Query 002541
Match_columns 910
No_of_seqs 273 out of 422
Neff 5.2
Searched_HMMs 13730
Date Tue Mar 26 15:48:15 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002541.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H1_1262-1266//hhsearch_scop/002541hhsearch_scop
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1vqra_ a.211.1.3 (A:) Hypothe 6.5 51 0.0037 7.2 1.8 16 258-273 71-86 (286)
2 d1wgya_ d.15.1.5 (A:) Rap guan 3.7 1E+02 0.0074 5.1 1.4 57 111-169 3-60 (104)
3 d2cq1a1 d.58.7.1 (A:51-138) Po 3.5 1.1E+02 0.008 4.9 0.6 26 251-276 14-39 (88)
4 d2i52a1 d.316.1.1 (A:1-120) Hy 2.7 1.5E+02 0.011 4.0 0.0 11 222-232 31-41 (120)
5 d1fxkc_ a.2.5.1 (C:) Prefoldin 2.4 1.8E+02 0.013 3.5 11.5 117 671-787 3-132 (133)
6 d2cpza1 d.58.7.1 (A:383-484) C 2.3 1.8E+02 0.013 3.5 3.4 48 226-276 2-49 (102)
7 d1wg4a_ d.58.7.1 (A:) Splicing 2.3 1.8E+02 0.013 3.5 2.7 46 225-276 1-46 (98)
8 d1fxka_ a.2.5.1 (A:) Prefoldin 2.3 1.8E+02 0.013 3.5 10.7 88 559-646 3-105 (107)
9 d2ieca1 d.316.1.1 (A:11-123) H 2.1 1.4E+02 0.01 4.2 -0.8 11 222-232 21-31 (113)
10 d1m72a_ c.17.1.1 (A:) Caspase- 1.9 2.2E+02 0.016 2.9 2.7 47 222-268 1-50 (256)
No 1
>d1vqra_ a.211.1.3 (A:) Hypothetical protein Cj0248 {Campylobacter jejuni [TaxId: 197]}
Probab=6.49 E-value=51 Score=7.16 Aligned_cols=16 Identities=13% Similarity=0.252 Sum_probs=13.6
Q ss_pred CCCCHHHHHHHCCCCC
Q ss_conf 8633899997208732
Q 002541 258 PFESVKEVVSKFGGIV 273 (910)
Q Consensus 258 Pf~SVK~AvslFGe~v 273 (910)
|+.||+.||++.|-..
T Consensus 71 ~i~si~~Av~~LG~~~ 86 (286)
T d1vqra_ 71 EITTINQVITLLGVGN 86 (286)
T ss_dssp CCCSHHHHHHHHCHHH
T ss_pred CCCCHHHHHHHHHHHH
T ss_conf 9899999999876899
No 2
>d1wgya_ d.15.1.5 (A:) Rap guanine nucleotide exchange factor 5, RapGEF5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.71 E-value=1e+02 Score=5.13 Aligned_cols=57 Identities=21% Similarity=0.258 Sum_probs=25.5
Q ss_pred CCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCC
Q ss_conf 34788744555335-898545789975335888765577655678820000121048987
Q 002541 111 SQDDGSVIDSHVHT-DNSDIPSVSSPQVHDSRDDQRIEPSDKLALPHTELASIAVRAPGT 169 (910)
Q Consensus 111 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (910)
+-.+++.+.-+||. ||++...-.. +..+-.+..-.-.+.+..+.++|.-++|.+.|-
T Consensus 3 s~ss~dei~~~VY~~Dhsy~tlr~~--v~~sa~eI~~~vaeKl~~~~e~L~LV~V~SsGE 60 (104)
T d1wgya_ 3 SGSSGEEIFCHVYITEHSYVSVKAK--VSSIAQEILKVVAEKIQYAEEDLALVAITFSGE 60 (104)
T ss_dssp CCCCSSCCCEEEECSSSCEEEECCC--TTCBSHHHHHHHHHHHTSCGGGEEEEEECSSCC
T ss_pred CCCCCCEEEEEEEECCCCEEEEEEE--CCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCC
T ss_conf 8888882789999347847999960--347099999999998479977369999865895
No 3
>d2cq1a1 d.58.7.1 (A:51-138) Polypyrimidine tract-binding protein 2, PTBP2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.47 E-value=1.1e+02 Score=4.89 Aligned_cols=26 Identities=12% Similarity=0.069 Sum_probs=14.2
Q ss_pred CCCCCCCCCCCHHHHHHHCCCCCCCC
Q ss_conf 33446898633899997208732233
Q 002541 251 GLIDTTAPFESVKEVVSKFGGIVDWK 276 (910)
Q Consensus 251 ~eIDT~aPf~SVK~AvslFGe~v~~K 276 (910)
|.|+....-+-++..++.||.+...+
T Consensus 14 ~nLp~~~t~~~L~~~f~~~G~i~~v~ 39 (88)
T d2cq1a1 14 RKLPGEVTETEVIALGLPFGKVTNIL 39 (88)
T ss_dssp ESCCTTCCHHHHHHTTTTTSCEEEEE
T ss_pred ECCCCCCCHHHHHHHHHCCCCCCCCC
T ss_conf 67998888999998875024222200
No 4
>d2i52a1 d.316.1.1 (A:1-120) Hypothetical protein PTO0218 {Picrophilus torridus [TaxId: 82076]}
Probab=2.68 E-value=1.5e+02 Score=3.99 Aligned_cols=11 Identities=18% Similarity=0.202 Sum_probs=0.0
Q ss_pred CCCCCCCCCCC
Q ss_conf 44699877899
Q 002541 222 HVFGSPKQFGS 232 (910)
Q Consensus 222 ~~~~~~~~~~~ 232 (910)
||+|+|.+-.+
T Consensus 31 QFvGtPVs~~s 41 (120)
T d2i52a1 31 QYTGIPVNSEN 41 (120)
T ss_dssp HHTTCEECTTT
T ss_pred EECCCCCCHHH
T ss_conf 32166338300
No 5
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=2.37 E-value=1.8e+02 Score=3.55 Aligned_cols=117 Identities=13% Similarity=0.107 Sum_probs=0.0
Q ss_pred HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-------------CCCCCCCCCCHHHHHHH
Q ss_conf 99999407779999999999999999989999999998655433103578-------------89999631106753897
Q 002541 671 AEQAKAGASTIESRLTAARKEIEAARASEKLALAAIKALQESESAQRTDD-------------VDSPTGVTLSLEEYYEL 737 (910)
Q Consensus 671 aE~aKaeI~taE~rL~aa~kElEAAKAsEa~Ala~lkaL~e~~~~~~~~~-------------~~~~~~Itls~eEy~~L 737 (910)
.+.....+...+..+......+...+..-..-...+..|..-........ ...++.|.+.+.-.++.
T Consensus 3 L~eL~~~~~~l~~~l~~l~~~i~~l~~~~~e~~~~~~~L~~l~~~~~~e~lvplg~~~~v~~~i~~~~~vlV~lG~g~~v 82 (133)
T d1fxkc_ 3 LAEIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTLSDIQGKDGSETLVPVGAGSFIKAELKDTSEVIMSVGAGVAI 82 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTCEEEEEEETTEEEEEECCSTTEEEEEEETTEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCEEEEEEECCCCCEEEEECCCEEE
T ss_conf 89999999999999999999999999999999999999997622789707997478538887863898648883598235
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 78899999999689999997699999999999999999999999999999
Q 002541 738 SKRAHEAEEQANMRVVAAISQIEVAKASELRSLERLEEVNKEIATRKEAL 787 (910)
Q Consensus 738 ~~ka~Eaee~a~~kV~~a~aqvE~akese~~~l~KLe~~~~Eie~~k~al 787 (910)
-+...++.+..+.|+.....+++.....-......+..+..++++.-.++
T Consensus 83 E~~~~eA~~~l~~ri~~l~~~~~~l~~~~~~~~~~i~~l~~~~~~l~~a~ 132 (133)
T d1fxkc_ 83 KKNFEDAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEELLAAV 132 (133)
T ss_dssp EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 50599999999999999999999999999999999999999999998730
No 6
>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding protein 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.33 E-value=1.8e+02 Score=3.50 Aligned_cols=48 Identities=15% Similarity=0.161 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCC
Q ss_conf 987789997678896543434444433446898633899997208732233
Q 002541 226 SPKQFGSPRYGISSPKLAKQGEMKRGLIDTTAPFESVKEVVSKFGGIVDWK 276 (910)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~r~eIDT~aPf~SVK~AvslFGe~v~~K 276 (910)
+-.+.|++-..-+.|+..+ .+.+.|.....-+-++..++.||.++.++
T Consensus 2 s~~~~~~~~~~~~~p~~~~---l~V~nLp~~~te~~l~~~F~~~G~i~~~~ 49 (102)
T d2cpza1 2 TQQSIGAAGSQKEGPEGAN---LFIYHLPQEFGDQDLLQMFMPFGNVVSAK 49 (102)
T ss_dssp CCCCCCCBSCCCCCSTTCC---EEEESCCSSCCHHHHHHHHGGGSCCSEEE
T ss_pred CCCCCCCCCCCCCCCCCCE---EEEECCCCCCCHHHHHHHHHHHCCCCCCC
T ss_conf 8566788999987999999---99959999999999999997633454321
No 7
>d1wg4a_ d.58.7.1 (A:) Splicing factor, arginine/serine-rich 9 (SFRS9) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=2.32 E-value=1.8e+02 Score=3.48 Aligned_cols=46 Identities=15% Similarity=0.255 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCC
Q ss_conf 9987789997678896543434444433446898633899997208732233
Q 002541 225 GSPKQFGSPRYGISSPKLAKQGEMKRGLIDTTAPFESVKEVVSKFGGIVDWK 276 (910)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~r~eIDT~aPf~SVK~AvslFGe~v~~K 276 (910)
|+.-+.+.| |+......++.+.|.-..-.+.++..++.||.+...+
T Consensus 1 gssg~~~gp------~~~~~~~~i~V~Nlp~~~~~~~L~~~F~~~G~v~~~~ 46 (98)
T d1wg4a_ 1 GSSGSSGGP------PTRRSDFRVLVSGLPPSGSWQDLKDHMREAGDVCYAD 46 (98)
T ss_dssp CCCCCSSCC------CCCSCSCEEEEECCCSSCCHHHHHHHHTTSSCEEEEE
T ss_pred CCCCCCCCC------CCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCC
T ss_conf 988888987------7999888899977999998999999997522343200
No 8
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=2.31 E-value=1.8e+02 Score=3.46 Aligned_cols=88 Identities=11% Similarity=0.206 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999998999998999999999999999999999999999998---------------5558999849999998899999
Q 002541 559 LEEVKLNIEKATAEVNCLKVAATSLQSELEREKSALAAIRQRE---------------GMASVAVASLEAELDRTRSEIA 623 (910)
Q Consensus 559 LeE~K~~Leka~eEi~sL~~~vesLrsELek~K~ELe~lkeke---------------~~a~~eI~sL~eELerlksELe 623 (910)
+.+.-..+.....++..+......|..++......+..+..-. ......+..|...+.-+..++.
T Consensus 3 lqe~~~~~q~lq~el~~~~~q~~~le~q~~E~~~vl~eL~~l~~d~~vyk~vG~vLv~~~~~e~~~~l~~~~e~l~~~i~ 82 (107)
T d1fxka_ 3 VQHQLAQFQQLQQQAQAISVQKQTVEMQINETQKALEELSRAADDAEVYKSSGNILIRVAKDELTEELQEKLETLQLREK 82 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 89999999999999999999999999999999999999871885328999824345307399999999999999999999
Q ss_pred HHHHHHHHHHHHHHCCHHHHHHH
Q ss_conf 99988999887420212889999
Q 002541 624 LVQMKEKEAREKTVELPKQLQVA 646 (910)
Q Consensus 624 ~lkakeeeare~~~eL~~eLqql 646 (910)
.+...+......+.++...++++
T Consensus 83 ~l~~q~~~l~~~l~~~~~~l~~~ 105 (107)
T d1fxka_ 83 TIERQEERVMKKLQEMQVNIQEA 105 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999997
No 9
>d2ieca1 d.316.1.1 (A:11-123) Hypothetical protein MK0786 {Methanopyrus kandleri [TaxId: 2320]}
Probab=2.09 E-value=1.4e+02 Score=4.16 Aligned_cols=11 Identities=27% Similarity=0.576 Sum_probs=0.0
Q ss_pred CCCCCCCCCCC
Q ss_conf 44699877899
Q 002541 222 HVFGSPKQFGS 232 (910)
Q Consensus 222 ~~~~~~~~~~~ 232 (910)
||+|+|.+-.+
T Consensus 21 QF~GtPVs~~s 31 (113)
T d2ieca1 21 QFCGTPVSPGT 31 (113)
T ss_dssp HHTTCEECGGG
T ss_pred EECCCCCCCCC
T ss_conf 20276328301
No 10
>d1m72a_ c.17.1.1 (A:) Caspase-1 {Fall armyworm (Spodoptera frugiperda) [TaxId: 7108]}
Probab=1.95 E-value=2.2e+02 Score=2.88 Aligned_cols=47 Identities=11% Similarity=0.066 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---CCCCCCHHHHHHH
Q ss_conf 4469987789997678896543434444433446---8986338999972
Q 002541 222 HVFGSPKQFGSPRYGISSPKLAKQGEMKRGLIDT---TAPFESVKEVVSK 268 (910)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~eIDT---~aPf~SVK~Avsl 268 (910)
++.-.|..-+.|.|..++.|++.+++++....+. ...-++.++|-.+
T Consensus 1 ~~~~~~~~~~~~~Y~m~~~~rG~aLIInN~~f~~~~~~~r~g~~~Da~~l 50 (256)
T d1m72a_ 1 RVARMPVDRNAPYYNMNHKHRGMAIIFNHEHFDIHSLKSRTGTNVDSDNL 50 (256)
T ss_dssp CEEECCSCTTCSBCCCCSSEEEEEEEEECCCCSSTTCCCCTTHHHHHHHH
T ss_pred CCCCCCCCCCCCEECCCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHH
T ss_conf 96516789998981279997638999867766878888998849999999
Done!