Query 002542
Match_columns 910
No_of_seqs 270 out of 1237
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 02:06:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002542.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002542hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1959 Glycosyl hydrolase, fa 100.0 1E-217 3E-222 1804.2 70.6 874 2-910 1-887 (996)
2 PLN02701 alpha-mannosidase 100.0 2E-175 4E-180 1593.9 86.7 834 23-910 24-945 (1050)
3 KOG1958 Glycosyl hydrolase, fa 100.0 4E-155 9E-160 1302.0 56.6 833 23-909 146-1045(1129)
4 PRK09819 alpha-mannosidase; Pr 100.0 4E-104 8E-109 975.8 76.1 725 39-875 3-771 (875)
5 KOG4342 Alpha-mannosidase [Car 100.0 3.1E-76 6.7E-81 639.5 42.7 621 37-821 278-934 (1078)
6 PF01074 Glyco_hydro_38: Glyco 100.0 5.9E-60 1.3E-64 512.7 24.7 270 41-353 1-275 (275)
7 COG0383 AMS1 Alpha-mannosidase 100.0 2.3E-48 4.9E-53 472.4 21.9 572 40-815 198-790 (943)
8 PF07748 Glyco_hydro_38C: Glyc 100.0 1.1E-38 2.5E-43 372.2 31.6 360 490-909 1-370 (457)
9 PF09261 Alpha-mann_mid: Alpha 99.8 1.4E-21 3.1E-26 169.5 3.3 75 358-432 1-80 (80)
10 smart00872 Alpha-mann_mid Alph 99.8 5E-20 1.1E-24 159.4 6.8 74 359-432 1-79 (79)
11 COG0383 AMS1 Alpha-mannosidase 99.8 9E-21 2E-25 231.8 -2.7 358 38-434 2-389 (943)
12 PF03065 Glyco_hydro_57: Glyco 98.5 4.2E-07 9E-12 102.7 10.6 121 74-196 28-195 (360)
13 COG1543 Uncharacterized conser 96.4 0.0071 1.5E-07 67.6 7.5 122 72-195 75-207 (504)
14 COG1449 Alpha-amylase/alpha-ma 95.6 0.65 1.4E-05 55.9 19.5 97 93-191 162-262 (615)
15 PF01522 Polysacc_deac_1: Poly 95.5 0.15 3.2E-06 47.7 11.1 104 75-191 17-122 (123)
16 TIGR03212 uraD_N-term-dom puta 93.9 6.6 0.00014 43.1 20.3 111 74-198 75-187 (297)
17 TIGR02764 spore_ybaN_pdaB poly 93.1 0.96 2.1E-05 46.1 11.5 101 79-192 22-124 (191)
18 TIGR02884 spore_pdaA delta-lac 92.9 0.82 1.8E-05 48.0 10.9 101 80-193 54-157 (224)
19 TIGR03006 pepcterm_polyde poly 91.0 2.3 4.9E-05 45.9 11.8 112 72-195 24-139 (265)
20 TIGR02873 spore_ylxY probable 89.9 3.2 7E-05 44.8 11.8 101 78-191 100-202 (268)
21 PRK14582 pgaB outer membrane N 85.6 22 0.00048 43.4 16.3 80 114-196 168-275 (671)
22 PRK14581 hmsF outer membrane N 82.6 5.7 0.00012 48.2 9.7 81 113-196 167-275 (672)
23 PRK15394 4-deoxy-4-formamido-L 71.9 1.6E+02 0.0035 32.3 16.9 80 114-197 92-175 (296)
24 PF07481 DUF1521: Domain of Un 71.4 47 0.001 32.4 10.3 96 599-711 7-103 (171)
25 PF08672 APC2: Anaphase promot 67.1 6.6 0.00014 31.9 3.2 23 110-132 36-58 (60)
26 TIGR03826 YvyF flagellar opero 37.6 25 0.00055 33.7 2.5 51 73-130 27-77 (137)
27 TIGR03593 yidC_nterm membrane 35.6 2.9E+02 0.0062 31.2 11.1 29 599-627 73-101 (366)
28 PF14849 YidC_periplas: YidC p 35.5 2.4E+02 0.0053 30.1 10.1 25 602-626 2-26 (270)
29 PF12395 DUF3658: Protein of u 33.8 72 0.0016 29.4 4.8 69 41-136 40-108 (111)
30 PHA03393 odv-e66 occlusion-der 33.7 61 0.0013 39.3 5.3 109 53-183 54-174 (682)
31 PRK10148 hypothetical protein; 30.6 19 0.00042 35.0 0.4 18 164-181 123-140 (147)
32 PF02929 Bgal_small_N: Beta ga 27.3 7.9E+02 0.017 26.5 12.3 40 604-645 2-42 (276)
33 PF13289 SIR2_2: SIR2-like dom 26.9 3.2E+02 0.007 25.6 8.4 83 93-190 59-141 (143)
34 PF06044 DRP: Dam-replacing fa 26.7 1.1E+02 0.0024 32.1 5.0 100 26-132 135-250 (254)
35 COG0726 CDA1 Predicted xylanas 26.6 5.5E+02 0.012 26.7 11.0 115 52-190 65-181 (267)
36 PF10074 DUF2285: Uncharacteri 25.1 13 0.00028 34.1 -1.7 27 103-132 75-101 (106)
37 PF00538 Linker_histone: linke 21.3 2.8E+02 0.006 23.5 5.8 31 99-129 25-65 (77)
38 PF03755 YicC_N: YicC-like fam 21.0 2.2E+02 0.0048 28.0 5.9 61 103-163 39-101 (159)
39 PF01479 S4: S4 domain; Inter 20.5 91 0.002 23.6 2.5 31 103-134 5-36 (48)
40 PF08220 HTH_DeoR: DeoR-like h 20.2 4.4E+02 0.0096 20.8 6.6 53 80-137 4-56 (57)
No 1
>KOG1959 consensus Glycosyl hydrolase, family 38 - alpha-mannosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.2e-217 Score=1804.24 Aligned_cols=874 Identities=52% Similarity=0.876 Sum_probs=794.8
Q ss_pred cchhhHHHHHHHHHHHHhccccceeeEecCCCCCCCCceEEEEEeccCCCCccchhhhheeecCCCcchhHHHHHHHHHH
Q 002542 2 MTLKGLLLYYVIAFIAITSCVQAKYRVYNTSQGIVPGKLNVHLVAHTHDDVGWLKTVDQYYVGSNNSIQGACVQNVLDSV 81 (910)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VhlVpHSH~D~gWl~t~~~y~~~~~~~~~~~~v~~il~~v 81 (910)
|.|..++|+.+++++++.. ...++.|++|+...+++++||||||||+|+|||||+||||+|++|.||+++|++|||+|
T Consensus 1 ~~l~~~~~~l~~l~lli~~--~~~~~~y~t~~~~~~~~invHlVPHSHDDVGWLKTVDQyy~G~~n~Iq~AgVqyIldSV 78 (996)
T KOG1959|consen 1 MALNKFLLFLCLLLLLISL--VESRAGYNTCHKVVPNMINVHLVPHSHDDVGWLKTVDQYYYGSKNKIQHAGVQYILDSV 78 (996)
T ss_pred CCcccchHHHHHHHHHHHH--HhHhhccCCCccccCceeEEEecCCccCccceeeeehhheecCCcccchhhHHHHHHHH
Confidence 5566666665544443322 22445599999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCeEEEechhHHHHHHHhcCHHHHHHHHHHHhCCcEEEEcceeeeecccCCChHHHHHHHHHHHHHHHHHhC
Q 002542 82 IPELLADKNRKFIYVEQAFFQRWWDEQSEAMQHEVKQLVGSGQLEFINGGMCMHDEAVTHYIDMIDQTTLGHRFIKNEFG 161 (910)
Q Consensus 82 i~~L~~~p~~kF~~~e~~~~~~w~~~~~p~~~~~vk~lV~~GrlE~vgGgwv~~Dea~~~~esiIrql~~G~~~l~~~fG 161 (910)
|++|.+||+|||+++|++||.+||.+|+++.|+.||+||++||||||||||||+|||++||.|+|+||++||+||.++||
T Consensus 79 V~eLl~dp~RRFI~VE~aFF~rWW~~qS~~~k~~Vk~LV~~GrLEFi~Ggw~MnDEA~~hY~dvIDQ~TlGlrfL~~tFG 158 (996)
T KOG1959|consen 79 VEELLKDPNRRFIYVETAFFARWWNEQSETQKEQVKKLVNEGRLEFIGGGWSMNDEATTHYQDVIDQFTLGLRFLKDTFG 158 (996)
T ss_pred HHHHhcCCccceehhhHHHHHHHHHhcCHHHHHHHHHHHhcCCEEEecCeeeecchhhhhHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred --CCCceeeecCCCCCChhhHHHHhhhcCCcEEEEeccchhhHhhhccCCceeEEEecCCCCCCCCeeEEeeCCCCCCCC
Q 002542 162 --VTPRIGWQIDPFGHSAVQAYLLGSEVGFDSFFYGRIDYQDRAKRKNEKSLEVVWQGSRSLGSSAQIFAGAFPENYEPP 239 (910)
Q Consensus 162 --~~p~~~w~~D~FGhs~~~p~ll~~~~G~~~~~~~Ri~~~~~~~~~~~~~~eF~W~g~d~~~~gs~i~t~~~~~~Y~~p 239 (910)
.+|++||||||||||+.+|+|| |+|||+++||+||||+||+.|..++.|||+|+|++++|+.++|||++|++||++|
T Consensus 159 ~cgrPrvgWqIDPFGHSreqAslf-AqmGfd~~fFaRiDy~dK~~R~~~~~lE~iW~~S~sL~~~~~iFTg~l~n~Y~~P 237 (996)
T KOG1959|consen 159 ECGRPRVGWQIDPFGHSREQASLF-AQMGFDGVFFARIDYQDKAKRMKEKTLEMIWRGSESLGSSSQIFTGALYNHYSPP 237 (996)
T ss_pred ccCCcceeeeeCCCCcchHHHHHH-HHhCccchheeecchhhHHHHHhhccceEEeecCccccchhhhhhhccccCCCCC
Confidence 8999999999999999999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccccCCCCCccccCcccccccHHHHHHHHHHHHHHhhcccCCCeEEEeecCCCcccchHHHHHHHHHHHHHHhcC-
Q 002542 240 PGGFYFEVNDKYPIIQDNIKLFDYNVQDRVNDFVAAAISQANITRTNHIMWTMGTDFKYQYARTWFRQLDKFIHYVNMD- 318 (910)
Q Consensus 240 ~~~f~f~~~~~~~~~~d~~~~~~~nv~~~~~~~~~~~~~~~~~~~t~~il~~~G~Df~~~~a~~~f~~~~~li~~~N~~- 318 (910)
+|||||.+|.+.|++|++.+.+|||++|++.|+++++.++.+|+|||||+|||+||+|.+|..||+||||||+|+|+.
T Consensus 238 -~gfc~dv~c~d~Pi~D~~~~~d~NVkerVd~Fv~~a~~~a~~~RtnHim~~MG~DFqY~~A~v~fknmDkLI~yVN~~q 316 (996)
T KOG1959|consen 238 -PGFCFDVLCGDDPIIDGPRSYDYNVKERVDDFVAYAKNQAAYYRTNHIMWPMGDDFQYENANVWFKNMDKLIKYVNERQ 316 (996)
T ss_pred -CCceeccccCCCCCCCCCCCCCccHHHHHHHHHHHHHHhHhheecceEEEeccCCceehhhhHHHhhHHHHHHHhhhhh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999953
Q ss_pred --C-CeEEEEcChhhHHHHHHhcCCCCCCcCCCCccccccCCCccceeeecchhHHHHHHHHHHHHHHHHHHHHhhccCC
Q 002542 319 --G-RVNALYSTPSIYTDAKYASNESWPLKTDDFFPYADRAHAYWTGYFSSRPALKRYVKVMSGYYLAARQLEFYIGRSE 395 (910)
Q Consensus 319 --~-~~~i~~sT~~~Yf~al~~~~~~~p~~~gDf~py~~~~~~yWtG~yTSR~~~K~~~R~~e~~L~~ae~l~~l~~~~~ 395 (910)
+ .+++.||||+||++++++.+..||+++.|||||++++|+||||||||||.+|++.|+++.+|++|+||++++++..
T Consensus 317 a~gs~vnv~YSTpscYl~alh~~~~Twp~Kt~DFFPYa~~~~syWTGyFTSRPa~Kr~~R~~s~~lq~akQL~~la~l~~ 396 (996)
T KOG1959|consen 317 ADGSKVNVFYSTPSCYLNALHAANQTWPVKTDDFFPYASEPHSYWTGYFTSRPALKRFERDGSHYLQVAKQLSVLAGLSS 396 (996)
T ss_pred cCCceEEEEEcChHHHHHHHHHhcCcccccccccCcCCCCCCcceeeeccccHHHHHHHhhhhHHHHHHHHHhhhcCCCc
Confidence 4 7999999999999999999999999999999999999999999999999999999999999999999999998654
Q ss_pred --CCCchHHHHHHHHHhcccccccCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCcccccccccc
Q 002542 396 --TGHNTDSLADALAIAQHHDAVTGTEKQHVANDYAKRLAIGYTEAEEVVATALACLVDSPSDNGCGRSTTRFQQCPLLN 473 (910)
Q Consensus 396 --~~~~~~~~w~~l~~~QhHDaItGTs~~~V~~dy~~rl~~a~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~ln 473 (910)
..+.++.|+++|+++|||||||||+|++|.+||.++|..|+..|+++++.+|+.|.... ...|++|.+||
T Consensus 397 ~~~~~dl~~Lream~i~QHHDAVTGTekq~Va~DY~r~La~g~~~~e~~~~~aL~~lt~~~--------~~~f~~C~~lN 468 (996)
T KOG1959|consen 397 TEQGPDLDYLREAMAIMQHHDAVTGTEKQHVADDYARRLADGILGAEKLARDALRKLTNLP--------NGEFQSCLLLN 468 (996)
T ss_pred cccCccHHHHHHHHHHHhhcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC--------Cccchhhhhhc
Confidence 56789999999999999999999999999999999999999999999999999998754 23689999999
Q ss_pred cccCCCcccccCCCceEEEEEEcCCCceEeEEEEEEEecCcEEEEccCCcEEeEEEeCCCccccchhhhhhhhccCCCCC
Q 002542 474 ISYCPASEIDFSNGKNLVIVIYNSLGWKREDIIRIPVANGDVTVFNSEGKIIESQLVPPADAFMDLRDYYVRAYLGRNPM 553 (910)
Q Consensus 474 ~s~c~~~~~~l~~~~~~~v~v~Npl~~~r~~~V~i~v~~~~~~v~d~~G~~v~~Qi~~~~~~~~~~~~~~~~~~~~~~~~ 553 (910)
+|+||.++. ..+.+.|++||||+|.++++|+|||..+++.|.|+.|++|++|++|.......+. .+.
T Consensus 469 iS~C~~t~~---~~~~~~v~~YNpLa~~~t~~VRiPV~~~~~~V~D~~G~~v~Sqivp~~~~~~al~----------~~~ 535 (996)
T KOG1959|consen 469 ISECAFTKD---GADNFIVTLYNPLAHTVTQYVRIPVKEENYRVTDEKGRTVPSQIVPVPWQVLALE----------SRN 535 (996)
T ss_pred cccCCCCcC---CcCcEEEEEEcCCcceeeeEEEEeccCCCeEEECCCCCCcccceeccchhhhhhh----------ccc
Confidence 999999973 3578999999999999999999999999999999999999999999976433221 122
Q ss_pred CCCcEEEEEEeecCCCceEEEEEEecCCCCCccccccceecccCCCCceEEecceEEEEEECCCCCcEEEEecCCcceEE
Q 002542 554 VPPKYWLAFPVSVPPLGFSTYTISSVKRGGGHSIRSSIQTFESSDKSTVEVGQGNLKLIFSSDKSKPINYINNKSLVEES 633 (910)
Q Consensus 554 ~~~~~~l~f~a~vPplG~~ty~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ieN~~~~v~~~~~~G~l~si~dk~~g~~~~ 633 (910)
....|+|+|.|.|||+|+++|.|+........+ .+..............|+|+++++.||.++|.++++..+.+|++..
T Consensus 536 ~~~~~eLvf~asvpplg~aty~i~k~~~~~~~~-~~~~~~i~~~~~n~~~V~n~~~kl~fd~~tG~l~~v~~n~t~~t~~ 614 (996)
T KOG1959|consen 536 NDTKHELVFKASVPPLGIATYFIKKVASTERGS-ASHVRNIKKRESNATEVGNSHLKLVFDNDTGLLKTVEMNQTGVTEN 614 (996)
T ss_pred cCCCceEEEEEEecCccceEEEEeecCcccccc-cccccccccccCcceEeccceEEEEEcCCCCceEEEEecccCccee
Confidence 345689999999999999999999655432210 0111111122334489999999999998889999999888999999
Q ss_pred eeeeEEEeecCCCCCCCCCCCCcceeEecCCCeeeecC-CcceEEEEEcccEEEEEEEEcceEEEEEEEecCCCeEEEEE
Q 002542 634 VEQSYSFYPAYNGTNDKAPQNAGAYIFRPNGTFFIKSE-GQVPLTVMRGPILDEVHQKINEWIYQVTRLYKGKEHVEVEF 712 (910)
Q Consensus 634 ~~~~f~~Y~~~~g~~~~~~~~sGAYiF~P~~~~~~~~~-~~~~i~v~~Gpl~~~v~~~~~~~~~~~vrLy~~~~~ie~e~ 712 (910)
+.|+|.+|.+..|++ +.+.||||+||| +..++++. ....++|+.|||+.||++.++.|++|++|||+|.+++||||
T Consensus 615 V~Q~f~~Y~~~~g~n--~~q~SgAYiFRp-~~~~~~~~~~~vel~vv~G~LV~EVhQ~f~~wiSQviRvy~g~~~~E~Ew 691 (996)
T KOG1959|consen 615 VDQEFGYYKGYRGDN--DKQASGAYIFRP-GQADIPIVSDQVELTVVDGPLVKEVHQQFNPWISQVIRVYEGKNHVEFEW 691 (996)
T ss_pred eeeeeEEEEeecCCc--CCccCcceEecC-CCCCccccccceEEEEecCchHHHHHHHHHHHHhheeEecCCCcceEEEE
Confidence 999999999988853 359999999999 54444443 35788899999999999999999999999999999999999
Q ss_pred EEcceeccCCCCcEEEEEEEecCCCCCeEEEccCCCceeecccccCCCccccCCCccccceEeeeeeEEEEeCCcceEEE
Q 002542 713 IVGPIPVDDGLGKEVVTHITSTLETNKTFYTDSNGRDFIKRIRDYRTDWDLEVNEPVAGNYYPINLGIYMQDVKKEFSLL 792 (910)
Q Consensus 713 ~v~~ip~~~~~~~ev~~~f~t~i~s~~~fyTDsnG~~~ikR~~~~r~~w~~~~~~pv~~nyYPv~s~i~i~D~~~~ltvl 792 (910)
.|+|||++++.|||+++||+|+|.+++.|||||||++|+||.+++|++|..+.++||+||||||++.|||+|++.+|+||
T Consensus 692 ~VGpIp~~d~~gkEvVtr~~t~i~S~g~fYTDSNGRe~~kR~~d~r~~~~~~~~epiAGNYYPvt~~i~lqD~~~rl~vL 771 (996)
T KOG1959|consen 692 LVGPIPIDDGIGKEVVTRFSTEISSNGVFYTDSNGREMIKRVRDKREDFVLDVNEPIAGNYYPVTSRIYLQDSKKRLSVL 771 (996)
T ss_pred EecceecCCCccceEEEEeccccccCceEEecCcHHHHHHHHhcccCCCccccCccccccccccceeeEEecCCceEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccccceeeccCCeEEEEEeccccCCCCcCcccccccccccccccCCeEEEeEEEEEeecCCCcc-hhcccchhhhcCCc
Q 002542 793 VDRALGGSSIVDGEVELMLHRRLLLDDSRGVAEALNETDCVLDECKGLTIQGKYYFRIDTIGDGA-KWRRTFGQEIYSPP 871 (910)
Q Consensus 793 ~dr~~G~ssl~~G~iElmL~Rr~~~dD~rGvge~l~e~~~~~~~~~g~~~~~~~~l~~~~~~~~~-~~~r~~~~~~~~p~ 871 (910)
|||+|||+|++||+||||||||++.||+|||||+|||+.++ ..||++||+|++.|+...+.+ ..+|..++++..|.
T Consensus 772 ~DRAqGgsSl~dG~lElMLHRRl~~DD~~Gv~EaLnEt~~~---~~gL~~rGk~~~~l~~~~d~a~~~~r~~~~ei~~P~ 848 (996)
T KOG1959|consen 772 NDRAQGGSSLKDGQLELMLHRRLLNDDGRGVGEALNETVYG---HAGLIARGKLYVLLDKAGDGATGWRRLAEQEIHLPL 848 (996)
T ss_pred eecccCCccccCCeEEEEeeehhhcccccccchhccccccc---ccceEEeeeEEEEEecccccchhhhhhhhhhcccHH
Confidence 99999999999999999999999999999999999999886 379999999999999888876 77888999999999
Q ss_pred eeeeeccCCCcccCCC-ccc--ccCCCCCCCCCccceeeccC
Q 002542 872 LLAFTEEDGDSWRNSH-VTT--FSGIDSSYSLPDNVAIITLQ 910 (910)
Q Consensus 872 ~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~lp~~vhlltl~ 910 (910)
+.+|++.....|.... ... |++ +.+||.||||||||
T Consensus 849 ~~~f~~~~~~~~~~~~s~~~~~f~~---~~~lP~~vhLlTLe 887 (996)
T KOG1959|consen 849 WKFFSKPEGGEALNSLSIPGSAFSG---SYDLPQSVHLLTLE 887 (996)
T ss_pred HHHhhcCCCccchhhcCCCcccccc---ccCCCcceeeeecc
Confidence 9999987765554332 222 444 35899999999997
No 2
>PLN02701 alpha-mannosidase
Probab=100.00 E-value=2.1e-175 Score=1593.87 Aligned_cols=834 Identities=28% Similarity=0.495 Sum_probs=710.1
Q ss_pred cceeeEecCCCCCCCCceEEEEEeccCCCCccchhhhheeecCCCcchhHHHHHHHHHHHHHHHhCCCCeEEEechhHHH
Q 002542 23 QAKYRVYNTSQGIVPGKLNVHLVAHTHDDVGWLKTVDQYYVGSNNSIQGACVQNVLDSVIPELLADKNRKFIYVEQAFFQ 102 (910)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~VhlVpHSH~D~gWl~t~~~y~~~~~~~~~~~~v~~il~~vi~~L~~~p~~kF~~~e~~~~~ 102 (910)
++=.+.|+...+ ++++++||||||||||+|||||++|||. +.+++||++||+.|++||+|||+|+|++||+
T Consensus 24 qg~~~~y~~~~~-~~~~l~VhlVpHSH~D~gWl~T~~eyy~--------~~~~~ild~vv~~L~~dp~rkFi~~E~~fl~ 94 (1050)
T PLN02701 24 QGWRVKYRGDEW-DREKLKVFVVPHSHNDPGWILTVEEYYQ--------EQSRHILDTIVESLSKDPRRKFIWEEMSYLE 94 (1050)
T ss_pred cccceeeccccc-CCcceEEEEeCCCCCCHHHcCcHHHHHH--------HHHHHHHHHHHHHHHhCcCcceeeccHHHHH
Confidence 444566886655 5788999999999999999999999997 8999999999999999999999999999999
Q ss_pred HHHHhcCHHHHHHHHHHHhCCcEEEEcceeeeecccCCChHHHHHHHHHHHHHHHHHhCCCCceeeecCCCCCChhhHHH
Q 002542 103 RWWDEQSEAMQHEVKQLVGSGQLEFINGGMCMHDEAVTHYIDMIDQTTLGHRFIKNEFGVTPRIGWQIDPFGHSAVQAYL 182 (910)
Q Consensus 103 ~w~~~~~p~~~~~vk~lV~~GrlE~vgGgwv~~Dea~~~~esiIrql~~G~~~l~~~fG~~p~~~w~~D~FGhs~~~p~l 182 (910)
+||++++|+++++||+||++||||||||||||+|||++|||+|||||++||+|++++||+.|++||+|||||||++||+|
T Consensus 95 ~Ww~~~~pe~~~~vk~LV~~GrLE~vgGgwvm~DEa~~~~esiI~Ql~~G~~~l~~~fG~~P~~~W~iDpFGhs~~~P~L 174 (1050)
T PLN02701 95 RWWRDASPSKKEAFTKLVKNGQLEIVGGGWVMNDEANSHYFAIIEQITEGNMWLNDTIGVAPKNSWAIDPFGYSSTMAYL 174 (1050)
T ss_pred HHHHhcCHHHHHHHHHHHHcCCEEEECCceecccccccCHHHHHHHHHhhhHHHHhhcCCCCCcCccCCCCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcCCcEEEEeccchhhHhhhccCCceeEEEecCCCCCCCCeeEEeeCCC-CCC-----CCCCCcc--cccCCC----
Q 002542 183 LGSEVGFDSFFYGRIDYQDRAKRKNEKSLEVVWQGSRSLGSSAQIFAGAFPE-NYE-----PPPGGFY--FEVNDK---- 250 (910)
Q Consensus 183 l~~~~G~~~~~~~Ri~~~~~~~~~~~~~~eF~W~g~d~~~~gs~i~t~~~~~-~Y~-----~p~~~f~--f~~~~~---- 250 (910)
| ++|||++++|+|++|++|..+..++.+||+|+++++.++|++||||+||+ +|+ .||++|| ||..+.
T Consensus 175 l-~~~G~~~~~~~R~~y~~k~~~~~~~~~eF~W~~s~~~~dgs~Ift~~lp~y~Y~~p~~~~p~p~~c~~Fd~~~~~~~~ 253 (1050)
T PLN02701 175 L-RRMGFENMLIQRTHYEVKKELAQNKNLEYIWRQSWDAEETTDIFVHMMPFYSYDIPHTCGPEPAICCQFDFARMRGFQ 253 (1050)
T ss_pred H-HhCCCceEEEeccchHHHHHHhhcCCceEEEeCCCCCCCCCEEEEEEccccccCcccccCCCcccccccccccccccc
Confidence 9 99999999999999999999999999999999877766799999999994 553 2336777 665421
Q ss_pred ---CCccccCcccccccHHHHHHHHHHHHHHhhcccCCCeEEEeecCCCcc---cchHHHHHHHHHHHHHHhcCC--CeE
Q 002542 251 ---YPIIQDNIKLFDYNVQDRVNDFVAAAISQANITRTNHIMWTMGTDFKY---QYARTWFRQLDKFIHYVNMDG--RVN 322 (910)
Q Consensus 251 ---~~~~~d~~~~~~~nv~~~~~~~~~~~~~~~~~~~t~~il~~~G~Df~~---~~a~~~f~~~~~li~~~N~~~--~~~ 322 (910)
|+|..+++.++++|+++|++.|++++++++..|++|++|+|+|+||+| .+|..||+||++||+++|+++ .++
T Consensus 254 ~~~cp~~~~p~~~~~~nv~~r~~~~~~~~~~~s~~~rtn~iL~p~GdDf~~~~~~~a~~~f~n~dkli~~iN~~~~~~~~ 333 (1050)
T PLN02701 254 YELCPWGKHPVETNDENVQERAMKLLDQYRKKSTLYRTNTLLVPLGDDFRYISIDEAEAQFRNYQKLFDYINSNPSLKAE 333 (1050)
T ss_pred cccCcccCCccccchhHHHHHHHHHHHHHHHhhccccCCeEEEecCCCCCCcchhHHHHHHHhHHHHHHHHhhCcccCce
Confidence 333333456788999999999999999999999999999999999999 578899999999999999874 589
Q ss_pred EEEcChhhHHHHHHhcC----------------CCCCCcCCCCccccccCCCccceeeecchhHHHHHHHHHHHHHHHHH
Q 002542 323 ALYSTPSIYTDAKYASN----------------ESWPLKTDDFFPYADRAHAYWTGYFSSRPALKRYVKVMSGYYLAARQ 386 (910)
Q Consensus 323 i~~sT~~~Yf~al~~~~----------------~~~p~~~gDf~py~~~~~~yWtG~yTSR~~~K~~~R~~e~~L~~ae~ 386 (910)
++||||++||+++++.. ..||+++||||||+++.++||||||||||.+|+++|.+|++|++||+
T Consensus 334 i~~ST~~~Yf~~l~~~~~~~~~~~~ge~~~~~~~~~p~~~gDff~Ya~~~~~yWTGyyTSRp~lK~~~R~~e~~L~~aE~ 413 (1050)
T PLN02701 334 VKFGTLEDYFSTLRDEADRINYSRPGEVGSGEVPGFPSLSGDFFTYADRQQDYWSGYYVSRPFFKAVDRVLEQTLRAAEI 413 (1050)
T ss_pred EEECCHHHHHHHHHhhhccccccccccccccccCCCceecccccccccccccccceeeecHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998753 57999999999999999999999999999999999999999999999
Q ss_pred HHHhhc--------cCCC---CCchHHHHHHHHHhcccccccCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 002542 387 LEFYIG--------RSET---GHNTDSLADALAIAQHHDAVTGTEKQHVANDYAKRLAIGYTEAEEVVATALACLVDSPS 455 (910)
Q Consensus 387 l~~l~~--------~~~~---~~~~~~~w~~l~~~QhHDaItGTs~~~V~~dy~~rl~~a~~~~~~~~~~~l~~L~~~~~ 455 (910)
|++++. ..++ .+.++.+|++|+++||||+||||++++|++||..||.+++..++.+++.+++.|+....
T Consensus 414 L~sla~~~~~~~~~~~~~~~~~~~L~~~wk~l~~~QhHDaItGTsk~~V~~Dy~~rl~~~~~~~~~~~~~al~~L~~~~~ 493 (1050)
T PLN02701 414 LFSFLLGYCRRFQCEKLPTSFSYKLTAARRNLALFQHHDGVTGTAKDHVVVDYGTRMHTSLQDLQIFMSAAVEVLLGIRH 493 (1050)
T ss_pred HHHHHhhhhhhccccCCChhhHHHHHHHHHHHHhhccCcCcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 999842 2233 24578999999999999999999999999999999999999999999999999987432
Q ss_pred CCCCCCCCccccccc-ccccccCCCccc-ccCCCceEEEEEEcCCCceEeEEEEEEEecCcEEEEccCCcEEeEEEeCCC
Q 002542 456 DNGCGRSTTRFQQCP-LLNISYCPASEI-DFSNGKNLVIVIYNSLGWKREDIIRIPVANGDVTVFNSEGKIIESQLVPPA 533 (910)
Q Consensus 456 ~~~~~~~~~~~~~~~-~ln~s~c~~~~~-~l~~~~~~~v~v~Npl~~~r~~~V~i~v~~~~~~v~d~~G~~v~~Qi~~~~ 533 (910)
. .+..+...|+.|. .+|++.||.+.. .+..++...|+|||||+|+|+++|+|+|+.+.+.|+|++|++|++|+++.+
T Consensus 494 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvvfNpL~~~r~~vV~v~V~~~~~~V~d~~g~~v~~Qi~~~~ 572 (1050)
T PLN02701 494 E-KSDQTPSWFEPEQSRSKYDMLPVHKVINLREGKAHRVVFFNPLEQTREEVVMVVVDRPAVCVFDSNWTCVPSQISPEW 572 (1050)
T ss_pred c-ccccccccccccccccccccccccccccccCCCceEEEEECCCCceeeEEEEEEecCCcEEEEcCCCCEEeEEEeccc
Confidence 1 1122234467774 458899987752 233456689999999999999999999999999999999999999999875
Q ss_pred ccccchhhhhhhhccCCCCCCCCcEEEEEEeecCCCceEEEEEEecCCCCCcccccc--------------ceecccCCC
Q 002542 534 DAFMDLRDYYVRAYLGRNPMVPPKYWLAFPVSVPPLGFSTYTISSVKRGGGHSIRSS--------------IQTFESSDK 599 (910)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~f~a~vPplG~~ty~i~~~~~~~~~~~~~~--------------~~~~~~~~~ 599 (910)
..... ......|+|+|.|+||||||++|+|............++ .........
T Consensus 573 ~~~~~-------------~~~~~~~~l~F~a~vPplG~~ty~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 639 (1050)
T PLN02701 573 QHDGE-------------KLFTGRHRLYWKASVPALGLETYFIANGNVSCEKAVPAKLKVFNSDDKFPCPEPYSCSKLEG 639 (1050)
T ss_pred ccccc-------------ccccceEEEEEEEecCCceeEEEEEEEcCCCcccccccccccccccccccccccccccccCC
Confidence 42100 012346899999999999999999987532211000000 000001123
Q ss_pred CceEEecceEEEEEECCCCCcEEEEecCCcceEEeeeeEEEeecCCCCCCCCCCCCcceeEecCCCeeeecCCcceEEEE
Q 002542 600 STVEVGQGNLKLIFSSDKSKPINYINNKSLVEESVEQSYSFYPAYNGTNDKAPQNAGAYIFRPNGTFFIKSEGQVPLTVM 679 (910)
Q Consensus 600 ~~~~ieN~~~~v~~~~~~G~l~si~dk~~g~~~~~~~~f~~Y~~~~g~~~~~~~~sGAYiF~P~~~~~~~~~~~~~i~v~ 679 (910)
+.++|||++++|+||+.+|.|++|++|++|++..+.++|.+|.+ +.||||+|+|++.+.-.......+.|+
T Consensus 640 ~~~~ieN~~lkl~Fd~~TG~L~si~~~~~g~~~~v~q~f~~Y~s---------~~SGAYiFrP~~~~~p~~~~~~~~~v~ 710 (1050)
T PLN02701 640 DTVEISNSHQTLGFDVKTGLLRKIKIHKNGSETVVGEEIGMYSS---------QGSGAYLFKPDGEAQPIVQAGGLVVVS 710 (1050)
T ss_pred CcEEEecCeEEEEEcCCCCceeEEEecccCceecceeeeeeecC---------CCCcceEEcCCCCCcccCCCCceEEEE
Confidence 45899999999999999999999999999999999999999963 357999999987642212222345678
Q ss_pred EcccEEEEEEEE-----cceEEEEEEEecC-----CCeEEEEEEEcceeccCCCCcEEEEEEEecCCCCCeEEEccCCCc
Q 002542 680 RGPILDEVHQKI-----NEWIYQVTRLYKG-----KEHVEVEFIVGPIPVDDGLGKEVVTHITSTLETNKTFYTDSNGRD 749 (910)
Q Consensus 680 ~Gpl~~~v~~~~-----~~~~~~~vrLy~~-----~~~ie~e~~v~~ip~~~~~~~ev~~~f~t~i~s~~~fyTDsnG~~ 749 (910)
+||++++|++.+ +++++|++|||++ ...+|+|++||+||. +..|||+++||.|+|+|+++|||||||||
T Consensus 711 ~Gplv~eV~~~~~~~~~~s~isQ~iRLY~~~~~~~~~~vE~e~~V~~ip~-d~~~kEii~R~~T~i~s~~~FYTDsNG~q 789 (1050)
T PLN02701 711 EGPLVQEVHSVPKTKWEKSPLSRSTRLYHGGKSVQDLSVEKEYHVELLGH-DFNDKELIVRFKTDIDNKRVFYSDLNGFQ 789 (1050)
T ss_pred eCCEEEEEEEEeecccCCcceEEEEEEecCCCccccceEEEEEEecCccc-CCCCcEEEEEEeecccCCCeEEEcCccce
Confidence 999999999976 4789999999998 678999999999997 67899999999999999999999999999
Q ss_pred eeecccccCCCccccCCCccccceEeeeeeEEEEe-CCcceEEEeccccceeeccCCeEEEEEeccccCCCCcCcccccc
Q 002542 750 FIKRIRDYRTDWDLEVNEPVAGNYYPINLGIYMQD-VKKEFSLLVDRALGGSSIVDGEVELMLHRRLLLDDSRGVAEALN 828 (910)
Q Consensus 750 ~ikR~~~~r~~w~~~~~~pv~~nyYPv~s~i~i~D-~~~~ltvl~dr~~G~ssl~~G~iElmL~Rr~~~dD~rGvge~l~ 828 (910)
|+||+ +|+ ++|++||||||+++|||+| ++.||||+|||++||+|+++|+||||||||+++||+||||||||
T Consensus 790 m~kR~-----~~~---~~Pv~gNYYPv~s~a~IqD~~~~rltvltdrs~G~sSl~~GqLEiMLhRRLl~DD~rGvge~l~ 861 (1050)
T PLN02701 790 MSRRE-----TYD---KIPLQGNYYPMPSLAFLQGSNGQRFSVHSRQSLGVASLKNGWLEIMLDRRLVQDDGRGLGQGVM 861 (1050)
T ss_pred eeeec-----ccc---cCccccccccccceEEEEcCCCCeEEEEeccCcccccCCCcEEEEEEEeecccccCcccccccc
Confidence 99996 444 5999999999999999999 66899999999999999999999999999999999999999999
Q ss_pred cccccccccCCeEEEeEEEEEeecCCCcch------------hcccchhhhcCCceeeeeccCCCcccCCC--cccccCC
Q 002542 829 ETDCVLDECKGLTIQGKYYFRIDTIGDGAK------------WRRTFGQEIYSPPLLAFTEEDGDSWRNSH--VTTFSGI 894 (910)
Q Consensus 829 e~~~~~~~~~g~~~~~~~~l~~~~~~~~~~------------~~r~~~~~~~~p~~~~~~~~~~~~~~~~~--~~~~~~~ 894 (910)
|+ .++..+|+|+||+...... .....+..|++|+++|++....+. .... ..+|++|
T Consensus 862 dn---------k~~~~~f~ll~e~~~~~~~~~~~~~~~~~Sl~sh~~~~~l~~p~~~~~~~~~~~~-~~~~~~~~~~~~l 931 (1050)
T PLN02701 862 DN---------RPMNVVFHLLLESNISSSPPASNPLPLQPSLLSHRVGAHLNYPMHAFLAKKPQAT-SVENPQDTSFAPL 931 (1050)
T ss_pred cc---------ccccceEEEEEecccccCCCCCCCCcCCccHHHHHHHHhhcCCchhhcccCcccc-ccccccccccccc
Confidence 97 5789999999997664211 123456789999999995432221 1122 3789998
Q ss_pred CCCCCCCccceeeccC
Q 002542 895 DSSYSLPDNVAIITLQ 910 (910)
Q Consensus 895 ~~~~~lp~~vhlltl~ 910 (910)
.+ +|||+||||||+
T Consensus 932 ~~--~lpcD~hlv~lr 945 (1050)
T PLN02701 932 AK--PLPCDLHIVNFK 945 (1050)
T ss_pred cC--CCCCcEEEEEee
Confidence 75 999999999985
No 3
>KOG1958 consensus Glycosyl hydrolase, family 38 - alpha-mannosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.4e-155 Score=1302.01 Aligned_cols=833 Identities=29% Similarity=0.492 Sum_probs=694.3
Q ss_pred cceeeEecCCCCCCCCceEEEEEeccCCCCccchhhhheeecCCCcchhHHHHHHHHHHHHHHHhCCCCeEEEechhHHH
Q 002542 23 QAKYRVYNTSQGIVPGKLNVHLVAHTHDDVGWLKTVDQYYVGSNNSIQGACVQNVLDSVIPELLADKNRKFIYVEQAFFQ 102 (910)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~VhlVpHSH~D~gWl~t~~~y~~~~~~~~~~~~v~~il~~vi~~L~~~p~~kF~~~e~~~~~ 102 (910)
++-.+.|+...+....+++|++|||||+|+||++||++||. ...++||++++..|.++|++||+|+|++||.
T Consensus 146 qG~~i~yd~~~~~~~~~LkvfVvPHSHnDPGW~~Tf~~Yy~--------~~tr~Il~~~v~~L~e~~~~~FIwaEiS~~~ 217 (1129)
T KOG1958|consen 146 QGFKITYDPKKWDKEPFLKVFVVPHSHNDPGWIKTFEEYYQ--------RQTRHILNNMVNKLSEDPRMKFIWAEISFLE 217 (1129)
T ss_pred cCceeecChhhcccccceEEEEeeccCCCcchhhhHHHHHH--------HHHHHHHHHHHHHhhhCcccchhhhhHHHHH
Confidence 44456688777766666999999999999999999999998 8999999999999999999999999999999
Q ss_pred HHHHhcCHHHHHHHHHHHhCCcEEEEcceeeeecccCCChHHHHHHHHHHHHHHHHHhCCCCceeeecCCCCCChhhHHH
Q 002542 103 RWWDEQSEAMQHEVKQLVGSGQLEFINGGMCMHDEAVTHYIDMIDQTTLGHRFIKNEFGVTPRIGWQIDPFGHSAVQAYL 182 (910)
Q Consensus 103 ~w~~~~~p~~~~~vk~lV~~GrlE~vgGgwv~~Dea~~~~esiIrql~~G~~~l~~~fG~~p~~~w~~D~FGhs~~~p~l 182 (910)
+||+.++|+.+++||.||++||||||+|||||||||.+||.++|+|+++||+||..++|++|+++|.|||||||++||+|
T Consensus 218 ~ww~~~~~~kk~a~k~lv~~GqlEIvtGGWVMpDEAn~Hy~~~i~qliEGh~Wl~~~igv~P~s~WaiDPFG~S~TmpYL 297 (1129)
T KOG1958|consen 218 RWWDDASPTKKNAVKRLVKNGQLEIVTGGWVMPDEANSHYFAMIDQLIEGHQWLKNNIGVTPQSGWAIDPFGYSSTMPYL 297 (1129)
T ss_pred HhhhhcChHHHHHHHHHHhcCcEEEEeCccccCcccchhHHHHHHHHhhhhhHHhccCCCCCCcccccCCCCCCcchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcCCcEEEEeccchhhHhhhccCCceeEEEecCCCCCCCCeeEEeeCCC-CCCCC------C---CCcccccC----
Q 002542 183 LGSEVGFDSFFYGRIDYQDRAKRKNEKSLEVVWQGSRSLGSSAQIFAGAFPE-NYEPP------P---GGFYFEVN---- 248 (910)
Q Consensus 183 l~~~~G~~~~~~~Ri~~~~~~~~~~~~~~eF~W~g~d~~~~gs~i~t~~~~~-~Y~~p------~---~~f~f~~~---- 248 (910)
| +++||++++++|+||..|..++.+|++||+||+.++..+.++||||+||+ +|+.| | |+|+|.+.
T Consensus 298 L-~~ag~~~mlIQRvHYavKk~lA~qk~leF~WRQ~wds~~~tDl~tHmMPFysYDIphTCGPdP~ICCqFDFkRmpg~~ 376 (1129)
T KOG1958|consen 298 L-RRAGFENMLIQRVHYAVKKELAQQKSLEFIWRQYWDSTGDTDLLTHMMPFYSYDIPHTCGPDPKICCQFDFKRMPGGG 376 (1129)
T ss_pred H-hhcCchhHHHHHHHHHHHHHHHHhcccceeehhhccCCCCcchheeecccccccCCCccCCCCceeeeeecccCCCCC
Confidence 9 89999999999999999999999999999999999888889999999998 89766 2 68999876
Q ss_pred CCCCccccCcccccccHHHHHHHHHHHHHHhhcccCCCeEEEeecCCCcccchHHH---HHHHHHHHHHHhcCC--CeEE
Q 002542 249 DKYPIIQDNIKLFDYNVQDRVNDFVAAAISQANITRTNHIMWTMGTDFKYQYARTW---FRQLDKFIHYVNMDG--RVNA 323 (910)
Q Consensus 249 ~~~~~~~d~~~~~~~nv~~~~~~~~~~~~~~~~~~~t~~il~~~G~Df~~~~a~~~---f~~~~~li~~~N~~~--~~~i 323 (910)
+.|||-+.+..|++.||++||+.+++++++.+..|++|.+|+|.|+||+|....+| |.|+.+|++++|+++ .+++
T Consensus 377 ~~Cpw~vpP~~It~~NVa~rA~~LldQyrKkS~Lfr~nVlLiPlGDDFRy~~~~Ewd~Q~~NY~~LFD~iNs~~~~nv~a 456 (1129)
T KOG1958|consen 377 CECPWGVPPEKITDANVAARAELLLDQYRKKSELFRTNVLLIPLGDDFRYDKITEWDQQFDNYQKLFDHINSRPLLNVQA 456 (1129)
T ss_pred cCCCCCCCCeeechhhHHHHHHHHHHHHHHHhhhcccceEEEecCCccccCccHHHHHHHHHHHHHHHHHhcccccceee
Confidence 35667677888999999999999999999999999999999999999999987776 999999999999864 7889
Q ss_pred EEcChhhHHHHHHhc-------CCCCCCcCCCCccccccCCCccceeeecchhHHHHHHHHHHHHHHHHHHHHhhc----
Q 002542 324 LYSTPSIYTDAKYAS-------NESWPLKTDDFFPYADRAHAYWTGYFSSRPALKRYVKVMSGYYLAARQLEFYIG---- 392 (910)
Q Consensus 324 ~~sT~~~Yf~al~~~-------~~~~p~~~gDf~py~~~~~~yWtG~yTSR~~~K~~~R~~e~~L~~ae~l~~l~~---- 392 (910)
+|+|++|||++|++. ...+|+++||||+|+|+.++||||||||||.+|++.|.+|++||+||++.+|+.
T Consensus 457 qFGTlsDYF~al~k~~~e~~kg~~~FPtlSGDFFtYaDr~d~YWSGYyTSRPFyK~ldRvLeh~lR~AEIl~s~a~~~~~ 536 (1129)
T KOG1958|consen 457 QFGTLSDYFDALDKAYSERGKGQEPFPTLSGDFFTYADRDDHYWSGYYTSRPFYKRLDRVLEHYLRSAEILFSLALAHAH 536 (1129)
T ss_pred ecCCHHHHHHHHHHhhccccCCCCCCcccccCceeeecccCccceeeeecchHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 999999999999875 134799999999999999999999999999999999999999999999998631
Q ss_pred ---c--CCCC---CchHHHHHHHHHhcccccccCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCc
Q 002542 393 ---R--SETG---HNTDSLADALAIAQHHDAVTGTEKQHVANDYAKRLAIGYTEAEEVVATALACLVDSPSDNGCGRSTT 464 (910)
Q Consensus 393 ---~--~~~~---~~~~~~w~~l~~~QhHDaItGTs~~~V~~dy~~rl~~a~~~~~~~~~~~l~~L~~~~~~~~~~~~~~ 464 (910)
. ..+. ..+.+|||+|+++|||||||||||++|+.||..||..++..++.++.+++..|+..........+..
T Consensus 537 r~~~~~r~~~~~~~~L~~ARRnL~LFQHHDaITGTaK~~Vv~DYg~rl~~Sl~~~~~v~~~~~~~Ll~~~~~~y~~~~~~ 616 (1129)
T KOG1958|consen 537 RVGLAQRIEESNYELLTAARRNLGLFQHHDAITGTAKDAVVVDYGQRLHESLVNLQIVLENALELLLGKDSETYNSDPSH 616 (1129)
T ss_pred HhhhhhhcchhHHHHHHHHHHhhhhhhcccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccCCCC
Confidence 1 1122 2467899999999999999999999999999999999999999999999999988653222222221
Q ss_pred cccccccc--ccccCCC-cccccCCCceEEEEEEcCCCceEeEEEEEEEecCcEEEEccCCcEEeEEEeCCCccccchhh
Q 002542 465 RFQQCPLL--NISYCPA-SEIDFSNGKNLVIVIYNSLGWKREDIIRIPVANGDVTVFNSEGKIIESQLVPPADAFMDLRD 541 (910)
Q Consensus 465 ~~~~~~~l--n~s~c~~-~~~~l~~~~~~~v~v~Npl~~~r~~~V~i~v~~~~~~v~d~~G~~v~~Qi~~~~~~~~~~~~ 541 (910)
.+-+-.-. ..+.-|. +-..+ ...+..|++||||.++|.++|+|.|+.+.|.|.+..|++|++||.|++..+...
T Consensus 617 ~~~emd~~r~~~~~~pek~~~~~-~~~~~~vvlfN~l~q~R~evv~i~V~sp~V~V~~d~g~pv~~Qispvw~~~~tk-- 693 (1129)
T KOG1958|consen 617 SFIEMDDIRDSEDSLPEKTVIGL-SSGPRSVVLFNPLEQEREEVVTIRVNSPEVSVLDDGGVPVEAQISPVWQDTKTK-- 693 (1129)
T ss_pred CceehhhcccCCCcCcccceeec-cCCCceEEEeccchhhhhccEEEEecCCeeEEEcCCCceeeEeeccceeccccc--
Confidence 11110000 0111111 00112 133468999999999999999999999999999999999999999999632110
Q ss_pred hhhhhccCCCCCCCCcEEEEEEeecCCCceEEEEEEecCCCCCccccc---c-----ceec--ccCCCCceEEecceEEE
Q 002542 542 YYVRAYLGRNPMVPPKYWLAFPVSVPPLGFSTYTISSVKRGGGHSIRS---S-----IQTF--ESSDKSTVEVGQGNLKL 611 (910)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~l~f~a~vPplG~~ty~i~~~~~~~~~~~~~---~-----~~~~--~~~~~~~~~ieN~~~~v 611 (910)
......|+|.|.+.|||||..+|++..+.........+ + +... -.......+++|++..|
T Consensus 694 ----------~~~~~~~~l~f~a~vpplgl~v~~~~~~~~~~~~~l~s~~~~~~~~~~~s~~~~~~~~~~s~~~~~~~~l 763 (1129)
T KOG1958|consen 694 ----------TIKPGSYRLSFKATVPPLGLMVLRIDSGGLTEHAKLPSKDTSFPAWDLGSSSTIGDSRELSTLRNEYFEL 763 (1129)
T ss_pred ----------eeecceeEEEEEEecccceeeEEEeeccCcccccccccCCCCcccCCCccceeecCccccceeeccceeE
Confidence 11223699999999999999999998763321111000 0 0000 01112245899999999
Q ss_pred EEECCCCCcEEEEecCCcceEEeeeeEEEeecCCCCCCCCCCCCcceeEecCCCe-eeecCCcceEEEEEcccEEEEEEE
Q 002542 612 IFSSDKSKPINYINNKSLVEESVEQSYSFYPAYNGTNDKAPQNAGAYIFRPNGTF-FIKSEGQVPLTVMRGPILDEVHQK 690 (910)
Q Consensus 612 ~~~~~~G~l~si~dk~~g~~~~~~~~f~~Y~~~~g~~~~~~~~sGAYiF~P~~~~-~~~~~~~~~i~v~~Gpl~~~v~~~ 690 (910)
.|++++|.|.++..+.+++...+...|..|.+..+ +..||||.|.|+|++ ++..-....|.+ +|||+++|.+.
T Consensus 764 ~fd~~~G~i~~~~~~~D~~~~~~q~~f~~y~~~~~-----~~~sgaylf~p~G~a~~~i~~~~p~v~v-~g~L~qev~~~ 837 (1129)
T KOG1958|consen 764 RFDPETGTIKSINSLSDNKHFESQVSFSNYGERIS-----GDESGAYLFLPDGNAKPIIELQWPHVRV-KGPLVQEVSQF 837 (1129)
T ss_pred EeccccchhhhhhhcccCCCcccceeecccccccc-----CCCCceEEEccCCCCCCceecCCCeEEe-ecceeeeeccc
Confidence 99999999999988888888888788888865433 567999999999975 533333345666 99999999987
Q ss_pred Ecc---eEEEEEEEecCCCeEEEEEEEcceeccCCCCcEEEEEEEecCCCCCeEEEccCCCceeecccccCCCccccCCC
Q 002542 691 INE---WIYQVTRLYKGKEHVEVEFIVGPIPVDDGLGKEVVTHITSTLETNKTFYTDSNGRDFIKRIRDYRTDWDLEVNE 767 (910)
Q Consensus 691 ~~~---~~~~~vrLy~~~~~ie~e~~v~~ip~~~~~~~ev~~~f~t~i~s~~~fyTDsnG~~~ikR~~~~r~~w~~~~~~ 767 (910)
..+ ...|.+|+|.|. .+|++..|+ +.+..+.|+++||.|++++...||||+||+||+||.+. .+.
T Consensus 838 ~~~v~~~~~~~~~~~~G~-~vei~~~vd---i~~~~n~Ela~R~st~vds~~~FyTDlnG~Q~~kR~~~--------~Kl 905 (1129)
T KOG1958|consen 838 LKNVLHRLSQNVRGYSGE-EVEISNSVD---IRKEDNTELAMRFSTDVDSGDLFYTDLNGMQMIKRRRL--------DKL 905 (1129)
T ss_pred cchHHHhchhheeccCCc-ceeeeceee---cccccchhhhhhhhhcccCCceeeeccchhhhhhhhhc--------ccC
Confidence 742 233789999987 677777664 44567999999999999999999999999999999764 468
Q ss_pred ccccceEeeeeeEEEEeCCcceEEEeccccceeeccCCeEEEEEeccccCCCCcCcccccccccccccccCCeEEEeEEE
Q 002542 768 PVAGNYYPINLGIYMQDVKKEFSLLVDRALGGSSIVDGEVELMLHRRLLLDDSRGVAEALNETDCVLDECKGLTIQGKYY 847 (910)
Q Consensus 768 pv~~nyYPv~s~i~i~D~~~~ltvl~dr~~G~ssl~~G~iElmL~Rr~~~dD~rGvge~l~e~~~~~~~~~g~~~~~~~~ 847 (910)
|+++|||||.++++|+|.+.+|++++.+++|++|+.+|+||||++||+.+||+||+|+++.|+ .++..+|+
T Consensus 906 PlQaNyYPmpt~a~Iq~~~~RlsihS~q~lGvssL~sG~iEIm~DRrL~~DD~rGLgqGv~DN---------k~t~~~fr 976 (1129)
T KOG1958|consen 906 PLQANYYPMPTAAFIQDAKQRLSIHSAQSLGVSSLESGQIEIMLDRRLNQDDGRGLGQGVIDN---------KPTDMKFR 976 (1129)
T ss_pred cccceeecccceeeeecCCceEEEEeecccCccccccceEEEEecccccCCCCcccccccccc---------chhhheee
Confidence 999999999999999999999999999999999999999999999999999999999999876 57888999
Q ss_pred EEeecCCCcchh------------cccchhhhcCCceeeeeccCCCcccCCCcccccCCCCCCCCCccceeecc
Q 002542 848 FRIDTIGDGAKW------------RRTFGQEIYSPPLLAFTEEDGDSWRNSHVTTFSGIDSSYSLPDNVAIITL 909 (910)
Q Consensus 848 l~~~~~~~~~~~------------~r~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~vhlltl 909 (910)
|++++.+..+.. .....+.+.+|++.|+...+ ++... .-.+.++.. +|||++||+||
T Consensus 977 lv~e~~~s~~~p~e~~~~~~ps~~ah~a~~~l~yP~~~f~~~~p--k~i~~-~g~~~~~~~--~lpcDl~lvt~ 1045 (1129)
T KOG1958|consen 977 LVLESLNSAQDPTENSRVSYPSLAAHLASQSLNYPLMKFIYAEP--KKIED-QGIFEPLNL--SLPCDLHLVTF 1045 (1129)
T ss_pred eeecccccccCchhcCCCCChhhhhhcccceecCCchhhcccCC--CChhh-ccccccccC--CCccceeEEEe
Confidence 999987753211 12355778999998884322 12211 233566664 89999999997
No 4
>PRK09819 alpha-mannosidase; Provisional
Probab=100.00 E-value=3.6e-104 Score=975.83 Aligned_cols=725 Identities=16% Similarity=0.186 Sum_probs=564.0
Q ss_pred ceEEEEEeccCCCCccchhhhheeecCCCcchhHHHHHHHHHHHHHHHhCCCCeEEE-echhHHHHHHHhcCHHHHHHHH
Q 002542 39 KLNVHLVAHTHDDVGWLKTVDQYYVGSNNSIQGACVQNVLDSVIPELLADKNRKFIY-VEQAFFQRWWDEQSEAMQHEVK 117 (910)
Q Consensus 39 ~~~VhlVpHSH~D~gWl~t~~~y~~~~~~~~~~~~v~~il~~vi~~L~~~p~~kF~~-~e~~~~~~w~~~~~p~~~~~vk 117 (910)
+++||+|||||||+|||||++++. .++.++|++|+++|+++|+++|.+ +++..+.+||.+.+|+++++||
T Consensus 3 ~~~v~~v~HtH~D~~Wl~~~~~~~---------~~~~~~~~~vl~lle~~p~~~f~~~d~q~~~l~~~~~~~Pe~~~~ik 73 (875)
T PRK09819 3 KSKVHIVPHMHWDREWYFTTERSR---------ILLVNNMEEILDRLEQDNDYKYYVLDGQTSLLEDYLAVKPEDKERVK 73 (875)
T ss_pred ceEEEEeCCCCCChhhcCChHHhH---------HHHHHHHHHHHHHHHhCCCcceEEEchhHHHHHHHHHhChHHHHHHH
Confidence 478999999999999999999987 488899999999999999999764 3444444555589999999999
Q ss_pred HHHhCCcEEEEcceeeeecccCCChHHHHHHHHHHHHHHHHHhCCCCceeeecCCCCCChhhHHHHhhhcCCcEEEEecc
Q 002542 118 QLVGSGQLEFINGGMCMHDEAVTHYIDMIDQTTLGHRFIKNEFGVTPRIGWQIDPFGHSAVQAYLLGSEVGFDSFFYGRI 197 (910)
Q Consensus 118 ~lV~~GrlE~vgGgwv~~Dea~~~~esiIrql~~G~~~l~~~fG~~p~~~w~~D~FGhs~~~p~ll~~~~G~~~~~~~Ri 197 (910)
+||++||| ++||||||+||+++|||||||||++|++|+ ++||..|++||+|||||||++||||| ++|||+++++||+
T Consensus 74 ~lV~~Grl-~~G~W~v~~D~~l~sgEsliRqll~G~~~~-~~fG~~~~vgwlpD~FG~s~~lPqIl-~~~Gi~~~~~wr~ 150 (875)
T PRK09819 74 KLVQAGKL-IIGPWYTQTDQLVVSGESIVRNLLYGIRDC-REFGEPMKIGYLPDSFGQSGQMPQIY-NGFGITRTLFWRG 150 (875)
T ss_pred HHHHcCCE-eECcEEeecccccCCHHHHHHHHHHHHHHH-HHcCCCCceeeecCCCCCcHHHHHHH-HhCCCCeEEEEec
Confidence 99999999 665555999999999999999999999998 79999999999999999999999999 9999999999997
Q ss_pred chhhHhhhccCCceeEEEecCCCCCCCCeeEEeeCCCCCCCCCCCcccccCCCCCccccCcccccccHHHHHHHHHHHHH
Q 002542 198 DYQDRAKRKNEKSLEVVWQGSRSLGSSAQIFAGAFPENYEPPPGGFYFEVNDKYPIIQDNIKLFDYNVQDRVNDFVAAAI 277 (910)
Q Consensus 198 ~~~~~~~~~~~~~~eF~W~g~d~~~~gs~i~t~~~~~~Y~~p~~~f~f~~~~~~~~~~d~~~~~~~nv~~~~~~~~~~~~ 277 (910)
..+. ...+..+|+|+|+| ||+||||++|.+|+.+ ..+. ....+++++++.+++.++
T Consensus 151 ~~~~----~~~~~~~F~W~g~D----Gs~V~t~~~~~~Y~~g-~~~~---------------~~~~~~~~~~~~~~~~~~ 206 (875)
T PRK09819 151 VSDR----HGTDKTEFLWQSDD----GSEVLAQQLPLGYAIG-KYLP---------------EDEEELKKRLDEYFGVLE 206 (875)
T ss_pred cccc----ccCCCceEEEECCC----CCeEEEEECccccccC-CCCC---------------cCHHHHHHHHHHHHHHHh
Confidence 5321 11346789999999 9999999999999875 2110 112467788888877766
Q ss_pred HhhcccCCCeEEEeecCCCcccchHHHHHHHHHHHHHHhcC-CCeEEEEcChhhHHHHHHhcCCCCCCcCCCCc-ccccc
Q 002542 278 SQANITRTNHIMWTMGTDFKYQYARTWFRQLDKFIHYVNMD-GRVNALYSTPSIYTDAKYASNESWPLKTDDFF-PYADR 355 (910)
Q Consensus 278 ~~~~~~~t~~il~~~G~Df~~~~a~~~f~~~~~li~~~N~~-~~~~i~~sT~~~Yf~al~~~~~~~p~~~gDf~-py~~~ 355 (910)
+.+ .++++|+|+|+|+.+.. ++|.++|+.+|+. +.+++++||+++||++++++...||+++|||+ ++..+
T Consensus 207 ~~~---~~~~~l~~~G~d~~p~~-----~~~~e~i~~~~~~~~~~~~~~st~~~yf~~l~~~~~~lp~~~GEl~~~~y~~ 278 (875)
T PRK09819 207 KKS---STKNILLPNGHDQMPLQ-----KNLFEVMDKLNEIYPEREFVISRFENVFEKLEKQRDNLPTLKGEFIDGKYMR 278 (875)
T ss_pred hcC---CCCcEEEecCCCCCccc-----ccHHHHHHHHHhhCCCCcEEECCHHHHHHHHHhhcCCCCeeeeecCCCcccc
Confidence 554 78999999999997765 5788888888875 46899999999999999988788999999998 33333
Q ss_pred CCCccceeeecchhHHHHHHHHHHHHHH-HHHHHHhh---ccCCCCCchHHHHHHHHHhcccccccCCcchhhHHHHHHH
Q 002542 356 AHAYWTGYFSSRPALKRYVKVMSGYYLA-ARQLEFYI---GRSETGHNTDSLADALAIAQHHDAVTGTEKQHVANDYAKR 431 (910)
Q Consensus 356 ~~~yWtG~yTSR~~~K~~~R~~e~~L~~-ae~l~~l~---~~~~~~~~~~~~w~~l~~~QhHDaItGTs~~~V~~dy~~r 431 (910)
.| +|+||||+.+|++||++|++|+. +|.|.+++ |..|+...++++|+.|+++||||+||||++++|++|+..|
T Consensus 279 ~H---rG~~TSr~~iK~~nr~~E~~L~~~~E~l~~la~~~g~~yp~~~l~~~Wk~ll~nq~HD~i~G~sid~V~~d~~~r 355 (875)
T PRK09819 279 VH---RSIFSTRMDIKIANARIENKIVNVLEPLASIAYSLGFEYPHGLLEKIWKEMFKNHAHDSIGCCCSDTVHRDIVAR 355 (875)
T ss_pred cc---CCccccHHHHHHHHHHHHHHHHHHhchHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCcccccCChHHHHHHHHH
Confidence 33 59999999999999999999985 89888875 4567788899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCcccccccccccccCCCcccccCCCceEEEEEEcCCCceEeEEEEEEEe
Q 002542 432 LAIGYTEAEEVVATALACLVDSPSDNGCGRSTTRFQQCPLLNISYCPASEIDFSNGKNLVIVIYNSLGWKREDIIRIPVA 511 (910)
Q Consensus 432 l~~a~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~ln~s~c~~~~~~l~~~~~~~v~v~Npl~~~r~~~V~i~v~ 511 (910)
|.++.+.++.+++.+++.|+.+.. .++...++||||++|+|+++|++++.
T Consensus 356 ~~~~~~~~~~l~~~~l~~l~~~i~------------------------------~~~~~~~~vfN~l~~~r~~~v~i~~~ 405 (875)
T PRK09819 356 YKLAEDLADNLLDFYMRKIADNMP------------------------------QSDADKLTVFNLLPYEREEVINTTVY 405 (875)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC------------------------------cCCCCEEEEEcCCCccceeEEEEEEE
Confidence 999999999999999999986431 12345789999999999999998774
Q ss_pred --cCcEEEEccCCcEEeEEEeCCCccccchhhhhhhhccCCCCCCCCcEEEEEEe-ecCCCceEEEEEEecCCCCCcccc
Q 002542 512 --NGDVTVFNSEGKIIESQLVPPADAFMDLRDYYVRAYLGRNPMVPPKYWLAFPV-SVPPLGFSTYTISSVKRGGGHSIR 588 (910)
Q Consensus 512 --~~~~~v~d~~G~~v~~Qi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~f~a-~vPplG~~ty~i~~~~~~~~~~~~ 588 (910)
...+.+.|.+|+++++|+...................+.. ....+.|.|.+ +||||||++|.+...+......
T Consensus 406 ~~~~~~~~~d~~g~~v~~~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~f~~~~vP~lG~~~~~i~~~~~~~~~~-- 481 (875)
T PRK09819 406 LPASQFTLRDDRGNPLPYTIREKRDIDPGLLDRQIVHYGNYD--PFMEFDIQINVQILPAMGYRTLYIELNEEGNVIE-- 481 (875)
T ss_pred eccCCEEEECCCCCEeeEEEeeccccccchhhcceeccCCCC--ceEEEEEEEEECCCCCcccEEEEEEeCCcccccc--
Confidence 5778999999999999998654322111110000000000 00145788874 8999999999997643311100
Q ss_pred ccceecccCCCCceEEecceEEEEEECCCCCcEEEEecCCcceEEeeeeEEEeecCCCCCCCCCCCCcceeEecCCC-ee
Q 002542 589 SSIQTFESSDKSTVEVGQGNLKLIFSSDKSKPINYINNKSLVEESVEQSYSFYPAYNGTNDKAPQNAGAYIFRPNGT-FF 667 (910)
Q Consensus 589 ~~~~~~~~~~~~~~~ieN~~~~v~~~~~~G~l~si~dk~~g~~~~~~~~f~~Y~~~~g~~~~~~~~sGAYiF~P~~~-~~ 667 (910)
........|||++|+|+|+ .+|.| +|+||.+|+++. .+..|. +. +..++||+|.|... ..
T Consensus 482 -------~~~~~~~~ieN~~~~v~i~-~~G~l-~l~dk~~gr~~~---~~~~~~-d~------~d~gD~yd~~p~~~d~~ 542 (875)
T PRK09819 482 -------PKSSAEGIIENEFYQITLN-ENGTL-TIVDKKSGKTYD---RQLIIE-EN------GDDGDEYDYSPPREDWV 542 (875)
T ss_pred -------ccccccceEecCcEEEEEe-cCCcE-EEEECCCCcEEe---ceEEEE-ec------CcCCCCcccCCCCCCCE
Confidence 1223467899999999999 78999 599999999874 333443 22 33567999998653 23
Q ss_pred eecCC-cceEEEEEcccEEEEEEEEc------------------ceEEEEEEEecCCCeEEEEEEEcceeccCCCCcEEE
Q 002542 668 IKSEG-QVPLTVMRGPILDEVHQKIN------------------EWIYQVTRLYKGKEHVEVEFIVGPIPVDDGLGKEVV 728 (910)
Q Consensus 668 ~~~~~-~~~i~v~~Gpl~~~v~~~~~------------------~~~~~~vrLy~~~~~ie~e~~v~~ip~~~~~~~ev~ 728 (910)
+.... ...+.++.||+.+++++.+. +.++|+++|++++++|||+++|++. ..+|.++
T Consensus 543 ~~~~~~~~~~~v~~~~~~~~~~i~~~~~~p~~~~~r~~~~~~~~~~i~~~i~L~~~s~~i~~~~~vdw~----~~~~~Lr 618 (875)
T PRK09819 543 ITSAEAVPSVEISHSAWQSRAVIRYRLAVPKNLEERAAGQKTGRMPVKLVVTLSKNSRRIDFDVNLDNQ----ADDHRLR 618 (875)
T ss_pred EeccCCcceEEEEEcCCeEEEEEEEEEeCCcChhhHhhccccceEEEEEEEEEecCCCEEEEEEEEecc----ccceEEE
Confidence 33222 34677888999888776642 4788999999999999999999865 6799999
Q ss_pred EEEEecCCCCCeEEEccCCCceeeccccc--CCCccccCC--CccccceEeeeeeEEEEeCCcceEEEeccccceeeccC
Q 002542 729 THITSTLETNKTFYTDSNGRDFIKRIRDY--RTDWDLEVN--EPVAGNYYPINLGIYMQDVKKEFSLLVDRALGGSSIVD 804 (910)
Q Consensus 729 ~~f~t~i~s~~~fyTDsnG~~~ikR~~~~--r~~w~~~~~--~pv~~nyYPv~s~i~i~D~~~~ltvl~dr~~G~ssl~~ 804 (910)
+.|+++|.+...+| | .+||+++|+++. .++|+.... .|++ .||+++|++|.|++.+++|+||+++|++...+
T Consensus 619 v~fp~~i~~~~~~~-d-~~fG~i~Rp~~~~~~~~W~~~~~~e~p~~--~~~~~~~v~ls~~~~Gvall~dg~~ey~v~g~ 694 (875)
T PRK09819 619 VLFPTEIASKFSLA-D-QQFGSITRPVNDPAMDVWEQEGWQEAPIS--IEPMQSFVALHDERHGVAVFTEGVREYEIIGE 694 (875)
T ss_pred EEccCCCCCCceEc-C-CCceEEECCCcCccccccccccceeCCCC--ChhhhceEEEecCCceEEEECCCcceEEEecC
Confidence 99999999866544 5 999999999764 468886533 3444 78999999999999999999999999975543
Q ss_pred --CeEEEEEeccc--------cCCCCcCcccccccccccccccCCeEEEeEEEEEeecCCCcchhcccchhhhcCCceee
Q 002542 805 --GEVELMLHRRL--------LLDDSRGVAEALNETDCVLDECKGLTIQGKYYFRIDTIGDGAKWRRTFGQEIYSPPLLA 874 (910)
Q Consensus 805 --G~iElmL~Rr~--------~~dD~rGvge~l~e~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~p~~~~ 874 (910)
++|.|+|.|+. +.-.+|..|..+-..+. +|.|. -+-+|.|....-.-....-.+.+..++.|+..+
T Consensus 695 ~~~~i~LTLlRs~g~lgk~~l~~rpgr~sG~~~ptP~a---q~~G~-h~f~y~l~ph~g~~~~~~~~~~a~~~n~p~~~~ 770 (875)
T PRK09819 695 NYDTIALTLFRGVGLLGKEDLLYRPGRPSGIKIPTPDS---QLLGE-LSFRFSLTSYEGTFDEAGVAQQAKEYLTPVQCY 770 (875)
T ss_pred CCCeEEEEeecccCccCCCccccCCCcccCCccCCChH---HhcCc-eEEEEEEEEccCCcchHHHHHHHHHhccCccee
Confidence 38999999996 33455666643322211 12343 244556654322211111233567888888765
Q ss_pred e
Q 002542 875 F 875 (910)
Q Consensus 875 ~ 875 (910)
-
T Consensus 771 ~ 771 (875)
T PRK09819 771 N 771 (875)
T ss_pred e
Confidence 3
No 5
>KOG4342 consensus Alpha-mannosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.1e-76 Score=639.49 Aligned_cols=621 Identities=18% Similarity=0.224 Sum_probs=498.9
Q ss_pred CCceEEEEEeccCCCCccchhhhheeecCCCcchhHHHHHHHHHHHHHHHhCCCCeEEEechhHHHHHHHhcCHHHHHHH
Q 002542 37 PGKLNVHLVAHTHDDVGWLKTVDQYYVGSNNSIQGACVQNVLDSVIPELLADKNRKFIYVEQAFFQRWWDEQSEAMQHEV 116 (910)
Q Consensus 37 ~~~~~VhlVpHSH~D~gWl~t~~~y~~~~~~~~~~~~v~~il~~vi~~L~~~p~~kF~~~e~~~~~~w~~~~~p~~~~~v 116 (910)
...-+||.|+|.|+|.+|||+|.|..+ +..+...+.+..|+++|+++|+.++... .+|.++.+|+.++++
T Consensus 278 es~~nv~aiGhCHIDTAWLWPFaETrR---------KivRSW~tq~~lMdR~PEy~FvcSQAqQ-~~WlkedhP~~f~kl 347 (1078)
T KOG4342|consen 278 ESQHNVHAIGHCHIDTAWLWPFAETRR---------KIVRSWVTQLQLMDRNPEYIFVCSQAQQ-LEWLKEDHPGLFSKL 347 (1078)
T ss_pred ccccceeeeccccccchhhcChHHHHH---------HHHHHHHHHHhHHhhCcceeEehhhHHH-HHHHhhhChhHHHHH
Confidence 446899999999999999999999984 8888899999999999999999876444 589999999999999
Q ss_pred HHHHhCCcEEEEcceeeeecccCCChHHHHHHHHHHHHHHHHHhCCCCceeeecCCCCCChhhHHHHhhhcCCcEEEEec
Q 002542 117 KQLVGSGQLEFINGGMCMHDEAVTHYIDMIDQTTLGHRFIKNEFGVTPRIGWQIDPFGHSAVQAYLLGSEVGFDSFFYGR 196 (910)
Q Consensus 117 k~lV~~GrlE~vgGgwv~~Dea~~~~esiIrql~~G~~~l~~~fG~~p~~~w~~D~FGhs~~~p~ll~~~~G~~~~~~~R 196 (910)
++.+..||+-.|||.||++|.++|+||+||||++.|++|+.++||...+.-|+||+||+|+|+|||. +.+||+.|++++
T Consensus 348 ~e~~~q~qF~pvGGtWVE~DtNiPsGEslvRQFl~GQ~FFlkeFG~~c~~FWLPDTFGYSsQ~PQic-rlcGidrFLTQK 426 (1078)
T KOG4342|consen 348 QEFACQGQFVPVGGTWVEMDTNIPSGESLVRQFLQGQNFFLKEFGKMCSEFWLPDTFGYSSQLPQIC-RLCGIDRFLTQK 426 (1078)
T ss_pred HHHHhcCceeeccceEEecCCCCCChHHHHHHHHhhhhHHHHHhhhhhcceeccccccccchhhHHH-HhhcHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred cchhhHhhhccCCceeEEEecCCCCCCCCeeEEeeCCC-CCCCCCCCcccccCCCCCccccCcccccccHHHHHHHHHHH
Q 002542 197 IDYQDRAKRKNEKSLEVVWQGSRSLGSSAQIFAGAFPE-NYEPPPGGFYFEVNDKYPIIQDNIKLFDYNVQDRVNDFVAA 275 (910)
Q Consensus 197 i~~~~~~~~~~~~~~eF~W~g~d~~~~gs~i~t~~~~~-~Y~~p~~~f~f~~~~~~~~~~d~~~~~~~nv~~~~~~~~~~ 275 (910)
+.|+.-+.+++.. |.|.|.| ||+|++|+.|. .|... -++ ++.+..
T Consensus 427 LSWNniNSFPhsT---FnW~glD----GSqvl~HmPPgntYtad-----------------------~~v----~dVL~t 472 (1078)
T KOG4342|consen 427 LSWNNINSFPHST---FNWEGLD----GSQVLVHMPPGNTYTAD-----------------------GSV----EDVLKT 472 (1078)
T ss_pred ccccccCcCCccc---eeeeecc----CceEEEecCCCCccccc-----------------------CcH----HHHHHH
Confidence 9999999998876 9999999 99999998664 45443 122 334444
Q ss_pred HHHhhcccCCCeEEEeecCCCcccchHHHHHHHHHHHH---HHhcCC-CeEEEEc-ChhhHHHHHHhc---CCCCCCcCC
Q 002542 276 AISQANITRTNHIMWTMGTDFKYQYARTWFRQLDKFIH---YVNMDG-RVNALYS-TPSIYTDAKYAS---NESWPLKTD 347 (910)
Q Consensus 276 ~~~~~~~~~t~~il~~~G~Df~~~~a~~~f~~~~~li~---~~N~~~-~~~i~~s-T~~~Yf~al~~~---~~~~p~~~g 347 (910)
+.+....-+.++=|+.+|-....+.+.. +.++||.+ .-|..+ -++++.+ |+++||+++.+. +..+|+|.|
T Consensus 473 v~qnk~~~~~~~gl~lfG~GDGGGGPT~--eML~klrR~r~~~Nt~G~lP~vqlg~tvdeffd~ilkrtnqg~~LptW~G 550 (1078)
T KOG4342|consen 473 VAQNKDKGRANHGLFLFGFGDGGGGPTQ--EMLDKLRRIRSLSNTDGVLPRVQLGITVDEFFDAILKRTNQGHDLPTWVG 550 (1078)
T ss_pred HHhcCCccccCcceEEEEecCCCCCCcH--HHHHHHHHhhcccccCCcccceeecCCHHHHHHHHHhhhccCCcccccch
Confidence 4444444566666777775444444322 34454443 445555 6899999 999999999775 467999999
Q ss_pred CC-ccccccCCCccceeeecchhHHHHHHHHHHHHHHHHHHHHhhcc-----CCCCCchHHHHHHHHHhcccccccCCcc
Q 002542 348 DF-FPYADRAHAYWTGYFSSRPALKRYVKVMSGYYLAARQLEFYIGR-----SETGHNTDSLADALAIAQHHDAVTGTEK 421 (910)
Q Consensus 348 Df-~py~~~~~~yWtG~yTSR~~~K~~~R~~e~~L~~ae~l~~l~~~-----~~~~~~~~~~w~~l~~~QhHDaItGTs~ 421 (910)
|+ |++|+ |+|||++.+|+.+|.+|..|+.+|.+.+++.. .||...++.+|+.++++|+||.+||+++
T Consensus 551 ELyfEfHr-------GTYTtqAq~KKlmR~~Ei~LHD~E~~sslas~~s~dy~YP~~qlq~LWr~~LLcQFHDVlpGSCI 623 (1078)
T KOG4342|consen 551 ELYFEFHR-------GTYTTQAQIKKLMRECEIILHDVELLSSLASARSADYLYPAAQLQHLWRLLLLCQFHDVLPGSCI 623 (1078)
T ss_pred heEEEEec-------CceeeHHHHHHHHHHHHHHhhhHHHHHHHHHhhcccccCcHHHHHHHHHHHHHHHhcccCCcHHH
Confidence 95 59988 99999999999999999999999999998642 3567789999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCcccccccccccccCCCcccccCCCceEEEEEEcCCCce
Q 002542 422 QHVANDYAKRLAIGYTEAEEVVATALACLVDSPSDNGCGRSTTRFQQCPLLNISYCPASEIDFSNGKNLVIVIYNSLGWK 501 (910)
Q Consensus 422 ~~V~~dy~~rl~~a~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~ln~s~c~~~~~~l~~~~~~~v~v~Npl~~~ 501 (910)
+.|+++.+-.+.+....++.++..+++.|.... .+...+++.|+|+|.
T Consensus 624 eMVykeA~p~~~~v~k~~~tLl~~a~~~L~as~--------------------------------s~ke~L~~~nTLpW~ 671 (1078)
T KOG4342|consen 624 EMVYKEAMPHYEDVRKHGNTLLSAAAAALCASE--------------------------------SGKEGLLIVNTLPWK 671 (1078)
T ss_pred HHHHHhhhhHHHHHHHhhHHHHHHHHHHHhcCC--------------------------------CCccceEEEeccccc
Confidence 999999999999999999999999999885432 112357899999999
Q ss_pred EeEEEEEEEecCcEEEEccCCcEEeEEEeCCCccccchhhhhhhhccCCCCCCCCcEEEEE-EeecCCCceEEEEEEecC
Q 002542 502 REDIIRIPVANGDVTVFNSEGKIIESQLVPPADAFMDLRDYYVRAYLGRNPMVPPKYWLAF-PVSVPPLGFSTYTISSVK 580 (910)
Q Consensus 502 r~~~V~i~v~~~~~~v~d~~G~~v~~Qi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~f-~a~vPplG~~ty~i~~~~ 580 (910)
|.+++.++-+.... ++ ..++|.+|++...-
T Consensus 672 ~~~v~~~~kp~k~~---------------------------------------------~~e~c~~~g~~ta~vt~---- 702 (1078)
T KOG4342|consen 672 RIEVMALPKPGKAH---------------------------------------------SLELCTVPGMGTAPVTP---- 702 (1078)
T ss_pred eeeeecccCCCCce---------------------------------------------eEEEeccCCccccCCCC----
Confidence 99987766432111 11 13556665443210
Q ss_pred CCCCccccccceecccCCCCceEEecceEEEEEECCCCCcEEEEecCCcceEEe---------eeeEEEeecCCCCCCCC
Q 002542 581 RGGGHSIRSSIQTFESSDKSTVEVGQGNLKLIFSSDKSKPINYINNKSLVEESV---------EQSYSFYPAYNGTNDKA 651 (910)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~ieN~~~~v~~~~~~G~l~si~dk~~g~~~~~---------~~~f~~Y~~~~g~~~~~ 651 (910)
. .+++.. -...+.++|.|+.+||.++ .+|.|+||+|...|++... .++|..|. +.
T Consensus 703 ---~---~~p~~~--yq~Dd~~~L~Ng~lrV~i~-p~G~itSl~d~~~grE~ld~~~Grn~~GaNQfVlfd-------D~ 766 (1078)
T KOG4342|consen 703 ---P---TSPVFV--YQTDDSVTLDNGILRVKID-PTGRITSLVDVASGREALDTAEGRNAVGANQFVLFD-------DV 766 (1078)
T ss_pred ---C---CCceeE--EecCCeEEEECCEEEEEEC-CCCceeeeeehhcccchhcccccccccCcccEEEec-------CC
Confidence 0 011111 1245678999999999999 5799999999988888761 24666664 23
Q ss_pred CCCCcceeEecCCCeeeec-CCcceEEE-EEcccEEEEEEEE----cceEEEEEEEecCC-----CeEEEEEEEcceecc
Q 002542 652 PQNAGAYIFRPNGTFFIKS-EGQVPLTV-MRGPILDEVHQKI----NEWIYQVTRLYKGK-----EHVEVEFIVGPIPVD 720 (910)
Q Consensus 652 ~~~sGAYiF~P~~~~~~~~-~~~~~i~v-~~Gpl~~~v~~~~----~~~~~~~vrLy~~~-----~~ie~e~~v~~ip~~ 720 (910)
+-.|.||+-.--.-..+++ .....+.| .+|+++..+.+.+ ++.++++|.|-.+. +.|+|.++|+ |
T Consensus 767 PL~WqAWDte~ysle~y~vl~k~k~v~v~~~g~lr~sv~v~~qISe~s~~k~~isL~~~~~~ak~~~V~f~teV~---W- 842 (1078)
T KOG4342|consen 767 PLYWQAWDTEDYSLERYPVLGKAKTVAVGTEGGLRGSVWVLLQISENSRLKQEISLDVGCTDAKLPYVRFHTEVH---W- 842 (1078)
T ss_pred ccchhhhhhhhhceecceecCCCceEEeecCCCcceEEEEEEEcCcccccceEEEEecccccccCCceeeEEEEe---e-
Confidence 6677788533211112332 33334665 5899988776655 57899999997765 7899999987 3
Q ss_pred CCCCcEEEEEEEecCCCCCeEEEccCCCceeecccccCCCccccCCCccccceEeeeeeEEEEeCCcceEEEecccccee
Q 002542 721 DGLGKEVVTHITSTLETNKTFYTDSNGRDFIKRIRDYRTDWDLEVNEPVAGNYYPINLGIYMQDVKKEFSLLVDRALGGS 800 (910)
Q Consensus 721 ~~~~~ev~~~f~t~i~s~~~fyTDsnG~~~ikR~~~~r~~w~~~~~~pv~~nyYPv~s~i~i~D~~~~ltvl~dr~~G~s 800 (910)
.+..|-+.+.|+.+|.|.-+.|. .+|++.||+++|+++|+.+..|... +.+++..|-..+++|||||+||.
T Consensus 843 he~~KFLKVEFPv~irs~fAsYE--tQFGitkRPTHYNTSWDvAkFEVch------hkfaDySe~~~Gvs~LNDCKYGf- 913 (1078)
T KOG4342|consen 843 HEAHKFLKVEFPVRIRSSFASYE--TQFGITKRPTHYNTSWDVAKFEVCH------HKFADYSEHGFGVSLLNDCKYGF- 913 (1078)
T ss_pred hhcCceEEeeccccccccchhhh--hhcccccCCccccccchhhHhHHHH------hhhhhhhhcccceeeeccccccc-
Confidence 26789999999999998767776 8999999999999999987776433 47899999999999999999998
Q ss_pred eccCCeEEEEEeccccCCCCc
Q 002542 801 SIVDGEVELMLHRRLLLDDSR 821 (910)
Q Consensus 801 sl~~G~iElmL~Rr~~~dD~r 821 (910)
|.+..-|.|.|+|+.-.+|.-
T Consensus 914 SthGnlmrLSLLRsPKaPDAh 934 (1078)
T KOG4342|consen 914 STHGNLMRLSLLRSPKAPDAH 934 (1078)
T ss_pred ccccceeeehhhcCCCCCCcc
Confidence 589999999999999999963
No 6
>PF01074 Glyco_hydro_38: Glycosyl hydrolases family 38 N-terminal domain; InterPro: IPR000602 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 38 GH38 from CAZY comprises enzymes with only one known activity; alpha-mannosidase (3.2.1.24 from EC) (3.2.1.114 from EC). Lysosomal alpha-mannosidase is necessary for the catabolism of N-linked carbohydrates released during glycoprotein turnover. The enzyme catalyses the hydrolysis of terminal, non-reducing alpha-D-mannose residues in alpha-D-mannosides, and can cleave all known types of alpha-mannosidic linkages. Defects in the gene cause lysosomal alpha-mannosidosis (AM), a lysosomal storage disease characterised by the accumulation of unbranched oligo-saccharide chains.; GO: 0004559 alpha-mannosidase activity, 0005975 carbohydrate metabolic process; PDB: 2WYI_A 2WYH_A 1O7D_A 3CZN_A 2FYV_A 3D50_A 3EJU_A 3EJS_A 3DX3_A 3BVX_A ....
Probab=100.00 E-value=5.9e-60 Score=512.70 Aligned_cols=270 Identities=31% Similarity=0.501 Sum_probs=215.6
Q ss_pred EEEEEeccCCCCccchhhhheeecCCCcchhHHHHHHHHHHHHHHHhCCCCeEEEechhHHHHHHHhcCHHHHHHHHHHH
Q 002542 41 NVHLVAHTHDDVGWLKTVDQYYVGSNNSIQGACVQNVLDSVIPELLADKNRKFIYVEQAFFQRWWDEQSEAMQHEVKQLV 120 (910)
Q Consensus 41 ~VhlVpHSH~D~gWl~t~~~y~~~~~~~~~~~~v~~il~~vi~~L~~~p~~kF~~~e~~~~~~w~~~~~p~~~~~vk~lV 120 (910)
+||+|||||+|+||++|+++|. ..+.++|+++++.|+++|++||+++|+.++.+| .+..|+.++++|+||
T Consensus 1 ~v~~i~HsH~D~~W~~t~~~~~---------~~~~~~~~~~l~~l~~~~~~~f~~~~~~~~~~~-~~~~p~~~~~~~~lv 70 (275)
T PF01074_consen 1 TVHVIPHSHWDRGWLWTFEEYR---------RYLVNILDSVLDLLEEDPDFRFIDGQTAYLEDY-LEDAPEEFKRIKKLV 70 (275)
T ss_dssp EEEEEEEEB--SSSSS-HHHHH---------HHHHHHHHHHHHHHHH-TT--EECTBCHHHHHH-HHCSGHHHHHHHHHH
T ss_pred CEEEccccccchhhcccHHHHH---------HHHHHHHHHHHHHHHhCCcceEeechhHHHHHH-HHhCCHHHHHHHHHH
Confidence 6999999999999999999995 699999999999999999999999888887555 566999999999999
Q ss_pred hCCcEEEEcceeeeecccCCChHHHHHHHHHHHHHHHHHhCCCCceeeecCCCCCChhhHHHHhhhcCCcEEEEeccchh
Q 002542 121 GSGQLEFINGGMCMHDEAVTHYIDMIDQTTLGHRFIKNEFGVTPRIGWQIDPFGHSAVQAYLLGSEVGFDSFFYGRIDYQ 200 (910)
Q Consensus 121 ~~GrlE~vgGgwv~~Dea~~~~esiIrql~~G~~~l~~~fG~~p~~~w~~D~FGhs~~~p~ll~~~~G~~~~~~~Ri~~~ 200 (910)
++||||+|||||||+||+++++|++||||++|++|++++||++|++||+||+||||+++|+|| +++||++++++|++++
T Consensus 71 ~~Gri~~vgg~~~~~D~~l~~~Eslirql~~G~~~~~~~fg~~~~~~~~~D~FG~~~~lP~il-~~~Gi~~~v~~r~~~~ 149 (275)
T PF01074_consen 71 KEGRIEIVGGWYVQPDENLPSGESLIRQLLYGHKYLRKEFGVRPKVAWQPDSFGHSAQLPQIL-KQFGIKYFVIWRISWN 149 (275)
T ss_dssp HTTSEEESSSBSS-B-SSSS-HHHHHHHHHHHHHHHHHHHTG--SEEEESSSSSB-TCHHHHH-HTTT-SEEEESSS-HH
T ss_pred HhceeEEeCceeeeccccCCCHHHHHHHHhhhHHHHHHhcCCCCCeEEeCCCCCCchhhHHHH-hccCcceEEEeccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred hHhhhccCCceeEEEecCCCCCCCCeeEEeeCCCCCCCCCCCcccccCCCCCccccCcccccccHHHHHHHHHHHHHHhh
Q 002542 201 DRAKRKNEKSLEVVWQGSRSLGSSAQIFAGAFPENYEPPPGGFYFEVNDKYPIIQDNIKLFDYNVQDRVNDFVAAAISQA 280 (910)
Q Consensus 201 ~~~~~~~~~~~eF~W~g~d~~~~gs~i~t~~~~~~Y~~p~~~f~f~~~~~~~~~~d~~~~~~~nv~~~~~~~~~~~~~~~ 280 (910)
.+..++..+.++|+|+|+| |++||||+++.+|..+..+.. . ++++.+++.+++.+
T Consensus 150 ~~~~~~~~~~~~F~W~g~d----Gs~ilt~~~~~~y~~~~~~~~--------------------~-~~~~~~~~~~~~~~ 204 (275)
T PF01074_consen 150 DKNPFKANPQSEFYWQGPD----GSEILTHVLPNYYYGPWYGSE--------------------F-EDADELLEQLRKLA 204 (275)
T ss_dssp HHHHHHHTTSSEEEEE-TT----STEEEEEE-TST-TSHHTTCC--------------------H-HHHHHHHHHHHHHH
T ss_pred cccccccCCCceEEEecCC----CcceeEEecccCCCCCCCCcc--------------------c-ccHHHHHHHHHHHH
Confidence 9998877888999999999 999999999998765301111 1 35678889999999
Q ss_pred cccCCCeEEEeecCCCcccchHHHHHHHHHHHHHHh---c-CCCeEEEEcChhhHHHHHHhcCCCCCCc-CCCCcccc
Q 002542 281 NITRTNHIMWTMGTDFKYQYARTWFRQLDKFIHYVN---M-DGRVNALYSTPSIYTDAKYASNESWPLK-TDDFFPYA 353 (910)
Q Consensus 281 ~~~~t~~il~~~G~Df~~~~a~~~f~~~~~li~~~N---~-~~~~~i~~sT~~~Yf~al~~~~~~~p~~-~gDf~py~ 353 (910)
+.+.++++|+|+|+|. ..+..++++++++| + ...+++++||+++||++++++ .+||++ +|||+||+
T Consensus 205 ~~~~~~~~l~~~G~d~------~~~~~~~~~~~~i~~~~~~~~~~~i~~sT~~~yf~~l~~~-~~~p~~~~~df~~Y~ 275 (275)
T PF01074_consen 205 KKYYTNNILIPYGDDD------DGGPPDEELIEYINEWNEEYPGPKIKYSTLSEYFEALEKE-SELPVHYHGDFPPYA 275 (275)
T ss_dssp CCSSSSEEEEEEEEEH------HHHHHHHHHHHHHHHHHHHGCTEEEEE--HHHHHHHHHHC---B-EE-ES-B-S-E
T ss_pred HhcCCCceEEEeecCC------CCCCcHHHHHHHHHHhcccCCCeEEEECCHHHHHHHHHhc-cCCCcccCCCCCCCC
Confidence 9999999999999982 22334455555554 4 358999999999999999998 999999 99999995
No 7
>COG0383 AMS1 Alpha-mannosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.3e-48 Score=472.37 Aligned_cols=572 Identities=18% Similarity=0.190 Sum_probs=432.0
Q ss_pred eEEEEEeccCCCCccchhhhheeecCCCcchhHHHHHHHHHHHHHHHhCCCCeEEEechhHHHHHHHhcCHHHHHHHHHH
Q 002542 40 LNVHLVAHTHDDVGWLKTVDQYYVGSNNSIQGACVQNVLDSVIPELLADKNRKFIYVEQAFFQRWWDEQSEAMQHEVKQL 119 (910)
Q Consensus 40 ~~VhlVpHSH~D~gWl~t~~~y~~~~~~~~~~~~v~~il~~vi~~L~~~p~~kF~~~e~~~~~~w~~~~~p~~~~~vk~l 119 (910)
.+|+.+.|+|.|..|+|++++.. ........+++..|...|.++|.... ...+.|..+..|+..++ ++
T Consensus 198 ~~I~~~ghahid~aWlw~l~et~---------r~a~ts~~~~~~l~D~~p~~~~~~s~-~~~y~~l~~d~p~l~~~--~~ 265 (943)
T COG0383 198 NEIPAVGHAHIDTAWLWPLDETE---------RKASTSFSLVMNLMDHYPVQKFVQSA-AALYNWLKPDVPFLFSR--PA 265 (943)
T ss_pred ccccccchhhHHHHHhccHHHHH---------HHHhhhhhheecccccChhhhhhhhH-HHHHHHhcCccHHHhhc--cc
Confidence 34999999999999999999998 47888899999999999999999865 44579999999999999 99
Q ss_pred HhCCcEEEEcceeeeecccCCChHHHHHHHHHHHHHHHHHhCCCCceeeecCCCCCChhhHHHHhhhcCCcEEEEeccch
Q 002542 120 VGSGQLEFINGGMCMHDEAVTHYIDMIDQTTLGHRFIKNEFGVTPRIGWQIDPFGHSAVQAYLLGSEVGFDSFFYGRIDY 199 (910)
Q Consensus 120 V~~GrlE~vgGgwv~~Dea~~~~esiIrql~~G~~~l~~~fG~~p~~~w~~D~FGhs~~~p~ll~~~~G~~~~~~~Ri~~ 199 (910)
|+.|+|+.++|+||.+|.++++||+++||+.+|++|+.++||...|+.|.||+||.|+++|||+ ..+|++.|+++++.|
T Consensus 266 v~~~~~~~~~g~~ve~d~n~~sGEslsrq~~~gq~~~~~~f~~ssri~w~pd~fg~s~~Lpqil-~p~gi~~f~t~klaw 344 (943)
T COG0383 266 VEFEQWEIVGGMWVEEDLNTPSGESLSRQFLYGQRFFTEKFGASSRIYWKPDSFGFSGQLPQIL-EPLGIDVFVTTKLAW 344 (943)
T ss_pred ccccceEEeecccccccCCccccchhhhhhhccceeeecccCccceeEeehhccccchhHHHHH-Hhhcchhhhccccch
Confidence 9999999999999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred hhHhhhccCCceeEEEecCCCCCCCCeeEEeeCCCCCCCCCCCcccccCCCCCccccCcccccccHHHHHHHHHHHHHHh
Q 002542 200 QDRAKRKNEKSLEVVWQGSRSLGSSAQIFAGAFPENYEPPPGGFYFEVNDKYPIIQDNIKLFDYNVQDRVNDFVAAAISQ 279 (910)
Q Consensus 200 ~~~~~~~~~~~~eF~W~g~d~~~~gs~i~t~~~~~~Y~~p~~~f~f~~~~~~~~~~d~~~~~~~nv~~~~~~~~~~~~~~ 279 (910)
++.+.++++. |.|++.+ |+++++|..+.+++.. . + .+.. .++..
T Consensus 345 n~tn~~Ph~~---~~w~~~d----g~e~~~hds~~~~~~d-----------------~-------v-~~~~----~~r~~ 388 (943)
T COG0383 345 NDTNRFPHDL---LRWRWKD----GTENLAHDSICGCSSD-----------------P-------V-HREM----EYRFE 388 (943)
T ss_pred hhccCCChhH---heeeccc----ccccceeecCCCCccc-----------------H-------H-HHHH----Hhhhh
Confidence 9999999865 9999999 9999999865333111 0 0 0001 11111
Q ss_pred hcccCCCeEEEeecCC-CcccchHHHHHHHHHHHHHHhcCCCeEEEEcChhhHHHH----HHhcCCCCCCcCCCC-cccc
Q 002542 280 ANITRTNHIMWTMGTD-FKYQYARTWFRQLDKFIHYVNMDGRVNALYSTPSIYTDA----KYASNESWPLKTDDF-FPYA 353 (910)
Q Consensus 280 ~~~~~t~~il~~~G~D-f~~~~a~~~f~~~~~li~~~N~~~~~~i~~sT~~~Yf~a----l~~~~~~~p~~~gDf-~py~ 353 (910)
. .....|+.+|.. +..+...++-.+.. -..+..+|.. +.......|++.|++ +.+|
T Consensus 389 ~---~~~~~~~~~g~gd~ggg~~~dm~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ely~E~h 450 (943)
T COG0383 389 K---INQVGLYLYGYGDGGGGPSIDMLENPE---------------LPIAEGVFNTGVEKKTSTLELVPTWDGELYLELH 450 (943)
T ss_pred h---hccceeEEeeccCCCCCCCHHHHhccc---------------cccccceeeecceeeeeecccccccchhhhhhcc
Confidence 1 233455666653 33333222111111 1122222322 222346689999984 5888
Q ss_pred ccCCCccceeeecchhHHHHHHHHHHHHHHHHHHHHhhc------cCCCCCchHHHHHHHHHhcccccccCCcchhhHH-
Q 002542 354 DRAHAYWTGYFSSRPALKRYVKVMSGYYLAARQLEFYIG------RSETGHNTDSLADALAIAQHHDAVTGTEKQHVAN- 426 (910)
Q Consensus 354 ~~~~~yWtG~yTSR~~~K~~~R~~e~~L~~ae~l~~l~~------~~~~~~~~~~~w~~l~~~QhHDaItGTs~~~V~~- 426 (910)
+ |+|||....|.++|.+|..|+.+|.+.+++. ..++...++++|+.++++|+||.++|++...|+.
T Consensus 451 r-------g~~t~~~~~k~~~r~~e~~l~d~e~~~~~~~~~~~~~~~~~~~~~~~~w~~~l~~qfhdvlpgs~i~~vy~~ 523 (943)
T COG0383 451 R-------GTYTTQAKTKKLNRESEFLLEDAEGISVEAAIIEGDRVTYPYELLNELWKGLLLAQFHDVLPGSSIKEVYSY 523 (943)
T ss_pred C-------ceeehhhhhhhhccccccceecccccchhhhhhccccccCchhhHHHHHHHhhhhhceeeccccceeeechh
Confidence 8 9999999999999999999999998887732 3456778999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCcccccccccccccCCCcccccCCCceEEEEEEcCCCceEeEEE
Q 002542 427 DYAKRLAIGYTEAEEVVATALACLVDSPSDNGCGRSTTRFQQCPLLNISYCPASEIDFSNGKNLVIVIYNSLGWKREDII 506 (910)
Q Consensus 427 dy~~rl~~a~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~ln~s~c~~~~~~l~~~~~~~v~v~Npl~~~r~~~V 506 (910)
+....+......+..++..+++.|.+. ......++|++.|.+.
T Consensus 524 ~a~~~~~~~~~~~~~i~~~~~~~l~~~----------------------------------~~e~~~~~~~~~~~~~--- 566 (943)
T COG0383 524 DALPLLEVVQKGASKIAELALKVLSSQ----------------------------------CLENLFVKNTLSWNGI--- 566 (943)
T ss_pred hHHHHHHhhhccchhhhhhhhhhhhhc----------------------------------cccceEEEeeccCCcc---
Confidence 888888888888888888888877332 1124679999999971
Q ss_pred EEEEecCcEEEEccCCcEEeEEEeCCCccccchhhhhhhhccCCCCCCCCcEEEEEEeecCCCceEEEEEEecCCCCCcc
Q 002542 507 RIPVANGDVTVFNSEGKIIESQLVPPADAFMDLRDYYVRAYLGRNPMVPPKYWLAFPVSVPPLGFSTYTISSVKRGGGHS 586 (910)
Q Consensus 507 ~i~v~~~~~~v~d~~G~~v~~Qi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~f~a~vPplG~~ty~i~~~~~~~~~~ 586 (910)
.+.|+|..+..+..+.+. ...++|++|...+++++....
T Consensus 567 -------~~~v~d~~~~~~~~~~~~------------------------------~~ed~~~~g~~~i~~~~~~~~---- 605 (943)
T COG0383 567 -------SLQVLDKTSGGIYTSQLT------------------------------ALEDVGDIGNEYIYSQPTKTE---- 605 (943)
T ss_pred -------eEEEEEcCCCceehhhhh------------------------------hhhhcCCcccceeEecccccc----
Confidence 455666555444433221 124688899888887432211
Q ss_pred ccccceecccCCCCceEEecceEEEEEECCCC-CcEEEEecCCcceEEeeeeEEEeecCCCCCCCCCCCCcceeEecCCC
Q 002542 587 IRSSIQTFESSDKSTVEVGQGNLKLIFSSDKS-KPINYINNKSLVEESVEQSYSFYPAYNGTNDKAPQNAGAYIFRPNGT 665 (910)
Q Consensus 587 ~~~~~~~~~~~~~~~~~ieN~~~~v~~~~~~G-~l~si~dk~~g~~~~~~~~f~~Y~~~~g~~~~~~~~sGAYiF~P~~~ 665 (910)
......+++..++.++ ++| .+. .|.. .+..+.||.-.+...
T Consensus 606 ------------~~~~~~~~~~~~~~~~-~~gn~~~------------------~~~~-------~~~~~~~w~i~~~~~ 647 (943)
T COG0383 606 ------------PETVIEEKEWKRLIIN-DTGNQLA------------------LIED-------EPAYWDAWNIDKFLE 647 (943)
T ss_pred ------------ccccccccchheeecc-CCCccee------------------eeec-------ccceechhcchhhhh
Confidence 0112233444444444 556 222 1210 122344555544322
Q ss_pred e-eeecCCcceEE-EEEcccEEEEEEEE---cceEEEEEEEecCCCeEEEEEEEcceeccCCCCcEEEEEEEecCCCCCe
Q 002542 666 F-FIKSEGQVPLT-VMRGPILDEVHQKI---NEWIYQVTRLYKGKEHVEVEFIVGPIPVDDGLGKEVVTHITSTLETNKT 740 (910)
Q Consensus 666 ~-~~~~~~~~~i~-v~~Gpl~~~v~~~~---~~~~~~~vrLy~~~~~ie~e~~v~~ip~~~~~~~ev~~~f~t~i~s~~~ 740 (910)
. ...+.... +. +++||+..++++.. .+.+++.|++++++++|+|+++|++. ..+|.+++.|+++++++..
T Consensus 648 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~i~l~~~s~~l~~~t~vd~q----~~~~~lrv~fp~~~~s~~a 722 (943)
T COG0383 648 EELLALTALP-EEAIENGPLVRTVRVSKELTESTITQKVTLYKGSPRLDFKTEVDNQ----VRDHRLRVLFPTDIASDFA 722 (943)
T ss_pred hhhhhhhccc-cchhccccceeeeeeeeeccceEEEEEEEEecCCceeEEEEEEEcc----ccceEEEEEecccccccce
Confidence 1 22222223 33 67999999988765 46789999999999999999999865 6799999999999998543
Q ss_pred EEEccCCCceeecccccCCCccccCCCccccceEeeeeeEEEEeCCcc--eEEEeccccceeeccCCeEEEEEeccc
Q 002542 741 FYTDSNGRDFIKRIRDYRTDWDLEVNEPVAGNYYPINLGIYMQDVKKE--FSLLVDRALGGSSIVDGEVELMLHRRL 815 (910)
Q Consensus 741 fyTDsnG~~~ikR~~~~r~~w~~~~~~pv~~nyYPv~s~i~i~D~~~~--ltvl~dr~~G~ssl~~G~iElmL~Rr~ 815 (910)
..| ..|+.++|+++.+++|+....+ -|++.++.+.|...+ +++++|++||++ .+++.|.|+|.|..
T Consensus 723 -~~d-~~fg~v~Rp~~~~~~W~~a~~e------~p~~~~vdls~~~~g~~vs~ln~~kYg~~-~~~~~l~lTLLrs~ 790 (943)
T COG0383 723 -TAD-IPFGVVERPTHPNTSWENARFE------VPLQKFVDLSDGEYGVTVSLLGDCKYGIS-THGNLLALTLLRSV 790 (943)
T ss_pred -ecc-ccceeeccCCCCchhhhcccCc------chhhccccccCCccceeEeccCCcceeEe-ccCCEEEEEecccc
Confidence 334 9999999999999999865443 368899999999999 777999999996 59999999999998
No 8
>PF07748 Glyco_hydro_38C: Glycosyl hydrolases family 38 C-terminal domain; InterPro: IPR011682 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 38 GH38 from CAZY comprises enzymes with only one known activity; alpha-mannosidase (3.2.1.24 from EC) (3.2.1.114 from EC). This domain is found at the C terminus of glycosyl hydrolases from family 38.; GO: 0015923 mannosidase activity, 0006013 mannose metabolic process; PDB: 2WYI_A 2WYH_A 3LVT_A 3CZN_A 2FYV_A 3D50_A 3EJU_A 3EJS_A 3DX3_A 3BVX_A ....
Probab=100.00 E-value=1.1e-38 Score=372.25 Aligned_cols=360 Identities=26% Similarity=0.404 Sum_probs=244.2
Q ss_pred EEEEEEcCCCceEeEEEEEEEecCcEEEEccCCcEEeEEEeCCCccccchhhhhhhhccCCCCCCCCcEEEEEEeecCCC
Q 002542 490 LVIVIYNSLGWKREDIIRIPVANGDVTVFNSEGKIIESQLVPPADAFMDLRDYYVRAYLGRNPMVPPKYWLAFPVSVPPL 569 (910)
Q Consensus 490 ~~v~v~Npl~~~r~~~V~i~v~~~~~~v~d~~G~~v~~Qi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~f~a~vPpl 569 (910)
++|+|||||+|+|+++|+|++..+.+.+.|..|++|++|+++... ....++|.|.++||||
T Consensus 1 ~~vvvfN~l~~~r~~vv~i~v~~~~~~~~~~~g~~v~~qi~~~~~-------------------~~~~~~l~f~~~vPal 61 (457)
T PF07748_consen 1 FPVVVFNPLPWPRSEVVEIPVNTPNVSVYDADGKPVPSQIIPEPY-------------------STGRYELLFVVDVPAL 61 (457)
T ss_dssp EEEEEEE-SSS-EEEEEEEEEEECEEEEECSTSHEEHCEEEEEEE-------------------EEEEEEEEEEEEE-TT
T ss_pred CEEEEEECCCCcEEEEEEEEeccCceEEEecCCcEeeEEEEeccC-------------------CCCceEEEEEeccCCc
Confidence 579999999999999999999999999999999999999998211 1235789998899999
Q ss_pred ceEEEEEEecCCCCCccccccceecccCCCCceEEecceEEEEEECCCCCcEEEEecCCcceEE--eeeeEEEeecCCCC
Q 002542 570 GFSTYTISSVKRGGGHSIRSSIQTFESSDKSTVEVGQGNLKLIFSSDKSKPINYINNKSLVEES--VEQSYSFYPAYNGT 647 (910)
Q Consensus 570 G~~ty~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ieN~~~~v~~~~~~G~l~si~dk~~g~~~~--~~~~f~~Y~~~~g~ 647 (910)
||++|.|........... ... ....+...|||++|+|+|++.+|.|.+|+||++|+++. ..+++..|....++
T Consensus 62 Gy~~~~i~~~~~~~~~~~-~~~----~~~~~~~~leN~~~~v~~~~~tG~i~sl~dk~~g~~~~~~~~~~~~~y~~~~~~ 136 (457)
T PF07748_consen 62 GYKTYRIVEGESSEPSNE-ASI----AKDSGDNVLENEFYKVTFDPNTGGIKSLYDKKTGREYVDQDGNDFYIYEDIDGD 136 (457)
T ss_dssp EEEEEEEEECSS--TTC---CE----EETT-TTEEETSSEEEEE-TTTSSEEEEEETTTS-EEEEEECEEEEEEEBTTSC
T ss_pred eeEEEEeecccccccccc-cee----ecceeeEEEEccEEEEEEeCCCCeEEEEEEccCCeEEEeecCCceeEecccccc
Confidence 999999998765432210 000 01114589999999999996669999999999999999 88899999764442
Q ss_pred CC---CCCCCCcceeEecCCCeeeecCCcceEEEEEcc--cEEEEEEEEcceEEEEEEEecCCCeEEEEEEEcceeccCC
Q 002542 648 ND---KAPQNAGAYIFRPNGTFFIKSEGQVPLTVMRGP--ILDEVHQKINEWIYQVTRLYKGKEHVEVEFIVGPIPVDDG 722 (910)
Q Consensus 648 ~~---~~~~~sGAYiF~P~~~~~~~~~~~~~i~v~~Gp--l~~~v~~~~~~~~~~~vrLy~~~~~ie~e~~v~~ip~~~~ 722 (910)
.. .....+|+|.|.|++.....+.-...+. ..+. ++.++.....+.++++++||+++++|||+++|+|.+.
T Consensus 137 ~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~~-~p~~~~~~~~~~~~~~~~i~~~i~L~~~~~~ie~~~~vdn~~~--- 212 (457)
T PF07748_consen 137 YDISPLELQRSGAYLFVEDGPLRSSIRVEYKFE-LPKNLSLVKRSEQTGSSRITQTIRLYKGSPRIEFETEVDNWAE--- 212 (457)
T ss_dssp TTE-SCCCGSEECCEEEEESSSEEEEEEEEEEE-EESCBECEEEESCEEEEEEEEEEEEETTESSEEEEEEEEE-TT---
T ss_pred ccccccccccCceEEEEecCCceEEEEEEEEEe-ccCCcEEEEEEEeccceEEEEEEEEecCceEEEEEEEeccccc---
Confidence 11 1233688999988765311100000110 1111 3344444456789999999999999999999997632
Q ss_pred CCc-EEEEEEEecCCCCCeEEEccCCCceeecccccCCCccccCCCccccceEeeeeeEEEEeCCcceEEEeccccceee
Q 002542 723 LGK-EVVTHITSTLETNKTFYTDSNGRDFIKRIRDYRTDWDLEVNEPVAGNYYPINLGIYMQDVKKEFSLLVDRALGGSS 801 (910)
Q Consensus 723 ~~~-ev~~~f~t~i~s~~~fyTDsnG~~~ikR~~~~r~~w~~~~~~pv~~nyYPv~s~i~i~D~~~~ltvl~dr~~G~ss 801 (910)
..+ +++++|+|+|.++..||+|.+|+.+.+|+++. ..|+++|||||...++|.|.+.+|+|+||+++|+++
T Consensus 213 ~~~~~l~~~f~t~i~~~~~~~~~~fG~~~r~~~~~~--------~~~~~~~~~p~~~~~~v~~~~~~l~i~~d~~~g~~~ 284 (457)
T PF07748_consen 213 DHRKELRVRFPTNIDSDEAFYDDQFGFIERKRPTHP--------NTPWEANYYPVPSHAFVDDSDSRLAILNDGKYGYES 284 (457)
T ss_dssp SCEEEEEEEEEES-S-TCEEEEESTTEEEEECESST--------TTTCGGG-EEECSCCEEEECSECEEEEESS-EEEEE
T ss_pred CCceeEEEEeecCCCCCCEEEECCCCeEEecCCccc--------cCCcccccCCCcceEEEEcCCCCEEEEcCCCcceEe
Confidence 223 69999999999999999985555444335442 367788999999999999999889999999999998
Q ss_pred cc-CCeEEEEEeccccCCCCcCcccccccccccccccCCeEEEeEEEEEeecCCCcchhcccchhhhcCCceeeeeccCC
Q 002542 802 IV-DGEVELMLHRRLLLDDSRGVAEALNETDCVLDECKGLTIQGKYYFRIDTIGDGAKWRRTFGQEIYSPPLLAFTEEDG 880 (910)
Q Consensus 802 l~-~G~iElmL~Rr~~~dD~rGvge~l~e~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~p~~~~~~~~~~ 880 (910)
+. +|+|+|||||++..||++|+++ |.|.+.........-.+.+..+++|++++....
T Consensus 285 ~~~~g~l~ltL~R~~~~D~g~~~~~--------------------~~l~~~~~~~~~~~~~~~a~~l~~Pl~~~~~~~-- 342 (457)
T PF07748_consen 285 LDQDGELELTLLRRPSQDDGRGVFR--------------------YALYPHSGSWDEADVVQEAYELNQPLIVFNSSN-- 342 (457)
T ss_dssp CTTTTEEEEEEEEEBSCG-SSSEEC--------------------CEEEEEEEEEEEEECHHCHHHHTS-EEEESS----
T ss_pred ccCCCeEEEEEeecccccCCccEEE--------------------EEEEEeccccccccchhhhhhccCccEEeeccc--
Confidence 87 9999999999999999999881 333333222111111224558899998882211
Q ss_pred CcccCCCcccccCCCC-CCCCCccceeecc
Q 002542 881 DSWRNSHVTTFSGIDS-SYSLPDNVAIITL 909 (910)
Q Consensus 881 ~~~~~~~~~~~~~~~~-~~~lp~~vhlltl 909 (910)
. .......++++.. ...+|+++|+.+|
T Consensus 343 -~-~~~~~~~~~~~~~~~~~~~~~~~~~~l 370 (457)
T PF07748_consen 343 -I-QARQLNSFSGLSLPPEESPLNIHLLNL 370 (457)
T ss_dssp -T-TBEE--CE-TCS--SSEESTCECEEEE
T ss_pred -c-ccccccCCCcccccccccccccCCCcc
Confidence 1 1122334454432 1358999999886
No 9
>PF09261 Alpha-mann_mid: Alpha mannosidase, middle domain; InterPro: IPR015341 Members of this entry belong to the glycosyl hydrolase family 38, This domain, which is found in the central region adopts a structure consisting of three alpha helices, in an immunoglobulin/albumin-binding domain-like fold. The domain is predominantly found in the enzyme alpha-mannosidase []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0008270 zinc ion binding; PDB: 1O7D_C 3LVT_A 3CZN_A 2FYV_A 3D50_A 3EJU_A 3EJS_A 3DX3_A 3BVX_A 3BUQ_A ....
Probab=99.83 E-value=1.4e-21 Score=169.54 Aligned_cols=75 Identities=35% Similarity=0.549 Sum_probs=64.9
Q ss_pred CccceeeecchhHHHHHHHHHHHHHHHHHHHHhhccC-----CCCCchHHHHHHHHHhcccccccCCcchhhHHHHHHHH
Q 002542 358 AYWTGYFSSRPALKRYVKVMSGYYLAARQLEFYIGRS-----ETGHNTDSLADALAIAQHHDAVTGTEKQHVANDYAKRL 432 (910)
Q Consensus 358 ~yWtG~yTSR~~~K~~~R~~e~~L~~ae~l~~l~~~~-----~~~~~~~~~w~~l~~~QhHDaItGTs~~~V~~dy~~rl 432 (910)
+||+|||||||.+|+++|++|++|+.||.|.+++... ++...++++|+.|+++||||+||||++++|++||.+||
T Consensus 1 e~~~G~~tSr~~~K~~~r~~e~~L~~~E~l~~~~~~~~~~~~~~~~~l~~~w~~l~~~q~HD~i~GT~~~~V~~d~~~rl 80 (80)
T PF09261_consen 1 EYWTGYYTSRPDIKQLNRRAENLLRAAEPLAALAALLGNGGDYPQEELEKAWKALLLNQFHDAITGTSIDSVYDDYLRRL 80 (80)
T ss_dssp EES-GGGCSTHHHHHHHHHHHHHHHCHHHHHHHCHHH--HSG-HHHHHHHHHHHHHCTTBTTTTTS-S-HHHHHHHHHHH
T ss_pred CCcceeeeCHHHHHHHHHHHHHHHHHHHHHHHHHhHhccCccccHHHHHHHHHHHHHhccCCCCCCcChHHHHHHHHHhC
Confidence 4899999999999999999999999999999985432 44567899999999999999999999999999999886
No 10
>smart00872 Alpha-mann_mid Alpha mannosidase, middle domain. Members of this entry belong to the glycosyl hydrolase family 38, This domain, which is found in the central region adopts a structure consisting of three alpha helices, in an immunoglobulin/albumin-binding domain-like fold. The domain is predominantly found in the enzyme alpha-mannosidase PUBMED:12634058.
Probab=99.80 E-value=5e-20 Score=159.44 Aligned_cols=74 Identities=36% Similarity=0.534 Sum_probs=68.0
Q ss_pred ccceeeecchhHHHHHHHHHHHHHHHHHHHHhh-----ccCCCCCchHHHHHHHHHhcccccccCCcchhhHHHHHHHH
Q 002542 359 YWTGYFSSRPALKRYVKVMSGYYLAARQLEFYI-----GRSETGHNTDSLADALAIAQHHDAVTGTEKQHVANDYAKRL 432 (910)
Q Consensus 359 yWtG~yTSR~~~K~~~R~~e~~L~~ae~l~~l~-----~~~~~~~~~~~~w~~l~~~QhHDaItGTs~~~V~~dy~~rl 432 (910)
||+|||||||.+|+++|++|++|+.+|.+.+++ +..++...++.+|+.|+++||||+||||++++|++||..|+
T Consensus 1 ~h~G~~Tsr~~~K~~~r~~E~~L~~~e~~~~~~~~~~~~~~~~~~~l~~~wk~ll~~q~HD~i~Gt~~~~V~~d~~~r~ 79 (79)
T smart00872 1 YHRGTYTSRPYLKRLNRRLESLLRAAEELAALAALLLLGYKYPSEQLEELWKALLLNQFHDAITGTSIDEVYDDYETRL 79 (79)
T ss_pred CCCceecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhcCcccCCccCcHHHHHHHHHhC
Confidence 699999999999999999999999999999885 34566778999999999999999999999999999999874
No 11
>COG0383 AMS1 Alpha-mannosidase [Carbohydrate transport and metabolism]
Probab=99.78 E-value=9e-21 Score=231.77 Aligned_cols=358 Identities=16% Similarity=0.108 Sum_probs=262.0
Q ss_pred CceEEEEEeccCCCCccchhhhheeecCCCcchhHHHHHHHHHHHHHHHhCCC-CeEEEechhHHHHHHHhcCHHHHHHH
Q 002542 38 GKLNVHLVAHTHDDVGWLKTVDQYYVGSNNSIQGACVQNVLDSVIPELLADKN-RKFIYVEQAFFQRWWDEQSEAMQHEV 116 (910)
Q Consensus 38 ~~~~VhlVpHSH~D~gWl~t~~~y~~~~~~~~~~~~v~~il~~vi~~L~~~p~-~kF~~~e~~~~~~w~~~~~p~~~~~v 116 (910)
.+..+|++.|+|||++|+.+.+.+.. .+...++.+++.++++|. .-|..+++....+.+....|+.++++
T Consensus 2 ~~~~~~ii~~~~wdrew~~~~e~~~~---------~~~~~~~~i~~~~~~~~~~~~~~~d~qt~~l~d~l~v~~~~~~~~ 72 (943)
T COG0383 2 LKKKVHIISHSHWDREWYFTSESHRI---------LLDELFEEIIELLQKDPEFAGFHLDGQTIWLDDYLAVPPELKDRV 72 (943)
T ss_pred CccccccchhhhhhhhceeeccceEe---------echhhhhhhhhccccCcccceecCccceeeeeeeEEecccchhhH
Confidence 34567999999999999999999886 556669999999999994 44888888876677777899999999
Q ss_pred HHHHhCCcEEEEcceeeeecccCCChHHHHHHHHHHHHHHHHHhCCCCceeeecCCCCCChhhHHHHhhhcCCcEEEEec
Q 002542 117 KQLVGSGQLEFINGGMCMHDEAVTHYIDMIDQTTLGHRFIKNEFGVTPRIGWQIDPFGHSAVQAYLLGSEVGFDSFFYGR 196 (910)
Q Consensus 117 k~lV~~GrlE~vgGgwv~~Dea~~~~esiIrql~~G~~~l~~~fG~~p~~~w~~D~FGhs~~~p~ll~~~~G~~~~~~~R 196 (910)
+.+++.|++ .+|.++.+.|.+.+++|+.+|++++|..+ ...+|...+.||.+|.||+..+.|+++ ..+||+.+.|+|
T Consensus 73 ~~~~~~~~l-~ig~~~~~~~~~~~~~e~~~rn~l~~~~~-~~~~~~~~~~g~~~d~~g~~~qa~~~~-~~~~i~~~~f~r 149 (943)
T COG0383 73 KLLIASGKL-GIGPWYTQTDTFILSGESNVRNLLIGEFD-AERFGKAMKLGYFPDTFGNLGQAPQLY-ENAGISAVAFGR 149 (943)
T ss_pred HHHHhhcCc-cccCCCCeeEEEEeccccceeeeecchHH-HHHhhhhhccccccccchhhhhhhHHH-HhcCCchhhccc
Confidence 999999999 78788899999999999999999999995 667779999999999999999999999 899999999999
Q ss_pred cchhh------Hh---hhccCCceeEEEecCCCCCCCCeeEEeeCCCCCCCCCCCcccccCCCCCccccCcccccccHHH
Q 002542 197 IDYQD------RA---KRKNEKSLEVVWQGSRSLGSSAQIFAGAFPENYEPPPGGFYFEVNDKYPIIQDNIKLFDYNVQD 267 (910)
Q Consensus 197 i~~~~------~~---~~~~~~~~eF~W~g~d~~~~gs~i~t~~~~~~Y~~p~~~f~f~~~~~~~~~~d~~~~~~~nv~~ 267 (910)
+.... .. ......-.|..|.+++ |++++.+.++..|..+ ....-. .-.-++.
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~ei~~~~~~----~~~~l~il~~~~y~~g-~~I~~~--------------ghahid~ 210 (943)
T COG0383 150 GAALIGFGQLVLFELLEAYGSDFSEITWSEPD----GSQVLGILLANGYSNG-NEIPAV--------------GHAHIDT 210 (943)
T ss_pred ccchhhcccchhhhhhhHhcCcCcccccccCC----chhhHHHHHHHHhhcc-cccccc--------------chhhHHH
Confidence 75311 10 1122344567899888 8888888888888877 221100 0011222
Q ss_pred HHHHHHHHHHHhhcccCCCeEEEeecCCCcccchHHHHHHHHHHHHHHhcC-CCeEEEEcC----hhhHHHHHHhc-CCC
Q 002542 268 RVNDFVAAAISQANITRTNHIMWTMGTDFKYQYARTWFRQLDKFIHYVNMD-GRVNALYST----PSIYTDAKYAS-NES 341 (910)
Q Consensus 268 ~~~~~~~~~~~~~~~~~t~~il~~~G~Df~~~~a~~~f~~~~~li~~~N~~-~~~~i~~sT----~~~Yf~al~~~-~~~ 341 (910)
.+..-++..++.+ .+..++++.|+|..+.. .++...+.+.|.- ......|+. ...|+...... ...
T Consensus 211 aWlw~l~et~r~a---~ts~~~~~~l~D~~p~~-----~~~~s~~~~y~~l~~d~p~l~~~~~v~~~~~~~~~g~~ve~d 282 (943)
T COG0383 211 AWLWPLDETERKA---STSFSLVMNLMDHYPVQ-----KFVQSAAALYNWLKPDVPFLFSRPAVEFEQWEIVGGMWVEED 282 (943)
T ss_pred HHhccHHHHHHHH---hhhhhheecccccChhh-----hhhhhHHHHHHHhcCccHHHhhcccccccceEEeeccccccc
Confidence 3333344444444 67778899999987775 5777777777742 233344444 44444443322 234
Q ss_pred CCCcCCCCcc-ccccCCCccc--eeeecchhHHHHHHHHHHHHH-HHHHHHH-------h---hccCCCCCchHHHHHHH
Q 002542 342 WPLKTDDFFP-YADRAHAYWT--GYFSSRPALKRYVKVMSGYYL-AARQLEF-------Y---IGRSETGHNTDSLADAL 407 (910)
Q Consensus 342 ~p~~~gDf~p-y~~~~~~yWt--G~yTSR~~~K~~~R~~e~~L~-~ae~l~~-------l---~~~~~~~~~~~~~w~~l 407 (910)
+++.+||+.. -..+...|.+ ..-+||..+|..+-..+..|- -++.+.. + .+..+|...+.-.|+.+
T Consensus 283 ~n~~sGEslsrq~~~gq~~~~~~f~~ssri~w~pd~fg~s~~Lpqil~p~gi~~f~t~klawn~tn~~Ph~~~~w~~~dg 362 (943)
T COG0383 283 LNTPSGESLSRQFLYGQRFFTEKFGASSRIYWKPDSFGFSGQLPQILEPLGIDVFVTTKLAWNDTNRFPHDLLRWRWKDG 362 (943)
T ss_pred CCccccchhhhhhhccceeeecccCccceeEeehhccccchhHHHHHHhhcchhhhccccchhhccCCChhHheeecccc
Confidence 6888999862 1122112222 445899999999877777664 2233322 1 12345566667789999
Q ss_pred HHhcccccccCCcchhhHHHHHHHHHH
Q 002542 408 AIAQHHDAVTGTEKQHVANDYAKRLAI 434 (910)
Q Consensus 408 ~~~QhHDaItGTs~~~V~~dy~~rl~~ 434 (910)
..++.||++|||+.+.|+.+...|...
T Consensus 363 ~e~~~hds~~~~~~d~v~~~~~~r~~~ 389 (943)
T COG0383 363 TENLAHDSICGCSSDPVHREMEYRFEK 389 (943)
T ss_pred cccceeecCCCCcccHHHHHHHhhhhh
Confidence 999999999999999999999988765
No 12
>PF03065 Glyco_hydro_57: Glycosyl hydrolase family 57; InterPro: IPR004300 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 57 GH57 from CAZY comprises enzymes with two known activities; alpha-amylase (3.2.1.1 from EC) and 4-alpha-glucanotransferase (2.4.1 from EC).; GO: 0003824 catalytic activity, 0005975 carbohydrate metabolic process; PDB: 1K1X_B 1K1W_A 1K1Y_A 3N98_A 3N8T_A 3N92_A 1UFA_A 3P0B_A.
Probab=98.50 E-value=4.2e-07 Score=102.72 Aligned_cols=121 Identities=16% Similarity=0.187 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHHhCCCCeEEEechhHHHHHHHhcCHHH-----------------------------------------
Q 002542 74 VQNVLDSVIPELLADKNRKFIYVEQAFFQRWWDEQSEAM----------------------------------------- 112 (910)
Q Consensus 74 v~~il~~vi~~L~~~p~~kF~~~e~~~~~~w~~~~~p~~----------------------------------------- 112 (910)
..+.+--++..|++.|+.|++.+=...+.+++++..+..
T Consensus 28 ~~~~Y~pll~~l~~~~~~k~t~~lSp~LleqL~d~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~f~~~~~~~~l~~~~~ 107 (360)
T PF03065_consen 28 ATECYLPLLRLLERLPDFKLTFSLSPSLLEQLEDYAPQEYDQYLERSLARAELLREEKEFLLRANFTREDFERLLDFFRE 107 (360)
T ss_dssp HHHTHHHHHHHHHHHHH--EEEEE-HHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHTTSTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHhCcCccEEEEECHHHHHHHHhhhhhcccccccccccccccccccccccccccccccccccccccccc
Confidence 344455677777777778877765555667887777777
Q ss_pred -----HHHHHHHHhCCcEEEEcceeeeecccCCCh-HHHHHHHHHHHHHHHHHhCCCCceeeecCCCCCChhhHHHHhhh
Q 002542 113 -----QHEVKQLVGSGQLEFINGGMCMHDEAVTHY-IDMIDQTTLGHRFIKNEFGVTPRIGWQIDPFGHSAVQAYLLGSE 186 (910)
Q Consensus 113 -----~~~vk~lV~~GrlE~vgGgwv~~Dea~~~~-esiIrql~~G~~~l~~~fG~~p~~~w~~D~FGhs~~~p~ll~~~ 186 (910)
.+.+|+|+++|++|+++++|..+=-.+..- +++..|+..|.+.+++.||.+|+..|.|. .+.+..+..+| ++
T Consensus 108 ~~~~ii~~~~~l~~~G~iEll~~~~~h~ilpl~~~~~d~~~Qi~~~~~~~~~~FG~~P~G~W~pE-~a~~~~l~~~l-~~ 185 (360)
T PF03065_consen 108 IIGDIIEAFRELAERGQIELLTSPYYHPILPLLPDPEDFRAQIEMGREYFKKHFGRRPRGFWLPE-CAYSPGLEEIL-AE 185 (360)
T ss_dssp TTT-HHHHHHHHHHTTSEEEEEE-TT-B-GGGSSHHHHHHHHHHHHHHHHHHHHSS--SBEE-GG-G-B-TTHHHHH-HH
T ss_pred hhhhhHHHHHHHHHCCCEEEEeCchHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCCceECcc-cccCHHHHHHH-HH
Confidence 899999999999999999998888777888 99999999999999999999999999998 89999999999 99
Q ss_pred cCCcEEEEec
Q 002542 187 VGFDSFFYGR 196 (910)
Q Consensus 187 ~G~~~~~~~R 196 (910)
+||+++++.-
T Consensus 186 ~Gi~~~i~d~ 195 (360)
T PF03065_consen 186 AGIRYTILDG 195 (360)
T ss_dssp TT--EEEEEC
T ss_pred cCCEEEEECc
Confidence 9999999764
No 13
>COG1543 Uncharacterized conserved protein [Function unknown]
Probab=96.45 E-value=0.0071 Score=67.56 Aligned_cols=122 Identities=17% Similarity=0.246 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHHHHhCCCCe----------EEEechhHHHHHHHhcCHHHHHHHHHHHhCCcEEEEcceeeeeccc-CC
Q 002542 72 ACVQNVLDSVIPELLADKNRK----------FIYVEQAFFQRWWDEQSEAMQHEVKQLVGSGQLEFINGGMCMHDEA-VT 140 (910)
Q Consensus 72 ~~v~~il~~vi~~L~~~p~~k----------F~~~e~~~~~~w~~~~~p~~~~~vk~lV~~GrlE~vgGgwv~~Dea-~~ 140 (910)
.+..+-++..++.+++.-.|. |..-+-.-....|+..+....++||++.+.|.+|+++.+.+-.--- +-
T Consensus 75 ~ry~~~Le~~~el~e~e~~R~~~~~~~~~~~~~~~~~~~~~~~~e~~d~~ll~~f~~~~~~g~ieilts~athg~lPll~ 154 (504)
T COG1543 75 DRYLRYLEWKIELSEKEEKRYADQSLRELAEFYIPEFLNARGYWEQYDGNLLEAFKELQRSGGIEILTSAATHGYLPLLG 154 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCceeeeehhhheehhhcC
Confidence 455566676666666543321 1111111134678888999999999999999999998877543322 23
Q ss_pred ChHHHHHHHHHHHHHHHHHhCCCCceeeecCCCCCChhhHHHHhhhcCCcEEEEe
Q 002542 141 HYIDMIDQTTLGHRFIKNEFGVTPRIGWQIDPFGHSAVQAYLLGSEVGFDSFFYG 195 (910)
Q Consensus 141 ~~esiIrql~~G~~~l~~~fG~~p~~~w~~D~FGhs~~~p~ll~~~~G~~~~~~~ 195 (910)
.-|++=-|+..|.+-..++||..|+--|.|. =++.+.++.+| +..||+++++-
T Consensus 155 ~peAi~AQi~~g~~~ye~~fg~~P~GiWlPE-cay~pgie~~l-~~~Gi~yf~vd 207 (504)
T COG1543 155 GPEAIEAQILTGIELYEEHFGLAPKGIWLPE-CAYAPGIERIL-KDAGIEYFFVD 207 (504)
T ss_pred CchhhHHHHHHHHHHHHHHhCCCCCceechh-hccccchHHHH-HhcCceEEEec
Confidence 3488999999999988889999999999995 79999999999 89999999975
No 14
>COG1449 Alpha-amylase/alpha-mannosidase [Carbohydrate transport and metabolism]
Probab=95.64 E-value=0.65 Score=55.90 Aligned_cols=97 Identities=16% Similarity=0.230 Sum_probs=79.4
Q ss_pred EEEechhHHHHHHHhcCHHHHHHHHHHHhCCcEEEEcceeeeecccCC----ChHHHHHHHHHHHHHHHHHhCCCCceee
Q 002542 93 FIYVEQAFFQRWWDEQSEAMQHEVKQLVGSGQLEFINGGMCMHDEAVT----HYIDMIDQTTLGHRFIKNEFGVTPRIGW 168 (910)
Q Consensus 93 F~~~e~~~~~~w~~~~~p~~~~~vk~lV~~GrlE~vgGgwv~~Dea~~----~~esiIrql~~G~~~l~~~fG~~p~~~w 168 (910)
|++++..-+..+-..-.++..+.+|++++.|+.|++.-.|--+=-.+- -++++++|+..+.+..++.||+.|+..|
T Consensus 162 ys~~g~~~il~~~~~~~~~vl~~~r~l~e~g~~e~~~~pyyHsl~pl~~d~gw~~d~~~qv~~~~~~~~elfG~~p~~~~ 241 (615)
T COG1449 162 YSLSGGETILEQQLDEAPRVLEAFRELAESGKVELTASPYYHSLIPLLADDGWYEDFKEQVMMSRELYKELFGVWPSGFW 241 (615)
T ss_pred eeccccHHHHHHHHHHHhhhHHHHHHHHhcCceEEEecccccccchhcccCCchHHHHHHHHHHHHHHHHHhCCCCcccc
Confidence 777663344455556678899999999999999999888844322222 4569999999999999999999999999
Q ss_pred ecCCCCCChhhHHHHhhhcCCcE
Q 002542 169 QIDPFGHSAVQAYLLGSEVGFDS 191 (910)
Q Consensus 169 ~~D~FGhs~~~p~ll~~~~G~~~ 191 (910)
.+- +=.+.++..++ +++|+..
T Consensus 242 ~tE-l~y~~~i~~~~-~e~G~~~ 262 (615)
T COG1449 242 NTE-LAYNDQILEYF-EESGFSW 262 (615)
T ss_pred Chh-hhccHHHHHHH-HHcCCcc
Confidence 987 88999999999 9999995
No 15
>PF01522 Polysacc_deac_1: Polysaccharide deacetylase; InterPro: IPR002509 This domain is found in polysaccharide deacetylase. This family of polysaccharide deacetylases includes NodB (nodulation protein B from Rhizobium) which is a chitooligosaccharide deacetylase []. It also includes chitin deacetylase from yeast [], and endoxylanases which hydrolyses glucosidic bonds in xylan [].; GO: 0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, 0005975 carbohydrate metabolic process; PDB: 2IW0_A 2CC0_B 2VYO_A 2J13_A 2C71_A 2C79_A 1W1A_1 1W1B_1 1W17_A 1NY1_B ....
Probab=95.50 E-value=0.15 Score=47.70 Aligned_cols=104 Identities=17% Similarity=0.277 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHhCCC-CeEEEechhHHHHHHHhcCHHHHHHHHHHHhCCcEEEEcceeeeecccCCChHHHHHHHHHHH
Q 002542 75 QNVLDSVIPELLADKN-RKFIYVEQAFFQRWWDEQSEAMQHEVKQLVGSGQLEFINGGMCMHDEAVTHYIDMIDQTTLGH 153 (910)
Q Consensus 75 ~~il~~vi~~L~~~p~-~kF~~~e~~~~~~w~~~~~p~~~~~vk~lV~~GrlE~vgGgwv~~Dea~~~~esiIrql~~G~ 153 (910)
......+++.|+++.- ..|-.... +..+ ..+.+++++++| +|+.+-||.-++....+.+.+.+++..+.
T Consensus 17 ~~~~~~~~~~l~~~~i~at~fv~~~-~~~~--------~~~~l~~l~~~G-~ei~~H~~~H~~~~~~~~~~~~~ei~~~~ 86 (123)
T PF01522_consen 17 RDNYDRLLPLLKKYGIPATFFVIGS-WVER--------YPDQLRELAAAG-HEIGNHGWSHPNLSTLSPEELRREIERSR 86 (123)
T ss_dssp HTHHHHHHHHHHHTT--EEEEE-HH-HHHH--------HHHHHHHHHHTT--EEEEE-SSSSCGGGS-HHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhcccceeeeeccc-cccc--------ccccchhHHHHH-HHHHhcCCcccccccCCHHHHHHHHHHHH
Confidence 3456778888888752 23433321 2222 268899999999 99999999988888899999999999999
Q ss_pred HHHHHHhCCCCceeeecCCCCC-ChhhHHHHhhhcCCcE
Q 002542 154 RFIKNEFGVTPRIGWQIDPFGH-SAVQAYLLGSEVGFDS 191 (910)
Q Consensus 154 ~~l~~~fG~~p~~~w~~D~FGh-s~~~p~ll~~~~G~~~ 191 (910)
++|++.+|..|+. -.=|||. +..+-+++ +++||++
T Consensus 87 ~~l~~~~g~~~~~--f~~P~g~~~~~~~~~l-~~~G~~y 122 (123)
T PF01522_consen 87 EILEEITGRPPKG--FRYPFGSYDDNTLQAL-REAGYKY 122 (123)
T ss_dssp HHHHHHHSSEESE--EE-GGGEECHHHHHHH-HHTT-EE
T ss_pred HHHHHHhCCCCcE--EECCCCCCCHHHHHHH-HHcCCCc
Confidence 9999999995443 4457776 77778999 8999986
No 16
>TIGR03212 uraD_N-term-dom putative urate catabolism protein. This model represents a protein that is predominantly found just upstream of the UraD protein (OHCU decarboxylase) and in a number of instances as a N-terminal fusion with it. UraD itself catalyzes the last step in the catabolism of urate to allantoate. The function of this protein is presently unknown. It shows homology with the pfam01522 polysaccharide deacetylase domain family.
Probab=93.94 E-value=6.6 Score=43.10 Aligned_cols=111 Identities=15% Similarity=0.078 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHHhCCC-CeEEEechhHHHHHHHhcCHHHHHHHHHHHhCCcEEEEcceeeeecccCCChHHHHHHHHHH
Q 002542 74 VQNVLDSVIPELLADKN-RKFIYVEQAFFQRWWDEQSEAMQHEVKQLVGSGQLEFINGGMCMHDEAVTHYIDMIDQTTLG 152 (910)
Q Consensus 74 v~~il~~vi~~L~~~p~-~kF~~~e~~~~~~w~~~~~p~~~~~vk~lV~~GrlE~vgGgwv~~Dea~~~~esiIrql~~G 152 (910)
.+.=+-.+++.|.++-- .+|-... |+.+.+|+ .+|+++++| .||.+=||...+-..-+.+...++|..+
T Consensus 75 ~rvG~~RiLdlL~~~gv~aTffv~g------~~~e~~P~---~v~~i~~~G-HEIg~Hg~~H~~~~~ls~~~e~~~i~~s 144 (297)
T TIGR03212 75 SRAGFWRLLRLFTERGIPVTVFGVA------MALARNPE---AVAAMKEAG-WEIASHGLRWIDYQDMDEAQEREHIAEA 144 (297)
T ss_pred chhCHHHHHHHHHHcCCCEEEEeEH------HHHHHCHH---HHHHHHHcC-CEEeeccccCcccccCCHHHHHHHHHHH
Confidence 34445668888888753 3355443 34456664 677778899 8999999987776666888899999999
Q ss_pred HHHHHHHhCCCCceeeecCCCCCChhhHHHHhhh-cCCcEEEEeccc
Q 002542 153 HRFIKNEFGVTPRIGWQIDPFGHSAVQAYLLGSE-VGFDSFFYGRID 198 (910)
Q Consensus 153 ~~~l~~~fG~~p~~~w~~D~FGhs~~~p~ll~~~-~G~~~~~~~Ri~ 198 (910)
.+-|++..|.+| .||.. -.+|..++.|+ ++ .||.+..-+..+
T Consensus 145 ~~~i~~~tG~~P-~G~~~--~~~s~~T~~LL-~e~~Gf~Y~sd~~~d 187 (297)
T TIGR03212 145 IRLHTEVTGERP-LGWYT--GRTSPNTRRLV-AEEGGFLYDADSYAD 187 (297)
T ss_pred HHHHHHHhCCCC-ceEEC--CCCChhHHHHH-HHhcCceEeCchhhc
Confidence 998888888765 56753 36899999999 88 999987754433
No 17
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB. This model describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reducted sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterized polysaccharide deacetylase; the exact function this protein family is unknown.
Probab=93.09 E-value=0.96 Score=46.13 Aligned_cols=101 Identities=16% Similarity=0.250 Sum_probs=76.0
Q ss_pred HHHHHHHHhCCCC-eEEEechhHHHHHHHhcCHHHHHHHHHHHhCCcEEEEcceeeeecccCCChHHHHHHHHHHHHHHH
Q 002542 79 DSVIPELLADKNR-KFIYVEQAFFQRWWDEQSEAMQHEVKQLVGSGQLEFINGGMCMHDEAVTHYIDMIDQTTLGHRFIK 157 (910)
Q Consensus 79 ~~vi~~L~~~p~~-kF~~~e~~~~~~w~~~~~p~~~~~vk~lV~~GrlE~vgGgwv~~Dea~~~~esiIrql~~G~~~l~ 157 (910)
..+++.|+++.-+ .|-.... | .+..| +.+|+++++|- ||-+-+|.-++-...+.+.+.+++..+.+.|+
T Consensus 22 ~~~l~~L~~~~ikaTfFv~g~-----~-~~~~~---~~~~~i~~~Gh-eig~Ht~~H~~~~~~~~~~~~~ei~~~~~~l~ 91 (191)
T TIGR02764 22 EPILDTLKEYDVKATFFLSGS-----W-AERHP---ELVKEIVKDGH-EIGSHGYRHKNYTTLEDEKIKKDILRAQEIIE 91 (191)
T ss_pred HHHHHHHHHcCCCEEEEeccH-----H-HHHCH---HHHHHHHhCCC-EEEECCcCCCCcccCCHHHHHHHHHHHHHHHH
Confidence 4567778777532 3444331 2 23344 67899999995 79999998888777889999999999999999
Q ss_pred HHhCCCCceeeecCCCC-CChhhHHHHhhhcCCcEE
Q 002542 158 NEFGVTPRIGWQIDPFG-HSAVQAYLLGSEVGFDSF 192 (910)
Q Consensus 158 ~~fG~~p~~~w~~D~FG-hs~~~p~ll~~~~G~~~~ 192 (910)
+..|..|+ |--=|+| ++..+..++ ++.|++.+
T Consensus 92 ~~~g~~~~--~fr~P~G~~~~~~~~~l-~~~G~~~v 124 (191)
T TIGR02764 92 KLTGKKPT--LFRPPSGAFNKAVLKAA-ESLGYTVV 124 (191)
T ss_pred HHhCCCCC--EEECCCcCCCHHHHHHH-HHcCCeEE
Confidence 99998876 4455677 567778888 89999854
No 18
>TIGR02884 spore_pdaA delta-lactam-biosynthetic de-N-acetylase. Muramic delta-lactam is an unusual constituent of peptidoglycan, found only in bacterial spores in the peptidoglycan wall, or spore cortex. The proteins in this family are PdaA (yfjS), a member of a larger family of polysaccharide deacetylases, and are specificially involved in delta-lactam biosynthesis. PdaA acts immediately after CwlD, an N-acetylmuramoyl-L-alanine amidase and performs a de-N-acetylation. PdaA may also perform the following transpeptidation for lactam ring formation, as heterologous expression in E. coli of CwlD and PdaA together is sufficient for delta-lactam production.
Probab=92.91 E-value=0.82 Score=48.05 Aligned_cols=101 Identities=16% Similarity=0.176 Sum_probs=77.5
Q ss_pred HHHHHHHhCCC-CeEEEechhHHHHHHHhcCHHHHHHHHHHHhCCcEEEEcceeeeecccCCChHHHHHHHHHHHHHHHH
Q 002542 80 SVIPELLADKN-RKFIYVEQAFFQRWWDEQSEAMQHEVKQLVGSGQLEFINGGMCMHDEAVTHYIDMIDQTTLGHRFIKN 158 (910)
Q Consensus 80 ~vi~~L~~~p~-~kF~~~e~~~~~~w~~~~~p~~~~~vk~lV~~GrlE~vgGgwv~~Dea~~~~esiIrql~~G~~~l~~ 158 (910)
.+++.|+++-- ..|-..+. |. +..| +.+|+++++|- ||-+-+|.-++-...+.+.+.++|....+.|++
T Consensus 54 ~lL~~L~~~~vkATFFv~G~-----~~-~~~p---~~ir~i~~~Gh-eIgnHt~~H~~~~~ls~~~~~~ei~~~~~~i~~ 123 (224)
T TIGR02884 54 KILDVLKEKKVPAAFFVTGH-----YI-KTQP---DLIKRMVDEGH-IVGNHSVHHPSLTAVNDEKFKEELTGVEEEFKK 123 (224)
T ss_pred HHHHHHHHcCCCeEEEeech-----hh-HHCH---HHHHHHHHcCC-EeeecCccCcCcccCCHHHHHHHHHHHHHHHHH
Confidence 47778877743 33544442 22 3344 68899999995 688999987777778899999999999999999
Q ss_pred HhCCC-CceeeecCCCC-CChhhHHHHhhhcCCcEEE
Q 002542 159 EFGVT-PRIGWQIDPFG-HSAVQAYLLGSEVGFDSFF 193 (910)
Q Consensus 159 ~fG~~-p~~~w~~D~FG-hs~~~p~ll~~~~G~~~~~ 193 (910)
..|.. |+ |--=|+| ++..+.+++ +++|+..++
T Consensus 124 ~~G~~~~~--~fR~P~G~~~~~~~~~l-~~~Gy~~v~ 157 (224)
T TIGR02884 124 VTGQKEMK--YFRPPRGVFSERTLAYT-KELGYYTVF 157 (224)
T ss_pred HhCCCCCC--EEeCCCCCcCHHHHHHH-HHcCCcEEe
Confidence 99976 44 6667899 577899999 899998643
No 19
>TIGR03006 pepcterm_polyde polysaccharide deactylase family protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide deacetylases (pfam01522). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene. The highest scoring homologs below the trusted cutoff for this model are found in several species of Methanosarcina, an archaeal genus.
Probab=91.03 E-value=2.3 Score=45.90 Aligned_cols=112 Identities=16% Similarity=0.199 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHHHHhCCC-CeEEEechhHHHHHHHhcCHHHHHHHHHHHhCCcEEEEcceeeeecccCCChHHHHHHHH
Q 002542 72 ACVQNVLDSVIPELLADKN-RKFIYVEQAFFQRWWDEQSEAMQHEVKQLVGSGQLEFINGGMCMHDEAVTHYIDMIDQTT 150 (910)
Q Consensus 72 ~~v~~il~~vi~~L~~~p~-~kF~~~e~~~~~~w~~~~~p~~~~~vk~lV~~GrlE~vgGgwv~~Dea~~~~esiIrql~ 150 (910)
.+|...+..+++.|+++-- .+|-... |+.+..| +.+|+++++| .||.+=||.-.+-..-+.+.+..++.
T Consensus 24 ~rv~~nt~riL~lL~~~gikATFFv~g------~~~e~~p---~lir~i~~~G-hEIgsHg~sH~~l~~ls~ee~~~eI~ 93 (265)
T TIGR03006 24 CRVERNTDRILDLLDRHGVKATFFTLG------WVAERYP---ELVRRIVAAG-HELASHGYGHERVTTQTPEAFRADIR 93 (265)
T ss_pred chHHHhHHHHHHHHHHcCCcEEEEEec------cchhhCH---HHHHHHHHcC-CEeeeccccCcCchhCCHHHHHHHHH
Confidence 3677778889999998754 3454443 3344555 5699999999 69999999877666678899999999
Q ss_pred HHHHHHHHHhCCCCceeeecCCCCCC---hhhHHHHhhhcCCcEEEEe
Q 002542 151 LGHRFIKNEFGVTPRIGWQIDPFGHS---AVQAYLLGSEVGFDSFFYG 195 (910)
Q Consensus 151 ~G~~~l~~~fG~~p~~~w~~D~FGhs---~~~p~ll~~~~G~~~~~~~ 195 (910)
...+.|++..|..|+ ||-.=.+..+ .....++ +++||.+..-.
T Consensus 94 ~s~~~Le~itG~~~~-gfRaP~~s~~~~t~~a~~iL-~e~Gy~YdsS~ 139 (265)
T TIGR03006 94 RSKALLEDLSGQPVR-GYRAPSFSIGKKNLWALDVL-AEAGYRYSSSI 139 (265)
T ss_pred HHHHHHHHHhCCCce-EEECCCCCCCCCcHHHHHHH-HHCCCEEEEee
Confidence 999999888888776 5543333333 3346899 89999986533
No 20
>TIGR02873 spore_ylxY probable sporulation protein, polysaccharide deacetylase family. Members of this protein family are most closely related to TIGR02764, a subset of polysaccharide deacetylase family proteins found in a species if and only if the species forms endospores like those of Bacillus subtilis or Clostridium tetani. This family is likewise restricted to spore-formers, but is not universal among them in having sequences with full-length matches to the model.
Probab=89.94 E-value=3.2 Score=44.80 Aligned_cols=101 Identities=21% Similarity=0.356 Sum_probs=78.2
Q ss_pred HHHHHHHHHhCCC-CeEEEechhHHHHHHHhcCHHHHHHHHHHHhCCcEEEEcceeeeecccCCChHHHHHHHHHHHHHH
Q 002542 78 LDSVIPELLADKN-RKFIYVEQAFFQRWWDEQSEAMQHEVKQLVGSGQLEFINGGMCMHDEAVTHYIDMIDQTTLGHRFI 156 (910)
Q Consensus 78 l~~vi~~L~~~p~-~kF~~~e~~~~~~w~~~~~p~~~~~vk~lV~~GrlE~vgGgwv~~Dea~~~~esiIrql~~G~~~l 156 (910)
...+++.|+++-- .+|-..+ +|. +.+| +.+|+++++|- ||-+=+|.-++...-+.+.+.++|..+.+.+
T Consensus 100 t~~iL~iLkk~~vkATFFv~G-----~~i-~~~p---~l~k~i~~~Gh-eIGnHT~sH~~l~~ls~~~~~~Ei~~~~~~i 169 (268)
T TIGR02873 100 LPEILQILKKHDVKATFFLEG-----KWV-KENS---QLAKMIVEQGH-EIGNHAYNHPDMATLSKEEIYDQINQTNEII 169 (268)
T ss_pred HHHHHHHHHHCCCCEEEEeeh-----Hhh-hHCH---HHHHHHHHCCC-EEEecCCcCCCcccCCHHHHHHHHHHHHHHH
Confidence 3467788887753 3455554 232 3455 46788899995 7999999888888888999999999999999
Q ss_pred HHHhCCCCceeeecCCCCC-ChhhHHHHhhhcCCcE
Q 002542 157 KNEFGVTPRIGWQIDPFGH-SAVQAYLLGSEVGFDS 191 (910)
Q Consensus 157 ~~~fG~~p~~~w~~D~FGh-s~~~p~ll~~~~G~~~ 191 (910)
++..|..|+ |--=|+|. +..+.+++ +++|+..
T Consensus 170 ~~~~G~~p~--~fRpP~G~~n~~~~~~l-~~~G~~~ 202 (268)
T TIGR02873 170 EATIGVTPK--WFAPPSGSFNDNVVQIA-ADLQMGT 202 (268)
T ss_pred HHHhCCCCC--EEECCCCCCCHHHHHHH-HHCCCeE
Confidence 999999887 66668986 57788888 8999865
No 21
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=85.63 E-value=22 Score=43.37 Aligned_cols=80 Identities=19% Similarity=0.310 Sum_probs=61.6
Q ss_pred HHHHHHHhCCcEEEEcceeeeeccc--------------------CCCh-------HHHHHHHHHHHHHHHHHhCCCCce
Q 002542 114 HEVKQLVGSGQLEFINGGMCMHDEA--------------------VTHY-------IDMIDQTTLGHRFIKNEFGVTPRI 166 (910)
Q Consensus 114 ~~vk~lV~~GrlE~vgGgwv~~Dea--------------------~~~~-------esiIrql~~G~~~l~~~fG~~p~~ 166 (910)
+.||+++++|-+||-+=+|..|.-. ...| +.+.+.+....+.|++..|..|++
T Consensus 168 eqIreM~~sGlvEIGSHT~~sH~~l~anp~g~~~pa~~~r~~~~~~~~yEs~~e~~~ri~~DL~~s~~~Ie~~tG~~p~~ 247 (671)
T PRK14582 168 QQVREVARSRLVEIASHTWNSHYGIQANPQGSLLPAAVNRAYFTDHARYETAAEYRERIRLDAVKMTEYIRTKAGKNPRV 247 (671)
T ss_pred HHHHHHHhCCCeEEEcCCchhccccccccccccccchhcccccccccccccHHHHHHHHHHHHHHHHHHHHHHhCCCCcE
Confidence 6899999999999988888655311 1122 226678999999999999998885
Q ss_pred eeecCCCCC-ChhhHHHHhhhcCCcEEEEec
Q 002542 167 GWQIDPFGH-SAVQAYLLGSEVGFDSFFYGR 196 (910)
Q Consensus 167 ~w~~D~FGh-s~~~p~ll~~~~G~~~~~~~R 196 (910)
..=|||+ +.....++ +++|++..+..+
T Consensus 248 --FayPyG~~n~~~~~ia-keaGY~~afT~~ 275 (671)
T PRK14582 248 --WVWPYGEANGIALEEL-KKLGYDMAFTLE 275 (671)
T ss_pred --EecCCCCCCHHHHHHH-HHCCCeEEEEeC
Confidence 5668985 66778999 899999888654
No 22
>PRK14581 hmsF outer membrane N-deacetylase; Provisional
Probab=82.57 E-value=5.7 Score=48.22 Aligned_cols=81 Identities=19% Similarity=0.254 Sum_probs=62.8
Q ss_pred HHHHHHHHhCCcEEEEcceeeeecc--------------------cCCChH-------HHHHHHHHHHHHHHHHhCCCCc
Q 002542 113 QHEVKQLVGSGQLEFINGGMCMHDE--------------------AVTHYI-------DMIDQTTLGHRFIKNEFGVTPR 165 (910)
Q Consensus 113 ~~~vk~lV~~GrlE~vgGgwv~~De--------------------a~~~~e-------siIrql~~G~~~l~~~fG~~p~ 165 (910)
.+.||+++++|-+||-+=+|..+.- ....+| .+-+.+....+.|++..|..|+
T Consensus 167 W~qIrEM~~sGLvEIGSHT~sHh~~~~~np~g~~~pa~~~~~y~~~~~~yEs~~~~~~rl~~Di~~s~~~Ie~~lG~~p~ 246 (672)
T PRK14581 167 WKQITEMSKSGLVEIGAHTYASHYGVIANPQGNTEPAAANLQYDPKTKQYETVEAFKQRMEKDVALITQRIVQATGKQPR 246 (672)
T ss_pred HHHHHHHHHCCCcEEEcCCcccccccccCccccccchhhhccccccccccccHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 3689999999999999888876631 112233 2556688888989999999888
Q ss_pred eeeecCCCCC-ChhhHHHHhhhcCCcEEEEec
Q 002542 166 IGWQIDPFGH-SAVQAYLLGSEVGFDSFFYGR 196 (910)
Q Consensus 166 ~~w~~D~FGh-s~~~p~ll~~~~G~~~~~~~R 196 (910)
. ..=|||+ +...-.++ +++||+..+..+
T Consensus 247 ~--FayPyG~yn~~~~~ia-k~aGy~~afTt~ 275 (672)
T PRK14581 247 V--WVWPYGAPNGTVLNIL-RQHGYQLAMTLD 275 (672)
T ss_pred E--EEcCCCCcCHHHHHHH-HHCCCcEEEECC
Confidence 4 5568995 78889999 899999988665
No 23
>PRK15394 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD; Provisional
Probab=71.88 E-value=1.6e+02 Score=32.31 Aligned_cols=80 Identities=13% Similarity=-0.020 Sum_probs=60.7
Q ss_pred HHHHHHHhCCcEEEEcceeeee----cccCCChHHHHHHHHHHHHHHHHHhCCCCceeeecCCCCCChhhHHHHhhhcCC
Q 002542 114 HEVKQLVGSGQLEFINGGMCMH----DEAVTHYIDMIDQTTLGHRFIKNEFGVTPRIGWQIDPFGHSAVQAYLLGSEVGF 189 (910)
Q Consensus 114 ~~vk~lV~~GrlE~vgGgwv~~----Dea~~~~esiIrql~~G~~~l~~~fG~~p~~~w~~D~FGhs~~~p~ll~~~~G~ 189 (910)
+.+|+.+++ -|+.+=||.-. ....-+.+.+.++|..+.+-|++..|.+|+ +|-+=-+-.+..+..++ +++||
T Consensus 92 ~lvr~i~~~--HEIG~Hg~~H~~wq~~~~~ls~~e~~~eI~ra~~~Le~itG~~p~-g~raPgw~~~~~tl~ll-~e~Gf 167 (296)
T PRK15394 92 DIIREAAKA--HEVGLHAWDHHAWQAWSGVWSRQQLIEQIARGVDALEEIIGQPVT-CSAAAGWRADQRVVEAK-EAFGF 167 (296)
T ss_pred HHHHHHHhc--CEehhcccCccchhcccccCCHHHHHHHHHHHHHHHHHHhCCCCC-EEeCCCccCCHHHHHHH-HHcCC
Confidence 467777777 99988899644 234557788999999999988888888764 45555555678889999 89999
Q ss_pred cEEEEecc
Q 002542 190 DSFFYGRI 197 (910)
Q Consensus 190 ~~~~~~Ri 197 (910)
.|---.|.
T Consensus 168 ~Y~Ss~~~ 175 (296)
T PRK15394 168 RYNSDCRG 175 (296)
T ss_pred eeecCCCC
Confidence 98754443
No 24
>PF07481 DUF1521: Domain of Unknown Function (DUF1521); InterPro: IPR011086 This domain of unknown function is found in a limited set of Bradyrhizobium proteins. There appears to be a periodic -DG- motif in the domain.
Probab=71.41 E-value=47 Score=32.38 Aligned_cols=96 Identities=9% Similarity=0.042 Sum_probs=55.2
Q ss_pred CCceEEe-cceEEEEEECCCCCcEEEEecCCcceEEeeeeEEEeecCCCCCCCCCCCCcceeEecCCCeeeecCCcceEE
Q 002542 599 KSTVEVG-QGNLKLIFSSDKSKPINYINNKSLVEESVEQSYSFYPAYNGTNDKAPQNAGAYIFRPNGTFFIKSEGQVPLT 677 (910)
Q Consensus 599 ~~~~~ie-N~~~~v~~~~~~G~l~si~dk~~g~~~~~~~~f~~Y~~~~g~~~~~~~~sGAYiF~P~~~~~~~~~~~~~i~ 677 (910)
.+.-+|+ ++.|+|.++..++.+. |++|++|....+-.+-.+... +..--+|+|.- ...+.+.....|.
T Consensus 7 dgkati~lgd~Y~I~~~e~ds~~~-itnk~tG~~TriwGDPHvd~~--------Gdg~~~fDFk~--~~tf~L~DGTKIt 75 (171)
T PF07481_consen 7 DGKATIDLGDGYTIEANEKDSEWT-ITNKQTGETTRIWGDPHVDAD--------GDGKTDFDFKG--DMTFQLDDGTKIT 75 (171)
T ss_pred CCeeEEecCCceEEEecCCcceEE-EecCCCCcEeEEeCCCccccC--------CCcccceeecC--ceEEEeCCCCEEE
Confidence 3445677 8889999996678888 999999988775443333211 11122678863 3345555545555
Q ss_pred EEEcccEEEEEEEEcceEEEEEEEecCCCeEEEE
Q 002542 678 VMRGPILDEVHQKINEWIYQVTRLYKGKEHVEVE 711 (910)
Q Consensus 678 v~~Gpl~~~v~~~~~~~~~~~vrLy~~~~~ie~e 711 (910)
|..=|.-. +..++..+.+..+...+.++
T Consensus 76 V~T~p~gn------g~T~askLtIt~Gd~~~~V~ 103 (171)
T PF07481_consen 76 VDTVPWGN------GMTYASKLTITNGDNAWQVE 103 (171)
T ss_pred EeeeecCC------CcEEeeeEEEEcCCceEEEe
Confidence 54322211 12233445556666666554
No 25
>PF08672 APC2: Anaphase promoting complex (APC) subunit 2; InterPro: IPR014786 The anaphase-promoting complex (APC) or cyclosome is a multi-subunit E3 protein ubiquitin ligase that regulates important events in mitosis such as the initiation of anaphase and exit from telophase. The APC, in conjunction with other enzymes, assembles multi-ubiquitin chains on a variety of regulatory proteins, thereby targeting them for proteolysis by the 26S proteasome. Anaphase is initiated when the APC triggers the destruction of securin, thereby allowing the protease, separase, to disrupt sister-chromatid cohesion. Securin ubiquitination by the APC is inhibited by cyclin-dependent kinase 1 (Cdk1)-dependent phosphorylation []. Forkhead Box M1 (FoxM1), which is a transcription factor that is over-expressed in many cancers, is degraded in late mitosis and early G1 phase by the APC/cyclosome (APC/C) E3 ubiquitin ligase []. The APC/C targets mitotic cyclins for destruction in mitosis and G1 phase and is then inactivated at S phase. It thereby generates alternating states of high and low cyclin-Cdk activity, which is required for the alternation of mitosis and DNA replication []. The APC/C is composed of at least 13 subunits that stay tightly associated throughout the cell cycle: APC1, APC2, APC4, APC5, APC9, APC11, CDC16, CDC23, CDC26, CDC27, DOC1, MND2 and SWM1[], []. In fission yeast the 13 subunits are known as: Apc1, Apc2, Nuc2, Apc4, Apc5, Cut9, Apc8, Apc10, Apc11, Hcn1, Apc13, Apc14 and Apc15 []. This entry represents a C-terminal domain found in APC subunit 2. ; PDB: 1LDD_A.
Probab=67.09 E-value=6.6 Score=31.93 Aligned_cols=23 Identities=35% Similarity=0.530 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHhCCcEEEEccee
Q 002542 110 EAMQHEVKQLVGSGQLEFINGGM 132 (910)
Q Consensus 110 p~~~~~vk~lV~~GrlE~vgGgw 132 (910)
++.++-+.++|++|+||++||-|
T Consensus 36 ~eL~~fL~~lv~e~~L~~~~G~Y 58 (60)
T PF08672_consen 36 EELQEFLDRLVEEGKLECSGGSY 58 (60)
T ss_dssp HHHHHHHHHHHHTTSEE--TTEE
T ss_pred HHHHHHHHHHHHCCcEEecCCEE
Confidence 45677788999999999998877
No 26
>TIGR03826 YvyF flagellar operon protein TIGR03826. This gene is found in flagellar operons of Bacillus-related organisms. Its function has not been determined and an official gene symbol has not been assigned, although the gene is designated yvyF in B. subtilus. A tentative assignment as a regulator is suggested in the NCBI record GI:16080597.
Probab=37.61 E-value=25 Score=33.69 Aligned_cols=51 Identities=16% Similarity=0.189 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHhCCCCeEEEechhHHHHHHHhcCHHHHHHHHHHHhCCcEEEEcc
Q 002542 73 CVQNVLDSVIPELLADKNRKFIYVEQAFFQRWWDEQSEAMQHEVKQLVGSGQLEFING 130 (910)
Q Consensus 73 ~v~~il~~vi~~L~~~p~~kF~~~e~~~~~~w~~~~~p~~~~~vk~lV~~GrlE~vgG 130 (910)
....-+..|-+.|.++|.+.-+..|++ +...-..+.|.++|++|||++...
T Consensus 27 ~~e~~f~kV~~yLr~~p~~~ati~eV~-------e~tgVs~~~I~~~IreGRL~~~~~ 77 (137)
T TIGR03826 27 EEEREFEKVYKFLRKHENRQATVSEIV-------EETGVSEKLILKFIREGRLQLKHF 77 (137)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCHHHHH-------HHHCcCHHHHHHHHHcCCeeccCC
Confidence 456678888899999999766655543 233334578999999999998753
No 27
>TIGR03593 yidC_nterm membrane protein insertase, YidC/Oxa1 family, N-terminal domain. Essentially all bacteria have a member of the YidC family, whose C-terminal domain is modeled by TIGR03592. The two copies are found in endospore-forming bacteria such as Bacillus subtilis appear redundant during vegetative growth, although the member designated spoIIIJ (stage III sporulation protein J) has a distinct role in spore formation. YidC, its mitochondrial homolog Oxa1, and its chloroplast homolog direct insertion into the bacterial/organellar inner (or only) membrane. This model describes an N-terminal sequence region, including a large periplasmic domain lacking in YidC members from Gram-positive species. The multifunctional YidC protein acts both with and independently of the Sec system.
Probab=35.59 E-value=2.9e+02 Score=31.21 Aligned_cols=29 Identities=14% Similarity=0.051 Sum_probs=23.8
Q ss_pred CCceEEecceEEEEEECCCCCcEEEEecC
Q 002542 599 KSTVEVGQGNLKLIFSSDKSKPINYINNK 627 (910)
Q Consensus 599 ~~~~~ieN~~~~v~~~~~~G~l~si~dk~ 627 (910)
...++|+|+.++++|+...|.|.++.-|+
T Consensus 73 ~~~i~v~td~~~~~is~~Gg~i~~~~Lk~ 101 (366)
T TIGR03593 73 AKRITVKTDVLRASISTKGGDIDSLELKK 101 (366)
T ss_pred CCeEEEECCeEEEEEeCCCceeeeecccc
Confidence 34689999999999997777898887653
No 28
>PF14849 YidC_periplas: YidC periplasmic domain; PDB: 3BS6_B 3BLC_B.
Probab=35.51 E-value=2.4e+02 Score=30.08 Aligned_cols=25 Identities=24% Similarity=0.191 Sum_probs=20.0
Q ss_pred eEEecceEEEEEECCCCCcEEEEec
Q 002542 602 VEVGQGNLKLIFSSDKSKPINYINN 626 (910)
Q Consensus 602 ~~ieN~~~~v~~~~~~G~l~si~dk 626 (910)
++|||+.++++|+...|.|.++.-|
T Consensus 2 v~ven~~~~~~~s~~GG~i~~~~Lk 26 (270)
T PF14849_consen 2 VTVENDLFKVTFSSKGGRIKSVELK 26 (270)
T ss_dssp EEEE-SS-EEEEETBTTEEEEEEEE
T ss_pred EEEECCCEEEEEECCCCeEEEEEcC
Confidence 6899999999999788999988755
No 29
>PF12395 DUF3658: Protein of unknown function ; InterPro: IPR022123 This domain family is found in bacteria, and is approximately 110 amino acids in length. The family is found in association with PF08874 from PFAM. There are two completely conserved residues (D and R) that may be functionally important.
Probab=33.84 E-value=72 Score=29.43 Aligned_cols=69 Identities=16% Similarity=0.232 Sum_probs=45.5
Q ss_pred EEEEEeccCCCCccchhhhheeecCCCcchhHHHHHHHHHHHHHHHhCCCCeEEEechhHHHHHHHhcCHHHHHHHHHHH
Q 002542 41 NVHLVAHTHDDVGWLKTVDQYYVGSNNSIQGACVQNVLDSVIPELLADKNRKFIYVEQAFFQRWWDEQSEAMQHEVKQLV 120 (910)
Q Consensus 41 ~VhlVpHSH~D~gWl~t~~~y~~~~~~~~~~~~v~~il~~vi~~L~~~p~~kF~~~e~~~~~~w~~~~~p~~~~~vk~lV 120 (910)
+|.=+|=.|.|.--+...+.-| ..+.+++-.|+..+.... .+|| ..-|+++||
T Consensus 40 ~i~sv~ed~yD~~Il~~~~~~~---------~~~arvIg~vl~~~~~~i------------~D~f------~~~Ri~~Li 92 (111)
T PF12395_consen 40 KIVSVPEDYYDDFILEQAPDEF---------QKAARVIGEVLGHSDQGI------------GDWF------LEYRIRELI 92 (111)
T ss_pred eEEecChHHhhHHHHhcCCccc---------cHHHHHHHHHHHhcCcCC------------ChHH------HHHHHHHHH
Confidence 4555667788877777554444 367777777777752221 2333 235899999
Q ss_pred hCCcEEEEcceeeeec
Q 002542 121 GSGQLEFINGGMCMHD 136 (910)
Q Consensus 121 ~~GrlE~vgGgwv~~D 136 (910)
++|+||+.|-.-.|.+
T Consensus 93 ~~G~le~~g~~~~mr~ 108 (111)
T PF12395_consen 93 SQGVLEIKGDPKDMRH 108 (111)
T ss_pred HCCCEEEecCCCcccc
Confidence 9999999976655543
No 30
>PHA03393 odv-e66 occlusion-derived virus envelope protein E66; Provisional
Probab=33.67 E-value=61 Score=39.28 Aligned_cols=109 Identities=18% Similarity=0.265 Sum_probs=71.3
Q ss_pred ccchhhhheeecCCCcchhHHHHHHHH-HHHHHHH--hCCCCeEEEechhH--HHHHHHhcCHHHHHHHHHHHhCCcEEE
Q 002542 53 GWLKTVDQYYVGSNNSIQGACVQNVLD-SVIPELL--ADKNRKFIYVEQAF--FQRWWDEQSEAMQHEVKQLVGSGQLEF 127 (910)
Q Consensus 53 gWl~t~~~y~~~~~~~~~~~~v~~il~-~vi~~L~--~~p~~kF~~~e~~~--~~~w~~~~~p~~~~~vk~lV~~GrlE~ 127 (910)
.=|..||+||. .+|. .-.+.-+ .+|.|.|..++..| +.-| +...+---..+.|+.-|=-
T Consensus 54 ~~L~~FE~yy~------------~TL~~~f~qkaeki~nptr~f~~d~~iF~~L~Pw--~sa~dFgt~~hTLigY~vr-- 117 (682)
T PHA03393 54 DDLDTFERYYK------------NTLTQKFLQKAEKIANPTRQFSDDDNIFDGLSPW--TSANDFGTLCHTLIGYCVR-- 117 (682)
T ss_pred hHHHHHHHHHH------------HHHHHHHHhhhhhhcCCcccccCCCceecCCccc--cCHHHHHHHHHHHHhheEE--
Confidence 45889999985 2222 2233333 48898899777666 3444 2233444455666544322
Q ss_pred EcceeeeecccCCChHHHHHHHHHHHHHHHHHhCCCCceeeecCCCC-------CChhhHHHH
Q 002542 128 INGGMCMHDEAVTHYIDMIDQTTLGHRFIKNEFGVTPRIGWQIDPFG-------HSAVQAYLL 183 (910)
Q Consensus 128 vgGgwv~~Dea~~~~esiIrql~~G~~~l~~~fG~~p~~~w~~D~FG-------hs~~~p~ll 183 (910)
|..++.++-.-..+..++..|.+++.+++...+. ++-.|+| .|=+||..|
T Consensus 118 ----y~~~~d~lY~d~~LA~nL~~aL~~I~~~LP~p~p--~~qaPWG~~~dWy~FsItmPE~~ 174 (682)
T PHA03393 118 ----YNNPNDALYQDPELAYNLINALRLIYSHLPDPAP--HQQAPWGPVADWYHFSITMPECF 174 (682)
T ss_pred ----ecCCCccccCCHHHHHHHHHHHHHHHhcCCCCCc--ccCCCCCCcCceeeEEccHHHHH
Confidence 4556666677778999999999999999998763 2455666 677888776
No 31
>PRK10148 hypothetical protein; Provisional
Probab=30.55 E-value=19 Score=35.02 Aligned_cols=18 Identities=22% Similarity=0.200 Sum_probs=15.0
Q ss_pred CceeeecCCCCCChhhHH
Q 002542 164 PRIGWQIDPFGHSAVQAY 181 (910)
Q Consensus 164 p~~~w~~D~FGhs~~~p~ 181 (910)
++.||..|+||++|++-.
T Consensus 123 ~~~g~v~D~fGi~W~l~~ 140 (147)
T PRK10148 123 HGFGKVTDKFGVPWMINV 140 (147)
T ss_pred hccEEEECCCCCEEEEEe
Confidence 477999999999998643
No 32
>PF02929 Bgal_small_N: Beta galactosidase small chain; InterPro: IPR004199 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Beta-galactosidase enzymes (3.2.1.23 from EC) belong to several glycoside hydrolase families: GH1 from CAZY, GH2 from CAZY, GH35 from CAZY and GH42 from CAZY. Beta-galactosidase is the product of the lac operon Z gene of Escherichia coli. This enzyme catalyses the hydrolysis of the disaccharide lactose to galactose and glucose, and can also convert lactose to allolactose, the inducer of the lac operon. This domain is found in single chain beta-galactosidases, which are comprised of five domains. The active site is located in a deep pocket built around the central alpha-beta barrel, with the other domains conferring specificity for a disaccharide substrate. This entry represents domain 5 of glycoside hydrolase family 2, which contains an N-terminal loop that swings towards the active site upon the deep binding of a ligand to produce a closed conformation []. This domain is also found in the amino-terminal portion of the small chain of dimeric beta-galactosidases.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1JZ3_D 1JYY_H 1GHO_P 3VD9_B 3I3E_B 3T0B_A 3T09_C 1F4A_D 3VDC_C 3VDB_D ....
Probab=27.31 E-value=7.9e+02 Score=26.51 Aligned_cols=40 Identities=15% Similarity=0.159 Sum_probs=26.1
Q ss_pred EecceEEEEEECCCCCcEEEEecCCcceEEe-eeeEEEeecCC
Q 002542 604 VGQGNLKLIFSSDKSKPINYINNKSLVEESV-EQSYSFYPAYN 645 (910)
Q Consensus 604 ieN~~~~v~~~~~~G~l~si~dk~~g~~~~~-~~~f~~Y~~~~ 645 (910)
|.++..++.||+.+|.|+|+.- .|+++.. ...+.++.+..
T Consensus 2 V~g~~f~~~Fdk~~G~l~s~~~--~g~~ll~~~~~~nfwRApT 42 (276)
T PF02929_consen 2 VSGKDFSYVFDKKTGTLTSYKY--NGKELLKRGPKPNFWRAPT 42 (276)
T ss_dssp EEETTEEEEEETTTTCEEEEEE--TTEEEECEEEEEE---S--
T ss_pred CccCCEEEEEECCCCeEEEEEE--CCEEeecCCCcccEEeCCC
Confidence 5677789999999999999874 5666653 33455665543
No 33
>PF13289 SIR2_2: SIR2-like domain
Probab=26.85 E-value=3.2e+02 Score=25.57 Aligned_cols=83 Identities=18% Similarity=0.280 Sum_probs=53.3
Q ss_pred EEEechhHHHHHHHhcCHHHHHHHHHHHhCCcEEEEcceeeeecccCCChHHHHHHHHHHHHHHHHHhCCCCceeeecCC
Q 002542 93 FIYVEQAFFQRWWDEQSEAMQHEVKQLVGSGQLEFINGGMCMHDEAVTHYIDMIDQTTLGHRFIKNEFGVTPRIGWQIDP 172 (910)
Q Consensus 93 F~~~e~~~~~~w~~~~~p~~~~~vk~lV~~GrlE~vgGgwv~~Dea~~~~esiIrql~~G~~~l~~~fG~~p~~~w~~D~ 172 (910)
++..+..|. +.+ ...+...+.++.+.++.-+-|+ ||.+.|.. |++++ +.+.+..+...+-.|.+.+
T Consensus 59 ~vlt~~~y~-~~~-~~~~~~~~~l~~~l~~~~~lfi--Gys~~D~~-------i~~~l---~~~~~~~~~~~~~~~~v~~ 124 (143)
T PF13289_consen 59 IVLTEDDYE-EYY-SSNPWFPNFLRSLLRSKTLLFI--GYSFNDPD-------IRQLL---RSALENSGKSRPRHYIVIP 124 (143)
T ss_pred EEEcHHHHH-HHh-hhHHHHHHHHHHHHcCCCEEEE--EECCCCHH-------HHHHH---HHHHHhccCCCccEEEEEc
Confidence 455554442 333 3467788889999988888777 66677753 34433 2355666664444566666
Q ss_pred CCCChhhHHHHhhhcCCc
Q 002542 173 FGHSAVQAYLLGSEVGFD 190 (910)
Q Consensus 173 FGhs~~~p~ll~~~~G~~ 190 (910)
-.-......++ ...||+
T Consensus 125 ~~~~~~~~~~~-~~~~i~ 141 (143)
T PF13289_consen 125 DPDDENEREFL-EKYGIE 141 (143)
T ss_pred CCchHHHHHHH-HHcCCE
Confidence 66567777788 788876
No 34
>PF06044 DRP: Dam-replacing family; InterPro: IPR010324 Dam-replacing protein (DRP) is a restriction endonuclease that is flanked by pseudo-transposable small repeat elements. The replacement of Dam-methylase by DRP allows phase variation through slippage-like mechanisms in several pathogenic isolates of Neisseria meningitidis [].; PDB: 4ESJ_A.
Probab=26.67 E-value=1.1e+02 Score=32.14 Aligned_cols=100 Identities=15% Similarity=0.146 Sum_probs=58.4
Q ss_pred eeEecCCC---CCCCCceEEEEEeccCC------CCccchhhhheeecCCCcchhHHHHHHHHHHHHHHHhCCCCeEEEe
Q 002542 26 YRVYNTSQ---GIVPGKLNVHLVAHTHD------DVGWLKTVDQYYVGSNNSIQGACVQNVLDSVIPELLADKNRKFIYV 96 (910)
Q Consensus 26 ~~~~~~~~---~~~~~~~~VhlVpHSH~------D~gWl~t~~~y~~~~~~~~~~~~v~~il~~vi~~L~~~p~~kF~~~ 96 (910)
+.+|-.|+ ...++..+|++|-..-. =--|-+|.-=-- +....+--+-.|+.-+++=|...|+..
T Consensus 135 RaGwigCnI~l~~iPesGkI~lv~~~~~~~~~~V~~~~~~tlfLr~-------~~~~~rGWlldi~~cid~i~~~~FtL~ 207 (254)
T PF06044_consen 135 RAGWIGCNIDLSKIPESGKIFLVKNGQIIPPEEVLEQWQKTLFLRT-------QNIESRGWLLDIMKCIDKIPKNEFTLD 207 (254)
T ss_dssp ---EEEEEEEGGGS-GGG-EEEEETTEE--HHHHHHHHHHGGGGGG-------S-HHHHHHHHHHHHHHHHS-SSEEEHH
T ss_pred cCCcceeeeecccCCCcceEEEEeCCeEcCHHHHHHHHHHHHHHHh-------ccccccchHHHHHHHHHhcCccceeHH
Confidence 34444444 33567788888765432 112333321100 012334455567777778888899999
Q ss_pred chhHHHHHHHhcCHH-------HHHHHHHHHhCCcEEEEccee
Q 002542 97 EQAFFQRWWDEQSEA-------MQHEVKQLVGSGQLEFINGGM 132 (910)
Q Consensus 97 e~~~~~~w~~~~~p~-------~~~~vk~lV~~GrlE~vgGgw 132 (910)
++.-|+.-.....|. .|++++.|=..|-|||+|-|-
T Consensus 208 diY~Fe~~L~~~~P~N~~Ik~KIRQqLQ~LRD~g~IeFl~rG~ 250 (254)
T PF06044_consen 208 DIYAFEDELQIKYPNNNHIKAKIRQQLQILRDKGIIEFLGRGR 250 (254)
T ss_dssp HHHTTHHHHHHHSTT-S-HHHHHHHHHHHHHHTTSEEE-STTE
T ss_pred HHHHHHHHHHHhCCCCCChhHHHHHHHHHHhhCCceEEecCCc
Confidence 998888888877763 466666777899999998763
No 35
>COG0726 CDA1 Predicted xylanase/chitin deacetylase [Carbohydrate transport and metabolism]
Probab=26.59 E-value=5.5e+02 Score=26.66 Aligned_cols=115 Identities=18% Similarity=0.205 Sum_probs=79.9
Q ss_pred CccchhhhheeecCCCcchhHHHHHHHHHHHHHHHhCCC-CeEEEechhHHHHHHHhcCHHHHHHHHHHHhCCcEEEEcc
Q 002542 52 VGWLKTVDQYYVGSNNSIQGACVQNVLDSVIPELLADKN-RKFIYVEQAFFQRWWDEQSEAMQHEVKQLVGSGQLEFING 130 (910)
Q Consensus 52 ~gWl~t~~~y~~~~~~~~~~~~v~~il~~vi~~L~~~p~-~kF~~~e~~~~~~w~~~~~p~~~~~vk~lV~~GrlE~vgG 130 (910)
.--..|||+.+. .. ....+++.|+++-- ..|-... .|-+..|+..+++.+ +|-- +-+=
T Consensus 65 k~v~lTFDDg~~--------~~---~~~~il~iL~k~~i~ATfFv~g------~~i~~~p~~~~~~~~---~Ghe-ig~H 123 (267)
T COG0726 65 KAVALTFDDGPL--------DG---NTPRILPLLKKYGIKATFFVVG------SWIERNPDLVKRIAE---AGHE-IGNH 123 (267)
T ss_pred CeEEEEeecCCC--------CC---CcHHHHHHHHHcCCceEEEEeh------HhhHHCHHHHHHHHh---ccCe-ehhC
Confidence 334568888775 21 56677888887753 3555554 445666655544444 6665 7778
Q ss_pred eeeeecccCCChHHHHHHHHHHHHHHHHHhCCCCceeeecCCCCC-ChhhHHHHhhhcCCc
Q 002542 131 GMCMHDEAVTHYIDMIDQTTLGHRFIKNEFGVTPRIGWQIDPFGH-SAVQAYLLGSEVGFD 190 (910)
Q Consensus 131 gwv~~Dea~~~~esiIrql~~G~~~l~~~fG~~p~~~w~~D~FGh-s~~~p~ll~~~~G~~ 190 (910)
+|.-.+..-.+.+.+..++...+..+.+..|..|+ |.--|.|. +...-.+. +..|+.
T Consensus 124 ~~~h~~~~~~~~~~~~~~i~~~~~~l~~~~g~~~~--~~r~p~g~~~~~~~~~~-~~~g~~ 181 (267)
T COG0726 124 GYDHPDLQDLSLEELGAEIARAHDILKKITGGRPR--GFRPPYGSYNESSLALA-RRLGYR 181 (267)
T ss_pred cccCCCcccCCHHHHHHHHHHHHHHHHHHhCCCCc--eEECCCCccCHHHHHHH-HhCCCc
Confidence 88777777788888899999999999999999833 45556664 46667777 788886
No 36
>PF10074 DUF2285: Uncharacterized conserved protein (DUF2285); InterPro: IPR018754 This entry contains uncharacterised proteins of unknown function.
Probab=25.14 E-value=13 Score=34.07 Aligned_cols=27 Identities=19% Similarity=0.628 Sum_probs=24.0
Q ss_pred HHHHhcCHHHHHHHHHHHhCCcEEEEccee
Q 002542 103 RWWDEQSEAMQHEVKQLVGSGQLEFINGGM 132 (910)
Q Consensus 103 ~w~~~~~p~~~~~vk~lV~~GrlE~vgGgw 132 (910)
.||+. ...+.+++.||+.|++ +++|||
T Consensus 75 ~~W~~--~~~R~~~~rll~~a~~-l~~gGY 101 (106)
T PF10074_consen 75 DEWKD--SSLRRRVRRLLRRARA-LMEGGY 101 (106)
T ss_pred ccccC--hHHHHHHHHHHHHHHH-HHHhhH
Confidence 57864 7899999999999999 999998
No 37
>PF00538 Linker_histone: linker histone H1 and H5 family; InterPro: IPR005818 Histone proteins have central roles in both chromatin organisation (as structural units of the nucleosome) and gene regulation (as dynamic components that have a direct impact on DNA transcription and replication). Eukaryotic DNA wraps around a histone octamer to form a nucleosome, the first order of compaction of eukaryotic chromatin. The core histone octamer is composed of a central H3-H4 tetramer and two flanking H2A-H2B dimers. Each of the core histone contains a common structural motif, called the histone fold, which facilitates the interactions between the individual core histones. In addition to the core histones, there is a "linker histone" called H1 (or H5 in avian species). The linker histones present in all multicellular eukaryotes are the most divergent group of histones, with numerous cell type- and stage-specific variant. Linker histone H1 is an essential component of chromatin structure. H1 links nucleosomes into higher order structures. Histone H5 performs the same function as histone H1, and replaces H1 in certain cells. The structure of GH5, the globular domain of the linker histone H5 is known [, ]. The fold is similar to the DNA-binding domain of the catabolite gene activator protein, CAP, thus providing a possible model for the binding of GH5 to DNA. The linker histones, which do not contain the histone fold motif, are critical to the higher-order compaction of chromatin, because they bind to internucleosomal DNA and facilitate interactions between individual nucleosomes. In addition, H1 variants have been shown to be involved in the regulation of developmental genes. A common feature of this protein family is a tripartite structure in which a globular (H15) domain of about 80 amino acids is flanked by two less structured N- and C-terminal tails. The H15 domain is also characterised by high sequence homology among the family of linker histones. The highly conserved H15 domain is essential for the binding of H1 or H5 to the nucleosome. It consists of a three helix bundle (I-III), with a beta-hairpin at the C terminus. There is also a short three-residue stretch between helices I and II that is in the beta-strand conformation. Together with the C-terminal beta-hairpin, this strand forms the third strand of an antiparallel beta-sheet [, , , ]. Proteins known to contain a H15 domain are: - Eukaryotic histone H1. The histones H1 constitute a family with many variants, differing in their affinity for chromatin. Several variants are simultaneously present in a single cell. For example, the nucleated erythrocytes of birds contain both H1 and H5, the latter being an extreme variant of H1. - Eukaryotic MHYST family of histone acetyltransferase. Histone acetyltransferases transfer an acetyl group from acetyl-CoA to the epsylon- amino group of lysine within the basic NH2-termini of histones, which bind the acidic phosphates of DNA []. This entry represents the H15 domain.; GO: 0003677 DNA binding, 0006334 nucleosome assembly, 0000786 nucleosome, 0005634 nucleus; PDB: 2LSO_A 2RQP_A 1UHM_A 1UST_A 1GHC_A 1HST_A 1YQA_A 1USS_A.
Probab=21.26 E-value=2.8e+02 Score=23.55 Aligned_cols=31 Identities=13% Similarity=0.291 Sum_probs=23.5
Q ss_pred hHHHHHHHhcCH----------HHHHHHHHHHhCCcEEEEc
Q 002542 99 AFFQRWWDEQSE----------AMQHEVKQLVGSGQLEFIN 129 (910)
Q Consensus 99 ~~~~~w~~~~~p----------~~~~~vk~lV~~GrlE~vg 129 (910)
.-+.+|..+.++ ..+..++++|++|+|+-+.
T Consensus 25 ~aI~kyI~~~y~~~~~~~~~~~~l~~aLk~~v~~G~l~~~k 65 (77)
T PF00538_consen 25 QAIKKYIKAKYKVDLNPANFKSRLKRALKRGVEKGKLVQVK 65 (77)
T ss_dssp HHHHHHHHHHSSCCCCHTTHHHHHHHHHHHHHHCTSEEECS
T ss_pred HHHHHHHHHhcCcCCChHHHHHHHHHHHHHHHHCCcEEeec
Confidence 334677766542 3778999999999999887
No 38
>PF03755 YicC_N: YicC-like family, N-terminal region ; InterPro: IPR013527 Proteins in this entry are homologues of YicC (P23839 from SWISSPROT) from Escherichia coli. Although it is relatively poorly characterised YicC has been shown to be important for cells in the stationary phase, and essential for growth at high temperatures []. This domain is found at the N-terminal region of these proteins.
Probab=21.05 E-value=2.2e+02 Score=28.02 Aligned_cols=61 Identities=8% Similarity=0.107 Sum_probs=44.1
Q ss_pred HHHHhcCHHHHHHHHHHHhCCcEEEE-cceeee-ecccCCChHHHHHHHHHHHHHHHHHhCCC
Q 002542 103 RWWDEQSEAMQHEVKQLVGSGQLEFI-NGGMCM-HDEAVTHYIDMIDQTTLGHRFIKNEFGVT 163 (910)
Q Consensus 103 ~w~~~~~p~~~~~vk~lV~~GrlE~v-gGgwv~-~Dea~~~~esiIrql~~G~~~l~~~fG~~ 163 (910)
+.|....++.++.|++.++.|++++. .=-+.. ....+.=-+.+++++....+.+++.+|..
T Consensus 39 ~~l~~lE~~ir~~i~~~l~RGkV~v~i~~~~~~~~~~~~~in~~l~~~y~~~l~~l~~~~~~~ 101 (159)
T PF03755_consen 39 RELSSLEPEIRKLIRKKLSRGKVEVSIRVERSSESAVELRINEELAKAYYEALKELAEELGLA 101 (159)
T ss_pred HHHHHHHHHHHHHHHHhcccceEEEEEEEEECcccCCCcccCHHHHHHHHHHHHHHHHHcCCC
Confidence 45666778999999999999999874 211111 12223335778999999999999999874
No 39
>PF01479 S4: S4 domain; InterPro: IPR002942 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterised, small proteins that may be involved in translation regulation []. The S4 domain probably mediates binding to RNA.; GO: 0003723 RNA binding; PDB: 3BBU_A 1DM9_B 2K6P_A 3U5G_E 3U5C_E 3IZB_D 2XZM_D 2XZN_D 3O30_E 3O2Z_E ....
Probab=20.48 E-value=91 Score=23.55 Aligned_cols=31 Identities=19% Similarity=0.411 Sum_probs=23.7
Q ss_pred HHHHhcCHHH-HHHHHHHHhCCcEEEEcceeee
Q 002542 103 RWWDEQSEAM-QHEVKQLVGSGQLEFINGGMCM 134 (910)
Q Consensus 103 ~w~~~~~p~~-~~~vk~lV~~GrlE~vgGgwv~ 134 (910)
.|..+..... +...+++|++|++ .|||--+.
T Consensus 5 ~~L~~~~~~~sr~~a~~~I~~g~V-~VNg~~v~ 36 (48)
T PF01479_consen 5 KFLSRLGLASSRSEARRLIKQGRV-KVNGKVVK 36 (48)
T ss_dssp HHHHHTTSSSSHHHHHHHHHTTTE-EETTEEES
T ss_pred HHHHHcCCcCCHHHHHHhcCCCEE-EECCEEEc
Confidence 3444555554 8999999999999 78887665
No 40
>PF08220 HTH_DeoR: DeoR-like helix-turn-helix domain; InterPro: IPR001034 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism. This family of prokaryotic regulators is named after the Escherichia coli protein DeoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerisation domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular
Probab=20.23 E-value=4.4e+02 Score=20.84 Aligned_cols=53 Identities=13% Similarity=0.273 Sum_probs=35.4
Q ss_pred HHHHHHHhCCCCeEEEechhHHHHHHHhcCHHHHHHHHHHHhCCcEEEEcceeeeecc
Q 002542 80 SVIPELLADKNRKFIYVEQAFFQRWWDEQSEAMQHEVKQLVGSGQLEFINGGMCMHDE 137 (910)
Q Consensus 80 ~vi~~L~~~p~~kF~~~e~~~~~~w~~~~~p~~~~~vk~lV~~GrlE~vgGgwv~~De 137 (910)
.+++.|.+++. ....| +.+-+.-.....+..+..|.+.|.+.-+.||++..|+
T Consensus 4 ~Il~~l~~~~~--~s~~e---la~~~~VS~~TiRRDl~~L~~~g~i~r~~GG~~~~~~ 56 (57)
T PF08220_consen 4 QILELLKEKGK--VSVKE---LAEEFGVSEMTIRRDLNKLEKQGLIKRTHGGAVLNDS 56 (57)
T ss_pred HHHHHHHHcCC--EEHHH---HHHHHCcCHHHHHHHHHHHHHCCCEEEEcCEEEeCCC
Confidence 45556665532 22222 2233444456778999999999999999999987664
Done!