BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002543
(910 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P87137|YDM6_SCHPO Uncharacterized protein C57A7.06 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC57A7.06 PE=1 SV=1
Length = 929
Score = 146 bits (369), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 121/354 (34%), Positives = 191/354 (53%), Gaps = 35/354 (9%)
Query: 233 APLPKPEQEKLERKVVYEQSKKDITKWEPLVKMNREAPSIYFD-EDTNLGFSTVGAIAAG 291
APL K Q++LER+ YEQ+K D+ KW+P+V NR++ + F +T + +A+
Sbjct: 325 APLAKSIQDRLERQAAYEQTKNDLEKWKPIVADNRKSDQLIFPMNETARPVPSNNGLASS 384
Query: 292 FEPRTEFEKKMASLVNDDKVKEAHKQDGSKLLELNKISVEDYLEERNHVAKMRSLLFRHE 351
FEPRTE E+KM + D ++ + L LNK+SVE+ E + MR L+FR E
Sbjct: 385 FEPRTESERKMHQALLDAGLENESALKKQEELALNKLSVEEVAERTRQLRFMRELMFREE 444
Query: 352 MKRKRIKKIKSKTYHRLLKKDRLKAASVEMLMDPEAAKE---EARKQEFKRAEERMTLKH 408
K KR+ KIKSKTY ++ K + K EM + P++ ++ E K E RA ERMT +H
Sbjct: 445 RKAKRVAKIKSKTYRKIRKNRKEK----EMALIPKSEEDLENERIKSEEARALERMTQRH 500
Query: 409 KNSSRWAKRILKRGLDAQDEGTRAAITEQLQQHALLTRKMKSMKDSSSSDDSSDEDDVDE 468
KN+S W +++L+R + EGTR A+ EQ+++ L +++ + S D +DV E
Sbjct: 501 KNTSSWTRKMLERA--SHGEGTREAVNEQIRKGDELMQRIHGKEIS-----EMDGEDVSE 553
Query: 469 NSAGSDQDRASKLYATAKEKTLKVLAEDDEVPESGVLSLPFMVRGMKKRKEEAIQEANAA 528
S SD D ++ +TA EK + ++E GVL + FM R R++ +Q+
Sbjct: 554 FS-DSDYDTNEQV-STAFEK----IRNEEEPKLKGVLGMKFM-RDASNRQKALVQD---E 603
Query: 529 LQEYESSLKKL--------EGTGGEENLKEGAASGRRVFGPVKR--EVLVPSKK 572
+Q +E L + +G G + G +GRR F P + ++ +PS+K
Sbjct: 604 MQAFEDELAGVPNEDDTSQKGEDGVPGVLIGNNTGRRSFKPSEEAAKLSLPSRK 657
Score = 90.5 bits (223), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 61/151 (40%), Positives = 86/151 (56%), Gaps = 9/151 (5%)
Query: 719 QEELIRLAFAGDDVEEDFEEDKEKVLNEENPVPEKPNL-IPGWGQWTDVQRKKGVPSWML 777
Q EL+ AFAGDDV +FE+DKE + E+ P E +L G V+++K P
Sbjct: 784 QRELVAKAFAGDDVVAEFEKDKEDWVQEDAPKEEDHSLPGWGSWGGVGVKQRKTKPK--- 840
Query: 778 DEHENAKKMREEALKKRKDAHLKHVIISEKLDKKAEKLHTKTLPYPFTSKEVFEQSIRVP 837
KK+ KRKD+ LKHVII+EK +KKA KL ++P+PF S+E +E+S+ +P
Sbjct: 841 -----VKKIAGLDPSKRKDSKLKHVIINEKRNKKAAKLTADSVPFPFESREQYERSLNLP 895
Query: 838 VGPEFNPATAVGALTRPDVKKKSGIIIKPIK 868
+GPE+ + P V K G +I PIK
Sbjct: 896 MGPEWTTRASHHKAVAPRVVTKRGKVINPIK 926
>sp|Q3T0Q8|UT14A_BOVIN U3 small nucleolar RNA-associated protein 14 homolog A OS=Bos
taurus GN=UTP14A PE=2 SV=1
Length = 770
Score = 121 bits (304), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 101/318 (31%), Positives = 182/318 (57%), Gaps = 23/318 (7%)
Query: 144 DGDNDE--RHLRMLQGVTGMPSEFFEGKKKKKNVVISEAYPE-SEFNPTRDVLDGNGQ-I 199
+GD DE +H ++L+ ++ + GK ++K SEA + SEF+ + + G+G+ +
Sbjct: 35 EGDKDEERKHQKLLESISSL-----NGKDRQKLADRSEASLKVSEFSVSSE---GSGEKL 86
Query: 200 SIDDLLEPLQGKSGYSKLRKRMHQMRKKSTSVLAPLPKPEQEKLERKVVYEQSKKDITKW 259
+ DLLEP++ S + ++K++++++ K T L PL + E E++ R+V + +S + ++KW
Sbjct: 87 VLSDLLEPVKTSSSLAAVKKQLNRVKSKKTVEL-PLHREEIERIHREVAFNKSSQILSKW 145
Query: 260 EPLVKMNREAPSIYFD-EDTNLGFSTVGAIAAGFEPRTEFEKKMASLVNDDK--VKEAHK 316
+P+V NR+A + F F+ + + G++ T E+++ +L++ +K V +
Sbjct: 146 DPVVLKNRQAEQLVFPLSKPQSAFAPIEHVVNGWKAGTPLEQEIFNLLHKNKQPVTDPLL 205
Query: 317 QDGSKLLELNKISVEDYLEERNHVAKMRSLLFRHEMKRKRIKKIKSKTYHRLLKKDRLKA 376
K L +S+E+ R + + R+L +E + +R K+IKSK YHR+LKK + K
Sbjct: 206 TPVEKA-SLKAMSLEEVKMRRAELQRARALQSYYEARARREKRIKSKKYHRILKKGKAKQ 264
Query: 377 A--SVEML--MDPEAAKEEARKQEFKRAEERMTLKHKNSSRWAKRILKRGLDAQDEGTRA 432
A E L ++P AA EE K + R ERM+LKH+NS +WAK K + D R
Sbjct: 265 ALKDFEKLQKVNPAAALEELEKLDKARMMERMSLKHQNSGKWAKS--KAIMAKYDLEARQ 322
Query: 433 AITEQLQQHALLTRKMKS 450
A+ EQL ++ LT+K+++
Sbjct: 323 AMQEQLARNKELTQKVRA 340
Score = 97.4 bits (241), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 65/160 (40%), Positives = 90/160 (56%), Gaps = 19/160 (11%)
Query: 719 QEELIRLAFAGDDVEEDFEEDKEKVLNEENPVPEKPNL-IPGWGQWTDVQRKKGVPSWML 777
Q ++I+ AFAGDDV DF ++K + + E P+ +L +PGWG+W + K PS
Sbjct: 590 QRQIIKEAFAGDDVIRDFLKEKREAV--EASKPKDLDLTLPGWGEWGGIGLK---PS--- 641
Query: 778 DEHENAKKMREEALKK-----RKDAHLKHVIISEKLDKKAEKLHTKTLPYPFTSKEVFEQ 832
AKK R +K RKD +L +VII+EK + A + LP+PFT + FE+
Sbjct: 642 -----AKKRRRFLIKAPEGPPRKDKNLPNVIINEKRNTHAAAHQVQVLPHPFTHHQQFER 696
Query: 833 SIRVPVGPEFNPATAVGALTRPDVKKKSGIIIKPIKFEEV 872
+I+ PVG +N A LT P V K G IIKPIK E+V
Sbjct: 697 TIQTPVGSTWNTQRAFQKLTMPKVVTKPGHIIKPIKAEDV 736
>sp|Q5TAP6|UT14C_HUMAN U3 small nucleolar RNA-associated protein 14 homolog C OS=Homo
sapiens GN=UTP14C PE=2 SV=1
Length = 766
Score = 99.8 bits (247), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 67/160 (41%), Positives = 90/160 (56%), Gaps = 19/160 (11%)
Query: 719 QEELIRLAFAGDDVEEDFEEDKEKVLNEENPVPEKPNL-IPGWGQWTDVQRKKGVPSWML 777
Q ++I+ AFAGDDV DF ++K + + E P+ +L +PGWG+W V K PS
Sbjct: 590 QRQMIKEAFAGDDVIRDFLKEKREAV--EASKPKDVDLTLPGWGEWGGVGLK---PS--- 641
Query: 778 DEHENAKKMREEALKK-----RKDAHLKHVIISEKLDKKAEKLHTKTLPYPFTSKEVFEQ 832
AKK R+ +K RKD +L +VIISEK + A + LPYPFT FE+
Sbjct: 642 -----AKKRRQFLIKAPEGPPRKDKNLPNVIISEKRNIHAAAHQVQVLPYPFTHHRQFER 696
Query: 833 SIRVPVGPEFNPATAVGALTRPDVKKKSGIIIKPIKFEEV 872
+I+ P+G +N A LT P V K G IIKPIK E+V
Sbjct: 697 TIQTPIGSTWNTQRAFQKLTTPKVVTKPGHIIKPIKAEDV 736
>sp|Q04500|UTP14_YEAST U3 small nucleolar RNA-associated protein 14 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=UTP14 PE=1
SV=1
Length = 899
Score = 96.7 bits (239), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 90/150 (60%), Gaps = 5/150 (3%)
Query: 719 QEELIRLAFAGDDVEEDFEEDKEKVLNEENPVPEKPNLIPGWGQWTDVQRKKGVPSWMLD 778
Q+++I AFAGDDV +F+E+K++V+++E+ E +PGWG+W K
Sbjct: 751 QQDVIAEAFAGDDVVAEFQEEKKRVIDDEDD-KEVDTTLPGWGEWAGAGSKPKNKKRKFI 809
Query: 779 EHENAKKMREEALKKRKDAHLKHVIISEKLDKKAEKLHTKTLPYPFTSKEVFEQSIRVPV 838
+ ++ KR+D +L++VII+EK++KK K + +P+PF ++E +E+S+R+P+
Sbjct: 810 KKVKGVVNKD----KRRDKNLQNVIINEKVNKKNLKYQSSAVPFPFENREQYERSLRMPI 865
Query: 839 GPEFNPATAVGALTRPDVKKKSGIIIKPIK 868
G E+ + L +P + K G +I P+K
Sbjct: 866 GQEWTSRASHQELIKPRIMTKPGQVIDPLK 895
>sp|Q640M1|UT14A_MOUSE U3 small nucleolar RNA-associated protein 14 homolog A OS=Mus
musculus GN=Utp14a PE=2 SV=1
Length = 767
Score = 95.9 bits (237), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 62/160 (38%), Positives = 88/160 (55%), Gaps = 17/160 (10%)
Query: 719 QEELIRLAFAGDDVEEDFEEDKEKVLNEENPVPEKPNLIPGWGQWTDVQRKKGVPSWMLD 778
Q+++I+ AFAGDDV ++F ++K + + P L PGWG+W + K PS
Sbjct: 588 QKQMIKEAFAGDDVIKEFLKEKREAIQANKPKAVDLTL-PGWGEWGGMNLK---PS---- 639
Query: 779 EHENAKKMREEALKK-----RKDAHLKHVIISEKLDKKAEKLHTKTLPYPFTSKEVFEQS 833
A+K R +K RKD +L +VIISEK + A + LPYPFT + FE++
Sbjct: 640 ----ARKRRRFLIKAPEGPPRKDKNLPNVIISEKRNIHAAAHQVRVLPYPFTHHQQFERT 695
Query: 834 IRVPVGPEFNPATAVGALTRPDVKKKSGIIIKPIKFEEVN 873
I+ P+G +N A LT P V K G IIKPI E+V+
Sbjct: 696 IQNPIGSTWNTQRAFQKLTAPKVVTKPGHIIKPITAEDVD 735
Score = 94.7 bits (234), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 115/380 (30%), Positives = 207/380 (54%), Gaps = 27/380 (7%)
Query: 144 DGDNDERHLRMLQGVTGMPSEFFEGKKKKKNVVISEA-YPESEFNPTRDVLDGNGQ-ISI 201
D D + +H ++L+ + + GK + K SEA SEFN + + G+G+ +++
Sbjct: 36 DSDGERKHQKLLEAIGSL-----SGKNRWKLPERSEAGLKVSEFNVSSE---GSGEKLAL 87
Query: 202 DDLLEPLQGKSGYSKLRKRMHQMRKKSTSVLAPLPKPEQEKLERKVVYEQSKKDITKWEP 261
DLL PL+ S + ++K++ +++ K T L PL K E E++ R+V + ++ + ++KW+
Sbjct: 88 SDLLGPLKPSSSLAAVKKQLSRVKSKKTLEL-PLHKREVEQIHREVAFSKTSQTLSKWDS 146
Query: 262 LVKMNREAPSIYFD-EDTNLGFSTVGAIAAGFEPRTEFEKKMASLVNDDK--VKEAHKQD 318
+V+ NREA + F E F+ + + ++ RT E+++ +L++ +K V +
Sbjct: 147 VVQKNREAEQLVFPLEKEPSSFAPMEHVFREWKARTPLEQEVFNLLHKNKQPVTDPLLTP 206
Query: 319 GSKLLELNKISVEDYLEERNHVAKMRSLLFRHEMKRKRIKKIKSKTYHRLLKKDRLKAAS 378
K L +S+E+ R + + R+L +E + +R+KKIKSK YH+++KK + K A
Sbjct: 207 VEKA-SLKAMSLEEAKIRRAELQRARALQSYYEARARRMKKIKSKKYHKIVKKGKAKKAL 265
Query: 379 --VEML--MDPEAAKEEARKQEFKRAEERMTLKHKNSSRWAKRILKRGLDAQDEGTRAAI 434
E L +DP+AA EE K E R ERM+LKH+NS +WAK K + D R A+
Sbjct: 266 KDFEQLRKVDPDAALEELEKMEKARMMERMSLKHQNSGKWAKS--KAIMAKYDLEARQAM 323
Query: 435 TEQLQQHALLTRKMKSMKDSSSSDDSSDE-----DDVDENSAGSDQDRASKLYATAKE-K 488
EQL ++ LT+K++ + +S + +E D V+E +D L + +++ K
Sbjct: 324 QEQLAKNKELTQKLQVVSESEEEGGADEEEALVPDIVNEVQKTADGPNPWMLRSCSRDAK 383
Query: 489 TLKVLAEDDEVPESGVLSLP 508
++ A+ +++PES P
Sbjct: 384 ENEIQADSEQLPESAAHEFP 403
>sp|Q6EJB6|UT14B_MOUSE U3 small nucleolar RNA-associated protein 14 homolog B OS=Mus
musculus GN=Utp14b PE=1 SV=2
Length = 756
Score = 94.7 bits (234), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 72/194 (37%), Positives = 103/194 (53%), Gaps = 34/194 (17%)
Query: 700 QMVD--GILS--SAPKASYKLPS-----------QEELIRLAFAGDDVEEDFEEDKEKVL 744
QM+D +L+ S+P S +P+ ++LIR AFAGDDV +F ++K + +
Sbjct: 541 QMIDLRNLLTANSSPVRSLAVPTIQQLEDEVETDHKQLIREAFAGDDVIREFLKEKREAI 600
Query: 745 NEENPVPEKPNL-IPGWGQWTDVQRKKGVPSWMLDEHENAKKMREEALKK-----RKDAH 798
E P+ +L +PGWG+W + K PS AKK R +K RKD +
Sbjct: 601 --ETNKPKDLDLSLPGWGEWVGMGLK---PS--------AKKRRRFLIKAPESSPRKDKN 647
Query: 799 LKHVIISEKLDKKAEKLHTKTLPYPFTSKEVFEQSIRVPVGPEFNPATAVGALTRPDVKK 858
L +VIISEK + A + LP+PFT ++ FE++I+ P+G +N LT P V
Sbjct: 648 LPNVIISEKRNIHAAAHQVRALPHPFTHQQQFERTIQNPIGYMWNTQRTFQKLTVPKVGT 707
Query: 859 KSGIIIKPIKFEEV 872
K G IIKPIK E V
Sbjct: 708 KLGHIIKPIKAENV 721
>sp|Q9BVJ6|UT14A_HUMAN U3 small nucleolar RNA-associated protein 14 homolog A OS=Homo
sapiens GN=UTP14A PE=1 SV=1
Length = 771
Score = 94.0 bits (232), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 71/188 (37%), Positives = 94/188 (50%), Gaps = 34/188 (18%)
Query: 721 ELIRLAFAGDDVEEDFEEDKEKVLNEENPVPEKPNL-IPGWGQWTDVQRKKGVPSWMLDE 779
++I+ AFAGDDV DF ++K + + E P+ +L +PGWG+W V K PS
Sbjct: 593 QMIKEAFAGDDVIRDFLKEKREAV--EASKPKDVDLTLPGWGEWGGVGLK---PS----- 642
Query: 780 HENAKKMREEALKK-----RKDAHLKHVIISEKLDKKAEKLHTKTLPYPFTSKEVFEQSI 834
AKK R +K RKD +L +VII+EK + A + LPYPFT FE++I
Sbjct: 643 ---AKKRRRFLIKAPEGPPRKDKNLPNVIINEKRNIHAAAHQVRVLPYPFTHHWQFERTI 699
Query: 835 RVPVGPEFNPATAVGALTRPDVKKKSGIIIKPIKFEEV---------------NPHEKTE 879
+ P+G +N A LT P V K G II PIK E+V NP T
Sbjct: 700 QTPIGSTWNTQRAFQKLTTPKVVTKPGHIINPIKAEDVGYRSSSRSDLSVIQRNPKRITT 759
Query: 880 DHKGSGKK 887
HK KK
Sbjct: 760 RHKKQLKK 767
>sp|Q967Z0|MYSP_DERFA Paramyosin (Fragment) OS=Dermatophagoides farinae PE=1 SV=1
Length = 692
Score = 34.3 bits (77), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 589 EAEANMDAGNGTNNDVQKNVKTDSFTLHVDHESHPDSVFKSFEDVVRDPG 638
E E ++DA N N D+QK +K + + + ++H D V + + V G
Sbjct: 463 ELELSLDAANKANIDLQKTIKKQALQI-TELQAHYDEVHRQLQQAVDQLG 511
>sp|Q9BMM8|MYSP_SARSC Paramyosin OS=Sarcoptes scabiei PE=2 SV=1
Length = 876
Score = 33.9 bits (76), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 589 EAEANMDAGNGTNNDVQKNVKTDSFTLHVDHESHPDSVFKSFEDVVRDPG 638
E E ++DA N N D+QK +K + + + ++H D V + + V G
Sbjct: 549 ELELSLDAANKANIDLQKTIKKQALQI-TELQAHYDEVHRQLQQAVDQLG 597
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.307 0.127 0.350
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 363,163,241
Number of Sequences: 539616
Number of extensions: 17490274
Number of successful extensions: 85330
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 1221
Number of HSP's that attempted gapping in prelim test: 74219
Number of HSP's gapped (non-prelim): 10367
length of query: 910
length of database: 191,569,459
effective HSP length: 127
effective length of query: 783
effective length of database: 123,038,227
effective search space: 96338931741
effective search space used: 96338931741
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 66 (30.0 bits)