655554433333333333333333332 22222222222221111
Q ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhh---h
Q 002541 636 TVELPKQLQVAAQEADQAKSLAQAAGEELHKAKEEAEQAKAGASTIESRLTAARKEIEA-ARASEKLALAAIKALQ---E 711 (910)
Q Consensus 636 ~~eL~~eLqqls~EaEeAKkeae~ae~EL~~lkeEaE~aKaeI~taE~rL~aA~KElEA-AKAsEa~Ala~ikaL~---e 711 (910)
...+.....++..++.....++..-+.....+...--.+...+.++..+|..+...... ++..-..--..|+-|. +
T Consensus 681 ~~~~~ek~kka~~~~~~l~~eL~~Eq~~~~~le~~k~~LE~q~keLq~rl~e~E~~~~~~~k~~i~kLE~ri~eLE~~Le 760 (859)
T PF01576_consen 681 AEAAEEKAKKAQAQAAQLAEELRQEQDHNQHLEKEKKALERQVKELQARLEEAEQSALKGGKKQIAKLEARIRELEEELE 760 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccHHHHHhHHHHHHHHHHH
Confidence 11111111111111111111111111111111111111122222333333322222111 0111111111111121 1
Q ss_pred hhhhcccCC-------CCCCCccccchHhhHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 712 SESAQRTDD-------VDSPTGVTLSLEEYYELSKRAHEAEEQANMRVVAAISQIEVAKASELRSLERLEEVNKEIATRK 784 (910)
Q Consensus 712 ~~~~~~~~~-------~~~~~~Itls~eEy~~L~~ka~Eaee~a~kKVa~A~aQvEeAkese~~~l~Kle~~~~Eie~~k 784 (910)
.+...+... .....-++|+++|......++++..+.++.||..+++|+++|++..++.+.+++.+++
T Consensus 761 ~E~r~~~~~~k~~rk~er~~kEl~~q~ee~~k~~~~~~d~~~kl~~k~k~~krq~eeaEe~~~~~~~k~Rk~q~------ 834 (859)
T PF01576_consen 761 SEQRRRAEAQKQLRKLERRVKELQFQVEEERKNAERLQDLVDKLQLKLKQLKRQLEEAEEEASRNLAKYRKLQR------ 834 (859)
T ss_dssp ----------------------------------------------------------------------SSSS------
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH------
Confidence 111111110 1244568999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhchhhHHHHHHHHHHHH
Q 002541 785 EALKVAMEKAEKAKEGKLGIEQELRKWRAEH 815 (910)
Q Consensus 785 ~aleeAleraE~Ae~aK~avE~ELRkwR~e~ 815 (910)
.|++|.+++++|+ ++|.+||.++
T Consensus 835 -elee~~e~~~~~e-------~~l~~lr~~~ 857 (859)
T PF01576_consen 835 -ELEEAEERAEAAE-------RELNKLRAKS 857 (859)
T ss_dssp -HHHHHTCCHHHHH-------HHHHHHHHHH
T ss_pred -HHHHHHHHHHHHH-------HHHHHHHhhc
Confidence 8999999999999 9999999763
No 5
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.41 E-value=6.4e-06 Score=104.44 Aligned_cols=67 Identities=21% Similarity=0.333 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHH
Q 002541 552 VASAKKELEEVKLNIEKATAEVNCLKVAATSLQSELEREKSALAAIRQREGMASVAVASLEAELDRT 618 (910)
Q Consensus 552 L~sakkELee~K~~Leka~eEl~sL~~~vesLrsELek~K~ELeelKeke~~a~~eI~sL~eELer~ 618 (910)
+..+..+++.+...+..+..++..+...+..++.++......+..+..........+..+..++..+
T Consensus 679 ~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 745 (1179)
T TIGR02168 679 IEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQL 745 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444443333333333333333333333333333333333333333333333333333333
No 6
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.41 E-value=8.1e-07 Score=115.72 Aligned_cols=268 Identities=20% Similarity=0.289 Sum_probs=136.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHH
Q 002541 546 TDIQAAVASAKKELEEVKLNIEKATAEVNCLKVAATSLQSELEREKSALAAIRQREGMASVAVASLEAELDRTRSEIALV 625 (910)
Q Consensus 546 ~~l~esL~sakkELee~K~~Leka~eEl~sL~~~vesLrsELek~K~ELeelKeke~~a~~eI~sL~eELer~ksELe~~ 625 (910)
..++.....++.|++.+...+.....-...+.........-|...|..++.+...+..+......+..++.++...++.+
T Consensus 1403 ~~Lek~k~~l~~el~d~~~d~~~~~~~~~~le~k~k~f~k~l~e~k~~~e~l~~Eld~aq~e~r~~~tel~kl~~~lee~ 1482 (1930)
T KOG0161|consen 1403 ASLEKAKNRLQQELEDLQLDLERSRAAVAALEKKQKRFEKLLAEWKKKLEKLQAELDAAQRELRQLSTELQKLKNALEEL 1482 (1930)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 33344444445555555555555544444444444444444444444444444444445555555555555555555444
Q ss_pred HHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHH-------------------------H
Q 002541 626 QMKEKEAREKTVELPKQLQVAAQEADQAKSLAQAAGEELHKAKEEAEQAKAGAS-------------------------T 680 (910)
Q Consensus 626 kakeeeare~~~eL~~eLqqls~EaEeAKkeae~ae~EL~~lkeEaE~aKaeI~-------------------------t 680 (910)
....+..+..-..+..++.++..-..++.+.+..++..+..+..+...++..+. .
T Consensus 1483 ~e~~e~l~renk~l~~ei~dl~~~~~e~~k~v~elek~~r~le~e~~elQ~aLeElE~~le~eE~~~lr~~~~~~~~r~e 1562 (1930)
T KOG0161|consen 1483 LEQLEELRRENKNLSQEIEDLEEQKDEGGKRVHELEKEKRRLEQEKEELQAALEELEAALEAEEDKKLRLQLELQQLRSE 1562 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 443333333333333444444444444433333333333333333333333222 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCCC-------CCccccchHhhHHHHHHHHHHHHHHhHHHH
Q 002541 681 IESRLTAARKEIEAARASEKLALAAIKALQESESAQRTDDVDS-------PTGVTLSLEEYYELSKRAHEAEEQANMRVV 753 (910)
Q Consensus 681 aE~rL~aA~KElEAAKAsEa~Ala~ikaL~e~~~~~~~~~~~~-------~~~Itls~eEy~~L~~ka~Eaee~a~kKVa 753 (910)
++.+|.....+++..+-.-...++.+.+..+.+..++...... -+.+.++++.-.....-++..-...+.-+.
T Consensus 1563 ~er~l~ek~Ee~E~~rk~~~~~i~~~q~~Le~E~r~k~e~~r~KKkle~di~elE~~ld~ank~~~d~~K~lkk~q~~~k 1642 (1930)
T KOG0161|consen 1563 IERRLQEKDEEIEELRKNLQRQLESLQAELEAETRSKSEALRSKKKLEGDINELEIQLDHANKANEDAQKQLKKLQAQLK 1642 (1930)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHhhHHHHHHHHhhHHHHH
Confidence 3455555556667777777777887777666555543322111 223444544444444444444444445555
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHH
Q 002541 754 AAISQIEVAKASELRSLERLEEVNKEIATRKEALKVAMEKAEKAKEGKLGIEQELRKWRA 813 (910)
Q Consensus 754 ~A~aQvEeAkese~~~l~Kle~~~~Eie~~k~aleeAleraE~Ae~aK~avE~ELRkwR~ 813 (910)
.+..+++.+..+..+++..+..+.+.+.....++++-....+.+++++.-+|.++--.+.
T Consensus 1643 ~lq~~~e~~~~~~~e~~~q~~~aerr~~~l~~E~eeL~~~l~~~~Rarr~aE~e~~E~~e 1702 (1930)
T KOG0161|consen 1643 ELQRELEDAQRAREELLEQLAEAERRLAALQAELEELREKLEALERARRQAELELEELAE 1702 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 566666677777777776666666656556666666666666666777777777664443
No 7
>PRK02224 chromosome segregation protein; Provisional
Probab=99.37 E-value=2.5e-06 Score=106.43 Aligned_cols=44 Identities=9% Similarity=0.032 Sum_probs=18.9
Q ss_pred hHhhHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 002541 731 LEEYYELSKRAHEAEEQANMRVVAAISQIEVAKASELRSLERLEEVNK 778 (910)
Q Consensus 731 ~eEy~~L~~ka~Eaee~a~kKVa~A~aQvEeAkese~~~l~Kle~~~~ 778 (910)
-+.|..+..+...+. ..+......++.++.........+..+..
T Consensus 645 ~~~~e~l~~~~~~~~----~~~~~l~~~l~~~~~~~~~l~~~i~~~~~ 688 (880)
T PRK02224 645 EARIEEAREDKERAE----EYLEQVEEKLDELREERDDLQAEIGAVEN 688 (880)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444554444443332 33344444444444444444444444333
No 8
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.36 E-value=7.5e-08 Score=122.12 Aligned_cols=61 Identities=28% Similarity=0.489 Sum_probs=50.8
Q ss_pred cchHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 280 MQTVERRKYVEQELERSHEEMPEYRKRSEAAEVAKNQVLKELDQTKRLVEELKLNLERAQTEEHQA 345 (910)
Q Consensus 280 ~~~~ER~~~~e~EL~~~qeeL~k~Keqle~aE~~k~qal~ELe~aKr~ieeL~~kLE~a~~e~~~A 345 (910)
+.|.+|+..+ .++.+ +..|+.++..+.....++...+.+.+..+.+|..+++.+...+..+
T Consensus 150 ~~~~~r~~~~-~~~~g----~~~~~~~~~~~~~~l~~~~~~l~el~~~~~~L~~q~~~l~~~~e~~ 210 (1164)
T TIGR02169 150 MSPVERRKII-DEIAG----VAEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKA 210 (1164)
T ss_pred CCHHHHHHHH-HHHhC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566788777 45777 8889999999999999999999999999999999998888887666
No 9
>PRK02224 chromosome segregation protein; Provisional
Probab=99.32 E-value=1.1e-05 Score=100.70 Aligned_cols=74 Identities=19% Similarity=0.309 Sum_probs=36.0
Q ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 002541 286 RKYVEQELERSHEEMPEYRKRSEAAEVAKNQVL---KELDQTKRLVEELKLNLERAQTEEHQAKQDSELAKLRVEEM 359 (910)
Q Consensus 286 ~~~~e~EL~~~qeeL~k~Keqle~aE~~k~qal---~ELe~aKr~ieeL~~kLE~a~~e~~~A~e~sE~ak~r~~EL 359 (910)
...++.++..++.++..++.++..+...+..+. .++......++.+...++.++.....+....+....++.++
T Consensus 208 l~~~~~~l~el~~~i~~~~~~~~~l~~~l~~l~~~~~el~~~~~~l~~l~~~~~~l~~~i~~~e~~~~~l~~~i~~~ 284 (880)
T PRK02224 208 LNGLESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELETLEAEIEDLRETIAETEREREELAEEVRDL 284 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566666666666666666666555554333 33333334444444444444444444433333333333333
No 10
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.31 E-value=2.4e-05 Score=99.35 Aligned_cols=9 Identities=33% Similarity=0.479 Sum_probs=3.2
Q ss_pred HhhHHHHHH
Q 002541 297 HEEMPEYRK 305 (910)
Q Consensus 297 qeeL~k~Ke 305 (910)
+.++..+..
T Consensus 252 ~~~~~~~~~ 260 (1179)
T TIGR02168 252 EEELEELTA 260 (1179)
T ss_pred HHHHHHHHH
Confidence 333333333
No 11
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=99.29 E-value=2.3e-07 Score=118.89 Aligned_cols=139 Identities=29% Similarity=0.409 Sum_probs=92.1
Q ss_pred cchHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 002541 280 MQTVERRKYVEQELERSHEEMPEYRKRSEAAEVAKNQVLKELDQTKRLVEELKLNLERAQTEEHQAKQDSELAKLRVEEM 359 (910)
Q Consensus 280 ~~~~ER~~~~e~EL~~~qeeL~k~Keqle~aE~~k~qal~ELe~aKr~ieeL~~kLE~a~~e~~~A~e~sE~ak~r~~EL 359 (910)
+.|.+|+..++ |..+ +.+|+.....++.....+..-|++...++.+|..+|+.+..+...| .++..+
T Consensus 152 ~kp~err~iiE-EaaG----v~~y~~r~~ea~~~L~~~~~nl~~~~~~~~el~~~l~~L~~q~~~a--------~~y~~l 218 (1163)
T COG1196 152 AKPEERRKLIE-EAAG----VSKYKERKEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKA--------ERYQEL 218 (1163)
T ss_pred CCHHHHHHHHH-HHhc----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHH
Confidence 46778888654 5888 8999999999999999999999999999999999999999999988 677777
Q ss_pred HhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 360 EQGIADDASVAARAQLEVAKARHVAAVSELKSVKDEVESLRKDYASLVTEKDIAVKKAEEAISASKEVEKTVEELTIEL 438 (910)
Q Consensus 360 Eqgia~~~~~a~k~eLE~ar~q~a~~laEL~svKeELekLrqEl~~l~eeK~~A~k~AeEA~~aak~~eekveeLt~EL 438 (910)
...+... +......+|.....+|..+.+++..++.++..+......+.+.+..+......+...+..++.++
T Consensus 219 ~~e~~~~-------~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~e~~~~~~~~~~~~ 290 (1163)
T COG1196 219 KAELREL-------ELALLLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEEL 290 (1163)
T ss_pred HHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6554432 12222223444444555555555555555555555444444444444444444444444443333
No 12
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=99.22 E-value=2.3e-05 Score=95.89 Aligned_cols=371 Identities=15% Similarity=0.215 Sum_probs=192.4
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Q 002541 291 QELERSHEEMPEYRKRSEAAEVAKNQVLKEL--------DQTKRLVEELKLNLERAQTEEHQAKQDSELAKLRVEEMEQG 362 (910)
Q Consensus 291 ~EL~~~qeeL~k~Keqle~aE~~k~qal~EL--------e~aKr~ieeL~~kLE~a~~e~~~A~e~sE~ak~r~~ELEqg 362 (910)
.+|..+|.+...++..++.+.....+...++ ++.+..-++...+|..++.+......+.+.+..-+..|+..
T Consensus 3 ~ql~~~q~E~e~L~~ele~~~~~l~~~~~~i~~fwspElkrer~~rkee~a~l~~~k~qlr~~q~e~q~~~~ei~~LqeE 82 (775)
T PF10174_consen 3 AQLERLQRENERLRRELERKQSKLGSSMNSIKTFWSPELKRERALRKEEAAELSRLKEQLRVTQEENQKAQEEIQALQEE 82 (775)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 4566666666666666666666655555544 34666667777777777777666655666666666666665
Q ss_pred hhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 363 IAD-DASVAARAQLEVAKARHVAAVSELKSVKDEVESLRKDYASLVTEKDIAVKKAEEAISASKEVEKTVEELTIELIAT 441 (910)
Q Consensus 363 ia~-~~~~a~k~eLE~ar~q~a~~laEL~svKeELekLrqEl~~l~eeK~~A~k~AeEA~~aak~~eekveeLt~EL~~l 441 (910)
+.. .....++.+++.+...+...-. |+.+..++..|+.+++.+..+-......++++......+.........+|..|
T Consensus 83 Lr~q~e~~rL~~~~e~~~~e~e~l~~-ld~~~~q~~rl~~E~er~~~El~~lr~~lE~~q~~~e~~q~~l~~~~eei~kL 161 (775)
T PF10174_consen 83 LRAQRELNRLQQELEKAQYEFESLQE-LDKAQEQFERLQAERERLQRELERLRKTLEELQLRIETQQQTLDKADEEIEKL 161 (775)
T ss_pred HHHhhHHHHHHHHhhhcccccchhhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 521 1123466677777766665555 88888888888888887777777777777777777777777777777777777
Q ss_pred HHHHHHH-------HHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhH----------HHHHHHHHHH
Q 002541 442 KESLESA-------HAAHLEAEEQRIGAAMARDQDSHLWEKELKQAEEELQKLTQQILSA----------KDLRSKLDTA 504 (910)
Q Consensus 442 KEsLe~a-------~aa~~eAEe~r~~v~la~eqd~~~~e~eL~qaEEEie~Lr~el~~a----------~dLeakLeea 504 (910)
.+.|+.. .... .+-. ++ ...+..+..++..|...+.+...+++++... ..|+.-++..
T Consensus 162 ~e~L~~~g~~~~~~~~~~-~~~~-~~---~~~e~~~~~le~lle~~e~~~~~~r~~l~~~~~~~~~~a~t~alq~~ie~K 236 (775)
T PF10174_consen 162 QEMLQSKGLSAEAEEEDN-EALR-RI---REAEARIMRLESLLERKEKEHMEAREQLHRRLQMERDDAETEALQTVIEEK 236 (775)
T ss_pred HHHHhhcCCcccchhhhh-HHHH-HH---HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhcCCCchhHHHHHHHHHHH
Confidence 7766421 0000 0000 00 0001112223333333344433332222221 3456666666
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhccccCCCCCCc--hhhhh----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 505 SALLLDLKAELSAYMESKLKEESNEEGHSNGELE--EPERK----THTDIQAAVASAKKELEEVKLNIEKATAEVNCLKV 578 (910)
Q Consensus 505 ~~~Le~Lk~ELa~~lE~kL~e~~~ei~~lq~~L~--E~ek~----~~~~l~esL~sakkELee~K~~Leka~eEl~sL~~ 578 (910)
+..+..|.+-|-. ++. +|..|+..+. ...+. ....-.......+..++.++..|.....|+..++.
T Consensus 237 d~ki~~lEr~l~~-le~-------Ei~~L~~~~~~~~~~r~~~~k~le~~~s~~~~mK~k~d~~~~eL~rk~~E~~~~qt 308 (775)
T PF10174_consen 237 DTKIASLERMLRD-LED-------EIYRLRSRGELSEADRDRLDKQLEVYKSHSLAMKSKMDRLKLELSRKKSELEALQT 308 (775)
T ss_pred HHHHHHHHHHHHH-HHH-------HHHHHHhcccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6555555432222 111 1111111110 00000 00000111122333456666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHH
Q 002541 579 AATSLQSELEREKSALAAIRQREGMASVAVASLEAELDRTRSEIALVQMKEKEAREKTVELPKQLQVAAQEADQAKSLAQ 658 (910)
Q Consensus 579 ~vesLrsELek~K~ELeelKeke~~a~~eI~sL~eELer~ksELe~~kakeeeare~~~eL~~eLqqls~EaEeAKkeae 658 (910)
.+..+.......+.-++.++..+.........|..++..++.+|+.......+....+..+..++..+..|+.+.+-...
T Consensus 309 ~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d 388 (775)
T PF10174_consen 309 RLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLD 388 (775)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66655555555555555555555555555555555555555555555444444444444444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHH
Q 002541 659 AAGEELHKAKEEAEQAK 675 (910)
Q Consensus 659 ~ae~EL~~lkeEaE~aK 675 (910)
....++..+...++.+.
T Consensus 389 ~~e~ki~~Lq~kie~Le 405 (775)
T PF10174_consen 389 KKERKINVLQKKIENLE 405 (775)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444444444333
No 13
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=99.21 E-value=1.8e-05 Score=96.93 Aligned_cols=202 Identities=20% Similarity=0.253 Sum_probs=110.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh--hhhh
Q 002541 289 VEQELERSHEEMPEYRKRSEAAEVAKNQVLKELDQTKRLVEELKLNLERAQTEEHQAKQDSELAKLRVEEMEQG--IADD 366 (910)
Q Consensus 289 ~e~EL~~~qeeL~k~Keqle~aE~~k~qal~ELe~aKr~ieeL~~kLE~a~~e~~~A~e~sE~ak~r~~ELEqg--ia~~ 366 (910)
-..+|..++.++.........+......+..+| ++.+.+..|...++.++.+...... .+.+...+..|... -...
T Consensus 51 e~a~l~~~k~qlr~~q~e~q~~~~ei~~LqeEL-r~q~e~~rL~~~~e~~~~e~e~l~~-ld~~~~q~~rl~~E~er~~~ 128 (775)
T PF10174_consen 51 EAAELSRLKEQLRVTQEENQKAQEEIQALQEEL-RAQRELNRLQQELEKAQYEFESLQE-LDKAQEQFERLQAERERLQR 128 (775)
T ss_pred HHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHH-HHhhHHHHHHHHhhhcccccchhhh-hhhHHHHHHHHHHHHHHHHH
Confidence 345577777777777777777777777888888 8888888787777777766554444 55555555555321 1111
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 367 ASVAARAQLEVAKARHVAAVSELKSVKDEVESLRKDYA------SLVTEKDIAVKKAEEAISASKEVEKTVEELTIELIA 440 (910)
Q Consensus 367 ~~~a~k~eLE~ar~q~a~~laEL~svKeELekLrqEl~------~l~eeK~~A~k~AeEA~~aak~~eekveeLt~EL~~ 440 (910)
....++..|+-+..+....=.+|+.+-.+|.+|...|. .....-+.+..++.++......++..++..-.+...
T Consensus 129 El~~lr~~lE~~q~~~e~~q~~l~~~~eei~kL~e~L~~~g~~~~~~~~~~~~~~~~~~~e~~~~~le~lle~~e~~~~~ 208 (775)
T PF10174_consen 129 ELERLRKTLEELQLRIETQQQTLDKADEEIEKLQEMLQSKGLSAEAEEEDNEALRRIREAEARIMRLESLLERKEKEHME 208 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 22334555555555666666666666666666666553 122223344455555555555555555555555555
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHhh-hhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 002541 441 TKESLESAHA-AHLEAEEQRIGAAM-ARDQDSHLWEKELKQAEEELQKLTQQIL 492 (910)
Q Consensus 441 lKEsLe~a~a-a~~eAEe~r~~v~l-a~eqd~~~~e~eL~qaEEEie~Lr~el~ 492 (910)
+++.+..... ....+.-..+...+ ..+-....+++-|..++.+|..|+..+.
T Consensus 209 ~r~~l~~~~~~~~~~a~t~alq~~ie~Kd~ki~~lEr~l~~le~Ei~~L~~~~~ 262 (775)
T PF10174_consen 209 AREQLHRRLQMERDDAETEALQTVIEEKDTKIASLERMLRDLEDEIYRLRSRGE 262 (775)
T ss_pred hhHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 5444433111 00000000001000 0111234566777777777777766544
No 14
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.15 E-value=0.00013 Score=93.13 Aligned_cols=38 Identities=13% Similarity=0.256 Sum_probs=14.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 299 EMPEYRKRSEAAEVAKNQVLKELDQTKRLVEELKLNLE 336 (910)
Q Consensus 299 eL~k~Keqle~aE~~k~qal~ELe~aKr~ieeL~~kLE 336 (910)
++..++.++...+........++...+..+..+...++
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 332 (1164)
T TIGR02169 295 KIGELEAEIASLERSIAEKERELEDAEERLAKLEAEID 332 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333
No 15
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.05 E-value=0.00043 Score=90.43 Aligned_cols=67 Identities=22% Similarity=0.192 Sum_probs=29.7
Q ss_pred HHHhHHHHHHHHhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHH
Q 002541 746 EQANMRVVAAISQIEVAKASELRSLERLEEV--NKEIATRKEALKVAMEKAEKAKEGKLGIEQELRKWRAE 814 (910)
Q Consensus 746 e~a~kKVa~A~aQvEeAkese~~~l~Kle~~--~~Eie~~k~aleeAleraE~Ae~aK~avE~ELRkwR~e 814 (910)
+..+..+......+......+..+..-+... ..++...+..+..- ..+.++.....+..+++.|+.+
T Consensus 994 ~~l~~~i~~l~kel~~~~~~kr~l~dnL~~~~~~~~l~el~~eI~~l--~~~~~~~~~~~~~~e~~~l~~~ 1062 (1311)
T TIGR00606 994 EKINEDMRLMRQDIDTQKIQERWLQDNLTLRKRENELKEVEEELKQH--LKEMGQMQVLQMKQEHQKLEEN 1062 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhhccHHHHHHHHHHHHHH
Confidence 3344445555555555544444444444444 44444433333322 2233334444455555555543
No 16
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.91 E-value=0.0012 Score=86.28 Aligned_cols=138 Identities=10% Similarity=0.136 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 002541 552 VASAKKELEEVKLNIEKATAEVNCLKVAATSLQSELEREKSALAAIRQREGMASVAVASLEAELDRTRSEIALVQMKEKE 631 (910)
Q Consensus 552 L~sakkELee~K~~Leka~eEl~sL~~~vesLrsELek~K~ELeelKeke~~a~~eI~sL~eELer~ksELe~~kakeee 631 (910)
...+..+|++++..+.....++..+...+..|..++.....++..++......... +..+++..+..+..+..--..
T Consensus 883 r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 959 (1311)
T TIGR00606 883 RQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKK---AQDKVNDIKEKVKNIHGYMKD 959 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 34455555556666666666666666666666666666666665555444433322 223333333333222222222
Q ss_pred HHHhh-hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHH
Q 002541 632 AREKT-VELPKQLQVAAQEADQAKSLAQAAGEELHKAKEEAEQAKAGASTIESRLTAARKEI 692 (910)
Q Consensus 632 are~~-~eL~~eLqqls~EaEeAKkeae~ae~EL~~lkeEaE~aKaeI~taE~rL~aA~KEl 692 (910)
+.... .+.+..|.++..++..+...+..++.++..+..++..++..+......-......+
T Consensus 960 i~~y~~~~~~~qL~~~e~el~~~~~~ie~le~e~~~l~~~i~~l~kel~~~~~~kr~l~dnL 1021 (1311)
T TIGR00606 960 IENKIQDGKDDYLKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNL 1021 (1311)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22211 13455566666666666666666666666666666666666665555554444444
No 17
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.91 E-value=0.0012 Score=85.60 Aligned_cols=57 Identities=21% Similarity=0.279 Sum_probs=31.8
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 288 YVEQELERSHEEMPEYRKRSEAAEVAKNQVLKELDQTKRLVEELKLNLERAQTEEHQ 344 (910)
Q Consensus 288 ~~e~EL~~~qeeL~k~Keqle~aE~~k~qal~ELe~aKr~ieeL~~kLE~a~~e~~~ 344 (910)
.+..++....+++..++.++.........+..++-..+..+.++..++..+......
T Consensus 257 ~~~~~~~~~~~~i~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~ 313 (1163)
T COG1196 257 ELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEE 313 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355556666666666666666666655555555555555555555555444444333
No 18
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.89 E-value=0.00094 Score=83.10 Aligned_cols=87 Identities=20% Similarity=0.262 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 370 AARAQLEVAKARHVAAVSELKSVKDEVESLRKDYASLVTEKDIAVKKAEEAISASKEVEKTVEELTIELIATKESLESAH 449 (910)
Q Consensus 370 a~k~eLE~ar~q~a~~laEL~svKeELekLrqEl~~l~eeK~~A~k~AeEA~~aak~~eekveeLt~EL~~lKEsLe~a~ 449 (910)
..+.+++..+....-....+..++.+++-.+-+|..+......+.++.+++...+........+...+|..++..|.+.+
T Consensus 476 ~~~~e~~~~ekel~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k 555 (1293)
T KOG0996|consen 476 GIREEIEKLEKELMPLLKQVNEARSELDVAESELDILLSRHETGLKKVEELKGKLLASSESLKEKKTELDDLKEELPSLK 555 (1293)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 34555555566666677777788888888888888888888888888888888888777777777777777777777765
Q ss_pred HHHHHHH
Q 002541 450 AAHLEAE 456 (910)
Q Consensus 450 aa~~eAE 456 (910)
....+++
T Consensus 556 ~e~~~~~ 562 (1293)
T KOG0996|consen 556 QELKEKE 562 (1293)
T ss_pred HHHHHHH
Confidence 5444443
No 19
>PRK03918 chromosome segregation protein; Provisional
Probab=98.79 E-value=0.002 Score=80.65 Aligned_cols=43 Identities=23% Similarity=0.240 Sum_probs=20.5
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 293 LERSHEEMPEYRKRSEAAEVAKNQVLKELDQTKRLVEELKLNL 335 (910)
Q Consensus 293 L~~~qeeL~k~Keqle~aE~~k~qal~ELe~aKr~ieeL~~kL 335 (910)
+..+++.+..++.++............++...+..+..+...|
T Consensus 188 l~~i~~~l~~l~~~~~~l~~ei~~l~~e~~~l~~~~~~~~~~l 230 (880)
T PRK03918 188 TENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEV 230 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555555555544444444444444433
No 20
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=98.69 E-value=0.0055 Score=80.18 Aligned_cols=256 Identities=17% Similarity=0.189 Sum_probs=120.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hhHHHHHhHHHHHHHHHHHHHHHHH
Q 002541 552 VASAKKELEEVKLNIEKATAEVNCLKVAATSLQSELEREKSALAAIRQREG----MASVAVASLEAELDRTRSEIALVQM 627 (910)
Q Consensus 552 L~sakkELee~K~~Leka~eEl~sL~~~vesLrsELek~K~ELeelKeke~----~a~~eI~sL~eELer~ksELe~~ka 627 (910)
|.....++..++..|..+..++..++..+.++..=|..++..|+.++.... ....++-+|+.++..+..++..+..
T Consensus 907 Lr~~~eq~~~l~~~L~~a~s~i~~yqe~~~s~eqsl~~~ks~lde~~~~~ea~ie~~~~k~tslE~~ls~L~~~~~~l~~ 986 (1822)
T KOG4674|consen 907 LRKELEEITDLKEELTDALSQIREYQEEYSSLEQSLESVKSELDETRLELEAKIESLHKKITSLEEELSELEKEIENLRE 986 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444457777788888888887777777777777777777763222 2223344444444444444444432
Q ss_pred HHH----HHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHH-------HHHHHHHHHHH
Q 002541 628 KEK----EAREKTVELPKQLQVAAQEADQAKSLAQAAGEELHKAKEEAEQAKAGASTIESRL-------TAARKEIEAAR 696 (910)
Q Consensus 628 kee----eare~~~eL~~eLqqls~EaEeAKkeae~ae~EL~~lkeEaE~aKaeI~taE~rL-------~aA~KElEAAK 696 (910)
... .-.....++..++..+..|...+...+..+...+..++.........+..+...+ .+....+-..+
T Consensus 987 e~~~~~k~~e~~~~~~~~e~~sl~ne~~~~~~~~s~~~~~~~~~k~dl~~~~~~~~~a~~~Ye~el~~ha~~~q~l~kl~ 1066 (1822)
T KOG4674|consen 987 ELELSTKGKEDKLLDLSREISSLQNELKSLLKAASQANEQIEDLQNDLKTETEQLRKAQSKYESELVQHADLTQKLIKLR 1066 (1822)
T ss_pred HHhccccchhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 211 1122334556666666666666666666665555555544443332222222222 23333334444
Q ss_pred HHHHHHHHHHHHhhhhhhhcccCCCCCCCccccc----hHhhHHHHHHHHHHHH---HHhHHHHHHHHhHHHHHHHHHHH
Q 002541 697 ASEKLALAAIKALQESESAQRTDDVDSPTGVTLS----LEEYYELSKRAHEAEE---QANMRVVAAISQIEVAKASELRS 769 (910)
Q Consensus 697 AsEa~Ala~ikaL~e~~~~~~~~~~~~~~~Itls----~eEy~~L~~ka~Eaee---~a~kKVa~A~aQvEeAkese~~~ 769 (910)
..-+.+-+++..|-..-......-+.....+-.. -.|-..+..+...++. +.+-.|...-.++-+.+-+ -.
T Consensus 1067 ee~~~~~~e~~~Lk~~~~~~~~~l~e~~~~w~E~~~~Leqe~~~~~~~~~~L~~qNslLh~qie~~s~~~~~~n~S--~~ 1144 (1822)
T KOG4674|consen 1067 EEFAKCNDELLKLKKSRESRHALLSEQERDWSEKEDALEQEVNELKKRIESLEKQNSLLHDQFEELSQQSAVSNLS--AM 1144 (1822)
T ss_pred HHHHHHHHHHHHHHhhHHHHHhHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccc--cc
Confidence 4444444444444322222111001111111000 0011111222222221 1112222221111110000 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHH
Q 002541 770 LERLEEVNKEIATRKEALKVAMEKAEKAKEGKLGIEQELRKWRAEHE 816 (910)
Q Consensus 770 l~Kle~~~~Eie~~k~aleeAleraE~Ae~aK~avE~ELRkwR~e~e 816 (910)
...+..+..=|--.|.+.+.+..+.+.+. .+..+++.++.
T Consensus 1145 ~~g~sdL~~iv~~LR~Ekei~~tk~~~lk-------~e~~~L~qq~~ 1184 (1822)
T KOG4674|consen 1145 LLGLSDLQNIVSFLRKEKEIAETKLDTLK-------RENARLKQQVA 1184 (1822)
T ss_pred ccchHHHHHHHHHHHhHHHHHhhhHHHHH-------HHHHHHHHHHH
Confidence 11144556666667778889999999998 89999998877
No 21
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=98.64 E-value=5.1e-09 Score=129.75 Aligned_cols=260 Identities=18% Similarity=0.217 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 002541 551 AVASAKKELEEVKLNIEKATAEVNCLKVAATSLQSELEREKSALAAIRQREGMASVAVASLEAELDRTRSEIALVQMKEK 630 (910)
Q Consensus 551 sL~sakkELee~K~~Leka~eEl~sL~~~vesLrsELek~K~ELeelKeke~~a~~eI~sL~eELer~ksELe~~kakee 630 (910)
.....-+.|.+.+..+.....+...++.....+..++..++..++.+......+......|..+|..+...+........
T Consensus 378 Kqr~fDk~l~e~k~~~~~~~~e~d~~q~e~r~~~te~~~Lk~~lee~~e~~e~lere~k~L~~El~dl~~q~~~~~k~v~ 457 (859)
T PF01576_consen 378 KQRKFDKQLAEWKAKVEELQAERDAAQREARELETELFKLKNELEELQEQLEELERENKQLQDELEDLTSQLDDAGKSVH 457 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhccchH
Confidence 33344455555666666666666666666666667777777777777666666666666666666666555544322222
Q ss_pred HHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002541 631 EAREKTVELPKQLQVAAQEADQAKSLAQAAGEELHKAKEEAEQAKAGASTIESRLTAARKEIEAARASEKLALAAIKALQ 710 (910)
Q Consensus 631 eare~~~eL~~eLqqls~EaEeAKkeae~ae~EL~~lkeEaE~aKaeI~taE~rL~aA~KElEAAKAsEa~Ala~ikaL~ 710 (910)
+.....-.|..++..+...++++...+.........+.-++.++|..+ +.+|..-..+++..|-.=...|..|.+-.
T Consensus 458 eLek~kr~LE~e~~El~~~leE~E~~l~~~E~~~lRl~~el~~~r~e~---er~l~eKeeE~E~~Rr~~qr~l~~le~~L 534 (859)
T PF01576_consen 458 ELEKAKRRLEQEKEELQEQLEEAEDALEAEEQKKLRLQVELQQLRQEI---ERELQEKEEEFEETRRNHQRQLESLEAEL 534 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhhhHHHHHHHhhHHHHHHHHhHH
Confidence 222222233334444444444444444445555555555555555443 34666666677777777777888888855
Q ss_pred hhhhhcccCC-------CCCCCccccchHhhHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 711 ESESAQRTDD-------VDSPTGVTLSLEEYYELSKRAHEAEEQANMRVVAAISQIEVAKASELRSLERLEEVNKEIATR 783 (910)
Q Consensus 711 e~~~~~~~~~-------~~~~~~Itls~eEy~~L~~ka~Eaee~a~kKVa~A~aQvEeAkese~~~l~Kle~~~~Eie~~ 783 (910)
+.+...+... ...-+.+.++++........+...-......+..+..+++.+......+...+..+.+.+...
T Consensus 535 E~E~k~r~~~~r~kkKLE~~l~eLe~~ld~~n~~~~e~~k~~kk~q~qlkdlq~~lee~~~~~~~~~~~~~~~e~r~~~l 614 (859)
T PF01576_consen 535 EEERKERAEALREKKKLESDLNELEIQLDHANRANEEAQKQLKKLQAQLKDLQRELEEAQRAREELREQLAVSERRLRAL 614 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5544443221 112233555555555444444444455666677777777777777776666666666666666
Q ss_pred HHHHHHHHHHHHHHhhchhhHHHHHHHHHH
Q 002541 784 KEALKVAMEKAEKAKEGKLGIEQELRKWRA 813 (910)
Q Consensus 784 k~aleeAleraE~Ae~aK~avE~ELRkwR~ 813 (910)
...++++....+.|..++..+|.+|.-...
T Consensus 615 ~~elee~~~~~~~a~r~rk~aE~el~e~~~ 644 (859)
T PF01576_consen 615 QAELEELREALEQAERARKQAESELDELQE 644 (859)
T ss_dssp ------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777777777777788888877754443
No 22
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.62 E-value=0.0029 Score=74.76 Aligned_cols=102 Identities=21% Similarity=0.254 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHH
Q 002541 570 TAEVNCLKVAATSLQSELEREKSALAAIRQREGMASVAVASLEAELDRTRSEIALVQMKEKEAREKTVELPKQLQVAAQE 649 (910)
Q Consensus 570 ~eEl~sL~~~vesLrsELek~K~ELeelKeke~~a~~eI~sL~eELer~ksELe~~kakeeeare~~~eL~~eLqqls~E 649 (910)
..+...++..++..+.++.+++.++..+.+-+..-..+-..|..+|.+.+ .+. ...|.....+
T Consensus 356 ~qEk~~l~~~~e~~k~~ie~L~~el~~~e~~lqEer~E~qkL~~ql~ke~-----------D~n------~vqlsE~~re 418 (546)
T PF07888_consen 356 AQEKQALQHSAEADKDEIEKLSRELQMLEEHLQEERMERQKLEKQLGKEK-----------DCN------RVQLSENRRE 418 (546)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----------hhh------HHHHHHHHHH
Confidence 33444555566666777777777777776666666666666666664322 111 1255555666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHH
Q 002541 650 ADQAKSLAQAAGEELHKAKEEAEQAKAGASTIESRLTAA 688 (910)
Q Consensus 650 aEeAKkeae~ae~EL~~lkeEaE~aKaeI~taE~rL~aA 688 (910)
+.+.+..+..++.|-..+..|...+..-|..++.||..+
T Consensus 419 l~Elks~lrv~qkEKEql~~EkQeL~~yi~~Le~r~~~~ 457 (546)
T PF07888_consen 419 LQELKSSLRVAQKEKEQLQEEKQELLEYIERLEQRLDKV 457 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 666666666666666677777777777777777777665
No 23
>PRK03918 chromosome segregation protein; Provisional
Probab=98.60 E-value=0.0063 Score=76.26 Aligned_cols=22 Identities=27% Similarity=0.365 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 002541 552 VASAKKELEEVKLNIEKATAEV 573 (910)
Q Consensus 552 L~sakkELee~K~~Leka~eEl 573 (910)
+..+..++..++..+..+..++
T Consensus 461 i~~l~~~~~~l~~~~~~l~~~~ 482 (880)
T PRK03918 461 LKRIEKELKEIEEKERKLRKEL 482 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444333333333
No 24
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=98.60 E-value=0.0091 Score=77.73 Aligned_cols=227 Identities=18% Similarity=0.242 Sum_probs=105.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHH-HH
Q 002541 554 SAKKELEEVKLNIEKATAEVNCLKVAATSLQSELEREKSALAAIRQREGMASVAVASLEAELDRTRSEIALVQMKEK-EA 632 (910)
Q Consensus 554 sakkELee~K~~Leka~eEl~sL~~~vesLrsELek~K~ELeelKeke~~a~~eI~sL~eELer~ksELe~~kakee-ea 632 (910)
.++.+++.+...|.........+...+......+...+.++..++..+..+...+..|..+...++.++........ .+
T Consensus 604 ~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 683 (1201)
T PF12128_consen 604 ELRERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIEEAKEERKEQI 683 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666666666666666666666666666666666666666666666666666666666666555443321 22
Q ss_pred HHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002541 633 REKTVELPKQLQVAAQEADQAKSLAQAAGEELHKAKEEAEQAK-AGASTIESRLTAARKEIEAARASEKLALAAIKALQE 711 (910)
Q Consensus 633 re~~~eL~~eLqqls~EaEeAKkeae~ae~EL~~lkeEaE~aK-aeI~taE~rL~aA~KElEAAKAsEa~Ala~ikaL~e 711 (910)
......+..++.++..+.+....... .....+..+..... .........+.....++.+.++.-..-+..|+.-..
T Consensus 684 ~~~l~~l~~~l~~~~~e~~~~~~~~~---~~~~e~~~e~~~~~~~~~~~~d~~i~~i~~~i~~~~~~~~~~~~~le~~~~ 760 (1201)
T PF12128_consen 684 EEQLNELEEELKQLKQELEELLEELK---EQLKELRNELKAQWQELEAELDEQIEQIKQEIAAAKQEAKEQLKELEQQYN 760 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444433333221 22222221211111 122334444555555555555544445555555443
Q ss_pred hhhhcccCCCCCCCccccchHhhHH----HHHHHHHHHHHHhHHHHHHHHhHHHHHHH-------HHHHHHHHHHHHHHH
Q 002541 712 SESAQRTDDVDSPTGVTLSLEEYYE----LSKRAHEAEEQANMRVVAAISQIEVAKAS-------ELRSLERLEEVNKEI 780 (910)
Q Consensus 712 ~~~~~~~~~~~~~~~Itls~eEy~~----L~~ka~Eaee~a~kKVa~A~aQvEeAkes-------e~~~l~Kle~~~~Ei 780 (910)
.+-.+...+ +. .+..|.. |...++.. +.-..+|..|..|+..-=.. ......++..+..++
T Consensus 761 ~eL~~~GvD---~~----~I~~l~~~i~~L~~~l~~i-e~~r~~V~eY~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 832 (1201)
T PF12128_consen 761 QELAGKGVD---PE----RIQQLKQEIEQLEKELKRI-EERRAEVIEYEDWLQEEWDKVDELREEKPELEEQLRDLEQEL 832 (1201)
T ss_pred HHHHhCCCC---HH----HHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHH
Confidence 333322111 11 1233332 22223222 22345677777776654332 334444444444444
Q ss_pred HHHHHHHHHHH
Q 002541 781 ATRKEALKVAM 791 (910)
Q Consensus 781 e~~k~aleeAl 791 (910)
......+....
T Consensus 833 ~~l~~~~~~~~ 843 (1201)
T PF12128_consen 833 QELEQELNQLQ 843 (1201)
T ss_pred HHHHHHHHHHH
Confidence 44444443333
No 25
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=98.57 E-value=0.0067 Score=74.76 Aligned_cols=126 Identities=22% Similarity=0.257 Sum_probs=79.7
Q ss_pred ccccchHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 002541 277 AHRMQTVERRKYVEQELERSHEEMPEYRKRSEAAEVAKNQVLKELDQTKRLVEELKLNLERAQTEEHQAKQDSELAKLRV 356 (910)
Q Consensus 277 ~~r~~~~ER~~~~e~EL~~~qeeL~k~Keqle~aE~~k~qal~ELe~aKr~ieeL~~kLE~a~~e~~~A~e~sE~ak~r~ 356 (910)
++.+-.+..+..+..+|..+.+.|..++.+++..-.-..+...||+-.+..++-|.......+.+..+|..-.
T Consensus 163 sp~~~~~~~~~hL~velAdle~kir~LrqElEEK~enll~lr~eLddleae~~klrqe~~e~l~ea~ra~~yr------- 235 (1195)
T KOG4643|consen 163 SPYDIVVKKNLHLEVELADLEKKIRTLRQELEEKFENLLRLRNELDDLEAEISKLRQEIEEFLDEAHRADRYR------- 235 (1195)
T ss_pred CcchhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-------
Confidence 3344455667788889999999999999999988877778888888888888888877777777766653211
Q ss_pred HHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 357 EEMEQGIADDASVAARAQLEVAKARHVAAVSELKSVKDEVESLRKDYASLVTEKDIAVKKAE 418 (910)
Q Consensus 357 ~ELEqgia~~~~~a~k~eLE~ar~q~a~~laEL~svKeELekLrqEl~~l~eeK~~A~k~Ae 418 (910)
.|+ .++.+.-+.+...|...+-+++.+|.-++.|+++-..++++|.--..+.+
T Consensus 236 del---------dalre~aer~d~~ykerlmDs~fykdRveelkedN~vLleekeMLeeQLq 288 (1195)
T KOG4643|consen 236 DEL---------DALREQAERPDTTYKERLMDSDFYKDRVEELKEDNRVLLEEKEMLEEQLQ 288 (1195)
T ss_pred hHH---------HHHHHhhhcCCCccchhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 111 12222333333445555555555555555555555555555554444433
No 26
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=98.55 E-value=0.013 Score=77.05 Aligned_cols=126 Identities=13% Similarity=0.212 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh----
Q 002541 287 KYVEQELERSHEEMPEYRKRSEAAEVAKNQVLKELDQTKRLVEELKLNLERAQTEEHQAKQDSELAKLRVEEMEQG---- 362 (910)
Q Consensus 287 ~~~e~EL~~~qeeL~k~Keqle~aE~~k~qal~ELe~aKr~ieeL~~kLE~a~~e~~~A~e~sE~ak~r~~ELEqg---- 362 (910)
..+..+|......+..|++.....+...-++..+|++++.. +..+++......-......-..+.+...|...
T Consensus 915 ~~l~~~L~~a~s~i~~yqe~~~s~eqsl~~~ks~lde~~~~---~ea~ie~~~~k~tslE~~ls~L~~~~~~l~~e~~~~ 991 (1822)
T KOG4674|consen 915 TDLKEELTDALSQIREYQEEYSSLEQSLESVKSELDETRLE---LEAKIESLHKKITSLEEELSELEKEIENLREELELS 991 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33455677777888889998888998888888888888844 44445554444444443332333333343321
Q ss_pred hhhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 363 IADD--ASVAARAQLEVAKARHVAAVSELKSVKDEVESLRKDYASLVTEKDIAVK 415 (910)
Q Consensus 363 ia~~--~~~a~k~eLE~ar~q~a~~laEL~svKeELekLrqEl~~l~eeK~~A~k 415 (910)
+..+ .-..+..++.+++..+..+..-...+-.-+..++.++......-..|..
T Consensus 992 ~k~~e~~~~~~~~e~~sl~ne~~~~~~~~s~~~~~~~~~k~dl~~~~~~~~~a~~ 1046 (1822)
T KOG4674|consen 992 TKGKEDKLLDLSREISSLQNELKSLLKAASQANEQIEDLQNDLKTETEQLRKAQS 1046 (1822)
T ss_pred ccchhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 1134556666666666655555555555566666665555444444443
No 27
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.51 E-value=0.0069 Score=71.74 Aligned_cols=55 Identities=29% Similarity=0.398 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 002541 305 KRSEAAEVAKNQVLKELDQTKRLVEELKLNLERAQTEEHQAKQDSELAKLRVEEM 359 (910)
Q Consensus 305 eqle~aE~~k~qal~ELe~aKr~ieeL~~kLE~a~~e~~~A~e~sE~ak~r~~EL 359 (910)
.+++.+...+..++......+..+..|...+++++.+.....+..+..+.+.+++
T Consensus 143 ~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel 197 (546)
T PF07888_consen 143 NQLEECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKEL 197 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555556666666666666666666666666555554444444444444
No 28
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=98.42 E-value=0.023 Score=74.02 Aligned_cols=42 Identities=14% Similarity=0.189 Sum_probs=19.5
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 753 VAAISQIEVAKASELRSLERLEEVNKEIATRKEALKVAMEKA 794 (910)
Q Consensus 753 a~A~aQvEeAkese~~~l~Kle~~~~Eie~~k~aleeAlera 794 (910)
-....++...+..-.....++.....++...+..++......
T Consensus 819 ~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~le~~~~~~ 860 (1201)
T PF12128_consen 819 PELEEQLRDLEQELQELEQELNQLQKEVKQRRKELEEELKAL 860 (1201)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444555555555554444444444333
No 29
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.40 E-value=0.0097 Score=73.25 Aligned_cols=71 Identities=21% Similarity=0.264 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 381 RHVAAVSELKSVKDEVESLRKDYASLVTEKDIAVKKAEEAISASKEVEKTVEELTIELIATKESLESAHAA 451 (910)
Q Consensus 381 q~a~~laEL~svKeELekLrqEl~~l~eeK~~A~k~AeEA~~aak~~eekveeLt~EL~~lKEsLe~a~aa 451 (910)
+|+.--.||.-+..+|.+|...+..+.+.-+.-..+...+...+..+...+.+|...|..+++..+.+.+.
T Consensus 224 EYtiYdrEl~E~~~~l~~le~~r~~~~e~s~~~~~~~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~ 294 (1200)
T KOG0964|consen 224 EYTIYDRELNEINGELERLEEDRSSAPEESEQYIDALDKVEDESEDLKCEIKELENKLTNLREEKEQLKAR 294 (1200)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 58888899999999999999999988888777777777778888888888888888888888877776654
No 30
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=98.31 E-value=0.023 Score=68.68 Aligned_cols=34 Identities=21% Similarity=0.312 Sum_probs=16.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 758 QIEVAKASELRSLERLEEVNKEIATRKEALKVAM 791 (910)
Q Consensus 758 QvEeAkese~~~l~Kle~~~~Eie~~k~aleeAl 791 (910)
+++..|+...+--+|.+.+..+|.+..-.+..++
T Consensus 484 e~emlKaen~rqakkiefmkEeiQethldyR~el 517 (1265)
T KOG0976|consen 484 EYEMLKAENERQAKKIEFMKEEIQETHLDYRSEL 517 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444445555555555555544444433
No 31
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=98.23 E-value=0.031 Score=67.37 Aligned_cols=109 Identities=17% Similarity=0.227 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhhh
Q 002541 287 KYVEQELERSHEEMPEYRKRSEAAEVAKNQVLKELDQTKRLVEELKLNLERAQTEEHQAKQDSELAKLRVEEMEQGIADD 366 (910)
Q Consensus 287 ~~~e~EL~~~qeeL~k~Keqle~aE~~k~qal~ELe~aKr~ieeL~~kLE~a~~e~~~A~e~sE~ak~r~~ELEqgia~~ 366 (910)
..++..|..+.+.+.+|+ .-.|......+...|..+...+..+...|..+......=....+..+.++++|...+...
T Consensus 82 ~~ie~~l~~ae~~~~~~~--f~~a~~~~~~~~~~l~~~e~~~~~i~~~l~~l~~~e~~nr~~v~~l~~~y~~~rk~ll~~ 159 (569)
T PRK04778 82 PDIEEQLFEAEELNDKFR--FRKAKHEINEIESLLDLIEEDIEQILEELQELLESEEKNREEVEQLKDLYRELRKSLLAN 159 (569)
T ss_pred hhHHHHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345555666666666554 345566667777778888888888888888888877777777778888888886654432
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 367 ASVAARAQLEVAKARHVAAVSELKSVKDEVESLRKDYASLVTE 409 (910)
Q Consensus 367 ~~~a~k~eLE~ar~q~a~~laEL~svKeELekLrqEl~~l~ee 409 (910)
+..|..++..|+.--.+|+..-.+|..+...
T Consensus 160 ------------~~~~G~a~~~le~~l~~~e~~f~~f~~l~~~ 190 (569)
T PRK04778 160 ------------RFSFGPALDELEKQLENLEEEFSQFVELTES 190 (569)
T ss_pred ------------CccccchHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3357777777766666666665555555443
No 32
>PRK04863 mukB cell division protein MukB; Provisional
Probab=98.23 E-value=0.066 Score=70.81 Aligned_cols=64 Identities=19% Similarity=0.146 Sum_probs=48.7
Q ss_pred chHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 002541 281 QTVERRKYVEQELERSHEEMPEYRKRSEAAEVAKNQVLKELDQTKRLVEELKLNLERAQTEEHQAKQDSELA 352 (910)
Q Consensus 281 ~~~ER~~~~e~EL~~~qeeL~k~Keqle~aE~~k~qal~ELe~aKr~ieeL~~kLE~a~~e~~~A~e~sE~a 352 (910)
++.+|+..++. +..|+.++..+......+...|.+....+.+|..+|+.+..+...|.+-.++.
T Consensus 277 ~~eERR~liEE--------Aag~r~rk~eA~kkLe~tE~nL~rI~diL~ELe~rL~kLEkQaEkA~kyleL~ 340 (1486)
T PRK04863 277 HANERRVHLEE--------ALELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLNLV 340 (1486)
T ss_pred CHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678877765 35677888888888888888888888888888888888888877775544433
No 33
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=98.20 E-value=0.041 Score=67.44 Aligned_cols=72 Identities=26% Similarity=0.331 Sum_probs=58.2
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Q 002541 290 EQELERSHEEMPEYRKRSEAAEVAKNQVLKELDQTKRLVEELKLNLERAQTEEHQAKQDSELAKLRVEEMEQ 361 (910)
Q Consensus 290 e~EL~~~qeeL~k~Keqle~aE~~k~qal~ELe~aKr~ieeL~~kLE~a~~e~~~A~e~sE~ak~r~~ELEq 361 (910)
..+...+|++|.+.+.....|-.++.+...||..+-..|+-+++.=|.+.+-.+....+.|..+.|+.+|+-
T Consensus 275 m~qqa~Lqrel~raR~e~keaqe~ke~~k~emad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~delet 346 (1243)
T KOG0971|consen 275 MEQQADLQRELKRARKEAKEAQEAKERYKEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELET 346 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344667788888888888888888888888888888888888888788877777788888888888888774
No 34
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=98.20 E-value=0.048 Score=68.16 Aligned_cols=302 Identities=17% Similarity=0.158 Sum_probs=162.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH
Q 002541 386 VSELKSVKDEVESLRKDYASLVTEKDIAVKKAEEA----ISASKEVEKTVEELTIELIATKESLESAHAAHLEAE---EQ 458 (910)
Q Consensus 386 laEL~svKeELekLrqEl~~l~eeK~~A~k~AeEA----~~aak~~eekveeLt~EL~~lKEsLe~a~aa~~eAE---e~ 458 (910)
-.+|.+.+.|.+.+..-+..+...-+.|.++|+.+ .......++-+.+|..=|..+++.|..-.+.-...+ +.
T Consensus 1421 ~~~l~~~~ae~eq~~~~v~ea~~~aseA~~~Aq~~~~~a~as~~q~~~s~~el~~Li~~v~~Flt~~~adp~si~~vA~~ 1500 (1758)
T KOG0994|consen 1421 DTQLRSKLAEAEQTLSMVREAKLSASEAQQSAQRALEQANASRSQMEESNRELRNLIQQVRDFLTQPDADPDSIEEVAEE 1500 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 35555666665555544444444444444444433 333444445555555555555555443221111111 10
Q ss_pred HHHHhh--hhhh------hhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH---HHHHHHHh--hhhh
Q 002541 459 RIGAAM--ARDQ------DSHLWEKELKQAEEELQKLTQQILSAKDLRSKLDTASALLLDLKA---ELSAYMES--KLKE 525 (910)
Q Consensus 459 r~~v~l--a~eq------d~~~~e~eL~qaEEEie~Lr~el~~a~dLeakLeea~~~Le~Lk~---ELa~~lE~--kL~e 525 (910)
-+.+.| .-+| +..+--..|...+.-+.+.+-+|.++..|++....+.+..+.++. ++..+|+. +...
T Consensus 1501 vL~l~lp~tpeqi~~L~~~I~e~v~sL~nVd~IL~~T~~di~ra~~L~s~A~~a~~~A~~v~~~ae~V~eaL~~Ad~Aq~ 1580 (1758)
T KOG0994|consen 1501 VLALELPLTPEQIQQLTGEIQERVASLPNVDAILSRTKGDIARAENLQSEAERARSRAEDVKGQAEDVVEALEEADVAQG 1580 (1758)
T ss_pred HHhccCCCCHHHHHHHHHHHHHHHHhcccHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 011000 0011 011122345556666777777888888888888888877777765 33333331 1000
Q ss_pred hhccccCCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 002541 526 ESNEEGHSNGELEEPERKTHTDIQAAVASAKKELEEVKLNIEKATAEVNCLKVAATSLQSELEREKSALAAIRQREGMAS 605 (910)
Q Consensus 526 ~~~ei~~lq~~L~E~ek~~~~~l~esL~sakkELee~K~~Leka~eEl~sL~~~vesLrsELek~K~ELeelKeke~~a~ 605 (910)
.+ . ..+++ ........+..|..++.+...++..+..+...+..|+..++.|+.+..+--.+-..+...-..+.
T Consensus 1581 ~a-~-~ai~~-----a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~qns~~A~~a~~~a~sa~ 1653 (1758)
T KOG0994|consen 1581 EA-Q-DAIQG-----ADRDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEELKHKAAQNSAEAKQAEKTAGSAK 1653 (1758)
T ss_pred HH-H-HHHHh-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 00 0 11111 12223455666888888888888888889999999998888888877665555555555445555
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHH
Q 002541 606 VAVASLEAELDRTRSEIALVQMKEKEAREKTVELPKQLQVAAQEADQAKSLAQAAGEELHKAKEEAEQAKAGASTIESRL 685 (910)
Q Consensus 606 ~eI~sL~eELer~ksELe~~kakeeeare~~~eL~~eLqqls~EaEeAKkeae~ae~EL~~lkeEaE~aKaeI~taE~rL 685 (910)
....+.+..++.+....+.+..-.++..+.........+++..+++.+-..+..+-..|.++.-+++.....|......|
T Consensus 1654 ~~A~~a~q~~~~lq~~~~~~~~l~~~r~~g~~~ar~rAe~L~~eA~~Ll~~a~~kl~~l~dLe~~y~~~~~~L~~~~aeL 1733 (1758)
T KOG0994|consen 1654 EQALSAEQGLEILQKYYELVDRLLEKRMEGSQAARERAEQLRTEAEKLLGQANEKLDRLKDLELEYLRNEQALEDKAAEL 1733 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHh
Confidence 55555555555555555444443333333333444455677777777766666666677777766666665555555555
Q ss_pred HHHHHHHHH
Q 002541 686 TAARKEIEA 694 (910)
Q Consensus 686 ~aA~KElEA 694 (910)
.-+.++++.
T Consensus 1734 ~~Le~r~~~ 1742 (1758)
T KOG0994|consen 1734 AGLEKRVES 1742 (1758)
T ss_pred hhHHHHHHH
Confidence 444444433
No 35
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=98.18 E-value=0.054 Score=68.06 Aligned_cols=444 Identities=17% Similarity=0.213 Sum_probs=265.8
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhhhh
Q 002541 288 YVEQELERSHEEMPEYRKRSEAAEVAKNQVLKELDQTKRLVEELKLNLERAQTEEHQAKQDSELAKLRVEEMEQGIADDA 367 (910)
Q Consensus 288 ~~e~EL~~~qeeL~k~Keqle~aE~~k~qal~ELe~aKr~ieeL~~kLE~a~~e~~~A~e~sE~ak~r~~ELEqgia~~~ 367 (910)
..-++|+.+.+.+..+-+.+..+-.-......+|...++.+.++..+|+.++. .+....+...|...++
T Consensus 204 mkaT~L~qi~~~~~~~~~~~~~~~~~i~~~~e~i~~l~k~i~e~~e~~~~~~~--------~e~~~~~l~~Lk~k~~--- 272 (1074)
T KOG0250|consen 204 MKATQLEQITESYSEIMESLDHAKELIDLKEEEIKNLKKKIKEEEEKLDNLEQ--------LEDLKENLEQLKAKMA--- 272 (1074)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHH---
Confidence 45677899999999999999888888888888888888888888877665543 3344456666654444
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 368 SVAARAQLEVAKARHVAAVSELKSVKDEVESLRKDYASLVTEKDIAVKKAEEAISASKEVEKTVEELTIELIATKESLES 447 (910)
Q Consensus 368 ~~a~k~eLE~ar~q~a~~laEL~svKeELekLrqEl~~l~eeK~~A~k~AeEA~~aak~~eekveeLt~EL~~lKEsLe~ 447 (910)
|.. -.....+|....+++.+.+..++.+-+.-.....+..++.......+.++..+..+..+..+.++.
T Consensus 273 ---W~~--------V~~~~~ql~~~~~~i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~ 341 (1074)
T KOG0250|consen 273 ---WAW--------VNEVERQLNNQEEEIKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEE 341 (1074)
T ss_pred ---HHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHH
Confidence 443 445556666777777777777777777777777777777777788888888888887777777777
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 002541 448 AHAAHLEAEEQRIGAAMARDQDSHLWEKELKQAEEELQKLTQQILSAKDLRSKLDTASALLLDLKAELSAYMESKLKEES 527 (910)
Q Consensus 448 a~aa~~eAEe~r~~v~la~eqd~~~~e~eL~qaEEEie~Lr~el~~a~dLeakLeea~~~Le~Lk~ELa~~lE~kL~e~~ 527 (910)
++......-..-..+ +......+..+++.+.++..+++ .+..+++++...+...+.+..
T Consensus 342 ~r~~~~~~~re~~~~----~~~~~~~~n~i~~~k~~~d~l~k-----------------~I~~~~~~~~~~~~~~~~e~e 400 (1074)
T KOG0250|consen 342 ARKDLDDLRREVNDL----KEEIREIENSIRKLKKEVDRLEK-----------------QIADLEKQTNNELGSELEERE 400 (1074)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHhhhhhhHHHHH
Confidence 665433211110000 00111112233333333333333 333333333222222222111
Q ss_pred ccccCCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH--
Q 002541 528 NEEGHSNGELEEPERKTHTDIQAAVASAKKELEEVKLNIEKATAEVNCLKVAATSLQSELEREKSALAAIRQREGMAS-- 605 (910)
Q Consensus 528 ~ei~~lq~~L~E~ek~~~~~l~esL~sakkELee~K~~Leka~eEl~sL~~~vesLrsELek~K~ELeelKeke~~a~-- 605 (910)
.++..| +..+..++..+.++..|+++++..+....++...+...+..|+..+..-...|..++.--....
T Consensus 401 ~k~~~L--------~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~lk~~k~dkvs~ 472 (1074)
T KOG0250|consen 401 NKLEQL--------KKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENISEELKDLKKTKTDKVSA 472 (1074)
T ss_pred HHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhh
Confidence 111000 1112333445566777777777777777777777777777777777777777666644333222
Q ss_pred --HHHHhHHHHHHHHHHH-----------------------HHHH-----------------------------------
Q 002541 606 --VAVASLEAELDRTRSE-----------------------IALV----------------------------------- 625 (910)
Q Consensus 606 --~eI~sL~eELer~ksE-----------------------Le~~----------------------------------- 625 (910)
..+..|..++++.... ++.+
T Consensus 473 FG~~m~~lL~~I~r~~~~f~~~P~GPlG~~Vtl~~~KWa~aIE~~L~n~lnaFiv~sh~D~~~Lr~i~~~~~~~~~~ptI 552 (1074)
T KOG0250|consen 473 FGPNMPQLLRAIERRKRRFQTPPKGPLGKYVTLKEPKWALAIERCLGNLLNAFIVTSHKDARILRAIMRRLKIPGNRPTI 552 (1074)
T ss_pred cchhhHHHHHHHHHHHhcCCCCCCCCccceeEecCcHHHHHHHHHHHHhhhhheeCCHhhHHHHHHHHHHcCCCCCCCcE
Confidence 2366677777776665 0000
Q ss_pred --------------------------------------------------HHHHHHHHHhhh-c----------------
Q 002541 626 --------------------------------------------------QMKEKEAREKTV-E---------------- 638 (910)
Q Consensus 626 --------------------------------------------------kakeeeare~~~-e---------------- 638 (910)
+. -.++++.|. +
T Consensus 553 vvs~~~~~~y~~~~~p~~~~pTil~~le~ddp~V~N~LID~s~iE~~lLiEd-k~Ea~~~m~s~~~p~n~~~aytldg~~ 631 (1074)
T KOG0250|consen 553 VVSSFTPFDYSVGRNPGYEFPTILDALEFDDPEVLNVLIDKSGIEQVLLIED-KKEAREFMQSDKPPANVTKAYTLDGRQ 631 (1074)
T ss_pred EEecCCccccccccCCCCCCCceeeeeecCChHHHHHhhhhccceeEEEecc-hHHHHHHHhcCCCCccceeeeccCccc
Confidence 00 011222211 0
Q ss_pred ----ch----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH
Q 002541 639 ----LP----------------KQLQVAAQEADQAKSLAQAAGEELHKAKEEAEQAKAGASTIESRLTAARKEIEAARAS 698 (910)
Q Consensus 639 ----L~----------------~eLqqls~EaEeAKkeae~ae~EL~~lkeEaE~aKaeI~taE~rL~aA~KElEAAKAs 698 (910)
.+ .--..+..++++++.++..++.++..+......++..|+..+.++..+...+...+--
T Consensus 632 ~~~~g~~~~~ySt~~~~~r~~~~~~~s~d~~ie~le~e~~~l~~~~~~l~~~~~~~e~~l~e~~~~~~~l~~~~~q~~~~ 711 (1074)
T KOG0250|consen 632 IFAGGPNYRVYSTRGTRARRPGVDEFSFDDEIEDLEREASRLQKEILELENQRREAEKNLEELEKKLRELSEHIEQIKRR 711 (1074)
T ss_pred cccCCCCcceeccCCCCCCCccccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 0013455677888888888888888888888888888888888888888888776666
Q ss_pred HHHHHHHHHHhhhhhhhcccCCCCCCCccccchHhhHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 002541 699 EKLALAAIKALQESESAQRTDDVDSPTGVTLSLEEYYELSKRAHEAEEQANMRVVAAISQIEVAKASELRSLERLEEVNK 778 (910)
Q Consensus 699 Ea~Ala~ikaL~e~~~~~~~~~~~~~~~Itls~eEy~~L~~ka~Eaee~a~kKVa~A~aQvEeAkese~~~l~Kle~~~~ 778 (910)
-.....+|..|... +.. -.+.+..+..|....... .+.+....+.++.++.....+..+..++..
T Consensus 712 ~~~~~~em~el~n~---~e~--------~~~~~~~~~~l~~ei~~~----~~eIe~~~~~~e~l~~e~e~~~~e~~e~~~ 776 (1074)
T KOG0250|consen 712 IRKKRAEMTELKNT---AEE--------KQVDISKLEDLAREIKKK----EKEIEEKEAPLEKLKEELEHIELEAQELEE 776 (1074)
T ss_pred HHHHHHHHHHHhhh---hhh--------hhcchhhhHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666532 000 011123344444433322 234556667777777777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 002541 779 EIATRKEALKVAMEKAEKAK 798 (910)
Q Consensus 779 Eie~~k~aleeAleraE~Ae 798 (910)
..+..+.++.....+.+.+.
T Consensus 777 ~~~~~~~~l~~e~~~l~~l~ 796 (1074)
T KOG0250|consen 777 YYAAGREKLQGEISKLDALK 796 (1074)
T ss_pred HHHHHHHHHHHHHHHhhHHH
Confidence 77778888888888887776
No 36
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.18 E-value=0.0027 Score=68.21 Aligned_cols=129 Identities=15% Similarity=0.238 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHH
Q 002541 566 IEKATAEVNCLKVAATSLQSELEREKSALAAIRQREGMASVAVASLEAELDRTRSEIALVQMKEKEAREKTVELPKQLQV 645 (910)
Q Consensus 566 Leka~eEl~sL~~~vesLrsELek~K~ELeelKeke~~a~~eI~sL~eELer~ksELe~~kakeeeare~~~eL~~eLqq 645 (910)
|..+...+......++.....|..+...|+.+..+...+...+..|..+|..+...|..+.....++......+...+..
T Consensus 101 l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~ 180 (237)
T PF00261_consen 101 LKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRD 180 (237)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHH
Confidence 33333333344444444445555555555666666666666666666666666666666666655555555555556666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHH
Q 002541 646 AAQEADQAKSLAQAAGEELHKAKEEAEQAKAGASTIESRLTAARKEIEA 694 (910)
Q Consensus 646 ls~EaEeAKkeae~ae~EL~~lkeEaE~aKaeI~taE~rL~aA~KElEA 694 (910)
+...+.++...+..+...+..+...+..+...|.....++..+..+++.
T Consensus 181 L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~eld~ 229 (237)
T PF00261_consen 181 LEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEELDQ 229 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666666666666666555555555555555555544
No 37
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=98.17 E-value=0.0092 Score=74.58 Aligned_cols=39 Identities=21% Similarity=0.418 Sum_probs=23.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 002541 471 HLWEKELKQAEEELQKLTQQILSAKDLRSKLDTASALLLDLK 512 (910)
Q Consensus 471 ~~~e~eL~qaEEEie~Lr~el~~a~dLeakLeea~~~Le~Lk 512 (910)
...+++|...++++....+.+ ..|+.+++.....+..++
T Consensus 277 ~~~~~ql~~~~~~i~~~qek~---~~l~~ki~~~~~k~~~~r 315 (1074)
T KOG0250|consen 277 NEVERQLNNQEEEIKKKQEKV---DTLQEKIEEKQGKIEEAR 315 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHh
Confidence 344666666666666655543 366666666666666555
No 38
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=98.12 E-value=0.049 Score=65.11 Aligned_cols=73 Identities=18% Similarity=0.232 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHH
Q 002541 549 QAAVASAKKELEEVKLNIEKATAEVNCLKVAATSLQSELER-EKSALAAIRQREGMASVAVASLEAELDRTRSE 621 (910)
Q Consensus 549 ~esL~sakkELee~K~~Leka~eEl~sL~~~vesLrsELek-~K~ELeelKeke~~a~~eI~sL~eELer~ksE 621 (910)
...+.....++-.....+.........+++.+++++..|.+ -+..-..++++..+....|..|...|++....
T Consensus 529 ~ae~~rq~~~~~~sr~~~~~le~~~~a~qat~d~a~~Dlqk~nrlkQdear~~~~~lvqqv~dLR~~L~~~Eq~ 602 (961)
T KOG4673|consen 529 QAELTRQKDYYSNSRALAAALEAQALAEQATNDEARSDLQKENRLKQDEARERESMLVQQVEDLRQTLSKKEQQ 602 (961)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455666666666677777777888888888888887733 33445678888888888899888888776543
No 39
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=98.11 E-value=0.071 Score=66.78 Aligned_cols=23 Identities=13% Similarity=0.174 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 002541 312 VAKNQVLKELDQTKRLVEELKLN 334 (910)
Q Consensus 312 ~~k~qal~ELe~aKr~ieeL~~k 334 (910)
....++-..++..+++|..++..
T Consensus 1225 ~~i~~l~~~~~~lr~~l~~~~e~ 1247 (1758)
T KOG0994|consen 1225 EDIAQLASATESLRRQLQALTED 1247 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444444444444444444444
No 40
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.09 E-value=0.082 Score=66.70 Aligned_cols=182 Identities=18% Similarity=0.236 Sum_probs=116.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHH
Q 002541 300 MPEYRKRSEAAEVAKNQVLKELDQTKRLVEELKLNLERAQTEEHQAKQDSELAKLRVEEMEQGIADDASVAARAQLEVAK 379 (910)
Q Consensus 300 L~k~Keqle~aE~~k~qal~ELe~aKr~ieeL~~kLE~a~~e~~~A~e~sE~ak~r~~ELEqgia~~~~~a~k~eLE~ar 379 (910)
...+++.+..-+..-.+..+.|.++..-+..|...+++...+...+....+-+.....+++..+... ...++..+
T Consensus 386 ~~~~k~~~~~~e~~~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L-----~~~~~~~~ 460 (1293)
T KOG0996|consen 386 FESLKKKFQDLEREDVKREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQL-----EELLEKEE 460 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHH-----HHHHHHHH
Confidence 3345566666666667777777777777777777777777777777767777777777776555442 23333333
Q ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 380 ARHVAAVSEL----KSVKDEVESLRKDYASLVTEKDIAVKKAEEAISASKEVEKTVEELTIELIATKESLESAHAAHLEA 455 (910)
Q Consensus 380 ~q~a~~laEL----~svKeELekLrqEl~~l~eeK~~A~k~AeEA~~aak~~eekveeLt~EL~~lKEsLe~a~aa~~eA 455 (910)
......+..| .....++.+++.++.......+.+..++.-++..++.+..+.+.+...+..+++.|........
T Consensus 461 ~~l~e~~~~l~~~t~~~~~e~~~~ekel~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~-- 538 (1293)
T KOG0996|consen 461 RELDEILDSLKQETEGIREEIEKLEKELMPLLKQVNEARSELDVAESELDILLSRHETGLKKVEELKGKLLASSESLK-- 538 (1293)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 3333333333 3567788888888888888888888888888888888888888888888888888887654332
Q ss_pred HHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 002541 456 EEQRIGAAMARDQDSHLWEKELKQAEEELQKLTQQ 490 (910)
Q Consensus 456 Ee~r~~v~la~eqd~~~~e~eL~qaEEEie~Lr~e 490 (910)
+.+..+. ....+-..|..++.++..++..++..
T Consensus 539 -e~~~~l~-~~k~~l~~~k~e~~~~~k~l~~~~~e 571 (1293)
T KOG0996|consen 539 -EKKTELD-DLKEELPSLKQELKEKEKELPKLRKE 571 (1293)
T ss_pred -HHHHHHH-HHHHhhhhHHHHHHHHHHhHHHHHHH
Confidence 2222211 11222334455555555555554443
No 41
>PRK01156 chromosome segregation protein; Provisional
Probab=98.09 E-value=0.085 Score=66.75 Aligned_cols=46 Identities=17% Similarity=0.198 Sum_probs=19.0
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 293 LERSHEEMPEYRKRSEAAEVAKNQVLKELDQTKRLVEELKLNLERA 338 (910)
Q Consensus 293 L~~~qeeL~k~Keqle~aE~~k~qal~ELe~aKr~ieeL~~kLE~a 338 (910)
+..++.+|..++.++...+.....+..++...+..++.+...++.+
T Consensus 192 l~~~e~eL~~~~~~i~el~~~~~~l~~~i~~~~~el~~~~~~l~~l 237 (895)
T PRK01156 192 LKSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNL 237 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444444444343333
No 42
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.07 E-value=0.0064 Score=65.39 Aligned_cols=95 Identities=16% Similarity=0.236 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 002541 559 LEEVKLNIEKATAEVNCLKVAATSLQSELEREKSALAAIRQREGMASVAVASLEAELDRTRSEIALVQMKEKEAREKTVE 638 (910)
Q Consensus 559 Lee~K~~Leka~eEl~sL~~~vesLrsELek~K~ELeelKeke~~a~~eI~sL~eELer~ksELe~~kakeeeare~~~e 638 (910)
|..+...|..+...+..+...+..|..+|..+...|..+......+......+...+..+...|..+..+...+...+..
T Consensus 122 l~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~ 201 (237)
T PF00261_consen 122 LKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKK 201 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445555555555555556666666666666666666666666666666666666666665555444444333333
Q ss_pred chHHHHHHHHHHHHH
Q 002541 639 LPKQLQVAAQEADQA 653 (910)
Q Consensus 639 L~~eLqqls~EaEeA 653 (910)
|...+..+..++...
T Consensus 202 Le~~id~le~eL~~~ 216 (237)
T PF00261_consen 202 LEKEIDRLEDELEKE 216 (237)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444443333
No 43
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=97.98 E-value=0.049 Score=60.34 Aligned_cols=29 Identities=14% Similarity=0.311 Sum_probs=13.1
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 002541 293 LERSHEEMPEYRKRSEAAEVAKNQVLKEL 321 (910)
Q Consensus 293 L~~~qeeL~k~Keqle~aE~~k~qal~EL 321 (910)
|..+-.-|..|=++....|.....+..+|
T Consensus 6 L~~LNdRla~YIekVr~LE~~N~~Le~~i 34 (312)
T PF00038_consen 6 LQSLNDRLASYIEKVRFLEQENKRLESEI 34 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 44444444555554444444444443333
No 44
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.87 E-value=0.18 Score=63.02 Aligned_cols=67 Identities=25% Similarity=0.333 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 382 HVAAVSELKSVKDEVESLRKDYASLVTEKDIAVKKAEEAIS--------ASKEVEKTVEELTIELIATKESLESAHAAH 452 (910)
Q Consensus 382 ~a~~laEL~svKeELekLrqEl~~l~eeK~~A~k~AeEA~~--------aak~~eekveeLt~EL~~lKEsLe~a~aa~ 452 (910)
|-..+.++...++++..+++++..... +.+.+++... +...-+.++.+|..+|..++..++......
T Consensus 736 ~~~~~~~~~~~~e~v~e~~~~Ike~~~----~~k~~~~~i~~lE~~~~d~~~~re~rlkdl~keik~~k~~~e~~~~~~ 810 (1174)
T KOG0933|consen 736 FHKLLDDLKELLEEVEESEQQIKEKER----ALKKCEDKISTLEKKMKDAKANRERRLKDLEKEIKTAKQRAEESSKEL 810 (1174)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555666666666665543332 2222222221 122456778888888877776666554433
No 45
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=97.80 E-value=0.19 Score=61.96 Aligned_cols=142 Identities=22% Similarity=0.296 Sum_probs=87.0
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhh--hhhH
Q 002541 292 ELERSHEEMPEYRKRSEAAEVAKNQVLKELDQTKRLVEELKLNLERAQTEEHQAKQDSELAKLRVEEMEQGIAD--DASV 369 (910)
Q Consensus 292 EL~~~qeeL~k~Keqle~aE~~k~qal~ELe~aKr~ieeL~~kLE~a~~e~~~A~e~sE~ak~r~~ELEqgia~--~~~~ 369 (910)
.|..++-||...+..+ ..+..|.++......+|....+.+..++.+.+.+.--.|+|-.-|=+..+. ..+.
T Consensus 35 ~i~~l~~elk~~~~~~-------~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENi 107 (717)
T PF09730_consen 35 RILELENELKQLRQEL-------SNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDYSELEEENI 107 (717)
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 3444444444444444 444445555555555555556666666555555555455554333333222 2335
Q ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 370 AARAQLEVAKA---RHVAAVSELKSVKDEVESLRKDYASLVTEKDIAVKKAEEAISASKEVEKTVEELTIELIA 440 (910)
Q Consensus 370 a~k~eLE~ar~---q~a~~laEL~svKeELekLrqEl~~l~eeK~~A~k~AeEA~~aak~~eekveeLt~EL~~ 440 (910)
.+|.++-+-|. .|..+=-|+....+|++-|+.+++.+..-|+.+.++.+||--+++.=-+....|..||..
T Consensus 108 slQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee~~rLk~iae~qleEALesl~~EReqk~~LrkEL~~ 181 (717)
T PF09730_consen 108 SLQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLEEAARLKEIAEKQLEEALESLKSEREQKNALRKELDQ 181 (717)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56776666664 355556677777777777777888888888888888888888877777777777777765
No 46
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=97.78 E-value=0.18 Score=60.19 Aligned_cols=38 Identities=13% Similarity=0.328 Sum_probs=30.9
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 291 QELERSHEEMPEYRKRSEAAEVAKNQVLKELDQTKRLV 328 (910)
Q Consensus 291 ~EL~~~qeeL~k~Keqle~aE~~k~qal~ELe~aKr~i 328 (910)
.||..+---|+.|=++....|+....+..+|...+..+
T Consensus 42 ~El~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~~ 79 (546)
T KOG0977|consen 42 KELQELNDRLAVYIEKVRFLEAQNRKLEHDINLLRGVV 79 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 35888888999999999999999988887777666554
No 47
>PRK04863 mukB cell division protein MukB; Provisional
Probab=97.77 E-value=0.39 Score=63.87 Aligned_cols=192 Identities=20% Similarity=0.276 Sum_probs=86.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHh-HHHHHHHHHHHHHH
Q 002541 546 TDIQAAVASAKKELEEVKLNIEKATAEVNCLKVAATSLQSELEREKSALAAIRQREGMASVAVAS-LEAELDRTRSEIAL 624 (910)
Q Consensus 546 ~~l~esL~sakkELee~K~~Leka~eEl~sL~~~vesLrsELek~K~ELeelKeke~~a~~eI~s-L~eELer~ksELe~ 624 (910)
..++..+..++.+.+.++..+..+..+.......+.+++..+......+..++..+...-..... .+..+...+ ..
T Consensus 988 ~~Le~~Le~iE~~~~~areql~qaq~q~~q~~q~l~slksslq~~~e~L~E~eqe~~~~g~~~~~~~~~~~~~~~---~~ 1064 (1486)
T PRK04863 988 EKLRQRLEQAEQERTRAREQLRQAQAQLAQYNQVLASLKSSYDAKRQMLQELKQELQDLGVPADSGAEERARARR---DE 1064 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHhH---HH
Confidence 33344444444444444444444444444444444444444444444444444433332111111 111111111 22
Q ss_pred HHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---------HHHHHHHHHHHHHHH---
Q 002541 625 VQMKEKEAREKTVELPKQLQVAAQEADQAKSLAQAAGEELHKAKEEAEQAKAG---------ASTIESRLTAARKEI--- 692 (910)
Q Consensus 625 ~kakeeeare~~~eL~~eLqqls~EaEeAKkeae~ae~EL~~lkeEaE~aKae---------I~taE~rL~aA~KEl--- 692 (910)
+.......+.....|...+.....|++.+...+.....++..++.++..+|.. -..++.+|..-.--|
T Consensus 1065 l~~~l~~~~~~~~~~~~~~~~re~EIe~L~kkL~~~~~e~~~~re~I~~aK~~W~~v~~~~~~~~~~~~l~~~~~~~~~~ 1144 (1486)
T PRK04863 1065 LHARLSANRSRRNQLEKQLTFCEAEMDNLTKKLRKLERDYHEMREQVVNAKAGWCAVLRLVKDNGVERRLHRRELAYLSA 1144 (1486)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHhhhhccCc
Confidence 22222233444445555666666666666666666666666666666666542 113355554333222
Q ss_pred -------HHHHHHHHHHHHHHHHhhhhhhhcccCCC-CCCCccccchHhhHHHHHHHH
Q 002541 693 -------EAARASEKLALAAIKALQESESAQRTDDV-DSPTGVTLSLEEYYELSKRAH 742 (910)
Q Consensus 693 -------EAAKAsEa~Ala~ikaL~e~~~~~~~~~~-~~~~~Itls~eEy~~L~~ka~ 742 (910)
..+--+-+.|++.-..|.+.-..+ .++ .+...|+|-+.=|.-|..|+.
T Consensus 1145 ~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~--~~~~~~e~~~~~~~~~~~~~r~r~r 1200 (1486)
T PRK04863 1145 DELRSMSDKALGALRLAVADNEHLRDVLRLS--EDPKRPERKVQFYIAVYQHLRERIR 1200 (1486)
T ss_pred hhhHHHHHHHHHHHHHhccCcHHHHHHHhhc--cCCCchhHHHhHHHHHHHHHHHHHh
Confidence 111112222222222222211111 122 345678999999999998875
No 48
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=97.72 E-value=0.11 Score=61.81 Aligned_cols=125 Identities=25% Similarity=0.294 Sum_probs=78.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHHH
Q 002541 299 EMPEYRKRSEAAEVAKNQVLKELDQTKRLVEELKLNLERAQTEEHQAKQDSELAKLRVEEMEQGIADDASVAARAQLEVA 378 (910)
Q Consensus 299 eL~k~Keqle~aE~~k~qal~ELe~aKr~ieeL~~kLE~a~~e~~~A~e~sE~ak~r~~ELEqgia~~~~~a~k~eLE~a 378 (910)
+|..++.=+..+..+++++..++...+-.+++|+.+++++......+.++......++-++ ++++..+
T Consensus 93 El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~l------------eAe~~~~ 160 (546)
T KOG0977|consen 93 ELATARKLLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSEL------------EAEINTL 160 (546)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhh------------hhHHHHH
Confidence 3455566666666677777777777777777777777777766655554444333333333 4455556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 379 KARHVAAVSELKSVKDEVESLRKDYASLVTEKDIAVKKAEEAISASKEVEKTVEELTIELIATK 442 (910)
Q Consensus 379 r~q~a~~laEL~svKeELekLrqEl~~l~eeK~~A~k~AeEA~~aak~~eekveeLt~EL~~lK 442 (910)
+.++..+.-++.-++.|..+|..+|..+...++... .-...+.-++..|..+|.-++
T Consensus 161 krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Et-------llr~d~~n~~q~Lleel~f~~ 217 (546)
T KOG0977|consen 161 KRRIKALEDELKRLKAENSRLREELARARKQLDDET-------LLRVDLQNRVQTLLEELAFLK 217 (546)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH-------HHHHHHHhHHHHHHHHHHHHH
Confidence 666777777777777777777777766665555433 344455666666666665554
No 49
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=97.70 E-value=0.29 Score=60.49 Aligned_cols=147 Identities=25% Similarity=0.357 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q 002541 371 ARAQLEVAKARHVAAVSELKSVKDEVESLRKDYASLVTEKDIAVKKAEEAISASKEVEKTVEELTIELIATKESLESA-- 448 (910)
Q Consensus 371 ~k~eLE~ar~q~a~~laEL~svKeELekLrqEl~~l~eeK~~A~k~AeEA~~aak~~eekveeLt~EL~~lKEsLe~a-- 448 (910)
++.+|--+|.....+...-+.-++|+..+..-+.++.-.|.-|..+++-++.....+.+++++|..+|.-||.+.+.-
T Consensus 281 Lqrel~raR~e~keaqe~ke~~k~emad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEILKaEmeekG~ 360 (1243)
T KOG0971|consen 281 LQRELKRARKEAKEAQEAKERYKEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEILKAEMEEKGS 360 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 344444444444444444444455666666666666667777888888888888888888888887777777765431
Q ss_pred --------HHHHHHHHHHHHHHhhhhh--------hhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 002541 449 --------HAAHLEAEEQRIGAAMARD--------QDSHLWEKELKQAEEELQKLTQQILSAKDLRSKLDTASALLLDLK 512 (910)
Q Consensus 449 --------~aa~~eAEe~r~~v~la~e--------qd~~~~e~eL~qaEEEie~Lr~el~~a~dLeakLeea~~~Le~Lk 512 (910)
+-..++-...|+.=++-+= +|-....++++....|+..|++. +.-|..+++.+...+.+|+
T Consensus 361 ~~~~~ss~qfkqlEqqN~rLKdalVrLRDlsA~ek~d~qK~~kelE~k~sE~~eL~r~---kE~Lsr~~d~aEs~iadlk 437 (1243)
T KOG0971|consen 361 DGQAASSYQFKQLEQQNARLKDALVRLRDLSASEKQDHQKLQKELEKKNSELEELRRQ---KERLSRELDQAESTIADLK 437 (1243)
T ss_pred CCcccchHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 1111222222222112111 12223334444444455444443 2467777788888888887
Q ss_pred HHHHHHHH
Q 002541 513 AELSAYME 520 (910)
Q Consensus 513 ~ELa~~lE 520 (910)
..+-+.|-
T Consensus 438 EQVDAAlG 445 (1243)
T KOG0971|consen 438 EQVDAALG 445 (1243)
T ss_pred HHHHHhhc
Confidence 76555443
No 50
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=97.67 E-value=0.27 Score=59.32 Aligned_cols=82 Identities=16% Similarity=0.171 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHH
Q 002541 550 AAVASAKKELEEVKLNIEKATAEVNCLKVAATSLQSELEREKSALAAIRQREGMASVAVASLEAELDRTRSEIALVQMKE 629 (910)
Q Consensus 550 esL~sakkELee~K~~Leka~eEl~sL~~~vesLrsELek~K~ELeelKeke~~a~~eI~sL~eELer~ksELe~~kake 629 (910)
..|-...+++.+++..|......-......+..|+.+|+..+---.++-...+..+.+...+-.+...+..++...++..
T Consensus 443 ~llq~~ekev~dLe~~l~~~~~~eq~yskQVeeLKtELE~EkLKN~ELt~~~nkLslEkk~laQE~~~~~~elKk~qedi 522 (786)
T PF05483_consen 443 GLLQIREKEVHDLEIQLTTIKESEQHYSKQVEELKTELEQEKLKNTELTVNCNKLSLEKKQLAQETSDMALELKKQQEDI 522 (786)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 34555666777777777777766666667778888888877666666666666666666666666666666655554444
Q ss_pred HH
Q 002541 630 KE 631 (910)
Q Consensus 630 ee 631 (910)
..
T Consensus 523 ~~ 524 (786)
T PF05483_consen 523 NN 524 (786)
T ss_pred HH
Confidence 33
No 51
>PRK01156 chromosome segregation protein; Provisional
Probab=97.66 E-value=0.4 Score=60.84 Aligned_cols=28 Identities=14% Similarity=0.098 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 318 LKELDQTKRLVEELKLNLERAQTEEHQA 345 (910)
Q Consensus 318 l~ELe~aKr~ieeL~~kLE~a~~e~~~A 345 (910)
..+|...++.+.++...+..+......+
T Consensus 196 e~eL~~~~~~i~el~~~~~~l~~~i~~~ 223 (895)
T PRK01156 196 NLELENIKKQIADDEKSHSITLKEIERL 223 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444443333333
No 52
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.59 E-value=0.04 Score=67.85 Aligned_cols=226 Identities=21% Similarity=0.291 Sum_probs=112.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 002541 311 EVAKNQVLKELDQTKRLVEELKLNLERAQTEEHQAKQDSELAKLRVEEMEQGIADDASVAARAQLEVAKARHVAAVSELK 390 (910)
Q Consensus 311 E~~k~qal~ELe~aKr~ieeL~~kLE~a~~e~~~A~e~sE~ak~r~~ELEqgia~~~~~a~k~eLE~ar~q~a~~laEL~ 390 (910)
|.+..++..||...+..=+||+.+|.-+......++.++... |.+.|..+.++..+.....
T Consensus 424 E~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~ql-------------------r~ene~Lq~Kl~~L~~aRq 484 (697)
T PF09726_consen 424 EADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQL-------------------RQENEQLQNKLQNLVQARQ 484 (697)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHH
Confidence 333344445555555555666666544433333333222222 2233333345666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 002541 391 SVKDEVESLRKDYASLVTEKDIAVKKAEEAISASKEVEKTVEELTIELIATKESLESAHAAHLEAEEQRIGAAMARDQDS 470 (910)
Q Consensus 391 svKeELekLrqEl~~l~eeK~~A~k~AeEA~~aak~~eekveeLt~EL~~lKEsLe~a~aa~~eAEe~r~~v~la~eqd~ 470 (910)
.-|+.|..|...|.+-...|....++..+-.+..+..+.....--..-...+. +..+ . ...++.+ | |.+.
T Consensus 485 ~DKq~l~~LEkrL~eE~~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~--e~~e-~---~r~r~~~--l--E~E~ 554 (697)
T PF09726_consen 485 QDKQSLQQLEKRLAEERRQRASLEKQLQEERKARKEEEEKAARALAQAQATRQ--ECAE-S---CRQRRRQ--L--ESEL 554 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccchhccc--hhHH-H---HHHHHHH--H--HHHH
Confidence 66777777777777777777777776666665555433322111000000000 0100 0 1111111 2 3355
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHHHHH--HHHHHHHhhhhhhhccccCCCCCCchhhhhhhhH
Q 002541 471 HLWEKELKQAEEELQKLTQQILSAKDL-RSKLDTASALLLDLKA--ELSAYMESKLKEESNEEGHSNGELEEPERKTHTD 547 (910)
Q Consensus 471 ~~~e~eL~qaEEEie~Lr~el~~a~dL-eakLeea~~~Le~Lk~--ELa~~lE~kL~e~~~ei~~lq~~L~E~ek~~~~~ 547 (910)
..+.++|+..++.+..+..++..-+.+ +..-.+.+.++..|.. |-...||+.|..+ ...--+
T Consensus 555 ~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sLsaE---------------triKld 619 (697)
T PF09726_consen 555 KKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAMQDKNQHLENSLSAE---------------TRIKLD 619 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHH---------------HHHHHH
Confidence 566778888888888887776433333 1111223344444443 4455556555522 112245
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 548 IQAAVASAKKELEEVKLNIEKATAEVNCLKVAA 580 (910)
Q Consensus 548 l~esL~sakkELee~K~~Leka~eEl~sL~~~v 580 (910)
|-.+|..++.+|+.+...|..-..||..|+..+
T Consensus 620 LfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki 652 (697)
T PF09726_consen 620 LFSALGDAKRQLEIAQGQLRKKDKEIEELKAKI 652 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555677777777766666666666665555443
No 53
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=97.46 E-value=0.73 Score=58.88 Aligned_cols=46 Identities=15% Similarity=0.128 Sum_probs=25.5
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 293 LERSHEEMPEYRKRSEAAEVAKNQVLKELDQTKRLVEELKLNLERA 338 (910)
Q Consensus 293 L~~~qeeL~k~Keqle~aE~~k~qal~ELe~aKr~ieeL~~kLE~a 338 (910)
...+|.+++.+.+++...+..+..+...+...++.++.+..+...+
T Consensus 489 ~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~ 534 (1317)
T KOG0612|consen 489 KALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNA 534 (1317)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666666666555555555555555554444443
No 54
>PRK11637 AmiB activator; Provisional
Probab=97.41 E-value=0.21 Score=58.19 Aligned_cols=10 Identities=20% Similarity=0.498 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 002541 477 LKQAEEELQK 486 (910)
Q Consensus 477 L~qaEEEie~ 486 (910)
|++.+.+++.
T Consensus 49 l~~l~~qi~~ 58 (428)
T PRK11637 49 LKSIQQDIAA 58 (428)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 55
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=97.34 E-value=0.032 Score=60.28 Aligned_cols=69 Identities=23% Similarity=0.282 Sum_probs=59.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 640 PKQLQVAAQEADQAKSLAQAAGEELHKAKEEAEQAKAGASTIESRLTAARKEIEAARASEKLALAAIKA 708 (910)
Q Consensus 640 ~~eLqqls~EaEeAKkeae~ae~EL~~lkeEaE~aKaeI~taE~rL~aA~KElEAAKAsEa~Ala~ika 708 (910)
..++..+..|...|+.....++.++..+..+.+.+...+.....++......+.+++++-..+++.|.-
T Consensus 88 ~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e 156 (239)
T COG1579 88 ERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIRE 156 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457788888999999999999999999999999999999999999999999998888777777776654
No 56
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.33 E-value=0.21 Score=59.52 Aligned_cols=24 Identities=4% Similarity=0.299 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 387 SELKSVKDEVESLRKDYASLVTEK 410 (910)
Q Consensus 387 aEL~svKeELekLrqEl~~l~eeK 410 (910)
..+..++.++..++.++..+....
T Consensus 174 ~~~~e~~~~i~~l~~~i~~l~~~i 197 (562)
T PHA02562 174 DKIRELNQQIQTLDMKIDHIQQQI 197 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333455555555555555444443
No 57
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=97.30 E-value=0.76 Score=55.70 Aligned_cols=144 Identities=18% Similarity=0.174 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHH----HHHHHHhhhcchH
Q 002541 566 IEKATAEVNCLKVAATSLQSELEREKSALAAIRQREGMASVAVASLEAELDRTRSEIALVQMK----EKEAREKTVELPK 641 (910)
Q Consensus 566 Leka~eEl~sL~~~vesLrsELek~K~ELeelKeke~~a~~eI~sL~eELer~ksELe~~kak----eeeare~~~eL~~ 641 (910)
|..+...+..+...++.|-+-|++.......+..........+..+......+..+++.+... ..+ -.....+..
T Consensus 277 l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e-~~~~~~lek 355 (569)
T PRK04778 277 LDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQSYTLNESE-LESVRQLEK 355 (569)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchh-HHHHHHHHH
Confidence 555666666666666666677777777766666666666666667777777777766666543 111 111223444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002541 642 QLQVAAQEADQAKSLAQAAGEELHKAKEEAEQAKAGASTIESRLTAARKEIEAARASEKLALAAIKALQ 710 (910)
Q Consensus 642 eLqqls~EaEeAKkeae~ae~EL~~lkeEaE~aKaeI~taE~rL~aA~KElEAAKAsEa~Ala~ikaL~ 710 (910)
+|..+..........+.........+..+.+.+...+..++.........+...+..|..|...|..+.
T Consensus 356 eL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~ 424 (569)
T PRK04778 356 QLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYR 424 (569)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555444545455555566666666666666666666666666666666666666665554
No 58
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=97.27 E-value=0.0032 Score=77.71 Aligned_cols=35 Identities=26% Similarity=0.301 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 002541 481 EEELQKLTQQILSAKDLRSKLDTASALLLDLKAEL 515 (910)
Q Consensus 481 EEEie~Lr~el~~a~dLeakLeea~~~Le~Lk~EL 515 (910)
+++...|...+.....++.+|..+......|..++
T Consensus 287 eEe~~sLq~kl~~~E~~~~el~~lq~e~~~Le~el 321 (722)
T PF05557_consen 287 EEEKRSLQRKLERLEELEEELAELQLENEKLEDEL 321 (722)
T ss_dssp -----------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444555555555444444444443
No 59
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.27 E-value=1.1 Score=56.78 Aligned_cols=178 Identities=22% Similarity=0.302 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHH
Q 002541 574 NCLKVAATSLQSELEREKSALAAIRQREGMASVAVASLEAELDRTRSEIALVQMKEKEAREKTVELPKQLQVAAQEADQA 653 (910)
Q Consensus 574 ~sL~~~vesLrsELek~K~ELeelKeke~~a~~eI~sL~eELer~ksELe~~kakeeeare~~~eL~~eLqqls~EaEeA 653 (910)
...+..++.++..+++...+++-++.++..+...+..+ ++++. +. .........|+.+.
T Consensus 803 ~d~~~~ve~~~~~v~~~~~~~~~~~~~e~~~~k~i~e~-~~~e~-k~-------------------k~~~~~~~~e~~e~ 861 (1141)
T KOG0018|consen 803 KDTQRRVERWERSVEDLEKEIEGLKKDEEAAEKIIAEI-EELEK-KN-------------------KSKFEKKEDEINEV 861 (1141)
T ss_pred ccHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHhhH-HHHHH-HH-------------------HHHHHHHHHHHHHH
Confidence 55666777777777777777777777777777777766 55544 11 12334445566666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhhhhcccCCCCCCCccccchH
Q 002541 654 KSLAQAAGEELHKAKEEAEQAKAGASTIESRLTAARKEIEAARASEKLALAAIKA-LQESESAQRTDDVDSPTGVTLSLE 732 (910)
Q Consensus 654 Kkeae~ae~EL~~lkeEaE~aKaeI~taE~rL~aA~KElEAAKAsEa~Ala~ika-L~e~~~~~~~~~~~~~~~Itls~e 732 (910)
+..+..+-.++.++..++-.....|...+.....++. .-.|..|.. |..- +- + +-...| --
T Consensus 862 ~k~~~~~~~~~tkl~~~i~~~es~ie~~~~er~~lL~---------~ckl~~I~vPl~~g-s~----~-d~~~~i---ei 923 (1141)
T KOG0018|consen 862 KKILRRLVKELTKLDKEITSIESKIERKESERHNLLS---------KCKLEDIEVPLSSG-SM----D-DIVIGI---EI 923 (1141)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHH---------HhhhccccccccCC-Cc----c-ccceec---cc
Confidence 6666666666666666666666665555554444432 224455554 2211 10 0 101112 22
Q ss_pred hhHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002541 733 EYYELSKRAHEAEEQANMRVVAAISQIEVAKASELRSLERLEEVNKEIATRKEALKVAMEKAEKAK 798 (910)
Q Consensus 733 Ey~~L~~ka~Eaee~a~kKVa~A~aQvEeAkese~~~l~Kle~~~~Eie~~k~aleeAleraE~Ae 798 (910)
+|..|.+... ++.++......+... +=..+++.+++.+. ...+..+.+.|-..+-.|.
T Consensus 924 dy~~L~~~y~-----L~~kl~e~~~~l~~~-~Pn~kA~~~~d~v~--~~~~~~EfE~ark~ak~ak 981 (1141)
T KOG0018|consen 924 DYSGLPREYK-----LQQKLEEKQSVLNRI-APNLKALERLDEVR--FQEINEEFEAARKEAKKAK 981 (1141)
T ss_pred ccccccHHHH-----HHHHHHHHHHHHHHh-CcchHHHhhhhhHH--HHHhhHHHHHHHHHHHHHH
Confidence 4555555444 444444444444444 33445566666665 4455555665555555555
No 60
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.24 E-value=0.39 Score=57.34 Aligned_cols=35 Identities=14% Similarity=0.202 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002541 568 KATAEVNCLKVAATSLQSELEREKSALAAIRQREG 602 (910)
Q Consensus 568 ka~eEl~sL~~~vesLrsELek~K~ELeelKeke~ 602 (910)
....+...+...+..++..+...+..+..+..+..
T Consensus 327 ~~~~~~~~~~~~i~el~~~i~~~~~~i~~~~~~~~ 361 (562)
T PHA02562 327 EIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAK 361 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444333333
No 61
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=97.24 E-value=0.87 Score=55.06 Aligned_cols=71 Identities=18% Similarity=0.212 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHH
Q 002541 552 VASAKKELEEVKLNIEKATAEVNCLKVAATSLQSELEREKSALAAIRQREGMASVAVASLEAELDRTRSEI 622 (910)
Q Consensus 552 L~sakkELee~K~~Leka~eEl~sL~~~vesLrsELek~K~ELeelKeke~~a~~eI~sL~eELer~ksEL 622 (910)
+..+..|++.++.-|..-.+=...++..+..+..++...+..+..++-...........+..-++.++..+
T Consensus 497 i~~L~sE~~~lk~il~~Kee~Ek~~~E~I~k~~ae~~rq~~~~~~sr~~~~~le~~~~a~qat~d~a~~Dl 567 (961)
T KOG4673|consen 497 ITKLQSEENKLKSILRDKEETEKLLQETIEKHQAELTRQKDYYSNSRALAAALEAQALAEQATNDEARSDL 567 (961)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhH
Confidence 44455555555555544444444555566677777777777777766666666666555555555555543
No 62
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.19 E-value=1.3 Score=55.88 Aligned_cols=245 Identities=18% Similarity=0.222 Sum_probs=118.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHH
Q 002541 549 QAAVASAKKELEEVKLNIEKATAEVNCLKVAATSLQSELEREKSALAAIRQREGMASVAVASLEAELDRTRSEIALVQMK 628 (910)
Q Consensus 549 ~esL~sakkELee~K~~Leka~eEl~sL~~~vesLrsELek~K~ELeelKeke~~a~~eI~sL~eELer~ksELe~~kak 628 (910)
...+..+...+++....+.+...+...|....+.|..++...+..|..+........+++..|...+.....+...++++
T Consensus 793 ~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~e 872 (1174)
T KOG0933|consen 793 EKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAE 872 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHH
Confidence 33344444444444455555555555555555666666666666666666555556666666666666555555555555
Q ss_pred HHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 629 EKEAREKTVELPKQLQVAAQEADQAKSLAQAAGEELHKAKEEAEQAKAGASTIESRLTAARKEIEAARASEKLALAAIKA 708 (910)
Q Consensus 629 eeeare~~~eL~~eLqqls~EaEeAKkeae~ae~EL~~lkeEaE~aKaeI~taE~rL~aA~KElEAAKAsEa~Ala~ika 708 (910)
.......+.+...++..+..+.+....+...++-++.++.-+......+-+.+..++..+.++++= +..-+.
T Consensus 873 l~~~k~k~~~~dt~i~~~~~~~e~~~~e~~~~~l~~kkle~e~~~~~~e~~~~~k~v~~l~~k~~w--------i~~ek~ 944 (1174)
T KOG0933|consen 873 LKDQKAKQRDIDTEISGLLTSQEKCLSEKSDGELERKKLEHEVTKLESEKANARKEVEKLLKKHEW--------IGDEKR 944 (1174)
T ss_pred HHHHHHHHHhhhHHHhhhhhHHHHHHHHhhcccchHHHHHhHHHHhhhhHHHHHHHHHHHHHhccc--------hhHHHH
Confidence 555555555555455444444444444444444444444444444444444444444444433322 111111
Q ss_pred hhhhhhhcccCCCCCCCccccchHhhHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 709 LQESESAQRTDDVDSPTGVTLSLEEYYELSKRAHEAEEQANMRVVAAISQIEVAKASELRSLERLEEVNKEIATRKEALK 788 (910)
Q Consensus 709 L~e~~~~~~~~~~~~~~~Itls~eEy~~L~~ka~Eaee~a~kKVa~A~aQvEeAkese~~~l~Kle~~~~Eie~~k~ale 788 (910)
+-...... -| =.+.+..--.++-..|..+....+...+++ +|.-++.+++-......|.+.+.+.-..++.-..
T Consensus 945 ~fgk~gt~--yD-f~~~~p~~are~l~~Lq~k~~~l~k~vn~~---~m~mle~~E~~~~~lk~k~~~Ie~Dk~kI~ktI~ 1018 (1174)
T KOG0933|consen 945 LFGKKGTD--YD-FESYDPHEAREELKKLQEKKEKLEKTVNPK---NMDMLERAEEKEAALKTKKEIIEKDKSKIKKTIE 1018 (1174)
T ss_pred hhcCCCCc--cc-cccCCHhHHHHHHHHhhHHHHHHHhhcCHH---HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 11110000 00 011222223444455555555555555554 4555666666677766666666654444444333
Q ss_pred HHHHHHHHHhhchhhHHHHHHHHHHHHH
Q 002541 789 VAMEKAEKAKEGKLGIEQELRKWRAEHE 816 (910)
Q Consensus 789 eAleraE~Ae~aK~avE~ELRkwR~e~e 816 (910)
.-.+.- .+.=.+.|+.=+.
T Consensus 1019 ~lDe~k---------~~~L~kaw~~VN~ 1037 (1174)
T KOG0933|consen 1019 KLDEKK---------REELNKAWEKVNK 1037 (1174)
T ss_pred HHHHHH---------HHHHHHHHHHHhh
Confidence 222221 2233567776554
No 63
>PRK11637 AmiB activator; Provisional
Probab=97.18 E-value=0.54 Score=54.86 Aligned_cols=9 Identities=33% Similarity=0.446 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 002541 556 KKELEEVKL 564 (910)
Q Consensus 556 kkELee~K~ 564 (910)
+.+|...+.
T Consensus 179 ~~~L~~~k~ 187 (428)
T PRK11637 179 REELAAQKA 187 (428)
T ss_pred HHHHHHHHH
Confidence 333333333
No 64
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=97.16 E-value=0.6 Score=51.74 Aligned_cols=47 Identities=21% Similarity=0.275 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHH
Q 002541 579 AATSLQSELEREKSALAAIRQREGMASVAVASLEAELDRTRSEIALV 625 (910)
Q Consensus 579 ~vesLrsELek~K~ELeelKeke~~a~~eI~sL~eELer~ksELe~~ 625 (910)
.+..++.........+..++.........+.+|..++..++.....+
T Consensus 196 k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~L 242 (312)
T PF00038_consen 196 KLEELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASL 242 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhh
Confidence 34444444444444444444444444444444444444444443333
No 65
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=97.01 E-value=1.4 Score=53.38 Aligned_cols=107 Identities=20% Similarity=0.282 Sum_probs=60.3
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhhhhh
Q 002541 289 VEQELERSHEEMPEYRKRSEAAEVAKNQVLKELDQTKRLVEELKLNLERAQTEEHQAKQDSELAKLRVEEMEQGIADDAS 368 (910)
Q Consensus 289 ~e~EL~~~qeeL~k~Keqle~aE~~k~qal~ELe~aKr~ieeL~~kLE~a~~e~~~A~e~sE~ak~r~~ELEqgia~~~~ 368 (910)
++..|..+.+.+.+|+ .-.|......+...|..+...+..+...|..+......-....+..+.+++++...
T Consensus 80 ie~~L~~ae~~~~~~r--f~ka~~~i~~~~~~l~~~e~~i~~i~~~l~~L~~~e~~nr~~i~~l~~~y~~lrk~------ 151 (560)
T PF06160_consen 80 IEEQLFEAEEYADKYR--FKKAKQAIKEIEEQLDEIEEDIKEILDELDELLESEEKNREEIEELKEKYRELRKE------ 151 (560)
T ss_pred HHHHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence 3344444444443332 23344445556666666666666666666666666666666666666666666443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 369 VAARAQLEVAKARHVAAVSELKSVKDEVESLRKDYASLVTE 409 (910)
Q Consensus 369 ~a~k~eLE~ar~q~a~~laEL~svKeELekLrqEl~~l~ee 409 (910)
|-.-+..|..++..|+.--.+|+..=.+|..+...
T Consensus 152 ------ll~~~~~~G~a~~~Le~~L~~ie~~F~~f~~lt~~ 186 (560)
T PF06160_consen 152 ------LLAHSFSYGPAIEELEKQLENIEEEFSEFEELTEN 186 (560)
T ss_pred ------HHHhhhhhchhHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 33334467777777766666666555555555444
No 66
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=96.86 E-value=1.9 Score=52.46 Aligned_cols=78 Identities=22% Similarity=0.305 Sum_probs=45.0
Q ss_pred HHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHH
Q 002541 552 VASAKKELEE-------VKLNIEKATAEVNCLKVAATSLQSELEREKSALAAIRQREGMASVAVASLEAELDRTRSEIAL 624 (910)
Q Consensus 552 L~sakkELee-------~K~~Leka~eEl~sL~~~vesLrsELek~K~ELeelKeke~~a~~eI~sL~eELer~ksELe~ 624 (910)
+..++.||+. +..+.....-+-..+.-.+...-.+|...+..+...+.+.......|.+|...-..++.+++.
T Consensus 473 VeeLKtELE~EkLKN~ELt~~~nkLslEkk~laQE~~~~~~elKk~qedi~~~k~qee~~~kqie~Lee~~~~Lrneles 552 (786)
T PF05483_consen 473 VEELKTELEQEKLKNTELTVNCNKLSLEKKQLAQETSDMALELKKQQEDINNSKKQEEKMLKQIENLEETNTQLRNELES 552 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555542 333344444444555555556666666666666666666666666666666666666666666
Q ss_pred HHHHH
Q 002541 625 VQMKE 629 (910)
Q Consensus 625 ~kake 629 (910)
++.+.
T Consensus 553 ~~eel 557 (786)
T PF05483_consen 553 VKEEL 557 (786)
T ss_pred HHHHH
Confidence 55443
No 67
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=96.83 E-value=2.5 Score=53.41 Aligned_cols=75 Identities=9% Similarity=0.134 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHH
Q 002541 553 ASAKKELEEVKLNIEKATAEVNCLKVAATSLQSELEREKSALAAIRQREGMASVAVASLEAELDRTRSEIALVQM 627 (910)
Q Consensus 553 ~sakkELee~K~~Leka~eEl~sL~~~vesLrsELek~K~ELeelKeke~~a~~eI~sL~eELer~ksELe~~ka 627 (910)
..++..++..+..|.....++..+...+..|+..+...-..++.+.++...++..+..|+.+-..+..+|..++.
T Consensus 484 ~el~~~iknlnk~L~~r~~elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~ 558 (1195)
T KOG4643|consen 484 EELLNQIKNLNKSLNNRDLELSRLHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEEENAHLLKQIQSLKT 558 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 334444567788899999999999999999999999999999999999999999999999998888888877765
No 68
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=96.83 E-value=2.3 Score=52.99 Aligned_cols=69 Identities=22% Similarity=0.267 Sum_probs=41.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Q 002541 289 VEQELERSHEEMPEYRKRSEAAEVAKNQVLKELDQTKRLVEELKLNLERAQTEEHQAKQDSELAKLRVEEMEQ 361 (910)
Q Consensus 289 ~e~EL~~~qeeL~k~Keqle~aE~~k~qal~ELe~aKr~ieeL~~kLE~a~~e~~~A~e~sE~ak~r~~ELEq 361 (910)
+...+..++.-+..|+-++...+.+..++.-+..++.-..+.|...|-. ......+++.+..-+++++.
T Consensus 349 l~~~~~ear~~~~q~~~ql~~le~~~~e~q~~~qe~~~e~eqLr~elaq----l~a~r~q~eka~~~~ee~e~ 417 (980)
T KOG0980|consen 349 LENLKEEARRRIEQYENQLLALEGELQEQQREAQENREEQEQLRNELAQ----LLASRTQLEKAQVLVEEAEN 417 (980)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhHHH
Confidence 3444556666677777777777777777777777766666644444333 33334444444444666654
No 69
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=96.83 E-value=0.00029 Score=86.70 Aligned_cols=38 Identities=24% Similarity=0.347 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 376 EVAKARHVAAVSELKSVKDEVESLRKDYASLVTEKDIA 413 (910)
Q Consensus 376 E~ar~q~a~~laEL~svKeELekLrqEl~~l~eeK~~A 413 (910)
++.=..|..=+.++...+.++..|+.+...+++.+..-
T Consensus 314 E~~ve~YKkKLed~~~lk~qvk~Lee~N~~l~e~~~~L 351 (713)
T PF05622_consen 314 ENEVEKYKKKLEDLEDLKRQVKELEEDNAVLLETKAML 351 (713)
T ss_dssp --------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334566667777777777777777777666665443
No 70
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=96.70 E-value=1.5 Score=48.93 Aligned_cols=104 Identities=17% Similarity=0.193 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 002541 551 AVASAKKELEEVKLNIEKATAEVNCLKVAATSLQSELEREKSALAAIRQREGMASVAVASLEAELDRTRSEIALVQMKEK 630 (910)
Q Consensus 551 sL~sakkELee~K~~Leka~eEl~sL~~~vesLrsELek~K~ELeelKeke~~a~~eI~sL~eELer~ksELe~~kakee 630 (910)
.+..+.++|+..+..+ .....+..|..++...+.....+.++......+++..+.++-.+-.+.+.++.+..
T Consensus 139 ~I~~L~k~le~~~k~~--------e~~~~~~el~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkead 210 (294)
T COG1340 139 KIKELRKELEDAKKAL--------EENEKLKELKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEAD 210 (294)
T ss_pred HHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444566665554432 22334445556666666666666666666666666666666666655555544443
Q ss_pred HHHHhhhcchHHHHHHHHHHHHHHHHHHHHHH
Q 002541 631 EAREKTVELPKQLQVAAQEADQAKSLAQAAGE 662 (910)
Q Consensus 631 eare~~~eL~~eLqqls~EaEeAKkeae~ae~ 662 (910)
+.-..+.++......+..+...+...+.+...
T Consensus 211 e~he~~ve~~~~~~e~~ee~~~~~~elre~~k 242 (294)
T COG1340 211 ELHEEFVELSKKIDELHEEFRNLQNELRELEK 242 (294)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333
No 71
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=96.68 E-value=2.7 Score=51.78 Aligned_cols=135 Identities=19% Similarity=0.189 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 002541 551 AVASAKKELEEVKLNIEKATAEVNCLKVAATSLQSELEREKSALAAIRQREGMASVAVASLEAELDRTRSEIALVQMKEK 630 (910)
Q Consensus 551 sL~sakkELee~K~~Leka~eEl~sL~~~vesLrsELek~K~ELeelKeke~~a~~eI~sL~eELer~ksELe~~kakee 630 (910)
-+..++.+|+..+.....+-+++..... -|..+..+.+.+...++..+-++...+..+-+.++.+..+.+.+.+--.
T Consensus 292 lVk~~qeeLd~lkqt~t~a~gdseqatk---ylh~enmkltrqkadirc~LlEarrk~egfddk~~eLEKkrd~al~dvr 368 (1265)
T KOG0976|consen 292 LVKELQEELDTLKQTRTRADGDSEQATK---YLHLENMKLTRQKADIRCALLEARRKAEGFDDKLNELEKKRDMALMDVR 368 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHhhccHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHH
Confidence 3444555555555544444444433332 2333344444444445555555555555555555544444333322111
Q ss_pred HHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 631 EAREKTVELPKQLQVAAQEADQAKSLAQAAGEELHKAKEEAEQAKAGASTIE---SRLTAARKEIEAARASEKLALAAIK 707 (910)
Q Consensus 631 eare~~~eL~~eLqqls~EaEeAKkeae~ae~EL~~lkeEaE~aKaeI~taE---~rL~aA~KElEAAKAsEa~Ala~ik 707 (910)
......+..+.+++.+..+.......|+... .+|....+.-++||---..|++++.
T Consensus 369 ---------------------~i~e~k~nve~elqsL~~l~aerqeQidelKn~if~~e~~~~dhe~~kneL~~a~ekld 427 (1265)
T KOG0976|consen 369 ---------------------SIQEKKENVEEELQSLLELQAERQEQIDELKNHIFRLEQGKKDHEAAKNELQEALEKLD 427 (1265)
T ss_pred ---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHH
Confidence 1111122223333333333333333333332 3445555666777777777777776
Q ss_pred Hh
Q 002541 708 AL 709 (910)
Q Consensus 708 aL 709 (910)
.|
T Consensus 428 ~m 429 (1265)
T KOG0976|consen 428 LM 429 (1265)
T ss_pred HH
Confidence 54
No 72
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.60 E-value=3.5 Score=52.04 Aligned_cols=275 Identities=16% Similarity=0.239 Sum_probs=147.6
Q ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHH---------HHHHHHHHHHHHHHHHHH--------------HHhhHHHHHH
Q 002541 300 MPEYRKRSEAAEVAKNQVL--KELDQTKR---------LVEELKLNLERAQTEEHQ--------------AKQDSELAKL 354 (910)
Q Consensus 300 L~k~Keqle~aE~~k~qal--~ELe~aKr---------~ieeL~~kLE~a~~e~~~--------------A~e~sE~ak~ 354 (910)
|....++|...|.+|..+. ++|+..+| .+.+...+|+++...+.. +...++..+.
T Consensus 193 l~yieerLreLEeEKeeL~~Yqkldk~rr~lEYtiYdrEl~E~~~~l~~le~~r~~~~e~s~~~~~~~~~~~d~~~~~~~ 272 (1200)
T KOG0964|consen 193 LKYIEERLRELEEEKEELEKYQKLDKERRSLEYTIYDRELNEINGELERLEEDRSSAPEESEQYIDALDKVEDESEDLKC 272 (1200)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHhHhhhhhhhhhhHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHHHHh
Confidence 4444445555554444322 34444443 344566666666555333 4444444555
Q ss_pred HHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 355 RVEEMEQGIADDASVAARAQLEVAKARHVAAVSELKSVKDEVESLRKDYASLVTEKDIAVKKAEEAISASKEVEKTVEEL 434 (910)
Q Consensus 355 r~~ELEqgia~~~~~a~k~eLE~ar~q~a~~laEL~svKeELekLrqEl~~l~eeK~~A~k~AeEA~~aak~~eekveeL 434 (910)
.+.+|+..+ ..+..+.+.+..+++..+.....+.=++..|+.+++.-...+..+............+...++...
T Consensus 273 ~i~ele~~l-----~~l~~ekeq~~a~~t~~~k~kt~lel~~kdlq~~i~~n~q~r~~~l~~l~~~~~ki~e~~~EL~~I 347 (1200)
T KOG0964|consen 273 EIKELENKL-----TNLREEKEQLKARETKISKKKTKLELKIKDLQDQITGNEQQRNLALHVLQKVKDKIEEKKDELSKI 347 (1200)
T ss_pred HHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 555554433 335667888888999999999988889999999999988888888887776666666666665555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh---------hhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 002541 435 TIELIATKESLESAHAAHLEAEEQRIGAAMARDQ---------DSHLWEKELKQAEEELQKLTQQILSAKDLRSKLDTAS 505 (910)
Q Consensus 435 t~EL~~lKEsLe~a~aa~~eAEe~r~~v~la~eq---------d~~~~e~eL~qaEEEie~Lr~el~~a~dLeakLeea~ 505 (910)
.-....+.+.-......+...+..+..+ ++..- +...| ...++.+|...|...+..+.. ..
T Consensus 348 ~Pky~~l~~ee~~~~~rl~~l~~~~~~l-~~Kqgr~sqFssk~eRDkw------ir~ei~~l~~~i~~~ke~e~~---lq 417 (1200)
T KOG0964|consen 348 EPKYNSLVDEEKRLKKRLAKLEQKQRDL-LAKQGRYSQFSSKEERDKW------IRSEIEKLKRGINDTKEQENI---LQ 417 (1200)
T ss_pred hhHHHHHHhHHHHHHHHHHHHHHHHHHH-HHhhccccccCcHHHHHHH------HHHHHHHHHHHHhhhhhHHHH---HH
Confidence 5555544444333333332333322221 22111 22334 234455555544433222222 23
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhccccCCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 506 ALLLDLKAELSAYMESKLKEESNEEGHSNGELEEPERKTHTDIQAAVASAKKELEEVKLNIEKATAEVNCLKVAATSLQS 585 (910)
Q Consensus 506 ~~Le~Lk~ELa~~lE~kL~e~~~ei~~lq~~L~E~ek~~~~~l~esL~sakkELee~K~~Leka~eEl~sL~~~vesLrs 585 (910)
..++.+++++.+.++. +.+....|. +....+...-.++.+.+..+......-..+|..-..|++
T Consensus 418 ~e~~~~e~~l~~~~e~-i~~l~~si~---------------e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWREE~~l~~ 481 (1200)
T KOG0964|consen 418 KEIEDLESELKEKLEE-IKELESSIN---------------ETKGRMEEFDAENTELKRELDELQDKRKELWREEKKLRS 481 (1200)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHhhHh---------------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666665554442 111100011 111112223333444455555555556666777777777
Q ss_pred HHHHHHHHHHHHHHHHhhhH
Q 002541 586 ELEREKSALAAIRQREGMAS 605 (910)
Q Consensus 586 ELek~K~ELeelKeke~~a~ 605 (910)
.++..+..|.+.+..+..+.
T Consensus 482 ~i~~~~~dl~~~~~~L~~~~ 501 (1200)
T KOG0964|consen 482 LIANLEEDLSRAEKNLRATM 501 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 77777777777776666543
No 73
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.54 E-value=3.3 Score=51.00 Aligned_cols=139 Identities=14% Similarity=0.193 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHH----------HHHHHHHHHHHH
Q 002541 562 VKLNIEKATAEVNCLKVAATSLQSELEREKSALAAIRQREGMASVAVASLEAELDRTR----------SEIALVQMKEKE 631 (910)
Q Consensus 562 ~K~~Leka~eEl~sL~~~vesLrsELek~K~ELeelKeke~~a~~eI~sL~eELer~k----------sELe~~kakeee 631 (910)
.+..+...+.+|..+....+...+++..++..|.++++++..+.-+.+.|...|.... ++|..+..+...
T Consensus 463 vr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~q~a~~~~~~~~s~L~aa~~~ke~ 542 (1118)
T KOG1029|consen 463 VRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQELNHQLKQKQSAHKETTQRKSELEAARRKKEL 542 (1118)
T ss_pred heeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhccCcchHHHHHHHHHHHHHH
Confidence 3344444445555555555555555555555555555555555555555554444332 223333222221
Q ss_pred HHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhh
Q 002541 632 AREKTVELPKQLQVAAQEADQAKSLAQAAGEELHKAKEEAEQAKAGASTIESRLTAARK-EIEAARASEKLALAAIKALQ 710 (910)
Q Consensus 632 are~~~eL~~eLqqls~EaEeAKkeae~ae~EL~~lkeEaE~aKaeI~taE~rL~aA~K-ElEAAKAsEa~Ala~ikaL~ 710 (910)
+ .+.++..++++.++.+..-.++.-.......+|.........++..-+ +++.-|.+|..++..+..--
T Consensus 543 i----------rq~ikdqldelskE~esk~~eidi~n~qlkelk~~~~~q~lake~~yk~e~d~~ke~et~~lel~~~ke 612 (1118)
T KOG1029|consen 543 I----------RQAIKDQLDELSKETESKLNEIDIFNNQLKELKEDVNSQQLAKEELYKNERDKLKEAETKALELIGEKE 612 (1118)
T ss_pred H----------HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 2 233333333333334444444444444444444444444444444433 55677788888888776644
No 74
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=96.51 E-value=2.2 Score=48.78 Aligned_cols=59 Identities=20% Similarity=0.273 Sum_probs=26.1
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 002541 291 QELERSHEEMPEYRKRSEAAEVAKNQVLKELDQTKRLVEELKLNLERAQTEEHQAKQDS 349 (910)
Q Consensus 291 ~EL~~~qeeL~k~Keqle~aE~~k~qal~ELe~aKr~ieeL~~kLE~a~~e~~~A~e~s 349 (910)
.+|..++.+|.-+..++..+|.++..+.+||..+...-+-....+..++...-.|.++.
T Consensus 81 ~qlr~~rtel~~a~~~k~~~e~er~~~~~El~~~r~e~~~v~~~~~~a~~n~~kAqQ~l 139 (499)
T COG4372 81 PQLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAKAQQEL 139 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444555444443333334444444433333333
No 75
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=96.51 E-value=3.4 Score=50.87 Aligned_cols=97 Identities=13% Similarity=0.164 Sum_probs=57.3
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhhhhhHHHH
Q 002541 293 LERSHEEMPEYRKRSEAAEVAKNQVLKELDQTKRLVEELKLNLERAQTEEHQAKQDSELAKLRVEEMEQGIADDASVAAR 372 (910)
Q Consensus 293 L~~~qeeL~k~Keqle~aE~~k~qal~ELe~aKr~ieeL~~kLE~a~~e~~~A~e~sE~ak~r~~ELEqgia~~~~~a~k 372 (910)
++.+..+|..|...... +.....++.+++.....+.++..+++.+..+........+.+..++.++++.+...+ +.|.
T Consensus 184 ~~~L~~dl~~~~~~~~~-~~~~~~~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~~G-G~~~ 261 (650)
T TIGR03185 184 IDRLAGDLTNVLRRRKK-SELPSSILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRSEG-GDLF 261 (650)
T ss_pred HHHHHHHHHHHHHHHHh-cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-chHH
Confidence 55556666666554332 223456777777777777777777777777777777777777777777776554422 3344
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 002541 373 AQLEVAKARHVAAVSELKS 391 (910)
Q Consensus 373 ~eLE~ar~q~a~~laEL~s 391 (910)
.+.+..+.+...+-.++..
T Consensus 262 ~~r~~Le~ei~~le~e~~e 280 (650)
T TIGR03185 262 EEREQLERQLKEIEAARKA 280 (650)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4333333333333333333
No 76
>PRK09039 hypothetical protein; Validated
Probab=96.50 E-value=0.23 Score=56.50 Aligned_cols=58 Identities=14% Similarity=0.199 Sum_probs=30.5
Q ss_pred HHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHH
Q 002541 632 AREKTVELPKQLQVAAQEADQAKSLAQAAGEELHKAKEEAEQAKAGASTIESRLTAAR 689 (910)
Q Consensus 632 are~~~eL~~eLqqls~EaEeAKkeae~ae~EL~~lkeEaE~aKaeI~taE~rL~aA~ 689 (910)
.+....+....+..+..+++.++..+..++..|..++......+..|..++.+|+.+.
T Consensus 128 ~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~ 185 (343)
T PRK09039 128 EKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVAL 185 (343)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444455566666666666665555555555555555444444444444444443
No 77
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=96.50 E-value=3.4 Score=50.71 Aligned_cols=48 Identities=13% Similarity=0.234 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 379 KARHVAAVSELK-SVKDEVESLRKDYASLVTEKDIAVKKAEEAISASKE 426 (910)
Q Consensus 379 r~q~a~~laEL~-svKeELekLrqEl~~l~eeK~~A~k~AeEA~~aak~ 426 (910)
|.+|+.-+..=. ..++.+..|..++..+..+|.....++.++...+..
T Consensus 13 rd~ya~~lk~e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~e 61 (617)
T PF15070_consen 13 RDQYAQQLKEESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSE 61 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334554443332 235555666666666666666666666655555443
No 78
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=96.47 E-value=3.8 Score=50.93 Aligned_cols=120 Identities=23% Similarity=0.240 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHH
Q 002541 301 PEYRKRSEAAEVAKNQVLKELDQTKRLVEELKLNLERAQTEEHQAKQDSELAKLRVEEMEQGIADDASVAARAQLEVAKA 380 (910)
Q Consensus 301 ~k~Keqle~aE~~k~qal~ELe~aKr~ieeL~~kLE~a~~e~~~A~e~sE~ak~r~~ELEqgia~~~~~a~k~eLE~ar~ 380 (910)
..|..++...+.+..++..+|.+++-..+.|......+... .+..|..+.+ ++.++--.+.
T Consensus 30 ~~~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~----~~~~e~~~~~---------------lr~e~ke~K~ 90 (717)
T PF09730_consen 30 AYLQQRILELENELKQLRQELSNVQAENERLSQLNQELRKE----CEDLELERKR---------------LREEIKEYKF 90 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH---------------HHHHHHHHHH
Confidence 45777888888888888888888888877777665555544 2222222222 2334444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 381 RHVAAVSELKSVKDEVESLRKDYASLVTEKDIAVKKAEEAISASKEVEKTVEELTIELIATKESLESAHAAHLEAEE 457 (910)
Q Consensus 381 q~a~~laEL~svKeELekLrqEl~~l~eeK~~A~k~AeEA~~aak~~eekveeLt~EL~~lKEsLe~a~aa~~eAEe 457 (910)
|-+-.+.+..-..+|--.|++.+..+ +...-..+.|..||-++.+.++..+....++..
T Consensus 91 rE~rll~dyselEeENislQKqvs~L------------------k~sQvefE~~Khei~rl~Ee~~~l~~qlee~~r 149 (717)
T PF09730_consen 91 REARLLQDYSELEEENISLQKQVSVL------------------KQSQVEFEGLKHEIKRLEEEIELLNSQLEEAAR 149 (717)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHH------------------HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555566666676666544 445556667778888888877777776665554
No 79
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=96.41 E-value=0.34 Score=52.50 Aligned_cols=54 Identities=22% Similarity=0.278 Sum_probs=22.9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHH
Q 002541 638 ELPKQLQVAAQEADQAKSLAQAAGEELHKAKEEAEQAKAGASTIESRLTAARKE 691 (910)
Q Consensus 638 eL~~eLqqls~EaEeAKkeae~ae~EL~~lkeEaE~aKaeI~taE~rL~aA~KE 691 (910)
.|..+++.+......+..++..+..++.++..++...+-.+...+..+.++...
T Consensus 93 aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~ 146 (239)
T COG1579 93 ALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEAR 146 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444444444444333333
No 80
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=96.39 E-value=1.7 Score=53.89 Aligned_cols=162 Identities=18% Similarity=0.233 Sum_probs=99.9
Q ss_pred HHHHHHHHHhhHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Q 002541 289 VEQELERSHEEMP-------EYRKRSEAAEVAKNQVLKELDQTKRLVEELKLNLERAQTEEHQAKQDSELAKLRVEEMEQ 361 (910)
Q Consensus 289 ~e~EL~~~qeeL~-------k~Keqle~aE~~k~qal~ELe~aKr~ieeL~~kLE~a~~e~~~A~e~sE~ak~r~~ELEq 361 (910)
++.+|..++-||. +++-|+..-.+.-..+..||...+...++|..+|-.+...+++=++.....+-|+.+...
T Consensus 423 LE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~ 502 (697)
T PF09726_consen 423 LEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEERR 502 (697)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555554 455555555554557888889999999999998888888887777777777777766543
Q ss_pred h-------hhhhhhHHHHHHHHHHHH---------HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 362 G-------IADDASVAARAQLEVAKA---------RHVAAVS-ELKSVKDEVESLRKDYASLVTEKDIAVKKAEEAISAS 424 (910)
Q Consensus 362 g-------ia~~~~~a~k~eLE~ar~---------q~a~~la-EL~svKeELekLrqEl~~l~eeK~~A~k~AeEA~~aa 424 (910)
. +........+++-.++|. .++..++ -......|+.+|+.|+...-+........+.++..--
T Consensus 503 ~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~ 582 (697)
T PF09726_consen 503 QRASLEKQLQEERKARKEEEEKAARALAQAQATRQECAESCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKYE 582 (697)
T ss_pred HHHHHHHHHHHHHHHHhHHHHhhhhccccchhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 111111111111111111 1222111 1123347788888888888888888887776666653
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 425 KEVEKTVEELTIELIATKESLESAHA 450 (910)
Q Consensus 425 k~~eekveeLt~EL~~lKEsLe~a~a 450 (910)
++.....+.|...|.+|++--.+++.
T Consensus 583 ~e~~~~~e~L~~aL~amqdk~~~LE~ 608 (697)
T PF09726_consen 583 KESEKDTEVLMSALSAMQDKNQHLEN 608 (697)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 55777888888888888886555543
No 81
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=96.37 E-value=0.003 Score=78.02 Aligned_cols=35 Identities=26% Similarity=0.258 Sum_probs=19.2
Q ss_pred ccccchHhhHHHHHHHHHHHH---HHhHHHHHHHHhHH
Q 002541 726 GVTLSLEEYYELSKRAHEAEE---QANMRVVAAISQIE 760 (910)
Q Consensus 726 ~Itls~eEy~~L~~ka~Eaee---~a~kKVa~A~aQvE 760 (910)
.+....+++..|..++..++. .+...+.....+++
T Consensus 497 ~~~~~~e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~ 534 (722)
T PF05557_consen 497 SLSSLSEELNELQKEIEELERENERLRQELEELESELE 534 (722)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556777777776666652 33444444444444
No 82
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=96.35 E-value=3.8 Score=49.60 Aligned_cols=65 Identities=20% Similarity=0.315 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHhhhHHHHHhHHHHHHHHHHHH
Q 002541 551 AVASAKKELEEVKLNIEKATAEVNCLKVAATSLQSELEREKSA--------LAAIRQREGMASVAVASLEAELDRTRSEI 622 (910)
Q Consensus 551 sL~sakkELee~K~~Leka~eEl~sL~~~vesLrsELek~K~E--------LeelKeke~~a~~eI~sL~eELer~ksEL 622 (910)
.+.-++.+|+.+...+.. ++..++.|+.+|..++.. +.+....++...+.|..|..++++++.-+
T Consensus 236 ev~lim~eLe~aq~ri~~-------lE~e~e~L~~ql~~~N~~~~~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~ 308 (629)
T KOG0963|consen 236 EVSLIMTELEDAQQRIVF-------LEREVEQLREQLAKANSSKKLAKIDDIDALGSVLNQKDSEIAQLSNDIERLEASL 308 (629)
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhhhhhhhhccCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 344556555555555444 444444555555555443 33445555555666666666666655433
No 83
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=96.35 E-value=0.00092 Score=82.31 Aligned_cols=48 Identities=17% Similarity=0.259 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHH
Q 002541 649 EADQAKSLAQAAGEELHKAKEEAEQAKAGASTIESRLTAARKEIEAAR 696 (910)
Q Consensus 649 EaEeAKkeae~ae~EL~~lkeEaE~aKaeI~taE~rL~aA~KElEAAK 696 (910)
-++.||..+..+.........|+..++..+.+.+.++..+.++++.++
T Consensus 602 ~lekak~vi~~Ld~k~~~~~~e~~~L~~ql~e~~~~i~~lE~~~e~~k 649 (713)
T PF05622_consen 602 YLEKAKEVIKTLDPKQNPSSPEIQALKKQLQEKDRRIESLEKELEKSK 649 (713)
T ss_dssp ------------------------------------------------
T ss_pred HHHHHHHHhhccChhccCChHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 344445544555555444555555566666666666666666665554
No 84
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=96.33 E-value=4.3 Score=50.04 Aligned_cols=53 Identities=23% Similarity=0.283 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh--HHHHHhHHHHHHHHHHHHHHHHHH
Q 002541 576 LKVAATSLQSELEREKSALAAIRQREGMA--SVAVASLEAELDRTRSEIALVQMK 628 (910)
Q Consensus 576 L~~~vesLrsELek~K~ELeelKeke~~a--~~eI~sL~eELer~ksELe~~kak 628 (910)
.+..+..+..++..+..++..+..++..+ ...+..|..++..+..++..++..
T Consensus 389 ~~~~~~~~~~~~~~~e~el~~l~~~l~~~~~~e~i~~l~e~l~~l~~~l~~~~~~ 443 (650)
T TIGR03185 389 LQDAKSQLLKELRELEEELAEVDKKISTIPSEEQIAQLLEELGEAQNELFRSEAE 443 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666666666543 234555555555555555444443
No 85
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.26 E-value=2.7 Score=52.04 Aligned_cols=90 Identities=19% Similarity=0.193 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh-HHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 002541 420 AISASKEVEKTVEELTIELIATKESLESAHAAHLEAEEQRIGAAMARDQDSH-LWEKELKQAEEELQKLTQQILSAKDLR 498 (910)
Q Consensus 420 A~~aak~~eekveeLt~EL~~lKEsLe~a~aa~~eAEe~r~~v~la~eqd~~-~~e~eL~qaEEEie~Lr~el~~a~dLe 498 (910)
+...-+++..++.+...+..-+++.+...+...--.-.+.. .+.+..++. -...+|..+..+.+++..+. ..+.
T Consensus 683 l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg~~~~~~~--~~~q~~e~~~t~~eel~a~~~e~k~l~~~q---~~l~ 757 (970)
T KOG0946|consen 683 LQVENEELEEEVQDFISEHSQLKDQLDLLKNQLGIISSKQR--DLLQGAEASKTQNEELNAALSENKKLENDQ---ELLT 757 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchh--hHHhHHHhccCChHHHHHHHHHHHHHHHHH---HHHH
Confidence 33344455556666656666666655554432211111100 111111211 11346666677777766443 3566
Q ss_pred HHHHHHHHHHHHHHHH
Q 002541 499 SKLDTASALLLDLKAE 514 (910)
Q Consensus 499 akLeea~~~Le~Lk~E 514 (910)
.+|...+...+++++.
T Consensus 758 ~~L~k~~~~~es~k~~ 773 (970)
T KOG0946|consen 758 KELNKKNADIESFKAT 773 (970)
T ss_pred HHHHhhhHHHHHHHHH
Confidence 6666666777777753
No 86
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=96.17 E-value=4.7 Score=48.85 Aligned_cols=47 Identities=19% Similarity=0.241 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHH
Q 002541 572 EVNCLKVAATSLQSELEREKSALAAIRQREGMASVAVASLEAELDRT 618 (910)
Q Consensus 572 El~sL~~~vesLrsELek~K~ELeelKeke~~a~~eI~sL~eELer~ 618 (910)
+...|+..-..+..++.++....+.+..+......-+..|+..+...
T Consensus 391 e~a~Lr~~n~~~~~~~~~~~~~~~el~~~~~~~ke~i~klE~dl~~~ 437 (629)
T KOG0963|consen 391 ENASLRVANSGLSGRITELSKKGEELEAKATEQKELIAKLEQDLLKV 437 (629)
T ss_pred HHHHHhccccccchhHHHHHhhhhhhHHHHHHHHHHHHHHHhhHhhc
Confidence 34444444444444555555555555555555444455555555444
No 87
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.09 E-value=5.6 Score=49.13 Aligned_cols=12 Identities=42% Similarity=0.614 Sum_probs=9.5
Q ss_pred CCCcccchhhhc
Q 002541 153 ALPHTELASIAV 164 (910)
Q Consensus 153 ~~~~~~~~~~~~ 164 (910)
.||+.-||+|-.
T Consensus 225 ~Lpq~~LA~IW~ 236 (1118)
T KOG1029|consen 225 GLPQNQLAHIWT 236 (1118)
T ss_pred CCchhhHhhhee
Confidence 789999998753
No 88
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=96.09 E-value=3.7 Score=47.07 Aligned_cols=120 Identities=18% Similarity=0.268 Sum_probs=83.8
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhhhhhHH
Q 002541 291 QELERSHEEMPEYRKRSEAAEVAKNQVLKELDQTKRLVEELKLNLERAQTEEHQAKQDSELAKLRVEEMEQGIADDASVA 370 (910)
Q Consensus 291 ~EL~~~qeeL~k~Keqle~aE~~k~qal~ELe~aKr~ieeL~~kLE~a~~e~~~A~e~sE~ak~r~~ELEqgia~~~~~a 370 (910)
.+|+.++.+|.-.+.++..++..|..+..|-+.+... |+.+..+++ .
T Consensus 74 fqlddi~~qlr~~rtel~~a~~~k~~~e~er~~~~~E-------l~~~r~e~~--------------------------~ 120 (499)
T COG4372 74 FQLDDIRPQLRALRTELGTAQGEKRAAETEREAARSE-------LQKARQERE--------------------------A 120 (499)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHH--------------------------H
Confidence 4577777777777777777777776666554444332 222222221 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 371 ARAQLEVAKARHVAAVSELKSVKDEVESLRKDYASLVTEKDIAVKKAEEAISASKEVEKTVEELTIELIATKE 443 (910)
Q Consensus 371 ~k~eLE~ar~q~a~~laEL~svKeELekLrqEl~~l~eeK~~A~k~AeEA~~aak~~eekveeLt~EL~~lKE 443 (910)
.+.++..++..|+.+..+|..+..+-+.|+..+..+.+++.....++..+....+++..-++.|..+...|+-
T Consensus 121 v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ~s~~Qlk~~~~~L~~ 193 (499)
T COG4372 121 VRQELAAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQLKSQVLDLKL 193 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666788888888888888888999999888888888888888888878777777777777666554
No 89
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=96.06 E-value=7.5 Score=50.29 Aligned_cols=22 Identities=18% Similarity=0.383 Sum_probs=13.6
Q ss_pred ccccCCCcccHHHHHHhcCCcc
Q 002541 252 LIDTTAPFESVKEVVSKFGGIV 273 (910)
Q Consensus 252 eIDT~aPf~SVK~AvslFGe~~ 273 (910)
....+.|-.+-+.+...+++..
T Consensus 407 ~~ss~~~~~~~~~~~~~~~~~~ 428 (1317)
T KOG0612|consen 407 LLSSSTPLKNEKEANAERSDVD 428 (1317)
T ss_pred hhccCCcccchhhccccccchh
Confidence 3444447777777777776553
No 90
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=95.94 E-value=2.7 Score=44.22 Aligned_cols=118 Identities=17% Similarity=0.225 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Q 002541 577 KVAATSLQSELEREKSALAAIRQREGMASVAVASLEAELDRTRSEIALVQMKEKEAREKTVELPKQLQVAAQEADQAKSL 656 (910)
Q Consensus 577 ~~~vesLrsELek~K~ELeelKeke~~a~~eI~sL~eELer~ksELe~~kakeeeare~~~eL~~eLqqls~EaEeAKke 656 (910)
...++..--.|.-...+|+.+-++...+.+.+..|..+++.+.+.+..+.................|.-+..-+.++...
T Consensus 80 drK~eEVarkL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLkEaE~r 159 (205)
T KOG1003|consen 80 DRKYEEVARKLVIIEGELERAEERAEAAESQSEELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTDKLKEAETR 159 (205)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhh
Confidence 33444445566777778888888888889999999999999999999999888888777777888888888889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHH
Q 002541 657 AQAAGEELHKAKEEAEQAKAGASTIESRLTAARKEIEA 694 (910)
Q Consensus 657 ae~ae~EL~~lkeEaE~aKaeI~taE~rL~aA~KElEA 694 (910)
++.+...++.+..+.+.+.-.+.....++..+.+++..
T Consensus 160 AE~aERsVakLeke~DdlE~kl~~~k~ky~~~~~eLD~ 197 (205)
T KOG1003|consen 160 AEFAERRVAKLEKERDDLEEKLEEAKEKYEEAKKELDE 197 (205)
T ss_pred HHHHHHHHHHHcccHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 99999888888888887777777666666666666654
No 91
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=95.92 E-value=6 Score=48.06 Aligned_cols=224 Identities=16% Similarity=0.164 Sum_probs=134.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHH---HHHHHhhhcchH
Q 002541 565 NIEKATAEVNCLKVAATSLQSELEREKSALAAIRQREGMASVAVASLEAELDRTRSEIALVQMKE---KEAREKTVELPK 641 (910)
Q Consensus 565 ~Leka~eEl~sL~~~vesLrsELek~K~ELeelKeke~~a~~eI~sL~eELer~ksELe~~kake---eeare~~~eL~~ 641 (910)
.|..+...+..+...++.|-+-|+++-..-..+..........+..+....+.+..+++.+...= ..--.....+..
T Consensus 272 ~l~~~~~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e~~~v~~sY~L~~~e~~~~~~l~~ 351 (560)
T PF06160_consen 272 ELDEVEEENEEIEERIDQLYDILEKEVEAKKYVEKNLKELYEYLEHAKEQNKELKEELERVSQSYTLNHNELEIVRELEK 351 (560)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Confidence 45667777777777777788888888888888888888888888888888888888877775320 000112223445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhc-ccCC
Q 002541 642 QLQVAAQEADQAKSLAQAAGEELHKAKEEAEQAKAGASTIESRLTAARKEIEAARASEKLALAAIKALQESESAQ-RTDD 720 (910)
Q Consensus 642 eLqqls~EaEeAKkeae~ae~EL~~lkeEaE~aKaeI~taE~rL~aA~KElEAAKAsEa~Ala~ikaL~e~~~~~-~~~~ 720 (910)
.+..+................-...+..........+..++.........+...+..|..|-..|..+...-... |...
T Consensus 352 ~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~le 431 (560)
T PF06160_consen 352 QLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRLE 431 (560)
T ss_pred HHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666666655555555566666777777777777777777777777777777777777777665321111 1110
Q ss_pred CCCCCccccchHhhHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002541 721 VDSPTGVTLSLEEYYELSKRAHEAEEQANMRVVAAISQIEVAKASELRSLERLEEVNKEIATRKEALKVAMEKAEKAK 798 (910)
Q Consensus 721 ~~~~~~Itls~eEy~~L~~ka~Eaee~a~kKVa~A~aQvEeAkese~~~l~Kle~~~~Eie~~k~aleeAleraE~Ae 798 (910)
...--+| .++|...-.. +...+.....++....--=..+...+..+...|+.....++.....|..++
T Consensus 432 k~nLPGl---p~~y~~~~~~-------~~~~i~~l~~~L~~~pinm~~v~~~l~~a~~~v~~L~~~t~~li~~A~L~E 499 (560)
T PF06160_consen 432 KSNLPGL---PEDYLDYFFD-------VSDEIEELSDELNQVPINMDEVNKQLEEAEDDVETLEEKTEELIDNATLAE 499 (560)
T ss_pred HcCCCCC---CHHHHHHHHH-------HHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0111122 2333322222 222333333333333333345666677777777777777777777777777
No 92
>PRK09039 hypothetical protein; Validated
Probab=95.92 E-value=0.95 Score=51.62 Aligned_cols=70 Identities=9% Similarity=0.056 Sum_probs=37.6
Q ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 637 VELPKQLQVAAQEADQAKSLAQAAGEELHKAKEEAEQAKAGASTIESRLTAARKEIEAARASEKLALAAI 706 (910)
Q Consensus 637 ~eL~~eLqqls~EaEeAKkeae~ae~EL~~lkeEaE~aKaeI~taE~rL~aA~KElEAAKAsEa~Ala~i 706 (910)
........+...++..++.++..++..+..+..++..++....+.+.+|.....++..+.+.+..-|..+
T Consensus 126 ~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~~~~~l~~~ 195 (343)
T PRK09039 126 DSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVALAQRVQELNRY 195 (343)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444444444555555555555555555555555555555566666666666666555544334433
No 93
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=95.91 E-value=1.1 Score=45.16 Aligned_cols=40 Identities=23% Similarity=0.353 Sum_probs=20.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 002541 638 ELPKQLQVAAQEADQAKSLAQAAGEELHKAKEEAEQAKAG 677 (910)
Q Consensus 638 eL~~eLqqls~EaEeAKkeae~ae~EL~~lkeEaE~aKae 677 (910)
.|...++.+..+++.+...+..+...++.+...++.....
T Consensus 77 ~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRk 116 (143)
T PF12718_consen 77 QLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERK 116 (143)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 3444555555555555555555555555555554444443
No 94
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=95.80 E-value=1.4 Score=44.27 Aligned_cols=61 Identities=21% Similarity=0.317 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHH
Q 002541 565 NIEKATAEVNCLKVAATSLQSELEREKSALAAIRQREGMASVAVASLEAELDRTRSEIALV 625 (910)
Q Consensus 565 ~Leka~eEl~sL~~~vesLrsELek~K~ELeelKeke~~a~~eI~sL~eELer~ksELe~~ 625 (910)
.|..+..+.+.+...+.+|..+|+.....+..+...-..+...+..|..++..+..++..+
T Consensus 11 kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L 71 (140)
T PF10473_consen 11 KLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQL 71 (140)
T ss_pred HHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555666666666666655555555555555555555555555555444
No 95
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=95.75 E-value=2.7 Score=48.15 Aligned_cols=177 Identities=24% Similarity=0.306 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHHH-HHHHhhhhhhhhHHHHHHHHHHH
Q 002541 303 YRKRSEAAEVAKNQVLKELDQ-TKRLVEELKLNLERAQTEEHQ-AKQDSELAKLRV-EEMEQGIADDASVAARAQLEVAK 379 (910)
Q Consensus 303 ~Keqle~aE~~k~qal~ELe~-aKr~ieeL~~kLE~a~~e~~~-A~e~sE~ak~r~-~ELEqgia~~~~~a~k~eLE~ar 379 (910)
|..-+..+|...-+..++|.+ -.|.++-|...-+++..+.-- .+-+.|..+.-. +||+.++.- +...+...+..|
T Consensus 339 CERgfAaMEetHQkkiEdLQRqHqRELekLreEKdrLLAEETAATiSAIEAMKnAhrEEmeRELeK--sqSvnsdveaLR 416 (593)
T KOG4807|consen 339 CERGFAAMEETHQKKIEDLQRQHQRELEKLREEKDRLLAEETAATISAIEAMKNAHREEMERELEK--SQSVNSDVEALR 416 (593)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHh--hhccccChHHHH
Confidence 344444555555555555543 234444444444444433211 123444455444 455554432 123455566677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHH
Q 002541 380 ARHVAAVSELKSVKDEVESLRKDYASLVTEKDIAVKKAEEAISASKE-----------VEKTVEELTIELIATKESLESA 448 (910)
Q Consensus 380 ~q~a~~laEL~svKeELekLrqEl~~l~eeK~~A~k~AeEA~~aak~-----------~eekveeLt~EL~~lKEsLe~a 448 (910)
.||- .+|.+|+.||+-|..+|..-.=+-..-.+.+++-..+++. |.+....|.+||..|+..|..-
T Consensus 417 rQyl---eelqsvqRELeVLSEQYSQKCLEnahLaqalEaerqaLRqCQrEnQELnaHNQELnnRLaaEItrLRtlltgd 493 (593)
T KOG4807|consen 417 RQYL---EELQSVQRELEVLSEQYSQKCLENAHLAQALEAERQALRQCQRENQELNAHNQELNNRLAAEITRLRTLLTGD 493 (593)
T ss_pred HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHhccC
Confidence 6774 6889999999999998876544433333333322222222 3334445556666666655431
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 002541 449 HAAHLEAEEQRIGAAMARDQDSHLWEKELKQAEEELQKLTQQIL 492 (910)
Q Consensus 449 ~aa~~eAEe~r~~v~la~eqd~~~~e~eL~qaEEEie~Lr~el~ 492 (910)
--. -+.-++++++..+++--|...+.+|+=|+++|+
T Consensus 494 GgG--------tGsplaqgkdayELEVLLRVKEsEiQYLKqEis 529 (593)
T KOG4807|consen 494 GGG--------TGSPLAQGKDAYELEVLLRVKESEIQYLKQEIS 529 (593)
T ss_pred CCC--------CCCccccCcchhhHHHHHHhhHHHHHHHHHHHH
Confidence 100 011244566666666677777777877777775
No 96
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=95.75 E-value=8.5 Score=48.42 Aligned_cols=247 Identities=25% Similarity=0.261 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002541 384 AAVSELKSVKDEVESLRKDYASLVTEKDIAVKKAEEAISASKEVEKTVEELTIELIATKESLESAHAAHLEAEEQRIGAA 463 (910)
Q Consensus 384 ~~laEL~svKeELekLrqEl~~l~eeK~~A~k~AeEA~~aak~~eekveeLt~EL~~lKEsLe~a~aa~~eAEe~r~~v~ 463 (910)
.+++=++.+..|.-.|+++|+.+...+..+..++..+..+ ||+=+.+.+.+..+-|....++.
T Consensus 14 eav~gwekae~e~~~lk~~l~~~~~~~~~~e~r~~hld~a-----------------Lkec~~qlr~~ree~eq~i~~~~ 76 (769)
T PF05911_consen 14 EAVSGWEKAEAEAASLKQQLEAATQQKLALEDRVSHLDGA-----------------LKECMRQLRQVREEQEQKIHEAV 76 (769)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHH-----------------HHHHHHHHHHhhHHHHHHHHHHH
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHH---HHHHHHhhhhhhhccccCCCCCCch
Q 002541 464 MARDQDSHLWEKELKQAEEELQKLTQQILSAK-DLRSKLDTASALLLDLKAE---LSAYMESKLKEESNEEGHSNGELEE 539 (910)
Q Consensus 464 la~eqd~~~~e~eL~qaEEEie~Lr~el~~a~-dLeakLeea~~~Le~Lk~E---La~~lE~kL~e~~~ei~~lq~~L~E 539 (910)
+ +.-.+..+.+ +|+.+|.+++..|..+..| |...+..+-.
T Consensus 77 ~---------------------~~s~e~e~~~~~le~~l~e~~~~l~~~~~e~~~l~~~l~~~~~--------------- 120 (769)
T PF05911_consen 77 A---------------------KKSKEWEKIKSELEAKLAELSKRLAESAAENSALSKALQEKEK--------------- 120 (769)
T ss_pred H---------------------HHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH---------------
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH-------HHhHH
Q 002541 540 PERKTHTDIQAAVASAKKELEEVKLNIEKATAEVNCLKVAATSLQSELEREKSALAAIRQREGMASVA-------VASLE 612 (910)
Q Consensus 540 ~ek~~~~~l~esL~sakkELee~K~~Leka~eEl~sL~~~vesLrsELek~K~ELeelKeke~~a~~e-------I~sL~ 612 (910)
....+.+....+..++..+...|+.+..+...|+-.+-.|..||+-...+.+-.+.--..+..+ |..|+
T Consensus 121 ----~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~keleir~~E~~~~~~~ae~a~kqhle~vkkiakLE 196 (769)
T PF05911_consen 121 ----LIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVLSKELEIRNEEREYSRRAAEAASKQHLESVKKIAKLE 196 (769)
T ss_pred ----HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHH------------------------------HHHHHHHHH
Q 002541 613 AELDRTRSEIALVQMKEKEAREKTVELPKQLQVAAQEADQA------------------------------KSLAQAAGE 662 (910)
Q Consensus 613 eELer~ksELe~~kakeeeare~~~eL~~eLqqls~EaEeA------------------------------Kkeae~ae~ 662 (910)
+|=+|++. =.|....+ +..|.+++.|++.. .++...+-.
T Consensus 197 aEC~rLr~----------l~rk~lpg-paa~a~mk~ev~~~~~~~~~~r~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 265 (769)
T PF05911_consen 197 AECQRLRA----------LVRKKLPG-PAALAQMKNEVESLGRDSGENRRRRSPSRPSSPHDFSPQNPQKRSKESEFLTE 265 (769)
T ss_pred HHHHHHHH----------HHhccCCC-hHHHHHhHHHHHHhccccccccCCCCCCcccccccccccccccchhhhHHHHH
Q ss_pred HHHHHHHHHHHHHhcHHHHHHHHHHHHHHH--HHHHHH
Q 002541 663 ELHKAKEEAEQAKAGASTIESRLTAARKEI--EAARAS 698 (910)
Q Consensus 663 EL~~lkeEaE~aKaeI~taE~rL~aA~KEl--EAAKAs 698 (910)
.|..+.+|+..+|..+..-..+|+..+-+| .+.|-+
T Consensus 266 ~l~~~eeEnk~Lke~l~~k~~ELq~sr~~~a~ta~kL~ 303 (769)
T PF05911_consen 266 RLQAMEEENKMLKEALAKKNSELQFSRNMYAKTASKLS 303 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 97
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.56 E-value=9.4 Score=47.60 Aligned_cols=73 Identities=23% Similarity=0.296 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 381 RHVAAVSELKSVKDEVESLRKDYASLVTEKDIAVKKAEEA---ISASKEVEKTVEELTIELIATKESLESAHAAHL 453 (910)
Q Consensus 381 q~a~~laEL~svKeELekLrqEl~~l~eeK~~A~k~AeEA---~~aak~~eekveeLt~EL~~lKEsLe~a~aa~~ 453 (910)
.|.....++.-.|-+|..+..-..++....+...-+-++. ....+.+....+.|+.++..-....++.++...
T Consensus 700 ~hsql~~q~~~Lk~qLg~~~~~~~~~~q~~e~~~t~~eel~a~~~e~k~l~~~q~~l~~~L~k~~~~~es~k~~~~ 775 (970)
T KOG0946|consen 700 EHSQLKDQLDLLKNQLGIISSKQRDLLQGAEASKTQNEELNAALSENKKLENDQELLTKELNKKNADIESFKATQR 775 (970)
T ss_pred HHHHHHHHHHHHHHHhcccccchhhHHhHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHh
Confidence 3444444444444444444443334433333222222222 222344444555566666444444455444433
No 98
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=95.51 E-value=8 Score=46.55 Aligned_cols=59 Identities=22% Similarity=0.271 Sum_probs=33.1
Q ss_pred hhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002541 545 HTDIQAAVASAKKE-LEEVKLNIEKATAEVNCLKVAATSLQSELEREKSALAAIRQREGM 603 (910)
Q Consensus 545 ~~~l~esL~sakkE-Lee~K~~Leka~eEl~sL~~~vesLrsELek~K~ELeelKeke~~ 603 (910)
..+++..+...-++ +++....+.....+...|+..+..+.+-+...+..+..+..++..
T Consensus 412 ~~d~k~~V~~~l~el~~ei~~~~~~~~~~~~tLq~~~~~~~~~i~E~~~~l~~~~~el~~ 471 (581)
T KOG0995|consen 412 GVDLKSYVKPLLKELLDEISEELHEAENELETLQEHFSNKASTIEEKIQILGEIELELKK 471 (581)
T ss_pred cccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555554444443 356777777777777777766655555555555554444444443
No 99
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=95.49 E-value=7 Score=45.74 Aligned_cols=28 Identities=7% Similarity=0.202 Sum_probs=12.0
Q ss_pred HHHHHHHHHHhcHHHHHHHHHHHHHHHH
Q 002541 666 KAKEEAEQAKAGASTIESRLTAARKEIE 693 (910)
Q Consensus 666 ~lkeEaE~aKaeI~taE~rL~aA~KElE 693 (910)
.....+......|...+..+.+-+.++.
T Consensus 161 ~~i~~l~~~~~~l~~~~~~iaaeq~~l~ 188 (420)
T COG4942 161 ERIDALKATLKQLAAVRAEIAAEQAELT 188 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444444444444444443
No 100
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=95.23 E-value=11 Score=46.44 Aligned_cols=40 Identities=15% Similarity=0.272 Sum_probs=23.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 546 TDIQAAVASAKKELEEVKLNIEKATAEVNCLKVAATSLQS 585 (910)
Q Consensus 546 ~~l~esL~sakkELee~K~~Leka~eEl~sL~~~vesLrs 585 (910)
..+...|..+..+|..++..+.....++..++...+.+-+
T Consensus 198 keL~~kl~~l~~~l~~~~e~le~K~qE~~~Lq~q~dq~~~ 237 (617)
T PF15070_consen 198 KELQKKLGELQEKLHNLKEKLELKSQEAQSLQEQRDQYLG 237 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 3455556666666666666666666666666654443333
No 101
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=95.19 E-value=3.4 Score=40.80 Aligned_cols=43 Identities=23% Similarity=0.462 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 381 RHVAAVSELKSVKDEVESLRKDYASLVTEKDIAVKKAEEAISA 423 (910)
Q Consensus 381 q~a~~laEL~svKeELekLrqEl~~l~eeK~~A~k~AeEA~~a 423 (910)
.|+.++..|..++.++..++.++..+....+.+..........
T Consensus 53 ~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~s 95 (132)
T PF07926_consen 53 KHAEDIKELQQLREELQELQQEINELKAEAESAKAELEESEAS 95 (132)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5999999999999999999999999999998888877665544
No 102
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=95.12 E-value=2.1 Score=43.03 Aligned_cols=54 Identities=13% Similarity=0.257 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 002541 553 ASAKKELEEVKLNIEKATAEVNCLKVAATSLQSELEREKSALAAIRQREGMASV 606 (910)
Q Consensus 553 ~sakkELee~K~~Leka~eEl~sL~~~vesLrsELek~K~ELeelKeke~~a~~ 606 (910)
..+...+..+.........+|.+|+..+..|..+|+.+...|..++........
T Consensus 17 e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~ 70 (143)
T PF12718_consen 17 EELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEK 70 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 345555555556666666777777777777777777777777777666665543
No 103
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=95.09 E-value=11 Score=45.45 Aligned_cols=35 Identities=20% Similarity=0.234 Sum_probs=23.7
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 486 KLTQQILSAKDLRSKLDTASALLLDLKAELSAYME 520 (910)
Q Consensus 486 ~Lr~el~~a~dLeakLeea~~~Le~Lk~ELa~~lE 520 (910)
.+...+....+++..++-+...+...+.|+..|-.
T Consensus 208 ~~~~~l~~~~e~~~~l~l~~~~~~~~~~el~~Yk~ 242 (511)
T PF09787_consen 208 HYIEYLRESGELQEQLELLKAEGESEEAELQQYKQ 242 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 33344444467777777777777777878877764
No 104
>PF13514 AAA_27: AAA domain
Probab=94.94 E-value=18 Score=47.44 Aligned_cols=42 Identities=17% Similarity=0.256 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHH
Q 002541 775 EVNKEIATRKEALKVAMEKAEKAKEGKLGIEQELRKWRAEHE 816 (910)
Q Consensus 775 ~~~~Eie~~k~aleeAleraE~Ae~aK~avE~ELRkwR~e~e 816 (910)
.+..+++..+..+.+..++--...-+...++..+.++|.++.
T Consensus 937 ~l~~e~e~~~a~l~~~~~~~~~~~la~~lL~~a~~~~r~~~~ 978 (1111)
T PF13514_consen 937 ELEQEREEAEAELEELAEEWAALRLAAELLEEAIERYREERQ 978 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344555566666666666655666677778888888887643
No 105
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=94.86 E-value=8.4 Score=43.14 Aligned_cols=56 Identities=23% Similarity=0.295 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 391 SVKDEVESLRKDYASLVTEKDIAVKKAEEAISASKEVEKTVEELTIELIATKESLE 446 (910)
Q Consensus 391 svKeELekLrqEl~~l~eeK~~A~k~AeEA~~aak~~eekveeLt~EL~~lKEsLe 446 (910)
..-..+..++....++...++....++.+.......+-.++.+|..++..+++..+
T Consensus 45 eln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~~~l~e~~~ 100 (294)
T COG1340 45 ELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQELRKEYRELKEKRN 100 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455555666666667777777777777777777777777777777766666555
No 106
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=94.36 E-value=20 Score=45.25 Aligned_cols=73 Identities=19% Similarity=0.277 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 372 RAQLEVAKARHVAAVSELKSVKDEVESLRKDYASLVTEKDIAVKKAEEAISASKEVEKTVEELTIELIATKES 444 (910)
Q Consensus 372 k~eLE~ar~q~a~~laEL~svKeELekLrqEl~~l~eeK~~A~k~AeEA~~aak~~eekveeLt~EL~~lKEs 444 (910)
+.+++.++.-+......--..++..++++..|..+.......+.+-.+..+.+...+.-..++..+...+.+.
T Consensus 402 r~q~eka~~~~ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~ 474 (980)
T KOG0980|consen 402 RTQLEKAQVLVEEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQ 474 (980)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3344444333333333333444555555555555555555554444444444443333333333333333333
No 107
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=94.22 E-value=23 Score=45.49 Aligned_cols=22 Identities=27% Similarity=0.330 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 002541 769 SLERLEEVNKEIATRKEALKVA 790 (910)
Q Consensus 769 ~l~Kle~~~~Eie~~k~aleeA 790 (910)
.+.++.....+++..+..++.+
T Consensus 717 ~~~~l~~~~~~~~~~~~~~~~~ 738 (908)
T COG0419 717 LIEELESRKAELEELKKELEKL 738 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444433333333
No 108
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=94.02 E-value=15 Score=43.52 Aligned_cols=153 Identities=18% Similarity=0.210 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHH
Q 002541 551 AVASAKKELEEVKLNIEKATAEVNCLKVAA---------------TSLQSELEREKSALAAIRQREGMASVAVASLEAEL 615 (910)
Q Consensus 551 sL~sakkELee~K~~Leka~eEl~sL~~~v---------------esLrsELek~K~ELeelKeke~~a~~eI~sL~eEL 615 (910)
.+..+..++..++.++..+...+..++..+ ..++.+|...+.++..+..++....-.+..+..++
T Consensus 205 ~l~~l~~~l~~~~~~l~~~~a~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~l~~~y~~~hP~v~~l~~qi 284 (498)
T TIGR03007 205 EISEAQEELEAARLELNEAIAQRDALKRQLGGEEPVLLAGSSVANSELDGRIEALEKQLDALRLRYTDKHPDVIATKREI 284 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCcccccCCCchHHHHHHHHHHHHHHHHHhcccChHHHHHHHHH
Confidence 344555555555555555555555555432 36777888888888888888888888888888887
Q ss_pred HHHHHHHHHHHHHHHH--HHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcH---HHHHHHHHHHHH
Q 002541 616 DRTRSEIALVQMKEKE--AREKTVELPKQLQVAAQEADQAKSLAQAAGEELHKAKEEAEQAKAGA---STIESRLTAARK 690 (910)
Q Consensus 616 er~ksELe~~kakeee--are~~~eL~~eLqqls~EaEeAKkeae~ae~EL~~lkeEaE~aKaeI---~taE~rL~aA~K 690 (910)
..++..+......... ..... ...-++.+...+..++.+...++.++..+..+....+..+ ...+.++....+
T Consensus 285 ~~l~~~l~~~~~~~~~~~~~~~~--~~~~~~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~el~~L~R 362 (498)
T TIGR03007 285 AQLEEQKEEEGSAKNGGPERGEI--ANPVYQQLQIELAEAEAEIASLEARVAELTARIERLESLLRTIPEVEAELTQLNR 362 (498)
T ss_pred HHHHHHHHhhccccccCcccccc--cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHH
Confidence 7777765433211000 00000 0111233333444444444444444444444444444332 344556666666
Q ss_pred HHHHHHHHHHHHHHH
Q 002541 691 EIEAARASEKLALAA 705 (910)
Q Consensus 691 ElEAAKAsEa~Ala~ 705 (910)
+++.++..=...+..
T Consensus 363 e~~~~~~~Y~~l~~r 377 (498)
T TIGR03007 363 DYEVNKSNYEQLLTR 377 (498)
T ss_pred HHHHHHHHHHHHHHH
Confidence 665554433333333
No 109
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=93.92 E-value=22 Score=44.18 Aligned_cols=159 Identities=16% Similarity=0.165 Sum_probs=92.8
Q ss_pred HHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002541 632 AREKTVELPKQLQVAAQEADQAKSLAQAAGEELHKAKEEAEQAKAGASTIESRLTAARKEIEAARASEKLALAAIKALQE 711 (910)
Q Consensus 632 are~~~eL~~eLqqls~EaEeAKkeae~ae~EL~~lkeEaE~aKaeI~taE~rL~aA~KElEAAKAsEa~Ala~ikaL~e 711 (910)
......++...+.++-.++.+. ....-++..+...+.....++...+......+...+++.......|+.|.+
T Consensus 459 ~gsA~ed~Qeqn~kL~~el~ek-------dd~nfklm~e~~~~~q~~k~L~~ek~~l~~~i~~l~~~~~~~~~~i~~lee 531 (698)
T KOG0978|consen 459 IGSAFEDMQEQNQKLLQELREK-------DDKNFKLMSERIKANQKHKLLREEKSKLEEQILTLKASVDKLELKIGKLEE 531 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555554443 333344455555666666666777777777777778888888888888776
Q ss_pred hhhhcccCCCCCCCccccchHhhHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 712 SESAQRTDDVDSPTGVTLSLEEYYELSKRAHEAEEQANMRVVAAISQIEVAKASELRSLERLEEVNKEIATRKEALKVAM 791 (910)
Q Consensus 712 ~~~~~~~~~~~~~~~Itls~eEy~~L~~ka~Eaee~a~kKVa~A~aQvEeAkese~~~l~Kle~~~~Eie~~k~aleeAl 791 (910)
..-.-.. .. +++ ..|-. .....-+...+++..+...++..+..-.....+|+.++..+.+...+++.-.
T Consensus 532 q~~~lt~---~~-~~l---~~el~----~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~ 600 (698)
T KOG0978|consen 532 QERGLTS---NE-SKL---IKELT----TLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEK 600 (698)
T ss_pred HHHHhhH---hh-hhh---HHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4332110 00 000 11111 1223334555666666666677777777777777777777777777777666
Q ss_pred HHHHHHhhchhhHHHHHHHHHHHH
Q 002541 792 EKAEKAKEGKLGIEQELRKWRAEH 815 (910)
Q Consensus 792 eraE~Ae~aK~avE~ELRkwR~e~ 815 (910)
.+.-.++ .|+-+++-+-
T Consensus 601 ~k~~rle-------EE~e~L~~kl 617 (698)
T KOG0978|consen 601 FKRKRLE-------EELERLKRKL 617 (698)
T ss_pred HHHHHHH-------HHHHHHHHHH
Confidence 6666555 6666666543
No 110
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=93.90 E-value=14 Score=41.82 Aligned_cols=51 Identities=25% Similarity=0.284 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHH
Q 002541 642 QLQVAAQEADQAKSLAQAAGEELHKAKEEAEQAKAGASTIESRLTAARKEI 692 (910)
Q Consensus 642 eLqqls~EaEeAKkeae~ae~EL~~lkeEaE~aKaeI~taE~rL~aA~KEl 692 (910)
+|..++.++......+...+.++..++.+.......|.....+...++.++
T Consensus 210 eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI 260 (325)
T PF08317_consen 210 ELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEI 260 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444444444444444444443333
No 111
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=93.81 E-value=23 Score=44.03 Aligned_cols=88 Identities=18% Similarity=0.214 Sum_probs=56.1
Q ss_pred cccHHHHHHhcCCccc----------ccccccchH--HHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 259 FESVKEVVSKFGGIVD----------WKAHRMQTV--ERRKYVEQELERSHEEMPEYRKRSEAAEVAKNQVLKELDQTKR 326 (910)
Q Consensus 259 f~SVK~AvslFGe~~~----------~K~~r~~~~--ER~~~~e~EL~~~qeeL~k~Keqle~aE~~k~qal~ELe~aKr 326 (910)
+.|=+++++.|++..| |+.++..-. .-...+..+-+++|..+..+.+..-.........++-+.-.--
T Consensus 11 i~~~~~~~~~~~~~~D~lq~~~e~~~~~~~~~~e~l~~~~~~L~~e~e~Lq~~~~~~~~~~~~~~~~~~el~~k~s~~~~ 90 (698)
T KOG0978|consen 11 IKSEKEAVSLVLIQIDDLQTQAEELARRLNRVEEALTVLFDELAEENEKLQNLADHLQEKHATLSEQISELLDKISTAET 90 (698)
T ss_pred HHhhhhhhcccchhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4567888888887765 443220000 0112345556777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 002541 327 LVEELKLNLERAQTEEHQAK 346 (910)
Q Consensus 327 ~ieeL~~kLE~a~~e~~~A~ 346 (910)
.++++...|+.++-+...-.
T Consensus 91 ~~~e~~~~le~~~~d~eki~ 110 (698)
T KOG0978|consen 91 EVDELEQQLEDLQADLEKIR 110 (698)
T ss_pred cHHHHHHhHHHHHHHHHHHH
Confidence 77778877777777644433
No 112
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=93.73 E-value=14 Score=42.18 Aligned_cols=20 Identities=20% Similarity=0.144 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 002541 651 DQAKSLAQAAGEELHKAKEE 670 (910)
Q Consensus 651 EeAKkeae~ae~EL~~lkeE 670 (910)
..++.....++.++..++.+
T Consensus 206 ~~~~~~l~~~~~~l~~~~~~ 225 (423)
T TIGR01843 206 AEAQGELGRLEAELEVLKRQ 225 (423)
T ss_pred HHHHhHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 113
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=93.57 E-value=1.9 Score=49.65 Aligned_cols=75 Identities=17% Similarity=0.225 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 002541 564 LNIEKATAEVNCLKVAATSLQSELEREKSALAAIRQREGMASVAVASLEAELDRTRSEIALVQMKEKEAREKTVE 638 (910)
Q Consensus 564 ~~Leka~eEl~sL~~~vesLrsELek~K~ELeelKeke~~a~~eI~sL~eELer~ksELe~~kakeeeare~~~e 638 (910)
..|++.......|...++.|..++...+..|..++++++.++..|..+..+|.++..+|+.++....+-...|.|
T Consensus 252 ~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emeerg~~mtD 326 (359)
T PF10498_consen 252 KTLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEERGSSMTD 326 (359)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 444555555566667888888999999999999999999999999999999999999998888877766666665
No 114
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=93.26 E-value=24 Score=42.46 Aligned_cols=16 Identities=13% Similarity=0.067 Sum_probs=8.4
Q ss_pred HhhhcchHHHHHHHHH
Q 002541 634 EKTVELPKQLQVAAQE 649 (910)
Q Consensus 634 e~~~eL~~eLqqls~E 649 (910)
+.+.++|.....+...
T Consensus 436 ~nLPGlPe~~l~l~~~ 451 (570)
T COG4477 436 SNLPGLPETFLSLFFT 451 (570)
T ss_pred cCCCCCcHHHHHHHHh
Confidence 4445666655554443
No 115
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=93.24 E-value=21 Score=41.87 Aligned_cols=33 Identities=15% Similarity=0.303 Sum_probs=16.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHhhhcch
Q 002541 608 VASLEAELDRTRSEIALVQMKEKEAREKTVELP 640 (910)
Q Consensus 608 I~sL~eELer~ksELe~~kakeeeare~~~eL~ 640 (910)
...|..++..-+..++.+...+...+..+..+.
T Consensus 212 ~~~l~~~l~~~q~~l~eL~~~~~~L~~~Ias~e 244 (420)
T COG4942 212 LAQLNSELSADQKKLEELRANESRLKNEIASAE 244 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 344445555555555555555544444443333
No 116
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=93.13 E-value=13 Score=39.25 Aligned_cols=130 Identities=25% Similarity=0.341 Sum_probs=79.5
Q ss_pred HHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH---HHHHHhhHHHHHHHHHHH
Q 002541 284 ERRKYVEQELERSHEEMPEYRKRSEAAEVAKNQVLKELDQTKRLVEELKLNLE-RAQTE---EHQAKQDSELAKLRVEEM 359 (910)
Q Consensus 284 ER~~~~e~EL~~~qeeL~k~Keqle~aE~~k~qal~ELe~aKr~ieeL~~kLE-~a~~e---~~~A~e~sE~ak~r~~EL 359 (910)
.|...++.+|+.+|+-+..+..++..++. +..|-++..+.|+.-..+++ +.... ..-|+.-.+-+-..+.+.
T Consensus 11 rri~~leeele~aqErl~~a~~KL~Eaeq----~~dE~er~~Kv~enr~~kdEE~~e~~e~qLkEAk~iaE~adrK~eEV 86 (205)
T KOG1003|consen 11 RRIQLLEEELDRAQERLATALQKLEEAEQ----AADESERGMKVIENRAQKLEEKMEAQEAQLKEAKHIAEKADRKYEEV 86 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh----cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56678899999999999999999988864 44566667777776666664 33333 333333333344444443
Q ss_pred HhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 360 EQGIADDASVAARAQLEVAKARHVAAVSELKSVKDEVESLRKDYASLVTEKDIAVKKAEEAIS 422 (910)
Q Consensus 360 Eqgia~~~~~a~k~eLE~ar~q~a~~laEL~svKeELekLrqEl~~l~eeK~~A~k~AeEA~~ 422 (910)
-..+ +..-.+|+.+-.+-.........+-+++.-+...+.++.-.-..+.++.+....
T Consensus 87 arkL-----~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~ 144 (205)
T KOG1003|consen 87 ARKL-----VIIEGELERAEERAEAAESQSEELEEDLRILDSNLKSLSAKEEKLEQKEEKYEE 144 (205)
T ss_pred HHHH-----HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHH
Confidence 3222 233456777776666666666666677777766666665555444444433333
No 117
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=92.78 E-value=29 Score=42.08 Aligned_cols=56 Identities=11% Similarity=0.057 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002541 547 DIQAAVASAKKELEEVKLNIEKATAEVNCLKVAATSLQSELEREKSALAAIRQREG 602 (910)
Q Consensus 547 ~l~esL~sakkELee~K~~Leka~eEl~sL~~~vesLrsELek~K~ELeelKeke~ 602 (910)
.+..-+.....++.+....+.....-++.+...+..+++.|.....++..+-.++.
T Consensus 422 ~l~el~~ei~~~~~~~~~~~~tLq~~~~~~~~~i~E~~~~l~~~~~el~~~~~~~~ 477 (581)
T KOG0995|consen 422 LLKELLDEISEELHEAENELETLQEHFSNKASTIEEKIQILGEIELELKKAESKYE 477 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555555555555555555555555555555555444333
No 118
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=92.32 E-value=12 Score=38.60 Aligned_cols=116 Identities=20% Similarity=0.232 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHH
Q 002541 564 LNIEKATAEVNCLKVAATSLQSELEREKSALAAIRQREGMASVAVASLEAELDRTRSEIALVQMKEKEAREKTVELPKQL 643 (910)
Q Consensus 564 ~~Leka~eEl~sL~~~vesLrsELek~K~ELeelKeke~~a~~eI~sL~eELer~ksELe~~kakeeeare~~~eL~~eL 643 (910)
..++..+.+|..+- +..|.|++..+.+|..++.........++.|...-...+..|..+...-..
T Consensus 9 ~~ie~sK~qIf~I~---E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f~~------------ 73 (159)
T PF05384_consen 9 DTIESSKEQIFEIA---EQARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNFDR------------ 73 (159)
T ss_pred HHHHhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc------------
Confidence 34556666666554 677899999999999999999999999999999999999988766432110
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHH
Q 002541 644 QVAAQEADQAKSLAQAAGEELHKAKEEAEQAKAGASTIESRLTAARKEIEAA 695 (910)
Q Consensus 644 qqls~EaEeAKkeae~ae~EL~~lkeEaE~aKaeI~taE~rL~aA~KElEAA 695 (910)
=...++.+|=..+..++-+|.-+++.-.+++..-+.+|.+|..+..-++.|
T Consensus 74 -ysE~dik~AYe~A~~lQ~~L~~~re~E~qLr~rRD~LErrl~~l~~tierA 124 (159)
T PF05384_consen 74 -YSEEDIKEAYEEAHELQVRLAMLREREKQLRERRDELERRLRNLEETIERA 124 (159)
T ss_pred -cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 012345555566777788888888888888888888888888888877764
No 119
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=92.31 E-value=21 Score=40.72 Aligned_cols=34 Identities=18% Similarity=0.107 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHH
Q 002541 651 DQAKSLAQAAGEELHKAKEEAEQAKAGASTIESR 684 (910)
Q Consensus 651 EeAKkeae~ae~EL~~lkeEaE~aKaeI~taE~r 684 (910)
..++.....++.++..++.+...++..+..++..
T Consensus 199 ~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~ 232 (423)
T TIGR01843 199 LELERERAEAQGELGRLEAELEVLKRQIDELQLE 232 (423)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444333
No 120
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=92.24 E-value=39 Score=42.39 Aligned_cols=46 Identities=11% Similarity=0.094 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHH
Q 002541 578 VAATSLQSELEREKSALAAIRQREGMASVAVASLEAELDRTRSEIA 623 (910)
Q Consensus 578 ~~vesLrsELek~K~ELeelKeke~~a~~eI~sL~eELer~ksELe 623 (910)
..+..|+.++.....++..+..++....-.+..+..++..++..+.
T Consensus 288 ~~i~~L~~~l~~l~~~~~~l~~~y~~~hP~v~~l~~qi~~l~~~i~ 333 (754)
T TIGR01005 288 DLIQRLRERQAELRATIADLSTTMLANHPRVVAAKSSLADLDAQIR 333 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHH
Confidence 3455666677777777777766666666666666666666666553
No 121
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=92.24 E-value=24 Score=39.90 Aligned_cols=90 Identities=19% Similarity=0.193 Sum_probs=61.6
Q ss_pred HHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 002541 598 RQREGMASVAVASLEAELDRTRSEIALVQMKEKEAREKTVELPKQLQVAAQEADQAKSLAQAAGEELHKAKEEAEQAKAG 677 (910)
Q Consensus 598 Keke~~a~~eI~sL~eELer~ksELe~~kakeeeare~~~eL~~eLqqls~EaEeAKkeae~ae~EL~~lkeEaE~aKae 677 (910)
-.++..+...|..|.++|.+...+...-+..+......+.++...++++..|.+++...+...+.-=..+ .++
T Consensus 205 v~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L-------~aE 277 (306)
T PF04849_consen 205 VKQLSEANQQIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQL-------QAE 277 (306)
T ss_pred HHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH-------HHH
Confidence 3566777888888888888888888887787777788888888888888888777766655544433333 334
Q ss_pred HHHHHHHHHHHHHHHHH
Q 002541 678 ASTIESRLTAARKEIEA 694 (910)
Q Consensus 678 I~taE~rL~aA~KElEA 694 (910)
+.+++.|+.....++..
T Consensus 278 L~elqdkY~E~~~mL~E 294 (306)
T PF04849_consen 278 LQELQDKYAECMAMLHE 294 (306)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45555555554444433
No 122
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.19 E-value=22 Score=39.41 Aligned_cols=51 Identities=16% Similarity=0.332 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 549 QAAVASAKKELEEVKLNIEKATAEVNCLKVAATSLQSELEREKSALAAIRQ 599 (910)
Q Consensus 549 ~esL~sakkELee~K~~Leka~eEl~sL~~~vesLrsELek~K~ELeelKe 599 (910)
+..+..+.++|+.+-..+..+...+..++..+..++.++...+.++..+++
T Consensus 44 ~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~ 94 (265)
T COG3883 44 QKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKE 94 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444444444444444444444433
No 123
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=92.19 E-value=38 Score=42.05 Aligned_cols=126 Identities=18% Similarity=0.202 Sum_probs=61.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccCCCCCCchhhhhhhhHHH
Q 002541 470 SHLWEKELKQAEEELQKLTQQILSAKDLRSKLDTASALLLDLKAELSAYMESKLKEESNEEGHSNGELEEPERKTHTDIQ 549 (910)
Q Consensus 470 ~~~~e~eL~qaEEEie~Lr~el~~a~dLeakLeea~~~Le~Lk~ELa~~lE~kL~e~~~ei~~lq~~L~E~ek~~~~~l~ 549 (910)
...|+.+-....+.++.|.++=. .|.+.++-....+.+|..=| .-.|..|..-..--..++..-...-......-.
T Consensus 237 ~~~we~Er~~L~~tVq~L~edR~---~L~~T~ELLqVRvqSLt~IL-~LQEeEL~~Kvqp~d~Le~e~~~K~q~LL~~WR 312 (739)
T PF07111_consen 237 SQAWEPEREELLETVQHLQEDRD---ALQATAELLQVRVQSLTDIL-TLQEEELCRKVQPSDPLEPEFSRKCQQLLSRWR 312 (739)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH-HHHHHHHhccCCCCCCCCchhHHHHHHHHHHHH
Confidence 45788888888888888887643 67777776666666665422 222222221000001111110111111122224
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002541 550 AAVASAKKELEEVKLNIEKATAEVNCLKVAATSLQSELEREKSALAAIRQREG 602 (910)
Q Consensus 550 esL~sakkELee~K~~Leka~eEl~sL~~~vesLrsELek~K~ELeelKeke~ 602 (910)
+++-.+.-.|......+ .+.+..++..|.+|..++.....+-.-+..-+.
T Consensus 313 EKVFaLmVQLkaQeleh---~~~~~qL~~qVAsLQeev~sq~qEqaiLq~SLq 362 (739)
T PF07111_consen 313 EKVFALMVQLKAQELEH---RDSVKQLRGQVASLQEEVASQQQEQAILQHSLQ 362 (739)
T ss_pred HHHHHHHHHhhHHHHHh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555555554444332 333444566666666666666555555544443
No 124
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=92.13 E-value=13 Score=36.66 Aligned_cols=14 Identities=14% Similarity=0.245 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHHH
Q 002541 584 QSELEREKSALAAI 597 (910)
Q Consensus 584 rsELek~K~ELeel 597 (910)
+.+|.........+
T Consensus 30 ~~dl~~q~~~a~~A 43 (132)
T PF07926_consen 30 REDLESQAKIAQEA 43 (132)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 125
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=91.95 E-value=11 Score=42.62 Aligned_cols=27 Identities=15% Similarity=0.226 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 571 AEVNCLKVAATSLQSELEREKSALAAI 597 (910)
Q Consensus 571 eEl~sL~~~vesLrsELek~K~ELeel 597 (910)
..+..++..+..|+..+..++.++..+
T Consensus 165 ~~~~~l~~~~~~l~~~~~~L~~e~~~L 191 (312)
T smart00787 165 KELELLNSIKPKLRDRKDALEEELRQL 191 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444443
No 126
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=91.82 E-value=26 Score=39.40 Aligned_cols=26 Identities=15% Similarity=0.224 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 433 ELTIELIATKESLESAHAAHLEAEEQ 458 (910)
Q Consensus 433 eLt~EL~~lKEsLe~a~aa~~eAEe~ 458 (910)
-|..||+.|+-.++..+....+-|..
T Consensus 3 ~Lq~eia~LrlEidtik~q~qekE~k 28 (305)
T PF14915_consen 3 MLQDEIAMLRLEIDTIKNQNQEKEKK 28 (305)
T ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 36778888888888877766554443
No 127
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=91.81 E-value=54 Score=43.05 Aligned_cols=20 Identities=10% Similarity=0.082 Sum_probs=9.9
Q ss_pred hhhHHHHHHHHHHHHHHhhh
Q 002541 801 KLGIEQELRKWRAEHEQRRK 820 (910)
Q Consensus 801 K~avE~ELRkwR~e~eq~rk 820 (910)
...+..++..++.+...|..
T Consensus 862 ~~~~~~~~~~~~~~~~~~~~ 881 (1047)
T PRK10246 862 QQALMQQIAQATQQVEDWGY 881 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555544
No 128
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=91.72 E-value=27 Score=39.52 Aligned_cols=40 Identities=23% Similarity=0.228 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHH
Q 002541 654 KSLAQAAGEELHKAKEEAEQAKAGASTIESRLTAARKEIE 693 (910)
Q Consensus 654 Kkeae~ae~EL~~lkeEaE~aKaeI~taE~rL~aA~KElE 693 (910)
+..+..++.++..+...++.....+..+...|..+.+-.+
T Consensus 229 k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~ 268 (325)
T PF08317_consen 229 KKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIRE 268 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333344444444444444444444333
No 129
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=91.71 E-value=27 Score=39.48 Aligned_cols=63 Identities=25% Similarity=0.336 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 373 AQLEVAKARHVAAVSELKSVKDEVESLRKDYASLVTEKDIAVKKAEEAISASKEVEKTVEELT 435 (910)
Q Consensus 373 ~eLE~ar~q~a~~laEL~svKeELekLrqEl~~l~eeK~~A~k~AeEA~~aak~~eekveeLt 435 (910)
..++....+|+..+.+...+..++..++..+..+.-+++.......-+......++..-.+|+
T Consensus 22 eK~~~L~kk~~ell~e~k~~~k~~~~~~Kk~~~l~kek~~l~~E~~k~~~~k~KLE~LCRELQ 84 (309)
T PF09728_consen 22 EKLEALCKKYAELLEEMKRLQKQLKKLQKKQEQLQKEKDQLQSELSKAILAKSKLESLCRELQ 84 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666778888888888888877777777777777766655544333333333333333333
No 130
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=91.62 E-value=20 Score=39.02 Aligned_cols=38 Identities=16% Similarity=0.202 Sum_probs=16.1
Q ss_pred HHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002541 672 EQAKAGASTIESRLTAARKEIEAARASEKLALAAIKAL 709 (910)
Q Consensus 672 E~aKaeI~taE~rL~aA~KElEAAKAsEa~Ala~ikaL 709 (910)
......+...+.++..+...+...+..--.-+..|=-+
T Consensus 122 ~~~~~~~~~~~~~l~~l~~~l~~~r~~l~~~l~~ifpI 159 (302)
T PF10186_consen 122 EELQNELEERKQRLSQLQSQLARRRRQLIQELSEIFPI 159 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 33334444444454444444444444333333333333
No 131
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=91.57 E-value=21 Score=37.81 Aligned_cols=140 Identities=17% Similarity=0.204 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 369 VAARAQLEVAKARHVA---AVSELKSVKDEVESLRKDYASLVTEKDIAVKKAEEAISASKEVEKTVEELTIELIATKESL 445 (910)
Q Consensus 369 ~a~k~eLE~ar~q~a~---~laEL~svKeELekLrqEl~~l~eeK~~A~k~AeEA~~aak~~eekveeLt~EL~~lKEsL 445 (910)
..+..++...+.++.. ++-.-+.+++||..|+.-+..+-+.......++..+.+...-+..++..|+.+-..+....
T Consensus 39 a~L~~e~~~L~~q~~s~Qqal~~aK~l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~ 118 (193)
T PF14662_consen 39 AQLAEEITDLRKQLKSLQQALQKAKALEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAER 118 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhh
Confidence 3344455555555443 3444456799999999999999999999999898888888888888888888888887777
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 002541 446 ESAHAAHLEAEEQRIGAAMARDQDSHLWEKELKQAEEELQKLTQQILSAKDLRSKLDTASALLLDLKAEL 515 (910)
Q Consensus 446 e~a~aa~~eAEe~r~~v~la~eqd~~~~e~eL~qaEEEie~Lr~el~~a~dLeakLeea~~~Le~Lk~EL 515 (910)
+-....+.+.-.... .+++ ....++.-+-+.+..+..-...+ .+|...+++-......||.|+
T Consensus 119 ~~lk~~~~eL~~~~~--~Lq~--Ql~~~e~l~~~~da~l~e~t~~i---~eL~~~ieEy~~~teeLR~e~ 181 (193)
T PF14662_consen 119 DGLKKRSKELATEKA--TLQR--QLCEFESLICQRDAILSERTQQI---EELKKTIEEYRSITEELRLEK 181 (193)
T ss_pred hhHHHHHHHHHHhhH--HHHH--HHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHHH
Confidence 776665544322211 1322 12244555555566665555544 367777777777777777666
No 132
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=91.36 E-value=7.4 Score=41.43 Aligned_cols=74 Identities=20% Similarity=0.362 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHH
Q 002541 554 SAKKELEEVKLNIEKATAEVNCLKVAATSLQSELEREKSALAAIRQREGMASVAVASLEAELDRTRSEIALVQM 627 (910)
Q Consensus 554 sakkELee~K~~Leka~eEl~sL~~~vesLrsELek~K~ELeelKeke~~a~~eI~sL~eELer~ksELe~~ka 627 (910)
-++..|.+....+..--.+|-+|+..+..++..+......+..++........++.....+|.+.+.+.+.++.
T Consensus 14 LLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLre 87 (202)
T PF06818_consen 14 LLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLRE 87 (202)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhh
Confidence 35555555555555555566666655555555555555555555555555555555555555555555444433
No 133
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=91.33 E-value=55 Score=42.20 Aligned_cols=237 Identities=15% Similarity=0.180 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 002541 388 ELKSVKDEVESLRKDYASLVTEKDIAVKKAEEAISASKEVEKTVEELTIELIATKESLESAHAAHLEAEEQRIGAAMARD 467 (910)
Q Consensus 388 EL~svKeELekLrqEl~~l~eeK~~A~k~AeEA~~aak~~eekveeLt~EL~~lKEsLe~a~aa~~eAEe~r~~v~la~e 467 (910)
+|...-.+|..|+.+...+.+.++.......-+......+.+-|+.+..... .+..++....+.-- +
T Consensus 175 ~ll~~h~eL~~lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~~rer~~-~~~~Ie~l~~k~~~---------v--- 241 (1072)
T KOG0979|consen 175 ELLQYHIELMDLREDEKSLEDKLTTKTEKLNRLEDEIDKLEKDVERVRERER-KKSKIELLEKKKKW---------V--- 241 (1072)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhccc---------c---
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccCCCCCCchhhhhhhhH
Q 002541 468 QDSHLWEKELKQAEEELQKLTQQILSAKDLRSKLDTASALLLDLKAELSAYMESKLKEESNEEGHSNGELEEPERKTHTD 547 (910)
Q Consensus 468 qd~~~~e~eL~qaEEEie~Lr~el~~a~dLeakLeea~~~Le~Lk~ELa~~lE~kL~e~~~ei~~lq~~L~E~ek~~~~~ 547 (910)
....+.+++.+..+..++++.++ +.+.-...-.......|+++. ..
T Consensus 242 -~y~~~~~ey~~~k~~~~r~k~~~---r~l~k~~~pi~~~~eeLe~~~------------------------------~e 287 (1072)
T KOG0979|consen 242 -EYKKHDREYNAYKQAKDRAKKEL---RKLEKEIKPIEDKKEELESEK------------------------------KE 287 (1072)
T ss_pred -chHhhhHHHHHHHHHHHHHHHHH---HHHHHhhhhhhhhhhhHHhHH------------------------------Hh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHH
Q 002541 548 IQAAVASAKKELEEVKLNIEKATAEVNCLKVAATSLQSELEREKSALAAIRQREGMASVAVASLEAELDRTRSEIALVQM 627 (910)
Q Consensus 548 l~esL~sakkELee~K~~Leka~eEl~sL~~~vesLrsELek~K~ELeelKeke~~a~~eI~sL~eELer~ksELe~~ka 627 (910)
+......+..++.+....+....+.+..++ +++...+..++.++.+...-...|.+....+..++.+|..+
T Consensus 288 t~~~~s~~~~~~~e~~~k~~~~~ek~~~~~-------~~v~~~~~~le~lk~~~~~rq~~i~~~~k~i~~~q~el~~~-- 358 (1072)
T KOG0979|consen 288 TRSKISQKQRELNEALAKVQEKFEKLKEIE-------DEVEEKKNKLESLKKAAEKRQKRIEKAKKMILDAQAELQET-- 358 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc--
Q ss_pred HHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHH
Q 002541 628 KEKEAREKTVELPKQLQVAAQEADQAKSLAQAAGEELHKAKEEAEQAKAGASTIESRLT 686 (910)
Q Consensus 628 keeeare~~~eL~~eLqqls~EaEeAKkeae~ae~EL~~lkeEaE~aKaeI~taE~rL~ 686 (910)
....++..+++.+..+..+.+.....-..+..+.+....+....+.....++.
T Consensus 359 ------~~~e~~~~~~~ei~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~l~~~kr~~~ 411 (1072)
T KOG0979|consen 359 ------EDPENPVEEDQEIMKEVLQKKSSKLRDSRQEIDAEQLKSQKLRDLENKKRKLK 411 (1072)
T ss_pred ------CCccccchhHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
No 134
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=90.93 E-value=2.6 Score=44.10 Aligned_cols=9 Identities=44% Similarity=0.571 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 002541 661 GEELHKAKE 669 (910)
Q Consensus 661 e~EL~~lke 669 (910)
+..+.+++.
T Consensus 164 e~k~~~l~~ 172 (194)
T PF08614_consen 164 EEKLRKLEE 172 (194)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 135
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=90.84 E-value=26 Score=37.59 Aligned_cols=135 Identities=16% Similarity=0.201 Sum_probs=67.1
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhhhhh
Q 002541 289 VEQELERSHEEMPEYRKRSEAAEVAKNQVLKELDQTKRLVEELKLNLERAQTEEHQAKQDSELAKLRVEEMEQGIADDAS 368 (910)
Q Consensus 289 ~e~EL~~~qeeL~k~Keqle~aE~~k~qal~ELe~aKr~ieeL~~kLE~a~~e~~~A~e~sE~ak~r~~ELEqgia~~~~ 368 (910)
...++..+..+-..+...+...+..-+.+....+..|.+++.++.+=+.+................|+..|-. -+...-
T Consensus 67 ~~~~i~~~~~erdq~~~dL~s~E~sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry~aLK~-hAeekL 145 (207)
T PF05010_consen 67 SEAEIQKLLKERDQAYADLNSLEKSFSDLHKRYEKQKEVIEGYKKNEETLKKCIEEYEERLKKEEQRYQALKA-HAEEKL 145 (207)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 3445666666666667777777777777777777777777777766666655544444444444444444421 111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 369 VAARAQLEVAKARHVAAVSELKSVKDEVESLRKDYASLVTEKDIAVKKAEEAISASKEV 427 (910)
Q Consensus 369 ~a~k~eLE~ar~q~a~~laEL~svKeELekLrqEl~~l~eeK~~A~k~AeEA~~aak~~ 427 (910)
..+..+++.++..|. +++....-.|.+.+-.+.++-.....-.+..+|+.+...++
T Consensus 146 ~~ANeei~~v~~~~~---~e~~aLqa~lkk~e~~~~SLe~~LeQK~kEn~ELtkICDeL 201 (207)
T PF05010_consen 146 EKANEEIAQVRSKHQ---AELLALQASLKKEEMKVQSLEESLEQKTKENEELTKICDEL 201 (207)
T ss_pred HHHHHHHHHHHHHhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112223333332222 23333344444554455444444444444444444444433
No 136
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=90.62 E-value=16 Score=41.51 Aligned_cols=52 Identities=21% Similarity=0.248 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHH
Q 002541 642 QLQVAAQEADQAKSLAQAAGEELHKAKEEAEQAKAGASTIESRLTAARKEIE 693 (910)
Q Consensus 642 eLqqls~EaEeAKkeae~ae~EL~~lkeEaE~aKaeI~taE~rL~aA~KElE 693 (910)
+|.....+....+..+...+.++..+...++.....+......|.++.+-.+
T Consensus 212 ~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~ 263 (312)
T smart00787 212 KLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLE 263 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444444444444444444444444444333
No 137
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=90.51 E-value=12 Score=38.73 Aligned_cols=68 Identities=25% Similarity=0.350 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHH
Q 002541 558 ELEEVKLNIEKATAEVNCLKVAATSLQSELEREKSALAAIRQREGMASVAVASLEAELDRTRSEIALV 625 (910)
Q Consensus 558 ELee~K~~Leka~eEl~sL~~~vesLrsELek~K~ELeelKeke~~a~~eI~sL~eELer~ksELe~~ 625 (910)
++.+.+..+.....++..++.....+..++...+......++........+..+.........++..+
T Consensus 82 e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l 149 (191)
T PF04156_consen 82 ELSELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIREL 149 (191)
T ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444555555555555555555555555555555555444444444444444444444444333
No 138
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=90.49 E-value=64 Score=41.58 Aligned_cols=23 Identities=26% Similarity=0.359 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 002541 776 VNKEIATRKEALKVAMEKAEKAK 798 (910)
Q Consensus 776 ~~~Eie~~k~aleeAleraE~Ae 798 (910)
...++...+..++....+.+.+.
T Consensus 717 ~~~~l~~~~~~~~~~~~~~~~~~ 739 (908)
T COG0419 717 LIEELESRKAELEELKKELEKLE 739 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555444
No 139
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=90.33 E-value=14 Score=36.43 Aligned_cols=10 Identities=30% Similarity=0.444 Sum_probs=3.6
Q ss_pred HHHHHHhcHH
Q 002541 670 EAEQAKAGAS 679 (910)
Q Consensus 670 EaE~aKaeI~ 679 (910)
+.+.+++.|.
T Consensus 97 ~veEL~~Dv~ 106 (120)
T PF12325_consen 97 EVEELRADVQ 106 (120)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 140
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=90.30 E-value=28 Score=37.03 Aligned_cols=77 Identities=30% Similarity=0.308 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHH
Q 002541 373 AQLEVAKARHVAAVSELKSVKDEVESLRKDYASLVTEKDIAVKKAEEAISAS--------KEVEKTVEELTIELIATKES 444 (910)
Q Consensus 373 ~eLE~ar~q~a~~laEL~svKeELekLrqEl~~l~eeK~~A~k~AeEA~~aa--------k~~eekveeLt~EL~~lKEs 444 (910)
..|..++.++...-.+|...+-|-+-|.+.|..+..+++.-..+-..+.... -.+++++..|...+..-...
T Consensus 86 ~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~lLEkKl~~l~~~lE~keaq 165 (201)
T PF13851_consen 86 QSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKTGLKNLLLEKKLQALSEQLEKKEAQ 165 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555555555555555555554444333332 24666666666666544444
Q ss_pred HHHHH
Q 002541 445 LESAH 449 (910)
Q Consensus 445 Le~a~ 449 (910)
|....
T Consensus 166 L~evl 170 (201)
T PF13851_consen 166 LNEVL 170 (201)
T ss_pred HHHHH
Confidence 44433
No 141
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=90.04 E-value=33 Score=37.55 Aligned_cols=52 Identities=19% Similarity=0.206 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHH
Q 002541 574 NCLKVAATSLQSELEREKSALAAIRQREGMASVAVASLEAELDRTRSEIALV 625 (910)
Q Consensus 574 ~sL~~~vesLrsELek~K~ELeelKeke~~a~~eI~sL~eELer~ksELe~~ 625 (910)
...+..+..+..++..+..++..++.+..........+.....++...-..+
T Consensus 41 ~~~~~~~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L 92 (264)
T PF06008_consen 41 NPQKQQLDPLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDL 92 (264)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444444444444444444444444444444444443333
No 142
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=89.95 E-value=17 Score=44.96 Aligned_cols=61 Identities=23% Similarity=0.289 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhHH
Q 002541 552 VASAKKELEEVKLNIEKATAEVNCLKVAATSLQSELEREKSALAAIRQREGMASVAVASLE 612 (910)
Q Consensus 552 L~sakkELee~K~~Leka~eEl~sL~~~vesLrsELek~K~ELeelKeke~~a~~eI~sL~ 612 (910)
|-.+..+|..--..+-...+....+...+..|..+++....+|..+++++.+...--.+|.
T Consensus 137 lpeveael~qr~~al~~aee~~~~~eer~~kl~~~~qe~naeL~rarqreemneeh~~rls 197 (916)
T KOG0249|consen 137 LPEVEAELAQRNAALTKAEEHSGNIEERTRKLEEQLEELNAELQRARQREKMNEEHNKRLS 197 (916)
T ss_pred hhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccc
Confidence 3344444444444444444444445555566666666666677666666665554444433
No 143
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.75 E-value=55 Score=39.63 Aligned_cols=69 Identities=22% Similarity=0.301 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 385 AVSELKSVKDEVESLRKDYASLVTEKDIAVKKAEEAISASKEVEKTVEELTIELIATKESLESAHAAHL 453 (910)
Q Consensus 385 ~laEL~svKeELekLrqEl~~l~eeK~~A~k~AeEA~~aak~~eekveeLt~EL~~lKEsLe~a~aa~~ 453 (910)
+..+++-.+.|+..|..+|+.+..++-.|..---++......+.++.++|.+++..++-.++..+.+.-
T Consensus 6 aeq~ve~lr~eierLT~el~q~t~e~~qaAeyGL~lLeeK~~Lkqq~eEleaeyd~~R~Eldqtkeal~ 74 (772)
T KOG0999|consen 6 AEQEVEKLRQEIERLTEELEQTTEEKIQAAEYGLELLEEKEDLKQQLEELEAEYDLARTELDQTKEALG 74 (772)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777888888888888877777666655555666667777777777777777776666665543
No 144
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=89.71 E-value=16 Score=39.98 Aligned_cols=118 Identities=18% Similarity=0.226 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 586 ELEREKSALAAIRQREGMASVAVASLEAELDRTRSEIALVQMKEKEAREKTVELPKQLQVAAQEADQAKSLAQAAGEELH 665 (910)
Q Consensus 586 ELek~K~ELeelKeke~~a~~eI~sL~eELer~ksELe~~kakeeeare~~~eL~~eLqqls~EaEeAKkeae~ae~EL~ 665 (910)
.|.....+...++..+......+..|..++..+..+-..+..+..+ +....+.+..+......+-..+..++.
T Consensus 13 rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~e-------aee~~~rL~~~~~~~~eEk~~Le~e~~ 85 (246)
T PF00769_consen 13 RLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQE-------AEEEKQRLEEEAEMQEEEKEQLEQELR 85 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH------------HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444445555555555555544443333222 222333444444444444445566666
Q ss_pred HHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002541 666 KAKEEAEQAKAGASTIESRLTAARKEIEAARASEKLALAAIKALQ 710 (910)
Q Consensus 666 ~lkeEaE~aKaeI~taE~rL~aA~KElEAAKAsEa~Ala~ikaL~ 710 (910)
.+..++..+..+....+......+.++..|+..+..+-.++..++
T Consensus 86 e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~~ak~~L~~~~ 130 (246)
T PF00769_consen 86 EAEAEIARLEEESERKEEEAEELQEELEEAREDEEEAKEELLEVM 130 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666667777777777777777777777776554
No 145
>PF15294 Leu_zip: Leucine zipper
Probab=89.64 E-value=39 Score=37.78 Aligned_cols=125 Identities=16% Similarity=0.234 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHH---------HhhhcchHHHHHHHHHHHH
Q 002541 582 SLQSELEREKSALAAIRQREGMASVAVASLEAELDRTRSEIALVQMKEKEAR---------EKTVELPKQLQVAAQEADQ 652 (910)
Q Consensus 582 sLrsELek~K~ELeelKeke~~a~~eI~sL~eELer~ksELe~~kakeeear---------e~~~eL~~eLqqls~EaEe 652 (910)
-|..|+..++.+...++.++...........++-..+...|..++....... ..+.+|...+..++.+++.
T Consensus 129 ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~~~~~~~~k~~~~~~~q~l~dLE~k~a~lK~e~ek 208 (278)
T PF15294_consen 129 LLNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQDEQGDQKGKKDLSFKAQDLSDLENKMAALKSELEK 208 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccchhhHHHHHHHHHHHHHH
Confidence 3667777777777777777777777777777777777777766665222211 2344566677777666554
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002541 653 AKSLAQAAGEELHKAKEEAEQAKAGASTIESRLTAARKEIEAARASEKLALAAIKALQ 710 (910)
Q Consensus 653 AKkeae~ae~EL~~lkeEaE~aKaeI~taE~rL~aA~KElEAAKAsEa~Ala~ikaL~ 710 (910)
+ +.+.......++...-.++.++-.....|..+.++++. |-.+.-|.-.|+.+.
T Consensus 209 ~---~~d~~~~~k~L~e~L~~~KhelL~~QeqL~~aekeLek-KfqqT~ay~NMk~~l 262 (278)
T PF15294_consen 209 A---LQDKESQQKALEETLQSCKHELLRVQEQLSLAEKELEK-KFQQTAAYRNMKEIL 262 (278)
T ss_pred H---HHHHHHHHHHHHHHHHHHHHHHHhcchhhhcchhhHHH-HhCccHHHHHhHHHH
Confidence 4 55555666666777777777777676677777777766 556666666666654
No 146
>PF13514 AAA_27: AAA domain
Probab=89.62 E-value=83 Score=41.54 Aligned_cols=38 Identities=18% Similarity=0.329 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 369 VAARAQLEVAKARHVAAVSELKSVKDEVESLRKDYASL 406 (910)
Q Consensus 369 ~a~k~eLE~ar~q~a~~laEL~svKeELekLrqEl~~l 406 (910)
..+-..++.+..+...+-..+.....++..++.+++.+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~l 275 (1111)
T PF13514_consen 238 EDGAERLEQLEEELAEAQAQLERLQEELAQLEEELDAL 275 (1111)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34556677777777777777777777777777776554
No 147
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.46 E-value=57 Score=39.46 Aligned_cols=318 Identities=23% Similarity=0.256 Sum_probs=161.9
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH-hhhhhhhh
Q 002541 290 EQELERSHEEMPEYRKRSEAAEVAKNQVLKELDQTKRLVEELKLNLERAQTEEHQAKQDSELAKLRVEEME-QGIADDAS 368 (910)
Q Consensus 290 e~EL~~~qeeL~k~Keqle~aE~~k~qal~ELe~aKr~ieeL~~kLE~a~~e~~~A~e~sE~ak~r~~ELE-qgia~~~~ 368 (910)
..++..+-+++.........|-..=..++.+-...|...++|...++-+..+.++..++.--....-+..- -|+....
T Consensus 14 r~eierLT~el~q~t~e~~qaAeyGL~lLeeK~~Lkqq~eEleaeyd~~R~Eldqtkeal~q~~s~hkk~~~~g~e~Ee- 92 (772)
T KOG0999|consen 14 RQEIERLTEELEQTTEEKIQAAEYGLELLEEKEDLKQQLEELEAEYDLARTELDQTKEALGQYRSQHKKVARDGEEREE- 92 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHH-
Confidence 33444555555555444433333333567777777888888888888888887777766522222211110 0222211
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 369 VAARAQLEVAKARH-VAAVSELKSVKDEVESLRKDYASLVTEKDIAVKKAEEAISASKEVEKTVEELTIELIATKESLES 447 (910)
Q Consensus 369 ~a~k~eLE~ar~q~-a~~laEL~svKeELekLrqEl~~l~eeK~~A~k~AeEA~~aak~~eekveeLt~EL~~lKEsLe~ 447 (910)
.+=.+ -++++.| -.-+.+| ..||.++++++..+..+.+.-.+...+........+-.--.|..||-.+|.--..
T Consensus 93 -sLLqE-SaakE~~yl~kI~el---eneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~R 167 (772)
T KOG0999|consen 93 -SLLQE-SAAKEEYYLQKILEL---ENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREAR 167 (772)
T ss_pred -HHHHH-HHHhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 11111 2333333 3333333 3566666666666666666666655555555555555555566666666665555
Q ss_pred HHHHHHHHHHHHHHHhhhh------hh--hhhHHHHHHHHHHHHHHHHHHHHHhH--------HHHHHHHHHHHHH---H
Q 002541 448 AHAAHLEAEEQRIGAAMAR------DQ--DSHLWEKELKQAEEELQKLTQQILSA--------KDLRSKLDTASAL---L 508 (910)
Q Consensus 448 a~aa~~eAEe~r~~v~la~------eq--d~~~~e~eL~qaEEEie~Lr~el~~a--------~dLeakLeea~~~---L 508 (910)
.-..+-+.|+.-+. |++ .- +-..+..+++-.+++++-|+.++.-+ +-|+..|+.+... -
T Consensus 168 llseYSELEEENIs--LQKqVs~LR~sQVEyEglkheikRleEe~elln~q~ee~~~Lk~IAekQlEEALeTlq~EReqk 245 (772)
T KOG0999|consen 168 LLSEYSELEEENIS--LQKQVSNLRQSQVEYEGLKHEIKRLEEETELLNSQLEEAIRLKEIAEKQLEEALETLQQEREQK 245 (772)
T ss_pred HHHHHHHHHHhcch--HHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 55555555544222 221 10 11223345555566666666555433 2333333333211 2
Q ss_pred HHHHHHHHHHHHh----hhhhhhccccCCCCCCchhhhh--------------hhhHH----HHHHHHHHHHHHHHHHHH
Q 002541 509 LDLKAELSAYMES----KLKEESNEEGHSNGELEEPERK--------------THTDI----QAAVASAKKELEEVKLNI 566 (910)
Q Consensus 509 e~Lk~ELa~~lE~----kL~e~~~ei~~lq~~L~E~ek~--------------~~~~l----~esL~sakkELee~K~~L 566 (910)
..|++||..|+-. .+..... ++.+..-+.... ...++ +-.+..+..|+. -..+
T Consensus 246 ~alkkEL~q~~n~e~~~~~n~l~~---sldgk~~eDga~pn~d~e~eh~~l~kl~~Dl~tel~~p~sDl~sel~--isei 320 (772)
T KOG0999|consen 246 NALKKELSQYRNAEDISSLNHLLF---SLDGKFGEDGAEPNNDPEEEHGALKKLASDLFTELQGPVSDLFSELN--ISEI 320 (772)
T ss_pred HHHHHHHHHhcchhhhhhhhhhhe---ecccccccccCCCCCChhhhcchhhhccchhhhhccCchhHHHHHHH--HHHH
Confidence 4566677666542 1221111 111111110000 00111 111222333332 3446
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHH
Q 002541 567 EKATAEVNCLKVAATSLQSELEREKSALAAIRQREGMASVAVASLEAELDRTRS 620 (910)
Q Consensus 567 eka~eEl~sL~~~vesLrsELek~K~ELeelKeke~~a~~eI~sL~eELer~ks 620 (910)
++.+.++.++......|-.-|......|+..+..+......+..|.+-++.+..
T Consensus 321 qkLkqqL~smErek~~l~anL~dtqt~le~T~~~l~~~~er~~~l~e~v~al~r 374 (772)
T KOG0999|consen 321 QKLKQQLMSMEREKAELLANLQDTQTQLEHTEGDLMEQRERVDRLTEHVQALRR 374 (772)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 677778888887777777778888888888877777777778888777766554
No 148
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=89.46 E-value=53 Score=39.02 Aligned_cols=32 Identities=19% Similarity=0.105 Sum_probs=15.0
Q ss_pred HHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 669 EEAEQAKAGASTIESRLTAARKEIEAARASEK 700 (910)
Q Consensus 669 eEaE~aKaeI~taE~rL~aA~KElEAAKAsEa 700 (910)
.++..+..+.+..+.-+.....-++.++.++.
T Consensus 355 ~el~~L~Re~~~~~~~Y~~l~~r~eea~~~~~ 386 (498)
T TIGR03007 355 AELTQLNRDYEVNKSNYEQLLTRRESAEVSKQ 386 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Confidence 33334444444444445555555555555443
No 149
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=89.45 E-value=63 Score=39.90 Aligned_cols=18 Identities=33% Similarity=0.562 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 002541 472 LWEKELKQAEEELQKLTQ 489 (910)
Q Consensus 472 ~~e~eL~qaEEEie~Lr~ 489 (910)
.|+.--.-..+++..|+.
T Consensus 416 qWe~~R~pL~~e~r~lk~ 433 (594)
T PF05667_consen 416 QWEKHRAPLIEEYRRLKE 433 (594)
T ss_pred HHHHHHhHHHHHHHHHHH
Confidence 444444444444444443
No 150
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=89.41 E-value=5 Score=45.31 Aligned_cols=77 Identities=18% Similarity=0.175 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHH
Q 002541 552 VASAKKELEEVKLNIEKATAEVNCLKVAATSLQSELEREKSALAAIRQREGMASVAVASLEAELDRTRSEIALVQMKE 629 (910)
Q Consensus 552 L~sakkELee~K~~Leka~eEl~sL~~~vesLrsELek~K~ELeelKeke~~a~~eI~sL~eELer~ksELe~~kake 629 (910)
+..+.+|.+.+..-|..... ..........+..+|..++.+-..+.+++..+..+...|..++..+..+...+...+
T Consensus 18 ~~~~~~E~~~Y~~fL~~l~~-~~~~~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE 94 (314)
T PF04111_consen 18 LEQAEKERDTYQEFLKKLEE-ESDSEEDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEE 94 (314)
T ss_dssp -------------------------HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh-cCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444431 111122333444444444444444444444444444455555555555544444433
No 151
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=89.18 E-value=29 Score=35.73 Aligned_cols=116 Identities=21% Similarity=0.294 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 002541 551 AVASAKKELEEVKLNIEKATAEVNCLKVAATSLQSELEREKSALAAIRQREGMASVAVASLEAELDRTRSEIALVQMKEK 630 (910)
Q Consensus 551 sL~sakkELee~K~~Leka~eEl~sL~~~vesLrsELek~K~ELeelKeke~~a~~eI~sL~eELer~ksELe~~kakee 630 (910)
....+++||++++..+..+..++..|.......|..|..+-..... -....|....++...++.+|...+.++.
T Consensus 28 E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f~~------ysE~dik~AYe~A~~lQ~~L~~~re~E~ 101 (159)
T PF05384_consen 28 EYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNFDR------YSEEDIKEAYEEAHELQVRLAMLREREK 101 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc------cCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666666666666666666655555555555444443322 2344567777777788888888877777
Q ss_pred HHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 631 EAREKTVELPKQLQVAAQEADQAKSLAQAAGEELHKAKEEAE 672 (910)
Q Consensus 631 eare~~~eL~~eLqqls~EaEeAKkeae~ae~EL~~lkeEaE 672 (910)
..+..-.+|...|..+..=++.|..-+..+.--+.=+.....
T Consensus 102 qLr~rRD~LErrl~~l~~tierAE~l~sqi~vvl~yL~~dl~ 143 (159)
T PF05384_consen 102 QLRERRDELERRLRNLEETIERAENLVSQIGVVLNYLSGDLQ 143 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 666666666666666666666555544444333333333333
No 152
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=88.96 E-value=46 Score=37.71 Aligned_cols=96 Identities=17% Similarity=0.177 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHH
Q 002541 571 AEVNCLKVAATSLQSELEREKSALAAIRQREGMASVAVASLEAELDRTRSEIALVQMKEKEAREKTVELPKQLQVAAQEA 650 (910)
Q Consensus 571 eEl~sL~~~vesLrsELek~K~ELeelKeke~~a~~eI~sL~eELer~ksELe~~kakeeeare~~~eL~~eLqqls~Ea 650 (910)
.++......+..|..+|.....+...-++......++|..|...+.....|-+.+..-...++..-..|..+|..+..-.
T Consensus 206 ~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY 285 (306)
T PF04849_consen 206 KQLSEANQQIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKY 285 (306)
T ss_pred HHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445555555666666666666555555555555555555555555544444443333333333444444444444
Q ss_pred HHHHHHHHHHHHHHHH
Q 002541 651 DQAKSLAQAAGEELHK 666 (910)
Q Consensus 651 EeAKkeae~ae~EL~~ 666 (910)
.+.-..+..++.++..
T Consensus 286 ~E~~~mL~EaQEElk~ 301 (306)
T PF04849_consen 286 AECMAMLHEAQEELKT 301 (306)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444444433
No 153
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=88.85 E-value=32 Score=36.81 Aligned_cols=41 Identities=27% Similarity=0.516 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHH
Q 002541 773 LEEVNKEIATRKEALKVAMEKAEKAKEGKLGIEQELRKWRAEHE 816 (910)
Q Consensus 773 le~~~~Eie~~k~aleeAleraE~Ae~aK~avE~ELRkwR~e~e 816 (910)
+..+.++++..+++|..--.+.+.- -...|.|=+.|..+-+
T Consensus 133 ~~~l~~e~erL~aeL~~er~~~e~q---~~~Fe~ER~~W~eEKe 173 (202)
T PF06818_consen 133 LGSLRREVERLRAELQRERQRREEQ---RSSFEQERRTWQEEKE 173 (202)
T ss_pred chhHHHHHHHHHHHHHHHHHhHHHH---HHHHHHHHHHHHHHHH
Confidence 4445566666666665554444422 2567788899988755
No 154
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=88.42 E-value=45 Score=36.94 Aligned_cols=21 Identities=29% Similarity=0.403 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 002541 385 AVSELKSVKDEVESLRKDYAS 405 (910)
Q Consensus 385 ~laEL~svKeELekLrqEl~~ 405 (910)
.+.+|.+-...|.++..++..
T Consensus 7 sl~el~~h~~~L~~~N~~L~~ 27 (258)
T PF15397_consen 7 SLQELKKHEDFLTKLNKELIK 27 (258)
T ss_pred HHHHHHHHHHHHHHhhHHHHH
Confidence 344555555555555554443
No 155
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=88.42 E-value=37 Score=35.97 Aligned_cols=63 Identities=17% Similarity=0.222 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHH
Q 002541 556 KKELEEVKLNIEKATAEVNCLKVAATSLQSELEREKSALAAIRQREGMASVAVASLEAELDRT 618 (910)
Q Consensus 556 kkELee~K~~Leka~eEl~sL~~~vesLrsELek~K~ELeelKeke~~a~~eI~sL~eELer~ 618 (910)
..||++++..+....++-.+|.+....+..|-..+-.++..+++.-.......+.+......+
T Consensus 66 ~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL 128 (193)
T PF14662_consen 66 EEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKEL 128 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHH
Confidence 444444444444444444444444444444444444444444333333333333333333333
No 156
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=88.11 E-value=64 Score=38.34 Aligned_cols=20 Identities=35% Similarity=0.486 Sum_probs=17.2
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 002541 470 SHLWEKELKQAEEELQKLTQ 489 (910)
Q Consensus 470 ~~~~e~eL~qaEEEie~Lr~ 489 (910)
++++++-|.+.++++++|.+
T Consensus 448 clEmdk~LskKeeeverLQ~ 467 (527)
T PF15066_consen 448 CLEMDKTLSKKEEEVERLQQ 467 (527)
T ss_pred HHHHHHHhhhhHHHHHHHHH
Confidence 67888999999999988766
No 157
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=86.80 E-value=46 Score=35.23 Aligned_cols=36 Identities=22% Similarity=0.273 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 002541 642 QLQVAAQEADQAKSLAQAAGEELHKAKEEAEQAKAG 677 (910)
Q Consensus 642 eLqqls~EaEeAKkeae~ae~EL~~lkeEaE~aKae 677 (910)
+|..-..-++.++..++.+...|...+.+++.+|..
T Consensus 138 el~eK~qLLeaAk~Rve~L~~QL~~Ar~D~~~tk~a 173 (188)
T PF05335_consen 138 ELAEKTQLLEAAKRRVEELQRQLQAARADYEKTKKA 173 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334445555555555555555555555555543
No 158
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=86.75 E-value=83 Score=38.13 Aligned_cols=124 Identities=17% Similarity=0.252 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHH
Q 002541 582 SLQSELEREKSALAAIRQREGMASVAVASLEAELDRTRSEIALVQMKEKEAREKTVELPKQLQVAAQEADQAKSLAQAAG 661 (910)
Q Consensus 582 sLrsELek~K~ELeelKeke~~a~~eI~sL~eELer~ksELe~~kakeeeare~~~eL~~eLqqls~EaEeAKkeae~ae 661 (910)
....+|+.....+..+..........-+.|.+.++.....|..++.+.. +....|.++..+=-+|+.++.-++
T Consensus 351 ~~e~eL~el~~~~~~i~~~~~~~~~~yS~lq~~l~~~~~~l~~i~~~q~-------~~~e~L~~LrkdEl~Are~l~~~~ 423 (570)
T COG4477 351 KFEKELKELESVLDEILENIEAQEVAYSELQDNLEEIEKALTDIEDEQE-------KVQEHLTSLRKDELEARENLERLK 423 (570)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHhhhHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555444444444444444444444444444433322 233355555555556666666666
Q ss_pred HHHHHHHHHHHHH----------------HhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002541 662 EELHKAKEEAEQA----------------KAGASTIESRLTAARKEIEAARASEKLALAAIKALQES 712 (910)
Q Consensus 662 ~EL~~lkeEaE~a----------------KaeI~taE~rL~aA~KElEAAKAsEa~Ala~ikaL~e~ 712 (910)
..+..++.=++.- ...+..+..+|...--.++++.+-=..|...|..|.+.
T Consensus 424 ~~l~eikR~mek~nLPGlPe~~l~l~~~~~~~i~~l~~eLse~pinm~~v~~~v~~a~~~m~~l~~~ 490 (570)
T COG4477 424 SKLHEIKRYMEKSNLPGLPETFLSLFFTAGHEIQDLMKELSEVPINMEAVSALVDIATEDMNTLEDE 490 (570)
T ss_pred HHHHHHHHHHHHcCCCCCcHHHHHHHHhhhhHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 6666665444432 22344444444444444577777777777777777653
No 159
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=86.53 E-value=63 Score=36.60 Aligned_cols=64 Identities=22% Similarity=0.317 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 381 RHVAAVSELKSVKDEVESLRKDYASLVTEKDIAVKKAEEAISASKEVEKTVEELTIELIATKES 444 (910)
Q Consensus 381 q~a~~laEL~svKeELekLrqEl~~l~eeK~~A~k~AeEA~~aak~~eekveeLt~EL~~lKEs 444 (910)
.+...+.-+..--+-|..|...|..+....-...+......+....+....+.+..|+..+...
T Consensus 9 ~l~q~l~~l~~~eeK~~~L~kk~~ell~e~k~~~k~~~~~~Kk~~~l~kek~~l~~E~~k~~~~ 72 (309)
T PF09728_consen 9 QLMQSLNKLSSPEEKLEALCKKYAELLEEMKRLQKQLKKLQKKQEQLQKEKDQLQSELSKAILA 72 (309)
T ss_pred HHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555556677778888888877766666655555555555555555555555443333
No 160
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=85.93 E-value=51 Score=34.96 Aligned_cols=101 Identities=17% Similarity=0.181 Sum_probs=50.7
Q ss_pred HHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q 002541 592 SALAAIRQREGMASVAVASLEAELDRTRSEIALVQMKEKEAREKTVELPKQLQVAAQEADQAKSLAQAA-GEELHKAKEE 670 (910)
Q Consensus 592 ~ELeelKeke~~a~~eI~sL~eELer~ksELe~~kakeeeare~~~eL~~eLqqls~EaEeAKkeae~a-e~EL~~lkeE 670 (910)
..|..+....+....-+....+|++.++..+-..+..+......+-+...+|..+..++..++.-..+. =.+..++...
T Consensus 47 kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~eReeL~~k 126 (194)
T PF15619_consen 47 KALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKHLKKLSEDKNLAEREELQRK 126 (194)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHH
Confidence 344444444555555566666666666666666665555555555555555655555555544433210 0112334444
Q ss_pred HHHHHhcHHHHHHHHHHHHHHH
Q 002541 671 AEQAKAGASTIESRLTAARKEI 692 (910)
Q Consensus 671 aE~aKaeI~taE~rL~aA~KEl 692 (910)
...+...+.+.+.++..+.+.+
T Consensus 127 L~~~~~~l~~~~~ki~~Lek~l 148 (194)
T PF15619_consen 127 LSQLEQKLQEKEKKIQELEKQL 148 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444
No 161
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=85.86 E-value=27 Score=39.09 Aligned_cols=77 Identities=25% Similarity=0.329 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 002541 562 VKLNIEKATAEVNCLKVAATSLQSELEREKSALAAIRQREGMASVAVASLEAELDRTRSEIALVQMKEKEAREKTVE 638 (910)
Q Consensus 562 ~K~~Leka~eEl~sL~~~vesLrsELek~K~ELeelKeke~~a~~eI~sL~eELer~ksELe~~kakeeeare~~~e 638 (910)
....|++.......|...+++|-.+...+..+|..++++.+.++.-+.+-...|..+-.+++.++.+.++-...|++
T Consensus 257 it~~LEkI~SREK~lNnqL~~l~q~fr~a~~~lse~~e~y~q~~~gv~~rT~~L~eVm~e~E~~KqemEe~G~~msD 333 (384)
T KOG0972|consen 257 ITKALEKIASREKSLNNQLASLMQKFRRATDTLSELREKYKQASVGVSSRTETLDEVMDEIEQLKQEMEEQGAKMSD 333 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHhcccccC
Confidence 34556677777788888889999999999999999999999999999999999999999999998887776666666
No 162
>PRK12472 hypothetical protein; Provisional
Probab=85.84 E-value=18 Score=43.11 Aligned_cols=93 Identities=26% Similarity=0.288 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCCCCCccc
Q 002541 649 EADQAKSLAQAAGEELHKAKEEAEQAKAGASTIESRLTAARKEIEAARASEKLALAAIKALQESESAQRTDDVDSPTGVT 728 (910)
Q Consensus 649 EaEeAKkeae~ae~EL~~lkeEaE~aKaeI~taE~rL~aA~KElEAAKAsEa~Ala~ikaL~e~~~~~~~~~~~~~~~It 728 (910)
-.++++..+.....++.-+......+......++.+|..+-+-+.+|+..++.+-+
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~~a~~~l~~adk~l~~a~~d~~~~~a------------------------ 260 (508)
T PRK12472 205 AADEAKTAAAAAAREAAPLKASLRKLERAKARADAELKRADKALAAAKTDEAKARA------------------------ 260 (508)
T ss_pred hHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhH------------------------
Confidence 34445555555555555555555555555556666666666666665555544433
Q ss_pred cchHhhHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 002541 729 LSLEEYYELSKRAHEAEEQANMRVVAAISQIEVAKASELRSLERLEEVNK 778 (910)
Q Consensus 729 ls~eEy~~L~~ka~Eaee~a~kKVa~A~aQvEeAkese~~~l~Kle~~~~ 778 (910)
.+....+..++..+..|++.|++....-+.-+..++.
T Consensus 261 -------------~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~ 297 (508)
T PRK12472 261 -------------EERQQKAAQQAAEAATQLDTAKADAEAKRAAAAATKE 297 (508)
T ss_pred -------------HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 2444556777788888888887765544443333333
No 163
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=84.88 E-value=1.1e+02 Score=38.08 Aligned_cols=50 Identities=26% Similarity=0.307 Sum_probs=29.2
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 292 ELERSHEEMPEYRKRSEAAEVAKNQVLKELDQTKRLVEELKLNLERAQTE 341 (910)
Q Consensus 292 EL~~~qeeL~k~Keqle~aE~~k~qal~ELe~aKr~ieeL~~kLE~a~~e 341 (910)
+|..+......+.+.+...+..++.--.+|-.+++..+.|...|-+.+.+
T Consensus 163 ~l~sL~~k~~~Le~~L~~le~~r~~e~~~La~~q~e~d~L~~qLsk~~~~ 212 (739)
T PF07111_consen 163 ALASLTSKAEELEKSLESLETRRAGEAKELAEAQREADLLREQLSKTQEE 212 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 35555555555666666666666666666666666666666665444443
No 164
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=84.88 E-value=57 Score=34.58 Aligned_cols=54 Identities=22% Similarity=0.299 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 651 DQAKSLAQAAGEELHKAKEEAEQAKAGASTIESRLTAARKEIEAARASEKLALA 704 (910)
Q Consensus 651 EeAKkeae~ae~EL~~lkeEaE~aKaeI~taE~rL~aA~KElEAAKAsEa~Ala 704 (910)
..+...+...+..+..+....+.++..|..++.+|..++......++-...|-+
T Consensus 94 ~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a~a 147 (221)
T PF04012_consen 94 ADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARENAAKA 147 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555566666666666666777777777777666666555554444443
No 165
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=84.69 E-value=45 Score=37.70 Aligned_cols=31 Identities=13% Similarity=0.107 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 372 RAQLEVAKARHVAAVSELKSVKDEVESLRKD 402 (910)
Q Consensus 372 k~eLE~ar~q~a~~laEL~svKeELekLrqE 402 (910)
+.+++.++..|..+-.+|..++.++..++..
T Consensus 151 ~~~~~~a~~~~~~a~~~l~~a~~~~~~~~~~ 181 (346)
T PRK10476 151 AQQVDQARTAQRDAEVSLNQALLQAQAAAAA 181 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777777777777777776666655443
No 166
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=84.61 E-value=43 Score=36.70 Aligned_cols=45 Identities=13% Similarity=0.248 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 002541 561 EVKLNIEKATAEVNCLKVAATSLQSELEREKSALAAIRQREGMAS 605 (910)
Q Consensus 561 e~K~~Leka~eEl~sL~~~vesLrsELek~K~ELeelKeke~~a~ 605 (910)
.++.....+..++......+..|..++.....+-..+..+...+.
T Consensus 16 q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eae 60 (246)
T PF00769_consen 16 QMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAE 60 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444443333333
No 167
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=84.55 E-value=55 Score=38.75 Aligned_cols=26 Identities=31% Similarity=0.291 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 373 AQLEVAKARHVAAVSELKSVKDEVES 398 (910)
Q Consensus 373 ~eLE~ar~q~a~~laEL~svKeELek 398 (910)
++|++.++.|...+.+.++.++++..
T Consensus 347 sqlen~k~~~e~~~~e~~~l~~~~~~ 372 (493)
T KOG0804|consen 347 SQLENQKQYYELLITEADSLKQESSD 372 (493)
T ss_pred HHHHhHHHHHHHHHHHHHhhhhhhhH
Confidence 46666666666665555555444433
No 168
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=84.25 E-value=19 Score=41.59 Aligned_cols=96 Identities=25% Similarity=0.303 Sum_probs=78.1
Q ss_pred HHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHH------HH
Q 002541 592 SALAAIRQREGMASVAVASLEAELDRTRSEIALVQMKEKEAREKTVELPKQLQVAAQEADQAKSLAQAAGEE------LH 665 (910)
Q Consensus 592 ~ELeelKeke~~a~~eI~sL~eELer~ksELe~~kakeeeare~~~eL~~eLqqls~EaEeAKkeae~ae~E------L~ 665 (910)
..|+.+..++..+...+..+..+.+..+.+|..++.+-..+...+.++..+|.+++.++++.|.+.+..-.. |.
T Consensus 252 ~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emeerg~~mtD~sPlv 331 (359)
T PF10498_consen 252 KTLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEERGSSMTDGSPLV 331 (359)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHH
Confidence 345666777788888888899999999999999998888888889999999999999999998887765333 56
Q ss_pred HHHHHHHHHHhcHHHHHHHHHH
Q 002541 666 KAKEEAEQAKAGASTIESRLTA 687 (910)
Q Consensus 666 ~lkeEaE~aKaeI~taE~rL~a 687 (910)
+++.-+..+|.+|.+|..|+=.
T Consensus 332 ~IKqAl~kLk~EI~qMdvrIGV 353 (359)
T PF10498_consen 332 KIKQALTKLKQEIKQMDVRIGV 353 (359)
T ss_pred HHHHHHHHHHHHHHHhhhhhhe
Confidence 7788888888888888877643
No 169
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=84.10 E-value=62 Score=34.35 Aligned_cols=129 Identities=15% Similarity=0.168 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hHHHHHhHHHHHHHHHHHHHHHHHHH
Q 002541 551 AVASAKKELEEVKLNIEKATAEVNCLKVAATSLQSELEREKSALAAIRQREGM-ASVAVASLEAELDRTRSEIALVQMKE 629 (910)
Q Consensus 551 sL~sakkELee~K~~Leka~eEl~sL~~~vesLrsELek~K~ELeelKeke~~-a~~eI~sL~eELer~ksELe~~kake 629 (910)
-+..-..|+..++..|...++....+...+.....+|-+.+..+..++.-... ...+.+.|..+|..+..+++....++
T Consensus 62 ll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l~~~~~ki 141 (194)
T PF15619_consen 62 LLQRHNEEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKHLKKLSEDKNLAEREELQRKLSQLEQKLQEKEKKI 141 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666667777777777777777777777777777777777776553321 23335555555555555554444333
Q ss_pred HHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHH
Q 002541 630 KEAREKTVELPKQLQVAAQEADQAKSLAQAAGEELHKAKEEAEQAKAGASTIE 682 (910)
Q Consensus 630 eeare~~~eL~~eLqqls~EaEeAKkeae~ae~EL~~lkeEaE~aKaeI~taE 682 (910)
..... .+...-..+..++..-++....++.++..+..|+..+...|.+.+
T Consensus 142 ~~Lek---~leL~~k~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~~klkEKe 191 (194)
T PF15619_consen 142 QELEK---QLELENKSFRRQLASEKKKHKEAQEEVKSLQEEIQRLNQKLKEKE 191 (194)
T ss_pred HHHHH---HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 22111 112222333444444444444455555555555555544444433
No 170
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=83.68 E-value=1.3e+02 Score=37.73 Aligned_cols=22 Identities=14% Similarity=0.200 Sum_probs=15.3
Q ss_pred cccccccchhhHHHhhhhccCc
Q 002541 883 KKKKKSLFPRLFMFLARRRSHA 904 (910)
Q Consensus 883 ~kkkk~~~P~~~~f~~rkk~~~ 904 (910)
..||+..--.+..||.+|++..
T Consensus 516 ~~~~~g~~ssi~r~f~kk~~~~ 537 (916)
T KOG0249|consen 516 GPKKKGIKSSIGRLFGKKENGR 537 (916)
T ss_pred CCCCCCchhHHHHHHhhhcccc
Confidence 3456666666899999987543
No 171
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=83.53 E-value=48 Score=32.65 Aligned_cols=43 Identities=12% Similarity=0.169 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 554 SAKKELEEVKLNIEKATAEVNCLKVAATSLQSELEREKSALAA 596 (910)
Q Consensus 554 sakkELee~K~~Leka~eEl~sL~~~vesLrsELek~K~ELee 596 (910)
.+...|......+...+.++..+...-+.|+.||-+.-.+.+.
T Consensus 20 ~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~ 62 (120)
T PF12325_consen 20 RLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEE 62 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444445555555555545555555544444433
No 172
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=83.49 E-value=65 Score=34.14 Aligned_cols=113 Identities=18% Similarity=0.256 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhhHHHHHHHHHHHHhhhh
Q 002541 287 KYVEQELERSHEEMPEYRKRSEAAEVAKNQVLKELDQTKRLVEELKLNLERAQTE--EHQAKQDSELAKLRVEEMEQGIA 364 (910)
Q Consensus 287 ~~~e~EL~~~qeeL~k~Keqle~aE~~k~qal~ELe~aKr~ieeL~~kLE~a~~e--~~~A~e~sE~ak~r~~ELEqgia 364 (910)
..+..-|..+++.|.+++..+....+...++..+++.+.+.+..+..+.+.+... ..-|+... .+...+
T Consensus 26 ~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al----~~k~~~----- 96 (221)
T PF04012_consen 26 KMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAGREDLAREAL----QRKADL----- 96 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH----HHHHHH-----
Confidence 4566778888889999999999999999889988888888888888777666544 22222221 222222
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 365 DDASVAARAQLEVAKARHVAAVSELKSVKDEVESLRKDYASLVTEKDIAVK 415 (910)
Q Consensus 365 ~~~~~a~k~eLE~ar~q~a~~laEL~svKeELekLrqEl~~l~eeK~~A~k 415 (910)
..+++....+|..........+..|..++..|..+...+.....
T Consensus 97 -------e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~a 140 (221)
T PF04012_consen 97 -------EEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKA 140 (221)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22233333344444444555555555555555555555544333
No 173
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=83.48 E-value=16 Score=41.43 Aligned_cols=70 Identities=17% Similarity=0.217 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002541 642 QLQVAAQEADQAKSLAQAAGEELHKAKEEAEQAKAGASTIESRLTAARKEIEAARASEKLALAAIKALQE 711 (910)
Q Consensus 642 eLqqls~EaEeAKkeae~ae~EL~~lkeEaE~aKaeI~taE~rL~aA~KElEAAKAsEa~Ala~ikaL~e 711 (910)
+|..+..+-+++..++..++.+...+..+-...-.........+.....+....++.-..+...|..|..
T Consensus 65 eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~k 134 (314)
T PF04111_consen 65 ELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRLRK 134 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444444444444444455555555555555555555555555555555555555555556666665553
No 174
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=83.29 E-value=59 Score=36.18 Aligned_cols=90 Identities=18% Similarity=0.282 Sum_probs=46.9
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH-hhhhhhhh
Q 002541 290 EQELERSHEEMPEYRKRSEAAEVAKNQVLKELDQTKRLVEELKLNLERAQTEEHQAKQDSELAKLRVEEME-QGIADDAS 368 (910)
Q Consensus 290 e~EL~~~qeeL~k~Keqle~aE~~k~qal~ELe~aKr~ieeL~~kLE~a~~e~~~A~e~sE~ak~r~~ELE-qgia~~~~ 368 (910)
+.+|..++..+..++.++...+....+...++..++..++....+|..++.+ . .|++.|- +|..
T Consensus 79 ~~~l~~a~a~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~a~~~l~~a~~~-------~----~r~~~L~~~g~i---- 143 (334)
T TIGR00998 79 ELALAKAEANLAALVRQTKQLEITVQQLQAKVESLKIKLEQAREKLLQAELD-------L----RRRVPLFKKGLI---- 143 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-------H----HHHHHHHHCCCc----
Confidence 3456665666666666665555555554444444444444333333332222 1 1222222 1322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 369 VAARAQLEVAKARHVAAVSELKSVKDEV 396 (910)
Q Consensus 369 ~a~k~eLE~ar~q~a~~laEL~svKeEL 396 (910)
-+.+++.++..|..+..+|..++.+.
T Consensus 144 --s~~~~~~a~~~~~~a~~~l~~~~~~~ 169 (334)
T TIGR00998 144 --SREELDHARKALLSAKAALNAAIQEQ 169 (334)
T ss_pred --CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678888888877777777776653
No 175
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=83.24 E-value=68 Score=34.14 Aligned_cols=53 Identities=17% Similarity=0.241 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002541 552 VASAKKELEEVKLNIEKATAEVNCLKVAATSLQSELEREKSALAAIRQREGMA 604 (910)
Q Consensus 552 L~sakkELee~K~~Leka~eEl~sL~~~vesLrsELek~K~ELeelKeke~~a 604 (910)
+.+++.++.+++.........+..+...-..|..-|.....+...++..+...
T Consensus 29 IksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y 81 (201)
T PF13851_consen 29 IKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNY 81 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666666666666666666666666666666666555543
No 176
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=83.18 E-value=54 Score=33.82 Aligned_cols=51 Identities=20% Similarity=0.318 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 549 QAAVASAKKELEEVKLNIEKATAEVNCLKVAATSLQSELEREKSALAAIRQ 599 (910)
Q Consensus 549 ~esL~sakkELee~K~~Leka~eEl~sL~~~vesLrsELek~K~ELeelKe 599 (910)
...+..+..|+++....+.....++..++.....++..+...+..+..+..
T Consensus 87 ~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~ 137 (191)
T PF04156_consen 87 QQQLQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDE 137 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444443333333333333333333
No 177
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=83.12 E-value=83 Score=35.10 Aligned_cols=80 Identities=25% Similarity=0.292 Sum_probs=47.3
Q ss_pred Cccc-HHHHHHhcCCccc-ccccccchH-HHhHHHHHHHHHHHhhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 258 PFES-VKEVVSKFGGIVD-WKAHRMQTV-ERRKYVEQELERSHEEMPE--YRKRSEAAEVAKNQVLKELDQTKRLVEELK 332 (910)
Q Consensus 258 Pf~S-VK~AvslFGe~~~-~K~~r~~~~-ER~~~~e~EL~~~qeeL~k--~Keqle~aE~~k~qal~ELe~aKr~ieeL~ 332 (910)
-|.| |+.=+.++|.++- .+ ..++ =|.-.++. |-.+=++|.. .+.=...--.....++.+|+.++--+..|+
T Consensus 97 S~~silq~If~KHGDIAsNc~---lkS~~~RS~yLe~-Lc~IIqeLq~t~~~~LS~~dl~e~~~~l~DLesa~vkV~WLR 172 (269)
T PF05278_consen 97 SQVSILQKIFEKHGDIASNCK---LKSQQFRSYYLEC-LCDIIQELQSTPLKELSESDLKEMIATLKDLESAKVKVDWLR 172 (269)
T ss_pred hHHHHHHHHHHhCccHhhccc---cCcHHHHHHHHHH-HHHHHHHHhcCcHhhhhHHHHHHHHHHHHHHHHcCcchHHHH
Confidence 3555 8888899999862 11 1111 23333332 3233233322 122222223455678999999999999999
Q ss_pred HHHHHHHHH
Q 002541 333 LNLERAQTE 341 (910)
Q Consensus 333 ~kLE~a~~e 341 (910)
.+|+.+...
T Consensus 173 ~~L~Ei~Ea 181 (269)
T PF05278_consen 173 SKLEEILEA 181 (269)
T ss_pred HHHHHHHHH
Confidence 999987655
No 178
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=83.07 E-value=1.6e+02 Score=38.43 Aligned_cols=223 Identities=16% Similarity=0.184 Sum_probs=131.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHH
Q 002541 580 ATSLQSELEREKSALAAIRQREGMASVAVASLEAELDRTRSEIALVQMKEKEAREKTVELPKQLQVAAQEADQAKSLAQA 659 (910)
Q Consensus 580 vesLrsELek~K~ELeelKeke~~a~~eI~sL~eELer~ksELe~~kakeeeare~~~eL~~eLqqls~EaEeAKkeae~ 659 (910)
++.|+..=+++..+|..+..+.. .+......+..+.+.|.-.+...+..+..+..+..+++...+++....-.+..
T Consensus 654 ~~~L~~~k~rl~eel~ei~~~~~----e~~~v~~~i~~le~~~~~~~~~~~~~k~~l~~~~~El~~~~~~i~~~~p~i~~ 729 (1141)
T KOG0018|consen 654 VDQLKEKKERLLEELKEIQKRRK----EVSSVESKIHGLEMRLKYSKLDLEQLKRSLEQNELELQRTESEIDEFGPEISE 729 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHH
Confidence 35555555555555555544222 33333444444444444443333333444455667777777777776666667
Q ss_pred HHHHHHHHHHHHHHHHhcHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHH-----hhhhhhhcccCCCCCCCc
Q 002541 660 AGEELHKAKEEAEQAKAGASTIESRLTAA--------RKEIEAARASEKLALAAIKA-----LQESESAQRTDDVDSPTG 726 (910)
Q Consensus 660 ae~EL~~lkeEaE~aKaeI~taE~rL~aA--------~KElEAAKAsEa~Ala~ika-----L~e~~~~~~~~~~~~~~~ 726 (910)
...+++....++..+...+..++.++-.- -.+|+..+-.+..|...+.- ..+..-. +.. ...
T Consensus 730 i~r~l~~~e~~~~~L~~~~n~ved~if~~f~~~igv~ir~Yee~~~~~~~a~k~~ef~~q~~~l~~~l~--fe~---~~d 804 (1141)
T KOG0018|consen 730 IKRKLQNREGEMKELEERMNKVEDRIFKGFCRRIGVRIREYEERELQQEFAKKRLEFENQKAKLENQLD--FEK---QKD 804 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCeeeehHHHHHHHHHHHHHHHHHHHHHHHHhhhhh--hee---ccc
Confidence 77777777777777777777777666321 45666655544444433321 1111110 111 111
Q ss_pred cccchHhhHHHHHH---HHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhh
Q 002541 727 VTLSLEEYYELSKR---AHEAEEQANMRVVAAISQIEVAKASELRSLERLEEVNKEIATRKEALKVAMEKAEKAKEGKLG 803 (910)
Q Consensus 727 Itls~eEy~~L~~k---a~Eaee~a~kKVa~A~aQvEeAkese~~~l~Kle~~~~Eie~~k~aleeAleraE~Ae~aK~a 803 (910)
. -..++...+. .+..-+-..+...++..-+..+.+-+.....+.+....|+.+.+..+..+....--....-.+
T Consensus 805 ~---~~~ve~~~~~v~~~~~~~~~~~~~e~~~~k~i~e~~~~e~k~k~~~~~~~~e~~e~~k~~~~~~~~~tkl~~~i~~ 881 (1141)
T KOG0018|consen 805 T---QRRVERWERSVEDLEKEIEGLKKDEEAAEKIIAEIEELEKKNKSKFEKKEDEINEVKKILRRLVKELTKLDKEITS 881 (1141)
T ss_pred H---HHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 1 1223333332 333334445566666666666655555668899999999999999999999999999988899
Q ss_pred HHHHHHHHHHH
Q 002541 804 IEQELRKWRAE 814 (910)
Q Consensus 804 vE~ELRkwR~e 814 (910)
+|..+-++..+
T Consensus 882 ~es~ie~~~~e 892 (1141)
T KOG0018|consen 882 IESKIERKESE 892 (1141)
T ss_pred hhhHHHHHHHH
Confidence 99999988875
No 179
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=82.50 E-value=1.5e+02 Score=37.45 Aligned_cols=12 Identities=17% Similarity=0.169 Sum_probs=5.6
Q ss_pred cHHHHHHhcCCc
Q 002541 261 SVKEVVSKFGGI 272 (910)
Q Consensus 261 SVK~AvslFGe~ 272 (910)
++..++..|...
T Consensus 134 ~~~~~~~~l~~~ 145 (754)
T TIGR01005 134 ADERVLKKMREK 145 (754)
T ss_pred hHHHHHHHHHhc
Confidence 344455545444
No 180
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=82.25 E-value=77 Score=34.08 Aligned_cols=117 Identities=16% Similarity=0.274 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002541 556 KKELEEVKLNIEKATAEVNCLKVAATSLQSELEREKSALAAIRQREGMASVAVASLEAELDRTRSEIALVQMKEKEAREK 635 (910)
Q Consensus 556 kkELee~K~~Leka~eEl~sL~~~vesLrsELek~K~ELeelKeke~~a~~eI~sL~eELer~ksELe~~kakeeeare~ 635 (910)
..++..+....+.+..+++++...|..|-...++.|..+.-++.++......+..+...+........+++.--
T Consensus 68 ~~~i~~~~~erdq~~~dL~s~E~sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry~aLK~hA------ 141 (207)
T PF05010_consen 68 EAEIQKLLKERDQAYADLNSLEKSFSDLHKRYEKQKEVIEGYKKNEETLKKCIEEYEERLKKEEQRYQALKAHA------ 141 (207)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence 33444444445556666777777777777888888888888888888887777777777777777766665422
Q ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHH
Q 002541 636 TVELPKQLQVAAQEADQAKSLAQAAGEELHKAKEEAEQAKAGASTIESRLTAARKEI 692 (910)
Q Consensus 636 ~~eL~~eLqqls~EaEeAKkeae~ae~EL~~lkeEaE~aKaeI~taE~rL~aA~KEl 692 (910)
...|..+..++++.+... ..+.-.+++.+...+.++..+...+
T Consensus 142 ----eekL~~ANeei~~v~~~~----------~~e~~aLqa~lkk~e~~~~SLe~~L 184 (207)
T PF05010_consen 142 ----EEKLEKANEEIAQVRSKH----------QAELLALQASLKKEEMKVQSLEESL 184 (207)
T ss_pred ----HHHHHHHHHHHHHHHHHh----------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 235555555555554433 2344444445555555554444443
No 181
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=82.08 E-value=73 Score=33.74 Aligned_cols=62 Identities=26% Similarity=0.322 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 641 KQLQVAAQEADQAKSLAQAAGEELHKAKEEAEQAKAGASTIESRLTAARKEIEAARASEKLA 702 (910)
Q Consensus 641 ~eLqqls~EaEeAKkeae~ae~EL~~lkeEaE~aKaeI~taE~rL~aA~KElEAAKAsEa~A 702 (910)
..|+.+..-+..+...+...+.+|.+-..=++.++.-+..+...|..++.+|+..|.+-..|
T Consensus 116 ~~l~~a~~nl~~a~~~a~~AQ~el~eK~qLLeaAk~Rve~L~~QL~~Ar~D~~~tk~aA~kA 177 (188)
T PF05335_consen 116 AALKAAQANLANAEQVAEGAQQELAEKTQLLEAAKRRVEELQRQLQAARADYEKTKKAAYKA 177 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555566666666666666667777777777777777777777765554444
No 182
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=81.77 E-value=1.3e+02 Score=36.57 Aligned_cols=25 Identities=0% Similarity=-0.025 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 381 RHVAAVSELKSVKDEVESLRKDYAS 405 (910)
Q Consensus 381 q~a~~laEL~svKeELekLrqEl~~ 405 (910)
+|..+..++...+.+|.+++.+...
T Consensus 162 ~~~~~~~~~~~~~~~L~~l~~~~~~ 186 (563)
T TIGR00634 162 AYRELYQAWLKARQQLKDRQQKEQE 186 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 4555555555555555555444433
No 183
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=81.64 E-value=88 Score=34.35 Aligned_cols=44 Identities=27% Similarity=0.438 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 477 LKQAEEELQKLTQQILSA-KDLRSKLDTASALLLDLKAELSAYME 520 (910)
Q Consensus 477 L~qaEEEie~Lr~el~~a-~dLeakLeea~~~Le~Lk~ELa~~lE 520 (910)
|..+=.+|.+|..+|+.+ ..+..-|.+....|..|.+.|-.+++
T Consensus 16 LN~atd~IN~lE~~L~~ar~~fr~~l~e~~~kL~~~~kkLg~~I~ 60 (239)
T PF05276_consen 16 LNQATDEINRLENELDEARATFRRLLSESTKKLNELAKKLGSCIE 60 (239)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455544444433 33444445555555555555555544
No 184
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=81.47 E-value=54 Score=31.77 Aligned_cols=24 Identities=25% Similarity=0.357 Sum_probs=11.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 546 TDIQAAVASAKKELEEVKLNIEKA 569 (910)
Q Consensus 546 ~~l~esL~sakkELee~K~~Leka 569 (910)
.+++..|.++..+|+..|.....+
T Consensus 12 ~el~n~La~Le~slE~~K~S~~eL 35 (107)
T PF09304_consen 12 NELQNRLASLERSLEDEKTSQGEL 35 (107)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHH
Confidence 344445555555555555544443
No 185
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=81.34 E-value=1e+02 Score=35.26 Aligned_cols=128 Identities=12% Similarity=0.124 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH--HHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHH
Q 002541 571 AEVNCLKVAATSLQSELEREKSALAAIRQREGMASV--AVASLEAELDRTRSEIALVQMKEKEAREKTVELPKQLQVAAQ 648 (910)
Q Consensus 571 eEl~sL~~~vesLrsELek~K~ELeelKeke~~a~~--eI~sL~eELer~ksELe~~kakeeeare~~~eL~~eLqqls~ 648 (910)
.-..-++..+..++.+|......|...+.+.+...- ....+...+..++.++..++.+....+....+-.-.+..+..
T Consensus 170 ~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~d~~~~~~~~~~~i~~L~~~l~~~~~~l~~l~~~~~~~~P~v~~l~~ 249 (362)
T TIGR01010 170 DTIAFAENEVKEAEQRLNATKAELLKYQIKNKVFDPKAQSSAQLSLISTLEGELIRVQAQLAQLRSITPEQNPQVPSLQA 249 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchHHHHH
Confidence 344445555555555555555555555554433221 122233334444444444444444444333343334455555
Q ss_pred HHHHHHHHHHHHHHH--------HHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH
Q 002541 649 EADQAKSLAQAAGEE--------LHKAKEEAEQAKAGASTIESRLTAARKEIEAARAS 698 (910)
Q Consensus 649 EaEeAKkeae~ae~E--------L~~lkeEaE~aKaeI~taE~rL~aA~KElEAAKAs 698 (910)
++..++..+...... +.....+++.+..+.+.++..+..++.-++.++..
T Consensus 250 ~i~~l~~~i~~e~~~i~~~~~~~l~~~~~~~~~L~re~~~a~~~y~~~l~r~~~a~~~ 307 (362)
T TIGR01010 250 RIKSLRKQIDEQRNQLSGGLGDSLNEQTADYQRLVLQNELAQQQLKAALTSLQQTRVE 307 (362)
T ss_pred HHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555544433322 23334445555555555555555555555554433
No 186
>PRK11281 hypothetical protein; Provisional
Probab=81.13 E-value=2e+02 Score=38.22 Aligned_cols=44 Identities=14% Similarity=0.132 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 395 EVESLRKDYASLVTEKDIAVKKAEEAISASKEVEKTVEELTIEL 438 (910)
Q Consensus 395 ELekLrqEl~~l~eeK~~A~k~AeEA~~aak~~eekveeLt~EL 438 (910)
+|+..+.++......-.....+-+.+.....++..+..+++..+
T Consensus 136 ~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~lsea~~RlqeI~~~L 179 (1113)
T PRK11281 136 QLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLL 179 (1113)
T ss_pred HHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333334444444444444444433
No 187
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=80.99 E-value=65 Score=39.51 Aligned_cols=33 Identities=21% Similarity=0.373 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHH
Q 002541 657 AQAAGEELHKAKEEAEQAKAGASTIESRLTAAR 689 (910)
Q Consensus 657 ae~ae~EL~~lkeEaE~aKaeI~taE~rL~aA~ 689 (910)
+..++.++..|..++...+..++.++.+|..++
T Consensus 476 i~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~ 508 (652)
T COG2433 476 IRARDRRIERLEKELEEKKKRVEELERKLAELR 508 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555555555555555555555554
No 188
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=80.92 E-value=2.8 Score=47.47 Aligned_cols=123 Identities=15% Similarity=0.202 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHH
Q 002541 566 IEKATAEVNCLKVAATSLQSELEREKSALAAIRQREGMASVAVASLEAELDRTRSEIALVQMKEKEAREKTVELPKQLQV 645 (910)
Q Consensus 566 Leka~eEl~sL~~~vesLrsELek~K~ELeelKeke~~a~~eI~sL~eELer~ksELe~~kakeeeare~~~eL~~eLqq 645 (910)
|..+.+++..|+..+.+|..-+..+...+..+.-.++.....+..+..+|..+...+..++.........+.+|...+..
T Consensus 30 Ls~I~eRLsaLEssv~sL~~SVs~lss~iSdLss~L~~l~~sl~~~~s~L~sLsstV~~lq~Sl~~lsssVs~lS~~ls~ 109 (326)
T PF04582_consen 30 LSPIRERLSALESSVASLSDSVSSLSSTISDLSSDLQDLASSLADMTSELNSLSSTVTSLQSSLSSLSSSVSSLSSTLSD 109 (326)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhh
Confidence 34444445555555555555555555555555555555555555555556555555555555555555555666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHH
Q 002541 646 AAQEADQAKSLAQAAGEELHKAKEEAEQAKAGASTIESRLTAA 688 (910)
Q Consensus 646 ls~EaEeAKkeae~ae~EL~~lkeEaE~aKaeI~taE~rL~aA 688 (910)
....+-.+......+...+.+++...-.....|..++.|+.++
T Consensus 110 h~ssIS~Lqs~v~~lsTdvsNLksdVSt~aL~ItdLe~RV~~L 152 (326)
T PF04582_consen 110 HSSSISDLQSSVSALSTDVSNLKSDVSTQALNITDLESRVKAL 152 (326)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHhhhhhhhhhhhhhhhhhhhcchHhhHHHHHHHH
Confidence 6666666777777777777777777777777777777777654
No 189
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=80.46 E-value=21 Score=37.50 Aligned_cols=28 Identities=14% Similarity=0.194 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHHH
Q 002541 664 LHKAKEEAEQAKAGASTIESRLTAARKE 691 (910)
Q Consensus 664 L~~lkeEaE~aKaeI~taE~rL~aA~KE 691 (910)
+..+..|+..+.....-++.++..++.|
T Consensus 146 ~e~l~DE~~~L~l~~~~~e~k~~~l~~E 173 (194)
T PF08614_consen 146 NEILQDELQALQLQLNMLEEKLRKLEEE 173 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444444333
No 190
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=80.43 E-value=95 Score=39.22 Aligned_cols=91 Identities=21% Similarity=0.234 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh------hhhhhhHHHHHHHHHHHHHHH
Q 002541 310 AEVAKNQVLKELDQTKRLVEELKLNLERAQTEEHQAKQDSELAKLRVEEMEQG------IADDASVAARAQLEVAKARHV 383 (910)
Q Consensus 310 aE~~k~qal~ELe~aKr~ieeL~~kLE~a~~e~~~A~e~sE~ak~r~~ELEqg------ia~~~~~a~k~eLE~ar~q~a 383 (910)
....+.+-+.+|...+..++.|...-+++...-+.|.+.-+.-..|++.+=+. .-......|+.||+.++.+..
T Consensus 570 Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l~~~~P~LS~AEr~~~~EL~~~~~~l~ 649 (717)
T PF10168_consen 570 LKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLLNSQLPVLSEAEREFKKELERMKDQLQ 649 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444443333333333333333344333221 112334678888887777765
Q ss_pred HHHHHHHHHHHHHHHHH
Q 002541 384 AAVSELKSVKDEVESLR 400 (910)
Q Consensus 384 ~~laEL~svKeELekLr 400 (910)
..-.-++.+|..+++.+
T Consensus 650 ~l~~si~~lk~k~~~Q~ 666 (717)
T PF10168_consen 650 DLKASIEQLKKKLDYQQ 666 (717)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55555555555555543
No 191
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=80.06 E-value=45 Score=39.53 Aligned_cols=36 Identities=8% Similarity=0.114 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 665 HKAKEEAEQAKAGASTIESRLTAARKEIEAARASEK 700 (910)
Q Consensus 665 ~~lkeEaE~aKaeI~taE~rL~aA~KElEAAKAsEa 700 (910)
...-.+++.+..+..=++..+..++.-+|.||.-..
T Consensus 347 a~~laeYe~L~le~efAe~~y~sAlaaLE~AR~EA~ 382 (434)
T PRK15178 347 SESLSLFEDLRLQSEIAKARWESALQTLQQGKLQAL 382 (434)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567777777777788888888888887765433
No 192
>PTZ00121 MAEBL; Provisional
Probab=79.92 E-value=2.4e+02 Score=38.30 Aligned_cols=18 Identities=28% Similarity=0.228 Sum_probs=9.6
Q ss_pred ccCCccccCCC-cccchhh
Q 002541 145 RIEPSDKLALP-HTELASI 162 (910)
Q Consensus 145 ~~~~~~~~~~~-~~~~~~~ 162 (910)
+|-|.-+..-| +-.|-+.
T Consensus 901 fiRPDyEtKCPPR~PLkn~ 919 (2084)
T PTZ00121 901 FIRPDYEEKCPPRFPLKSK 919 (2084)
T ss_pred ccCCcccccCCCCCCCCCC
Confidence 34455555555 5555553
No 193
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=79.83 E-value=50 Score=30.40 Aligned_cols=84 Identities=17% Similarity=0.207 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 378 AKARHVAAVSELKSVKDEVESLRKDYASLVTEKDIAV-----KKAEEAISASKEVEKTVEELTIELIATKESLESAHAAH 452 (910)
Q Consensus 378 ar~q~a~~laEL~svKeELekLrqEl~~l~eeK~~A~-----k~AeEA~~aak~~eekveeLt~EL~~lKEsLe~a~aa~ 452 (910)
++..++.+..++......|..|...+........... ........-...+...+..+..++..++..++......
T Consensus 3 a~~~l~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~~l 82 (123)
T PF02050_consen 3 AEQELAEAQQELQEAEEQLEQLQQERQEYQEQLSESQQGVSVAQLRNYQRYISALEQAIQQQQQELERLEQEVEQAREEL 82 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----SGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345666666666666666666666666644433333 44444455566677777777777777777766666655
Q ss_pred HHHHHHHHH
Q 002541 453 LEAEEQRIG 461 (910)
Q Consensus 453 ~eAEe~r~~ 461 (910)
..+......
T Consensus 83 ~~a~~~~k~ 91 (123)
T PF02050_consen 83 QEARRERKK 91 (123)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 554443333
No 194
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=79.80 E-value=2.3e+02 Score=38.02 Aligned_cols=40 Identities=18% Similarity=0.212 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHH
Q 002541 581 TSLQSELEREKSALAAIRQREGMASVAVASLEAELDRTRSEI 622 (910)
Q Consensus 581 esLrsELek~K~ELeelKeke~~a~~eI~sL~eELer~ksEL 622 (910)
..|.+++.....++..+..+...+. +....++..++..+.
T Consensus 1011 ~~l~~q~~e~~re~~~ld~Qi~~~~--~~~~~ee~~~L~~~~ 1050 (1294)
T KOG0962|consen 1011 RNLERKLKELERELSELDKQILEAD--IKSVKEERVKLEEER 1050 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHH
Confidence 3444555555555555544444433 333333444443333
No 195
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=79.57 E-value=1.1e+02 Score=34.15 Aligned_cols=161 Identities=18% Similarity=0.240 Sum_probs=78.0
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhHHHHHHHHHHHHh-hhh
Q 002541 290 EQELERSHEEMPEYRKRSEAAEVAKNQVLKELDQTKRLVEELKLNLERAQTEEHQAK----QDSELAKLRVEEMEQ-GIA 364 (910)
Q Consensus 290 e~EL~~~qeeL~k~Keqle~aE~~k~qal~ELe~aKr~ieeL~~kLE~a~~e~~~A~----e~sE~ak~r~~ELEq-gia 364 (910)
+.+|..++++...+..+++........+......++..++++..+|+.++.+-.... +.-+..+-|++-|+. |-.
T Consensus 37 ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRAmq~nG~~ 116 (265)
T COG3883 37 DSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARAMQVNGTA 116 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCh
Confidence 334555555555555555555555555555555555555555555555555422222 222345556666653 111
Q ss_pred hh-hhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 365 DD-ASVAARA-QLEVAKARHVAAVSELKSVKDEVESLRKDYASLVTEKDIAVKKAEEAISASKEVEKTVEELTIELIATK 442 (910)
Q Consensus 365 ~~-~~~a~k~-eLE~ar~q~a~~laEL~svKeELekLrqEl~~l~eeK~~A~k~AeEA~~aak~~eekveeLt~EL~~lK 442 (910)
.- -++.+.. -+--.=.|...+-.-.+.=+.-|+..+.+-..+-..+..-....+.+..-...++..+..|+......+
T Consensus 117 t~Yidvil~SkSfsD~IsRvtAi~~iv~aDk~ile~qk~dk~~Le~kq~~l~~~~e~l~al~~e~e~~~~~L~~qk~e~~ 196 (265)
T COG3883 117 TSYIDVILNSKSFSDLISRVTAISVIVDADKKILEQQKEDKKSLEEKQAALEDKLETLVALQNELETQLNSLNSQKAEKN 196 (265)
T ss_pred hHHHHHHHccCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 0000000 000011123333333334445555555555555555555555666666666666666666666666666
Q ss_pred HHHHHHHH
Q 002541 443 ESLESAHA 450 (910)
Q Consensus 443 EsLe~a~a 450 (910)
..+..+.+
T Consensus 197 ~l~~~~aa 204 (265)
T COG3883 197 ALIAALAA 204 (265)
T ss_pred HHHHHHHH
Confidence 65555443
No 196
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=79.39 E-value=66 Score=38.66 Aligned_cols=57 Identities=18% Similarity=0.183 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHH
Q 002541 569 ATAEVNCLKVAATSLQSELEREKSALAAIRQREGMASVAVASLEAELDRTRSEIALV 625 (910)
Q Consensus 569 a~eEl~sL~~~vesLrsELek~K~ELeelKeke~~a~~eI~sL~eELer~ksELe~~ 625 (910)
...++......+.++..+|...-.++....+....+.+.+..+..++.-+.-+.+.+
T Consensus 203 ~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel 259 (596)
T KOG4360|consen 203 CVKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEEL 259 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 334455555555556666666666666666666666666666666665555554433
No 197
>PRK10884 SH3 domain-containing protein; Provisional
Probab=78.71 E-value=23 Score=37.84 Aligned_cols=73 Identities=11% Similarity=0.218 Sum_probs=39.7
Q ss_pred HHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 002541 283 VERRKYVEQELERSHEEMPEYRKRSEAAEVAKNQVLKELDQTKRLVEELKLNLERAQTEEHQAKQDSELAKLRVEE 358 (910)
Q Consensus 283 ~ER~~~~e~EL~~~qeeL~k~Keqle~aE~~k~qal~ELe~aKr~ieeL~~kLE~a~~e~~~A~e~sE~ak~r~~E 358 (910)
.+|...++.||..++.+|.....+.. ..++.....+...+..+.+|.....+++.+...+....+..+.+...
T Consensus 92 ~~rlp~le~el~~l~~~l~~~~~~~~---~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~ 164 (206)
T PRK10884 92 RTRVPDLENQVKTLTDKLNNIDNTWN---QRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDD 164 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667777777666666665533 33444455555556666666666655555544444443333333333
No 198
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=78.63 E-value=1.1e+02 Score=33.43 Aligned_cols=59 Identities=24% Similarity=0.293 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhh
Q 002541 652 QAKSLAQAAGEELHKAKEEAEQAKAGASTIESRLTAARKEI--EAARASEKLALAAIKALQ 710 (910)
Q Consensus 652 eAKkeae~ae~EL~~lkeEaE~aKaeI~taE~rL~aA~KEl--EAAKAsEa~Ala~ikaL~ 710 (910)
.+...+...+..+..+..-.+.++..+..++.+|....... ..|+.+.+.|-..|.-..
T Consensus 96 ~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~~~akA~~~v~~~~ 156 (225)
T COG1842 96 SLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALKARKAAAKAQEKVNRSL 156 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444455566666666666666777777777776655555 344444555555555444
No 199
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=78.08 E-value=32 Score=42.01 Aligned_cols=49 Identities=22% Similarity=0.312 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002541 554 SAKKELEEVKLNIEKATAEVNCLKVAATSLQSELEREKSALAAIRQREG 602 (910)
Q Consensus 554 sakkELee~K~~Leka~eEl~sL~~~vesLrsELek~K~ELeelKeke~ 602 (910)
...+++..+...++....++..|+..++.++.+++.++.+|+.++.+..
T Consensus 419 ~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~ 467 (652)
T COG2433 419 VYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVR 467 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666667766666666666666666666666554433
No 200
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=77.68 E-value=90 Score=32.13 Aligned_cols=86 Identities=16% Similarity=0.295 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHH
Q 002541 572 EVNCLKVAATSLQSELEREKSALAAIRQREGMASVAVASLEAELDRTRSEIALVQMKEKEAREKTVELPKQLQVAAQEAD 651 (910)
Q Consensus 572 El~sL~~~vesLrsELek~K~ELeelKeke~~a~~eI~sL~eELer~ksELe~~kakeeeare~~~eL~~eLqqls~EaE 651 (910)
+-.+++.....|...|+.-..+|..++...+.....+..+.+.+.-+..++..++............+...+..+..+.+
T Consensus 43 DFeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~ 122 (177)
T PF13870_consen 43 DFEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERD 122 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555556666666666666666655555555555555555555555554444444433344444444444444
Q ss_pred HHHHHH
Q 002541 652 QAKSLA 657 (910)
Q Consensus 652 eAKkea 657 (910)
.++...
T Consensus 123 k~~~~~ 128 (177)
T PF13870_consen 123 KLRKQN 128 (177)
T ss_pred HHHHHH
Confidence 433333
No 201
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=77.50 E-value=1.8e+02 Score=35.51 Aligned_cols=45 Identities=18% Similarity=0.276 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Q 002541 317 VLKELDQTKRLVEELKLNLERAQTEEHQAKQDSELAKLRVEEMEQ 361 (910)
Q Consensus 317 al~ELe~aKr~ieeL~~kLE~a~~e~~~A~e~sE~ak~r~~ELEq 361 (910)
.+.++..+...+.++...|++++.......+..+..++++.||+.
T Consensus 159 ~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~ELe~ 203 (563)
T TIGR00634 159 KVKAYRELYQAWLKARQQLKDRQQKEQELAQRLDFLQFQLEELEE 203 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHh
Confidence 444444445555555555666666666666777788899999986
No 202
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=76.91 E-value=1.5e+02 Score=35.27 Aligned_cols=98 Identities=10% Similarity=0.089 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Q 002541 576 LKVAATSLQSELEREKSALAAIRQREGMASVAVASLEAELDRTRSEIALVQMKEKEAREKTVELPKQLQVAAQEADQAKS 655 (910)
Q Consensus 576 L~~~vesLrsELek~K~ELeelKeke~~a~~eI~sL~eELer~ksELe~~kakeeeare~~~eL~~eLqqls~EaEeAKk 655 (910)
.+..++.+..+....+.+..-+.............+...+.++..++...++.. ...+.++.....+++..-+..+.
T Consensus 352 ~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n---~~l~knq~vw~~kl~~~~e~~~~ 428 (493)
T KOG0804|consen 352 QKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREEN---KKLIKNQDVWRGKLKELEEREKE 428 (493)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhhHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333334444444445555555555554443221 22333445555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 002541 656 LAQAAGEELHKAKEEAEQAKA 676 (910)
Q Consensus 656 eae~ae~EL~~lkeEaE~aKa 676 (910)
........+.+|++..-++-.
T Consensus 429 ~~~s~d~~I~dLqEQlrDlmf 449 (493)
T KOG0804|consen 429 ALGSKDEKITDLQEQLRDLMF 449 (493)
T ss_pred HHHHHHHHHHHHHHHHHhHhe
Confidence 555555555555555544433
No 203
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=76.62 E-value=69 Score=36.57 Aligned_cols=53 Identities=25% Similarity=0.259 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHH
Q 002541 575 CLKVAATSLQSELEREKSALAAIRQREGMASVAVASLEAELDRTRSEIALVQM 627 (910)
Q Consensus 575 sL~~~vesLrsELek~K~ELeelKeke~~a~~eI~sL~eELer~ksELe~~ka 627 (910)
.....+..|+.++...+.++..++.......=.+..+..++..++..|.....
T Consensus 211 ~~~~~i~~L~~~l~~~~~~l~~l~~~~~~~~P~v~~l~~~i~~l~~~i~~e~~ 263 (362)
T TIGR01010 211 AQLSLISTLEGELIRVQAQLAQLRSITPEQNPQVPSLQARIKSLRKQIDEQRN 263 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHHHHHHH
Confidence 34445677777777777777777766666566677777777777666655443
No 204
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=76.60 E-value=43 Score=37.34 Aligned_cols=62 Identities=31% Similarity=0.460 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 002541 423 ASKEVEKTVEELTIELIATKESLESAHAAHLEAEEQRIGAAMARDQDSHLWEKELKQAEEELQKLTQQILSAKDLRSKLD 502 (910)
Q Consensus 423 aak~~eekveeLt~EL~~lKEsLe~a~aa~~eAEe~r~~v~la~eqd~~~~e~eL~qaEEEie~Lr~el~~a~dLeakLe 502 (910)
.+..-+.++.+|+.+|.+|+| .-++-|=+|.++-| -|+++..||++|++-|+ .+++-|.
T Consensus 83 ~l~dRetEI~eLksQL~RMrE-------DWIEEECHRVEAQL-----------ALKEARkEIkQLkQvie---TmrssL~ 141 (305)
T PF15290_consen 83 RLHDRETEIDELKSQLARMRE-------DWIEEECHRVEAQL-----------ALKEARKEIKQLKQVIE---TMRSSLA 141 (305)
T ss_pred HHHhhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHH---HHHhhhc
Confidence 334444455555555555554 44443434444322 46888888998888765 6666666
Q ss_pred HHH
Q 002541 503 TAS 505 (910)
Q Consensus 503 ea~ 505 (910)
..+
T Consensus 142 ekD 144 (305)
T PF15290_consen 142 EKD 144 (305)
T ss_pred hhh
Confidence 653
No 205
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=76.50 E-value=1.6e+02 Score=34.37 Aligned_cols=46 Identities=24% Similarity=0.371 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHH
Q 002541 579 AATSLQSELEREKSALAAIRQREGMASVAVASLEAELDRTRSEIAL 624 (910)
Q Consensus 579 ~vesLrsELek~K~ELeelKeke~~a~~eI~sL~eELer~ksELe~ 624 (910)
.+..|+.+|.....++..+..++....-.+..+..++..++..|..
T Consensus 255 ~i~~l~~~l~~le~~l~~l~~~y~~~hP~v~~l~~~i~~l~~~l~~ 300 (444)
T TIGR03017 255 IIQNLKTDIARAESKLAELSQRLGPNHPQYKRAQAEINSLKSQLNA 300 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHH
Confidence 3567888888888888888888888777788888887777776643
No 206
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=76.34 E-value=80 Score=34.45 Aligned_cols=48 Identities=10% Similarity=0.149 Sum_probs=28.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 546 TDIQAAVASAKKELEEVKLNIEKATAEVNCLKVAATSLQSELEREKSA 593 (910)
Q Consensus 546 ~~l~esL~sakkELee~K~~Leka~eEl~sL~~~vesLrsELek~K~E 593 (910)
.+.......+..|-...-..|..+..+++.|...+.+++.+..+.+..
T Consensus 35 ~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~ 82 (230)
T PF10146_consen 35 EEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEK 82 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444555555566667777777777776666666655555544
No 207
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=76.12 E-value=65 Score=34.09 Aligned_cols=54 Identities=22% Similarity=0.258 Sum_probs=33.2
Q ss_pred HhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHH
Q 002541 634 EKTVELPKQLQVAAQEADQAKSLAQAAGEELHKAKEEAEQAKAGASTIESRLTA 687 (910)
Q Consensus 634 e~~~eL~~eLqqls~EaEeAKkeae~ae~EL~~lkeEaE~aKaeI~taE~rL~a 687 (910)
..+.+|...|-++......++.+.+....++..++..+..++.++..++.+.+.
T Consensus 131 ~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~~F~~ 184 (190)
T PF05266_consen 131 SEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAELEFQS 184 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555556666666666666666666666666666666666666665544
No 208
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=75.49 E-value=78 Score=35.31 Aligned_cols=65 Identities=15% Similarity=0.280 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHH
Q 002541 562 VKLNIEKATAEVNCLKVAATSLQSELEREKSALAAIRQREGMASVAVASLEAELDRTRSEIALVQ 626 (910)
Q Consensus 562 ~K~~Leka~eEl~sL~~~vesLrsELek~K~ELeelKeke~~a~~eI~sL~eELer~ksELe~~k 626 (910)
+..+++.+...+..+......|...+++.+.+|+..+.++....+-.-...+|.+++..||..+-
T Consensus 174 ~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~lY 238 (267)
T PF10234_consen 174 VQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKLY 238 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHH
Confidence 33444444445555555555666888888888888888888888888888888888888776554
No 209
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=75.42 E-value=1.4e+02 Score=33.35 Aligned_cols=8 Identities=63% Similarity=0.742 Sum_probs=4.9
Q ss_pred HHHHHhhh
Q 002541 704 AAIKALQE 711 (910)
Q Consensus 704 a~ikaL~e 711 (910)
+++++|.-
T Consensus 183 ~e~k~lq~ 190 (307)
T PF10481_consen 183 AEVKALQA 190 (307)
T ss_pred HHHHHHhc
Confidence 45677763
No 210
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=74.21 E-value=3.4e+02 Score=37.03 Aligned_cols=62 Identities=23% Similarity=0.193 Sum_probs=28.5
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHH
Q 002541 752 VVAAISQIEVAKASELRSLERLEEVNKEIATRKEALKVAMEKAEKAKEGKLGIEQELRKWRAE 814 (910)
Q Consensus 752 Va~A~aQvEeAkese~~~l~Kle~~~~Eie~~k~aleeAleraE~Ae~aK~avE~ELRkwR~e 814 (910)
+....++++.+...-......+..+.++......++..+.++...+ ......+.+.+.|...
T Consensus 923 ~eel~a~L~e~r~rL~~l~~el~~~~~~~~~a~~~~~~a~~~~~~a-~~~~~~~~~~~~~~~~ 984 (1353)
T TIGR02680 923 VDEIRARLAETRAALASGGRELPRLAEALATAEEARGRAEEKRAEA-DATLDERAEARDHAIG 984 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444444444555555444222 2333444455555543
No 211
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=74.14 E-value=1.4e+02 Score=32.67 Aligned_cols=18 Identities=6% Similarity=0.075 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 002541 645 VAAQEADQAKSLAQAAGE 662 (910)
Q Consensus 645 qls~EaEeAKkeae~ae~ 662 (910)
.+...+++|+..+..++.
T Consensus 124 ~l~~~l~ea~~mL~emr~ 141 (264)
T PF06008_consen 124 DLQRALAEAQRMLEEMRK 141 (264)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 344444444444444443
No 212
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.01 E-value=2.2e+02 Score=34.79 Aligned_cols=45 Identities=18% Similarity=0.078 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Q 002541 317 VLKELDQTKRLVEELKLNLERAQTEEHQAKQDSELAKLRVEEMEQ 361 (910)
Q Consensus 317 al~ELe~aKr~ieeL~~kLE~a~~e~~~A~e~sE~ak~r~~ELEq 361 (910)
.+.|+..+++++-=|...+.......+-+++....-..++++|..
T Consensus 234 ~~ae~~~~~~e~~llr~t~~~~e~riEtqkqtl~ardesIkkLlE 278 (654)
T KOG4809|consen 234 RLAELLTTKEEQFLLRSTDPSGEQRIETQKQTLDARDESIKKLLE 278 (654)
T ss_pred HHHHhhhHHHHHHHHHhcCchHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 556666666666666555555555544455555444455555543
No 213
>COG3524 KpsE Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=73.62 E-value=92 Score=35.37 Aligned_cols=46 Identities=15% Similarity=0.254 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHH
Q 002541 579 AATSLQSELEREKSALAAIRQREGMASVAVASLEAELDRTRSEIAL 624 (910)
Q Consensus 579 ~vesLrsELek~K~ELeelKeke~~a~~eI~sL~eELer~ksELe~ 624 (910)
.+..|.+||-.....|..++..-+...=+|..|...++.++.+|..
T Consensus 224 Lvs~Le~eL~~iqaqL~tvks~m~~~nPqi~~LkarieSlrkql~q 269 (372)
T COG3524 224 LVSKLEDELIVIQAQLDTVKSVMNPENPQIPGLKARIESLRKQLLQ 269 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHH
Confidence 3455666666666666666665555555555555555555555533
No 214
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=73.55 E-value=78 Score=40.31 Aligned_cols=42 Identities=19% Similarity=0.212 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 300 MPEYRKRSEAAEVAKNQVLKELDQTKRLVEELKLNLERAQTE 341 (910)
Q Consensus 300 L~k~Keqle~aE~~k~qal~ELe~aKr~ieeL~~kLE~a~~e 341 (910)
+.++++-+..-......++.+|+.-++.+++....++....+
T Consensus 504 i~~A~~~~~~~~~~~~~li~~l~~~~~~~e~~~~~~~~~~~e 545 (782)
T PRK00409 504 IEEAKKLIGEDKEKLNELIASLEELERELEQKAEEAEALLKE 545 (782)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555566666666666655555555555444
No 215
>PF11570 E2R135: Coiled-coil receptor-binding R-domain of colicin E2; InterPro: IPR024566 Bacteriocins are protein antibiotics that kill bacteria closely related to the producing species. Colicins are a subgroup of bacteriocins that are produced by and target Escherichia coli. The lethal action of most colicins is exerted either by formation of a pore in the cytoplasmic membrane of the target cell, or by an enzymatic nuclease digestion mechanism. Most colicins are able to translocate the outer membrane by a two-receptor system, where one receptor is used for the initial binding and the second for translocation. The initial binding is to cell surface receptors such as the porins OmpF, FepA, BtuB, Cir and FhuA. The presence of specific periplasmic proteins, such as TolA, TolB, TolC, or TonB, are required for translocation across the membrane []. Colicins are composed of domains with distinct functional roles. In general they contain a central R (receptor) domain that mediates receptor binding, an N-terminal T (translocation) domain that mediates translocation of the protein from the outer membrane receptor to the colicin's target within the cell, and a C-terminal C (catalytic) domain that performs the catalytic cleavage []. This entry represents the central R domain found in colicin-E2 and other colicins.; PDB: 2YSU_B 1UJW_B 2B5U_C 1JCH_A.
Probab=73.40 E-value=1e+02 Score=30.81 Aligned_cols=38 Identities=24% Similarity=0.318 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcH
Q 002541 641 KQLQVAAQEADQAKSLAQAAGEELHKAKEEAEQAKAGA 678 (910)
Q Consensus 641 ~eLqqls~EaEeAKkeae~ae~EL~~lkeEaE~aKaeI 678 (910)
..++.+..++.+-+..+..++.++..+.+++-..+..|
T Consensus 77 lkvr~a~~dv~nkq~~l~AA~~~l~~~~~el~~~~~al 114 (136)
T PF11570_consen 77 LKVRRAQKDVQNKQNKLKAAQKELNAADEELNRIQAAL 114 (136)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 34444444544444444444444444444443333333
No 216
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=73.39 E-value=1e+02 Score=30.79 Aligned_cols=87 Identities=24% Similarity=0.358 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002541 384 AAVSELKSVKDEVESLRKDYASLVTEKDIAVKKAEEAISASKEVEKTVEELTIELIATKESLESAHAAHLEAEEQRIGAA 463 (910)
Q Consensus 384 ~~laEL~svKeELekLrqEl~~l~eeK~~A~k~AeEA~~aak~~eekveeLt~EL~~lKEsLe~a~aa~~eAEe~r~~v~ 463 (910)
..-.++...+..+++|+.+++.+-.+-..+......+....+.....+..+..++..++-.+......|
T Consensus 63 ~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~~tq~----------- 131 (151)
T PF11559_consen 63 RLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQRKTQY----------- 131 (151)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------
Confidence 333444444555555555555555555555555555555566666666666666666666655544433
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 002541 464 MARDQDSHLWEKELKQAEEELQKLTQQI 491 (910)
Q Consensus 464 la~eqd~~~~e~eL~qaEEEie~Lr~el 491 (910)
..+++..+-++++|...|
T Consensus 132 ----------~~e~rkke~E~~kLk~rL 149 (151)
T PF11559_consen 132 ----------EHELRKKEREIEKLKERL 149 (151)
T ss_pred ----------HHHHHHHHHHHHHHHHHh
Confidence 345666677777766653
No 217
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=73.31 E-value=2.6e+02 Score=35.42 Aligned_cols=94 Identities=17% Similarity=0.229 Sum_probs=50.3
Q ss_pred HHHHHHHHHHhhHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH----HHHHH
Q 002541 288 YVEQELERSHEEMPEYRKRS---------EAAEVAKNQVLKELDQTKRLVEELKLNLERAQTEEHQAKQDS----ELAKL 354 (910)
Q Consensus 288 ~~e~EL~~~qeeL~k~Keql---------e~aE~~k~qal~ELe~aKr~ieeL~~kLE~a~~e~~~A~e~s----E~ak~ 354 (910)
.++.+|+.+++++-++|+.. +..+.-+..+..+|..|=. .-.|+.+|..++.+-..|.-.- -....
T Consensus 433 ~Le~elekLk~eilKAk~s~~~~~~~~L~e~IeKLk~E~d~e~S~A~~-~~gLk~kL~~Lr~E~sKa~~~~~~~~~~L~e 511 (762)
T PLN03229 433 ELEGEVEKLKEQILKAKESSSKPSELALNEMIEKLKKEIDLEYTEAVI-AMGLQERLENLREEFSKANSQDQLMHPVLME 511 (762)
T ss_pred cHHHHHHHHHHHHHhcccccCCCCChHHHHHHHHHHHHHHHHHHHhhh-hhhHHHHHHHHHHHHHhcccccccccHHHHH
Confidence 47778888888888886211 2233333344444444432 2457888888887766653200 00122
Q ss_pred HHHHHH----hhhhhh-hhHHHHHHHHHHHHHH
Q 002541 355 RVEEME----QGIADD-ASVAARAQLEVAKARH 382 (910)
Q Consensus 355 r~~ELE----qgia~~-~~~a~k~eLE~ar~q~ 382 (910)
++..|. +.+..- ....+|..|+..+..+
T Consensus 512 K~~kLk~Efnkkl~ea~n~p~lk~Kle~Lk~~~ 544 (762)
T PLN03229 512 KIEKLKDEFNKRLSRAPNYLSLKYKLDMLNEFS 544 (762)
T ss_pred HHHHHHHHHHHhhhcccccHHHHHHHHHHHHHH
Confidence 344333 333331 1246777887777654
No 218
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=73.16 E-value=83 Score=40.04 Aligned_cols=41 Identities=15% Similarity=0.161 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 301 PEYRKRSEAAEVAKNQVLKELDQTKRLVEELKLNLERAQTE 341 (910)
Q Consensus 301 ~k~Keqle~aE~~k~qal~ELe~aKr~ieeL~~kLE~a~~e 341 (910)
..+++-+..-......++.+|+.-++.+++....+++...+
T Consensus 500 ~~A~~~~~~~~~~~~~li~~L~~~~~~~e~~~~~~~~~~~e 540 (771)
T TIGR01069 500 EQAKTFYGEFKEEINVLIEKLSALEKELEQKNEHLEKLLKE 540 (771)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444455556666666666655555555555444
No 219
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=73.14 E-value=51 Score=35.71 Aligned_cols=18 Identities=28% Similarity=0.255 Sum_probs=6.9
Q ss_pred HHhHHHHHHHHHHHHHHH
Q 002541 608 VASLEAELDRTRSEIALV 625 (910)
Q Consensus 608 I~sL~eELer~ksELe~~ 625 (910)
-..|..++..+..+++.+
T Consensus 151 keeL~~eleele~e~ee~ 168 (290)
T COG4026 151 KEELLKELEELEAEYEEV 168 (290)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333444443333333
No 220
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=73.07 E-value=3.3e+02 Score=36.38 Aligned_cols=20 Identities=10% Similarity=0.059 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 002541 384 AAVSELKSVKDEVESLRKDY 403 (910)
Q Consensus 384 ~~laEL~svKeELekLrqEl 403 (910)
....+|..+++++...+..+
T Consensus 113 ~~~~~L~~~q~~l~~~~~~~ 132 (1109)
T PRK10929 113 QVSSQLLEKSRQAQQEQDRA 132 (1109)
T ss_pred HHHHHHHHHHHHHHHHhhhh
Confidence 33334444444444444444
No 221
>PF11570 E2R135: Coiled-coil receptor-binding R-domain of colicin E2; InterPro: IPR024566 Bacteriocins are protein antibiotics that kill bacteria closely related to the producing species. Colicins are a subgroup of bacteriocins that are produced by and target Escherichia coli. The lethal action of most colicins is exerted either by formation of a pore in the cytoplasmic membrane of the target cell, or by an enzymatic nuclease digestion mechanism. Most colicins are able to translocate the outer membrane by a two-receptor system, where one receptor is used for the initial binding and the second for translocation. The initial binding is to cell surface receptors such as the porins OmpF, FepA, BtuB, Cir and FhuA. The presence of specific periplasmic proteins, such as TolA, TolB, TolC, or TonB, are required for translocation across the membrane []. Colicins are composed of domains with distinct functional roles. In general they contain a central R (receptor) domain that mediates receptor binding, an N-terminal T (translocation) domain that mediates translocation of the protein from the outer membrane receptor to the colicin's target within the cell, and a C-terminal C (catalytic) domain that performs the catalytic cleavage []. This entry represents the central R domain found in colicin-E2 and other colicins.; PDB: 2YSU_B 1UJW_B 2B5U_C 1JCH_A.
Probab=72.59 E-value=1.1e+02 Score=30.68 Aligned_cols=117 Identities=20% Similarity=0.292 Sum_probs=68.8
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH-HHh---hhh
Q 002541 289 VEQELERSHEEMPEYRKRSEAAEVAKNQVLKELDQTKRLVEELKLNLERAQTEEHQAKQDSELAKLRVEE-MEQ---GIA 364 (910)
Q Consensus 289 ~e~EL~~~qeeL~k~Keqle~aE~~k~qal~ELe~aKr~ieeL~~kLE~a~~e~~~A~e~sE~ak~r~~E-LEq---gia 364 (910)
-..||..++++|+.....+..++........+|+.+-+.+.+...++. . +++.. |.. +..
T Consensus 13 a~aeL~~a~~~I~~~q~r~a~a~~~~~~r~seldqA~~~~~eae~k~~------------~----~~a~~P~~~~~~~wq 76 (136)
T PF11570_consen 13 ARAELDQADEDIATLQERQASAEQALNGRRSELDQANKKVKEAEIKQD------------E----FFANNPPHEYGRGWQ 76 (136)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------------C----CCTT-TTSSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhccc------------c----cccCCCccccccHHH
Confidence 456789999999999999999988888888888877777666332210 0 11100 000 000
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 365 DDASVAARAQLEVAKARHVAAVSELKSVKDEVESLRKDYASLVTEKDIAVKKAEEAIS 422 (910)
Q Consensus 365 ~~~~~a~k~eLE~ar~q~a~~laEL~svKeELekLrqEl~~l~eeK~~A~k~AeEA~~ 422 (910)
.....|+..+..-..++..+-.+|-.+-.+|...+.-+..+.+.+.....+.++++.
T Consensus 77 -lkvr~a~~dv~nkq~~l~AA~~~l~~~~~el~~~~~al~~A~e~Rkq~eskk~dAen 133 (136)
T PF11570_consen 77 -LKVRRAQKDVQNKQNKLKAAQKELNAADEELNRIQAALSQAMERRKQKESKKKDAEN 133 (136)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHCCCH
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhhhhhh
Confidence 111235555555555667777777777777777777777777777777776666543
No 222
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=72.13 E-value=1.5e+02 Score=32.06 Aligned_cols=109 Identities=17% Similarity=0.257 Sum_probs=63.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccCCCCCCchhhhhhhhHHHHHHHHHHHHHHHHH
Q 002541 484 LQKLTQQILSAKDLRSKLDTASALLLDLKAELSAYMESKLKEESNEEGHSNGELEEPERKTHTDIQAAVASAKKELEEVK 563 (910)
Q Consensus 484 ie~Lr~el~~a~dLeakLeea~~~Le~Lk~ELa~~lE~kL~e~~~ei~~lq~~L~E~ek~~~~~l~esL~sakkELee~K 563 (910)
++.....-.....|+..+..+-..+..++.+|...-.. .. .. .....+.....+...|......|....
T Consensus 30 L~~~~~~~~~~~~~~~~i~~aP~~~~~l~~~l~~l~~~-~~-~~---------~~~~~~~s~~eLeq~l~~~~~~L~~~q 98 (240)
T PF12795_consen 30 LDEIKKQKKRAAEYQKQIDQAPKEIRELQKELEALKSQ-DA-PS---------KEILANLSLEELEQRLSQEQAQLQELQ 98 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhcc-cc-cc---------ccCcccCCHHHHHHHHHHHHHHHHHHH
Confidence 33333333344566666777777777777776443232 00 00 011223344566666667777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002541 564 LNIEKATAEVNCLKVAATSLQSELEREKSALAAIRQREGM 603 (910)
Q Consensus 564 ~~Leka~eEl~sL~~~vesLrsELek~K~ELeelKeke~~ 603 (910)
..|......+..+...-+.++..|...+..+..+...+..
T Consensus 99 ~~l~~~~~~l~~~~~~p~~aq~~l~~~~~~l~ei~~~L~~ 138 (240)
T PF12795_consen 99 EQLQQENSQLIEIQTRPERAQQQLSEARQRLQEIRNQLQN 138 (240)
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 7777777777777766666666666666666666665554
No 223
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=72.06 E-value=2.3e+02 Score=34.35 Aligned_cols=25 Identities=20% Similarity=0.248 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 562 VKLNIEKATAEVNCLKVAATSLQSE 586 (910)
Q Consensus 562 ~K~~Leka~eEl~sL~~~vesLrsE 586 (910)
+..+|.....+...++..+.-|+.|
T Consensus 164 L~ekLk~~~een~~lr~k~~llk~E 188 (596)
T KOG4360|consen 164 LQEKLKPLEEENTQLRSKAMLLKTE 188 (596)
T ss_pred HHhhcCChHHHHHHHHHHHHHHHhh
Confidence 3444444444444444444444433
No 224
>PRK10884 SH3 domain-containing protein; Provisional
Probab=71.83 E-value=60 Score=34.79 Aligned_cols=24 Identities=4% Similarity=0.184 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 549 QAAVASAKKELEEVKLNIEKATAE 572 (910)
Q Consensus 549 ~esL~sakkELee~K~~Leka~eE 572 (910)
...|..++.||.+++..|.....+
T Consensus 92 ~~rlp~le~el~~l~~~l~~~~~~ 115 (206)
T PRK10884 92 RTRVPDLENQVKTLTDKLNNIDNT 115 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhH
Confidence 334445555555555555554433
No 225
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=71.17 E-value=1.6e+02 Score=34.27 Aligned_cols=33 Identities=15% Similarity=0.175 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 371 ARAQLEVAKARHVAAVSELKSVKDEVESLRKDY 403 (910)
Q Consensus 371 ~k~eLE~ar~q~a~~laEL~svKeELekLrqEl 403 (910)
-+.+|+.++..|..+-+++..++..+..++..+
T Consensus 156 S~~~ld~a~~~~~~a~a~l~~a~~~l~~~~~~~ 188 (390)
T PRK15136 156 GREELQHARDAVASAQAQLDVAIQQYNANQAMI 188 (390)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356888888888888777777777776665543
No 226
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=70.48 E-value=1.8e+02 Score=32.36 Aligned_cols=28 Identities=25% Similarity=0.469 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 551 AVASAKKELEEVKLNIEKATAEVNCLKV 578 (910)
Q Consensus 551 sL~sakkELee~K~~Leka~eEl~sL~~ 578 (910)
.+..+..+++.+.+.|.++..++..|..
T Consensus 82 ~l~~Lq~ql~~l~akI~k~~~el~~L~T 109 (258)
T PF15397_consen 82 KLSKLQQQLEQLDAKIQKTQEELNFLST 109 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556677777777777777777776665
No 227
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=70.48 E-value=1e+02 Score=33.50 Aligned_cols=59 Identities=15% Similarity=0.168 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHH
Q 002541 569 ATAEVNCLKVAATSLQSELEREKSALAAIRQREGMASVAVASLEAELDRTRSEIALVQM 627 (910)
Q Consensus 569 a~eEl~sL~~~vesLrsELek~K~ELeelKeke~~a~~eI~sL~eELer~ksELe~~ka 627 (910)
....++.+......|..++..++.+++.++.........+.++..++..+..+++.+..
T Consensus 40 sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~ 98 (251)
T PF11932_consen 40 SQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEE 98 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444555555556666666666666555555566666666666666666555543
No 228
>PLN03188 kinesin-12 family protein; Provisional
Probab=70.31 E-value=3.8e+02 Score=36.02 Aligned_cols=62 Identities=21% Similarity=0.164 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002541 611 LEAELDRTRSEIALVQMKEKEAREKTVELPKQLQVAAQEADQAKSLAQAAGEELHKAKEEAEQAKA 676 (910)
Q Consensus 611 L~eELer~ksELe~~kakeeeare~~~eL~~eLqqls~EaEeAKkeae~ae~EL~~lkeEaE~aKa 676 (910)
|.+|-..++..|.+.-+ |-....+|-..|.++..-+--|++.++.++.|..+++.+++.+|.
T Consensus 1178 ~~~enk~l~~qlrdtae----av~aagellvrl~eaeea~~~a~~r~~~~eqe~~~~~k~~~klkr 1239 (1320)
T PLN03188 1178 LRDENKSLQAQLRDTAE----AVQAAGELLVRLKEAEEALTVAQKRAMDAEQEAAEAYKQIDKLKR 1239 (1320)
T ss_pred HHHhhHHHHHHHhhHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444433221 223334566666666666666666677777666666666666654
No 229
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=70.28 E-value=1.7e+02 Score=32.64 Aligned_cols=70 Identities=17% Similarity=0.281 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHH
Q 002541 549 QAAVASAKKELEEVKLNIEKATAEVNCLKVAATSLQSELEREKSALAAIRQREGMASVAVASLEAELDRTRSEIALV 625 (910)
Q Consensus 549 ~esL~sakkELee~K~~Leka~eEl~sL~~~vesLrsELek~K~ELeelKeke~~a~~eI~sL~eELer~ksELe~~ 625 (910)
+.++.....++...+..|+.+..+.+.|. +.|++-|.+|+.++.++..+.+-.-..-+|.+++..+|..+
T Consensus 111 k~aIq~i~~~~q~~~~~Lnnvasdea~L~-------~Kierrk~ElEr~rkRle~LqsiRP~~MdEyE~~EeeLqkl 180 (338)
T KOG3647|consen 111 KSAIQAIQVRLQSSRAQLNNVASDEAALG-------SKIERRKAELERTRKRLEALQSIRPAHMDEYEDCEEELQKL 180 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 44455555666666666666666665555 67777888888888888877777777777777776666443
No 230
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=70.27 E-value=81 Score=34.25 Aligned_cols=64 Identities=20% Similarity=0.237 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHH
Q 002541 562 VKLNIEKATAEVNCLKVAATSLQSELEREKSALAAIRQREGMASVAVASLEAELDRTRSEIALV 625 (910)
Q Consensus 562 ~K~~Leka~eEl~sL~~~vesLrsELek~K~ELeelKeke~~a~~eI~sL~eELer~ksELe~~ 625 (910)
++..+...++.+..++..-+.|..+|+....+++..++++.....+.+.|++.+.++--+...+
T Consensus 133 ~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L 196 (290)
T COG4026 133 LKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDL 196 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHH
Confidence 3334444444444444444555555555555555555555555555555555555554444333
No 231
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=69.40 E-value=1.4e+02 Score=33.52 Aligned_cols=55 Identities=15% Similarity=0.160 Sum_probs=32.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHH
Q 002541 640 PKQLQVAAQEADQAKSLAQAAGEELHKAKEEAEQAKAGASTIESRLTAARKEIEA 694 (910)
Q Consensus 640 ~~eLqqls~EaEeAKkeae~ae~EL~~lkeEaE~aKaeI~taE~rL~aA~KElEA 694 (910)
...|+++..|+.++|.-++.++.-|.+-..-+..-=..|.--..+|+-++.-+|-
T Consensus 116 QLALKEARkEIkQLkQvieTmrssL~ekDkGiQKYFvDINiQN~KLEsLLqsMEl 170 (305)
T PF15290_consen 116 QLALKEARKEIKQLKQVIETMRSSLAEKDKGIQKYFVDINIQNKKLESLLQSMEL 170 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHhhhhhhHhHHHHHHHHHHH
Confidence 3456666666666666666666666655444444444555555666666555544
No 232
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=69.28 E-value=77 Score=35.36 Aligned_cols=51 Identities=16% Similarity=0.361 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 549 QAAVASAKKELEEVKLNIEKATAEVNCLKVAATSLQSELEREKSALAAIRQ 599 (910)
Q Consensus 549 ~esL~sakkELee~K~~Leka~eEl~sL~~~vesLrsELek~K~ELeelKe 599 (910)
+..+..+..++...+..|..+..+...|..+++.-+.||+..+.-|..++.
T Consensus 168 ~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~ 218 (267)
T PF10234_consen 168 KEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQS 218 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444444444444444444444444444444444444444444444443
No 233
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=68.93 E-value=2.6e+02 Score=33.47 Aligned_cols=40 Identities=18% Similarity=0.294 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 554 SAKKELEEVKLNIEKATAEVNCLKVAATSLQSELEREKSA 593 (910)
Q Consensus 554 sakkELee~K~~Leka~eEl~sL~~~vesLrsELek~K~E 593 (910)
..++|+++....+.-..+++..++..+-.||++|......
T Consensus 306 as~~E~ee~rve~~~s~ed~~~~q~q~~~Lrs~~~d~EAq 345 (554)
T KOG4677|consen 306 ASRKEFEETRVELPFSAEDSAHIQDQYTLLRSQIIDIEAQ 345 (554)
T ss_pred hHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566677666666666666666666666666666644443
No 234
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=68.76 E-value=1.6e+02 Score=32.22 Aligned_cols=68 Identities=18% Similarity=0.173 Sum_probs=31.4
Q ss_pred HHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 594 LAAIRQREGMASVAVASLEAELDRTRSEIALVQMKEKEAREKTVELPKQLQVAAQEADQAKSLAQAAGEELHKAKEEAEQ 673 (910)
Q Consensus 594 LeelKeke~~a~~eI~sL~eELer~ksELe~~kakeeeare~~~eL~~eLqqls~EaEeAKkeae~ae~EL~~lkeEaE~ 673 (910)
|.+++...+.+..+..++.++|+.+..++..+ ...+.++.++....+..+.-+..++..++.++..
T Consensus 34 L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~l--------------E~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~ 99 (230)
T PF10146_consen 34 LEEYRKEMEELLQERMAHVEELRQINQDINTL--------------ENIIKQAESERNKRQEKIQRLYEEYKPLKDEINE 99 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444555555555555554333 3344455555554444444444444444444444
Q ss_pred HH
Q 002541 674 AK 675 (910)
Q Consensus 674 aK 675 (910)
.+
T Consensus 100 ~R 101 (230)
T PF10146_consen 100 LR 101 (230)
T ss_pred HH
Confidence 43
No 235
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=68.69 E-value=73 Score=36.15 Aligned_cols=17 Identities=29% Similarity=0.626 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHhhhhh
Q 002541 806 QELRKWRAEHEQRRKAG 822 (910)
Q Consensus 806 ~ELRkwR~e~eq~rka~ 822 (910)
.++++++.+-++++...
T Consensus 233 ~qv~klk~qLee~~~~~ 249 (302)
T PF09738_consen 233 EQVRKLKLQLEERQSEG 249 (302)
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 57788887777665533
No 236
>PRK10869 recombination and repair protein; Provisional
Probab=67.62 E-value=3e+02 Score=33.74 Aligned_cols=34 Identities=12% Similarity=0.246 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Q 002541 328 VEELKLNLERAQTEEHQAKQDSELAKLRVEEMEQ 361 (910)
Q Consensus 328 ieeL~~kLE~a~~e~~~A~e~sE~ak~r~~ELEq 361 (910)
...+..+|++++.......+..+..++++.|++.
T Consensus 166 ~~~~~~~l~~l~~~~~~~~~~~d~l~fql~Ei~~ 199 (553)
T PRK10869 166 WHQSCRDLAQHQQQSQERAARKQLLQYQLKELNE 199 (553)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh
Confidence 3334444555555555566667888899999986
No 237
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=67.50 E-value=1.5e+02 Score=37.76 Aligned_cols=20 Identities=35% Similarity=0.278 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 002541 646 AAQEADQAKSLAQAAGEELH 665 (910)
Q Consensus 646 ls~EaEeAKkeae~ae~EL~ 665 (910)
+..-+++++.++..+-.++.
T Consensus 575 a~~~l~~a~~~~~~~i~~lk 594 (782)
T PRK00409 575 AQQAIKEAKKEADEIIKELR 594 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444333
No 238
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=67.10 E-value=1.9e+02 Score=33.60 Aligned_cols=82 Identities=26% Similarity=0.299 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHH
Q 002541 303 YRKRSEAAEVAKNQVLKELDQTKRLVEELKLNLERAQTE-EHQAKQDSELAKLRVEEMEQGIADDASVAARAQLEVAKAR 381 (910)
Q Consensus 303 ~Keqle~aE~~k~qal~ELe~aKr~ieeL~~kLE~a~~e-~~~A~e~sE~ak~r~~ELEqgia~~~~~a~k~eLE~ar~q 381 (910)
|+-.++.|++..+.+...+......+..+...++.++.. ..+|..+. .|+.+|-+. ....+++++.++..
T Consensus 89 y~~al~qAea~la~a~~~~~~~~a~~~~~~A~i~~a~a~~l~~a~~~~----~R~~~L~~~-----g~vs~~~~~~a~~a 159 (352)
T COG1566 89 YRAALEQAEAALAAAEAQLRNLRAQLASAQALIAQAEAQDLDQAQNEL----ERRAELAQR-----GVVSREELDRARAA 159 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhc-----CcccHHHHHHHHHH
Confidence 444444444444444444444444444444444444442 33333333 455555432 12346677777776
Q ss_pred HHHHHHHHHHHH
Q 002541 382 HVAAVSELKSVK 393 (910)
Q Consensus 382 ~a~~laEL~svK 393 (910)
+..+-+.+..+.
T Consensus 160 ~~~A~A~~~~a~ 171 (352)
T COG1566 160 LQAAEAALAAAQ 171 (352)
T ss_pred HHHHHHHHHHhH
Confidence 666666665555
No 239
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=66.06 E-value=1.1e+02 Score=28.69 Aligned_cols=65 Identities=15% Similarity=0.145 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHH
Q 002541 558 ELEEVKLNIEKATAEVNCLKVAATSLQSELEREKSALAAIRQREGMASVAVASLEAELDRTRSEI 622 (910)
Q Consensus 558 ELee~K~~Leka~eEl~sL~~~vesLrsELek~K~ELeelKeke~~a~~eI~sL~eELer~ksEL 622 (910)
||..+...-......+......+..+...+.+...++....+++-.+....+.|..++..+..-+
T Consensus 4 EL~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~ 68 (96)
T PF08647_consen 4 ELVSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQL 68 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 33333333333344444444444455566666666677777777777777777777777776654
No 240
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=65.82 E-value=2.2e+02 Score=31.66 Aligned_cols=27 Identities=15% Similarity=0.143 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 371 ARAQLEVAKARHVAAVSELKSVKDEVE 397 (910)
Q Consensus 371 ~k~eLE~ar~q~a~~laEL~svKeELe 397 (910)
-+.+++.++..|..+-.+|..++..+.
T Consensus 133 S~~~~d~~~~~~~~a~~~l~~~~~~~~ 159 (327)
T TIGR02971 133 SASDLDSKALKLRTAEEELEEALASRS 159 (327)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777777666666666655444
No 241
>PRK10869 recombination and repair protein; Provisional
Probab=65.70 E-value=3.2e+02 Score=33.45 Aligned_cols=31 Identities=10% Similarity=0.012 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 380 ARHVAAVSELKSVKDEVESLRKDYASLVTEK 410 (910)
Q Consensus 380 ~q~a~~laEL~svKeELekLrqEl~~l~eeK 410 (910)
..|..+..++..++.+|+.++..........
T Consensus 157 ~~~~~~y~~~~~~~~~l~~l~~~~~~~~~~~ 187 (553)
T PRK10869 157 QEMRAAYQLWHQSCRDLAQHQQQSQERAARK 187 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3566677777777777777755544433333
No 242
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=64.60 E-value=2.2e+02 Score=31.05 Aligned_cols=57 Identities=23% Similarity=0.231 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 644 QVAAQEADQAKSLAQAAGEELHKAKEEAEQAKAGASTIESRLTAARKEIEAARASEK 700 (910)
Q Consensus 644 qqls~EaEeAKkeae~ae~EL~~lkeEaE~aKaeI~taE~rL~aA~KElEAAKAsEa 700 (910)
+.+...+...+.........+..++..+..+...|...+.+...+....-.++|++.
T Consensus 95 ~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~~~akA~~~ 151 (225)
T COG1842 95 QSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALKARKAAAKAQEK 151 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444445555555555555555555555555555555555555554
No 243
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=64.34 E-value=2.5e+02 Score=31.61 Aligned_cols=59 Identities=15% Similarity=0.209 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHH
Q 002541 556 KKELEEVKLNIEKATAEVNCLKVAATSLQSELEREKSALAAIRQREGMASVAVASLEAE 614 (910)
Q Consensus 556 kkELee~K~~Leka~eEl~sL~~~vesLrsELek~K~ELeelKeke~~a~~eI~sL~eE 614 (910)
...+.++..+|++.+.|-..-+-.+++|..-|.+.|.-.+.-+.....+.++-.+|.+.
T Consensus 17 LqKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~ 75 (307)
T PF10481_consen 17 LQKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMES 75 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHH
Confidence 33455555666666666665565566666666666555555555444444444444333
No 244
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=64.24 E-value=2.1e+02 Score=30.68 Aligned_cols=44 Identities=14% Similarity=0.151 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHH
Q 002541 575 CLKVAATSLQSELEREKSALAAIRQREGMASVAVASLEAELDRT 618 (910)
Q Consensus 575 sL~~~vesLrsELek~K~ELeelKeke~~a~~eI~sL~eELer~ 618 (910)
.|+-.+..++..|..++..+..+..........+..+...+...
T Consensus 28 ~l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~ 71 (219)
T TIGR02977 28 MIRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADW 71 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555566666665555555444444444444444443
No 245
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=64.11 E-value=2.5e+02 Score=31.69 Aligned_cols=18 Identities=28% Similarity=0.302 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 002541 551 AVASAKKELEEVKLNIEK 568 (910)
Q Consensus 551 sL~sakkELee~K~~Lek 568 (910)
.+..++.+|..++.++..
T Consensus 87 ~l~~a~a~l~~a~a~l~~ 104 (346)
T PRK10476 87 TVAQAQADLALADAQIMT 104 (346)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444333
No 246
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=63.99 E-value=1.2e+02 Score=34.39 Aligned_cols=62 Identities=18% Similarity=0.183 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 002541 571 AEVNCLKVAATSLQSELEREKSALAAIRQREGMASVAVASLEAELDRTRSEIALVQMKEKEA 632 (910)
Q Consensus 571 eEl~sL~~~vesLrsELek~K~ELeelKeke~~a~~eI~sL~eELer~ksELe~~kakeeea 632 (910)
+|-..+.=.|+.|++.|+.....+.+++............+......++.++..++......
T Consensus 105 Nek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~~r 166 (302)
T PF09738_consen 105 NEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLKQR 166 (302)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555778888888888888888887777777777777777777777777777665443
No 247
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=63.85 E-value=1.9e+02 Score=30.56 Aligned_cols=20 Identities=25% Similarity=0.363 Sum_probs=11.5
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 002541 640 PKQLQVAAQEADQAKSLAQA 659 (910)
Q Consensus 640 ~~eLqqls~EaEeAKkeae~ 659 (910)
+..++++..++..++..+.-
T Consensus 134 p~~i~~~~~~~~~~~~~anr 153 (188)
T PF03962_consen 134 PEKIEKLKEEIKIAKEAANR 153 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45566666666665555443
No 248
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=63.67 E-value=3.4e+02 Score=32.97 Aligned_cols=8 Identities=13% Similarity=-0.176 Sum_probs=4.2
Q ss_pred CCCCCCCC
Q 002541 226 SPKQFGSP 233 (910)
Q Consensus 226 ~~~~~~~~ 233 (910)
.|+..+..
T Consensus 158 IPL~~~~~ 165 (489)
T PF05262_consen 158 IPLSDNIL 165 (489)
T ss_pred Eecccccc
Confidence 56654444
No 249
>PRK11519 tyrosine kinase; Provisional
Probab=63.60 E-value=3.9e+02 Score=33.70 Aligned_cols=10 Identities=20% Similarity=0.381 Sum_probs=6.4
Q ss_pred HHHHHHHHHH
Q 002541 805 EQELRKWRAE 814 (910)
Q Consensus 805 E~ELRkwR~e 814 (910)
-..+|.+|..
T Consensus 507 ~Ea~r~lrt~ 516 (719)
T PRK11519 507 IEAIRSLRTS 516 (719)
T ss_pred HHHHHHHHHH
Confidence 3467777765
No 250
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=63.44 E-value=4.9e+02 Score=34.79 Aligned_cols=77 Identities=22% Similarity=0.185 Sum_probs=35.9
Q ss_pred HHhHHHHHHHHHHHhhHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002541 284 ERRKYVEQELERSHEEMPEYRKRSE----------------AAEVAKNQVLKELDQTKRLVEELKLNLERAQTEEHQAKQ 347 (910)
Q Consensus 284 ER~~~~e~EL~~~qeeL~k~Keqle----------------~aE~~k~qal~ELe~aKr~ieeL~~kLE~a~~e~~~A~e 347 (910)
.|....+..++.+.+++.+.++++. .-+....++..+|...++.+.....++..+.......=+
T Consensus 65 ~~~~~~~~~i~~ap~~~~~~~~~l~~~~~~~~~~~~~~s~~~Leq~l~~~~~~L~~~q~~l~~~~~~~~~~~~~l~~~pq 144 (1109)
T PRK10929 65 ERAKQYQQVIDNFPKLSAELRQQLNNERDEPRSVPPNMSTDALEQEILQVSSQLLEKSRQAQQEQDRAREISDSLSQLPQ 144 (1109)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhchh
Confidence 3444455555555555555555543 223444455555555555555555555333333222222
Q ss_pred hHHHHHHHHHHHH
Q 002541 348 DSELAKLRVEEME 360 (910)
Q Consensus 348 ~sE~ak~r~~ELE 360 (910)
....++.|..++.
T Consensus 145 ~~~~~~~~l~~i~ 157 (1109)
T PRK10929 145 QQTEARRQLNEIE 157 (1109)
T ss_pred hHHHHHHHHHHHH
Confidence 2233445555554
No 251
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=63.44 E-value=1.7e+02 Score=29.29 Aligned_cols=71 Identities=18% Similarity=0.294 Sum_probs=37.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHH
Q 002541 545 HTDIQAAVASAKKELEEVKLNIEKATAEVNCLKVAATSLQSELEREKSALAAIRQREGMASVAVASLEAELDRT 618 (910)
Q Consensus 545 ~~~l~esL~sakkELee~K~~Leka~eEl~sL~~~vesLrsELek~K~ELeelKeke~~a~~eI~sL~eELer~ 618 (910)
-..+..+++++.+.|+.+-..|..++.++. ..++.|-..|+...+-...++.+.......+..+..++..+
T Consensus 38 rr~m~~A~~~v~kql~~vs~~l~~tKkhLs---qRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v 108 (126)
T PF07889_consen 38 RRSMSDAVASVSKQLEQVSESLSSTKKHLS---QRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSV 108 (126)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 355566677777777777777776666553 33444444444444444444444444333333333333333
No 252
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=62.98 E-value=1.1e+02 Score=27.25 Aligned_cols=59 Identities=19% Similarity=0.191 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 382 HVAAVSELKSVKDEVESLRKDYASLVTEKDIAVKKAEEAISASKEVEKTVEELTIELIA 440 (910)
Q Consensus 382 ~a~~laEL~svKeELekLrqEl~~l~eeK~~A~k~AeEA~~aak~~eekveeLt~EL~~ 440 (910)
.+.+-.-|+++...+.....++..+..+++.+..++..+-.....+..+++.|..++..
T Consensus 7 ~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~ 65 (69)
T PF14197_consen 7 IATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEE 65 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444566777788888888888999999999998888887777777777777666543
No 253
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=62.84 E-value=2.6e+02 Score=31.35 Aligned_cols=18 Identities=22% Similarity=0.272 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 002541 586 ELEREKSALAAIRQREGM 603 (910)
Q Consensus 586 ELek~K~ELeelKeke~~ 603 (910)
.|+.++-.+..|+.++..
T Consensus 160 DLesa~vkV~WLR~~L~E 177 (269)
T PF05278_consen 160 DLESAKVKVDWLRSKLEE 177 (269)
T ss_pred HHHHcCcchHHHHHHHHH
Confidence 444455555555555444
No 254
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=62.29 E-value=3.5e+02 Score=32.64 Aligned_cols=103 Identities=15% Similarity=0.196 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhc---chHHHHHHHH
Q 002541 572 EVNCLKVAATSLQSELEREKSALAAIRQREGMASVAVASLEAELDRTRSEIALVQMKEKEAREKTVE---LPKQLQVAAQ 648 (910)
Q Consensus 572 El~sL~~~vesLrsELek~K~ELeelKeke~~a~~eI~sL~eELer~ksELe~~kakeeeare~~~e---L~~eLqqls~ 648 (910)
-+..++.....|++.+.+.......++.+-..---.+..|..++.....+|+.+++.+...+..+.. -..+.+...+
T Consensus 296 ~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~Is~e~fe~mn~ 375 (622)
T COG5185 296 KIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQSNIDELHKQLRKQGISTEQFELMNQ 375 (622)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCHHHHHHHHH
Confidence 3444455555555555555555555555555555555666666666666666665555443333221 1223334444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 649 EADQAKSLAQAAGEELHKAKEEAEQA 674 (910)
Q Consensus 649 EaEeAKkeae~ae~EL~~lkeEaE~a 674 (910)
|-+++-+++..+.-+..++..+....
T Consensus 376 Ere~L~reL~~i~~~~~~L~k~V~~~ 401 (622)
T COG5185 376 EREKLTRELDKINIQSDKLTKSVKSR 401 (622)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHhH
Confidence 44444444444444444444333333
No 255
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=62.08 E-value=22 Score=40.60 Aligned_cols=84 Identities=24% Similarity=0.264 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 369 VAARAQLEVAKARHVAAVSELKSVKDEVESLRKDYASLVTEKDIAVKKAEEAISASKEVEKTVEELTIELIATKESLESA 448 (910)
Q Consensus 369 ~a~k~eLE~ar~q~a~~laEL~svKeELekLrqEl~~l~eeK~~A~k~AeEA~~aak~~eekveeLt~EL~~lKEsLe~a 448 (910)
..+..+|+.++.++...-.+|..+...|..|+.+|.....++......+......+.....-+..|..|..+|.+.+...
T Consensus 224 ~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E~~RW~~~~~~l 303 (344)
T PF12777_consen 224 EEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGEKERWSEQIEEL 303 (344)
T ss_dssp HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcchhhhHHHHHHHH
Q ss_pred HHHH
Q 002541 449 HAAH 452 (910)
Q Consensus 449 ~aa~ 452 (910)
....
T Consensus 304 ~~~~ 307 (344)
T PF12777_consen 304 EEQL 307 (344)
T ss_dssp HHHH
T ss_pred HHHh
No 256
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=62.01 E-value=1.6e+02 Score=32.99 Aligned_cols=29 Identities=31% Similarity=0.399 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 372 RAQLEVAKARHVAAVSELKSVKDEVESLR 400 (910)
Q Consensus 372 k~eLE~ar~q~a~~laEL~svKeELekLr 400 (910)
+.+++.++..|..+...+..++..+..++
T Consensus 144 ~~~~~~~~~~~~~a~~~~~~a~~~~~~~~ 172 (331)
T PRK03598 144 ANDLENARSSRDQAQATLKSAQDKLSQYR 172 (331)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666666666666554
No 257
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=61.62 E-value=4.4e+02 Score=33.59 Aligned_cols=13 Identities=31% Similarity=0.217 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHH
Q 002541 575 CLKVAATSLQSEL 587 (910)
Q Consensus 575 sL~~~vesLrsEL 587 (910)
.|+..++.|+.|+
T Consensus 670 ~LK~k~E~Lk~Ev 682 (762)
T PLN03229 670 DLKSKIELLKLEV 682 (762)
T ss_pred hHHHHHHHHHHHH
Confidence 3444444444444
No 258
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=61.52 E-value=2e+02 Score=36.75 Aligned_cols=18 Identities=17% Similarity=0.104 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 002541 647 AQEADQAKSLAQAAGEEL 664 (910)
Q Consensus 647 s~EaEeAKkeae~ae~EL 664 (910)
..-+.+++.++..+-.++
T Consensus 571 ~~~~~~a~~~~~~~i~~l 588 (771)
T TIGR01069 571 QEALKALKKEVESIIREL 588 (771)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444443333333
No 259
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=61.48 E-value=2.1e+02 Score=29.82 Aligned_cols=73 Identities=16% Similarity=0.121 Sum_probs=34.7
Q ss_pred cccc-CCCcccHHHHHHhcC-----CcccccccccchHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 252 LIDT-TAPFESVKEVVSKFG-----GIVDWKAHRMQTVERRKYVEQELERSHEEMPEYRKRSEAAEVAKNQVLKELDQTK 325 (910)
Q Consensus 252 eIDT-~aPf~SVK~AvslFG-----e~~~~K~~r~~~~ER~~~~e~EL~~~qeeL~k~Keqle~aE~~k~qal~ELe~aK 325 (910)
.||+ .-|.+-|=-.|+.|. .+..|++.....-+|...+...| ..+.+-...++..+.+....|..++
T Consensus 24 ~ld~~t~~~q~~~~lI~F~iL~~ll~k~l~~PI~~~l~~R~~~I~~~l-------~~Ae~~~~eA~~~~~eye~~L~~Ar 96 (181)
T PRK13454 24 QLDFSTFPNQIFWLLVTLVAIYFVLTRVALPRIGAVLAERQGTITNDL-------AAAEELKQKAVEAEKAYNKALADAR 96 (181)
T ss_pred CCcHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566 457666666666333 33345533223334554444433 3344444444444444555555555
Q ss_pred HHHHHH
Q 002541 326 RLVEEL 331 (910)
Q Consensus 326 r~ieeL 331 (910)
.....+
T Consensus 97 ~EA~~i 102 (181)
T PRK13454 97 AEAQRI 102 (181)
T ss_pred HHHHHH
Confidence 443333
No 260
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=61.31 E-value=66 Score=34.78 Aligned_cols=49 Identities=27% Similarity=0.380 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 553 ASAKKELEEVKLNIEKATAEVNCLKVAATSLQSELEREKSALAAIRQRE 601 (910)
Q Consensus 553 ~sakkELee~K~~Leka~eEl~sL~~~vesLrsELek~K~ELeelKeke 601 (910)
..++.|++.....|+.+..+...+.+.++.+..|.+.+.++...++++.
T Consensus 161 ~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i 209 (216)
T KOG1962|consen 161 EKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQI 209 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555555555555555555555443
No 261
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=60.25 E-value=4.5e+02 Score=33.22 Aligned_cols=20 Identities=35% Similarity=0.375 Sum_probs=16.0
Q ss_pred cccccchhhHHHhhhhccCc
Q 002541 885 KKKSLFPRLFMFLARRRSHA 904 (910)
Q Consensus 885 kkk~~~P~~~~f~~rkk~~~ 904 (910)
|..+.++.++.=++.|+.|.
T Consensus 571 kSLS~LgdVi~AL~~k~~Hi 590 (670)
T KOG0239|consen 571 KSLSALGDVISALASKRSHI 590 (670)
T ss_pred hhhhhhHHHHHHHhhcCCCC
Confidence 67778888888888888776
No 262
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=59.87 E-value=4.7e+02 Score=33.32 Aligned_cols=13 Identities=15% Similarity=0.253 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHH
Q 002541 497 LRSKLDTASALLL 509 (910)
Q Consensus 497 LeakLeea~~~Le 509 (910)
|++.++.+..++.
T Consensus 651 l~~si~~lk~k~~ 663 (717)
T PF10168_consen 651 LKASIEQLKKKLD 663 (717)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444333
No 263
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=59.69 E-value=2.7e+02 Score=31.25 Aligned_cols=19 Identities=5% Similarity=0.120 Sum_probs=8.6
Q ss_pred HHHHHHHhhHHHHHHHHHH
Q 002541 291 QELERSHEEMPEYRKRSEA 309 (910)
Q Consensus 291 ~EL~~~qeeL~k~Keqle~ 309 (910)
.+|..++..+...+.++..
T Consensus 81 ~~l~~~~a~l~~~~~~l~~ 99 (331)
T PRK03598 81 NALMQAKANVSVAQAQLDL 99 (331)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444443
No 264
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=59.60 E-value=56 Score=39.65 Aligned_cols=65 Identities=17% Similarity=0.265 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhH
Q 002541 547 DIQAAVASAKKELEEVKLNIEKATAEVNCLKVAATSLQSELEREKSALAAIRQREGMASVAVASL 611 (910)
Q Consensus 547 ~l~esL~sakkELee~K~~Leka~eEl~sL~~~vesLrsELek~K~ELeelKeke~~a~~eI~sL 611 (910)
+...-++++..||-+++..-++...+|..+...++.|+..|.+.+.+|.+++.....++.....|
T Consensus 83 e~~RI~~sVs~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El 147 (907)
T KOG2264|consen 83 EQKRILASVSLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEEL 147 (907)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHH
Confidence 33444667888888888888899999999999999999999999999888887777666554433
No 265
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=59.45 E-value=1.1e+02 Score=37.32 Aligned_cols=55 Identities=29% Similarity=0.308 Sum_probs=35.5
Q ss_pred hhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Q 002541 602 GMASVAVASLEAELDRTRSEIALVQMKEKEAREKTVELPKQLQVAAQEADQAKSL 656 (910)
Q Consensus 602 ~~a~~eI~sL~eELer~ksELe~~kakeeeare~~~eL~~eLqqls~EaEeAKke 656 (910)
+++..+|+.|.-|...++-|+++++....+..+.+.+|..+|+.++.++.+++.+
T Consensus 325 NDLIakVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k~ea~~ar~~ 379 (832)
T KOG2077|consen 325 NDLIAKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAKAEAEDARQK 379 (832)
T ss_pred HHHHHHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455667777777777777777776665555666666666666666666666554
No 266
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=59.35 E-value=80 Score=27.66 Aligned_cols=31 Identities=32% Similarity=0.292 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHhHHHHHH
Q 002541 586 ELEREKSALAAIRQREGMASVAVASLEAELD 616 (910)
Q Consensus 586 ELek~K~ELeelKeke~~a~~eI~sL~eELe 616 (910)
||.++|...-.+..++.++......|..++.
T Consensus 19 EL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~ 49 (61)
T PF08826_consen 19 ELTKVKSANLAFESKLQEAEKRNRELEQEIE 49 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333
No 267
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=59.32 E-value=2.6e+02 Score=30.23 Aligned_cols=58 Identities=17% Similarity=0.224 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 648 QEADQAKSLAQAAGEELHKAKEEAEQAK-----AGASTIESRLTAARKEIEAARASEKLALAA 705 (910)
Q Consensus 648 ~EaEeAKkeae~ae~EL~~lkeEaE~aK-----aeI~taE~rL~aA~KElEAAKAsEa~Ala~ 705 (910)
..++.+|+.......++..+...+...+ .+++.++.++..+...+..++..=..++..
T Consensus 120 ~~l~KaKk~Y~~~C~e~e~a~~~~~~~~~~~~~ke~eK~~~K~~k~~~~~~~a~~~Y~~~v~~ 182 (239)
T cd07647 120 KKTMKAKKSYEQKCREKDKAEQAYEKSSSGAQPKEAEKLKKKAAQCKTSAEEADSAYKSSIGC 182 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444433333332222 234444455544444444444333333333
No 268
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=59.24 E-value=44 Score=34.11 Aligned_cols=35 Identities=29% Similarity=0.306 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 560 EEVKLNIEKATAEVNCLKVAATSLQSELEREKSAL 594 (910)
Q Consensus 560 ee~K~~Leka~eEl~sL~~~vesLrsELek~K~EL 594 (910)
..+...+.....++..+...+..|+.+|..+...+
T Consensus 75 ~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~ 109 (169)
T PF07106_consen 75 AELDAEIKELREELAELKKEVKSLEAELASLSSEP 109 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 33333344444444444444444444444444443
No 269
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=59.14 E-value=3.3e+02 Score=31.32 Aligned_cols=37 Identities=19% Similarity=0.296 Sum_probs=19.3
Q ss_pred HHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 002541 595 AAIRQREGMASVAVASLEAELDRTRSEIALVQMKEKE 631 (910)
Q Consensus 595 eelKeke~~a~~eI~sL~eELer~ksELe~~kakeee 631 (910)
..++++-.....++..|...+..++.++..+++....
T Consensus 75 ~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~ 111 (319)
T PF09789_consen 75 SESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLAR 111 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHh
Confidence 4445555555555555555555555555555554433
No 270
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=58.99 E-value=3.2e+02 Score=31.21 Aligned_cols=59 Identities=22% Similarity=0.170 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 002541 382 HVAAVSELKSVKDEVESLRKDYASLVTEKDIAVKKAE-EAISASKEVEKTVEELTIELIA 440 (910)
Q Consensus 382 ~a~~laEL~svKeELekLrqEl~~l~eeK~~A~k~Ae-EA~~aak~~eekveeLt~EL~~ 440 (910)
+..+=.+|..-+.....|..++..+..+-.....+|+ +=+..++.+.+++..|+.+-..
T Consensus 36 n~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~~aEqEEE~isN~LlKkl~~l~keKe~ 95 (310)
T PF09755_consen 36 NRVLKRELETEKARCKHLQEENRALREASVRIQAKAEQEEEFISNTLLKKLQQLKKEKET 95 (310)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333444444444333333333333 3345566666666666655443
No 271
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=58.37 E-value=3.8e+02 Score=31.82 Aligned_cols=60 Identities=15% Similarity=0.145 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHH
Q 002541 563 KLNIEKATAEVNCLKVAATSLQSELEREKSALAAIRQREGMASVAVASLEAELDRTRSEI 622 (910)
Q Consensus 563 K~~Leka~eEl~sL~~~vesLrsELek~K~ELeelKeke~~a~~eI~sL~eELer~ksEL 622 (910)
+..+..+..++......+..+..++..++.+-..++.++...+..+..|.+|...+..+.
T Consensus 12 dqr~~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~ 71 (459)
T KOG0288|consen 12 DQRLIDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEER 71 (459)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666677777778888888888888777777777777777777776654
No 272
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=58.27 E-value=2e+02 Score=28.69 Aligned_cols=49 Identities=24% Similarity=0.360 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHH
Q 002541 567 EKATAEVNCLKVAATSLQSELEREKSALAAIRQREGMASVAVASLEAEL 615 (910)
Q Consensus 567 eka~eEl~sL~~~vesLrsELek~K~ELeelKeke~~a~~eI~sL~eEL 615 (910)
.....++..+...+..|+.+++....++..+..++..+...+..+...+
T Consensus 62 ~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~ 110 (151)
T PF11559_consen 62 RRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKL 110 (151)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444444433333333333333333333
No 273
>cd07672 F-BAR_PSTPIP2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 2. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 2 (PSTPIP2), also known as Macrophage Actin-associated tYrosine Phosphorylated protein (MAYP), is mostly expressed in hematopoietic cells but is also expressed in the brain. It is involved in regulating cell adhesion and motility. Mutations in the gene encoding murine PSTPIP2 can cause autoinflammatory disorders such as chronic multifocal osteomyelitis and macrophage autoinflammatory disease. PSTPIP2 contains an N-terminal F-BAR domain and lacks the PEST motifs and SH3 domain that are found in PSTPIP1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They ca
Probab=57.94 E-value=2.9e+02 Score=30.26 Aligned_cols=15 Identities=7% Similarity=0.352 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHH
Q 002541 547 DIQAAVASAKKELEE 561 (910)
Q Consensus 547 ~l~esL~sakkELee 561 (910)
.+..++..++.|++.
T Consensus 58 Tl~~sw~~~~~E~e~ 72 (240)
T cd07672 58 TLKRSLDVFKQQIDN 72 (240)
T ss_pred hHHHHHHHHHHHHHH
Confidence 334444445544443
No 274
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=57.87 E-value=90 Score=33.81 Aligned_cols=61 Identities=18% Similarity=0.210 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 385 AVSELKSVKDEVESLRKDYASLVTEKDIAVKKAEEAISASKEVEKTVEELTIELIATKESL 445 (910)
Q Consensus 385 ~laEL~svKeELekLrqEl~~l~eeK~~A~k~AeEA~~aak~~eekveeLt~EL~~lKEsL 445 (910)
.-.+.+..+.++.+|+.++......-..+.++...+.+.++.+...-+.|..+...+++.+
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i 209 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQI 209 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 3445555666666666666555555555555555555555444444444444444444433
No 275
>cd07673 F-BAR_FCHO2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 2 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. The specific function of FCH domain Only 2 (FCHO2) is still unknown. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO1 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=57.24 E-value=3.1e+02 Score=30.44 Aligned_cols=45 Identities=7% Similarity=0.003 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHH
Q 002541 572 EVNCLKVAATSLQSELEREKSALAAIRQREGMASVAVASLEAELD 616 (910)
Q Consensus 572 El~sL~~~vesLrsELek~K~ELeelKeke~~a~~eI~sL~eELe 616 (910)
+.+++......++.+++..=..+..+...+......+..+..+..
T Consensus 61 ~~Gt~~~~~~~~~~e~e~~a~~H~~la~~L~~~~~~l~~~~~~~~ 105 (269)
T cd07673 61 QLGTFAPVWDVFKTSTEKLANCHLELVRKLQELIKEVQKYGEEQV 105 (269)
T ss_pred CcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555555443344444444443
No 276
>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein. The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].
Probab=55.17 E-value=1.1e+02 Score=27.60 Aligned_cols=56 Identities=13% Similarity=0.217 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 375 LEVAKARHVAAVSELKSVKDEVESLRKDYASLVTEKDIAVKKAEEAISASKEVEKT 430 (910)
Q Consensus 375 LE~ar~q~a~~laEL~svKeELekLrqEl~~l~eeK~~A~k~AeEA~~aak~~eek 430 (910)
|...+.++-.+|-|.-..++.|..+++||..++=+.|+|..=+.-+.+...+.-+.
T Consensus 10 L~~lQnEWDa~mLE~f~LRk~l~~~rqELs~aLYq~DAA~RViArl~kErd~ar~~ 65 (70)
T PF08606_consen 10 LSTLQNEWDALMLENFTLRKQLDQTRQELSHALYQHDAACRVIARLLKERDEAREA 65 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHH
Confidence 55566678888999999999999999999999888888877555444444443333
No 277
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=55.08 E-value=5.4e+02 Score=32.56 Aligned_cols=11 Identities=18% Similarity=0.302 Sum_probs=6.5
Q ss_pred HHHHHHHHHHH
Q 002541 804 IEQELRKWRAE 814 (910)
Q Consensus 804 vE~ELRkwR~e 814 (910)
+-..+|.+|..
T Consensus 511 ~~Ea~r~lrt~ 521 (726)
T PRK09841 511 AVEAVRALRTS 521 (726)
T ss_pred HHHHHHHHHHH
Confidence 34557777764
No 278
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=54.81 E-value=2.1e+02 Score=27.82 Aligned_cols=60 Identities=28% Similarity=0.311 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002541 577 KVAATSLQSELEREKSALAAIRQREGMASVAVASLEAELDRTRSEIALVQMKEKEAREKT 636 (910)
Q Consensus 577 ~~~vesLrsELek~K~ELeelKeke~~a~~eI~sL~eELer~ksELe~~kakeeeare~~ 636 (910)
+..+.+|...|+..|.....+..+.......+..|..+.......+..++++..+++..+
T Consensus 15 ~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~l 74 (107)
T PF09304_consen 15 QNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNL 74 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555555555555444444455555555555555555555555544444433
No 279
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=53.68 E-value=1.4e+02 Score=26.89 Aligned_cols=30 Identities=27% Similarity=0.221 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHhcHHHHHHHHHHHH
Q 002541 660 AGEELHKAKEEAEQAKAGASTIESRLTAAR 689 (910)
Q Consensus 660 ae~EL~~lkeEaE~aKaeI~taE~rL~aA~ 689 (910)
++.....+..++++++.+-..-..||++++
T Consensus 44 ~q~~reaL~~eneqlk~e~~~WQerlrsLL 73 (79)
T COG3074 44 AQHQREALERENEQLKEEQNGWQERLRALL 73 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344445556666655555566666554
No 280
>PF11172 DUF2959: Protein of unknown function (DUF2959); InterPro: IPR021342 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=53.67 E-value=3.2e+02 Score=29.45 Aligned_cols=128 Identities=16% Similarity=0.233 Sum_probs=76.1
Q ss_pred HhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhh
Q 002541 285 RRKYVEQELERSHEEMPEYRKRSEAAEVAKNQVLKELDQTKRLVEELKLNLERAQTEEHQAKQDSELAKLRVEEMEQGIA 364 (910)
Q Consensus 285 R~~~~e~EL~~~qeeL~k~Keqle~aE~~k~qal~ELe~aKr~ieeL~~kLE~a~~e~~~A~e~sE~ak~r~~ELEqgia 364 (910)
+|..+...++.++.-..+.++|...|-.....+.. . ---+|....++++.+-+......+.+..|+..+| .++
T Consensus 22 KRdilvdrVe~Ardsq~eaqeQF~sALe~f~sl~~-~-----~ggdLe~~Y~~ln~~ye~s~~~A~~V~~RI~~vE-~Va 94 (201)
T PF11172_consen 22 KRDILVDRVEDARDSQQEAQEQFKSALEQFKSLVN-F-----DGGDLEDKYNALNDEYESSEDAAEEVSDRIDAVE-DVA 94 (201)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-C-----CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 34455555666666677777766655444332221 0 0124556666666666666666677778888775 344
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 365 DDASVAARAQLEVAKARHVAAVSELK-SVKDEVESLRKDYASLVTEKDIAVKKAEEAISASK 425 (910)
Q Consensus 365 ~~~~~a~k~eLE~ar~q~a~~laEL~-svKeELekLrqEl~~l~eeK~~A~k~AeEA~~aak 425 (910)
+.=-..|..||+ +|... .|. ...+.|...+..|..++..-..|..+..=.....+
T Consensus 95 ~ALF~EWe~EL~----~Y~~~--sLR~~S~~kL~~tr~~Y~~L~~aM~~Ae~km~PVL~~~~ 150 (201)
T PF11172_consen 95 DALFDEWEQELD----QYSNA--SLRRASEQKLAETRRRYAQLIKAMRRAESKMQPVLAAFR 150 (201)
T ss_pred HHHHHHHHHHHH----HHcCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHH
Confidence 333467888887 44443 222 45567778888888887777766665554444433
No 281
>TIGR02473 flagell_FliJ flagellar export protein FliJ. Members of this family are the FliJ protein found, in nearly every case, in the midst of other flagellar biosynthesis genes in bacgterial genomes. Typically the fliJ gene is found adjacent to the gene for the flagellum-specific ATPase FliI. Sequence scoring in the gray zone between trusted and noise cutoffs include both probable FliJ proteins and components of bacterial type III secretion systems.
Probab=52.89 E-value=2.2e+02 Score=27.51 Aligned_cols=90 Identities=14% Similarity=0.142 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 373 AQLEVAKARHVAAVSELKSVKDEVESLRKDYASLVTEKDI------AVKKAEEAISASKEVEKTVEELTIELIATKESLE 446 (910)
Q Consensus 373 ~eLE~ar~q~a~~laEL~svKeELekLrqEl~~l~eeK~~------A~k~AeEA~~aak~~eekveeLt~EL~~lKEsLe 446 (910)
...+.++..++.+..++......|..|...+......-.. ..........-...+...+..+...+..++..++
T Consensus 13 ~~ed~a~~~la~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~g~~~~~l~~~~~f~~~l~~~i~~q~~~l~~~~~~~e 92 (141)
T TIGR02473 13 KEEEQAKLELAKAQAEFERLETQLQQLIKYREEYEQQALEKVGAGTSALELSNYQRFIRQLDQRIQQQQQELALLQQEVE 92 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555566666666666666666666666555443221 1122222333345566666666666666666666
Q ss_pred HHHHHHHHHHHHHHHH
Q 002541 447 SAHAAHLEAEEQRIGA 462 (910)
Q Consensus 447 ~a~aa~~eAEe~r~~v 462 (910)
.......+|...+..+
T Consensus 93 ~~r~~l~~a~~~~k~l 108 (141)
T TIGR02473 93 AKRERLLEARRELKAL 108 (141)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6665555554444443
No 282
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=52.76 E-value=76 Score=27.80 Aligned_cols=44 Identities=20% Similarity=0.354 Sum_probs=19.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHH
Q 002541 609 ASLEAELDRTRSEIALVQMKEKEAREKTVELPKQLQVAAQEADQ 652 (910)
Q Consensus 609 ~sL~eELer~ksELe~~kakeeeare~~~eL~~eLqqls~EaEe 652 (910)
+.+.++|.+++...-.+..+..++.....+|..++..+..++++
T Consensus 14 Q~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee 57 (61)
T PF08826_consen 14 QAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEE 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444444443
No 283
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=52.72 E-value=1.4e+02 Score=27.54 Aligned_cols=37 Identities=19% Similarity=0.145 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHH
Q 002541 653 AKSLAQAAGEELHKAKEEAEQAKAGASTIESRLTAAR 689 (910)
Q Consensus 653 AKkeae~ae~EL~~lkeEaE~aKaeI~taE~rL~aA~ 689 (910)
+..+...+......+..++.+++.+-..=+.||+.++
T Consensus 37 L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LL 73 (79)
T PRK15422 37 LSQEVQNAQHQREELERENNHLKEQQNGWQERLQALL 73 (79)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444455566666665555566665554
No 284
>PRK11519 tyrosine kinase; Provisional
Probab=52.72 E-value=4.5e+02 Score=33.18 Aligned_cols=16 Identities=38% Similarity=0.277 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 002541 500 KLDTASALLLDLKAEL 515 (910)
Q Consensus 500 kLeea~~~Le~Lk~EL 515 (910)
+.+.+...+.-|..++
T Consensus 261 k~~~a~~a~~fL~~ql 276 (719)
T PRK11519 261 KSEEASKSLAFLAQQL 276 (719)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444333
No 285
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=52.01 E-value=3.3e+02 Score=29.17 Aligned_cols=119 Identities=15% Similarity=0.178 Sum_probs=71.0
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhhHHHHHHHHHHHHhhhhh
Q 002541 288 YVEQELERSHEEMPEYRKRSEAAEVAKNQVLKELDQTKRLVEELKLNLERAQTE--EHQAKQDSELAKLRVEEMEQGIAD 365 (910)
Q Consensus 288 ~~e~EL~~~qeeL~k~Keqle~aE~~k~qal~ELe~aKr~ieeL~~kLE~a~~e--~~~A~e~sE~ak~r~~ELEqgia~ 365 (910)
.+..=+..++.+|.+++..+..+-+...++..++..+...+.++..+-..+... ..-|.++. .+.
T Consensus 28 ~l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~EdLAr~Al-------~~k------ 94 (219)
T TIGR02977 28 MIRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSKGREDLARAAL-------IEK------ 94 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH-------HHH------
Confidence 344445666667777777777777777777777777777777777665555443 22222222 111
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 366 DASVAARAQLEVAKARHVAAVSELKSVKDEVESLRKDYASLVTEKDIAVKKAEEAIS 422 (910)
Q Consensus 366 ~~~~a~k~eLE~ar~q~a~~laEL~svKeELekLrqEl~~l~eeK~~A~k~AeEA~~ 422 (910)
......+.....+|...-..+..++..|..|+..|..+...++.-..+..-+..
T Consensus 95 ---~~~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a 148 (219)
T TIGR02977 95 ---QKAQELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAASS 148 (219)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112233344444566666666677777788888887777776655444444443
No 286
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=51.77 E-value=6e+02 Score=32.12 Aligned_cols=53 Identities=6% Similarity=0.110 Sum_probs=24.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHH
Q 002541 640 PKQLQVAAQEADQAKSLAQAAGEELHKAKEEAEQAKAGASTIESRLTAARKEI 692 (910)
Q Consensus 640 ~~eLqqls~EaEeAKkeae~ae~EL~~lkeEaE~aKaeI~taE~rL~aA~KEl 692 (910)
...+.-....++......-++...+..........+.+...+..++....+++
T Consensus 460 ~~~i~~~k~~~e~le~~~kdL~s~L~~~~q~l~~qr~e~~~~~e~i~~~~ke~ 512 (716)
T KOG4593|consen 460 YREITGQKKRLEKLEHELKDLQSQLSSREQSLLFQREESELLREKIEQYLKEL 512 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 33333334444444444444444444444444444444444444455554444
No 287
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=51.73 E-value=3.4e+02 Score=29.30 Aligned_cols=52 Identities=12% Similarity=0.294 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 002541 580 ATSLQSELEREKSALAAIRQREGMASVAVASLEAELDRTRSEIALVQMKEKE 631 (910)
Q Consensus 580 vesLrsELek~K~ELeelKeke~~a~~eI~sL~eELer~ksELe~~kakeee 631 (910)
+..|...|......|..++..+......+..+..-..++...+..+......
T Consensus 80 ~~eLeq~l~~~~~~L~~~q~~l~~~~~~l~~~~~~p~~aq~~l~~~~~~l~e 131 (240)
T PF12795_consen 80 LEELEQRLSQEQAQLQELQEQLQQENSQLIEIQTRPERAQQQLSEARQRLQE 131 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555555555555555555555444444433
No 288
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=51.55 E-value=4.4e+02 Score=30.51 Aligned_cols=125 Identities=15% Similarity=0.156 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhcch
Q 002541 561 EVKLNIEKATAEVNCLKVAATSLQSELEREKSALAAIRQREGMASVAVASLEAELDRTRSEIALVQMKEKEAREKTVELP 640 (910)
Q Consensus 561 e~K~~Leka~eEl~sL~~~vesLrsELek~K~ELeelKeke~~a~~eI~sL~eELer~ksELe~~kakeeeare~~~eL~ 640 (910)
.+.+.+++-..|...|+..-..|..+|-.++.-+..++...+..+..+..+.++-.+++..|+++.-... +..
T Consensus 89 ~i~es~~e~q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~-------Eke 161 (401)
T PF06785_consen 89 KIRESVEERQQESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECG-------EKE 161 (401)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHh-------HhH
Confidence 3445566666677777777777777777777777777777777777788888888888877777654322 223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhcHHHHHHHHHHHHHHH
Q 002541 641 KQLQVAAQEADQAKSLAQAAGEELHKAK----EEAEQAKAGASTIESRLTAARKEI 692 (910)
Q Consensus 641 ~eLqqls~EaEeAKkeae~ae~EL~~lk----eEaE~aKaeI~taE~rL~aA~KEl 692 (910)
.+-+.+.+|+.++.+--..+-.+.+..- .=+....+-|..+|.+.+++.-|+
T Consensus 162 eesq~LnrELaE~layqq~L~~eyQatf~eq~~ml~kRQ~yI~~LEsKVqDLm~Ei 217 (401)
T PF06785_consen 162 EESQTLNRELAEALAYQQELNDEYQATFVEQHSMLDKRQAYIGKLESKVQDLMYEI 217 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667777666555444443332211 112233456777788877775554
No 289
>PF14992 TMCO5: TMCO5 family
Probab=50.07 E-value=3.2e+02 Score=30.85 Aligned_cols=53 Identities=11% Similarity=0.156 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHH
Q 002541 564 LNIEKATAEVNCLKVAATSLQSELEREKSALAAIRQREGMASVAVASLEAELD 616 (910)
Q Consensus 564 ~~Leka~eEl~sL~~~vesLrsELek~K~ELeelKeke~~a~~eI~sL~eELe 616 (910)
..++..+..+..+...+..+..++.++..+.....+-.......+..|.+.|+
T Consensus 109 ~~lq~sk~~lqql~~~~~~qE~ei~kve~d~~~v~~l~eDq~~~i~klkE~L~ 161 (280)
T PF14992_consen 109 QSLQFSKNKLQQLLESCASQEKEIAKVEDDYQQVHQLCEDQANEIKKLKEKLR 161 (280)
T ss_pred cccHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444455555555555555555554444444444444444443
No 290
>COG5420 Uncharacterized conserved small protein containing a coiled-coil domain [Function unknown]
Probab=49.70 E-value=1.5e+02 Score=26.37 Aligned_cols=61 Identities=23% Similarity=0.392 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 328 VEELKLNLERAQTEEHQAKQDSELAKLRVEEMEQGIADDASVAARAQLEVAKARHVAAVSELKSVKDEVESLR 400 (910)
Q Consensus 328 ieeL~~kLE~a~~e~~~A~e~sE~ak~r~~ELEqgia~~~~~a~k~eLE~ar~q~a~~laEL~svKeELekLr 400 (910)
++++..|+.++|-- .-.++..+..|-+|+-- -|-+-.++|...| .+.+||+.+|+||.++.
T Consensus 8 l~eiqkKvrkLqsr-------Ag~akm~LhDLAEgLP~----~wtei~~VA~kt~-~~yaeLD~~k~ELakle 68 (71)
T COG5420 8 LEEIQKKVRKLQSR-------AGQAKMELHDLAEGLPV----KWTEIMAVAEKTF-EAYAELDAAKRELAKLE 68 (71)
T ss_pred HHHHHHHHHHHHHH-------HHHHHhhHHHHhccCCc----cHHHHHHHHHHHH-HHHHHHHHHHHHHHHhh
Confidence 45555666666544 23456677777666543 3666566665555 57899999999998875
No 291
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=49.22 E-value=34 Score=39.06 Aligned_cols=13 Identities=8% Similarity=0.212 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHHH
Q 002541 642 QLQVAAQEADQAK 654 (910)
Q Consensus 642 eLqqls~EaEeAK 654 (910)
.+.-+..++-.+|
T Consensus 120 ~v~~lsTdvsNLk 132 (326)
T PF04582_consen 120 SVSALSTDVSNLK 132 (326)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhh
Confidence 3333333333333
No 292
>PF13166 AAA_13: AAA domain
Probab=49.15 E-value=6.2e+02 Score=31.51 Aligned_cols=51 Identities=16% Similarity=0.254 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHH
Q 002541 568 KATAEVNCLKVAATSLQSELEREKSALAAIRQREGMASVAVASLEAELDRT 618 (910)
Q Consensus 568 ka~eEl~sL~~~vesLrsELek~K~ELeelKeke~~a~~eI~sL~eELer~ 618 (910)
.....+..+...+..++.++...+..+.+++.+......-+..+..+|...
T Consensus 421 ~~~~~i~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~iN~~L~~~ 471 (712)
T PF13166_consen 421 ELEKEINSLEKKLKKAKEEIKKIEKEIKELEAQLKNTEPAADRINEELKRL 471 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 333344444444444445555555555555555554455556666666555
No 293
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=48.97 E-value=6.6e+02 Score=31.79 Aligned_cols=17 Identities=0% Similarity=0.237 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 002541 641 KQLQVAAQEADQAKSLA 657 (910)
Q Consensus 641 ~eLqqls~EaEeAKkea 657 (910)
.++.++.++.+-.+...
T Consensus 370 ~~~~~L~R~~~~~~~lY 386 (726)
T PRK09841 370 QEVLRLSRDVEAGRAVY 386 (726)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444443333
No 294
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=48.97 E-value=7.8e+02 Score=32.64 Aligned_cols=33 Identities=21% Similarity=0.245 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 419 EAISASKEVEKTVEELTIELIATKESLESAHAA 451 (910)
Q Consensus 419 EA~~aak~~eekveeLt~EL~~lKEsLe~a~aa 451 (910)
.+......+..++..-..++..+++.+..++..
T Consensus 480 ~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~ 512 (1041)
T KOG0243|consen 480 LLKEEKEKLKSKLQNKNKELESLKEELQQAKAT 512 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555666666666666666666654
No 295
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=48.21 E-value=5.3e+02 Score=30.52 Aligned_cols=17 Identities=12% Similarity=0.153 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 002541 552 VASAKKELEEVKLNIEK 568 (910)
Q Consensus 552 L~sakkELee~K~~Lek 568 (910)
+..+...+..+...+..
T Consensus 99 ~~~~~~~~~~~~~~~~r 115 (457)
T TIGR01000 99 KQLLEQQLDNLKDQKKS 115 (457)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344344333333333
No 296
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=48.08 E-value=4.3e+02 Score=29.41 Aligned_cols=6 Identities=17% Similarity=0.257 Sum_probs=3.1
Q ss_pred ccchhh
Q 002541 888 SLFPRL 893 (910)
Q Consensus 888 ~~~P~~ 893 (910)
.+||-|
T Consensus 316 ~~~~Gm 321 (327)
T TIGR02971 316 GRLTNL 321 (327)
T ss_pred cccccc
Confidence 345555
No 297
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=47.92 E-value=5.6e+02 Score=30.69 Aligned_cols=126 Identities=9% Similarity=0.053 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHH
Q 002541 572 EVNCLKVAATSLQSELEREKSALAAIRQREGMA--SVAVASLEAELDRTRSEIALVQMKEKEAREKTVELPKQLQVAAQE 649 (910)
Q Consensus 572 El~sL~~~vesLrsELek~K~ELeelKeke~~a--~~eI~sL~eELer~ksELe~~kakeeeare~~~eL~~eLqqls~E 649 (910)
.+.-.+..++.....|...+..|...|++.+.. ...+..+..-+..+..+|..++.+....+..+..-.-.+..+...
T Consensus 243 ~v~~Ae~ev~~Ae~rl~~Ar~aL~~fRn~~gvlDP~~~a~~~~~lI~~Le~qLa~~~aeL~~L~~~~~p~sPqV~~l~~r 322 (434)
T PRK15178 243 RILWLENDVKSAQENLGAARLELLKIQHIQKDIDPKETITAIYQLIAGFETQLAEAKAEYAQLMVNGLDQNPLIPRLSAK 322 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHH
Confidence 344444455555566666666666666555433 233444444444444444444443333322222223345555555
Q ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHhcHHHHHHHHHHHHHHHHHHHH
Q 002541 650 ADQAKSLAQAAGEELHKAK--EEAEQAKAGASTIESRLTAARKEIEAARA 697 (910)
Q Consensus 650 aEeAKkeae~ae~EL~~lk--eEaE~aKaeI~taE~rL~aA~KElEAAKA 697 (910)
+..++..+...+..+.... .-.-..-++-..+..+.+-|.+.|..|-+
T Consensus 323 I~aLe~QIa~er~kl~~~~g~~~la~~laeYe~L~le~efAe~~y~sAla 372 (434)
T PRK15178 323 IKVLEKQIGEQRNRLSNKLGSQGSSESLSLFEDLRLQSEIAKARWESALQ 372 (434)
T ss_pred HHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555554444444432110 00111112334445555555555555433
No 298
>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein. The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].
Probab=47.56 E-value=1.6e+02 Score=26.67 Aligned_cols=54 Identities=22% Similarity=0.292 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHH
Q 002541 571 AEVNCLKVAATSLQSELEREKSALAAIRQREGMASVAVASLEAELDRTRSEIAL 624 (910)
Q Consensus 571 eEl~sL~~~vesLrsELek~K~ELeelKeke~~a~~eI~sL~eELer~ksELe~ 624 (910)
+|-+.+--..-.||..|...+.+|...-.+...+.+-|.+|..|...++..|..
T Consensus 15 nEWDa~mLE~f~LRk~l~~~rqELs~aLYq~DAA~RViArl~kErd~ar~~l~~ 68 (70)
T PF08606_consen 15 NEWDALMLENFTLRKQLDQTRQELSHALYQHDAACRVIARLLKERDEAREALAE 68 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHh
Confidence 333444444556778888888889999888899999999999888888777654
No 299
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=47.41 E-value=2.3e+02 Score=26.05 Aligned_cols=11 Identities=45% Similarity=0.727 Sum_probs=4.8
Q ss_pred HHHHHHHHHHH
Q 002541 612 EAELDRTRSEI 622 (910)
Q Consensus 612 ~eELer~ksEL 622 (910)
++|+.+++.+|
T Consensus 63 EeEI~rLr~eL 73 (79)
T PF08581_consen 63 EEEIARLRREL 73 (79)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34444444443
No 300
>KOG4687 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=47.38 E-value=4.6e+02 Score=29.54 Aligned_cols=85 Identities=20% Similarity=0.276 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhhhhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 326 RLVEELKLNLERAQTEEHQAKQDSELAKLRVEEMEQGIADDAS--VAARAQLEVAKARHVAAVSELKSVKDEVESLRKDY 403 (910)
Q Consensus 326 r~ieeL~~kLE~a~~e~~~A~e~sE~ak~r~~ELEqgia~~~~--~a~k~eLE~ar~q~a~~laEL~svKeELekLrqEl 403 (910)
..|--|...|++...+++...--.|..+.++.-++..+.-... --.+-+-- .....+++.+..+++|-.+|+.+.
T Consensus 30 dairiL~QdLEkfe~Ekd~~a~~aETLeln~ealere~eLlaa~gc~a~~e~g---terqdLaa~i~etkeeNlkLrTd~ 106 (389)
T KOG4687|consen 30 DAIRILGQDLEKFENEKDGLAARAETLELNLEALERELELLAACGCDAKIEFG---TERQDLAADIEETKEENLKLRTDR 106 (389)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHhcCCCchhhcc---chhhHHHHHHHHHHHHhHhhhHHH
Confidence 3455667778888888888877777777777777653221100 00111111 123456677888999999999999
Q ss_pred HHHHHHHHHH
Q 002541 404 ASLVTEKDIA 413 (910)
Q Consensus 404 ~~l~eeK~~A 413 (910)
..+++.+..-
T Consensus 107 eaL~dq~adL 116 (389)
T KOG4687|consen 107 EALLDQKADL 116 (389)
T ss_pred HHHHHHHHHH
Confidence 9888887643
No 301
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=47.38 E-value=1.8e+02 Score=31.06 Aligned_cols=33 Identities=27% Similarity=0.355 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 369 VAARAQLEVAKARHVAAVSELKSVKDEVESLRK 401 (910)
Q Consensus 369 ~a~k~eLE~ar~q~a~~laEL~svKeELekLrq 401 (910)
...+..|+.+++|-..+-.=|..=++||+.|++
T Consensus 163 ~~v~~Dl~~ie~QV~~Le~~L~~k~~eL~~L~q 195 (195)
T PF12761_consen 163 KSVREDLDTIEEQVDGLESHLSSKKQELQQLRQ 195 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 456778888888877777777777788877753
No 302
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=47.17 E-value=4.9e+02 Score=29.73 Aligned_cols=103 Identities=14% Similarity=0.180 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHH
Q 002541 582 SLQSELEREKSALAAIRQREGMASVAVASLEAELDRTRSEIALVQMKEKEAREKTVELPKQLQVAAQEADQAKSLAQAAG 661 (910)
Q Consensus 582 sLrsELek~K~ELeelKeke~~a~~eI~sL~eELer~ksELe~~kakeeeare~~~eL~~eLqqls~EaEeAKkeae~ae 661 (910)
.|+..+.+....|...+........+|.+|...+......+..-..-+ ...+.+-...+.++.....++...+...+
T Consensus 71 ql~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~y~~~~~~~~~~~---~~~~~n~~~~~~~~t~~la~~t~~L~~~~ 147 (301)
T PF06120_consen 71 QLRANIAKAEESIAAQKRAIEDLQKKIDSLKDQIKNYQQQLAEKGITE---NGYIINHLMSQADATRKLAEATRELAVAQ 147 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCc---chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555444444455555544443332221110000 00011111123344444444555555555
Q ss_pred HHHHHHHHHHHHHHhcHHHHHHHHHH
Q 002541 662 EELHKAKEEAEQAKAGASTIESRLTA 687 (910)
Q Consensus 662 ~EL~~lkeEaE~aKaeI~taE~rL~a 687 (910)
..+..+..-...+...+.++..+...
T Consensus 148 ~~l~q~~~k~~~~q~~l~~~~~~~~~ 173 (301)
T PF06120_consen 148 ERLEQMQSKASETQATLNDLTEQRID 173 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555556666666655554443
No 303
>KOG4787 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.78 E-value=5.9e+02 Score=31.61 Aligned_cols=111 Identities=20% Similarity=0.168 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 554 SAKKELEEVKLNIEKATAEVNCLKVAATSLQSELEREKSALAAIRQREGMASVAVASLEAELDRTRSEIALVQMKEKEAR 633 (910)
Q Consensus 554 sakkELee~K~~Leka~eEl~sL~~~vesLrsELek~K~ELeelKeke~~a~~eI~sL~eELer~ksELe~~kakeeear 633 (910)
++..-+.+++.+++..++.-..|. ++.++..-+-++..++.++..+..--.+|-++-.-++.+|-..++...+.+
T Consensus 376 ~A~~K~~E~K~~~~~~~~~~r~i~-----~~~~~~~~~~~~s~~~r~L~~~~~~~~~~~~~~~s~~~Ei~~~QA~M~E~~ 450 (852)
T KOG4787|consen 376 SAHSKAGEFKLTPEMEKDMSKMIV-----TISELERKNLELTTQVKQLETKVTPKPNFVVPSGTTTTELRKEQAQMNELK 450 (852)
T ss_pred HHHHHhhhhhcChHhHhHHHHHHH-----HHHHHHHhcccHHHHHHHHhhccccchhhcCCCcchHHHHHHHHHHHHHHH
Confidence 455677888888888887655554 567777777778888888877776666666666666666666655554444
Q ss_pred Hhh-hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 634 EKT-VELPKQLQVAAQEADQAKSLAQAAGEELHKAKE 669 (910)
Q Consensus 634 e~~-~eL~~eLqqls~EaEeAKkeae~ae~EL~~lke 669 (910)
+.. .+=-.++..+...+++|.+.+.-+...|.++..
T Consensus 451 Dt~~~~dV~~~~sL~~~LeqAsK~CRIL~~RL~K~~R 487 (852)
T KOG4787|consen 451 DTVFKSDVQKVISLATKLEQANKQCRILNERLNKLHR 487 (852)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHhHHHH
Confidence 432 223456788899999999999999999888766
No 304
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=46.56 E-value=6.1e+02 Score=30.71 Aligned_cols=47 Identities=13% Similarity=0.106 Sum_probs=23.3
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 291 QELERSHEEMPEYRKRSEAAEVAKNQVLKELDQTKRLVEELKLNLERA 338 (910)
Q Consensus 291 ~EL~~~qeeL~k~Keqle~aE~~k~qal~ELe~aKr~ieeL~~kLE~a 338 (910)
.+++.++.+..+.-++...|+. ..+....|++-+|.+..=..+++.+
T Consensus 271 ~~i~~lk~~n~~l~e~i~ea~k-~s~~i~~l~ek~r~l~~D~nk~~~~ 317 (622)
T COG5185 271 TDIANLKTQNDNLYEKIQEAMK-ISQKIKTLREKWRALKSDSNKYENY 317 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 3444444444444444444432 3455566666666655544444433
No 305
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=46.48 E-value=3.6e+02 Score=27.96 Aligned_cols=21 Identities=29% Similarity=0.385 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 002541 579 AATSLQSELEREKSALAAIRQ 599 (910)
Q Consensus 579 ~vesLrsELek~K~ELeelKe 599 (910)
.+..|+.+.++++.+++.++.
T Consensus 74 ~~~~lr~~~e~L~~eie~l~~ 94 (177)
T PF07798_consen 74 EFAELRSENEKLQREIEKLRQ 94 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555444
No 306
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=45.35 E-value=2.8e+02 Score=26.47 Aligned_cols=33 Identities=3% Similarity=0.155 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHH
Q 002541 655 SLAQAAGEELHKAKEEAEQAKAGASTIESRLTA 687 (910)
Q Consensus 655 keae~ae~EL~~lkeEaE~aKaeI~taE~rL~a 687 (910)
...+.+...+..+......++..+..++..|+.
T Consensus 74 ~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~ 106 (110)
T TIGR02338 74 EKKETLELRVKTLQRQEERLREQLKELQEKIQE 106 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444443
No 307
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=45.24 E-value=4.8e+02 Score=29.17 Aligned_cols=20 Identities=30% Similarity=0.425 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 002541 498 RSKLDTASALLLDLKAELSA 517 (910)
Q Consensus 498 eakLeea~~~Le~Lk~ELa~ 517 (910)
+..|+....+|+.+.+||++
T Consensus 183 K~ele~tk~Klee~QnelsA 202 (330)
T KOG2991|consen 183 KGELEQTKDKLEEAQNELSA 202 (330)
T ss_pred HHHHHHHHHHHHHHHhhhhe
Confidence 33344445555555555433
No 308
>PF13942 Lipoprotein_20: YfhG lipoprotein
Probab=44.96 E-value=1.8e+02 Score=30.49 Aligned_cols=84 Identities=17% Similarity=0.262 Sum_probs=58.0
Q ss_pred ccchHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 002541 279 RMQTVERRKYVEQELERSHEEMPEYRKRSEAAEVAKNQVLKELDQTKRLVEELKLNLERAQTEEHQAKQDSELAKLRVEE 358 (910)
Q Consensus 279 r~~~~ER~~~~e~EL~~~qeeL~k~Keqle~aE~~k~qal~ELe~aKr~ieeL~~kLE~a~~e~~~A~e~sE~ak~r~~E 358 (910)
.+.++|||..++. |..|.-+.=.+-.-.-|+=- +.+.+.-....++.|+.-
T Consensus 73 ~~T~~ERR~~~~~--------l~~y~~~~P~~vRPL~QlWR---------------------e~Q~lql~L~eEr~Ry~r 123 (179)
T PF13942_consen 73 EPTPAERRQMVDR--------LNSYSLQFPASVRPLLQLWR---------------------EQQVLQLQLSEERARYQR 123 (179)
T ss_pred CCCHHHHHHHHHH--------HHHhhhhcCHHHhHHHHHHH---------------------HhHHHHHHHHHHHHHHHH
Confidence 4678899998876 55577666555444433322 222233334457789999
Q ss_pred HHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 359 MEQGIADDASVAARAQLEVAKARHVAAVSELKSVKDEVESL 399 (910)
Q Consensus 359 LEqgia~~~~~a~k~eLE~ar~q~a~~laEL~svKeELekL 399 (910)
|++.- ..+|+..|+++..+-.+|..+..-|+.|
T Consensus 124 LQqss--------D~~lD~Lr~qq~~Lq~qL~~T~RKLEnL 156 (179)
T PF13942_consen 124 LQQSS--------DSELDALRQQQQRLQYQLDTTTRKLENL 156 (179)
T ss_pred HHHhh--------HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 98753 3578999999999999999998888877
No 309
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=44.63 E-value=6.3e+02 Score=30.28 Aligned_cols=53 Identities=19% Similarity=0.234 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh---------------cHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 650 ADQAKSLAQAAGEELHKAKEEAEQAKA---------------GASTIESRLTAARKEIEAARASEKLA 702 (910)
Q Consensus 650 aEeAKkeae~ae~EL~~lkeEaE~aKa---------------eI~taE~rL~aA~KElEAAKAsEa~A 702 (910)
..-..+....+..++..+++.++.+|. .++++..+|.+++.-+...-+.-+.-
T Consensus 349 ~q~~~kkrqnaekql~~Ake~~eklkKKrssv~gtl~vahgsslDdVD~kIleak~al~evtt~lrEr 416 (575)
T KOG4403|consen 349 VQYYNKKRQNAEKQLKEAKEMAEKLKKKRSSVFGTLHVAHGSSLDDVDHKILEAKSALSEVTTLLRER 416 (575)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHhhcchheeeeeccccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 334566667788888888888888874 56777888877777665554444433
No 310
>cd07648 F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proteins in this group have been named FCH domain Only (FCHO) proteins. Vertebrates have two members, FCHO1 and FCHO2. These proteins contain an F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=44.50 E-value=4.5e+02 Score=28.63 Aligned_cols=114 Identities=16% Similarity=0.140 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHH
Q 002541 572 EVNCLKVAATSLQSELEREKSALAAIRQREGMASVAVASLEAELDRTRSEIALVQMKEKEAREKTVELPKQLQVAAQEAD 651 (910)
Q Consensus 572 El~sL~~~vesLrsELek~K~ELeelKeke~~a~~eI~sL~eELer~ksELe~~kakeeeare~~~eL~~eLqqls~EaE 651 (910)
+.+++......++.+++..=..+..+-..+......+..+.+.+.+.+..+...... .......++.....++
T Consensus 54 ~~gt~~~~w~~i~~~~e~~a~~H~~l~~~L~~~~~~l~~~~~~~~k~rK~~k~~~~~-------~~k~~~~~~~~~~~l~ 126 (261)
T cd07648 54 QLGTFAPLWLVLRVSTEKLSELHLQLVQKLQELIKDVQKYGEEQHKKHKKVKEEESG-------TAEAVQAIQTTTAALQ 126 (261)
T ss_pred CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-------HHHHHHHHHHHHHHHH
Confidence 367888888888888888888888887777766666777766666655443322111 1122223444444455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHH
Q 002541 652 QAKSLAQAAGEELHKAKEEAEQAKAGASTIESRLTAARKEIE 693 (910)
Q Consensus 652 eAKkeae~ae~EL~~lkeEaE~aKaeI~taE~rL~aA~KElE 693 (910)
.+|........++..++.... ....++.++.++..+..+|.
T Consensus 127 KaK~~Y~~~c~e~e~~~~~~~-s~k~~eK~~~K~~ka~~~Y~ 167 (261)
T cd07648 127 KAKEAYHARCLELERLRRENA-SPKEIEKAEAKLKKAQDEYK 167 (261)
T ss_pred HHHHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHHHH
Confidence 555555555555554433221 23344444555544444443
No 311
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=44.38 E-value=3.4e+02 Score=27.13 Aligned_cols=24 Identities=21% Similarity=0.353 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 577 KVAATSLQSELEREKSALAAIRQR 600 (910)
Q Consensus 577 ~~~vesLrsELek~K~ELeelKek 600 (910)
...+.++-..|+++-+.|..+|..
T Consensus 42 ~~A~~~v~kql~~vs~~l~~tKkh 65 (126)
T PF07889_consen 42 SDAVASVSKQLEQVSESLSSTKKH 65 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555443
No 312
>PLN02939 transferase, transferring glycosyl groups
Probab=42.91 E-value=9.4e+02 Score=31.84 Aligned_cols=21 Identities=33% Similarity=0.373 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 002541 386 VSELKSVKDEVESLRKDYASL 406 (910)
Q Consensus 386 laEL~svKeELekLrqEl~~l 406 (910)
..||...|+|---|+.++..+
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~ 245 (977)
T PLN02939 225 SKELDVLKEENMLLKDDIQFL 245 (977)
T ss_pred HHHHHHHHHHhHHHHHHHHHH
Confidence 344555555555555444443
No 313
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=42.73 E-value=7e+02 Score=30.27 Aligned_cols=50 Identities=20% Similarity=0.302 Sum_probs=28.8
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Q 002541 291 QELERSHEEMPEYRKRSEAAEVAKNQVLKELDQTKRL----VEELKLNLERAQT 340 (910)
Q Consensus 291 ~EL~~~qeeL~k~Keqle~aE~~k~qal~ELe~aKr~----ieeL~~kLE~a~~ 340 (910)
.+|..+.+++...+.++......+......-...++. ++.|..+|..+..
T Consensus 116 ~~l~e~~~El~~l~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~sL~ekl~lld~ 169 (511)
T PF09787_consen 116 IRLQELDQELRRLRRQLEELQNEKSRILSDESTVSRLQNGAPRSLQEKLSLLDE 169 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3466666777777777777755666655544444444 2555555544443
No 314
>PRK11281 hypothetical protein; Provisional
Probab=42.60 E-value=1e+03 Score=32.08 Aligned_cols=58 Identities=14% Similarity=0.127 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 382 HVAAVSELKSVKDEVESLRKDYASLVTEKDIAVKKAEEAISASKEVEKTVEELTIELI 439 (910)
Q Consensus 382 ~a~~laEL~svKeELekLrqEl~~l~eeK~~A~k~AeEA~~aak~~eekveeLt~EL~ 439 (910)
....-+|+...+.++.-.++++.....-.+....+.+.........+..+..|+..+.
T Consensus 194 ~~~l~ae~~~l~~~~~~~~~~l~~~~~l~~l~~~q~d~~~~~~~~~~~~~~~lq~~in 251 (1113)
T PRK11281 194 RVLLQAEQALLNAQNDLQRKSLEGNTQLQDLLQKQRDYLTARIQRLEHQLQLLQEAIN 251 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555666666666555554555555555555555555555555555553
No 315
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=42.47 E-value=7.5e+02 Score=30.61 Aligned_cols=36 Identities=25% Similarity=0.434 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Q 002541 326 RLVEELKLNLERAQTEEHQAKQDSELAKLRVEEMEQ 361 (910)
Q Consensus 326 r~ieeL~~kLE~a~~e~~~A~e~sE~ak~r~~ELEq 361 (910)
.....+..+|+..+...+...+..+..+|++.||+.
T Consensus 164 ~~w~~~~~~l~~~~~~~~e~~~~~d~L~fq~~Ele~ 199 (557)
T COG0497 164 QAWKQARRELEDLQEKERERAQRADLLQFQLEELEE 199 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444555666666666777788889999999986
No 316
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=42.30 E-value=3.5e+02 Score=26.68 Aligned_cols=18 Identities=22% Similarity=0.198 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 002541 658 QAAGEELHKAKEEAEQAK 675 (910)
Q Consensus 658 e~ae~EL~~lkeEaE~aK 675 (910)
..+...+..+...++...
T Consensus 111 ~~l~~~l~~~~~~~~~~~ 128 (140)
T PRK03947 111 EKLEEALQKLASRIAQLA 128 (140)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 317
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=42.13 E-value=6.2e+02 Score=29.51 Aligned_cols=28 Identities=11% Similarity=0.246 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 680 TIESRLTAARKEIEAARASEKLALAAIK 707 (910)
Q Consensus 680 taE~rL~aA~KElEAAKAsEa~Ala~ik 707 (910)
..+.++..++++++.++.-=...+...+
T Consensus 339 ~~~~~~~~L~r~~~~~~~~y~~ll~r~~ 366 (444)
T TIGR03017 339 RQRDEMSVLQRDVENAQRAYDAAMQRYT 366 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555556666555544444444443
No 318
>cd07680 F-BAR_PACSIN1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 1 (PACSIN1). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 1 or Syndapin I is expressed specifically in the brain and is localized in neurites and synaptic boutons. It binds the brain-specific proteins dynamin I, synaptojanin, synapsin I, and neural Wiskott-Aldrich syndrome protein (nWASP), and functions as a link between the cytoskeletal machinery and synaptic vesicle endocytosis. PACSIN 1 interacts with huntingtin and may be implicated in the neuropatholog
Probab=41.64 E-value=5.4e+02 Score=28.65 Aligned_cols=33 Identities=3% Similarity=0.240 Sum_probs=17.8
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 676 AGASTIESRLTAARKEIEAARASEKLALAAIKA 708 (910)
Q Consensus 676 aeI~taE~rL~aA~KElEAAKAsEa~Ala~ika 708 (910)
..++.+..++.....+++.++..=+.+|..|..
T Consensus 168 ~q~eK~~~k~~k~~~~~~~sk~~Y~~~l~~ln~ 200 (258)
T cd07680 168 EQQKKLQDKVDKCKQDVQKTQEKYEKVLDDVGK 200 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555555543
No 319
>PRK12472 hypothetical protein; Provisional
Probab=41.58 E-value=4e+02 Score=32.29 Aligned_cols=89 Identities=25% Similarity=0.248 Sum_probs=55.8
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhhhhhHHHH
Q 002541 293 LERSHEEMPEYRKRSEAAEVAKNQVLKELDQTKRLVEELKLNLERAQTEEHQAKQDSELAKLRVEEMEQGIADDASVAAR 372 (910)
Q Consensus 293 L~~~qeeL~k~Keqle~aE~~k~qal~ELe~aKr~ieeL~~kLE~a~~e~~~A~e~sE~ak~r~~ELEqgia~~~~~a~k 372 (910)
......++..++..+..+|..|+.+..+|..+-|.+...+..= ++.++.+.++.... .-..+.
T Consensus 213 ~~~~~~~~~~~~~~l~~~e~~~~~a~~~l~~adk~l~~a~~d~----------------~~~~a~~~~~~~~~-~~~~a~ 275 (508)
T PRK12472 213 AAAAAREAAPLKASLRKLERAKARADAELKRADKALAAAKTDE----------------AKARAEERQQKAAQ-QAAEAA 275 (508)
T ss_pred HHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccch----------------hhhhHHHHHHHHHH-HHHHHH
Confidence 4455667788888888999999999998888888765554322 23333343333222 123456
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 373 AQLEVAKARHVAAVSELKSVKDEVES 398 (910)
Q Consensus 373 ~eLE~ar~q~a~~laEL~svKeELek 398 (910)
.+|+.|+..-+.....+..+|+....
T Consensus 276 ~~~~~a~~~~~~~~~~~~~~~~a~~~ 301 (508)
T PRK12472 276 TQLDTAKADAEAKRAAAAATKEAAKA 301 (508)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 67777777766666666666654433
No 320
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=41.11 E-value=4.8e+02 Score=27.94 Aligned_cols=20 Identities=25% Similarity=0.390 Sum_probs=13.1
Q ss_pred HHhcCCcccccccccchHHH
Q 002541 266 VSKFGGIVDWKAHRMQTVER 285 (910)
Q Consensus 266 vslFGe~~~~K~~r~~~~ER 285 (910)
|-||-.+..|+-.+.....|
T Consensus 66 VALfq~k~fWRViKt~d~~~ 85 (192)
T PF11180_consen 66 VALFQQKAFWRVIKTQDEAR 85 (192)
T ss_pred eeeeecCceeEeeecCChhh
Confidence 56888998998554443333
No 321
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=41.00 E-value=2e+02 Score=24.90 Aligned_cols=42 Identities=17% Similarity=0.326 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 560 EEVKLNIEKATAEVNCLKVAATSLQSELEREKSALAAIRQRE 601 (910)
Q Consensus 560 ee~K~~Leka~eEl~sL~~~vesLrsELek~K~ELeelKeke 601 (910)
+++...+..+...+..|...+..|+.++...|.+-....+++
T Consensus 6 d~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~Rl 47 (56)
T PF04728_consen 6 DQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRL 47 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444445555555555444444443
No 322
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=40.90 E-value=3.8e+02 Score=32.38 Aligned_cols=31 Identities=16% Similarity=0.304 Sum_probs=15.5
Q ss_pred HHhHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 002541 284 ERRKYVEQELERSHEEMPEYRKRSEAAEVAK 314 (910)
Q Consensus 284 ER~~~~e~EL~~~qeeL~k~Keqle~aE~~k 314 (910)
++...++.+|..++.++..+..++...+...
T Consensus 71 ~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~ 101 (525)
T TIGR02231 71 ERLAELRKQIRELEAELRDLEDRGDALKALA 101 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555444444333
No 323
>PTZ00121 MAEBL; Provisional
Probab=40.80 E-value=1.2e+03 Score=32.41 Aligned_cols=31 Identities=26% Similarity=0.298 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 413 AVKKAEEAISASKEVEKTVEELTIELIATKE 443 (910)
Q Consensus 413 A~k~AeEA~~aak~~eekveeLt~EL~~lKE 443 (910)
+.+.|+++.+.++...++.+++..-..+.+-
T Consensus 1313 ea~kAee~~kkae~~~kka~~~~k~~e~~kk 1343 (2084)
T PTZ00121 1313 EAKKADEAKKKAEEAKKKADAAKKKAEEAKK 1343 (2084)
T ss_pred HHHHHHHHHHhHHHHHhhhHHHHhhHHHHHh
Confidence 3334444444455555555555444443333
No 324
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=40.38 E-value=8.7e+02 Score=30.74 Aligned_cols=33 Identities=15% Similarity=0.291 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHH
Q 002541 660 AGEELHKAKEEAEQAKAGASTIESRLTAARKEI 692 (910)
Q Consensus 660 ae~EL~~lkeEaE~aKaeI~taE~rL~aA~KEl 692 (910)
+......+..+.......+...-..|..+..++
T Consensus 260 l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l 292 (670)
T KOG0239|consen 260 LNDQVSLLTREVQEALKESNTLQSDLESLEENL 292 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333
No 325
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=40.18 E-value=20 Score=34.64 Aligned_cols=32 Identities=19% Similarity=0.384 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 566 IEKATAEVNCLKVAATSLQSELEREKSALAAI 597 (910)
Q Consensus 566 Leka~eEl~sL~~~vesLrsELek~K~ELeel 597 (910)
|..+..++..+......|+.++..+...+..+
T Consensus 27 l~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~ 58 (131)
T PF05103_consen 27 LDELAEELERLQRENAELKEEIEELQAQLEEL 58 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCCT----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 33333444444433334444444444333333
No 326
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=39.98 E-value=7e+02 Score=29.54 Aligned_cols=16 Identities=19% Similarity=0.349 Sum_probs=9.9
Q ss_pred hHHHHHHHHHHHHhhh
Q 002541 348 DSELAKLRVEEMEQGI 363 (910)
Q Consensus 348 ~sE~ak~r~~ELEqgi 363 (910)
...-+++|++-||..+
T Consensus 252 ~LqEEr~R~erLEeql 267 (395)
T PF10267_consen 252 ALQEERYRYERLEEQL 267 (395)
T ss_pred HHHHhHHHHHHHHHHH
Confidence 3444567887787544
No 327
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=39.77 E-value=6.7e+02 Score=30.03 Aligned_cols=75 Identities=23% Similarity=0.364 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Q 002541 287 KYVEQELERSHEEMPEYRKRSEAAEVA-----KNQVLKELDQTKRLVEELKLNLERAQTEEHQAKQDSELAKLRVEEMEQ 361 (910)
Q Consensus 287 ~~~e~EL~~~qeeL~k~Keqle~aE~~-----k~qal~ELe~aKr~ieeL~~kLE~a~~e~~~A~e~sE~ak~r~~ELEq 361 (910)
..++.|++-+..+...|+..++-.+.. -...+.|++..+..=+.|-..|+++.++....-.+....+++..++.+
T Consensus 146 ~~ld~e~~~~~~e~~~Y~~~l~~Le~~~~~~~~~~~~~e~~~l~~eE~~L~q~lk~le~~~~~l~~~l~e~~~~~~~~~e 225 (447)
T KOG2751|consen 146 NKLDKEVEDAEDEVDTYKACLQRLEQQNQDVSEEDLLKELKNLKEEEERLLQQLEELEKEEAELDHQLKELEFKAERLNE 225 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788999999999999998887764 345677888888888888888888877765554444444444444433
No 328
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=39.59 E-value=6.5e+02 Score=31.19 Aligned_cols=67 Identities=21% Similarity=0.249 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHH
Q 002541 559 LEEVKLNIEKATAEVNCLKVAATSLQSELEREKSALAAIRQREGMASVAVASLEAELDRTRSEIALVQMK 628 (910)
Q Consensus 559 Lee~K~~Leka~eEl~sL~~~vesLrsELek~K~ELeelKeke~~a~~eI~sL~eELer~ksELe~~kak 628 (910)
|=+.|-.|.-+++++ =+.|+.|..|-.-++.+|+..++---..+..|-.|++||.++++++..++.+
T Consensus 313 LLetKNALNiVKNDL---IakVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k~ea~~ar~~ 379 (832)
T KOG2077|consen 313 LLETKNALNIVKNDL---IAKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAKAEAEDARQK 379 (832)
T ss_pred HHhhhhHHHHHHHHH---HHHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334455555555543 3466777777777777777777766667778888999999999988777554
No 329
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=39.52 E-value=5.8e+02 Score=28.48 Aligned_cols=35 Identities=14% Similarity=0.160 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 370 AARAQLEVAKARHVAAVSELKSVKDEVESLRKDYA 404 (910)
Q Consensus 370 a~k~eLE~ar~q~a~~laEL~svKeELekLrqEl~ 404 (910)
.+..+|..+..|..-+.++-...+-|+..++..++
T Consensus 49 elesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e 83 (333)
T KOG1853|consen 49 ELESQLDQLETRNRDLETRNQRLTTEQERNKEKQE 83 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666655555555555555555555443
No 330
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=39.14 E-value=6.4e+02 Score=28.81 Aligned_cols=53 Identities=23% Similarity=0.317 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 374 QLEVAKARHVAAVSELKSVKDEVESLRKDYASLVTEKDIAVKKAEEAISASKE 426 (910)
Q Consensus 374 eLE~ar~q~a~~laEL~svKeELekLrqEl~~l~eeK~~A~k~AeEA~~aak~ 426 (910)
+|.+-....+.+-+.|+.-|+-=++|..++.+...-..+|+...+..+.+.+.
T Consensus 64 QLn~L~aENt~L~SkLe~EKq~kerLEtEiES~rsRLaaAi~d~dqsq~skrd 116 (305)
T PF14915_consen 64 QLNVLKAENTMLNSKLEKEKQNKERLETEIESYRSRLAAAIQDHDQSQTSKRD 116 (305)
T ss_pred hHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHH
Confidence 44444444555555555555555555555555555555555544444444333
No 331
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=39.13 E-value=5.6e+02 Score=28.14 Aligned_cols=56 Identities=14% Similarity=0.096 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002541 547 DIQAAVASAKKELEEVKLNIEKATAEVNCLKVAATSLQSELEREKSALAAIRQREGMA 604 (910)
Q Consensus 547 ~l~esL~sakkELee~K~~Leka~eEl~sL~~~vesLrsELek~K~ELeelKeke~~a 604 (910)
..+.+|+. .|+++++.+..-+...+..++..-+....+++..+..|+.+.......
T Consensus 35 ~~q~~l~n--ee~~eLk~qnkli~K~l~ei~~~qd~reK~~~~I~ssL~eTtkdf~~~ 90 (230)
T PF03904_consen 35 KTQMSLEN--EEIQELKRQNKLIIKYLSEIEEKQDIREKNLKEIKSSLEETTKDFIDK 90 (230)
T ss_pred HHHHHHhH--HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444433 378888888888888888888888888888888888877765555444
No 332
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=38.88 E-value=3e+02 Score=24.87 Aligned_cols=28 Identities=18% Similarity=0.092 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHhHHHH
Q 002541 587 LEREKSALAAIRQREGMASVAVASLEAE 614 (910)
Q Consensus 587 Lek~K~ELeelKeke~~a~~eI~sL~eE 614 (910)
-..++.+...+++........+.+|...
T Consensus 41 ~~~L~~en~~L~~e~~~~~~rl~~LL~k 68 (72)
T PF06005_consen 41 NEELKEENEQLKQERNAWQERLRSLLGK 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333334444444333333334444333
No 333
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=38.71 E-value=6.5e+02 Score=28.75 Aligned_cols=87 Identities=14% Similarity=0.220 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccCCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 496 DLRSKLDTASALLLDLKAELSAYMESKLKEESNEEGHSNGELEEPERKTHTDIQAAVASAKKELEEVKLNIEKATAEVNC 575 (910)
Q Consensus 496 dLeakLeea~~~Le~Lk~ELa~~lE~kL~e~~~ei~~lq~~L~E~ek~~~~~l~esL~sakkELee~K~~Leka~eEl~s 575 (910)
.++.++..+..-|..|-+|++..+|.--+ .+ ..+-..|+++..+...+...|..++.....
T Consensus 238 nIe~~~~~~~~~Ldklh~eit~~LEkI~S---------------RE----K~lNnqL~~l~q~fr~a~~~lse~~e~y~q 298 (384)
T KOG0972|consen 238 NIEQKVGNVGPYLDKLHKEITKALEKIAS---------------RE----KSLNNQLASLMQKFRRATDTLSELREKYKQ 298 (384)
T ss_pred HHHHhhcchhHHHHHHHHHHHHHHHHHHH---------------HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777788888899999999984211 11 222333455555666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 576 LKVAATSLQSELEREKSALAAIRQRE 601 (910)
Q Consensus 576 L~~~vesLrsELek~K~ELeelKeke 601 (910)
+..-+.+-...|..+..+++.+++..
T Consensus 299 ~~~gv~~rT~~L~eVm~e~E~~Kqem 324 (384)
T KOG0972|consen 299 ASVGVSSRTETLDEVMDEIEQLKQEM 324 (384)
T ss_pred hcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666666665543
No 334
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=38.58 E-value=7.9e+02 Score=29.74 Aligned_cols=114 Identities=19% Similarity=0.272 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 327 LVEELKLNLERAQTEEHQAKQDSELAKLRVEEMEQGIADDASVAARAQLEVAKARHVAAVSELKSVKDEVESLRKDYASL 406 (910)
Q Consensus 327 ~ieeL~~kLE~a~~e~~~A~e~sE~ak~r~~ELEqgia~~~~~a~k~eLE~ar~q~a~~laEL~svKeELekLrqEl~~l 406 (910)
.|..|+.+++.+-..+=.-+-..--....++-|+.. .+..|..|.-.|..-..+.-+|+..|..--.|+..|-.-
T Consensus 363 iinkLk~niEeLIedKY~viLEKnd~~k~lqnLqe~-----la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry~~e 437 (527)
T PF15066_consen 363 IINKLKENIEELIEDKYRVILEKNDIEKTLQNLQEA-----LANTQKHLQESRNEKETLQLELKKIKANYVHLQERYMTE 437 (527)
T ss_pred HHHHHHHHHHHHHHhHhHhhhhhhhHHHHHHHHHHH-----HHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 455666666666555444433333333333333322 244577888888888899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 407 VTEKDIAVKKAEEAISASKEVEKTVEELTIELIATKESLESAH 449 (910)
Q Consensus 407 ~eeK~~A~k~AeEA~~aak~~eekveeLt~EL~~lKEsLe~a~ 449 (910)
+.+|+..+.+.-++.+.+-.-++.|+.|+. +|+.|+.+.
T Consensus 438 iQqKnksvsqclEmdk~LskKeeeverLQ~----lkgelEkat 476 (527)
T PF15066_consen 438 IQQKNKSVSQCLEMDKTLSKKEEEVERLQQ----LKGELEKAT 476 (527)
T ss_pred HHHhhhHHHHHHHHHHHhhhhHHHHHHHHH----HHHHHHHHH
Confidence 999999999999999998888888887764 444444433
No 335
>COG3524 KpsE Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=38.55 E-value=6.7e+02 Score=28.87 Aligned_cols=50 Identities=22% Similarity=0.361 Sum_probs=29.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 546 TDIQAAVASAKKELEEVKLNIEKATAEVNCLKVAATSLQSELEREKSALA 595 (910)
Q Consensus 546 ~~l~esL~sakkELee~K~~Leka~eEl~sL~~~vesLrsELek~K~ELe 595 (910)
..++..|......|+.++.......-++-.|.+.+++|+.+|...+..+.
T Consensus 226 s~Le~eL~~iqaqL~tvks~m~~~nPqi~~LkarieSlrkql~qe~q~is 275 (372)
T COG3524 226 SKLEDELIVIQAQLDTVKSVMNPENPQIPGLKARIESLRKQLLQEKQAIS 275 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHhc
Confidence 34444455555555555555544455667777777777777766665544
No 336
>PRK09343 prefoldin subunit beta; Provisional
Probab=38.39 E-value=3.9e+02 Score=26.14 Aligned_cols=33 Identities=15% Similarity=0.202 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHH
Q 002541 586 ELEREKSALAAIRQREGMASVAVASLEAELDRT 618 (910)
Q Consensus 586 ELek~K~ELeelKeke~~a~~eI~sL~eELer~ 618 (910)
+|...-..+..++.+.......+..|..+++..
T Consensus 8 ~~q~~~~~~q~lq~~l~~~~~q~~~le~q~~e~ 40 (121)
T PRK09343 8 EVQAQLAQLQQLQQQLERLLQQKSQIDLELREI 40 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444443
No 337
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=38.15 E-value=3.7e+02 Score=25.77 Aligned_cols=33 Identities=30% Similarity=0.387 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHH
Q 002541 654 KSLAQAAGEELHKAKEEAEQAKAGASTIESRLT 686 (910)
Q Consensus 654 Kkeae~ae~EL~~lkeEaE~aKaeI~taE~rL~ 686 (910)
.+.......++..+..++..++..+..++..|.
T Consensus 73 ~k~~~~k~~ei~~l~~~l~~l~~~~~k~e~~l~ 105 (126)
T PF13863_consen 73 KKKKEEKEAEIKKLKAELEELKSEISKLEEKLE 105 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444445555555555555544444443
No 338
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=37.86 E-value=4.8e+02 Score=27.00 Aligned_cols=9 Identities=33% Similarity=0.685 Sum_probs=3.6
Q ss_pred HHHHHHHHH
Q 002541 507 LLLDLKAEL 515 (910)
Q Consensus 507 ~Le~Lk~EL 515 (910)
.+..||.|+
T Consensus 59 ~~~eLr~el 67 (177)
T PF07798_consen 59 AIAELRSEL 67 (177)
T ss_pred HHHHHHHHH
Confidence 334444433
No 339
>PF15294 Leu_zip: Leucine zipper
Probab=36.94 E-value=6.7e+02 Score=28.38 Aligned_cols=45 Identities=22% Similarity=0.313 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 394 DEVESLRKDYASLVTEKDIAVKKAEEAISASKEVEKTVEELTIEL 438 (910)
Q Consensus 394 eELekLrqEl~~l~eeK~~A~k~AeEA~~aak~~eekveeLt~EL 438 (910)
.|+.+|+.|-..+.+---...+++-.+......+...+.+|+...
T Consensus 132 kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~~~ 176 (278)
T PF15294_consen 132 KEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQDEQ 176 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333344444455555555555433
No 340
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=36.92 E-value=1.2e+02 Score=26.08 Aligned_cols=35 Identities=11% Similarity=0.216 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 567 EKATAEVNCLKVAATSLQSELEREKSALAAIRQRE 601 (910)
Q Consensus 567 eka~eEl~sL~~~vesLrsELek~K~ELeelKeke 601 (910)
.....++..+...+..++.+++..+.+++.+.+..
T Consensus 3 ~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~env 37 (55)
T PF05377_consen 3 DELENELPRIESSINTVKKENEEISESVEKIEENV 37 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555556666666666666665555544
No 341
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=36.64 E-value=3.4e+02 Score=24.95 Aligned_cols=48 Identities=10% Similarity=0.181 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHH
Q 002541 579 AATSLQSELEREKSALAAIRQREGMASVAVASLEAELDRTRSEIALVQ 626 (910)
Q Consensus 579 ~vesLrsELek~K~ELeelKeke~~a~~eI~sL~eELer~ksELe~~k 626 (910)
.++.+|.|++.+-.++...+.........+.+-..|+..++..+-.+.
T Consensus 5 lLd~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE 52 (79)
T PF08581_consen 5 LLDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELE 52 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555555555555555555544443
No 342
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=36.36 E-value=1.2e+03 Score=31.06 Aligned_cols=14 Identities=21% Similarity=0.223 Sum_probs=5.6
Q ss_pred cchHhhHHHHHHHH
Q 002541 729 LSLEEYYELSKRAH 742 (910)
Q Consensus 729 ls~eEy~~L~~ka~ 742 (910)
++..+...|...+.
T Consensus 774 ~~~~~~~~l~~~i~ 787 (1047)
T PRK10246 774 LDEETLTQLEQLKQ 787 (1047)
T ss_pred CCHHHHHHHHHHHH
Confidence 33444444443333
No 343
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=35.82 E-value=3.6e+02 Score=24.97 Aligned_cols=53 Identities=19% Similarity=0.179 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002541 550 AAVASAKKELEEVKLNIEKATAEVNCLKVAATSLQSELEREKSALAAIRQREG 602 (910)
Q Consensus 550 esL~sakkELee~K~~Leka~eEl~sL~~~vesLrsELek~K~ELeelKeke~ 602 (910)
+.+..+++|++++|..-.....++..+...-+.|..+-.++|.++..-++++.
T Consensus 18 dtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr 70 (79)
T PRK15422 18 DTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQ 70 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666665566666655555555555555555555555554443
No 344
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=35.80 E-value=7.6e+02 Score=28.71 Aligned_cols=11 Identities=18% Similarity=0.712 Sum_probs=6.0
Q ss_pred HHHHHHHHHHH
Q 002541 806 QELRKWRAEHE 816 (910)
Q Consensus 806 ~ELRkwR~e~e 816 (910)
.-|..|+..=.
T Consensus 338 eGl~qW~~dL~ 348 (401)
T PF06785_consen 338 EGLAQWETDLQ 348 (401)
T ss_pred hhHHHHHHHHH
Confidence 44666665433
No 345
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=35.80 E-value=5.9e+02 Score=27.48 Aligned_cols=57 Identities=14% Similarity=0.234 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 002541 300 MPEYRKRSEAAEVAKNQVLKELDQTKRLVEELKLNLERAQTEEHQAKQDSELAKLRVEEM 359 (910)
Q Consensus 300 L~k~Keqle~aE~~k~qal~ELe~aKr~ieeL~~kLE~a~~e~~~A~e~sE~ak~r~~EL 359 (910)
|..|.... ...+..+......+.+....+..+|+++...=..++...|.++..+...
T Consensus 90 l~~~~~~~---~~~~K~~~~~~~k~qk~~~~~~~~l~KaKk~Y~~~C~e~e~a~~~~~~~ 146 (239)
T cd07647 90 LEEFREKQ---KEERKKTEDIMKRSQKNKKELYKKTMKAKKSYEQKCREKDKAEQAYEKS 146 (239)
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44444443 2334556667777777777777777777777777766666666555433
No 346
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=35.63 E-value=4.7e+02 Score=26.25 Aligned_cols=25 Identities=12% Similarity=0.154 Sum_probs=12.5
Q ss_pred HHHHHHHHHHhcHHHHHHHHHHHHH
Q 002541 666 KAKEEAEQAKAGASTIESRLTAARK 690 (910)
Q Consensus 666 ~lkeEaE~aKaeI~taE~rL~aA~K 690 (910)
.++.|.+.+=.-+.+.+.++...+.
T Consensus 81 ~~q~EldDLL~ll~Dle~K~~kyk~ 105 (136)
T PF04871_consen 81 EAQSELDDLLVLLGDLEEKRKKYKE 105 (136)
T ss_pred hhhhhHHHHHHHHHhHHHHHHHHHH
Confidence 3444555555555555555544433
No 347
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=35.38 E-value=6.6e+02 Score=27.89 Aligned_cols=39 Identities=21% Similarity=0.316 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 561 EVKLNIEKATAEVNCLKVAATSLQSELEREKSALAAIRQ 599 (910)
Q Consensus 561 e~K~~Leka~eEl~sL~~~vesLrsELek~K~ELeelKe 599 (910)
.++..+.....++..++.....+..++...+..++..+.
T Consensus 84 ~a~a~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~a~~ 122 (334)
T TIGR00998 84 KAEANLAALVRQTKQLEITVQQLQAKVESLKIKLEQARE 122 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333344444444444444333
No 348
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=34.60 E-value=8.7e+02 Score=29.02 Aligned_cols=15 Identities=33% Similarity=0.459 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHH
Q 002541 501 LDTASALLLDLKAEL 515 (910)
Q Consensus 501 Leea~~~Le~Lk~EL 515 (910)
+.+.+.++.+|+.+|
T Consensus 8 ~s~~dqr~~~~~~~l 22 (459)
T KOG0288|consen 8 KSENDQRLIDLNTEL 22 (459)
T ss_pred hhhhhhHHHHHHHHH
Confidence 444555666666555
No 349
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=34.51 E-value=3.4e+02 Score=32.73 Aligned_cols=27 Identities=19% Similarity=0.366 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 552 VASAKKELEEVKLNIEKATAEVNCLKV 578 (910)
Q Consensus 552 L~sakkELee~K~~Leka~eEl~sL~~ 578 (910)
+..++.+|..++..+..+.+++..++.
T Consensus 73 ~~~l~~~l~~l~~~~~~~~~~~~~~~~ 99 (525)
T TIGR02231 73 LAELRKQIRELEAELRDLEDRGDALKA 99 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444443
No 350
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=34.47 E-value=1.1e+03 Score=30.29 Aligned_cols=52 Identities=17% Similarity=0.194 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHH
Q 002541 571 AEVNCLKVAATSLQSELEREKSALAAIRQREGMASVAVASLEAELDRTRSEI 622 (910)
Q Consensus 571 eEl~sL~~~vesLrsELek~K~ELeelKeke~~a~~eI~sL~eELer~ksEL 622 (910)
=|+.+|+..--+|...|...-..++.++.+-.+....++++.+|-.++...+
T Consensus 427 ~El~sLqSlN~~Lq~ql~es~k~~e~lq~kneellk~~e~q~~Enk~~~~~~ 478 (861)
T PF15254_consen 427 LELFSLQSLNMSLQNQLQESLKSQELLQSKNEELLKVIENQKEENKRLRKMF 478 (861)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3788888888889999999999999998888888888888888888886654
No 351
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=34.26 E-value=3e+02 Score=33.91 Aligned_cols=38 Identities=26% Similarity=0.359 Sum_probs=18.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 002541 640 PKQLQVAAQEADQAKSLAQAAGEELHKAKEEAEQAKAG 677 (910)
Q Consensus 640 ~~eLqqls~EaEeAKkeae~ae~EL~~lkeEaE~aKae 677 (910)
+..+.+...++++++.+.......+..++.+....+..
T Consensus 211 p~~i~~~~~e~d~lk~e~~~~~~~i~~~~~~l~~~~~~ 248 (555)
T TIGR03545 211 PLELQKIKEEFDKLKKEGKADKQKIKSAKNDLQNDKKQ 248 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 34444555555555555555555555555554444433
No 352
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=33.53 E-value=2.9e+02 Score=28.51 Aligned_cols=62 Identities=8% Similarity=0.130 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHH
Q 002541 559 LEEVKLNIEKATAEVNCLKVAATSLQSELEREKSALAAIRQREGMASVAVASLEAELDRTRS 620 (910)
Q Consensus 559 Lee~K~~Leka~eEl~sL~~~vesLrsELek~K~ELeelKeke~~a~~eI~sL~eELer~ks 620 (910)
|+.....+....+++..+...+...+.-+...+.+|+.+..+..+....+..+..+++-.++
T Consensus 46 id~imer~~~ieNdlg~~~~~~~g~kk~~~~~~eelerLe~~iKdl~~lye~Vs~d~Npf~s 107 (157)
T COG3352 46 IDAIMERMTDIENDLGKVKIEIEGQKKQLQDIKEELERLEENIKDLVSLYELVSRDFNPFMS 107 (157)
T ss_pred HHHHHHHHHHHHhhcccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHh
Confidence 34444555555555555555555555555555555555555555555555544444444444
No 353
>PHA03011 hypothetical protein; Provisional
Probab=33.51 E-value=3.2e+02 Score=26.39 Aligned_cols=56 Identities=14% Similarity=0.252 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 391 SVKDEVESLRKDYASLVTEKDIAVKKAEEAISASKEVEKTVEELTIELIATKESLE 446 (910)
Q Consensus 391 svKeELekLrqEl~~l~eeK~~A~k~AeEA~~aak~~eekveeLt~EL~~lKEsLe 446 (910)
..++.|+.|..+|..+.++=..............+.+...+--|++++..+|+.+.
T Consensus 61 ai~e~ldeL~~qYN~L~dEYn~i~Ne~k~~~~iIQdn~d~I~~LraeIDkLK~nia 116 (120)
T PHA03011 61 AIIEILDELIAQYNELLDEYNLIENEIKDLEIIIQDNDDEIHFLRAEIDKLKENIA 116 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHh
Confidence 45566666666666777766666666677777788888889999999999988654
No 354
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=33.22 E-value=88 Score=36.33 Aligned_cols=12 Identities=8% Similarity=0.274 Sum_probs=5.9
Q ss_pred hhhccccccccc
Q 002541 838 LEEKKDSKKYDR 849 (910)
Q Consensus 838 ~~~~~~~~~~~~ 849 (910)
|--.|.++.|+.
T Consensus 323 i~~~G~~~~F~~ 334 (370)
T PF02994_consen 323 ITYNGKTKSFTD 334 (370)
T ss_dssp EESSSSEEEESS
T ss_pred ceeCCceecCCC
Confidence 344455555553
No 355
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=33.11 E-value=3.5e+02 Score=33.29 Aligned_cols=67 Identities=18% Similarity=0.324 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHH
Q 002541 559 LEEVKLNIEKATAEVNCLKVAATSLQSELEREKSALAAIRQREGMASVAVASLEAELDRTRSEIALV 625 (910)
Q Consensus 559 Lee~K~~Leka~eEl~sL~~~vesLrsELek~K~ELeelKeke~~a~~eI~sL~eELer~ksELe~~ 625 (910)
+.+.+.-+..+..|+..++.+-..|.+++++.+.-+++++..+-..+.+...|..+++.++..++++
T Consensus 81 ~~e~~RI~~sVs~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El 147 (907)
T KOG2264|consen 81 LREQKRILASVSLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEEL 147 (907)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHH
Confidence 5556666667777777777777777777777666666666655555555555555555544444443
No 356
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=32.90 E-value=6.2e+02 Score=28.87 Aligned_cols=30 Identities=7% Similarity=0.241 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 372 RAQLEVAKARHVAAVSELKSVKDEVESLRK 401 (910)
Q Consensus 372 k~eLE~ar~q~a~~laEL~svKeELekLrq 401 (910)
+.+++.++.++...-+++..++.+|..++.
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 172 (370)
T PRK11578 143 QQDLDTAATELAVKQAQIGTIDAQIKRNQA 172 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555554444444444444443333
No 357
>PRK05689 fliJ flagellar biosynthesis chaperone; Validated
Probab=32.89 E-value=4.9e+02 Score=25.69 Aligned_cols=88 Identities=14% Similarity=0.147 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 374 QLEVAKARHVAAVSELKSVKDEVESLR---KDYASLVTEKD---IAVKKAEEAISASKEVEKTVEELTIELIATKESLES 447 (910)
Q Consensus 374 eLE~ar~q~a~~laEL~svKeELekLr---qEl~~l~eeK~---~A~k~AeEA~~aak~~eekveeLt~EL~~lKEsLe~ 447 (910)
+.+.+...++.+...+......|..|. .+|..-..... ...........=...+...+......+..++..++.
T Consensus 17 ~ee~a~~~la~a~~~~~~~~~~L~~L~~y~~~y~~~~~~~~~~g~~~~~l~~~~~fi~~L~~~I~~q~~~v~~~~~~ve~ 96 (147)
T PRK05689 17 AEEQAALQLGQARQELQQAEQQLKMLEDYRLEYRQQLNDRGSAGMTSSWWINYQQFLQQLEKAITQQRQQLTQWTQKVDN 96 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555567777777777777777763 33333222221 111222222223445555555556666666666666
Q ss_pred HHHHHHHHHHHHHH
Q 002541 448 AHAAHLEAEEQRIG 461 (910)
Q Consensus 448 a~aa~~eAEe~r~~ 461 (910)
......++...+..
T Consensus 97 ~r~~~~~a~~~~k~ 110 (147)
T PRK05689 97 ARKYWQEKKQRLEA 110 (147)
T ss_pred HHHHHHHHHHHHHH
Confidence 55555554444433
No 358
>PTZ00464 SNF-7-like protein; Provisional
Probab=32.81 E-value=6.6e+02 Score=27.13 Aligned_cols=18 Identities=22% Similarity=0.252 Sum_probs=10.3
Q ss_pred hhhHHHHHHHHHHHHHHH
Q 002541 469 DSHLWEKELKQAEEELQK 486 (910)
Q Consensus 469 d~~~~e~eL~qaEEEie~ 486 (910)
|-.+++.||...+.++..
T Consensus 158 DEdELe~ELe~Le~e~~~ 175 (211)
T PTZ00464 158 DEDEMLGELDALDFDMEK 175 (211)
T ss_pred CHHHHHHHHHHHHHHHhc
Confidence 344556666666666543
No 359
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []. COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].
Probab=32.80 E-value=1.2e+03 Score=30.00 Aligned_cols=60 Identities=25% Similarity=0.335 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 002541 568 KATAEVNCLKVAATSLQSELEREKSALAAIRQREGMASVAVASLEAELDRTRSEIALVQMKEKE 631 (910)
Q Consensus 568 ka~eEl~sL~~~vesLrsELek~K~ELeelKeke~~a~~eI~sL~eELer~ksELe~~kakeee 631 (910)
++--|+..++..+..|+..+..++.++..... .....+ ....+|..++..++.+..-..+
T Consensus 67 r~~~ev~~l~~ea~~L~~~~~~v~~~~~~~e~---~t~~s~-~~L~~ld~vK~rm~~a~~~L~E 126 (766)
T PF10191_consen 67 RVLREVDRLRQEAASLQEQMASVQEEIKAVEQ---DTAQSM-AQLAELDSVKSRMEAARETLQE 126 (766)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc---cHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555555555543311 111122 2345566666666666554443
No 360
>PRK10698 phage shock protein PspA; Provisional
Probab=32.79 E-value=6.6e+02 Score=27.13 Aligned_cols=48 Identities=10% Similarity=0.064 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHH
Q 002541 571 AEVNCLKVAATSLQSELEREKSALAAIRQREGMASVAVASLEAELDRT 618 (910)
Q Consensus 571 eEl~sL~~~vesLrsELek~K~ELeelKeke~~a~~eI~sL~eELer~ 618 (910)
+=...|+-.+..++..|..++..+..+..........+..+.......
T Consensus 24 DP~k~l~q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~ 71 (222)
T PRK10698 24 DPQKLVRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEW 71 (222)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333345555555556666666666555555555554444444444433
No 361
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=32.78 E-value=4.2e+02 Score=24.84 Aligned_cols=16 Identities=19% Similarity=0.293 Sum_probs=6.1
Q ss_pred hHHHHHHHHHHHHHHH
Q 002541 610 SLEAELDRTRSEIALV 625 (910)
Q Consensus 610 sL~eELer~ksELe~~ 625 (910)
.|..+.+.+..+++.+
T Consensus 33 ~ld~~~r~l~~~~e~l 48 (108)
T PF02403_consen 33 ELDQERRELQQELEEL 48 (108)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 362
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=32.62 E-value=9.5e+02 Score=28.87 Aligned_cols=33 Identities=27% Similarity=0.504 Sum_probs=16.8
Q ss_pred HHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 002541 355 RVEEMEQGIADDASVAARAQLEVAKARHVAAVSELK 390 (910)
Q Consensus 355 r~~ELEqgia~~~~~a~k~eLE~ar~q~a~~laEL~ 390 (910)
|+.++..|..+.. .+.+||..|.+...+-.||.
T Consensus 294 rl~elreg~e~e~---~rkelE~lR~~L~kAEkele 326 (575)
T KOG4403|consen 294 RLSELREGVENET---SRKELEQLRVALEKAEKELE 326 (575)
T ss_pred hhhhhhcchhHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 4444444443322 22466666666666665555
No 363
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=32.49 E-value=8.5e+02 Score=28.32 Aligned_cols=61 Identities=20% Similarity=0.279 Sum_probs=33.8
Q ss_pred HHHHHHHHHHh--hhhhh---------hhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 351 LAKLRVEEMEQ--GIADD---------ASVAARAQLEVAKARHVAA-VSELKSVKDEVESLRKDYASLVTEKD 411 (910)
Q Consensus 351 ~ak~r~~ELEq--gia~~---------~~~a~k~eLE~ar~q~a~~-laEL~svKeELekLrqEl~~l~eeK~ 411 (910)
....|+..||. |+... ....+-.-|+....+...+ -..|+.+..-|..|..+++.+...|.
T Consensus 213 ~LE~RL~~LE~~lG~~~~~~~~l~~~~~~~~l~~~l~~L~~~lslL~~~~Ld~i~~rl~~L~~~~~~l~~~~~ 285 (388)
T PF04912_consen 213 DLEKRLARLESALGIDSDKMSSLDSDTSSSPLLPALNELERQLSLLDPAKLDSIERRLKSLLSELEELAEKRK 285 (388)
T ss_pred HHHHHHHHHHHHhCCCccccccccccCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 34556777776 44111 1123334444444444433 34677888888888888877665544
No 364
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=32.15 E-value=9.5e+02 Score=28.76 Aligned_cols=31 Identities=13% Similarity=0.123 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 423 ASKEVEKTVEELTIELIATKESLESAHAAHL 453 (910)
Q Consensus 423 aak~~eekveeLt~EL~~lKEsLe~a~aa~~ 453 (910)
-...-+..+.+|..-|..+.+-+...+..+.
T Consensus 297 fL~lQedL~~DL~dDL~ka~eTf~lVeq~~~ 327 (426)
T smart00806 297 FLTLQEDLIADLKEDLEKAEETFDLVEQCCE 327 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666666666666666666665543
No 365
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=31.35 E-value=4.5e+02 Score=24.69 Aligned_cols=21 Identities=10% Similarity=0.139 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 002541 571 AEVNCLKVAATSLQSELEREK 591 (910)
Q Consensus 571 eEl~sL~~~vesLrsELek~K 591 (910)
.+...+....++|..++..++
T Consensus 45 qkyfa~mr~~d~l~~e~k~L~ 65 (96)
T PF08647_consen 45 QKYFAAMRSKDALDNEMKKLN 65 (96)
T ss_pred HHHHHHHHhHHHHHHHHHHHH
Confidence 333333333333333333333
No 366
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=31.18 E-value=9.9e+02 Score=28.68 Aligned_cols=8 Identities=25% Similarity=0.584 Sum_probs=3.9
Q ss_pred CCCCcccc
Q 002541 33 PVTNGKVS 40 (910)
Q Consensus 33 ~~~~~~~~ 40 (910)
.+++|.+-
T Consensus 29 s~adglla 36 (502)
T KOG0982|consen 29 SVADGLLA 36 (502)
T ss_pred Ccccchhh
Confidence 34555544
No 367
>PF12001 DUF3496: Domain of unknown function (DUF3496); InterPro: IPR021885 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 110 amino acids in length.
Probab=31.06 E-value=2.8e+02 Score=27.22 Aligned_cols=54 Identities=20% Similarity=0.263 Sum_probs=37.6
Q ss_pred HHHhHHHHHHHHHHH--------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 283 VERRKYVEQELERSH--------EEMPEYRKRSEAAEVAKNQVLKELDQTKRLVEELKLNLE 336 (910)
Q Consensus 283 ~ER~~~~e~EL~~~q--------eeL~k~Keqle~aE~~k~qal~ELe~aKr~ieeL~~kLE 336 (910)
--|...++.||.+++ -+|.+||+.-...-.....+-.+|.++..-+.+...+|-
T Consensus 6 ElrIkdLeselsk~Ktsq~d~~~~eLEkYkqly~eElk~r~SLs~kL~ktnerLaevstkLl 67 (111)
T PF12001_consen 6 ELRIKDLESELSKMKTSQEDSNKTELEKYKQLYLEELKLRKSLSNKLNKTNERLAEVSTKLL 67 (111)
T ss_pred HHHHHHHHHHHHHhHhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 345666777776655 567788877776666666777777777777777776663
No 368
>PHA03247 large tegument protein UL36; Provisional
Probab=30.90 E-value=2e+03 Score=32.24 Aligned_cols=59 Identities=36% Similarity=0.349 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHH-HH---HHHHHHHHHHHhhh
Q 002541 653 AKSLAQAAGEELHKAKEEAEQAKAGASTIESRLTAARKEIEAA-RA---SEKLALAAIKALQE 711 (910)
Q Consensus 653 AKkeae~ae~EL~~lkeEaE~aKaeI~taE~rL~aA~KElEAA-KA---sEa~Ala~ikaL~e 711 (910)
++-.+...+..+..++.++.+++....++..|....++|+-++ ++ .+..-|+.||.|.-
T Consensus 1565 ~e~~~~~~rrDl~~ak~al~~a~~~r~eat~Ra~~~L~evv~a~~a~~r~~a~~LaNLKnLLR 1627 (3151)
T PHA03247 1565 AEYVAFVARRDLAEAKDALVRAKQQRAEATDRVTAALREALAAHERRAQSEAESLANLKTLLR 1627 (3151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 4455667789999999999999999999999988888888333 33 34467788888773
No 369
>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed
Probab=30.76 E-value=2.2e+02 Score=32.68 Aligned_cols=31 Identities=19% Similarity=0.136 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 372 RAQLEVAKARHVAAVSELKSVKDEVESLRKD 402 (910)
Q Consensus 372 k~eLE~ar~q~a~~laEL~svKeELekLrqE 402 (910)
+.+++.++.+|..+-++|.+++..|...+..
T Consensus 138 ~~~~~~~~~~~~~a~a~~~~a~a~l~~a~~~ 168 (385)
T PRK09578 138 ERDYTEAVADERQAKAAVASAKAELARAQLQ 168 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5667777766766666666666655554443
No 370
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=30.74 E-value=92 Score=36.16 Aligned_cols=7 Identities=14% Similarity=0.472 Sum_probs=2.2
Q ss_pred CCCcccc
Q 002541 723 SPTGVTL 729 (910)
Q Consensus 723 ~~~~Itl 729 (910)
.+..|.+
T Consensus 248 ~PR~iIv 254 (370)
T PF02994_consen 248 RPRPIIV 254 (370)
T ss_dssp S--EEEE
T ss_pred CcCeEEE
Confidence 3444543
No 371
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=30.62 E-value=2.5e+02 Score=26.27 Aligned_cols=27 Identities=30% Similarity=0.454 Sum_probs=22.2
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 002541 289 VEQELERSHEEMPEYRKRSEAAEVAKN 315 (910)
Q Consensus 289 ~e~EL~~~qeeL~k~Keqle~aE~~k~ 315 (910)
|..|++++.+.|..|+.+++..+....
T Consensus 3 V~~eId~lEekl~~cr~~le~ve~rL~ 29 (85)
T PF15188_consen 3 VAKEIDGLEEKLAQCRRRLEAVESRLR 29 (85)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHc
Confidence 467899999999999999998887543
No 372
>PRK15030 multidrug efflux system transporter AcrA; Provisional
Probab=30.57 E-value=2.4e+02 Score=32.68 Aligned_cols=31 Identities=23% Similarity=0.267 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 372 RAQLEVAKARHVAAVSELKSVKDEVESLRKD 402 (910)
Q Consensus 372 k~eLE~ar~q~a~~laEL~svKeELekLrqE 402 (910)
+.+++.++..|..+-+.+..++..|+..+..
T Consensus 140 ~~~~d~a~~~~~~a~a~~~~a~a~l~~a~~~ 170 (397)
T PRK15030 140 KQEYDQALADAQQANAAVTAAKAAVETARIN 170 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567777766666666666666655554433
No 373
>KOG3156 consensus Uncharacterized membrane protein [Function unknown]
Probab=30.52 E-value=5e+02 Score=28.24 Aligned_cols=36 Identities=19% Similarity=0.340 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q 002541 564 LNIEKATAEVNCLKV-AATSLQSELEREKSALAAIRQ 599 (910)
Q Consensus 564 ~~Leka~eEl~sL~~-~vesLrsELek~K~ELeelKe 599 (910)
..+.+...++.++.. .+.-|+.|-++++.+|+++|.
T Consensus 101 ~~f~kiRsel~S~e~sEF~~lr~e~EklkndlEk~ks 137 (220)
T KOG3156|consen 101 VDFAKIRSELVSIERSEFANLRAENEKLKNDLEKLKS 137 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444433332 444555555555555555544
No 374
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=30.36 E-value=5.1e+02 Score=31.95 Aligned_cols=11 Identities=9% Similarity=0.247 Sum_probs=4.7
Q ss_pred HHHHHHHHHHH
Q 002541 768 RSLERLEEVNK 778 (910)
Q Consensus 768 ~~l~Kle~~~~ 778 (910)
..+..++.++.
T Consensus 296 ~~~~~y~~~~p 306 (555)
T TIGR03545 296 KFLKYYDQAEP 306 (555)
T ss_pred HHHHHHHHHhH
Confidence 33444444443
No 375
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=29.80 E-value=6.2e+02 Score=28.01 Aligned_cols=16 Identities=31% Similarity=0.395 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 002541 326 RLVEELKLNLERAQTE 341 (910)
Q Consensus 326 r~ieeL~~kLE~a~~e 341 (910)
+.+--++++||++.-+
T Consensus 186 ~qv~~in~qlErLRL~ 201 (289)
T COG4985 186 QQVRVINSQLERLRLE 201 (289)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455566666666554
No 376
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=29.78 E-value=4.5e+02 Score=25.13 Aligned_cols=19 Identities=16% Similarity=0.223 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 002541 584 QSELEREKSALAAIRQREG 602 (910)
Q Consensus 584 rsELek~K~ELeelKeke~ 602 (910)
+.++..++-.+..++.+..
T Consensus 64 ~~dv~~L~l~l~el~G~~~ 82 (106)
T PF10805_consen 64 RDDVHDLQLELAELRGELK 82 (106)
T ss_pred HHHHHHHHHHHHHHHhHHH
Confidence 3333333333333333333
No 377
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=29.35 E-value=4.6e+02 Score=25.16 Aligned_cols=51 Identities=22% Similarity=0.322 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhHHHHHHHHHHHHhhhh
Q 002541 314 KNQVLKELDQTKRLVEELKLNL-ERAQTEEHQAKQDSELAKLRVEEMEQGIA 364 (910)
Q Consensus 314 k~qal~ELe~aKr~ieeL~~kL-E~a~~e~~~A~e~sE~ak~r~~ELEqgia 364 (910)
+..+..+.......+++|+..| +.++.=...|......++.+...|+..+.
T Consensus 10 r~~ae~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~k~~~le~~l~ 61 (100)
T PF06428_consen 10 REEAEQEKEQIESELEELTASLFEEANKMVADARRERAALEEKNEQLEKQLK 61 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555556666777888888 78877777777666677777777776444
No 378
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=29.31 E-value=7.3e+02 Score=26.54 Aligned_cols=51 Identities=22% Similarity=0.236 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHH
Q 002541 576 LKVAATSLQSELEREKSALAAIRQREGMASVAVASLEAELDRTRSEIALVQ 626 (910)
Q Consensus 576 L~~~vesLrsELek~K~ELeelKeke~~a~~eI~sL~eELer~ksELe~~k 626 (910)
.......|....+..|...+...++-.....+..+|...++.++.++...+
T Consensus 93 ~~qk~~tl~e~~en~K~~~e~tEer~~el~kklnslkk~~e~lr~el~k~~ 143 (203)
T KOG3433|consen 93 GSQKKATLGESIENRKAGREETEERTDELTKKLNSLKKILESLRWELAKIQ 143 (203)
T ss_pred hhhhHhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333334444556666666666666555555555666665555555554443
No 379
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=29.15 E-value=1.2e+03 Score=28.79 Aligned_cols=97 Identities=14% Similarity=0.201 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH
Q 002541 303 YRKRSEAAEVAKNQVLKELDQTKRLVEELKLNLERAQTEEHQAKQDSELAKLRVEEMEQGIADDASVAARAQLEVAKARH 382 (910)
Q Consensus 303 ~Keqle~aE~~k~qal~ELe~aKr~ieeL~~kLE~a~~e~~~A~e~sE~ak~r~~ELEqgia~~~~~a~k~eLE~ar~q~ 382 (910)
|..++...-..+..+....-.....-+.|...|+.+..++..-.+....+..++.-||.++.-.... -..||...-+..
T Consensus 418 Y~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr~N-YE~QLs~MSEHL 496 (518)
T PF10212_consen 418 YMSRIEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDELETTRRN-YEEQLSMMSEHL 496 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 002541 383 VAAVSELKSVKDEVESLR 400 (910)
Q Consensus 383 a~~laEL~svKeELekLr 400 (910)
+..-..|..-.+||+.|+
T Consensus 497 asmNeqL~~Q~eeI~~LK 514 (518)
T PF10212_consen 497 ASMNEQLAKQREEIQTLK 514 (518)
T ss_pred HHHHHHHHHHHHHHHHHh
No 380
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=28.90 E-value=3.1e+02 Score=28.53 Aligned_cols=18 Identities=28% Similarity=0.425 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 002541 583 LQSELEREKSALAAIRQR 600 (910)
Q Consensus 583 LrsELek~K~ELeelKek 600 (910)
+-.++...++.++.++.+
T Consensus 123 li~~l~~~~~~~~~~~kq 140 (192)
T PF05529_consen 123 LIKELIKLEEKLEALKKQ 140 (192)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444443
No 381
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=28.87 E-value=8.2e+02 Score=27.00 Aligned_cols=53 Identities=23% Similarity=0.399 Sum_probs=38.0
Q ss_pred hhHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 733 EYYELSKRAHEAEEQANMRVVAAISQIEVAKASELRSLERLEEVNKEIATRKE 785 (910)
Q Consensus 733 Ey~~L~~ka~Eaee~a~kKVa~A~aQvEeAkese~~~l~Kle~~~~Eie~~k~ 785 (910)
-|+.+..+....-+....+|.....+|..+|..=..+|..|+.+..+|-+.|.
T Consensus 174 PYfe~K~~~~~~l~~~k~~v~~Le~~v~~aK~~Y~~ALrnLE~ISeeIH~~R~ 226 (239)
T PF05276_consen 174 PYFELKAKFNQQLEEQKEKVEELEAKVKQAKSRYSEALRNLEQISEEIHEQRR 226 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46666665555555567788888888888888888888888888877766554
No 382
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=28.37 E-value=5.8e+02 Score=25.10 Aligned_cols=34 Identities=12% Similarity=0.163 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHH
Q 002541 655 SLAQAAGEELHKAKEEAEQAKAGASTIESRLTAA 688 (910)
Q Consensus 655 keae~ae~EL~~lkeEaE~aKaeI~taE~rL~aA 688 (910)
++...+...+..+...+...+..+..+...+..+
T Consensus 101 ~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l 134 (140)
T PRK03947 101 KRKEELEKALEKLEEALQKLASRIAQLAQELQQL 134 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444443
No 383
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=28.19 E-value=4.2e+02 Score=25.36 Aligned_cols=49 Identities=18% Similarity=0.212 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 002541 560 EEVKLNIEKATAEVNCL--KVAATSLQSELEREKSALAAIRQREGMASVAV 608 (910)
Q Consensus 560 ee~K~~Leka~eEl~sL--~~~vesLrsELek~K~ELeelKeke~~a~~eI 608 (910)
......+..+..++..+ +..+..|+-+|..++.++..+..+........
T Consensus 45 ~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~ 95 (106)
T PF10805_consen 45 DEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQL 95 (106)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 33344444444444444 44444444444444444444444444433333
No 384
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=28.09 E-value=6.4e+02 Score=25.51 Aligned_cols=7 Identities=14% Similarity=0.563 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 002541 614 ELDRTRS 620 (910)
Q Consensus 614 ELer~ks 620 (910)
.+++++.
T Consensus 83 ~i~rL~~ 89 (135)
T TIGR03495 83 RIERLKR 89 (135)
T ss_pred HHHHHHH
Confidence 3333333
No 385
>PF15556 Zwint: ZW10 interactor
Probab=27.73 E-value=8.2e+02 Score=26.58 Aligned_cols=56 Identities=23% Similarity=0.316 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 002541 300 MPEYRKRSEAAEVAKNQVLKELDQTKRLVEELKLNLERAQTEEHQAKQDSELAKLR 355 (910)
Q Consensus 300 L~k~Keqle~aE~~k~qal~ELe~aKr~ieeL~~kLE~a~~e~~~A~e~sE~ak~r 355 (910)
-+.|.++.+....+..+++-.++++.|.--.|..-|+.++..+..|++-..+|+.+
T Consensus 72 KAtYqehVEaIk~alt~aL~q~eEaqrK~~qLqeA~eqlqaKKqva~eK~r~AQkq 127 (252)
T PF15556_consen 72 KATYQEHVEAIKSALTQALPQVEEAQRKRTQLQEALEQLQAKKQVAMEKLRAAQKQ 127 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35799999999999999999999999999899888998888887777666555544
No 386
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=27.64 E-value=5.2e+02 Score=24.24 Aligned_cols=65 Identities=23% Similarity=0.321 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 383 VAAVSELKSVKDEVESLRKDYASLVTEKDIAVKKAEEAISA---SKEVEKTVEELTIELIATKESLES 447 (910)
Q Consensus 383 a~~laEL~svKeELekLrqEl~~l~eeK~~A~k~AeEA~~a---ak~~eekveeLt~EL~~lKEsLe~ 447 (910)
..++.++-..-++...++.+++.+...++..-+++..+... ...+-.++..+..+|..+...+..
T Consensus 25 ~~~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~ 92 (108)
T PF02403_consen 25 EEDVDEIIELDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKE 92 (108)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555556666667777777777777766666666554 334444444444444444443333
No 387
>PRK09859 multidrug efflux system protein MdtE; Provisional
Probab=27.15 E-value=2.8e+02 Score=31.88 Aligned_cols=31 Identities=19% Similarity=0.254 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 372 RAQLEVAKARHVAAVSELKSVKDEVESLRKD 402 (910)
Q Consensus 372 k~eLE~ar~q~a~~laEL~svKeELekLrqE 402 (910)
+.+++.++.+|..+-+.|..++..|..++..
T Consensus 136 ~~~~d~a~~~~~~a~a~~~~a~a~l~~a~~~ 166 (385)
T PRK09859 136 RQDYDTARTQLNEAEANVTVAKAAVEQATIN 166 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566777766766666666666666555443
No 388
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=26.69 E-value=4.3e+02 Score=22.99 Aligned_cols=28 Identities=18% Similarity=0.376 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 566 IEKATAEVNCLKVAATSLQSELEREKSA 593 (910)
Q Consensus 566 Leka~eEl~sL~~~vesLrsELek~K~E 593 (910)
+..+..++..|...+..|..++..++.+
T Consensus 5 id~Ls~dVq~L~~kvdqLs~dv~~lr~~ 32 (56)
T PF04728_consen 5 IDQLSSDVQTLNSKVDQLSSDVNALRAD 32 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444443333
No 389
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=26.53 E-value=4.7e+02 Score=27.17 Aligned_cols=30 Identities=27% Similarity=0.345 Sum_probs=15.2
Q ss_pred HhHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 002541 285 RRKYVEQELERSHEEMPEYRKRSEAAEVAK 314 (910)
Q Consensus 285 R~~~~e~EL~~~qeeL~k~Keqle~aE~~k 314 (910)
|...+-.+|...++.+...+.|...+....
T Consensus 119 r~~~li~~l~~~~~~~~~~~kq~~~~~~~~ 148 (192)
T PF05529_consen 119 RVHSLIKELIKLEEKLEALKKQAESASEAA 148 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 333444455555555555555555444333
No 390
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=26.33 E-value=1.8e+03 Score=30.18 Aligned_cols=48 Identities=8% Similarity=0.254 Sum_probs=28.6
Q ss_pred HhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 285 RRKYVEQELERSHEEMPEYRKRSEAAEVAKNQVLKELDQTKRLVEELK 332 (910)
Q Consensus 285 R~~~~e~EL~~~qeeL~k~Keqle~aE~~k~qal~ELe~aKr~ieeL~ 332 (910)
|...+..-++..+.-+..+|++....+.........+++....+.+|.
T Consensus 217 ~~e~~~l~i~~~~~ki~~~ke~v~e~e~e~~~~~~~i~ei~~~~~el~ 264 (1294)
T KOG0962|consen 217 RAEVLRLNIHSGQRKIEKSKEEVSELENELGPIEAKIEEIEKSLKELE 264 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 333444456667777777777777776666665555555555444443
No 391
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=26.28 E-value=4.6e+02 Score=26.84 Aligned_cols=62 Identities=16% Similarity=0.226 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 002541 548 IQAAVASAKKELEEVKLNIEKATAEVNCLKV---AATSLQSELEREKSALAAIRQREGMASVAVA 609 (910)
Q Consensus 548 l~esL~sakkELee~K~~Leka~eEl~sL~~---~vesLrsELek~K~ELeelKeke~~a~~eI~ 609 (910)
.+..+..+..+++.++.+|......|..|+. .++.|+.+++..+..................
T Consensus 18 ~K~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~~~~~~~e~~l~~~~ 82 (155)
T PF06810_consen 18 PKAKVDKVKEERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNKTAKEEYEAKLAQMK 82 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 392
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=26.11 E-value=8.4e+02 Score=26.17 Aligned_cols=12 Identities=17% Similarity=0.296 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHH
Q 002541 549 QAAVASAKKELE 560 (910)
Q Consensus 549 ~esL~sakkELe 560 (910)
..++..+..+.+
T Consensus 59 ~~a~~~i~~e~e 70 (236)
T cd07651 59 KNSLDTLRLETE 70 (236)
T ss_pred HHHHHHHHHHHH
Confidence 334444444443
No 393
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=25.90 E-value=7.5e+02 Score=25.57 Aligned_cols=24 Identities=38% Similarity=0.544 Sum_probs=17.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 758 QIEVAKASELRSLERLEEVNKEIA 781 (910)
Q Consensus 758 QvEeAkese~~~l~Kle~~~~Eie 781 (910)
-++-.-+|+..-++||+++.+.|+
T Consensus 135 L~eLv~eSE~~rmKKLEELsk~ie 158 (159)
T PF04949_consen 135 LMELVSESERLRMKKLEELSKEIE 158 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcc
Confidence 334556777788888888888654
No 394
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=25.74 E-value=97 Score=32.28 Aligned_cols=15 Identities=33% Similarity=0.510 Sum_probs=0.4
Q ss_pred HHhHHHHHHHHHHHH
Q 002541 608 VASLEAELDRTRSEI 622 (910)
Q Consensus 608 I~sL~eELer~ksEL 622 (910)
+++|.+|++.++.||
T Consensus 33 ~QRLkDE~RDLKqEl 47 (166)
T PF04880_consen 33 VQRLKDELRDLKQEL 47 (166)
T ss_dssp H--------------
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444444
No 395
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.38 E-value=5.2e+02 Score=23.50 Aligned_cols=49 Identities=22% Similarity=0.249 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 552 VASAKKELEEVKLNIEKATAEVNCLKVAATSLQSELEREKSALAAIRQR 600 (910)
Q Consensus 552 L~sakkELee~K~~Leka~eEl~sL~~~vesLrsELek~K~ELeelKek 600 (910)
+.-++.|++++|..-.....+...++...+.|..+-+.+|.+...-+++
T Consensus 20 I~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQer 68 (79)
T COG3074 20 ITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQER 68 (79)
T ss_pred HHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555555555555555555555554444444443
No 396
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=25.27 E-value=8.2e+02 Score=25.79 Aligned_cols=23 Identities=26% Similarity=0.485 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 002541 382 HVAAVSELKSVKDEVESLRKDYA 404 (910)
Q Consensus 382 ~a~~laEL~svKeELekLrqEl~ 404 (910)
....+.+|...+.++..|+.++.
T Consensus 105 R~~~l~~l~~l~~~~~~l~~el~ 127 (188)
T PF03962_consen 105 REELLEELEELKKELKELKKELE 127 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55577777777888888887776
No 397
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=25.13 E-value=2.5e+02 Score=33.85 Aligned_cols=40 Identities=13% Similarity=0.255 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHH
Q 002541 583 LQSELEREKSALAAIRQREGMASVAVASLEAELDRTRSEI 622 (910)
Q Consensus 583 LrsELek~K~ELeelKeke~~a~~eI~sL~eELer~ksEL 622 (910)
|..+|+.++.+++.+..+....+.+|..|..++..++.++
T Consensus 81 LEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 81 MQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444333333344444444445544444433
No 398
>cd07655 F-BAR_PACSIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce
Probab=25.09 E-value=9.4e+02 Score=26.39 Aligned_cols=34 Identities=9% Similarity=0.286 Sum_probs=15.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002541 677 GASTIESRLTAARKEIEAARASEKLALAAIKALQ 710 (910)
Q Consensus 677 eI~taE~rL~aA~KElEAAKAsEa~Ala~ikaL~ 710 (910)
++..++.++..+...+..++..=..++..+..+.
T Consensus 169 eleK~~~k~~k~~~~~~~~~~~Y~~~l~~~n~~~ 202 (258)
T cd07655 169 QVKKLQDKVEKCKQEVSKTKDKYEKALEDLNKYN 202 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3444444444444444444443344444444433
No 399
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=24.78 E-value=8e+02 Score=25.62 Aligned_cols=76 Identities=24% Similarity=0.306 Sum_probs=0.0
Q ss_pred HHHHHhhHHHHHHHHHHHH------------------------hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 342 EHQAKQDSELAKLRVEEME------------------------QGIADDASVAARAQLEVAKARHVAAVSELKSVKDEVE 397 (910)
Q Consensus 342 ~~~A~e~sE~ak~r~~ELE------------------------qgia~~~~~a~k~eLE~ar~q~a~~laEL~svKeELe 397 (910)
+.+...+.++||-+-++.- .........+++.++...+.++..+-.++...++++.
T Consensus 56 RkqY~~~i~~AKkqRk~~~~~~~~ltl~~vI~fLq~l~~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~ 135 (161)
T TIGR02894 56 RKQYEEAIELAKKQRKELKREAGSLTLQDVISFLQNLKTTNPSDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLS 135 (161)
T ss_pred HHHHHHHHHHHHHHHhccccCcccCCHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 002541 398 SLRKDYASLVTEKDIAVKKA 417 (910)
Q Consensus 398 kLrqEl~~l~eeK~~A~k~A 417 (910)
.++++|.+++.--+.|.+-+
T Consensus 136 ~~~eDY~~L~~Im~RARkl~ 155 (161)
T TIGR02894 136 TIEEDYQTLIDIMDRARKLA 155 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHH
No 400
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=24.73 E-value=1.9e+02 Score=30.05 Aligned_cols=27 Identities=30% Similarity=0.422 Sum_probs=21.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhH
Q 002541 468 QDSHLWEKELKQAEEELQKLTQQILSA 494 (910)
Q Consensus 468 qd~~~~e~eL~qaEEEie~Lr~el~~a 494 (910)
.+..+|..+|.+.++||.-|++-|.+.
T Consensus 29 eE~eeLr~EL~KvEeEI~TLrqvL~aK 55 (162)
T PF04201_consen 29 EEREELRSELAKVEEEIQTLRQVLAAK 55 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567889999999999998876543
No 401
>PF04645 DUF603: Protein of unknown function, DUF603; InterPro: IPR006739 This family includes several uncharacterised proteins from Borrelia species.
Probab=24.46 E-value=8.6e+02 Score=25.73 Aligned_cols=24 Identities=13% Similarity=0.127 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 641 KQLQVAAQEADQAKSLAQAAGEEL 664 (910)
Q Consensus 641 ~eLqqls~EaEeAKkeae~ae~EL 664 (910)
..++.+..|+.+..++.+..+.+|
T Consensus 138 ~~i~slk~EL~d~iKe~e~~emeL 161 (181)
T PF04645_consen 138 EEIESLKSELNDLIKEREIREMEL 161 (181)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555556555555555544443
No 402
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.27 E-value=9.9e+02 Score=26.37 Aligned_cols=14 Identities=36% Similarity=0.494 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHHh
Q 002541 663 ELHKAKEEAEQAKA 676 (910)
Q Consensus 663 EL~~lkeEaE~aKa 676 (910)
.++.+++|+...+.
T Consensus 108 n~Q~lkeE~dd~ke 121 (246)
T KOG4657|consen 108 NLQLLKEEKDDSKE 121 (246)
T ss_pred HHHHHHHHhhhHHH
Confidence 33333333333333
No 403
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=24.15 E-value=2e+03 Score=29.92 Aligned_cols=41 Identities=15% Similarity=0.186 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHH
Q 002541 773 LEEVNKEIATRKEALKVAMEKAEKAKEGKLGIEQELRKWRA 813 (910)
Q Consensus 773 le~~~~Eie~~k~aleeAleraE~Ae~aK~avE~ELRkwR~ 813 (910)
.+++..++++.+..|+.+......++....+++.++.+.+.
T Consensus 923 ~eel~a~L~e~r~rL~~l~~el~~~~~~~~~a~~~~~~a~~ 963 (1353)
T TIGR02680 923 VDEIRARLAETRAALASGGRELPRLAEALATAEEARGRAEE 963 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555555555444444444444443
No 404
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=24.04 E-value=1.1e+03 Score=26.60 Aligned_cols=23 Identities=22% Similarity=0.345 Sum_probs=15.5
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHH
Q 002541 293 LERSHEEMPEYRKRSEAAEVAKN 315 (910)
Q Consensus 293 L~~~qeeL~k~Keqle~aE~~k~ 315 (910)
...++++|.+|.+-....|+...
T Consensus 29 f~~~reEl~EFQegSrE~Eaele 51 (333)
T KOG1853|consen 29 FLQMREELNEFQEGSREIEAELE 51 (333)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHH
Confidence 44567778888877766665554
No 405
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=23.91 E-value=9.5e+02 Score=26.06 Aligned_cols=48 Identities=21% Similarity=0.239 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHH
Q 002541 571 AEVNCLKVAATSLQSELEREKSALAAIRQREGMASVAVASLEAELDRT 618 (910)
Q Consensus 571 eEl~sL~~~vesLrsELek~K~ELeelKeke~~a~~eI~sL~eELer~ 618 (910)
..|..|+..+..+...|...+..+..++..+..+........-|++.+
T Consensus 32 s~Ie~LK~~i~~~E~~l~~~r~~~~~aK~~Y~~ai~~Rs~sQrEvn~L 79 (207)
T PF05546_consen 32 SEIEKLKKSIEELEDELEAARQEVREAKAAYDDAIQQRSSSQREVNEL 79 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666666666666666666655555444444433
No 406
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=23.84 E-value=4.8e+02 Score=27.01 Aligned_cols=65 Identities=17% Similarity=0.189 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH-HHHhHHHHHHHHHHHHHHH
Q 002541 561 EVKLNIEKATAEVNCLKVAATSLQSELEREKSALAAIRQREGMASV-AVASLEAELDRTRSEIALV 625 (910)
Q Consensus 561 e~K~~Leka~eEl~sL~~~vesLrsELek~K~ELeelKeke~~a~~-eI~sL~eELer~ksELe~~ 625 (910)
-.+..++.+.+++..|...++.|....+.+-..+.-.+.+....+. .++.|.++++.++..++.+
T Consensus 69 g~kk~~~~~~eelerLe~~iKdl~~lye~Vs~d~Npf~s~~~qes~~~veel~eqV~el~~i~emv 134 (157)
T COG3352 69 GQKKQLQDIKEELERLEENIKDLVSLYELVSRDFNPFMSKTPQESRGIVEELEEQVNELKMIVEMV 134 (157)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444333322222 3566666666665554433
No 407
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=23.76 E-value=3.3e+02 Score=33.76 Aligned_cols=105 Identities=17% Similarity=0.244 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhHHHHHHHHHHHHhhhhh-hhhHHHHHHH
Q 002541 300 MPEYRKRSEAAEVAKNQVLKELDQTKRLVEELKLNLERAQTEEHQA---KQDSELAKLRVEEMEQGIAD-DASVAARAQL 375 (910)
Q Consensus 300 L~k~Keqle~aE~~k~qal~ELe~aKr~ieeL~~kLE~a~~e~~~A---~e~sE~ak~r~~ELEqgia~-~~~~a~k~eL 375 (910)
+.-|....+.+...+.+++..+..++..+..|...|..-+...... ..-.......+.+++.++.- .-...+...|
T Consensus 14 ~~~~~~~~ee~~~~~~~l~~~i~~~~~E~~~L~~~lg~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~L~~~~~~L~~~l 93 (619)
T PF03999_consen 14 LNVYMIKVEEANELKARLLQSIADAEAELADLSSELGEEQEHLCRELEKEPLSLEEEKDILQLEKSMPLKEQLPKLRPQL 93 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHhcccccccccccchhhhcccccchhhHHHHHHHH
Confidence 4445555555566666677777777777777733322111110000 00000011111122111100 0113355666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 376 EVAKARHVAAVSELKSVKDEVESLRKDYA 404 (910)
Q Consensus 376 E~ar~q~a~~laEL~svKeELekLrqEl~ 404 (910)
+..+.++..-+.++..+..+++.|..++.
T Consensus 94 e~l~~~~~eR~~~~~~L~~~~~~l~~~Lg 122 (619)
T PF03999_consen 94 EELRKEKEERMQEFKELQEQLEQLCEELG 122 (619)
T ss_dssp -----------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 66777777777777777777777776654
No 408
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=23.75 E-value=1.4e+03 Score=27.79 Aligned_cols=120 Identities=18% Similarity=0.153 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 323 QTKRLVEELKLNLERAQTEEHQAKQDSELAKLRVEEMEQGIADDASVAARAQLEVAKARHVAAVSELKSVKDEVESLRKD 402 (910)
Q Consensus 323 ~aKr~ieeL~~kLE~a~~e~~~A~e~sE~ak~r~~ELEqgia~~~~~a~k~eLE~ar~q~a~~laEL~svKeELekLrqE 402 (910)
...-+.+.|.+-=+.++.+...+++.+-....|+.-+|-.+.+ ++| +...+..-|---|.|+..+++.
T Consensus 207 al~~lq~~L~la~~~~~~~~e~~i~~~~~f~~r~~~~E~e~rn--------~~E----~~~lA~r~l~~~kKe~de~k~~ 274 (554)
T KOG4677|consen 207 ALRSLQDKLQLAEEAVSMHDENVITAVLIFLKRTLSKEIEFRN--------ELE----VRQLALRHLIHFKKEIDEQKLL 274 (554)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHH--------HHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555666677777777777776676655544432 222 2333333444444444444444
Q ss_pred HHH--HHHHHHHHHH---HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 403 YAS--LVTEKDIAVK---KAEEAISA---SKEVEKTVEELTIELIATKESLESAHAAHLE 454 (910)
Q Consensus 403 l~~--l~eeK~~A~k---~AeEA~~a---ak~~eekveeLt~EL~~lKEsLe~a~aa~~e 454 (910)
+.- +++.|..-+- +++-.... .-....+++++..|+.=.++.++++...+..
T Consensus 275 ~~l~~~l~~keeL~~s~~~e~~i~qs~~kstas~~E~ee~rve~~~s~ed~~~~q~q~~~ 334 (554)
T KOG4677|consen 275 LDLFRFLDRKEELALSHYREHLIIQSPDKSTASRKEFEETRVELPFSAEDSAHIQDQYTL 334 (554)
T ss_pred HHHHHHhhhHHHHHHHHHHHhhccCCCCcchhHHHHHHHHHhcccccHHHHHHHHHHHHH
Confidence 433 4444432221 11111000 1234666777777776666666666655443
No 409
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=23.58 E-value=6.4e+02 Score=30.52 Aligned_cols=44 Identities=25% Similarity=0.246 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 002541 565 NIEKATAEVNCLKVAATSLQSELEREKSALAAIRQREGMASVAV 608 (910)
Q Consensus 565 ~Leka~eEl~sL~~~vesLrsELek~K~ELeelKeke~~a~~eI 608 (910)
.|..+..++..++..+..|..+=+.++.+-+.+++++......|
T Consensus 60 TlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i 103 (472)
T TIGR03752 60 TLRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQI 103 (472)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 34444455555555555555555566666666666555554443
No 410
>cd07658 F-BAR_NOSTRIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Nitric Oxide Synthase TRaffic INducer (NOSTRIN). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Nitric Oxide Synthase TRaffic INducer (NOSTRIN) is expressed in endothelial and epithelial cells and is involved in the regulation, trafficking and targeting of endothelial NOS (eNOS). NOSTRIN facilitates the endocytosis of eNOS by coordinating the functions of dynamin and the Wiskott-Aldrich syndrome protein (WASP). Increased expression of NOSTRIN may be correlated to preeclampsia. NOSTRIN contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. The F-BAR domain of NOSTRIN is necessary and sufficient fo
Probab=23.08 E-value=9.9e+02 Score=25.96 Aligned_cols=46 Identities=15% Similarity=0.273 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 002541 311 EVAKNQVLKELDQTKRLVEELKLNLERAQTEEHQAKQDSELAKLRV 356 (910)
Q Consensus 311 E~~k~qal~ELe~aKr~ieeL~~kLE~a~~e~~~A~e~sE~ak~r~ 356 (910)
...+..+..+.+.+.+.+..+..++.++...-..+..+.|.+..++
T Consensus 101 ~k~rK~~~~~~~k~qk~~~~~~~~~~k~kk~y~~~~kE~e~a~~~~ 146 (239)
T cd07658 101 HKTRKPVENEVDKAAKLLTDWRSEQIKVKKKLHGLARENEKLQDQV 146 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667777788888877777777777777666666655555443
No 411
>PF12001 DUF3496: Domain of unknown function (DUF3496); InterPro: IPR021885 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 110 amino acids in length.
Probab=23.01 E-value=5e+02 Score=25.52 Aligned_cols=39 Identities=26% Similarity=0.170 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHH
Q 002541 591 KSALAAIRQREGMASVAVASLEAELDRTRSEIALVQMKE 629 (910)
Q Consensus 591 K~ELeelKeke~~a~~eI~sL~eELer~ksELe~~kake 629 (910)
+.+|+..++-+-.-.....+|..+|.++...|+.+..+.
T Consensus 28 ~~eLEkYkqly~eElk~r~SLs~kL~ktnerLaevstkL 66 (111)
T PF12001_consen 28 KTELEKYKQLYLEELKLRKSLSNKLNKTNERLAEVSTKL 66 (111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 566777777777666677778888888888877776543
No 412
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=22.89 E-value=1.4e+03 Score=27.65 Aligned_cols=313 Identities=25% Similarity=0.278 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHH
Q 002541 303 YRKRSEAAEVAKNQVLKELDQTKRLVEELKLNLERAQTEEHQA---KQDSELAKLRVEEMEQGIADDASVAARAQLEVAK 379 (910)
Q Consensus 303 ~Keqle~aE~~k~qal~ELe~aKr~ieeL~~kLE~a~~e~~~A---~e~sE~ak~r~~ELEqgia~~~~~a~k~eLE~ar 379 (910)
.+++.+.=+-|+.|+-. |++|+.-++....++.+- .+.-+--..|...|-.|+-... +-+.
T Consensus 111 IrREmeLEe~C~eQAak--------IeQLNrLVqQyK~ErE~naiI~Q~re~k~~rleslmdg~l~~~--------e~~~ 174 (488)
T PF06548_consen 111 IRREMELEEVCAEQAAK--------IEQLNRLVQQYKHERECNAIIAQTREDKILRLESLMDGVLPTE--------EFID 174 (488)
T ss_pred HHHHHHHHHHHHHHHHH--------HHHHHHHHHHHcccchhhHHHHHhhhhHHHHHHHhhccccchH--------HHhh
Q ss_pred HHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------
Q 002541 380 ARHVAAVSELKSVKD------EVESLRKDYASLVTEKDIAVKKAEEAISASKEVEKTVEELTIELI-------------- 439 (910)
Q Consensus 380 ~q~a~~laEL~svKe------ELekLrqEl~~l~eeK~~A~k~AeEA~~aak~~eekveeLt~EL~-------------- 439 (910)
+.|..++-|-...+. |+-+.+.++..+.++.. -.++..=-....+.+.+.+..|...|-
T Consensus 175 ee~~sl~~e~KlLk~~~en~pevl~~~~E~k~~qeel~-~~~~~~~d~~EkE~Ll~EIq~Lk~qL~~~~~ss~s~~~~~~ 253 (488)
T PF06548_consen 175 EEYVSLMHEHKLLKEKYENHPEVLKEKIELKRVQEELE-EYRNFSFDMGEKEVLLEEIQDLKSQLQYYTDSSMSTDRLRS 253 (488)
T ss_pred hHhhhhhhHhhhhhhhccCchHHHhhHhHHHHHHHHHH-hccccccCcchHHHHHHHHHHHHHHHHhccccccccccccc
Q ss_pred --------------------HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 002541 440 --------------------ATKESLESAHAAHLEAEEQRIGAAMARDQDSHLWEKELKQAEEELQKLTQQILSAKDLRS 499 (910)
Q Consensus 440 --------------------~lKEsLe~a~aa~~eAEe~r~~v~la~eqd~~~~e~eL~qaEEEie~Lr~el~~a~dLea 499 (910)
...+.|+......-++|-.=+.+. .+|..
T Consensus 254 sll~~s~~~~~~~~~~~~~~~~~~~le~er~~wtE~ES~WIsLt-------------------------------eeLR~ 302 (488)
T PF06548_consen 254 SLLQRSYQLRPSAIPESGDENAEEELEQERQRWTEAESKWISLT-------------------------------EELRV 302 (488)
T ss_pred cHHhhhhccCCCCCcccCCCchhhhHHHHHHHHHHHHhhhhhhH-------------------------------HHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhccccCCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 500 KLDTASALLLDLKAELSAYMESKLKEESNEEGHSNGELEEPERKTHTDIQAAVASAKKELEEVKLNIEKATAEVNCLKVA 579 (910)
Q Consensus 500 kLeea~~~Le~Lk~ELa~~lE~kL~e~~~ei~~lq~~L~E~ek~~~~~l~esL~sakkELee~K~~Leka~eEl~sL~~~ 579 (910)
.|+....+.+.++.|| +.++.+...+.++|..+..=-..+=..-....+....|-..
T Consensus 303 dle~~r~~aek~~~EL-----------------------~~Ek~c~eEL~~al~~A~~GhaR~lEqYadLqEk~~~Ll~~ 359 (488)
T PF06548_consen 303 DLESSRSLAEKLEMEL-----------------------DSEKKCTEELDDALQRAMEGHARMLEQYADLQEKHNDLLAR 359 (488)
T ss_pred HHHHHHHHHHHHHHHH-----------------------HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHH-----------HHHHHHHHH---HHHHHhhhcchHHHHH
Q 002541 580 ATSLQSELEREKSALAAIRQREGMASVAVASLEAELDRTRS-----------EIALVQMKE---KEAREKTVELPKQLQV 645 (910)
Q Consensus 580 vesLrsELek~K~ELeelKeke~~a~~eI~sL~eELer~ks-----------ELe~~kake---eeare~~~eL~~eLqq 645 (910)
-..+..-+..+|..-..+ ...+.-..=+.+|-.+|.-++. +-..++... .++-....+|-..|..
T Consensus 360 Hr~i~egI~dVKkaAakA-g~kG~~~rF~~slaaEiSalr~erEkEr~~l~~eNk~L~~QLrDTAEAVqAagEllvrl~e 438 (488)
T PF06548_consen 360 HRRIMEGIEDVKKAAAKA-GVKGAESRFINSLAAEISALRAEREKERRFLKDENKGLQIQLRDTAEAVQAAGELLVRLRE 438 (488)
T ss_pred HHHHHHHHHHHHHHHHHh-ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cHHHHHHHHHH
Q 002541 646 AAQEADQAKSLAQAAGEELHKAKEEAEQAKA----GASTIESRLTA 687 (910)
Q Consensus 646 ls~EaEeAKkeae~ae~EL~~lkeEaE~aKa----eI~taE~rL~a 687 (910)
+..-+--|+..+..++.+..+++.+++.+|. +|.++...|..
T Consensus 439 aeea~~~a~~r~~~~eqe~ek~~kqiekLK~kh~~Ei~t~kq~lae 484 (488)
T PF06548_consen 439 AEEAASVAQERAMDAEQENEKAKKQIEKLKRKHKMEISTMKQYLAE 484 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 413
>cd07678 F-BAR_FCHSD1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH and double SH3 domains 1 (FCHSD1). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FCH and double SH3 domains 1 (FCHSD1) contains an N-terminal F-BAR domain and two SH3 domains at the C-terminus. It has been characterized only in silico, and its biological function is still unknown. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=22.88 E-value=1.1e+03 Score=26.40 Aligned_cols=94 Identities=16% Similarity=0.244 Sum_probs=0.0
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhhhhhHHHH
Q 002541 293 LERSHEEMPEYRKRSEAAEVAKNQVLKELDQTKRLVEELKLNLERAQTEEHQAKQDSELAKLRVEEMEQGIADDASVAAR 372 (910)
Q Consensus 293 L~~~qeeL~k~Keqle~aE~~k~qal~ELe~aKr~ieeL~~kLE~a~~e~~~A~e~sE~ak~r~~ELEqgia~~~~~a~k 372 (910)
+.+-+ ..+++.+++..+.....++..||+.+|+. ..+...+-..|++-...+..+....+..+........|
T Consensus 105 ~~ke~-~~KK~~e~~~~lQ~eL~~~~keL~ksKK~-------Y~~~~~ea~~A~~K~~e~e~k~~K~~~~~~~sk~~~eK 176 (263)
T cd07678 105 SAKEQ-VLKKSTEQLQKAQAELLETVKELSKSKKL-------YGQLERVSEVAKEKAADVEARLNKSDHGIFHSKASLQK 176 (263)
T ss_pred HHHHH-HHHhhHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhhhhhhhccccHHHHHH
Q ss_pred -------------HHHHHHHHHHHHHHHHHHHHHH
Q 002541 373 -------------AQLEVAKARHVAAVSELKSVKD 394 (910)
Q Consensus 373 -------------~eLE~ar~q~a~~laEL~svKe 394 (910)
..+..+|..|...+..-.....
T Consensus 177 ~~~K~~~~~~~~~~k~~~arNeYll~L~aaNa~q~ 211 (263)
T cd07678 177 LSAKFSAQSAEYSQQLQAARNEYLLNLVAANAHLD 211 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 414
>PRK12704 phosphodiesterase; Provisional
Probab=22.64 E-value=1.5e+03 Score=27.79 Aligned_cols=138 Identities=17% Similarity=0.213 Sum_probs=0.0
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHH
Q 002541 539 EPERKTHTDIQAAVASAKKELEEVKLNIEKA----TAEVNCLKVAATSLQSELEREKSALAAIRQREGMASVAVASLEAE 614 (910)
Q Consensus 539 E~ek~~~~~l~esL~sakkELee~K~~Leka----~eEl~sL~~~vesLrsELek~K~ELeelKeke~~a~~eI~sL~eE 614 (910)
+...............++.|+...+..++.- ..++......+..-...|++....|+.....+......+.....+
T Consensus 46 eA~~eAke~~ke~~leaeeE~~~~R~Ele~e~~~~e~~L~qrE~rL~~Ree~Le~r~e~Lekke~eL~~re~~Le~re~e 125 (520)
T PRK12704 46 EAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQE 125 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcchHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002541 615 LDRTRSEIALVQMKEKEAREKTVELPKQLQV---AAQEADQAKSLAQAAGEELHKAKEEAEQAKA 676 (910)
Q Consensus 615 Ler~ksELe~~kakeeeare~~~eL~~eLqq---ls~EaEeAKkeae~ae~EL~~lkeEaE~aKa 676 (910)
+.....+++.+..+....-+.+..|..+=-+ +..=-++++..+..+-.+...--.+....++
T Consensus 126 Le~~~~~~~~~~~~~~~~l~~~a~lt~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a 190 (520)
T PRK12704 126 LEKKEEELEELIEEQLQELERISGLTAEEAKEILLEKVEEEARHEAAVLIKEIEEEAKEEADKKA 190 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 415
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=22.62 E-value=1.4e+03 Score=27.50 Aligned_cols=21 Identities=19% Similarity=0.332 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 002541 551 AVASAKKELEEVKLNIEKATA 571 (910)
Q Consensus 551 sL~sakkELee~K~~Leka~e 571 (910)
.++.+..|.+..+.-|+...+
T Consensus 151 e~~~~~~e~~~Y~~~l~~Le~ 171 (447)
T KOG2751|consen 151 EVEDAEDEVDTYKACLQRLEQ 171 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 344455555555554444443
No 416
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=22.37 E-value=9.6e+02 Score=25.79 Aligned_cols=23 Identities=22% Similarity=0.348 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 002541 553 ASAKKELEEVKLNIEKATAEVNC 575 (910)
Q Consensus 553 ~sakkELee~K~~Leka~eEl~s 575 (910)
-.+++||.++...|.++..+...
T Consensus 99 vrLkrELa~Le~~l~~~~~~~~~ 121 (195)
T PF12761_consen 99 VRLKRELAELEEKLSKVEQAAES 121 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 36777887777777777776655
No 417
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=22.29 E-value=1.6e+03 Score=28.03 Aligned_cols=14 Identities=14% Similarity=0.558 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHH
Q 002541 472 LWEKELKQAEEELQ 485 (910)
Q Consensus 472 ~~e~eL~qaEEEie 485 (910)
.|.+.|....+..-
T Consensus 345 ~~~r~~e~~kd~~~ 358 (607)
T KOG0240|consen 345 EWKRKLEKKKDKNV 358 (607)
T ss_pred HHHHHHHHHHhHHH
Confidence 34444444444333
No 418
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=22.24 E-value=1.4e+03 Score=27.25 Aligned_cols=54 Identities=22% Similarity=0.340 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 370 AARAQLEVAKARHVAAVSELK-SVKDEVESLRKDYASLVTEKDIAVKKAEEAISA 423 (910)
Q Consensus 370 a~k~eLE~ar~q~a~~laEL~-svKeELekLrqEl~~l~eeK~~A~k~AeEA~~a 423 (910)
....-+..+...|...|.+|. .-..||++|+++-+-++.+-.+|--.|-++.+.
T Consensus 338 tCERgfAaMEetHQkkiEdLQRqHqRELekLreEKdrLLAEETAATiSAIEAMKn 392 (593)
T KOG4807|consen 338 TCERGFAAMEETHQKKIEDLQRQHQRELEKLREEKDRLLAEETAATISAIEAMKN 392 (593)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHH
Confidence 344455666667888888887 456799999999998887766655555444443
No 419
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=22.15 E-value=4.6e+02 Score=30.40 Aligned_cols=23 Identities=22% Similarity=0.218 Sum_probs=14.0
Q ss_pred CCCCCCccCcccccccCCCCCCc
Q 002541 56 DTADVPVGGQDEVLSADNSVSNS 78 (910)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~ 78 (910)
+++-..-+++..+|.+|..||++
T Consensus 40 ~tf~~~Dg~s~~ll~~~GTIp~~ 62 (365)
T KOG2391|consen 40 DTFTHNDGRSRLLLQLDGTIPVP 62 (365)
T ss_pred ceEEecCCCccchhhccCccccc
Confidence 55555556666677777666554
No 420
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=22.08 E-value=9.8e+02 Score=25.55 Aligned_cols=90 Identities=23% Similarity=0.300 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHH-HHHHHHHHHH
Q 002541 611 LEAELDRTRSEIALVQMKEKEAREKTVELPKQLQVAAQEADQAKSLAQAAGEELHKAKEEAEQAKAGAS-TIESRLTAAR 689 (910)
Q Consensus 611 L~eELer~ksELe~~kakeeeare~~~eL~~eLqqls~EaEeAKkeae~ae~EL~~lkeEaE~aKaeI~-taE~rL~aA~ 689 (910)
|...-.++...|+.+.....++.....+....|.+++.++.+....+ ...++.+.+..+..+. .++..+..++
T Consensus 82 Le~R~~~I~~~L~~Ae~~k~eAe~~~~~ye~~L~~Ar~eA~~Ii~~A------r~ea~~~~e~~~~~a~~ea~~~l~~Ae 155 (204)
T PRK09174 82 IETRRDRIAQDLDQAARLKQEADAAVAAYEQELAQARAKAHSIAQAA------REAAKAKAEAERAAIEASLEKKLKEAE 155 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHH
Q 002541 690 KEIEAARASEKLALAAI 706 (910)
Q Consensus 690 KElEAAKAsEa~Ala~i 706 (910)
+.++..|......+..+
T Consensus 156 ~~I~~ek~~A~~el~~~ 172 (204)
T PRK09174 156 ARIAAIKAKAMADVGSI 172 (204)
T ss_pred HHHHHHHHHHHHHHHHH
No 421
>cd07679 F-BAR_PACSIN2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 2 (PACSIN2). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 2 or Syndapin II is expressed ubiquitously and is involved in the regulation of tubulin polymerization. It associates with Golgi membranes and forms a complex with dynamin II which is crucial in promoting vesicle formation from the trans-Golgi network. PACSIN 2 contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave su
Probab=22.07 E-value=1.1e+03 Score=26.28 Aligned_cols=96 Identities=14% Similarity=0.173 Sum_probs=47.1
Q ss_pred ccccccCCCcccHHHHHHhcCCcccccccccchHHHhHHHHHHH-HHHHh-hHHHH--------HHHHHHHHHHHHHHHH
Q 002541 250 RGLIDTTAPFESVKEVVSKFGGIVDWKAHRMQTVERRKYVEQEL-ERSHE-EMPEY--------RKRSEAAEVAKNQVLK 319 (910)
Q Consensus 250 r~eIDT~aPf~SVK~AvslFGe~~~~K~~r~~~~ER~~~~e~EL-~~~qe-eL~k~--------Keqle~aE~~k~qal~ 319 (910)
++.|++.+-++|++.|..-|-+- .++.+.+..+| ..+.. ++.++ ..+.-..=.....+.+
T Consensus 50 ~~~ie~gpeyGTl~~aw~~~~~E----------ae~~s~~H~~l~~~L~~e~~e~ir~wQKe~~hk~~~~~~Ke~k~~e~ 119 (258)
T cd07679 50 RQLVEKGPQYGTVEKAWCALMSE----------AEKVSELHLEVKASLMNEDFEKIKNWQKEAFHKQMMGGFKETKEAED 119 (258)
T ss_pred HhccccCCccchHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhHHHH
Confidence 46778776668888886544332 24444333333 11111 12222 1111111112234555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 002541 320 ELDQTKRLVEELKLNLERAQTEEHQAKQDSELAKLR 355 (910)
Q Consensus 320 ELe~aKr~ieeL~~kLE~a~~e~~~A~e~sE~ak~r 355 (910)
-.+.+++-=--+-.+++++...=.+|+.+...|..+
T Consensus 120 ~f~KaQKpw~k~~kkv~~aKk~Y~~aCk~e~~A~~~ 155 (258)
T cd07679 120 GFRKAQKPWAKKLKEVEAAKKAYHTACKEEKLATSR 155 (258)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 556666665556666666666666665555555443
No 422
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=21.93 E-value=9.7e+02 Score=25.41 Aligned_cols=66 Identities=23% Similarity=0.322 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 387 SELKSVKDEVESLRKDYASLVTEKDIAVKKAEEAISA--SKEVEKTVEELTIELIATKESLESAHAAH 452 (910)
Q Consensus 387 aEL~svKeELekLrqEl~~l~eeK~~A~k~AeEA~~a--ak~~eekveeLt~EL~~lKEsLe~a~aa~ 452 (910)
.||.....++.+|...+-++..........+.++.++ ..++.+.+.+|..+.....+-|...++++
T Consensus 79 eel~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~~k~g~ 146 (201)
T KOG4603|consen 79 EELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAGYRERLKNIKAGT 146 (201)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5555666666666666666666666555566666555 56788888888888888888888877653
No 423
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=21.88 E-value=5.8e+02 Score=22.79 Aligned_cols=51 Identities=24% Similarity=0.219 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHH
Q 002541 575 CLKVAATSLQSELEREKSALAAIRQREGMASVAVASLEAELDRTRSEIALV 625 (910)
Q Consensus 575 sL~~~vesLrsELek~K~ELeelKeke~~a~~eI~sL~eELer~ksELe~~ 625 (910)
.|...++.|-.-...++.+=..++++......+...|.+....+++.++.+
T Consensus 4 ~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEam 54 (65)
T TIGR02449 4 ALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAM 54 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444555555555555555555555555555555555554443
No 424
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=21.80 E-value=1e+03 Score=27.80 Aligned_cols=36 Identities=17% Similarity=0.228 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHH
Q 002541 623 ALVQMKEKEAREKTVELPKQLQVAAQEADQAKSLAQAAGE 662 (910)
Q Consensus 623 e~~kakeeeare~~~eL~~eLqqls~EaEeAKkeae~ae~ 662 (910)
..++.+-.++...+.++...+++ ++-||+++...-.
T Consensus 74 ~~ik~kA~~sE~~V~~it~dIk~----LD~AKrNLT~SIT 109 (383)
T PF04100_consen 74 SEIKSKAEESEQMVQEITRDIKQ----LDNAKRNLTQSIT 109 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 33333333334444444444432 3445665554433
No 425
>PF09727 CortBP2: Cortactin-binding protein-2; InterPro: IPR019131 This entry represents a N-terminal domain found in cortactin-binding protein 2 and in filamin A interacting protein 1 (Filip1). In addition to being a positional candidate for autism, cortactin-binding protein 2 is expressed at highest levels in the brain in humans. Towards the C-terminal end of this protein are a series of proline-rich regions which are likely to be the points of interaction with the SH3 domain of cortactin. The human protein has six associated ankyrin repeat domains (IPR002110 from INTERPRO) towards the C terminus of the protein which act as protein-protein interaction domains []. Filip1 controls the start of neocortical cell migration from the ventricular zone by acting through a filamin-A/F-actin axis. It may be able to induce the degradation of Filamin A [, ].
Probab=21.49 E-value=1e+03 Score=25.53 Aligned_cols=63 Identities=22% Similarity=0.237 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhhHHHHHHHHHHHHhh
Q 002541 300 MPEYRKRSEAAEVAKNQVLKELDQTKRLVEELKLNLER----AQTEEHQAKQDSELAKLRVEEMEQG 362 (910)
Q Consensus 300 L~k~Keqle~aE~~k~qal~ELe~aKr~ieeL~~kLE~----a~~e~~~A~e~sE~ak~r~~ELEqg 362 (910)
-.+...|+..||.+-.+++.||+.-|+.=.+...+-+. +..++.+..+..|..+.....+|+.
T Consensus 97 q~Rm~~qL~~aE~rhrr~i~eLe~EKrkh~~~~aqgDD~t~lLEkEReRLkq~lE~Ek~~~~~~EkE 163 (192)
T PF09727_consen 97 QRRMLEQLAAAEKRHRRTIQELEEEKRKHAEDMAQGDDFTNLLEKERERLKQQLEQEKAQQKKLEKE 163 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677899999999999999999999876655544322 4455555666666666665555543
No 426
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=21.42 E-value=3.5e+02 Score=25.37 Aligned_cols=44 Identities=14% Similarity=0.203 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHH
Q 002541 642 QLQVAAQEADQAKSLAQAAGEELHKAKEEAEQAKAGASTIESRL 685 (910)
Q Consensus 642 eLqqls~EaEeAKkeae~ae~EL~~lkeEaE~aKaeI~taE~rL 685 (910)
++.++++++..++.....+...+..++..+..++.+...+-.||
T Consensus 25 kvdqLss~V~~L~~kvdql~~dv~~a~aaa~aAk~EA~RAN~Ri 68 (85)
T PRK09973 25 KVNQLASNVQTLNAKIARLEQDMKALRPQIYAAKSEANRANTRL 68 (85)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444444444444444444444444444444444433333333
No 427
>KOG0992 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.41 E-value=1.6e+03 Score=27.67 Aligned_cols=64 Identities=17% Similarity=0.160 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHH
Q 002541 553 ASAKKELEEVKLNIEKATAEVNCLKVAATSLQSELEREKSALAAIRQREGMASVAVASLEAELDR 617 (910)
Q Consensus 553 ~sakkELee~K~~Leka~eEl~sL~~~vesLrsELek~K~ELeelKeke~~a~~eI~sL~eELer 617 (910)
..+..++.+.-..|+++++++..-...+.-+......+--.+...+ .+++....+..+..++..
T Consensus 294 ~~l~q~~~~~~~eL~K~kde~~~n~~~~~lie~lq~el~~al~~c~-eeN~~~t~~n~e~~~lq~ 357 (613)
T KOG0992|consen 294 DDLIQSRKQVSFELEKAKDEIKQNDDKVKLIEELQDELSVALKECR-EENKIETQVNFERNKLQN 357 (613)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHhhc
Confidence 3445555566666667777776555444333333333333333333 233334444444444433
No 428
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=21.29 E-value=7.4e+02 Score=28.26 Aligned_cols=9 Identities=0% Similarity=0.147 Sum_probs=3.8
Q ss_pred HHHHHHHHH
Q 002541 330 ELKLNLERA 338 (910)
Q Consensus 330 eL~~kLE~a 338 (910)
++..++..+
T Consensus 96 ~~~~~~~~~ 104 (370)
T PRK11578 96 QAENQIKEV 104 (370)
T ss_pred HHHHHHHHH
Confidence 444444333
No 429
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=21.10 E-value=8e+02 Score=24.16 Aligned_cols=44 Identities=27% Similarity=0.397 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 302 EYRKRSEAAEVAKNQVLKELDQTKRLVEELKLNLERAQTEEHQA 345 (910)
Q Consensus 302 k~Keqle~aE~~k~qal~ELe~aKr~ieeL~~kLE~a~~e~~~A 345 (910)
-.+.+.+.=+....+...+++.++..+++|+..|..++..+.+=
T Consensus 71 ~n~~e~e~Y~~~~~~i~~~i~~~k~~ie~lk~~L~~ak~~r~~k 114 (139)
T PF05615_consen 71 MNKRERENYEQLNEEIEQEIEQAKKEIEELKEELEEAKRVRQNK 114 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555566677788888888888888888888888775554
No 430
>PF11172 DUF2959: Protein of unknown function (DUF2959); InterPro: IPR021342 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=20.83 E-value=1.1e+03 Score=25.55 Aligned_cols=110 Identities=14% Similarity=0.204 Sum_probs=76.2
Q ss_pred cchHHHhHHHHHHHHHHHhhHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 002541 280 MQTVERRKYVEQELERSHEEMPEYRKRSEAA--------EVAKNQVLKELDQTKRLVEELKLNLERAQTEEHQAKQDSEL 351 (910)
Q Consensus 280 ~~~~ER~~~~e~EL~~~qeeL~k~Keqle~a--------E~~k~qal~ELe~aKr~ieeL~~kLE~a~~e~~~A~e~sE~ 351 (910)
.-.+.|+..-..-+..+|++..-+=+++... +.....+..+++......++++..+..++.-
T Consensus 24 dilvdrVe~Ardsq~eaqeQF~sALe~f~sl~~~~ggdLe~~Y~~ln~~ye~s~~~A~~V~~RI~~vE~V---------- 93 (201)
T PF11172_consen 24 DILVDRVEDARDSQQEAQEQFKSALEQFKSLVNFDGGDLEDKYNALNDEYESSEDAAEEVSDRIDAVEDV---------- 93 (201)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------
Confidence 3456777665555778888888888888764 6778888899999999999988777666544
Q ss_pred HHHHHHHHHhhhhhhhh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 352 AKLRVEEMEQGIADDAS----VAARAQLEVAKARHVAAVSELKSVKDEVESL 399 (910)
Q Consensus 352 ak~r~~ELEqgia~~~~----~a~k~eLE~ar~q~a~~laEL~svKeELekL 399 (910)
+..=+.|-+.++..=.+ ..-+++|...|.+|..++..+..+..-++=+
T Consensus 94 a~ALF~EWe~EL~~Y~~~sLR~~S~~kL~~tr~~Y~~L~~aM~~Ae~km~PV 145 (201)
T PF11172_consen 94 ADALFDEWEQELDQYSNASLRRASEQKLAETRRRYAQLIKAMRRAESKMQPV 145 (201)
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChH
Confidence 22233444444433222 3346789999999999998888777655444
No 431
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=20.80 E-value=1.4e+03 Score=26.76 Aligned_cols=11 Identities=36% Similarity=0.806 Sum_probs=6.5
Q ss_pred cCCccccCCCc
Q 002541 146 IEPSDKLALPH 156 (910)
Q Consensus 146 ~~~~~~~~~~~ 156 (910)
|++.+.|-||-
T Consensus 103 Vd~nG~V~LPY 113 (365)
T KOG2391|consen 103 VDPNGKVYLPY 113 (365)
T ss_pred cCCCCeEechh
Confidence 45666666653
No 432
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=20.39 E-value=1.4e+02 Score=28.59 Aligned_cols=50 Identities=18% Similarity=0.197 Sum_probs=30.8
Q ss_pred hHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHH
Q 002541 640 PKQLQVAAQEA-DQAKSLAQAAGEELHKAKEEAEQAKAGASTIESRLTAAR 689 (910)
Q Consensus 640 ~~eLqqls~Ea-EeAKkeae~ae~EL~~lkeEaE~aKaeI~taE~rL~aA~ 689 (910)
..+|..++..+ ++|..+..+++.+...+......+...+.+.+..|...+
T Consensus 21 e~ElEeLTasLFeEAN~MVa~ar~e~~~~e~k~~~le~~l~e~~~~l~~lq 71 (100)
T PF06428_consen 21 ESELEELTASLFEEANKMVADARRERAALEEKNEQLEKQLKEKEALLESLQ 71 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTHHCHCCCHCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555 666677766676666666666666666666665554443
No 433
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=20.17 E-value=1.5e+03 Score=27.00 Aligned_cols=12 Identities=33% Similarity=0.484 Sum_probs=6.2
Q ss_pred HHhHHHHHHHHH
Q 002541 284 ERRKYVEQELER 295 (910)
Q Consensus 284 ER~~~~e~EL~~ 295 (910)
+|...+..+|+.
T Consensus 32 ~R~~~I~~~L~e 43 (445)
T PRK13428 32 ARQDTVRQQLAE 43 (445)
T ss_pred HHHHHHHHHHHH
Confidence 455555555544
No 434
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=20.05 E-value=1.4e+03 Score=26.40 Aligned_cols=25 Identities=20% Similarity=0.238 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541 379 KARHVAAVSELKSVKDEVESLRKDY 403 (910)
Q Consensus 379 r~q~a~~laEL~svKeELekLrqEl 403 (910)
+.++..+-.+....+.||...+...
T Consensus 26 ~~~~~sL~qen~~Lk~El~~ek~~~ 50 (310)
T PF09755_consen 26 RKRIESLQQENRVLKRELETEKARC 50 (310)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3344544444444444444444333
Done!