BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002542
(910 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1O7D|A Chain A, The Structure Of The Bovine Lysosomal A-Mannosidase
Suggests A Novel Mechanism For Low Ph Activation
Length = 298
Score = 294 bits (753), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 149/298 (50%), Positives = 191/298 (64%), Gaps = 5/298 (1%)
Query: 29 YNTSQGIVPGKLNVHLVAHTHDDVGWLKTVDQYYVGSNNSIQGACVQNVLDSVIPELLAD 88
Y T + P LNVHLV HTHDDVGWLKTVDQY+ G N+IQ A VQ +LDSVI LLA+
Sbjct: 3 YKTCPKVKPDMLNVHLVPHTHDDVGWLKTVDQYFYGIYNNIQPAGVQYILDSVISSLLAN 62
Query: 89 KNRKFIYVEQAFFQRWWDEQSEAMQHEVKQLVGSGQLEFINGGMCMHDEAVTHYIDMIDQ 148
R+FIYVE AFF RWW +Q+ A Q V++LV G+LEF NGG M+DEA THY +IDQ
Sbjct: 63 PTRRFIYVEIAFFSRWWRQQTNATQKIVRELVRQGRLEFANGGWVMNDEATTHYGAIIDQ 122
Query: 149 TTLGHRFIKNEFGV--TPRIGWQIDPFGHSAVQAYLLGSEVGFDSFFYGRIDYQDRAKRK 206
TLG RF++ FG PR+ W IDPFGHS QA L +++GFD FF+GR+DYQD+ RK
Sbjct: 123 MTLGLRFLEETFGSDGRPRVAWHIDPFGHSREQASLF-AQMGFDGFFFGRLDYQDKKVRK 181
Query: 207 NEKSLEVVWQGSRSLG-SSAQIFAGAFPENYEPPPGGFYFEVNDKYPIIQDNIKLFDYNV 265
+E VW+ S SL +A +F P Y PP G + + P+++D + +YN
Sbjct: 182 KTLQMEQVWRASTSLKPPTADLFTSVLPNMYNPPEGLCWDMLCADKPVVEDT-RSPEYNA 240
Query: 266 QDRVNDFVAAAISQANITRTNHIMWTMGTDFKYQYARTWFRQLDKFIHYVNMDGRVNA 323
++ V F+ A Q + RT H + TMG+DF+Y+ A TWF+ LDK I VN R N
Sbjct: 241 KELVRYFLKLATDQGKLYRTKHTVMTMGSDFQYENANTWFKNLDKLIQLVNAQQRANG 298
>pdb|1QWN|A Chain A, Golgi Alpha-Mannosidase Ii Covalent Intermediate Complex
With 5- Fluoro-Gulosyl-Fluoride
pdb|1R33|A Chain A, Golgi Alpha-Mannosidase Ii Complex With
5-Thio-D-Mannopyranosylamine
pdb|1R34|A Chain A, Golgi Alpha-Mannosidase Ii Complex With 5-Thio-D-
Mannopyranosylamidinium Salt
pdb|1TQS|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With Salacinol
pdb|1TQT|A Chain A, Golgi Alpha-mannosidase Ii In Complex With A Diastereomer
Of Salacinol
pdb|1TQU|A Chain A, Golgi Alpha-mannosidase Ii In Complex With The Salacinol
Analog Ghavamiol
pdb|1TQV|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With
Seleno-Salacinol (Blintol)
pdb|1TQW|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With A Diastereomer
Of Seleno- Salacinol
pdb|2ALW|A Chain A, Golgi Alpha-Mannosidase Ii Complex With Noeuromycin
pdb|2F7O|A Chain A, Golgi Alpha-mannosidase Ii Complex With Mannostatin A
pdb|2F7P|A Chain A, Golgi Alpha-Mannosidase Ii Complex With Benzyl-Mannostatin
A
pdb|2F18|A Chain A, Golgi Alpha-Mannosidase Ii Complex With
(2r,3r,4s)-2-({[(1r)-2-
Hydroxy-1-Phenylethyl]amino}methyl)pyrrolidine-3,4-Diol
pdb|2F1A|A Chain A, Golgi Alpha-Mannosidase Ii Complex With
(2r,3r,4s)-2-({[(1s)-2-
Hydroxy-1-Phenylethyl]amino}methyl)pyrrolidine-3,4-Diol
pdb|2F1B|A Chain A, Golgi Alpha-Mannosidase Ii Complex With
(2r,3r,4s,5r)-2-({[(1r)-2-
Hydroxy-1-Phenylethyl]amino}methyl)-5-Methylpyrrolidine-
3,4-Diol
pdb|2F7Q|A Chain A, Golgi Alpha-Mannosidase Ii Complex With
Aminocyclopentitetrol
pdb|2F7R|A Chain A, Golgi Alpha-Mannosidase Ii Complex With
Benzyl-Aminocyclopentitetrol
pdb|2FYV|A Chain A, Golgi Alpha-Mannosidase Ii Complex With An Amino-Salacinol
Carboxylate Analog
pdb|2OW6|A Chain A, Golgi Alpha-Mannosidase Ii Complex With
(1r,5s,6s,7r,8s)-1-
Thioniabicyclo[4.3.0]nonan-5,7,8-Triol Chloride
pdb|2OW7|A Chain A, Golgi Alpha-Mannosidase Ii Complex With (1r,6s,7r,8s)-1-
Thioniabicyclo[4.3.0]nonan-7,8-Diol Chloride
pdb|3BLB|A Chain A, Crystal Structure Of Golgi Mannosidase Ii In Complex With
Swainsonine At 1.3 Angstrom Resolution
pdb|3BUB|A Chain A, Golgi Alpha-mannosidase Ii With An Empty Active Site
pdb|3DDF|A Chain A, Golgi Mannosidase Ii Complex With
(3r,4r,5r)-3,4-Dihydroxy-5-({[(1r)- 2-Hydroxy-1
Phenylethyl]amino}methyl) Pyrrolidin-2-One
pdb|3DDG|A Chain A, Golgi Mannosidase Ii Complex With
(3r,4r,5r)-3,4-Dihydroxy-5-({[(1r)- 2-Hydroxy-1
Phenylethyl]amino}methyl) Methylpyrrolidin-2-One
pdb|3D4Y|A Chain A, Golgi Mannosidase Ii Complex With Mannoimidazole
pdb|3D4Z|A Chain A, Golgi Mannosidase Ii Complex With Gluco-Imidazole
pdb|3D50|A Chain A, Golgi Mannosidase Ii Complex With
N-Octyl-6-Epi-Valienamine
pdb|3D51|A Chain A, Golgi Mannosidase Ii Complex With Gluco-Hydroxyiminolactam
pdb|3D52|A Chain A, Golgi Mannosidase Ii Complex With An N-Aryl Carbamate
Derivative Of Gluco-Hydroxyiminolactam
pdb|3DX0|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With Mannostatin A
At Ph 5.75
pdb|3DX1|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With Mannostatin
Analog (1s,2s, 3r,4r)-4-Aminocyclopentane-1,2,3-Triol
pdb|3DX2|A Chain A, Golgi Mannosidase Ii Complex With Mannostatin B
pdb|3DX4|A Chain A, Golgi Alpha-mannosidase Ii In Complex With Mannostatin
Analog (1r,2r,
3r,4s,5r)-4-amino-5-methoxycyclopentane-1,2,3-triol
pdb|3EJP|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With 5-Substituted
Swainsonine Analog:
(5r)-5-[2'-Oxo-2'-(Phenyl)ethyl]-Swainsonine
pdb|3EJQ|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With 5-Substitued
Swainsonine Analog:
(5r)-5-[2'-Oxo-2'-(4-Methylphenyl)ethyl]-Swainsonine
pdb|3EJR|A Chain A, Golgi Alpha-mannosidase Ii In Complex With 5-substitued
Swainsonine Analog:
(5r)-5-[2'-oxo-2'-(4-tert-butylphenyl)ethyl]-swainsonine
pdb|3EJS|A Chain A, Golgi Alpha-mannosidase Ii In Complex With 5-substituted
Swainsonine Analog:
(5s)-5-[2'-(4-tert-butylphenyl)ethyl]-swainsonine
pdb|3EJT|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With 5-Substituted
Swainsonine
Analog:(5r)-5-[2'-(4-Tert-Butylphenyl)ethyl]-Swainsonine
pdb|3EJU|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With 5-Substituted
Swainsonine
Analog:(5s)-5-[2'-Oxo-2'-(4-Tert-Butylphenyl)ethyl]-
Swainsonine
Length = 1045
Score = 284 bits (727), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 229/848 (27%), Positives = 380/848 (44%), Gaps = 90/848 (10%)
Query: 39 KLNVHLVAHTHDDVGWLKTVDQYYVGSNNSIQGACVQNVLDSVIPELLADKNRKFIYVEQ 98
KL V +V H+H+D GW++T ++YY I ++++ D+ PE+ KFI+ E
Sbjct: 80 KLKVFVVPHSHNDPGWIQTFEEYYQHDTKHILSNALRHLHDN--PEM------KFIWAEI 131
Query: 99 AFFQRWWDEQSEAMQHEVKQLVGSGQLEFINGGMCMHDEAVTHYIDMIDQTTLGHRFIKN 158
++F R++ + E + ++K +V +GQLEF+ GG M DEA +H+ +++ Q T G ++K
Sbjct: 132 SYFARFYHDLGENKKLQMKSIVKNGQLEFVTGGWVMPDEANSHWRNVLLQLTEGQTWLKQ 191
Query: 159 EFGVTPRIGWQIDPFGHSAVQAYLLGSEVGFDSFFYGRIDYQDRAKRKNEKSLEVVW--- 215
VTP W IDPFGHS Y+L + GF + R Y + + ++ LE +W
Sbjct: 192 FMNVTPTASWAIDPFGHSPTMPYIL-QKSGFKNMLIQRTHYSVKKELAQQRQLEFLWRQI 250
Query: 216 ---QGSRSLGSSAQIF-AGAFPENYEPPP-----------GGFYFEVNDKYPIIQDNIKL 260
+G +L + F + P P P G F K P +
Sbjct: 251 WDNKGDTALFTHMMPFYSYDIPHTCGPDPKVCCQFDFKRMGSFGLSCPWKVP----PRTI 306
Query: 261 FDYNVQDRVNDFVAAAISQANITRTNHIMWTMGTDFKYQYARTWFRQ---LDKFIHYVNM 317
D NV R + V +A + RTN ++ +G DF+++ W Q ++ ++N
Sbjct: 307 SDQNVAARSDLLVDQWKKKAELYRTNVLLIPLGDDFRFKQNTEWDVQRVNYERLFEHINS 366
Query: 318 DGRVN--ALYSTPSIYTDAKY----ASNESWPLKTDDFFPYADRAHAYWTGYFSSRPALK 371
N A + T Y DA + A +P + DFF YADR+ YW+GY++SRP K
Sbjct: 367 QAHFNVQAQFGTLQEYFDAVHQAERAGQAEFPTLSGDFFTYADRSDNYWSGYYTSRPYHK 426
Query: 372 RYVKVMSGYYLAARQLEFYI---GRSETGHNTDSLADALAIAQHHDAVTGTEKQHVANDY 428
R +V+ Y AA L + G + + L++ QHHD +TGT K HV DY
Sbjct: 427 RMDRVLMHYVRAAEMLSAWHSWDGMARIEERLEQARRELSLFQHHDGITGTAKTHVVVDY 486
Query: 429 AKRLAIGYXXXXXXXXXXLACLVDSPSDNGCGRSTTRFQQCPLLNISYCPASEIDFSN-- 486
+R+ + L+ PS S + F L+ S P S ++ S
Sbjct: 487 EQRMQEALKACQMVMQQSVYRLLTKPSIYSPDFSFSYFT----LDDSRWPGSGVEDSRTT 542
Query: 487 ---GKNLV----IVIYNSLGWKREDIIRIPVANGDVTVFNSEGKIIESQLVPPADAFMDL 539
G++++ +V++N+L RE ++ V++ V+V + +E+Q+ P D
Sbjct: 543 IILGEDILPSKHVVMHNTLPHWREQLVDFYVSSPFVSVTDLANNPVEAQVSPVWSWHHDT 602
Query: 540 RDYYVRAYLGRNPMVPPKYWLAFPVSVPPLGFSTYTISSVKRGGGHSIRSSIQTFESSDK 599
+ KY + F VPP+G +TY ++ H+ +S +
Sbjct: 603 LTKTIHPQGSTT-----KYRIIFKARVPPMGLATYVLTISDSKPEHTSYAS-NLLLRKNP 656
Query: 600 STVEVGQGNLKLIFSSDKSKPINYINNKS-------------LVEESVEQSYSFYPAYNG 646
+++ +GQ + F + + N + L ++S F G
Sbjct: 657 TSLPLGQYPEDVKFGDPREISLRVGNGPTLAFSEQGLLKSIQLTQDSPHVPVHFKFLKYG 716
Query: 647 TNDKAPQNAGAYIFRPNGTFFIKSEGQVPLTVMRGPILDEVHQKINEWIYQVTRLYKGKE 706
+GAY+F PNG GQ + V +G + V + ++Q T + G
Sbjct: 717 VRSHG-DRSGAYLFLPNGPASPVELGQPVVLVTKGKLESSVSVGLPSVVHQ-TIMRGGAP 774
Query: 707 HVEVEFIVGPIPVDDGLGKEVVTHITSTLETNKTFYTDSNGRDFIKRIRDYRTDWDLEVN 766
+ +G + E+V + + +++ FYTD NG FIKR R +
Sbjct: 775 EIRNLVDIGSLD-----NTEIVMRLETHIDSGDIFYTDLNGLQFIKRRRLDKL------- 822
Query: 767 EPVAGNYYPINLGIYMQDVKKEFSLLVDRALGGSSIVDGEVELMLHRRLLLDDSRGVAEA 826
P+ NYYPI G++++D +LL + LGGSS+ GE+E+M RRL DD RG+ +
Sbjct: 823 -PLQANYYPIPSGMFIEDANTRLTLLTGQPLGGSSLASGELEIMQDRRLASDDERGLGQG 881
Query: 827 LNETDCVL 834
+ + VL
Sbjct: 882 VLDNKPVL 889
>pdb|3DX3|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With Mannostatin
Analog (1r,2r,
3s,4r,5r)-5-Aminocyclopentane-1,2,3,4-Tetraol
Length = 1045
Score = 284 bits (727), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 229/848 (27%), Positives = 380/848 (44%), Gaps = 90/848 (10%)
Query: 39 KLNVHLVAHTHDDVGWLKTVDQYYVGSNNSIQGACVQNVLDSVIPELLADKNRKFIYVEQ 98
KL V +V H+H+D GW++T ++YY I ++++ D+ PE+ KFI+ E
Sbjct: 80 KLKVFVVPHSHNDPGWIQTFEEYYQHDTKHILSNALRHLHDN--PEM------KFIWAEI 131
Query: 99 AFFQRWWDEQSEAMQHEVKQLVGSGQLEFINGGMCMHDEAVTHYIDMIDQTTLGHRFIKN 158
++F R++ + E + ++K +V +GQLEF+ GG M DEA +H+ +++ Q T G ++K
Sbjct: 132 SYFARFYHDLGENKKLQMKSIVKNGQLEFVTGGWVMPDEANSHWRNVLLQLTEGQTWLKQ 191
Query: 159 EFGVTPRIGWQIDPFGHSAVQAYLLGSEVGFDSFFYGRIDYQDRAKRKNEKSLEVVW--- 215
VTP W IDPFGHS Y+L + GF + R Y + + ++ LE +W
Sbjct: 192 FMNVTPTASWAIDPFGHSPTMPYIL-QKSGFKNMLIQRTHYSVKKELAQQRQLEFLWRQI 250
Query: 216 ---QGSRSLGSSAQIF-AGAFPENYEPPP-----------GGFYFEVNDKYPIIQDNIKL 260
+G +L + F + P P P G F K P +
Sbjct: 251 WDNKGDTALFTHMMPFYSYDIPHTCGPDPKVCCQFDFKRMGSFGLSCPWKVP----PRTI 306
Query: 261 FDYNVQDRVNDFVAAAISQANITRTNHIMWTMGTDFKYQYARTWFRQ---LDKFIHYVNM 317
D NV R + V +A + RTN ++ +G DF+++ W Q ++ ++N
Sbjct: 307 SDQNVAARSDLLVDQWKKKAELYRTNVLLIPLGDDFRFKQNTEWDVQRVNYERLFEHINS 366
Query: 318 DGRVN--ALYSTPSIYTDAKY----ASNESWPLKTDDFFPYADRAHAYWTGYFSSRPALK 371
N A + T Y DA + A +P + DFF YADR+ YW+GY++SRP K
Sbjct: 367 QAHFNVQAQFGTLQEYFDAVHQAERAGQAEFPTLSGDFFTYADRSDNYWSGYYTSRPYHK 426
Query: 372 RYVKVMSGYYLAARQLEFYI---GRSETGHNTDSLADALAIAQHHDAVTGTEKQHVANDY 428
R +V+ Y AA L + G + + L++ QHHD +TGT K HV DY
Sbjct: 427 RMDRVLMHYVRAAEMLSAWHSWDGMARIEERLEQARRELSLFQHHDGITGTAKTHVVVDY 486
Query: 429 AKRLAIGYXXXXXXXXXXLACLVDSPSDNGCGRSTTRFQQCPLLNISYCPASEIDFSN-- 486
+R+ + L+ PS S + F L+ S P S ++ S
Sbjct: 487 EQRMQEALKACQMVMQQSVYRLLTKPSIYSPDFSFSYFT----LDDSRWPGSGVEDSRTT 542
Query: 487 ---GKNLV----IVIYNSLGWKREDIIRIPVANGDVTVFNSEGKIIESQLVPPADAFMDL 539
G++++ +V++N+L RE ++ V++ V+V + +E+Q+ P D
Sbjct: 543 IILGEDILPSKHVVMHNTLPHWREQLVDFYVSSPFVSVTDLANNPVEAQVSPVWSWHHDT 602
Query: 540 RDYYVRAYLGRNPMVPPKYWLAFPVSVPPLGFSTYTISSVKRGGGHSIRSSIQTFESSDK 599
+ KY + F VPP+G +TY ++ H+ +S +
Sbjct: 603 LTKTIHPQGSTT-----KYRIIFKARVPPMGLATYVLTISDSKPEHTSYAS-NLLLRKNP 656
Query: 600 STVEVGQGNLKLIFSSDKSKPINYINNKS-------------LVEESVEQSYSFYPAYNG 646
+++ +GQ + F + + N + L ++S F G
Sbjct: 657 TSLPLGQYPEDVKFGDPREISLRVGNGPTLAFSEQGLLKSIQLTQDSPHVPVHFKFLKYG 716
Query: 647 TNDKAPQNAGAYIFRPNGTFFIKSEGQVPLTVMRGPILDEVHQKINEWIYQVTRLYKGKE 706
+GAY+F PNG GQ + V +G + V + ++Q T + G
Sbjct: 717 VRSHG-DRSGAYLFLPNGPASPVELGQPVVLVTKGKLESSVSVGLPSVVHQ-TIMRGGAP 774
Query: 707 HVEVEFIVGPIPVDDGLGKEVVTHITSTLETNKTFYTDSNGRDFIKRIRDYRTDWDLEVN 766
+ +G + E+V + + +++ FYTD NG FIKR R +
Sbjct: 775 EIRNLVDIGSLD-----NTEIVMRLETHIDSGDIFYTDLNGLQFIKRRRLDKL------- 822
Query: 767 EPVAGNYYPINLGIYMQDVKKEFSLLVDRALGGSSIVDGEVELMLHRRLLLDDSRGVAEA 826
P+ NYYPI G++++D +LL + LGGSS+ GE+E+M RRL DD RG+ +
Sbjct: 823 -PLQANYYPIPSGMFIEDANTRLTLLTGQPLGGSSLASGELEIMQDRRLASDDERGLGQG 881
Query: 827 LNETDCVL 834
+ + VL
Sbjct: 882 VLDNKPVL 889
>pdb|1PS3|A Chain A, Golgi Alpha-mannosidase Ii In Complex With Kifunensine
Length = 1045
Score = 284 bits (726), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 229/848 (27%), Positives = 380/848 (44%), Gaps = 90/848 (10%)
Query: 39 KLNVHLVAHTHDDVGWLKTVDQYYVGSNNSIQGACVQNVLDSVIPELLADKNRKFIYVEQ 98
KL V +V H+H+D GW++T ++YY I ++++ D+ PE+ KFI+ E
Sbjct: 80 KLKVFVVPHSHNDPGWIQTFEEYYQHDTKHILSNALRHLHDN--PEM------KFIWAEI 131
Query: 99 AFFQRWWDEQSEAMQHEVKQLVGSGQLEFINGGMCMHDEAVTHYIDMIDQTTLGHRFIKN 158
++F R++ + E + ++K +V +GQLEF+ GG M DEA +H+ +++ Q T G ++K
Sbjct: 132 SYFARFYHDLGENKKLQMKSIVKNGQLEFVTGGWVMPDEANSHWRNVLLQLTEGQTWLKQ 191
Query: 159 EFGVTPRIGWQIDPFGHSAVQAYLLGSEVGFDSFFYGRIDYQDRAKRKNEKSLEVVW--- 215
VTP W IDPFGHS Y+L + GF + R Y + + ++ LE +W
Sbjct: 192 FMNVTPTASWAIDPFGHSPTMPYIL-QKSGFKNMLIQRTHYSVKKELAQQRQLEFLWRQI 250
Query: 216 ---QGSRSLGSSAQIF-AGAFPENYEPPP-----------GGFYFEVNDKYPIIQDNIKL 260
+G +L + F + P P P G F K P +
Sbjct: 251 WDNKGDTALFTHMMPFYSYDIPHTCGPDPKVCCQFDFKRMGSFGLSCPWKVP----PRTI 306
Query: 261 FDYNVQDRVNDFVAAAISQANITRTNHIMWTMGTDFKYQYARTWFRQ---LDKFIHYVNM 317
D NV R + V +A + RTN ++ +G DF+++ W Q ++ ++N
Sbjct: 307 SDQNVAARSDLLVDQWKKKAELYRTNVLLIPLGDDFRFKQNTEWDVQRVNYERLFEHINS 366
Query: 318 DGRVN--ALYSTPSIYTDAKY----ASNESWPLKTDDFFPYADRAHAYWTGYFSSRPALK 371
N A + T Y DA + A +P + DFF YADR+ YW+GY++SRP K
Sbjct: 367 QAHFNVQAQFGTLQEYFDAVHQAERAGQAEFPTLSGDFFTYADRSDNYWSGYYTSRPYHK 426
Query: 372 RYVKVMSGYYLAARQLEFYI---GRSETGHNTDSLADALAIAQHHDAVTGTEKQHVANDY 428
R +V+ Y AA L + G + + L++ QHHD +TGT K HV DY
Sbjct: 427 RMDRVLMHYVRAAEMLSAWHSWDGMARIEERLEQARRELSLFQHHDGITGTAKTHVVVDY 486
Query: 429 AKRLAIGYXXXXXXXXXXLACLVDSPSDNGCGRSTTRFQQCPLLNISYCPASEIDFSN-- 486
+R+ + L+ PS S + F L+ S P S ++ S
Sbjct: 487 EQRMQEALKACQMVMQQSVYRLLTKPSIYSPDFSFSYFT----LDDSRWPGSGVEDSRTT 542
Query: 487 ---GKNLV----IVIYNSLGWKREDIIRIPVANGDVTVFNSEGKIIESQLVPPADAFMDL 539
G++++ +V++N+L RE ++ V++ V+V + +E+Q+ P D
Sbjct: 543 IILGEDILPSKHVVMHNTLPHWREQLVDFYVSSPFVSVTDLANNPVEAQVSPVWSWHHDT 602
Query: 540 RDYYVRAYLGRNPMVPPKYWLAFPVSVPPLGFSTYTISSVKRGGGHSIRSSIQTFESSDK 599
+ KY + F VPP+G +TY ++ H+ +S +
Sbjct: 603 LTKTIHPQGSTT-----KYRIIFKARVPPMGLATYVLTISDSKPEHTSYAS-NLLLRKNP 656
Query: 600 STVEVGQGNLKLIFSSDKSKPINYINNKS-------------LVEESVEQSYSFYPAYNG 646
+++ +GQ + F + + N + L ++S F G
Sbjct: 657 TSLPLGQYPEDVKFGDPREISLRVGNGPTLAFSEQGLLKSIQLTQDSPHVPVHFKFLKYG 716
Query: 647 TNDKAPQNAGAYIFRPNGTFFIKSEGQVPLTVMRGPILDEVHQKINEWIYQVTRLYKGKE 706
+GAY+F PNG GQ + V +G + V + ++Q T + G
Sbjct: 717 VRSHG-DRSGAYLFLPNGPASPVELGQPVVLVTKGKLESSVSVGLPSVVHQ-TIMRGGAP 774
Query: 707 HVEVEFIVGPIPVDDGLGKEVVTHITSTLETNKTFYTDSNGRDFIKRIRDYRTDWDLEVN 766
+ +G + E+V + + +++ FYTD NG FIKR R +
Sbjct: 775 EIRNLVDIGSLD-----NTEIVMRLETHIDSGDIFYTDLNGLQFIKRRRLDKL------- 822
Query: 767 EPVAGNYYPINLGIYMQDVKKEFSLLVDRALGGSSIVDGEVELMLHRRLLLDDSRGVAEA 826
P+ NYYPI G++++D +LL + LGGSS+ GE+E+M RRL DD RG+ +
Sbjct: 823 -PLQANYYPIPSGMFIEDANTRLTLLTGQPLGGSSLASGELEIMQDRRLASDDERGLGQG 881
Query: 827 LNETDCVL 834
+ + VL
Sbjct: 882 VLDNKPVL 889
>pdb|1HXK|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With
Deoxymannojirimicin
pdb|1HWW|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With Swainsonine
Length = 1015
Score = 284 bits (726), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 229/848 (27%), Positives = 380/848 (44%), Gaps = 90/848 (10%)
Query: 39 KLNVHLVAHTHDDVGWLKTVDQYYVGSNNSIQGACVQNVLDSVIPELLADKNRKFIYVEQ 98
KL V +V H+H+D GW++T ++YY I ++++ D+ PE+ KFI+ E
Sbjct: 50 KLKVFVVPHSHNDPGWIQTFEEYYQHDTKHILSNALRHLHDN--PEM------KFIWAEI 101
Query: 99 AFFQRWWDEQSEAMQHEVKQLVGSGQLEFINGGMCMHDEAVTHYIDMIDQTTLGHRFIKN 158
++F R++ + E + ++K +V +GQLEF+ GG M DEA +H+ +++ Q T G ++K
Sbjct: 102 SYFARFYHDLGENKKLQMKSIVKNGQLEFVTGGWVMPDEANSHWRNVLLQLTEGQTWLKQ 161
Query: 159 EFGVTPRIGWQIDPFGHSAVQAYLLGSEVGFDSFFYGRIDYQDRAKRKNEKSLEVVW--- 215
VTP W IDPFGHS Y+L + GF + R Y + + ++ LE +W
Sbjct: 162 FMNVTPTASWAIDPFGHSPTMPYIL-QKSGFKNMLIQRTHYSVKKELAQQRQLEFLWRQI 220
Query: 216 ---QGSRSLGSSAQIF-AGAFPENYEPPP-----------GGFYFEVNDKYPIIQDNIKL 260
+G +L + F + P P P G F K P +
Sbjct: 221 WDNKGDTALFTHMMPFYSYDIPHTCGPDPKVCCQFDFKRMGSFGLSCPWKVP----PRTI 276
Query: 261 FDYNVQDRVNDFVAAAISQANITRTNHIMWTMGTDFKYQYARTWFRQ---LDKFIHYVNM 317
D NV R + V +A + RTN ++ +G DF+++ W Q ++ ++N
Sbjct: 277 SDQNVAARSDLLVDQWKKKAELYRTNVLLIPLGDDFRFKQNTEWDVQRVNYERLFEHINS 336
Query: 318 DGRVN--ALYSTPSIYTDAKY----ASNESWPLKTDDFFPYADRAHAYWTGYFSSRPALK 371
N A + T Y DA + A +P + DFF YADR+ YW+GY++SRP K
Sbjct: 337 QAHFNVQAQFGTLQEYFDAVHQAERAGQAEFPTLSGDFFTYADRSDNYWSGYYTSRPYHK 396
Query: 372 RYVKVMSGYYLAARQLEFYI---GRSETGHNTDSLADALAIAQHHDAVTGTEKQHVANDY 428
R +V+ Y AA L + G + + L++ QHHD +TGT K HV DY
Sbjct: 397 RMDRVLMHYVRAAEMLSAWHSWDGMARIEERLEQARRELSLFQHHDGITGTAKTHVVVDY 456
Query: 429 AKRLAIGYXXXXXXXXXXLACLVDSPSDNGCGRSTTRFQQCPLLNISYCPASEIDFSN-- 486
+R+ + L+ PS S + F L+ S P S ++ S
Sbjct: 457 EQRMQEALKACQMVMQQSVYRLLTKPSIYSPDFSFSYFT----LDDSRWPGSGVEDSRTT 512
Query: 487 ---GKNLV----IVIYNSLGWKREDIIRIPVANGDVTVFNSEGKIIESQLVPPADAFMDL 539
G++++ +V++N+L RE ++ V++ V+V + +E+Q+ P D
Sbjct: 513 IILGEDILPSKHVVMHNTLPHWREQLVDFYVSSPFVSVTDLANNPVEAQVSPVWSWHHDT 572
Query: 540 RDYYVRAYLGRNPMVPPKYWLAFPVSVPPLGFSTYTISSVKRGGGHSIRSSIQTFESSDK 599
+ KY + F VPP+G +TY ++ H+ +S +
Sbjct: 573 LTKTIHPQGSTT-----KYRIIFKARVPPMGLATYVLTISDSKPEHTSYAS-NLLLRKNP 626
Query: 600 STVEVGQGNLKLIFSSDKSKPINYINNKS-------------LVEESVEQSYSFYPAYNG 646
+++ +GQ + F + + N + L ++S F G
Sbjct: 627 TSLPLGQYPEDVKFGDPREISLRVGNGPTLAFSEQGLLKSIQLTQDSPHVPVHFKFLKYG 686
Query: 647 TNDKAPQNAGAYIFRPNGTFFIKSEGQVPLTVMRGPILDEVHQKINEWIYQVTRLYKGKE 706
+GAY+F PNG GQ + V +G + V + ++Q T + G
Sbjct: 687 VRSHG-DRSGAYLFLPNGPASPVELGQPVVLVTKGKLESSVSVGLPSVVHQ-TIMRGGAP 744
Query: 707 HVEVEFIVGPIPVDDGLGKEVVTHITSTLETNKTFYTDSNGRDFIKRIRDYRTDWDLEVN 766
+ +G + E+V + + +++ FYTD NG FIKR R +
Sbjct: 745 EIRNLVDIGSLD-----NTEIVMRLETHIDSGDIFYTDLNGLQFIKRRRLDKL------- 792
Query: 767 EPVAGNYYPINLGIYMQDVKKEFSLLVDRALGGSSIVDGEVELMLHRRLLLDDSRGVAEA 826
P+ NYYPI G++++D +LL + LGGSS+ GE+E+M RRL DD RG+ +
Sbjct: 793 -PLQANYYPIPSGMFIEDANTRLTLLTGQPLGGSSLASGELEIMQDRRLASDDERGLGQG 851
Query: 827 LNETDCVL 834
+ + VL
Sbjct: 852 VLDNKPVL 859
>pdb|1QWU|A Chain A, Golgi Alpha-Mannosidase Ii D341n Mutant Complex With
5-F-Guloside
pdb|1QX1|A Chain A, Golgi Alpha-Mannosidase Ii D341n Mutant Complex With
2-F-Mannosyl-F
pdb|3BUP|A Chain A, Golgi Alpha-Mannosidase Ii D341n Acid-Base Catalyst Mutant
With Bound Mannose
Length = 1045
Score = 282 bits (722), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 228/848 (26%), Positives = 380/848 (44%), Gaps = 90/848 (10%)
Query: 39 KLNVHLVAHTHDDVGWLKTVDQYYVGSNNSIQGACVQNVLDSVIPELLADKNRKFIYVEQ 98
KL V +V H+H+D GW++T ++YY I ++++ D+ PE+ KFI+ E
Sbjct: 80 KLKVFVVPHSHNDPGWIQTFEEYYQHDTKHILSNALRHLHDN--PEM------KFIWAEI 131
Query: 99 AFFQRWWDEQSEAMQHEVKQLVGSGQLEFINGGMCMHDEAVTHYIDMIDQTTLGHRFIKN 158
++F R++ + E + ++K +V +GQLEF+ GG M DEA +H+ +++ Q T G ++K
Sbjct: 132 SYFARFYHDLGENKKLQMKSIVKNGQLEFVTGGWVMPDEANSHWRNVLLQLTEGQTWLKQ 191
Query: 159 EFGVTPRIGWQIDPFGHSAVQAYLLGSEVGFDSFFYGRIDYQDRAKRKNEKSLEVVW--- 215
VTP W IDPFGHS Y+L + GF + R Y + + ++ LE +W
Sbjct: 192 FMNVTPTASWAIDPFGHSPTMPYIL-QKSGFKNMLIQRTHYSVKKELAQQRQLEFLWRQI 250
Query: 216 ---QGSRSLGSSAQIF-AGAFPENYEPPP-----------GGFYFEVNDKYPIIQDNIKL 260
+G +L + F + P P P G F K P +
Sbjct: 251 WDNKGDTALFTHMMPFYSYDIPHTCGPDPKVCCQFDFKRMGSFGLSCPWKVP----PRTI 306
Query: 261 FDYNVQDRVNDFVAAAISQANITRTNHIMWTMGTDFKYQYARTWFRQ---LDKFIHYVNM 317
D NV R + V +A + RTN ++ +G +F+++ W Q ++ ++N
Sbjct: 307 SDQNVAARSDLLVDQWKKKAELYRTNVLLIPLGDNFRFKQNTEWDVQRVNYERLFEHINS 366
Query: 318 DGRVN--ALYSTPSIYTDAKY----ASNESWPLKTDDFFPYADRAHAYWTGYFSSRPALK 371
N A + T Y DA + A +P + DFF YADR+ YW+GY++SRP K
Sbjct: 367 QAHFNVQAQFGTLQEYFDAVHQAERAGQAEFPTLSGDFFTYADRSDNYWSGYYTSRPYHK 426
Query: 372 RYVKVMSGYYLAARQLEFYI---GRSETGHNTDSLADALAIAQHHDAVTGTEKQHVANDY 428
R +V+ Y AA L + G + + L++ QHHD +TGT K HV DY
Sbjct: 427 RMDRVLMHYVRAAEMLSAWHSWDGMARIEERLEQARRELSLFQHHDGITGTAKTHVVVDY 486
Query: 429 AKRLAIGYXXXXXXXXXXLACLVDSPSDNGCGRSTTRFQQCPLLNISYCPASEIDFSN-- 486
+R+ + L+ PS S + F L+ S P S ++ S
Sbjct: 487 EQRMQEALKACQMVMQQSVYRLLTKPSIYSPDFSFSYFT----LDDSRWPGSGVEDSRTT 542
Query: 487 ---GKNLV----IVIYNSLGWKREDIIRIPVANGDVTVFNSEGKIIESQLVPPADAFMDL 539
G++++ +V++N+L RE ++ V++ V+V + +E+Q+ P D
Sbjct: 543 IILGEDILPSKHVVMHNTLPHWREQLVDFYVSSPFVSVTDLANNPVEAQVSPVWSWHHDT 602
Query: 540 RDYYVRAYLGRNPMVPPKYWLAFPVSVPPLGFSTYTISSVKRGGGHSIRSSIQTFESSDK 599
+ KY + F VPP+G +TY ++ H+ +S +
Sbjct: 603 LTKTIHPQGSTT-----KYRIIFKARVPPMGLATYVLTISDSKPEHTSYAS-NLLLRKNP 656
Query: 600 STVEVGQGNLKLIFSSDKSKPINYINNKS-------------LVEESVEQSYSFYPAYNG 646
+++ +GQ + F + + N + L ++S F G
Sbjct: 657 TSLPLGQYPEDVKFGDPREISLRVGNGPTLAFSEQGLLKSIQLTQDSPHVPVHFKFLKYG 716
Query: 647 TNDKAPQNAGAYIFRPNGTFFIKSEGQVPLTVMRGPILDEVHQKINEWIYQVTRLYKGKE 706
+GAY+F PNG GQ + V +G + V + ++Q T + G
Sbjct: 717 VRSHG-DRSGAYLFLPNGPASPVELGQPVVLVTKGKLESSVSVGLPSVVHQ-TIMRGGAP 774
Query: 707 HVEVEFIVGPIPVDDGLGKEVVTHITSTLETNKTFYTDSNGRDFIKRIRDYRTDWDLEVN 766
+ +G + E+V + + +++ FYTD NG FIKR R +
Sbjct: 775 EIRNLVDIGSLD-----NTEIVMRLETHIDSGDIFYTDLNGLQFIKRRRLDKL------- 822
Query: 767 EPVAGNYYPINLGIYMQDVKKEFSLLVDRALGGSSIVDGEVELMLHRRLLLDDSRGVAEA 826
P+ NYYPI G++++D +LL + LGGSS+ GE+E+M RRL DD RG+ +
Sbjct: 823 -PLQANYYPIPSGMFIEDANTRLTLLTGQPLGGSSLASGELEIMQDRRLASDDERGLGQG 881
Query: 827 LNETDCVL 834
+ + VL
Sbjct: 882 VLDNKPVL 889
>pdb|3CV5|A Chain A, Golgi Mannosidase Ii D204a Catalytic Nucleophile Mutant
Complex With 3alpha,6alpha-Mannopentaose
pdb|3CZN|A Chain A, Golgi Alpha-Mannosidase Ii (D204a Nucleophile Mutant) In
Complex With Gnman5gn
pdb|3CZS|A Chain A, Golgi Alpha-Mannosidase Ii (D204a Nucleophile Mutant)
pdb|3BUD|A Chain A, Golgi Mannosidase Ii D204a Catalytic Nucleophile Mutant
With An Empty Active Site
pdb|3BUI|A Chain A, Golgi Mannosidase Ii D204a Catalytic Nucleophile Mutant
Complex With Tris
pdb|3BUQ|A Chain A, Golgi Alpha-Mannosidase Ii D204a Catalytic Nucleophile
Mutant With Bound Mannose.
pdb|3BVT|A Chain A, Golgi Mannosidase Ii D204a Catalytic Nucleophile Mutant
Complex With Methyl
(Alpha-D-Mannopyranosyl)-(1->3)-S-Alpha-D-
Mannopyranoside
pdb|3BVU|A Chain A, Golgi Mannosidase Ii D204a Catalytic Nucleophile Mutant
Complex With
Methyl(Alpha-D-Mannopyranosyl)-(1->3)-S-[(Alpha-D-
Mannopyranosyl)-(1- >6)]-Alpha-D-Mannopyranoside
pdb|3BVV|A Chain A, Golgi Mannosidase Ii D204a Catalytic Nucleophile Mutant
Complex With Methyl
Alpha-D-Mannopyranosyl-(1->3)-[6-Thio-
Alpha-D-Mannopyranosyl-(1->6)]-Beta-D-Mannopyranoside
pdb|3BVW|A Chain A, Golgi Mannosidase Ii D204a Catalytic Nucleophile Mutant
Complex With Methyl (2-Deoxy-2-Acetamido-Beta-D-
Glucopyranosyl)-(1->2)-Alpha-D-Mannopyranosyl- (1->3)-
[alpha-D-Mannopyranosyl-(1->6)-6-Thio-Alpha-D-
Mannopyranosyl- (1->6)]-Beta-D-Mannopyranoside
pdb|3BVX|A Chain A, Golgi Mannosidase Ii D204a Catalytic Nucleophile Mutant
Complex With Methyl (2-Deoxy-2-Acetamido-Beta-D-
Glucopyranosyl)-(1->2)-(Alpha-D-Mannopyranosyl)- (1->3)-
[(Alpha-D-Mannopyranosyl)-(1->6)-(Alpha-D-
Mannopyranosyl)- (1->6)]-Beta-D-Mannopyranoside
Length = 1045
Score = 281 bits (719), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 228/848 (26%), Positives = 379/848 (44%), Gaps = 90/848 (10%)
Query: 39 KLNVHLVAHTHDDVGWLKTVDQYYVGSNNSIQGACVQNVLDSVIPELLADKNRKFIYVEQ 98
KL V +V H+H+D GW++T ++YY I ++++ D+ PE+ KFI+ E
Sbjct: 80 KLKVFVVPHSHNDPGWIQTFEEYYQHDTKHILSNALRHLHDN--PEM------KFIWAEI 131
Query: 99 AFFQRWWDEQSEAMQHEVKQLVGSGQLEFINGGMCMHDEAVTHYIDMIDQTTLGHRFIKN 158
++F R++ + E + ++K +V +GQLEF+ GG M DEA +H+ +++ Q T G ++K
Sbjct: 132 SYFARFYHDLGENKKLQMKSIVKNGQLEFVTGGWVMPDEANSHWRNVLLQLTEGQTWLKQ 191
Query: 159 EFGVTPRIGWQIDPFGHSAVQAYLLGSEVGFDSFFYGRIDYQDRAKRKNEKSLEVVW--- 215
VTP W I PFGHS Y+L + GF + R Y + + ++ LE +W
Sbjct: 192 FMNVTPTASWAIAPFGHSPTMPYIL-QKSGFKNMLIQRTHYSVKKELAQQRQLEFLWRQI 250
Query: 216 ---QGSRSLGSSAQIF-AGAFPENYEPPP-----------GGFYFEVNDKYPIIQDNIKL 260
+G +L + F + P P P G F K P +
Sbjct: 251 WDNKGDTALFTHMMPFYSYDIPHTCGPDPKVCCQFDFKRMGSFGLSCPWKVP----PRTI 306
Query: 261 FDYNVQDRVNDFVAAAISQANITRTNHIMWTMGTDFKYQYARTWFRQ---LDKFIHYVNM 317
D NV R + V +A + RTN ++ +G DF+++ W Q ++ ++N
Sbjct: 307 SDQNVAARSDLLVDQWKKKAELYRTNVLLIPLGDDFRFKQNTEWDVQRVNYERLFEHINS 366
Query: 318 DGRVN--ALYSTPSIYTDAKY----ASNESWPLKTDDFFPYADRAHAYWTGYFSSRPALK 371
N A + T Y DA + A +P + DFF YADR+ YW+GY++SRP K
Sbjct: 367 QAHFNVQAQFGTLQEYFDAVHQAERAGQAEFPTLSGDFFTYADRSDNYWSGYYTSRPYHK 426
Query: 372 RYVKVMSGYYLAARQLEFYI---GRSETGHNTDSLADALAIAQHHDAVTGTEKQHVANDY 428
R +V+ Y AA L + G + + L++ QHHD +TGT K HV DY
Sbjct: 427 RMDRVLMHYVRAAEMLSAWHSWDGMARIEERLEQARRELSLFQHHDGITGTAKTHVVVDY 486
Query: 429 AKRLAIGYXXXXXXXXXXLACLVDSPSDNGCGRSTTRFQQCPLLNISYCPASEIDFSN-- 486
+R+ + L+ PS S + F L+ S P S ++ S
Sbjct: 487 EQRMQEALKACQMVMQQSVYRLLTKPSIYSPDFSFSYFT----LDDSRWPGSGVEDSRTT 542
Query: 487 ---GKNLV----IVIYNSLGWKREDIIRIPVANGDVTVFNSEGKIIESQLVPPADAFMDL 539
G++++ +V++N+L RE ++ V++ V+V + +E+Q+ P D
Sbjct: 543 IILGEDILPSKHVVMHNTLPHWREQLVDFYVSSPFVSVTDLANNPVEAQVSPVWSWHHDT 602
Query: 540 RDYYVRAYLGRNPMVPPKYWLAFPVSVPPLGFSTYTISSVKRGGGHSIRSSIQTFESSDK 599
+ KY + F VPP+G +TY ++ H+ +S +
Sbjct: 603 LTKTIHPQGSTT-----KYRIIFKARVPPMGLATYVLTISDSKPEHTSYAS-NLLLRKNP 656
Query: 600 STVEVGQGNLKLIFSSDKSKPINYINNKS-------------LVEESVEQSYSFYPAYNG 646
+++ +GQ + F + + N + L ++S F G
Sbjct: 657 TSLPLGQYPEDVKFGDPREISLRVGNGPTLAFSEQGLLKSIQLTQDSPHVPVHFKFLKYG 716
Query: 647 TNDKAPQNAGAYIFRPNGTFFIKSEGQVPLTVMRGPILDEVHQKINEWIYQVTRLYKGKE 706
+GAY+F PNG GQ + V +G + V + ++Q T + G
Sbjct: 717 VRSHG-DRSGAYLFLPNGPASPVELGQPVVLVTKGKLESSVSVGLPSVVHQ-TIMRGGAP 774
Query: 707 HVEVEFIVGPIPVDDGLGKEVVTHITSTLETNKTFYTDSNGRDFIKRIRDYRTDWDLEVN 766
+ +G + E+V + + +++ FYTD NG FIKR R +
Sbjct: 775 EIRNLVDIGSLD-----NTEIVMRLETHIDSGDIFYTDLNGLQFIKRRRLDKL------- 822
Query: 767 EPVAGNYYPINLGIYMQDVKKEFSLLVDRALGGSSIVDGEVELMLHRRLLLDDSRGVAEA 826
P+ NYYPI G++++D +LL + LGGSS+ GE+E+M RRL DD RG+ +
Sbjct: 823 -PLQANYYPIPSGMFIEDANTRLTLLTGQPLGGSSLASGELEIMQDRRLASDDERGLGQG 881
Query: 827 LNETDCVL 834
+ + VL
Sbjct: 882 VLDNKPVL 889
>pdb|1HTY|A Chain A, Golgi Alpha-Mannosidase Ii
Length = 1015
Score = 270 bits (691), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 230/848 (27%), Positives = 377/848 (44%), Gaps = 90/848 (10%)
Query: 39 KLNVHLVAHTHDDVGWLKTVDQYYVGSNNSIQGACVQNVLDSVIPELLADKNRKFIYVEQ 98
KL V +V H+H+D GW++T ++YY I ++++ D+ PE KFI+ E
Sbjct: 50 KLKVFVVPHSHNDPGWIQTFEEYYQHDTKHILSNALRHLHDN--PE------XKFIWAEI 101
Query: 99 AFFQRWWDEQSEAMQHEVKQLVGSGQLEFINGGMCMHDEAVTHYIDMIDQTTLGHRFIKN 158
++F R++ + E + + K +V +GQLEF+ GG DEA +H+ +++ Q T G ++K
Sbjct: 102 SYFARFYHDLGENKKLQXKSIVKNGQLEFVTGGWVXPDEANSHWRNVLLQLTEGQTWLKQ 161
Query: 159 EFGVTPRIGWQIDPFGHSAVQAYLLGSEVGFDSFFYGRIDYQDRAKRKNEKSLEVVW--- 215
VTP W IDPFGHS Y+L + GF + R Y + + ++ LE +W
Sbjct: 162 FXNVTPTASWAIDPFGHSPTXPYIL-QKSGFKNMLIQRTHYSVKKELAQQRQLEFLWRQI 220
Query: 216 ---QGSRSLGSSAQIF-AGAFPENYEPPP-----------GGFYFEVNDKYPIIQDNIKL 260
+G +L + F + P P P G F K P +
Sbjct: 221 WDNKGDTALFTHXXPFYSYDIPHTCGPDPKVCCQFDFKRXGSFGLSCPWKVP----PRTI 276
Query: 261 FDYNVQDRVNDFVAAAISQANITRTNHIMWTMGTDFKYQYARTWFRQ---LDKFIHYVNM 317
D NV R + V +A + RTN ++ +G DF+++ W Q ++ ++N
Sbjct: 277 SDQNVAARSDLLVDQWKKKAELYRTNVLLIPLGDDFRFKQNTEWDVQRVNYERLFEHINS 336
Query: 318 DGRVN--ALYSTPSIYTDAKY----ASNESWPLKTDDFFPYADRAHAYWTGYFSSRPALK 371
N A + T Y DA + A +P + DFF YADR+ YW+GY++SRP K
Sbjct: 337 QAHFNVQAQFGTLQEYFDAVHQAERAGQAEFPTLSGDFFTYADRSDNYWSGYYTSRPYHK 396
Query: 372 RYVKVMSGYYLAARQLEFYI---GRSETGHNTDSLADALAIAQHHDAVTGTEKQHVANDY 428
R +V+ Y AA L + G + + L++ QHHD +TGT K HV DY
Sbjct: 397 RXDRVLXHYVRAAEXLSAWHSWDGMARIEERLEQARRELSLFQHHDGITGTAKTHVVVDY 456
Query: 429 AKRLAIGYXXXXXXXXXXLACLVDSPSDNGCGRSTTRFQQCPLLNISYCPASEIDFSN-- 486
+R + L+ PS S + F L+ S P S ++ S
Sbjct: 457 EQRXQEALKACQXVXQQSVYRLLTKPSIYSPDFSFSYFT----LDDSRWPGSGVEDSRTT 512
Query: 487 ---GKNLV----IVIYNSLGWKREDIIRIPVANGDVTVFNSEGKIIESQLVPPADAFMDL 539
G++++ +V +N+L RE ++ V++ V+V + +E+Q+ P D
Sbjct: 513 IILGEDILPSKHVVXHNTLPHWREQLVDFYVSSPFVSVTDLANNPVEAQVSPVWSWHHDT 572
Query: 540 RDYYVRAYLGRNPMVPPKYWLAFPVSVPPLGFSTYTISSVKRGGGHSIRSSIQTFESSDK 599
+ KY + F VPP G +TY ++ H+ +S +
Sbjct: 573 LTKTIHPQGSTT-----KYRIIFKARVPPXGLATYVLTISDSKPEHTSYAS-NLLLRKNP 626
Query: 600 STVEVGQGNLKLIFSSDKSKPINYINNKS-------------LVEESVEQSYSFYPAYNG 646
+++ +GQ + F + + N + L ++S F G
Sbjct: 627 TSLPLGQYPEDVKFGDPREISLRVGNGPTLAFSEQGLLKSIQLTQDSPHVPVHFKFLKYG 686
Query: 647 TNDKAPQNAGAYIFRPNGTFFIKSEGQVPLTVMRGPILDEVHQKINEWIYQVTRLYKGKE 706
+GAY+F PNG GQ + V +G + V + ++Q + +G
Sbjct: 687 VRSHG-DRSGAYLFLPNGPASPVELGQPVVLVTKGKLESSVSVGLPSVVHQT--IXRGGA 743
Query: 707 HVEVEFIVGPIPVDDGLGKEVVTHITSTLETNKTFYTDSNGRDFIKRIRDYRTDWDLEVN 766
E+ +V +D+ E+V + + +++ FYTD NG FIKR R +
Sbjct: 744 -PEIRNLVDIGSLDN---TEIVXRLETHIDSGDIFYTDLNGLQFIKRRRLDKL------- 792
Query: 767 EPVAGNYYPINLGIYMQDVKKEFSLLVDRALGGSSIVDGEVELMLHRRLLLDDSRGVAEA 826
P+ NYYPI G +++D +LL + LGGSS+ GE+E+ RRL DD RG+ +
Sbjct: 793 -PLQANYYPIPSGXFIEDANTRLTLLTGQPLGGSSLASGELEIXQDRRLASDDERGLGQG 851
Query: 827 LNETDCVL 834
+ + VL
Sbjct: 852 VLDNKPVL 859
>pdb|1O7D|D Chain D, The Structure Of The Bovine Lysosomal A-Mannosidase
Suggests A Novel Mechanism For Low Ph Activation
Length = 282
Score = 202 bits (513), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 107/253 (42%), Positives = 150/253 (59%), Gaps = 11/253 (4%)
Query: 634 VEQSYSFYPAYNGTNDKAPQNAGAYIFRPNGT--FFIKSEGQVPLTVMRGPILDEVHQKI 691
V Q++ +Y A G N+ + Q +GAYIFRPN F+ Q L ++ ++ EVHQ
Sbjct: 35 VRQAFYWYNASTG-NNLSSQASGAYIFRPNQNKPLFVSHWAQTHL--VKASLVQEVHQNF 91
Query: 692 NEWIYQVTRLYKGKEHVEVEFIVGPIPVDDGLGKEVVTHITSTLETNKTFYTDSNGRDFI 751
+ W QV RLY + H+E+E+ VGPIPV DG GKEV++ + L T FYTDSNGR+ +
Sbjct: 92 SAWCSQVVRLYPRQRHLELEWTVGPIPVGDGWGKEVISRFDTALATRGLFYTDSNGREIL 151
Query: 752 KRIRDYRTDWDLEVNEPVAGNYYPINLGIYMQDVKKEFSLLVDRALGGSSIVDGEVELML 811
+R R+YR W L EPVAGNYYP+N IY+ D + ++L DR+ GGSS+ DG +ELM+
Sbjct: 152 ERRRNYRPTWKLNQTEPVAGNYYPVNSRIYITDGNMQLTVLTDRSQGGSSLRDGSLELMV 211
Query: 812 HRRLLLDDSRGVAEALNETDCVLDECKGLTIQGKYYFRIDTIGDGAKWRRTFGQEIYSPP 871
HRRLL DD+RGV E LN+ E GL ++G++ +D A R + P
Sbjct: 212 HRRLLKDDARGVGEPLNK------EGSGLWVRGRHLVLLDKKETAAARHRLQAEMEVLAP 265
Query: 872 LLAFTEEDGDSWR 884
+ + G +R
Sbjct: 266 QVVLAQGGGARYR 278
>pdb|1O7D|C Chain C, The Structure Of The Bovine Lysosomal A-Mannosidase
Suggests A Novel Mechanism For Low Ph Activation
Length = 159
Score = 84.3 bits (207), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 89/183 (48%), Gaps = 37/183 (20%)
Query: 399 NTDSLADALAIAQHHDAVTGTEKQHVANDYAKRLAIGYXXXXXXXXXXLACLVDSPSDNG 458
++ L +A+A+ QHHDAV+GT +QHVANDYA++L+ G+ LA L D
Sbjct: 2 DSAPLNEAMAVLQHHDAVSGTSRQHVANDYARQLSEGWRPCEVLMSNALAHLSGLKED-- 59
Query: 459 CGRSTTRFQQCPLLNISYCPASEIDFSNGKNLVIVIYNSLGWKREDIIRIPVANGDVTVF 518
F C LNIS CP ++ + +++YN LG K + ++R+PV+ V
Sbjct: 60 -------FAFCRKLNISICPLTQ----TAERFQVIVYNPLGRKVDWMVRLPVSKHVYLVK 108
Query: 519 NSEGKIIESQLV--PPADAFMDLRDYYVRAYLGRNPMVPPKYWLAFPVSVPPLGFSTYTI 576
+ GKI+ S +V P +D+ L F VP +GFS Y++
Sbjct: 109 DPGGKIVPSDVVTIPSSDS----------------------QELLFSALVPAVGFSIYSV 146
Query: 577 SSV 579
S +
Sbjct: 147 SQM 149
>pdb|1O7D|B Chain B, The Structure Of The Bovine Lysosomal A-Mannosidase
Suggests A Novel Mechanism For Low Ph Activation
Length = 84
Score = 82.8 bits (203), Expect = 7e-16, Method: Composition-based stats.
Identities = 39/73 (53%), Positives = 47/73 (64%)
Query: 320 RVNALYSTPSIYTDAKYASNESWPLKTDDFFPYADRAHAYWTGYFSSRPALKRYVKVMSG 379
RVN LYSTP+ Y +N SW +K DDFFPYAD + +WTGYFSSRPALKRY ++
Sbjct: 2 RVNVLYSTPACYLWELNKANLSWSVKKDDFFPYADGPYMFWTGYFSSRPALKRYERLSYN 61
Query: 380 YYLAARQLEFYIG 392
+ QLE G
Sbjct: 62 FLQVCNQLEALAG 74
>pdb|2WYH|A Chain A, Structure Of The Streptococcus Pyogenes Family Gh38 Alpha-
Mannosidase
pdb|2WYH|B Chain B, Structure Of The Streptococcus Pyogenes Family Gh38 Alpha-
Mannosidase
pdb|2WYI|A Chain A, Structure Of The Streptococcus Pyogenes Family Gh38 Alpha-
Mannosidase Complexed With Swainsonine
pdb|2WYI|B Chain B, Structure Of The Streptococcus Pyogenes Family Gh38 Alpha-
Mannosidase Complexed With Swainsonine
Length = 923
Score = 33.9 bits (76), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 45/218 (20%), Positives = 92/218 (42%), Gaps = 26/218 (11%)
Query: 33 QGIVPGKLNVHLVAHTHDDVGWLKTVDQYYVGSNNSIQGACVQNVLDSVIPELLADKNRK 92
QG VH+++H+H D W +Q+++ + N++D ++ D +
Sbjct: 19 QGPAMATKKVHIISHSHWDREWYMAYEQHHMR---------LINLIDDLLEVFQTDPDFH 69
Query: 93 FIYVE-QAFFQRWWDEQSEAMQHEVKQLVGSGQLEFINGGMCMHDEAVTHYIDMIDQTTL 151
+++ Q + + + E++Q + SG+L I + D+ +T + +
Sbjct: 70 SFHLDGQTIILDDYLKVRPEREPEIRQAIASGKLR-IGPFYILQDDFLTSSESNVRNMLI 128
Query: 152 GHRFIKNEFGVTPRIGWQIDPFGHSAVQAYLLGSEVGFDSFFYGR-------IDYQDRAK 204
G + +G + +G+ D FG+ Q L + G + +GR + D ++
Sbjct: 129 GKEDC-DRWGASVPLGYFPDTFGNMG-QTPQLMLKAGLQAAAFGRGIRPTGFNNQVDTSE 186
Query: 205 RKNEKSLEVVWQG---SRSLGSSAQIFAGAFPENYEPP 239
+ + + E+ WQG SR LG +FA + E P
Sbjct: 187 KYSSQFSEISWQGPDNSRILG---LLFANWYSNGNEIP 221
>pdb|1FMJ|A Chain A, Crystal Structure Of Mercury Derivative Of Retinol
Dehydratase In A Complex With Retinol And Pap
pdb|1FMJ|B Chain B, Crystal Structure Of Mercury Derivative Of Retinol
Dehydratase In A Complex With Retinol And Pap
pdb|1FML|A Chain A, Crystal Structure Of Retinol Dehydratase In A Complex With
Retinol And Pap
pdb|1FML|B Chain B, Crystal Structure Of Retinol Dehydratase In A Complex With
Retinol And Pap
Length = 351
Score = 33.1 bits (74), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 41/92 (44%), Gaps = 14/92 (15%)
Query: 230 GAFPENYEP--PPGGFYFEVNDKYPIIQDNIKLFDYNVQDRVNDFVAAAISQANITRTNH 287
GAFP Y P G + P ++D + YN+ R D A+ ++ T T
Sbjct: 29 GAFPTTYVKLGPKGYMVYR-----PYLKDAANI--YNMPLRPTDVFVASYQRSGTTMTQE 81
Query: 288 IMWTMGTDFKYQYARTWFRQLDKFIHYVNMDG 319
++W + D ++ A+T+ + Y+ +DG
Sbjct: 82 LVWLIENDLNFEAAKTYMS-----LRYIYLDG 108
>pdb|1X8J|A Chain A, Crystal Structure Of Retinol Dehydratase In Complex With
Androsterone And Inactive Cofactor Pap
pdb|1X8J|B Chain B, Crystal Structure Of Retinol Dehydratase In Complex With
Androsterone And Inactive Cofactor Pap
pdb|1X8K|A Chain A, Crystal Structure Of Retinol Dehydratase In Complex With
Anhydroretinol And Inactive Cofactor Pap
pdb|1X8K|B Chain B, Crystal Structure Of Retinol Dehydratase In Complex With
Anhydroretinol And Inactive Cofactor Pap
pdb|1X8L|A Chain A, Crystal Structure Of Retinol Dehydratase In Complex With
All-Trans-4-Oxoretinol And Inactive Cofactor Pap
pdb|1X8L|B Chain B, Crystal Structure Of Retinol Dehydratase In Complex With
All-Trans-4-Oxoretinol And Inactive Cofactor Pap
Length = 351
Score = 33.1 bits (74), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 41/92 (44%), Gaps = 14/92 (15%)
Query: 230 GAFPENYEP--PPGGFYFEVNDKYPIIQDNIKLFDYNVQDRVNDFVAAAISQANITRTNH 287
GAFP Y P G + P ++D + YN+ R D A+ ++ T T
Sbjct: 29 GAFPTTYVKLGPKGYMVYR-----PYLKDAANI--YNMPLRPTDVFVASYQRSGTTMTQE 81
Query: 288 IMWTMGTDFKYQYARTWFRQLDKFIHYVNMDG 319
++W + D ++ A+T+ + Y+ +DG
Sbjct: 82 LVWLIENDLNFEAAKTYMS-----LRYIYLDG 108
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,848,655
Number of Sequences: 62578
Number of extensions: 1288076
Number of successful extensions: 2794
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 2711
Number of HSP's gapped (non-prelim): 27
length of query: 910
length of database: 14,973,337
effective HSP length: 108
effective length of query: 802
effective length of database: 8,214,913
effective search space: 6588360226
effective search space used: 6588360226
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)