Query 002542
Match_columns 910
No_of_seqs 260 out of 1237
Neff 8.2
Searched_HMMs 29240
Date Tue Mar 26 16:01:06 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002542.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1262-1266//hhsearch_pdb/002542hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bvx_A Alpha-mannosidase 2; fa 1.0 1 1 1412.9 83.5 833 28-910 69-963 (1045)
2 2wyh_A Alpha-mannosidase; hydr 1.0 1 1 1130.2 69.5 756 29-910 15-860 (923)
3 3lvt_A Glycosyl hydrolase, fam 1.0 1 1 1038.9 72.2 727 37-875 4-807 (899)
4 1o7d_A Lysosomal alpha-mannosi 1.0 1 1 627.9 31.5 294 27-322 1-297 (298)
5 1o7d_D Lysosomal alpha-mannosi 1.0 1 1 520.0 29.2 273 601-880 2-274 (282)
6 1o7d_C Lysosomal alpha-mannosi 1.0 1 1 235.4 17.4 150 399-581 2-151 (159)
7 1k1x_A 4-alpha-glucanotransfer 1.0 1 1 176.8 31.3 251 38-336 2-260 (659)
8 1o7d_B Lysosomal alpha-mannosi 1.0 1 1 164.8 7.7 74 320-393 2-75 (84)
9 3p0b_A TT1467 protein; glycosi 1.0 1 1 96.7 15.8 298 105-424 137-494 (540)
10 3n98_A Alpha-amylase, GH57 fam 1.0 1 1 91.7 18.6 305 105-434 116-491 (562)
No 1
>3bvx_A Alpha-mannosidase 2; family 38 glycoysl hydrolase, glycosidase, golgi apparatus, membrane, signal-anchor, transmembrane; HET: WZ5; 1.10A {Drosophila melanogaster} SCOP: a.8.3.1 b.30.5.6 c.6.2.1 PDB: 3bud_A 3buq_A* 3bvt_A* 3bui_A* 3bvv_A* 3bvw_A* 3bvu_A* 3cv5_A* 3czn_A* 3czs_A* 2ow6_A* 1r33_A* 1r34_A* 1tqs_A* 1tqt_A* 1tqu_A* 1tqv_A* 1tqw_A* 2alw_A* 2f18_A* ...
Probab=1.00 E-value=1 Score=1412.92 Aligned_cols=833 Identities=26% Similarity=0.441 Sum_probs=700.0
Q ss_pred EECCCCCCCCCCEEEEEEECCCCCCCCCHHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHH
Q ss_conf 73389998898049999926477886203233114347776224779999999999987199981999413579999972
Q 002542 28 VYNTSQGIVPGKLNVHLVAHTHDDVGWLKTVDQYYVGSNNSIQGACVQNVLDSVIPELLADKNRKFIYVEQAFFQRWWDE 107 (910)
Q Consensus 28 ~~~~~~~~~~~~~~VhlvpHSH~D~gWl~t~d~y~~~~~~~~~~~~v~~il~~vi~~L~~~p~~kF~~~e~~~~~~ww~~ 107 (910)
.|+.+......+++||+|||||||+||+||+++|+. ..+++++++|++.|+++|++||+|+|+++|++||++
T Consensus 69 ~~~~~~~~~~~~~~V~lV~HsH~D~gWl~t~~e~~~--------~~~~~~~~~vl~~L~~~p~~~F~~~e~~~l~~w~~e 140 (1045)
T 3bvx_A 69 KYDPLKYNAHHKLKVFVVPHSHNDPGWIQTFEEYYQ--------HDTKHILSNALRHLHDNPEMKFIWAEISYFARFYHD 140 (1045)
T ss_dssp CCCGGGSBTTBCEEEEEEEEEECCSSSSSCHHHHHH--------HTHHHHHHHHHHHHHHCTTCCEEECCHHHHHHHHHH
T ss_pred HHHCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHH--------HHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHH
T ss_conf 452214477786389999357888653444877615--------999999999999997799967999548999999997
Q ss_pred CCHHHHHHHHHHHHCCCEEEECCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHC
Q ss_conf 19899999999995896899820131201357896999999997999999880999831166289989845589985313
Q 002542 108 QSEAMQHEVKQLVGSGQLEFINGGMCMHDEAVTHYIDMIDQTTLGHRFIKNEFGVTPRIGWQIDPFGHSAVQAYLLGSEV 187 (910)
Q Consensus 108 ~~p~~~~~vk~LV~~GrlE~v~Ggwv~~Dea~~~~es~I~ql~~G~~~l~~~fG~~p~vgw~iD~FGhs~~~p~ll~~~~ 187 (910)
++|+.+++||+||++|||||+||||||+|||++||||+||||++||+|++++||+.|++||+|||||||+++|||| ++|
T Consensus 141 ~~Pe~~~~vk~lV~~Grle~~gG~Wv~~De~~~~~EslirQl~~G~~~~~~~FG~~~~~~W~pD~FG~s~~lPqil-~~~ 219 (1045)
T 3bvx_A 141 LGENKKLQMKSIVKNGQLEFVTGGWVMPDEANSHWRNVLLQLTEGQTWLKQFMNVTPTASWAIAPFGHSPTMPYIL-QKS 219 (1045)
T ss_dssp SCHHHHHHHHHHHHTTSEEESSCCSSCBCSSSCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCSSSBCTHHHHHH-HTT
T ss_pred CCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCHHHHHHH-HHC
T ss_conf 7999999999997589999988701141156799899999999999999998299972587279998658999999-975
Q ss_pred CCCEEEEECCCHHHHHHHCCCCCEEEEEECCCCCCCCCEEEEEECCC-CCCC-----CCC----CCCCCCCCC----CCC
Q ss_conf 99478882236565763202784059996089999987027763899-9889-----999----864324788----886
Q 002542 188 GFDSFFYGRIDYQDRAKRKNEKSLEVVWQGSRSLGSSAQIFAGAFPE-NYEP-----PPG----GFYFEVNDK----YPI 253 (910)
Q Consensus 188 G~~~~~~~R~~~~~k~~~~~~~~~eF~W~g~d~~~~gs~I~t~~~~~-~Y~~-----p~~----~f~f~~~~~----~~~ 253 (910)
||++++|+|++|++++.|+..+.+||+|+|+++..+|++||||++|. +|+. |+. +|+|+.+.+ |++
T Consensus 220 Gi~~~~~~R~~~~~~~~~~~~k~~eF~W~~~w~~~dGs~Ilt~~~p~~~Y~~~~~~gp~~~~c~~fdf~~l~~~~~~~~~ 299 (1045)
T 3bvx_A 220 GFKNMLIQRTHYSVKKELAQQRQLEFLWRQIWDNKGDTALFTHMMPFYSYDIPHTCGPDPKVCCQFDFKRMGSFGLSCPW 299 (1045)
T ss_dssp TCCEEEECCCCHHHHHHHHHTTCSEEEECCTTCSSCTTCEEEEECCSSCSSGGGTSSSCHHHHGGGCGGGSSTTSCCCTT
T ss_pred CCCEEEEECCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99759994144200000123678459983777799999489986156665766556888553312120224565445755
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCHHHH---HHHHHHHHHHHHCCC--CEEEEECCH
Q ss_conf 226821113548999999999999850005898389960578765314788---998999999984179--748998493
Q 002542 254 IQDNIKLFDYNVQDRVNDFVAAAISQANITRTNHIMWTMGTDFKYQYARTW---FRQLDKFIHYVNMDG--RVNALYSTP 328 (910)
Q Consensus 254 ~~d~~~~~~~nv~~~~~~~~~~~~~~~~~~~t~~il~~~G~Df~y~~a~~~---f~n~~~li~~~N~~~--~~~i~~sT~ 328 (910)
..++..+.++|+++|++.+++++++++.+|+++++|+|+|+||+|.+|.+| |+||+++|+++|+.+ .++++|||+
T Consensus 300 ~~~p~~~~~~nv~~r~~~~~~~~~~~~~~~~t~~~l~~~G~d~~~~~~~~~~~~~~n~~~li~~in~~~~~~~~v~~sT~ 379 (1045)
T 3bvx_A 300 KVPPRTISDQNVAARSDLLVDQWKKKAELYRTNVLLIPLGDDFRFKQNTEWDVQRVNYERLFEHINSQAHFNVQAQFGTL 379 (1045)
T ss_dssp SCCCCCCCTTTHHHHHHHHHHHHHHHHTTSSSSEEEEEEEEETCSCSHHHHHHHHHHHHHHHHHHHHCGGGCEEEEECCH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCH
T ss_conf 67765562799999999999999986103578869999547988865225678888899999998608887706998799
Q ss_pred HHHHHHHHHCC----CCCCCCCCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCC---CCCCCCHH
Q ss_conf 43799988269----999986778843553478852203203035789999987999999988875166---78997458
Q 002542 329 SIYTDAKYASN----ESWPLKTDDFFPYADRAHAYWTGYFSSRPALKRYVKVMSGYYLAARQLEFYIGR---SETGHNTD 401 (910)
Q Consensus 329 ~~Yf~a~~~~~----~~lp~~~gDffpy~~~~~~yWtG~yTSR~~~K~~~R~~e~~L~~ae~l~~l~~~---~~~~~~~~ 401 (910)
++||+++++.. ..||+++||||||++++++||+|||||||++|+++|++|++|++||+|++++.. .++...++
T Consensus 380 ~~yf~~l~~~~~~~~~~lp~~~Ge~~~~~~~~~~yw~G~yTSr~~~K~~nR~~e~~L~~aE~l~ala~~~~~~~~~~~L~ 459 (1045)
T 3bvx_A 380 QEYFDAVHQAERAGQAEFPTLSGDFFTYADRSDNYWSGYYTSRPYHKRMDRVLMHYVRAAEMLSAWHSWDGMARIEERLE 459 (1045)
T ss_dssp HHHHHHHHHHHHTTSCCCCEEESCBCSCEEETTEECCGGGTSSHHHHHHHHHHHHHHHHHHHHHHTSCCCGGGCHHHHHH
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
T ss_conf 99999998652144466861477436656677630063260568999999999999999999999987617876089999
Q ss_pred HHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC---CCCCCCCCCCCCCCC
Q ss_conf 99999997613565457760334899999999999999999999999862599999989888---552124665544578
Q 002542 402 SLADALAIAQHHDAVTGTEKQHVANDYAKRLAIGYTEAEEVVATALACLVDSPSDNGCGRST---TRFQQCPLLNISYCP 478 (910)
Q Consensus 402 ~l~~~l~~~QhHDaItGTs~~~V~~dy~~rl~~a~~~~~~~~~~~l~~L~~~~~~~~~~~~~---~~~~~~~~ln~s~c~ 478 (910)
++|++|+++||||+||||++++|++||..||.++...++.++..+++.|+.... ..+..+. .++..|.+++.+.|+
T Consensus 460 ~~wk~lll~QhHD~i~Gts~~~V~~d~~~rl~~a~~~~~~l~~~al~~L~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 538 (1045)
T 3bvx_A 460 QARRELSLFQHHDGITGTAKTHVVVDYEQRMQEALKACQMVMQQSVYRLLTKPS-IYSPDFSFSYFTLDDSRWPGSGVED 538 (1045)
T ss_dssp HHHHHHHHHTBTTTTTSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTBCTT-TCCCCTTSCSEEEECSSSSCTTTCC
T ss_pred HHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCCCCCCCCCCHHHHCCCCCCCCC
T ss_conf 999997550256677775807999999999999999999999999999863434-3344432211110121012323466
Q ss_pred CCCCCCCCCC---EEEEEEECCCCCEEEEEEEEEEECCCEEEECCCCCEEEEEEECCCCCCCCHHHHHHHHCCCCCCCCC
Q ss_conf 8643457996---2899999399914869999998558389992699678689818984222001335432059999999
Q 002542 479 ASEIDFSNGK---NLVIVIYNSLGWKREDIIRIPVANGDVTVFNSEGKIIESQLVPPADAFMDLRDYYVRAYLGRNPMVP 555 (910)
Q Consensus 479 ~~~~~~~~~~---~~~v~v~Npl~~~r~~~V~i~v~~~~~~V~d~~G~~V~~Qi~~~~~~~~~~~~~~~~~~~~~~~~~~ 555 (910)
........++ ...++|||||+|+|+++|+++|..+.+.|+|.+|++|++|+++.+.....+....+. .....
T Consensus 539 ~~~~i~~~~~~~~~~~vvvfN~L~~~r~~~V~v~v~~~~~~V~D~~G~~v~~Qi~~~~~~~~~~~~~~~~-----~~~~~ 613 (1045)
T 3bvx_A 539 SRTTIILGEDILPSKHVVMHNTLPHWREQLVDFYVSSPFVSVTDLANNPVEAQVSPVWSWHHDTLTKTIH-----PQGST 613 (1045)
T ss_dssp CCCEECCBTTTBSEEEEEEEECSSSCEEEEEEEEESCSCEEEEETTCCEECEEEEEEEEEEEETTTTEEE-----EEEEE
T ss_pred CCCCCCCCCCCCCCCEEEEECCCCCCEEEEEEEEECCCCEEEECCCCCEEEEEEEECCCCCCCCCCCCCC-----CCCCC
T ss_conf 5443234666567746999949985022699999516866998289898758996323444431111244-----55778
Q ss_pred CCEEEEEEEECCCCCEEEEEEEECCCCCCCCCCCCC----------EEC-CCCCCCCEEEECCEE------EEEEECCCC
Q ss_conf 937999974249994389999954789976433430----------001-368997118703519------999978999
Q 002542 556 PKYWLAFPVSVPPLGFSTYTISSVKRGGGHSIRSSI----------QTF-ESSDKSTVEVGQGNL------KLIFSSDKS 618 (910)
Q Consensus 556 ~~~~l~f~a~iPplG~~~y~i~~~~~~~~~~~~~~~----------~~~-~~~~~~~~~ieN~~~------~i~~d~~~G 618 (910)
..|+|+|.++||||||++|.|............+++ ... .....+...|||++| +|+|++ +|
T Consensus 614 ~~~~L~f~a~vP~lG~~ty~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~leN~~~~~~~~~~v~fd~-~G 692 (1045)
T 3bvx_A 614 TKYRIIFKARVPPMGLATYVLTISDSKPEHTSYASNLLLRKNPTSLPLGQYPEDVKFGDPREISLRVGNGPTLAFSE-QG 692 (1045)
T ss_dssp EEEEEEEEEEECTTEEEEEEEEECSSCCTTEEECEEEEECSSCCCCCCTTCSSCCEEECCCCEEEECTTSCEEEECT-TS
T ss_pred CCEEEEEEECCCCCEEEEEEEEECCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCEEEECC-CC
T ss_conf 72799998013885369999983687655444322000135664221234566777425504522156653799878-88
Q ss_pred CCEEEEECCCCCEEEEEEEEEEEECCCCCCCCCCCCCCCEEEECCCCE-EEECCCCCEEEEEECCCEEEEEEEECCEEEE
Q ss_conf 807999257861377644579962379999999999863168059980-4632885009999815389999998144999
Q 002542 619 KPINYINNKSLVEESVEQSYSFYPAYNGTNDKAPQNAGAYIFRPNGTF-FIKSEGQVPLTVMRGPILDEVHQKINEWIYQ 697 (910)
Q Consensus 619 ~l~si~dk~~g~~~~~~~~~~~Y~~~~G~~~~~~~~sGAYiF~P~~~~-~~~~~~~~~i~v~~Gpl~~~v~~~~~~~i~~ 697 (910)
.|+||+||++|+++.+.++|.+|.+..| ++.||||+|+|++.. ++. ...+.+.+++||++++|++.+ .+++|
T Consensus 693 ~L~si~dk~~g~e~~~~~~f~~Y~~~~~-----~~~sgaY~F~P~~~~~~~~-~~~~~~~v~~Gpl~~ev~~~~-~~i~q 765 (1045)
T 3bvx_A 693 LLKSIQLTQDSPHVPVHFKFLKYGVRSH-----GDRSGAYLFLPNGPASPVE-LGQPVVLVTKGKLESSVSVGL-PSVVH 765 (1045)
T ss_dssp CEEEEECSTTSCCEEEEEEEEEECBCSS-----SCCCCSSCCCBSSSCEECC-CCSCCEEEEECSSCEEEEEEE-TTEEE
T ss_pred CEEEEEECCCCEEEEEEEEEEEEECCCC-----CCCCCCEEECCCCCCCCCC-CCCCEEEEEECCEEEEEEEEE-EEEEE
T ss_conf 6799997479818877667888725668-----9988613765798876534-688459999688689999997-25999
Q ss_pred EEEEECCCCEEEEEEEECCEECCCCCCCEEEEEEEECCCCCCEEEECCCCCCEEECCCCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf 99994699818999999431025899948999997407889769970688811110245678865557876442068600
Q 002542 698 VTRLYKGKEHVEVEFIVGPIPVDDGLGKEVVTHITSTLETNKTFYTDSNGRDFIKRIRDYRTDWDLEVNEPVAGNYYPIN 777 (910)
Q Consensus 698 ~vrL~~~~~~ie~e~~v~~i~~~~~~~~ei~~~f~t~i~s~~~fytDsng~~~ikR~~~~r~~w~~~~~~pv~~NyYPv~ 777 (910)
++|| +.++||++++|++ .+..|||++++|+|+|++++.||||+|||++++|+++.+ +|+++|||||+
T Consensus 766 ~irL--~~~~ieie~~Vd~---~~~~~~el~~rf~t~i~s~~~fyTD~nG~~~ikR~~~~~--------~p~~~NyYPv~ 832 (1045)
T 3bvx_A 766 QTIM--RGGAPEIRNLVDI---GSLDNTEIVMRLETHIDSGDIFYTDLNGLQFIKRRRLDK--------LPLQANYYPIP 832 (1045)
T ss_dssp EEEE--SSSSCEEEEEECC---TTCTTEEEEEEEEECCCCTTEEEEEETTTEEEEEECCTT--------SCGGGGCEEES
T ss_pred EEEE--CCEEEEEEEEEEC---CCCCCEEEEEEEECCCCCCCEEEEECCCCEEEECCCCCC--------CCCCCCEEEEE
T ss_conf 9998--9912899999935---788874899994456578873899268863687577888--------87314168741
Q ss_pred EEEEEEECCCCEEEEECCCCCEEECCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCC
Q ss_conf 16999957731499830466322022776899992024678985711123556443456678289859999960278752
Q 002542 778 LGIYMQDVKKEFSLLVDRALGGSSIVDGEVELMLHRRLLLDDSRGVAEALNETDCVLDECKGLTIQGKYYFRIDTIGDGA 857 (910)
Q Consensus 778 s~i~i~D~~~~ltvltdr~~G~ssl~~G~ielmL~Rr~~~dD~rGvge~l~e~~~~~~~~~g~~~~~~~~l~~~~~~~~~ 857 (910)
++|+|+|++.||||++||+||++|+++|+||||||||+++||+|||||||||+ ++++|+|||+|++...++
T Consensus 833 s~~~i~D~~~~ltvl~drs~G~sSl~~G~lElmlhRrl~~DD~rGvge~l~d~---------~~~~~~~~l~l~~~~~~~ 903 (1045)
T 3bvx_A 833 SGMFIEDANTRLTLLTGQPLGGSSLASGELEIMQDRRLASDDERGLGQGVLDN---------KPVLHIYRLVLEKVNNCV 903 (1045)
T ss_dssp SEEEEECSSEEEEEEESSCEEEECCSTTEEEEEEEEEBCSCCSSSCCSCBCCC---------CCEEEEEEEEEEECTTSC
T ss_pred EEEEEECCCEEEEEEECCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCC---------CEEEEEEEEEEECCCCCC
T ss_conf 36899759826999956776666567975899996641257765546666677---------400048999982565445
Q ss_pred H------------HCCCCHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCC
Q ss_conf 0------------1121002330796144202578865677754335787898999652152159
Q 002542 858 K------------WRRTFGQEIYSPPLLAFTEEDGDSWRNSHVTTFSGIDSSYSLPDNVAIITLQ 910 (910)
Q Consensus 858 ~------------~~r~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lp~~vhlltl~ 910 (910)
. .+|..++++.+||++|++.... + .....+|+++.. +||||||||||+
T Consensus 904 ~~~~~~~~~~~s~~~~~~~~~l~~p~~~~~~~~~~--~-~~~~~~~~~l~~--~lP~~vhlltL~ 963 (1045)
T 3bvx_A 904 RPSKLHPAGYLTSAAHKASQSLLDPLDKFIFAENE--W-IGAQGQFGGDHP--SAREDLDVSVMR 963 (1045)
T ss_dssp CCCTTCSEECCCHHHHHHHHHHHSCCEEEEECSSC--C-TTBCSEECTTSC--CCCTTEEEEEEE
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHCCCCEEECCCCC--C-CCCCCCCCCCCC--CCCCCEEEEEEE
T ss_conf 44545654445788999998873974533525766--4-323456785444--699877999757
No 2
>2wyh_A Alpha-mannosidase; hydrolase, glycosidase, glycoside hydrolase; 1.90A {Streptococcus pyogenes} PDB: 2wyi_A*
Probab=1.00 E-value=1 Score=1130.23 Aligned_cols=756 Identities=16% Similarity=0.195 Sum_probs=615.4
Q ss_pred ECCCCCCCCCCEEEEEEECCCCCCCCCHHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCE-EEEECHHHHHHHHHH
Q ss_conf 3389998898049999926477886203233114347776224779999999999987199981-999413579999972
Q 002542 29 YNTSQGIVPGKLNVHLVAHTHDDVGWLKTVDQYYVGSNNSIQGACVQNVLDSVIPELLADKNRK-FIYVEQAFFQRWWDE 107 (910)
Q Consensus 29 ~~~~~~~~~~~~~VhlvpHSH~D~gWl~t~d~y~~~~~~~~~~~~v~~il~~vi~~L~~~p~~k-F~~~e~~~~~~ww~~ 107 (910)
|++|+..++++++||+|||||||+||+||+++|+ .+++++|++|++.|+++|++| |+|++++++.+||.+
T Consensus 15 ~~~~~~~~~~~~~v~~v~HsH~D~~Wl~t~~~~~---------~~~~~~~~~vl~~l~~~p~~~~F~~~~q~~~~~~~~~ 85 (923)
T 2wyh_A 15 EVLFQGPAMATKKVHIISHSHWDREWYMAYEQHH---------MRLINLIDDLLEVFQTDPDFHSFHLDGQTIILDDYLK 85 (923)
T ss_dssp HHHSCCCCCCCEEEEEEEBCBCCSSSSSCHHHHH---------HHHHHHHHHHHHHHHHCTTCCCEECTTBTHHHHHHHH
T ss_pred HHCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHH---------HHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHH
T ss_conf 3215788887528999733788930050999999---------9999999999999975988746999277999999987
Q ss_pred CCHHHHHHHHHHHHCCCEEEECCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHC
Q ss_conf 19899999999995896899820131201357896999999997999999880999831166289989845589985313
Q 002542 108 QSEAMQHEVKQLVGSGQLEFINGGMCMHDEAVTHYIDMIDQTTLGHRFIKNEFGVTPRIGWQIDPFGHSAVQAYLLGSEV 187 (910)
Q Consensus 108 ~~p~~~~~vk~LV~~GrlE~v~Ggwv~~Dea~~~~es~I~ql~~G~~~l~~~fG~~p~vgw~iD~FGhs~~~p~ll~~~~ 187 (910)
++|+.+++||+||++||||+ ||||||+||+++|+||+||||++||+|+++ ||+.|++||+|||||||+++|||| +++
T Consensus 86 ~~p~~~~~vk~lV~~Grlei-G~wYv~~D~~~~~~es~irq~~~G~~~~~~-fG~~~~~~w~pD~FG~s~~lPqil-~~~ 162 (923)
T 2wyh_A 86 VRPEREPEIRQAIASGKLRI-GPFYILQDDFLTSSESNVRNMLIGKEDCDR-WGASVPLGYFPDTFGNMGQTPQLM-LKA 162 (923)
T ss_dssp HCGGGHHHHHHHHHTTSEEC-CSBSSCBCSTTSCHHHHHHHHHHHHHHHHH-HTCCCSSEEESSCSSBCTTHHHHH-HTT
T ss_pred HCHHHHHHHHHHHHCCCEEE-EEEEECCCCCCCCHHHHHHHHHHHHHHHHH-CCCCCCEEEECCCCCCCHHHHHHH-HHC
T ss_conf 79999999999998599898-411441454669989999999999999998-199976248148998626899999-976
Q ss_pred CCCEEEEECCC----HHHH---HHHCCCCCEEEEEECCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99478882236----5657---6320278405999608999998702776389998899998643247888862268211
Q 002542 188 GFDSFFYGRID----YQDR---AKRKNEKSLEVVWQGSRSLGSSAQIFAGAFPENYEPPPGGFYFEVNDKYPIIQDNIKL 260 (910)
Q Consensus 188 G~~~~~~~R~~----~~~k---~~~~~~~~~eF~W~g~d~~~~gs~I~t~~~~~~Y~~p~~~f~f~~~~~~~~~~d~~~~ 260 (910)
||++++|+|++ |+++ ..+...+.+||+|+|+| |++||||++|.+|+.+ ..+. .
T Consensus 163 Gi~~~~~~R~~~~~~~n~~~~~~~~~~~~~~eF~W~g~d----Gs~Ilt~~~p~~Y~~g-~~~~---------------~ 222 (923)
T 2wyh_A 163 GLQAAAFGRGIRPTGFNNQVDTSEKYSSQFSEISWQGPD----NSRILGLLFANWYSNG-NEIP---------------T 222 (923)
T ss_dssp TCCEEEECSSCEECCSSSCCCTTCTTEESSSEEEEECTT----CCEEEEEECTTCTTTT-CSCC---------------S
T ss_pred CCCEEEEEECCCCCCCCCCCCCHHHCCCCCCEEEEECCC----CCEEEEEECCCCCCCC-CCCC---------------C
T ss_conf 997899970235322332222112115888559998899----9828999777776689-8799---------------8
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHC-CCCEEEEECCHHHHHHHHHHC-
Q ss_conf 135489999999999998500058983899605787653147889989999999841-797489984934379998826-
Q 002542 261 FDYNVQDRVNDFVAAAISQANITRTNHIMWTMGTDFKYQYARTWFRQLDKFIHYVNM-DGRVNALYSTPSIYTDAKYAS- 338 (910)
Q Consensus 261 ~~~nv~~~~~~~~~~~~~~~~~~~t~~il~~~G~Df~y~~a~~~f~n~~~li~~~N~-~~~~~i~~sT~~~Yf~a~~~~- 338 (910)
...|++.+++.+++.+.+ .++++++|+|+|+||+|.. +||+++|+++|+ .+.++++|||+++||++++++
T Consensus 223 ~~~~v~~~~~~~~~~~~~---~~~t~~~l~~~G~D~~~~~-----~~~~~~i~~~n~~~~~~~~~~sT~~~yf~~l~~~~ 294 (923)
T 2wyh_A 223 TEAEARLFWDKKLADAER---FASTKHLLMMNGCDHQPVQ-----LDVTKAIALANQLYPDYEFVHSCFEDYLADLADDL 294 (923)
T ss_dssp SHHHHHHHHHHHHHHHHH---HCSSSEEEEEECCBTCCCC-----TTHHHHHHHHHHHCTTEEEEECCHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHHHHH---CCCCCEEEEEEECCCCCCC-----HHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHC
T ss_conf 989999999999999985---4888709999603989863-----42999999998548985599879999999987652
Q ss_pred CCCCCCCCCCCC-CCCCCCCCCC-C--EEEECCHHHHHHHHHHHHHH-HHHHHHHHHH---CCCCCCCCHHHHHHHHHHH
Q ss_conf 999998677884-3553478852-2--03203035789999987999-9999888751---6678997458999999976
Q 002542 339 NESWPLKTDDFF-PYADRAHAYW-T--GYFSSRPALKRYVKVMSGYY-LAARQLEFYI---GRSETGHNTDSLADALAIA 410 (910)
Q Consensus 339 ~~~lp~~~gDff-py~~~~~~yW-t--G~yTSR~~~K~~~R~~e~~L-~~ae~l~~l~---~~~~~~~~~~~l~~~l~~~ 410 (910)
...||+++|||+ ||+++ | | |||||||++|+++|++|++| ++||+|++++ +..|+...++++|++|+++
T Consensus 295 ~~~lp~~~GEl~~~~~~~----W~th~G~~tSr~~~K~~nR~~E~~L~~~aE~l~~la~~~g~~yp~~~L~~~Wk~ll~~ 370 (923)
T 2wyh_A 295 PENLSTVQGEITSQETDG----WYTLANTASARIYLKQANTRVSRQLENITEPLAAMAYEVTSTYPHDQLRYAWKTLMQN 370 (923)
T ss_dssp CSCCCEEESCBSCTTSCS----SSSCGGGGGTTHHHHHHHHHHHHHHHHTHHHHHHHHHHHHSCCCHHHHHHHHHHHHTT
T ss_pred CCCCCEECCCCCCCCCCC----CEECCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCC
T ss_conf 256854303445755566----2114888526899999999999999999999999999728888668999999997562
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 13565457760334899999999999999999999999862599999989888552124665544578864345799628
Q 002542 411 QHHDAVTGTEKQHVANDYAKRLAIGYTEAEEVVATALACLVDSPSDNGCGRSTTRFQQCPLLNISYCPASEIDFSNGKNL 490 (910)
Q Consensus 411 QhHDaItGTs~~~V~~dy~~rl~~a~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~ln~s~c~~~~~~~~~~~~~ 490 (910)
||||+||||++++|++||..||.++...++.+++.+++.|+..... + . . .++..
T Consensus 371 Q~HD~i~Gts~~~V~~d~~~~~~~~~~~~~~l~~~al~~l~~~~~~------------------~----~---~-~~~~~ 424 (923)
T 2wyh_A 371 HPHDSICGCSVDSVHREMMTRFEKAYEVGHYLAKEAAKQIADAIDT------------------R----D---F-PMDSQ 424 (923)
T ss_dssp CBHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTBCC------------------T----T---S-CTTSE
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC------------------C----C---C-CCCCE
T ss_conf 7876757758779999999999999999999999999999744566------------------6----6---7-88840
Q ss_pred EEEEECCCCCEEEEEEEEEEE-------------------------CCCEEEECCCCCEEE-EEEECCCCCCCCHHHHHH
Q ss_conf 999993999148699999985-------------------------583899926996786-898189842220013354
Q 002542 491 VIVIYNSLGWKREDIIRIPVA-------------------------NGDVTVFNSEGKIIE-SQLVPPADAFMDLRDYYV 544 (910)
Q Consensus 491 ~v~v~Npl~~~r~~~V~i~v~-------------------------~~~~~V~d~~G~~V~-~Qi~~~~~~~~~~~~~~~ 544 (910)
.++|||||+|+|+++|++++. ...+.|+|.+|++|| +|+++....... .+
T Consensus 425 ~vvvfN~l~~~r~~vV~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~G~~v~~~qi~~~~~~~~~----~~ 500 (923)
T 2wyh_A 425 PFVLFNTSGHSKTSVAELSLTWKKYHFGQRFPKEVYQEAQEYLARLSQSFQIIDTSGQVRPEAEILGTSIAFDY----DL 500 (923)
T ss_dssp EEEEEECSSSCEEEEEEEEEEEEEEECTTSCHHHHHHHHHHHHHTCCSEEEEECTTCCBCTTCEEEEEEEEEEE----EC
T ss_pred EEEEECCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCHHHHHHCCCCCCEEEECCCCCEECCEEEEECCCCCCC----CC
T ss_conf 89999499964758999999725333222343211000011210367877999799899551999851234442----25
Q ss_pred HHCCC-CCCCCCCCEEEEEEEECCCCCEEEEEEEECCCCCCCCCCCCCEECCCC-CCCCEEEECCEEEEEEECCCCCCEE
Q ss_conf 32059-999999937999974249994389999954789976433430001368-9971187035199999789998079
Q 002542 545 RAYLG-RNPMVPPKYWLAFPVSVPPLGFSTYTISSVKRGGGHSIRSSIQTFESS-DKSTVEVGQGNLKLIFSSDKSKPIN 622 (910)
Q Consensus 545 ~~~~~-~~~~~~~~~~l~f~a~iPplG~~~y~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~ieN~~~~i~~d~~~G~l~s 622 (910)
. ..+ ..++....++|.|.++||||||++|.|.......... .. .. ..+..+|||++++|+|| .+|.+ |
T Consensus 501 ~-~~~~~~~~~~~~~~l~f~a~vP~lG~~~~~i~~~~~~~~~~----~~---~~~~~~~~~leN~~~~v~~d-~~G~l-s 570 (923)
T 2wyh_A 501 P-KRSFREPYFAIKVRLRLPITLPAMSWKTLALKLGNETTPSE----TV---SLYDDSNQCLENGFLKVMIQ-TDGRL-T 570 (923)
T ss_dssp C-SSSCCEEEEEEEEEEEEEEEECTTEEEEEEEEEEC----------CC---CSEETTTTEEECSSEEEEEC-TTSCE-E
T ss_pred C-CCCCCCCCCEEEEEEEEEEECCCCCEEEEEEEECCCCCCCC----CC---CCCCCCCCEEECCEEEEEEE-CCCCE-E
T ss_conf 5-55665653103699999997387500899999888766665----31---01367872575680899990-89878-9
Q ss_pred EEECCCCCEEEEEEEEEEEECCCCCCCCCCCCCCCEEEECCCCE-EEE-CCCCCEEEEE-ECCCEEEEEEEEC-------
Q ss_conf 99257861377644579962379999999999863168059980-463-2885009999-8153899999981-------
Q 002542 623 YINNKSLVEESVEQSYSFYPAYNGTNDKAPQNAGAYIFRPNGTF-FIK-SEGQVPLTVM-RGPILDEVHQKIN------- 692 (910)
Q Consensus 623 i~dk~~g~~~~~~~~~~~Y~~~~G~~~~~~~~sGAYiF~P~~~~-~~~-~~~~~~i~v~-~Gpl~~~v~~~~~------- 692 (910)
|+||++|+++. +|..|... ++.||||+|+|.+.. ++. ......++++ +||++++|++.+.
T Consensus 571 i~dk~~gr~~~---~~~~y~d~-------~d~~day~f~p~~~~~~~~~~~~~~~i~v~~~gpl~~~v~~~~~~~vP~~~ 640 (923)
T 2wyh_A 571 ITDKQSGLIYQ---DLLRFEDC-------GDIGNEYISRQPNHDQPFYADQGTIKLNIISNTAQVAELEIQQTFAIPISA 640 (923)
T ss_dssp EEETTTCCEEE---EESEEEEE-------ECCSCSSCCCCCTTCCCEEGGGSEEEEEEEEECSSEEEEEEEEEEEEESSB
T ss_pred EEECCCCEEEE---EEEEEEEC-------CCCCCEEEEECCCCCCEEECCCCCCEEEEEECCCCEEEEEEEEEECCCCCC
T ss_conf 99978993988---88999605-------998870688768887303316787469999868877999999986377430
Q ss_pred ----------------------C-----EEEEEEEEECCCCEEEEEEEECCEECCCCCCCEEEEEEEECCCCCCEEEECC
Q ss_conf ----------------------4-----4999999946998189999994310258999489999974078897699706
Q 002542 693 ----------------------E-----WIYQVTRLYKGKEHVEVEFIVGPIPVDDGLGKEVVTHITSTLETNKTFYTDS 745 (910)
Q Consensus 693 ----------------------~-----~i~~~vrL~~~~~~ie~e~~v~~i~~~~~~~~ei~~~f~t~i~s~~~fytDs 745 (910)
+ +++|+++||+++++|||+++|+++ ..+|+++++|+|+|.++..+| |
T Consensus 641 ~~~L~~~~~~~~~~~~r~~~~s~~~~~~~i~q~i~L~~~~~~ie~~~~vd~~----~~~~~l~v~fpt~i~s~~~~~-d- 714 (923)
T 2wyh_A 641 DKLLQAEMEAVIDITERQARRSQEKAELTLTTLIRMEKNNPRLQFTTRFDNQ----MTNHRLRVLFPTHLKTDHHLA-D- 714 (923)
T ss_dssp CTHHHHHHHTTCCGGGCCCCBCSCEEEEEEEEEEEEETTCSCEEEEEEEEEC----CCSEEEEEEEECCCCCSEEEE-E-
T ss_pred HHHHCCCCCCCCCHHHHHHCCCCCCCCEEEEEEEEEECCCCEEEEEEEECCC----CCCEEEEEEECCCCCCCCEEE-E-
T ss_conf 1221011112220133442346666645899999992899658999998873----389899999015537897799-4-
Q ss_pred CCCCEEECCCCCCC-CCCCCCCCCCCCCEEEEEEEEEEEECCCCEEEEECCCCCEEEC-CCCEEEEEEECCC--CCCCCC
Q ss_conf 88811110245678-8655578764420686001699995773149983046632202-2776899992024--678985
Q 002542 746 NGRDFIKRIRDYRT-DWDLEVNEPVAGNYYPINLGIYMQDVKKEFSLLVDRALGGSSI-VDGEVELMLHRRL--LLDDSR 821 (910)
Q Consensus 746 ng~~~ikR~~~~r~-~w~~~~~~pv~~NyYPv~s~i~i~D~~~~ltvltdr~~G~ssl-~~G~ielmL~Rr~--~~dD~r 821 (910)
||||+++|+++.++ +|+. ++||||+++||+|+|.+.|+||+||+++|++++ .+|+|+|||||++ +.| +
T Consensus 715 ~~fg~i~R~~~~~~~~w~~------a~~~~p~~~~v~l~d~~~gvavlnd~~~g~~~~~~~~~i~LtLlRs~~~lg~--~ 786 (923)
T 2wyh_A 715 SIFETVKRPNHPDATFWKN------PSNPQHQECFVSLFDGENGVTIGNYGLNEYEILPDTNTIAITLLRSVGEMGD--W 786 (923)
T ss_dssp ETTEEEEEESSCCTTTCCC------SCCCEECSSEEEEECSSEEEEEEESSCCEEEEETTTTEEEEEEEEECSBCCT--T
T ss_pred CCCEEEECCCCCCCCCCCC------CCCEEEEEEEEEEECCCCCEEEEECCCCCEEEECCCCEEEEEEECCCCCCCC--C
T ss_conf 5863898268787777656------6641742239999879876899858965368866898499998136532366--7
Q ss_pred CCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCCH---HCCCCHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 7111235564434566782898599999602787520---1121002330796144202578865677754335787898
Q 002542 822 GVAEALNETDCVLDECKGLTIQGKYYFRIDTIGDGAK---WRRTFGQEIYSPPLLAFTEEDGDSWRNSHVTTFSGIDSSY 898 (910)
Q Consensus 822 Gvge~l~e~~~~~~~~~g~~~~~~~~l~~~~~~~~~~---~~r~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 898 (910)
|+ +|..|.++ +|+|.+.+.-...... .-++.+.+++.|++.+...... ......++.+..
T Consensus 787 G~-~p~p~a~~----------~G~h~f~yal~~~~g~~~~~~~~~a~~~~~Pl~~~~~~~~~----~~~~~~~s~l~~-- 849 (923)
T 2wyh_A 787 GY-FPTPEAQC----------LGKHSLSYSFESITKQTQFASYWRAQEGQVPVITTQTNQHE----GTLAAEYSYLTG-- 849 (923)
T ss_dssp SC-CBCGGGGC----------CEEEEEEEEEEEEETTTHHHHHHHHHHTTSCCEEEECCSCC----CSBCSEEESCBC--
T ss_pred CC-CCCCHHHH----------CEEEEEEEEECCCCCCHHHHHHHHHHHHHCCHHHEECCCCC----CCCCCCCCCEEC--
T ss_conf 76-36833574----------12799999971168864688999999873877513347665----767766653022--
Q ss_pred CCCCCCEEECCC
Q ss_conf 999652152159
Q 002542 899 SLPDNVAIITLQ 910 (910)
Q Consensus 899 ~lp~~vhlltl~ 910 (910)
-|+||+|.|||
T Consensus 850 -~~~~v~l~alK 860 (923)
T 2wyh_A 850 -TNDQVALTAFK 860 (923)
T ss_dssp -CCTTEEEEEEE
T ss_pred -CCCCEEEEEEE
T ss_conf -89978999988
No 3
>3lvt_A Glycosyl hydrolase, family 38; PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.55A {Enterococcus faecalis}
Probab=1.00 E-value=1 Score=1038.89 Aligned_cols=727 Identities=17% Similarity=0.180 Sum_probs=577.9
Q ss_pred CCCEEEEEEECCCCCCCCCHHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEC-HHHHHHHHHHCCHHHHHH
Q ss_conf 9804999992647788620323311434777622477999999999998719998199941-357999997219899999
Q 002542 37 PGKLNVHLVAHTHDDVGWLKTVDQYYVGSNNSIQGACVQNVLDSVIPELLADKNRKFIYVE-QAFFQRWWDEQSEAMQHE 115 (910)
Q Consensus 37 ~~~~~VhlvpHSH~D~gWl~t~d~y~~~~~~~~~~~~v~~il~~vi~~L~~~p~~kF~~~e-~~~~~~ww~~~~p~~~~~ 115 (910)
+.+++||+|||||||+|||||+++|+ .++.+++++|++.|+++|++||++.+ +.++.+||.+++|+.+++
T Consensus 4 m~~~~v~~v~HsH~D~~Wl~t~~e~~---------~~~~~~~~~~l~~l~~~p~~~f~~~~~q~~~~~~~~~~~p~~~~~ 74 (899)
T 3lvt_A 4 MTKKKVYIVSHSHWDREWYLPYEEHH---------MRLIELVDNVLDLIENDPEFNSFHLDGQTIILDDYLQVRPEKKEA 74 (899)
T ss_dssp CCCEEEEEEEEECC----CCCHHHHH---------HHHHHHHHHHHHHHHHCTTCCCEECTTBTHHHHHHHHHCGGGHHH
T ss_pred CCCCEEEEECCCCCCHHHCCCHHHHH---------HHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCHHHHHH
T ss_conf 54650999797778857657199999---------999999999999998699952899804199999998639999999
Q ss_pred HHHHHHCCCEEEECCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHCCCCEEEEE
Q ss_conf 99999589689982013120135789699999999799999988099983116628998984558998531399478882
Q 002542 116 VKQLVGSGQLEFINGGMCMHDEAVTHYIDMIDQTTLGHRFIKNEFGVTPRIGWQIDPFGHSAVQAYLLGSEVGFDSFFYG 195 (910)
Q Consensus 116 vk~LV~~GrlE~v~Ggwv~~Dea~~~~es~I~ql~~G~~~l~~~fG~~p~vgw~iD~FGhs~~~p~ll~~~~G~~~~~~~ 195 (910)
||+||++|||| |||||||+||+++|+||+||||++||+|+++ ||++|++||+|||||||+++|||| +++||++++|+
T Consensus 75 vk~lv~~Gr~e-igg~~v~~D~~~~~~es~irq~~~G~~~~~~-fG~~~~~~w~~D~FG~s~~lp~i~-~~~Gi~~~~~~ 151 (899)
T 3lvt_A 75 VKKAVQAGKLK-IGPFYILQDDFLISSESNVRNMLIGHLESQK-WGAPVQLGYFPDTFGNMGQTPQMM-QLANLPAAAFG 151 (899)
T ss_dssp HHHHHHTTSEE-CCSBSSCCCGGGSCHHHHHHHHHHHHHHHHH-HTCCCCCEEESCCCT---THHHHH-HTTTCCEEEEC
T ss_pred HHHHHHCCCEE-ECCHHCCCCCCCCCHHHHHHHHHHHHHHHHH-CCCCCCEEEECCCCCCCHHHHHHH-HHCCCCEEEEE
T ss_conf 99999849889-7741202655579989999999999999997-399986237278998736799999-97699749993
Q ss_pred CCC----HHHHHHH--CCCCCEEEEEECCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 236----5657632--0278405999608999998702776389998899998643247888862268211135489999
Q 002542 196 RID----YQDRAKR--KNEKSLEVVWQGSRSLGSSAQIFAGAFPENYEPPPGGFYFEVNDKYPIIQDNIKLFDYNVQDRV 269 (910)
Q Consensus 196 R~~----~~~k~~~--~~~~~~eF~W~g~d~~~~gs~I~t~~~~~~Y~~p~~~f~f~~~~~~~~~~d~~~~~~~nv~~~~ 269 (910)
|++ |+.+... -..+.++|+|+|+| |++||||++|++|+++ ... | ...++++.++
T Consensus 152 Rg~~~~~~~~~k~~~~~~~p~~~F~W~g~d----Gs~vlt~~~~~~Y~~g-~~~---------p------~~~~~~~~~~ 211 (899)
T 3lvt_A 152 RGVKPIGFDNQVLESDYSSQYSEMWWEGPD----QTKIFGLLFANWYSNG-NEI---------P------SEKEAAIAFW 211 (899)
T ss_dssp ---------------------CEEEEECTT----SCEEEEEECCCC-----CCS---------C------SSHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEEECCC----CCEEEEEECCCCCCCC-CCC---------C------CCHHHHHHHH
T ss_conf 344544444312211247877469997799----9849999777767676-679---------8------7689999999
Q ss_pred HHHHHHHHHHHCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHC-CCCEEEEECCHHHHHHHHHHCC-CCCCCCCC
Q ss_conf 999999998500058983899605787653147889989999999841-7974899849343799988269-99998677
Q 002542 270 NDFVAAAISQANITRTNHIMWTMGTDFKYQYARTWFRQLDKFIHYVNM-DGRVNALYSTPSIYTDAKYASN-ESWPLKTD 347 (910)
Q Consensus 270 ~~~~~~~~~~~~~~~t~~il~~~G~Df~y~~a~~~f~n~~~li~~~N~-~~~~~i~~sT~~~Yf~a~~~~~-~~lp~~~g 347 (910)
+.+++.+++ .++++++|+|+|+|+.+. +++|+++|+++|+ .+.+++++||+++||++++++. ..||+++|
T Consensus 212 ~~~~~~~~~---~~~t~~il~~~G~D~~p~-----~~~l~~~i~~~n~~~p~~~~~~st~~~yf~~l~~~~~~~lp~~~G 283 (899)
T 3lvt_A 212 KQKLADVER---YASTNHLLMMNGVDHQPV-----QRDITKAIALANELFPEYEFIHSNFDDYLKAVQEELPEDLGTVTG 283 (899)
T ss_dssp HHHHHHHHH---HCSSSEEEEEEEEC-----------CHHHHHHHHHHHCSSEEEEECCHHHHHHHHHHTCC--CCEEEC
T ss_pred HHHHHHHHH---HCCCCEEEEEECCCCCCH-----HHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHCCCCCCCCCC
T ss_conf 999998875---068871899546899960-----788999999997309985499769999999998752233772456
Q ss_pred CCC-CCCCCCCCCCC-EEEECCHHHHHHHHHHHHHHH-HHHHHHHHH---CCCCCCCCHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 884-35534788522-032030357899999879999-999888751---667899745899999997613565457760
Q 002542 348 DFF-PYADRAHAYWT-GYFSSRPALKRYVKVMSGYYL-AARQLEFYI---GRSETGHNTDSLADALAIAQHHDAVTGTEK 421 (910)
Q Consensus 348 Dff-py~~~~~~yWt-G~yTSR~~~K~~~R~~e~~L~-~ae~l~~l~---~~~~~~~~~~~l~~~l~~~QhHDaItGTs~ 421 (910)
||+ +|+++ .||+ |||||||++|++||++|++|+ +||+|++++ +..|+...++++|++|+++||||+||||++
T Consensus 284 El~~~~~~G--~yt~~~~~sSr~~~K~~nR~~E~~L~~~aE~l~~la~~~g~~yp~~~l~~~Wk~ll~~Q~HD~i~Gtsi 361 (899)
T 3lvt_A 284 ELTSQETDG--WYTLANTSSARVYLKQWNTKVQRQLENIAEPLAAMAYEVTGDYPHDQFDYAWKTLLQNHPHDSICGCSV 361 (899)
T ss_dssp CC-------------CGGGGBTHHHHHHHHHHHHHHHTTHHHHHHHHHHHHSCCCHHHHHHHHHHHHTTCSTTTTTSCSC
T ss_pred CCCCCCCCC--EEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 514644586--279778231279999999999999999999999999973788857999999999846378876677586
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCE
Q ss_conf 33489999999999999999999999986259999998988855212466554457886434579962899999399914
Q 002542 422 QHVANDYAKRLAIGYTEAEEVVATALACLVDSPSDNGCGRSTTRFQQCPLLNISYCPASEIDFSNGKNLVIVIYNSLGWK 501 (910)
Q Consensus 422 ~~V~~dy~~rl~~a~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~ln~s~c~~~~~~~~~~~~~~v~v~Npl~~~ 501 (910)
++|++||..+|.++...++.+++.+++.|+..... +. . +.+...++|||||+|+
T Consensus 362 ~~V~~d~~~~~~~~~~~~~~l~~~al~~l~~~~~~--------------------~~-----~-~~~~~~v~vfN~l~~~ 415 (899)
T 3lvt_A 362 DEVHRGMMTRFENANDVGHFLADEATRQLTEAIDT--------------------SV-----F-PEKAHPFVLFNTSGYQ 415 (899)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTBCC--------------------TT-----S-CTTCEEEEEEECSSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--------------------CC-----C-CCCCCEEEEEECCCCE
T ss_conf 79999999999999999999999999999851566--------------------66-----7-7788779999299960
Q ss_pred EEEEEEEEEEC----------------------CCEEEECCCCCEEEEEEECCCCCCCC-HHHHHHHHCCCCCCCCCCCE
Q ss_conf 86999999855----------------------83899926996786898189842220-01335432059999999937
Q 002542 502 REDIIRIPVAN----------------------GDVTVFNSEGKIIESQLVPPADAFMD-LRDYYVRAYLGRNPMVPPKY 558 (910)
Q Consensus 502 r~~~V~i~v~~----------------------~~~~V~d~~G~~V~~Qi~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 558 (910)
|+++|++++.. +.+.|.|.+|++||+|+++....+.. ++...+ +.++....+
T Consensus 416 r~~~V~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~G~~v~~qv~~~~~~~~~~l~~~~~-----~~~~~~~~~ 490 (899)
T 3lvt_A 416 KTEVVTVEVEIERLPFYTGKPEDLYHELKQKATPDYQVIDPTGKAVASRIVKEDVRFGYDLPKDAF-----RQPYMAKYL 490 (899)
T ss_dssp EEEEEEEEEEEEEEEGGGSCHHHHHHHHHHSCCCCEEEECSSSCEECCEEEEEEEEEEECCC----------CEEEEEEE
T ss_pred EEEEEEEEEECCCCCCCCCCCHHHHHHHCCCCCCCEEEECCCCCEEEEEEEECCCCCCCCCCCCCC-----CCCCCCCEE
T ss_conf 326999998725443233451011000001367854999899999748995145421233565544-----554312148
Q ss_pred EEEEEE-ECCCCCEEEEEEEECCCCCCCCCCCCCEECCCCCCCCEEEECCEEEEEEECCCCCCEEEEECCCCCEEEEEEE
Q ss_conf 999974-2499943899999547899764334300013689971187035199999789998079992578613776445
Q 002542 559 WLAFPV-SVPPLGFSTYTISSVKRGGGHSIRSSIQTFESSDKSTVEVGQGNLKLIFSSDKSKPINYINNKSLVEESVEQS 637 (910)
Q Consensus 559 ~l~f~a-~iPplG~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ieN~~~~i~~d~~~G~l~si~dk~~g~~~~~~~~ 637 (910)
+|.|.+ +||||||++|.|.......... .+ ....+..+|||++|+|+|| .+|.| +|+||.+|+++. .
T Consensus 491 ~l~f~a~~vPalGy~~~~i~~~~~~~~~~---~~----~~~~~~~~leN~~~~v~~d-~~G~l-sl~Dk~~gre~~---~ 558 (899)
T 3lvt_A 491 TVELSVKEMAPFSWDSFALIQGETKAFEG---SL----LAQPATNEMENEFIQVKIE-NNGSL-TIADKKTGETFS---K 558 (899)
T ss_dssp EEEEEEEEECTTEEEEEEEEESCCCCCCS---CC----SEETTTTEEECSSEEEEEC-TTSCE-EEEETTTCCEEE---E
T ss_pred EEEEEECCCCCCCCEEEEEEECCCCCCCC---CC----CCCCCCCEEECCCEEEEEC-CCCCE-EEEECCCCEEEE---E
T ss_conf 99999467787777799998467666543---21----2356673774573899994-89848-999988990998---7
Q ss_pred EEEEECCCCCCCCCCCCCCCEEEECCCC-EEEECCC-CCEEEEE-ECCCEEEEEEEEC----------------------
Q ss_conf 7996237999999999986316805998-0463288-5009999-8153899999981----------------------
Q 002542 638 YSFYPAYNGTNDKAPQNAGAYIFRPNGT-FFIKSEG-QVPLTVM-RGPILDEVHQKIN---------------------- 692 (910)
Q Consensus 638 ~~~Y~~~~G~~~~~~~~sGAYiF~P~~~-~~~~~~~-~~~i~v~-~Gpl~~~v~~~~~---------------------- 692 (910)
+..|... | +.+++|+|+|... .++.... ...++++ +||++++|++.+.
T Consensus 559 ~~~~~d~-g------d~g~~Y~~~p~~~d~~~~~~~~~~~v~v~e~gpl~~~v~v~~~~~~P~~~~~~~~~~~~~~~~~~ 631 (899)
T 3lvt_A 559 LLTFEDT-G------DIGNEYIFFKPTEDQGITTENVTAEITNKENSPVKASYQIKQTVMLPVAADERLEEEQKAVREFR 631 (899)
T ss_dssp ETEEEEE-E------CCSBTTBCCCCTTCCCEESTTCCCEEEEEEECSSEEEEEEEEEEEEESSBCTHHHHHHHTTCCGG
T ss_pred EEEEECC-C------CCCCCEEECCCCCCCEEECCCCCCEEEEEECCCCEEEEEEEEEECCCCCHHHHHCCCCCCCCCCH
T ss_conf 7899537-8------87884365587678224446777339999758888999999998156431232100001111000
Q ss_pred ------C------EEEEEEEEECCCCEEEEEEEECCEECCCCCCCEEEEEEEECCCCCCEEEECCCCCCEEECCCCCCCC
Q ss_conf ------4------4999999946998189999994310258999489999974078897699706888111102456788
Q 002542 693 ------E------WIYQVTRLYKGKEHVEVEFIVGPIPVDDGLGKEVVTHITSTLETNKTFYTDSNGRDFIKRIRDYRTD 760 (910)
Q Consensus 693 ------~------~i~~~vrL~~~~~~ie~e~~v~~i~~~~~~~~ei~~~f~t~i~s~~~fytDsng~~~ikR~~~~r~~ 760 (910)
+ +++|+++|++++++|||+++|++. ..+|+++++|+++|.+...+|+ ++||+++|+++.+++
T Consensus 632 ~r~~~~S~~~~~~~i~q~i~L~~~~~~id~~~~Vdw~----~~~~~Lrv~Fp~~i~s~~~~~d--~~fG~i~Rpt~~~t~ 705 (899)
T 3lvt_A 632 ERLAQRSTTLRPFEITTMVTMIKESNQLFFETTINNQ----IKDHRLRVLFPTGMVTETHEAD--SIYEVVTRPNQVSDT 705 (899)
T ss_dssp GCCCCBCSCEEEEEEEEEEEEETTCCCEEEEEEEEEC----CCSEEEEEEECCSCCCSEEEEE--CSSSEEEEEC-----
T ss_pred HHHHCCCCCCCCEEEEEEEEEECCCCEEEEEEEECCC----CCCEEEEEECCCCCCCCCEEEE--CCCEEEECCCCCCCC
T ss_conf 1220456555516899999993799779999998787----5898999988787776855884--264699878999766
Q ss_pred CCCCCCCCCCCCEEEEEEEEEEEECCCCEEEEECCCCCEEECCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 65557876442068600169999577314998304663220227768999920246789857111235564434566782
Q 002542 761 WDLEVNEPVAGNYYPINLGIYMQDVKKEFSLLVDRALGGSSIVDGEVELMLHRRLLLDDSRGVAEALNETDCVLDECKGL 840 (910)
Q Consensus 761 w~~~~~~pv~~NyYPv~s~i~i~D~~~~ltvltdr~~G~ssl~~G~ielmL~Rr~~~dD~rGvge~l~e~~~~~~~~~g~ 840 (910)
|+ .++|+||+++||+|+|.+.|++|+||+++|++++.+|.|+|||+|+.-.--..|+- |--|. +|.|.
T Consensus 706 We------~a~~e~~~~~~vdlsd~~~Gvavlnd~~~gy~v~~d~~i~LTLlRs~g~lG~~g~~-p~Pda-----~~~G~ 773 (899)
T 3lvt_A 706 WE------NPTNPQHQQAFVNVHDQNKGVTIFNEGLNEYEVLADGTIAVTLIRCVGELGDWGYF-ATPEA-----QCQGE 773 (899)
T ss_dssp --------CCCCCEECSSEEEEECSSCEEEEEESSCCEEEECTTCCEEEEEEEECSBCCTTSCC-BCGGG-----GCCEE
T ss_pred CC------CCCCCEEEEEEEEEECCCCEEEEEECCCCCEEECCCCEEEEEEECCCCCCCCCCCC-CCCCH-----HHHCC
T ss_conf 65------78765310149998669824999968975435767987999984146765546775-89663-----65185
Q ss_pred EEEEEEEEEEECC-CCCCHHCCCCHHHHCCCCEEEE
Q ss_conf 8985999996027-8752011210023307961442
Q 002542 841 TIQGKYYFRIDTI-GDGAKWRRTFGQEIYSPPLLAF 875 (910)
Q Consensus 841 ~~~~~~~l~~~~~-~~~~~~~r~~~~~~~~p~~~~~ 875 (910)
-+-+|-|..-.- ...+.. -+.+.+++.|+..+.
T Consensus 774 -h~F~yal~ph~g~~~~~~~-~~~a~~~n~pl~~~~ 807 (899)
T 3lvt_A 774 -YTFKYGLSLHGKPEERFAT-YQQAYSAQIPFTAAT 807 (899)
T ss_dssp -EEEEEEEEEESSGGGHHHH-HHHHHHHTSCCEEEE
T ss_pred -EEEEEEEEECCCCCHHHHH-HHHHHHHCCCCCEEE
T ss_conf -6999999954797125489-999998649842244
No 4
>1o7d_A Lysosomal alpha-mannosidase; hydrolase, glycosyl hydrolase family 38; HET: NAG BMA MAN NDG; 2.70A {Bos taurus} SCOP: c.6.2.1
Probab=1.00 E-value=1 Score=627.92 Aligned_cols=294 Identities=50% Similarity=0.891 Sum_probs=283.3
Q ss_pred EEECCCCCCCCCCEEEEEEECCCCCCCCCHHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHH
Q ss_conf 57338999889804999992647788620323311434777622477999999999998719998199941357999997
Q 002542 27 RVYNTSQGIVPGKLNVHLVAHTHDDVGWLKTVDQYYVGSNNSIQGACVQNVLDSVIPELLADKNRKFIYVEQAFFQRWWD 106 (910)
Q Consensus 27 ~~~~~~~~~~~~~~~VhlvpHSH~D~gWl~t~d~y~~~~~~~~~~~~v~~il~~vi~~L~~~p~~kF~~~e~~~~~~ww~ 106 (910)
|+|++|+.+++++++||+|||||+|+||+||+++|++|+++.|+.+.++++++++++.|+++|++||+|+|+++|++||+
T Consensus 1 ~~~~~~~~~~~~~~~v~~v~HsH~D~gWl~t~~e~~~~~~~~i~~~~~~~~~~~vl~~l~~~p~~~F~~~e~~~~~~w~~ 80 (298)
T 1o7d_A 1 AGYKTCPKVKPDMLNVHLVPHTHDDVGWLKTVDQYFYGIYNNIQPAGVQYILDSVISSLLANPTRRFIYVEIAFFSRWWR 80 (298)
T ss_dssp -CCTTCCCCCSSSEEEEEEEBCBCCSSSSSCHHHHHHTCCTTTCCCCHHHHHHHHHHHHHHCTTCCEEECCHHHHHHHHH
T ss_pred CCCCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHH
T ss_conf 98767887788752799957788851334549886016430367899999999999999878997699965167699999
Q ss_pred HCCHHHHHHHHHHHHCCCEEEECCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCC--CCEEEECCCCCCCHHHHHHHH
Q ss_conf 219899999999995896899820131201357896999999997999999880999--831166289989845589985
Q 002542 107 EQSEAMQHEVKQLVGSGQLEFINGGMCMHDEAVTHYIDMIDQTTLGHRFIKNEFGVT--PRIGWQIDPFGHSAVQAYLLG 184 (910)
Q Consensus 107 ~~~p~~~~~vk~LV~~GrlE~v~Ggwv~~Dea~~~~es~I~ql~~G~~~l~~~fG~~--p~vgw~iD~FGhs~~~p~ll~ 184 (910)
+++|+.+++||+||++|||||+||||||+|||++++||+||||++|++|++++||+. |++||+|||||||+++|+||
T Consensus 81 ~~~Pe~~~~vk~lV~~Grle~vgG~wve~D~~~~~~eslirQl~~G~~~~~~~fG~~~~~~~~W~pD~FG~s~~lP~il- 159 (298)
T 1o7d_A 81 QQTNATQKIVRELVRQGRLEFANGGWVMNDEATTHYGAIIDQMTLGLRFLEETFGSDGRPRVAWHIDPFGHSREQASLF- 159 (298)
T ss_dssp TSCHHHHHHHHHHHHTTSEEESSCSSSCBCSSSCCHHHHHHHHHHHHHHHHHHHGGGGCCSEEEESSSSSCCHHHHHHH-
T ss_pred HCCHHHHHHHHHHHHCCCEEEECCEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHH-
T ss_conf 6599999999999977988997853213345789989999999999999999849987886468478998667899999-
Q ss_pred HHCCCCEEEEECCCHHHHHHHCCCCCEEEEEECCCCCC-CCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 31399478882236565763202784059996089999-98702776389998899998643247888862268211135
Q 002542 185 SEVGFDSFFYGRIDYQDRAKRKNEKSLEVVWQGSRSLG-SSAQIFAGAFPENYEPPPGGFYFEVNDKYPIIQDNIKLFDY 263 (910)
Q Consensus 185 ~~~G~~~~~~~R~~~~~k~~~~~~~~~eF~W~g~d~~~-~gs~I~t~~~~~~Y~~p~~~f~f~~~~~~~~~~d~~~~~~~ 263 (910)
+++||++++++|++|++++.+...+.+||+|+|+++++ +|++||||++|++|++| .+||||..|.++|++++|.+.++
T Consensus 160 ~~~Gi~~~~~~R~~~~~~~~~~~~~~~eF~W~g~~~~~~dgs~i~t~~~~~~Y~~~-~g~~fd~~~~~~p~~~~~~~~~~ 238 (298)
T 1o7d_A 160 AQMGFDGFFFGRLDYQDKKVRKKTLQMEQVWRASTSLKPPTADLFTSVLPNMYNPP-EGLCWDMLCADKPVVEDTRSPEY 238 (298)
T ss_dssp HHHTCCEEEESCCCHHHHHHHHHTTCSEEEEECCSSSCTTTTEEEEEECSSTTSCC-TTCCCSTTCCCCCCCCCTTSTTC
T ss_pred HHCCCCEEEEEECCCCCCCCCCCCCCCEEEEECCCCCCCCCCEEEEEEECCCCCCC-CCCCCCCCCCCCCCCCCCCCHHH
T ss_conf 97599869998334000000145788338987898878999968999727887898-87623456677674677411477
Q ss_pred CHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEE
Q ss_conf 48999999999999850005898389960578765314788998999999984179748
Q 002542 264 NVQDRVNDFVAAAISQANITRTNHIMWTMGTDFKYQYARTWFRQLDKFIHYVNMDGRVN 322 (910)
Q Consensus 264 nv~~~~~~~~~~~~~~~~~~~t~~il~~~G~Df~y~~a~~~f~n~~~li~~~N~~~~~~ 322 (910)
|+++|++.|+++++++++.|+|++||+|+|+||+|.+|.+||.||++||+++|++..++
T Consensus 239 nv~~r~~~~~~~~~~~a~~~~t~~vl~p~G~Df~~~~a~~~f~n~~~li~~iN~~~~~~ 297 (298)
T 1o7d_A 239 NAKELVRYFLKLATDQGKLYRTKHTVMTMGSDFQYENANTWFKNLDKLIQLVNAQQRAN 297 (298)
T ss_dssp CHHHHHHHHHHHHHHHHTTSSSSEEEEEECCBTCCTTHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 99999999999999987505788377226788786406689988999999996067568
No 5
>1o7d_D Lysosomal alpha-mannosidase; hydrolase, glycosyl hydrolase family 38; HET: NAG BMA MAN NDG; 2.70A {Bos taurus} SCOP: b.30.5.6
Probab=1.00 E-value=1 Score=520.03 Aligned_cols=273 Identities=38% Similarity=0.665 Sum_probs=256.7
Q ss_pred CEEEECCEEEEEEECCCCCCEEEEECCCCCEEEEEEEEEEEECCCCCCCCCCCCCCCEEEECCCCEEEECCCCCEEEEEE
Q ss_conf 11870351999997899980799925786137764457996237999999999986316805998046328850099998
Q 002542 601 TVEVGQGNLKLIFSSDKSKPINYINNKSLVEESVEQSYSFYPAYNGTNDKAPQNAGAYIFRPNGTFFIKSEGQVPLTVMR 680 (910)
Q Consensus 601 ~~~ieN~~~~i~~d~~~G~l~si~dk~~g~~~~~~~~~~~Y~~~~G~~~~~~~~sGAYiF~P~~~~~~~~~~~~~i~v~~ 680 (910)
.+.|+|++++++||+.+|.|++++++++|.+..+.++|.+|.+..|+ +.+++.||||+|+|++.++.++...+.+.+++
T Consensus 2 ~~~i~n~~~~l~fd~~tG~L~si~~~~~g~~~~v~q~f~~Y~s~~g~-~~~~~~SGAYiFrP~g~~~~~~~~~~~~~v~~ 80 (282)
T 1o7d_D 2 DLVIQNEYLRARFDPNTGLLMELENLEQNLLLPVRQAFYWYNASTGN-NLSSQASGAYIFRPNQNKPLFVSHWAQTHLVK 80 (282)
T ss_dssp CCEEECSSEEEEECTTTCSEEEEEEC---CEEECEEEEEEEEBCCCB-TTBSCCCCSSCCCBSSSSCEESCSCCEEEEEE
T ss_pred CEEECCCEEEEEECCCCCCEEEEEECCCCEEEEEEEEEEEEECCCCC-CCCCCCCCEEEECCCCCCCCCCCCCCEEEEEE
T ss_conf 57870765999988999868999986788088776789999534688-87788872689657998774337884799997
Q ss_pred CCCEEEEEEEECCEEEEEEEEECCCCEEEEEEEECCEECCCCCCCEEEEEEEECCCCCCEEEECCCCCCEEECCCCCCCC
Q ss_conf 15389999998144999999946998189999994310258999489999974078897699706888111102456788
Q 002542 681 GPILDEVHQKINEWIYQVTRLYKGKEHVEVEFIVGPIPVDDGLGKEVVTHITSTLETNKTFYTDSNGRDFIKRIRDYRTD 760 (910)
Q Consensus 681 Gpl~~~v~~~~~~~i~~~vrL~~~~~~ie~e~~v~~i~~~~~~~~ei~~~f~t~i~s~~~fytDsng~~~ikR~~~~r~~ 760 (910)
||++++|++.++.|++|++|||++..++|++|+|+|||++++.|+|+++||.|+|+|+++||||+||++|+||.+++|++
T Consensus 81 G~lv~eV~~~~~~~~sq~~Rly~~~~~vE~e~~Vgpipi~d~~~kEiv~r~~T~i~s~~~FYTDsNG~e~~kR~~~~r~~ 160 (282)
T 1o7d_D 81 ASLVQEVHQNFSAWCSQVVRLYPRQRHLELEWTVGPIPVGDGWGKEVISRFDTALATRGLFYTDSNGREILERRRNYRPT 160 (282)
T ss_dssp CSSCEEEEEEEETTEEEEEEECTTCSSEEEEEEECCCCCTTSCCEEEEEEEECCCCCTTEEEEESTTSSEEEEETTCCSS
T ss_pred CCEEEEEEEEECCCEEEEEEEECCCCEEEEEEEECCCCCCCCCCCEEEEEEEEEECCCCEEEECCCCCEEEEEEECCCCC
T ss_conf 98999999997896899999936895389999985511368888489999985515699688978980305788245656
Q ss_pred CCCCCCCCCCCCEEEEEEEEEEEECCCCEEEEECCCCCEEECCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 65557876442068600169999577314998304663220227768999920246789857111235564434566782
Q 002542 761 WDLEVNEPVAGNYYPINLGIYMQDVKKEFSLLVDRALGGSSIVDGEVELMLHRRLLLDDSRGVAEALNETDCVLDECKGL 840 (910)
Q Consensus 761 w~~~~~~pv~~NyYPv~s~i~i~D~~~~ltvltdr~~G~ssl~~G~ielmL~Rr~~~dD~rGvge~l~e~~~~~~~~~g~ 840 (910)
|+++.++|++||||||+++|+|+|.+.+|+|++||++||||+++|+||||||||+++||+|||||||||+ ++|+
T Consensus 161 ~~~~~~~pv~gNYYPv~s~~~IqD~~~rltvl~drs~G~sSl~~G~lElMlhRRl~~DD~rGvge~l~d~------~~gl 234 (282)
T 1o7d_D 161 WKLNQTEPVAGNYYPVNSRIYITDGNMQLTVLTDRSQGGSSLRDGSLELMVHRRLLKDDARGVGEPLNKE------GSGL 234 (282)
T ss_dssp SCCCCSCTTGGGCEEESSEEEEECSSEEEEEEESSCEEECCSSTTEEEEEEEEECSSCCSSSCCSCSCCC------GGGG
T ss_pred CCCCCCCCCCCCEEEEEEEEEEECCCEEEEEEECCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCC------CCCE
T ss_conf 5434356765636500127999828828999963356330068975999986340446632115443455------8880
Q ss_pred EEEEEEEEEEECCCCCCHHCCCCHHHHCCCCEEEEECCCC
Q ss_conf 8985999996027875201121002330796144202578
Q 002542 841 TIQGKYYFRIDTIGDGAKWRRTFGQEIYSPPLLAFTEEDG 880 (910)
Q Consensus 841 ~~~~~~~l~~~~~~~~~~~~r~~~~~~~~p~~~~~~~~~~ 880 (910)
+++|+|||+|++...++..+|.+++++.+||+++|+..+.
T Consensus 235 ~v~g~~~l~l~~~~~~~~~~r~~~~~~~~p~~~~fs~~~~ 274 (282)
T 1o7d_D 235 WVRGRHLVLLDKKETAAARHRLQAEMEVLAPQVVLAQGGG 274 (282)
T ss_dssp SEEEEEEEEEEEHHHHHHHHHHHHHHHHSCCEEEEEEC--
T ss_pred EEEEEEEEEEECCCCCHHHHHHHHHHHHCCHHHHEECCCC
T ss_conf 8889999998086432134347888664850620104787
No 6
>1o7d_C Lysosomal alpha-mannosidase; hydrolase, glycosyl hydrolase family 38; HET: NAG BMA MAN NDG; 2.70A {Bos taurus} SCOP: a.8.3.1 b.30.5.6
Probab=1.00 E-value=1 Score=235.40 Aligned_cols=150 Identities=38% Similarity=0.650 Sum_probs=133.6
Q ss_pred CHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 45899999997613565457760334899999999999999999999999862599999989888552124665544578
Q 002542 399 NTDSLADALAIAQHHDAVTGTEKQHVANDYAKRLAIGYTEAEEVVATALACLVDSPSDNGCGRSTTRFQQCPLLNISYCP 478 (910)
Q Consensus 399 ~~~~l~~~l~~~QhHDaItGTs~~~V~~dy~~rl~~a~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~ln~s~c~ 478 (910)
.++++||+|+++||||+||||++++|++||..||.+++..++.+++.+++.|+... .+|..|.++|++.|+
T Consensus 2 ~L~~~~k~l~~~QhHDaItGts~~~V~~Dy~~rl~~~~~~~~~l~~~~l~~L~~~~---------~~~~~~~~ln~~~~~ 72 (159)
T 1o7d_C 2 DSAPLNEAMAVLQHHDAVSGTSRQHVANDYARQLSEGWRPCEVLMSNALAHLSGLK---------EDFAFCRKLNISICP 72 (159)
T ss_dssp CSHHHHHHHHHTTBTTTTTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---------SCEECCTTGGGTCCH
T ss_pred HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---------CCCCCCCCCCCCCCC
T ss_conf 28999998747255776775575799999999999999999999999999985486---------544423433333176
Q ss_pred CCCCCCCCCCEEEEEEECCCCCEEEEEEEEEEECCCEEEECCCCCEEEEEEECCCCCCCCHHHHHHHHCCCCCCCCCCCE
Q ss_conf 86434579962899999399914869999998558389992699678689818984222001335432059999999937
Q 002542 479 ASEIDFSNGKNLVIVIYNSLGWKREDIIRIPVANGDVTVFNSEGKIIESQLVPPADAFMDLRDYYVRAYLGRNPMVPPKY 558 (910)
Q Consensus 479 ~~~~~~~~~~~~~v~v~Npl~~~r~~~V~i~v~~~~~~V~d~~G~~V~~Qi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 558 (910)
.++. ++...++|||||+|+|+++|+++|+.+.+.|+|.+|++|++|+.+.+.. ..+
T Consensus 73 ~~~~----~~~~~vvvfN~l~~~r~~~V~v~v~~~~~~v~d~~G~~v~~qi~~~~~~--------------------~~~ 128 (159)
T 1o7d_C 73 LTQT----AERFQVIVYNPLGRKVDWMVRLPVSKHVYLVKDPGGKIVPSDVVTIPSS--------------------DSQ 128 (159)
T ss_dssp HHHH----CSEEEEEEEECSSSCEEEEEEEEECSSCEEEECSSSCEECCEEEEETTT--------------------TEE
T ss_pred CCCC----CCCEEEEEECCCCCEEEEEEEEEECCCCEEEECCCCCEEEEEEEECCCC--------------------CCE
T ss_conf 6567----7647999998998617479999986886899959979953699965688--------------------844
Q ss_pred EEEEEEECCCCCEEEEEEEECCC
Q ss_conf 99997424999438999995478
Q 002542 559 WLAFPVSVPPLGFSTYTISSVKR 581 (910)
Q Consensus 559 ~l~f~a~iPplG~~~y~i~~~~~ 581 (910)
+|.|.++||||||++|+|..++.
T Consensus 129 ~l~f~a~vP~lG~~ty~i~~~~~ 151 (159)
T 1o7d_C 129 ELLFSALVPAVGFSIYSVSQMPN 151 (159)
T ss_dssp EEEEEEEECTTEEEEEEEEECC-
T ss_pred EEEEEEECCCCEEEEEEEEECCC
T ss_conf 99999640886418999997899
No 7
>1k1x_A 4-alpha-glucanotransferase; 2.40A {Thermococcus litoralis} SCOP: a.8.3.2 b.30.5.8 c.6.2.2 PDB: 1k1w_A 1k1y_A*
Probab=1.00 E-value=1 Score=176.78 Aligned_cols=251 Identities=15% Similarity=0.168 Sum_probs=170.4
Q ss_pred CCEEEEEEECCCCCCC-CCHHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHCCHHHHHHH
Q ss_conf 8049999926477886-203233114347776224779999999999987199981999413579999972198999999
Q 002542 38 GKLNVHLVAHTHDDVG-WLKTVDQYYVGSNNSIQGACVQNVLDSVIPELLADKNRKFIYVEQAFFQRWWDEQSEAMQHEV 116 (910)
Q Consensus 38 ~~~~VhlvpHSH~D~g-Wl~t~d~y~~~~~~~~~~~~v~~il~~vi~~L~~~p~~kF~~~e~~~~~~ww~~~~p~~~~~v 116 (910)
++..|.+|.|+|.|.+ |.|.+++ .+...+..+++.|+++|++||...-...+..|+++.+|+..+++
T Consensus 2 ~~~~l~lv~H~HqP~~~~~~~~e~------------a~~~~Y~pll~ll~~~~~~k~~~~~s~~ll~~l~~~~p~l~~~i 69 (659)
T 1k1x_A 2 ERINFIFGIHNHQPLGNFGWVFEE------------AYNRSYRPFMEILEEFPEMKVNVHFSGPLLEWIEENKPDYLDLL 69 (659)
T ss_dssp CCEEEEEEEEECCCTTCCHHHHHH------------HHHHTHHHHHHHHTTCTTCCEEEEECHHHHHHHHHHCHHHHHHH
T ss_pred CCEEEEEEEECCCCCCCCCHHHHH------------HHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCHHHHHHH
T ss_conf 836999999821798667078999------------99999999999998587957999866999999998797999999
Q ss_pred HHHHHCCCEEEECCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHCCCCEEEEEC
Q ss_conf 99995896899820131201357896999999997999999880999831166289989845589985313994788822
Q 002542 117 KQLVGSGQLEFINGGMCMHDEAVTHYIDMIDQTTLGHRFIKNEFGVTPRIGWQIDPFGHSAVQAYLLGSEVGFDSFFYGR 196 (910)
Q Consensus 117 k~LV~~GrlE~v~Ggwv~~Dea~~~~es~I~ql~~G~~~l~~~fG~~p~vgw~iD~FGhs~~~p~ll~~~~G~~~~~~~R 196 (910)
|+++++||+|++||+|+.++..+++.|++++|+.+|.++++ .||.+|+..|.||. ++++.+|+++ +++||+++++.-
T Consensus 70 k~l~~~G~vE~l~~~~~Hpi~~l~p~e~~~~QI~~g~~~~~-~FG~~P~G~WlPE~-~ys~~l~~iL-~~~Gi~y~~td~ 146 (659)
T 1k1x_A 70 RSLIKRGQLEIVVAGFYEPVLAAIPKEDRLVQIEMLKDYAR-KLGYDAKGVWLTER-VWQPELVKSL-REAGIEYVVVDD 146 (659)
T ss_dssp HHHHHTTCEEEEBCCTTCCCGGGSCHHHHHHHHHHHHHHHH-HTTCCCCEEECGGG-CBCTTHHHHH-HHTTCCEEEEEH
T ss_pred HHHHHCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHH-HCCCCCCEEECCCC-CCCHHHHHHH-HHCCCCEEEECC
T ss_conf 99998799999836740001458999999999999999999-74997888987623-5676699999-986993999873
Q ss_pred CCHHHHHHHCCCCCEEEEEECCCCCCCCCEEEEEECCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 36565763202784059996089999987027763899--9889999864324788886226821113548999999999
Q 002542 197 IDYQDRAKRKNEKSLEVVWQGSRSLGSSAQIFAGAFPE--NYEPPPGGFYFEVNDKYPIIQDNIKLFDYNVQDRVNDFVA 274 (910)
Q Consensus 197 ~~~~~k~~~~~~~~~eF~W~g~d~~~~gs~I~t~~~~~--~Y~~p~~~f~f~~~~~~~~~~d~~~~~~~nv~~~~~~~~~ 274 (910)
.+...-...+...-..++... . |..|-...-.. ++..| +. .++.+++
T Consensus 147 ~~~~~~~~~p~~~~~py~~~~-~----g~~i~vf~rd~~Lsd~i~-----------------------f~---~a~~~~~ 195 (659)
T 1k1x_A 147 YHFMSAGLSKEELFWPYYTED-G----GEVITVFPIDEKLRYLIP-----------------------FR---PVKKTIE 195 (659)
T ss_dssp HHHHHHTCCGGGCSSCEEEEE-T----TEEEEEEEECHHHHHHTT-----------------------TS---CHHHHHH
T ss_pred HHHCCCCCCCHHCCCCEEECC-C----CCEEEEEEECCCCHHCCC-----------------------CC---CHHHHHH
T ss_conf 330568999310166468369-9----967999994475021047-----------------------75---1999999
Q ss_pred HHHHHHCCCCCCEEEEEE-CCCC-CCCCHHHHHH---HHHHHHHHHHCCCCEEEEECCHHHHHHHHH
Q ss_conf 999850005898389960-5787-6531478899---899999998417974899849343799988
Q 002542 275 AAISQANITRTNHIMWTM-GTDF-KYQYARTWFR---QLDKFIHYVNMDGRVNALYSTPSIYTDAKY 336 (910)
Q Consensus 275 ~~~~~~~~~~t~~il~~~-G~Df-~y~~a~~~f~---n~~~li~~~N~~~~~~i~~sT~~~Yf~a~~ 336 (910)
.+...........+.+++ |--| ++.+...|+. -+..+++.+.+.. .+++.||++|++...
T Consensus 196 ~L~~~~~~~~~~lV~i~~DgE~fGhw~~t~~w~~g~~fL~~l~~~l~~~~--~i~~~t~se~L~~~~ 260 (659)
T 1k1x_A 196 YLESLTSDDPSKVAVFHDDGEKFGVWPGTYEWVYEKGWLREFFDAITSNE--KINLMTYSEYLSKFT 260 (659)
T ss_dssp HHHTTCCSCTTCEEEEEEEGGGTTTSTTHHHHHTTTCHHHHHHHHHHHCT--TEEECCHHHHHHHCC
T ss_pred HHHHHHCCCCCCEEEEEECHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCC--CEEEECHHHHHHHCC
T ss_conf 99986357999889998488981988765586176999999999986389--979986999997589
No 8
>1o7d_B Lysosomal alpha-mannosidase; hydrolase, glycosyl hydrolase family 38; HET: NAG BMA MAN NDG; 2.70A {Bos taurus} SCOP: a.8.3.1 c.6.2.1
Probab=1.00 E-value=1 Score=164.82 Aligned_cols=74 Identities=53% Similarity=0.895 Sum_probs=70.9
Q ss_pred CEEEEECCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 74899849343799988269999986778843553478852203203035789999987999999988875166
Q 002542 320 RVNALYSTPSIYTDAKYASNESWPLKTDDFFPYADRAHAYWTGYFSSRPALKRYVKVMSGYYLAARQLEFYIGR 393 (910)
Q Consensus 320 ~~~i~~sT~~~Yf~a~~~~~~~lp~~~gDffpy~~~~~~yWtG~yTSR~~~K~~~R~~e~~L~~ae~l~~l~~~ 393 (910)
.++++||||+|||+++++.+..||+++||||||+|++|+||||||||||.+|+++|+++++|++||+|.++++.
T Consensus 2 ~v~v~ysT~s~Yf~al~~~~~~~p~~~~DFfpYad~~~~yWtGyyTSRp~lK~~~R~~~~~L~~ae~L~~la~~ 75 (84)
T 1o7d_B 2 RVNVLYSTPACYLWELNKANLSWSVKKDDFFPYADGPYMFWTGYFSSRPALKRYERLSYNFLQVCNQLEALAGP 75 (84)
T ss_dssp CEEEEECCHHHHHHHHHHTCCCBCEECSCCCSCCSBTTBCSCGGGTSCHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred EEEEEECCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 37899679999999999747888655877003567999750454207799999999979999999999998744
No 9
>3p0b_A TT1467 protein; glycoside hydrolase GH57, glycogen branching, transferase; 1.35A {Thermus thermophilus} PDB: 1ufa_A
Probab=1.00 E-value=1 Score=96.73 Aligned_cols=298 Identities=13% Similarity=0.080 Sum_probs=168.4
Q ss_pred HHHCCHHHHHHHHHHHHCCCEEEECCEEEEECCCCC-CHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCH------
Q ss_conf 972198999999999958968998201312013578-9699999999799999988099983116628998984------
Q 002542 105 WDEQSEAMQHEVKQLVGSGQLEFINGGMCMHDEAVT-HYIDMIDQTTLGHRFIKNEFGVTPRIGWQIDPFGHSA------ 177 (910)
Q Consensus 105 w~~~~p~~~~~vk~LV~~GrlE~v~Ggwv~~Dea~~-~~es~I~ql~~G~~~l~~~fG~~p~vgw~iD~FGhs~------ 177 (910)
|+...++....+|+|++.|++||+++++.-+-..+. ..|++..|+..|.+..++.||.+|+..|.|.. ++++
T Consensus 137 ~~~~~~dii~~fr~L~~~G~iEiit~~~tH~~lPLl~~~e~~~~QI~~g~~~~~~~FG~~P~G~WlpE~-ay~~~~~~~~ 215 (540)
T 3p0b_A 137 FQRLSGDLVAAFRKAEEGGQVELITSNATHGYSPLLGYDEALWAQIKTGVSTYRRHFAKDPTGFWLPEM-AYRPKGPWKP 215 (540)
T ss_dssp HHHTTTCHHHHHHHHHHHTSEEEEEECTTCBCGGGCSCHHHHHHHHHHHHHHHHHHHSSCCCBEECGGG-CBCCSEEECC
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEECCCC-CEECCCCCCC
T ss_conf 998667899999999987998997477355687647998999999999999999980999998989422-1307655555
Q ss_pred -----------HHHHHHHHHCCCCEEEEECCCHHHHHHHCCCCCEEEEEECCCC---------CCCCCEEEEEEC-----
Q ss_conf -----------5589985313994788822365657632027840599960899---------999870277638-----
Q 002542 178 -----------VQAYLLGSEVGFDSFFYGRIDYQDRAKRKNEKSLEVVWQGSRS---------LGSSAQIFAGAF----- 232 (910)
Q Consensus 178 -----------~~p~ll~~~~G~~~~~~~R~~~~~k~~~~~~~~~eF~W~g~d~---------~~~gs~I~t~~~----- 232 (910)
.+..+| +++||++++.---.......++ .-.+....+..+ .+++-.||.-..
T Consensus 216 ~~~~~~~~~~~~l~~~L-~~~Gi~y~~vd~~~~~~~~~~p--~yG~~~~~p~~~~~~py~v~~~~~~i~vf~RD~~lS~~ 292 (540)
T 3p0b_A 216 PVEGPPEGVRPGVDELL-MRAGIRYTFVDAHLVQGGEPLS--PYGEAALGPVESQEATYHVHELESGLRVLARNPETTLQ 292 (540)
T ss_dssp SSSCSCCEEECCHHHHH-HHTTCCEEEECTHHHHCSSCCC--C--------CCCCGGGGSEEECTTSCEEEEBCHHHHHH
T ss_pred CCCCCCCCCHHHHHHHH-HHCCCEEEEECCHHHCCCCCCC--CCCCCCCCCCCCCCCCEEECCCCCCEEEEECCHHHHHH
T ss_conf 54333333131299999-9859949998845541688888--87765666433444530102589866999678777764
Q ss_pred ----CCCCCCCC-----------CCCCCCCCCCC-CCCCC----CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEE
Q ss_conf ----99988999-----------98643247888-86226----821113548999999999999850005898389960
Q 002542 233 ----PENYEPPP-----------GGFYFEVNDKY-PIIQD----NIKLFDYNVQDRVNDFVAAAISQANITRTNHIMWTM 292 (910)
Q Consensus 233 ----~~~Y~~p~-----------~~f~f~~~~~~-~~~~d----~~~~~~~nv~~~~~~~~~~~~~~~~~~~t~~il~~~ 292 (910)
..+|-.-| .||-|-..... .|..+ +|......+++.++.|+...+++......+.|.+++
T Consensus 293 VWS~~~GYPGd~~YReF~rd~~~tGfky~rit~~~~~l~~K~pYdp~~A~~~~~~hA~~Fv~~l~~~~~~~~~~lvv~~~ 372 (540)
T 3p0b_A 293 VWSADYGYPGEGLYREFHRKDPLSGLHHWRVTHRKADLAEKAPYDPEAAFAKTEEHARHFVGLLERLAGRHPEGVILSPY 372 (540)
T ss_dssp HHCTTTSGGGSTTSBCSSCCCTTTCCCCBBCCSTTCCGGGCCBCCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEE
T ss_pred CCCCCCCCCCCHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 34554689998057654012445660241367765775456778999999999999999999999999745899899985
Q ss_pred CCC---CCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEECCHH
Q ss_conf 578---76531478899899999998417974899849343799988269999986778843553478852203203035
Q 002542 293 GTD---FKYQYARTWFRQLDKFIHYVNMDGRVNALYSTPSIYTDAKYASNESWPLKTDDFFPYADRAHAYWTGYFSSRPA 369 (910)
Q Consensus 293 G~D---f~y~~a~~~f~n~~~li~~~N~~~~~~i~~sT~~~Yf~a~~~~~~~lp~~~gDffpy~~~~~~yWtG~yTSR~~ 369 (910)
-.. +.+..+..| ++.+++.+.+ ...++..||++|++....... ++ .+=+- ..+.+..|.|=-....
T Consensus 373 D~ElfGHww~eG~~f---L~~l~r~l~~--~~~i~~~T~se~L~~~~~~~~-~~--~sSWg--~~g~~~~Wlg~~~~w~- 441 (540)
T 3p0b_A 373 DAELFGHWWYEGVAW---LEAVLRLLAQ--NPKVRPVTAREAVQGPAVRTA-LP--EGSWG--RGGDHRVWLNEKTLDY- 441 (540)
T ss_dssp EGGGBTTTBTTHHHH---HHHHHHHHTT--CSSEEECCHHHHTCSCEEECC-CC--SBCSS--GGGSSTTTSSGGGHHH-
T ss_pred CHHHCCCCCCHHHHH---HHHHHHHHHH--CCCEEEECHHHHHHHCCCCCC-CC--CCCCC--CCCCCCCCCCCHHHHH-
T ss_conf 524414684577999---9999998731--698499779999975898788-79--97788--9998373689779999-
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHC-CCCCCCCHHHHHHHHHHHCCCCC--C--CCCCCHHH
Q ss_conf 78999998799999998887516-67899745899999997613565--4--57760334
Q 002542 370 LKRYVKVMSGYYLAARQLEFYIG-RSETGHNTDSLADALAIAQHHDA--V--TGTEKQHV 424 (910)
Q Consensus 370 ~K~~~R~~e~~L~~ae~l~~l~~-~~~~~~~~~~l~~~l~~~QhHDa--I--tGTs~~~V 424 (910)
...+ -.+.+.+..++. .......++.+++.|+++|--|. + +||+.+..
T Consensus 442 ~~~l-------~~a~~~m~~~~~~~~~~~r~l~Qa~RELLlAesSDW~f~~~~~t~~~YA 494 (540)
T 3p0b_A 442 WEKV-------YRAEGAMREAARRGVLPEGVLRQAMRELLLLEASDWPFLMETGQAEAYA 494 (540)
T ss_dssp HHHH-------HHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHTBTHHHHTTTCTTTHHHH
T ss_pred HHHH-------HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHCCCCCCHHHH
T ss_conf 9999-------9999999998622655399999999999999848138772699846889
No 10
>3n98_A Alpha-amylase, GH57 family; GH57 family member, branching enzyme, transferase; HET: BGC PG4; 1.87A {Thermococcus kodakarensis} PDB: 3n92_A* 3n8t_A*
Probab=1.00 E-value=1 Score=91.69 Aligned_cols=305 Identities=14% Similarity=0.135 Sum_probs=167.6
Q ss_pred HHHCCHHHHHHHHHHHHCCCEEEECCEEEEECCCCCC-HHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCH------
Q ss_conf 9721989999999999589689982013120135789-699999999799999988099983116628998984------
Q 002542 105 WDEQSEAMQHEVKQLVGSGQLEFINGGMCMHDEAVTH-YIDMIDQTTLGHRFIKNEFGVTPRIGWQIDPFGHSA------ 177 (910)
Q Consensus 105 w~~~~p~~~~~vk~LV~~GrlE~v~Ggwv~~Dea~~~-~es~I~ql~~G~~~l~~~fG~~p~vgw~iD~FGhs~------ 177 (910)
|++..++....+|+|++.|++||+++++.-+-..+.. .+++..|+..|.+..++.||.+|+..|.+.. +++.
T Consensus 116 ~~~~~~dii~~fr~L~~~G~iElit~~~tH~~lPLl~~~e~~~~QI~~g~~~~~~~FG~~P~G~WlpE~-ay~~~~~~~~ 194 (562)
T 3n98_A 116 WKAINGDIIGKLRELQDQGYVEVITSAATHGYLPLLGRDEAIRAQIANGVATYEKHFGMKPKGIWLPEC-AYRPAGEWEL 194 (562)
T ss_dssp HHHTTTCHHHHHHHHHHTTSEEEEEECTTCBCGGGCSCHHHHHHHHHHHHHHHHHHHSSCCSBEECGGG-CBCCSEEEEC
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEECCCC-CEECCCCCCC
T ss_conf 999655799999999987998997577354686557998999999999999999980999998989313-1307644556
Q ss_pred ---------HHHHHHHHHCCCCEEEEECCCHHHHHHHCCCCCEEEEEECCCC----------CCCCCEEEEEEC------
Q ss_conf ---------5589985313994788822365657632027840599960899----------999870277638------
Q 002542 178 ---------VQAYLLGSEVGFDSFFYGRIDYQDRAKRKNEKSLEVVWQGSRS----------LGSSAQIFAGAF------ 232 (910)
Q Consensus 178 ---------~~p~ll~~~~G~~~~~~~R~~~~~k~~~~~~~~~eF~W~g~d~----------~~~gs~I~t~~~------ 232 (910)
.+..+| +++||++++.---.-.....++... .|.+..+ .|++-.||.--.
T Consensus 195 ~~~~~~~~~~i~~~L-~~~Gi~y~~vd~~~~~~~~~~p~~g----~~~Pv~~~~~~~~pY~~~g~~i~vf~RD~~lS~~V 269 (562)
T 3n98_A 195 PGGRKVKRQGIEKFL-EEFGLRYFFVESRLIDEGPASNVYG----EVLIADTEKTTLRPYWIKGSNVAVFARNRETGHQV 269 (562)
T ss_dssp GGGCEEEECCHHHHH-HTTTCCEEEECHHHHHCCCCCSSTT----CCCCCCCSSCSSSCEEETTSSCEEEECCHHHHHHH
T ss_pred CCCCCCCHHHHHHHH-HHCCCEEEEECCHHHCCCCCCCCCC----CCCCCCCCCCCCCCEECCCCCEEEEECCHHHHHHH
T ss_conf 654222131199999-9859959998846751578888877----54665555444553123798379997375661331
Q ss_pred --C-CCCCCCC-----------CCCCCCCCCC-CCCCCC----CCCCCCCCHHHHHHHHHHHHHHHHC-----CCCCCEE
Q ss_conf --9-9988999-----------9864324788-886226----8211135489999999999998500-----0589838
Q 002542 233 --P-ENYEPPP-----------GGFYFEVNDK-YPIIQD----NIKLFDYNVQDRVNDFVAAAISQAN-----ITRTNHI 288 (910)
Q Consensus 233 --~-~~Y~~p~-----------~~f~f~~~~~-~~~~~d----~~~~~~~nv~~~~~~~~~~~~~~~~-----~~~t~~i 288 (910)
+ .+|-.-| .||-|-+... ..+..+ +|......+.+.++.|+....++.. ..+.+.|
T Consensus 270 WS~~~GYPGd~~YRef~rd~~~~Gfky~ritg~~~~l~~K~pYdP~~A~~~~~~hA~~Fv~~~~~~~~~~~~~~~~~~lv 349 (562)
T 3n98_A 270 WSAHYGYPGDFWYREFHKKAPKSGGQYWRITSKEVGLGEKEFYDPDKAMERVEEHARHFVSLVERLLREHEEKFGEKGII 349 (562)
T ss_dssp HCTTTSGGGCTTSBCSSCCCTTTCCCCBBCCSSSSCGGGCCBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCEE
T ss_pred CCCCCCCCCCHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEE
T ss_conf 45545889972676640123325704641467667755578789899999999999999999999999887325899879
Q ss_pred EEEECCC---CCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCC--CCCCCCCCCCCCCC-CCCCCCCCE
Q ss_conf 9960578---76531478899899999998417974899849343799988269--99998677884355-347885220
Q 002542 289 MWTMGTD---FKYQYARTWFRQLDKFIHYVNMDGRVNALYSTPSIYTDAKYASN--ESWPLKTDDFFPYA-DRAHAYWTG 362 (910)
Q Consensus 289 l~~~G~D---f~y~~a~~~f~n~~~li~~~N~~~~~~i~~sT~~~Yf~a~~~~~--~~lp~~~gDffpy~-~~~~~yWtG 362 (910)
.+++-.. +.+..+..| +..+++.+.+ -.++..||++|++...... ..++. + ... .+.+..|.|
T Consensus 350 v~~~D~ElfGHwW~EG~~f---L~~l~r~l~~---~~i~~~T~se~L~~~~~~~~~~~~~~--s---SWg~~g~~~~Wlg 418 (562)
T 3n98_A 350 VAPYDTELFGHWWFEGVKW---LGRVLELLYQ---RGVETPTLSRFLEEYSGEKHEIELPE--G---SWGANSDHSTWWN 418 (562)
T ss_dssp EEEEEGGGBTTTBTTHHHH---HHHHHHHHHH---TTEECCCHHHHHHTCCSCCEEECCCS--B---CSSGGGSSTTTSS
T ss_pred EEEECHHHCCCCCCHHHHH---HHHHHHHHHH---CCEEEECHHHHHHHCCCCCCCCCCCC--C---CCCCCCCCCCCCC
T ss_conf 9986546527685402999---9999998755---78599779999985799775148899--8---8879998485889
Q ss_pred EEECCHHHHHHHHHHHHHHHHHHHHHHHHCC---CC--CCCCHHHHHHHHHHHCCCCC----CCCCCCHHHHHHHHHHHH
Q ss_conf 3203035789999987999999988875166---78--99745899999997613565----457760334899999999
Q 002542 363 YFSSRPALKRYVKVMSGYYLAARQLEFYIGR---SE--TGHNTDSLADALAIAQHHDA----VTGTEKQHVANDYAKRLA 433 (910)
Q Consensus 363 ~yTSR~~~K~~~R~~e~~L~~ae~l~~l~~~---~~--~~~~~~~l~~~l~~~QhHDa----ItGTs~~~V~~dy~~rl~ 433 (910)
--... +=+...+++ +.+..++.. .. ....++.+++.|+++|--|. -+||..+...+.+...+.
T Consensus 419 ~~~~w--~~~~l~~A~------~~m~~l~~~~~~~~~~~~r~L~Qa~RELLLAqsSDW~f~~~~~t~~~YA~~R~~~H~~ 490 (562)
T 3n98_A 419 EETEW--TWPHIYRAE------DRMVAIVSRFRGRDELTNRVIEQLARELLILEASDWQFLITTGQAKEYAKRRVLIHSR 490 (562)
T ss_dssp TTTTT--HHHHHHHHH------HHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTBHHHHHHHHHTSSHHHHHHHHHHHHH
T ss_pred CHHHH--HHHHHHHHH------HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHHHH
T ss_conf 77999--999999999------9999998632666521099999999999999968018873799827899999999999
Q ss_pred H
Q ss_conf 9
Q 002542 434 I 434 (910)
Q Consensus 434 ~ 434 (910)
.
T Consensus 491 ~ 491 (562)
T 3n98_A 491 D 491 (562)
T ss_dssp H
T ss_pred H
T ss_conf 9
Done!