Query 002541
Match_columns 910
No_of_seqs 273 out of 422
Neff 5.2
Searched_HMMs 29240
Date Tue Mar 26 15:43:59 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002541.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1262-1266//hhsearch_pdb/002541hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1i84_S Smooth muscle myosin he 1.0 1 1 92.7 12.6 320 370-699 861-1180(1184)
2 1c1g_A Tropomyosin; contractIl 1.0 1 1 59.7 45.2 280 369-692 2-281 (284)
3 3na7_A HP0958; flagellar bioge 1.0 1 1 45.3 21.8 90 608-697 55-146 (256)
4 3vkg_A Dynein heavy chain, cyt 1.0 1 1 44.7 27.0 81 370-450 2018-2098(3245)
5 3vkg_A Dynein heavy chain, cyt 1.0 1 1 43.9 27.9 25 468-492 2084-2108(3245)
6 2v71_A Nuclear distribution pr 1.0 1 1 33.3 21.0 17 293-309 26-42 (189)
7 3oja_B Anopheles plasmodium-re 1.0 1 1 30.3 13.6 140 566-712 433-580 (597)
8 3o0z_A RHO-associated protein 1.0 1 1 30.2 20.8 144 550-693 6-153 (168)
9 2efr_A General control protein 1.0 1 1 29.5 21.6 138 552-710 2-139 (155)
10 2v71_A Nuclear distribution pr 1.0 1 1 25.6 21.6 141 546-692 6-146 (189)
No 1
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=1.00 E-value=1 Score=92.75 Aligned_cols=320 Identities=17% Similarity=0.182 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999999999999999999999999999889999999999999999999899999
Q 002541 370 AARAQLEVAKARHVAAVSELKSVKDEVESLRKDYASLVTEKDIAVKKAEEAISASKEVEKTVEELTIELIATKESLESAH 449 (910)
Q Consensus 370 a~k~eLE~ar~q~a~~laEL~svKeELekLkqEl~sl~eeK~~A~k~AeEA~~~ak~~eekveeLt~EL~~lKEsLe~a~ 449 (910)
..+.+|+..+.+...+-..+.....++..|+.+...+............++......+......|..++..+...++...
T Consensus 861 ~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~~~L~~e~~~l~~~e~~l~~l~~~~~~Le~~l~ele~elee~e 940 (1184)
T 1i84_S 861 AKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEE 940 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 97799999998986543222258999999999999999998876787998899999999999999999999655432001
Q 002541 450 AAHLEAEEQRIGAAMARDQDSHLWEKELKQAEEELQKLTQQILSAKDLRSKLDTASALLLDLKAELSAYMESKLKEESNE 529 (910)
Q Consensus 450 aa~~eAEe~r~~v~la~eqd~~~~e~eL~qaEEEiekLr~el~~a~dLeskLeea~~~Le~Lk~ELa~~lE~kL~e~~~e 529 (910)
....+.+..... + +++......++...+..+..+..++. .++.++......+..++.++ ..++..+......
T Consensus 941 e~l~el~~e~~~--l--e~el~~L~~eleele~~l~~l~~e~~---~le~~l~~l~~el~~lee~l-~~l~~e~~~le~~ 1012 (1184)
T 1i84_S 941 ERSQQLQAEKKK--M--QQQMLDLEEQLEEEEAARQKLQLEKV---TADGKIKKMEDDILIMEDQN-NKLTKERKLLEER 1012 (1184)
T ss_dssp HC------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHH--H--HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_conf 999999998988--9--99999999999999988888899999---99999999999888789999-9999999999999
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 25778877513221034799999999999999999899999899999999999999999999999999999855589998
Q 002541 530 EGHSNGELEEPERKTHTDIQAAVASAKKELEEVKLNIEKATAEVNCLKVAATSLQSELEREKSALAAIRQREGMASVAVA 609 (910)
Q Consensus 530 i~~lq~~L~E~ek~~~~~l~esL~s~kkELeE~K~~Leka~eEi~sL~~~vesLrsELek~K~ELe~lkeke~~a~~eI~ 609 (910)
+..++..+....... ..+...+..+..++++....+......+..+......+..++...+..+..+..........+.
T Consensus 1013 i~~l~~~l~~~e~k~-~~lek~~~~le~el~ele~~le~~e~~~~ele~~~~~le~el~~l~~el~el~~el~~le~~l~ 1091 (1184)
T 1i84_S 1013 VSDLTTNLAEEEEKA-KNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLA 1091 (1184)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999-9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
Q ss_conf 49999998899999999889998874202128899999999999999999999999999999999940777999999999
Q 002541 610 SLEAELDRTRSEIALVQMKEKEAREKTVELPKQLQVAAQEADQAKSLAQAAGEELHKAKEEAEQAKAGASTIESRLTAAR 689 (910)
Q Consensus 610 sL~eELerlksELe~lkakeeeare~~~eL~~eLqqls~EaEeAKkeae~~e~EL~klkeEaE~aKaeI~taE~rL~aa~ 689 (910)
.+..++..+..+++............+..+...+..+..++++.+.....+..+..++..+.+.++..|..+..- ..++
T Consensus 1092 ~le~el~~l~~~le~l~~~~~~le~~l~~Le~eie~L~eeLee~~~~~~~le~q~~~L~~ele~L~~~Ieel~~v-n~aq 1170 (1184)
T 1i84_S 1092 KKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDT-TATQ 1170 (1184)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
T ss_conf 999999999999999998898789999999999999999999998889999999999999999999999987667-9999
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999989
Q 002541 690 KEIEAARASE 699 (910)
Q Consensus 690 kElEAAKAsE 699 (910)
.++-..+-++
T Consensus 1171 ~el~~~~e~~ 1180 (1184)
T 1i84_S 1171 QELRGSDYKD 1180 (1184)
T ss_dssp ----------
T ss_pred HHHHHHHCCC
T ss_conf 9988502122
No 2
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=1.00 E-value=1 Score=59.71 Aligned_cols=280 Identities=14% Similarity=0.128 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999999999999999999999999999988999999999999999999989999
Q 002541 369 VAARAQLEVAKARHVAAVSELKSVKDEVESLRKDYASLVTEKDIAVKKAEEAISASKEVEKTVEELTIELIATKESLESA 448 (910)
Q Consensus 369 ~a~k~eLE~ar~q~a~~laEL~svKeELekLkqEl~sl~eeK~~A~k~AeEA~~~ak~~eekveeLt~EL~~lKEsLe~a 448 (910)
.+.+..+...+.++..+...|.....+|..++..+..+.............+......+...+..+..++..+...+...
T Consensus 2 ~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (284)
T 1c1g_A 2 DAIKKKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKDAQEKLELAEKKATDA 81 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 37899999988768889999999999999999889888999999999999999999999999999999999999989877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99779999999898654322225899999999999999999887678799889999999999999999999965543200
Q 002541 449 HAAHLEAEEQRIGAAMARDQDSHLWEKELKQAEEELQKLTQQILSAKDLRSKLDTASALLLDLKAELSAYMESKLKEESN 528 (910)
Q Consensus 449 ~aa~~eAEe~r~~v~la~eqd~~~~e~eL~qaEEEiekLr~el~~a~dLeskLeea~~~Le~Lk~ELa~~lE~kL~e~~~ 528 (910)
................ ++......+..+...+. .+...+......+..+...+
T Consensus 82 ~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~~~------------- 134 (284)
T 1c1g_A 82 EADVASLNRRIQLFEE-----------ELDRAQERLATALQKLE---EAEKAADESERGMKVIESRA------------- 134 (284)
T ss_dssp HHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH-------------
T ss_pred HHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH-------------
T ss_conf 9889999999998898-----------89988988999999999---99988888999999888777-------------
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 12577887751322103479999999999999999989999989999999999999999999999999999985558999
Q 002541 529 EEGHSNGELEEPERKTHTDIQAAVASAKKELEEVKLNIEKATAEVNCLKVAATSLQSELEREKSALAAIRQREGMASVAV 608 (910)
Q Consensus 529 ei~~lq~~L~E~ek~~~~~l~esL~s~kkELeE~K~~Leka~eEi~sL~~~vesLrsELek~K~ELe~lkeke~~a~~eI 608 (910)
..+...+..+...+..+...+.....++..+...+..+..++......+..+..+.......+
T Consensus 135 -----------------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (284)
T 1c1g_A 135 -----------------QKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEEI 197 (284)
T ss_dssp -----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf -----------------510667999999999999988889988999998899888889989998987887999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
Q ss_conf 84999999889999999988999887420212889999999999999999999999999999999994077799999999
Q 002541 609 ASLEAELDRTRSEIALVQMKEKEAREKTVELPKQLQVAAQEADQAKSLAQAAGEELHKAKEEAEQAKAGASTIESRLTAA 688 (910)
Q Consensus 609 ~sL~eELerlksELe~lkakeeeare~~~eL~~eLqqls~EaEeAKkeae~~e~EL~klkeEaE~aKaeI~taE~rL~aa 688 (910)
..+..++......+..+.............+...+..+......+......+...+..+.......+..+..++.++...
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (284)
T 1c1g_A 198 KTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDHA 277 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999758778889999999999999888989988999998899999999999999999998899999999999
Q ss_pred HHHH
Q ss_conf 9999
Q 002541 689 RKEI 692 (910)
Q Consensus 689 ~kEl 692 (910)
...+
T Consensus 278 ~~~L 281 (284)
T 1c1g_A 278 LNDM 281 (284)
T ss_dssp HHHH
T ss_pred HHHH
T ss_conf 9974
No 3
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=1.00 E-value=1 Score=45.34 Aligned_cols=90 Identities=13% Similarity=0.174 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
Q ss_conf 984999999889999999988999887420--212889999999999999999999999999999999994077799999
Q 002541 608 VASLEAELDRTRSEIALVQMKEKEAREKTV--ELPKQLQVAAQEADQAKSLAQAAGEELHKAKEEAEQAKAGASTIESRL 685 (910)
Q Consensus 608 I~sL~eELerlksELe~lkakeeeare~~~--eL~~eLqqls~EaEeAKkeae~~e~EL~klkeEaE~aKaeI~taE~rL 685 (910)
+..+..++.+...+++.+..++.+.+..+. .-..+++.+..|++.++.....++.++..+....+..+..+..++.++
T Consensus 55 l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~~~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l 134 (256)
T 3na7_A 55 KLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEM 134 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999978999999999999998725899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999999999999
Q 002541 686 TAARKEIEAARA 697 (910)
Q Consensus 686 ~aa~kElEAAKA 697 (910)
.....++...++
T Consensus 135 ~~~~~~l~~~~~ 146 (256)
T 3na7_A 135 LELEKLALELES 146 (256)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
T ss_conf 999999999999
No 4
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=1.00 E-value=1 Score=44.68 Aligned_cols=81 Identities=11% Similarity=0.183 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999999999999999999999999999889999999999999999999899999
Q 002541 370 AARAQLEVAKARHVAAVSELKSVKDEVESLRKDYASLVTEKDIAVKKAEEAISASKEVEKTVEELTIELIATKESLESAH 449 (910)
Q Consensus 370 a~k~eLE~ar~q~a~~laEL~svKeELekLkqEl~sl~eeK~~A~k~AeEA~~~ak~~eekveeLt~EL~~lKEsLe~a~ 449 (910)
.+..+|+.++.+....-.+|..+.+.|..|+.+|+.+..+|..-..+++.+........+.+..|..|-.+|.+.+....
T Consensus 2018 ~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~~l~ 2097 (3245)
T 3vkg_A 2018 QLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSENFN 2097 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 99999999999999999999999999999999999999999999999999999999999999862113132999999999
Q ss_pred H
Q ss_conf 9
Q 002541 450 A 450 (910)
Q Consensus 450 a 450 (910)
.
T Consensus 2098 ~ 2098 (3245)
T 3vkg_A 2098 T 2098 (3245)
T ss_dssp H
T ss_pred H
T ss_conf 9
No 5
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=1.00 E-value=1 Score=43.91 Aligned_cols=25 Identities=8% Similarity=0.399 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 2225899999999999999999887
Q 002541 468 QDSHLWEKELKQAEEELQKLTQQIL 492 (910)
Q Consensus 468 qd~~~~e~eL~qaEEEiekLr~el~ 492 (910)
.+..+|.......+..+..|--+..
T Consensus 2084 ~Ek~RW~~~~~~l~~~~~~L~GD~L 2108 (3245)
T 3vkg_A 2084 SERGRWEQQSENFNTQMSTVVGDVV 2108 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCCHHHHHHHHHHHHHHCCHHHH
T ss_conf 1313299999999999972528999
No 6
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=1.00 E-value=1 Score=33.28 Aligned_cols=17 Identities=18% Similarity=0.513 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q ss_conf 99999559999999999
Q 002541 293 LERSHEEMPEYRKRSEA 309 (910)
Q Consensus 293 L~~~qeeL~k~Keqle~ 309 (910)
+..++.++..|.+....
T Consensus 26 ~~~le~El~EFqesSrE 42 (189)
T 2v71_A 26 FQEARDELVEFQEGSRE 42 (189)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
T ss_conf 99999999999998999
No 7
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=1.00 E-value=1 Score=30.34 Aligned_cols=140 Identities=11% Similarity=0.138 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Q ss_conf 9999989999999----999999999999999999999985558999849999998899999----99988999887420
Q 002541 566 IEKATAEVNCLKV----AATSLQSELEREKSALAAIRQREGMASVAVASLEAELDRTRSEIA----LVQMKEKEAREKTV 637 (910)
Q Consensus 566 Leka~eEi~sL~~----~vesLrsELek~K~ELe~lkeke~~a~~eI~sL~eELerlksELe----~lkakeeeare~~~ 637 (910)
++.....+..+.. ..+.|+.++...+.++..++++.......+..+..++...+.... ............+.
T Consensus 433 ~~~~~~~~~~~~~~~~~~~e~l~~e~~~~~~~i~~l~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~ 512 (597)
T 3oja_B 433 VQSLSHYITQQGGVPLQGNEQLEAEVNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLARSSDNLNKVFT 512 (597)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
T ss_conf 88888888987510157749998889889999999999998899999999998655554027661124787888999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 212889999999999999999999999999999999994077799999999999999999899999999986554
Q 002541 638 ELPKQLQVAAQEADQAKSLAQAAGEELHKAKEEAEQAKAGASTIESRLTAARKEIEAARASEKLALAAIKALQES 712 (910)
Q Consensus 638 eL~~eLqqls~EaEeAKkeae~~e~EL~klkeEaE~aKaeI~taE~rL~aa~kElEAAKAsEa~Ala~lkaL~e~ 712 (910)
.+....+....+....+......+.++..++.+.+..+..++....++....+|... ...+|+.|.+.
T Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~-------~~~~~~~l~~~ 580 (597)
T 3oja_B 513 HLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSL-------KRQKVKQLEAK 580 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
T ss_conf 988643236788888877655420111367766488999873101478998888999-------99999999987
No 8
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=1.00 E-value=1 Score=30.18 Aligned_cols=144 Identities=12% Similarity=0.183 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999989999989999999999999999999999999999985558999849999998899999999889
Q 002541 550 AAVASAKKELEEVKLNIEKATAEVNCLKVAATSLQSELEREKSALAAIRQREGMASVAVASLEAELDRTRSEIALVQMKE 629 (910)
Q Consensus 550 esL~s~kkELeE~K~~Leka~eEi~sL~~~vesLrsELek~K~ELe~lkeke~~a~~eI~sL~eELerlksELe~lkake 629 (910)
+.+..+.+.|+++...|..-.+-...++.....+...+...-.....++.+..........|..++..+...|+.-+..-
T Consensus 6 eKi~~LekQL~E~n~kLk~EsE~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r 85 (168)
T 3o0z_A 6 EKLSQLQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDR 85 (168)
T ss_dssp ----CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 88899999999999999986789999998899999889989999789999999999889999999999999999999888
Q ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH----HHHHHHHHHHH
Q ss_conf 99887420212889999999999999999999999999999999994077799----99999999999
Q 002541 630 KEAREKTVELPKQLQVAAQEADQAKSLAQAAGEELHKAKEEAEQAKAGASTIE----SRLTAARKEIE 693 (910)
Q Consensus 630 eeare~~~eL~~eLqqls~EaEeAKkeae~~e~EL~klkeEaE~aKaeI~taE----~rL~aa~kElE 693 (910)
......+.+|...+..+..|++..+....-+..+...+.+..-....+-..++ .+|.+++..|+
T Consensus 86 ~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~eid~~~eLKalQ~~~e 153 (168)
T 3o0z_A 86 GHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLEIDLNYKLKSLQQRLE 153 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 77778999999999999999999999899999999999999899998997404788777999898999
No 9
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=1.00 E-value=1 Score=29.50 Aligned_cols=138 Identities=15% Similarity=0.196 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999998999998999999999999999999999999999998555899984999999889999999988999
Q 002541 552 VASAKKELEEVKLNIEKATAEVNCLKVAATSLQSELEREKSALAAIRQREGMASVAVASLEAELDRTRSEIALVQMKEKE 631 (910)
Q Consensus 552 L~s~kkELeE~K~~Leka~eEi~sL~~~vesLrsELek~K~ELe~lkeke~~a~~eI~sL~eELerlksELe~lkakeee 631 (910)
+..+..+|.++...-.....++.. +-.+|+.+..+...+...+..|..+|..+-..+..+...+.+
T Consensus 2 ~~~lE~qlkeaae~ad~KyeEvaR--------------~E~dLEraEERae~aE~k~~eLEeeL~~v~~nlKsLE~seek 67 (155)
T 2efr_A 2 MKQLEDKVEELLSKNYHLENEVAR--------------LKKLLERAEERAELSEGKSAELEEELKTVTNNLKSLEAQAEK 67 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
T ss_conf 777899999999985877899998--------------987887899999999998999999999887721030334567
Q ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8874202128899999999999999999999999999999999940777999999999999999998999999999865
Q 002541 632 AREKTVELPKQLQVAAQEADQAKSLAQAAGEELHKAKEEAEQAKAGASTIESRLTAARKEIEAARASEKLALAAIKALQ 710 (910)
Q Consensus 632 are~~~eL~~eLqqls~EaEeAKkeae~~e~EL~klkeEaE~aKaeI~taE~rL~aa~kElEAAKAsEa~Ala~lkaL~ 710 (910)
+..........+..+...+.+|...++.+...+.++..+++.+--.+.....++.....++.. ++..|..++
T Consensus 68 asqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~-------tl~el~~~~ 139 (155)
T 2efr_A 68 YSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQ-------LEDKVEELL 139 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHCC
T ss_conf 899899999999999999999999899999789999989999999999999989999999999-------999998646
No 10
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=1.00 E-value=1 Score=25.59 Aligned_cols=141 Identities=15% Similarity=0.151 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 47999999999999999998999998999999999999999999999999999998555899984999999889999999
Q 002541 546 TDIQAAVASAKKELEEVKLNIEKATAEVNCLKVAATSLQSELEREKSALAAIRQREGMASVAVASLEAELDRTRSEIALV 625 (910)
Q Consensus 546 ~~l~esL~s~kkELeE~K~~Leka~eEi~sL~~~vesLrsELek~K~ELe~lkeke~~a~~eI~sL~eELerlksELe~l 625 (910)
.+..+.+.--+..+..++..+..+..++...+.....|..+|+. +|..+..+.......+..|..++...+.++...
T Consensus 6 ~s~~ee~~ywk~~~~~~~q~~~~le~El~EFqesSrELE~ELE~---eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~ 82 (189)
T 2v71_A 6 SSLKEETAYWKELSMKYKQSFQEARDELVEFQEGSRELEAELEA---QLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQ 82 (189)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98899999999999999999999999999999989999999999---999999889999999998999999999999999
Q ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
Q ss_conf 9889998874202128899999999999999999999999999999999940777999999999999
Q 002541 626 QMKEKEAREKTVELPKQLQVAAQEADQAKSLAQAAGEELHKAKEEAEQAKAGASTIESRLTAARKEI 692 (910)
Q Consensus 626 kakeeeare~~~eL~~eLqqls~EaEeAKkeae~~e~EL~klkeEaE~aKaeI~taE~rL~aa~kEl 692 (910)
.. .+...+..|...+..+.......+..+..++....++....-.+-..+.+++.+|..+....
T Consensus 83 ~~---e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~ 146 (189)
T 2v71_A 83 YA---QSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERN 146 (189)
T ss_dssp HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 88---89999999999999999999999999999999712888999899965999998988999999
Done!